HHsearch results for GI: 254780134 and protein with PDBid: 2kkv_A
>2kkv_A Integrase; protein structure, PSI, nesgc, structural genomics, protein structure initiative, northeast structural genomics consortium; NMR {Salmonella enterica subsp}
Probab=99.31 E-value=2.2e-12 Score=97.59 Aligned_cols=97 Identities=18% Similarity=0.340 Sum_probs=84.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HHHHHHCCCCHHHCCHHHHHHHHHHHCC--CHHHHHHHHHHHH
Q ss_conf 234487899999999835543569788999999999-9999956999589699999998875159--9789999999999
Q gi|254780134|r 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTSMR 141 (348)
Q Consensus 65 ~~~~~Tl~~l~~~y~~~~~~~~l~~~T~~~~~~~~~-~~~~~~g~~~l~~it~~~i~~~~~~~~~--~~~t~n~~~~~l~ 141 (348)
.....||++++++|++.. ...+++|...+...++ ++.|.||++++.+|++.+|..+++.+.. .+.++++.++.|+
T Consensus 3 ~~~~~TF~~va~~Wle~~--~~~~~~t~~~~~~~l~~~i~P~lG~~~i~~It~~di~~~l~~i~~~g~~~ta~r~~~~l~ 80 (121)
T 2kkv_A 3 NSGAYTFETIAREWHESN--KRWSEDHRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKEVDTSGKHDVAQRLQQRVT 80 (121)
T ss_dssp SCCCCSHHHHHHHHHTTC--CSSCHHHHHHHHHHHHHHHSSSSTTSCTTCCCSGGGHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 306338999999999987--977761899999999989999938865999739999999999999199799999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9996445520010566510346
Q gi|254780134|r 142 VLFKWAVRQEYVAINPCLSVER 163 (348)
Q Consensus 142 ~~~~~a~~~~~i~~NP~~~v~~ 163 (348)
.+|+||+..|+++.||+.+++.
T Consensus 81 ~if~~Av~~g~i~~NP~~~i~~ 102 (121)
T 2kkv_A 81 AIMRYAVQNDYIDSNPASDMAG 102 (121)
T ss_dssp HHHHHHHHTTSSCSCSCSSSSC
T ss_pred HHHHHHHHCCCCCCCCHHHHHH
T ss_conf 9999999868802285778987