HHsearch alignment of GI: 254780134 and MMDB domain: 2kkv_A_

>2kkv_A (A:) Integrase; protein structure, PSI, nesgc, structural genomics, protein structure initiative, northeast structural genomics consortium; NMR {Salmonella enterica subsp}
Probab=99.48  E-value=4.7e-14  Score=109.45  Aligned_cols=113  Identities=16%  Similarity=0.266  Sum_probs=97.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HHHHHHCCCCHHHCCHHHHHHHHHHHC--CCHHHHHHHHHHHH
Q ss_conf             234487899999999835543569788999999999-999995699958969999999887515--99789999999999
Q gi|254780134|r   65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK--HTPSSAIQFLTSMR  141 (348)
Q Consensus        65 ~~~~~Tl~~l~~~y~~~~~~~~l~~~T~~~~~~~~~-~~~~~~g~~~l~~it~~~i~~~~~~~~--~~~~t~n~~~~~l~  141 (348)
                      .....||.+++++|+...  .+++++|...|+..++ ++.+.||+.++.+|++.+|++|++.+.  .++++++..++.|+
T Consensus         3 ~~~~~t~~~~~~~~~~~~--~~~~~~T~~~y~~~~~~~i~~~~g~~~i~~it~~~i~~~~~~l~~~~~~~t~~~~~~~l~   80 (121)
T 2kkv_A            3 NSGAYTFETIAREWHESN--KRWSEDHRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKEVDTSGKHDVAQRLQQRVT   80 (121)
T ss_dssp             SCCCCSHHHHHHHHHTTC--CSSCHHHHHHHHHHHHHHHSSSSTTSCTTCCCSGGGHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf             424048999999999977--978884999999999989999938826999763766777748750478799999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCC--CCCCCCCCCCHHHH
Q ss_conf             999644552001056651034643--24444211652344
Q gi|254780134|r  142 VLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKEDM  179 (348)
Q Consensus       142 ~~~~~a~~~~~i~~NP~~~v~~~~--~~~~~~~~~t~~ei  179 (348)
                      ++|+||++.|++..||+.+++.+.  .......+++.+||
T Consensus        81 ~~~~~Av~~~~i~~NP~~~v~~~~~~~~~~~~~~lt~~Ei  120 (121)
T 2kkv_A           81 AIMRYAVQNDYIDSNPASDMAGALSTTKARHYPLEHHHHH  120 (121)
T ss_dssp             HHHHHHHHTTSSCSCSCSSSSCCCSCCCCCSSCCTTCCCC
T ss_pred             HHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf             9999999878901186878987469999898998766677