PSIBLAST alignment of GI: 254780134 and protein with PDB id: 1z1b
>gi|71042126|pdb|1Z1B|A Chain A, Crystal Structure Of A Lambda Integrase Dimer Bound To A Coc' Core Site Length = 356
>gi|71042127|pdb|1Z1B|B Chain B, Crystal Structure Of A Lambda Integrase Dimer Bound To A Coc' Core Site Length = 356
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 57/335 (17%), Positives = 106/335 (31%), Gaps = 23/335 (6%)
Query: 4 SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALT---GSTPKREY 60
LPP + R+ Y G+ L A + + G K
Sbjct: 9 RRDLPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLT 65
Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
TL + Y K + + I++ S I R D ITTK I
Sbjct: 66 ARINSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIA 125
Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
+ + + +SA +++ F+ A+ + ++ N + K K R E
Sbjct: 126 AMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNHVAATRAAKSKVRRSRLTADEY 185
Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
++ +++ S RLA E + +G R D C + + ++ KTG I +
Sbjct: 186 LKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTA 245
Query: 239 DGFMKLLAMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKAGV-----NK 284
L + ++ +++ S +F +G+
Sbjct: 246 LHIDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPP 305
Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
+ H +R SA + + G K+ A
Sbjct: 306 TFHELRSLSA-RLYEKQISDKFAQHLLGHKSDTMA 339