HHsearch alignment of GI: 254780134 and MMDB domain: 1ae9_A_
>1ae9_A (A:) Lambda integrase; DNA recombination, site-specific recombination; 1.90A {Bacteriophage lambda}
Probab=99.78 E-value=3.1e-18 Score=136.68 Aligned_cols=154 Identities=12% Similarity=0.104 Sum_probs=99.7
Q ss_pred CCCCHHHHHHHHHHHCC-CCHHHHHHHHHHHCCCCCCCCCCCCCCEEEE--ECCCCCCCCCHHHHH--HC----CHHHHH
Q ss_conf 11652344566664037-8089999898986188731002566401443--023321133102433--11----216899
Q gi|254780134|r 172 RPWTKEDMQQFKSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIIT--VE----LPDGFM 242 (348)
Q Consensus 172 ~~~t~~ei~~~~~~~~~-~~~~~~~~~l~~~TG~R~~Ei~~L~~~did~--~~i~~~~~Kt~~~~~--vp----l~~~l~ 242 (348)
++++++|+.+|++.+.. +...++++.|+++||||+||+++|+|+|||. +.+.+...+++.... .+ ......
T Consensus 2 r~lt~~ei~~l~~~~~~~~~~~~~~~~l~~~tGlR~~Ei~~L~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (179)
T 1ae9_A 2 SRLTADEYLKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTALHIDALGISMKE 81 (179)
T ss_dssp CCCCHHHHHHHHHHGGGSCHHHHHHHHHHHHHCCCHHHHHHCBGGGEETTEEEEECTTTCCEEEEETTCEEGGGTEEHHH
T ss_pred CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHCCCCCEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHHHH
T ss_conf 98999999999998866889999999999997789144402502255310122213465431430365166777775443
Q ss_pred HHHHH-HCCCCCCCCCCCCCCCCCHHHHHHHHHHH-HHHC-CC--CCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHH
Q ss_conf 99964-20133221122245775877899999999-9983-88--99814026999999998489988999996499989
Q gi|254780134|r 243 KLLAM-TPIGKETFFINNDKQKMNATQFSIWFKAK-ATKA-GV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317 (348)
Q Consensus 243 ~~l~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~a-gi--~~~~H~lRht~at~l~~~G~~~~~i~~~lGHss~~ 317 (348)
..... ........+....+...........+... .... +. ..+.|++||++++.+.++|+++..||++|||++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~~i~~~lGH~~~~ 161 (179)
T 1ae9_A 82 TLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELRSLSARLYEKQISDKFAQHLLGHKSDT 161 (179)
T ss_dssp HHHHHHHHTCCSBSSCCTTSCCCCHHHHHHHHHHHHHHHTCCCSSSCCCTTHHHHHHHHHHHHHTCHHHHHHHHTC----
T ss_pred HHHCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHH
T ss_conf 32101245765313432157876532136666666531123445430268899888999999499999999993899999
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q gi|254780134|r 318 QAETYTKG 325 (348)
Q Consensus 318 ~t~~Y~~~ 325 (348)
||++|.+.
T Consensus 162 tT~~Y~~~ 169 (179)
T 1ae9_A 162 MASQFRDD 169 (179)
T ss_dssp ----CEEC
T ss_pred HHHHHHHC
T ss_conf 99998736