HHSEARCH alignment of GI: 254780134 and SCOP domain: d1aiha_

Alignment

Probab=99.91  E-value=6e-25  Score=177.74  Aligned_cols=149  Identities=15%  Similarity=0.134  Sum_probs=115.6

Q ss_pred             CCCCCCHHHHHHHHHHHCC--CCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHCCHHHHHHHHHH
Q ss_conf             4211652344566664037--80899998989861887310025664014430233211331024331121689999964
Q gi|254780134|r  170 GIRPWTKEDMQQFKSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM  247 (348)
Q Consensus       170 ~~~~~t~~ei~~~~~~~~~--~~~~~~~~~l~~~TG~R~~Ei~~L~~~did~~~i~~~~~Kt~~~~~vpl~~~l~~~l~~  247 (348)
                      +...++++|+.+|++.+..  ....++++.|+++||||++|+++|+|+||+++.+.+...|+++.+.|||++.+.++|..
T Consensus         3 ~~~~Lt~eEi~~l~~~~~~~~~~~~~~~i~l~~~tG~R~~E~~~L~~~dI~~~~~~~~~~K~~~~r~ipl~~~~~~~l~~   82 (170)
T d1aiha_           3 ELAFLYERDIYRLLAECDNSRNPDLGLIVRICLATGARWSEAETLTQSQVMPYKITFTNTKSKKNRTVPISDELFDMLPK   82 (170)
T ss_dssp             CCCCCCHHHHHHHHHHHTTSSSTTHHHHHHHHHHHCCCHHHHHTCBTTTEETTEEEEESSSSSCEEEEECCHHHHHHSCC
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             46689999999999986365896699999999997776112444331024421102114444300577669999999875


Q ss_pred             HCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             20133221122245775877899999999998388998140269999999984899889999964999899999999998
Q gi|254780134|r  248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD  327 (348)
Q Consensus       248 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~agi~~~~H~lRht~at~l~~~G~~~~~i~~~lGHss~~~t~~Y~~~~~  327 (348)
                      .   ....|      +.....+...+.+.....+...++|+|||||+|.|.++|+++.+|+.+|||++..||++|++..+
T Consensus        83 ~---~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~H~lRht~at~l~~~g~~~~~i~~~lGH~~~~~t~~Y~~~~~  153 (170)
T d1aiha_          83 K---RGRLF------NDAYESFENAVLRAEIELPKGQLTHVLRHTFASHFMMNGGNILVLKEILGHSTIEMTMRYAHFAP  153 (170)
T ss_dssp             C---SSBSS------CCCHHHHHHHHHHTTCCCCTTCTTTHHHHHHHHHHHHTTCCHHHHHHHHTCSSHHHHGGGGGGSC
T ss_pred             H---HCCCC------CCCHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHCCCH
T ss_conf             1---00110------11112443345666502577610111046551455216989999999808999899998876799

SCOP domain information

class: Alpha and beta proteins (a+b)
fold: DNA breaking-rejoining enzymes
superfamily: DNA breaking-rejoining enzymes
family: Lambda integrase-like, catalytic core
domain: Integrase
species: Bacteriophage HP1 [TaxId: 10690]