HHsearch alignment for GI: 254780134 and conserved domain: cd01192
>cd01192 INT_P22_C P22-like integrases, site-specific recombinases, DNA breaking-rejoining enzymes, C-terminal catalytic domain. This CD includes various bacterial and phage integrases, including those similar to phage P22-like integrases, DLP12 and APSE-1.
Probab=99.96 E-value=1.9e-29 Score=209.91 Aligned_cols=167 Identities=19% Similarity=0.239 Sum_probs=135.3
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEE--EECCCCC--CCCCHHHHHHCCHHHHHHH
Q ss_conf 44211652344566664037808999989898618873100256640144--3023321--1331024331121689999
Q gi|254780134|r 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK--TQKTGTIITVELPDGFMKL 244 (348)
Q Consensus 169 ~~~~~~t~~ei~~~~~~~~~~~~~~~~~~l~~~TG~R~~Ei~~L~~~did--~~~i~~~--~~Kt~~~~~vpl~~~l~~~ 244 (348)
T Consensus 2 kr~r~Lt~eE~~~ll~~~~--~~~r~~i~l~~~TG~R~~El~~L~~~did~~~~~i~i~~~~~K~~~~r~vpl~~~~~~~ 79 (177)
T cd01192 2 KRVRWLTPEEAERLIAELP--PHLKPAVLFALNTGLRRSEILGLEWSQVDLDNRVAWVRPATSKGGRAIRVPLNDEALQV 79 (177)
T ss_pred CCCCCCCHHHHHHHHHHCC--HHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHCCHHCCCCCCCCCCCEEECCCHHHHHHH
T ss_conf 8778999999999998289--87999999999978349999838786666301110114456888854426130999999
Q ss_pred HHHHCC--CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-CCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHH
Q ss_conf 964201--332211222457758778999999999983889-98140269999999984899889999964999899999
Q gi|254780134|r 245 LAMTPI--GKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321 (348)
Q Consensus 245 l~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~agi~-~~~H~lRht~at~l~~~G~~~~~i~~~lGHss~~~t~~ 321 (348)
T Consensus 80 l~~~~~~~~~~~vf~~~~~~~~~--~~~~~~~~~~~~agi~~~~~H~lRHt~at~l~~~G~~~~~i~~~lGH~~~~~T~~ 157 (177)
T cd01192 80 LKRQKAGAHKPWVFAGAGGDPRI--DSKTAWRQALQRAGISDFRWHDLRHTWASWLVQSGVPLYVLQELLGHSSLQMVRR 157 (177)
T ss_pred HHHHHHCCCCCCEECCCCCCCCC--HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHH
T ss_conf 99987235775141158998510--1789999999973799998688968899999996989999999958998999999
Q ss_pred HHHHHH-HHHHHHHHHHHHHHH
Q ss_conf 999998-999999999999854
Q gi|254780134|r 322 YTKGAD-RIRLGIKNSRRISSV 342 (348)
Q Consensus 322 Y~~~~~-~~r~a~~a~~~l~~~ 342 (348)
T Consensus 158 Y~h~~~~~~r---~a~~~l~~~ 176 (177)
T cd01192 158 YAHLSPEHLR---AAARALDAF 176 (177)
T ss_pred HHCCCHHHHH---HHHHHHHHH
T ss_conf 8866999999---999998734