HHsearch alignment of GI: 254780134 and MMDB domain: 2kj9_A_
>2kj9_A (A:) Integrase; DNA_BRE_C superfamily, INTB, PSI-2, structural genomics, protein structure initiative; NMR {Pectobacterium atrosepticum}
Probab=99.48 E-value=1.5e-13 Score=106.21 Aligned_cols=106 Identities=14% Similarity=0.224 Sum_probs=93.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HHHHHHCCCCHHHCCHHHHHHHHHHHCC--CHHHHHHHHHH
Q ss_conf 23234487899999999835543569788999999999-9999956999589699999998875159--97899999999
Q gi|254780134|r 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTS 139 (348)
Q Consensus 63 ~~~~~~~Tl~~l~~~y~~~~~~~~l~~~T~~~~~~~~~-~~~~~~g~~~l~~it~~~i~~~~~~~~~--~~~t~n~~~~~ 139 (348)
.......||+++++.|+... .+++++|...|+..++ ++.+.||+.++.+|+..+|+.+++.+.. ++.++++.++.
T Consensus 5 ~~~~~~~Tf~~~~~~~l~~~--~~~~~~T~~~~~~~~~~~i~~~~g~~~i~~it~~~i~~~~~~~~~~~s~~t~~~~~~~ 82 (118)
T 2kj9_A 5 EKRNNTRAFKTVAKSWFATK--TTWSEDYQRSVWTRLETYLFPDIGNKDIAELDTGDLLVPIKKIEKLGYLEIAMRVKQY 82 (118)
T ss_dssp SSSSSCSBHHHHHHHHHHTC--CSSCHHHHHHHHHHHHHTSSTTGGGSBGGGCCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 87773477999999999987--8888879999999999887898678859995589999999999990792889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 9999964455200105665103464324444
Q gi|254780134|r 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170 (348)
Q Consensus 140 l~~~~~~a~~~~~i~~NP~~~v~~~~~~~~~ 170 (348)
|+++|+||++.|+|+.||+..|+.++.....
T Consensus 83 l~~if~~Av~~~~i~~NP~~~v~~~k~~~~~ 113 (118)
T 2kj9_A 83 ATAIMRYAVQQKMIRFNPAYDLEGAVQKLEH 113 (118)
T ss_dssp HHHHHHHHHHTTSSSSCHHHHCCSCSSSSSS
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHCCCCCC
T ss_conf 9999999998788121848889876689865