HHsearch results for GI: 254780134 and protein with PDBid: 1a0p_A

>1a0p_A Site-specific recombinase XERD; DNA binding, DNA recombination; 2.50A {Escherichia coli} SCOP: a.60.9.1 d.163.1.1
Probab=100.00  E-value=2.4e-33  Score=233.93  Aligned_cols=253  Identities=17%  Similarity=0.231  Sum_probs=189.3

Q ss_pred             HHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHC--CCCHHHCCHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHH
Q ss_conf             99999983554-35697889999999999999956--99958969999999887515---99789999999999999644
Q gi|254780134|r   74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMRVLFKWA  147 (348)
Q Consensus        74 l~~~y~~~~~~-~~l~~~T~~~~~~~~~~~~~~~g--~~~l~~it~~~i~~~~~~~~---~~~~t~n~~~~~l~~~~~~a  147 (348)
                      -+++|+..... ++++++|+..|+..+++|..+++  ..++.+|+..+|.+|+..+.   .++.|++.+++.|+.+|+||
T Consensus         5 ~i~~fl~~l~~er~ls~~T~~~Y~~~l~~f~~~l~~~~~~~~~i~~~~i~~~~~~l~~~~~s~~t~~~~l~~l~~~~~~~   84 (290)
T 1a0p_A            5 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKATSSARLLSAVRRLFQYL   84 (290)
T ss_dssp             HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHTSCCTTTCCHHHHHHHHHSCC-------CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999869089999999999999999998859993769999999999999877998899999999999999999


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHH-H---CCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEE--EEC
Q ss_conf             55200105665103464324444211652344566664-0---37808999989898618873100256640144--302
Q gi|254780134|r  148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-W---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNI  221 (348)
Q Consensus       148 ~~~~~i~~NP~~~v~~~~~~~~~~~~~t~~ei~~~~~~-~---~~~~~~~~~~~l~~~TG~R~~Ei~~L~~~did--~~~  221 (348)
                      .+.+++..||+..+..++............+....... .   ......++++.|+++||||.+|+++|+|+|||  ++.
T Consensus        85 ~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~tG~R~~Ei~~L~~~did~~~~~  164 (290)
T 1a0p_A           85 YREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGV  164 (290)
T ss_dssp             HHTTSSSSCTTSCC----------CCCCHHHHHHHHHCSCTTSHHHHHHHHHHHHHHHHCCCHHHHTTCBGGGEETTTTE
T ss_pred             HHHCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHCCHHHCCCCCCE
T ss_conf             98243346817650377766667651008999998752100134118999999999995877899980949995757998


Q ss_pred             CCCCCCCCHHHHHHCCHHHHHHHHHH----------HCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC---CCCCH
Q ss_conf             33211331024331121689999964----------201332211222457758778999999999983889---98140
Q gi|254780134|r  222 FSIKTQKTGTIITVELPDGFMKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG  288 (348)
Q Consensus       222 i~~~~~Kt~~~~~vpl~~~l~~~l~~----------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~agi~---~~~H~  288 (348)
                      +. ...|+++.+.++..+.....+..          ........+....+.+.....+...++..+..+|+.   .++|+
T Consensus       165 i~-~~~K~~k~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~H~  243 (290)
T 1a0p_A          165 VR-VIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHV  243 (290)
T ss_dssp             EE-EECSSSCEEEEECCHHHHHHHHHHHHHTHHHHHTTCCCCBSSBCTTSSBCCHHHHHHHHHHHHHHTTCCGGGCCHHH
T ss_pred             EE-ECCCCCCEEEECCHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             98-66889940141132777778999998500111013445554533356654237899999999999457899987451


Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             269999999984899889999964999899999999998
Q gi|254780134|r  289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD  327 (348)
Q Consensus       289 lRht~at~l~~~G~~~~~i~~~lGHss~~~t~~Y~~~~~  327 (348)
                      |||||||.+.++|+++.+||.+|||+|+.||++|++..+
T Consensus       244 lRht~at~l~~~G~~~~~i~~~lGH~s~~tT~~Y~~~~~  282 (290)
T 1a0p_A          244 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAT  282 (290)
T ss_dssp             HHHHHHHHHHHHCSSCGGGSSCC--CCCCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHCCCH
T ss_conf             779999999987899999998818998899999987899