HHsearch alignment of GI: 254780134 and MMDB domain: 2a3v_A_1-94

>2a3v_A (A:1-94) Site-specific recombinase INTI4; protein-DNA complex, recombination; HET: DNA; 2.80A {Vibrio cholerae o1 biovar eltor str}
Probab=99.20  E-value=8.1e-11  Score=88.40  Aligned_cols=88  Identities=10%  Similarity=0.023  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999983554356978899999999999999569995896999999988751----599789999999999999644
Q gi|254780134|r   72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----KHTPSSAIQFLTSMRVLFKWA  147 (348)
Q Consensus        72 ~~l~~~y~~~~~~~~l~~~T~~~~~~~~~~~~~~~g~~~l~~it~~~i~~~~~~~----~~~~~t~n~~~~~l~~~~~~a  147 (348)
                      .++++.|+.....++++++|+..|+..++.|...+|+.++.+|+..+|..|+..+    +.++.|+|..++.|++||+|+
T Consensus         3 ~~~i~~~l~~l~~~~~s~~Ti~~y~~~l~~f~~~l~~~~~~~i~~~~i~~~~~~l~~~~~~s~~T~~~~l~~lr~f~~~~   82 (94)
T 2a3v_A            3 SQFLLSVREFMQTRYYAKKTIEAYLHWITRYIHFHNKKHPSLMGDKEVEEFLTYLAVQGKVATKTQSLALNSLSFLYKEI   82 (94)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSSSCCGGGCCHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             89999999999984989999999999999999997107944499999999999999838988326999999998887510


Q ss_pred             HHHHHHHHHHHH
Q ss_conf             552001056651
Q gi|254780134|r  148 VRQEYVAINPCL  159 (348)
Q Consensus       148 ~~~~~i~~NP~~  159 (348)
                      ++.|+++.||++
T Consensus        83 ~~~~~i~~nP~~   94 (94)
T 2a3v_A           83 LKTPLSLEIRFQ   94 (94)
T ss_dssp             SSCCCCTTCCCC
T ss_pred             HCCCCCCCCCCH
T ss_conf             001245432200