BLAST/PSIBLAST alignment of GI: 254780134 and GI: 49475466 at iteration 1
>gi|49475466|ref|YP_033507.1| integrase /recombinase [Bartonella henselae str. Houston-1] Length = 345
>gi|49238272|emb|CAF27486.1| Integrase /recombinase [Bartonella henselae str. Houston-1] Length = 345
 Score =  208 bits (529), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 121/341 (35%), Positives = 190/341 (55%), Gaps = 9/341 (2%)

Query: 6   RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHEST-FIPAYMSAL---TGSTPKREYI 61
           R PP + KE TRHGK+++Y R GHG R R+   + +  F+ +Y  A+      TPKR  +
Sbjct: 4   RRPPHLVKETTRHGKVVWYVRIGHGPRYRIEGTYGTQEFVDSYTLAIKQAQNGTPKR--M 61

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
              R    +  WL+ +Y +S  W + + +++       + + +  G+  Y+ I  +HI  
Sbjct: 62  TQTRLTEGSFDWLLHQYLQSMQWHNQSESTKKVKYRILNNVSKHIGNHAYKSIEKRHILD 121

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR-KTEGIRPWTKEDMQ 180
            V+ R+ TP++A  FLTS+  LF WAV    +  NP L+++ PK   +EG++PW +ED+ 
Sbjct: 122 AVDRRRATPAAAKHFLTSLNGLFNWAVDNALLNRNPALNIKAPKSLNSEGLQPWLEEDID 181

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP-- 238
           ++   WS GS  R+  + LLY+GLR  D+ R G + +++NI  +KT+K+     V LP  
Sbjct: 182 KYYHHWSHGSHERVWIDVLLYTGLRRGDAVRIGWKDVKDNIIHLKTEKSQFKTDVFLPIL 241

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISA 298
               + L + PIG ETF       K+    F   F+     AG+ KSAHG+RK +AT +A
Sbjct: 242 PELTETLQIGPIGDETFICGKSGNKLVKESFGNLFREACNAAGIKKSAHGLRKLAATRAA 301

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           +AGAT  ++ A +GW     A  YTK ADR RL I+  +++
Sbjct: 302 NAGATVSQMKALFGWTEDKMASLYTKTADRKRLAIEAIKKL 342