HHsearch alignment for GI: 254780134 and conserved domain: cd01199
>cd01199 INT_Tn1545_C Tn1545-related conjugative transposon integrases, site-specific recombinases, DNA breaking-rejoining enzymes, C-terminal catalytic domain. This CD includes bacterial (gram positive) and phage integrases, including those similar to Tn1545, Tn5252, and Tn5276 conjugative transposon integrases and Lactobacillus phage phi adh integrase.
Probab=99.94 E-value=8.6e-27 Score=192.71 Aligned_cols=165 Identities=15% Similarity=0.231 Sum_probs=122.3
Q ss_pred CCCHHHHHHHHHHHCC---CCHHHHHHHHHHHCCCCCCCCCCCCCCEEE--EECCCCC----------------CCCCHH
Q ss_conf 1652344566664037---808999989898618873100256640144--3023321----------------133102
Q gi|254780134|r 173 PWTKEDMQQFKSFWSE---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----------------TQKTGT 231 (348)
Q Consensus 173 ~~t~~ei~~~~~~~~~---~~~~~~~~~l~~~TG~R~~Ei~~L~~~did--~~~i~~~----------------~~Kt~~ 231 (348)
T Consensus 1 yLt~eEi~~ll~~~~~~~~~~~~~~ii~ll~~TGlR~~Ei~~L~~~did~~~~~i~i~~~~~~~~~~~~~~~~~~~Kt~~ 80 (205)
T cd01199 1 YLEKNELKALLDVLNSYKNNQLYADILEFLFLTGMRIGELLALQEKDIDFENKLINIDGTLDSHTGKEENGYKDTPKTKS 80 (205)
T ss_pred CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHCCCHHHCCCCCCEEEEEEEEEEECCCCCCCEECCCCCCC
T ss_conf 93989999999705147787699999999999773488897590988065589899977886412566662434577888
Q ss_pred H-HHHCCHHHHHHHHHHHC------------CCCCCCCCCCCCCCCCHHH-HHHHHHHHHHHCCCC----CCCCHHHHHH
Q ss_conf 4-33112168999996420------------1332211222457758778-999999999983889----9814026999
Q gi|254780134|r 232 I-ITVELPDGFMKLLAMTP------------IGKETFFINNDKQKMNATQ-FSIWFKAKATKAGVN----KSAHGVRKFS 293 (348)
Q Consensus 232 ~-~~vpl~~~l~~~l~~~~------------~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~agi~----~~~H~lRht~ 293 (348)
T Consensus 81 ~~R~vpl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lf~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~lRHT~ 160 (205)
T cd01199 81 SIRTISLSERAVEIIKRFIKRNKFDKFNPDYKDSDFLFTNKKGNPLDLGPINSKILSKFLKDLGSQSKKHVTTHIFRHTH 160 (205)
T ss_pred CEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH
T ss_conf 63686179999999999999714410354568776377616898476408999999999998575546775764559999
Q ss_pred HHHHHHCCCCHHHHHHHHCCCCHHHH-HHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999848998899999649998999-99999998999999999999
Q gi|254780134|r 294 ATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRI 339 (348)
Q Consensus 294 at~l~~~G~~~~~i~~~lGHss~~~t-~~Y~~~~~~~r~a~~a~~~l 339 (348)
T Consensus 161 at~l~~~G~~~~~v~~~lGHss~~tT~~iY~h~~~~~--~~e~~~kl 205 (205)
T cd01199 161 ISFLAEEGVPLKAIMDRVGHSDGKTTLRIYSHVTEKM--KDEIVKKL 205 (205)
T ss_pred HHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCCHHH--HHHHHHCC
T ss_conf 9999986999999999867998899988866169899--99999609