HHsearch results for GI: 254780134 and protein with PDBid: 3nrw_A

>3nrw_A Phage integrase/site-specific recombinase; alpha-helical domain, structural genomics, PSI-2, protein ST initiative; 1.70A {Haloarcula marismortui}
Probab=99.36  E-value=9.7e-12  Score=93.42  Aligned_cols=101  Identities=13%  Similarity=0.089  Sum_probs=87.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH---CCCCHHHCCHHHHHHHHHHH---CCCHHHHHHHHHH
Q ss_conf             34487899999999835543569788999999999999995---69995896999999988751---5997899999999
Q gi|254780134|r   66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTS  139 (348)
Q Consensus        66 ~~~~Tl~~l~~~y~~~~~~~~l~~~T~~~~~~~~~~~~~~~---g~~~l~~it~~~i~~~~~~~---~~~~~t~n~~~~~  139 (348)
                      ....|+.++++.|++... .+++++|...|+..++.|...+   |...+.+|++.+|.+|+..+   +.++.|++.+++.
T Consensus         4 ~~~~t~~e~ie~yl~~~~-~~ls~~T~~~Y~~~l~~f~~~l~~~~~~~l~~it~~~l~~y~~~l~~~g~s~~Ti~~~~~~   82 (117)
T 3nrw_A            4 RPSLSPREARDRYLAHRQ-TDAADASIKSFRYRLKHFVEWAEERDITAMRELTGWKLDEYETFRRGSDVSPATLNGEMQT   82 (117)
T ss_dssp             CCCCCHHHHHHHHHHHHT-TTSCHHHHHHHHHHHHHHHHHHHHTTCCSGGGCCHHHHHHHHHHHHTSSCCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf             999999999999999978-1868999999999999999999986337887688999999999987122268899699889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             9999964455200105665103464324
Q gi|254780134|r  140 MRVLFKWAVRQEYVAINPCLSVERPKRK  167 (348)
Q Consensus       140 l~~~~~~a~~~~~i~~NP~~~v~~~~~~  167 (348)
                      |++||+||++.|+|+.||+..|+.|+.-
T Consensus        83 lr~f~~~~~~~~~i~~np~~~V~~Pkv~  110 (117)
T 3nrw_A           83 LKNWLEYLARIDVVDEDLPEKVHVPTIL  110 (117)
T ss_dssp             HHHHHHHHHHTTSSCTTSGGGCCCC---
T ss_pred             HHHHHHHHHHCCCCCCCHHHHCCCCCCC
T ss_conf             9999999999899675999978799812