BLAST/PSIBLAST alignment of GI: 254780134 and GI: 49475466 at iteration 1
>gi|49475466|ref|YP_033507.1| integrase /recombinase [Bartonella henselae str. Houston-1] Length = 345
>gi|49238272|emb|CAF27486.1| Integrase /recombinase [Bartonella henselae str. Houston-1] Length = 345
Score = 208 bits (529), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 121/341 (35%), Positives = 190/341 (55%), Gaps = 9/341 (2%)
Query: 6 RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHEST-FIPAYMSAL---TGSTPKREYI 61
R PP + KE TRHGK+++Y R GHG R R+ + + F+ +Y A+ TPKR +
Sbjct: 4 RRPPHLVKETTRHGKVVWYVRIGHGPRYRIEGTYGTQEFVDSYTLAIKQAQNGTPKR--M 61
Query: 62 NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
R + WL+ +Y +S W + + +++ + + + G+ Y+ I +HI
Sbjct: 62 TQTRLTEGSFDWLLHQYLQSMQWHNQSESTKKVKYRILNNVSKHIGNHAYKSIEKRHILD 121
Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR-KTEGIRPWTKEDMQ 180
V+ R+ TP++A FLTS+ LF WAV + NP L+++ PK +EG++PW +ED+
Sbjct: 122 AVDRRRATPAAAKHFLTSLNGLFNWAVDNALLNRNPALNIKAPKSLNSEGLQPWLEEDID 181
Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP-- 238
++ WS GS R+ + LLY+GLR D+ R G + +++NI +KT+K+ V LP
Sbjct: 182 KYYHHWSHGSHERVWIDVLLYTGLRRGDAVRIGWKDVKDNIIHLKTEKSQFKTDVFLPIL 241
Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISA 298
+ L + PIG ETF K+ F F+ AG+ KSAHG+RK +AT +A
Sbjct: 242 PELTETLQIGPIGDETFICGKSGNKLVKESFGNLFREACNAAGIKKSAHGLRKLAATRAA 301
Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
+AGAT ++ A +GW A YTK ADR RL I+ +++
Sbjct: 302 NAGATVSQMKALFGWTEDKMASLYTKTADRKRLAIEAIKKL 342