HHsearch results for GI: 254780134 and protein with PDBid: 1a0p_A
>1a0p_A Site-specific recombinase XERD; DNA binding, DNA recombination; 2.50A {Escherichia coli} SCOP: a.60.9.1 d.163.1.1
Probab=100.00 E-value=2.4e-33 Score=233.93 Aligned_cols=253 Identities=17% Similarity=0.231 Sum_probs=189.3
Q ss_pred HHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHC--CCCHHHCCHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999983554-35697889999999999999956--99958969999999887515---99789999999999999644
Q gi|254780134|r 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMRVLFKWA 147 (348)
Q Consensus 74 l~~~y~~~~~~-~~l~~~T~~~~~~~~~~~~~~~g--~~~l~~it~~~i~~~~~~~~---~~~~t~n~~~~~l~~~~~~a 147 (348)
-+++|+..... ++++++|+..|+..+++|..+++ ..++.+|+..+|.+|+..+. .++.|++.+++.|+.+|+||
T Consensus 5 ~i~~fl~~l~~er~ls~~T~~~Y~~~l~~f~~~l~~~~~~~~~i~~~~i~~~~~~l~~~~~s~~t~~~~l~~l~~~~~~~ 84 (290)
T 1a0p_A 5 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKATSSARLLSAVRRLFQYL 84 (290)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHTSCCTTTCCHHHHHHHHHSCC-------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999869089999999999999999998859993769999999999999877998899999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHH-H---CCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEE--EEC
Q ss_conf 55200105665103464324444211652344566664-0---37808999989898618873100256640144--302
Q gi|254780134|r 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-W---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNI 221 (348)
Q Consensus 148 ~~~~~i~~NP~~~v~~~~~~~~~~~~~t~~ei~~~~~~-~---~~~~~~~~~~~l~~~TG~R~~Ei~~L~~~did--~~~ 221 (348)
.+.+++..||+..+..++............+....... . ......++++.|+++||||.+|+++|+|+||| ++.
T Consensus 85 ~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~tG~R~~Ei~~L~~~did~~~~~ 164 (290)
T 1a0p_A 85 YREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGV 164 (290)
T ss_dssp HHTTSSSSCTTSCC----------CCCCHHHHHHHHHCSCTTSHHHHHHHHHHHHHHHHCCCHHHHTTCBGGGEETTTTE
T ss_pred HHHCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHCCHHHCCCCCCE
T ss_conf 98243346817650377766667651008999998752100134118999999999995877899980949995757998
Q ss_pred CCCCCCCCHHHHHHCCHHHHHHHHHH----------HCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC---CCCCH
Q ss_conf 33211331024331121689999964----------201332211222457758778999999999983889---98140
Q gi|254780134|r 222 FSIKTQKTGTIITVELPDGFMKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 (348)
Q Consensus 222 i~~~~~Kt~~~~~vpl~~~l~~~l~~----------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~agi~---~~~H~ 288 (348)
+. ...|+++.+.++..+.....+.. ........+....+.+.....+...++..+..+|+. .++|+
T Consensus 165 i~-~~~K~~k~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~H~ 243 (290)
T 1a0p_A 165 VR-VIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHV 243 (290)
T ss_dssp EE-EECSSSCEEEEECCHHHHHHHHHHHHHTHHHHHTTCCCCBSSBCTTSSBCCHHHHHHHHHHHHHHTTCCGGGCCHHH
T ss_pred EE-ECCCCCCEEEECCHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 98-66889940141132777778999998500111013445554533356654237899999999999457899987451
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 269999999984899889999964999899999999998
Q gi|254780134|r 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 (348)
Q Consensus 289 lRht~at~l~~~G~~~~~i~~~lGHss~~~t~~Y~~~~~ 327 (348)
|||||||.+.++|+++.+||.+|||+|+.||++|++..+
T Consensus 244 lRht~at~l~~~G~~~~~i~~~lGH~s~~tT~~Y~~~~~ 282 (290)
T 1a0p_A 244 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAT 282 (290)
T ss_dssp HHHHHHHHHHHHCSSCGGGSSCC--CCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHCCCH
T ss_conf 779999999987899999998818998899999987899