HHsearch results for GI: 254780134 and protein with PDBid: 2khq_A
>2khq_A Integrase; all-alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus saprophyticus subsp}
Probab=99.54 E-value=6.9e-14 Score=107.37 Aligned_cols=98 Identities=14% Similarity=0.167 Sum_probs=90.0
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHH
Q ss_conf 87899999999835543569788999999999999995699958969999999887515--9978999999999999964
Q gi|254780134|r 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSSAIQFLTSMRVLFKW 146 (348)
Q Consensus 69 ~Tl~~l~~~y~~~~~~~~l~~~T~~~~~~~~~~~~~~~g~~~l~~it~~~i~~~~~~~~--~~~~t~n~~~~~l~~~~~~ 146 (348)
+||.++++.|++.....+++++|+..|+..++++.+.||+.++.+||+.+|+++++.+. .+++|++.+++.|+++|+|
T Consensus 2 iTf~~~~~~w~~~~~~~~~~~~T~~~y~~~~~~i~~~~g~~~l~~it~~~i~~~~~~l~~~~s~~t~~~~~~~l~~~~~~ 81 (110)
T 2khq_A 2 ITFADYFYQWYEVNKLPHVSESTKRHYESAYKHIKDHFRHKLLKDIKRTEYQKFLNEYGLTHSYETIRKLNSYIRNAFDD 81 (110)
T ss_dssp CBHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHCSSCBGGGCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred EEHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 82899999999997627789999999999999999996746040078999999999998641289999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCC
Q ss_conf 45520010566510346432
Q gi|254780134|r 147 AVRQEYVAINPCLSVERPKR 166 (348)
Q Consensus 147 a~~~~~i~~NP~~~v~~~~~ 166 (348)
|+++|+|..|||.+|+.+..
T Consensus 82 Av~~~~i~~NP~~~vkl~~~ 101 (110)
T 2khq_A 82 AIHEGYVIKNPTYKAELHAS 101 (110)
T ss_dssp HHHTTCCCCCGGGGCCCCCG
T ss_pred HHHCCCCCCCCCCCCEECCC
T ss_conf 99887910198768775721