BLAST/PSIBLAST alignment of GI: 254780134 and GI: 85716638 at iteration 1
>gi|85716638|ref|ZP_01047608.1| Integrase /recombinase [Nitrobacter sp. Nb-311A] Length = 371
>gi|85696639|gb|EAQ34527.1| Integrase /recombinase [Nitrobacter sp. Nb-311A] Length = 371
 Score =  210 bits (535), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 119/334 (35%), Positives = 177/334 (52%), Gaps = 11/334 (3%)

Query: 6   RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHEST-FIPAYMSALTGSTPKREYINSP 64
           R PP++  ERTRHG  ++Y R+ HG RIRL   + S  F   Y +AL  +      + S 
Sbjct: 4   RRPPYLHSERTRHGARVWYVRRHHGGRIRLRADYGSAAFWQEYRAALDAAPA---LVASA 60

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
             K  TLKW +  YR S+ W +L++ +R   E+ F ++I   G     +I    IR G E
Sbjct: 61  IGKSGTLKWALDRYRASSAWATLSLATRRQRENIFRRVIETGGKTPLTEIDDDVIRDGRE 120

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE--RPKRKTEGIRPWTKEDMQQF 182
            R  TP  A  F+ +MR    W V ++ +  NP   V+        +G   WT+ ++ +F
Sbjct: 121 RRAATPHQANSFIKAMRAFCAWCVEEKLMTKNPTSGVKLLTGPNDADGFHTWTQAELDRF 180

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-----TGTIITVEL 237
           ++ W  G++ RLAF+ LLY+GLR  D+ R G QH+++ + SI+T+K      G ++ + +
Sbjct: 181 EARWKVGTRERLAFDVLLYTGLRRGDAVRVGRQHVKDGVISIRTEKHARGKAGELVAIPI 240

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATIS 297
                  LA TP G+  F IN   Q      F  WF+    +A    SAHG+RK  AT +
Sbjct: 241 LAPLAASLAATPTGELEFLINERGQPWRKESFGNWFRDVCREANCPGSAHGLRKAGATRA 300

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           A+ GA+  +LMA +GW T   A+ YT+ ADR RL
Sbjct: 301 AEKGASERQLMAIFGWTTGKMAQHYTRSADRARL 334