HHsearch results for GI: 254780134 and protein with PDBid: 2a3v_A
>2a3v_A Site-specific recombinase INTI4; protein-DNA complex, recombination; HET: DNA; 2.80A {Vibrio cholerae o1 biovar eltor str}
Probab=100.00 E-value=7.5e-33 Score=230.68 Aligned_cols=258 Identities=17% Similarity=0.173 Sum_probs=194.6
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999835543569788999999999999995699958969999999887515----997899999999999996445
Q gi|254780134|r 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK----HTPSSAIQFLTSMRVLFKWAV 148 (348)
Q Consensus 73 ~l~~~y~~~~~~~~l~~~T~~~~~~~~~~~~~~~g~~~l~~it~~~i~~~~~~~~----~~~~t~n~~~~~l~~~~~~a~ 148 (348)
.-+++|+.. ++++++|+.+|...+++|...+++.++.+|+..+|++|++.+. .++.+.+..++.++.++.++.
T Consensus 7 ~~~~~yl~~---r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~i~~~~i~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~ 83 (320)
T 2a3v_A 7 LSVREFMQT---RYYAKKTIEAYLHWITRYIHFHNKKHPSLMGDKEVEEFLTYLAVQGKVATKTQSLALNSLSFLYKEIL 83 (320)
T ss_dssp HHHHHHHHH---TTCCHHHHHHHHHHHHHHHTTSSSCCGGGCCHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHH---HCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 999999998---59689999999999999999972279323999999999999998489569999999999999998866
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEE--EECCCCCC
Q ss_conf 5200105665103464324444211652344566664037808999989898618873100256640144--30233211
Q gi|254780134|r 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKT 226 (348)
Q Consensus 149 ~~~~i~~NP~~~v~~~~~~~~~~~~~t~~ei~~~~~~~~~~~~~~~~~~l~~~TG~R~~Ei~~L~~~did--~~~i~~~~ 226 (348)
..+....+|+.. ++.......+++.+|+..+.... ....++++.++++||+|.+|+++|.|.|++ .+.+.+..
T Consensus 84 ~~~~~~~~~~~~---~k~~k~~~~~l~~~e~~~~~~~~--~~~~~~~~~ll~~tG~R~~E~~~l~~~d~~~~~~~i~~~~ 158 (320)
T 2a3v_A 84 KTPLSLEIRFQR---SQLERKLPVVLTRDEIRRLLEIV--DPKHQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQ 158 (320)
T ss_dssp SCCCCTTCCCCC---CCCCCCCCCCCCHHHHHHHTTSS--CHHHHHHHHHHHHSCCCHHHHHTCBGGGEETTTTEEEEEE
T ss_pred HHCCCCCCCCCC---CCCCCCCCCCCCHHHHHHHHHCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 403573356766---78788899767899999998556--8178999999998287378888878775103332303663
Q ss_pred CCCHHHHHHCCHHHHHHHHHHHC------------CC--CCCC---------------------C-----------CCCC
Q ss_conf 33102433112168999996420------------13--3221---------------------1-----------2224
Q gi|254780134|r 227 QKTGTIITVELPDGFMKLLAMTP------------IG--KETF---------------------F-----------INND 260 (348)
Q Consensus 227 ~Kt~~~~~vpl~~~l~~~l~~~~------------~~--~~~~---------------------~-----------~~~~ 260 (348)
.|+++.+.+|+.+.+...+.... .. ...+ + ....
T Consensus 159 ~k~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (320)
T 2a3v_A 159 GKGGKNRTVTLAKELYPHLKEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVMR 238 (320)
T ss_dssp ETTTEEEEEECCGGGHHHHHHHHHHHHHHHHHHTSCTTBCCSCCSTTCTTTSTTGGGCGGGSBSSBCSSCEEETTTTEEE
T ss_pred CCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHCCCCEECCCCCCCCCCCCCCCC
T ss_conf 67870138726599999999999985654322332113442120377766453530101331002455555554323323
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCC--CCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 57758778999999999983889--9814026999999998489988999996499989999999999899999999999
Q gi|254780134|r 261 KQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338 (348)
Q Consensus 261 g~~~~~~~~~~~~~~~~~~agi~--~~~H~lRht~at~l~~~G~~~~~i~~~lGHss~~~t~~Y~~~~~~~r~a~~a~~~ 338 (348)
+.++........+++.++.+|++ .++|+|||||||.|+++|+++.+||.+|||+|++||++|++..++. ..++++.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~gl~~~~s~H~lRHtfaT~ll~~g~~l~~vq~~lGHss~~tT~~Y~hl~~~~--~~~~~~~ 316 (320)
T 2a3v_A 239 RHHMNETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHVLDRG--ASGVLSP 316 (320)
T ss_dssp CCBCCHHHHHHHHHHHHHTTCCCSCCCHHHHHHHHHHHHHHTTCCHHHHHHHHTCSSHHHHGGGCC--------CCCCCH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHCCCHHH--HHHHHHH
T ss_conf 56465899999999999985999998887778999999998789999999883899889999998279978--9999717
Q ss_pred HH
Q ss_conf 98
Q gi|254780134|r 339 IS 340 (348)
Q Consensus 339 l~ 340 (348)
|+
T Consensus 317 l~ 318 (320)
T 2a3v_A 317 LS 318 (320)
T ss_dssp HH
T ss_pred HH
T ss_conf 62