HHsearch alignment of GI: 254780134 and MMDB domain: 2kkv_A_
>2kkv_A (A:) Integrase; protein structure, PSI, nesgc, structural genomics, protein structure initiative, northeast structural genomics consortium; NMR {Salmonella enterica subsp}
Probab=99.48 E-value=4.7e-14 Score=109.45 Aligned_cols=113 Identities=16% Similarity=0.266 Sum_probs=97.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HHHHHHCCCCHHHCCHHHHHHHHHHHC--CCHHHHHHHHHHHH
Q ss_conf 234487899999999835543569788999999999-999995699958969999999887515--99789999999999
Q gi|254780134|r 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK--HTPSSAIQFLTSMR 141 (348)
Q Consensus 65 ~~~~~Tl~~l~~~y~~~~~~~~l~~~T~~~~~~~~~-~~~~~~g~~~l~~it~~~i~~~~~~~~--~~~~t~n~~~~~l~ 141 (348)
.....||.+++++|+... .+++++|...|+..++ ++.+.||+.++.+|++.+|++|++.+. .++++++..++.|+
T Consensus 3 ~~~~~t~~~~~~~~~~~~--~~~~~~T~~~y~~~~~~~i~~~~g~~~i~~it~~~i~~~~~~l~~~~~~~t~~~~~~~l~ 80 (121)
T 2kkv_A 3 NSGAYTFETIAREWHESN--KRWSEDHRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKEVDTSGKHDVAQRLQQRVT 80 (121)
T ss_dssp SCCCCSHHHHHHHHHTTC--CSSCHHHHHHHHHHHHHHHSSSSTTSCTTCCCSGGGHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 424048999999999977--978884999999999989999938826999763766777748750478799999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCC--CCCCCCCCCCHHHH
Q ss_conf 999644552001056651034643--24444211652344
Q gi|254780134|r 142 VLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKEDM 179 (348)
Q Consensus 142 ~~~~~a~~~~~i~~NP~~~v~~~~--~~~~~~~~~t~~ei 179 (348)
++|+||++.|++..||+.+++.+. .......+++.+||
T Consensus 81 ~~~~~Av~~~~i~~NP~~~v~~~~~~~~~~~~~~lt~~Ei 120 (121)
T 2kkv_A 81 AIMRYAVQNDYIDSNPASDMAGALSTTKARHYPLEHHHHH 120 (121)
T ss_dssp HHHHHHHHTTSSCSCSCSSSSCCCSCCCCCSSCCTTCCCC
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 9999999878901186878987469999898998766677