HHsearch alignment for GI: 254780134 and conserved domain: cd01199

>cd01199 INT_Tn1545_C Tn1545-related conjugative transposon integrases, site-specific recombinases, DNA breaking-rejoining enzymes, C-terminal catalytic domain. This CD includes bacterial (gram positive) and phage integrases, including those similar to Tn1545, Tn5252, and Tn5276 conjugative transposon integrases and Lactobacillus phage phi adh integrase.
Probab=99.94  E-value=8.6e-27  Score=192.71  Aligned_cols=165  Identities=15%  Similarity=0.231  Sum_probs=122.3

Q ss_pred             CCCHHHHHHHHHHHCC---CCHHHHHHHHHHHCCCCCCCCCCCCCCEEE--EECCCCC----------------CCCCHH
Q ss_conf             1652344566664037---808999989898618873100256640144--3023321----------------133102
Q gi|254780134|r  173 PWTKEDMQQFKSFWSE---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----------------TQKTGT  231 (348)
Q Consensus       173 ~~t~~ei~~~~~~~~~---~~~~~~~~~l~~~TG~R~~Ei~~L~~~did--~~~i~~~----------------~~Kt~~  231 (348)
T Consensus         1 yLt~eEi~~ll~~~~~~~~~~~~~~ii~ll~~TGlR~~Ei~~L~~~did~~~~~i~i~~~~~~~~~~~~~~~~~~~Kt~~   80 (205)
T cd01199           1 YLEKNELKALLDVLNSYKNNQLYADILEFLFLTGMRIGELLALQEKDIDFENKLINIDGTLDSHTGKEENGYKDTPKTKS   80 (205)
T ss_pred             CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHCCCHHHCCCCCCEEEEEEEEEEECCCCCCCEECCCCCCC
T ss_conf             93989999999705147787699999999999773488897590988065589899977886412566662434577888


Q ss_pred             H-HHHCCHHHHHHHHHHHC------------CCCCCCCCCCCCCCCCHHH-HHHHHHHHHHHCCCC----CCCCHHHHHH
Q ss_conf             4-33112168999996420------------1332211222457758778-999999999983889----9814026999
Q gi|254780134|r  232 I-ITVELPDGFMKLLAMTP------------IGKETFFINNDKQKMNATQ-FSIWFKAKATKAGVN----KSAHGVRKFS  293 (348)
Q Consensus       232 ~-~~vpl~~~l~~~l~~~~------------~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~agi~----~~~H~lRht~  293 (348)
T Consensus        81 ~~R~vpl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lf~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~lRHT~  160 (205)
T cd01199          81 SIRTISLSERAVEIIKRFIKRNKFDKFNPDYKDSDFLFTNKKGNPLDLGPINSKILSKFLKDLGSQSKKHVTTHIFRHTH  160 (205)
T ss_pred             CEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH
T ss_conf             63686179999999999999714410354568776377616898476408999999999998575546775764559999


Q ss_pred             HHHHHHCCCCHHHHHHHHCCCCHHHH-HHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999848998899999649998999-99999998999999999999
Q gi|254780134|r  294 ATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRI  339 (348)
Q Consensus       294 at~l~~~G~~~~~i~~~lGHss~~~t-~~Y~~~~~~~r~a~~a~~~l  339 (348)
T Consensus       161 at~l~~~G~~~~~v~~~lGHss~~tT~~iY~h~~~~~--~~e~~~kl  205 (205)
T cd01199         161 ISFLAEEGVPLKAIMDRVGHSDGKTTLRIYSHVTEKM--KDEIVKKL  205 (205)
T ss_pred             HHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCCHHH--HHHHHHCC
T ss_conf             9999986999999999867998899988866169899--99999609