HHsearch results for GI: 254780134 and protein with PDBid: 2khq_A

>2khq_A Integrase; all-alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus saprophyticus subsp}
Probab=99.54  E-value=6.9e-14  Score=107.37  Aligned_cols=98  Identities=14%  Similarity=0.167  Sum_probs=90.0

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHH
Q ss_conf             87899999999835543569788999999999999995699958969999999887515--9978999999999999964
Q gi|254780134|r   69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSSAIQFLTSMRVLFKW  146 (348)
Q Consensus        69 ~Tl~~l~~~y~~~~~~~~l~~~T~~~~~~~~~~~~~~~g~~~l~~it~~~i~~~~~~~~--~~~~t~n~~~~~l~~~~~~  146 (348)
                      +||.++++.|++.....+++++|+..|+..++++.+.||+.++.+||+.+|+++++.+.  .+++|++.+++.|+++|+|
T Consensus         2 iTf~~~~~~w~~~~~~~~~~~~T~~~y~~~~~~i~~~~g~~~l~~it~~~i~~~~~~l~~~~s~~t~~~~~~~l~~~~~~   81 (110)
T 2khq_A            2 ITFADYFYQWYEVNKLPHVSESTKRHYESAYKHIKDHFRHKLLKDIKRTEYQKFLNEYGLTHSYETIRKLNSYIRNAFDD   81 (110)
T ss_dssp             CBHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHCSSCBGGGCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             EEHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             82899999999997627789999999999999999996746040078999999999998641289999999999999999


Q ss_pred             HHHHHHHHHHHHHCCCCCCC
Q ss_conf             45520010566510346432
Q gi|254780134|r  147 AVRQEYVAINPCLSVERPKR  166 (348)
Q Consensus       147 a~~~~~i~~NP~~~v~~~~~  166 (348)
                      |+++|+|..|||.+|+.+..
T Consensus        82 Av~~~~i~~NP~~~vkl~~~  101 (110)
T 2khq_A           82 AIHEGYVIKNPTYKAELHAS  101 (110)
T ss_dssp             HHHTTCCCCCGGGGCCCCCG
T ss_pred             HHHCCCCCCCCCCCCEECCC
T ss_conf             99887910198768775721