HHsearch alignment of GI: 254780134 and MMDB domain: 2khv_A_
>2khv_A (A:) Phage integrase; solution structure, GFT, NESG, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Nitrosospira multiformis atcc 25196}
Probab=99.53 E-value=2.8e-14 Score=110.90 Aligned_cols=102 Identities=12% Similarity=0.089 Sum_probs=93.4
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HHHHHHCCCCHHHCCHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHH
Q ss_conf 87899999999835543569788999999999-99999569995896999999988751-59978999999999999964
Q gi|254780134|r 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQFLTSMRVLFKW 146 (348)
Q Consensus 69 ~Tl~~l~~~y~~~~~~~~l~~~T~~~~~~~~~-~~~~~~g~~~l~~it~~~i~~~~~~~-~~~~~t~n~~~~~l~~~~~~ 146 (348)
+||+++++.|+.......++++|+..|...++ ++.+.+|+.++.+|++.+++++++.+ ..++.|+|++++.|+++|+|
T Consensus 1 iT~~~~~~~~~~~~~~~~~~~~T~~~~~~~~~~~i~~~~g~~~i~~it~~~i~~~~~~~~~~s~~t~~~~~~~l~~~f~~ 80 (106)
T 2khv_A 1 MTFSECAALYIKAHRSSWKNTKHADQWTNTIKTYCGPVIGPLSVQDVDTKLIMKVLDPIWEQKPETASRLRGRIESVLDW 80 (106)
T ss_dssp CBHHHHHHHHHHTTGGGGTTSTHHHHHHHHHHHHTHHHHTTSBSSSCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 97999999999984204798669999999999873523499649997679999999999963289999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 455200105665103464324444
Q gi|254780134|r 147 AVRQEYVAINPCLSVERPKRKTEG 170 (348)
Q Consensus 147 a~~~~~i~~NP~~~v~~~~~~~~~ 170 (348)
|++.|+++.||+.+|+.++...+.
T Consensus 81 A~~~~~i~~Np~~~i~~~~~~~k~ 104 (106)
T 2khv_A 81 ATVRGYREGDNPARWRGYLEHHHH 104 (106)
T ss_dssp HHHHTSSCSCCTTSCSSTTTTTTC
T ss_pred HHHCCCCCCCCHHHHHCCCCCCCC
T ss_conf 999297678981888730201434