HHsearch alignment of GI: 254780134 and MMDB domain: 2kj9_A_

>2kj9_A (A:) Integrase; DNA_BRE_C superfamily, INTB, PSI-2, structural genomics, protein structure initiative; NMR {Pectobacterium atrosepticum}
Probab=99.48  E-value=1.5e-13  Score=106.21  Aligned_cols=106  Identities=14%  Similarity=0.224  Sum_probs=93.4

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HHHHHHCCCCHHHCCHHHHHHHHHHHCC--CHHHHHHHHHH
Q ss_conf             23234487899999999835543569788999999999-9999956999589699999998875159--97899999999
Q gi|254780134|r   63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTS  139 (348)
Q Consensus        63 ~~~~~~~Tl~~l~~~y~~~~~~~~l~~~T~~~~~~~~~-~~~~~~g~~~l~~it~~~i~~~~~~~~~--~~~t~n~~~~~  139 (348)
                      .......||+++++.|+...  .+++++|...|+..++ ++.+.||+.++.+|+..+|+.+++.+..  ++.++++.++.
T Consensus         5 ~~~~~~~Tf~~~~~~~l~~~--~~~~~~T~~~~~~~~~~~i~~~~g~~~i~~it~~~i~~~~~~~~~~~s~~t~~~~~~~   82 (118)
T 2kj9_A            5 EKRNNTRAFKTVAKSWFATK--TTWSEDYQRSVWTRLETYLFPDIGNKDIAELDTGDLLVPIKKIEKLGYLEIAMRVKQY   82 (118)
T ss_dssp             SSSSSCSBHHHHHHHHHHTC--CSSCHHHHHHHHHHHHHTSSTTGGGSBGGGCCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHCCCCHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             87773477999999999987--8888879999999999887898678859995589999999999990792889999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             9999964455200105665103464324444
Q gi|254780134|r  140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEG  170 (348)
Q Consensus       140 l~~~~~~a~~~~~i~~NP~~~v~~~~~~~~~  170 (348)
                      |+++|+||++.|+|+.||+..|+.++.....
T Consensus        83 l~~if~~Av~~~~i~~NP~~~v~~~k~~~~~  113 (118)
T 2kj9_A           83 ATAIMRYAVQQKMIRFNPAYDLEGAVQKLEH  113 (118)
T ss_dssp             HHHHHHHHHHTTSSSSCHHHHCCSCSSSSSS
T ss_pred             HHHHHHHHHHCCCCCCCCHHHHHHHCCCCCC
T ss_conf             9999999998788121848889876689865