HHsearch alignment for GI: 254780134 and conserved domain: cd01184
>cd01184 INT_SG2_C INT_SG2, DNA breaking-rejoining enzymes, integrase/recombinases subgroup 2, C-terminal catalytic domain. The CD contains mainly predicted integrase/recombinases and phage-related integrases. Some have N-terminal domains, which show little sequence similarity to each other. Members of this subgroup are predominantly found in proteobacteria.
Probab=99.93 E-value=5.7e-26 Score=187.36 Aligned_cols=151 Identities=20% Similarity=0.285 Sum_probs=113.5
Q ss_pred CCHHHHHHHHHHH-------CCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEE--EECCCC--C------CCCCHHH-HHH
Q ss_conf 6523445666640-------37808999989898618873100256640144--302332--1------1331024-331
Q gi|254780134|r 174 WTKEDMQQFKSFW-------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSI--K------TQKTGTI-ITV 235 (348)
Q Consensus 174 ~t~~ei~~~~~~~-------~~~~~~~~~~~l~~~TG~R~~Ei~~L~~~did--~~~i~~--~------~~Kt~~~-~~v 235 (348)
T Consensus 1 f~~~e~~~ll~~~~~~~~~~~~~~~~y~~~ll~~~TGlR~~Ei~~L~~~Di~~~~g~~~i~i~~~~~~~~~Kt~~s~R~v 80 (181)
T cd01184 1 FTTEELKAIFASPAYTGWASQKDPHRYWLPLLGLYTGARVNEIAQLQVDDIREEDGVPCIDITNDDEDQSLKNAASRRTI 80 (181)
T ss_pred CCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHCCCHHHEEEECCEEEEEEECCCCCCCCCCCCCEEEE
T ss_conf 99899999967800034546798059999999999690799997197989713599899999637877656787753641
Q ss_pred CCHHHHHHH-----HHHHCC-CCCCCCCC--CCCCCCCHHHHHHHHHHHHHHCCCC---CCCCHHHHHHHHHHHHCCCCH
Q ss_conf 121689999-----964201-33221122--2457758778999999999983889---981402699999999848998
Q gi|254780134|r 236 ELPDGFMKL-----LAMTPI-GKETFFIN--NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATA 304 (348)
Q Consensus 236 pl~~~l~~~-----l~~~~~-~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~agi~---~~~H~lRht~at~l~~~G~~~ 304 (348)
T Consensus 81 Pl~~~l~~~~~~~~~~~~~~~~~~~lF~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~H~lRHT~aT~l~~~gv~~ 160 (181)
T cd01184 81 PVHPELIELGFLDYVEARRAAGHKRLFPDLPAGKTGGYGSAVSKWFSRYLKKLGLKDKGKSFHSFRHTFITELRNAGVSR 160 (181)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCH
T ss_conf 68899999999999999871599612444447888861057999999999984999788978646899999999869899
Q ss_pred HHHHHHHCCCCHHHH-HHHHH
Q ss_conf 899999649998999-99999
Q gi|254780134|r 305 HELMATYGWKTVDQA-ETYTK 324 (348)
Q Consensus 305 ~~i~~~lGHss~~~t-~~Y~~ 324 (348)
T Consensus 161 ~~v~~~lGHss~~tT~~~Ygk 181 (181)
T cd01184 161 ELIAAIMGHEEGTTTFGRYGK 181 (181)
T ss_pred HHHHHHCCCCCCCCCCCCCCC
T ss_conf 999998289998864253081