Query gi|254780134|ref|YP_003064547.1| phage-related integrase/recombinase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 348
No_of_seqs 161 out of 6694
Neff 9.6
Searched_HMMs 23785
Date Sun May 22 18:44:00 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780134.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1z1b_A Integrase; protein-DNA 100.0 0 0 315.5 25.7 316 4-325 9-345 (356)
2 1z19_A Integrase; protein-DNA 100.0 1.8E-40 7E-45 280.3 20.8 255 69-325 1-272 (283)
3 1a0p_A Site-specific recombina 100.0 2.4E-33 1E-37 233.9 16.3 253 74-327 5-282 (290)
4 2a3v_A Site-specific recombina 100.0 7.5E-33 3.2E-37 230.7 15.1 258 73-340 7-318 (320)
5 1xo0_A Recombinase CRE; CRE re 100.0 9.8E-27 4.1E-31 190.9 18.5 256 71-328 4-311 (324)
6 3nkh_A Integrase; alpha-fold, 99.9 2.7E-24 1.1E-28 175.1 14.0 184 158-343 8-242 (244)
7 1aih_A HP1 integrase; DNA inte 99.9 2.6E-24 1.1E-28 175.2 7.6 146 170-326 3-152 (170)
8 1ae9_A Lambda integrase; DNA r 99.8 7.3E-21 3.1E-25 152.7 9.9 152 172-324 2-168 (179)
9 2kob_A Uncharacterized protein 99.6 1.8E-15 7.8E-20 117.6 10.2 104 68-171 1-104 (108)
10 2oxo_A Integrase; DNA-binding 99.6 7.2E-15 3E-19 113.7 9.2 99 69-167 1-101 (103)
11 2kiw_A INT protein; alpha, str 99.6 4E-14 1.7E-18 108.9 11.0 98 70-168 1-100 (111)
12 2khq_A Integrase; all-alpha, s 99.5 6.9E-14 2.9E-18 107.4 11.3 98 69-166 2-101 (110)
13 3lys_A Prophage PI2 protein 01 99.5 1.4E-13 5.8E-18 105.4 10.2 97 68-164 5-103 (112)
14 2kd1_A DNA integration/recombi 99.5 4E-13 1.7E-17 102.4 9.7 104 67-171 4-111 (118)
15 2kkp_A Phage integrase; SAM-li 99.4 1.3E-13 5.3E-18 105.7 6.4 104 67-170 5-112 (117)
16 2kj9_A Integrase; DNA_BRE_C su 99.4 1.5E-12 6.1E-17 98.8 8.1 100 66-167 8-110 (118)
17 3nrw_A Phage integrase/site-sp 99.4 9.7E-12 4.1E-16 93.4 11.9 101 66-167 4-110 (117)
18 2kj8_A Putative prophage CPS-5 99.3 5.8E-12 2.4E-16 94.9 9.3 94 68-162 4-100 (118)
19 2kkv_A Integrase; protein stru 99.3 2.2E-12 9.3E-17 97.6 6.3 97 65-163 3-102 (121)
20 2kj5_A Phage integrase; GFT NM 99.3 3.8E-12 1.6E-16 96.1 6.5 103 65-169 3-108 (116)
21 2key_A Putative phage integras 99.2 2E-11 8.6E-16 91.3 7.5 95 68-163 7-105 (112)
22 2khv_A Phage integrase; soluti 99.2 7.7E-11 3.3E-15 87.5 7.4 91 69-159 1-94 (106)
23 2v6e_A Protelemorase; hairpin 97.3 0.00019 7.8E-09 46.0 4.2 133 191-323 281-446 (558)
24 3m4a_A Putative type I topoiso 96.1 0.014 6E-07 33.8 6.3 127 194-324 126-291 (346)
25 2h7g_X DNA topoisomerase 1; ty 91.5 0.33 1.4E-05 24.9 5.5 121 195-325 120-277 (314)
26 2b9s_A Topoisomerase I-like pr 81.3 2.1 9E-05 19.6 6.9 96 195-299 280-395 (432)
27 1flo_A FLP recombinase; tyrosi 77.1 2.9 0.00012 18.8 7.2 230 77-317 41-333 (422)
28 3jtz_A Integrase; four strande 34.7 16 0.00068 13.9 3.7 42 9-50 24-68 (88)
29 2bdd_A ACP-synthase; structura 34.0 17 0.0007 13.9 3.2 47 198-250 96-142 (182)
30 1hmj_A RPB5, protein (subunit 32.2 13 0.00054 14.6 1.1 45 171-216 12-61 (78)
31 2x48_A CAG38821; archeal virus 31.4 18 0.00077 13.6 4.7 35 287-323 18-52 (55)
32 2qg8_A Acyl carrier protein sy 27.7 21 0.00089 13.2 4.2 46 199-250 78-123 (163)
33 1jko_C HIN recombinase, DNA-in 25.0 24 0.00099 12.9 3.7 31 293-324 13-43 (52)
34 1dzf_A DNA-directed RNA polyme 24.5 9.4 0.00039 15.5 -0.7 45 171-216 153-202 (215)
35 2waq_H DNA-directed RNA polyme 23.2 11 0.00045 15.1 -0.6 45 171-216 20-69 (84)
36 3ju0_A Phage integrase; four s 22.6 26 0.0011 12.6 3.3 43 9-51 24-69 (108)
37 3h0g_E DNA-directed RNA polyme 22.2 11 0.00047 15.0 -0.7 47 170-216 147-197 (210)
38 1e0m_A Wwprototype; SH3 protot 21.5 28 0.0012 12.4 3.2 20 5-24 2-21 (37)
No 1
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=100.00 E-value=0 Score=315.49 Aligned_cols=316 Identities=18% Similarity=0.239 Sum_probs=245.6
Q ss_pred CCCCCCCCEEEECCCCCEEEEEE-ECCCCEEECCCCCCHHHHHHHH---HHHHCCCCCHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 88887981896228993899997-0895657558899988999999---9985343101231023234487899999999
Q gi|254780134|r 4 SLRLPPFVTKERTRHGKIIYYFR-KGHGRRIRLPYPHESTFIPAYM---SALTGSTPKREYINSPRKKPTTLKWLISEYR 79 (348)
Q Consensus 4 ~~~~p~~v~~~~~r~G~~~~~~r-~~~~~~~~~~~~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~Tl~~l~~~y~ 79 (348)
++.+||++++.. +| +|+|+ ...|+.+.++.........+.. .....................||.++++.|+
T Consensus 9 ~~~~P~~~y~r~--~g--~~~~r~~~~gk~~~lg~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~ 84 (356)
T 1z1b_A 9 RRDLPPNLYIRN--NG--YYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTARINSDNSVTLHSWLDRYE 84 (356)
T ss_dssp CCCCCTTEEEET--TT--EEEEECTTTCCEEEEESCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHSCBHHHHHHHHH
T ss_pred CCCCCCCEEEEC--CE--EEEEEECCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 889999889739--98--99999789997986899999999999999999986744035566532455752999999999
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 835543569788999999999999995699958969999999887515--997899999999999996445520010566
Q gi|254780134|r 80 KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINP 157 (348)
Q Consensus 80 ~~~~~~~l~~~T~~~~~~~~~~~~~~~g~~~l~~it~~~i~~~~~~~~--~~~~t~n~~~~~l~~~~~~a~~~~~i~~NP 157 (348)
.......++++|+.+|...+++|.+.||+.++.+|+..+|.+|++.+. .++.|+|++++.|+++|+||++.+++..||
T Consensus 85 ~~~~~~~~~~~T~~~y~~~~~~l~~~~g~~~l~~it~~~i~~~~~~~~~~~~~~t~~~~~~~l~~~~~~a~~~~~~~~np 164 (356)
T 1z1b_A 85 KILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNH 164 (356)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHHHHHSCSCBGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTSCSSCT
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99886599999999999999999999769996878999999999999984999999999999999999999851212481
Q ss_pred HHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC-CHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHC
Q ss_conf 51034643244442116523445666640378-08999989898618873100256640144302332113310243311
Q gi|254780134|r 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 (348)
Q Consensus 158 ~~~v~~~~~~~~~~~~~t~~ei~~~~~~~~~~-~~~~~~~~l~~~TG~R~~Ei~~L~~~did~~~i~~~~~Kt~~~~~vp 236 (348)
+..++.++.+... ..++.+|+..|++.+... ...++++.|+++||||.+|+++|+|+|||++.+.+..+|++....+|
T Consensus 165 ~~~~~~~~~~~~~-~~lt~~E~~~l~~~~~~~~~~~~~~~~l~~~tG~R~~Ei~~L~~~di~~~~~~i~~~K~~~~~~~p 243 (356)
T 1z1b_A 165 VAATRAAKSKVRR-SRLTADEYLKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIP 243 (356)
T ss_dssp TTTSCCCCCCCCB-CCCCHHHHHHHHHHTTSSCHHHHHHHHHHHHHCCCHHHHTTCBGGGEETTEEEEECTTTCCEEEEE
T ss_pred HHHHHCCCCCCCC-CCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHCCCHHHHCCCCEEEEECCCCCEEEEC
T ss_conf 5432012235778-768989987875201247657899999999968785457509299922464599988888424602
Q ss_pred CH-------HHHHHHHHHHC--CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-----CCCCHHHHHHHHHHHHCCC
Q ss_conf 21-------68999996420--1332211222457758778999999999983889-----9814026999999998489
Q gi|254780134|r 237 LP-------DGFMKLLAMTP--IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-----KSAHGVRKFSATISADAGA 302 (348)
Q Consensus 237 l~-------~~l~~~l~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~agi~-----~~~H~lRht~at~l~~~G~ 302 (348)
+. ..+.+.+.... ..+..+|++..|+|++.++++..|+++|+.+|++ .++|+|||+ ||.+.++|+
T Consensus 244 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~t~H~lRh~-a~~l~~~g~ 322 (356)
T 1z1b_A 244 TALHIDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELRSL-SARLYEKQI 322 (356)
T ss_dssp TTCEETTTTEEHHHHHHHHHHHTCSSBSSCCTTSCCCCHHHHHHHHHHHHHHHTCCCSSBCCCTTHHHHH-HHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH-HHHHHHCCC
T ss_conf 7187899999999999864401577650011346667778999999999998599988899975868999-999998699
Q ss_pred CHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 98899999649998999999999
Q gi|254780134|r 303 TAHELMATYGWKTVDQAETYTKG 325 (348)
Q Consensus 303 ~~~~i~~~lGHss~~~t~~Y~~~ 325 (348)
++.+|+++|||+|..||++|.+.
T Consensus 323 ~~~~i~~~lGH~~~~~t~~Y~~~ 345 (356)
T 1z1b_A 323 SDKFAQHLLGHKSDTMASQYRDD 345 (356)
T ss_dssp CHHHHHHHHTCSSHHHHHHHTCC
T ss_pred CHHHHHHHHCCCCHHHHHHHCCC
T ss_conf 99999988189998999988047
No 2
>1z19_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 2.80A {Enterobacteria phage lambda} PDB: 1p7d_A*
Probab=100.00 E-value=1.8e-40 Score=280.27 Aligned_cols=255 Identities=19% Similarity=0.235 Sum_probs=217.3
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHH
Q ss_conf 87899999999835543569788999999999999995699958969999999887515--9978999999999999964
Q gi|254780134|r 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSSAIQFLTSMRVLFKW 146 (348)
Q Consensus 69 ~Tl~~l~~~y~~~~~~~~l~~~T~~~~~~~~~~~~~~~g~~~l~~it~~~i~~~~~~~~--~~~~t~n~~~~~l~~~~~~ 146 (348)
+||.++++.|++....++++++|+.+|+..+++|.+.+|+.++.+|+..+|.+|++.+. .+++++|++++.|+++|+|
T Consensus 1 ~Tl~e~l~~y~~~~~~~~l~~~T~~~y~~~l~~~~~~~g~~~l~~it~~~i~~~~~~~~~~~~~~t~~~~~~~l~~~~~~ 80 (283)
T 1z19_A 1 MTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTLSDAFRE 80 (283)
T ss_dssp CBHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHSCSCBGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 92999999999999876999999999999999999997699968799999999999999858999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC-HHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCC
Q ss_conf 45520010566510346432444421165234456666403780-89999898986188731002566401443023321
Q gi|254780134|r 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225 (348)
Q Consensus 147 a~~~~~i~~NP~~~v~~~~~~~~~~~~~t~~ei~~~~~~~~~~~-~~~~~~~l~~~TG~R~~Ei~~L~~~did~~~i~~~ 225 (348)
|++.|+++.||+..++.++.+.. ...++.+|+.++++.+.... ..++++.|+++||||.+|+++|+|+||+++.+.+.
T Consensus 81 a~~~~~i~~np~~~~~~~~~~~~-~~~lt~~e~~~i~~~~~~~~~~~~~~~~l~~~tG~R~~Ei~~L~~~di~~~~~~i~ 159 (283)
T 1z19_A 81 AIAEGHITTNHVAATRAAKSKVR-RSRLTADEYLKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVE 159 (283)
T ss_dssp HHHTTSCSCCTTTTSCCCCCCCC-CCCCCHHHHHHHHHHGGGSCHHHHHHHHHHHHSCCCHHHHTTCBGGGEETTEEEEE
T ss_pred HHHCCCCCCCCHHHCCCCCCCCC-CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHCCCHHHHCCCEEEEE
T ss_conf 99859865481765005534777-77688999999999871488899999999999787865575192999218804998
Q ss_pred CCCCHHHHHHCCH-------HHHHHHHHHHC--CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-----CCCCHHHH
Q ss_conf 1331024331121-------68999996420--1332211222457758778999999999983889-----98140269
Q gi|254780134|r 226 TQKTGTIITVELP-------DGFMKLLAMTP--IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-----KSAHGVRK 291 (348)
Q Consensus 226 ~~Kt~~~~~vpl~-------~~l~~~l~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~agi~-----~~~H~lRh 291 (348)
..|++....+|+. ..+.+.+.... .....+|++..|.|++..+++..|+++++.+|++ .++|+|||
T Consensus 160 ~~K~~~~~~~p~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~lR~ 239 (283)
T 1z19_A 160 QSKTGVKIAIPTALHIDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELRS 239 (283)
T ss_dssp CTTTCCEEEEETTCEETTTTEEHHHHHHHHHHHHCSSBSSCCTTSSCCCHHHHHHHHHHHHHHTTCCCSSSCCCGGGHHH
T ss_pred ECCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
T ss_conf 66888424610738789999988888875303577740232013244671579999999999808876799997285999
Q ss_pred HHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 9999999848998899999649998999999999
Q gi|254780134|r 292 FSATISADAGATAHELMATYGWKTVDQAETYTKG 325 (348)
Q Consensus 292 t~at~l~~~G~~~~~i~~~lGHss~~~t~~Y~~~ 325 (348)
+++ .+.++|+++..|+++|||+|..||++|.+.
T Consensus 240 ~~~-~l~~~g~~~~~i~~~lGH~~~~~t~~Y~~~ 272 (283)
T 1z19_A 240 LSA-RLYEKQISDKFAQHLLGHKSDTMASQYRDD 272 (283)
T ss_dssp HHH-HHHHHHTCHHHHHHHHTCSSSCC-------
T ss_pred HHH-HHHHCCCCHHHHHHHHCCCCHHHHHHHHHC
T ss_conf 999-999869899999998389988999998425
No 3
>1a0p_A Site-specific recombinase XERD; DNA binding, DNA recombination; 2.50A {Escherichia coli} SCOP: a.60.9.1 d.163.1.1
Probab=100.00 E-value=2.4e-33 Score=233.93 Aligned_cols=253 Identities=17% Similarity=0.231 Sum_probs=189.3
Q ss_pred HHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHC--CCCHHHCCHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999983554-35697889999999999999956--99958969999999887515---99789999999999999644
Q gi|254780134|r 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMRVLFKWA 147 (348)
Q Consensus 74 l~~~y~~~~~~-~~l~~~T~~~~~~~~~~~~~~~g--~~~l~~it~~~i~~~~~~~~---~~~~t~n~~~~~l~~~~~~a 147 (348)
-+++|+..... ++++++|+..|+..+++|..+++ ..++.+|+..+|.+|+..+. .++.|++.+++.|+.+|+||
T Consensus 5 ~i~~fl~~l~~er~ls~~T~~~Y~~~l~~f~~~l~~~~~~~~~i~~~~i~~~~~~l~~~~~s~~t~~~~l~~l~~~~~~~ 84 (290)
T 1a0p_A 5 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKATSSARLLSAVRRLFQYL 84 (290)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHTSCCTTTCCHHHHHHHHHSCC-------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999869089999999999999999998859993769999999999999877998899999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHH-H---CCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEE--EEC
Q ss_conf 55200105665103464324444211652344566664-0---37808999989898618873100256640144--302
Q gi|254780134|r 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-W---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNI 221 (348)
Q Consensus 148 ~~~~~i~~NP~~~v~~~~~~~~~~~~~t~~ei~~~~~~-~---~~~~~~~~~~~l~~~TG~R~~Ei~~L~~~did--~~~ 221 (348)
.+.+++..||+..+..++............+....... . ......++++.|+++||||.+|+++|+|+||| ++.
T Consensus 85 ~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~tG~R~~Ei~~L~~~did~~~~~ 164 (290)
T 1a0p_A 85 YREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGV 164 (290)
T ss_dssp HHTTSSSSCTTSCC----------CCCCHHHHHHHHHCSCTTSHHHHHHHHHHHHHHHHCCCHHHHTTCBGGGEETTTTE
T ss_pred HHHCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHCCHHHCCCCCCE
T ss_conf 98243346817650377766667651008999998752100134118999999999995877899980949995757998
Q ss_pred CCCCCCCCHHHHHHCCHHHHHHHHHH----------HCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC---CCCCH
Q ss_conf 33211331024331121689999964----------201332211222457758778999999999983889---98140
Q gi|254780134|r 222 FSIKTQKTGTIITVELPDGFMKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 (348)
Q Consensus 222 i~~~~~Kt~~~~~vpl~~~l~~~l~~----------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~agi~---~~~H~ 288 (348)
+. ...|+++.+.++..+.....+.. ........+....+.+.....+...++..+..+|+. .++|+
T Consensus 165 i~-~~~K~~k~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~H~ 243 (290)
T 1a0p_A 165 VR-VIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHV 243 (290)
T ss_dssp EE-EECSSSCEEEEECCHHHHHHHHHHHHHTHHHHHTTCCCCBSSBCTTSSBCCHHHHHHHHHHHHHHTTCCGGGCCHHH
T ss_pred EE-ECCCCCCEEEECCHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 98-66889940141132777778999998500111013445554533356654237899999999999457899987451
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 269999999984899889999964999899999999998
Q gi|254780134|r 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 (348)
Q Consensus 289 lRht~at~l~~~G~~~~~i~~~lGHss~~~t~~Y~~~~~ 327 (348)
|||||||.+.++|+++.+||.+|||+|+.||++|++..+
T Consensus 244 lRht~at~l~~~G~~~~~i~~~lGH~s~~tT~~Y~~~~~ 282 (290)
T 1a0p_A 244 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAT 282 (290)
T ss_dssp HHHHHHHHHHHHCSSCGGGSSCC--CCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHCCCH
T ss_conf 779999999987899999998818998899999987899
No 4
>2a3v_A Site-specific recombinase INTI4; protein-DNA complex, recombination; HET: DNA; 2.80A {Vibrio cholerae o1 biovar eltor str}
Probab=100.00 E-value=7.5e-33 Score=230.68 Aligned_cols=258 Identities=17% Similarity=0.173 Sum_probs=194.6
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999835543569788999999999999995699958969999999887515----997899999999999996445
Q gi|254780134|r 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK----HTPSSAIQFLTSMRVLFKWAV 148 (348)
Q Consensus 73 ~l~~~y~~~~~~~~l~~~T~~~~~~~~~~~~~~~g~~~l~~it~~~i~~~~~~~~----~~~~t~n~~~~~l~~~~~~a~ 148 (348)
.-+++|+.. ++++++|+.+|...+++|...+++.++.+|+..+|++|++.+. .++.+.+..++.++.++.++.
T Consensus 7 ~~~~~yl~~---r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~i~~~~i~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~ 83 (320)
T 2a3v_A 7 LSVREFMQT---RYYAKKTIEAYLHWITRYIHFHNKKHPSLMGDKEVEEFLTYLAVQGKVATKTQSLALNSLSFLYKEIL 83 (320)
T ss_dssp HHHHHHHHH---TTCCHHHHHHHHHHHHHHHTTSSSCCGGGCCHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHH---HCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 999999998---59689999999999999999972279323999999999999998489569999999999999998866
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEE--EECCCCCC
Q ss_conf 5200105665103464324444211652344566664037808999989898618873100256640144--30233211
Q gi|254780134|r 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKT 226 (348)
Q Consensus 149 ~~~~i~~NP~~~v~~~~~~~~~~~~~t~~ei~~~~~~~~~~~~~~~~~~l~~~TG~R~~Ei~~L~~~did--~~~i~~~~ 226 (348)
..+....+|+.. ++.......+++.+|+..+.... ....++++.++++||+|.+|+++|.|.|++ .+.+.+..
T Consensus 84 ~~~~~~~~~~~~---~k~~k~~~~~l~~~e~~~~~~~~--~~~~~~~~~ll~~tG~R~~E~~~l~~~d~~~~~~~i~~~~ 158 (320)
T 2a3v_A 84 KTPLSLEIRFQR---SQLERKLPVVLTRDEIRRLLEIV--DPKHQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQ 158 (320)
T ss_dssp SCCCCTTCCCCC---CCCCCCCCCCCCHHHHHHHTTSS--CHHHHHHHHHHHHSCCCHHHHHTCBGGGEETTTTEEEEEE
T ss_pred HHCCCCCCCCCC---CCCCCCCCCCCCHHHHHHHHHCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 403573356766---78788899767899999998556--8178999999998287378888878775103332303663
Q ss_pred CCCHHHHHHCCHHHHHHHHHHHC------------CC--CCCC---------------------C-----------CCCC
Q ss_conf 33102433112168999996420------------13--3221---------------------1-----------2224
Q gi|254780134|r 227 QKTGTIITVELPDGFMKLLAMTP------------IG--KETF---------------------F-----------INND 260 (348)
Q Consensus 227 ~Kt~~~~~vpl~~~l~~~l~~~~------------~~--~~~~---------------------~-----------~~~~ 260 (348)
.|+++.+.+|+.+.+...+.... .. ...+ + ....
T Consensus 159 ~k~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (320)
T 2a3v_A 159 GKGGKNRTVTLAKELYPHLKEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVMR 238 (320)
T ss_dssp ETTTEEEEEECCGGGHHHHHHHHHHHHHHHHHHTSCTTBCCSCCSTTCTTTSTTGGGCGGGSBSSBCSSCEEETTTTEEE
T ss_pred CCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHCCCCEECCCCCCCCCCCCCCCC
T ss_conf 67870138726599999999999985654322332113442120377766453530101331002455555554323323
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCC--CCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 57758778999999999983889--9814026999999998489988999996499989999999999899999999999
Q gi|254780134|r 261 KQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338 (348)
Q Consensus 261 g~~~~~~~~~~~~~~~~~~agi~--~~~H~lRht~at~l~~~G~~~~~i~~~lGHss~~~t~~Y~~~~~~~r~a~~a~~~ 338 (348)
+.++........+++.++.+|++ .++|+|||||||.|+++|+++.+||.+|||+|++||++|++..++. ..++++.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~gl~~~~s~H~lRHtfaT~ll~~g~~l~~vq~~lGHss~~tT~~Y~hl~~~~--~~~~~~~ 316 (320)
T 2a3v_A 239 RHHMNETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHVLDRG--ASGVLSP 316 (320)
T ss_dssp CCBCCHHHHHHHHHHHHHTTCCCSCCCHHHHHHHHHHHHHHTTCCHHHHHHHHTCSSHHHHGGGCC--------CCCCCH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHCCCHHH--HHHHHHH
T ss_conf 56465899999999999985999998887778999999998789999999883899889999998279978--9999717
Q ss_pred HH
Q ss_conf 98
Q gi|254780134|r 339 IS 340 (348)
Q Consensus 339 l~ 340 (348)
|+
T Consensus 317 l~ 318 (320)
T 2a3v_A 317 LS 318 (320)
T ss_dssp HH
T ss_pred HH
T ss_conf 62
No 5
>1xo0_A Recombinase CRE; CRE recombinase, holliday junction, recombination,complex (recombinase/DNA), hydrolase, ligase/DNA complex; 2.00A {Enterobacteria phage P1} SCOP: a.60.9.1 d.163.1.1 PDB: 3crx_A* 1kbu_A 1ma7_A 1q3u_A* 1q3v_A* 3mgv_A* 1ouq_A* 1nzb_A* 2crx_A* 1xns_A 5crx_A* 1f44_A* 2hof_A 2hoi_A 4crx_A* 1drg_A 3c29_A* 3c28_A 1crx_A* 1pvr_A ...
Probab=99.95 E-value=9.8e-27 Score=190.93 Aligned_cols=256 Identities=15% Similarity=0.148 Sum_probs=176.9
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHC--CCCHHHCCHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHH
Q ss_conf 8999999998355435697889999999999999956--9995896999999988751---5997899999999999996
Q gi|254780134|r 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFK 145 (348)
Q Consensus 71 l~~l~~~y~~~~~~~~l~~~T~~~~~~~~~~~~~~~g--~~~l~~it~~~i~~~~~~~---~~~~~t~n~~~~~l~~~~~ 145 (348)
+.+-+.+|++.. +.++++|+..|...++.|..++. +.++.+|++.+|.+|++.+ +.+++|+|.+++.|+.+|+
T Consensus 4 ~~~~~~~~~~~~--~~~s~~T~~~y~~~~~~f~~f~~~~~~~~~~it~~~v~~y~~~l~~~g~s~~Ti~~~l~~l~~~~~ 81 (324)
T 1xo0_A 4 VRKNLMDMFRDR--QAFSEHTWKMLLSVCRSWAAWCKLNNRKWFPAEPEDVRDYLLYLQARGLAVKTIQQHLGQLNMLHR 81 (324)
T ss_dssp HHHHHHHHHHTG--GGSCHHHHHHHHHHHHHHHHHHHHHTCCCSSCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 999999999986--485999999999999999999997398956799999999999998779998999999999887789
Q ss_pred HHHHHHHHHHHHHHCCCCC--------CCCCCCCCCCCHHHHHHHHHHHCCC-----CHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 4455200105665103464--------3244442116523445666640378-----08999989898618873100256
Q gi|254780134|r 146 WAVRQEYVAINPCLSVERP--------KRKTEGIRPWTKEDMQQFKSFWSEG-----SQPRLAFEFLLYSGLRCSDSCRA 212 (348)
Q Consensus 146 ~a~~~~~i~~NP~~~v~~~--------~~~~~~~~~~t~~ei~~~~~~~~~~-----~~~~~~~~l~~~TG~R~~Ei~~L 212 (348)
||...+.+..+|....... ........+++.++...+....... .+.+.++.+++.+|+|.+|++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~r~~e~~~~ 161 (324)
T 1xo0_A 82 RSGLPRPSDSNAVSLVMRRIRKENVDAGERAKQALAFERTDFDQVRSLMENSDRCQDIRNLAFLGIAYNTLLKIAEIARI 161 (324)
T ss_dssp HHTSCCGGGSHHHHHHHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHCCCHHHHHHC
T ss_pred HHHHCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHC
T ss_conf 98742644463365530100001455332333577688999999998664534077899999999876555728988641
Q ss_pred CCCEEEEE-----CCCCCCCCC---HHHHHHCCHHHHHHHHHHHCC----------------CCCCCCCCCCCCCCCHHH
Q ss_conf 64014430-----233211331---024331121689999964201----------------332211222457758778
Q gi|254780134|r 213 GVQHLQNN-----IFSIKTQKT---GTIITVELPDGFMKLLAMTPI----------------GKETFFINNDKQKMNATQ 268 (348)
Q Consensus 213 ~~~did~~-----~i~~~~~Kt---~~~~~vpl~~~l~~~l~~~~~----------------~~~~~~~~~~g~~~~~~~ 268 (348)
.|.|++.. .+.....|+ +..+.+|+.+.+.+++..... ....++.+..+.++...+
T Consensus 162 ~~~d~~~~~~~~~~~~~~~~k~~~~~~~r~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (324)
T 1xo0_A 162 RVKDISRTDGGRMLIHIGRTKTLVSTAGVEKALSLGVTKLVERWISVSGVADDPNNYLFCRVRKNGVAAPSATSQLSTRA 241 (324)
T ss_dssp BGGGEEEEETTEEEEEECCCCSSSSCSCEEEEECHHHHHHHHHHHHHHCGGGSTTSBSSCEECTTSCEECCSSCCCCHHH
T ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCH
T ss_conf 12100015676300012344333236630220047799999999986022345432001014667665664456666402
Q ss_pred HHHHHHH---HHHH----CCC---CCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 9999999---9998----388---9981402699999999848998899999649998999999999989
Q gi|254780134|r 269 FSIWFKA---KATK----AGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 (348)
Q Consensus 269 ~~~~~~~---~~~~----agi---~~~~H~lRht~at~l~~~G~~~~~i~~~lGHss~~~t~~Y~~~~~~ 328 (348)
+...+.. .+.. +|+ ..++|+|||||||.|+++|+++.+||.+|||+|++||++|.+..+.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~H~lRHt~at~l~~~G~~~~~v~~~lGH~s~~tt~~Y~~~~~~ 311 (324)
T 1xo0_A 242 LEGIFEATHRLIYGAKDDSGQRYLAWSGHSARVGAARDMARAGVSIPEIMQAGGWTNVNIVMNYIRNLDS 311 (324)
T ss_dssp HHHHHHHHHHHHHCSCCCSCCSCSSCCTTHHHHHHHHHHHHTTCCHHHHHHHHTCSSSSSHHHHSTTSGG
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHCCCHH
T ss_conf 5567788889999998861788887788631999999999878999999988289988999998356468
No 6
>3nkh_A Integrase; alpha-fold, MRSA protein, structural genomics, PSI-2, protei structure initiative; 2.50A {Staphylococcus aureus subsp}
Probab=99.92 E-value=2.7e-24 Score=175.07 Aligned_cols=184 Identities=15% Similarity=0.225 Sum_probs=132.1
Q ss_pred HHCCCCCC--CCCCCCCCCCHHHHHHHHHHHCCCC-------------HHHHHHHHHHHCCCCCCCCCCCCCCEEE--EE
Q ss_conf 51034643--2444421165234456666403780-------------8999989898618873100256640144--30
Q gi|254780134|r 158 CLSVERPK--RKTEGIRPWTKEDMQQFKSFWSEGS-------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NN 220 (348)
Q Consensus 158 ~~~v~~~~--~~~~~~~~~t~~ei~~~~~~~~~~~-------------~~~~~~~l~~~TG~R~~Ei~~L~~~did--~~ 220 (348)
+.+|.... ...+....++.+|+..++....... ...+++.|+++||||+||+++|+|+||| ++
T Consensus 8 ~~~vd~~~~~~~~~~~~~l~~~Ei~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~TG~R~~El~~L~~~did~e~~ 87 (244)
T 3nkh_A 8 SSGVDLGTENLYFQSNAYLELNEIESIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQNEDIDFDNK 87 (244)
T ss_dssp -------------CCSCCCCHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHCCCHHHHHTCBGGGEETTTT
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCHHCCCCCC
T ss_conf 56761577521001589999999999999987632012321146679999999999998393689995191352166556
Q ss_pred CCCCC-----------------CCCCHH-HHHHCCHHHHHHHHHHHC-------------CCCCCCCCCCCCCCCCHHHH
Q ss_conf 23321-----------------133102-433112168999996420-------------13322112224577587789
Q gi|254780134|r 221 IFSIK-----------------TQKTGT-IITVELPDGFMKLLAMTP-------------IGKETFFINNDKQKMNATQF 269 (348)
Q Consensus 221 ~i~~~-----------------~~Kt~~-~~~vpl~~~l~~~l~~~~-------------~~~~~~~~~~~g~~~~~~~~ 269 (348)
.+.+. ..|+.. .+.|||++.+.++|.... .....+|.+..|.|++..++
T Consensus 88 ~i~v~~~~~~~~~~~~~~~~~~~~k~~~~~R~i~i~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~f~~~~g~~~s~~~~ 167 (244)
T 3nkh_A 88 SLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENKKDSKWNDGYLNRNFVFTNHKGNPMQTERF 167 (244)
T ss_dssp EEEECCEEEEEECTTSCEEEEECC---CCCEEEECCHHHHHHHHHHHHHHHHHHHHCTTCCCCSBSSBCTTSSBCCHHHH
T ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCHHH
T ss_conf 25783241010103677421345567785068832088878899999986543203556787654122037972320010
Q ss_pred HHHHHHHHHHCCCC--CCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999983889--981402699999999848998899999649998999-999999989999999999998540
Q gi|254780134|r 270 SIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVV 343 (348)
Q Consensus 270 ~~~~~~~~~~agi~--~~~H~lRht~at~l~~~G~~~~~i~~~lGHss~~~t-~~Y~~~~~~~r~a~~a~~~l~~~~ 343 (348)
...|+++++.+|++ .++|+|||||||.+.++|+++..|+.+|||+|.+|| ++|++..+. ...+.++.++.+.
T Consensus 168 ~~~~~~~~~~~gi~~~~~~H~lRht~at~l~~~g~~~~~i~~~lGH~s~~~t~~~Y~~~~~~--~~~~~~~ki~~l~ 242 (244)
T 3nkh_A 168 NKILREAAKDVGIDKEVSSHILRHSHISLLSQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQ--MDKDMMNKLEQVK 242 (244)
T ss_dssp HHHHHHHHHHTTCCSCCSHHHHHHHHHHHHHHTTCCHHHHHHHHCSTTHHHHHHHHHHHHHH--HHHTHHHHHHTCC
T ss_pred HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCCHH--HHHHHHHHHHHHH
T ss_conf 01577899981887546763348999999998699999999983899889999984467999--9999999988763
No 7
>1aih_A HP1 integrase; DNA integration, recombination; 2.50A {Haemophilus phage HP1} SCOP: d.163.1.1
Probab=99.90 E-value=2.6e-24 Score=175.17 Aligned_cols=146 Identities=15% Similarity=0.145 Sum_probs=114.0
Q ss_pred CCCCCCHHHHHHHHHHHCC--CCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHCCHHHHHHHHHH
Q ss_conf 4211652344566664037--80899998989861887310025664014430233211331024331121689999964
Q gi|254780134|r 170 GIRPWTKEDMQQFKSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247 (348)
Q Consensus 170 ~~~~~t~~ei~~~~~~~~~--~~~~~~~~~l~~~TG~R~~Ei~~L~~~did~~~i~~~~~Kt~~~~~vpl~~~l~~~l~~ 247 (348)
+...+++||+.+|++.+.. ....++++.|+++||||++|+++|+|+|||++.+.+...|+++.+.|||++.+.++|..
T Consensus 3 ~~~~Ls~eEi~~ll~~~~~~~~~~~~~~i~~~~~tG~R~~E~~~L~~~dI~~~~~~~~~~K~~~~r~vpl~~~~~~~l~~ 82 (170)
T 1aih_A 3 ELAFLYERDIYRLLAECDNSRNPDLGLIVRICLATGARWSEAETLTQSQVMPYKITFTNTKSKKNRTVPISDELFDMLPK 82 (170)
T ss_dssp CCCCCCHHHHHHHHHHHTTSSSTTHHHHHHHHHHHCCCHHHHHTCBTTTEETTEEEEESSSSSCEEEEECCHHHHHHSCC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCEEEEECCCCCEEEECCHHHHHHHHHH
T ss_conf 34689999999999986565897799999999997856999985864104665125663256620362647999999998
Q ss_pred HCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC--CCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 20133221122245775877899999999998388--9981402699999999848998899999649998999999999
Q gi|254780134|r 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 (348)
Q Consensus 248 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~agi--~~~~H~lRht~at~l~~~G~~~~~i~~~lGHss~~~t~~Y~~~ 325 (348)
.. ..+| +.....+...+.+ ...++ ..++|+|||||||.+.++|+++.+|+.+|||+|..||++|++.
T Consensus 83 ~~---~~~~------~~~~~~~~~~~~~--~~~~~~~~~~~H~lRht~at~l~~~g~~~~~i~~~lGH~s~~~t~~Y~~~ 151 (170)
T 1aih_A 83 KR---GRLF------NDAYESFENAVLR--AEIELPKGQLTHVLRHTFASHFMMNGGNILVLKEILGHSTIEMTMRYAHF 151 (170)
T ss_dssp CS---SBSS------CCCHHHHHHHHHH--TTCCCCTTCTTTHHHHHHHHHHHHTTCCHHHHHHHHTCSSHHHHGGGGGG
T ss_pred HC---CCCC------CCCHHHHHHHHHH--HHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHCC
T ss_conf 42---7766------6204678999988--86236876321301648999999869979999998389989999998877
Q ss_pred H
Q ss_conf 9
Q gi|254780134|r 326 A 326 (348)
Q Consensus 326 ~ 326 (348)
.
T Consensus 152 ~ 152 (170)
T 1aih_A 152 A 152 (170)
T ss_dssp S
T ss_pred C
T ss_conf 9
No 8
>1ae9_A Lambda integrase; DNA recombination, site-specific recombination; 1.90A {Enterobacteria phage lambda} SCOP: d.163.1.1
Probab=99.84 E-value=7.3e-21 Score=152.72 Aligned_cols=152 Identities=18% Similarity=0.271 Sum_probs=120.7
Q ss_pred CCCCHHHHHHHHHHHCCC-CHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHCCHHHHHHH------
Q ss_conf 116523445666640378-0899998989861887310025664014430233211331024331121689999------
Q gi|254780134|r 172 RPWTKEDMQQFKSFWSEG-SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL------ 244 (348)
Q Consensus 172 ~~~t~~ei~~~~~~~~~~-~~~~~~~~l~~~TG~R~~Ei~~L~~~did~~~i~~~~~Kt~~~~~vpl~~~l~~~------ 244 (348)
.++|.||+.+|+++++.. ...+++|.|+++||||.+|+++|+|+||+++...+...|++....+|+.+.....
T Consensus 2 ~~lt~eE~~~l~~~~~~~~~~~~~~~~l~~~TG~R~~E~~~L~~~di~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~ 81 (179)
T 1ae9_A 2 SRLTADEYLKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTALHIDALGISMKE 81 (179)
T ss_dssp CCCCHHHHHHHHHHGGGSCHHHHHHHHHHHHHCCCHHHHHHCBGGGEETTEEEEECTTTCCEEEEETTCEEGGGTEEHHH
T ss_pred CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHHH
T ss_conf 99999999999998756889999999999997575999983620103340147874255303455466889999999988
Q ss_pred -HHH--HCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-----CCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCH
Q ss_conf -964--201332211222457758778999999999983889-----981402699999999848998899999649998
Q gi|254780134|r 245 -LAM--TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-----KSAHGVRKFSATISADAGATAHELMATYGWKTV 316 (348)
Q Consensus 245 -l~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~agi~-----~~~H~lRht~at~l~~~G~~~~~i~~~lGHss~ 316 (348)
... .......++....+.+....+....+..+++.++.. .++|++||++++. +++|+++.+||++|||+|.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~g~~~~~i~~~~GH~s~ 160 (179)
T 1ae9_A 82 TLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELRSLSARL-YEKQISDKFAQHLLGHKSD 160 (179)
T ss_dssp HHHHHHHHTCCSBSSCCTTSCCCCHHHHHHHHHHHHHHHTCCCSSSCCCTTHHHHHHHHH-HHHHTCHHHHHHHHTC---
T ss_pred HHHHHCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-HHCCCCHHHHHHHHCCCCH
T ss_conf 775311357764111035777544420478999999998523565401487899999999-9959999999998389999
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q gi|254780134|r 317 DQAETYTK 324 (348)
Q Consensus 317 ~~t~~Y~~ 324 (348)
+||++|.+
T Consensus 161 ~~t~~Y~~ 168 (179)
T 1ae9_A 161 TMASQFRD 168 (179)
T ss_dssp -----CEE
T ss_pred HHHHHHHH
T ss_conf 99999985
No 9
>2kob_A Uncharacterized protein; alpha beta, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium leptum dsm 753}
Probab=99.63 E-value=1.8e-15 Score=117.60 Aligned_cols=104 Identities=16% Similarity=0.171 Sum_probs=96.2
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 48789999999983554356978899999999999999569995896999999988751599789999999999999644
Q gi|254780134|r 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA 147 (348)
Q Consensus 68 ~~Tl~~l~~~y~~~~~~~~l~~~T~~~~~~~~~~~~~~~g~~~l~~it~~~i~~~~~~~~~~~~t~n~~~~~l~~~~~~a 147 (348)
..||+++++.|++..+...++++|...|+..++.++..||+.++.+|++.+|+++++....++.++++++++|+++|+||
T Consensus 1 r~Tf~~~~~~wl~~~~~~~~~~~T~~~~~~~~~~~~~~lg~~~l~~It~~~i~~~l~~~~~s~~t~~~~~~~l~~~f~~A 80 (108)
T 2kob_A 1 RDSFGDWAEKFLKSKEADGVSVSQLNSYKNYCRNHLSPLYMKSLSEILPADIQSIINETKLAKNTLKAIRNTASQIFRLA 80 (108)
T ss_dssp CCBHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTSHHHHTSBGGGCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 93399999999997472898999999999999999999868819998788999999873326689999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 552001056651034643244442
Q gi|254780134|r 148 VRQEYVAINPCLSVERPKRKTEGI 171 (348)
Q Consensus 148 ~~~~~i~~NP~~~v~~~~~~~~~~ 171 (348)
++.++|+.|||..|+.|+..++..
T Consensus 81 v~~~~i~~NP~~~vk~Pk~~pe~~ 104 (108)
T 2kob_A 81 IENRAIDFNPADYVRIPKIALEHH 104 (108)
T ss_dssp HHTTSSSSCGGGTCCCCCCCCSSC
T ss_pred HHCCCCCCCHHHCCCCCCCCCCCC
T ss_conf 988880229162386899984235
No 10
>2oxo_A Integrase; DNA-binding protein, four-helix bundle, DNA binding protein; 2.00A {Unidentified phage}
Probab=99.58 E-value=7.2e-15 Score=113.75 Aligned_cols=99 Identities=20% Similarity=0.195 Sum_probs=91.8
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHH
Q ss_conf 87899999999835543569788999999999999995699958969999999887515--9978999999999999964
Q gi|254780134|r 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSSAIQFLTSMRVLFKW 146 (348)
Q Consensus 69 ~Tl~~l~~~y~~~~~~~~l~~~T~~~~~~~~~~~~~~~g~~~l~~it~~~i~~~~~~~~--~~~~t~n~~~~~l~~~~~~ 146 (348)
.||.++++.|+.....++++++|...|...++++.+.||+.++.+|++.||++|++.+. .++.|+++.++.|+.+|+|
T Consensus 1 iTl~~~~~~yl~~~~~~~~~~~T~~~y~~~l~~~~~~~g~~~l~~it~~~i~~~~~~~~~~~~~~t~~~~~~~l~~~f~~ 80 (103)
T 2oxo_A 1 MTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTLSDAFRE 80 (103)
T ss_dssp CBHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSCSCBGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 96999999999999887999999999999999999998689677764698999999999847715899999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCC
Q ss_conf 455200105665103464324
Q gi|254780134|r 147 AVRQEYVAINPCLSVERPKRK 167 (348)
Q Consensus 147 a~~~~~i~~NP~~~v~~~~~~ 167 (348)
|+..|+++.||+..|+.|+.+
T Consensus 81 Av~~g~i~~NP~~~vk~pk~k 101 (103)
T 2oxo_A 81 AIAEGHITTNHVAATRAAKSE 101 (103)
T ss_dssp HHHTTSCSSCTTC--------
T ss_pred HHHCCCCCCCCHHHCCCCCCC
T ss_conf 998889576954316667878
No 11
>2kiw_A INT protein; alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus haemolyticus JCSC1435}
Probab=99.55 E-value=4e-14 Score=108.93 Aligned_cols=98 Identities=18% Similarity=0.259 Sum_probs=89.4
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHH
Q ss_conf 78999999998355435697889999999999999956999589699999998875159--9789999999999999644
Q gi|254780134|r 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFKWA 147 (348)
Q Consensus 70 Tl~~l~~~y~~~~~~~~l~~~T~~~~~~~~~~~~~~~g~~~l~~it~~~i~~~~~~~~~--~~~t~n~~~~~l~~~~~~a 147 (348)
||+++++.|+.... ..++++|...|+..++++.+.+|+.++.+|++.+|+++++.+.. ++.++++.++.|+++|+||
T Consensus 1 Tf~~~~~~wl~~~~-~~~k~st~~~~~~~~~~~~~~lg~~~l~~It~~~i~~~~~~l~~~~s~~t~~~~~~~l~~~f~~A 79 (111)
T 2kiw_A 1 TFKQVADDWLKQYA-NDVKVSSVRAREKAIQHAIERFNTKPIQTIKKHDYQRFVDDISAQYSKNYVDSIVASTNMIFKYA 79 (111)
T ss_dssp CHHHHHHHHHHHHT-TSSCHHHHHHHHHHHHHHHHHTTSSCGGGCCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999987-50899999999999999999987883412100458999999997504999998999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCCCC
Q ss_conf 552001056651034643244
Q gi|254780134|r 148 VRQEYVAINPCLSVERPKRKT 168 (348)
Q Consensus 148 ~~~~~i~~NP~~~v~~~~~~~ 168 (348)
+++|+|+.||+.+|+.|+...
T Consensus 80 ~~~~~i~~NP~~~v~~pk~~~ 100 (111)
T 2kiw_A 80 YDTRLIKAMPSEGIKRPKKKV 100 (111)
T ss_dssp HHTTSCSCCTTTTCCCCSCCC
T ss_pred HHCCCCCCCHHHCCCCCCCCC
T ss_conf 987891209074085788877
No 12
>2khq_A Integrase; all-alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus saprophyticus subsp}
Probab=99.54 E-value=6.9e-14 Score=107.37 Aligned_cols=98 Identities=14% Similarity=0.167 Sum_probs=90.0
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHH
Q ss_conf 87899999999835543569788999999999999995699958969999999887515--9978999999999999964
Q gi|254780134|r 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSSAIQFLTSMRVLFKW 146 (348)
Q Consensus 69 ~Tl~~l~~~y~~~~~~~~l~~~T~~~~~~~~~~~~~~~g~~~l~~it~~~i~~~~~~~~--~~~~t~n~~~~~l~~~~~~ 146 (348)
+||.++++.|++.....+++++|+..|+..++++.+.||+.++.+||+.+|+++++.+. .+++|++.+++.|+++|+|
T Consensus 2 iTf~~~~~~w~~~~~~~~~~~~T~~~y~~~~~~i~~~~g~~~l~~it~~~i~~~~~~l~~~~s~~t~~~~~~~l~~~~~~ 81 (110)
T 2khq_A 2 ITFADYFYQWYEVNKLPHVSESTKRHYESAYKHIKDHFRHKLLKDIKRTEYQKFLNEYGLTHSYETIRKLNSYIRNAFDD 81 (110)
T ss_dssp CBHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHCSSCBGGGCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred EEHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 82899999999997627789999999999999999996746040078999999999998641289999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCC
Q ss_conf 45520010566510346432
Q gi|254780134|r 147 AVRQEYVAINPCLSVERPKR 166 (348)
Q Consensus 147 a~~~~~i~~NP~~~v~~~~~ 166 (348)
|+++|+|..|||.+|+.+..
T Consensus 82 Av~~~~i~~NP~~~vkl~~~ 101 (110)
T 2khq_A 82 AIHEGYVIKNPTYKAELHAS 101 (110)
T ss_dssp HHHTTCCCCCGGGGCCCCCG
T ss_pred HHHCCCCCCCCCCCCEECCC
T ss_conf 99887910198768775721
No 13
>3lys_A Prophage PI2 protein 01, integrase; helical N-terminal domain, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactococcus lactis}
Probab=99.50 E-value=1.4e-13 Score=105.44 Aligned_cols=97 Identities=8% Similarity=0.064 Sum_probs=88.8
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHH
Q ss_conf 487899999999835543569788999999999999995699958969999999887515--997899999999999996
Q gi|254780134|r 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSSAIQFLTSMRVLFK 145 (348)
Q Consensus 68 ~~Tl~~l~~~y~~~~~~~~l~~~T~~~~~~~~~~~~~~~g~~~l~~it~~~i~~~~~~~~--~~~~t~n~~~~~l~~~~~ 145 (348)
..||.++++.|+.......++++|...|+..++++.+.||+.++.+|++.+|++|++.+. .+++|++.+++.|+++|+
T Consensus 5 k~tl~d~~~~Wl~~~k~~~~~~~T~~~y~~~~~~i~~~~g~~~l~~It~~~i~~~~~~l~~~~s~~tv~~~~~~l~~~~~ 84 (112)
T 3lys_A 5 KQEISEYFKDWMELYKKNAIDEMTYKGYEQTLKYLKTYMPNVLISEITASSYQRALNKFAETHAKASTKGFHTRVRASIQ 84 (112)
T ss_dssp CSBHHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHSSSCBTTTCCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 07799999999999722889999999999999999999880802007999999999973246426899999999999999
Q ss_pred HHHHHHHHHHHHHHCCCCC
Q ss_conf 4455200105665103464
Q gi|254780134|r 146 WAVRQEYVAINPCLSVERP 164 (348)
Q Consensus 146 ~a~~~~~i~~NP~~~v~~~ 164 (348)
||+.+|+|..||+.+|+..
T Consensus 85 ~Av~~g~I~~NP~~~v~i~ 103 (112)
T 3lys_A 85 CLIEEGRLQKDFTTRAVVK 103 (112)
T ss_dssp HHHHTTSCSSCTTSSTTCC
T ss_pred HHHHCCCCCCCCCCCCEEC
T ss_conf 9998869030888888767
No 14
>2kd1_A DNA integration/recombination/invertion protein; protein structure initiative, structural genomics, unknown function, PSI-2; HET: DNA; NMR {Bacillus cereus atcc 14579}
Probab=99.45 E-value=4e-13 Score=102.44 Aligned_cols=104 Identities=16% Similarity=0.279 Sum_probs=91.1
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HHHHHHCCCCHHHCCHHHHHHHHHHH---CCCHHHHHHHHHHHHH
Q ss_conf 4487899999999835543569788999999999-99999569995896999999988751---5997899999999999
Q gi|254780134|r 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRV 142 (348)
Q Consensus 67 ~~~Tl~~l~~~y~~~~~~~~l~~~T~~~~~~~~~-~~~~~~g~~~l~~it~~~i~~~~~~~---~~~~~t~n~~~~~l~~ 142 (348)
...||+++++.|+.... ..++++|...|+..++ ++.+.+|+.++.+|++.+++.+++.+ ..++.|+|..++.|++
T Consensus 4 s~~Tf~~~~~~w~~~~~-~~~~~~T~~~y~~~~~~~i~~~~g~~~l~~i~~~~i~~~~~~~~~~~~s~~t~~~~~~~l~~ 82 (118)
T 2kd1_A 4 SKLSYGEYLESWFNTKR-HSVGIQTAKVLKGYLNSRIIPSLGNIKLAKLTSLHMQNYVNSLRDEGLKRGTIEKIIKVIRN 82 (118)
T ss_dssp SCSBHHHHHHHHHHHHH-HHHCHHHHHHHHHHHTTTHHHHTTSSBGGGCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 41589999999999983-72899999999999999999986887699989999999987400011589999999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 99644552001056651034643244442
Q gi|254780134|r 143 LFKWAVRQEYVAINPCLSVERPKRKTEGI 171 (348)
Q Consensus 143 ~~~~a~~~~~i~~NP~~~v~~~~~~~~~~ 171 (348)
+|+||++.|+|..||+.+|+.|+...++.
T Consensus 83 ~~~~Av~~~~i~~NP~~~ik~pk~~kkei 111 (118)
T 2kd1_A 83 SLEHAIDLELITKNVAAKTKLPKADKEEL 111 (118)
T ss_dssp HHHHHHHTTSCSSCTTTTCCCCSCCCCSS
T ss_pred HHHHHHHCCCCCCCCHHCCCCCCCCCCCC
T ss_conf 99999988693539363093899998630
No 15
>2kkp_A Phage integrase; SAM-like domain, alpha-helical bundle, structural genomics, PSI-2, protein structure initiative; NMR {Moorella thermoacetica atcc 39073}
Probab=99.44 E-value=1.3e-13 Score=105.68 Aligned_cols=104 Identities=14% Similarity=0.182 Sum_probs=92.0
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-HHHHHCCCCHHHCCHHHHHHHHHHH---CCCHHHHHHHHHHHHH
Q ss_conf 44878999999998355435697889999999999-9999569995896999999988751---5997899999999999
Q gi|254780134|r 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRV 142 (348)
Q Consensus 67 ~~~Tl~~l~~~y~~~~~~~~l~~~T~~~~~~~~~~-~~~~~g~~~l~~it~~~i~~~~~~~---~~~~~t~n~~~~~l~~ 142 (348)
...||+++++.|+......+++++|+..|+..++. +.+.+|+.++.+|+..+++++++.+ +.+++++++.++.|++
T Consensus 5 ~~iTl~~~~~~w~~~~~~~~~~~~T~~~y~~~~~~~i~~~~g~~~l~~It~~~i~~~~~~l~~~~~s~~t~~~~~~~l~~ 84 (117)
T 2kkp_A 5 SKITVEQWLNRWLTDYAKPHLRQSTWESYETVLRLHVIPTLGSIPLKKLQPADIQRLYASKLESGLSPTRVRYIHVVLHE 84 (117)
T ss_dssp CCSCHHHHHHHHHHHHTSCCCSCCCCSHHHHHHHHHHCCCCCTSCTTTCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 84889999999999988778999999999999999999997888099977799998888776257417789789999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 9964455200105665103464324444
Q gi|254780134|r 143 LFKWAVRQEYVAINPCLSVERPKRKTEG 170 (348)
Q Consensus 143 ~~~~a~~~~~i~~NP~~~v~~~~~~~~~ 170 (348)
+|+||+++|+|..||+..|+.|+.+.+.
T Consensus 85 ~~~~Av~~~~i~~NP~~~vk~Pk~P~~~ 112 (117)
T 2kkp_A 85 AMSQARESGLLLQNPTEAAKPPRHPLEH 112 (117)
T ss_dssp HHHHHHTTTSCSSCGGGGSCCCCCCCCC
T ss_pred HHHHHHHCCCCCCCCHHHCCCCCCCCCC
T ss_conf 9999999869052907319789998655
No 16
>2kj9_A Integrase; DNA_BRE_C superfamily, INTB, PSI-2, structural genomics, protein structure initiative; NMR {Pectobacterium atrosepticum}
Probab=99.37 E-value=1.5e-12 Score=98.77 Aligned_cols=100 Identities=13% Similarity=0.220 Sum_probs=86.7
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HHHHHHCCCCHHHCCHHHHHHHHHHHCC--CHHHHHHHHHHHHH
Q ss_conf 34487899999999835543569788999999999-9999956999589699999998875159--97899999999999
Q gi|254780134|r 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTSMRV 142 (348)
Q Consensus 66 ~~~~Tl~~l~~~y~~~~~~~~l~~~T~~~~~~~~~-~~~~~~g~~~l~~it~~~i~~~~~~~~~--~~~t~n~~~~~l~~ 142 (348)
....||++++++|+... ...+++|...+...++ ++.|.||+.||.+|++.+|..+++.+.. ++.++++.++.|+.
T Consensus 8 ~~~~TF~~va~~W~e~k--~~~~~~t~~~~~~~l~~~i~P~~G~~~i~~It~~~i~~~l~~i~~~g~~~ta~r~~~~l~~ 85 (118)
T 2kj9_A 8 NNTRAFKTVAKSWFATK--TTWSEDYQRSVWTRLETYLFPDIGNKDIAELDTGDLLVPIKKIEKLGYLEIAMRVKQYATA 85 (118)
T ss_dssp SSCSBHHHHHHHHHHTC--CSSCHHHHHHHHHHHHHTSSTTGGGSBGGGCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 73467999999999886--8888879999999999788898588569995559999999999993588999999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 9964455200105665103464324
Q gi|254780134|r 143 LFKWAVRQEYVAINPCLSVERPKRK 167 (348)
Q Consensus 143 ~~~~a~~~~~i~~NP~~~v~~~~~~ 167 (348)
+|+||+..|+++.||+.+++....+
T Consensus 86 if~~Av~~g~i~~NP~~~i~~~l~k 110 (118)
T 2kj9_A 86 IMRYAVQQKMIRFNPAYDLEGAVQK 110 (118)
T ss_dssp HHHHHHHTTSSSSCHHHHCCSCSSS
T ss_pred HHHHHHHCCCCCCCCHHHHHHHCCC
T ss_conf 9999998788333858889874799
No 17
>3nrw_A Phage integrase/site-specific recombinase; alpha-helical domain, structural genomics, PSI-2, protein ST initiative; 1.70A {Haloarcula marismortui}
Probab=99.36 E-value=9.7e-12 Score=93.42 Aligned_cols=101 Identities=13% Similarity=0.089 Sum_probs=87.9
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH---CCCCHHHCCHHHHHHHHHHH---CCCHHHHHHHHHH
Q ss_conf 34487899999999835543569788999999999999995---69995896999999988751---5997899999999
Q gi|254780134|r 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTS 139 (348)
Q Consensus 66 ~~~~Tl~~l~~~y~~~~~~~~l~~~T~~~~~~~~~~~~~~~---g~~~l~~it~~~i~~~~~~~---~~~~~t~n~~~~~ 139 (348)
....|+.++++.|++... .+++++|...|+..++.|...+ |...+.+|++.+|.+|+..+ +.++.|++.+++.
T Consensus 4 ~~~~t~~e~ie~yl~~~~-~~ls~~T~~~Y~~~l~~f~~~l~~~~~~~l~~it~~~l~~y~~~l~~~g~s~~Ti~~~~~~ 82 (117)
T 3nrw_A 4 RPSLSPREARDRYLAHRQ-TDAADASIKSFRYRLKHFVEWAEERDITAMRELTGWKLDEYETFRRGSDVSPATLNGEMQT 82 (117)
T ss_dssp CCCCCHHHHHHHHHHHHT-TTSCHHHHHHHHHHHHHHHHHHHHTTCCSGGGCCHHHHHHHHHHHHTSSCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 999999999999999978-1868999999999999999999986337887688999999999987122268899699889
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 9999964455200105665103464324
Q gi|254780134|r 140 MRVLFKWAVRQEYVAINPCLSVERPKRK 167 (348)
Q Consensus 140 l~~~~~~a~~~~~i~~NP~~~v~~~~~~ 167 (348)
|++||+||++.|+|+.||+..|+.|+.-
T Consensus 83 lr~f~~~~~~~~~i~~np~~~V~~Pkv~ 110 (117)
T 3nrw_A 83 LKNWLEYLARIDVVDEDLPEKVHVPTIL 110 (117)
T ss_dssp HHHHHHHHHHTTSSCTTSGGGCCCC---
T ss_pred HHHHHHHHHHCCCCCCCHHHHCCCCCCC
T ss_conf 9999999999899675999978799812
No 18
>2kj8_A Putative prophage CPS-53 integrase; INTS, INTC, YFDB, DNA integration, DNA recombination, structural genomics, protein structure initiative; NMR {Escherichia coli k-12}
Probab=99.33 E-value=5.8e-12 Score=94.87 Aligned_cols=94 Identities=13% Similarity=0.209 Sum_probs=84.0
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HHHHHHCCCCHHHCCHHHHHHHHHHHCC--CHHHHHHHHHHHHHHH
Q ss_conf 487899999999835543569788999999999-9999956999589699999998875159--9789999999999999
Q gi|254780134|r 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTSMRVLF 144 (348)
Q Consensus 68 ~~Tl~~l~~~y~~~~~~~~l~~~T~~~~~~~~~-~~~~~~g~~~l~~it~~~i~~~~~~~~~--~~~t~n~~~~~l~~~~ 144 (348)
..||++++++|++..+ ..++++|...+...++ ++.|.||++++.+|++.+|..+++.+.. ++.++++.++.++.+|
T Consensus 4 ~nTF~~~a~eWle~~k-~~~~~~t~~~~~~~l~~~i~P~lG~~~i~~It~~~i~~~l~~i~~~g~~~ta~r~~~~l~~if 82 (118)
T 2kj8_A 4 NNSFSAIYKEWYEHKK-QVWSVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVF 82 (118)
T ss_dssp TTBHHHHHHHHHHHHT-TTSCHHHHHHHHHHHHHHHHHHHTTSBTTSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 5679999999999852-438887999999999988788848982999379999999999999599799999999999999
Q ss_pred HHHHHHHHHHHHHHHCCC
Q ss_conf 644552001056651034
Q gi|254780134|r 145 KWAVRQEYVAINPCLSVE 162 (348)
Q Consensus 145 ~~a~~~~~i~~NP~~~v~ 162 (348)
+||+..|+++.||+.+++
T Consensus 83 ~~Av~~~~i~~NP~~~i~ 100 (118)
T 2kj8_A 83 RYAIVTGRAKYNPAPDLA 100 (118)
T ss_dssp HHHHHTTSCSCCSHHHHH
T ss_pred HHHHHCCCCCCCCHHHHH
T ss_conf 999985880238278898
No 19
>2kkv_A Integrase; protein structure, PSI, nesgc, structural genomics, protein structure initiative, northeast structural genomics consortium; NMR {Salmonella enterica subsp}
Probab=99.31 E-value=2.2e-12 Score=97.59 Aligned_cols=97 Identities=18% Similarity=0.340 Sum_probs=84.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HHHHHHCCCCHHHCCHHHHHHHHHHHCC--CHHHHHHHHHHHH
Q ss_conf 234487899999999835543569788999999999-9999956999589699999998875159--9789999999999
Q gi|254780134|r 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTSMR 141 (348)
Q Consensus 65 ~~~~~Tl~~l~~~y~~~~~~~~l~~~T~~~~~~~~~-~~~~~~g~~~l~~it~~~i~~~~~~~~~--~~~t~n~~~~~l~ 141 (348)
.....||++++++|++.. ...+++|...+...++ ++.|.||++++.+|++.+|..+++.+.. .+.++++.++.|+
T Consensus 3 ~~~~~TF~~va~~Wle~~--~~~~~~t~~~~~~~l~~~i~P~lG~~~i~~It~~di~~~l~~i~~~g~~~ta~r~~~~l~ 80 (121)
T 2kkv_A 3 NSGAYTFETIAREWHESN--KRWSEDHRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKEVDTSGKHDVAQRLQQRVT 80 (121)
T ss_dssp SCCCCSHHHHHHHHHTTC--CSSCHHHHHHHHHHHHHHHSSSSTTSCTTCCCSGGGHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 306338999999999987--977761899999999989999938865999739999999999999199799999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9996445520010566510346
Q gi|254780134|r 142 VLFKWAVRQEYVAINPCLSVER 163 (348)
Q Consensus 142 ~~~~~a~~~~~i~~NP~~~v~~ 163 (348)
.+|+||+..|+++.||+.+++.
T Consensus 81 ~if~~Av~~g~i~~NP~~~i~~ 102 (121)
T 2kkv_A 81 AIMRYAVQNDYIDSNPASDMAG 102 (121)
T ss_dssp HHHHHHHHTTSSCSCSCSSSSC
T ss_pred HHHHHHHHCCCCCCCCHHHHHH
T ss_conf 9999999868802285778987
No 20
>2kj5_A Phage integrase; GFT NMR, PSI-2, NESG, structural genomics, protein structure initiative; NMR {Nitrosospira multiformis atcc 25196}
Probab=99.29 E-value=3.8e-12 Score=96.07 Aligned_cols=103 Identities=18% Similarity=0.264 Sum_probs=83.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-HHHHHHHCCCCHHHCCHHHHHHHHHHHC--CCHHHHHHHHHHHH
Q ss_conf 23448789999999983554356978899999999-9999995699958969999999887515--99789999999999
Q gi|254780134|r 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSSAIQFLTSMR 141 (348)
Q Consensus 65 ~~~~~Tl~~l~~~y~~~~~~~~l~~~T~~~~~~~~-~~~~~~~g~~~l~~it~~~i~~~~~~~~--~~~~t~n~~~~~l~ 141 (348)
.....||+++++.|+...... ...+...+++.+ +++.+.||+.++.+|++.++.++++.+. .++.+++++++.|+
T Consensus 3 ek~~~T~~~l~~~w~e~~~~~--~~~~~~~~~~~~~~~i~p~~G~~~i~~It~~~i~~~~~~i~~~~~~~ta~~~~~~l~ 80 (116)
T 2kj5_A 3 EKNAYTVAQLADEYFERMIAG--RWKHPNIVRSRIEKDIKPAIGSLKVEDVKPRHIDDVLKAVMKRGAPSIANDTLRWLK 80 (116)
T ss_dssp SSSCCBHHHHHHHHHHHHTTT--SCSCHHHHHHHHHHTTSCSGGGSBSSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 655433999999999986047--888199999999978489878780887089999999999998366577999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 9996445520010566510346432444
Q gi|254780134|r 142 VLFKWAVRQEYVAINPCLSVERPKRKTE 169 (348)
Q Consensus 142 ~~~~~a~~~~~i~~NP~~~v~~~~~~~~ 169 (348)
.+|+||++.++|+.||+.+|+.+..+.+
T Consensus 81 ~i~~~A~~~~~i~~NP~~~i~~~~~g~k 108 (116)
T 2kj5_A 81 RMFNYAIKRHIIEYNPAAAFDPGDAGGK 108 (116)
T ss_dssp HHHHHHHHTTSCSSCGGGGSCCCCCCCC
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 9999999877956697244972458963
No 21
>2key_A Putative phage integrase; protein structure, PSI, NESG, structural genomics, unknown function, protein structure initiative; NMR {Bacteroides fragilis nctc 9343}
Probab=99.23 E-value=2e-11 Score=91.30 Aligned_cols=95 Identities=13% Similarity=0.219 Sum_probs=85.5
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHH
Q ss_conf 48789999999983554356978899999999999999569995896999999988751----59978999999999999
Q gi|254780134|r 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----KHTPSSAIQFLTSMRVL 143 (348)
Q Consensus 68 ~~Tl~~l~~~y~~~~~~~~l~~~T~~~~~~~~~~~~~~~g~~~l~~it~~~i~~~~~~~----~~~~~t~n~~~~~l~~~ 143 (348)
..||.++++.|+...+ +.++++|...|+..++.|...+|+.++.+|+..+|++|.+.+ +.+++|++.+++.|+++
T Consensus 7 ~~tf~~~~~~~l~~~~-~~~s~~T~~~Y~~~l~~~~~~~~~~~~~~it~~~i~~f~~~l~~~~~~s~~Ti~~~l~~lr~~ 85 (112)
T 2key_A 7 FKSFHDFVASYMKTYS-RRLEIGTFRHHKSCMRKFKEYCEGLQFHELTEDFLRDYLIYMKKTLCNADSTAQRNLSTIKIY 85 (112)
T ss_dssp CCSHHHHHHHHTHHHH-TTSCHHHHHHHHHHHHHTTTSCSCCCTTTCCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 7899999999999986-479999999999999999998455998986999899999999873277703669999999999
Q ss_pred HHHHHHHHHHHHHHHHCCCC
Q ss_conf 96445520010566510346
Q gi|254780134|r 144 FKWAVRQEYVAINPCLSVER 163 (348)
Q Consensus 144 ~~~a~~~~~i~~NP~~~v~~ 163 (348)
|+||+++|+|..||+..++.
T Consensus 86 ~~~A~~~g~i~~nPf~~~~l 105 (112)
T 2key_A 86 VSAAIKKGYMENDPFKDFGL 105 (112)
T ss_dssp HHHHHHTTSCCSCHHHHHTC
T ss_pred HHHHHHCCCCCCCCCCCEEE
T ss_conf 99999887943188212464
No 22
>2khv_A Phage integrase; solution structure, GFT, NESG, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Nitrosospira multiformis atcc 25196}
Probab=99.15 E-value=7.7e-11 Score=87.54 Aligned_cols=91 Identities=15% Similarity=0.180 Sum_probs=78.0
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HHHHHHCCCCHHHCCHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHH
Q ss_conf 87899999999835543569788999999999-99999569995896999999988751-59978999999999999964
Q gi|254780134|r 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQFLTSMRVLFKW 146 (348)
Q Consensus 69 ~Tl~~l~~~y~~~~~~~~l~~~T~~~~~~~~~-~~~~~~g~~~l~~it~~~i~~~~~~~-~~~~~t~n~~~~~l~~~~~~ 146 (348)
.||++++++|+....-.-.++++...+++.++ ++.|.||++||++|++.+|.++++.+ ..++.++++.++.++.+|+|
T Consensus 1 iTF~evA~~w~~~~~~~w~~~~~~~~~~~~l~~~i~P~iG~~~I~~I~~~~i~~~l~~~~~~~~~tA~r~~~~~~~vf~~ 80 (106)
T 2khv_A 1 MTFSECAALYIKAHRSSWKNTKHADQWTNTIKTYCGPVIGPLSVQDVDTKLIMKVLDPIWEQKPETASRLRGRIESVLDW 80 (106)
T ss_dssp CBHHHHHHHHHHTTGGGGTTSTHHHHHHHHHHHHTHHHHTTSBSSSCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 97999999999985013799889999999999998888299929996889999997999965199999999999999999
Q ss_pred HHHHHHHH-HHHHH
Q ss_conf 45520010-56651
Q gi|254780134|r 147 AVRQEYVA-INPCL 159 (348)
Q Consensus 147 a~~~~~i~-~NP~~ 159 (348)
|+..|++. .||+.
T Consensus 81 Ai~~g~~~~~NPA~ 94 (106)
T 2khv_A 81 ATVRGYREGDNPAR 94 (106)
T ss_dssp HHHHTSSCSCCTTS
T ss_pred HHHCCCCCCCCHHH
T ss_conf 99939867898276
No 23
>2v6e_A Protelemorase; hairpin telomere, hydrolase, resolvase, protelomerase, DNA distortion; 3.20A {Klebsiella phage PHIKO2}
Probab=97.30 E-value=0.00019 Score=46.04 Aligned_cols=133 Identities=14% Similarity=0.134 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHCCCCCCCCCCC-CCCEEEEECCCCCC-CCCHH-----HHHHCCH---HHHHHHHHH---HCCCCCC-CC
Q ss_conf 8999989898618873100256-64014430233211-33102-----4331121---689999964---2013322-11
Q gi|254780134|r 191 QPRLAFEFLLYSGLRCSDSCRA-GVQHLQNNIFSIKT-QKTGT-----IITVELP---DGFMKLLAM---TPIGKET-FF 256 (348)
Q Consensus 191 ~~~~~~~l~~~TG~R~~Ei~~L-~~~did~~~i~~~~-~Kt~~-----~~~vpl~---~~l~~~l~~---~~~~~~~-~~ 256 (348)
...+++.|++.||-|..||+.- .....+...+.+.. .|++. +..||.. +.+...++. .+..... -+
T Consensus 281 ~~~LAiGLAlATGRR~~EILktg~F~~s~~ysLlFsGQaKKr~~~e~~syEIPTLidAdlVIkAikrLR~l~~~e~l~~l 360 (558)
T 2v6e_A 281 MAPLAFALAALSGRRMIEIMLQGEFSVAGKYTVTFLGQAKKRSEDKGISRKIYTLCDATLFVSLVNELRSCPAAADFDEV 360 (558)
T ss_dssp GHHHHHHHHHHHCCCHHHHHTTCEEEECSSSEEEEECCTTCCCCSCCCEEEEECSSCHHHHHHHHHHHTTSGGGTTHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHCCEEEECCCCEEEEECHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCHHCCCCC
T ss_conf 89999999999276488764005565479846998403310689987754643203589999999999837102202442
Q ss_pred CC--CCCCCCCH-HH----HHHHHHHHHHHC--CCCCCCCHHHHHHHHHHHH---------CCCCHHH-HHHHHCCCCHH
Q ss_conf 22--24577587-78----999999999983--8899814026999999998---------4899889-99996499989
Q gi|254780134|r 257 IN--NDKQKMNA-TQ----FSIWFKAKATKA--GVNKSAHGVRKFSATISAD---------AGATAHE-LMATYGWKTVD 317 (348)
Q Consensus 257 ~~--~~g~~~~~-~~----~~~~~~~~~~~a--gi~~~~H~lRht~at~l~~---------~G~~~~~-i~~~lGHss~~ 317 (348)
.. ..+..... .. +...++.+.+.. ....++|++|+-++-...+ +++++.. ++.+|||.+.+
T Consensus 361 ~~~~~~~~~~~~N~~IN~~~a~~ln~~~k~lf~~~e~s~~DlRaIYa~IAf~~Ff~~d~r~k~vden~F~k~VLGHedid 440 (558)
T 2v6e_A 361 IKGYGENDTRSENGRINAILATAFNPWVKTFLGDDRRVYKDSRAIYARIAYEMFFRVDPRWKNVDEDVFFMEILGHDDEN 440 (558)
T ss_dssp TTCSSTTCCCCHHHHHHHHHHHHHHHHHHHHHSSSSCCTTHHHHHHHHHHHHHHTTTSGGGTTSCHHHHHHHHHTCSSTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHCCCCHH
T ss_conf 22223211277899999999999999999847886330043066887666765435532312687999999985789614
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254780134|r 318 QAETYT 323 (348)
Q Consensus 318 ~t~~Y~ 323 (348)
|+.+|.
T Consensus 441 Tq~hY~ 446 (558)
T 2v6e_A 441 TQLHYK 446 (558)
T ss_dssp GGGSSC
T ss_pred HHHHHH
T ss_conf 444565
No 24
>3m4a_A Putative type I topoisomerase; type IB, topib, protein-DNA complex, isomerase-DNA complex; HET: DNA; 1.65A {Deinococcus radiodurans} PDB: 2f4q_A*
Probab=96.06 E-value=0.014 Score=33.80 Aligned_cols=127 Identities=13% Similarity=0.160 Sum_probs=76.0
Q ss_pred HHHHHHHHCCCCCC-----------CCCCCCCCEE--EEECCCCC-CCCCHHHHHHCCH-HHHHHHHHHH---CCCCCCC
Q ss_conf 99898986188731-----------0025664014--43023321-1331024331121-6899999642---0133221
Q gi|254780134|r 194 LAFEFLLYSGLRCS-----------DSCRAGVQHL--QNNIFSIK-TQKTGTIITVELP-DGFMKLLAMT---PIGKETF 255 (348)
Q Consensus 194 ~~~~l~~~TG~R~~-----------Ei~~L~~~di--d~~~i~~~-~~Kt~~~~~vpl~-~~l~~~l~~~---~~~~~~~ 255 (348)
+++.|+-.|.+|+| -++.|+..|| +++.+.+. ..|.|....+-+. +.+...|... +......
T Consensus 126 ~~v~Lld~~~iRVGne~Y~~en~SyGlTTLr~~HV~i~~~~i~~~F~GK~Gv~~~~~i~d~~l~~~l~~l~~~~g~~lf~ 205 (346)
T 3m4a_A 126 LMTRLLHVARFRVGSDIYARQHKTYGLSTLRQRHVVVDGNTVTFRFKGKHGVSQHKATSDRTLAANMQKLLDLPGPWLFQ 205 (346)
T ss_dssp HHHHHHHHHCCCCCCHHHHHHHCCCCGGGCBGGGEEEETTEEEEEEECGGGCEEEEEECCHHHHHHHHHHHTSCSSBSCE
T ss_pred HHHHHHHHHCCCCCCCCCHHHCCCCCEEEEECCCEEEECCEEEEEEECCCCEEEEEEECCHHHHHHHHHHHHCCCCHHHH
T ss_conf 99999998433068821012149815002100335886896999997688738887746889999999998457815331
Q ss_pred CCCCC-C--CCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH-----CCC-------------CHHHHHHHHCCC
Q ss_conf 12224-5--77587789999999999838899814026999999998-----489-------------988999996499
Q gi|254780134|r 256 FINND-K--QKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISAD-----AGA-------------TAHELMATYGWK 314 (348)
Q Consensus 256 ~~~~~-g--~~~~~~~~~~~~~~~~~~agi~~~~H~lRht~at~l~~-----~G~-------------~~~~i~~~lGHs 314 (348)
|.... | .++++.-++..++..+. +.|..+||-..||.++. .+. .+.+++..|||+
T Consensus 206 ~~~~~~g~~~~v~s~dVN~YLk~~~g----~~TaKdFRTw~at~~~~~~L~~~~~~~s~~~~kk~i~~ai~~VA~~LgnT 281 (346)
T 3m4a_A 206 TVDAGGGERRRIHSTELNAYLREVIG----PFTAKDFRTWGGTLLAAEYLAQQGTESSERQAKKVLVDCVKFVADDLGNT 281 (346)
T ss_dssp EECCCC-CEEECCHHHHHHHHHHHHT----TSCHHHHHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HCCCCCCCEECCCHHHHHHHHHHHCC----CCCHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 00156887101679999999998669----98731303435499999999836788998999999999999999984897
Q ss_pred CHHHHHHHHH
Q ss_conf 9899999999
Q gi|254780134|r 315 TVDQAETYTK 324 (348)
Q Consensus 315 s~~~t~~Y~~ 324 (348)
..-.-.-|++
T Consensus 282 paVcRksYI~ 291 (346)
T 3m4a_A 282 PAVTRGSYIC 291 (346)
T ss_dssp HHHHHHHTSC
T ss_pred HHHHHHHCCC
T ss_conf 5445564378
No 25
>2h7g_X DNA topoisomerase 1; type IB topoisomerase, DNA binding, protein-DNA complex, isomerase/DNA complex; HET: DNA; 1.90A {Variola virus} PDB: 2h7f_X* 3igc_A* 1a41_A
Probab=91.53 E-value=0.33 Score=24.92 Aligned_cols=121 Identities=13% Similarity=0.094 Sum_probs=67.4
Q ss_pred HHHHHHHCCCCCC-----------CCCCCCCCEEE--EECCCCC-CCCCHHHHHHCC--HHHHHHHHHHHCCC-C-CCCC
Q ss_conf 9898986188731-----------00256640144--3023321-133102433112--16899999642013-3-2211
Q gi|254780134|r 195 AFEFLLYSGLRCS-----------DSCRAGVQHLQ--NNIFSIK-TQKTGTIITVEL--PDGFMKLLAMTPIG-K-ETFF 256 (348)
Q Consensus 195 ~~~l~~~TG~R~~-----------Ei~~L~~~did--~~~i~~~-~~Kt~~~~~vpl--~~~l~~~l~~~~~~-~-~~~~ 256 (348)
++.|+-.|.+|+| -+..|+..||. ++.|.+. ..|.|....+-+ .+.+...|...... + ..++
T Consensus 120 ~v~Lld~~~iRVGne~Ya~~N~SyGlTTLr~rHV~v~g~~i~f~F~GK~Gv~~~~~i~~d~~l~~~l~~~~~~~~~~~~l 199 (314)
T 2h7g_X 120 FMLMETMFFIRFGKMKYLKENETVGLLTLKNKHIEISPDKIVIKFVGKDKVSHEFVVHKSNRLYKPLLKLTDDSSPEEFL 199 (314)
T ss_dssp HHHHHHHHCCCCCCHHHHHHHCCCCSTTCBGGGEEEETTEEEEEEECGGGCEEEEEEETTSTTHHHHHHHCCTTCTTSBS
T ss_pred HHHHHHHHCEECCCHHHHHCCCCCCEEEEECCCEEEECCEEEEEEECCCCCEEEEEECCCHHHHHHHHHHHHCCCCHHEE
T ss_conf 99999862241577432220598150020101177879979999875888458999626589999999997557810157
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHC--------CC-----------CHHHHHHHHCCCCHH
Q ss_conf 22245775877899999999998388998140269999999984--------89-----------988999996499989
Q gi|254780134|r 257 INNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADA--------GA-----------TAHELMATYGWKTVD 317 (348)
Q Consensus 257 ~~~~g~~~~~~~~~~~~~~~~~~agi~~~~H~lRht~at~l~~~--------G~-----------~~~~i~~~lGHss~~ 317 (348)
+ .....+.++..++ ..+ .+..+||-..||.++.. .. -+.+++..|||+..-
T Consensus 200 f----~~v~~~~vn~~l~----~~~--~taKdFRTw~at~~a~~~l~~~~~~~~~~~~~kk~i~~~i~~vA~~LgNTpaV 269 (314)
T 2h7g_X 200 F----NKLSERKVYESIK----QFG--IRIKDLRTYGVNYTFLYNFWTNVKSISPLPSPKKLIALTIKQTAEVVGHTPSI 269 (314)
T ss_dssp S----TTCCHHHHHHHHG----GGT--SCHHHHHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHHHHHHHHHTCCTTT
T ss_pred E----EECCCHHHHHHHH----HCC--CHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 5----4446267899888----358--40788986462599999998516766756788999999999999983897555
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q gi|254780134|r 318 QAETYTKG 325 (348)
Q Consensus 318 ~t~~Y~~~ 325 (348)
.-.-|++-
T Consensus 270 cR~sYIhP 277 (314)
T 2h7g_X 270 SKRAYMAT 277 (314)
T ss_dssp HHHHSTHH
T ss_pred HHHHCCCH
T ss_conf 56745799
No 26
>2b9s_A Topoisomerase I-like protein; vanadate complex, isomerase/DNA complex; HET: DNA; 2.27A {Leishmania donovani}
Probab=81.27 E-value=2.1 Score=19.64 Aligned_cols=96 Identities=26% Similarity=0.307 Sum_probs=59.6
Q ss_pred HHHHHHHCCCCCC-----------CCCCCCCCEEE---EECCCCC-CCCCHHHH--HHCCHHHHHHHHHHHCC---CCCC
Q ss_conf 9898986188731-----------00256640144---3023321-13310243--31121689999964201---3322
Q gi|254780134|r 195 AFEFLLYSGLRCS-----------DSCRAGVQHLQ---NNIFSIK-TQKTGTII--TVELPDGFMKLLAMTPI---GKET 254 (348)
Q Consensus 195 ~~~l~~~TG~R~~-----------Ei~~L~~~did---~~~i~~~-~~Kt~~~~--~vpl~~~l~~~l~~~~~---~~~~ 254 (348)
++.|+-.|++|+| -++.|+..||. ++.+.+. ..|.|... .|...+.+...|..... .+..
T Consensus 280 av~LID~~alRvGnEkya~en~T~GltTLr~eHV~l~~~~~v~fdF~GK~gvr~~~~v~~d~~v~k~L~~~~~~k~pgd~ 359 (432)
T 2b9s_A 280 AMYFIDRLALRVGNEKGEDEADTVGCCSLRVEHIQLMPDNIVRFDFLGKDSIRYQNDVAVLPEVYALLQRFTRRKSPGMD 359 (432)
T ss_dssp HHHHHHHHCCCCCCCCCTTSCCCCCGGGCBGGGEEECTTSEEEEEEECGGGCEEEEEEECCHHHHHHHHHHHTTCCTTSB
T ss_pred HHHHHHHHCCCCCCHHHHHCCCCEEECCCCHHHEEECCCCEEEEEECCCCCCEEEEEEECCHHHHHHHHHHHHCCCCHHH
T ss_conf 99999973843488311002797844535475447648987999974776717999972378999999999756798376
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf 112224577587789999999999838899814026999999998
Q gi|254780134|r 255 FFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISAD 299 (348)
Q Consensus 255 ~~~~~~g~~~~~~~~~~~~~~~~~~agi~~~~H~lRht~at~l~~ 299 (348)
+| ..+++..++..++. .+-..|..+||-..||.++.
T Consensus 360 LF-----~~I~s~~vN~yLk~----~~~g~TAKdFRTwnAS~tl~ 395 (432)
T 2b9s_A 360 IF-----DQLNPTQLNDHLKS----FMDGLSAKVFRTYNASITLD 395 (432)
T ss_dssp TT-----TTCCHHHHHHHHTT----TSTTCCTTHHHHHHHHHHHH
T ss_pred HC-----CCCCHHHHHHHHHH----HCCCCCEECCCCCHHHHHHH
T ss_conf 20-----73898999999998----68999822621434699999
No 27
>1flo_A FLP recombinase; tyrosine recombinase, protein-DNA complex, holliday- junction, domain-swapping, ligase, lyase/DNA complex; 2.65A {Saccharomyces cerevisiae} SCOP: a.60.9.1 d.163.1.1 PDB: 1m6x_A* 1p4e_A*
Probab=77.10 E-value=2.9 Score=18.81 Aligned_cols=230 Identities=12% Similarity=0.115 Sum_probs=106.1
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHH-HCCCCH----HHCCHHHHHHHHHHHCC-------------CHHHHHHHHH
Q ss_conf 99983554356978899999999999999-569995----89699999998875159-------------9789999999
Q gi|254780134|r 77 EYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDY----RKITTKHIRSGVESRKH-------------TPSSAIQFLT 138 (348)
Q Consensus 77 ~y~~~~~~~~l~~~T~~~~~~~~~~~~~~-~g~~~l----~~it~~~i~~~~~~~~~-------------~~~t~n~~~~ 138 (348)
.|+........+-+|...|++.+..=+.+ .++..+ .-=.+.++++.+++... .+.+...+.+
T Consensus 41 ~~m~~~~~t~iK~sTF~kY~~~I~~sl~fD~~~k~V~F~YhLk~~~~L~~~L~~a~~p~~F~I~~~k~~~~~~~~~~~~s 120 (422)
T 1flo_A 41 CWMITHNGTAIKRATFMSYNTIISNSLSFDIVNKSLQFKYKTQKATILEASLKKLIPAWEFTIIPYYGQKHQSDITDIVS 120 (422)
T ss_dssp HHHHHTTTCCCBHHHHHHHHHHHHTTCEEETTTTEEEEECSCSCHHHHHHHHHHHSTTCEEEEECCC-----CCHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHCEEEECCCCEEEEEEECCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHH
T ss_conf 45200044002088899999987412376247867999996288899999999854875999813544345660787888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHC--CCCCCCCCCCCCCCCHHHHHHHHH-------HHCCCCH----HHHHHHHHHHCCCC
Q ss_conf 9999996445520010566510--346432444421165234456666-------4037808----99998989861887
Q gi|254780134|r 139 SMRVLFKWAVRQEYVAINPCLS--VERPKRKTEGIRPWTKEDMQQFKS-------FWSEGSQ----PRLAFEFLLYSGLR 205 (348)
Q Consensus 139 ~l~~~~~~a~~~~~i~~NP~~~--v~~~~~~~~~~~~~t~~ei~~~~~-------~~~~~~~----~~~~~~l~~~TG~R 205 (348)
.+..-+.-- .+.-..|-..+ .... .-+.++|..|.. .-..... .+.++.+.++-+||
T Consensus 121 ~~~~~~~~~--~~~~~g~~~~~~~~~~l--------~~~~e~Iw~~v~~v~~sie~~t~~~straey~flll~Tf~NCcR 190 (422)
T 1flo_A 121 SLQLQFESS--EEADKGNSHSKKMLKAL--------LSEGESIWEITEKILNSFEYTSRFTKTKTLYQFLFLATFINCGR 190 (422)
T ss_dssp HHHHHHHC-------CTTHHHHHHHHHH--------HHSSCCHHHHHHHHHHTTTTTCSSHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHCC--CCCCCCCCHHHHHHHHH--------HHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 999884033--21133320268898887--------65031699999999999989854722889999999999873302
Q ss_pred CCCCCCCCCCEEE---E----ECC--CCCCCCCHHHHHH---CCH---HHHH---HHHHHH-CCCCCCC-CCCC----CC
Q ss_conf 3100256640144---3----023--3211331024331---121---6899---999642-0133221-1222----45
Q gi|254780134|r 206 CSDSCRAGVQHLQ---N----NIF--SIKTQKTGTIITV---ELP---DGFM---KLLAMT-PIGKETF-FINN----DK 261 (348)
Q Consensus 206 ~~Ei~~L~~~did---~----~~i--~~~~~Kt~~~~~v---pl~---~~l~---~~l~~~-~~~~~~~-~~~~----~g 261 (348)
.+|+-.+...-++ + ..+ .++.+||++++.| |+. +.|+ .+|... |.....- ..+. ..
T Consensus 191 ~sDLKN~DP~TFeiv~Nk~LG~ilRalV~ETKTrk~RfIyFFPv~gr~DpLlAL~d~l~~~~Pv~K~~srtsn~~s~~Q~ 270 (422)
T 1flo_A 191 FSDIKNVDPKSFKLVQNKYLGVIIQCLVTETKTSVSRHIYFFSARGRIDPLVYLDEFLRNSEPVLKRVNRTGNSSSNKQE 270 (422)
T ss_dssp HHHHHTCEEEEEEEECCTTTSCEEEEEECSCTTSCCEEEEECCCSSSCCHHHHHHHHHHHCCCEECCCCBTTCCSCCCCC
T ss_pred CHHCCCCCCCCEEEECCCCHHHHEEEEEECCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHH
T ss_conf 00024689331576235420002256740355665204999755898772687999987348865544545666322567
Q ss_pred CCCCHHHH----HHHHHHHHHHC--CCCCC--CCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHH
Q ss_conf 77587789----99999999983--88998--14026999999998489988999996499989
Q gi|254780134|r 262 QKMNATQF----SIWFKAKATKA--GVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVD 317 (348)
Q Consensus 262 ~~~~~~~~----~~~~~~~~~~a--gi~~~--~H~lRht~at~l~~~G~~~~~i~~~lGHss~~ 317 (348)
-.+-.+++ .+.+.+-.... +|++. .|=-||.-+|.|...+.+ ..+.-+..||+..
T Consensus 271 yQlLrdsLv~~YdRFl~K~~~e~iF~I~nGPKSHlGRHLM~SyLs~~~lg-~~vs~~GNWS~~r 333 (422)
T 1flo_A 271 YQLLKDNLVRSYNKALKKNAPYSIFAIKNGPKSHIGRHLMTSFLSMKGLT-ELTNVVGNWSDKR 333 (422)
T ss_dssp EESSCTTHHHHHHHHHHHHCSSGGGGSTTCCSTTHHHHHHHHHHHHTTCT-TSHHHHHTCCCC-
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHHHHHHCCCCCC-CEECCCCCCCHHH
T ss_conf 88888888887889997378875440578966777788999884305677-5111467730134
No 28
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis}
Probab=34.66 E-value=16 Score=13.93 Aligned_cols=42 Identities=17% Similarity=0.044 Sum_probs=23.4
Q ss_pred CCCEEEECCCCCEEEEEEE-CCC--CEEECCCCCCHHHHHHHHHH
Q ss_conf 9818962289938999970-895--65755889998899999999
Q gi|254780134|r 9 PFVTKERTRHGKIIYYFRK-GHG--RRIRLPYPHESTFIPAYMSA 50 (348)
Q Consensus 9 ~~v~~~~~r~G~~~~~~r~-~~~--~~~~~~~~~~~~~~~~~~~a 50 (348)
.+++-....+|...|+||. ..| +++.++....-.+.+|...+
T Consensus 24 ~GL~l~v~p~G~k~w~~ry~~~gk~~~~~LG~yP~~sL~~AR~~a 68 (88)
T 3jtz_A 24 HGLYLLVKPGGSRHWYLKYRISGKESRIALGAYPAISLSDARQQR 68 (88)
T ss_dssp TTEEEEECTTSCEEEEEEEEETTEEEEEEEEETTTSCHHHHHHHH
T ss_pred CCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCHHHHHHHH
T ss_conf 981999970995899999997890789976289996799999999
No 29
>2bdd_A ACP-synthase; structural genomics, structural genomics consortium, SGC, transferase; 2.28A {Plasmodium yoelii yoelii}
Probab=33.97 E-value=17 Score=13.85 Aligned_cols=47 Identities=21% Similarity=0.140 Sum_probs=32.4
Q ss_pred HHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHCCHHHHHHHHHHHCC
Q ss_conf 89861887310025664014430233211331024331121689999964201
Q gi|254780134|r 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250 (348)
Q Consensus 198 l~~~TG~R~~Ei~~L~~~did~~~i~~~~~Kt~~~~~vpl~~~l~~~l~~~~~ 250 (348)
=++.||++..-..++.|.||. +.....|++ .+-++..+.+++.....
T Consensus 96 KALGtG~~~~~~~gi~~~DIe-----V~~~~~GkP-~l~l~g~a~~~~~~~gi 142 (182)
T 2bdd_A 96 KSMGRGLSSISKYGLSMNDIE-----IKNDKYGKP-HVYLYGKAKKVAYEMGI 142 (182)
T ss_dssp HHTTC---------CCGGGEE-----EEECTTSCE-EEEECHHHHHHHHHHTC
T ss_pred HHHCCCCCCCCCCCCCEEEEE-----EEECCCCCE-EEEECHHHHHHHHHCCC
T ss_conf 874356555566884404899-----998899990-89989899999998699
No 30
>1hmj_A RPB5, protein (subunit H); RNA polymerase, archaea; NMR {Methanocaldococcus jannaschii} SCOP: d.78.1.1
Probab=32.19 E-value=13 Score=14.58 Aligned_cols=45 Identities=16% Similarity=0.099 Sum_probs=29.2
Q ss_pred CCCCCHHHHHHHHHHHCCCCHHHHHH-----HHHHHCCCCCCCCCCCCCCE
Q ss_conf 21165234456666403780899998-----98986188731002566401
Q gi|254780134|r 171 IRPWTKEDMQQFKSFWSEGSQPRLAF-----EFLLYSGLRCSDSCRAGVQH 216 (348)
Q Consensus 171 ~~~~t~~ei~~~~~~~~~~~~~~~~~-----~l~~~TG~R~~Ei~~L~~~d 216 (348)
+..++++|...++........ .+.. -++-|.|++.|+++.+.+..
T Consensus 12 H~~l~~ee~~~il~~y~i~~~-qLP~I~~~DPva~~~g~~~GdiikI~R~S 61 (78)
T 1hmj_A 12 HEIVPKEEVEEILKRYNIKIQ-QLPKIYEDDPVIQEIGAKEGDVVRVIRKS 61 (78)
T ss_pred CEECCHHHHHHHHHHHCCCHH-HCCEECCCCHHHHHHCCCCCCEEEEEECC
T ss_conf 388799999999998199988-99921361997897389999489999748
No 31
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=31.40 E-value=18 Score=13.58 Aligned_cols=35 Identities=17% Similarity=0.200 Sum_probs=28.0
Q ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHH
Q ss_conf 4026999999998489988999996499989999999
Q gi|254780134|r 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 (348)
Q Consensus 287 H~lRht~at~l~~~G~~~~~i~~~lGHss~~~t~~Y~ 323 (348)
-|++ +.+..|+..|.+..+|+.+|| -|+.-..+|.
T Consensus 18 DD~~-sv~hELa~~gysvqqIa~~LG-VsvrKv~~YL 52 (55)
T 2x48_A 18 DDLV-SVAHELAKMGYTVQQIANALG-VSERKVRRYL 52 (55)
T ss_dssp HHHH-HHHHHHHHTTCCHHHHHHHHT-SCHHHHHHHH
T ss_pred CHHH-HHHHHHHHCCCCHHHHHHHHC-HHHHHHHHHH
T ss_conf 4099-999999984872999998846-1199999987
No 32
>2qg8_A Acyl carrier protein synthase PY06285; malaria, 3'5'ADP, SGC, structural genomics consortium, transferase; HET: A3P; 2.00A {Plasmodium yoelii yoelii}
Probab=27.69 E-value=21 Score=13.18 Aligned_cols=46 Identities=22% Similarity=0.166 Sum_probs=32.2
Q ss_pred HHHCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHCCHHHHHHHHHHHCC
Q ss_conf 9861887310025664014430233211331024331121689999964201
Q gi|254780134|r 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250 (348)
Q Consensus 199 ~~~TG~R~~Ei~~L~~~did~~~i~~~~~Kt~~~~~vpl~~~l~~~l~~~~~ 250 (348)
++.||.+...-.++.|.||. +.....|++ .|-++..+.+++.....
T Consensus 78 AlGtg~~~~~~~gi~~~dIe-----I~~~~~G~P-~l~l~g~a~~~~~~~gi 123 (163)
T 2qg8_A 78 SMGRGLSSISKYGLSMNDIE-----IKNDKYGKP-HVYLYGKAKKVAYEMGI 123 (163)
T ss_dssp HTTCCBC-----CBCGGGEE-----EEECTTSCE-EEEECHHHHHHHHHTTC
T ss_pred HHCCCCCCCCCCCCCEEEEE-----EEECCCCCC-EEEECHHHHHHHHHCCC
T ss_conf 75356654567885315899-----998899992-89989899999998699
No 33
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=24.97 E-value=24 Score=12.86 Aligned_cols=31 Identities=16% Similarity=0.226 Sum_probs=24.1
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 99999984899889999964999899999999
Q gi|254780134|r 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324 (348)
Q Consensus 293 ~at~l~~~G~~~~~i~~~lGHss~~~t~~Y~~ 324 (348)
.|-.|.++|.+..+|+..+| -|..|.-+|..
T Consensus 13 ~a~~l~~~G~s~~~iA~~~g-Vsr~TlYrylp 43 (52)
T 1jko_C 13 QISRLLEKGHPRQQLAIIFG-IGVSTLYRYFP 43 (52)
T ss_dssp HHHHHHHTTCCHHHHHHTTS-CCHHHHHHHSC
T ss_pred HHHHHHHCCCCHHHHHHHHC-CCHHHHHHHCC
T ss_conf 99999997898999999979-79999999851
No 34
>1dzf_A DNA-directed RNA polymerases I, II, and III 27 KD polypeptide; RNA polymerase subunit; 1.9A {Saccharomyces cerevisiae} SCOP: c.52.3.1 d.78.1.1 PDB: 1i3q_E 1i50_E 1i6h_E 1k83_E* 1nik_E 1nt9_E 1pqv_E 1r5u_E 1r9s_E* 1r9t_E* 1sfo_E* 1twa_E* 1twc_E* 1twf_E* 1twg_E* 1twh_E* 1wcm_E 1y1v_E 1y1w_E 1y1y_E ...
Probab=24.50 E-value=9.4 Score=15.47 Aligned_cols=45 Identities=11% Similarity=0.131 Sum_probs=28.7
Q ss_pred CCCCCHHHHHHHHHHHCCCCHHHHH-----HHHHHHCCCCCCCCCCCCCCE
Q ss_conf 2116523445666640378089999-----898986188731002566401
Q gi|254780134|r 171 IRPWTKEDMQQFKSFWSEGSQPRLA-----FEFLLYSGLRCSDSCRAGVQH 216 (348)
Q Consensus 171 ~~~~t~~ei~~~~~~~~~~~~~~~~-----~~l~~~TG~R~~Ei~~L~~~d 216 (348)
+..++++|...++........+ +. =-++.|.|+|+|+++.+.+..
T Consensus 153 h~~l~~ee~~~~~~~y~~~~~~-lP~i~~~Dpva~~~g~~~g~v~kI~R~s 202 (215)
T 1dzf_A 153 HIRLSSDEKRELLKRYRLKESQ-LPRIQRADPVALYLGLKRGEVVKIIRKS 202 (215)
T ss_dssp EEECCHHHHHHHHHHTTCCGGG-SCEECTTCHHHHHHTCCTTCEEEEECTT
T ss_pred EEECCHHHHHHHHHHHCCCHHH-CCCCCCCCHHHHHCCCCCCCEEEEEEEC
T ss_conf 0881778999999995999778-8920462975663189899589999718
No 35
>2waq_H DNA-directed RNA polymerase RPO5 subunit; multi-subunit, transcription; 3.35A {Sulfolobus shibatae} PDB: 2wb1_H 2pmz_H 3hkz_H
Probab=23.18 E-value=11 Score=15.10 Aligned_cols=45 Identities=7% Similarity=-0.039 Sum_probs=28.5
Q ss_pred CCCCCHHHHHHHHHHHCCCCHHHHHH-----HHHHHCCCCCCCCCCCCCCE
Q ss_conf 21165234456666403780899998-----98986188731002566401
Q gi|254780134|r 171 IRPWTKEDMQQFKSFWSEGSQPRLAF-----EFLLYSGLRCSDSCRAGVQH 216 (348)
Q Consensus 171 ~~~~t~~ei~~~~~~~~~~~~~~~~~-----~l~~~TG~R~~Ei~~L~~~d 216 (348)
+..++++|...+++....... .+.. -++.|.|++.|+++.+.+..
T Consensus 20 H~il~~eE~~~ll~~y~i~~~-qLP~I~~~DPva~~~g~k~GdvvkI~R~s 69 (84)
T 2waq_H 20 HEVLSIDEAYKILKELGIRPE-QLPWIRASDPVARSINAKPGDIIRIIRKS 69 (84)
T ss_dssp EEECCHHHHHHHHHHHTCCGG-GSCCCCSSSHHHHHHTCCTTSCEEEEEEE
T ss_pred CEECCHHHHHHHHHHHCCCHH-HCCEECCCCHHHHHHCCCCCCEEEEEECC
T ss_conf 288599999999998659987-89800461986786289889789999758
No 36
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=22.57 E-value=26 Score=12.56 Aligned_cols=43 Identities=9% Similarity=-0.129 Sum_probs=22.7
Q ss_pred CCCEEEECCCCCEEEEEEE-CCC--CEEECCCCCCHHHHHHHHHHH
Q ss_conf 9818962289938999970-895--657558899988999999998
Q gi|254780134|r 9 PFVTKERTRHGKIIYYFRK-GHG--RRIRLPYPHESTFIPAYMSAL 51 (348)
Q Consensus 9 ~~v~~~~~r~G~~~~~~r~-~~~--~~~~~~~~~~~~~~~~~~~a~ 51 (348)
.+++-....+|...|+|+. ..| +.+.++....-.+.+|...+.
T Consensus 24 ~GL~lrV~~~G~K~f~~ry~~~gk~~~i~LG~yp~~sL~~AR~~a~ 69 (108)
T 3ju0_A 24 FGMHLLVHPNGSKYWRLSYRFEKKQRLLALGVYPAVSLADARQRRD 69 (108)
T ss_dssp TTEEEEECTTSCEEEEEEEEETTEEEEEEEEEETTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCEEEEEEEEECCCCEEEEECCCCCCCHHHHHHHHH
T ss_conf 9459999739968999999867950477416888858999999999
No 37
>3h0g_E DNA-directed RNA polymerases I, II, and III subunit rpabc1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=22.22 E-value=11 Score=15.00 Aligned_cols=47 Identities=6% Similarity=0.005 Sum_probs=28.9
Q ss_pred CCCCCCHHHHHHHHHHHCCCCHHH-HH---HHHHHHCCCCCCCCCCCCCCE
Q ss_conf 421165234456666403780899-99---898986188731002566401
Q gi|254780134|r 170 GIRPWTKEDMQQFKSFWSEGSQPR-LA---FEFLLYSGLRCSDSCRAGVQH 216 (348)
Q Consensus 170 ~~~~~t~~ei~~~~~~~~~~~~~~-~~---~~l~~~TG~R~~Ei~~L~~~d 216 (348)
.+..++++|...++.........- .+ =-++.|.|+|+|+++.+.+..
T Consensus 147 ~h~~l~~ee~~~~l~~~~~~~~~lP~i~~~Dp~~~~~g~~~g~v~kI~R~s 197 (210)
T 3h0g_E 147 KHILLSPDEKKELLDRYKLRETQLPRIQLADPVARYLGLKRGEVVKIVRRS 197 (210)
T ss_dssp CEECCCHHHHHHHHHHTCCCTTTSCCCCTTCHHHHHHTCCTTCEEEEECCC
T ss_pred CEEEECHHHHHHHHHHHCCCHHHCCCCCCCCHHHHHCCCCCCCEEEEEECC
T ss_conf 459807899999999827997778843563975661079899589999738
No 38
>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1
Probab=21.50 E-value=28 Score=12.43 Aligned_cols=20 Identities=40% Similarity=0.713 Sum_probs=16.1
Q ss_pred CCCCCCCEEEECCCCCEEEE
Q ss_conf 88879818962289938999
Q gi|254780134|r 5 LRLPPFVTKERTRHGKIIYY 24 (348)
Q Consensus 5 ~~~p~~v~~~~~r~G~~~~~ 24 (348)
..||++=....+.+|++||+
T Consensus 2 ~~LP~GWe~~~d~~G~~Yyi 21 (37)
T 1e0m_A 2 MGLPPGWDEYKTHNGKTYYY 21 (37)
T ss_dssp CCSCTTEEEEECSSCCEEEE
T ss_pred CCCCCCCEEEECCCCCEEEE
T ss_conf 87889826889899999988
Done!