BLAST/PSIBLAST alignment of GI: 254780134 and GI: 85716638 at iteration 1
>gi|85716638|ref|ZP_01047608.1| Integrase /recombinase [Nitrobacter sp. Nb-311A] Length = 371
>gi|85696639|gb|EAQ34527.1| Integrase /recombinase [Nitrobacter sp. Nb-311A] Length = 371
Score = 210 bits (535), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 119/334 (35%), Positives = 177/334 (52%), Gaps = 11/334 (3%)
Query: 6 RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHEST-FIPAYMSALTGSTPKREYINSP 64
R PP++ ERTRHG ++Y R+ HG RIRL + S F Y +AL + + S
Sbjct: 4 RRPPYLHSERTRHGARVWYVRRHHGGRIRLRADYGSAAFWQEYRAALDAAPA---LVASA 60
Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
K TLKW + YR S+ W +L++ +R E+ F ++I G +I IR G E
Sbjct: 61 IGKSGTLKWALDRYRASSAWATLSLATRRQRENIFRRVIETGGKTPLTEIDDDVIRDGRE 120
Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE--RPKRKTEGIRPWTKEDMQQF 182
R TP A F+ +MR W V ++ + NP V+ +G WT+ ++ +F
Sbjct: 121 RRAATPHQANSFIKAMRAFCAWCVEEKLMTKNPTSGVKLLTGPNDADGFHTWTQAELDRF 180
Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-----TGTIITVEL 237
++ W G++ RLAF+ LLY+GLR D+ R G QH+++ + SI+T+K G ++ + +
Sbjct: 181 EARWKVGTRERLAFDVLLYTGLRRGDAVRVGRQHVKDGVISIRTEKHARGKAGELVAIPI 240
Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATIS 297
LA TP G+ F IN Q F WF+ +A SAHG+RK AT +
Sbjct: 241 LAPLAASLAATPTGELEFLINERGQPWRKESFGNWFRDVCREANCPGSAHGLRKAGATRA 300
Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
A+ GA+ +LMA +GW T A+ YT+ ADR RL
Sbjct: 301 AEKGASERQLMAIFGWTTGKMAQHYTRSADRARL 334