HHsearch results for GI: 254780134 and protein with PDBid: 1z1b_A
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=100.00 E-value=0 Score=315.49 Aligned_cols=316 Identities=18% Similarity=0.239 Sum_probs=245.6
Q ss_pred CCCCCCCCEEEECCCCCEEEEEE-ECCCCEEECCCCCCHHHHHHHH---HHHHCCCCCHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 88887981896228993899997-0895657558899988999999---9985343101231023234487899999999
Q gi|254780134|r 4 SLRLPPFVTKERTRHGKIIYYFR-KGHGRRIRLPYPHESTFIPAYM---SALTGSTPKREYINSPRKKPTTLKWLISEYR 79 (348)
Q Consensus 4 ~~~~p~~v~~~~~r~G~~~~~~r-~~~~~~~~~~~~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~Tl~~l~~~y~ 79 (348)
++.+||++++.. +| +|+|+ ...|+.+.++.........+.. .....................||.++++.|+
T Consensus 9 ~~~~P~~~y~r~--~g--~~~~r~~~~gk~~~lg~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~ 84 (356)
T 1z1b_A 9 RRDLPPNLYIRN--NG--YYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTARINSDNSVTLHSWLDRYE 84 (356)
T ss_dssp CCCCCTTEEEET--TT--EEEEECTTTCCEEEEESCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHSCBHHHHHHHHH
T ss_pred CCCCCCCEEEEC--CE--EEEEEECCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 889999889739--98--99999789997986899999999999999999986744035566532455752999999999
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 835543569788999999999999995699958969999999887515--997899999999999996445520010566
Q gi|254780134|r 80 KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINP 157 (348)
Q Consensus 80 ~~~~~~~l~~~T~~~~~~~~~~~~~~~g~~~l~~it~~~i~~~~~~~~--~~~~t~n~~~~~l~~~~~~a~~~~~i~~NP 157 (348)
.......++++|+.+|...+++|.+.||+.++.+|+..+|.+|++.+. .++.|+|++++.|+++|+||++.+++..||
T Consensus 85 ~~~~~~~~~~~T~~~y~~~~~~l~~~~g~~~l~~it~~~i~~~~~~~~~~~~~~t~~~~~~~l~~~~~~a~~~~~~~~np 164 (356)
T 1z1b_A 85 KILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNH 164 (356)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHHHHHSCSCBGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTSCSSCT
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99886599999999999999999999769996878999999999999984999999999999999999999851212481
Q ss_pred HHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC-CHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHC
Q ss_conf 51034643244442116523445666640378-08999989898618873100256640144302332113310243311
Q gi|254780134|r 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 (348)
Q Consensus 158 ~~~v~~~~~~~~~~~~~t~~ei~~~~~~~~~~-~~~~~~~~l~~~TG~R~~Ei~~L~~~did~~~i~~~~~Kt~~~~~vp 236 (348)
+..++.++.+... ..++.+|+..|++.+... ...++++.|+++||||.+|+++|+|+|||++.+.+..+|++....+|
T Consensus 165 ~~~~~~~~~~~~~-~~lt~~E~~~l~~~~~~~~~~~~~~~~l~~~tG~R~~Ei~~L~~~di~~~~~~i~~~K~~~~~~~p 243 (356)
T 1z1b_A 165 VAATRAAKSKVRR-SRLTADEYLKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIP 243 (356)
T ss_dssp TTTSCCCCCCCCB-CCCCHHHHHHHHHHTTSSCHHHHHHHHHHHHHCCCHHHHTTCBGGGEETTEEEEECTTTCCEEEEE
T ss_pred HHHHHCCCCCCCC-CCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHCCCHHHHCCCCEEEEECCCCCEEEEC
T ss_conf 5432012235778-768989987875201247657899999999968785457509299922464599988888424602
Q ss_pred CH-------HHHHHHHHHHC--CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-----CCCCHHHHHHHHHHHHCCC
Q ss_conf 21-------68999996420--1332211222457758778999999999983889-----9814026999999998489
Q gi|254780134|r 237 LP-------DGFMKLLAMTP--IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-----KSAHGVRKFSATISADAGA 302 (348)
Q Consensus 237 l~-------~~l~~~l~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~agi~-----~~~H~lRht~at~l~~~G~ 302 (348)
+. ..+.+.+.... ..+..+|++..|+|++.++++..|+++|+.+|++ .++|+|||+ ||.+.++|+
T Consensus 244 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~t~H~lRh~-a~~l~~~g~ 322 (356)
T 1z1b_A 244 TALHIDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELRSL-SARLYEKQI 322 (356)
T ss_dssp TTCEETTTTEEHHHHHHHHHHHTCSSBSSCCTTSCCCCHHHHHHHHHHHHHHHTCCCSSBCCCTTHHHHH-HHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH-HHHHHHCCC
T ss_conf 7187899999999999864401577650011346667778999999999998599988899975868999-999998699
Q ss_pred CHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 98899999649998999999999
Q gi|254780134|r 303 TAHELMATYGWKTVDQAETYTKG 325 (348)
Q Consensus 303 ~~~~i~~~lGHss~~~t~~Y~~~ 325 (348)
++.+|+++|||+|..||++|.+.
T Consensus 323 ~~~~i~~~lGH~~~~~t~~Y~~~ 345 (356)
T 1z1b_A 323 SDKFAQHLLGHKSDTMASQYRDD 345 (356)
T ss_dssp CHHHHHHHHTCSSHHHHHHHTCC
T ss_pred CHHHHHHHHCCCCHHHHHHHCCC
T ss_conf 99999988189998999988047