HHsearch alignment for GI: 254780134 and conserved domain: cd01194
>cd01194 INT_Tn554A_C Tn544A and related transposases, DNA breaking-rejoining enzymes, integrase/recombinases, C-terminal catalytic domain. This CD includes various bacterial transposases similar to TnpA from transposon Tn554.
Probab=99.95 E-value=1.3e-27 Score=198.01 Aligned_cols=153 Identities=18% Similarity=0.258 Sum_probs=125.6
Q ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEE--EECCCCC---------CCCCHHHHHHCCHHHHH
Q ss_conf 652344566664037808999989898618873100256640144--3023321---------13310243311216899
Q gi|254780134|r 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK---------TQKTGTIITVELPDGFM 242 (348)
Q Consensus 174 ~t~~ei~~~~~~~~~~~~~~~~~~l~~~TG~R~~Ei~~L~~~did--~~~i~~~---------~~Kt~~~~~vpl~~~l~ 242 (348)
T Consensus 1 LT~~Ev~~ll~a~~-~~Rd~~i~~ll~~TGlR~gE~~~L~~~Did~~~~~i~i~~~~~~~~~~~~K~~~~r~vpi~~~l~ 79 (186)
T cd01194 1 LTPSEVQRLINACG-NLRDKFLFALLYETGLRIGEALGLRIEDIDLAENQIWLVPREDNANGARAKSGRERRIPVSQYLI 79 (186)
T ss_pred CCHHHHHHHHHHCC-HHHHHHHHHHHHHHCCCHHHHHHCCHHHCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCHHHH
T ss_conf 99899999998154-03899999999996989888970889872576998999854455555203688425887779999
Q ss_pred HHHHHH--------CCCCCCCCCCCC----CCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 999642--------013322112224----57758778999999999983889981402699999999848998899999
Q gi|254780134|r 243 KLLAMT--------PIGKETFFINND----KQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMAT 310 (348)
Q Consensus 243 ~~l~~~--------~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~agi~~~~H~lRht~at~l~~~G~~~~~i~~~ 310 (348)
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~H~lRHT~at~l~~~G~~~~~v~~~ 159 (186)
T cd01194 80 DLYVDYVTEIYYLEELESDYVFVNVKGGNQGKPLNYTDVYDLVRRLKKKTGIDFTPHMFRHTHATELIRAGWSIEVVADR 159 (186)
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHH
T ss_conf 99999999976332157774456335775688777999999999999984998774575999999999879999999998
Q ss_pred HCCCCHHHH-HHHHHHHH
Q ss_conf 649998999-99999998
Q gi|254780134|r 311 YGWKTVDQA-ETYTKGAD 327 (348)
Q Consensus 311 lGHss~~~t-~~Y~~~~~ 327 (348)
T Consensus 160 lGH~~~~tT~~~Y~h~~~ 177 (186)
T cd01194 160 LGHAHVQTTLNTYGHLSE 177 (186)
T ss_pred HCCCCHHHHHHHHHCCCH
T ss_conf 289987999998456899