HHsearch alignment for GI: 254780134 and conserved domain: cd01195
>cd01195 INT_Tn544B_C Tn544B and related transposases, DNA breaking-rejoining enzymes, integrase/recombinases, catalytic domain. This CD includes various bacterial transposases similar to TnpB from transposon Tn554.
Probab=99.94 E-value=3.3e-26 Score=188.93 Aligned_cols=155 Identities=17% Similarity=0.124 Sum_probs=116.9
Q ss_pred CCCHHHHHHHHHHHCC-CCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEE-----C--CCCCCCCCH-HHHHHCCHHHHHH
Q ss_conf 1652344566664037-80899998989861887310025664014430-----2--332113310-2433112168999
Q gi|254780134|r 173 PWTKEDMQQFKSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----I--FSIKTQKTG-TIITVELPDGFMK 243 (348)
Q Consensus 173 ~~t~~ei~~~~~~~~~-~~~~~~~~~l~~~TG~R~~Ei~~L~~~did~~-----~--i~~~~~Kt~-~~~~vpl~~~l~~ 243 (348)
T Consensus 2 ~i~~~~~~~l~~~l~~l~~~~~~~~~ll~~TGlRisE~l~L~~~~i~~~~~~~~~~~~~~~~~k~~~k~r~ipi~~~~~~ 81 (195)
T cd01195 2 FIPEFVLEQLNSHIDKLPEYIIPMTMIVQETGMRISDLLTLKKNCLLEDKDGDFFYKYYQCIWKTKIKEHIIPISKKVAL 81 (195)
T ss_pred CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHCCCCCEEEEEEEECCCCCEEEEEECCHHHHH
T ss_conf 89989999999999868998999999999808739999638611455503655526799996798874368867899999
Q ss_pred HHHHHC-----------CCCCCCCCCCC----CCCCCHHHHHHHHHHHHHHCCC--------CCCCCHHHHHHHHHHHHC
Q ss_conf 996420-----------13322112224----5775877899999999998388--------998140269999999984
Q gi|254780134|r 244 LLAMTP-----------IGKETFFINND----KQKMNATQFSIWFKAKATKAGV--------NKSAHGVRKFSATISADA 300 (348)
Q Consensus 244 ~l~~~~-----------~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~agi--------~~~~H~lRht~at~l~~~ 300 (348)
T Consensus 82 ~l~~~~~~~~~~~~~~~~~~~~lF~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~H~lRHT~aT~L~~~ 161 (195)
T cd01195 82 LIKVREDKTKELSTEDNNPSEYLFPRYDGKPKGQPTNKQAFRGELNKLAYEKNIVDKSGEIYHFHAHAFRHTVATRMINN 161 (195)
T ss_pred HHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHC
T ss_conf 99999999898730206988548767889808887619999999999999818653347725668887748999999986
Q ss_pred CCCHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 899889999964999899999999998
Q gi|254780134|r 301 GATAHELMATYGWKTVDQAETYTKGAD 327 (348)
Q Consensus 301 G~~~~~i~~~lGHss~~~t~~Y~~~~~ 327 (348)
T Consensus 162 Gv~i~~Iq~~LGH~s~~tT~~Yahv~~ 188 (195)
T cd01195 162 GMPIHIIQKFLGHESPEMTSRYAHIFD 188 (195)
T ss_pred CCCHHHHHHHHCCCCHHHHHHHHCCCH
T ss_conf 999999999948999899999885798