HHsearch alignment for GI: 254780134 and conserved domain: cd01184

>cd01184 INT_SG2_C INT_SG2, DNA breaking-rejoining enzymes, integrase/recombinases subgroup 2, C-terminal catalytic domain. The CD contains mainly predicted integrase/recombinases and phage-related integrases. Some have N-terminal domains, which show little sequence similarity to each other. Members of this subgroup are predominantly found in proteobacteria.
Probab=99.93  E-value=5.7e-26  Score=187.36  Aligned_cols=151  Identities=20%  Similarity=0.285  Sum_probs=113.5

Q ss_pred             CCHHHHHHHHHHH-------CCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEE--EECCCC--C------CCCCHHH-HHH
Q ss_conf             6523445666640-------37808999989898618873100256640144--302332--1------1331024-331
Q gi|254780134|r  174 WTKEDMQQFKSFW-------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSI--K------TQKTGTI-ITV  235 (348)
Q Consensus       174 ~t~~ei~~~~~~~-------~~~~~~~~~~~l~~~TG~R~~Ei~~L~~~did--~~~i~~--~------~~Kt~~~-~~v  235 (348)
T Consensus         1 f~~~e~~~ll~~~~~~~~~~~~~~~~y~~~ll~~~TGlR~~Ei~~L~~~Di~~~~g~~~i~i~~~~~~~~~Kt~~s~R~v   80 (181)
T cd01184           1 FTTEELKAIFASPAYTGWASQKDPHRYWLPLLGLYTGARVNEIAQLQVDDIREEDGVPCIDITNDDEDQSLKNAASRRTI   80 (181)
T ss_pred             CCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHCCCHHHEEEECCEEEEEEECCCCCCCCCCCCCEEEE
T ss_conf             99899999967800034546798059999999999690799997197989713599899999637877656787753641


Q ss_pred             CCHHHHHHH-----HHHHCC-CCCCCCCC--CCCCCCCHHHHHHHHHHHHHHCCCC---CCCCHHHHHHHHHHHHCCCCH
Q ss_conf             121689999-----964201-33221122--2457758778999999999983889---981402699999999848998
Q gi|254780134|r  236 ELPDGFMKL-----LAMTPI-GKETFFIN--NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATA  304 (348)
Q Consensus       236 pl~~~l~~~-----l~~~~~-~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~agi~---~~~H~lRht~at~l~~~G~~~  304 (348)
T Consensus        81 Pl~~~l~~~~~~~~~~~~~~~~~~~lF~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~H~lRHT~aT~l~~~gv~~  160 (181)
T cd01184          81 PVHPELIELGFLDYVEARRAAGHKRLFPDLPAGKTGGYGSAVSKWFSRYLKKLGLKDKGKSFHSFRHTFITELRNAGVSR  160 (181)
T ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCH
T ss_conf             68899999999999999871599612444447888861057999999999984999788978646899999999869899


Q ss_pred             HHHHHHHCCCCHHHH-HHHHH
Q ss_conf             899999649998999-99999
Q gi|254780134|r  305 HELMATYGWKTVDQA-ETYTK  324 (348)
Q Consensus       305 ~~i~~~lGHss~~~t-~~Y~~  324 (348)
T Consensus       161 ~~v~~~lGHss~~tT~~~Ygk  181 (181)
T cd01184         161 ELIAAIMGHEEGTTTFGRYGK  181 (181)
T ss_pred             HHHHHHCCCCCCCCCCCCCCC
T ss_conf             999998289998864253081