HHsearch results for GI: 254780134 and protein with PDBid: 3nkh_A
>3nkh_A Integrase; alpha-fold, MRSA protein, structural genomics, PSI-2, protei structure initiative; 2.50A {Staphylococcus aureus subsp}
Probab=99.92 E-value=2.7e-24 Score=175.07 Aligned_cols=184 Identities=15% Similarity=0.225 Sum_probs=132.1
Q ss_pred HHCCCCCC--CCCCCCCCCCHHHHHHHHHHHCCCC-------------HHHHHHHHHHHCCCCCCCCCCCCCCEEE--EE
Q ss_conf 51034643--2444421165234456666403780-------------8999989898618873100256640144--30
Q gi|254780134|r 158 CLSVERPK--RKTEGIRPWTKEDMQQFKSFWSEGS-------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NN 220 (348)
Q Consensus 158 ~~~v~~~~--~~~~~~~~~t~~ei~~~~~~~~~~~-------------~~~~~~~l~~~TG~R~~Ei~~L~~~did--~~ 220 (348)
+.+|.... ...+....++.+|+..++....... ...+++.|+++||||+||+++|+|+||| ++
T Consensus 8 ~~~vd~~~~~~~~~~~~~l~~~Ei~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~TG~R~~El~~L~~~did~e~~ 87 (244)
T 3nkh_A 8 SSGVDLGTENLYFQSNAYLELNEIESIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQNEDIDFDNK 87 (244)
T ss_dssp -------------CCSCCCCHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHCCCHHHHHTCBGGGEETTTT
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCHHCCCCCC
T ss_conf 56761577521001589999999999999987632012321146679999999999998393689995191352166556
Q ss_pred CCCCC-----------------CCCCHH-HHHHCCHHHHHHHHHHHC-------------CCCCCCCCCCCCCCCCHHHH
Q ss_conf 23321-----------------133102-433112168999996420-------------13322112224577587789
Q gi|254780134|r 221 IFSIK-----------------TQKTGT-IITVELPDGFMKLLAMTP-------------IGKETFFINNDKQKMNATQF 269 (348)
Q Consensus 221 ~i~~~-----------------~~Kt~~-~~~vpl~~~l~~~l~~~~-------------~~~~~~~~~~~g~~~~~~~~ 269 (348)
.+.+. ..|+.. .+.|||++.+.++|.... .....+|.+..|.|++..++
T Consensus 88 ~i~v~~~~~~~~~~~~~~~~~~~~k~~~~~R~i~i~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~f~~~~g~~~s~~~~ 167 (244)
T 3nkh_A 88 SLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENKKDSKWNDGYLNRNFVFTNHKGNPMQTERF 167 (244)
T ss_dssp EEEECCEEEEEECTTSCEEEEECC---CCCEEEECCHHHHHHHHHHHHHHHHHHHHCTTCCCCSBSSBCTTSSBCCHHHH
T ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCHHH
T ss_conf 25783241010103677421345567785068832088878899999986543203556787654122037972320010
Q ss_pred HHHHHHHHHHCCCC--CCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999983889--981402699999999848998899999649998999-999999989999999999998540
Q gi|254780134|r 270 SIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVV 343 (348)
Q Consensus 270 ~~~~~~~~~~agi~--~~~H~lRht~at~l~~~G~~~~~i~~~lGHss~~~t-~~Y~~~~~~~r~a~~a~~~l~~~~ 343 (348)
...|+++++.+|++ .++|+|||||||.+.++|+++..|+.+|||+|.+|| ++|++..+. ...+.++.++.+.
T Consensus 168 ~~~~~~~~~~~gi~~~~~~H~lRht~at~l~~~g~~~~~i~~~lGH~s~~~t~~~Y~~~~~~--~~~~~~~ki~~l~ 242 (244)
T 3nkh_A 168 NKILREAAKDVGIDKEVSSHILRHSHISLLSQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQ--MDKDMMNKLEQVK 242 (244)
T ss_dssp HHHHHHHHHHTTCCSCCSHHHHHHHHHHHHHHTTCCHHHHHHHHCSTTHHHHHHHHHHHHHH--HHHTHHHHHHTCC
T ss_pred HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCCHH--HHHHHHHHHHHHH
T ss_conf 01577899981887546763348999999998699999999983899889999984467999--9999999988763