HHSEARCH alignment of GI: 254780134 and SCOP domain: d1a41a_

Alignment
>d1a41a_ d.163.1.2 (A:) Eukaryotic DNA topoisomerase I, catalytic core {Vaccinia virus [TaxId: 10245]}
Probab=92.54  E-value=0.16  Score=25.38  Aligned_cols=120  Identities=13%  Similarity=0.094  Sum_probs=70.5

Q ss_pred             HHHHHHHCCCCCC-----------CCCCCCCCEEE--EECCCCC-CCCCHHHHHHCC--HHHHHHHHHHHCC---CCCCC
Q ss_conf             9898986188731-----------00256640144--3023321-133102433112--1689999964201---33221
Q gi|254780134|r  195 AFEFLLYSGLRCS-----------DSCRAGVQHLQ--NNIFSIK-TQKTGTIITVEL--PDGFMKLLAMTPI---GKETF  255 (348)
Q Consensus       195 ~~~l~~~TG~R~~-----------Ei~~L~~~did--~~~i~~~-~~Kt~~~~~vpl--~~~l~~~l~~~~~---~~~~~  255 (348)
                      ++.|+-.|.+|+|           -+..|+..||.  ++.+.+. ..|.|....+-+  .+.+...|.....   .+..+
T Consensus        40 vv~Lld~~~iRvGne~Ya~~n~SyGltTLr~~Hv~i~~~~i~f~F~GKsGv~~~~~i~~d~~l~~~l~~~~~~~~~~~~l  119 (230)
T d1a41a_          40 FMLMETMFFIRFGKMKYLKENETVGLLTLKNKHIEISPDEIVIKFVGKDKVSHEFVVHKSNRLYKPLLKLTDDSSPEEFL  119 (230)
T ss_dssp             HHHHHHCCC---------CCHHHHHHHTCBGGGEEEETTEEEECEEETTTEEECCEEETTSSSHHHHHHHCCTTCTTSBS
T ss_pred             HHHHHHHHCEECCCHHHHHHCCCCCEEEEEHHHEEEECCEEEEEEECCCCCEEEEEEECCHHHHHHHHHHHHCCCCCCCC
T ss_conf             99999973651688656762598351220131067718926998755877348998833789999999998666952000


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH--------CCC-----------CHHHHHHHHCCCCH
Q ss_conf             12224577587789999999999838899814026999999998--------489-----------98899999649998
Q gi|254780134|r  256 FINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISAD--------AGA-----------TAHELMATYGWKTV  316 (348)
Q Consensus       256 ~~~~~g~~~~~~~~~~~~~~~~~~agi~~~~H~lRht~at~l~~--------~G~-----------~~~~i~~~lGHss~  316 (348)
                      |     .....+.++..++.    .|  .+..+||-..||.++.        ...           .+.+++..|||+..
T Consensus       120 f-----~~v~~~~vn~yl~~----~~--~taKdFRTw~at~~~~~~l~~~~~~~~~~~~~kk~i~~~i~~vA~~LgNTpa  188 (230)
T d1a41a_         120 F-----NKLSERKVYECIKQ----FG--IRIKDLRTYGVNYTFLYNFWTNVKSISPLPSPKKLIALTIKQTAEVVGHTPS  188 (230)
T ss_dssp             S-----TTCCHHHHHHHHHH----TT--CCHHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHSSCCC
T ss_pred             C-----CCCCCHHHHHHHHH----CC--CCHHHHHHHCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHH
T ss_conf             0-----02563377888887----37--6099999865289999999850687787778899999999999999589766


Q ss_pred             HHHHHHHHH
Q ss_conf             999999999
Q gi|254780134|r  317 DQAETYTKG  325 (348)
Q Consensus       317 ~~t~~Y~~~  325 (348)
                      -.-.-|++-
T Consensus       189 V~rksYI~P  197 (230)
T d1a41a_         189 ISKRAYMAT  197 (230)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHCCCH
T ss_conf             678865799


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: DNA breaking-rejoining enzymes
superfamily: DNA breaking-rejoining enzymes
family: Eukaryotic DNA topoisomerase I, catalytic core
domain: Eukaryotic DNA topoisomerase I, catalytic core
species: Vaccinia virus [TaxId: 10245]