HHsearch alignment for GI: 254780134 and conserved domain: cd01196
>cd01196 INT_VanD VanD integrase, IntD, and related integrases, DNA breaking-rejoining enzymes, integrase/recombinases, N- and C-terminal domains. This CD includes various bacterial integrases including those similar to IntD, a putative integrase-like protein, a component of the vanD glycopeptide resistance cluster in Enterococcus faecium BM4339. Members of this CD are predominantly bacterial in origin.
Probab=100.00 E-value=1e-36 Score=257.21 Aligned_cols=238 Identities=16% Similarity=0.137 Sum_probs=190.4
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999835543569788999999999999995699958969999999887515--99789999999999999644552001
Q gi|254780134|r 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSSAIQFLTSMRVLFKWAVRQEYV 153 (348)
Q Consensus 76 ~~y~~~~~~~~l~~~T~~~~~~~~~~~~~~~g~~~l~~it~~~i~~~~~~~~--~~~~t~n~~~~~l~~~~~~a~~~~~i 153 (348)
T Consensus 2 ~~yL~e---~g~S~~Ti~sY~~dl~~ff~-----~~~~i~~~~i~~y~~~L~~~~~~~Tin~~lsalr~F~~fl~~~~~~ 73 (263)
T cd01196 2 EEYLYK---NNLSKNTVSSYLRTVVQYFL-----NGKELTKPNLLEYKGYLQENFKAQTVNLRLQGINKYLEFIGWHDLK 73 (263)
T ss_pred HHHHHH---CCCCHHHHHHHHHHHHHHHC-----CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 587967---69789999999999999971-----5588999999999999996898999999999999999996554786
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCC--CCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCHH
Q ss_conf 05665103464324444211652344566664037--8089999898986188731002566401443023321133102
Q gi|254780134|r 154 AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 (348)
Q Consensus 154 ~~NP~~~v~~~~~~~~~~~~~t~~ei~~~~~~~~~--~~~~~~~~~l~~~TG~R~~Ei~~L~~~did~~~i~~~~~Kt~~ 231 (348)
T Consensus 74 ----~k~~k-~~~~~~l~~~l~~~e~~~l~~~~~~~~~~r~~~ii~lL~~tGlRvsEl~~L~~~di~~~~~~i~-~KG~K 147 (263)
T cd01196 74 ----LKFVK-VQQKAFLENVISDADYKFLKTALKADGNEEWYFVVWFLAATGARVSELIHIKVEHVQTGYADIY-SKGGK 147 (263)
T ss_pred ----CCCCC-CCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHCCCHHHHCCCCEEEE-ECCCC
T ss_conf ----55678-8888999998999999999976313667769999999998499999998368988266864999-55993
Q ss_pred HHHHCCHHHHHHHH----HHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC---CCCCHHHHHHHHHHHHCCCCH
Q ss_conf 43311216899999----64201332211222457758778999999999983889---981402699999999848998
Q gi|254780134|r 232 IITVELPDGFMKLL----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATA 304 (348)
Q Consensus 232 ~~~vpl~~~l~~~l----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~agi~---~~~H~lRht~at~l~~~G~~~ 304 (348)
T Consensus 148 ~R~v~i~~~~~~~l~~y~~~~~~~~~~lF~~~~g~~l~~~~i~~~~k~~~~~agi~~~~~~PH~lRHtfAt~ll~~g~dl 227 (263)
T cd01196 148 IRRLYIPKNLRVEALKWLKELNLDSGYIFLNRFGKPITARGIAQQLKNYAAKYKMNPRVVYPHSFRHLFAKNFLAKYNDL 227 (263)
T ss_pred EEEEEECHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCH
T ss_conf 78873079999999999997288657716699949888999999999999985999877887226999999999869999
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 89999964999899999999998
Q gi|254780134|r 305 HELMATYGWKTVDQAETYTKGAD 327 (348)
Q Consensus 305 ~~i~~~lGHss~~~t~~Y~~~~~ 327 (348)
T Consensus 228 ~~vq~lLGH~si~TT~iY~~~~~ 250 (263)
T cd01196 228 ALLADLMGHESIETTRIYLRKTA 250 (263)
T ss_pred HHHHHHHCCCCHHHHHHHHHCCH
T ss_conf 99999958998789999880799