HHsearch alignment for GI: 254780134 and conserved domain: cd01194

>cd01194 INT_Tn554A_C Tn544A and related transposases, DNA breaking-rejoining enzymes, integrase/recombinases, C-terminal catalytic domain. This CD includes various bacterial transposases similar to TnpA from transposon Tn554.
Probab=99.95  E-value=1.3e-27  Score=198.01  Aligned_cols=153  Identities=18%  Similarity=0.258  Sum_probs=125.6

Q ss_pred             CCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEE--EECCCCC---------CCCCHHHHHHCCHHHHH
Q ss_conf             652344566664037808999989898618873100256640144--3023321---------13310243311216899
Q gi|254780134|r  174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK---------TQKTGTIITVELPDGFM  242 (348)
Q Consensus       174 ~t~~ei~~~~~~~~~~~~~~~~~~l~~~TG~R~~Ei~~L~~~did--~~~i~~~---------~~Kt~~~~~vpl~~~l~  242 (348)
T Consensus         1 LT~~Ev~~ll~a~~-~~Rd~~i~~ll~~TGlR~gE~~~L~~~Did~~~~~i~i~~~~~~~~~~~~K~~~~r~vpi~~~l~   79 (186)
T cd01194           1 LTPSEVQRLINACG-NLRDKFLFALLYETGLRIGEALGLRIEDIDLAENQIWLVPREDNANGARAKSGRERRIPVSQYLI   79 (186)
T ss_pred             CCHHHHHHHHHHCC-HHHHHHHHHHHHHHCCCHHHHHHCCHHHCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCHHHH
T ss_conf             99899999998154-03899999999996989888970889872576998999854455555203688425887779999


Q ss_pred             HHHHHH--------CCCCCCCCCCCC----CCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf             999642--------013322112224----57758778999999999983889981402699999999848998899999
Q gi|254780134|r  243 KLLAMT--------PIGKETFFINND----KQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMAT  310 (348)
Q Consensus       243 ~~l~~~--------~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~agi~~~~H~lRht~at~l~~~G~~~~~i~~~  310 (348)
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~H~lRHT~at~l~~~G~~~~~v~~~  159 (186)
T cd01194          80 DLYVDYVTEIYYLEELESDYVFVNVKGGNQGKPLNYTDVYDLVRRLKKKTGIDFTPHMFRHTHATELIRAGWSIEVVADR  159 (186)
T ss_pred             HHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHH
T ss_conf             99999999976332157774456335775688777999999999999984998774575999999999879999999998


Q ss_pred             HCCCCHHHH-HHHHHHHH
Q ss_conf             649998999-99999998
Q gi|254780134|r  311 YGWKTVDQA-ETYTKGAD  327 (348)
Q Consensus       311 lGHss~~~t-~~Y~~~~~  327 (348)
T Consensus       160 lGH~~~~tT~~~Y~h~~~  177 (186)
T cd01194         160 LGHAHVQTTLNTYGHLSE  177 (186)
T ss_pred             HCCCCHHHHHHHHHCCCH
T ss_conf             289987999998456899