HHsearch alignment for GI: 254780134 and conserved domain: cd01192

>cd01192 INT_P22_C P22-like integrases, site-specific recombinases, DNA breaking-rejoining enzymes, C-terminal catalytic domain. This CD includes various bacterial and phage integrases, including those similar to phage P22-like integrases, DLP12 and APSE-1.
Probab=99.96  E-value=1.9e-29  Score=209.91  Aligned_cols=167  Identities=19%  Similarity=0.239  Sum_probs=135.3

Q ss_pred             CCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEE--EECCCCC--CCCCHHHHHHCCHHHHHHH
Q ss_conf             44211652344566664037808999989898618873100256640144--3023321--1331024331121689999
Q gi|254780134|r  169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK--TQKTGTIITVELPDGFMKL  244 (348)
Q Consensus       169 ~~~~~~t~~ei~~~~~~~~~~~~~~~~~~l~~~TG~R~~Ei~~L~~~did--~~~i~~~--~~Kt~~~~~vpl~~~l~~~  244 (348)
T Consensus         2 kr~r~Lt~eE~~~ll~~~~--~~~r~~i~l~~~TG~R~~El~~L~~~did~~~~~i~i~~~~~K~~~~r~vpl~~~~~~~   79 (177)
T cd01192           2 KRVRWLTPEEAERLIAELP--PHLKPAVLFALNTGLRRSEILGLEWSQVDLDNRVAWVRPATSKGGRAIRVPLNDEALQV   79 (177)
T ss_pred             CCCCCCCHHHHHHHHHHCC--HHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHCCHHCCCCCCCCCCCEEECCCHHHHHHH
T ss_conf             8778999999999998289--87999999999978349999838786666301110114456888854426130999999


Q ss_pred             HHHHCC--CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-CCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHH
Q ss_conf             964201--332211222457758778999999999983889-98140269999999984899889999964999899999
Q gi|254780134|r  245 LAMTPI--GKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET  321 (348)
Q Consensus       245 l~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~agi~-~~~H~lRht~at~l~~~G~~~~~i~~~lGHss~~~t~~  321 (348)
T Consensus        80 l~~~~~~~~~~~vf~~~~~~~~~--~~~~~~~~~~~~agi~~~~~H~lRHt~at~l~~~G~~~~~i~~~lGH~~~~~T~~  157 (177)
T cd01192          80 LKRQKAGAHKPWVFAGAGGDPRI--DSKTAWRQALQRAGISDFRWHDLRHTWASWLVQSGVPLYVLQELLGHSSLQMVRR  157 (177)
T ss_pred             HHHHHHCCCCCCEECCCCCCCCC--HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHH
T ss_conf             99987235775141158998510--1789999999973799998688968899999996989999999958998999999


Q ss_pred             HHHHHH-HHHHHHHHHHHHHHH
Q ss_conf             999998-999999999999854
Q gi|254780134|r  322 YTKGAD-RIRLGIKNSRRISSV  342 (348)
Q Consensus       322 Y~~~~~-~~r~a~~a~~~l~~~  342 (348)
T Consensus       158 Y~h~~~~~~r---~a~~~l~~~  176 (177)
T cd01192         158 YAHLSPEHLR---AAARALDAF  176 (177)
T ss_pred             HHCCCHHHHH---HHHHHHHHH
T ss_conf             8866999999---999998734