BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780134|ref|YP_003064547.1| phage-related integrase/recombinase [Candidatus Liberibacter asiaticus str. psy62] (348 letters) Database: nr 13,984,884 sequences; 4,792,584,752 total letters Searching..................................................done >gi|254780134|ref|YP_003064547.1| phage-related integrase/recombinase [Candidatus Liberibacter asiaticus str. psy62] gi|254039811|gb|ACT56607.1| phage-related integrase/recombinase [Candidatus Liberibacter asiaticus str. psy62] gi|317120848|gb|ADV02669.1| phage-related integrase/recombinase [Candidatus Liberibacter asiaticus] Length = 348 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 348/348 (100%), Positives = 348/348 (100%) Query: 1 MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60 MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY Sbjct: 1 MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60 Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR Sbjct: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ Sbjct: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG Sbjct: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADA 300 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADA Sbjct: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADA 300 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP Sbjct: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 >gi|240850345|ref|YP_002971738.1| phage-related integrase/recombinase [Bartonella grahamii as4aup] gi|240267468|gb|ACS51056.1| phage-related integrase/recombinase [Bartonella grahamii as4aup] Length = 347 Score = 229 bits (584), Expect = 5e-58, Method: Composition-based stats. Identities = 126/345 (36%), Positives = 188/345 (54%), Gaps = 6/345 (1%) Query: 2 TPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYP-HESTFIPAYMSALTGSTPKR-E 59 P R PP + KE TRHGKII+Y R GHG+RIR+ F+ Y SAL Sbjct: 1 MPKPR-PPHLVKEVTRHGKIIWYVRIGHGKRIRIRGTYGTQEFVDNYKSALAELQGLILP 59 Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119 + + + WL+ +Y S HW SLA ++ E ++ G+ YR+I HI Sbjct: 60 KSKTGKLVEGSFAWLLKQYFNSVHWHSLAKATKRQRELILMKVCDAIGNIPYREIKKSHI 119 Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKED 178 +GVE RK P++A FL ++ LF WA+ QE + NP L ++RP +G WT+ED Sbjct: 120 TAGVERRKEKPTAAQNFLKALNGLFNWAIDQELLENNPALGIKRPPLNNKDGFAVWTEED 179 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--TGTIITVE 236 ++++ WS GS R+ + LLY+GLR D+ R G + +++NI +KT+K T + + Sbjct: 180 VEKYYHHWSHGSHERVWIDVLLYTGLRRGDAVRIGWKDVKDNIIHLKTEKSKFQTDVFLP 239 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296 + + L + PIG ETF + K+ F F+ AG+ KSAHG+RK +AT Sbjct: 240 ILPELAETLKIGPIGNETFICGKNGNKLVKESFGNLFREACNAAGIKKSAHGLRKLAATR 299 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 +A++GAT +L A +GW + A YTK ADR RL I+ +++ Sbjct: 300 AANSGATVSQLKAIFGWTDDNMASLYTKSADRKRLAIEAIKKLQK 344 >gi|163868166|ref|YP_001609374.1| phage-related integrase/recombinase [Bartonella tribocorum CIP 105476] gi|161017821|emb|CAK01379.1| phage-related integrase/recombinase [Bartonella tribocorum CIP 105476] Length = 345 Score = 218 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 121/345 (35%), Positives = 186/345 (53%), Gaps = 6/345 (1%) Query: 2 TPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYP-HESTFIPAYMSALTGSTPK-RE 59 P R PP++ KE TRH KII+Y R GHG+RIR+ F+ Y SAL Sbjct: 1 MPKPR-PPYLLKEVTRHNKIIWYVRIGHGKRIRIRGTYGTQEFVDNYKSALAELQGIIPP 59 Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119 + + + WL+ +Y S+ W LA ++ E ++ G+ Y+ I KHI Sbjct: 60 KPKTGKLIEGSFAWLLKQYFNSSDWYCLAKATKRQKELILMKVCDSIGNIPYQAIEKKHI 119 Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKED 178 +GVE RK TP+ A FL ++ LF WA+ Q + NP + V+RP +G WT++D Sbjct: 120 VAGVERRKETPAMARNFLKALNGLFNWAIDQGLLESNPTVGVKRPALNNKDGFAVWTEDD 179 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--TGTIITVE 236 ++++ WS G+ R+ + LLY+GLR D+ R G +++++NI +KT+K T + + Sbjct: 180 VEKYYQRWSHGTHERVWIDVLLYTGLRRGDAVRIGWKNVKDNIIHLKTEKSKYQTDVFLP 239 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296 + + L + PIG ETF + QK F F+ AG+ KSAHG+RK +AT Sbjct: 240 ILPELAETLKIGPIGNETFICSKTNQKFIKESFGNAFRDACNAAGIKKSAHGLRKLAATR 299 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 +A++GAT +L A +GW A YTK ADR RL ++ +++ Sbjct: 300 AANSGATVSQLKAIFGWTEDQMASLYTKSADRKRLALEAIKKLQK 344 >gi|319405810|emb|CBI79435.1| phage-related integrase/recombinase [Bartonella sp. AR 15-3] Length = 345 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 117/345 (33%), Positives = 188/345 (54%), Gaps = 6/345 (1%) Query: 2 TPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHES-TFIPAYMSALTGSTPKR-E 59 P R PP + KE TRHGK+I+Y R GHG+R+R+ + + FI Y A+ Sbjct: 1 MPKQR-PPHLVKEITRHGKVIWYVRIGHGQRVRIYGTYGAQEFIDNYKRAIAQLQGLILP 59 Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119 + + WL+ +Y S +W SLA ++ E ++ G Y+ I KHI Sbjct: 60 KSKPGKLVEGSFAWLLKQYFNSVNWYSLAKTTQRQKELILMKVCDSVGSIPYKAINKKHI 119 Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKED 178 +GVE RK TP+SA FL ++ LF WA+ Q + NP L+++RP + +G WT+ED Sbjct: 120 IAGVERRKETPASARNFLKALNGLFTWAIEQNLLDENPTLNIKRPPLKNKDGFPAWTEED 179 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--TGTIITVE 236 ++++ W G+ R+ + +LY+GLR D+ R G + +++NI +KT+K T + + Sbjct: 180 IEKYYKQWPHGTHERVWIDVILYTGLRRGDAMRIGWKDVKDNIIHLKTEKSKFQTDVFLP 239 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296 + + L + PIG ETF +K+ F F+ A + KSAHG+RK +AT Sbjct: 240 ILPELAETLKIGPIGDETFICGKGNKKLTKESFGNLFREACNTASIKKSAHGLRKLAATR 299 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 +A++GAT +L A +GW + A YTK ADR +L +++ +++ Sbjct: 300 AANSGATVSQLKAIFGWTNDNMASLYTKSADRKKLALESIKKLQK 344 >gi|315497345|ref|YP_004086149.1| integrase family protein [Asticcacaulis excentricus CB 48] gi|315415357|gb|ADU11998.1| integrase family protein [Asticcacaulis excentricus CB 48] Length = 356 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 105/345 (30%), Positives = 176/345 (51%), Gaps = 13/345 (3%) Query: 10 FVTKERTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYINSPRKKP 68 ++ + RHG +YFR+ +++ LP P F+ AY +AL+G + + I + ++KP Sbjct: 10 YINRYTDRHGNTRHYFRRPGHKQVALPGKPGSKEFMAAYQAALSG-SEGKPRIGASKEKP 68 Query: 69 TTLKWLISEYRKSAHWGS-LAVNSRISFESYFDQIIR-------KSGDFDYRKITTKHIR 120 + L+S Y SA + + L S+ ++ +Q K+GD + H+ Sbjct: 69 GSFGALLSVYYDSAKFRNELKPQSQKAYRILLEQFRELEVTPGVKAGDCLVKDFRPAHLN 128 Query: 121 S-GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKED 178 ++ P A + +R +FK A+R E + NP VE PK + +GI W+ D Sbjct: 129 KLVIDGLADRPGQAKNMIKCLRGVFKCAIRNEMIDSNPAREVETPKAKSKDGIPAWSDAD 188 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 ++ F W G++ RLA LLY+G R SD R G QH++ ++ KT + + + Sbjct: 189 IEAFCKHWPSGTKQRLALALLLYTGQRRSDVARMGRQHVREGRIHVRQMKTDARLAIRIH 248 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATIS 297 K L + P G+ TF + + + FSIWFK +A AGV ++SAHG+RK + + Sbjct: 249 SELQKELDLVPPGQMTFMLTEWGKPFSLAGFSIWFKKQAEDAGVQDRSAHGLRKAAGRML 308 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342 A+AG TA ++MA G +++ +AE YT+ AD+ +LG + Sbjct: 309 AEAGCTAKQIMAILGHQSMTEAERYTRTADQEKLGDGAMELFEAK 353 >gi|92115952|ref|YP_575681.1| phage integrase [Nitrobacter hamburgensis X14] gi|91798846|gb|ABE61221.1| phage integrase [Nitrobacter hamburgensis X14] Length = 389 Score = 203 bits (516), Expect = 3e-50, Method: Composition-based stats. Identities = 101/346 (29%), Positives = 160/346 (46%), Gaps = 9/346 (2%) Query: 2 TPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREY 60 P PP +TK+ RHG I +Y R G ++RL F AY L G+ Sbjct: 1 MPRPN-PPRLTKDTDRHGNIRWYVRTLDGPKVRLRDEYGTPAFWQAYRDVLAGNIKPPPP 59 Query: 61 INSPRKKP---TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117 +KP +L WL S+Y SA + L +R + D I G+ Y+ + K Sbjct: 60 STRIERKPFDKASLAWLCSQYYTSAEYKQLNERTRYVRRATLDHICAADGEKPYKLLLPK 119 Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 HIR+ ++R P SA + ++R +F +A+ +YVA+NP +V K K +G W+ E Sbjct: 120 HIRARRDARADRPESANGMIKALRQVFAFAIENDYVALNPAQAVPYLKAKGDGHHSWSLE 179 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----I 233 ++++F+ G+ RLA LLY+G R SD G ++ K + Sbjct: 180 EIEKFEKKHPIGTMARLALALLLYTGQRRSDVIVLGPALVREGWLHFTQFKGREHKPITL 239 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFS 293 + + +++ T GK+T+ +N + A F WF + A V AHG+RK + Sbjct: 240 DIPIIPELQRVIDATACGKDTYLLNGLGRPFTAAGFGNWFHDRCKDAKVPGRAHGLRKAA 299 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 A+ A+ G++ HE+MA G T + YTK A + L R+ Sbjct: 300 ASRLAELGSSEHEIMAITGHTTSKEVMRYTKAARQKVLAAAAMARL 345 >gi|85716638|ref|ZP_01047608.1| Integrase /recombinase [Nitrobacter sp. Nb-311A] gi|85696639|gb|EAQ34527.1| Integrase /recombinase [Nitrobacter sp. Nb-311A] Length = 371 Score = 199 bits (506), Expect = 5e-49, Method: Composition-based stats. Identities = 118/351 (33%), Positives = 181/351 (51%), Gaps = 11/351 (3%) Query: 5 LRLPPFVTKERTRHGKIIYYFRKGHGRRIRLP-YPHESTFIPAYMSALTGSTPKREYINS 63 R PP++ ERTRHG ++Y R+ HG RIRL + F Y +AL + + S Sbjct: 3 KRRPPYLHSERTRHGARVWYVRRHHGGRIRLRADYGSAAFWQEYRAALDAA---PALVAS 59 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 K TLKW + YR S+ W +L++ +R E+ F ++I G +I IR G Sbjct: 60 AIGKSGTLKWALDRYRASSAWATLSLATRRQRENIFRRVIETGGKTPLTEIDDDVIRDGR 119 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP--KRKTEGIRPWTKEDMQQ 181 E R TP A F+ +MR W V ++ + NP V+ +G WT+ ++ + Sbjct: 120 ERRAATPHQANSFIKAMRAFCAWCVEEKLMTKNPTSGVKLLTGPNDADGFHTWTQAELDR 179 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-----ITVE 236 F++ W G++ RLAF+ LLY+GLR D+ R G QH+++ + SI+T+K + + Sbjct: 180 FEARWKVGTRERLAFDVLLYTGLRRGDAVRVGRQHVKDGVISIRTEKHARGKAGELVAIP 239 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296 + LA TP G+ F IN Q F WF+ +A SAHG+RK AT Sbjct: 240 ILAPLAASLAATPTGELEFLINERGQPWRKESFGNWFRDVCREANCPGSAHGLRKAGATR 299 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347 +A+ GA+ +LMA +GW T A+ YT+ ADR RL ++ + V +++ Sbjct: 300 AAEKGASERQLMAIFGWTTGKMAQHYTRSADRARLARDAAQLLLPVQATNE 350 >gi|222107069|ref|YP_002547860.1| Integrase [Agrobacterium vitis S4] gi|221738248|gb|ACM39144.1| Integrase [Agrobacterium vitis S4] Length = 344 Score = 198 bits (504), Expect = 8e-49, Method: Composition-based stats. Identities = 86/339 (25%), Positives = 161/339 (47%), Gaps = 6/339 (1%) Query: 6 RLPPFVTKERTRHGKIIYYFRKGHGRRIRL-PYPHESTFIPAYMSALTGSTPKREYINSP 64 R P + RHGKI +Y+R+ L P F+ +Y A+ G + + Sbjct: 3 RPPKYCQGFEDRHGKIRWYYRRKGFPIKPLSGLPWSPEFMASYEKAMAGE---KIEVGKS 59 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 + P T+ L+ Y K++ + L+ +++ ++ ++ + G + ++++ + Sbjct: 60 KSAPGTVSALVVSYYKTSDFQRLSESTKTTYRGIIERFREEHGAKRVHHMQAQNVKKIIG 119 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + TP++A L + +L AV ++ +P V++ + K+EG W + ++QF + Sbjct: 120 EKAATPAAANNLLRIIHILMLHAVDLQWRRDDPTKDVKKIRHKSEGFLTWEEHHIEQFTA 179 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 + G++ LA LLY+G R SD R G QH+++ SI QKTG ++ + F + Sbjct: 180 YHKPGTRAHLALSLLLYTGQRRSDVVRMGRQHVRDGWISIVQQKTGQLVEIPFHAAFKDV 239 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGA 302 L P+ TF + F+ WF+ +AG+ S HG+RK + A+AG Sbjct: 240 LNALPLKNMTFLTTAQGKPFTPAGFTNWFRDMTKEAGLPDKLSPHGLRKAACRRLAEAGC 299 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 T H++MA G +++D+ YT A R L + + + Sbjct: 300 TPHQIMAISGHQSLDEVTRYTVAASRRELATQAAPHLQG 338 >gi|307942454|ref|ZP_07657805.1| integrase family protein [Roseibium sp. TrichSKD4] gi|307774740|gb|EFO33950.1| integrase family protein [Roseibium sp. TrichSKD4] Length = 356 Score = 198 bits (502), Expect = 1e-48, Method: Composition-based stats. Identities = 117/350 (33%), Positives = 181/350 (51%), Gaps = 12/350 (3%) Query: 2 TPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHEST----FIPAYMSALTGSTPK 57 P RLP V E++RHG++ Y+FR GHG RIRLP + + F+ AY SAL G+ P Sbjct: 1 MPKSRLP-HVVVEKSRHGRVKYFFRIGHGPRIRLPDDYSTAQASDFMQAYRSALAGTPPP 59 Query: 58 REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117 R TL WL +Y++SA + SL+ ++ + + I+ KSG R IT + Sbjct: 60 LPK-ARSRHAQNTLGWLFDQYQQSAKFKSLSEGTQRARANLIKGIVSKSGKAQLRDITER 118 Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVR----QEYVAINPCLSVERPKRKTEGIRP 173 +R G E R TP +A FL +M+ F W + + +P +V++ KTEG Sbjct: 119 AVRQGRERRSATPEAANNFLKTMKSAFAWGIDSGLLDGIIETDPTANVKKITTKTEGFHT 178 Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233 WT ++++ ++S G+ RLA + L+Y+GLR D + G QH+++ + + KT K G + Sbjct: 179 WTVDEIEAYESTHDIGTTARLALDLLIYTGLRRGDVVKVGRQHVKDGVLNYKTGKNGEWV 238 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNA-TQFSIWFKAKATKAGVNK-SAHGVRK 291 + + + +P TF + ++ F WF + +AGV K AHG+RK Sbjct: 239 HLPILPALQNSIDASPTNDLTFLQTEKGKPFSSAASFGNWFAKRCLEAGVEKGRAHGLRK 298 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 A ++A+ GAT +LMA +GW T D A YTK A R +L + Sbjct: 299 AGAVLAAERGATTSQLMALFGWTTEDMATLYTKRASRSKLSATAIDLLDR 348 >gi|159043537|ref|YP_001532331.1| integrase family protein [Dinoroseobacter shibae DFL 12] gi|157911297|gb|ABV92730.1| integrase family protein [Dinoroseobacter shibae DFL 12] Length = 370 Score = 193 bits (491), Expect = 3e-47, Method: Composition-based stats. Identities = 99/340 (29%), Positives = 166/340 (48%), Gaps = 7/340 (2%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYIN-SPRK 66 V ++ RHG + Y R+ ++RL P F+ Y +A+ G+TP+ + R Sbjct: 16 KHVIEDTDRHGNVRIYLRRPGHLKVRLRSQPGTEDFLAEYRAAMMGATPRAPTVPLDRRG 75 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 + KWL +Y SA + L+ ++ D+I KSG Y + +H+R + Sbjct: 76 SKGSFKWLCEQYYVSAEYQRLSGRTKYVRRGILDRICEKSGSKPYALMEPRHVRRMRDEM 135 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 P +A F+ ++R ++ +AV E NP V K K +G WT E+++QF+ Sbjct: 136 ADRPEAANGFVKALRQVYSFAVEYELAQRNPARDVPYLKAKGDGFHSWTMEEVRQFEEHH 195 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----ITVELPDGFM 242 GS+PRLA +LY+G R SD R G QH+++ ++ K +++ + Sbjct: 196 PIGSKPRLALALMLYTGQRRSDIVRLGPQHIKDGWITLTQAKNRDRKPVTLSIPVLPELK 255 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301 +L TP G F + + + F WF+ + +AG+ SAHG+RK A ++A+ G Sbjct: 256 AVLDATPTGNLAFLVTAFGKPFTSNGFGNWFRKQCDEAGLKHCSAHGLRKAGAALAAENG 315 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 AT +LMA +GW T+ +A YT+ A + L + +S Sbjct: 316 ATERQLMAIFGWTTMKEASRYTRAARQRVLAASGMKLLSR 355 >gi|89055356|ref|YP_510807.1| phage integrase [Jannaschia sp. CCS1] gi|88864905|gb|ABD55782.1| phage integrase [Jannaschia sp. CCS1] Length = 370 Score = 193 bits (490), Expect = 3e-47, Method: Composition-based stats. Identities = 98/340 (28%), Positives = 164/340 (48%), Gaps = 7/340 (2%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYINSPRKK 67 V ++ RHG + Y R+ ++RL P F+ Y A+ G+TP+ R+ Sbjct: 16 KHVIEDTDRHGNVRLYLRRPGHLKVRLRSQPGTEDFLAEYRVAMMGATPRAPAGPLERRG 75 Query: 68 -PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 + KWL +Y SA + L+ ++ D+I K+G Y + +H+R + Sbjct: 76 SKGSFKWLCEQYYVSAEYQRLSGRTKYVRRGILDRICEKNGSKPYALMEPRHVRRMRDEM 135 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 P +A F+ ++R ++ +AV E NP V K K +G WT E+++QF+ Sbjct: 136 ADRPEAANGFVKALRQVYAFAVEYELAQRNPARDVPYLKAKGDGFHSWTMEEVRQFEDHH 195 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----ITVELPDGFM 242 GS+PRLA +LY+G R SD R G QH+++ ++ K +++ + Sbjct: 196 PIGSKPRLALALMLYTGQRRSDIVRLGPQHIKDGWITMTQAKNRDRKPVTLSIPVLLELK 255 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301 +L TP G F + + + F WF+ + AG+ SAHG+RK A ++A+ G Sbjct: 256 AVLDATPTGNLAFLVTTFGKPFTSNGFGNWFRKQCDVAGLKHCSAHGLRKAGAALAAENG 315 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 AT +LMA +GW T+ +A YT+ A + L + +S Sbjct: 316 ATERQLMAIFGWSTMKEASRYTRAARQKVLAASGMKLLSR 355 >gi|300021643|ref|YP_003754254.1| integrase family protein [Hyphomicrobium denitrificans ATCC 51888] gi|299523464|gb|ADJ21933.1| integrase family protein [Hyphomicrobium denitrificans ATCC 51888] Length = 716 Score = 192 bits (488), Expect = 7e-47, Method: Composition-based stats. Identities = 88/351 (25%), Positives = 161/351 (45%), Gaps = 18/351 (5%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLP-YPHESTFIPAYMSALTGSTP---KREYINSP 64 ++ ++ RHG + YFR R+IRL P F Y S + K S Sbjct: 12 RYLVEDTDRHGNVRIYFRYPGYRKIRLRERPTSPEFAERYSSLIEQFATGCYKEAEKTSV 71 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII---------RKSGDFDYRKIT 115 P TL WL++ +R S + +L +++ + + ++ +F +I Sbjct: 72 SAVPGTLGWLVTAFRASKDFSNLDPSTQRTRARVLESMLNEPIFQEAAETFRNFPLDRIK 131 Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 + + +K P +A + ++R +FKWA +++ NP +S+ +P+ + G W Sbjct: 132 LSDLEVLRDRKKALPGAATDRVKALRPMFKWATSKKHCVANPAISLTKPRLISNGHHTWL 191 Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--- 232 ++++ F+ G++ LA +LY+G R SD+ + G QH Q + K Sbjct: 192 PDEIEAFQRRHPLGTKAHLALSIMLYTGARRSDAVQLGRQHEQGDSLRWTAHKNRNRYPT 251 Query: 233 -ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVR 290 I + + + P G + + + F WF + +AG+ SAHG+R Sbjct: 252 IIHIPMLQPLAAAIQAGPTGDMVYLLTEYGKPFTIAGFGNWFHDRCIEAGLPQCSAHGLR 311 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 K +T +A+AGATAH+LMA +GW+++ +AE YT+ A+R ++ + Sbjct: 312 KAGSTRAAEAGATAHQLMAMFGWRSLAEAEIYTRAAERKKMAALGMAFLEK 362 >gi|218528999|ref|YP_002419815.1| integrase family protein [Methylobacterium chloromethanicum CM4] gi|218521302|gb|ACK81887.1| integrase family protein [Methylobacterium chloromethanicum CM4] Length = 367 Score = 191 bits (486), Expect = 1e-46, Method: Composition-based stats. Identities = 92/354 (25%), Positives = 158/354 (44%), Gaps = 13/354 (3%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYINSPR 65 LP +V + RH + YYFR+ ++RL P F+ Y L G P+R+ ++P Sbjct: 10 LPEYVVSDTDRHDNVRYYFRRRPAPKVRLEGIPGSEAFMNKYYDCLDGRIPERKSRSAP- 68 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 P + L Y S + SL V++R D+I G + +H+R+ Sbjct: 69 AAPGSFAALRLAYLGSPEFKSLDVSTRAWQRRALDEISEAHGTKRVAMMQARHVRTLRNG 128 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 ++ TP++A L +++ LFKWA + +P +V+ K +G PW+ +++ +++ Sbjct: 129 KRETPAAANTMLKALKALFKWANENGRASSDPTRNVDFLKYAKKGFHPWSPSEVEAYEAA 188 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----ITVELPDGF 241 G+ RLA E LLY+ R D R G +L F K I + + Sbjct: 189 HLVGTTARLALELLLYTAGRREDVVRFGPHNLAAGRFRFVQGKNEDRAPVLIDIPVHPDL 248 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300 + +A F + + + F FK +AG+ SAHG RK +A A Sbjct: 249 AEAIAAAQPSGAIFILTHYGRPFTPNGFGNRFKKWCIQAGLPHCSAHGCRKAAAARLATR 308 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI------SSVVDSDDP 348 GATAH++M+ G +++ + E YT+ A R ++ + S + ++ P Sbjct: 309 GATAHQIMSVTGHQSLAEVERYTRSALRAQMADTAMALLPDRRSAGSTIPANRP 362 >gi|163867673|ref|YP_001608874.1| phage-related integrase/recombinase [Bartonella tribocorum CIP 105476] gi|161017321|emb|CAK00879.1| phage-related integrase/recombinase [Bartonella tribocorum CIP 105476] Length = 345 Score = 191 bits (486), Expect = 1e-46, Method: Composition-based stats. Identities = 114/342 (33%), Positives = 178/342 (52%), Gaps = 5/342 (1%) Query: 5 LRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYP-HESTFIPAYMSAL-TGSTPKREYIN 62 R PP++ ERTRHGKII+Y R GHG R R+ F+ Y AL + Sbjct: 3 KRRPPYLVCERTRHGKIIWYVRIGHGPRFRIEGTYGTQEFVDNYTLALKQAQNGTSKKRK 62 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122 R + WL+ +Y +S W + + +++ + + + G+ Y+ I HI Sbjct: 63 QTRLVEGSFDWLLHQYLRSIQWHNQSESTKKVKYRILNNVSKHIGERAYKSIGKHHILDA 122 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDMQQ 181 V+ R+ TP++A FLTS+ LF WAV + NP +++ PK EG PW +ED+++ Sbjct: 123 VDRRRATPAAAKHFLTSLNGLFNWAVDNALLNRNPAFNIKPPKSFNAEGFTPWLEEDVEK 182 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPD 239 + WS + R+ + LLY+GLR D+ R G + +++NI +KT+ + T + + + Sbjct: 183 YYHHWSVDTHERVWVDVLLYTGLRRGDAVRIGWKDVKDNIIHLKTEKSQFKTDVFLPILP 242 Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISAD 299 K L P+G ETF K+ F F+ AG+ KSAHG+RK +AT +A+ Sbjct: 243 ELAKTLEAGPVGDETFICGKGGNKLVKESFGNLFREACNAAGIKKSAHGLRKLAATRAAN 302 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 AGAT ++ A +GW A YTK ADR RL I+ +++ Sbjct: 303 AGATVSQMKALFGWSEDKMASLYTKTADRKRLAIEAIKKLQK 344 >gi|319409101|emb|CBI82745.1| phage-related integrase/recombinase [Bartonella schoenbuchensis R1] Length = 347 Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats. Identities = 122/345 (35%), Positives = 180/345 (52%), Gaps = 6/345 (1%) Query: 2 TPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYP-HESTFIPAYMSAL-TGSTPKRE 59 P R PP + KE TRHGK I+Y R GHG+R R+ F+ Y AL Sbjct: 1 MPKPR-PPHLIKEITRHGKTIWYVRIGHGQRYRVYGTYGTQEFVDNYTLALKEAQNGLPR 59 Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119 I R + WL+ +Y +S W + A +++ + + I + G Y+ I +HI Sbjct: 60 QIKRTRLMEGSFDWLMHQYLQSMQWHNQAESTKKVKQRILNNISQHIGTCSYKSIEKQHI 119 Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKED 178 VE R+ TP++A FLT++ LF WAV + NP +++ PK TEG PW +ED Sbjct: 120 LDAVERRRETPAAARHFLTALNGLFNWAVDNSLLHRNPAFNIKPPKSFNTEGFSPWLEED 179 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--TGTIITVE 236 + ++ W G+ R+ + LLY+GLR D R G + + +NI +KT+K T + + Sbjct: 180 IDKYHQRWPLGTHERVWIDVLLYTGLRRGDVVRVGWKDVTDNIIHLKTEKSKFQTDVFLP 239 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296 + K L PIG ETF + +K+ F F+ AG+ KSAHG+RK +AT Sbjct: 240 ILPELAKTLEAGPIGNETFICGKEGKKLTKESFGNLFRKACNAAGIKKSAHGLRKLAATR 299 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 +A+AGAT +L A +GW D A YTK ADR RL I+ +++ Sbjct: 300 AANAGATVSQLKAIFGWTEDDMASLYTKTADRKRLAIEAIKKLQK 344 >gi|319408877|emb|CBI82534.1| phage-related integrase/recombinase [Bartonella schoenbuchensis R1] Length = 347 Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats. Identities = 123/345 (35%), Positives = 180/345 (52%), Gaps = 6/345 (1%) Query: 2 TPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRL-PYPHESTFIPAYMSALTGSTP-KRE 59 P R PP + KE TRHGK I+Y R GHG+R R+ F+ Y AL+ K Sbjct: 1 MPKPR-PPHLVKEITRHGKTIWYVRIGHGQRRRVHGVYGTQEFVDDYKKALSELQGYKLP 59 Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119 + + WL+ +Y S W +LA ++ E ++ GD Y+ I HI Sbjct: 60 KSKPGKLVEGSFIWLLKQYFNSLTWHNLAHATKRQKELILMKVSDAIGDIPYKAIKKSHI 119 Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKED 178 +GVE RK TP++A FL ++ LFKWA+ Q + NP V+RP + +G W +ED Sbjct: 120 IAGVERRKETPANARNFLKAVNSLFKWAIEQGLLEDNPAAGVKRPSLKNKDGFPAWIEED 179 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--TGTIITVE 236 + ++ W G+ R+ + LLY+GLR D R G + + +N+ +KT+K T + + Sbjct: 180 INKYYQQWPLGTHERVWVDVLLYTGLRRGDVVRIGWKDVTDNVIHLKTEKSKFQTDVFLP 239 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296 + K L P+G ETF +K+ F FK +AGV KSAHG+RK +AT Sbjct: 240 ILPELAKTLETGPVGNETFICGKGGKKLTKETFGNLFKNACNEAGVKKSAHGLRKLAATR 299 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 +A+AGAT +L A +GW D A YTK ADR RL I+ +++ Sbjct: 300 AANAGATVAQLKAIFGWTEDDMASLYTKTADRKRLAIEAIKKLQK 344 >gi|49475466|ref|YP_033507.1| integrase /recombinase [Bartonella henselae str. Houston-1] gi|49238272|emb|CAF27486.1| Integrase /recombinase [Bartonella henselae str. Houston-1] Length = 345 Score = 191 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 114/342 (33%), Positives = 185/342 (54%), Gaps = 5/342 (1%) Query: 5 LRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYP-HESTFIPAYMSAL-TGSTPKREYIN 62 R PP + KE TRHGK+++Y R GHG R R+ F+ +Y A+ + + Sbjct: 3 KRRPPHLVKETTRHGKVVWYVRIGHGPRYRIEGTYGTQEFVDSYTLAIKQAQNGTPKRMT 62 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122 R + WL+ +Y +S W + + +++ + + + G+ Y+ I +HI Sbjct: 63 QTRLTEGSFDWLLHQYLQSMQWHNQSESTKKVKYRILNNVSKHIGNHAYKSIEKRHILDA 122 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR-KTEGIRPWTKEDMQQ 181 V+ R+ TP++A FLTS+ LF WAV + NP L+++ PK +EG++PW +ED+ + Sbjct: 123 VDRRRATPAAAKHFLTSLNGLFNWAVDNALLNRNPALNIKAPKSLNSEGLQPWLEEDIDK 182 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPD 239 + WS GS R+ + LLY+GLR D+ R G + +++NI +KT+ + T + + + Sbjct: 183 YYHHWSHGSHERVWIDVLLYTGLRRGDAVRIGWKDVKDNIIHLKTEKSQFKTDVFLPILP 242 Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISAD 299 + L + PIG ETF K+ F F+ AG+ KSAHG+RK +AT +A+ Sbjct: 243 ELTETLQIGPIGDETFICGKSGNKLVKESFGNLFREACNAAGIKKSAHGLRKLAATRAAN 302 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 AGAT ++ A +GW A YTK ADR RL I+ +++ Sbjct: 303 AGATVSQMKALFGWTEDKMASLYTKTADRKRLAIEAIKKLQK 344 >gi|319408665|emb|CBI82320.1| phage-related integrase/recombinase [Bartonella schoenbuchensis R1] Length = 347 Score = 191 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 121/345 (35%), Positives = 179/345 (51%), Gaps = 6/345 (1%) Query: 2 TPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRL-PYPHESTFIPAYMSALTGSTP-KRE 59 P R PP + KE TRHGK I+Y R HG R R+ F+ Y AL+ Sbjct: 1 MPKQR-PPHLVKEITRHGKTIWYVRISHGPRRRVHGVYGTQEFVDDYKKALSELQGYTLP 59 Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119 S + + WL+ +Y S W L+ ++ E ++ GD Y+ I HI Sbjct: 60 KSKSDKFVEGSFIWLLKQYFDSVTWHELSHVTKRQKELILMKVSDAIGDIPYKAIKKDHI 119 Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKED 178 +GVE RK TP++A FL ++ LFKWA+ Q + NP V+RP + EG WT+ED Sbjct: 120 VAGVERRKETPATARNFLKAVNGLFKWAIEQGLLEDNPAAGVKRPSLKNKEGFPAWTEED 179 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--TGTIITVE 236 + ++ W G+ R+ + LLY+GLR D R G + + +NI +KT+K T + + Sbjct: 180 INKYYQQWPLGTHERVWLDVLLYTGLRRGDVVRIGWKDVTDNIIHLKTEKSKFQTDVFLP 239 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296 + K L PIG ETF +K+ F F+ +AG+ KSAHG+RK +AT Sbjct: 240 ILPELTKTLETGPIGDETFICGKGGKKLTKETFGNLFRDACNEAGIKKSAHGLRKLAATR 299 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 +A+AGAT +L A +GW + A YTK ADR RL +++ +++ Sbjct: 300 AANAGATVSQLKAIFGWTDDEMASLYTKTADRKRLALESIKKLQK 344 >gi|240850538|ref|YP_002971937.1| phage-related integrase/recombinase [Bartonella grahamii as4aup] gi|240267661|gb|ACS51249.1| phage-related integrase/recombinase [Bartonella grahamii as4aup] Length = 345 Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats. Identities = 113/342 (33%), Positives = 182/342 (53%), Gaps = 5/342 (1%) Query: 5 LRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYP-HESTFIPAYMSALTGSTPKREYINS 63 R PP + +ERTRHGK+I+Y R GHG R R+ F+ Y A+ + Sbjct: 3 KRRPPHLVRERTRHGKVIWYVRIGHGPRFRIEGTYGTQEFVDNYTLAIKQAQNGSSKTKR 62 Query: 64 PRK-KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122 + + WL+ +Y +S W + + +++ + + + GD Y+ I +HI Sbjct: 63 RTRLTEGSFDWLLHQYLQSMQWHNQSESTKKVKYRILNNVSKHIGDRAYKSINKQHILEA 122 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR-KTEGIRPWTKEDMQQ 181 V+ R+ TP++A FLTS+ LF WAV + NP +++ PK +EG+ PW +ED+ + Sbjct: 123 VDRRRETPAAAKHFLTSLNGLFNWAVDNALLNRNPAFNIKAPKSLNSEGLLPWREEDIDK 182 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPD 239 + WS G+ R+ + LLY+GLR D+ R G + +++NI +KT+ + T + + + Sbjct: 183 YYHRWSHGTHERVWIDVLLYTGLRRGDAVRIGWKDVKDNIIYLKTEKSQFKTDVFLPILP 242 Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISAD 299 + L + PIG ETF K+ F F+ AG+ KSAHG+RK +AT +A+ Sbjct: 243 ELEETLKIGPIGNETFICGKGGNKLVKESFGNLFREACNAAGIKKSAHGLRKLAATRAAN 302 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 AGAT ++ A +GW A YTK ADR RL I+ +++ Sbjct: 303 AGATVSQMKALFGWTEDKMASLYTKTADRKRLAIEAIKKLQK 344 >gi|146340241|ref|YP_001205289.1| putative phage integrase/recombinase [Bradyrhizobium sp. ORS278] gi|146193047|emb|CAL77058.1| Putative Phage Integrase/recombinase [Bradyrhizobium sp. ORS278] Length = 345 Score = 189 bits (480), Expect = 6e-46, Method: Composition-based stats. Identities = 107/345 (31%), Positives = 173/345 (50%), Gaps = 8/345 (2%) Query: 2 TPSLRLPPFVTKERTRHGKIIYYFR-KGHGRRIRLPY-PHESTFIPAYMSALTGSTPKRE 59 P R PP + + +RHGK+ ++ + + + R+ + F+ AY +A+TG K Sbjct: 4 MPRPR-PPHLQRGVSRHGKVYWFDQMRRGAPKTRIRGEYGSAEFMAAYDAAVTGGAAKP- 61 Query: 60 YINSPRKKPTTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITTKH 118 + TL+W YR+S W L+ +R E+ +++ + I Sbjct: 62 -TPEIKAPKGTLEWAWMLYRQSGAWQSGLSQATRRQRENIMKHVLKTAASTPLSDIDAAA 120 Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-IRPWTKE 177 I G++ R TPS A FL +M F W R + V+ NPC E PKR G + W+ + Sbjct: 121 IADGIDRRAKTPSQAKNFLQTMNQFFAWLKRAKIVSENPCDGAELPKRPKTGGFKKWSLD 180 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237 D++ ++ W G++ R+ + +Y+GLR D+ G QH++N + S++T+K G + + L Sbjct: 181 DVELYEKRWPIGTRERVMLDDYMYTGLRRGDAAVVGKQHVRNGVISLQTEKAGQWVHIPL 240 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATI 296 D + L P+G + + FK AGV +KSAHG+RK +AT Sbjct: 241 LDVLKRTLEAGPVGDLAWNATKSGRPFAKESLGNAFKDACVAAGVRDKSAHGLRKAAATR 300 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 +AD GATAHELMA + W + +AE YT+ ADR RL + ++ Sbjct: 301 AADNGATAHELMAIFRWVDIKEAELYTRAADRKRLAAQAMGKLEK 345 >gi|319406688|emb|CBI80325.1| phage-related integrase/recombinase [Bartonella sp. 1-1C] Length = 349 Score = 188 bits (477), Expect = 1e-45, Method: Composition-based stats. Identities = 118/347 (34%), Positives = 184/347 (53%), Gaps = 7/347 (2%) Query: 1 MT-PSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRL-PYPHESTFIPAYMSALTGSTPK- 57 MT P R PP + K+ T+HGKI++Y R GHG+R R+ FI Y S+L Sbjct: 1 MTMPKPR-PPHLVKQITQHGKIVWYVRIGHGQRRRVHGTYGTQEFIDNYKSSLAELHGII 59 Query: 58 REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117 + + WL+ +Y S +W +LA ++ E ++ G+ YR+I Sbjct: 60 PPKPKPGKLIEGSFAWLLKQYFNSINWHNLAKGTKRQRELILMKVYDTIGNIPYREIKKA 119 Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTK 176 HI +GVE RK PS+A FL ++ LF WA+ Q + NP + V++P +G WT+ Sbjct: 120 HIIAGVERRKDKPSTAQNFLKALNGLFNWAIEQGLLENNPTVGVKKPALNNKDGFAAWTE 179 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--TGTIIT 234 ED++++ WS G+ R+ LLY+GLR D+ R G + ++NI +KT+K T + Sbjct: 180 EDVEKYYQQWSVGTYERVWINVLLYTGLRRGDAVRIGWKDTKDNIIHLKTEKSKFQTDVF 239 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSA 294 + + + L + P+G+ETF K+ F F+ AG+ KSAHG+RK +A Sbjct: 240 LPILPELAETLKIGPVGEETFICGKSGNKLAKESFGNLFREACNAAGIKKSAHGLRKLAA 299 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 T +A+AGAT +L A +GW A YTK ADR +L ++ +++ Sbjct: 300 TRAANAGATVSQLKAIFGWTEDKMASLYTKSADRKKLALEAIKKLQK 346 >gi|218532644|ref|YP_002423460.1| integrase family protein [Methylobacterium chloromethanicum CM4] gi|218524947|gb|ACK85532.1| integrase family protein [Methylobacterium chloromethanicum CM4] Length = 405 Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats. Identities = 96/349 (27%), Positives = 154/349 (44%), Gaps = 18/349 (5%) Query: 6 RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYINSP 64 RLP F ++ RHG + Y R+ ++RLP P F+ AY +AL G++ + Sbjct: 4 RLPRFCVEDVDRHGNVRVYLRRKDWPKVRLPGVPWTEPFMEAYRAALNGTSEDKPRDRYA 63 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK---------SGDFDYRKIT 115 P T KWL +Y SA + +L ++ + + + DF ++T Sbjct: 64 TL-PDTWKWLCQQYVTSARFKTLDPVTQRRRRALLEATYDEPTKPGAKTVFADFPLARLT 122 Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKW--AVRQEYVAINPCLSVERPKRKTEGIRP 173 IR + + P A + ++R FKW + NP V +EG Sbjct: 123 PAAIRILRDRKADVPDGANNTVKAIRATFKWAVHPEVALASHNPARDVGYIATASEGFHT 182 Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233 W+ +++++F + GS+ LA LL++G R SD+ G QHLQ K Sbjct: 183 WSVDEVKRFVARHPLGSRAYLALCLLLFAGGRRSDAVLFGRQHLQGAWLRYTQHKGRNAK 242 Query: 234 TVELPDGF----MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG-VNKSAHG 288 + L + P F + + + F WFK + +AG ++ SAHG Sbjct: 243 PMTLEVPVLPALRAAIEACPSQNLAFLVTERGKPFTSNGFGNWFKDRCREAGLLHCSAHG 302 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 +RK AT++A+ GAT +LMA +GW+T AE YT+ A++ RL Sbjct: 303 LRKAGATLAAENGATERQLMAMFGWRTSKMAEHYTRKAEQKRLAGGAMH 351 >gi|319408072|emb|CBI81725.1| phage-related integrase/recombinase [Bartonella schoenbuchensis R1] Length = 347 Score = 187 bits (474), Expect = 3e-45, Method: Composition-based stats. Identities = 121/345 (35%), Positives = 179/345 (51%), Gaps = 6/345 (1%) Query: 2 TPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRL-PYPHESTFIPAYMSALTGSTP-KRE 59 P R PP + KE TRHGK I+Y R GHG+R R+ F+ Y AL+ K Sbjct: 1 MPKPR-PPHLVKEITRHGKTIWYVRIGHGQRRRVHGVYGTQEFVDDYKKALSELQGYKLP 59 Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119 + + WL+ +Y S W +LA ++ E ++ GD Y+ I HI Sbjct: 60 KSKPGKLVEGSFIWLLKQYFNSLTWHNLAHATKRQKELILMKVSDAIGDIPYKAIKKSHI 119 Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKED 178 +GVE RK TP++A FL ++ LFKWA+ Q + NP V+RP + +G W +ED Sbjct: 120 IAGVERRKETPANARNFLKAVNSLFKWAIEQGLLEDNPAAGVKRPSLKNKDGFPAWIEED 179 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--TGTIITVE 236 + ++ W G+ R+ + LLY+GLR D R G + + +N+ +KT+K T + + Sbjct: 180 INKYYQQWPLGTHERVWVDVLLYTGLRRGDVVRIGWKDVTDNVIHLKTEKSKFQTDVFLP 239 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296 + K L PIG ETF +K+ F F+ +AGV KSAHG+RK +AT Sbjct: 240 ILPELTKTLETGPIGDETFICGKGGKKLTKEAFGNLFRDACNEAGVKKSAHGLRKLAATR 299 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 +A+AGAT +L A +GW A YTK ADR RL +++ ++ Sbjct: 300 AANAGATVAQLKAIFGWTEDRMASLYTKTADRKRLALESIEKLQK 344 >gi|58040908|ref|YP_192872.1| Phage related integrase [Gluconobacter oxydans 621H] gi|58003322|gb|AAW62216.1| Phage related integrase [Gluconobacter oxydans 621H] Length = 332 Score = 187 bits (474), Expect = 3e-45, Method: Composition-based stats. Identities = 93/327 (28%), Positives = 154/327 (47%), Gaps = 6/327 (1%) Query: 22 IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS 81 YFR R LP + F PAY +A+ + P + T L ++ KS Sbjct: 2 RVYFRHPRLPRQVLPPVDDPAFWPAYHAAIA---QIPKDEPRPIRGTGTFARLCEDWLKS 58 Query: 82 AHWGSLAVNSRISFESY-FDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140 + SL ++++ + + F KHIR+ + P+S ++L Sbjct: 59 NSFLSLKPSTQVGHRNIVLRMMREDFATFHVSDFEPKHIRAIINRFSDRPASGNRWLRIF 118 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200 +LF+ A+ Q+ + ++P V R K + EG RPWT+ ++ QF++ W GS+ R AF LL Sbjct: 119 GILFRLAIEQDLIQVDPARDVRRLKERAEGARPWTEVEVAQFQAHWPLGSRARTAFALLL 178 Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND 260 Y+G R SD + G +++ + ++ QKTGT + V + LA T K + Sbjct: 179 YTGQRRSDVVKIGPACIKDGMIAVTQQKTGTSLMVPILKDLALALAATLGVKAYYLEVVP 238 Query: 261 KQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 +K ++ K AG+ SAHG+RK +A A+AG T H++ A G KT+ + Sbjct: 239 GRKPSSDSLGNLMKDWTLAAGLPSDLSAHGLRKTAARRLAEAGCTTHQIAAITGHKTLAE 298 Query: 319 AETYTKGADRIRLGIKNSRRISSVVDS 345 E YT+ D+ RL + + +V + Sbjct: 299 VERYTRSVDQKRLAKQAVALLEAVKPN 325 >gi|254503745|ref|ZP_05115896.1| site-specific recombinase, phage integrase family protein [Labrenzia alexandrii DFL-11] gi|222439816|gb|EEE46495.1| site-specific recombinase, phage integrase family protein [Labrenzia alexandrii DFL-11] Length = 347 Score = 186 bits (473), Expect = 3e-45, Method: Composition-based stats. Identities = 116/350 (33%), Positives = 183/350 (52%), Gaps = 12/350 (3%) Query: 2 TPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHEST----FIPAYMSALTGSTPK 57 P RLP + +E++RHG++ ++FR G G RIRLP ++ F+ AY +ALTGS Sbjct: 1 MPKRRLP-HLRREKSRHGRVKWFFRLGDGPRIRLPDDYDLDPASGFMQAYQAALTGSD-- 57 Query: 58 REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117 R TL WL+ +Y +SA + +LA +R S+ I KSG IT + Sbjct: 58 VPKKPRSRYPQNTLGWLLDQYEQSAKFAALAKATRQSYGYQIKAIREKSGSVRLIDITER 117 Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVR----QEYVAINPCLSVERPKRKTEGIRP 173 IR E+R TP++A FL M+V F W + + + +P V+R KTEG Sbjct: 118 SIRRAREARAATPNAANAFLKVMKVAFAWGMESGLLDDVIDRDPAKEVKRIDIKTEGHHT 177 Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233 WT E+++++++ W G+ RLA + L +GLR D + G QH++ ++ KTG I Sbjct: 178 WTVEEIERYEARWPLGTMERLALDLLACTGLRREDVYQIGRQHIKGGEIHVRASKTGGWI 237 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKM-NATQFSIWFKAKATKAGVNKSAHGVRKF 292 + + + + T G+ T +N Q NA F WF +A V AHG+RK Sbjct: 238 YLPVLPALQESIDATKTGELTLLLNTKGQPHLNAKAFGKWFGKACERAEVPGRAHGMRKA 297 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342 +AT+ A+ GAT H++MA +GW + A YT+ A+R ++ +++ + Sbjct: 298 AATLVAERGATVHQMMAIFGWDSERMAIHYTRKANRKKISLEHGELLDRK 347 >gi|146340556|ref|YP_001205604.1| putative phage integrase [Bradyrhizobium sp. ORS278] gi|146193362|emb|CAL77378.1| putative phage integrase [Bradyrhizobium sp. ORS278] Length = 358 Score = 186 bits (473), Expect = 3e-45, Method: Composition-based stats. Identities = 97/348 (27%), Positives = 163/348 (46%), Gaps = 8/348 (2%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63 RLPP V + + G + Y +R G G R++LP P F AY +A+ G+ R Sbjct: 3 RRRLPPNVERNVVK-GHVYYAYRIGKGPRVKLPDPSSEEFGAAYQAAIQGAAQTRP--AP 59 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 + P +L LI+ Y S + SL +S+ + + + G +T + I + + Sbjct: 60 SQDAPQSLGALIASYYDSDEFRSLRASSKEGYRRRLELMRAAHGHRSVGGLTRERIEAKI 119 Query: 124 ES-RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + P + + L +R+L + A +++ +NP ++R K++ IR WT ++ F Sbjct: 120 LKPLSNKPGARLDTLKKLRILIRHAKALKWLKVNPSEGIKR--GKSKEIRGWTDNELAAF 177 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242 ++ W G++ R A+E +L G +D+ N +F +KT + V+ D Sbjct: 178 EARWPFGTRQRAAYEMMLNVGTARADTHLTTWTQADNEVFEYTRRKTDVAVLVQQADSLC 237 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADA 300 + LA P T + + + FS W + T AG+ HG+RK + ADA Sbjct: 238 QALAALPRRHVTILVTEWGKPFSVDGFSGWMRDAMTAAGLPLDCKPHGLRKTLGRMLADA 297 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 GATAHE+MA G T+ +AE YT+ ADR R G + ++ + P Sbjct: 298 GATAHEIMAALGHMTLAEAERYTREADRRRGGKRAIVKLEDHKANRIP 345 >gi|254559696|ref|YP_003066791.1| phage integrase [Methylobacterium extorquens DM4] gi|254266974|emb|CAX22774.1| phage integrase [Methylobacterium extorquens DM4] Length = 426 Score = 186 bits (471), Expect = 6e-45, Method: Composition-based stats. Identities = 89/345 (25%), Positives = 152/345 (44%), Gaps = 9/345 (2%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYINSPRKK 67 FV + RHG + YYFR+ + RL P F+ Y L G P R Sbjct: 7 KFVVSDVDRHGNVRYYFRRRPDPKTRLRGKPGSKIFMETYDRCLAGDAPAATACAEVR-- 64 Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127 P + + + Y S+ +G+L +++ + G R++ +H+R +SR+ Sbjct: 65 PGSFRSVCERYLGSSAFGALDPSTQAWRRRGLEAACEAHGGKLIRRLLARHVRQMRDSRR 124 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 TP++A L ++R LF WAV + +P V+R + ++G W+ +++ +++ Sbjct: 125 GTPAAANTLLKALRALFSWAVEHDLAPGDPTREVKRVRYASKGHHSWSLTEVEAYEAVHP 184 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM----- 242 G++ RLA LLY+ R D R G +H+ K V + Sbjct: 185 LGTKARLALALLLYTAGRREDVVRLGPRHVSAGRMRYVQAKNEHRAPVAMDIPIHPDLAE 244 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301 + ++ P +F + + + F FK +A + SAHG RK +A A+ G Sbjct: 245 AIASVPPSSCPSFLETDYGRSFSPNGFGNRFKEWCIQAALPHCSAHGCRKATAARLAERG 304 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346 AT H++MA G +T+++ E YT+ A R RL + SD Sbjct: 305 ATPHQIMAITGHRTLEEVERYTREAQRARLADDAMALLPRRSGSD 349 >gi|86358521|ref|YP_470413.1| integrase/recombinase protein [Rhizobium etli CFN 42] gi|86282623|gb|ABC91686.1| probable integrase/recombinase protein [Rhizobium etli CFN 42] Length = 404 Score = 185 bits (469), Expect = 1e-44, Method: Composition-based stats. Identities = 85/359 (23%), Positives = 154/359 (42%), Gaps = 18/359 (5%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRL-------PYPHESTFIPAYMSALTGSTP 56 RL + + G YY RK +++R+ F+ AY +AL Sbjct: 3 KTRL-RYCVYDPDPRGNPRYYVRKNGYKKVRIFEKFDDGRGNITEAFMKAYWAALAAMDG 61 Query: 57 KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT 116 + T WL+ +Y +S + L V ++ S + +G Y+K Sbjct: 62 GAAPSKKEVPREDTFDWLVDQYYRSNAFKRLEVTTQSDKRSVLARFCMTAGPLPYKKFRQ 121 Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY--VAINPCLSVERPKRKTEGIRPW 174 + + + RK TP +A + + +R LF WA++Q+ ++ NP +++ +EG W Sbjct: 122 QDVANSQLKRKETPGAADKLVKVLRALFNWAMKQDPPLISANPATGIKKLNAASEGFHTW 181 Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-- 232 T +++ ++++ G+ RLA E ++ G R SD+ G QH +K Sbjct: 182 TPDEIDTYRAYHPIGTTARLALEIMINVGARISDAAYIGRQHESGGELRFTARKNRNRKP 241 Query: 233 --ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGV 289 I V + + L T G + + + + AG+ SAHG+ Sbjct: 242 TVIEVPMMPDLVDALRHTKTGDFNYLVTEHGRPFTVNGLGNRMREWCDAAGLPQCSAHGL 301 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 RK +A I A++GA+A E+ A +GW ++ AETY + A + ++ R++ D +P Sbjct: 302 RKAAAVIFAESGASAPEMCAVFGWSKLETAETYIRNAQKRKMASNAFARLA---DYRNP 357 >gi|218528998|ref|YP_002419814.1| integrase family protein [Methylobacterium chloromethanicum CM4] gi|218521301|gb|ACK81886.1| integrase family protein [Methylobacterium chloromethanicum CM4] Length = 426 Score = 184 bits (468), Expect = 1e-44, Method: Composition-based stats. Identities = 89/345 (25%), Positives = 152/345 (44%), Gaps = 9/345 (2%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYINSPRKK 67 FV + RHG + YYFR+ + RL P F+ Y L G P R Sbjct: 7 KFVVSDVDRHGNVRYYFRRRPDPKTRLRGKPGSKIFMETYDRCLAGDAPAATACAEVR-- 64 Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127 P + + + Y S+ +G+L +++ + G R++ +H+R +SR+ Sbjct: 65 PGSFRSVCERYLGSSAFGALDPSTQAWRRRGLEAACEAHGGKLIRRLLARHVRQMRDSRR 124 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 TP++A L ++R LF WAV + +P V+R + ++G W+ +++ +++ Sbjct: 125 GTPAAANTLLKALRALFSWAVEHDLAPGDPTREVKRVRYASKGHHSWSLTEVKAYEAVHP 184 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM----- 242 G++ RLA LLY+ R D R G +H+ K V + Sbjct: 185 LGTKARLALALLLYTAGRREDVVRLGPRHVSAGRMRYVQAKNEHRAPVAMDIPIHPDLAE 244 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301 + ++ P +F + + + F FK +A + SAHG RK +A A+ G Sbjct: 245 AIASVPPSSGPSFLETDYGRSFSPNGFGNRFKEWCIQAALPHCSAHGCRKATAARLAERG 304 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346 AT H++MA G +T+++ E YT+ A R RL + SD Sbjct: 305 ATPHQIMAITGHRTLEEVERYTREAQRARLADDAMALLPRRSGSD 349 >gi|312115482|ref|YP_004013078.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100] gi|311220611|gb|ADP71979.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100] Length = 352 Score = 183 bits (464), Expect = 4e-44, Method: Composition-based stats. Identities = 84/348 (24%), Positives = 152/348 (43%), Gaps = 8/348 (2%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYIN 62 + PP+ + +YF + R+R+P P F+ Y A + K I Sbjct: 6 KSKAPPYCHWKTNGRNFGCWYFERPGYPRVRVPGLPWTPEFMAVYEKA---TKAKPAEIG 62 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122 + R P +L +I Y SA W LA +++ ++ + + G + +HI+ Sbjct: 63 ASRTVPRSLGAVIVAYYSSAAWRGLASSTKRTYGGVIEALREAHGGMPIAGLKREHIKKL 122 Query: 123 VESRKHTPSS--AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 +E + + A + L+ + +L A+ + NP +V++ K + G WT++++ Sbjct: 123 IEKKALEGGACAANRLLSVLGILLDVALDAGLIETNPARTVKKLKHRAIGFHTWTEDEVA 182 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 F++ W+ ++ RLAFE LL + R SD + + ++ QKT + + L Sbjct: 183 AFRAHWAIETRQRLAFELLLCTAQRSSDVRQMRTAQIAGGCVALSQQKTHAPLRIPLLPE 242 Query: 241 FMKLLAMTPIGKETFFINNDKQK-MNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISA 298 LA P+ + + F ++ K AG+ + SAHG+RK +A A Sbjct: 243 LQAALAAAPVIGAETALVTQYGRAFTEKGFGLFIKKACVAAGLTHCSAHGLRKAAARRLA 302 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346 +AG T H++ A G T+ + E YTK A ++RL + D Sbjct: 303 EAGCTVHQIAAITGHATLREIERYTKEASQLRLAEAAFATLRGTSDER 350 >gi|300023048|ref|YP_003755659.1| integrase family protein [Hyphomicrobium denitrificans ATCC 51888] gi|299524869|gb|ADJ23338.1| integrase family protein [Hyphomicrobium denitrificans ATCC 51888] Length = 411 Score = 182 bits (461), Expect = 8e-44, Method: Composition-based stats. Identities = 88/351 (25%), Positives = 161/351 (45%), Gaps = 18/351 (5%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLP-YPHESTFIPAYMSALTGSTP---KREYINSP 64 ++ ++ RHG + YFR R+IRL P F Y S + K S Sbjct: 12 RYLVEDTDRHGNVRIYFRYPGYRKIRLRERPTSPEFAERYSSLIEQFATGCYKEAEKTSV 71 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII---------RKSGDFDYRKIT 115 P TL WL++ +R S + +L +++ + + ++ +F +I Sbjct: 72 SAVPGTLGWLVTAFRASKDFSNLDPSTQRTRARVLESMLNEPIFQEAAETFRNFPLDRIK 131 Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 + + +K P +A + ++R +FKWA +++ NP +S+ +P+ + G W Sbjct: 132 LSDLEVLRDRKKALPGAATDRVKALRPMFKWATSKKHCVANPAISLTKPRLISNGHHTWL 191 Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--- 232 ++++ F+ G++ LA +LY+G R SD+ + G QH Q + K Sbjct: 192 PDEIEAFQRRHPLGTKAHLALSIMLYTGARRSDAVQLGRQHEQGDSLRWTAHKNRNRYPT 251 Query: 233 -ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVR 290 I + + + P G + + + F WF + +AG+ SAHG+R Sbjct: 252 IIHIPMLQPLAAAIQAGPTGDMVYLLTEYGKPFTIAGFGNWFHDRCIEAGLPQCSAHGLR 311 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 K +T +A+AGATAH+LMA +GW+++ +AE YT+ A+R ++ + Sbjct: 312 KAGSTRAAEAGATAHQLMAMFGWRSLAEAEIYTRAAERKKMAALGMAFLEK 362 >gi|323136183|ref|ZP_08071265.1| integrase family protein [Methylocystis sp. ATCC 49242] gi|322398257|gb|EFY00777.1| integrase family protein [Methylocystis sp. ATCC 49242] Length = 341 Score = 180 bits (457), Expect = 3e-43, Method: Composition-based stats. Identities = 125/342 (36%), Positives = 193/342 (56%), Gaps = 6/342 (1%) Query: 2 TPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYP-HESTFIPAYMSALTGSTPKREY 60 P R PP++ E +RHG+ ++YFRKG G R+RLP F AY +A+ G ++ Sbjct: 1 MPRPR-PPYLHSEISRHGRRVWYFRKGKGPRVRLPDAYGSDDFWSAYHAAMAGEVAPKKP 59 Query: 61 INSPRKKPTTLKWLISEYR-KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119 K +L+WLI +YR +S+HW LA+ +R E F +I +GD Y +T I Sbjct: 60 AG---AKSGSLRWLIDKYRAESSHWSQLALETRQRRERIFQAVIEAAGDKAYTAVTRAKI 116 Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 G + R+ TPS+A FL + LF WA ++VA NPC V+ ++T+G RPWT+ D+ Sbjct: 117 VEGRDRRRATPSAANHFLKARAGLFAWAFEADHVATNPCEGVKMLSQRTDGHRPWTEADI 176 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239 ++F++ W G++ RLA L+Y+GLR D + G QH+++ + S++T+KT T + + + Sbjct: 177 ERFEARWPVGTRERLALAILMYTGLRRGDVVKLGRQHVRDGVISLRTEKTNTPVHLPMLP 236 Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISAD 299 +++ +P G F + + A FS F AGV+ S HG+RK +AT +A+ Sbjct: 237 ALAEIIDKSPTGDLNFIATKSGRPICADAFSAMFLCACRAAGVDASPHGLRKVAATRAAN 296 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 AGAT EL A +GW A YTK ADR RL + +++ Sbjct: 297 AGATVAELEALFGWTGGQMASHYTKEADRARLARQAIAKLAK 338 >gi|148257958|ref|YP_001242543.1| putative phage integrase [Bradyrhizobium sp. BTAi1] gi|146410131|gb|ABQ38637.1| putative phage integrase [Bradyrhizobium sp. BTAi1] Length = 382 Score = 179 bits (455), Expect = 4e-43, Method: Composition-based stats. Identities = 98/350 (28%), Positives = 163/350 (46%), Gaps = 11/350 (3%) Query: 5 LRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGST-PKREYIN 62 RLPP+V + + G FR+G G RIRLP P S F+ AY SAL G R + Sbjct: 3 RRLPPYVERNHVK-GHTYLSFRRGKGARIRLPDDPTSSEFMSAYQSALLGQATSSRPELR 61 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122 SP T+ LI+ Y +S+ + L S+ + + + + G ++ + I +G Sbjct: 62 SPVH--GTISALIASYMRSSDYIGLRKTSKEGYGRRLEALRIEHGHRTVAGLSRERIITG 119 Query: 123 V-ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + + P +A+ L +R+L + A+ ++ +P + ++RPK + IR WT+++++ Sbjct: 120 ILQPFADRPGAALDTLKKLRILIRHAINIGWIKHDPSVGIKRPKLQR--IRSWTEDEIEL 177 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 F+ W ++ RLAFE L +G R SD R H+ Q+ + Sbjct: 178 FRKKWPLETKQRLAFELFLNTGQRRSDVVRMAWSHITPENRIAVAQQETGRRLLIPLHRD 237 Query: 242 M-KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISA 298 + LA+ + Q + FS W + T AG+ HG+RK + A Sbjct: 238 LLSALAVAKRDHMSIITTAYGQSFSVDGFSQWMRDAITDAGLPLGCQPHGLRKATGRRLA 297 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 +AGATA +M+ G T+ +AE YT+ AD+ L + R+ +D P Sbjct: 298 EAGATAKMIMSVLGHTTLAEAERYTEEADQASLAVDAVARLEGHKANDFP 347 >gi|329888236|ref|ZP_08266834.1| phage integrase family protein [Brevundimonas diminuta ATCC 11568] gi|328846792|gb|EGF96354.1| phage integrase family protein [Brevundimonas diminuta ATCC 11568] Length = 343 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 86/340 (25%), Positives = 159/340 (46%), Gaps = 10/340 (2%) Query: 8 PPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67 P FV+ R RHG + + FR+ + + + A+ + S + + I R K Sbjct: 5 PKFVSAYRDRHGVLRWRFRRTGSPQSQTRAIFGTEDWWAWYA--ESSEARPKAIGQDRTK 62 Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR- 126 P ++ L Y SA + L N++ +++ D+ G + ++ +HIR ++ Sbjct: 63 PGSIHALAVAYYSSARFLQLKPNTKHTYKGVLDRYRDVHGAKPFSRLEPRHIRQQMDDMA 122 Query: 127 ------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 +T + A L +R + ++A+ + ++++P + V K +T G WT++++ Sbjct: 123 REMIEQGNTVTPANTMLKVLRSVMRFAMERGLISVDPTMGVRMLKHQTSGFHTWTEDEIA 182 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 F++ W GS+ RL F+ LLY+ R D + V + + +++ KTG +I + Sbjct: 183 MFEAHWPLGSKQRLGFDLLLYTAQRSDDVRQMTVHQIARDRVTVRQGKTGQLIDIPQHPR 242 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299 LA + IG + F W K A KAG+ SAHG+RK + A+ Sbjct: 243 LQASLAASAIGHLVVLTTQHGKMYTPNGFGNWIKDAAVKAGLPHCSAHGLRKAQSRRLAE 302 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 AG + HE+ A G +++ + E YT+ A+R L +R+ Sbjct: 303 AGCSTHEIAAITGHQSLKEIERYTREANRRGLADGAMKRV 342 >gi|260431275|ref|ZP_05785246.1| phage integrase [Silicibacter lacuscaerulensis ITI-1157] gi|260415103|gb|EEX08362.1| phage integrase [Silicibacter lacuscaerulensis ITI-1157] Length = 373 Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats. Identities = 88/346 (25%), Positives = 156/346 (45%), Gaps = 11/346 (3%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYP-HESTFIPAYMSALTGSTPKREYIN 62 RL +V ++ RHG + Y+R+ +GR++RL P F+ Y +A G + Sbjct: 7 KFRL-KYVVEDVDRHGNVRLYYRR-NGRKVRLRGPAGSPEFLADYRTAAAGPKEAKTD-K 63 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK--SGDFDYRKITTKHIR 120 + R P + +WL +Y KSA + L ++ S ++ GD + ++ +HIR Sbjct: 64 AGRVVPKSFRWLCVQYFKSAMFQELDPRTQKVRRSILERFCEHKGDGDKPFAQLLPRHIR 123 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + P +A + ++R L+++A+R ++ NP VE K +G WT +++ Sbjct: 124 VRRDEMADRPEAANGMVKAVRQLYRYALRYDHHDDNPAEKVEYLKGNPDGFHSWTLAEIE 183 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL--- 237 +++ G+ RLA LY+G R +D G QH+++ K V + Sbjct: 184 KYEEAHPIGTPARLALALALYTGQRRADLVVLGKQHVRDGWLIFTQHKGRNRKPVRMEIP 243 Query: 238 -PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSAT 295 +++ TP G TF + + + F F+ AG+ S HG+RK +A Sbjct: 244 VIPELQQIIDATPTGDLTFLVTAFNRPFTSNGFGNRFRKWCDDAGLPQCSVHGLRKAAAA 303 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 A+ G T E+M+ G +T + YT+ A + RR+S Sbjct: 304 RLAELGCTEQEIMSITGHRTSKEVTRYTRAASQKTRAESALRRLSR 349 >gi|146343024|ref|YP_001208072.1| putative phage integrase/recombinase [Bradyrhizobium sp. ORS278] gi|146195830|emb|CAL79857.1| Putative phage integrase/recombinase [Bradyrhizobium sp. ORS278] Length = 429 Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats. Identities = 100/376 (26%), Positives = 166/376 (44%), Gaps = 31/376 (8%) Query: 2 TPSLRLPPFVTKERTRHGKIIYYFRKG--HGRRIRLPY-PHESTFIPAYMSALTGSTPKR 58 P R P ++ KE RHG+ ++Y R G+R R+ + F Y AL G + Sbjct: 5 MPRPRKP-YLHKEINRHGRTVWYVRNKDVGGKRTRIRGEYGSTEFNRNYDIALAGMFNRP 63 Query: 59 EYINSPRKKP-----TTLKWLISEYR-KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR 112 P + +LKWL EY+ K+ W + ++ S ++ +G+ Sbjct: 64 RLAIDPSEARAKVFDGSLKWLWEEYKAKAPDWREMKASTHKQRNSLMIHVLEANGNKRAA 123 Query: 113 KITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-I 171 I +HI G+ R PS+A FLT+MR +F WAV Q+ +A++P ++ PK Sbjct: 124 AIQKQHILDGLGRRAQNPSAARHFLTTMRRMFIWAVAQKILAVDPTEGIKTPKPAKTEGF 183 Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--- 228 W+ D++++ W G++ R+ + L++G R D+ G + + Sbjct: 184 VTWSDADVRRYYKRWPLGTRERVMIDVYLFTGFRRGDAASFGPADVTEQVQERIGPDGKL 243 Query: 229 ----------------TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272 +T + D + L P+G ET+ + M Sbjct: 244 EQISVPIITKRLEKGSETIEVTFPMLDVLRRTLEAGPVGTETYIATRQGKPMTKESLGNV 303 Query: 273 FKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 FK K AG+ N+SAHG+RK +AT++A+ GAT EL A +GW A YT+ A+R +L Sbjct: 304 FKEKCVAAGLANRSAHGLRKAAATVAAENGATEAELDAIFGWTDRRMASHYTRNANRKKL 363 Query: 332 GIKNSRRISSVVDSDD 347 ++ + S+D Sbjct: 364 AYGGVAKLERKIGSED 379 >gi|170739145|ref|YP_001767800.1| integrase family protein [Methylobacterium sp. 4-46] gi|168193419|gb|ACA15366.1| integrase family protein [Methylobacterium sp. 4-46] Length = 385 Score = 172 bits (437), Expect = 5e-41, Method: Composition-based stats. Identities = 115/338 (34%), Positives = 173/338 (51%), Gaps = 9/338 (2%) Query: 2 TPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYP-HESTFIPAYMSALTGSTPKREY 60 P R PP + +E TRHG +++Y R G G+R R+ F Y A+ G + Sbjct: 5 MPRPR-PPHLVRETTRHGGVVWYVRVGQGKRTRMREAYGTEAFWRDYRLAVEG----KPT 59 Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 TL WLI +Y +SA W L+ +R + + I +G + + I Sbjct: 60 EAPKAAATGTLSWLIGKYVESAEWSDLSAATRKQRHAVYRAIEETAGTKPAKLVDKASIL 119 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE--GIRPWTKED 178 +G + R+ P +A FL +MR LF WAV ++Y+ INP L V+ + G WT+E+ Sbjct: 120 AGRDRRRDRPHAANNFLKAMRGLFGWAVDRDYLTINPTLGVKLLTGDNDDAGFHAWTEEE 179 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 + +F+S W G++ RLAF+ LLY+GLR D+ R G QH++ FSI+T+KTG ++T + Sbjct: 180 LARFESRWPIGTRQRLAFDLLLYTGLRRGDAVRLGRQHVRGQEFSIRTEKTGAVVTRPVL 239 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISA 298 + + T G F F WFK +AGV S+HG+RK A +A Sbjct: 240 LPLAQSITATKTGGLAFICTERGTPFTKESFGTWFKKVCREAGVPGSSHGLRKAGARRAA 299 Query: 299 DAGATAHELMATYGWKTVD-QAETYTKGADRIRLGIKN 335 +AGAT +L A +GW ++ TYT+ AD RL + Sbjct: 300 EAGATEAQLNALFGWAPGSRESATYTRTADNARLAREA 337 >gi|75674473|ref|YP_316894.1| phage integrase [Nitrobacter winogradskyi Nb-255] gi|74419343|gb|ABA03542.1| phage integrase [Nitrobacter winogradskyi Nb-255] Length = 359 Score = 172 bits (437), Expect = 5e-41, Method: Composition-based stats. Identities = 95/344 (27%), Positives = 157/344 (45%), Gaps = 8/344 (2%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYINSPR-- 65 + ++ RHG + Y R+ +++RL P F+ Y AL G R Sbjct: 16 RYTYEDTDRHGNVRIYVRRPGMKKVRLRKTPGTPEFLEEYRDALAGRLELPSDKRPVRVP 75 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 TL+WL +Y +SA + L ++ D I ++ GD Y + +H+R + Sbjct: 76 AGKGTLRWLCEQYYRSAEYKRLEPRTQHVRRLILDSICKRDGDKPYALMEPRHLRRRRDE 135 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + TP +A + ++R +F +A+ + NP V K +EG W E+++QF+ Sbjct: 136 KSDTPEAANGIVKALRQVFTFALENDLAQRNPAKDVPYLKSGSEGFHSWNIEEVRQFEER 195 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----ITVELPDGF 241 S GS+ RLA LLY+G R SD G QH+++ F+ K +++ + Sbjct: 196 HSVGSKARLALALLLYTGQRRSDVVALGRQHIRDGWFTFTQVKNRNRKPVTLSIPVRPEL 255 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300 ++ TP G T+ + + A F WF+ + +AG+ SAHG+RK +A A+ Sbjct: 256 KAIIDATPSGNLTYLVTAFGKPFTANGFGNWFRERCDEAGLPHCSAHGLRKAAAARLAEL 315 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 GA+ E+MA G T + YT+GA + L R D Sbjct: 316 GASESEIMAVTGHTTSKEIVRYTRGARQKVLAANAMARFGENKD 359 >gi|85716138|ref|ZP_01047113.1| Integrase /recombinase [Nitrobacter sp. Nb-311A] gi|85696971|gb|EAQ34854.1| Integrase /recombinase [Nitrobacter sp. Nb-311A] Length = 316 Score = 172 bits (436), Expect = 7e-41, Method: Composition-based stats. Identities = 96/299 (32%), Positives = 156/299 (52%), Gaps = 5/299 (1%) Query: 44 IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103 + AY +AL G P+ + TL+WL + YR+S+ W L+ +R E+ ++ Sbjct: 1 MEAYHAALAGERPQPK----SEAARGTLEWLWTLYRQSSAWADLSAATRKQRENIMKHVL 56 Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163 + +G IT I +G + R TPS A F++++R LF WA+ V +P V+R Sbjct: 57 KSAGHQPLSHITRASIVAGRDRRAKTPSQAKNFISTVRGLFGWALDANLVNSDPTAGVKR 116 Query: 164 PKRKTEG-IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222 PKRK + WT++D+++F+ W+ G++ R+ F+ L++GLR D+ + G QH+++ Sbjct: 117 PKRKRSEGFQVWTEDDIEKFQKRWNRGTRERVMFDLFLFTGLRRGDAAQVGKQHVKDGSI 176 Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 SI T+KTG +T+ + L P+G F M F+ AG+ Sbjct: 177 SINTEKTGIRVTIPIQPELQATLDAGPVGDLAFIATAAGVPMTKESLGNAFRDACRSAGI 236 Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 KSAHG+RK +AT +A+ GAT EL A +GW A YT+ +R L + ++S Sbjct: 237 TKSAHGLRKAAATNAANRGATERELEALFGWVGGQMASLYTRSVNREALSKGAAAKMSR 295 >gi|89070660|ref|ZP_01157933.1| phage integrase [Oceanicola granulosus HTCC2516] gi|89043740|gb|EAR49943.1| phage integrase [Oceanicola granulosus HTCC2516] Length = 375 Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats. Identities = 90/347 (25%), Positives = 153/347 (44%), Gaps = 10/347 (2%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPYP-HESTFIPAYMSALTGSTPKREYINS-PRK 66 +V ++ RHG + Y+R+ +G + RL P F+ Y A G R + R Sbjct: 11 KYVVEDVDRHGNVRLYYRR-NGTKTRLRGPVGSPEFLIDYRRAAAGPKEVRGHKARVGRV 69 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK--SGDFDYRKITTKHIRSGVE 124 P +LKWL +Y KSA + L ++ S ++ GD + + +HIR + Sbjct: 70 VPRSLKWLCVQYYKSAMFTELDPRTQKVRRSILERFCEHKNDGDKPFALLLPRHIRVRRD 129 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 P +A + ++R L+++A+R ++ NP VE K + +G WT ++++F+ Sbjct: 130 EMADRPEAANGMVKALRQLYRYALRYDHHDDNPADKVEYLKGEPDGFHSWTLAEIKKFED 189 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT----IITVELPDG 240 GS RLA LY+G R +D G QH+++ K + + + Sbjct: 190 AHPVGSPARLALALALYTGQRRADLVTLGKQHVRDGWLIFTQHKGRNRKPVRLEIPVIPE 249 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISAD 299 +++ TP G F + + + F F+ AG+ S HG+RK +A A+ Sbjct: 250 LQRIIDATPTGDLNFLVTAFNRPFTSNGFGNRFRKWCDDAGLPNCSVHGLRKAAAARLAE 309 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346 G T E+MA G T + YT+ A + RR + +SD Sbjct: 310 LGCTEQEIMAITGHATSKEVTRYTRAASQKTRAESALRRFTEEQNSD 356 >gi|260433594|ref|ZP_05787565.1| phage integrase family protein [Silicibacter lacuscaerulensis ITI-1157] gi|260417422|gb|EEX10681.1| phage integrase family protein [Silicibacter lacuscaerulensis ITI-1157] Length = 374 Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats. Identities = 76/345 (22%), Positives = 132/345 (38%), Gaps = 8/345 (2%) Query: 1 MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60 M P RHG + +R F Y +AL K + Sbjct: 2 MRKRSDKYPGAKPYFDRHGNRRWRYRCKGFSAELGTDYGSDEFERRYQAALNHQKEK-QA 60 Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 + R P T L++ + + + L ++ + + + + R+ G + +H+ Sbjct: 61 NGAGRSVPGTFDDLVARFYQ-LKFPELEEITKRDYRAVIEPLRRQHGHKRVAGMRQRHVL 119 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 TP+ A + L + L K AV+ E+ + NP VE + + G WT++++ Sbjct: 120 EIKAQLSSTPAQANKTLKRLSQLMKLAVQLEWRSDNPVSGVEFYQTGSSGYHTWTEDEIA 179 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-----IITV 235 +F + GS LA +LY+G D+ G +++ + KT + + Sbjct: 180 RFYAKHERGSLAYLAMTLMLYTGASRKDAVALGRGNIRGGRLIYRRSKTRKNPNGIEVNI 239 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSA 294 + L P G TF N KQ + + KAG+ S+HG+RK Sbjct: 240 PVHPTLADALETVPEGAFTFLETNRKQARSPNGLGNDMREWCDKAGLPMCSSHGLRKAIC 299 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 A+AG T E+M+ G T+ A+ Y + R L R+ Sbjct: 300 RRIAEAGGTPFEIMSVSGHITLAMAQHYCEAFGRKNLADSAVHRL 344 >gi|92118356|ref|YP_578085.1| phage integrase [Nitrobacter hamburgensis X14] gi|91801250|gb|ABE63625.1| phage integrase [Nitrobacter hamburgensis X14] Length = 359 Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats. Identities = 90/349 (25%), Positives = 155/349 (44%), Gaps = 10/349 (2%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLP-YPHESTFIPAYMSALTGSTPKREYIN 62 +LPP V + + G + FR G G RI+LP P+ F AY A+ ++ Sbjct: 3 RRKLPPNVERNVVK-GHVYLSFRVGKGPRIKLPPDPNSDEFRAAYAEAIGKTSQAP---T 58 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122 + ++ LI Y S + +L S+ + S DQ+ ++ G +T + I++ Sbjct: 59 PAKAAERSIGALIIRYLSSTAFKALRNTSKQGYRSRIDQMRKEHGHRSVSGLTKERIQTQ 118 Query: 123 V-ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + + TP +A+ L +R+L + A E++ +P ++RPK ++ IR WT + Sbjct: 119 ILDPLADTPGAALDTLKKLRILIRHARDIEWLNTDPSDGIKRPK--SKEIRSWTDSECTA 176 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 F+ W G++ R A+E +L G +D R + F QKTG + + + Sbjct: 177 FEKRWKVGTRQRAAYELMLNVGTARADVHRVTWNQFDEDNFEYSRQKTGVEVAMTMAKRC 236 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISAD 299 + P T + FS + + AG+ HG+RK AD Sbjct: 237 RDAVYALPRKHITVLNTEFGKPFTVDGFSGFMRDAIKAAGLPLDCRPHGLRKTLGRRLAD 296 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 G +AH++MA G T+ +AE YT+ ADR R G + + + ++ P Sbjct: 297 RGVSAHDIMAALGHTTLGEAERYTREADRRRGGRRAGKALDDQTENKTP 345 >gi|146276197|ref|YP_001166356.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025] gi|145554438|gb|ABP69051.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025] Length = 375 Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats. Identities = 92/349 (26%), Positives = 146/349 (41%), Gaps = 7/349 (2%) Query: 1 MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60 M+ P VTK RHGK+ + FRK + LP P+ S + Sbjct: 8 MSRKRNPFPGVTKVVDRHGKVRWRFRKKDRADVYLPGPYASAAFR--AAYEAAVAGAATP 65 Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 +L WLI Y S + +L+ R D + +G + ++ T+H+ Sbjct: 66 AARSTAAYGSLAWLIETYLTSPRFQNLSETRRKRLRPDLDWLRENAGKLPFNRLATRHVE 125 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQ--EYVAINPCLSVERPKRKTEGIRPWTKED 178 + + + P +A ++ +LF +A++ NP +R K +G WT + Sbjct: 126 ALMAKKA-GPWAANMIKKALSLLFNYAIKNEICDQKHNPATLADRRKVNPDGWHAWTSAE 184 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 + QF ++ EG+ RLA +L +G D R G Q++ + +K+ I E+ Sbjct: 185 IAQFLAYHGEGTPQRLACLLILNTGAARGDLIRLGWQNVNGGRIRYRRRKSEVIGDYEIL 244 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATIS 297 L P + F + N + F+ WFK AG+ SAHGVRK AT Sbjct: 245 PELAAELRHVPPAQMLFLMLNGR-PFKPDSFTDWFKRACVAAGLPHCSAHGVRKGQATNI 303 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346 AD+G + E+M+ T +A TYTK A+R RL R+S Sbjct: 304 ADSGGSEWEVMSFLAHATPHEAATYTKKANRGRLADSGLGRLSGAKAEQ 352 >gi|326803729|ref|YP_004321547.1| tyrosine recombinase XerD [Aerococcus urinae ACS-120-V-Col10a] gi|326651687|gb|AEA01870.1| tyrosine recombinase XerD [Aerococcus urinae ACS-120-V-Col10a] Length = 299 Score = 166 bits (419), Expect = 7e-39, Method: Composition-based stats. Identities = 47/286 (16%), Positives = 103/286 (36%), Gaps = 26/286 (9%) Query: 69 TTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVE 124 T+ LI ++ + L+ N+ ++ + +Q + ++G D + + + I +E Sbjct: 1 MTINDLIEDFLIALRVEQGLSENTIKTYHNVLNQFQMILSEAGIEDIQAVKRQDIIQQLE 60 Query: 125 SRKHTPSSAIQ---FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + + +L+++R FK+ + + NP ++ PK+K + + + E++ + Sbjct: 61 NLNQKGRAVSTMSQYLSTLRHFFKYLILDSVIEENPVENISLPKKKQQLPQVLSVEEVDR 120 Query: 182 FKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVE 236 G + R E L SGLR S+ + ++ K + Sbjct: 121 LLEMPDVNSTLGLRDRSLLELLYASGLRVSELVHLKISDFHEDLGFLQTIGKGNKERIIP 180 Query: 237 LPDGFMKLLAMT------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284 L + L + ++N+ + ++ K AG+ K Sbjct: 181 LGEVAKDWLQTYLKESRLKLLGENDQSQGMIYLNHHGRPLSRQGVWKKLKQYIQAAGITK 240 Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 S H +R AT + GA + G + + YT + Sbjct: 241 EVSPHTLRHSFATHLLENGADLRVVQELLGHADISTTQIYTHIHSQ 286 >gi|315121974|ref|YP_004062463.1| integrase family protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|315122942|ref|YP_004063431.1| integrase family protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495376|gb|ADR51975.1| integrase family protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496344|gb|ADR52943.1| integrase family protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 299 Score = 163 bits (412), Expect = 4e-38, Method: Composition-based stats. Identities = 108/300 (36%), Positives = 168/300 (56%), Gaps = 7/300 (2%) Query: 44 IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103 + Y AL G ++ S T KWLI +YR S H+ SL +R ++ F QII Sbjct: 1 METYADALAGRLRQKGDHGS----KGTFKWLIDQYRLSGHFQSLNPTTRRVRDNLFYQII 56 Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163 + SGD + KIT +H+++ V+ R PS AI FL ++ +FKWA E + NP + V R Sbjct: 57 KDSGDIPFAKITRRHLQNAVDRRSSKPSVAISFLKAISPVFKWAETCELITKNPVIGVCR 116 Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223 P +T G+ WT E ++ ++ + RLA E +L+ GLR SD R G QH+++++ S Sbjct: 117 PPIRTIGMHTWTMEQVEVYRKHHPINTMARLALELMLFLGLRRSDVIRIGKQHVKDSVLS 176 Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT-QFSIWFKAKATKAGV 282 I T+KTG + V + + K L + + TF I + +++ F WF+ + +AG+ Sbjct: 177 IHTKKTGKQVHVPIFEDLQKCLDAVGVDRGTFLITAIGKPFSSSGSFGNWFRDRCKEAGL 236 Query: 283 N--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 AHG+RK ATI+A+AGA+ HELMA +GW D A+ YT+ + +L K ++ I+ Sbjct: 237 PDKCRAHGLRKAGATIAANAGASPHELMAMFGWSKTDMADLYTREVNSKKLAYKAAKMIA 296 >gi|126737075|ref|ZP_01752810.1| Integrase [Roseobacter sp. SK209-2-6] gi|126721660|gb|EBA18363.1| Integrase [Roseobacter sp. SK209-2-6] Length = 332 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 73/321 (22%), Positives = 126/321 (39%), Gaps = 15/321 (4%) Query: 18 HGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76 G++ YFR GR +RLP P+ + Y + G + T + LI Sbjct: 13 KGRLYQYFR-KDGRYVRLPDDPNSEEYDREYWRLMRGGGALSQRF--------TFEKLIQ 63 Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136 Y++S W LA ++ + + + G D K+ I + KH A Sbjct: 64 SYKRSPRWEGLAPRTKADYSKVLEYLAGTIGQKDPTKMRRSTIIEAQMANKHRARFANYI 123 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196 + +LF+ AV ++ NP +E+ G + RLAF Sbjct: 124 PHMLSILFEHAVDLDWQRDNPAKGIEKI---KTGEGHKPWPKPAVATFRKNVRGLERLAF 180 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF 256 E L +G R SD R ++++ + KTG + + D +L TP + Sbjct: 181 ELALGTGQRASDLTRMKWSDIEDDGIWVTQGKTGVRLWIPFTDSLRAILDETPRKSLHWI 240 Query: 257 INNDKQKM-NATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWK 314 +++D + F + G+ HG+R +A A+AG T H++ A G K Sbjct: 241 LSDDFGRQLGYDYIQKKFLKARKELGLEGYGFHGLRYSAAGELAEAGCTDHQIAAITGHK 300 Query: 315 TVDQAETYTKGADRIRLGIKN 335 ++ + Y+K A++ RL + Sbjct: 301 SLSMIQKYSKSANQKRLAQQA 321 >gi|319789925|ref|YP_004151558.1| integrase family protein [Thermovibrio ammonificans HB-1] gi|317114427|gb|ADU96917.1| integrase family protein [Thermovibrio ammonificans HB-1] Length = 271 Score = 161 bits (406), Expect = 2e-37, Method: Composition-based stats. Identities = 47/263 (17%), Positives = 89/263 (33%), Gaps = 10/263 (3%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 L + + L+ + + + + I+ GD D + T + +P Sbjct: 3 LSEAVELFLNFKE-KELSPRTVKEYRNDLNLFIKTVGDKDVSAVKTADLMLFRGRMGCSP 61 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-IRPWTKEDMQQFKSF-WSE 188 S + ++++ F + V E + NP R K+ + T E++++ Sbjct: 62 SLINRRISALNTFFNFLVDMEIIDKNPVKPSLRIKKVKQRVPEALTPEEVEKVLEAARKR 121 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK---TQKTGTIITVELPDGFMKLL 245 G + L F+ +LY GLR S+ + + K G + L F + L Sbjct: 122 GERDYLMFKTILYCGLRISELLSLTKESIVEFKGRPVLKVIGKGGKERFIPLSRSFAREL 181 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAH 305 E + ++ F + GV H +R AT+ D G Sbjct: 182 ISYAERVEGEKLF----PLSYQGAKYIFNRVRDETGVPIHPHKLRHTFATVLVDRGVDIR 237 Query: 306 ELMATYGWKTVDQAETYTKGADR 328 + A G + + + Y K D Sbjct: 238 VIQAFLGHASPNTSARYAKVRDE 260 >gi|220922490|ref|YP_002497792.1| integrase family protein [Methylobacterium nodulans ORS 2060] gi|219947097|gb|ACL57489.1| integrase family protein [Methylobacterium nodulans ORS 2060] Length = 346 Score = 161 bits (406), Expect = 2e-37, Method: Composition-based stats. Identities = 119/345 (34%), Positives = 178/345 (51%), Gaps = 7/345 (2%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYP-HESTFIPAYMSALTGSTPKREYINSPR 65 PP + +E TRHGK ++Y R G G+RIR+ F Y A+ + Sbjct: 5 RPPHLVREITRHGKPVWYVRVGQGKRIRMRETYGSPEFWRDYRLAVESGQLPAKQAGP-- 62 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 P TL WLI+ Y S W L+ +R + + + +G+ R I K I +G + Sbjct: 63 -NPGTLSWLIARYVASPEWADLSRRTRTGRHAILRAVEKTAGNELLRHIDRKAIVTGRDR 121 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT--EGIRPWTKEDMQQFK 183 R+ TPS+A FL +MR LF WAV E++ NP + V+ RK G WT+E+++QF+ Sbjct: 122 RRDTPSAANNFLYAMRALFAWAVEHEHIDQNPAVGVKPLARKNADVGFHTWTEEEVRQFE 181 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 + W G+Q RLA + LLY+GLR SD G QH++ + F+I+T+KTG ++ + Sbjct: 182 ARWPVGTQERLALDLLLYTGLRRSDVVVLGRQHVKGDTFTIRTKKTGAVVVRPILPPLAA 241 Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGAT 303 +A P G F + + F+ WF+ KAGV +HG+RK +A +A+AGA+ Sbjct: 242 SIAAAPTGDLAFLVTSRGTPWVDDSFAKWFRRACEKAGVPGRSHGLRKAAARRAAEAGAS 301 Query: 304 AHELMATYGWKTVD-QAETYTKGADRIRLGIKNSRRISSVVDSDD 347 EL A +GW+ ++ TYT+ AD RL R DD Sbjct: 302 EMELNALFGWRPGSRESATYTRAADVERLARGALMRNPRAWKGDD 346 >gi|146276881|ref|YP_001167040.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025] gi|145555122|gb|ABP69735.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025] Length = 362 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 80/346 (23%), Positives = 144/346 (41%), Gaps = 14/346 (4%) Query: 1 MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE-STFIPAYMSALTGSTPKRE 59 M + P+V + G+I + F G R LP P + F+ AY +AL + R Sbjct: 1 MKRARGKYPYVRPNTVK-GRIYWKFE-KDGFRCNLPGPWGFAEFVAAYEAALNHAKAPR- 57 Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119 + TL WLI +Y S + +L+ + + + D + ++G + + ++ +H+ Sbjct: 58 ---ASTAIEGTLSWLIEQYLGSLRFQNLSDSRKRTIRHELDWLREQAGRYHFARLEVRHV 114 Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKED 178 + + P++A +M +L +A ++ Y NP E+ K +G W +E+ Sbjct: 115 EKLMTKKA-GPTAANTVKKNMSMLCNFASKKLGYKGPNPAKFAEKLKTNPDGYHTWNEEE 173 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 +++F G++ RL L +G+ D R G QH++ + + KT + + Sbjct: 174 VERFLDRHGPGTKARLVILLALNTGMARQDLARVGRQHVKAGRIAYRRGKTSVAADLPIL 233 Query: 239 DGFMKLL-----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFS 293 L + + WF+ + +A V + HG+RK Sbjct: 234 PELAVELEAALANWSDGQMLFITQDKRPVGYTPESLGNWFRDRCAEANVPGALHGLRKAG 293 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 AT ADAGAT E+ + K A Y K A+R RL ++ Sbjct: 294 ATRLADAGATEWEIASYLAHKDTKTAAIYVKKANRARLADSGFAKL 339 >gi|241896295|ref|ZP_04783591.1| site-specific recombinase XerD [Weissella paramesenteroides ATCC 33313] gi|241870456|gb|EER74207.1| site-specific recombinase XerD [Weissella paramesenteroides ATCC 33313] Length = 302 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 46/283 (16%), Positives = 98/283 (34%), Gaps = 24/283 (8%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESR 126 + ++ +Y L+ N++ S++ Q + Y +T I + + Sbjct: 8 FEDVLVDYLHYLTVERGLSANTKHSYQQDLVQFFQYLIAEKYDTLTVVDRFTIMAFLGQL 67 Query: 127 KHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + S + ++++R F++ + NP V+ PK+ T E+++ Sbjct: 68 EQKGKSRNTIIRMVSTLRKFFEFVQMNNLITSNPMDQVDSPKKAQHLPAVLTLEEVEALL 127 Query: 184 S----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELP 238 G + R E + +GLR S+ + +L ++ K V + Sbjct: 128 QVPDTNTPLGLRNRTILEVMYATGLRVSELVNLRLDNLHLDLGLIQTIGKGDKERIVPIG 187 Query: 239 DGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 D +K L F+N+ ++ K +AG+ + S Sbjct: 188 DVAVKWLENYLNNSRPLLGKQQDPHVIFLNDHGHQLTRQGVWKLIKQWVKQAGITKDVSP 247 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 H +R AT + GA + G + + YT +++ Sbjct: 248 HTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHISNKR 290 >gi|270291303|ref|ZP_06197525.1| tyrosine recombinase XerD [Pediococcus acidilactici 7_4] gi|270280149|gb|EFA25985.1| tyrosine recombinase XerD [Pediococcus acidilactici 7_4] Length = 295 Score = 160 bits (404), Expect = 3e-37, Method: Composition-based stats. Identities = 49/282 (17%), Positives = 98/282 (34%), Gaps = 24/282 (8%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKI---TTKHIRSGVESRK 127 LI++Y + L+ N+ +S+ + + I I + +++ K Sbjct: 2 DDLINDYLHALKVERGLSDNTIVSYRQELRHLQNFLQEQHIADIKDVDRYTILNYLDALK 61 Query: 128 HTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 T + ++S+R FK+ + + + NP +++ PKR T E++++ Sbjct: 62 QTGRARSSSIHTISSLRKFFKYLLLNDQIQTNPMANIDPPKRAQHLPSVLTTEEVERLLK 121 Query: 185 FW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPD 239 G + R E + +GLR S+ + L + K + + D Sbjct: 122 VPDTSKPLGIRDRAILEVMYATGLRVSELIALNLNELHLEMGLIETVGKGNKQRIIPIGD 181 Query: 240 GFMKLLAMTPI----------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287 ++ L F+N + KA+ KAG+ K + H Sbjct: 182 VAIQWLERYINGPRRALLGAKRYNEIFLNQHGHPLTRQGVWKNLKAQVQKAGIKKNITPH 241 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R AT + GA + G + + YT + Sbjct: 242 TLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITQQR 283 >gi|304385052|ref|ZP_07367398.1| tyrosine recombinase XerD [Pediococcus acidilactici DSM 20284] gi|304329246|gb|EFL96466.1| tyrosine recombinase XerD [Pediococcus acidilactici DSM 20284] Length = 296 Score = 159 bits (403), Expect = 4e-37, Method: Composition-based stats. Identities = 49/282 (17%), Positives = 99/282 (35%), Gaps = 24/282 (8%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKI---TTKHIRSGVESRK 127 LI++Y + L+ N+ +S+ + + I I + +++ K Sbjct: 3 DDLINDYLHALKVERGLSDNTIVSYRQELRHLQNFLQEQHIADIKDVDRYTILNYLDALK 62 Query: 128 HTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 T + ++S+R FK+ + + + NP ++++ PKR T E++++ Sbjct: 63 QTGRARSSSIHTISSLRKFFKYLLLNDQIQTNPMVNIDPPKRAQHLPSVLTTEEVERLLK 122 Query: 185 FW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPD 239 G + R E + +GLR S+ + L + K + + D Sbjct: 123 VPDTSKPLGIRDRAILEVMYATGLRVSELIALNLNELHLEMGLIETVGKGNKQRIIPIGD 182 Query: 240 GFMKLLAMTPI----------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287 ++ L F+N + KA+ KAG+ K + H Sbjct: 183 VAIQWLERYINGPRRALLGAKRYNEIFLNQHGHPLTRQGVWKNLKAQVQKAGIKKNITPH 242 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R AT + GA + G + + YT + Sbjct: 243 TLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITQQR 284 >gi|83311808|ref|YP_422072.1| integrase [Magnetospirillum magneticum AMB-1] gi|82946649|dbj|BAE51513.1| Integrase [Magnetospirillum magneticum AMB-1] Length = 335 Score = 159 bits (401), Expect = 8e-37, Method: Composition-based stats. Identities = 72/337 (21%), Positives = 126/337 (37%), Gaps = 13/337 (3%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYINSPRKK 67 +VT+ + H +Y+R+ RLP P F Y + Sbjct: 2 KYVTETKPGH----FYYRRNGRYWGRLPGLPGSIEFATEYARLNASFADVGKTP----AV 53 Query: 68 PTTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 P T ++ Y S + +L ++ ++ D + + G F I KH+ + Sbjct: 54 PGTFDAMVEAYLASGEYRQNLKQKTKDAYRYDLDILRTRFGKFRVADIEVKHVLKMRDFF 113 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 P A + ++RV+F W + + + NP +K + K Sbjct: 114 ADKPGKANTLVRTLRVVFGWGIGRGLMKTNPADLKGVNVKKLKIGAHKPWAPAALAKFRA 173 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246 LAFE L +G R D R + + + + +KTG + + + +LA Sbjct: 174 EGQPHLVLAFELGLATGQRQGDLIRLRWDDISDGVVHVAQEKTGKELWLPVSKHLAGVLA 233 Query: 247 MTPIGKETFFINNDKQKM-NATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATA 304 P T +N+ A + F A+ T+ G++ HG+RK +A AD G + Sbjct: 234 RAPRQAVTVLVNSRGTPWIKANPLAQAFGAEITRLGLDGLVFHGLRKTAAVALADVGCST 293 Query: 305 HELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 ++ A G E YT+GAD+ RL ++ Sbjct: 294 KQIAAVTGQSD-QMVEHYTRGADQKRLAKAAVVKLER 329 >gi|307823520|ref|ZP_07653749.1| tyrosine recombinase XerD [Methylobacter tundripaludum SV96] gi|307735505|gb|EFO06353.1| tyrosine recombinase XerD [Methylobacter tundripaludum SV96] Length = 294 Score = 159 bits (401), Expect = 8e-37, Method: Composition-based stats. Identities = 53/279 (18%), Positives = 97/279 (34%), Gaps = 22/279 (7%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP-- 130 LI ++ + L+ N+ ++ S + D ++ + +E R Sbjct: 6 LIDQFLDAVWVEQGLSENTLSAYGSDLRIFAKWLKDKPILEVDGGQLSDFLEGRHKEGIG 65 Query: 131 -SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-- 187 S + L+S+R + + +R+ + I+P +E P + ++ D++ Sbjct: 66 NRSTARILSSLRRFYGYYIRENSIKIDPTALIESPHIGQPLPKSLSELDVELLLDAPEVT 125 Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKL 244 G + R E L +GLR S+ + + ++ V + + M Sbjct: 126 NALGFRDRTMLEMLYATGLRVSELVNLKFEQISFRQGVVRIIGKGNKERLVPVGEVAMGW 185 Query: 245 LAMTP----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292 L + F+ N M F K A KA +NK S H +R Sbjct: 186 LEEYMVQARKTILGERQCDYLFVTNRADSMTRQAFWHIIKRHAKKAQINKELSPHTLRHA 245 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 AT + GA + G + + YT A R RL Sbjct: 246 FATHLLNHGADLRVVQLLLGHSDLSTTQIYTHIA-RERL 283 >gi|116492850|ref|YP_804585.1| tyrosine recombinase XerD subunit [Pediococcus pentosaceus ATCC 25745] gi|116103000|gb|ABJ68143.1| tyrosine recombinase XerD subunit [Pediococcus pentosaceus ATCC 25745] Length = 295 Score = 158 bits (400), Expect = 9e-37, Method: Composition-based stats. Identities = 52/281 (18%), Positives = 100/281 (35%), Gaps = 24/281 (8%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSGVESRKH 128 LI++Y S L+ N+ IS+ + D +KI I ++ K Sbjct: 3 DLINDYLHSLKVERGLSDNTIISYRQELRHLNDYLTKEKITDIKKIDRYAILDYLDELKK 62 Query: 129 TPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 T + ++S+R FK+ + + + ++P ++++ PKR T ++++ Sbjct: 63 TGRARSSSIHTISSLRKFFKYLLIVDKIDVDPMVNIDPPKRAHHLPSVLTTAEVEKLLQV 122 Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDG 240 + G + R E + +GLR S+ + L + K + + D Sbjct: 123 PNTNEPLGMRDRTILEVMYATGLRVSELITLNLNELHLEMGLIETIGKGNKKRIIPIGDV 182 Query: 241 FMKLLAMTPI----------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288 +K L F+N + KA+ KAG+ K + H Sbjct: 183 AIKWLNRYINGPRRILLGDKKYNEIFLNQHGHPLTRQGIWKNLKAQVKKAGIEKNITPHT 242 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R AT + GA + G + + YT + Sbjct: 243 LRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITQQR 283 >gi|220927097|ref|YP_002502399.1| integrase family protein [Methylobacterium nodulans ORS 2060] gi|219951704|gb|ACL62096.1| integrase family protein [Methylobacterium nodulans ORS 2060] Length = 344 Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats. Identities = 111/335 (33%), Positives = 173/335 (51%), Gaps = 14/335 (4%) Query: 5 LRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYP-HESTFIPAYMSALTGSTPKREYINS 63 PP + +E TRHG+ ++Y R G G+RIR+ P F Y A+ G+ P + Sbjct: 3 RSRPPHLVREVTRHGRPVWYVRVGQGKRIRMREPYGSPEFWRDYRLAVEGTPPPAGKGPA 62 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 P TL WL+++Y +SA W + +R + + I + +G + I + I +G Sbjct: 63 ----PGTLSWLLAKYVESAEWSDFSAATRKQRHAIYRAIEKTAGHEPIKLIDRRAILNGR 118 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP--KRKTEGIRPWTKEDMQQ 181 + R+ P +A F+ +MR LF WAV + YVA +P V+ + G WT+E++ + Sbjct: 119 DRRRDRPHAANVFIKAMRALFSWAVDRGYVATDPTAGVKMLAGENDDVGFHTWTEEELAR 178 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 F++ W G++ RLAF+ LLY+GLR D+ R G QH++ + FSI+T +T + Sbjct: 179 FEARWPLGTRERLAFDILLYTGLRRGDAVRLGRQHVKGDAFSIRT------VTRPILPQL 232 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAG 301 +A T G F + D F WF+ A V SAHG+RK A +A+AG Sbjct: 233 AASIAATKTGDLAFIVRMDGHPFVKEGFGNWFREACRAAKVPGSAHGLRKAGARRAAEAG 292 Query: 302 ATAHELMATYGWKTVD-QAETYTKGADRIRLGIKN 335 AT +L A +GW+ ++ TYT+ AD RL + Sbjct: 293 ATEMQLNALFGWRPGSRESATYTRTADNARLAREA 327 >gi|299134375|ref|ZP_07027568.1| integrase family protein [Afipia sp. 1NLS2] gi|298591122|gb|EFI51324.1| integrase family protein [Afipia sp. 1NLS2] Length = 383 Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats. Identities = 86/354 (24%), Positives = 148/354 (41%), Gaps = 19/354 (5%) Query: 4 SLRLPPFVTKERTRHGKIIYYFR--KGHGRRIRLP-------YPHESTFIPAYMSALTGS 54 RL + + G YY R + ++IR+ F+ AY+ AL Sbjct: 3 KTRL-RYCVYDPDTAGNPRYYVRNLRKSSKKIRIRESFEAPDGTITPEFMKAYLDALASL 61 Query: 55 TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRK 113 + ++ T WL +Y +SA + ++ ++ +GD Y Sbjct: 62 DKETSSAPKASREK-TFSWLCDQYYRSAEFQRFDRLTQADKRGVLNRFCAAGAGDLPYAA 120 Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 + + R TP +A + + +R LFKWA+++ ++NP + VE+ Sbjct: 121 FRQADVERSRDKRAGTPGAADKLVKYLRALFKWAIKKRLASVNPAIGVEKINEGEGW-HA 179 Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-----FSIKTQK 228 WT +++ ++ S G++ RLA E +L G R SD+CR G QH N + + +K Sbjct: 180 WTPDEVATYRKHHSIGTKARLALELMLNVGARISDACRIGRQHESNGWLKFVAWKNRNKK 239 Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAH 287 + I + + T G T+ IN+ + + A + S+H Sbjct: 240 SRKTIECPITLELRAAIDATETGDLTYLINDLGKAFTIDGLGNKMRDWCDAADLPQCSSH 299 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 G+RK +A I A+ GATA EL A +GW ++ AETY + A + R+ Sbjct: 300 GLRKAAAVILAENGATAPELCAIFGWSKLETAETYIRQAQSRIMVSNAFSRLDE 353 >gi|323340732|ref|ZP_08080984.1| integrase/recombinase XerD [Lactobacillus ruminis ATCC 25644] gi|323091855|gb|EFZ34475.1| integrase/recombinase XerD [Lactobacillus ruminis ATCC 25644] Length = 300 Score = 158 bits (399), Expect = 1e-36, Method: Composition-based stats. Identities = 52/302 (17%), Positives = 107/302 (35%), Gaps = 33/302 (10%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSGVESR 126 L+ ++++Y L+ N+ S+ Q I + D + + I ++ Sbjct: 6 LQRILNDYLHYLKAERGLSENTVSSYGLDLQQFINYLSEHKITDLNDVDKQVIVDYLDYL 65 Query: 127 KHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + +S I+ +TS+R F+ + E + +P +S+E PK + + E+++ Sbjct: 66 MNKGKANASIIRCVTSLRKFFQSMKQDEKIQDDPMISIETPKGEKHLPEVLSIEEVEMLL 125 Query: 184 SF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELP 238 + + G + R E + +GLR S+ ++ L + K V + Sbjct: 126 NAPDTSQTLGIRNRAILELMYATGLRVSEVVNLKLEDLHLDVGIIQTMGKGRKERIVPIG 185 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAGVNK--SA 286 D + + N + K + KAG++K + Sbjct: 186 DEAIVWINNYLNDARPELCKNKRSPFLFVNFHGERLTRQGIWKNLKNEVKKAGISKNVTP 245 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346 H +R AT + GA + G + + YT + +R+S + D Sbjct: 246 HTLRHSFATHILENGADLRIVQELLGHSDISTTQIYTHISK---------KRLSKIYDES 296 Query: 347 DP 348 P Sbjct: 297 HP 298 >gi|188586285|ref|YP_001917830.1| tyrosine recombinase XerD subunit [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350972|gb|ACB85242.1| tyrosine recombinase XerD subunit [Natranaerobius thermophilus JW/NM-WN-LF] Length = 295 Score = 158 bits (399), Expect = 1e-36, Method: Composition-based stats. Identities = 47/285 (16%), Positives = 108/285 (37%), Gaps = 26/285 (9%) Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVE 124 T+ I Y + L+ N+ S+ + G ++++ HI + Sbjct: 2 EKTVHEFI--YYLNVE-RGLSENTLNSYLRDLKNFLEFLNQQGVTKWQEVKRTHIMKYLI 58 Query: 125 SRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 K ++ + + S+R F++ +++ ++ NP +E PK++ + + +++ + Sbjct: 59 FMKEKGKASATVTRNIASVRSFFQFLLQEGMISENPSTDLETPKQEKKLPEILSPQEVDK 118 Query: 182 FKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236 + +G + + E L +G+R S+ V+H+ +N I + V Sbjct: 119 LLNQPDTTDFKGKRDKAMLEVLYATGMRVSELISLNVEHVDSNNGYILCKGKGDKERIVP 178 Query: 237 LPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK-- 284 L +K ++ F+N+ ++++ F K A K G+ + Sbjct: 179 LGKMAIKSVSDYISKSRPQLRKNLSEPALFLNHHGKRLSRQGFWKILKKYAEKIGIKQKI 238 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + H +R AT + GA + G + + YT + Sbjct: 239 TPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQIYTHLTKQR 283 >gi|254476705|ref|ZP_05090091.1| phage integrase [Ruegeria sp. R11] gi|214030948|gb|EEB71783.1| phage integrase [Ruegeria sp. R11] Length = 332 Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats. Identities = 74/333 (22%), Positives = 127/333 (38%), Gaps = 15/333 (4%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 +T G+ YFR GR +RLP P+ + Y + G + P + T + Sbjct: 10 KTIKGRTYQYFR-KDGRYVRLPDDPNSEEYDREYWRLMRG--------DGPLSQRYTFEK 60 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 LI Y++S W SLA +R + + I K G D K+ I + +H A Sbjct: 61 LILSYKQSPRWESLAPRTRADYSRVLEYISDKLGSKDPTKMRRSTIIDAQMANRHRARFA 120 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193 + +LF+ ++ ++ NP + + K T K Sbjct: 121 NYIPHMLSILFEHSIDLDWQRDNPAKGISKIKTGEGHRPWPTSAITAYRKHA---NGLAL 177 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253 L FE L +G R SD R +H+++ + KT + + ++ + Sbjct: 178 LIFELALGTGQRASDLTRMEWEHIEDGGIWVTQGKTKARLWLPFTARLAAVIDASQKTSA 237 Query: 254 TFF-INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATY 311 F + ++N Q A A + S HG+R +A A+AG T ++ A Sbjct: 238 KFILADRFGNQLNYDQLQKKVMAVRRIANLTEYSLHGLRYSAAGELAEAGCTDQQIAAIT 297 Query: 312 GWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 G K++ + Y+KGA + RL + + Sbjct: 298 GHKSLSMVQKYSKGASQKRLAQEAHNLRERNKN 330 >gi|119470495|ref|ZP_01613198.1| site-specific tyrosine recombinase XerD [Alteromonadales bacterium TW-7] gi|119446196|gb|EAW27473.1| site-specific tyrosine recombinase XerD [Alteromonadales bacterium TW-7] Length = 308 Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats. Identities = 45/284 (15%), Positives = 98/284 (34%), Gaps = 20/284 (7%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRK 127 + + S + ++ N+ ++ S D+ + + +T I + Sbjct: 19 SDYLETFLDSLYLEQGVSENTLSAYRSDLDKFCQFLKGENLMTVTGHDIESYLAHRVDLG 78 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 P S + +++++ +++ VR++ + P L++ +PK + ++ +++ + + Sbjct: 79 LKPRSTARSISALKRFYQYFVREKMITDTPMLNIAQPKAGQSLPKTLSETEVEALLNAPN 138 Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFM 242 G + + E L +GLR S+ ++ + K V L + M Sbjct: 139 TEEPMGLRDKAMLELLYATGLRVSELVGLRMEQINLRQAVVFVKGKGNKERLVPLGEEAM 198 Query: 243 KLL---------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRK 291 L M + F + M F K A A V S H +R Sbjct: 199 HWLELFLKVGRAQMIKHATDFVFPSKRGVGMTRQTFWHRIKHYAILASVESPLSPHTLRH 258 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 AT + GA + G + + YT A+ + Sbjct: 259 AFATHLLNHGADLRVVQMMLGHSDLSTTQIYTHVANERLKSVHA 302 >gi|119386802|ref|YP_917857.1| phage integrase family protein [Paracoccus denitrificans PD1222] gi|119377397|gb|ABL72161.1| phage integrase family protein [Paracoccus denitrificans PD1222] Length = 335 Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats. Identities = 77/334 (23%), Positives = 132/334 (39%), Gaps = 16/334 (4%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63 LP +V + R +Y+ R G +R+ P + F Y + G Sbjct: 2 KRSLPAYVYAKGKRG--YLYFCRWGKTQRMYAA-PGTAEFAAEYALLMRG---------R 49 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 P T+K LI +Y +S W +LA N++ S+ +F + +G D + T HI Sbjct: 50 PPAPKRTIKGLIQKYMESERWPALAQNTKKSYRRHFGYLEEVAGHIDPATLRTAHIYEMR 109 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 ++ + TP+ A + + ++ L VR ++ NP VE+ K PW ++ F+ Sbjct: 110 DALRDTPTDANRKIGTLSTLLAHGVRIGWLDRNPAEGVEKLKGLRPPREPWPDTKIKAFR 169 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 P L FE LL +G R D + +++ ++ QKTG I V D Sbjct: 170 --GEAAPLPLLIFEMLLGTGQRIGDVLKMRWDDIEDGGIWVRQQKTGAGIFVPFTDELAA 227 Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSATISADA-G 301 +L TP +T + + + + K + H +R +A A G Sbjct: 228 ILEQTPRQGDTIIAQPNGRPCSYSFAHKLVTEVRVKIDAMAWDIHALRHSAAAEIASLPG 287 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 + +MA G + A Y++ AD + Sbjct: 288 MSIEHVMAITGHSSEQMARHYSRKADMRAKAREA 321 >gi|315127593|ref|YP_004069596.1| site-specific tyrosine recombinase XerD [Pseudoalteromonas sp. SM9913] gi|315016107|gb|ADT69445.1| site-specific tyrosine recombinase XerD [Pseudoalteromonas sp. SM9913] Length = 308 Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats. Identities = 43/284 (15%), Positives = 100/284 (35%), Gaps = 20/284 (7%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRK 127 + + S + ++ N+ ++ S D+ + +T+ + + Sbjct: 19 SDFLETFLDSLYLEQGVSENTLSAYRSDLDKFCQFLKGESLMTVTSLDVESYLAHRVDLG 78 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 P S + +++++ +++ VR++ ++ +P +++ +PK + ++ +++ S + Sbjct: 79 LKPRSTARSISALKRFYQYFVREKIISDSPMVNIAQPKAGQSLPKTLSEAEVEALLSAPN 138 Query: 188 E----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFM 242 G + + E L +GLR ++ ++ + K V L + M Sbjct: 139 IEEPMGLRDKAMLELLYATGLRVTELVGLRMEQINLRQAVVFVKGKGNKERLVPLGEEAM 198 Query: 243 KLL---------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRK 291 L M + F + M F K A A V S H +R Sbjct: 199 YWLEQFLKLGRAQMIKHATDFVFPSKRGVGMTRQTFWHRIKHYAILASVESPLSPHTLRH 258 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 AT + GA + G + + YT A+ + Sbjct: 259 AFATHLLNHGADLRVVQMMLGHSDLSTTQIYTHVANERLKSVHA 302 >gi|326385719|ref|ZP_08207348.1| integrase family protein [Novosphingobium nitrogenifigens DSM 19370] gi|326209698|gb|EGD60486.1| integrase family protein [Novosphingobium nitrogenifigens DSM 19370] Length = 359 Score = 157 bits (396), Expect = 3e-36, Method: Composition-based stats. Identities = 78/339 (23%), Positives = 144/339 (42%), Gaps = 3/339 (0%) Query: 4 SLR-LPPFVTKERTRHGKIIYYFRKGHG-RRIRLPYPHESTFIPAYMSALTGSTPKREYI 61 R LP +V+ R RHGK Y FR+ + + P F Y + LT S + Sbjct: 2 KRRWLPKWVSGFRDRHGKARYRFRRKGQAQYLFKHAPGTEEFRQEYQACLTASEAPKIQP 61 Query: 62 NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121 + + KP T LI Y +S + + +++ + ++ K G + T+H+ + Sbjct: 62 GADKIKPGTFDDLIVRYYRSPDFLDPSPRTQVVYRGVIERWRAKYGSGRVADLETRHVAA 121 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + +SA + L +A RQ + NP L+ + + G WT+ ++ Sbjct: 122 MMAEMLPHRTSANMLRKRLSALMAFANRQGEIDKNPVLATKPYRIDGGGFHTWTEPEIAL 181 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 +++ G+ RL F+ LL++G R D G +Q+ I +KT +++ + Sbjct: 182 YEAHHPTGTMARLMFDLLLWTGQRGGDVRLLGPNAIQDKRLVITQEKTKVTVSLPILPAL 241 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300 + + T G++TF + + F F+ AG+ SAHG+RK +A A+A Sbjct: 242 AQSILATQTGEDTFLVTTHGKTFTRKGFGNKFRDWCDAAGLPHCSAHGLRKAAARRFAEA 301 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 + ++ A G T + YT D+ + + + Sbjct: 302 RCSNQQIKAWTGHTTDSEIARYTAAVDQQLMSDAAAEML 340 >gi|160892553|ref|ZP_02073343.1| hypothetical protein CLOL250_00082 [Clostridium sp. L2-50] gi|156865594|gb|EDO59025.1| hypothetical protein CLOL250_00082 [Clostridium sp. L2-50] Length = 292 Score = 156 bits (395), Expect = 4e-36, Method: Composition-based stats. Identities = 46/282 (16%), Positives = 99/282 (35%), Gaps = 22/282 (7%) Query: 74 LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGV---ESR 126 I +Y + N+ S+ + G D R I +I + + E Sbjct: 4 YIEKYVDYLKNIKKSSENTVASYRRDLVKFSDFYRENGTEDIRSINETNINTYILYLEKN 63 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + ++ + + S++ F + R++ + +P ++++ PK + + T E++ + Sbjct: 64 GKSMATVSRSIASIKSFFGFLFREKILMDDPSVNIKPPKIEKKMPDILTIEEVNRLLDQP 123 Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242 + S + R E L +G+R S+ + + + I+ + + D Sbjct: 124 GDQSPKEIRDRAMLELLYATGIRVSELVTLKITDVNLKMGYIECHDLRKSRIIPIEDSAQ 183 Query: 243 KLLAMTPIGKETFFI--------NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292 + L N M F K A KAG++K + H +R Sbjct: 184 RALDNYISNVRGDMCKNSEYLFSNCKGTPMTRQGFWKIIKVYADKAGIDKDITPHMIRHS 243 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334 A+ + GA + G + + Y + + RL + Sbjct: 244 FASHLVNNGADLKAVQEMLGHADISTTQIYL-NSKQSRLKEE 284 >gi|83945755|ref|ZP_00958099.1| phage integrase [Oceanicaulis alexandrii HTCC2633] gi|83850845|gb|EAP88706.1| phage integrase [Oceanicaulis alexandrii HTCC2633] Length = 310 Score = 156 bits (395), Expect = 4e-36, Method: Composition-based stats. Identities = 80/303 (26%), Positives = 137/303 (45%), Gaps = 8/303 (2%) Query: 44 IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103 + AY AL + P + + T+ LI +Y S+ + +L +++ ++ S + Sbjct: 1 MAAYAQALANT-PLETDLAKSTARKGTIDRLIEDYYHSSAFDTLETSTQRTYRSSLEPFR 59 Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163 G R + T+H+ + + P++A + L ++ +F AVRQE NP ++ Sbjct: 60 NTYGHMPVRTVQTRHLERILFDLREKPTAANKLLKRLKTIFDLAVRQEIRHDNPAKPIKA 119 Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223 K ++G WT+ +++ FK+ + GS+PRLA LL +G R SD R G Q + + Sbjct: 120 RKVDSDGFHAWTEAEIEAFKTAYPSGSKPRLALALLLCTGQRGSDVARMGPQDIVDIQGG 179 Query: 224 IK-----TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278 + QKT T + + + LA F + + F WF +A Sbjct: 180 SRAIRVKQQKTKTPLLIPILPELAVELAARNGKHMVFLTTEYGKAFSVKGFQQWFAERAK 239 Query: 279 KA--GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 A +AHG+RK A A+AGAT H + + G KT+ + YT G D+ +L Sbjct: 240 AATGNPKCTAHGLRKACAYRLAEAGATVHMIQSITGHKTLAEVARYTAGRDQFKLASAAQ 299 Query: 337 RRI 339 + Sbjct: 300 ALL 302 >gi|254454844|ref|ZP_05068281.1| phage integrase [Octadecabacter antarcticus 238] gi|198269250|gb|EDY93520.1| phage integrase [Octadecabacter antarcticus 238] Length = 395 Score = 156 bits (394), Expect = 5e-36, Method: Composition-based stats. Identities = 52/351 (14%), Positives = 100/351 (28%), Gaps = 20/351 (5%) Query: 14 ERTRHGKIIYYFRKGHG---RRIRLPYPHESTFIPAYMSALT-----GSTPKREYINSPR 65 G Y + G RRI L T A + A + Sbjct: 32 RIMPSGAKTYQAQYRKGGRTRRISLGRHGTLTVEQARLLAKEVLGDVAKGENPAEDIAQH 91 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSGVE 124 +K T+ L + ++ +++ + D I G F + K + Sbjct: 92 RKAPTVAALCERFFQAHVMERCKPSTQGEYRRAIDMFINPALGSFKLVDLERKDVAELHH 151 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + P A + L + +F A PK + + + Q Sbjct: 152 KFRDKPYQANRTLGVLSKMFNLAEIWGLRPDGSNPCRHVPKYREHKRERYLSQVELQRLG 211 Query: 185 FWSEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 AF L+ +G R + + + + KTG Sbjct: 212 NVLADAELNGTETPHIIAAFRLLILTGCRLGEIQTLQWGFITDQGMELPDTKTGARRIPL 271 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSAT 295 L + + + I +AT F ++ +AG+ H +R A+ Sbjct: 272 PSAARAVLSTLARVDGNPYVIVGKVAGKHATDFQHPWRRIRERAGLTGVRIHDLRHTYAS 331 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADR--IRLGIKNSRRISSVVD 344 + +G + G + Y AD + +N+ R++++V Sbjct: 332 NAVSSGMPIQMVGRLLGHTQIQTTMRYAHLADDPVKKAAEENAERLNALVG 382 >gi|77359472|ref|YP_339047.1| site-specific tyrosine recombinase XerD [Pseudoalteromonas haloplanktis TAC125] gi|76874383|emb|CAI85604.1| site-specific tyrosine recombinase XerD [Pseudoalteromonas haloplanktis TAC125] Length = 308 Score = 156 bits (394), Expect = 5e-36, Method: Composition-based stats. Identities = 47/302 (15%), Positives = 106/302 (35%), Gaps = 24/302 (7%) Query: 54 STPKREYINSPRKKPTTLKWLIS-EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR 112 + E +P+ L+ + Y + ++ N+ ++ S D+ + + Sbjct: 5 ADDFSEPSTAPKSNNDYLETFLDCLYLE----QGVSENTLSAYRSDLDKFCQFLKGKNLM 60 Query: 113 KITTKHIR---SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169 +T + + P S + +++++ +++ VR++ ++ +P L++ +PK Sbjct: 61 TVTGLDVESYLAHRVDLGLKPRSTARSISALKRFYQYFVREKLISDSPMLNIAQPKAGQS 120 Query: 170 GIRPWTKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSI 224 + ++ +++ S + G + + E L +GLR S+ ++ + Sbjct: 121 LPKTLSEAEVEALLSAPNTDEPMGLRDKAMLELLYATGLRVSELVGLRIEQINLRQAVVF 180 Query: 225 KTQKTGTIITVELPDGFMKLL---------AMTPIGKETFFINNDKQKMNATQFSIWFKA 275 K V L + M L M + F + M F K Sbjct: 181 VKGKGNKERLVPLGEEAMYWLEQFLKVGRAQMIKHATDFVFPSKRGVGMTRQTFWHRVKH 240 Query: 276 KATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 A A + S H +R AT + GA + G + + YT A+ + Sbjct: 241 YAILASIESSLSPHTLRHAFATHLLNHGADLRVVQMMLGHSDLSTTQIYTHVANERLKSV 300 Query: 334 KN 335 Sbjct: 301 HA 302 >gi|302879928|ref|YP_003848492.1| tyrosine recombinase XerD [Gallionella capsiferriformans ES-2] gi|302582717|gb|ADL56728.1| tyrosine recombinase XerD [Gallionella capsiferriformans ES-2] Length = 305 Score = 156 bits (393), Expect = 6e-36, Method: Composition-based stats. Identities = 62/299 (20%), Positives = 116/299 (38%), Gaps = 26/299 (8%) Query: 72 KWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKI---TTKHIRSGVESR- 126 L+ E+ S L+ N+ S+ ++ + + + T ++ + Sbjct: 4 AELLDEFADSLWLEDGLSRNTLDSYRRDLNKFSDWLRNQRGQDLLQTTHADLQGYIADLF 63 Query: 127 ---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 K PSSA + L+S++ LF++ +RQ +AI+P L ++ PK + T++D++Q Sbjct: 64 IVQKAKPSSAGRNLSSLKRLFRYLLRQGKIAIDPTLKIDTPKLPRNLPQSLTEQDVEQLL 123 Query: 184 SFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELP 238 + G + R FE L +GLR S+ G+ L ++ ++ V L Sbjct: 124 AAPDIETSLGLRDRTMFEVLYATGLRVSELVSLGIGQLDMDMGVVRVAGKGNKERLVPLG 183 Query: 239 DGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286 + + L + F+ M F K A + G++K S Sbjct: 184 EVALDWLQSYLDDSRGVLLAGRISDDLFVTARGSGMTRQMFWYLIKKHAKQGGLDKPLSP 243 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345 H +R AT + GA + G + + YT A R RL +++ + Sbjct: 244 HTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVA-RERLKQLHAKHHPRGSPA 301 >gi|217963893|ref|YP_002349571.1| tyrosine recombinase XerD [Listeria monocytogenes HCC23] gi|290892115|ref|ZP_06555111.1| integrase/recombinase XerD [Listeria monocytogenes FSL J2-071] gi|217333163|gb|ACK38957.1| tyrosine recombinase XerD [Listeria monocytogenes HCC23] gi|290558238|gb|EFD91756.1| integrase/recombinase XerD [Listeria monocytogenes FSL J2-071] gi|307571537|emb|CAR84716.1| integrase/recombinase [Listeria monocytogenes L99] Length = 297 Score = 156 bits (393), Expect = 6e-36, Method: Composition-based stats. Identities = 45/279 (16%), Positives = 95/279 (34%), Gaps = 26/279 (9%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHI---RSGVE 124 LI ++ L+ N+ ++E + G D + I + Sbjct: 3 DLIEDFLHFLIVERGLSANTIKAYERDLRYFVSYMDVAKGLTDPNTLERSDIVGFMAFAR 62 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK- 183 +P S +++ S+R F + + ++ +P + +E PK+ + +D+++ Sbjct: 63 QEGKSPRSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQGLPKVLNLDDVEKLLS 122 Query: 184 ---SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVE--- 236 + G + + E L +GLR ++ + L + F K + Sbjct: 123 SSDTSTPLGLRDQAMMEILYATGLRVTELVSLKMDDLHLHMGFIQTIGKGDKERIIPLGK 182 Query: 237 --------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286 + L + F+N+ Q + F K A ++G+ K + Sbjct: 183 TATTVLEKYLEEARPKLRRPKYRNDFVFLNHHGQGLTRQGFWKILKGIAKESGIEKPITP 242 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 H +R AT + GA + G + + YT Sbjct: 243 HTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHV 281 >gi|296112007|ref|YP_003622389.1| integrase/recombinase [Leuconostoc kimchii IMSNU 11154] gi|295833539|gb|ADG41420.1| integrase/recombinase [Leuconostoc kimchii IMSNU 11154] Length = 298 Score = 156 bits (393), Expect = 7e-36, Method: Composition-based stats. Identities = 48/301 (15%), Positives = 102/301 (33%), Gaps = 32/301 (10%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRK 127 + I++Y L+ N+ S++ Q + + + I + + + Sbjct: 5 IDNAIADYLHYIRIERGLSDNTIKSYQQDLKQFSVYMTAENLNLNAVDHVVILTWLNQLR 64 Query: 128 ---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + +S I+ +TS+R F + +++ + NP V+ PK+ + ++ Sbjct: 65 ELNKSNNSVIRMVTSLRKFFGYLLQENVIRHNPMSDVKPPKKAEHLPAVLSVAEIDALLQ 124 Query: 185 FWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPD 239 +E G + R E + +GLR S+ + L + K + + + Sbjct: 125 VPTEKTALGLRNRALIEVMYATGLRVSELVNLKMSDLHLQLGLIQTIGKGDKERIIPIGE 184 Query: 240 GFMKLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAGVNK--SAH 287 + L + + + K + AG++K S H Sbjct: 185 IATEWLERYFSHSRLTLLKDKVSPFVFLNDRGTQLSRQGVWKIIKNLVSAAGIDKDVSPH 244 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347 +R AT + GA + G + + YT + +R+S V D+ Sbjct: 245 TLRHSFATHILENGADLRIVQELLGHADISTTQIYTHISK---------KRLSEVYDAFH 295 Query: 348 P 348 P Sbjct: 296 P 296 >gi|99081169|ref|YP_613323.1| phage integrase [Ruegeria sp. TM1040] gi|99037449|gb|ABF64061.1| Tyrosine recombinase xerD [Ruegeria sp. TM1040] Length = 333 Score = 155 bits (392), Expect = 7e-36, Method: Composition-based stats. Identities = 69/339 (20%), Positives = 126/339 (37%), Gaps = 11/339 (3%) Query: 1 MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60 M L +VT + + G++ YYFR+G + P F AY + +G Sbjct: 1 MVKKLER-KYVTTKTVK-GRVYYYFRRGETYQRLPNDPDSQEFDDAYWAIRSG------- 51 Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 + +K TT + LI Y ++ + + + + I K+G D+ K+ + + Sbjct: 52 -RAKKKAKTTFEALIVSYYQTPEFRDRKPRVQQEYRRTLELIREKNGPKDFTKLRRRDVI 110 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + ++ T A + + +L + A+ E++ NP V++ P K Sbjct: 111 AARDAYADTWRKANAMVEMISILSRHAIDLEWITANPASGVKKLTGGEYEPWPDAKLQAF 170 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 + + A+ + +G R D H ++ +KT + V P Sbjct: 171 EAFCKKHDLEWELTAYMLGVGTGQRIGDVVGMEWAHYDGQFIAVVQEKTAARLWVACPTF 230 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSATISAD 299 + L P + + + A K G V HG R +A A+ Sbjct: 231 LKRYLDGLPRRGRFIIAQSLHKGVAKRTIQQRVMAVREKIGAVGYVIHGWRYTAAVHLAE 290 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338 AGA+ E+ A G KT++ + Y A++ RL R Sbjct: 291 AGASDSEIQAVTGHKTLEMVKKYRSQANQKRLSKSAQAR 329 >gi|254467274|ref|ZP_05080685.1| phage integrase [Rhodobacterales bacterium Y4I] gi|206688182|gb|EDZ48664.1| phage integrase [Rhodobacterales bacterium Y4I] Length = 392 Score = 155 bits (392), Expect = 8e-36, Method: Composition-based stats. Identities = 55/351 (15%), Positives = 99/351 (28%), Gaps = 20/351 (5%) Query: 14 ERTRHGKIIYYFRKGHG---RRIRLPYPHESTFIPAYMSALT-----GSTPKREYINSPR 65 G Y + G RR+ + + T A A S Sbjct: 32 RVMPSGAKTYQAQYRKGGRTRRVSVGRHGKITVDEARKLAKEIMGQVAKGENPAEEISQH 91 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSGVE 124 +K T+ L + ++ +++ + D I G F + + I Sbjct: 92 RKAPTVAALCERFFEAHAKERCKPSTQKEYRRAIDLFIVPALGSFKVVDVERRDIAELHH 151 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK- 183 + P A + L + +F A PK + + + Q Sbjct: 152 KFRDKPYQANRTLGVLSKMFNLAEIWGLRPDGSNPCRHVPKYREVKRERFLSQPELQRLG 211 Query: 184 -------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 SE AF L+ +G R + ++ N + KTG Sbjct: 212 QVLSEVEREGSETPHMVAAFRLLILTGCRLGEIQTLKWDYITANGMELPDSKTGARRIPL 271 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSAT 295 L + + I AT ++ +AG+ H +R A+ Sbjct: 272 PQPARDVLARLPRSPGNPYVIEGKLPGQYATDLQHPWRRIRDRAGLAGVRIHDLRHTYAS 331 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADR--IRLGIKNSRRISSVVD 344 + AG + G + Y AD + +N+ R+ S+V Sbjct: 332 NAVSAGMPIQMVGRLLGHTQIQTTMRYAHLADDPVRQAAEENAARLGSLVG 382 >gi|170017033|ref|YP_001727952.1| site-specific recombinase XerD [Leuconostoc citreum KM20] gi|169803890|gb|ACA82508.1| Site-specific recombinase XerD [Leuconostoc citreum KM20] Length = 298 Score = 155 bits (391), Expect = 9e-36, Method: Composition-based stats. Identities = 51/301 (16%), Positives = 101/301 (33%), Gaps = 32/301 (10%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRK 127 ++ IS+Y L+ N+ S+ +Q ++ + S + + Sbjct: 5 IEDAISDYIHYIRIERGLSENTITSYRQDLNQFGMYLSQEHLLLGEVDHIVVLSWLNRLR 64 Query: 128 ---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK- 183 + SS I+ +TS+R F + ++ + NP V+ PK+ + E++ Sbjct: 65 TNGKSNSSVIRMVTSLRRFFGYLTQENMITHNPMSHVKPPKKAAHLPAVLSFEEIDTLLG 124 Query: 184 ---SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPD 239 G + R E + +GLR S+ + L + K + + + Sbjct: 125 VPVPSTPLGMRNRTLLEVMYATGLRVSELVNLKMSDLHIQLGLIQTLGKGDKERIIPIGE 184 Query: 240 GFMKLLAMTP----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287 + L F+N+ ++ K +AG+ + S H Sbjct: 185 VAVDWLERYFAGARLTLLKAQESPYVFVNDRGGQLTRQGVWKIIKKLVLEAGITKDVSPH 244 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347 +R AT + GA + G + + YT + +R+S V D Sbjct: 245 TLRHSFATHILENGADLRIVQELLGHADISTTQIYTHISK---------KRLSEVYDEYH 295 Query: 348 P 348 P Sbjct: 296 P 296 >gi|260583968|ref|ZP_05851716.1| tyrosine recombinase XerD [Granulicatella elegans ATCC 700633] gi|260158594|gb|EEW93662.1| tyrosine recombinase XerD [Granulicatella elegans ATCC 700633] Length = 297 Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats. Identities = 49/279 (17%), Positives = 100/279 (35%), Gaps = 24/279 (8%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSGVESRKHTP- 130 + + S L+ N+ +S++ + + + D++++ I ++ K Sbjct: 5 LDYFVDSLAIQGLSQNTVMSYQRDLMKFYQFLKEQQIRDWKEVDYSLIVLFLQDLKQDGY 64 Query: 131 --SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187 SS + ++ ++ FK+ +++ V NP ++ PK+ + T +++ Q + Sbjct: 65 ATSSTSRMISCLKKFFKFLQQEQLVETNPVQPLKVPKKSKMLPKALTVDEVTQVLNSCDT 124 Query: 188 ---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------------NNIFSIKTQKTGTI 232 G + + E L +G+R S+ + L N I + T Sbjct: 125 STVLGLRDKAMLELLYATGMRVSELITLKLSDLHLELGFLQTIGKGNKQRIIPIGQAATN 184 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 +L E F+N+ F K +AGV+K S H +R Sbjct: 185 WVQHYLTYARVVLEQESNPVEYLFLNHRGNGFTRQGFWKNLKKIVQEAGVHKDVSPHTLR 244 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT +AGA + G + + YT + Sbjct: 245 HSFATHILEAGADLRIVQELLGHSDISTTQIYTHLTNER 283 >gi|239636836|ref|ZP_04677835.1| tyrosine recombinase XerD [Staphylococcus warneri L37603] gi|239597510|gb|EEQ80008.1| tyrosine recombinase XerD [Staphylococcus warneri L37603] Length = 295 Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats. Identities = 50/287 (17%), Positives = 104/287 (36%), Gaps = 25/287 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESR--- 126 +I EY K L+VN+ ++ ++ I + I+ + Sbjct: 4 IIEEYLKFIQIEKGLSVNTIGAYRRDLNKYKEYLDLQKISNIDFVDRQTIQECLGYLIDQ 63 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + S +F++++R ++A+R++Y A +P + +E PK + + +++ + Sbjct: 64 GQSSKSIARFISTIRSFHQFALREKYAAKDPTVLIETPKYEKKLPDVLEVDEVIDLLNAP 123 Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 G + R E L +G+R S+ + V+ + + ++ V L D Sbjct: 124 DLNKNNGYRDRTMLELLYATGMRVSEVIQIEVEDVNLMMGFVRVFGKGDKERIVPLSDTV 183 Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289 + L F+N + ++ K KA +NK+ H + Sbjct: 184 IDYLTTYIETVRPQLLKQTVTNVLFLNMHGKPLSRQGIWKMMKQNGLKANINKTLTPHTL 243 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKN 335 R AT + GA + G + + YT + +IR Sbjct: 244 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQ 290 >gi|254559697|ref|YP_003066792.1| phage integrase [Methylobacterium extorquens DM4] gi|254266975|emb|CAX22775.1| phage integrase [Methylobacterium extorquens DM4] Length = 320 Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats. Identities = 79/316 (25%), Positives = 138/316 (43%), Gaps = 12/316 (3%) Query: 44 IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103 + Y L G P+R+ + P P + L Y S + SL V++R D+I Sbjct: 1 MNKYYDCLDGKIPERKSRSVP-AAPGSFAALRLAYLGSPEFKSLDVSTRAWQRRALDEIS 59 Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163 G + +H+R+ ++ TP++A L +++ LFKWA + +P +V+ Sbjct: 60 EAHGTKRVAMMQARHVRTLRNGKRETPAAANTMLKALKALFKWANENGRASSDPTRNVDF 119 Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223 K +G PW+ +++ +++ G+ RLA E LLY+ R D R G +L F Sbjct: 120 LKYAKKGFHPWSPSEVEAYEAAHLVGTTARLALELLLYTAGRREDVVRFGPHNLAAGRFR 179 Query: 224 IKTQKTGTI----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279 K I + + + +A F + + + F FK + Sbjct: 180 FVQGKNEDRAPVLIDIPVHPDLAEAIAAAQPSGAVFILTHYGRPFTPNGFGNRFKKWCIQ 239 Query: 280 AGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338 AG+ SAHG RK +A A GATAH++M+ G +++ + E YT+ A R ++ Sbjct: 240 AGLPHCSAHGCRKAAAARLATRGATAHQIMSVTGHQSLAEVERYTRSALRAQMADTAMAL 299 Query: 339 I------SSVVDSDDP 348 + S + ++ P Sbjct: 300 LPDRRSAGSTIPANRP 315 >gi|330686041|gb|EGG97664.1| tyrosine recombinase XerD [Staphylococcus epidermidis VCU121] Length = 295 Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats. Identities = 50/287 (17%), Positives = 105/287 (36%), Gaps = 25/287 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESR--- 126 +I EY K L+VN+ ++ ++ I + I+ + Sbjct: 4 IIEEYLKFIQIEKGLSVNTIGAYRRDLNKYKEYLTLQKISNIDFVDRQTIQECLGYLIDQ 63 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + S +F++++R ++A+R++Y A +P + +E PK + + +++ + + Sbjct: 64 GQSSKSIARFISTIRSFHQFALREKYAAKDPTVLIETPKYEKKLPDVLEVDEVIELLNAP 123 Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 G + R E L +G+R S+ + V+ + + ++ V L D Sbjct: 124 DLNKNNGYRDRTMLELLYATGMRVSEVIQIEVEDVNLMMGFVRVFGKGDKERIVPLGDTV 183 Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289 + L F+N + ++ K KA +NK+ H + Sbjct: 184 IDYLTTYIETVRPQLLKQTVTNVLFLNMHGKPLSRQGIWKMIKQNGLKANINKTLTPHTL 243 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKN 335 R AT + GA + G + + YT + +IR Sbjct: 244 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQ 290 >gi|116629539|ref|YP_814711.1| integrase [Lactobacillus gasseri ATCC 33323] gi|238852689|ref|ZP_04643099.1| tyrosine recombinase XerD [Lactobacillus gasseri 202-4] gi|311110818|ref|ZP_07712215.1| tyrosine recombinase XerD [Lactobacillus gasseri MV-22] gi|116095121|gb|ABJ60273.1| tyrosine recombinase XerD subunit [Lactobacillus gasseri ATCC 33323] gi|238834835|gb|EEQ27062.1| tyrosine recombinase XerD [Lactobacillus gasseri 202-4] gi|311065972|gb|EFQ46312.1| tyrosine recombinase XerD [Lactobacillus gasseri MV-22] Length = 302 Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats. Identities = 44/282 (15%), Positives = 105/282 (37%), Gaps = 25/282 (8%) Query: 67 KPTTLKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIR 120 + T+K + +Y + S L+ N+ IS+ + ++ + D + + Sbjct: 3 QTQTMKDNLEDYLRFSQVERGLSPNTIISYRTDLEEYLDYLQDQNETSWEVDYLVVDAFL 62 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + + + +S + ++S+R ++W +RQ+ + +P + ++ PK + ++E++ Sbjct: 63 ATQKDKGKATTSISRMISSLRKFYQWLLRQDIIERDPLVKIDSPKSERRLPTALSEEEVD 122 Query: 181 QFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITV 235 + + + + R E L +G+R S+ + ++ I+ K V Sbjct: 123 KLLAAPDTNTPLGIRDRAMLEVLYATGMRVSELINLRTGDIHADLKIIRVLGKGSKERLV 182 Query: 236 ELPDGFMKLLAMTP------------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 + + + L + F+NN ++ K G+ Sbjct: 183 PITEVALSWLEKYQTDVRDAQVLKSGQFTDVIFLNNHGHQLTRQAVWQKIKKYCQLIGIT 242 Query: 284 K--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 K + H +R AT + GA + G + + YT Sbjct: 243 KNVTPHTLRHTFATHLLENGADLRVVQEILGHSDITTTQIYT 284 >gi|331701395|ref|YP_004398354.1| Tyrosine recombinase xerC [Lactobacillus buchneri NRRL B-30929] gi|329128738|gb|AEB73291.1| Tyrosine recombinase xerC [Lactobacillus buchneri NRRL B-30929] Length = 296 Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats. Identities = 43/276 (15%), Positives = 87/276 (31%), Gaps = 24/276 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHTPS 131 I +Y L+ N+ S+ + I I +E+ + Sbjct: 6 IEDYLHYLRVERGLSDNTIKSYRQDLQEAGAFFDKHAKSIADIDQFVILDYLETLQRQHK 65 Query: 132 SAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----QFKS 184 + + ++++R F++ V+ + +P L V+ PK+ T + + Sbjct: 66 ARNTVIRVVSTLRRFFQYLVQFHVIVDDPMLKVDSPKKAQTLPDVLTVAQVNQLLSMPDT 125 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMK 243 G + R E L +GLR S+ + L + K + + D + Sbjct: 126 HKKLGLRDRAILETLYATGLRVSELVNLKLGDLHLPMNLLQTIGKGDKERIIPISDVAID 185 Query: 244 LLAMTPIGKETF-----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 L F+N ++ K +AG+ + + H +R Sbjct: 186 WLNQYIQSTRVQLLSGRPNSEFLFLNAHGHQLTRQAIWQMIKKYVNQAGIKRHVTPHTLR 245 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 AT + GA + G + + YT + Sbjct: 246 HSFATHLLENGADLRIVQELLGHSDISTTQIYTHVS 281 >gi|327398928|ref|YP_004339797.1| Tyrosine recombinase xerC [Hippea maritima DSM 10411] gi|327181557|gb|AEA33738.1| Tyrosine recombinase xerC [Hippea maritima DSM 10411] Length = 279 Score = 154 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 45/270 (16%), Positives = 90/270 (33%), Gaps = 16/270 (5%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 + LI + S + N+ S+ + + D + + + + P Sbjct: 3 IDRLIDRFLFSLKVRGFSDNTISSYANDLSLVSNFFKDKMLDDNGVGNFVLWLSQKNYKP 62 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 SS + L+S R K+ ++ + S++ K + R E +++ G Sbjct: 63 SSFNRKLSSFRSFLKFLTKEG-LCNIDVSSIKNKKYSRKVPRYIPFETIKKVMEDKKTG- 120 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTP 249 L E + SGLR S+ V + + I+ + V + +G +K L Sbjct: 121 ---LFVELIYSSGLRVSELVNLRVSDIIFDAGFIRVRGKGSKERLVPVGNGTLKRLKSYI 177 Query: 250 IGKETFFINN----------DKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISAD 299 N+ + + K K G++ H +R AT + Sbjct: 178 ENARKNIKNSSNNDYLFLSSWGRPFSRQGLWKLIKRSFKKEGIDVHPHMLRHMFATHMIE 237 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRI 329 GA + G +++ + YT D+ Sbjct: 238 NGANIRAVQEMLGHRSITTTQIYTDITDKA 267 >gi|300361568|ref|ZP_07057745.1| tyrosine recombinase XerD [Lactobacillus gasseri JV-V03] gi|300354187|gb|EFJ70058.1| tyrosine recombinase XerD [Lactobacillus gasseri JV-V03] Length = 302 Score = 154 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 44/282 (15%), Positives = 106/282 (37%), Gaps = 25/282 (8%) Query: 67 KPTTLKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIR 120 + T+K + +Y + S L+ N+ IS+ + ++ + D + + Sbjct: 3 QTQTMKDNLEDYLRFSQVERGLSPNTIISYRTDLEEYLDYLQDQNETSWEVDYLVVDAFL 62 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + + + +S + ++S+R ++W +RQ+ + +P + ++ PK + ++E++ Sbjct: 63 AAQKDKGKATTSISRMISSLRKFYQWLLRQDIIERDPLIKIDSPKSERRLPTALSEEEVD 122 Query: 181 QFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITV 235 + + + + R E L +G+R S+ + +++ I+ K V Sbjct: 123 KLLAAPDTNTPLGIRDRAMLELLYATGMRVSELINLRTGDIHSDLKIIRVLGKGSKERLV 182 Query: 236 ELPDGFMKLLAMTP------------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 + + + L + F+NN ++ K G+ Sbjct: 183 PITEVALSWLEKYQKDVRDAQVLKSGQFTDVIFLNNHGHQLTRQAVWQKIKKYCQLVGIT 242 Query: 284 K--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 K + H +R AT + GA + G + + YT Sbjct: 243 KNVTPHTLRHTFATHLLENGADLRVVQEILGHSDITTTQIYT 284 >gi|299821615|ref|ZP_07053503.1| tyrosine recombinase XerD [Listeria grayi DSM 20601] gi|299817280|gb|EFI84516.1| tyrosine recombinase XerD [Listeria grayi DSM 20601] Length = 296 Score = 154 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 47/277 (16%), Positives = 96/277 (34%), Gaps = 25/277 (9%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVE---SR 126 + ++ LA N+ +++ G D IT + + + Sbjct: 4 YVEDFLHYLVVEKGLAANTIQAYKRDLRYFDSFLEIEGITDPNSITRGTVVAFIAFARDA 63 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 +P + ++L S+R F + + + + +P + +E PK+ + E++++ + Sbjct: 64 DKSPRTIARYLASLRSFFHFLLHDQKMDHDPMIQIETPKQTKALPKVLHLEEVEKLLAAP 123 Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGF 241 G + + E L +GLR S+ + L + F K + L Sbjct: 124 DPNSILGLRDQAMLEILYATGLRVSELIHLKLDDLHLHMGFIQTIGKGDKERIIPLGHTA 183 Query: 242 MKLLAMT-----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288 +L + F+N+ + F K A KAG++K + H Sbjct: 184 TAVLTKYLEEARPKLRKPKYRNDYVFLNHHGGGLTRQGFWKLLKQLAQKAGIDKPITPHT 243 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 +R AT + GA + G + + YT Sbjct: 244 LRHSFATHLLENGADLRSVQELLGHADISTTQIYTHV 280 >gi|254360931|ref|ZP_04977077.1| site-specific recombinase XerD [Mannheimia haemolytica PHL213] gi|261493842|ref|ZP_05990354.1| site-specific recombinase XerD [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261495108|ref|ZP_05991572.1| site-specific recombinase XerD [Mannheimia haemolytica serotype A2 str. OVINE] gi|153092410|gb|EDN73473.1| site-specific recombinase XerD [Mannheimia haemolytica PHL213] gi|261309178|gb|EEY10417.1| site-specific recombinase XerD [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310444|gb|EEY11635.1| site-specific recombinase XerD [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 297 Score = 154 bits (388), Expect = 3e-35, Method: Composition-based stats. Identities = 43/284 (15%), Positives = 101/284 (35%), Gaps = 24/284 (8%) Query: 71 LKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVES 125 L +I ++ + L+ N+ S+ S ++ + I + Sbjct: 4 LDPIIEQFLDTLWQEHGLSENTVASYRSDLERFSDYFSEPKAFLSLDHIDLQGFLGERLE 63 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + + +S+ + L+ +R F++ + Y +P L++ PKR + +++ + Sbjct: 64 QGYKATSSARMLSCLRKFFRFLCLEHYRQDDPTLTLSSPKRGASLPKSLSEDQVMDLLDA 123 Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTII------- 233 + + + E L +GLR ++ + ++ ++ Sbjct: 124 PNTLDPIELRDKAMLELLYATGLRVTELVSLSMDNISLKQGVVRIIGKGDKERLVPLGEE 183 Query: 234 ---TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287 ++ + + + + + F + Q+M F K A AG++ S H Sbjct: 184 ANYWIQEFFQYGRPILLNNQQSDVVFPSRRGQQMTRQTFWHRIKHYAVLAGIDADKLSPH 243 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +R AT + GA + G + + YT+ A + RL Sbjct: 244 VLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTQVA-KARL 286 >gi|291280177|ref|YP_003497012.1| tyrosine recombinase [Deferribacter desulfuricans SSM1] gi|290754879|dbj|BAI81256.1| tyrosine recombinase [Deferribacter desulfuricans SSM1] Length = 302 Score = 153 bits (387), Expect = 3e-35, Method: Composition-based stats. Identities = 44/275 (16%), Positives = 92/275 (33%), Gaps = 25/275 (9%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKHTP 130 Y S ++ N+ S+ + + ++ D ++I +R V Sbjct: 8 DYFENYLISE--RQVSSNTVKSYLNDLNDLVSFIKDEDKSLKEIDYFALRMFVAYLYDKG 65 Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 SS + + ++R FK+ +++ + NP ++ PK+ + + + + Sbjct: 66 FSKSSIERKIATLRSFFKFLIKRGLIEDNPARMIKFPKKDKKLFTVFDIDTIFSLLELPD 125 Query: 188 E----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 + G + L EFL +G+R S+ + + ++ G + V ++ Sbjct: 126 KETPSGIRDALILEFLYGTGVRVSELVNIKLDDIDFGGMRVRIFGKGKKMRVIPLSDYIM 185 Query: 244 LLAMTP------------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGV 289 L + + FIN + KAG+ S H Sbjct: 186 DLIKKYLSVRENIVQKGIVNTDHLFINKFGTALTDRSVRRIVDKYLKKAGLPLNYSPHSF 245 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT + GA + G ++ + YT Sbjct: 246 RHTFATHLLENGADLRTIQKLLGHSSLATTQKYTH 280 >gi|159042951|ref|YP_001531745.1| phage integrase family protein [Dinoroseobacter shibae DFL 12] gi|157910711|gb|ABV92144.1| phage integrase family protein [Dinoroseobacter shibae DFL 12] Length = 397 Score = 153 bits (387), Expect = 3e-35, Method: Composition-based stats. Identities = 52/351 (14%), Positives = 100/351 (28%), Gaps = 20/351 (5%) Query: 14 ERTRHGKIIYYFRKGHGRRIR---LPYPHESTFIPAYMSALTGSTPKREYINSPR----- 65 R G Y + G R R + T A A N Sbjct: 32 RVMRSGTRTYQVQYRKGGRTRRASIGRHGTVTVQQARQRAKELLGDVASGGNPVEEISQH 91 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSGVE 124 ++ +T+ L + ++ +++ + D I G F + + I Sbjct: 92 RRASTVAALCERFFEAHVMERCKPSTQREYRRSIDFFINPAIGTFKVVDVERRDIAELHH 151 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----- 179 + P A + L + +F A PK + + + Sbjct: 152 KLRDKPYQANRTLGVLSKMFNLAEVWGLRPDGSNPCRHVPKYRERKRERYLSQAELRRLG 211 Query: 180 ---QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 + SE AF+ L+ +G R + +L N + KTG Sbjct: 212 EVLADCERSGSESPYVVAAFKLLILTGCRLGEIQTLRWDYLTPNGMELPDSKTGARRIPL 271 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSAT 295 L A+ + I + + T ++ AG+ + H +R A+ Sbjct: 272 PSAARAVLDALPHDPGNPYVIAGRIEGQHITDLQHPWRRIRDLAGLNDVRIHDLRHTYAS 331 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADR--IRLGIKNSRRISSVVD 344 + +G + G + Y AD + +N+ +S + Sbjct: 332 NAVSSGMPIQMVGRLLGHTQLQTTMRYAHLADDPVRKAAEENAAALSEGLG 382 >gi|227889862|ref|ZP_04007667.1| integrase-recombinase [Lactobacillus johnsonii ATCC 33200] gi|227849726|gb|EEJ59812.1| integrase-recombinase [Lactobacillus johnsonii ATCC 33200] Length = 296 Score = 153 bits (387), Expect = 3e-35, Method: Composition-based stats. Identities = 41/274 (14%), Positives = 100/274 (36%), Gaps = 25/274 (9%) Query: 75 ISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVESRKH 128 + +Y + S L+ N+ +S+ + ++ + D + + + + + Sbjct: 5 LEDYLRFSQVERGLSPNTIVSYRTDLEEYLSYLEDQNETSWEVDYLVVDSFLATQKDKGK 64 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +S + ++S+R ++W +RQ+ + +P + ++ PK + ++E++ + Sbjct: 65 ATTSISRMISSLRKFYQWLLRQDIIERDPLVKIDSPKSERRLPTALSEEEVTKLLDAPDT 124 Query: 189 GS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMK 243 + + R E L +G+R S+ + + + I+ K V + + + Sbjct: 125 NTSLGIRDRAMLEVLYATGMRVSELINLRTGDIHSELKIIRVLGKGSKERLVPITEVALS 184 Query: 244 LLAMTP------------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 L + F+NN ++ K G+ K + H + Sbjct: 185 WLEKYQKDVRENQVLKSGQFTDVIFLNNHGHQLTRQAVWQKIKKYCQLIGITKNVTPHTL 244 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323 R AT + GA + G + + YT Sbjct: 245 RHTFATHLLENGADLRVVQEILGHSDITTTQIYT 278 >gi|223043159|ref|ZP_03613206.1| tyrosine recombinase XerD [Staphylococcus capitis SK14] gi|314933674|ref|ZP_07841039.1| tyrosine recombinase XerD [Staphylococcus caprae C87] gi|222443370|gb|EEE49468.1| tyrosine recombinase XerD [Staphylococcus capitis SK14] gi|313653824|gb|EFS17581.1| tyrosine recombinase XerD [Staphylococcus caprae C87] Length = 295 Score = 153 bits (387), Expect = 3e-35, Method: Composition-based stats. Identities = 48/287 (16%), Positives = 101/287 (35%), Gaps = 25/287 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESR--- 126 +I EY L+ N+ ++ + + I + I+ + Sbjct: 4 IIEEYLNFIQIEKGLSSNTIGAYRRDLKKYEEYLEERKISHIDFVDRQVIQECLGHLIDL 63 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + S +F++++R ++A+R+ Y A +P + +E PK + + +++ Sbjct: 64 GQSSKSLARFISTIRSFHQFALRERYAAKDPTVLIETPKYEKKLPDVLEVQEVLDLLETP 123 Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 G + R E L +G+R S+ + V+ + + ++ V L D Sbjct: 124 DLSKNNGYRDRTMLELLYATGMRVSEIIQLEVEDVNLMMGFVRVFGKGNKERIVPLGDAV 183 Query: 242 MKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289 ++ L F+N + ++ K KA +NK+ H + Sbjct: 184 IEYLTTYIETVRPQLLKQTVTHVLFLNMHGKPLSRQGIWKMIKQNGIKANINKTLTPHTL 243 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKN 335 R AT + GA + G + + YT + +IR Sbjct: 244 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQ 290 >gi|46908189|ref|YP_014578.1| integrase/recombinase XerD [Listeria monocytogenes str. 4b F2365] gi|47093384|ref|ZP_00231151.1| integrase/recombinase XerD [Listeria monocytogenes str. 4b H7858] gi|226224560|ref|YP_002758667.1| integrase/recombinase [Listeria monocytogenes Clip81459] gi|254825549|ref|ZP_05230550.1| integrase/recombinase XerD [Listeria monocytogenes FSL J1-194] gi|254852857|ref|ZP_05242205.1| integrase/recombinase XerD [Listeria monocytogenes FSL R2-503] gi|254931873|ref|ZP_05265232.1| integrase/recombinase XerD [Listeria monocytogenes HPB2262] gi|254992940|ref|ZP_05275130.1| integrase/recombinase [Listeria monocytogenes FSL J2-064] gi|255520096|ref|ZP_05387333.1| integrase/recombinase [Listeria monocytogenes FSL J1-175] gi|300763733|ref|ZP_07073730.1| tyrosine recombinase XerD [Listeria monocytogenes FSL N1-017] gi|71153414|sp|Q71Y59|XERD_LISMF RecName: Full=Tyrosine recombinase xerD gi|46881459|gb|AAT04755.1| integrase/recombinase XerD [Listeria monocytogenes serotype 4b str. F2365] gi|47018255|gb|EAL09021.1| integrase/recombinase XerD [Listeria monocytogenes str. 4b H7858] gi|225877022|emb|CAS05731.1| Putative integrase/recombinase [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258606190|gb|EEW18798.1| integrase/recombinase XerD [Listeria monocytogenes FSL R2-503] gi|293583424|gb|EFF95456.1| integrase/recombinase XerD [Listeria monocytogenes HPB2262] gi|293594790|gb|EFG02551.1| integrase/recombinase XerD [Listeria monocytogenes FSL J1-194] gi|300515469|gb|EFK42519.1| tyrosine recombinase XerD [Listeria monocytogenes FSL N1-017] gi|328466303|gb|EGF37460.1| tyrosine recombinase xerD [Listeria monocytogenes 1816] gi|328472797|gb|EGF43646.1| tyrosine recombinase xerD [Listeria monocytogenes 220] Length = 297 Score = 153 bits (386), Expect = 4e-35, Method: Composition-based stats. Identities = 44/279 (15%), Positives = 94/279 (33%), Gaps = 26/279 (9%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHI---RSGVE 124 LI ++ L+ N+ ++E + G D + I + Sbjct: 3 DLIEDFLHFLIVERGLSANTIKAYERDLRYFVSYMDVAKGLTDPNTLERSDIVGFMAFAR 62 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK- 183 + S +++ S+R F + + ++ +P + +E PK+ + +D+++ Sbjct: 63 QEGKSARSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQGLPKVLNLDDVEKLLS 122 Query: 184 ---SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVE--- 236 + G + + E L +GLR ++ + L + F K + Sbjct: 123 SSDTSTPLGLRDQAMMEILYATGLRVTELVSLKMDDLHLHMGFIQTIGKGDKERIIPLGK 182 Query: 237 --------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286 + L + F+N+ Q + F K A ++G+ K + Sbjct: 183 TATTVLEKYLEEARPKLRRPKYRNDFVFLNHHGQGLTRQGFWKILKGIAKESGIEKPITP 242 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 H +R AT + GA + G + + YT Sbjct: 243 HTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHV 281 >gi|255262833|ref|ZP_05342175.1| phage integrase family protein [Thalassiobium sp. R2A62] gi|255105168|gb|EET47842.1| phage integrase family protein [Thalassiobium sp. R2A62] Length = 336 Score = 153 bits (386), Expect = 4e-35, Method: Composition-based stats. Identities = 69/337 (20%), Positives = 124/337 (36%), Gaps = 14/337 (4%) Query: 1 MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60 MT LP V + R+G +Y+ R+G + L F Y S L+G P Sbjct: 1 MT-KRELPKHVYR--QRNG--LYFQRRGWKSQKFLAEFGTPEFWTEYASILSGERPV--- 52 Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 + + K LI Y +S+ + L + + ++ Y GD + + K + Sbjct: 53 ---SKITARSFKALIKSYHRSSRYTQLKPRTALDYDKYLRFFEDVMGDANPVNMKRKDVI 109 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 +S P A L +RVL + V + +NP V K + PW +E + Sbjct: 110 RLRDSNADKPYFANYSLRVLRVLLEHCVDLGWREMNPARGVSEIKTVKKARSPWPQELLD 169 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 Q++ G++ RLA E + +G R D +Q+ F+++ KTG + + + Sbjct: 170 QYRIACPLGTRERLAMELCVGTGQRIGDVIEMRWSDIQDGGFAVRQNKTGKQLWIPILPE 229 Query: 241 FMKLLAMTPIGKETF-FINNDKQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSATISA 298 L + + + K + ++ H R +A Sbjct: 230 LQAALDAASRHSVFILTNERGTNRWSYRGVAQAVKKVRDQINALDFDIHSWRYNAACELV 289 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 +AG + A G ++ + YTK + I+ Sbjct: 290 EAGCGDDLVAAVTG-QSAAMVQHYTKQVRQRVRAIQA 325 >gi|169350488|ref|ZP_02867426.1| hypothetical protein CLOSPI_01256 [Clostridium spiroforme DSM 1552] gi|169292808|gb|EDS74941.1| hypothetical protein CLOSPI_01256 [Clostridium spiroforme DSM 1552] Length = 302 Score = 153 bits (386), Expect = 4e-35, Method: Composition-based stats. Identities = 57/282 (20%), Positives = 104/282 (36%), Gaps = 23/282 (8%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVES 125 LK I EY++ L+ N+ ++ +Q I +H+R ++ Sbjct: 3 LKDEIEEYKQYLIVEKGLSKNTINAYIKDLNQFESYLDHNFQITKINDIAKEHVRLYIKE 62 Query: 126 R--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-- 181 K + +S + L S+R+ F +A ++ + N + PK + +KE+MQ+ Sbjct: 63 LSKKISATSINRKLVSLRMFFTFATKETVIDTNIMSDFDLPKIDKKLPIVLSKEEMQELL 122 Query: 182 --FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELP 238 + S+ R FE + +GLR S+ + L N+ +K V L Sbjct: 123 DSIEINDHISSRNRCMFELMYATGLRVSELTNLTISSLNINMGYLKIIGKGDKERIVPLS 182 Query: 239 DGFMKLLAMTPIGKETFF---------INNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287 + +L F NN K++ + I K + +NK S H Sbjct: 183 NMARNILNDYLKHYRNEFIKKDSPLLFFNNHGNKLSREECYIILKQIIERTTINKKISPH 242 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R AT + GA + G + YT +++ Sbjct: 243 TIRHSFATHLLENGADLRSIQELLGHSNISTTTIYTHISNQK 284 >gi|227431702|ref|ZP_03913732.1| site-specific recombinase XerD [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352526|gb|EEJ42722.1| site-specific recombinase XerD [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 298 Score = 153 bits (386), Expect = 4e-35, Method: Composition-based stats. Identities = 54/301 (17%), Positives = 102/301 (33%), Gaps = 32/301 (10%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-GDFD-YRKITTKHIRSGVESRK 127 + I +Y L+ N+ S+ Q G+ ++ I S + + Sbjct: 5 IDNAIVDYLHYIRIERGLSENTIKSYHQDLVQFGEYLNGEKLVLDQVDHIVILSWLNQLR 64 Query: 128 H---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + SS I+ +T++R F + VR++ VA NP V PK+ + E++ + Sbjct: 65 DLGKSNSSVIRMVTTLRNFFGYLVREKVVAHNPMNDVRPPKKAEHLPAVLSIEEIDRLLQ 124 Query: 185 FWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPD 239 E + + R E + +GLR S+ + L + K + + + Sbjct: 125 APIEDTPLGLRNRTLIEVMYATGLRVSELVNLKMSDLHLQLGLIQTLGKGDKERIIPIGE 184 Query: 240 GFMKLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAGV--NKSAH 287 + L + + + + K T AG+ + S H Sbjct: 185 IAIDWLTRYFNESRIVLLKDKESPYVFLNDRGNQISRQGIWKIIKKLVTTAGITKDVSPH 244 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347 +R AT + GA + G + + YT + +R+S V D Sbjct: 245 TLRHSFATHILENGADLRIVQELLGHADISTTQIYTHISK---------KRLSEVYDEYH 295 Query: 348 P 348 P Sbjct: 296 P 296 >gi|300173433|ref|YP_003772599.1| tyrosine recombinase XerD [Leuconostoc gasicomitatum LMG 18811] gi|299887812|emb|CBL91780.1| tyrosine recombinase XerD [Leuconostoc gasicomitatum LMG 18811] Length = 298 Score = 153 bits (386), Expect = 4e-35, Method: Composition-based stats. Identities = 49/301 (16%), Positives = 95/301 (31%), Gaps = 32/301 (10%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRK 127 + I++Y L+ N+ S+ Q I I + + + + Sbjct: 5 IDSAIADYLHYIRIERGLSDNTIKSYHQDLQQFALYVTTEKLQLNDIDHIAILTWLNNLR 64 Query: 128 HTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 S + +TS+R F + +++ + NP V PK+ T ++ + Sbjct: 65 EQGKSNNSVIRMVTSLRKFFGYLLQEGLILHNPMTDVRPPKKAEHLPSVLTVAEIDALLA 124 Query: 185 FWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPD 239 +E G + R E L +GLR S+ + L + K + + + Sbjct: 125 VPTETTPLGVRNRTLIEVLYATGLRVSELVNLKMSDLHLQLGLIQTIGKGDKERIIPIGE 184 Query: 240 GFMKLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAGV--NKSAH 287 L + ++ + K AG+ + S H Sbjct: 185 VAADWLEKYFSNSRLLLLKGNESPFVFLNDRGNQLSRQGVWKIIKKLVLLAGITKDVSPH 244 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347 +R AT + GA + G + + YT + +R+S V D+ Sbjct: 245 TLRHSFATHILENGADLRIVQELLGHADISTTQIYTHISK---------KRLSEVYDNFH 295 Query: 348 P 348 P Sbjct: 296 P 296 >gi|116618399|ref|YP_818770.1| tyrosine recombinase XerD subunit [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097246|gb|ABJ62397.1| tyrosine recombinase XerD subunit [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 297 Score = 153 bits (386), Expect = 4e-35, Method: Composition-based stats. Identities = 54/301 (17%), Positives = 102/301 (33%), Gaps = 32/301 (10%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-GDFD-YRKITTKHIRSGVESRK 127 + I +Y L+ N+ S+ Q G+ ++ I S + + Sbjct: 4 IDNAIVDYLHYIRIERGLSENTIKSYHQDLVQFGEYLNGEKLVLDQVDHIVILSWLNKLR 63 Query: 128 H---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + SS I+ +T++R F + VR++ VA NP V PK+ + E++ + Sbjct: 64 DLGKSNSSVIRMVTTLRNFFGYLVREKVVAHNPMNDVRPPKKAEHLPAVLSIEEIDRLLQ 123 Query: 185 FWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPD 239 E + + R E + +GLR S+ + L + K + + + Sbjct: 124 APIEDTPLGLRNRTLLEVMYATGLRVSELVNLKMSDLHLQLGLIQTLGKGDKERIIPIGE 183 Query: 240 GFMKLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAGV--NKSAH 287 + L + + + + K T AG+ + S H Sbjct: 184 IAIDWLTRYFNESRIVLLKDKESPYVFLNDRGNQISRQGIWKIIKKLVTTAGITKDVSPH 243 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347 +R AT + GA + G + + YT + +R+S V D Sbjct: 244 TLRHSFATHILENGADLRIVQELLGHADISTTQIYTHISK---------KRLSEVYDEYH 294 Query: 348 P 348 P Sbjct: 295 P 295 >gi|255026410|ref|ZP_05298396.1| hypothetical protein LmonocytFSL_08880 [Listeria monocytogenes FSL J2-003] Length = 290 Score = 153 bits (386), Expect = 4e-35, Method: Composition-based stats. Identities = 44/279 (15%), Positives = 94/279 (33%), Gaps = 26/279 (9%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHI---RSGVE 124 LI ++ L+ N+ ++E + D + I + Sbjct: 3 DLIEDFLHFLIVERGLSANTIKAYERDLHYFVSYMDVTKELTDPNTLERSDIVGFMAFAR 62 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK- 183 +P S +++ S+R F + + ++ +P + +E PK+ + +D+++ Sbjct: 63 QEGKSPRSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAKGLPKVLNLDDVEKLLS 122 Query: 184 ---SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVE--- 236 + G + + E L +GLR ++ + L + F K + Sbjct: 123 SSDTSTPLGLRDQAMMEILYATGLRVTELVSLKMDDLHLHMGFIQTIGKGDKERIIPLGK 182 Query: 237 --------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286 + L + F+N+ Q + F K A ++G+ K + Sbjct: 183 TATTVLEKYLEEARPKLRRPKYRNDFVFLNHHGQGLTRQGFWKILKGIAKESGIEKPITP 242 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 H +R AT + GA + G + + YT Sbjct: 243 HTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHV 281 >gi|70726420|ref|YP_253334.1| site-specific recombinase [Staphylococcus haemolyticus JCSC1435] gi|82582338|sp|Q4L6J7|XERD_STAHJ RecName: Full=Tyrosine recombinase xerD gi|68447144|dbj|BAE04728.1| site-specific recombinase [Staphylococcus haemolyticus JCSC1435] Length = 295 Score = 152 bits (385), Expect = 5e-35, Method: Composition-based stats. Identities = 51/287 (17%), Positives = 104/287 (36%), Gaps = 25/287 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHT 129 +I EY K L+ N+ ++ + + I + I+ + S Sbjct: 4 IIEEYLKFIQIEKGLSENTIGAYRRDLKKYQLYMQEQKIAHIDFIDRQTIQECLGSLIDQ 63 Query: 130 PSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 +SA +F++++R ++A+R++Y A +P + +E PK + + E++ Q Sbjct: 64 GASAKSIARFISTIRSFHQFALREKYAAKDPTVLIETPKYEKKLPDVLDVEEVIQLLETP 123 Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGF 241 G + R E L +G+R ++ + + + F K + L D Sbjct: 124 DLTKNNGYRDRTILELLYATGMRVTELIQIEIDDVNLIMGFVKVFGKGNKERIIPLGDTV 183 Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289 ++ L + F+N + + K +A +NK+ H + Sbjct: 184 IEYLDTYINNVRSQLLKKTVTNVLFLNLHGRPLTRQGIWKLIKQYGLRANINKTLTPHTL 243 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKN 335 R AT + GA + G + + YT + +IR Sbjct: 244 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKTQIRQMYNQ 290 >gi|330997435|ref|ZP_08321286.1| tyrosine recombinase XerD [Paraprevotella xylaniphila YIT 11841] gi|329570809|gb|EGG52525.1| tyrosine recombinase XerD [Paraprevotella xylaniphila YIT 11841] Length = 317 Score = 152 bits (385), Expect = 5e-35, Method: Composition-based stats. Identities = 53/297 (17%), Positives = 101/297 (34%), Gaps = 25/297 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR---K 127 L+ Y + L+ N+ ++ +++ D D+R ++ + + Sbjct: 19 LLRRYYQYLKLERGLSENTLDAYTEDLRKLLDFFSDEELDFRAVSLDDLHQFMAELADVG 78 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS--- 184 +P S + L+ +R +++ ++ + +P +E PK T ++ Sbjct: 79 ISPRSMARILSGIRSFYRFLYVEKEIEQDPTELLESPKIGRRLPEVLTVAEIDAMIEGID 138 Query: 185 -FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 EG + R E L GLR S+ C + L I+ + V + + Sbjct: 139 LSQPEGQRNRAILEMLYSCGLRVSELCGLRISDLFLEEGFIRVKGKGEKERLVPISGRAV 198 Query: 243 KLLAMTPIGKETFFINNDKQKM-----------NATQFSIWFKAKATKAGVNKS--AHGV 289 L + + I + + W K A AG+ K+ H Sbjct: 199 HELENWFLCRNLIRIKPGHEDFVFLSLRRGTALSRITIFYWVKELAVAAGIQKTISPHTF 258 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346 R AT + GA + A G +++ E YT DR RL + + D Sbjct: 259 RHSFATHLLEGGANLRVIQAMLGHESISTTEIYTH-IDRSRLRREIMEHHPRNIRDD 314 >gi|163738156|ref|ZP_02145572.1| phage integrase [Phaeobacter gallaeciensis BS107] gi|161388772|gb|EDQ13125.1| phage integrase [Phaeobacter gallaeciensis BS107] Length = 392 Score = 152 bits (385), Expect = 5e-35, Method: Composition-based stats. Identities = 54/356 (15%), Positives = 102/356 (28%), Gaps = 21/356 (5%) Query: 14 ERTRHGKIIYYFRKGHG---RRIRLPYPHESTFIPAYMSALT-----GSTPKREYINSPR 65 G Y + G RR+ + + T A A S Sbjct: 32 RVMPSGAKTYQAQYRKGGRTRRVSVGRHGKITVEEARKLAKEIMGQVAKGENPAEELSQH 91 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSGVE 124 +K T+ L + ++ +++ + D I G F + + I Sbjct: 92 RKTPTVAALCERFFEAHAKERCKPSTQKEYRRAIDLFIVPAIGSFKVVDVERRDIAELHH 151 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + P A + L + +F A PK + + ++ Q Sbjct: 152 RFRDKPYQANRTLGVLSKMFNLAEIWGLRPDGSNPCRHVPKYREIKRERYLNQNELQRLG 211 Query: 185 FW--------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 +E AF L+ +G R + ++ + + KTG Sbjct: 212 HVLSEVEREGTETPFVVAAFRLLILTGCRLGEIQTLKWDYITDTGMELPDTKTGARRIPL 271 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSAT 295 L + + I AT ++ +AG+ H +R A+ Sbjct: 272 PQPARDVLTHLPRTPGNPYVIEGKLAGQYATDLQHPWRRIRARAGLAGVRIHDLRHTYAS 331 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADR--IRLGIKNSRRISSVV-DSDDP 348 + +G + G + Y AD + +N+ R+ S+V D P Sbjct: 332 NAVSSGMPIQMVGRLLGHSQIQTTMRYAHLADDPVRQAAEENAARLGSIVGDLRRP 387 >gi|312114649|ref|YP_004012245.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100] gi|311219778|gb|ADP71146.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100] Length = 312 Score = 152 bits (385), Expect = 5e-35, Method: Composition-based stats. Identities = 83/304 (27%), Positives = 138/304 (45%), Gaps = 7/304 (2%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPYP-HESTFIPAYMSALTGSTPKREYINSPRKK 67 +V +++ R+GK Y+ + R+ L P F+ Y +A E PR Sbjct: 10 KYVRRKKGRNGKEHLYYEEPGKERVALRGPIGSPAFLADYNAATEAE----ELPKRPRAA 65 Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127 +L L++ Y+ S + +LA +++ ++ GD D R + I E Sbjct: 66 AYSLTALVAAYQGSQRFRALAPSTQAVRRRIMSRLAAVYGDGDIRSMKRGDIVRMTEKLA 125 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 P A L + L K A+ + NP + RP+ KT+G WT+ ++ ++ W Sbjct: 126 SGPEGARSLLKLTQQLVKLAIDLGWRDDNPVRDISRPRIKTDGRHCWTEAEIAAYRKRWD 185 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247 G++ RLA E LL +G R D R +H++ + +KT + + +K++A Sbjct: 186 VGTRQRLALELLLQTGQRKGDVVRLSREHVKGGRLKLTQEKTHVCVDAAIKPELLKIIAA 245 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAH 305 T G +T ++ F F+A +AG+ SAHG+RK A A+AGATAH Sbjct: 246 TVTGVQTLLVSTKGTPYGTKAFCGVFRAWCDEAGLPPECSAHGLRKAFARRMAEAGATAH 305 Query: 306 ELMA 309 E+MA Sbjct: 306 EIMA 309 >gi|254476808|ref|ZP_05090194.1| phage integrase [Ruegeria sp. R11] gi|214031051|gb|EEB71886.1| phage integrase [Ruegeria sp. R11] Length = 333 Score = 152 bits (385), Expect = 5e-35, Method: Composition-based stats. Identities = 71/339 (20%), Positives = 127/339 (37%), Gaps = 11/339 (3%) Query: 1 MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60 M L +VT + + G++ YYFR+G + P F AY + +G Sbjct: 1 MVKKLER-KYVTTKTVK-GRVYYYFRRGETYQRLPNDPDSQEFDDAYWAIRSG------- 51 Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 + +K TT + LI Y ++ + R + + I K+G D+ K+ + + Sbjct: 52 -RAKKKTKTTFEALIVSYYQTPEFKDRKPRVRQEYRRTLELIREKNGPKDFTKLRRRDVI 110 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + ++ T A + + +L + A+ E++ NP V++ K P K Sbjct: 111 AARDAYSDTWRKANAMVEMISILSRHAIDLEWITANPASGVKKLKGGEYQPWPAAKLRAF 170 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 + + A+ + +G R D H S+ +KT + V P+ Sbjct: 171 EAYCENNALEWELTAYMLGVGTGQRIGDVIGMEWAHYDGQFISVVQEKTAARLWVACPEF 230 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISAD 299 K L P + + + A + G HG R +A A+ Sbjct: 231 LRKYLDGLPRKGRFIIAQSLHKGVAKRTIQQRVMAVRKEIGAQAFVIHGWRYTAAVHLAE 290 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338 AGA+ E+ A G KT++ + Y A++ RL R Sbjct: 291 AGASDSEIQAVTGHKTLEMVKKYRSQANQKRLSQTAQAR 329 >gi|163814162|ref|ZP_02205554.1| hypothetical protein COPEUT_00316 [Coprococcus eutactus ATCC 27759] gi|158450611|gb|EDP27606.1| hypothetical protein COPEUT_00316 [Coprococcus eutactus ATCC 27759] Length = 292 Score = 152 bits (385), Expect = 5e-35, Method: Composition-based stats. Identities = 42/272 (15%), Positives = 97/272 (35%), Gaps = 21/272 (7%) Query: 72 KWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYR---KITTKHIRSG---VE 124 + I Y + + N+ S+ + + D IT +I S +E Sbjct: 2 EQYIDRYVEYLRNVKKSSENTIASYRRDLMKFVAYFCDKHLDRLEDITETYITSYVLDME 61 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + ++ + + S++ + + +R+ V +P +++ PK + T ++ + S Sbjct: 62 KNGMSMATVSRNIASIKSFYAFLLRERIVDDDPAENIKPPKIVKKVPEILTISEVNKLLS 121 Query: 185 FWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 + + + + E L +G+R ++ + + + I+ + TV + + Sbjct: 122 QPTNKTPKEIRDKAMLELLYATGIRVTELVTLKLTDVNMKLGFIECHDGDRVRTVPVAEV 181 Query: 241 FMKLLAMTPIGKETFF--------INNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 + L+ N M+ F K A KAG++K + H +R Sbjct: 182 AQRALSRYITEVRDDMSGGSDYLFFNCKGAPMSRQGFWKIIKYYAAKAGIDKDITPHMIR 241 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETY 322 A+ + GA + G + + Y Sbjct: 242 HSFASHMLNNGADIKSVQEMLGHVDIATTQIY 273 >gi|121535764|ref|ZP_01667566.1| tyrosine recombinase XerD [Thermosinus carboxydivorans Nor1] gi|121305663|gb|EAX46603.1| tyrosine recombinase XerD [Thermosinus carboxydivorans Nor1] Length = 295 Score = 152 bits (384), Expect = 7e-35, Method: Composition-based stats. Identities = 48/301 (15%), Positives = 103/301 (34%), Gaps = 33/301 (10%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRK 127 + E+ LA N+ S+ Q + I I + + + + Sbjct: 2 DSYVDEFINYLAVERGLAQNTLESYGRDLRQFQLFLQNDKLDIIKDSNRNTILNYLNNLQ 61 Query: 128 HTPS---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + + L +++ +++ VR+ Y+ +P ++E PK + + + + ++++ Sbjct: 62 SKGRAVSTISRNLAAIKSFYQYLVRERYIDKDPAANLESPKLEKKLPKILSIAEVEELLK 121 Query: 185 FWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPD 239 + G + + E L +G+R S+ + + ++ IK G V L Sbjct: 122 QPNSLLPTGLRDKAMLELLYATGIRVSELISLNITDVNLDMGYIKCYGKGAKERIVPLGS 181 Query: 240 GFMKLLAMTP----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287 K + + F+N+ ++ F K A +A + K + H Sbjct: 182 IAAKCVQEYIAKGRPKLVRTYDEPALFVNHHGNRLTRQGFWKIIKKYAQEANITKEITPH 241 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347 +R AT + GA + G + + YT R+ V D Sbjct: 242 TLRHSFATHLLENGADLRSVQEMLGHADISTTQIYTHVTK---------NRLKEVYDKAH 292 Query: 348 P 348 P Sbjct: 293 P 293 >gi|282852078|ref|ZP_06261436.1| tyrosine recombinase XerD [Lactobacillus gasseri 224-1] gi|282556838|gb|EFB62442.1| tyrosine recombinase XerD [Lactobacillus gasseri 224-1] Length = 296 Score = 152 bits (384), Expect = 7e-35, Method: Composition-based stats. Identities = 42/274 (15%), Positives = 101/274 (36%), Gaps = 25/274 (9%) Query: 75 ISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVESRKH 128 + +Y + S L+ N+ IS+ + ++ + D + + + + + Sbjct: 5 LEDYLRFSQVERGLSPNTIISYRTDLEEYLDYLQDQNETSWEVDYLVVDAFLATQKDKGK 64 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +S + ++S+R ++W +RQ+ + +P + ++ PK + ++E++ + + Sbjct: 65 ATTSISRMISSLRKFYQWLLRQDIIERDPLVKIDSPKSERRLPTALSEEEVDKLLAAPDT 124 Query: 189 GS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMK 243 + + R E L +G+R S+ + ++ I+ K V + + + Sbjct: 125 NTPLGIRDRAMLEVLYATGMRVSELINLRTGDIHADLKIIRVLGKGSKERLVPITEVALS 184 Query: 244 LLAMTP------------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 L + F+NN ++ K G+ K + H + Sbjct: 185 WLEKYQTDVRDAQVLKSGQFTDVIFLNNHGHQLTRQAVWQKIKKYCQLIGITKNVTPHTL 244 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323 R AT + GA + G + + YT Sbjct: 245 RHTFATHLLENGADLRVVQEILGHSDITTTQIYT 278 >gi|289550729|ref|YP_003471633.1| Site-specific recombinase XerD [Staphylococcus lugdunensis HKU09-01] gi|289180261|gb|ADC87506.1| Site-specific recombinase XerD [Staphylococcus lugdunensis HKU09-01] Length = 295 Score = 152 bits (384), Expect = 7e-35, Method: Composition-based stats. Identities = 45/277 (16%), Positives = 100/277 (36%), Gaps = 24/277 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHT 129 +I EY K L+ N+ ++ D+ I + I+ + Sbjct: 4 IIEEYLKFIQIEKGLSPNTIGAYRRDLDKYKLYLETRHIEHIDFIDRQTIQECLGYLIDQ 63 Query: 130 PSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 SSA +F++++R ++A+R++Y A +P + +E PK + + +++ + Sbjct: 64 GSSAKSLARFISTIRSFHQFALREKYAAKDPTVLLETPKYEKKLPDVLEIDEVVRLLEAP 123 Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 G + R E + +G+R S+ ++++ + ++ + L D Sbjct: 124 DLSKKNGYRDRTILELMYATGMRVSELVHIEIENINVIMGFVRVFGKGDKERIIPLGDTV 183 Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289 + L F+N + ++ K K+ + K+ H + Sbjct: 184 IDYLKTYMKEIRPQLLKSTVTNVLFLNMHGKPLSRQGIWKMIKQYGIKSNITKTLTPHTL 243 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 R AT + GA + G + + YT + Sbjct: 244 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVS 280 >gi|99078558|ref|YP_611816.1| phage integrase [Ruegeria sp. TM1040] gi|99035696|gb|ABF62554.1| phage integrase [Ruegeria sp. TM1040] Length = 411 Score = 152 bits (383), Expect = 8e-35, Method: Composition-based stats. Identities = 55/351 (15%), Positives = 99/351 (28%), Gaps = 20/351 (5%) Query: 14 ERTRHGKIIYYFRKGHG---RRIRLPYPHESTFIPAYMSALT-----GSTPKREYINSPR 65 G Y + G RR+ + + T A A S Sbjct: 51 RVMPSGAKTYQAQYRKGGRTRRVSVGRHGKITVDEARKLAKEIMGQVAKGENPAEEISQH 110 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSGVE 124 +K T+ L + ++ +++ + D I G F + + I Sbjct: 111 RKAPTVAALCERFFEAHAKERCKPSTQKEYRRAIDLFIVPALGSFKVVDVERRDIAELHH 170 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK- 183 + P A + L + +F A PK + + + Q Sbjct: 171 KFRDKPHQANRTLGVLSKMFNLAEIWGLRPDGSNPCRHVPKYREVKRERFLSQSELQRLG 230 Query: 184 -------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 SE AF L+ +G R + ++ N + KTG Sbjct: 231 QVLTEVEREGSETPHMVAAFRLLILTGCRLGEIQTLKWGYITANGMELPDSKTGARRIPL 290 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSAT 295 L + + I AT ++ +AG+ H +R A+ Sbjct: 291 PQPARDVLARLPRTPGHPYVIEGKLPGQYATDLQHPWRRIRDRAGLCGVRIHDLRHTYAS 350 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADR--IRLGIKNSRRISSVVD 344 + AG + G + Y AD + +N+ R+ S+V Sbjct: 351 NAVSAGMPIQMVGRLLGHTQIQTTMRYAHLADDPVRQAAEENAARLGSMVG 401 >gi|332035836|gb|EGI72320.1| site-specific recombinase XerD [Pseudoalteromonas haloplanktis ANT/505] Length = 308 Score = 152 bits (383), Expect = 1e-34, Method: Composition-based stats. Identities = 45/283 (15%), Positives = 99/283 (34%), Gaps = 20/283 (7%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKH 128 + + S + ++ N+ ++ S D+ + +T I + Sbjct: 20 DYLETFLDSLYLEQGVSENTLSAYRSDLDKFCLFLKGENLMTVTGLDIESYLAHRVDLGL 79 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187 P S + +++++ +++ VR++ ++ +P L++ +PK + ++ +++ + + Sbjct: 80 KPRSTARSISALKRFYQYFVREKIISDSPMLNIAQPKAGQSLPKTLSEAEVEALLNAPNT 139 Query: 188 ---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243 G + + E L +GLR S+ ++ + K V L + M Sbjct: 140 EEAMGLRDKAMLELLYATGLRVSELVGLRMEQINLRQAVVFVKGKGNKERLVPLGEEAMY 199 Query: 244 LL---------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKF 292 L M + F + M F K A A V S H +R Sbjct: 200 WLEQFLKGGRAQMIKHATDFVFPSKRGVGMTRQTFWHRIKHYAILASVESPLSPHTMRHA 259 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 AT + GA + G + + YT A+ + Sbjct: 260 FATHLLNHGADLRVVQMMLGHSDLSTTQIYTHVANERLKSVHA 302 >gi|329667457|gb|AEB93405.1| integrase/recombinase XerD [Lactobacillus johnsonii DPC 6026] Length = 296 Score = 152 bits (383), Expect = 1e-34, Method: Composition-based stats. Identities = 41/274 (14%), Positives = 100/274 (36%), Gaps = 25/274 (9%) Query: 75 ISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVESRKH 128 + +Y + S L+ N+ +S+ + ++ + D + + + + + Sbjct: 5 LEDYLRFSQVERGLSPNTIVSYRTDLEEYLSYLEDQNETSWEVDYLVVDAFLATQKDKGK 64 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +S + ++S+R ++W +RQ+ + +P + ++ PK + ++E++ + Sbjct: 65 ATTSISRMISSLRKFYQWLLRQDIIERDPLVKIDSPKSERRLPTALSEEEVTKLLDAPDT 124 Query: 189 GSQ----PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMK 243 ++ R E L +G+R S+ + + + I+ K V + + + Sbjct: 125 NTRLGIRDRAMLEVLYATGMRVSELINLRTGDIHSELKIIRVLGKGSKERLVPVTEVALS 184 Query: 244 LLAMTP------------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 L + F+NN ++ K G+ K + H + Sbjct: 185 WLEKYQKDVRENQVLKSGQFTDVIFLNNHGHQLTRQAVWQKIKKYCQLIGITKNVTPHTL 244 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323 R AT + GA + G + + YT Sbjct: 245 RHTFATHLLENGADLRVVQEILGHSDITTTQIYT 278 >gi|42519008|ref|NP_964938.1| integrase/recombinase XerD [Lactobacillus johnsonii NCC 533] gi|41583295|gb|AAS08904.1| integrase/recombinase XerD [Lactobacillus johnsonii NCC 533] Length = 296 Score = 152 bits (383), Expect = 1e-34, Method: Composition-based stats. Identities = 41/274 (14%), Positives = 100/274 (36%), Gaps = 25/274 (9%) Query: 75 ISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVESRKH 128 + +Y + S L+ N+ +S+ + ++ + D + + + + + Sbjct: 5 LEDYLRFSQVERGLSPNTIVSYRTDLEEYLSYLEDQNETSWEVDYLVVDAFLATQKDKGK 64 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +S + ++S+R ++W +RQ+ + +P + ++ PK + ++E++ + Sbjct: 65 ATTSISRMISSLRKFYQWLLRQDIIERDPLVKIDSPKSERRLPTALSEEEVTKLLDAPDT 124 Query: 189 GSQ----PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMK 243 ++ R E L +G+R S+ + + + I+ K V + + + Sbjct: 125 NTRLGIRDRAMLEVLYATGMRVSELINLRTGDIHSELKIIRVLGKGSKERLVPITEVALS 184 Query: 244 LLAMTP------------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 L + F+NN ++ K G+ K + H + Sbjct: 185 WLEKYQKDVRENQVLKSGQFTDVIFLNNHGHQLTRQAVWQKIKKYCQLIGITKNVTPHTL 244 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323 R AT + GA + G + + YT Sbjct: 245 RHTFATHLLENGADLRVVQEILGHSDITTTQIYT 278 >gi|258515282|ref|YP_003191504.1| tyrosine recombinase XerD [Desulfotomaculum acetoxidans DSM 771] gi|257778987|gb|ACV62881.1| tyrosine recombinase XerD [Desulfotomaculum acetoxidans DSM 771] Length = 296 Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats. Identities = 41/271 (15%), Positives = 89/271 (32%), Gaps = 25/271 (9%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI------TTKHIRSGVESRKHTPS 131 Y + LA N+ ++ + D + T ++ + +P+ Sbjct: 10 YYLAVE-RGLAENTLSAYRMDLQNFLSFCQDKQIKSWSDAGKNTILMYMMFLKQQAMSPA 68 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWS 187 + + L +++ F++ ++ V +P S+E PK + + ++ Q K Sbjct: 69 TISRRLAALKSFFRFLTSEQVVEFSPTESMESPKLSQKLPNVLSTSEVELLLMQPKISQP 128 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE---------- 236 G + + E L +G+R S+ ++ + I+ V Sbjct: 129 AGIRDKAMLELLYATGIRVSELVDLNLEDVSIAEQFIRCYGKGSKERIVPLGSLSASFVE 188 Query: 237 -LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293 L F+N+ Q++ F K + ++K + H +R Sbjct: 189 EYLQKGRVKLIKKAQTTNALFLNHHGQRLTRQGFWKIIKKYGRQGKIDKPITPHTLRHSF 248 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324 AT + GA + G + + YT Sbjct: 249 ATHLLENGADLRSVQEMLGHADISTTQIYTH 279 >gi|315230922|ref|YP_004071358.1| phage integrase [Thermococcus barophilus MP] gi|315183950|gb|ADT84135.1| phage integrase [Thermococcus barophilus MP] Length = 276 Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats. Identities = 43/281 (15%), Positives = 98/281 (34%), Gaps = 18/281 (6%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134 I E+ + N+ + Y + + + D + + ++ ++ S Sbjct: 3 IEEFEMYLELEGKSQNTVRMYSYYVKKFLEE--GNDLNARSALRFLAVLKRSGYSNKSLN 60 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-GSQPR 193 + +++ F++ ++ PK + TKE++++ S + R Sbjct: 61 LVVQALKAYFRFEG-----LEEEAKKIKSPKVPRSLPKSLTKEEVKKLLSVIPPTRKRDR 115 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMTPIG 251 L L SGLR S+ C + + ++ K G V +P +K + Sbjct: 116 LIVLLLYGSGLRVSELCNLKINDVDFKRSLIIVRGGKGGKDRIVPVPGALLKEIEDYLKM 175 Query: 252 KETFFIN-------NDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATA 304 + + K +++ KAG+ + H +R AT + G Sbjct: 176 RNDDSEYLLVEERRSRKDRLSPKTVWYILNKYGKKAGIKVTPHMLRHSFATHMLENGIDI 235 Query: 305 HELMATYGWKTVDQAETYTKG-ADRIRLGIKNSRRISSVVD 344 + G + + YTK + +R + ++ I S+++ Sbjct: 236 RVIQEILGHSNLSTTQIYTKVTVEHLRRAQEKAKLIESLIE 276 >gi|268319602|ref|YP_003293258.1| tyrosine recombinase xerD [Lactobacillus johnsonii FI9785] gi|262397977|emb|CAX66991.1| tyrosine recombinase xerD [Lactobacillus johnsonii FI9785] Length = 302 Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats. Identities = 41/274 (14%), Positives = 100/274 (36%), Gaps = 25/274 (9%) Query: 75 ISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVESRKH 128 + +Y + S L+ N+ +S+ + ++ + D + + + + + Sbjct: 11 LEDYLRFSQVERGLSPNTIVSYRTDLEEYLSYLEDQNEKSWEVDYLVVDAFLATQKDKGK 70 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +S + ++S+R ++W +RQ+ + +P + ++ PK + ++E++ + Sbjct: 71 ATTSISRMISSLRKFYQWLLRQDIIERDPLVKIDSPKSERRLPTALSEEEVTKLLDAPDT 130 Query: 189 GSQ----PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMK 243 ++ R E L +G+R S+ + + + I+ K V + + + Sbjct: 131 NTRLGIRDRAMLEVLYATGMRVSELINLRTGDIHSELKIIRVLGKGSKERLVPITEVALS 190 Query: 244 LLAMTP------------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 L + F+NN ++ K G+ K + H + Sbjct: 191 WLEKYQKDVRENQVLKSGQFTDVIFLNNHGHQLTRQAVWQKIKKYCQLIGITKNVTPHTL 250 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323 R AT + GA + G + + YT Sbjct: 251 RHTFATHLLENGADLRVVQEILGHSDITTTQIYT 284 >gi|242373798|ref|ZP_04819372.1| tyrosine recombinase XerD [Staphylococcus epidermidis M23864:W1] gi|242348535|gb|EES40137.1| tyrosine recombinase XerD [Staphylococcus epidermidis M23864:W1] Length = 295 Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats. Identities = 48/287 (16%), Positives = 103/287 (35%), Gaps = 25/287 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESR--- 126 +I EY L+ N+ ++ ++ + I + I+ + Sbjct: 4 IIEEYLNFIQIEKGLSSNTIGAYRRDLNKYKTYLEERKITHIDFVDRQVIQECLGHLIDL 63 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + S +F++++R ++A+R++Y A +P + +E PK + + +++ Sbjct: 64 GQSSKSLARFISTIRSFHQFALREKYAAKDPTVLIETPKYEKKLPDVLEVQEVLDLLETP 123 Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 G + R E L +G+R S+ + V+ + + ++ V L D Sbjct: 124 DLTKNNGYRDRTMLELLYATGMRVSEIIQLEVEDVNLMMGFVRVFGKGNKERIVPLGDAV 183 Query: 242 MKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289 ++ L F+N + ++ K KA +NK+ H + Sbjct: 184 IEYLTTYIETVRPQLLKQTVTHVLFLNMHGKPLSRQGIWKMIKQNGIKANINKTLTPHTL 243 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKN 335 R AT + GA + G + + YT + +IR Sbjct: 244 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQ 290 >gi|326790923|ref|YP_004308744.1| integrase family protein [Clostridium lentocellum DSM 5427] gi|326541687|gb|ADZ83546.1| integrase family protein [Clostridium lentocellum DSM 5427] Length = 365 Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats. Identities = 45/364 (12%), Positives = 108/364 (29%), Gaps = 37/364 (10%) Query: 14 ERTRHGKIIY---YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 + G Y Y G+R A L ++ T Sbjct: 4 YIRKRGNRYYPMIYLGYIGGKRKYKSGGGFDKRSEAKEELLKMQNKIKKNSIMIEADDMT 63 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKH- 128 L ++ + +++ + +++ ++ ++ G+ + I HI+ + + KH Sbjct: 64 FGELAEQWYEMHAKPTISYRALENYKGILNKSLVPAFGNVKLKTIQPIHIQRYLMTLKHL 123 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +P++ ++ ++ + V + + I+P + P T+ W + +F + + Sbjct: 124 SPATIRKYFYVLKSIMDKGVEWKILEISPIKGITLPSLTTQEFTVWDNVQINKFLN-IVK 182 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------------- 232 ++ + F +G+R + C I ++ Sbjct: 183 DTKWYVPFLLAFTTGMRQGEICGLKWSDYNTITGDISVSRSMQRNFKLKDTKTKSSRRKI 242 Query: 233 -----------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 + LL I +N+ + +N FK + Sbjct: 243 VLLKKTKLALDYQKRCQEENENLLGKQYINSGFICTHNNGESINPENLGKTFKKLIKEYK 302 Query: 282 V-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRI 339 + H +R ATI G + G V Y+ L +++ Sbjct: 303 LEPIRFHDIRHSFATILLQNGTNPKIVSEILGHSDVQTTLNVYSHVLPD--LQKDTMQQL 360 Query: 340 SSVV 343 ++ Sbjct: 361 EGIL 364 >gi|119775871|ref|YP_928611.1| integrase/recombinase XerD [Shewanella amazonensis SB2B] gi|119768371|gb|ABM00942.1| integrase/recombinase XerD [Shewanella amazonensis SB2B] Length = 321 Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats. Identities = 56/313 (17%), Positives = 105/313 (33%), Gaps = 24/313 (7%) Query: 44 IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSA-HWGSLAVNSRISFESYFDQI 102 + A + + E +P K LI + L+ N+ ++ + Q Sbjct: 1 MSAKANTSRKGGKRPEKSGAPLKPSAAGMALIDAFLDELWSLQGLSDNTLSAYRTDLCQF 60 Query: 103 IRKS-----GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP 157 G +T + + + +S + L+S+R ++ + ++ +P Sbjct: 61 DAFLTAKGIGLLALDSLTLRDYLAYRFEQGMAKTSTARMLSSLRRFYRHQLVSGTLSEDP 120 Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAG 213 +E PK ++ ++Q + S + + E L +GLR S+ G Sbjct: 121 TALIESPKLPKSLPGSLSEAQVEQLLAEPSSDDPVECRDKAMLELLYATGLRVSELVGLG 180 Query: 214 VQHLQNNIFSIKTQKTG-TIITVELPDGFMKLLAMTPIGKETF----------FINNDKQ 262 + L ++ G V + + L G F +N Q Sbjct: 181 MSELGLRQGLVRIIGKGGKERLVPMGEVAQDALEQFLAGPRQMLLKQGATEVVFPSNRGQ 240 Query: 263 KMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320 +M F K A +AG+ S H +R AT + GA + G ++ + Sbjct: 241 QMTRQTFWHRIKLYALRAGISTELSPHTLRHAFATHLLNHGADLRVVQLLLGHSSLSTTQ 300 Query: 321 TYTKGADRIRLGI 333 YT A R RL Sbjct: 301 IYTHVA-RTRLAD 312 >gi|254831444|ref|ZP_05236099.1| hypothetical protein Lmon1_08823 [Listeria monocytogenes 10403S] gi|284802400|ref|YP_003414265.1| hypothetical protein LM5578_2156 [Listeria monocytogenes 08-5578] gi|284995542|ref|YP_003417310.1| hypothetical protein LM5923_2107 [Listeria monocytogenes 08-5923] gi|284057962|gb|ADB68903.1| hypothetical protein LM5578_2156 [Listeria monocytogenes 08-5578] gi|284061009|gb|ADB71948.1| hypothetical protein LM5923_2107 [Listeria monocytogenes 08-5923] Length = 297 Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 44/279 (15%), Positives = 94/279 (33%), Gaps = 26/279 (9%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHI---RSGVE 124 LI ++ L+ N+ ++E + D + I + Sbjct: 3 DLIEDFLHFLIVERGLSANTIKAYERDLHYFVSYMDVTKELTDPNTLERSDIVGFMAFAR 62 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK- 183 +P S +++ S+R F + + ++ +P + +E PK+ + +D+++ Sbjct: 63 QEGKSPRSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAKGLPKVLNLDDVEKLLS 122 Query: 184 ---SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVE--- 236 + G + + E L +GLR ++ + L + F K + Sbjct: 123 SSDTSTPLGLRDQAMMEILYATGLRVTELVSLKMDDLHLHMGFIQTIGKGDKERIIPLGK 182 Query: 237 --------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286 + L + F+N+ Q + F K A ++G+ K + Sbjct: 183 TATTVLEKYLEEARPKLRRPKYRNDFVFLNHHGQGLTRQGFWKILKGIAKESGIEKPITP 242 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 H +R AT + GA + G + + YT Sbjct: 243 HTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHV 281 >gi|163736741|ref|ZP_02144160.1| phage integrase [Phaeobacter gallaeciensis BS107] gi|161390611|gb|EDQ14961.1| phage integrase [Phaeobacter gallaeciensis BS107] Length = 333 Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 70/339 (20%), Positives = 126/339 (37%), Gaps = 11/339 (3%) Query: 1 MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60 M L +VT + + G++ YYFR+G + P F AY + +G + K+ Sbjct: 1 MVKKLER-KYVTTKTVK-GRVYYYFRRGETYQRLPNDPDSQEFDNAYWAIRSGRSQKQ-- 56 Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 TT + LI Y ++ + + + + I K+G D+ K+ +++ Sbjct: 57 ------TKTTFEALIVSYYQTPEFKDRKPRVQQEYRRTLELIREKNGPKDFTKLRRRNVI 110 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + ++ T A + + +L + A+ E++ NP V++ K P K Sbjct: 111 AARDAYADTWRKANAMVEMISILSRHAIDLEWITANPASGVKKLKGGEYQPWPAAKLRAF 170 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 + A+ + +G R D H S+ +KT + V P+ Sbjct: 171 EAYCESGSLEWELTAYMLGIGTGQRIGDVIGMEWAHYDGQFISVVQEKTAARLWVACPEF 230 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISAD 299 L P + + + A K G HG R +A A+ Sbjct: 231 LRTYLDNLPRSGRFIIAQSLHKGVAKRTIQQRVMAVREKIGAQAFVIHGWRYTAAVHLAE 290 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338 AGA+ E+ A G KT++ + Y A++ RL R Sbjct: 291 AGASDSEIQAVTGHKTLEMVKKYRNQANQKRLSQAAQAR 329 >gi|315658225|ref|ZP_07911097.1| tyrosine recombinase XerD [Staphylococcus lugdunensis M23590] gi|315496554|gb|EFU84877.1| tyrosine recombinase XerD [Staphylococcus lugdunensis M23590] Length = 295 Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 45/277 (16%), Positives = 100/277 (36%), Gaps = 24/277 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHT 129 +I EY K L+ N+ ++ D+ I + I+ + Sbjct: 4 IIEEYLKFIQIEKGLSPNTIGAYRRDLDKYKLYLETRHIEHIDFIDRQTIQECLGYLIDQ 63 Query: 130 PSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 SSA +F++++R ++A+R++Y A +P + +E PK + + +++ + Sbjct: 64 GSSAKSLARFISTIRSFHQFALREKYAAKDPTVLLETPKYEKKLPDVLEIDEVVRLLEAP 123 Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 G + R E + +G+R S+ ++++ + ++ + L D Sbjct: 124 DLSKKNGYRDRTILELMYATGIRVSELVHIEIENINVIMGFVRVFGKGDKERIIPLGDTV 183 Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289 + L F+N + ++ K K+ + K+ H + Sbjct: 184 IDYLKTYMKEIRPQLLKSTVTNVLFLNMHGKPLSRQGIWKMIKQYGIKSNITKTLTPHTL 243 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 R AT + GA + G + + YT + Sbjct: 244 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVS 280 >gi|16803994|ref|NP_465479.1| hypothetical protein lmo1955 [Listeria monocytogenes EGD-e] gi|47097098|ref|ZP_00234668.1| integrase/recombinase XerD [Listeria monocytogenes str. 1/2a F6854] gi|224498595|ref|ZP_03666944.1| hypothetical protein LmonF1_02414 [Listeria monocytogenes Finland 1988] gi|224501245|ref|ZP_03669552.1| hypothetical protein LmonFR_01770 [Listeria monocytogenes FSL R2-561] gi|254827160|ref|ZP_05231847.1| integrase/recombinase XerD [Listeria monocytogenes FSL N3-165] gi|254899348|ref|ZP_05259272.1| hypothetical protein LmonJ_06029 [Listeria monocytogenes J0161] gi|254912513|ref|ZP_05262525.1| tyrosine recombinase XerD [Listeria monocytogenes J2818] gi|254936840|ref|ZP_05268537.1| integrase/recombinase XerD [Listeria monocytogenes F6900] gi|255028942|ref|ZP_05300893.1| hypothetical protein LmonL_06711 [Listeria monocytogenes LO28] gi|34222939|sp|Q8Y5V0|XERD_LISMO RecName: Full=Tyrosine recombinase xerD gi|16411408|emb|CAD00033.1| lmo1955 [Listeria monocytogenes EGD-e] gi|47014543|gb|EAL05506.1| integrase/recombinase XerD [Listeria monocytogenes str. 1/2a F6854] gi|258599542|gb|EEW12867.1| integrase/recombinase XerD [Listeria monocytogenes FSL N3-165] gi|258609436|gb|EEW22044.1| integrase/recombinase XerD [Listeria monocytogenes F6900] gi|293590498|gb|EFF98832.1| tyrosine recombinase XerD [Listeria monocytogenes J2818] Length = 297 Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 44/279 (15%), Positives = 94/279 (33%), Gaps = 26/279 (9%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHI---RSGVE 124 LI ++ L+ N+ ++E + D + I + Sbjct: 3 DLIEDFLHFLIVERGLSANTIKAYERDLHYFVSYMDVTKELTDPNTLERSDIVGFMAFAR 62 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK- 183 +P S +++ S+R F + + ++ +P + +E PK+ + +D+++ Sbjct: 63 QEGKSPRSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQGLPKVLNLDDVEKLLS 122 Query: 184 ---SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVE--- 236 + G + + E L +GLR ++ + L + F K + Sbjct: 123 SSDTSTPLGLRDQAMMEILYATGLRVTELVSLKMDDLHLHMGFIQTIGKGDKERIIPLGK 182 Query: 237 --------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286 + L + F+N+ Q + F K A ++G+ K + Sbjct: 183 TATTVLEKYLEEARPKLRRPKYRNDFVFLNHHGQGLTRQGFWKILKGIAKESGIEKPITP 242 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 H +R AT + GA + G + + YT Sbjct: 243 HTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHV 281 >gi|223985629|ref|ZP_03635679.1| hypothetical protein HOLDEFILI_02985 [Holdemania filiformis DSM 12042] gi|223962396|gb|EEF66858.1| hypothetical protein HOLDEFILI_02985 [Holdemania filiformis DSM 12042] Length = 323 Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 45/307 (14%), Positives = 88/307 (28%), Gaps = 29/307 (9%) Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSL-AVNSRISFESYFDQIIRKSGDFDYRKITTKH 118 + S L + E+ + + + S+ ++ + + Sbjct: 4 EVTSEEAAKKQLMSVAEEFVEFIVARRSGSPATADSYGRDLERFAAYLAEKKITDFSQVD 63 Query: 119 IRSGVE-----------SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167 + K + SS + L+++R + + +R + V +NP + PK Sbjct: 64 KAVMFDYVTLLRSGKITRCKISDSSFSRMLSTLRSFYHYLIRYKGVKVNPTRGLRAPKLN 123 Query: 168 TEGIRPWTKEDMQQFKSFWSEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223 T + M + + R E + GLR S+ C + L N Sbjct: 124 RTIPEFLTFDQMMTLFDSFDLNDPAALRNRAILETMYACGLRVSEVCSLTLAELDLNERI 183 Query: 224 -IKTQKTGTIITVELPDGFMKLLAMT---------PIGKETFFINNDKQKMNATQFSIWF 273 T K V LL F++ + + Sbjct: 184 LTVTGKGDKQRIVPFYKRLRTLLTRYLRDSRALYLKEEHGFVFVSQRGAPITPRAVQLIL 243 Query: 274 KAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIR 330 AG+ H +R AT D G + G ++ + YT DR++ Sbjct: 244 AQAGQDAGLNQPLHPHILRHSFATHLLDNGVDLRTVQELLGHSSLSTTQIYTHVTVDRLK 303 Query: 331 LGIKNSR 337 + + Sbjct: 304 QSVDAAH 310 >gi|218778680|ref|YP_002429998.1| tyrosine recombinase XerD [Desulfatibacillum alkenivorans AK-01] gi|218760064|gb|ACL02530.1| tyrosine recombinase XerD [Desulfatibacillum alkenivorans AK-01] Length = 298 Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 50/282 (17%), Positives = 95/282 (33%), Gaps = 25/282 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT----TKHIRSGVESRKH 128 LI +Y L+ N+ ++ +T ++ ++ R Sbjct: 7 LIDQYMNYLLVEKGLSQNTLEAYGKDLGVFTDFLQKRKIDDLTKADTPDIVQHLIDLRAQ 66 Query: 129 T--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + + L ++R LF + +++ + NP V+ PK + +++Q Sbjct: 67 GLGARTRARHLVAIRGLFSFLEQEKIIKHNPAKLVDLPKTGLHLPDVISVVEIEQLLEAP 126 Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 +E G++ R E SGLR S+ VQ + + ++ V + Sbjct: 127 NEMDILGARDRAMMELAYASGLRVSELINVRVQDIHLDAGFVRVMGKGSKERIVPMGRQA 186 Query: 242 MKLLAMTPIGKE----------TFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289 + + F+ + M F K A KAG+ N + H + Sbjct: 187 REKIKTYMDHDRPILLKGKPGEYLFVVRGGRPMTRQAFWKLLKKYALKAGIAKNITPHTL 246 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 R A+ + GA + G + + YT A R RL Sbjct: 247 RHSFASHLLEGGADLRVVQEMLGHVDISTTQIYTHVA-RERL 287 >gi|157364345|ref|YP_001471112.1| phage integrase family protein [Thermotoga lettingae TMO] gi|259710440|sp|A8F7B4|XERC_THELT RecName: Full=Tyrosine recombinase xerC gi|157314949|gb|ABV34048.1| phage integrase family protein [Thermotoga lettingae TMO] Length = 286 Score = 151 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 41/277 (14%), Positives = 88/277 (31%), Gaps = 18/277 (6%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKHTPSSAI 134 +Y H L+ ++ +++ Q + D + + ++ HI ++ + Sbjct: 10 DYL--MHVRRLSDHTVVAYVGDVKQFLCFLIENDIELKDVSRLHIEEYIKKLSKQKTKLN 67 Query: 135 -----QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + ++S+R F + NP + PK + ++Q+ F + Sbjct: 68 STSLARKISSLRSFFNYLQLTSIKDENPVEGIRNPKIRRRIPDFLLPSEIQKLLEFSMKN 127 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--IKTQKTGTIITVELPDGFMKLLAM 247 + L L + GLR S+ C V+ L + I K V L + L Sbjct: 128 QRDYLMLSLLYFCGLRVSELCNLRVEDLSFSPAFVKITMGKGKKDRIVPLTSKLAEKLEN 187 Query: 248 TPIGK---ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGA 302 ++ + K++ + + G+ K H +R AT G Sbjct: 188 YITSCGKSPEDYLFGSQIKIHPSTVFRIVRKYTMMCGIKKRIHPHTLRHTFATHLLQKGV 247 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 + G + Y D+ + ++ Sbjct: 248 NIRVVQDLLGHSNLSTTSVYLHVVDQEK--FDAINKL 282 >gi|16801135|ref|NP_471403.1| hypothetical protein lin2069 [Listeria innocua Clip11262] gi|34222947|sp|Q92A53|XERD_LISIN RecName: Full=Tyrosine recombinase xerD gi|16414570|emb|CAC97299.1| lin2069 [Listeria innocua Clip11262] gi|313618111|gb|EFR90213.1| tyrosine recombinase XerD [Listeria innocua FSL S4-378] gi|313623100|gb|EFR93374.1| tyrosine recombinase XerD [Listeria innocua FSL J1-023] Length = 297 Score = 151 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 44/279 (15%), Positives = 95/279 (34%), Gaps = 26/279 (9%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHI---RSGVE 124 LI ++ L+ N+ ++E + D + I + Sbjct: 3 DLIDDFLHFLIVEKGLSANTIKAYERDLHYFVSYMDTSRTLTDPDTLERNDIVGFMAFAR 62 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK- 183 +P S +++ S+R F + + ++ +P + +E PK+ + +D+++ Sbjct: 63 KEGKSPRSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQSLPKVLNLDDVEKLLS 122 Query: 184 ---SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITV---- 235 + G + + E L +GLR ++ + + L F K + Sbjct: 123 SSDTSTPLGLRDQAMLEILYATGLRVTELVKLKMDDLHLQMGFIQTIGKGDKERIIPLGK 182 Query: 236 -------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286 + + L + F+N+ Q + F K A ++G+ K + Sbjct: 183 TATTVLEQYLEEARPKLRRPKYRNDFVFLNHHGQGLTRQGFWKILKGIAKESGIEKPITP 242 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 H +R AT + GA + G + + YT Sbjct: 243 HTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHV 281 >gi|149915233|ref|ZP_01903761.1| phage integrase [Roseobacter sp. AzwK-3b] gi|149810954|gb|EDM70793.1| phage integrase [Roseobacter sp. AzwK-3b] Length = 325 Score = 151 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 68/320 (21%), Positives = 122/320 (38%), Gaps = 16/320 (5%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63 +LP +V R K YF +G+ + P + F Y L G + Sbjct: 3 KRQLPKYVYA---RGRKGYPYFIRGNTCQRIFAEPGSNAFWAEYNRLLNG---------A 50 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 P T+ LI Y +S W A N+R S+E F K G D I +H+ Sbjct: 51 PTAPKRTINKLIEHYMRSPDWAKKAHNTRKSYERSFLYFRDKIGLVDPASIRRRHVNDMR 110 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 ++ TP++A + + ++ VL A+ +V + T+ W + ++ F+ Sbjct: 111 DALSATPTTANRRVAALSVLMNHAIDIGWVEHVNPARGVKQLDGTKTREAWPVDMVEAFR 170 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 + Q L FE L+ +G R D +++N ++ KT + + + Sbjct: 171 TA--ATGQTLLLFELLIGTGQRIGDVLNMQWGQIEDNGIVVRQSKTKAEVWIPFTRRLLD 228 Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSATISADAGA 302 +L + IN++ ++ W + G + HG+R +A+ A G Sbjct: 229 ML-NKTPRNALYIINHEGHRVAYNTAWKWVMDVRKQIGATDYDIHGLRHTAASELAALGM 287 Query: 303 TAHELMATYGWKTVDQAETY 322 T E+M+ G + Y Sbjct: 288 TDEEIMSITGHTSAAMVRLY 307 >gi|307944703|ref|ZP_07660042.1| putative integrase family protein [Roseibium sp. TrichSKD4] gi|307772130|gb|EFO31352.1| putative integrase family protein [Roseibium sp. TrichSKD4] Length = 392 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 76/341 (22%), Positives = 145/341 (42%), Gaps = 14/341 (4%) Query: 2 TPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYP-HESTFIPAYMSALTGSTPKREY 60 TP ++ + + G + Y + GR +R+ P S F P Y + + Sbjct: 43 TPHANKAKYLLEMPRKSGPVYYVQTRKGGRALRIQSPADSSEFWPEYGRLVGRALSDPGP 102 Query: 61 INSPRK-KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119 I+ + LI+ YR+S + SL N++ ++ ++I G ++R ++ + I Sbjct: 103 ISPTTACGRHKIAQLINAYRQSRDFTSLKPNTQKTYSCALNKIADLFGIREFRTLSRQDI 162 Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 R +++ +A QFL +R L W ++ Y P ++ + G W++E++ Sbjct: 163 RLAMDNMPI--YAANQFLQQIRQLNDWCDQRGYTDTFPAAGIKSHGKSRTGFPAWSQEEV 220 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239 + + G+Q RL + L ++G+R D R G H+++ +I QK G +T+ L Sbjct: 221 DTYLTAHPIGTQARLMIDLLRFTGMRVGDIIRLGPDHIRDGFIAITLQKNGVPVTIPLNP 280 Query: 240 G---FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA-------HGV 289 + + ++ F+ F+A AG+ +A HG+ Sbjct: 281 DLEVSIDATTPDGAKTFLTLDRFKRAFSSSKYFAQTFRAHCRAAGLEGTAARRAVSGHGL 340 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 RKF+ + G T E A +GW+ + Y++ DR R Sbjct: 341 RKFALISVLENGGTIREAQALFGWRDAAMVQHYSEELDRER 381 >gi|262089688|gb|ACY24783.1| XerD tyrosine recombinase [uncultured organism] Length = 323 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 48/293 (16%), Positives = 107/293 (36%), Gaps = 24/293 (8%) Query: 72 KWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVE---S 125 LI+EY + L+ N++ S+ Q + ++ ++ Sbjct: 31 SQLIAEYLDAIWMEKGLSHNTQESYRRDLSQFAMWLNQQGRQLIGVDPALVQDYLDIRLQ 90 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 +K + ++ +FL+ +R L+++ +R+ ++ +P ++ PK + ++ D++ + Sbjct: 91 QKLSSRTSARFLSCVRGLYRYLLRESRISESPVALIDNPKLSRSLPKSLSETDVEALLAA 150 Query: 186 WSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDG 240 G + R E L GLR ++ + + ++ + + + Sbjct: 151 PDLSDPVGLRDRTMLEVLYACGLRVTELVELTMPQINLRQNVVRVMGKGSKERLIPMGEE 210 Query: 241 FMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288 L + E F + Q M F K A AG+ K S H Sbjct: 211 AAAWLVRYLREARPVLLNNMPDEVVFPSTRAQPMTRQTFWYRIKHWAMVAGIKKDLSPHT 270 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 +R AT + GA + G + + YT A ++R+ ++++ Sbjct: 271 LRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVA-KLRMKQQHAQHHPR 322 >gi|88860260|ref|ZP_01134898.1| site-specific tyrosine recombinase XerD [Pseudoalteromonas tunicata D2] gi|88817458|gb|EAR27275.1| site-specific tyrosine recombinase XerD [Pseudoalteromonas tunicata D2] Length = 301 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 37/276 (13%), Positives = 96/276 (34%), Gaps = 20/276 (7%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHT 129 + ++ ++ ++ N+ ++ + + ++ + ++ + R Sbjct: 14 FLEQFLEAIWLEQGVSENTLAAYRTDLTKFAEFILPKGLIEVEQQDVQYYLAHRLDNGFK 73 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--- 186 P S + +++++ +++ +R++ ++ NP + +PK + ++E++ + Sbjct: 74 PRSTARTVSALKRFYQYYLREKQLSTNPMTHIGQPKAGQSLPKTLSEEEVGRLLDAPDLE 133 Query: 187 -SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKL 244 G + + E L +GLR S+ ++ + K V + + + Sbjct: 134 EPIGLRDKAMLELLYATGLRVSELVGLRIEQINLRQAVVFVKGKGNKERLVPMGEEALDC 193 Query: 245 LAMTP---------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFS 293 + + F + M F K A AG+ S H +R Sbjct: 194 IERFIKEGRPQLIKHATDFVFPSKRGIGMTRQTFWHRIKHYALVAGIESELSPHTLRHAF 253 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + GA + G + + YT A Sbjct: 254 ATHLINHGADLRVVQMMLGHSDLSTTQIYTHVAKER 289 >gi|319400839|gb|EFV89058.1| tyrosine recombinase XerD [Staphylococcus epidermidis FRI909] Length = 295 Score = 150 bits (379), Expect = 3e-34, Method: Composition-based stats. Identities = 46/277 (16%), Positives = 99/277 (35%), Gaps = 24/277 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVES---R 126 +I EY L+ N+ ++ + D I + I+ + Sbjct: 4 IIDEYLNFIQIEKGLSNNTIGAYRRDLKKYKDYLEDNKISHIDFIDRQIIQECLGHLIDM 63 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-- 184 + S +F++++R ++A+R++Y A +P + +E PK + + ++ Sbjct: 64 GQSSKSLARFISTIRSFHQFALREKYAAKDPTVLIETPKYEKKLPDVLEINEVIALLETP 123 Query: 185 --FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 + G + R E L +G+R ++ + V+ + + ++ V L D Sbjct: 124 DLAKNNGYRDRTMLELLYATGMRVTEIIQLDVEDVNLMMGFVRVFGKGNKERIVPLGDTV 183 Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289 ++ L F+N + ++ K KA +NK+ H + Sbjct: 184 IEYLTTYIETVRPQLLKQTTTQALFLNMHGKSLSRQGIWKIIKQYGLKANINKTLTPHTL 243 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 R AT + GA + G + + YT + Sbjct: 244 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVS 280 >gi|289435303|ref|YP_003465175.1| integrase/recombinase XerD [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171547|emb|CBH28093.1| integrase/recombinase XerD [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 297 Score = 150 bits (379), Expect = 3e-34, Method: Composition-based stats. Identities = 42/279 (15%), Positives = 92/279 (32%), Gaps = 26/279 (9%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD-FDYRK---ITTKHI---RSGVE 124 LI ++ L+ N+ ++E + + I + Sbjct: 3 DLIDDFLHFLIVEKGLSANTIKAYERDLHYFVSYINTARPLTDPNTLERSDIVGFMAFAR 62 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK- 183 + S +++ S+R F + + ++ +P + +E PK+ + +D++ Sbjct: 63 KEGKSARSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQGLPKVLNLDDVELLLS 122 Query: 184 ---SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITV---- 235 + G + + E L +GLR ++ + + L F K + Sbjct: 123 SSDTSTPLGLRDQAMMEILYATGLRVTELVQLKMDDLHLQMGFIQTIGKGDKERIIPLGK 182 Query: 236 -------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286 + + L + F+N+ Q + F K A ++G+ K + Sbjct: 183 TATTVLEQYLEEARPKLRRPKYRNDFVFLNHHGQGLTRQGFWKILKGIAKESGIEKPITP 242 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 H +R AT + GA + G + + YT Sbjct: 243 HTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHV 281 >gi|212224162|ref|YP_002307398.1| integrase/recombinase [Thermococcus onnurineus NA1] gi|254799323|sp|B6YWN8|XERCL_THEON RecName: Full=Probable tyrosine recombinase xerC-like gi|212009119|gb|ACJ16501.1| integrase/recombinase [Thermococcus onnurineus NA1] Length = 282 Score = 150 bits (379), Expect = 3e-34, Method: Composition-based stats. Identities = 44/285 (15%), Positives = 95/285 (33%), Gaps = 18/285 (6%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 + +I EY + N+ + Y + + G+ R + + ++ Sbjct: 4 INEVIEEYETYLDLEGKSPNTIRMYSYYVRRYLEGGGELKARS--ALRFLAKLRREGYSN 61 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 S + ++R F++ + PK + T+E++++ S Sbjct: 62 KSLNLVVQALRSYFRFEG-----YDEEAEKLRPPKVPKSLPKSLTREEVRKILSVIPPTK 116 Query: 191 -QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELP-------DG 240 + RL F L +GLR S+ C + ++ K V +P Sbjct: 117 KRDRLIFLLLYGAGLRVSELCNLKKSDVDFERSLIIVRGGKGAKDRVVPIPAFLLEGIKA 176 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADA 300 +++ K K++ K +AG+ + H +R AT + Sbjct: 177 YLETRDDDSEYLIVEDRRERKDKLSPKTVWYLLKKYGDRAGIRVTPHMLRHSFATHMLEN 236 Query: 301 GATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKNSRRISSVVD 344 G + G + + YTK + +R + +R I +++ Sbjct: 237 GVDIRAIQELLGHSNLSTTQIYTKVTVEHLRKAQEKARLIEGLIE 281 >gi|73662564|ref|YP_301345.1| site-specific recombinase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|82582339|sp|Q49XU5|XERD_STAS1 RecName: Full=Tyrosine recombinase xerD gi|72495079|dbj|BAE18400.1| site-specific recombinase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 295 Score = 150 bits (379), Expect = 3e-34, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 99/288 (34%), Gaps = 25/288 (8%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRK 127 +I EY K L+ N+ ++ + I I+ + Sbjct: 2 DTIIEEYLKFIQLEKGLSSNTIGAYRRDLKKYNTFLELQKISHIDFIDRASIQQCLGYLH 61 Query: 128 HTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 +SA +F++++R ++A+R++Y A +P + +E PK + ++ Sbjct: 62 DNGASAKSLARFISTIRSFHQFALREKYAAKDPTVLIETPKYDRKLPDVLEINEVLALLE 121 Query: 185 ----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD 239 G + R E L +G+R S+ + ++ + F K V L D Sbjct: 122 TPNLAKINGYRDRTMLELLYATGMRVSELIQIELEDVNLIMGFVKVFGKGNKERIVPLGD 181 Query: 240 GFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287 ++ L F+N + ++ K A KA + K + H Sbjct: 182 TVIEYLKTYIETIRPQLLKKTVTNTLFLNMHGKPLSRQAIWKMIKQNAIKANITKSLTPH 241 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIK 334 +R AT + GA + G + + YT + +IR Sbjct: 242 TLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYN 289 >gi|296133169|ref|YP_003640416.1| tyrosine recombinase XerD [Thermincola sp. JR] gi|296031747|gb|ADG82515.1| tyrosine recombinase XerD [Thermincola potens JR] Length = 295 Score = 150 bits (379), Expect = 3e-34, Method: Composition-based stats. Identities = 52/285 (18%), Positives = 111/285 (38%), Gaps = 27/285 (9%) Query: 72 KWLISE--YRKSAHWGSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESR 126 K LI E Y + LA N+ S+ ++ + K G + ++ + + Sbjct: 2 KALIEEFIYYLTVE-RGLAENTLESYARDLERYSAFLSKHGITKFEATNKTNVMAYLLHL 60 Query: 127 KHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM---- 179 + S+ + L S++ +++ +R++++ +P +++E PK + + R + E++ Sbjct: 61 QKQGKATSTISRHLASLKSFYQYLLREKHIEQDPTVNLESPKLQKKLPRVLSVEEVEILL 120 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELP 238 Q + GS+ + E L +G+R S+ + H+ + ++ + + Sbjct: 121 NQPRLNEPAGSRDKAMLELLYATGIRVSELISLDLDHVNLEMGYVRCFGKGSKERIIPIG 180 Query: 239 DGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286 K + F+N+ ++M F K A +AG+ K + Sbjct: 181 SLAKKYVEEYLHRGRVRLIKSKGETALFVNHHGRRMTRQGFWKIIKKYAREAGIKKDITP 240 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 H +R AT + GA + G + + YT R RL Sbjct: 241 HTLRHSFATHLLENGADLRSVQEMLGHADITTTQIYTHLT-RGRL 284 >gi|242242770|ref|ZP_04797215.1| tyrosine recombinase XerD [Staphylococcus epidermidis W23144] gi|242233906|gb|EES36218.1| tyrosine recombinase XerD [Staphylococcus epidermidis W23144] Length = 295 Score = 150 bits (378), Expect = 3e-34, Method: Composition-based stats. Identities = 46/277 (16%), Positives = 100/277 (36%), Gaps = 24/277 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVES---R 126 +I EY L+ N+ ++ + D I + I+ + Sbjct: 4 IIDEYLNFIQIEKGLSNNTIGAYRRDLKKYKDYLEDNKISHIDFIDRQIIQECLGHLIDM 63 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-- 184 + S +F++++R ++A+R++Y A +P + +E PK + + +++ Sbjct: 64 GQSSKSLARFISTIRSFHQFALREKYAAKDPTVLIETPKYEKKLPDVLEIDEVIALLETP 123 Query: 185 --FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 + G + R E L +G+R ++ + V+ + + ++ V L D Sbjct: 124 DLAKNNGYRDRTMLELLYATGMRVTEIIQLDVEDVNLMMGFVRVFGKGNKERIVPLGDTV 183 Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289 ++ L F+N + ++ K KA +NK+ H + Sbjct: 184 IEYLTTYIETVRPQLLKQTTTQALFLNMHGKSLSRQGIWKIIKQYGLKANINKTLTPHTL 243 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 R AT + GA + G + + YT + Sbjct: 244 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVS 280 >gi|91202903|emb|CAJ72542.1| similar to site-specific tyrosine recombinase [Candidatus Kuenenia stuttgartiensis] Length = 298 Score = 150 bits (378), Expect = 3e-34, Method: Composition-based stats. Identities = 42/274 (15%), Positives = 91/274 (33%), Gaps = 18/274 (6%) Query: 74 LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVE---SR 126 I Y + + + ++ + Q + G D +T +R + + Sbjct: 13 FIDRYLAYIENDRNYSPQTLRAYRNDLGQYLSFLKGEGCTDLAGVTRLQLRKYLAFLKKK 72 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-- 184 + ++ + L S+R L+K+ + + NP ++ PK + + D + + Sbjct: 73 NPSKTTVARKLASIRSLYKFLCQHGILEYNPVEQIKTPKTDKKLPGFMSVNDTEILLNQP 132 Query: 185 --FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-----IITVEL 237 G + + E L +G+R S+ + + + +K + G+ + Sbjct: 133 DTCNLSGLRDKAIMETLYSTGMRVSELVGINIADIDFHSGIVKVRGKGSKERILPVGNHA 192 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA--GVNKSAHGVRKFSAT 295 + L E F+N ++ + + KA + S H R AT Sbjct: 193 LNAIQLYLEKRKADNEALFLNKFHGRLTERSVARMIEKYMKKAAMHLRVSPHTFRHSFAT 252 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 D GA + G ++ + YT Sbjct: 253 HLLDNGADLRAVQEFLGHSSLSTTQIYTHVTTER 286 >gi|228476153|ref|ZP_04060861.1| tyrosine recombinase XerD [Staphylococcus hominis SK119] gi|314936376|ref|ZP_07843723.1| tyrosine recombinase XerD [Staphylococcus hominis subsp. hominis C80] gi|228269976|gb|EEK11456.1| tyrosine recombinase XerD [Staphylococcus hominis SK119] gi|313654995|gb|EFS18740.1| tyrosine recombinase XerD [Staphylococcus hominis subsp. hominis C80] Length = 295 Score = 150 bits (378), Expect = 3e-34, Method: Composition-based stats. Identities = 49/287 (17%), Positives = 104/287 (36%), Gaps = 25/287 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHT 129 +I E+ K L+ N+ ++ + + I + I+ + Sbjct: 4 IIEEFLKFIQIEKGLSDNTIGAYRRDLAKYEEYMKEHKIAHIDFIDRQVIQECLGYLIDQ 63 Query: 130 PSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 +SA +F++++R ++A+R++Y A +P + +E PK + + E++ Q Sbjct: 64 GASAKSMARFISTIRNFHQFALREKYAAKDPTVLIETPKYEKKLPDVLEVEEVLQLLETP 123 Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 G + R E L +G+R S+ + ++ + + ++ + L D Sbjct: 124 DLNKKNGYRDRTILELLYATGMRVSELIQINIEDINLIMGFVRVFGKGNKERIIPLGDTV 183 Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289 ++ L F+N + + K KA +NK+ H + Sbjct: 184 IEFLDTYLEKVRPQLLKKTITNVLFLNMHGRPLTRQGIWKMIKQYGLKANINKTLTPHTL 243 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKN 335 R AT + GA + G + + YT + +IR Sbjct: 244 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRQMYNQ 290 >gi|18978240|ref|NP_579597.1| integrase-recombinase protein [Pyrococcus furiosus DSM 3638] gi|73920477|sp|Q8TZV9|XERC_PYRFU RecName: Full=Probable tyrosine recombinase xerC-like gi|18894057|gb|AAL81992.1| integrase-recombinase protein [Pyrococcus furiosus DSM 3638] Length = 286 Score = 150 bits (378), Expect = 3e-34, Method: Composition-based stats. Identities = 38/292 (13%), Positives = 106/292 (36%), Gaps = 19/292 (6%) Query: 67 KPTTLK-WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 + TL+ ++ E+ + N+ + + + + + + + + + Sbjct: 2 REKTLRSEVLEEFATYLELEGKSKNTIRMYTYFLSKFLEE--GYSPTARDALRFLAKLRA 59 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + ++ S + +++ FK+ + PK + T+E++++ Sbjct: 60 KGYSIRSINLVVQALKAYFKFEG-----LNEEAERLRNPKIPKTLPKSLTEEEVKKLIEV 114 Query: 186 WSEGS-QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--IKTQKTGTIITVELPDGFM 242 + + RL L +GLR S+ C ++ + ++ K G T+ +P + Sbjct: 115 IPKDKIRDRLIVLLLYGTGLRVSELCNLKIEDINFEKGFLTVRGGKGGKDRTIPIPQPLL 174 Query: 243 KLLAMTPIGKETFFIN-------NDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSAT 295 + + +K+K++ K KAG+ + H +R AT Sbjct: 175 TEIKNYLRRRTDDSPYLFVESRRKNKEKLSPKTVWRILKEYGRKAGIKVTPHQLRHSFAT 234 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKNSRRISSVVDSD 346 + G + G ++ + YT+ A ++ ++ + + +++ + Sbjct: 235 HMLERGIDIRIIQELLGHASLSTTQIYTRVTAKHLKEAVERANLLENLIGGE 286 >gi|192360546|ref|YP_001981926.1| tyrosine recombinase XerD [Cellvibrio japonicus Ueda107] gi|190686711|gb|ACE84389.1| tyrosine recombinase XerD [Cellvibrio japonicus Ueda107] Length = 299 Score = 150 bits (378), Expect = 4e-34, Method: Composition-based stats. Identities = 53/280 (18%), Positives = 100/280 (35%), Gaps = 24/280 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSG---DFDYRKITTKHIRSGVESRKH---TPSSAIQFLT 138 L+ N++ S+ +Q D +T +++ + R + S +FL+ Sbjct: 20 KGLSENTQESYRRDLEQFAGWLAAGQGPDLLAVTATEVQAYLAWRHQQHLSSRSTARFLS 79 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRL 194 +R ++ +R+ ++ NP VE PK + ++ D++ S G + + Sbjct: 80 CLRGFYRLQIREGHLHDNPLALVENPKLSRSLPKSLSESDVENLLSAPDVDDPVGLRDKT 139 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT----- 248 E L GLR S+ + + ++ V + + L Sbjct: 140 MLEVLYACGLRVSELVGLTMSQVNLRQNVVRVMGKGSKERLVPMGEEAAAWLQRYLREAR 199 Query: 249 -----PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301 E F ++ Q M F K A AG+NK S H +R AT + G Sbjct: 200 PVLLNNFPDEVVFPSSRGQPMTRQTFWYRIKHWAQVAGINKPLSPHTLRHAFATHLLNHG 259 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 A + G + + YT A R+R+ +++ Sbjct: 260 ADLRVVQLLLGHSDLSTTQIYTHVA-RLRMKHQHAEHHPR 298 >gi|254468110|ref|ZP_05081516.1| tyrosine recombinase XerD [beta proteobacterium KB13] gi|207086920|gb|EDZ64203.1| tyrosine recombinase XerD [beta proteobacterium KB13] Length = 298 Score = 150 bits (378), Expect = 4e-34, Method: Composition-based stats. Identities = 52/278 (18%), Positives = 96/278 (34%), Gaps = 21/278 (7%) Query: 74 LISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TP 130 ++ ++ S L+ N+ S+ Q+ + D IT I+ + R Sbjct: 11 IVDQFINSLWLEDGLSKNTLDSYRYDLKQLAIWYSNRDIAHITKSEIQEYLAYRFPLSKS 70 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-- 188 S + L +R +++ VR+ + +P L +E PK + + ++++ + + Sbjct: 71 RSIARLLACLRRFYRYLVRENIIHEDPTLMIEAPKPSKALPKSLNENEVEKLLNAPNISD 130 Query: 189 --GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLL 245 G + R E L GLR S+ V + N I+ V + + + Sbjct: 131 DQGLRDRAMLELLYACGLRVSELITIMVTEVSLNDGVIRITGKGDKTRLVPMGEEASHWI 190 Query: 246 AMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293 + F+ M F K A +G+ S H +R Sbjct: 191 EQYLKSSRDNLLKEKKSKYLFVTLRGAAMTRQAFWYLIKRYAVASGIKHAISPHVLRHAF 250 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 AT + GA + G + + YT A R RL Sbjct: 251 ATHLLNHGADLRVVQMLLGHSDISTTQIYTHVA-RERL 287 >gi|326692503|ref|ZP_08229508.1| tyrosine recombinase XerD [Leuconostoc argentinum KCTC 3773] Length = 298 Score = 149 bits (377), Expect = 4e-34, Method: Composition-based stats. Identities = 46/304 (15%), Positives = 93/304 (30%), Gaps = 32/304 (10%) Query: 68 PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVE 124 T+ I++Y L+ N+ S+ Q + + + + Sbjct: 2 TPTINLAIADYLHYIRIERGLSDNTINSYRQDLTQFGAYLTAEKLTLEAVDHVVVLAWLN 61 Query: 125 SRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + + +S I+ +TS+R F + +++ V NP ++ PK+ T + ++ Sbjct: 62 QLRLVGKSNNSVIRMVTSLRKFFGYLAQEKIVLPNPMRDIQPPKKATHLPAVLSVAEIDA 121 Query: 182 FK----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVE 236 + R E + +GLR S+ + L + K + Sbjct: 122 LLAVPTDTTPLDIRNRTLIEVMYATGLRVSELVNLKLSDLHLQLGLIQTIGKGDKERIIP 181 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAGV--NK 284 + + L + K +AG+ + Sbjct: 182 IGEVAADWLTRYFASSRLALLKGKASPYVFLNDRGGQLTRQGVWKIIKKLVVEAGITKDV 241 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 S H +R AT + GA + G + + YT + +R+S V D Sbjct: 242 SPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHISK---------KRLSEVYD 292 Query: 345 SDDP 348 P Sbjct: 293 QYHP 296 >gi|260462715|ref|ZP_05810921.1| integrase family protein [Mesorhizobium opportunistum WSM2075] gi|259031621|gb|EEW32891.1| integrase family protein [Mesorhizobium opportunistum WSM2075] Length = 432 Score = 149 bits (377), Expect = 4e-34, Method: Composition-based stats. Identities = 81/365 (22%), Positives = 141/365 (38%), Gaps = 32/365 (8%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGST-PKREYINSPRKK 67 P ++ RHGK+ + +R R + LP P + F AY +A+ G PK + P Sbjct: 6 PGLSSYTDRHGKLRWRYRTKE-RVVSLPAPTQPGFKDAYQAAVEGRKVPKAPVVRMPGSA 64 Query: 68 -PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK---------SGDFDYRKITTK 117 P T + S W +L S+ + ++ + D + + Sbjct: 65 LPGTFGAAFQRLKISVKWLALDEASKRKNKRLIEEFLVLRVVPDHPLIWRDVPVKNLRRI 124 Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 HI + TP A L +R L A+RQ+++ I+P +VE + W++E Sbjct: 125 HIEELLGRFIATPHKAKHLLVGIRKLVYVALRQDWIEIDPTAAVEWRPAYAGW-KAWSRE 183 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH-----------------LQNN 220 M QF++ W G+ R + L+ G R D Sbjct: 184 AMAQFENRWQLGTAARTCYGLALWLGNRRGDVAGLRWDQRVTRRVFIDGVERHFDGFDIV 243 Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280 K + G + V + ++L ET +N + +A + A Sbjct: 244 QGKNKGRTGGKRLFVPITPMLSEILDAADRRGETVLVNAYGEPFSAKSLTGMMAHWCKLA 303 Query: 281 GVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338 G+ K + HG+RK A+A A+ ++M G +D AE Y++ A ++RL ++ R Sbjct: 304 GLPKGLTLHGLRKSLGVYLAEAEASTRQMMDVLGHDDIDHAELYSREASQVRLAVQGMDR 363 Query: 339 ISSVV 343 + +V Sbjct: 364 VVRLV 368 >gi|302389650|ref|YP_003825471.1| tyrosine recombinase XerC [Thermosediminibacter oceani DSM 16646] gi|302200278|gb|ADL07848.1| tyrosine recombinase XerC [Thermosediminibacter oceani DSM 16646] Length = 298 Score = 149 bits (377), Expect = 5e-34, Method: Composition-based stats. Identities = 41/282 (14%), Positives = 87/282 (30%), Gaps = 26/282 (9%) Query: 74 LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD------FDYRKITTKHIRSGVESR 126 I + + + N+ ++ + Q I IT IR + Sbjct: 5 AIDSFLTYISAAKNQSPNTLKAYANDLGQFIEYLEQNKISKTKTLNDITHLDIRGFLAYL 64 Query: 127 KHTPS---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 K + + + + L+++R F++ + V+ +P V+ K + +++ Sbjct: 65 KESGASKKTIARKLSAIRSFFRYLSTEGLVSEDPTKMVQGMKLPKKLPLFLYPAEIEALL 124 Query: 184 SFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD 239 S G + R E L +G+R S+ ++ + F I K V Sbjct: 125 SAPGQDVLGIRDRAIMELLYATGMRVSELVSLKLKDVNLGANFIIVFGKGSKERVVFFGS 184 Query: 240 GFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287 + L + + F+N + ++ + S H Sbjct: 185 KAAESLEEYLRKSRPYLVKNLTCDYLFLNKNGTRLTDRSVRRIIDKYVKLLSLNAKISPH 244 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R AT + GA + G ++ + YT Sbjct: 245 TLRHTFATHMLNNGADLKTVQELLGHVSLSTTQIYTHVTKER 286 >gi|57866964|ref|YP_188637.1| tyrosine recombinase XerD [Staphylococcus epidermidis RP62A] gi|293366542|ref|ZP_06613219.1| integrase/recombinase XerD [Staphylococcus epidermidis M23864:W2(grey)] gi|81674519|sp|Q5HP53|XERD_STAEQ RecName: Full=Tyrosine recombinase xerD gi|57637622|gb|AAW54410.1| tyrosine recombinase XerD [Staphylococcus epidermidis RP62A] gi|291319311|gb|EFE59680.1| integrase/recombinase XerD [Staphylococcus epidermidis M23864:W2(grey)] gi|329725406|gb|EGG61889.1| tyrosine recombinase XerD [Staphylococcus epidermidis VCU144] gi|329735284|gb|EGG71576.1| tyrosine recombinase XerD [Staphylococcus epidermidis VCU045] Length = 295 Score = 149 bits (377), Expect = 5e-34, Method: Composition-based stats. Identities = 46/277 (16%), Positives = 99/277 (35%), Gaps = 24/277 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVES---R 126 +I EY L+ N+ ++ + D I + I+ + Sbjct: 4 IIEEYLNFIQIEKGLSNNTIGAYRRDLKKYKDYLEDNKISHIDFIDRQIIQECLGHLIDM 63 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + S +F++++R ++A+R++Y A +P + +E PK + + +++ Sbjct: 64 GQSSKSLARFISTIRSFHQFALREKYAAKDPTVLIETPKYEKKLPDVLEIDEVIALLETP 123 Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 G + R E L +G+R ++ + V+ + + ++ V L D Sbjct: 124 DLTKNNGYRDRTMLELLYATGMRVTEIIQLDVEDVNLMMGFVRVFGKGNKERIVPLGDTV 183 Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289 ++ L F+N + ++ K KA +NK+ H + Sbjct: 184 IEYLTTYIETVRPQLLKQTTTQALFLNMHGKSLSRQGIWKIIKQYGLKANINKTLTPHTL 243 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 R AT + GA + G + + YT + Sbjct: 244 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVS 280 >gi|217967855|ref|YP_002353361.1| tyrosine recombinase XerD [Dictyoglomus turgidum DSM 6724] gi|217336954|gb|ACK42747.1| tyrosine recombinase XerD [Dictyoglomus turgidum DSM 6724] Length = 296 Score = 149 bits (377), Expect = 5e-34, Method: Composition-based stats. Identities = 40/275 (14%), Positives = 94/275 (34%), Gaps = 20/275 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESR--KHT 129 + ++ + +++ N+ S+ + I + + + + + + S ++ Sbjct: 5 LEDFLFYLKFEKNMSPNTIDSYRRDLEDFIIFLQKEKVNIKNLKREEWQRYLVSLYNRYK 64 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--- 186 S + ++S+R K+ +R+ Y+ N + PK ++++ F Sbjct: 65 IKSIARKISSIRSFLKFLLREGYINRNYSSFMIIPKIPMYLPEILDNKEIENFLKIPDPL 124 Query: 187 -SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKL 244 G + E +G+R S+ VQ + ++ + L D ++ Sbjct: 125 SPLGIRNIAILETFYATGMRVSELVNLDVQSINLEEKYVRCFGKGDKERIIPLGDYAVES 184 Query: 245 LAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294 L + +++F ++K +++ K + G+ K S H R A Sbjct: 185 LKKYLLVRDSFNPKDEKALFLNKKGERITRQGVWFIIKTYSKILGLPKKVSPHTFRHSFA 244 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 T GA + G V + YT Sbjct: 245 THLLSNGADIRIVQELLGHSDVATTQIYTHIVSSK 279 >gi|116873397|ref|YP_850178.1| integrase/recombinase [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742275|emb|CAK21399.1| integrase/recombinase [Listeria welshimeri serovar 6b str. SLCC5334] Length = 297 Score = 149 bits (376), Expect = 6e-34, Method: Composition-based stats. Identities = 43/279 (15%), Positives = 94/279 (33%), Gaps = 26/279 (9%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHI---RSGVE 124 LI ++ L+ N+ +++ + D + I + Sbjct: 3 DLIEDFLHFLIVEKGLSANTIKAYQRDLRYFVSYMETSKNLTDPNILERSDIVGFMAFAR 62 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK- 183 + S +++ S+R F + + ++ +P + +E PK+ + +D+++ Sbjct: 63 QEGKSARSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQSLPKVLNLDDVEKLLS 122 Query: 184 ---SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITV---- 235 G + + E L +GLR ++ R + L + F K + Sbjct: 123 SSDISTPLGLRDQAMMEILYATGLRVTELVRLKMDDLHLHMGFIQTIGKGDKERIIPLGK 182 Query: 236 -------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286 + + L + F+N+ Q + F K A ++G+ K + Sbjct: 183 TATTVLEQYLEEARPKLRRPKYRNDFVFLNHHGQGLTRQGFWKILKGIAKESGIEKPITP 242 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 H +R AT + GA + G + + YT Sbjct: 243 HTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHV 281 >gi|218283546|ref|ZP_03489536.1| hypothetical protein EUBIFOR_02126 [Eubacterium biforme DSM 3989] gi|218215814|gb|EEC89352.1| hypothetical protein EUBIFOR_02126 [Eubacterium biforme DSM 3989] Length = 291 Score = 149 bits (376), Expect = 6e-34, Method: Composition-based stats. Identities = 42/273 (15%), Positives = 92/273 (33%), Gaps = 19/273 (6%) Query: 72 KWLISEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-- 128 LI + K + + + + S+++ +Q + + + Sbjct: 2 DELIERFLKYIYRKNTQSEKTIESYKNDLNQFKEYLTSQSIDSFESCDRLTFMNFLATLD 61 Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 SS + ++ R + + + NP + ++ PK+ + E++Q+F + + Sbjct: 62 HLKASSIARKMSVYRSFYTYLAEYMGIIENPLIGIQTPKKSKQIPDFLFVEEIQEFLNSY 121 Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDG 240 ++ + R+ F + GLR S+ + + N I I+ + I Sbjct: 122 NDEKDDEYRDRILFTIMYACGLRVSECVNLEWKQIDLNNRIVHIRGKGDKDRIVPFYQGF 181 Query: 241 FMKLLAMTPIGKETFFINNDKQKM------NATQFSIWFKAKATKAGV--NKSAHGVRKF 292 +LL + I++ ++ ATK G+ H +R Sbjct: 182 EKELLEYKSKFWTKYAIDDHVFVNLKGKSLSSRGVQYLMDKHATKIGMHMKLHPHMLRHS 241 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKG 325 AT D GA + G ++ + YT Sbjct: 242 FATHLLDNGADIRVVQELLGHSSLSTTQIYTHV 274 >gi|27468099|ref|NP_764736.1| site-specific recombinase [Staphylococcus epidermidis ATCC 12228] gi|251810914|ref|ZP_04825387.1| integrase/recombinase XerD [Staphylococcus epidermidis BCM-HMP0060] gi|282876077|ref|ZP_06284944.1| tyrosine recombinase XerD [Staphylococcus epidermidis SK135] gi|34222791|sp|Q7ZAJ2|XERD_STAES RecName: Full=Tyrosine recombinase xerD gi|27315645|gb|AAO04780.1|AE016748_14 site-specific recombinase [Staphylococcus epidermidis ATCC 12228] gi|251805594|gb|EES58251.1| integrase/recombinase XerD [Staphylococcus epidermidis BCM-HMP0060] gi|281295102|gb|EFA87629.1| tyrosine recombinase XerD [Staphylococcus epidermidis SK135] gi|329737213|gb|EGG73467.1| tyrosine recombinase XerD [Staphylococcus epidermidis VCU028] Length = 295 Score = 149 bits (376), Expect = 6e-34, Method: Composition-based stats. Identities = 46/277 (16%), Positives = 99/277 (35%), Gaps = 24/277 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVES---R 126 +I EY L+ N+ ++ + D I + I+ + Sbjct: 4 IIEEYLNFIQIEKGLSNNTIGAYRRDLKKYKDYLEDNKISHIDFIDRQIIQECLGHLIDM 63 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + S +F++++R ++A+R++Y A +P + +E PK + + +++ Sbjct: 64 GQSSKSLARFISTIRSFHQFALREKYAAKDPTVLIETPKYEKKLPDVLEIDEVIALLETP 123 Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 G + R E L +G+R ++ + V+ + + ++ V L D Sbjct: 124 DLTKNNGYRDRTMLELLYATGMRVTEIIQLDVEDVNLIMGFVRVFGKGNKERIVPLGDTV 183 Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289 ++ L F+N + ++ K KA +NK+ H + Sbjct: 184 IEYLTTYIETVRPQLLKQTTTQALFLNMHGKSLSRQGIWKIIKQYGLKANINKTLTPHTL 243 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 R AT + GA + G + + YT + Sbjct: 244 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVS 280 >gi|251778719|ref|ZP_04821639.1| phage integrase family protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083034|gb|EES48924.1| phage integrase family protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 380 Score = 149 bits (376), Expect = 6e-34, Method: Composition-based stats. Identities = 38/374 (10%), Positives = 114/374 (30%), Gaps = 45/374 (12%) Query: 15 RTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 R R YYF G G+R ++ +T A + + + ++ + Sbjct: 6 RKRGSSWYYYFEAGKINGKRNKIERKGGNTKKEALAALRSALNELSSTGSCVQETNMSFS 65 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 + + + N++ +++++ + + G + +++ ++ + + Sbjct: 66 DYLDYWFNEYVMKNCKYNTQQTYKTFININLKPNLGIYKLKQLNYAGLQEFLNKQYAHGY 125 Query: 132 SAIQFLTSMRVLFK-------WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 S L +R + + V L++ R ++ + E+ + Sbjct: 126 SKN-TLARLRSIITHSLEMAVFPYDLIKVNPAQYLTIPRFDNISKKNIVISIENFNKITE 184 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----------------IFSIKTQ 227 + G+ + + +G+R + C + + Sbjct: 185 RFPCGTSFYIPLQIAFNTGMRVGEVCGLTWDCVDFENKTIKVEKILIFKTKQGYEFSTPK 244 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--------------NATQFSIWF 273 +I T+ + D + +L +E + T Sbjct: 245 TKKSIRTISIGDTLINILKAHKKWQEQNKQEYGEYYNDNNFVCTKENGSFVTMTSLRYLS 304 Query: 274 KAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLG 332 K + + + H +R AT+ + GA ++ G ++ Y+ + ++ Sbjct: 305 KIVNMELQIEFNFHSLRHTHATMLLEGGANIKDIQDRLGHSSLSTTMNIYSHVTN--KMK 362 Query: 333 IKNSRRISSVVDSD 346 + +++++ Sbjct: 363 NDTVNILENMINNK 376 >gi|302389829|ref|YP_003825650.1| tyrosine recombinase XerD subunit [Thermosediminibacter oceani DSM 16646] gi|302200457|gb|ADL08027.1| tyrosine recombinase XerD subunit [Thermosediminibacter oceani DSM 16646] Length = 299 Score = 149 bits (376), Expect = 6e-34, Method: Composition-based stats. Identities = 49/277 (17%), Positives = 101/277 (36%), Gaps = 24/277 (8%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRK 127 + L+ ++ + LA N+ S+ + I I S + + Sbjct: 6 EELLKQFLEFLSVEKGLARNTIESYRRDLKSYLVFLRSQHIPDIKFTSKTTIISYLLLMQ 65 Query: 128 HTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + SS + +++ + + VR+ Y+ +P ++++ PK + + R T E++++ Sbjct: 66 KSGKASSSISRACAAIKSFYHFLVRERYIQEDPTVNLDTPKLEKKLPRVLTVEEVERLLE 125 Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239 G + + E L +G+R S+ V + ++ ++ K V + Sbjct: 126 QPDTSNPLGFRDKTMLEVLYATGIRVSELISLTVDDVNLDMGFLRCLGKGSKERIVPIGS 185 Query: 240 GFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287 + L F+N+ Q + F K A KAG+NK + H Sbjct: 186 FAVNYLRQYINDVRKKILKGKSTNILFVNHMGQALTRQGFWKIIKKYARKAGINKVITPH 245 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT + GA + G + + YT Sbjct: 246 TLRHSFATHLIENGADLRAVQEMLGHADISTTQVYTH 282 >gi|323489648|ref|ZP_08094875.1| tyrosine recombinase xerD [Planococcus donghaensis MPA1U2] gi|323396779|gb|EGA89598.1| tyrosine recombinase xerD [Planococcus donghaensis MPA1U2] Length = 300 Score = 149 bits (376), Expect = 7e-34, Method: Composition-based stats. Identities = 50/284 (17%), Positives = 104/284 (36%), Gaps = 26/284 (9%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVESR 126 K + +Y LA N+ S+E ++ + +K+ HI + + Sbjct: 5 KDALDDYIHFLRVERQLADNTLSSYERDLKVYLQYLKEVEQLESLKKVERVHILNHLRHL 64 Query: 127 K---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----M 179 K TP + + ++S+R ++ +R+ V +P + +E P+ + + E+ + Sbjct: 65 KETTKTPRTVARHISSIRSFHQFMIRERIVETDPTVHLEMPQMDKKLPNILSIEEVDALI 124 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TII----- 233 Q + + G + + E L SG+R S+ ++ + + ++ G Sbjct: 125 QVPATNKANGLRDQAMLELLYASGMRVSECINLDIEDVHLTMGFVRCTGKGGKERIIPLG 184 Query: 234 ------TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--S 285 + L + + FIN +++ F K A KAG+ K + Sbjct: 185 KSALTSCQTYLEQGRIDLVKSGEKTDALFINQRGKRLTRQGFWKLLKQHAQKAGIQKELT 244 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 H +R AT + GA + G + + YT + Sbjct: 245 PHTLRHSFATHLLENGADIRAVQEMLGHADISTTQIYTHVSKTR 288 >gi|153932007|ref|YP_001385123.1| phage integrase family site specific recombinase [Clostridium botulinum A str. ATCC 19397] gi|153935500|ref|YP_001388592.1| phage integrase family site specific recombinase [Clostridium botulinum A str. Hall] gi|152928051|gb|ABS33551.1| site-specific recombinase, phage integrase family [Clostridium botulinum A str. ATCC 19397] gi|152931414|gb|ABS36913.1| site-specific recombinase, phage integrase family [Clostridium botulinum A str. Hall] Length = 379 Score = 149 bits (375), Expect = 7e-34, Method: Composition-based stats. Identities = 41/372 (11%), Positives = 118/372 (31%), Gaps = 45/372 (12%) Query: 15 RTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 R R YYF G G+R ++ ST A + + + ++ Sbjct: 6 RKRGSSWYYYFDAGTVEGKRKKIERKGGSTKKEAETALRNALNEFENCGSLLDESNISIS 65 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR---KH 128 + K + N++++++ + I G + + +T ++ + + Sbjct: 66 DYFDYWHKEYALINCKYNTQVNYKKIIENHIKPNLGVYKLKSLTPAILQEFLNKKYRNGF 125 Query: 129 TPSSAIQFLTSMRVLFKWA------VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 ++ F + K A +++ + + + ++ + E+ ++ Sbjct: 126 AKNTLSNFYGVLSGALKMAVYPYKLIKENPMTYVTMPKYNQINNDKDDLKILSLENFKEI 185 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------------NNIFSIKT 226 + + EGS + + +G+R ++ C + Sbjct: 186 INRFPEGSNFYIPLQIAFNTGMRAAEVCGLTWDCINLKNNTITIKKIIIYKNKEWIFGTP 245 Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA--------------TQFSIW 272 + + T+ + + + +L + + K ++ Sbjct: 246 KTKSSYRTIPIGNTLVNILKHHKKHQIKNKLKYGKHYTSSNFVCTKENGELVTTNSLKYL 305 Query: 273 FKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRL 331 + + + + H +R AT+ +AGA ++ G + TY+ + ++L Sbjct: 306 SRVVNYELQIPFNFHSLRHTHATMLLEAGANIKDIQQRLGHSKISTTMDTYSHVTNTLKL 365 Query: 332 GIKNSRRISSVV 343 + R +++ Sbjct: 366 --DSVNRFETII 375 >gi|147677545|ref|YP_001211760.1| site-specific recombinase XerD [Pelotomaculum thermopropionicum SI] gi|146273642|dbj|BAF59391.1| site-specific recombinase XerD [Pelotomaculum thermopropionicum SI] Length = 295 Score = 149 bits (375), Expect = 7e-34, Method: Composition-based stats. Identities = 46/284 (16%), Positives = 104/284 (36%), Gaps = 25/284 (8%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESR- 126 + L+ E+ L+ N+ +S+ + + K+G + + + + Sbjct: 2 EKLLEEFIYHLAVERGLSENTLVSYRADLAKFISFCAKAGLKSVEQAGRDTVMAYLFQLQ 61 Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + ++ + L S+R +++AV + + +P +E PK + R + E++ Sbjct: 62 LDGRSTATISRHLASIRAFYRFAVGEGILPADPSSDLETPKPAQKLPRVLSVEEVDLLMG 121 Query: 185 FW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------- 232 G + + E L +G+R S+ ++H+ ++ G+ Sbjct: 122 QPGSGEPAGLRDKAMLELLYATGMRVSELVSLNLEHVNLENGFVRCLGKGSRERIIPVGD 181 Query: 233 ---ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287 ++ + P + F+N +++ F K A KA + K + H Sbjct: 182 VAVRWLKEYLERARYKLSKPGRTDALFVNQHGRRLTRQGFWKIIKKYARKAKIKKVITPH 241 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330 +R AT + GA + G + + YT +R+R Sbjct: 242 TLRHSFATHLLENGADLRSVQEMLGHADISTTQIYTHLTRNRLR 285 >gi|163783966|ref|ZP_02178933.1| recombinase [Hydrogenivirga sp. 128-5-R1-1] gi|159880762|gb|EDP74299.1| recombinase [Hydrogenivirga sp. 128-5-R1-1] Length = 291 Score = 149 bits (375), Expect = 7e-34, Method: Composition-based stats. Identities = 48/294 (16%), Positives = 107/294 (36%), Gaps = 23/294 (7%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRK 127 + Y + N+ ++ Q + +GD D IT I R ++S++ Sbjct: 3 ISECAELYLAYLA--DKSPNTVKNYNVDLKQFAQIAGDKDVESITKADIAKFRMVLQSKR 60 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S+ + L + F++ + E ++ +P RPK + T E++++ + Sbjct: 61 LKSSTIARKLACLNSFFQYLIDLELISSSPITKSHRPKVSNKIPSSLTHEEIKRVIE-NA 119 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247 + +L + LL +GLR ++ +++ E ++K+L Sbjct: 120 DNIMDKLIIKILLTTGLRSAEILDIRRENIIIERNGQLFNIDYIENLQEGDIAYIKVLGK 179 Query: 248 TP---------------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKF 292 + + ++ KAGV H +R Sbjct: 180 GNKERIVPLSENVLEELFNYLKKYKVSPIFPISYHSLWRRIINIGKKAGVILHPHKLRHT 239 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346 +AT++ +GA + G + Y K ++ +L I+ ++++S+ + SD Sbjct: 240 AATLALQSGAELRVIQELLGHASPLTTARYAK-VNQKQL-IEATKKLSNSIFSD 291 >gi|154483615|ref|ZP_02026063.1| hypothetical protein EUBVEN_01319 [Eubacterium ventriosum ATCC 27560] gi|149735525|gb|EDM51411.1| hypothetical protein EUBVEN_01319 [Eubacterium ventriosum ATCC 27560] Length = 295 Score = 149 bits (375), Expect = 8e-34, Method: Composition-based stats. Identities = 37/280 (13%), Positives = 84/280 (30%), Gaps = 24/280 (8%) Query: 74 LISEY-RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI------TTKHIRSGVESR 126 +I E+ + + N+ IS++ + +I + + Sbjct: 4 IIEEFILQLHTKKDTSSNTEISYKRDLTKFFEYLNIGSIEEIKNITKHDLEGYIKHLSDI 63 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 ++ + + S++ F + +E + NP + ++ PK + T + Sbjct: 64 GRATTTISRNVASIKAFFAYLYDEEIMKSNPSVGLKAPKIIKKVPEILTVSQVDALLEQP 123 Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE------ 236 S+ S + + E L +G+R ++ + + + V Sbjct: 124 SKNSPKELRDKAMLELLYATGMRVTELITLKMDDVNLAQEYVVCHDRKKERIVPFGSDAK 183 Query: 237 -----LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGV 289 + L F N M+ F K KAG+ + H + Sbjct: 184 KALVRYITDGREYLLGDNEDSVIMFPNCQGGAMSRQGFWKLIKMYGKKAGIETELTPHTL 243 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R A+ + GA + G + + Y ++ Sbjct: 244 RHSFASHLVENGADLKSVQEMLGHSDISTTQIYMTSGNKR 283 >gi|313632584|gb|EFR99578.1| tyrosine recombinase XerD [Listeria seeligeri FSL N1-067] gi|313637133|gb|EFS02675.1| tyrosine recombinase XerD [Listeria seeligeri FSL S4-171] Length = 297 Score = 149 bits (375), Expect = 8e-34, Method: Composition-based stats. Identities = 42/279 (15%), Positives = 91/279 (32%), Gaps = 26/279 (9%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD-FDYRK---ITTKHI---RSGVE 124 LI ++ L+ N+ ++E + + I + Sbjct: 3 DLIDDFLHFLIVEKGLSANTIKAYERDLHYFVSYINTARPLTDPNTLERSDIVGFMAFAR 62 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT----KEDMQ 180 + S +++ S+R F + + ++ +P + +E PK+ + + + Sbjct: 63 KEGKSARSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQGLPKVLNLDDVELLLS 122 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITV---- 235 + S G + + E L +GLR ++ + + L F K + Sbjct: 123 SSDTSTSLGLRDQAMMEILYATGLRVTELVQLKMDDLHLQMGFIQTIGKGDKERIIPLGK 182 Query: 236 -------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286 + + L + F+N+ Q + F K A ++G+ K + Sbjct: 183 TATTVLEQYLEEARPKLRRPKYRNDFVFLNHHGQGLTRQGFWKILKGIAKESGIEKPITP 242 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 H +R AT + GA + G + + YT Sbjct: 243 HTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHV 281 >gi|116513910|ref|YP_812816.1| integrase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116093225|gb|ABJ58378.1| tyrosine recombinase XerD subunit [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|325125576|gb|ADY84906.1| Integrase-recombinase [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 298 Score = 149 bits (375), Expect = 8e-34, Method: Composition-based stats. Identities = 41/277 (14%), Positives = 101/277 (36%), Gaps = 24/277 (8%) Query: 71 LKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVE 124 L I++Y + S L+ N+ +++ + + + + + + Sbjct: 4 LAEQINDYLRYSQIERGLSPNTIAAYQQDLLEFLAFVKEEQMPAWPLEAVEIDAFLAKER 63 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 SS + ++++ ++W VRQ+ +A++P ++ PKR+ T+ ++ + Sbjct: 64 DLGKANSSISRLVSTLSRFYQWLVRQQLIALDPMSQIDAPKREKRMPLALTEAEVGKLLE 123 Query: 185 FWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPD 239 G + R+ E L +G+R S++ + + N+ K + + Sbjct: 124 QPDLTTDLGIRDRVLLELLYATGMRVSEAVNLQLADVHANLQLIKVLGKGSKERLIPVSA 183 Query: 240 GFMKLLAMTPIGKETF-----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 + + ++ F+N+ ++ K +AG+ + + Sbjct: 184 LALDWIKRYLPVRDQQLLKRGKSSDYLFLNSRGGQLTRQAVWQKIKKYCQQAGIAKDVTP 243 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 H +R AT + GA + G + + YT Sbjct: 244 HTLRHSFATHLLEHGADLRVVQEILGHTDISTTQIYT 280 >gi|284048544|ref|YP_003398883.1| tyrosine recombinase XerD [Acidaminococcus fermentans DSM 20731] gi|283952765|gb|ADB47568.1| tyrosine recombinase XerD [Acidaminococcus fermentans DSM 20731] Length = 301 Score = 148 bits (374), Expect = 9e-34, Method: Composition-based stats. Identities = 52/296 (17%), Positives = 99/296 (33%), Gaps = 32/296 (10%) Query: 75 ISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HTP 130 I+ + + LA N+R S+ + + I + + K + P Sbjct: 14 INLFLEYLTVELGLAYNTRESYGRDLRLFAGWI-KKPLEDVKREDILAYMRMLKVHQYAP 72 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----W 186 +SA + L +++ F++ + ++ +P VE R + + E+++Q S Sbjct: 73 TSASRKLAALKAFFRFMTAEGFLEEDPSEVVEAGTRGVVLPKVMSLEEVKQLFSAPDLTQ 132 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLL 245 EG + R E + +G+R S+ + + G + L ++ L Sbjct: 133 PEGFRDRTMLEVMYATGMRVSELLSLKRASVNLETRYVIAYGKGAKERLIPLGQYAIQYL 192 Query: 246 AMTPIGKETFFINN-----------DKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKF 292 F+ N M +F +A KAG+ + H +R Sbjct: 193 KKYLAQVRPLFVKNGKDDDSLFLTIRGTGMTRQRFWQIIRAYGVKAGLQKPLTPHILRHS 252 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 AT D GA + G + + YT + R+ V D P Sbjct: 253 FATHMLDNGADLRTVQELLGHADISTTQIYTHLTN---------NRLKKVFDKTHP 299 >gi|327183467|gb|AEA31914.1| tyrosine recombinase xerD [Lactobacillus amylovorus GRL 1118] Length = 301 Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats. Identities = 47/278 (16%), Positives = 96/278 (34%), Gaps = 25/278 (8%) Query: 71 LKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI-----TTKHIRSGVE 124 L+ I +Y + S L+ N+ ++ ++ + + Sbjct: 6 LQDQIDDYLRFSQVERGLSTNTISAYRQDLEEYLSFIKKEGVSSWPTEASDVDAFLARQR 65 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 SS + ++SMR ++W RQ +NP L ++ PK++ ++E++ + Sbjct: 66 DLNKATSSISRLISSMRKFYQWLARQNIQKLNPMLEIDLPKKERRLPTALSREEVNRLLE 125 Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239 G + R E L +G+R S+ +Q + ++ I+ K + + Sbjct: 126 QPDVEQKLGLRDRAILETLYATGMRVSELINLELQDIHEDLGLIRVLGKGSKERLIPISP 185 Query: 240 GFMKLLAMTPIG------------KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285 + + E F+NN K+ K AG+ + + Sbjct: 186 VALHWIDKYQKQVRDPLILKSGKNDEHLFLNNRGGKLTRQAIWQMIKKYCQMAGITKDVT 245 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 H +R AT + GA + G + + YT Sbjct: 246 PHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYT 283 >gi|6648971|gb|AAF21314.1| site-specific recombinase [Staphylococcus aureus] Length = 293 Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats. Identities = 46/287 (16%), Positives = 101/287 (35%), Gaps = 25/287 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHT 129 +I EY + L+ N+ ++ + + I + I+ + Sbjct: 4 IIEEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYMTEHHISHIDFIDRQLIQECLGHLIDQ 63 Query: 130 PSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 SA +F++++R ++A+R++Y A +P + ++ PK + +++ Sbjct: 64 GQSAKSIARFISTIRSFHQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLALLETP 123 Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 G + R E L +G+R S+ ++++ + ++ V L D Sbjct: 124 DLNKINGYRDRTMLELLYATGMRVSELIHLELENVNLIMGFVRVFGKGDKERIVPLGDAV 183 Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289 ++ L F+N + ++ K KA + K+ H + Sbjct: 184 IEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKANIKKTLTPHTL 243 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKN 335 R AT + GA + G + + YT + +IR Sbjct: 244 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQ 290 >gi|312872390|ref|ZP_07732460.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 2062A-h1] gi|312873969|ref|ZP_07734005.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 2052A-d] gi|312875440|ref|ZP_07735443.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 2053A-b] gi|311088951|gb|EFQ47392.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 2053A-b] gi|311090518|gb|EFQ48926.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 2052A-d] gi|311092213|gb|EFQ50587.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 2062A-h1] Length = 296 Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats. Identities = 45/274 (16%), Positives = 94/274 (34%), Gaps = 25/274 (9%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESRKHTP- 130 + +Y + A L+ N+ +S+ + ++ I S + + Sbjct: 5 LEDYLRFAQIERGLSNNTLLSYRQDLLEYFSFLKSLGITTWEVDALIIDSFLAQERDKGK 64 Query: 131 --SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKS 184 +S + L+S+R ++W RQ + +P L ++ PK++ + + + + Sbjct: 65 AIASISRMLSSLRKFYQWLFRQNLIKQDPLLRIDSPKKEKRLPIALSTTEVTKLINMPDT 124 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-------------SIKTQKTGT 231 G + R E L +G+R S+ + + + + Sbjct: 125 TTDLGIRDRAILETLYATGMRVSEVINLNEDSIHEELHLIKVFGKGSKQRLIPISNVAMS 184 Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 I K L + ++ F+N+ K+ K AG+NK + H + Sbjct: 185 WIKKYQITVRNKTLLESGKFEKAIFLNSRGGKITRQAVWQMIKRYCQLAGINKNVTPHTL 244 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323 R AT + GA + G + + YT Sbjct: 245 RHTFATHLLENGADLRIVQEILGHSDISTTQIYT 278 >gi|325956642|ref|YP_004292054.1| tyrosine recombinase xerD [Lactobacillus acidophilus 30SC] gi|325333207|gb|ADZ07115.1| tyrosine recombinase xerD [Lactobacillus acidophilus 30SC] Length = 301 Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats. Identities = 47/278 (16%), Positives = 95/278 (34%), Gaps = 25/278 (8%) Query: 71 LKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI-----TTKHIRSGVE 124 L+ I +Y + S L+ N+ ++ ++ + + Sbjct: 6 LQDQIDDYLRFSQVERGLSTNTISAYRQDLEEYLSFIKKEGMSSWPTEASDVDAFLARQR 65 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 SS + ++SMR ++W RQ +NP L ++ PK++ + E++ + Sbjct: 66 DLNKATSSISRLISSMRKFYQWLARQNIQKLNPMLEIDLPKKERRLPTALSGEEVNRLLE 125 Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239 G + R E L +G+R S+ +Q + ++ I+ K + + Sbjct: 126 QPDVEQKLGLRDRAILETLYATGMRVSELINLELQDIHEDLGLIRVLGKGSKERLIPISP 185 Query: 240 GFMKLLAMTPIG------------KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285 + + E F+NN K+ K AG+ + + Sbjct: 186 VALHWIDKYQKQVRDPLILKSGKNDEHLFLNNRGGKLTRQAIWQMIKKYCQMAGITKDVT 245 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 H +R AT + GA + G + + YT Sbjct: 246 PHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYT 283 >gi|297616683|ref|YP_003701842.1| tyrosine recombinase XerD [Syntrophothermus lipocalidus DSM 12680] gi|297144520|gb|ADI01277.1| tyrosine recombinase XerD [Syntrophothermus lipocalidus DSM 12680] Length = 296 Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats. Identities = 39/264 (14%), Positives = 92/264 (34%), Gaps = 24/264 (9%) Query: 85 GSLAVNSRISFESYFDQII----RKSGDFDYRKITTKHIRSGVESRKHTPS---SAIQFL 137 L+ N+ ++ + ++ G D ++ + + S + L Sbjct: 16 RGLSENTLQAYRRDIGSFLVYCEKERGISDISQVKRHDVVDFLGWLLKGGRAYSSLARTL 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPR 193 ++++ F++ ++ Y+ NP ++E P+ R + ++++ + G + R Sbjct: 76 SALKSFFRFMQKERYILTNPTDNIESPQVVRRLPRVLSVSEVEKLLEQPNPVTVRGIRDR 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGK 252 E + +GLR S+ ++ + ++ K V + + + Sbjct: 136 AMLELMYATGLRVSELLALQLEDINLVAGFVRCLGKGRKERIVPVNKTSVFWVERYISRS 195 Query: 253 ETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 F+N +K++ F A +AG+ K H +R AT + Sbjct: 196 RNHLVKSSLERTLFVNAKGKKLSRQGFWKILNGYARQAGIEKEIHPHTLRHSFATHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTK 324 GA + G + + YT Sbjct: 256 GADLRAVQEMLGHADISTTQIYTH 279 >gi|309807082|ref|ZP_07701061.1| tyrosine recombinase XerD [Lactobacillus iners LactinV 03V1-b] gi|309809309|ref|ZP_07703178.1| tyrosine recombinase XerD [Lactobacillus iners SPIN 2503V10-D] gi|325911997|ref|ZP_08174399.1| tyrosine recombinase XerD [Lactobacillus iners UPII 143-D] gi|325912838|ref|ZP_08175216.1| tyrosine recombinase XerD [Lactobacillus iners UPII 60-B] gi|329921320|ref|ZP_08277758.1| tyrosine recombinase XerD [Lactobacillus iners SPIN 1401G] gi|308166512|gb|EFO68712.1| tyrosine recombinase XerD [Lactobacillus iners LactinV 03V1-b] gi|308170422|gb|EFO72446.1| tyrosine recombinase XerD [Lactobacillus iners SPIN 2503V10-D] gi|325476182|gb|EGC79346.1| tyrosine recombinase XerD [Lactobacillus iners UPII 143-D] gi|325477831|gb|EGC80965.1| tyrosine recombinase XerD [Lactobacillus iners UPII 60-B] gi|328934612|gb|EGG31116.1| tyrosine recombinase XerD [Lactobacillus iners SPIN 1401G] Length = 296 Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats. Identities = 45/274 (16%), Positives = 94/274 (34%), Gaps = 25/274 (9%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESRKHTP- 130 + +Y + A L+ N+ +S+ + ++ I S + + Sbjct: 5 LEDYLRFAQIERGLSNNTLLSYRQDLLEYFSFLKSLGITTWEVDALIIDSFLAQERDKGK 64 Query: 131 --SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKS 184 +S + L+S+R ++W RQ + +P L ++ PK++ + + + + Sbjct: 65 AIASISRMLSSLRKFYQWLFRQNLIKQDPLLRIDSPKKEKRLPTALSTTEVTKLINMPDT 124 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-------------SIKTQKTGT 231 G + R E L +G+R S+ + + + + Sbjct: 125 TTDLGIRDRAILETLYATGMRVSEVINLNEDSIHEELHLIKVFGKGSKQRLIPISNVAMS 184 Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 I K L + ++ F+N+ K+ K AG+NK + H + Sbjct: 185 WIKKYQITVRNKTLLESGKFEKAIFLNSRGGKITRQAVWQMIKRYCQLAGINKNVTPHTL 244 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323 R AT + GA + G + + YT Sbjct: 245 RHTFATHLLENGADLRIVQEILGHSDISTTQIYT 278 >gi|104773902|ref|YP_618882.1| site-specific recombinase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103422983|emb|CAI97665.1| Site-specific recombinase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 298 Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats. Identities = 41/277 (14%), Positives = 100/277 (36%), Gaps = 24/277 (8%) Query: 71 LKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVE 124 L I++Y + S L+ N+ +++ + + + + + + Sbjct: 4 LAEQINDYLRYSQIERGLSPNTIAAYQQDLLEFLAFVKEEQMPAWPLEAVEIDAFLAKER 63 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 SS + ++++ ++W VRQ+ +A++P ++ PKR+ T+ ++ + Sbjct: 64 DLGKANSSISRLVSTLSRFYQWLVRQQLIALDPMSQIDAPKREKRMPLALTEAEVGKLLE 123 Query: 185 FWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPD 239 G + R E L +G+R S++ + + N+ K + + Sbjct: 124 QPDLTTDLGIRDRALLELLYATGMRVSEAVNLQLADVHANLQLIKVLGKGSKERLIPVSA 183 Query: 240 GFMKLLAMTPIGKETF-----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 + + ++ F+N+ ++ K +AG+ + + Sbjct: 184 LALDWIKRYLPVRDQQLLKRGKSSDYLFLNSRGGQLTRQAVWQKIKKYCQQAGIAKDVTP 243 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 H +R AT + GA + G + + YT Sbjct: 244 HTLRHSFATHLLEHGADLRVVQEILGHTDISTTQIYT 280 >gi|51892959|ref|YP_075650.1| recombinase [Symbiobacterium thermophilum IAM 14863] gi|51856648|dbj|BAD40806.1| recombinase [Symbiobacterium thermophilum IAM 14863] Length = 294 Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats. Identities = 47/275 (17%), Positives = 100/275 (36%), Gaps = 23/275 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHTP 130 LI E+ LA N+ S+ Q + G+ D ++ I + + + Sbjct: 4 LIHEFINYLSVERGLATNTLESYGRDLRQYYQYLGEDQVDLDAVSRSTIINYLMYLQKQG 63 Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 ++ + L +++ +++ VR++ + +P ++E PK + R T ++++ + Sbjct: 64 KATATIARRLAALKAFYQFLVREKRIKTDPTANLESPKLEKRLPRVLTVSEVERLLAQPD 123 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 G + R E L +G+R S+ ++ + I+ V L + Sbjct: 124 PSLPAGLRDRAMLELLYATGIRVSELVSLNIEDVNLETGYIRCTGKGSKERIVPLGSLAI 183 Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 K + F+N+ ++ F K A A ++K + H +R Sbjct: 184 KWVKEYLQQGRPKLVKDREEAALFVNHHGHRLTRQGFWKIVKKYAEDARIDKEITPHTLR 243 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 AT + GA + G + + YT Sbjct: 244 HSFATHLLENGADLRSVQEMLGHADISTTQIYTHV 278 >gi|229822894|ref|ZP_04448964.1| hypothetical protein GCWU000282_00184 [Catonella morbi ATCC 51271] gi|229787707|gb|EEP23821.1| hypothetical protein GCWU000282_00184 [Catonella morbi ATCC 51271] Length = 302 Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats. Identities = 44/281 (15%), Positives = 89/281 (31%), Gaps = 28/281 (9%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR---KH 128 Y + + N+ S+ + G I +R+ + + Sbjct: 12 FERYL--LLDMNRSANTIQSYGRDLAKFQAYLTEQGIDKVEAIDEVTVRAFLAKLSQDAY 69 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-- 186 SS + L+S++ F + ++ + NP V RPK+ + T +++ Sbjct: 70 AASSTSRMLSSLKQFFLFLRKEGILETNPMSLVHRPKQGRHLPKVLTASEIEALLQAPDT 129 Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMK 243 G + R FE + +GLR ++ + ++ L F K V L D ++ Sbjct: 130 SSPHGLRDRAIFELMYATGLRVTELVQLKLEDLHLELGFIQTLGKGDKERLVPLIDEAIE 189 Query: 244 LLAMTPIG-------------KETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHG 288 L + F+ + AG+ ++ H Sbjct: 190 WLEAYLEQVRPSFLRLAGSASPQEVFLTERGKAFTRQGIWKNLNKYVALAGIKQTVSPHM 249 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R AT + GA + G + + YT + + Sbjct: 250 LRHSFATHLLENGADLRMVQELLGHADISTTQIYTHISTQR 290 >gi|9622620|gb|AAF89876.1| putative site-specific recombinase XerD [Staphylococcus aureus] Length = 295 Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats. Identities = 44/277 (15%), Positives = 98/277 (35%), Gaps = 24/277 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHT 129 +I EY + L+ N+ ++ + + I + I+ + Sbjct: 4 IIEEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYMTEHHISHIDFIDRQLIQECLGHLIDQ 63 Query: 130 PSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 SA +F++++R ++A+R++Y A +P + ++ PK + +++ Sbjct: 64 GQSAKSIARFISTIRSFHQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLALLETP 123 Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 G + R E L +G+R S+ ++++ + ++ V L D Sbjct: 124 DLNKINGYRDRTMLELLYATGMRVSELIHLELENVNLIMGFVRVFGKGDKERIVPLGDAV 183 Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 ++ L F+N + ++ K KA + K + H + Sbjct: 184 IEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKANIKKKLTPHTL 243 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 R AT + GA + G + + YT + Sbjct: 244 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVS 280 >gi|319778432|ref|YP_004129345.1| Tyrosine recombinase XerD [Taylorella equigenitalis MCE9] gi|317108456|gb|ADU91202.1| Tyrosine recombinase XerD [Taylorella equigenitalis MCE9] Length = 297 Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats. Identities = 46/282 (16%), Positives = 91/282 (32%), Gaps = 23/282 (8%) Query: 72 KWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIRSGVESRKHT 129 K I + S L+ N+ S+ + + D KI + + + Sbjct: 6 KEWIDRFIDSLWLEEGLSKNTLNSYRLDLNSLNNFLKDSISILKIDSDQLNLWFMEISSS 65 Query: 130 --PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 ++ + L ++R + W ++Q + +PCL + K + ++ +++ + Sbjct: 66 SKATTINRKLATVRKFYAWCIKQNLILKDPCLGISTRKTPQRLPKSISESQVEELLNAPD 125 Query: 188 E----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGF 241 G + + E L +G+R S+ + + ++ K V + + Sbjct: 126 LKTASGLRDKAMLEILYATGMRVSELIAIKTNEISLDAGVVRVTMGKGSKDRLVPMGEES 185 Query: 242 MKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKAT--KAGVNKSAHGV 289 L F+N M F K A + S H + Sbjct: 186 EFYLKKYLSEGRPLLEKDKKNSFVFLNRFGDCMTRQAFWQIIKKYAKYTSIKIPLSPHVL 245 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 R AT + GA + G + + YT A R RL Sbjct: 246 RHAFATHLLNHGADLRVVQMLLGHVDISTTQIYTHVA-RERL 286 >gi|253732140|ref|ZP_04866305.1| site-specific recombinase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253724095|gb|EES92824.1| site-specific recombinase [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 295 Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats. Identities = 45/287 (15%), Positives = 100/287 (34%), Gaps = 25/287 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHT 129 +I EY + L+ N+ ++ + + I + I+ + Sbjct: 4 IIEEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYMTEHHISHIDFIDRQLIQECLGHLIDQ 63 Query: 130 PSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 SA +F++++R ++A+R++Y +P + ++ PK + +++ Sbjct: 64 GQSAKSIARFISTIRSFHQFAIREKYAVKDPTVLLDSPKYDKKLPDVLNVDEVLALLETP 123 Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 G + R E L +G+R S+ ++++ + ++ V L D Sbjct: 124 DLNKINGYRDRTMLELLYATGMRVSELIHLELENVNLIMGFVRVFGKGDKERIVPLGDAV 183 Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289 ++ L F+N + ++ K KA + K+ H + Sbjct: 184 IEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKANIKKTLTPHTL 243 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKN 335 R AT + GA + G + + YT + +IR Sbjct: 244 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQ 290 >gi|319892482|ref|YP_004149357.1| Tyrosine recombinase XerD [Staphylococcus pseudintermedius HKU10-03] gi|317162178|gb|ADV05721.1| Tyrosine recombinase XerD [Staphylococcus pseudintermedius HKU10-03] gi|323464415|gb|ADX76568.1| tyrosine recombinase XerD [Staphylococcus pseudintermedius ED99] Length = 295 Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats. Identities = 43/277 (15%), Positives = 94/277 (33%), Gaps = 24/277 (8%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKI---TTKHIRSGVESRK 127 + + EY + L+ N+ ++ + + + + + I+ Sbjct: 2 EEIRDEYLRFIQIEKGLSNNTIAAYRRDLNHYLNYLAEHKVANLNFVDRQMIQEWFGFLH 61 Query: 128 HTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 SA +F +++R ++A+R+ Y + +P + +E PK + + +++Q Sbjct: 62 DEGRSAKTIARFTSTIRSFHQFALRENYTSHDPTVLIETPKYDRKLPDVLSIAEVEQLLM 121 Query: 185 FWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD 239 E G + + E L +G+R S+ V+ + F K V L + Sbjct: 122 APDESKVNGYRDKTMLELLYATGIRVSELINIEVEDINLMMGFVKVFGKGSKERIVPLGE 181 Query: 240 GFMKLLAMTPIGKETFFINN----------DKQKMNATQFSIWFKAKATKAGV--NKSAH 287 + L + + + ++ K KAG+ + H Sbjct: 182 TVIDCLTHYIQNIRPQLLKHTVTHVLFLNLHGKPLSRQGVWKMIKQTGVKAGIMKRLTPH 241 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT + GA + G + + YT Sbjct: 242 TLRHSFATHLLENGADLRAVQDMLGHSDISTTQLYTH 278 >gi|224476610|ref|YP_002634216.1| putative site-specific recombinase XerD [Staphylococcus carnosus subsp. carnosus TM300] gi|222421217|emb|CAL28031.1| putative site-specific recombinase XerD [Staphylococcus carnosus subsp. carnosus TM300] Length = 299 Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats. Identities = 48/286 (16%), Positives = 98/286 (34%), Gaps = 25/286 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHT 129 +I EY K L+ N+ ++ ++ I + I+ + Sbjct: 8 VIEEYLKFIQIEKGLSANTIGAYRRDLNKYKEYLVLKKINNIDFIDREIIQQCLGYLHDD 67 Query: 130 PSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 SA +F++++R ++A+R+ Y A +P + +E PK + ED+ Sbjct: 68 GHSAKSIARFISTVRSFHQFALRERYAAKDPTVLIETPKYERRLPDVLDVEDVLALLETP 127 Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 G + R E L +G+R ++ V+ + + ++ + L + Sbjct: 128 DLSKNNGYRDRTILELLYATGMRVTELIHVRVEDVNLIMGFVRVFGKGSKERIIPLGETV 187 Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 + L F+N + ++ K KA + K + H + Sbjct: 188 IDYLKKYIETVRPQLLKQTVTDVLFLNLHGKPLSRQGIWKLIKQYGVKANIKKKLTPHSL 247 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIK 334 R AT + GA + G + + YT + +IR Sbjct: 248 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYN 293 >gi|315653500|ref|ZP_07906421.1| integrase/recombinase XerD [Lactobacillus iners ATCC 55195] gi|315489191|gb|EFU78832.1| integrase/recombinase XerD [Lactobacillus iners ATCC 55195] Length = 297 Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats. Identities = 45/274 (16%), Positives = 94/274 (34%), Gaps = 25/274 (9%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESRKHTP- 130 + +Y + A L+ N+ +S+ + ++ I S + + Sbjct: 6 LEDYLRFAQIERGLSNNTLLSYRQDLLEYFSFLKSLGITTWEVDALIIDSFLAQERDKGK 65 Query: 131 --SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKS 184 +S + L+S+R ++W RQ + +P L ++ PK++ + + + + Sbjct: 66 AIASISRMLSSLRKFYQWLFRQNLIKQDPLLRIDSPKKEKRLPTALSTTEVTKLINMPDT 125 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-------------SIKTQKTGT 231 G + R E L +G+R S+ + + + + Sbjct: 126 TTDLGIRDRAILETLYATGMRVSEVINLNEDSIHEELHLIKVFGKGSKQRLIPISNVAMS 185 Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 I K L + ++ F+N+ K+ K AG+NK + H + Sbjct: 186 WIKKYQITVRNKTLLESGKFEKAIFLNSRGGKITRQAVWQMIKRYCQLAGINKNVTPHTL 245 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323 R AT + GA + G + + YT Sbjct: 246 RHTFATHLLENGADLRIVQEILGHSDISTTQIYT 279 >gi|154249762|ref|YP_001410587.1| integrase family protein [Fervidobacterium nodosum Rt17-B1] gi|154153698|gb|ABS60930.1| integrase family protein [Fervidobacterium nodosum Rt17-B1] Length = 290 Score = 147 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 43/286 (15%), Positives = 96/286 (33%), Gaps = 20/286 (6%) Query: 71 LKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH- 128 ++ L+ Y H + N+ ++ + + I + V++ Sbjct: 6 IEALLRTYEDYLVHVRRSSENTVKAYIKDIRRFFEYI-QKPPKDIVRSDVEKFVKALSKG 64 Query: 129 -------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 T ++ ++++S++ +F + V NP V P+ + + T ++++ Sbjct: 65 EITGGEVTETTISRYISSLKTIFDYLQLIGVVNENPTERVRHPRLRKKIPSFLTMKEVKA 124 Query: 182 FKSFWSEG--SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVEL 237 + + E + + L + GLR S+ C V+ + I K V + Sbjct: 125 MINTFDEEKELKYKTIISVLYFCGLRVSELCNLRVEDVSFYPPYIKVVMGKGNKDRLVPI 184 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMN--ATQFSIWFKAKATKAGVNK--SAHGVRKFS 293 D + LL + + + + K A +AG+NK H +R Sbjct: 185 SDSIIPLLEKYVERYKPKVYFIESRGKSIHPATVFRIVKRAAQRAGINKKIHPHTLRHSF 244 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 AT + G + Y AD+ + +++ Sbjct: 245 ATHLIMNNVNVKIVQELLGHANLSTTSIYLHVADKEK--FDAVKKL 288 >gi|322515725|ref|ZP_08068691.1| tyrosine recombinase XerD [Actinobacillus ureae ATCC 25976] gi|322118197|gb|EFX90503.1| tyrosine recombinase XerD [Actinobacillus ureae ATCC 25976] Length = 297 Score = 147 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 42/285 (14%), Positives = 98/285 (34%), Gaps = 24/285 (8%) Query: 70 TLKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVE 124 +L +I ++ + L+ N+ S+ ++ + Sbjct: 3 SLDPIIEQFLDTLWQEHGLSENTSASYRLDLERFSEWLPTPKAFLTLDHFDLQSFLGERL 62 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + + +S+ + L+ +R F++ + Y +P L++ P++ T + ++E + Sbjct: 63 EQGYKATSSARMLSCLRKFFRFLYIENYRQDDPTLTLISPRKPTNLPKSLSEEQVMDLLD 122 Query: 185 FWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-----------TQKT 229 + + + E L +GLR ++ +L ++ Sbjct: 123 CPNTLDPVELRDKAMLELLYATGLRVTELVSLTTDNLNLRQGVMRIVGKGNKERLVPIGE 182 Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSA 286 ++ + + + + I + F + +M F K A AG++ S Sbjct: 183 EASYWIQEFFQYGRAILLNNIQSDVVFPSRRGLQMTRQTFWHRIKHYAVLAGIDSEKLSP 242 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 H +R AT + GA + G + + YT A + RL Sbjct: 243 HVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVA-KARL 286 >gi|302191354|ref|ZP_07267608.1| tyrosine recombinase XerD [Lactobacillus iners AB-1] gi|312871387|ref|ZP_07731482.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 3008A-a] gi|311093040|gb|EFQ51389.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 3008A-a] Length = 296 Score = 147 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 45/274 (16%), Positives = 93/274 (33%), Gaps = 25/274 (9%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESRKHTP- 130 + +Y + A L+ N+ +S+ + ++ I S + Sbjct: 5 LEDYLRFAQIERGLSNNTLLSYRQDLLEYFSFLKSLGITTWEVDALIIDSFFAQERDKGK 64 Query: 131 --SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKS 184 +S + L+S+R ++W RQ + +P L ++ PK++ + + + + Sbjct: 65 AIASISRMLSSLRKFYQWLFRQNLIKQDPLLRIDSPKKEKRLPTAMSTTEVTKLINMPDT 124 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-------------SIKTQKTGT 231 G + R E L +G+R S+ + + + + Sbjct: 125 TTDLGIRDRAILETLYATGMRVSEVINLNEDSIHEELHLIKVFGKGSKQRLIPISNVAMS 184 Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 I K L + ++ F+N+ K+ K AG+NK + H + Sbjct: 185 WIKKYQITVRNKTLLESGKFEKAIFLNSRGGKITRQAVWQMIKRYCQLAGINKNVTPHTL 244 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323 R AT + GA + G + + YT Sbjct: 245 RHTFATHLLENGADLRIVQEILGHSDISTTQIYT 278 >gi|295428073|ref|ZP_06820705.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus EMRSA16] gi|295128431|gb|EFG58065.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus EMRSA16] Length = 297 Score = 147 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 46/287 (16%), Positives = 101/287 (35%), Gaps = 25/287 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHT 129 +I EY + L+ N+ ++ + + I + I+ + Sbjct: 6 IIEEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYMTEHHISHIDFIDRQLIQECLGHLIDQ 65 Query: 130 PSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 SA +F++++R ++A+R++Y A +P + ++ PK + +++ Sbjct: 66 GQSAKSIARFISTIRSFHQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLALLETP 125 Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 G + R E L +G+R S+ ++++ + ++ V L D Sbjct: 126 DLNKINGYRDRTMLELLYATGMRVSELIHLELENVNLIMGFVRVFGKGDKERIVPLGDAV 185 Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289 ++ L F+N + ++ K KA + K+ H + Sbjct: 186 IEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKANIKKTLTPHTL 245 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKN 335 R AT + GA + G + + YT + +IR Sbjct: 246 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQ 292 >gi|83590344|ref|YP_430353.1| tyrosine recombinase XerD subunit [Moorella thermoacetica ATCC 39073] gi|83573258|gb|ABC19810.1| tyrosine recombinase XerD subunit [Moorella thermoacetica ATCC 39073] Length = 295 Score = 147 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 44/281 (15%), Positives = 98/281 (34%), Gaps = 24/281 (8%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKH 128 L+ ++ LA N+ S+ S Q + G R +T + + + + Sbjct: 3 ELVDQFLYYLVVERGLAENTLASYNSDLQQFLLYLEGAGVKSPRDVTRGLLVAYLVKMQQ 62 Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQ 181 +P++ Q L +++ + + +R+ V +P +E P++ + + T ++ Q Sbjct: 63 DGRSPATISQHLAALKSFYHFLLRERLVESDPTADLESPRQSKKLPQVLTVAEVEKLLNQ 122 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240 ++ G + + E L +GLR S+ V + ++ K V + Sbjct: 123 PRTDTPAGLRDKAMLELLYATGLRVSELVSLNVDQVNLEGEFVRCLGKGSKERVVPMGQV 182 Query: 241 FMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288 + F+N+ ++++ K A + K + H Sbjct: 183 ACFYVRTYIENGRGKLIKRATEPALFVNHHGRRLSRQGCWKILKGYVRAANLKKDITPHT 242 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R AT + GA + G + + YT + Sbjct: 243 LRHSFATHLLENGADLRSVQELLGHADIGTTQIYTHLTRKK 283 >gi|118586872|ref|ZP_01544306.1| integrase/recombinase [Oenococcus oeni ATCC BAA-1163] gi|118432704|gb|EAV39436.1| integrase/recombinase [Oenococcus oeni ATCC BAA-1163] Length = 302 Score = 147 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 45/274 (16%), Positives = 97/274 (35%), Gaps = 24/274 (8%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKHTPSSAI 134 Y ++ L NS S++ + + K+ I + +++ S Sbjct: 17 RYLRTE--RGLLENSIKSYKQDLSEFGAYIQKENILLVKVDRFTILDWLNYLQNSGKSNN 74 Query: 135 ---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE--- 188 ++S+R F + + + I+P L V PK+ + + T +++ + Sbjct: 75 SIVHMVSSLRKFFAYLSDDQQIQIDPMLKVTTPKKNSHLPQVLTATEIEAVLAVPDISTT 134 Query: 189 -GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-----------NIFSIKTQKTGTIITVE 236 G + R E + +G R S+ C + L + I +++ + Sbjct: 135 LGLRNRALLETMYATGFRVSEICNLKLADLHDELGLITTIGKGQKQRIVPIGEMSLLYIS 194 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294 + + + F+N+ +++ K A KAG++K S H +R A Sbjct: 195 KYFKESRPILLKDKESPYLFLNDHGHRISRQGIFKLVKEIAIKAGIDKDISPHTLRHSFA 254 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADR 328 T + GA + G + + YT + + Sbjct: 255 TNLLENGADLRIVQELLGHSDISTTQIYTHVSQK 288 >gi|82701881|ref|YP_411447.1| tyrosine recombinase XerD [Nitrosospira multiformis ATCC 25196] gi|82409946|gb|ABB74055.1| Tyrosine recombinase XerD [Nitrosospira multiformis ATCC 25196] Length = 303 Score = 147 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 52/296 (17%), Positives = 100/296 (33%), Gaps = 31/296 (10%) Query: 62 NSPRKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-----IT 115 + P L + + L+ N+ S+ S +Q +T Sbjct: 2 RVSERNPELLDEFCDALWLED----GLSRNTMESYRSDLEQFGDWFARQKPDDSSFLTVT 57 Query: 116 TKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 + + R S+ + L+S++ +++ +RQ + +P L+++ P+ Sbjct: 58 HSDLLGFMTGRFSAGMKASTTSRELSSLKRFYRFLLRQGKINADPTLNIDTPRLPRNLPV 117 Query: 173 PWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228 T+ D++ + G + R E L SGLR S+ + ++ ++ Sbjct: 118 SLTEADVEALLGAPDVTFPLGLRDRAMLEVLYASGLRVSELVSLESGQISLDMGVVRIMG 177 Query: 229 TG-TIITVELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKA 277 G L + ++ + F+ M F K A Sbjct: 178 KGGKERLTPLGEEALEWMVRYIKEIRPGLLDGKSSNALFVTYRGAGMTRQAFWYLIKRYA 237 Query: 278 TKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +AG+ S HG+R AT + GA + G + + YT A R RL Sbjct: 238 RQAGITKPLSPHGLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVA-RERL 292 >gi|81428639|ref|YP_395639.1| site-specific DNA tyrosine recombinase, XerD [Lactobacillus sakei subsp. sakei 23K] gi|78610281|emb|CAI55330.1| Site-specific DNA tyrosine recombinase, XerD [Lactobacillus sakei subsp. sakei 23K] Length = 294 Score = 147 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 43/280 (15%), Positives = 90/280 (32%), Gaps = 23/280 (8%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR-----SGVES 125 LI +Y L+ N+R S+ Q + T + Sbjct: 2 DDLIQDYLHYLKIERGLSENTRQSYRQDLKQYQQFLVSQKLTSFTEDRFIVLGFLQAQTT 61 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + SS + ++++R +++ R+ + +P L ++ PK+ + E++++ Sbjct: 62 AQKAQSSITRSISTLRKFYQYLAREGRIQKDPMLQIDSPKQGRHLPAVLSSEEIERLLKT 121 Query: 186 W----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDG 240 G + R E L +GLR S+ + L ++ K + + D Sbjct: 122 PDTSTPLGLRDRAILEVLYATGLRVSELVHLKLTDLHLSLGLIQTLGKGDKERIIPIGDV 181 Query: 241 FMKLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAGVNK--SAHG 288 + + KA AG++K + H Sbjct: 182 AVDWINQYLERSRNRLTKGKDSPYLFVNFHGNGLTRQGIWKNLKAIVQAAGIDKDVTPHT 241 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 +R AT+ + GA + G + + YT + + Sbjct: 242 LRHSFATVLLENGADLRIVQELLGHSDISTTQIYTHISKK 281 >gi|15924487|ref|NP_372021.1| site-specific recombinase [Staphylococcus aureus subsp. aureus Mu50] gi|15927078|ref|NP_374611.1| site-specific recombinase [Staphylococcus aureus subsp. aureus N315] gi|21283180|ref|NP_646268.1| site-specific recombinase [Staphylococcus aureus subsp. aureus MW2] gi|49483747|ref|YP_040971.1| integrase/recombinase [Staphylococcus aureus subsp. aureus MRSA252] gi|49486335|ref|YP_043556.1| integrase/recombinase [Staphylococcus aureus subsp. aureus MSSA476] gi|57650453|ref|YP_186382.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus COL] gi|87160007|ref|YP_494143.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195302|ref|YP_500106.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148267981|ref|YP_001246924.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus JH9] gi|150394046|ref|YP_001316721.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus JH1] gi|151221617|ref|YP_001332439.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus str. Newman] gi|156979816|ref|YP_001442075.1| site-specific recombinase [Staphylococcus aureus subsp. aureus Mu3] gi|161509725|ref|YP_001575384.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221140082|ref|ZP_03564575.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253314865|ref|ZP_04838078.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253733255|ref|ZP_04867420.1| site-specific recombinase [Staphylococcus aureus subsp. aureus TCH130] gi|255006283|ref|ZP_05144884.2| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257425620|ref|ZP_05602044.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus 55/2053] gi|257428281|ref|ZP_05604679.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus 65-1322] gi|257430918|ref|ZP_05607298.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus 68-397] gi|257433607|ref|ZP_05609965.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus E1410] gi|257436520|ref|ZP_05612564.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus M876] gi|257793574|ref|ZP_05642553.1| tyrosine recombinase XerD [Staphylococcus aureus A9781] gi|258411126|ref|ZP_05681406.1| tyrosine recombinase xerD [Staphylococcus aureus A9763] gi|258419910|ref|ZP_05682871.1| tyrosine recombinase XerD [Staphylococcus aureus A9719] gi|258423151|ref|ZP_05686044.1| tyrosine recombinase XerD [Staphylococcus aureus A9635] gi|258437328|ref|ZP_05689312.1| tyrosine recombinase xerD [Staphylococcus aureus A9299] gi|258443533|ref|ZP_05691872.1| tyrosine recombinase xerD [Staphylococcus aureus A8115] gi|258446740|ref|ZP_05694894.1| tyrosine recombinase xerD [Staphylococcus aureus A6300] gi|258448655|ref|ZP_05696767.1| tyrosine recombinase xerD [Staphylococcus aureus A6224] gi|258451155|ref|ZP_05699190.1| tyrosine recombinase xerD [Staphylococcus aureus A5948] gi|258454271|ref|ZP_05702241.1| tyrosine recombinase xerD [Staphylococcus aureus A5937] gi|262049084|ref|ZP_06021961.1| site-specific recombinase [Staphylococcus aureus D30] gi|262051169|ref|ZP_06023393.1| site-specific recombinase [Staphylococcus aureus 930918-3] gi|269203124|ref|YP_003282393.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus ED98] gi|282892996|ref|ZP_06301230.1| tyrosine recombinase XerD [Staphylococcus aureus A8117] gi|282904077|ref|ZP_06311965.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus C160] gi|282905904|ref|ZP_06313759.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus Btn1260] gi|282908814|ref|ZP_06316632.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911133|ref|ZP_06318935.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus WBG10049] gi|282914302|ref|ZP_06322088.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus M899] gi|282919271|ref|ZP_06327006.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus C427] gi|282924596|ref|ZP_06332264.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus C101] gi|282924746|ref|ZP_06332413.1| tyrosine recombinase XerD [Staphylococcus aureus A9765] gi|282928967|ref|ZP_06336554.1| tyrosine recombinase XerD [Staphylococcus aureus A10102] gi|283958259|ref|ZP_06375710.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus A017934/97] gi|284024557|ref|ZP_06378955.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus 132] gi|293503379|ref|ZP_06667226.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus 58-424] gi|293510394|ref|ZP_06669100.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus M809] gi|293530933|ref|ZP_06671615.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus M1015] gi|294848527|ref|ZP_06789273.1| tyrosine recombinase XerD [Staphylococcus aureus A9754] gi|295406617|ref|ZP_06816422.1| tyrosine recombinase XerD [Staphylococcus aureus A8819] gi|296276353|ref|ZP_06858860.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus MR1] gi|297207783|ref|ZP_06924218.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297245799|ref|ZP_06929664.1| tyrosine recombinase XerD [Staphylococcus aureus A8796] gi|297590959|ref|ZP_06949597.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus MN8] gi|300911864|ref|ZP_07129307.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus TCH70] gi|304380916|ref|ZP_07363576.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|60416269|sp|P0A0N9|XERD_STAAM RecName: Full=Tyrosine recombinase xerD gi|60416270|sp|P0A0P0|XERD_STAAN RecName: Full=Tyrosine recombinase xerD gi|60416271|sp|P0A0P1|XERD_STAAW RecName: Full=Tyrosine recombinase xerD gi|60416272|sp|P0A0P2|XERD_STAAU RecName: Full=Tyrosine recombinase xerD gi|81649271|sp|Q6G967|XERD_STAAS RecName: Full=Tyrosine recombinase xerD gi|81651036|sp|Q6GGK1|XERD_STAAR RecName: Full=Tyrosine recombinase xerD gi|81694449|sp|Q5HFS5|XERD_STAAC RecName: Full=Tyrosine recombinase xerD gi|3747042|gb|AAC64162.1| tyrosine recombinase XerD [Staphylococcus aureus] gi|13701296|dbj|BAB42590.1| site-specific recombinase [Staphylococcus aureus subsp. aureus N315] gi|14247268|dbj|BAB57659.1| site-specific recombinase [Staphylococcus aureus subsp. aureus Mu50] gi|21204620|dbj|BAB95316.1| site-specific recombinase [Staphylococcus aureus subsp. aureus MW2] gi|49241876|emb|CAG40569.1| integrase/recombinase [Staphylococcus aureus subsp. aureus MRSA252] gi|49244778|emb|CAG43214.1| integrase/recombinase [Staphylococcus aureus subsp. aureus MSSA476] gi|57284639|gb|AAW36733.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus COL] gi|87125981|gb|ABD20495.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202860|gb|ABD30670.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147741050|gb|ABQ49348.1| tyrosine recombinase XerD subunit [Staphylococcus aureus subsp. aureus JH9] gi|149946498|gb|ABR52434.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus JH1] gi|150374417|dbj|BAF67677.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus str. Newman] gi|156721951|dbj|BAF78368.1| site-specific recombinase [Staphylococcus aureus subsp. aureus Mu3] gi|160368534|gb|ABX29505.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253728795|gb|EES97524.1| site-specific recombinase [Staphylococcus aureus subsp. aureus TCH130] gi|257271314|gb|EEV03460.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus 55/2053] gi|257275122|gb|EEV06609.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus 65-1322] gi|257278348|gb|EEV08984.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus 68-397] gi|257281700|gb|EEV11837.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus E1410] gi|257283871|gb|EEV13994.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus M876] gi|257787546|gb|EEV25886.1| tyrosine recombinase XerD [Staphylococcus aureus A9781] gi|257840276|gb|EEV64740.1| tyrosine recombinase xerD [Staphylococcus aureus A9763] gi|257844095|gb|EEV68483.1| tyrosine recombinase XerD [Staphylococcus aureus A9719] gi|257846601|gb|EEV70622.1| tyrosine recombinase XerD [Staphylococcus aureus A9635] gi|257848533|gb|EEV72521.1| tyrosine recombinase xerD [Staphylococcus aureus A9299] gi|257850939|gb|EEV74882.1| tyrosine recombinase xerD [Staphylococcus aureus A8115] gi|257854315|gb|EEV77264.1| tyrosine recombinase xerD [Staphylococcus aureus A6300] gi|257857933|gb|EEV80822.1| tyrosine recombinase xerD [Staphylococcus aureus A6224] gi|257861210|gb|EEV84023.1| tyrosine recombinase xerD [Staphylococcus aureus A5948] gi|257863550|gb|EEV86308.1| tyrosine recombinase xerD [Staphylococcus aureus A5937] gi|259160806|gb|EEW45826.1| site-specific recombinase [Staphylococcus aureus 930918-3] gi|259162753|gb|EEW47318.1| site-specific recombinase [Staphylococcus aureus D30] gi|262075414|gb|ACY11387.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus ED98] gi|269940989|emb|CBI49373.1| integrase/recombinase [Staphylococcus aureus subsp. aureus TW20] gi|282313431|gb|EFB43826.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus C101] gi|282317081|gb|EFB47455.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus C427] gi|282321483|gb|EFB51808.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus M899] gi|282324828|gb|EFB55138.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus WBG10049] gi|282327078|gb|EFB57373.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331196|gb|EFB60710.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus Btn1260] gi|282589374|gb|EFB94465.1| tyrosine recombinase XerD [Staphylococcus aureus A10102] gi|282592753|gb|EFB97759.1| tyrosine recombinase XerD [Staphylococcus aureus A9765] gi|282595695|gb|EFC00659.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus C160] gi|282764314|gb|EFC04440.1| tyrosine recombinase XerD [Staphylococcus aureus A8117] gi|283470776|emb|CAQ49987.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus ST398] gi|283790408|gb|EFC29225.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus A017934/97] gi|285817178|gb|ADC37665.1| Site-specific recombinase XerD [Staphylococcus aureus 04-02981] gi|290920201|gb|EFD97267.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus M1015] gi|291095045|gb|EFE25310.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus 58-424] gi|291466758|gb|EFF09278.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus M809] gi|294824553|gb|EFG40976.1| tyrosine recombinase XerD [Staphylococcus aureus A9754] gi|294968364|gb|EFG44388.1| tyrosine recombinase XerD [Staphylococcus aureus A8819] gi|296887800|gb|EFH26698.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297177450|gb|EFH36702.1| tyrosine recombinase XerD [Staphylococcus aureus A8796] gi|297575845|gb|EFH94561.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus MN8] gi|298694781|gb|ADI98003.1| site-specific recombinase [Staphylococcus aureus subsp. aureus ED133] gi|300886110|gb|EFK81312.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus TCH70] gi|302751329|gb|ADL65506.1| site-specific recombinase XerD [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340643|gb|EFM06577.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312438035|gb|ADQ77106.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus TCH60] gi|312829886|emb|CBX34728.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129770|gb|EFT85760.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus CGS03] gi|315195394|gb|EFU25781.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus CGS00] gi|315198812|gb|EFU29140.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus CGS01] gi|320140619|gb|EFW32473.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus MRSA131] gi|320144155|gb|EFW35924.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus MRSA177] gi|329314175|gb|AEB88588.1| Tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus T0131] gi|329725291|gb|EGG61778.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus 21189] gi|329727344|gb|EGG63800.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus 21172] Length = 295 Score = 147 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 46/287 (16%), Positives = 101/287 (35%), Gaps = 25/287 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHT 129 +I EY + L+ N+ ++ + + I + I+ + Sbjct: 4 IIEEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYMTEHHISHIDFIDRQLIQECLGHLIDQ 63 Query: 130 PSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 SA +F++++R ++A+R++Y A +P + ++ PK + +++ Sbjct: 64 GQSAKSIARFISTIRSFHQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLALLETP 123 Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 G + R E L +G+R S+ ++++ + ++ V L D Sbjct: 124 DLNKINGYRDRTMLELLYATGMRVSELIHLELENVNLIMGFVRVFGKGDKERIVPLGDAV 183 Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289 ++ L F+N + ++ K KA + K+ H + Sbjct: 184 IEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKANIKKTLTPHTL 243 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKN 335 R AT + GA + G + + YT + +IR Sbjct: 244 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQ 290 >gi|322381748|ref|ZP_08055702.1| site-specific tyrosine recombinase XerD-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154136|gb|EFX46458.1| site-specific tyrosine recombinase XerD-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 298 Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats. Identities = 54/277 (19%), Positives = 106/277 (38%), Gaps = 27/277 (9%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVE--- 124 L I Y + LA N+ S++ Q G + + H+ + + Sbjct: 5 LDEFI-IYLQDE--RRLAPNTVESYKKDLAQYADFLSSEGILAWEETQRVHVITYMNNLK 61 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 P++ + L S+R L+ + +R++ + ++P VE PK +T+ T E+M Sbjct: 62 QLGRAPATISRTLVSIRALYHYLIREQVMTLDPSGQVESPKAETKIPVILTVEEMDNLLG 121 Query: 185 FWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELP- 238 + G+ + + E L +G+R S+ + ++ ++ TG V + Sbjct: 122 VPNTGTSSGLRDKAMLELLYATGIRVSELITLNKGDIYADLGYVRCTGTGGKERIVPMGK 181 Query: 239 ----------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286 + + L + F+N+ +M F K AT+AG++K + Sbjct: 182 VATLWIQRYLNEAREALLKEGKPDKALFLNHIGTRMTRQGFWKMMKKYATEAGIHKEITP 241 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 H +R AT + GA + G + + YT Sbjct: 242 HTLRHSFATHLLENGADLRAVQELLGHSDLSTTQRYT 278 >gi|222148446|ref|YP_002549403.1| phage-related integrase [Agrobacterium vitis S4] gi|221735434|gb|ACM36397.1| phage-related integrase [Agrobacterium vitis S4] Length = 343 Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats. Identities = 73/337 (21%), Positives = 140/337 (41%), Gaps = 16/337 (4%) Query: 18 HGKIIYYFRKGHGRRIRLP---YPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 G + Y R + R+ P + F Y A G P S KP ++ WL Sbjct: 3 SGNVRYRVRVIGNPKQRIRIFCLPGDEDFSRQYTLARYGEQPVPLKKASEVVKPRSIGWL 62 Query: 75 ISEYRKSAHWGSL----AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 + Y + + + + ++I I + + TP Sbjct: 63 VHSYFEYMEQRVKARLSSAKTLKKKRNLLARLIED--PDRIMIIPQPKLIEMQDKMASTP 120 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 + A F+ S+ V+++WA+++ ++ NP ++R +K +G PW D+++F ++ GS Sbjct: 121 AQADAFIESISVMYEWAIKRGHLKTNPAKGIDRIYKKGDGATPWKSADVKRFFAYHKPGS 180 Query: 191 QPRLAFEFLLYSGLRCSD--SCRAGVQHLQNNIFSIKTQKTGT---IITVELPDGFMKLL 245 +P +A LL++G R D + + + + +++ +T+ L + Sbjct: 181 KPFIAMSILLWTGCRIEDLTFLGPRHECILDGLEALRWVPAKKGSSEVTIPLLKPLKAAI 240 Query: 246 AMTPIGKETFFINNDKQKM-NATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGAT 303 + ET+ + + + S FK AG+ + SAHGVRK A + A+ G + Sbjct: 241 HSQAVIAETYIVARGNKPFASGDSMSAMFKRWCIDAGLNHLSAHGVRKGLAELLAEQGCS 300 Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 +E+MA G +E YT+ +R +L + R+ Sbjct: 301 QYEIMAILGHSEAKTSEVYTRRVERWKLAQQAMDRLD 337 >gi|116491033|ref|YP_810577.1| tyrosine recombinase XerD subunit [Oenococcus oeni PSU-1] gi|290890513|ref|ZP_06553588.1| hypothetical protein AWRIB429_0978 [Oenococcus oeni AWRIB429] gi|116091758|gb|ABJ56912.1| tyrosine recombinase XerD subunit [Oenococcus oeni PSU-1] gi|290479909|gb|EFD88558.1| hypothetical protein AWRIB429_0978 [Oenococcus oeni AWRIB429] Length = 302 Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats. Identities = 45/274 (16%), Positives = 97/274 (35%), Gaps = 24/274 (8%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKHTPSSAI 134 Y ++ L NS S++ + + K+ I + +++ S Sbjct: 17 RYLRTEQ--GLLENSIKSYKQDLSEFGAYIQKENILLVKVDRFTILDWLNYLQNSGKSNN 74 Query: 135 ---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE--- 188 ++S+R F + + + I+P L V PK+ + + T +++ + Sbjct: 75 SIVHMVSSLRKFFAYLSDDQQIQIDPMLKVTTPKKNSHLPQVLTATEIEAVLAVPDISTT 134 Query: 189 -GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-----------NIFSIKTQKTGTIITVE 236 G + R E + +G R S+ C + L + I +++ + Sbjct: 135 LGLRNRALLETMYATGFRVSEICNLKLADLHDELGLITTIGKGQKQRIVPIGEMSLLYIS 194 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294 + + + F+N+ +++ K A KAG++K S H +R A Sbjct: 195 KYFKESRPILLKDKESPYLFLNDHGHRISRQGIFKLVKEIAIKAGIDKDISPHTLRHSFA 254 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADR 328 T + GA + G + + YT + + Sbjct: 255 TNLLENGADLRIVQELLGHSDISTTQIYTHVSQK 288 >gi|259500665|ref|ZP_05743567.1| integrase/recombinase XerD [Lactobacillus iners DSM 13335] gi|259168049|gb|EEW52544.1| integrase/recombinase XerD [Lactobacillus iners DSM 13335] Length = 297 Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats. Identities = 45/274 (16%), Positives = 93/274 (33%), Gaps = 25/274 (9%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESRKHTP- 130 + +Y + A L+ N+ +S+ + ++ I S + Sbjct: 6 LEDYLRFAQIERGLSNNTLLSYRQDLLEYFSFLKSLGITTWEVDALIIDSFFAQERDKGK 65 Query: 131 --SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKS 184 +S + L+S+R ++W RQ + +P L ++ PK++ + + + + Sbjct: 66 AIASISRMLSSLRKFYQWLFRQNLIKQDPLLRIDSPKKEKRLPTAMSTTEVTKLINMPDT 125 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-------------SIKTQKTGT 231 G + R E L +G+R S+ + + + + Sbjct: 126 TTDLGIRDRAILETLYATGMRVSEVINLNEDSIHEELHLIKVFGKGSKQRLIPISNVAMS 185 Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 I K L + ++ F+N+ K+ K AG+NK + H + Sbjct: 186 WIKKYQITVRNKTLLESGKFEKAIFLNSRGGKITRQAVWQMIKRYCQLAGINKNVTPHTL 245 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323 R AT + GA + G + + YT Sbjct: 246 RHTFATHLLENGADLRIVQEILGHSDISTTQIYT 279 >gi|259046879|ref|ZP_05737280.1| integrase/recombinase XerD [Granulicatella adiacens ATCC 49175] gi|259036502|gb|EEW37757.1| integrase/recombinase XerD [Granulicatella adiacens ATCC 49175] Length = 294 Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats. Identities = 38/279 (13%), Positives = 91/279 (32%), Gaps = 24/279 (8%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI------TTKHIRSGVESRKH 128 I + S L+ N+ S+ ++ + + ++ T ++ ++ Sbjct: 4 IHYFLDSIAVQGLSDNTVSSYRRDLEKFSQFLEEQKVIRLQNVDHTTMVLFLQKLKKDEY 63 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187 SS + ++ ++ F++ +++ + +P + PK K + + + +++ + Sbjct: 64 AVSSTSRMISCLKKFFQFLIQERIIDKDPTQQIHPPKPKKQLPKALSIDEVNRLLEVPDT 123 Query: 188 ---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMK 243 G + + E L +G+R S+ + L + K + + Sbjct: 124 TTVLGLRDKAMLELLYATGMRVSELISIELGDLHLELGFLQTIGKGNKQRIIPIGQEATN 183 Query: 244 LLAMTPIGKETF-----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 + F+N+ F K A + K S H +R Sbjct: 184 WIQNYLEYARPALEDEKKLSNVLFLNHRGGPFTRQGFWKNLKKIVQTAMITKEVSPHTLR 243 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT +AGA + G + + YT + Sbjct: 244 HSFATHILEAGADLRIVQELLGHSDISTTQIYTHITNER 282 >gi|82751090|ref|YP_416831.1| site-specific recombinase [Staphylococcus aureus RF122] gi|82656621|emb|CAI81047.1| site-specific recombinase [Staphylococcus aureus RF122] Length = 295 Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats. Identities = 46/287 (16%), Positives = 101/287 (35%), Gaps = 25/287 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHT 129 +I EY + L+ N+ ++ + + I + I+ + Sbjct: 4 IIEEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYMTEHHISHIDFIDRQLIQECLGHLIDQ 63 Query: 130 PSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-- 184 SA +F++++R ++A+R++Y A +P + ++ PK + +++ Sbjct: 64 GQSAKSIARFISTIRSFHQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLALLETL 123 Query: 185 --FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 G + R E L +G+R S+ ++++ + ++ V L D Sbjct: 124 DLNKINGYRDRTMLELLYATGMRVSELIHLELENVNLIMGFVRVFGKGDKERIVPLGDAV 183 Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289 ++ L F+N + ++ K KA + K+ H + Sbjct: 184 IEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKANIKKTLTPHTL 243 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKN 335 R AT + GA + G + + YT + +IR Sbjct: 244 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQ 290 >gi|148651956|ref|YP_001279049.1| tyrosine recombinase XerD [Psychrobacter sp. PRwf-1] gi|148571040|gb|ABQ93099.1| tyrosine recombinase XerD [Psychrobacter sp. PRwf-1] Length = 312 Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats. Identities = 54/320 (16%), Positives = 107/320 (33%), Gaps = 37/320 (11%) Query: 52 TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY 111 P++ + +P I+E+R++ L+ +R ++ + + Sbjct: 5 RAIQPRQPKALAVDDEP----AYITEFRQAMLARGLSTRTRNAYVRDLK-LCETTHSKAL 59 Query: 112 ---RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168 + + ++ + TP + + L+S+R + W V E NPC ++ PK Sbjct: 60 TLWSDMDVMQCLTALDRQGKTPRTQARMLSSLRQFYLWMVGNERREDNPCERIKTPKIGR 119 Query: 169 EGIRPWTKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS- 223 + ++ D++ S G + + E L GLR S+ ++ + N Sbjct: 120 SLPKDLSENDVESLLSAPDTSTALGLRDKAMLEVLYACGLRVSELMNLSLEQVNLNAGWL 179 Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIG-------------KETFFINNDKQKMNATQFS 270 T K V L + L + F+ M F Sbjct: 180 QITGKGNKTRLVPLGEYASDALDDYLTHARGELVAHLKSGNCQAVFLTTQGGYMTRQNFW 239 Query: 271 IWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 K A +AG+ + S H +R AT + GA + G + + YT Sbjct: 240 YMIKKYAKQAGIQSDLSPHTLRHAFATHLLNHGADLRSVQLLLGHSDLSTTQIYTHV--- 296 Query: 329 IRLGIKNSRRISSVVDSDDP 348 + R+ + ++ P Sbjct: 297 ------ATARLQQLHEAHHP 310 >gi|315282996|ref|ZP_07871279.1| tyrosine recombinase XerD [Listeria marthii FSL S4-120] gi|313613367|gb|EFR87228.1| tyrosine recombinase XerD [Listeria marthii FSL S4-120] Length = 297 Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats. Identities = 43/279 (15%), Positives = 95/279 (34%), Gaps = 26/279 (9%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHI---RSGVE 124 LI ++ L+ N+ +++ + D + I + Sbjct: 3 DLIEDFLHFLIVERGLSANTIKAYQRDLHYFVSYMETSKNLTDPNILERSDIVGFMAFAR 62 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK- 183 + S +++ S+R F + + ++ +P + +E PK+ + +D+++ Sbjct: 63 QEGKSARSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQSLPKVLNLDDVEKLLS 122 Query: 184 ---SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITV---- 235 + G + + E L +GLR ++ R + L + F K + Sbjct: 123 SSDTSTPLGLRDQAMMEILYATGLRVTELVRLKMDDLHLHMGFIQTIGKGDKERIIPLGK 182 Query: 236 -------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286 + + L + F+N+ Q + F K A ++G+ K + Sbjct: 183 TATTVLEQYLEEARPKLRRPKYRNDFVFLNHHGQGLTRQGFWKILKGIAKESGIEKPITP 242 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 H +R AT + GA + G + + YT Sbjct: 243 HTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHV 281 >gi|221135227|ref|ZP_03561530.1| site-specific tyrosine recombinase XerD [Glaciecola sp. HTCC2999] Length = 303 Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats. Identities = 48/301 (15%), Positives = 106/301 (35%), Gaps = 33/301 (10%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESR 126 ++ + + + L+ N+ ++++ Q+ R F IT IR+ + R Sbjct: 10 AQVLDAFLEVLYLEKGLSDNTLSAYQTDLRQLCRFLTQQDAAFSLVDITDTDIRAYLSHR 69 Query: 127 K---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + + S + L+S++ K+ + ++ +P ++ PK T+ ++ Sbjct: 70 QANNVSARSTARALSSLKTFIKYCLSEKIRDDDPLRHIKPPKVAVSLPDSLTEAQVESLL 129 Query: 184 SFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELP 238 + G + + E L +GLR ++ + + ++ V L Sbjct: 130 AAPDTALAVGQRDKAMLEVLYATGLRVTELVGLRLDQMSLLQGVVRVIGKGNKERLVPLG 189 Query: 239 DGFMKLLAMTPIGKETF---------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287 + ++ L + F + +M F K A AG+ + S H Sbjct: 190 EPAIEALTLFLQQGRHELLKHSSDVVFPSTRGTQMTRQTFWHRIKHYAMVAGIQVHLSPH 249 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347 +R AT + GA + G + + YT A R++ +++S Sbjct: 250 TLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVASE---------RLTHIIESHH 300 Query: 348 P 348 P Sbjct: 301 P 301 >gi|315038190|ref|YP_004031758.1| tyrosine recombinase XerD [Lactobacillus amylovorus GRL 1112] gi|312276323|gb|ADQ58963.1| tyrosine recombinase XerD [Lactobacillus amylovorus GRL 1112] Length = 301 Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats. Identities = 47/278 (16%), Positives = 96/278 (34%), Gaps = 25/278 (8%) Query: 71 LKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI-----TTKHIRSGVE 124 L+ I +Y + S L+ N+ ++ ++ + + Sbjct: 6 LQDQIDDYLRFSQVERGLSTNTISAYRQDLEEYLSFIKKEGMSSWPTEASDVDAFLARQR 65 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 SS + ++SMR ++W RQ +NP L ++ PK++ ++E++ + Sbjct: 66 DLNKATSSISRLISSMRKFYQWLARQNIQKLNPMLEIDLPKKERRLPTALSREEVNRLLE 125 Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239 G + R E L +G+R S+ +Q + ++ I+ K + + Sbjct: 126 QPDVEQKLGLRDRAILETLYATGMRVSELINLELQDIHEDLGLIRVLGKGSKERLIPISP 185 Query: 240 GFMKLLAMTPIG------------KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285 + + E F+NN K+ K AG+ + + Sbjct: 186 VALHWIDKYQKQVRDPLILKSGKNDEHLFLNNRGGKLTRQAIWQMIKKYCQMAGITKDVT 245 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 H +R AT + GA + G + + YT Sbjct: 246 PHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYT 283 >gi|227879087|ref|ZP_03996976.1| integrase-recombinase [Lactobacillus crispatus JV-V01] gi|256843076|ref|ZP_05548564.1| tyrosine recombinase XerD [Lactobacillus crispatus 125-2-CHN] gi|256850272|ref|ZP_05555701.1| integrase/recombinase [Lactobacillus crispatus MV-1A-US] gi|262046336|ref|ZP_06019298.1| tyrosine recombinase XerD [Lactobacillus crispatus MV-3A-US] gi|293379759|ref|ZP_06625891.1| tyrosine recombinase XerD [Lactobacillus crispatus 214-1] gi|312977261|ref|ZP_07789009.1| tyrosine recombinase XerD [Lactobacillus crispatus CTV-05] gi|227861328|gb|EEJ68958.1| integrase-recombinase [Lactobacillus crispatus JV-V01] gi|256614496|gb|EEU19697.1| tyrosine recombinase XerD [Lactobacillus crispatus 125-2-CHN] gi|256712909|gb|EEU27901.1| integrase/recombinase [Lactobacillus crispatus MV-1A-US] gi|260573207|gb|EEX29765.1| tyrosine recombinase XerD [Lactobacillus crispatus MV-3A-US] gi|290923668|gb|EFE00539.1| tyrosine recombinase XerD [Lactobacillus crispatus 214-1] gi|310895692|gb|EFQ44758.1| tyrosine recombinase XerD [Lactobacillus crispatus CTV-05] Length = 301 Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats. Identities = 47/290 (16%), Positives = 101/290 (34%), Gaps = 25/290 (8%) Query: 67 KPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKI-----TTKHIR 120 + LK I +Y + + L+ N+ ++ ++ + Sbjct: 2 EKINLKDQIDDYLRYSQVERGLSDNTINAYRQDLEEFQTFVENEGMASWPTEASDVDAFL 61 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + SS + ++SMR ++W RQ +NP L ++ PK++ ++ +M Sbjct: 62 ARQRDLNKATSSISRLISSMRKFYQWLARQNIQKLNPMLEIDLPKKERRLPTALSQAEMN 121 Query: 181 QFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITV 235 + + G + R E L +G+R S+ +Q L +++ ++ K + Sbjct: 122 RLLEQPNTKRKLGIRDRAILETLYATGMRVSELINLELQDLHDDLGLVRVLGKGEKERLI 181 Query: 236 ELPDGFMKLLAMTPIG------------KETFFINNDKQKMNATQFSIWFKAKATKAGV- 282 + + + E F+NN +K+ K A + Sbjct: 182 PISPVALDWIKKYENEVRDPLILQVGKSDEHIFLNNRGKKITRQAIWQMIKKYCQMAAIT 241 Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 + + H +R AT + GA + G + + YT + + L Sbjct: 242 KDVTPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKQIL 291 >gi|227893483|ref|ZP_04011288.1| integrase-recombinase [Lactobacillus ultunensis DSM 16047] gi|227864708|gb|EEJ72129.1| integrase-recombinase [Lactobacillus ultunensis DSM 16047] Length = 303 Score = 147 bits (370), Expect = 3e-33, Method: Composition-based stats. Identities = 44/278 (15%), Positives = 97/278 (34%), Gaps = 25/278 (8%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVE 124 L+ I +Y + + L+ N+ ++ ++ + + + Sbjct: 8 LQDQIDDYLRYSQVERGLSSNTISAYRQDLEEYLSFIEKEGMPSWPTEASDVDAFLARQR 67 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 SS + ++SMR ++W RQ +NP L ++ PK++ T+E++ + Sbjct: 68 DLNKATSSISRLISSMRKFYQWLARQNIQKLNPMLEIDLPKKERRLPTALTQEEVNKLLE 127 Query: 185 FWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPD 239 G + R E L +G+R S+ +Q L +++ ++ + + Sbjct: 128 QPDVKRKLGLRDRAILETLYATGMRVSELINLELQDLHDDLGLVRVIGKGSKERLIPISP 187 Query: 240 GFMKLLA------------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285 + + E F+N+ + + K AG+ + + Sbjct: 188 VALNWIKKYEKEVRDPLILHVGQNDEHIFLNSRGKMLTRQAIWQMIKKYCQMAGIVKDVT 247 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 H +R AT + GA + G + + YT Sbjct: 248 PHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYT 285 >gi|217076522|ref|YP_002334238.1| site-specific recombinase XerD [Thermosipho africanus TCF52B] gi|259710439|sp|B7IFN3|XERC_THEAB RecName: Full=Tyrosine recombinase xerC gi|217036375|gb|ACJ74897.1| site-specific recombinase XerD [Thermosipho africanus TCF52B] Length = 283 Score = 147 bits (370), Expect = 3e-33, Method: Composition-based stats. Identities = 44/283 (15%), Positives = 101/283 (35%), Gaps = 21/283 (7%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR------ 126 + S+Y + N+ +++ + + G I K + +++ Sbjct: 6 EMFSDYLAHV--RRHSENTLKAYKKDVRKFLTYVG-KQINNIERKDVEEFLKALSKGDIT 62 Query: 127 KHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 +P + ++++S+ F + + NP ++ P+ + + T++++ Sbjct: 63 GESPRETTISRYISSLNSFFNYLELSGMIYENPMERIKHPRIRRKIPDFLTEDEVSSLIG 122 Query: 185 FWSEG--SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDG 240 ++E + + A L Y+GLR S+ C + ++ K V LPD Sbjct: 123 AFNEENELRQKTAISLLYYAGLRISELCNLRTTDISFIPPFLRVEMGKGRKDRLVPLPDK 182 Query: 241 FMKLLAMTPI--GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296 + +L + F N K+ ++ + W K +A + K H +R AT Sbjct: 183 VIPILKKYIDLENPKIFVFENGKKHVHPSTVFRWLKEGVKRANIKKDVHPHTLRHSYATH 242 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 G + G + Y AD+ + +++ Sbjct: 243 LIRKGVNIKVVQELLGHTNLSTTSIYLHVADQEK--FDAVKKL 283 >gi|282916763|ref|ZP_06324521.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus D139] gi|283770568|ref|ZP_06343460.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus H19] gi|282319250|gb|EFB49602.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus D139] gi|283460715|gb|EFC07805.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus H19] gi|302333169|gb|ADL23362.1| site-specific recombinase XerD [Staphylococcus aureus subsp. aureus JKD6159] Length = 295 Score = 147 bits (370), Expect = 3e-33, Method: Composition-based stats. Identities = 47/287 (16%), Positives = 101/287 (35%), Gaps = 25/287 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHT 129 +I EY + L+ N+ ++ + + I + I+ + Sbjct: 4 IIEEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYMTEHHISHIDFIDRQLIQECLGHLIDQ 63 Query: 130 PSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 SA +F++++R ++A+R++Y A +P + ++ PK + +++ Sbjct: 64 GQSAKSIARFISTIRSFHQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLALLETP 123 Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 G + R E L +G+R S+ ++H+ + ++ V L D Sbjct: 124 DLNKINGYRDRTMLELLYATGMRVSELIHLELEHVNLIMGFVRVFGKGDKERIVPLGDAV 183 Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289 ++ L F+N + ++ K KA + K+ H + Sbjct: 184 IEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKANIKKTLTPHTL 243 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKN 335 R AT + GA + G + + YT + +IR Sbjct: 244 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQ 290 >gi|77919114|ref|YP_356929.1| site-specific recombinase [Pelobacter carbinolicus DSM 2380] gi|77545197|gb|ABA88759.1| tyrosine recombinase XerD subunit [Pelobacter carbinolicus DSM 2380] Length = 295 Score = 147 bits (370), Expect = 3e-33, Method: Composition-based stats. Identities = 50/286 (17%), Positives = 100/286 (34%), Gaps = 25/286 (8%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRK 127 + + L+ N+ ++ + + G +++ + + + + K Sbjct: 2 DQYLDLFLNYLVVEKGLSANTLDAYGRDLARYLEFLSVKGVTGLEQVSPPMVVAFLSALK 61 Query: 128 HTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 SA + L S+R+ ++ + + NP V PK + + T ++++ S Sbjct: 62 ERGLSARSRARKLVSLRMFHRFLLAENLATTNPAAQVAAPKSFAKLPQILTPDEVESLLS 121 Query: 185 FW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPD 239 + + E L +GLR S+ +Q LQ ++ + V L D Sbjct: 122 APGNTTCFDLRDKAMLEILYATGLRVSELVGLTLQDLQLDVGYLTAFGKRAKQRIVPLGD 181 Query: 240 GFMKLLAMTPIGKE----------TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287 + + F+N + F K +A +AG+NK + H Sbjct: 182 AAREAVLEYLSHGRGELAGEVGSGFLFLNRSGNGLTRQGFWKMMKRRAMEAGINKNITPH 241 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 +R AT D GA + A G + + YT R R+ + Sbjct: 242 TLRHSFATHLLDNGADLRAVQAMLGHADISTTQIYTHVT-RERMKV 286 >gi|329730857|gb|EGG67235.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus 21193] Length = 295 Score = 147 bits (370), Expect = 3e-33, Method: Composition-based stats. Identities = 46/287 (16%), Positives = 100/287 (34%), Gaps = 25/287 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHT 129 +I EY + L+ N+ ++ + + I + I + Sbjct: 4 IIEEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYMTEHHISHIDFIDRQLILECLGHLIDQ 63 Query: 130 PSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 SA +F++++R ++A+R++Y A +P + ++ PK + +++ Sbjct: 64 GQSAKSIARFISTIRSFHQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLALLETP 123 Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 G + R E L +G+R S+ ++++ + ++ V L D Sbjct: 124 DLNKINGYRDRTMLELLYATGMRVSELIHLELENVNLIMGFVRVFGKGDKERIVPLGDAV 183 Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289 ++ L F+N + ++ K KA + K+ H + Sbjct: 184 IEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKANIKKTLTPHTL 243 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKN 335 R AT + GA + G + + YT + +IR Sbjct: 244 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQ 290 >gi|295692872|ref|YP_003601482.1| tyrosine recombinase xerd [Lactobacillus crispatus ST1] gi|295030978|emb|CBL50457.1| Tyrosine recombinase xerD [Lactobacillus crispatus ST1] Length = 301 Score = 147 bits (370), Expect = 3e-33, Method: Composition-based stats. Identities = 48/290 (16%), Positives = 101/290 (34%), Gaps = 25/290 (8%) Query: 67 KPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKI-----TTKHIR 120 + LK I +Y + + L+ N+ ++ ++ + Sbjct: 2 EKNNLKDQIDDYLRYSQVERGLSDNTINAYRQDLEEFRTFVENEGMASWPTEASDVDAFL 61 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + SS + ++SMR ++W RQ +NP L ++ PK++ ++ +M Sbjct: 62 ARQRDLNKATSSISRLISSMRKFYQWLARQNIQKLNPMLEIDLPKKERRLPTALSQAEMN 121 Query: 181 QFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITV 235 + + G + R E L +G+R S+ +Q L +N+ ++ K + Sbjct: 122 RLLEQPNTKRKLGIRDRAILETLYATGMRVSELINLELQDLHDNLGLVRVLGKGEKERLI 181 Query: 236 ELPDGFMKLLAMTPIG------------KETFFINNDKQKMNATQFSIWFKAKATKAGV- 282 + + + E F+NN +K+ K A + Sbjct: 182 PISPVALDWIKKYENEVRDPLILQVGKSDEHIFLNNRGKKITRQAIWQMIKKYCQMAAIT 241 Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 + + H +R AT + GA + G + + YT + + L Sbjct: 242 KDVTPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKQIL 291 >gi|295695953|ref|YP_003589191.1| tyrosine recombinase XerD [Bacillus tusciae DSM 2912] gi|295411555|gb|ADG06047.1| tyrosine recombinase XerD [Bacillus tusciae DSM 2912] Length = 295 Score = 147 bits (370), Expect = 3e-33, Method: Composition-based stats. Identities = 46/279 (16%), Positives = 99/279 (35%), Gaps = 24/279 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHI---RSGVESRK 127 I + + LA ++ S+ S + G D+ + +HI + ++ Sbjct: 5 IERFIRYLAIEKGLAPSTLGSYRSDLEDFSDFLQRTGCGDWPETGRRHIVAYLAHLQKLG 64 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 P++ + + S+R +++ R+ + ++P ++ PK R E++++ + Sbjct: 65 RAPATVSRHMASLRSFYQFLSREGLIEVDPTGQLDSPKADKRLPRVLNVEEVERLLAAPE 124 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 + R E L +G+R S+ V + N+ +K V L + Sbjct: 125 GLTPMALRDRAMLEMLYATGVRVSELVSLNVTDVNLNMGYVKCYGKGSKERIVPLGSAAL 184 Query: 243 KLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 + + F+N+ +++ F K A AG+ K + H +R Sbjct: 185 EAVHAYLTRGRAGLLKNGDPGALFVNHQGKRLTRQGFWKILKKYAQTAGIQKAITPHTLR 244 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + GA + G + + YT Sbjct: 245 HSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTQTR 283 >gi|53802409|ref|YP_112927.1| tyrosine recombinase XerD [Methylococcus capsulatus str. Bath] gi|53756170|gb|AAU90461.1| tyrosine recombinase XerD [Methylococcus capsulatus str. Bath] Length = 309 Score = 147 bits (370), Expect = 3e-33, Method: Composition-based stats. Identities = 44/280 (15%), Positives = 90/280 (32%), Gaps = 24/280 (8%) Query: 74 LISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESR 126 I + +S L+ ++ ++ S ++T + SR Sbjct: 18 AIQRFVESLWVEEGLSPHTLKAYGSDLRLFAAWLATNRCAELTALTGEDIEAYLGWRHSR 77 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 K ++ + L+S+R + +R+ + +PC + PK T+ +++ + Sbjct: 78 KSKSRTSARVLSSIRHFCAYRLRRGEITGDPCALIAPPKLGRFLPDTLTESEVEALLAAP 137 Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 + + R E L +GLR S+ + ++ V + + Sbjct: 138 DVDTPLGFRDRAMLEMLYATGLRVSELVGLSFGQISLRQGVVRISGKGDKDRLVPVGEEA 197 Query: 242 MKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289 + L + F+ + M F K A +AG+ S H + Sbjct: 198 LDWLERYLDKVRPVTLKGRQSDFLFVTDRGGAMTRQAFWHLIKRYAGQAGISKPLSPHTL 257 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + GA + G + + YT A Sbjct: 258 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQER 297 >gi|323439501|gb|EGA97222.1| site-specific recombinase [Staphylococcus aureus O11] gi|323441531|gb|EGA99182.1| site-specific recombinase [Staphylococcus aureus O46] Length = 295 Score = 147 bits (370), Expect = 3e-33, Method: Composition-based stats. Identities = 47/287 (16%), Positives = 101/287 (35%), Gaps = 25/287 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHT 129 +I EY + L+ N+ ++ + + I + I+ + Sbjct: 4 IIEEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYMTEHHISHIDFIDRQLIQECLGHLIDQ 63 Query: 130 PSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 SA +F++++R ++A+R++Y A +P + ++ PK + +++ Sbjct: 64 GQSAKSIARFISTIRSFHQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLALLETP 123 Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 G + R E L +G+R S+ ++H+ + ++ V L D Sbjct: 124 DLNKINGYRDRTMLELLYATGMRVSELIHLELEHVNLIMGFVRVFGKGDKERIVPLGDTV 183 Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289 ++ L F+N + ++ K KA + K+ H + Sbjct: 184 IEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKANIKKTLTPHTL 243 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKN 335 R AT + GA + G + + YT + +IR Sbjct: 244 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQ 290 >gi|169831443|ref|YP_001717425.1| tyrosine recombinase XerD [Candidatus Desulforudis audaxviator MP104C] gi|169638287|gb|ACA59793.1| tyrosine recombinase XerD [Candidatus Desulforudis audaxviator MP104C] Length = 295 Score = 146 bits (369), Expect = 3e-33, Method: Composition-based stats. Identities = 50/280 (17%), Positives = 91/280 (32%), Gaps = 24/280 (8%) Query: 78 YRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSG---VESRKHTP 130 + H L+ N+ ++ Q G D + HI + + P Sbjct: 8 FLNHLHVERGLSENTLAAYRGDLQQFGAFLAAQGVRDLNDLQASHITAYLLAQKRLGRRP 67 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----W 186 ++ + L+++R K+ + V NP PK+ R +++ + + Sbjct: 68 ATVARRLSAVRAFLKFLTAEGLVTANPAEYTGSPKQAQRLPRVLRVDEVDRLLTAPDTAN 127 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-----------ITV 235 G + R E L SGLR S++ V L ++ G V Sbjct: 128 PMGLRDRALMEVLYASGLRVSEAVNLKVGDLDLRGGLVRCVGKGGRERVVPVGGEAVRLV 187 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293 + + L + F+N Q + K A +AG+ K + H +R Sbjct: 188 DEYLARSRPLLLKGRRTRFLFVNRRGQPLTRQTVWKLLKRYAREAGIQKEITPHTLRHSF 247 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 AT + GA + G + + YT R + Sbjct: 248 ATHLLENGADLRAVQEMLGHADIVTTQIYTHLTSRGLRAV 287 >gi|85859051|ref|YP_461253.1| integrase/recombinase [Syntrophus aciditrophicus SB] gi|85722142|gb|ABC77085.1| integrase/recombinase [Syntrophus aciditrophicus SB] Length = 296 Score = 146 bits (369), Expect = 4e-33, Method: Composition-based stats. Identities = 47/283 (16%), Positives = 91/283 (32%), Gaps = 25/283 (8%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESRKH 128 LI EY + N+ ++ + +I++ G + +I+ + + K Sbjct: 4 QLIDEYLNYLTVEKGASHNTLEAYGRDLSRYSGLIQERGIKEIHEISPDDVIYYMAELKR 63 Query: 129 TPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 SA + L ++R +K+ +R++ + NP +E K + E+M Q S Sbjct: 64 KGLSANSINRSLAALRGFYKFLLREKKIEQNPVAEIELAKVWMRLPDTLSHEEMDQLLSQ 123 Query: 186 WSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDG 240 + + E + +GLR S+ + + + K V + Sbjct: 124 PGVRTDSAIRDTAMLELMYATGLRVSELISLTTGSINWQVGYLVVQGKGNKERIVPIGQV 183 Query: 241 FMKLLAMTPIGKETFFINNDKQK----------MNATQFSIWFKAKATKAGV--NKSAHG 288 + + I + M F + A KAG+ H Sbjct: 184 AYEHVRRYFDEVRPKCIRGAQTNVLFLNKSGQGMTRQGFWKLVRKYAVKAGLQKKVHPHT 243 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 R A+ + GA + G + + YT R L Sbjct: 244 FRHSFASHLLEGGADLRSVQMMLGHADISTTQIYTHVT-REHL 285 >gi|254975124|ref|ZP_05271596.1| phage integrase family site specific recombinase [Clostridium difficile QCD-66c26] gi|255092513|ref|ZP_05321991.1| phage integrase family site specific recombinase [Clostridium difficile CIP 107932] gi|255306536|ref|ZP_05350707.1| phage integrase family site specific recombinase [Clostridium difficile ATCC 43255] gi|255314251|ref|ZP_05355834.1| phage integrase family site specific recombinase [Clostridium difficile QCD-76w55] gi|255516930|ref|ZP_05384606.1| phage integrase family site specific recombinase [Clostridium difficile QCD-97b34] gi|255650033|ref|ZP_05396935.1| phage integrase family site specific recombinase [Clostridium difficile QCD-37x79] gi|260683181|ref|YP_003214466.1| prophage lambdaba04, site-specific recombinase [Clostridium difficile CD196] gi|260686779|ref|YP_003217912.1| prophage lambdaba04, site-specific recombinase, phage integrase family [Clostridium difficile R20291] gi|306519568|ref|ZP_07405915.1| prophage lambdaba04, site-specific recombinase, phage integrase family protein [Clostridium difficile QCD-32g58] gi|260209344|emb|CBA62764.1| prophage lambdaba04, site-specific recombinase, phage integrase family [Clostridium difficile CD196] gi|260212795|emb|CBE03954.1| prophage lambdaba04, site-specific recombinase, phage integrase family [Clostridium difficile R20291] Length = 376 Score = 146 bits (369), Expect = 4e-33, Method: Composition-based stats. Identities = 49/360 (13%), Positives = 114/360 (31%), Gaps = 45/360 (12%) Query: 15 RTRHGKIIYYFRKG--HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 R R K YYF G G+R ++ +T A + + +L Sbjct: 6 RKRSNKWYYYFDLGIVEGKRKKVERVGGNTKKEAEKALREALNEYENSGIVFEESNISLS 65 Query: 73 WLISEYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 + + K + N++ S+ + I K G + + +T +++ + + Sbjct: 66 DYLDFWYKEYVLLNCKYNTQESYRINIEKHIKPKLGAYKVKALTPAILQNFINKKYKEDY 125 Query: 132 SAIQFLTSMRVLFK---------WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 S L ++ + + +E + + K +T ++ T E+ Q Sbjct: 126 SQN-TLQVLKAILHRSLKSAVHPYKHIRENPMQYVSIPKTKSKTETNKVKTITLEEFNQI 184 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------- 229 + + + S R+ ++G+R + ++ + +I + T Sbjct: 185 LNIFPQDSFQRIVLLIGFHTGMRRGEIIALKWDNIDLDNKTITVKHTLIKKPNGMFELGQ 244 Query: 230 ----GTIITVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSI 271 + T+ D +K L + + Q++N Sbjct: 245 PKTESSCRTIFTGDTLIKALKEHKLYQKKMKLKYGEFYFDSDWVCTKENGQQVNTHTLDT 304 Query: 272 WFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330 + + H +R AT+ + GA ++ G + TY+ D+++ Sbjct: 305 IVRQIRVALNNDFHFHSLRHAHATLLLENGANIKDIQNRLGHSQLSTTMDTYSHVTDKMK 364 >gi|190150873|ref|YP_001969398.1| tyrosine recombinase XerD [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307264224|ref|ZP_07545815.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189916004|gb|ACE62256.1| tyrosine recombinase XerD [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306870470|gb|EFN02223.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 297 Score = 146 bits (369), Expect = 4e-33, Method: Composition-based stats. Identities = 42/284 (14%), Positives = 97/284 (34%), Gaps = 24/284 (8%) Query: 71 LKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVES 125 L +I ++ + L+ N+ ++ + + G Sbjct: 4 LDPIIEQFLDTLWQEHGLSENTSAAYRLDLESFSEWLPTPKAFLTLDHFDLQAFLGGRLE 63 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + +S+ + L+ +R F++ + Y +P L++ P++ + ++E + Sbjct: 64 LGYKATSSARMLSCLRKFFRFLYTENYRQDDPTLTLTSPRKPAHLPKSLSEEQVMDLLDS 123 Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTII------- 233 + + + E L +GLR S+ + +L ++ Sbjct: 124 PNTLDPIELRDKAMLELLYATGLRVSELVSLSIDNLSLRQGVVRVVGKGDKERLVPIGEE 183 Query: 234 ---TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287 ++ + + + + + + F + Q+M F K A AG++ S H Sbjct: 184 AGYWIQEFFQYGRAILLNNLQSDVVFPSRRGQQMTRQTFWHRIKHYAVLAGIDSEKLSPH 243 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +R AT + GA + G + + YT A + RL Sbjct: 244 VLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVA-KARL 286 >gi|197285863|ref|YP_002151735.1| tyrosine recombinase [Proteus mirabilis HI4320] gi|227356364|ref|ZP_03840752.1| tyrosine recombinase [Proteus mirabilis ATCC 29906] gi|34222762|sp|O31206|XERD_PROMI RecName: Full=Tyrosine recombinase xerD gi|2645800|gb|AAB87499.1| site-specific recombinase [Proteus mirabilis] gi|194683350|emb|CAR44057.1| tyrosine recombinase [Proteus mirabilis HI4320] gi|227163474|gb|EEI48395.1| tyrosine recombinase [Proteus mirabilis ATCC 29906] Length = 313 Score = 146 bits (369), Expect = 4e-33, Method: Composition-based stats. Identities = 42/280 (15%), Positives = 88/280 (31%), Gaps = 24/280 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGVESRK 127 +I ++ S L+ N+ ++ + + + + Sbjct: 22 IIEQFLDSIWLEQGLSANTLSAYRLDLQALSQWLVTQKLNWLSVTTLDLHAFLATRLDEG 81 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + +SA + L+++R F++ R++ +P + PK + +++ ++ S Sbjct: 82 YKATSAARLLSTLRRFFQYLYREKLRQDDPSALLSTPKLPKRLPKDLSEQQVENLLSAPC 141 Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 + + E L GLR S+ + + ++ V L + + Sbjct: 142 IDEPIELRDKAMLEVLYACGLRVSELVGLSLSDISLRQGVLRVIGKGDKERLVPLGEEAI 201 Query: 243 KLLAMTPIGKETFFINNDK----------QKMNATQFSIWFKAKATKAGVN---KSAHGV 289 L + QKM F K A AG++ S H + Sbjct: 202 YWLEQYLQYGRPALMQGKTDDIVFPSLRGQKMTRQTFWHRIKHYAVIAGIDSEKLSPHVL 261 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + GA + G + + YT A Sbjct: 262 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 301 >gi|313884218|ref|ZP_07817984.1| tyrosine recombinase XerD [Eremococcus coleocola ACS-139-V-Col8] gi|312620665|gb|EFR32088.1| tyrosine recombinase XerD [Eremococcus coleocola ACS-139-V-Col8] Length = 301 Score = 146 bits (369), Expect = 4e-33, Method: Composition-based stats. Identities = 47/280 (16%), Positives = 99/280 (35%), Gaps = 24/280 (8%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRK--SGDFDY-RKITTKHIRSGVESR 126 + +S++ + L+ N+ ++E + R + D +I T +R + S Sbjct: 7 IDDYLSDFLRFLAIDKGLSQNTIANYELDLKKFFRFCQIQNMDLLSQIDTDLVRLFIASL 66 Query: 127 ---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + S+A + L+S+R F + + + V+ NP +E PK+ + +++ Sbjct: 67 NKAGYAASTAARILSSLRAFFHFLMVEGVVSKNPMALIESPKKARTLPHSLSMAEVEAIL 126 Query: 184 SFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELP 238 + + + + R FE L +GLR S+ + L + F K V L Sbjct: 127 AAPNTDTKFGIRDRAMFETLYATGLRVSELANLSLGDLHLDLRFIQTLGKGNKERMVPLG 186 Query: 239 DGFMKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGV--NKSA 286 + + + ++ + + AG+ S Sbjct: 187 EEAVFWIEKYLDQVRDGWLPKAGSDYLFLTQRGKAFTRQGIWKTLNKYVSLAGIQKKVSP 246 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 H +R AT + GA + G + + + YT + Sbjct: 247 HVLRHSFATHILENGADLRLVQELLGHENISTTQIYTHIS 286 >gi|15642416|ref|NP_232049.1| site-specific tyrosine recombinase XerD [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587637|ref|ZP_01677401.1| tyrosine recombinase XerD [Vibrio cholerae 2740-80] gi|121728363|ref|ZP_01681392.1| tyrosine recombinase XerD [Vibrio cholerae V52] gi|147673043|ref|YP_001217919.1| site-specific tyrosine recombinase XerD [Vibrio cholerae O395] gi|153802800|ref|ZP_01957386.1| tyrosine recombinase XerD [Vibrio cholerae MZO-3] gi|153818418|ref|ZP_01971085.1| tyrosine recombinase XerD [Vibrio cholerae NCTC 8457] gi|153822226|ref|ZP_01974893.1| tyrosine recombinase XerD [Vibrio cholerae B33] gi|153826869|ref|ZP_01979536.1| tyrosine recombinase XerD [Vibrio cholerae MZO-2] gi|227082540|ref|YP_002811091.1| integrase/recombinase XerD [Vibrio cholerae M66-2] gi|229507521|ref|ZP_04397026.1| tyrosine recombinase XerD [Vibrio cholerae BX 330286] gi|229512283|ref|ZP_04401762.1| tyrosine recombinase XerD [Vibrio cholerae B33] gi|229514045|ref|ZP_04403507.1| tyrosine recombinase XerD [Vibrio cholerae TMA 21] gi|229519419|ref|ZP_04408862.1| tyrosine recombinase XerD [Vibrio cholerae RC9] gi|229521248|ref|ZP_04410668.1| tyrosine recombinase XerD [Vibrio cholerae TM 11079-80] gi|229528596|ref|ZP_04417986.1| tyrosine recombinase XerD [Vibrio cholerae 12129(1)] gi|229607027|ref|YP_002877675.1| site-specific tyrosine recombinase XerD [Vibrio cholerae MJ-1236] gi|254226633|ref|ZP_04920213.1| tyrosine recombinase XerD [Vibrio cholerae V51] gi|254291785|ref|ZP_04962570.1| tyrosine recombinase XerD [Vibrio cholerae AM-19226] gi|254849542|ref|ZP_05238892.1| tyrosine recombinase XerD [Vibrio cholerae MO10] gi|255746910|ref|ZP_05420855.1| site-specific recombinase XerD [Vibrio cholera CIRS 101] gi|262161547|ref|ZP_06030657.1| site-specific recombinase XerD [Vibrio cholerae INDRE 91/1] gi|262168398|ref|ZP_06036095.1| site-specific recombinase XerD [Vibrio cholerae RC27] gi|262190652|ref|ZP_06048886.1| site-specific recombinase XerD [Vibrio cholerae CT 5369-93] gi|297581043|ref|ZP_06942968.1| tyrosine recombinase xerD [Vibrio cholerae RC385] gi|298500223|ref|ZP_07010028.1| tyrosine recombinase XerD [Vibrio cholerae MAK 757] gi|34223076|sp|Q9KPE9|XERD_VIBCH RecName: Full=Tyrosine recombinase xerD gi|9656993|gb|AAF95562.1| integrase/recombinase XerD [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548147|gb|EAX58220.1| tyrosine recombinase XerD [Vibrio cholerae 2740-80] gi|121629354|gb|EAX61785.1| tyrosine recombinase XerD [Vibrio cholerae V52] gi|124121665|gb|EAY40408.1| tyrosine recombinase XerD [Vibrio cholerae MZO-3] gi|125620852|gb|EAZ49206.1| tyrosine recombinase XerD [Vibrio cholerae V51] gi|126511051|gb|EAZ73645.1| tyrosine recombinase XerD [Vibrio cholerae NCTC 8457] gi|126520236|gb|EAZ77459.1| tyrosine recombinase XerD [Vibrio cholerae B33] gi|146314926|gb|ABQ19465.1| tyrosine recombinase XerD [Vibrio cholerae O395] gi|149739285|gb|EDM53541.1| tyrosine recombinase XerD [Vibrio cholerae MZO-2] gi|150422297|gb|EDN14259.1| tyrosine recombinase XerD [Vibrio cholerae AM-19226] gi|227010428|gb|ACP06640.1| integrase/recombinase XerD [Vibrio cholerae M66-2] gi|227014311|gb|ACP10521.1| integrase/recombinase XerD [Vibrio cholerae O395] gi|229332370|gb|EEN97856.1| tyrosine recombinase XerD [Vibrio cholerae 12129(1)] gi|229341780|gb|EEO06782.1| tyrosine recombinase XerD [Vibrio cholerae TM 11079-80] gi|229344108|gb|EEO09083.1| tyrosine recombinase XerD [Vibrio cholerae RC9] gi|229349226|gb|EEO14183.1| tyrosine recombinase XerD [Vibrio cholerae TMA 21] gi|229352248|gb|EEO17189.1| tyrosine recombinase XerD [Vibrio cholerae B33] gi|229355026|gb|EEO19947.1| tyrosine recombinase XerD [Vibrio cholerae BX 330286] gi|229369682|gb|ACQ60105.1| tyrosine recombinase XerD [Vibrio cholerae MJ-1236] gi|254845247|gb|EET23661.1| tyrosine recombinase XerD [Vibrio cholerae MO10] gi|255735312|gb|EET90712.1| site-specific recombinase XerD [Vibrio cholera CIRS 101] gi|262023290|gb|EEY41994.1| site-specific recombinase XerD [Vibrio cholerae RC27] gi|262028858|gb|EEY47512.1| site-specific recombinase XerD [Vibrio cholerae INDRE 91/1] gi|262033466|gb|EEY51970.1| site-specific recombinase XerD [Vibrio cholerae CT 5369-93] gi|297534869|gb|EFH73705.1| tyrosine recombinase xerD [Vibrio cholerae RC385] gi|297540916|gb|EFH76970.1| tyrosine recombinase XerD [Vibrio cholerae MAK 757] gi|327484912|gb|AEA79319.1| Tyrosine recombinase XerD [Vibrio cholerae LMA3894-4] Length = 302 Score = 146 bits (368), Expect = 4e-33, Method: Composition-based stats. Identities = 45/280 (16%), Positives = 104/280 (37%), Gaps = 24/280 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR---K 127 L+ ++ + + LA N+ S+ + +++ + I+ ++ Sbjct: 11 LVEQFLDTMWFERGLAENTVASYRNDLSKLLEWMAQNQYRLDFISFAGLQEYQSWLSEQN 70 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 + P+S + L+++R LF++ R++ A +P + PK T + ++ ++ S Sbjct: 71 YKPTSKARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPTRLPKDLSEAQVEALLSAPD 130 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM 242 + + E L +GLR ++ ++++ ++ G V + + + Sbjct: 131 PQSPLELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVMGKGGKERLVPMGENAI 190 Query: 243 KLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289 + + + F ++ Q+M F K A AG++ S H + Sbjct: 191 EWIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAGIDVEKLSPHVL 250 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + GA + G + + YT A Sbjct: 251 RHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER 290 >gi|227513310|ref|ZP_03943359.1| site-specific DNA tyrosine recombinase XerD [Lactobacillus buchneri ATCC 11577] gi|227083511|gb|EEI18823.1| site-specific DNA tyrosine recombinase XerD [Lactobacillus buchneri ATCC 11577] Length = 295 Score = 146 bits (368), Expect = 4e-33, Method: Composition-based stats. Identities = 45/276 (16%), Positives = 96/276 (34%), Gaps = 24/276 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHTPS 131 +++Y L+ N+ S++ + I D K+ I + +E+ + Sbjct: 5 LADYLHFLRVERGLSENTIKSYQQDLSEAIHFFQKTTKDISKVDQFLILNYLENLQQEKK 64 Query: 132 SAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187 S + ++S+R F++ + V +P L V+ PK+ + ++ + S + Sbjct: 65 SRNTVIRTVSSLRNFFRYLAQFGVVPDDPMLKVDSPKQSKTLPDVLSVSEVNKLLSMPNV 124 Query: 188 ---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMK 243 G + R E L +GLR S+ + L + K + + D + Sbjct: 125 SKPLGVRDRAMLETLYATGLRVSELVNLRLVDLHLPMKLIQTVGKGDRERIIPIGDVAID 184 Query: 244 LLAMT-----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 + + F+N +++ K AG+ + + H +R Sbjct: 185 WITQYLKTTRIDLLRKRTNTDFVFLNAHGRRLTRQAIWQMIKKYVKLAGIKRHVTPHTLR 244 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 AT + GA + G + + YT + Sbjct: 245 HSFATHLLENGADLRIVQELLGHADISTTQIYTHIS 280 >gi|240103689|ref|YP_002959998.1| xerC/D integrase/recombinase protein (xerC/xerD) [Thermococcus gammatolerans EJ3] gi|239911243|gb|ACS34134.1| xerC/D integrase/recombinase protein (xerC/xerD) [Thermococcus gammatolerans EJ3] Length = 283 Score = 146 bits (368), Expect = 5e-33, Method: Composition-based stats. Identities = 42/283 (14%), Positives = 98/283 (34%), Gaps = 18/283 (6%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 I E+ + N+ + Y + + G D+R + + ++ S Sbjct: 8 AIEEFATYLDLEGKSPNTIRMYTYYVRRYLEHGGGLDFRS--ALRFLARLRREGYSNRSL 65 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-GSQP 192 + ++R F++ ++ P+ + T+ED+++ S + Sbjct: 66 NLVVQALRAYFRFEG-----LDEEAEKLKPPRVPKSLPKALTQEDVRKLLSVIPLTRRRD 120 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250 RL L +GLR S+ C + + I +++ K V +P + + Sbjct: 121 RLIVLLLYGAGLRVSELCNLKKEDIDLDRGIITVRGGKGAKDRVVPIPPALTEEIKAYLS 180 Query: 251 GKETFFIN-------NDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGAT 303 ++ K +++ KAGV + H +R AT + G Sbjct: 181 ERDDDSEYLLVEVRRGTKDRLSPKTVWYLLNRYGKKAGVKVTPHMLRHSFATHMLERGVD 240 Query: 304 AHELMATYGWKTVDQAETYTKG-ADRIRLGIKNSRRISSVVDS 345 + G + + YTK + ++ + ++ + S+++ Sbjct: 241 IRAIQELLGHSNLSTTQIYTKVTVEHLKKAQEKAKLLESLMEE 283 >gi|239827607|ref|YP_002950231.1| site-specific tyrosine recombinase XerD [Geobacillus sp. WCH70] gi|239807900|gb|ACS24965.1| tyrosine recombinase XerD [Geobacillus sp. WCH70] Length = 299 Score = 146 bits (368), Expect = 5e-33, Method: Composition-based stats. Identities = 43/271 (15%), Positives = 100/271 (36%), Gaps = 26/271 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIR---SGVESRKHTPSSAIQFL 137 +LA N+ IS+E + + +T HI ++ + ++P + + + Sbjct: 17 RNLAKNTIISYERDLKKYAHYLRHVEQIQSWNDVTRLHIMQFLKFLKEKGNSPKTIARHI 76 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPR 193 S+R ++ +R++ +P + +E P+ + + + E+++ + + + Sbjct: 77 ASIRSFHQFLLREKVAEQDPSVHIESPQMERTLPKVLSLEEVEALLEAPKTNTPIGVRDK 136 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------------ITVELPDG 240 E L +G+R S+ + + + ++ G + V L Sbjct: 137 AMLELLYATGMRVSELVNLNLSDVHLTMGFVRCYGKGKKERIVPVGSMALNALKVYLETA 196 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298 KL+ + F+N+ +++ F K A +A + K + H +R AT Sbjct: 197 RPKLINSKKRTTDALFLNHHGERLTRQGFWKILKKLAKEANIEKELTPHTLRHSFATHLL 256 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRI 329 + GA + G + + YT Sbjct: 257 ENGADLRAVQELLGHADISTTQIYTHVTKTR 287 >gi|242399198|ref|YP_002994622.1| Probable tyrosine recombinase xerC-like protein [Thermococcus sibiricus MM 739] gi|242265591|gb|ACS90273.1| Probable tyrosine recombinase xerC-like protein [Thermococcus sibiricus MM 739] Length = 278 Score = 146 bits (368), Expect = 5e-33, Method: Composition-based stats. Identities = 40/281 (14%), Positives = 99/281 (35%), Gaps = 18/281 (6%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134 I E++ + + + Y ++ ++ + +YR + ++ ++ S Sbjct: 5 IEEFKTYLELEGKSPQTVRMYTYYVERFLKDVENPNYRS--ALRFLAKLKKEGYSNKSLN 62 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-GSQPR 193 + +++ F++ ++ PK + T+ED+++ + + R Sbjct: 63 LVVQALKSYFRFEG-----LDEDAEKLKSPKVPRSLPKSLTREDVKRLLNAVPPTRKRDR 117 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLLAMT--- 248 L L +GLR S+ C ++ + N + + V L +K + Sbjct: 118 LIILLLYGTGLRVSEVCNLKIKDIDFNRGVLTVEGGKGAKDRIVPLSGSLLKEIEKYLET 177 Query: 249 ----PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATA 304 K K++ K KA V+ + H +R AT + G Sbjct: 178 RKDGSEYLFVEIRREKKDKISPKTVWYLLKKYGNKANVSVTPHMLRHSFATHMLERGVDI 237 Query: 305 HELMATYGWKTVDQAETYTKG-ADRIRLGIKNSRRISSVVD 344 + G ++ + YTK + ++ + ++ I +++ Sbjct: 238 RVIQEILGHSSLSTTQIYTKVTVEHLKKAQEKAKLIDELIE 278 >gi|255320980|ref|ZP_05362153.1| tyrosine recombinase XerD [Acinetobacter radioresistens SK82] gi|262379931|ref|ZP_06073086.1| tyrosine recombinase XerD [Acinetobacter radioresistens SH164] gi|255301944|gb|EET81188.1| tyrosine recombinase XerD [Acinetobacter radioresistens SK82] gi|262298125|gb|EEY86039.1| tyrosine recombinase XerD [Acinetobacter radioresistens SH164] Length = 306 Score = 146 bits (368), Expect = 5e-33, Method: Composition-based stats. Identities = 42/283 (14%), Positives = 91/283 (32%), Gaps = 19/283 (6%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130 + +R +++ ++R ++ S Q ++ I + +P Sbjct: 20 FLQGFRDFLIAQTVSPHTRNAYLSDLIQCSEYCPSTPLPLWNSEDIADVLFELTKQGKSP 79 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 S + L+++R FK+ Q+ + NP + + PK + ++ D++ + Sbjct: 80 RSIARTLSALRSFFKFMREQQLRSDNPVATHKTPKLGRALPKDLSELDVEHLLHAPDINT 139 Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLL 245 + R E L GLR ++ ++ + ++ V L ++ + Sbjct: 140 ALGLRDRAMLEVLYACGLRVTELLNLRLELINLKQGYLRITGKGNKERLVPLGQVAIEWV 199 Query: 246 AMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 M+ F K A +AG+ S H +R A Sbjct: 200 EKYLNEARPQLYKSATDYLFLTQHGGIMSRQNFWYAIKRYALQAGIQAELSPHTLRHAFA 259 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 T + GA + G + + YT A + + Sbjct: 260 THLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQIRMQQLHAAH 302 >gi|188534907|ref|YP_001908704.1| Tyrosine recombinase XerD [Erwinia tasmaniensis Et1/99] gi|188029949|emb|CAO97833.1| Tyrosine recombinase XerD [Erwinia tasmaniensis Et1/99] Length = 297 Score = 146 bits (368), Expect = 5e-33, Method: Composition-based stats. Identities = 45/281 (16%), Positives = 96/281 (34%), Gaps = 24/281 (8%) Query: 73 WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI-----RSGVESR 126 LI ++ + +LA N+ S+ + + + I + Sbjct: 5 DLIEQFLDALWIERNLAQNTVASYRLDLRSLCDWLACQPLSLLNAQAIDLRAFLAQRLEG 64 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + SS+ + L++MR LF++ R++ +P + PK + ++ +++ Sbjct: 65 GYKASSSARLLSAMRRLFQYLYREKLREDDPSALLSSPKLPQRLPKDLSEAQVERLLQSP 124 Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241 + + E L +GLR ++ + + ++ K V + + Sbjct: 125 CLEQPIELRDKAMLELLYATGLRVTELVGLTLSDISLRQGVVRVLGKGNKERLVPMGEEA 184 Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 + + + F +N ++M F K AT AG++ S H Sbjct: 185 VHWIEQFIEYGRPWLLNGQTLDVLFPSNRAKQMTRQTFWHRIKHYATLAGIDSDKLSPHV 244 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R AT + GA + G + + YT A Sbjct: 245 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 285 >gi|153214077|ref|ZP_01949211.1| tyrosine recombinase XerD [Vibrio cholerae 1587] gi|124115503|gb|EAY34323.1| tyrosine recombinase XerD [Vibrio cholerae 1587] Length = 302 Score = 146 bits (368), Expect = 5e-33, Method: Composition-based stats. Identities = 45/280 (16%), Positives = 104/280 (37%), Gaps = 24/280 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR---K 127 L+ ++ + + LA N+ S+ + +++ + I+ ++ Sbjct: 11 LVEQFLDTMWFERGLAENTVASYRNDLSKLLEWMAQNQYRLDFISFAGLQEYQSWLSEQN 70 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 + P+S + L+++R LF++ R++ A +P + PK T + ++ ++ S Sbjct: 71 YKPTSKARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPTRLPKDLSEAQVEALLSAPD 130 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM 242 + + E L +GLR ++ ++++ ++ G V + + + Sbjct: 131 PQSPLELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVMGKGGKERLVPMGENAI 190 Query: 243 KLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289 + + + F ++ Q+M F K A AG++ S H + Sbjct: 191 EWIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAAIAGIDVEKLSPHVL 250 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + GA + G + + YT A Sbjct: 251 RHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER 290 >gi|300812172|ref|ZP_07092616.1| tyrosine recombinase XerD [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496857|gb|EFK31935.1| tyrosine recombinase XerD [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 301 Score = 146 bits (368), Expect = 5e-33, Method: Composition-based stats. Identities = 40/277 (14%), Positives = 100/277 (36%), Gaps = 24/277 (8%) Query: 71 LKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVE 124 L I++Y + S L+ N+ +++ + + + + + + Sbjct: 7 LAEQINDYLRYSQIERGLSPNTIAAYKQDLLEFLAFVKEEQMPAWPLEAVEIDAFLAKER 66 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 SS + ++++ ++W VRQ+ +A++P ++ PKR+ T+ ++ + Sbjct: 67 DLGKANSSISRLVSTLSRFYQWLVRQQLIALDPMSQIDAPKREKRMPLALTEAEVGKLLE 126 Query: 185 FWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPD 239 G + R E L +G+R S++ + + ++ K + + Sbjct: 127 QPDLTTDLGIRDRALVELLYATGMRVSEAVNLQLADVHADLQLIKVLGKGSKERLIPVSA 186 Query: 240 GFMKLLAMTPIGKETF-----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 + + ++ F+N+ ++ K +AG+ + + Sbjct: 187 LALDWIKRYLPVRDQQLLKRGKSSDYLFLNSRGGQLTRQAVWQKIKKYCQQAGIAKDVTP 246 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 H +R AT + GA + G + + YT Sbjct: 247 HTLRHSFATHLLEHGADLRVVQEILGHTDISTTQIYT 283 >gi|254437230|ref|ZP_05050724.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 307] gi|198252676|gb|EDY76990.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 307] Length = 397 Score = 146 bits (368), Expect = 5e-33, Method: Composition-based stats. Identities = 51/351 (14%), Positives = 101/351 (28%), Gaps = 20/351 (5%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPH-----ESTFIPAYMSALTGSTPKREYINSPR--- 65 G Y + G R R + A L G Sbjct: 34 RIMPSGVRTYQVQYLKGGRTRRAAIGRHGVLTAEQARAKAKDLLGKVAMGGNPVEEISIH 93 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSGVE 124 ++ +T+ L + + ++ ++ + I G F + K I + Sbjct: 94 RRASTVGALCDRFLEVHVLERCKPSTAAEYKRGLNIFIKPALGAFKVVDVKRKDIAAIHH 153 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 K TP A + L + +F A PK + + + Q Sbjct: 154 KMKETPYQANRVLGVLSKMFNLAEVWGLRPDGSNPCRHVPKYRELKREAFLSQSELQRLG 213 Query: 185 FW--------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 SE AF L+ +G R + ++L + KTG Sbjct: 214 ATLAACELDGSESPYIVAAFRLLILTGCRLGEIQTLKWEYLTAKRMELPDTKTGARRIPL 273 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSAT 295 L A+ + + + + + T ++ +AG+ + H +R A+ Sbjct: 274 PKAARDVLAALPRVVGNPYVVCGAVEGRHITDLQHPWRRVRERAGLPHTRIHDLRHTYAS 333 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADR--IRLGIKNSRRISSVVD 344 + +G + G + Y AD ++ +N+ + S + Sbjct: 334 NAVSSGMPIQMVGKLLGHTQIQTTMRYAHLADDPVLKAAEENASSLQSALG 384 >gi|251796343|ref|YP_003011074.1| tyrosine recombinase XerD [Paenibacillus sp. JDR-2] gi|247543969|gb|ACT00988.1| tyrosine recombinase XerD [Paenibacillus sp. JDR-2] Length = 296 Score = 146 bits (368), Expect = 5e-33, Method: Composition-based stats. Identities = 40/269 (14%), Positives = 86/269 (31%), Gaps = 24/269 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYR---KITTKHIRSGVESRKHTPS---SAIQFLT 138 +L+ ++ S+ ++ + H+ + K + + + + Sbjct: 16 RALSSSTLESYGRDLQGLLDYLEQQSIANVADVHRHHLSHYLLRLKESGRKTSTVSRHIA 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194 S+R F + Y+ +NP + +E PK++ + + E+ G + + Sbjct: 76 SIRAFFHYLAVNGYIQLNPAIYIESPKQEKKEPSVLSMENAGLLLETPQPVTAAGKRDKA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KTGTIITVELPDGFMKLLAMTPIGKE 253 E L +G+R S+ V + + + I+ + L Sbjct: 136 MLELLYATGIRVSELISLNVDSVNSQLNIIRCVGSGMKERIIPFGRMAAAALDDYLQNGR 195 Query: 254 TF-----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300 F+N +M F K A +AG+ + H +R A + Sbjct: 196 AELLRQSEDEPALFLNQLGTRMTRQGFWKMVKKYAKEAGISEEITPHTLRHSFAAHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329 GA + G + + YTK + Sbjct: 256 GADLRAVQELLGHADISTTQRYTKVSKVK 284 >gi|312110344|ref|YP_003988660.1| tyrosine recombinase XerD [Geobacillus sp. Y4.1MC1] gi|311215445|gb|ADP74049.1| tyrosine recombinase XerD [Geobacillus sp. Y4.1MC1] Length = 299 Score = 146 bits (367), Expect = 6e-33, Method: Composition-based stats. Identities = 37/271 (13%), Positives = 92/271 (33%), Gaps = 26/271 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDF-------DYRKITTKHIRSGVESRKHTPSSAIQFL 137 +LA N+ +S+E + D ++ ++ + +P + + + Sbjct: 17 RNLAKNTIVSYERDLKKYAHYLRHVEQIQSWNDVSRLHIMQFLKFLKEKGSSPKTIARHI 76 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPR 193 S+R ++ +R++ +P + +E P+ + + + E+++ + + + Sbjct: 77 ASIRSFHQFLLREKIADQDPSVHIESPQMERTLPKVLSLEEVEALLEAPKTNTPIGIRDK 136 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252 E L +G+R S+ + + + ++ V + + L Sbjct: 137 AMIELLYATGMRVSELVNLNLSDVHLTMGFVRCYGKGNKERIVPIGSMALDALKAYLETA 196 Query: 253 ETF------------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298 F+N+ ++ F K A +A + K + H +R AT Sbjct: 197 RPKLINPKKRATDALFLNHYGDRLTRQGFWKILKKLAKEANIEKELTPHTLRHSFATHLL 256 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRI 329 + GA + G + + YT Sbjct: 257 ENGADLRAVQELLGHADISTTQIYTHVTKTR 287 >gi|89099048|ref|ZP_01171927.1| tyrosine recombinase [Bacillus sp. NRRL B-14911] gi|89086178|gb|EAR65300.1| tyrosine recombinase [Bacillus sp. NRRL B-14911] Length = 297 Score = 146 bits (367), Expect = 6e-33, Method: Composition-based stats. Identities = 41/270 (15%), Positives = 97/270 (35%), Gaps = 25/270 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRKHTPSSAI---QFL 137 LA N+ +S+E ++ G ++ HI ++ K SA + + Sbjct: 16 KGLANNTIVSYERDLKNYLKFIVKSEGLASLNEVQRVHIVQFLKKLKEQGKSAKTLARHI 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPR 193 S+R ++ +R++ +P + +E P+++ + + +++ S+ S + + Sbjct: 76 ASIRAFHQFLLREKVCENDPSVHIESPQQERSLPKVLSMAEVETLLESPSDSSHYSLRDK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252 E L +G+R S+ + + + ++ + + + + + Sbjct: 136 AMLELLYATGIRVSELIGLQIGDVHLTMGFVRCIGKGNKERIIPIGKTASEAIERYLLHG 195 Query: 253 ETFFI-----------NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 F+ N+ +++ F K A AG+ K + H +R AT + Sbjct: 196 RPNFVSKSRRDDTLFLNHHGRQLTRQGFWKILKKLAGDAGIEKELTPHTLRHSFATHLLE 255 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRI 329 GA + G + + YT Sbjct: 256 NGADLRAVQEMLGHADISTTQIYTHVTKTR 285 >gi|295399051|ref|ZP_06809033.1| tyrosine recombinase XerD [Geobacillus thermoglucosidasius C56-YS93] gi|294978517|gb|EFG54113.1| tyrosine recombinase XerD [Geobacillus thermoglucosidasius C56-YS93] Length = 299 Score = 146 bits (367), Expect = 6e-33, Method: Composition-based stats. Identities = 37/271 (13%), Positives = 92/271 (33%), Gaps = 26/271 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDF-------DYRKITTKHIRSGVESRKHTPSSAIQFL 137 +LA N+ +S+E + D ++ ++ + +P + + + Sbjct: 17 RNLAKNTIVSYERDLKKYAHYLRHVEQIQSWNDVSRLHIMQFLKFLKEKGSSPKTIARHI 76 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPR 193 S+R ++ +R++ +P + +E P+ + + + E+++ + + + Sbjct: 77 ASIRSFHQFLLREKIADQDPSVHIESPQMERTLPKVLSLEEVEALLEAPKTNTPIGIRDK 136 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252 E L +G+R S+ + + + ++ V + + L Sbjct: 137 AMIELLYATGMRVSELVNLNLSDVHLTMGFVRCYGKGNKERIVPVGSMALDALKAYLETA 196 Query: 253 ETF------------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298 F+N+ ++ F K A +A + K + H +R AT Sbjct: 197 RPKLINPKKRTTDALFLNHYGDRLTRQGFWKILKKLAKEANIEKELTPHTLRHSFATHLL 256 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRI 329 + GA + G + + YT Sbjct: 257 ENGADLRAVQELLGHADISTTQIYTHVTKTR 287 >gi|294634844|ref|ZP_06713366.1| tyrosine recombinase XerD [Edwardsiella tarda ATCC 23685] gi|291091717|gb|EFE24278.1| tyrosine recombinase XerD [Edwardsiella tarda ATCC 23685] Length = 299 Score = 146 bits (367), Expect = 6e-33, Method: Composition-based stats. Identities = 45/281 (16%), Positives = 95/281 (33%), Gaps = 24/281 (8%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT--TKHIRSGVESR--- 126 LI ++ + +LA N+ S+ + D +T +++ R Sbjct: 7 ALIEQFLDALWLEKNLAENTLASYRQDLRTLAEWLAYHDLSLLTASPGDLQNFFAQRVDG 66 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + SS+ + L+++R +++ R+ +P + PK + ++ + Sbjct: 67 GYKASSSARLLSALRRCYQYLYRETLRTDDPSAQLAAPKLPQRLPKDLSEAQVDALLQAP 126 Query: 187 SEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 + + + E L +GLR S+ G + + ++ V L + Sbjct: 127 AIDNPLELRDKAMLELLYATGLRVSELVGLGQEDVSLRQGVVRVIGKGNKERLVPLGEEA 186 Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 + + + F +N ++M F K A AG++ S H Sbjct: 187 IYWIEYYLEYGRPWLVNGQTVAALFPSNRARQMTRQTFWHRIKHYAVLAGIDTQRLSPHV 246 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R AT + GA + G + + YT A Sbjct: 247 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 287 >gi|297205885|ref|ZP_06923280.1| tyrosine recombinase XerD [Lactobacillus jensenii JV-V16] gi|297149011|gb|EFH29309.1| tyrosine recombinase XerD [Lactobacillus jensenii JV-V16] Length = 300 Score = 146 bits (367), Expect = 7e-33, Method: Composition-based stats. Identities = 42/263 (15%), Positives = 95/263 (36%), Gaps = 24/263 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR-----SGVESRKHTPSSAIQFLTS 139 L+ N+ S++ +Q I + + S+ + +T+ Sbjct: 20 RGLSKNTVDSYQLDLNQFIEYLDKEKITDWPEDPLIIDSYLAKQRDEGKKTSTISRGITT 79 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLA 195 +R +++ +RQ + ++P + ++ PK++ ++++++Q + G + R Sbjct: 80 LRRFYRYLLRQHILVVDPLIQIDTPKQEKRLPLALSQKEVEQLLAQPDIKTTTGLRDRAI 139 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIG--- 251 E L +G+R S+ L ++ I+ K V + D + L Sbjct: 140 LELLYATGMRVSELINLKEADLHTDLKIIRVLGKGSKERLVPVTDFALNWLDKYLKNVRD 199 Query: 252 ---------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 + F+NN ++ K + A ++K + H +R AT + Sbjct: 200 PALLKKGVACDFLFLNNRAGQLTRQAVWQSIKKYSKLAKIDKDITPHTLRHTFATHLLEN 259 Query: 301 GATAHELMATYGWKTVDQAETYT 323 GA + G + + YT Sbjct: 260 GADLRVVQEILGHSDISTTQIYT 282 >gi|227524454|ref|ZP_03954503.1| site-specific DNA tyrosine recombinase XerD [Lactobacillus hilgardii ATCC 8290] gi|227088413|gb|EEI23725.1| site-specific DNA tyrosine recombinase XerD [Lactobacillus hilgardii ATCC 8290] Length = 295 Score = 146 bits (367), Expect = 7e-33, Method: Composition-based stats. Identities = 44/276 (15%), Positives = 95/276 (34%), Gaps = 24/276 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHTPS 131 +++Y L+ N+ ++ + I D K+ I + +E+ + Sbjct: 5 LADYLHFLRVERGLSENTIKGYQQDLSEAIHFFQKTTKDISKVDQFLILNYLENLQQEKK 64 Query: 132 SAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187 S + ++S+R F++ + V +P L V+ PK+ + ++ + S + Sbjct: 65 SRNTVIRTVSSLRNFFRYLAQFGVVPDDPMLKVDSPKQSKTLPDVLSVSEVNKLLSMPNV 124 Query: 188 ---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMK 243 G + R E L +GLR S+ + L + K + + D + Sbjct: 125 SKPLGVRDRAMLETLYATGLRVSELVNLRLVDLHLPMKLIQTVGKGDRERIIPIGDVAID 184 Query: 244 LLAMT-----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 + + F+N +++ K AG+ + + H +R Sbjct: 185 WITQYLKTTRIDLLRKRTNTDFVFLNAHGRRLTRQAIWQMIKKYVKLAGIKRHVTPHTLR 244 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 AT + GA + G + + YT + Sbjct: 245 HSFATHLLENGADLRIVQELLGHADISTTQIYTHIS 280 >gi|187935362|ref|YP_001884797.1| phage integrase family protein [Clostridium botulinum B str. Eklund 17B] gi|187723515|gb|ACD24736.1| phage integrase family protein [Clostridium botulinum B str. Eklund 17B] Length = 385 Score = 146 bits (367), Expect = 7e-33, Method: Composition-based stats. Identities = 51/377 (13%), Positives = 120/377 (31%), Gaps = 52/377 (13%) Query: 15 RTRHGKIIYYFR--KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 R R K YYF K G+R ++ +T A + + + ++ Sbjct: 6 RKRGNKWYYYFDVAKSDGKRKKIERAGGNTKKEALEALRKALSEYDNVGTIITESNISVS 65 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 + + ++++S++ + G + +KIT+ ++ + + Sbjct: 66 DYFDYWFNEYVLINCKYSTQVSYKRLIKNHLKPSLGIYQLKKITSSRLQELINLKYRNGF 125 Query: 132 SAI---QFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGI------RPWTKEDMQQ 181 S + FK+ ++ NP V+ PK T+ I + T ED Sbjct: 126 SKNYLGNLYGVLSGAFKYAVYPSNFIKENPMTFVKMPKYNTKLINNPDDLKIITLEDYNN 185 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK---------------- 225 + GS + + +GLR ++ + +++ Sbjct: 186 ILKRFPYGSNMYIPLQISFNTGLRAAEVMSLTWDCIDFENQTLRVEKILYRNEFKKWVFG 245 Query: 226 -TQKTGTIITVELPDGFMKLLAMTP----------------IGKETFFINNDKQKMNATQ 268 + + T+++ + + LL + + + + + Sbjct: 246 SPKTHSSYRTIKIGNTLLSLLKKFHKDQKENKLRYGPFYVKHDYDFVCLKENGELLTTDS 305 Query: 269 FSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGA- 326 K + G++ H +R AT+ +AGA ++ G + Y+ Sbjct: 306 LKYLSKVVNYELGIDFKFHSLRHTHATMLLEAGANIKDIQQRLGHSKLATTMDVYSHVTK 365 Query: 327 ----DRIRLGIKNSRRI 339 D +RL + +++ Sbjct: 366 KMSQDSVRLFEEAIKKL 382 >gi|227510303|ref|ZP_03940352.1| site-specific DNA tyrosine recombinase, XerD [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227189955|gb|EEI70022.1| site-specific DNA tyrosine recombinase, XerD [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 295 Score = 146 bits (367), Expect = 7e-33, Method: Composition-based stats. Identities = 45/276 (16%), Positives = 96/276 (34%), Gaps = 24/276 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHTPS 131 +++Y L+ N+ S++ + I D K+ I + +E+ + Sbjct: 5 LADYLHFLRVERGLSENTIKSYQQDLSEAIHFFQKTTKDISKVDQFLILNYLENLQQEKK 64 Query: 132 SAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187 S + ++S+R F++ + V +P L V+ PK+ + ++ + S + Sbjct: 65 SRNTVIRTVSSLRNFFRYLAQFGVVPDDPMLKVDSPKQSKTLPDVLSVSEVNKLLSMPNV 124 Query: 188 ---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMK 243 G + R E L +GLR S+ + L + K + + D + Sbjct: 125 SKPLGVRDRAMLETLYATGLRVSELVNLRLVDLHLPMKLIQTVGKGDRERIIPIGDVAID 184 Query: 244 LLAMT-----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 + + F+N +++ K AG+ + + H +R Sbjct: 185 WITKYLKTTRIDLLRKRTNTDFVFLNAHGRRLTRQAIWQMIKKYVKLAGIKRHVTPHTLR 244 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 AT + GA + G + + YT + Sbjct: 245 HSFATHLLENGADLRIVQELLGHADISTTQIYTHIS 280 >gi|163791502|ref|ZP_02185908.1| integrase/recombinase XerD, putative [Carnobacterium sp. AT7] gi|159873225|gb|EDP67323.1| integrase/recombinase XerD, putative [Carnobacterium sp. AT7] Length = 296 Score = 145 bits (366), Expect = 8e-33, Method: Composition-based stats. Identities = 44/280 (15%), Positives = 101/280 (36%), Gaps = 25/280 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRK--- 127 + EY + L+ N+ S++ Q + + + I + S ++ K Sbjct: 5 VEEYLRFLTIERGLSKNTIESYKRDISQYLTFIEENKLTEWVQIDRYVVLSFLQKLKENQ 64 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + + I+ ++ +R ++ +++ +P L ++ PK+ + + + +++ + + Sbjct: 65 KSAGTIIRMISCLRQFHQFLKQEQLSLTDPMLHIDTPKKAQKLPKVLSIKEVDRLIETPN 124 Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFM 242 G + R E L +GLR S+ + L ++ K + L D + Sbjct: 125 TGETLGLRDRAMLEVLYATGLRVSELTELKLNDLHLSLGLIQTIGKGDKERILPLGDMAI 184 Query: 243 KLLAMTP-----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 + + F+N+ +K+ K KAG+ K + H + Sbjct: 185 EWIEKYRRYSRSKLEKEGHRSPYLFLNHHGRKLTRQGVWKNLKILVKKAGIEKEVTPHTL 244 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + GA + G + + YT + Sbjct: 245 RHSFATHLLENGADLRVVQELLGHSDISTTQIYTHITKQR 284 >gi|293394605|ref|ZP_06638899.1| tyrosine recombinase XerD [Serratia odorifera DSM 4582] gi|291422914|gb|EFE96149.1| tyrosine recombinase XerD [Serratia odorifera DSM 4582] Length = 299 Score = 145 bits (366), Expect = 8e-33, Method: Composition-based stats. Identities = 45/281 (16%), Positives = 92/281 (32%), Gaps = 24/281 (8%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESR 126 LI ++ + +LA N+ S+ ++ + + + Sbjct: 7 ALIEQFLDALWLERNLAENTLASYRLDLQALVNWLAQHNSDLLQAEALDLQAFLAERVEG 66 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + SS+ + L++MR LF++ R++ A +P + PK + ++ + Sbjct: 67 GYKASSSARLLSAMRRLFQYLYREKMRADDPTALLASPKLPQRLPKDLSEAQIDALLQAP 126 Query: 187 SEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 + + E L +GLR S+ + + ++ V L + Sbjct: 127 CVDQPLELRDKAMLEVLYATGLRVSELVGLSISDVSLRQGVVRVIGKGNKERLVPLGEEA 186 Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 + + + F + Q+M F K A AG++ S H Sbjct: 187 VYWIENYLEHGRPWLVNGQTIDVLFPSQRCQQMTRQTFWHRIKHYAILAGIDSERLSPHV 246 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R AT + GA + G + + YT A Sbjct: 247 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 287 >gi|237732945|ref|ZP_04563426.1| site-specific tyrosine recombinase xerD [Mollicutes bacterium D7] gi|229384014|gb|EEO34105.1| site-specific tyrosine recombinase xerD [Coprobacillus sp. D7] Length = 302 Score = 145 bits (366), Expect = 8e-33, Method: Composition-based stats. Identities = 51/282 (18%), Positives = 99/282 (35%), Gaps = 23/282 (8%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVES 125 +K +SEY++ L+ N+ S+ G+ I +HI ++ Sbjct: 3 IKDALSEYKQYLIVEKGLSKNTIYSYLRDLIAFSNFIGEEYEINQIENINKEHIHLYLKE 62 Query: 126 RKHTP--SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 T +S + L S+R+L+ + V++ V N S PKR + ++E+M + Sbjct: 63 LSKTNCTNSISRKLVSLRMLYIFLVKENIVKENLMSSFTLPKRDKKLPIILSQEEMIEIL 122 Query: 184 S----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELP 238 + S+ R E L +G+R S+ ++ L + F K + + Sbjct: 123 DGIIVCDAISSRNRCMVELLYATGMRISELLNLTLKDLNIKMGFIKVIGKGNKERMIPIG 182 Query: 239 DGFMKLLAMTPIGKETFF---------INNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287 ++L F N Q+++ +F + + S H Sbjct: 183 SYVGEILEQYINDYRAEFNIKNDSLLFFNKHGQRLSREEFYSILQTIVNSTSITKKVSPH 242 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + GA + G + YT +++ Sbjct: 243 TFRHTFATHLLENGADLRSIQELLGHSDISTTTIYTHISNQK 284 >gi|218194771|gb|EEC77198.1| hypothetical protein OsI_15703 [Oryza sativa Indica Group] Length = 752 Score = 145 bits (366), Expect = 8e-33, Method: Composition-based stats. Identities = 49/337 (14%), Positives = 101/337 (29%), Gaps = 38/337 (11%) Query: 32 RIRLPYPHE-------STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE-YRKSAH 83 R R+ F + + +P + I + + Sbjct: 415 RKRIEDTGSLIVGNTPEQFAEQIKAEFDVYKTVVQNQKLSLDQPA-IDAFIDALWLED-- 471 Query: 84 WGSLAVNSRISFESYFDQIIRKSGDFD------YRKITTKHIRSGVESRK--HTPSSAIQ 135 L+ N+ ++ + G H+++ +R +SA + Sbjct: 472 --GLSRNTLAAYRRDLVLYAQWLGQHASDTAGALDATAEHHLKAYFAARHAETRATSANR 529 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQ 191 LT +R F+WA+R+ +A +P + ++ ++ + + ++ G + Sbjct: 530 RLTVLRRYFQWALRERRIAADPTVRLQAARQPLRVPKTLSAAQVEALLQAPDTSTSLGLR 589 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLLAMT-- 248 R E + SGLR ++ H + ++ G V + + + Sbjct: 590 DRAMLELMYASGLRVTELVTLKTYHAGLSEGVLRVMGKGGKERLVPFGEVAAQWMQRYLD 649 Query: 249 --------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISA 298 + F+ M F + K A AG+ S H +R AT Sbjct: 650 EARADILAGQQTDDLFVTRRGAGMTRAMFWVVVKKHAQAAGITVPLSPHTLRHAFATHLL 709 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 + GA + G + YT A + Sbjct: 710 NHGADLRVVQLLLGHADISTTTIYTHVARERLKALHA 746 >gi|256851002|ref|ZP_05556391.1| tyrosine recombinase XerD [Lactobacillus jensenii 27-2-CHN] gi|260661214|ref|ZP_05862128.1| tyrosine recombinase XerD [Lactobacillus jensenii 115-3-CHN] gi|282932045|ref|ZP_06337503.1| tyrosine recombinase XerD [Lactobacillus jensenii 208-1] gi|256616064|gb|EEU21252.1| tyrosine recombinase XerD [Lactobacillus jensenii 27-2-CHN] gi|260548151|gb|EEX24127.1| tyrosine recombinase XerD [Lactobacillus jensenii 115-3-CHN] gi|281303812|gb|EFA95956.1| tyrosine recombinase XerD [Lactobacillus jensenii 208-1] Length = 300 Score = 145 bits (366), Expect = 8e-33, Method: Composition-based stats. Identities = 42/263 (15%), Positives = 95/263 (36%), Gaps = 24/263 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR-----SGVESRKHTPSSAIQFLTS 139 L+ N+ S++ +Q I + + S+ + +T+ Sbjct: 20 RGLSKNTVDSYQLDLNQFIEYLDKEKITDWPEDPLIIDSYLAKQRDEGKKTSTISRGITT 79 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLA 195 +R +++ +RQ + ++P + ++ PK++ ++++++Q + G + R Sbjct: 80 LRRFYRYLLRQHILVVDPLIQIDTPKQEKRLPLALSQKEVEQLLAQPDIKTTTGLRDRAI 139 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIG--- 251 E L +G+R S+ L ++ I+ K V + D + L Sbjct: 140 LELLYATGMRVSELINLKEADLHTDLKIIRVLGKGSKERLVPVTDFALSWLDKYLKNVRD 199 Query: 252 ---------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 + F+NN ++ K + A ++K + H +R AT + Sbjct: 200 PALLKKGVACDFLFLNNRAGQLTRQAVWQSIKKYSKLAKIDKDITPHTLRHTFATHLLEN 259 Query: 301 GATAHELMATYGWKTVDQAETYT 323 GA + G + + YT Sbjct: 260 GADLRVVQEILGHSDISTTQIYT 282 >gi|332140209|ref|YP_004425947.1| tyrosine recombinase [Alteromonas macleodii str. 'Deep ecotype'] gi|327550231|gb|AEA96949.1| tyrosine recombinase [Alteromonas macleodii str. 'Deep ecotype'] Length = 308 Score = 145 bits (366), Expect = 9e-33, Method: Composition-based stats. Identities = 46/286 (16%), Positives = 103/286 (36%), Gaps = 31/286 (10%) Query: 85 GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTP---SSAIQFLT 138 L+ +++ S+ + ++ S G D ++T+ ++ + R S + L+ Sbjct: 30 KGLSEHTQQSYRTDLSKLAVFSNNQGIKDIAVLSTEQLQDYLAYRHDKGLSTRSTQRALS 89 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194 ++R F + + ++ +P ++ PK +++ ++ + + R Sbjct: 90 AIRAFFVYLISKQIRVDSPVSALSNPKTPKALPASLSEQQVEDLLNAPQTDDPIECRDRS 149 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIG-- 251 E L +GLR S+ + + ++ V L + ++ L Sbjct: 150 MLEVLYATGLRVSELIGLTMDQISLQQGVVRVVGKGNKERLVPLGEEAIEWLLTYIKTAR 209 Query: 252 -------KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302 + +++ QKM F K A KAG+ + S H +R AT + GA Sbjct: 210 PILATKTSDFVYLSKRGQKMTRQTFWHRIKYYAVKAGIEQHLSPHTLRHAFATHLLNHGA 269 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 + G + + YT + R+ +++ S P Sbjct: 270 DLRVVQMLLGHSDLSTTQIYTHV---------ATERLQTLIHSHHP 306 >gi|229524404|ref|ZP_04413809.1| tyrosine recombinase XerD [Vibrio cholerae bv. albensis VL426] gi|229337985|gb|EEO03002.1| tyrosine recombinase XerD [Vibrio cholerae bv. albensis VL426] Length = 302 Score = 145 bits (366), Expect = 9e-33, Method: Composition-based stats. Identities = 45/280 (16%), Positives = 104/280 (37%), Gaps = 24/280 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR---K 127 L+ ++ + + LA N+ S+ + +++ + I+ ++ Sbjct: 11 LVEQFLDTMWFERGLAENTVTSYRNDLSKLLEWMAQNQYRLDFISFAGLQEYQSWLSEQN 70 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 + P+S + L+++R LF++ R++ A +P + PK T + ++ ++ S Sbjct: 71 YKPTSKARMLSAIRRLFQYLYREKVRADDPSALLISPKLPTRLPKDLSEAQVEALLSAPD 130 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM 242 + + E L +GLR ++ ++++ ++ G V + + + Sbjct: 131 PQSPLELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVMGKGGKERLVPMGENAI 190 Query: 243 KLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289 + + + F ++ Q+M F K A AG++ S H + Sbjct: 191 EWIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAGIDVEKLSPHVL 250 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + GA + G + + YT A Sbjct: 251 RHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER 290 >gi|167756958|ref|ZP_02429085.1| hypothetical protein CLORAM_02507 [Clostridium ramosum DSM 1402] gi|167703133|gb|EDS17712.1| hypothetical protein CLORAM_02507 [Clostridium ramosum DSM 1402] Length = 312 Score = 145 bits (366), Expect = 9e-33, Method: Composition-based stats. Identities = 51/282 (18%), Positives = 99/282 (35%), Gaps = 23/282 (8%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVES 125 +K +SEY++ L+ N+ S+ G+ I +HI ++ Sbjct: 13 IKDALSEYKQYLIVEKGLSKNTIYSYLRDLIAFSNFIGEEYEINQIENINKEHIHLYLKE 72 Query: 126 RKHTP--SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 T +S + L S+R+L+ + V++ V N S PKR + ++E+M + Sbjct: 73 LSKTNCTNSISRKLVSLRMLYIFLVKENIVKENLMSSFTLPKRDKKLPIVLSQEEMIEIL 132 Query: 184 S----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELP 238 + S+ R E L +G+R S+ ++ L + F K + + Sbjct: 133 DGIIVCDAISSRNRCMVELLYATGMRISELLNLTLKDLNIKMGFIKVIGKGNKERMIPIG 192 Query: 239 DGFMKLLAMTPIGKETFF---------INNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287 ++L F N Q+++ +F + + S H Sbjct: 193 SYVGEILEQYINDYRAEFNIKNDSLLFFNKHGQRLSREEFYSILQTIVNSTSITKKVSPH 252 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + GA + G + YT +++ Sbjct: 253 TFRHTFATHLLENGADLRSIQELLGHSDISTTTIYTHISNQK 294 >gi|307692332|ref|ZP_07634569.1| tyrosine recombinase XerD subunit [Ruminococcaceae bacterium D16] Length = 293 Score = 145 bits (366), Expect = 9e-33, Method: Composition-based stats. Identities = 44/277 (15%), Positives = 94/277 (33%), Gaps = 23/277 (8%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTPS 131 L EY + + N+ S+ Q D + ++ + + V+ Sbjct: 7 LFEEYLTTE--KKASANTVSSYLRDMHQFETAMAEQDLELTELAVQDVELYVDGLTRKGK 64 Query: 132 SAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----S 184 SA + + S++ + + + NP V K + + + T ++++ F Sbjct: 65 SAATVTRSIASIKSFYNCMIALGIMDRNPAKDVVAAKVERKLPQILTGKEVELFLEQPDC 124 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 +G + R E L +G+R S+ V L + + G + L ++ Sbjct: 125 SDLKGFRDRAMLELLYATGIRVSELIALDVDDLNLPAGVLHCESKGRERIIPLYHTAIRA 184 Query: 245 LAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKF 292 L+ F+N ++M+ F K KAG+ + + H +R Sbjct: 185 LSDYITQVRPQLVESPEETALFVNMSGERMSRQGFWKLIKHYQEKAGIQKDITPHTLRHS 244 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 A + GA + G + + Y++ + Sbjct: 245 FAAHLLENGADLRSIQEMLGHADISSTQIYSRLVSQK 281 >gi|238921200|ref|YP_002934715.1| tyrosine recombinase XerD, putative [Edwardsiella ictaluri 93-146] gi|238870769|gb|ACR70480.1| tyrosine recombinase XerD, putative [Edwardsiella ictaluri 93-146] Length = 299 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 45/281 (16%), Positives = 93/281 (33%), Gaps = 24/281 (8%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESR 126 LI ++ + +LA N+ S+ + D +T H + Sbjct: 7 ALIEQFLDALWLEKNLAENTLASYRQDLRTLAEWLACHDLTLLTAAHGDLQDFFAQRMDG 66 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + SS+ + L+++R +++ R+ +P + PK + ++ + Sbjct: 67 GYKASSSARLLSALRRCYQYLYRETLRGDDPSALLASPKLPQRLPKDLSEAQVDALLQAP 126 Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 S + + + E L +GLR S+ + + ++ V L + Sbjct: 127 SIDTPLELRDKAMLELLYATGLRVSELVGLAQEDISLRQGVVRVIGKGNKERLVPLGEEA 186 Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 + + + F +N ++M F K A AG++ S H Sbjct: 187 IYWIEYYLEYGRPWLVNGQTVAALFPSNRARQMTRQTFWHRIKHYAVLAGIDGDRLSPHV 246 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R AT + GA + G + + YT A Sbjct: 247 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 287 >gi|46143544|ref|ZP_00135036.2| COG4974: Site-specific recombinase XerD [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126209006|ref|YP_001054231.1| site-specific tyrosine recombinase XerD [Actinobacillus pleuropneumoniae L20] gi|303253035|ref|ZP_07339187.1| site-specific tyrosine recombinase XerD [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307246462|ref|ZP_07528535.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307248587|ref|ZP_07530602.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307255445|ref|ZP_07537252.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307257614|ref|ZP_07539374.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307259897|ref|ZP_07541611.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307262027|ref|ZP_07543682.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|126097798|gb|ABN74626.1| tyrosine recombinase XerD [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|302648099|gb|EFL78303.1| site-specific tyrosine recombinase XerD [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306852666|gb|EFM84898.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306854937|gb|EFM87125.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306861629|gb|EFM93616.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306863917|gb|EFM95840.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306866067|gb|EFM97941.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306868310|gb|EFN00132.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 297 Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats. Identities = 42/284 (14%), Positives = 97/284 (34%), Gaps = 24/284 (8%) Query: 71 LKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVES 125 L +I ++ + L+ N+ ++ + + G Sbjct: 4 LDPIIEQFLDTLWQEHGLSENTSAAYRLDLESFSEWLPTPKAFLTLDHFDLQAFLGGRLE 63 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + +S+ + L+ +R F++ + Y +P L++ P++ + ++E + Sbjct: 64 LGYKATSSARMLSCLRKFFRFLYTENYRQDDPTLTLTSPRKPAHLPKSLSEEQVMDLLDS 123 Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTII------- 233 + + + E L +GLR S+ + +L ++ Sbjct: 124 PNTLDPIELRDKAMLELLYATGLRVSELVSLSIDNLSLRQGVVRVVGKGDKERLVPIGEE 183 Query: 234 ---TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287 ++ + + + + + + F + Q+M F K A AG++ S H Sbjct: 184 AGYWIQEFFRYGRAILLNNLQSDVVFPSRRGQQMTRQTFWHRIKHYAVLAGIDSEKLSPH 243 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +R AT + GA + G + + YT A + RL Sbjct: 244 VLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVA-KARL 286 >gi|153830656|ref|ZP_01983323.1| tyrosine recombinase XerD [Vibrio cholerae 623-39] gi|148873865|gb|EDL72000.1| tyrosine recombinase XerD [Vibrio cholerae 623-39] Length = 302 Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats. Identities = 45/280 (16%), Positives = 105/280 (37%), Gaps = 24/280 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR---K 127 L+ ++ + + LA N+ +S+ + +++ + I+ ++ Sbjct: 11 LVEQFLDTMWFERGLAENTVVSYRNDLSKLLEWMAQNQYRLDFISFAGLQEYQSWLSEQN 70 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 + P+S + L+++R LF++ R++ A +P + PK T + ++ ++ S Sbjct: 71 YKPTSKARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPTRLPKDLSEAQVEALLSAPD 130 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM 242 + + E L +GLR ++ ++++ ++ G V + + + Sbjct: 131 PQSPLELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVMGKGGKERLVPMGENAI 190 Query: 243 KLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289 + + + F ++ Q+M F K A AG++ S H + Sbjct: 191 EWIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAGIDVEKLSPHVL 250 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + GA + G + + YT A Sbjct: 251 RHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER 290 >gi|307250820|ref|ZP_07532749.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306857179|gb|EFM89306.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 297 Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats. Identities = 41/284 (14%), Positives = 96/284 (33%), Gaps = 24/284 (8%) Query: 71 LKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVES 125 L +I ++ + L+ N+ ++ + + Sbjct: 4 LDPIIEQFLDTLWQEHGLSENTSAAYRLDLESFSEWLPTPKAFLTLDHFDLQAFLGERLE 63 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + +S+ + L+ +R F++ + Y +P L++ P++ + ++E + Sbjct: 64 LGYKATSSARMLSCLRKFFRFLYTENYRQDDPTLTLTSPRKPAHLPKSLSEEQVMDLLDS 123 Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTII------- 233 + + + E L +GLR S+ + +L ++ Sbjct: 124 PNTLDPIELRDKAMLELLYATGLRVSELVSLSIDNLSLRQGVVRVVGKGDKERLVPIGEE 183 Query: 234 ---TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287 ++ + + + + + + F + Q+M F K A AG++ S H Sbjct: 184 AGYWIQEFFRYGRAILLNNLQSDVVFPSRRGQQMTRQTFWHRIKHYAVLAGIDSEKLSPH 243 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +R AT + GA + G + + YT A + RL Sbjct: 244 VLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVA-KARL 286 >gi|150020077|ref|YP_001305431.1| phage integrase family protein [Thermosipho melanesiensis BI429] gi|149792598|gb|ABR30046.1| phage integrase family protein [Thermosipho melanesiensis BI429] Length = 282 Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats. Identities = 43/279 (15%), Positives = 104/279 (37%), Gaps = 21/279 (7%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--------H 128 +Y + N+ ++ + + + ++I K I + +++ Sbjct: 9 DYLAHV--RRHSENTLKAYLKDVRKFLEYI-NKPIKEIERKDIETFLKALSKGEITENSP 65 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 ++ ++++S+ F + ++ NP ++ P+ + + T+E++++ + E Sbjct: 66 RETTISRYISSLNSFFNYLELSGTISNNPMERIKHPRLRRKIPDFLTEEEIKKLIDVFDE 125 Query: 189 GS--QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKL 244 + + +LA L Y+GLR S+ C + ++ K V LPD + L Sbjct: 126 ETEMKKKLAISLLYYAGLRISELCNLRTTDISFIPPFLRIEMGKGRKDRLVPLPDKVLPL 185 Query: 245 LAMTP--IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 L + + N+ + ++ + W K +A + K H +R AT Sbjct: 186 LQKYLELKNPKIYVFENEAKHVHPSTVFRWLKDGVKRAKIKKQVHPHTLRHSYATHLIRK 245 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 G + G + Y AD+ + +++ Sbjct: 246 GVNIKVVQELLGHTNLSTTSIYLHVADQEK--FDAVKKL 282 >gi|325839425|ref|ZP_08166864.1| tyrosine recombinase XerD [Turicibacter sp. HGF1] gi|325490545|gb|EGC92861.1| tyrosine recombinase XerD [Turicibacter sp. HGF1] Length = 305 Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats. Identities = 45/276 (16%), Positives = 108/276 (39%), Gaps = 23/276 (8%) Query: 74 LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFD---YRKITTKHIRSGVESRKHT 129 ++++ L++N++IS+E + + + +I +H++ + + Sbjct: 8 YLNDFLAHLLIDRGLSLNTKISYERDLTEYLLYLQNQSVHQLDEIRREHVQQYLITLYER 67 Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 S + L+++R ++ + ++ NPC +E PK K + ++++ S + Sbjct: 68 NLNTKSVARHLSAIRSFHQYLMIEKISNTNPCELIESPKLKRHLPEILSIDEVEHLLSSF 127 Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 + + + + E + SGLR S+ + + + ++ ++ V + + Sbjct: 128 NTKTVNDIRNKAMVELMYASGLRVSELLQLKLDDVHLSMMFVRCVGKGDKERIVPIGEVA 187 Query: 242 MKLLAMT---------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 +LL + + F+N + M F K +A +AG+ K S H +R Sbjct: 188 TELLQLYLDTARPNLLKKSNDWLFLNRFGEVMTRQGFWKILKKQAKEAGIEKEISPHKLR 247 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 AT + G + G + + YT + Sbjct: 248 HSFATHLIENGVDLRLVQEMLGHSDISTTQIYTHIS 283 >gi|270264904|ref|ZP_06193168.1| DNA integration/recombination/invertion protein [Serratia odorifera 4Rx13] gi|270041202|gb|EFA14302.1| DNA integration/recombination/invertion protein [Serratia odorifera 4Rx13] Length = 299 Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats. Identities = 44/282 (15%), Positives = 93/282 (32%), Gaps = 24/282 (8%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVES 125 LI ++ + +LA N+ S+ + + + + + + Sbjct: 6 SALIEQFLDALWLERNLAENTLASYRLDLQALSAWLNHQNTSLLQAQALDLQAFLAERVA 65 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + +S+ + L++MR LF++ R++ +P + PK + ++ + Sbjct: 66 GGYKATSSARLLSAMRRLFQYLYREKLREDDPTALLASPKLPQRLPKDLSEAQVDALLQA 125 Query: 186 WSEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDG 240 + + E L +GLR S+ + + ++ V L + Sbjct: 126 PCVDQPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKERLVPLGEE 185 Query: 241 FMKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAH 287 + + + +N N Q+M F K A AG++ S H Sbjct: 186 AVYWIENYLEHGRPWMVNGQALDVLFPSNRCQQMTRQTFWHRIKHYAILAGIDSERLSPH 245 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R AT + GA + G + + YT A Sbjct: 246 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 287 >gi|167756895|ref|ZP_02429022.1| hypothetical protein CLORAM_02444 [Clostridium ramosum DSM 1402] gi|167703070|gb|EDS17649.1| hypothetical protein CLORAM_02444 [Clostridium ramosum DSM 1402] Length = 302 Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats. Identities = 43/284 (15%), Positives = 87/284 (30%), Gaps = 25/284 (8%) Query: 68 PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGV 123 TTL +Y + A + S++ D + + ++ +R + Sbjct: 2 KTTLDKYFRQYLDYLQYQRHYADKTIESYKRQIDHFKQFLIEESIDDYNDVSYAMLRGYL 61 Query: 124 ESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM- 179 + ++ L+++R F + +++E + NP L +E K E++ Sbjct: 62 TKLYEKNLSKTTINHKLSALRSFFNYLLKEELINDNPFLLIESQKVAKRNPDFLFPEEIL 121 Query: 180 ---QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITV 235 ++ G + + E + SGLRCS+ + ++ N K V Sbjct: 122 GLLDSIETKDDLGIRNKAMMELMYASGLRCSEVVNLQLSNIDFNQMVLFIHGKGNKDRYV 181 Query: 236 ELPDGFMKLLAMTPIG-----------KETFFINNDKQKMNATQFSIWFKAKATKAG--V 282 D + L F+N + Sbjct: 182 PFHDYAGEWLIKYIQEARENLMIKNEGHNFVFVNKFGNPLTNRGVENIVDRIMRLYDSTK 241 Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 H +R AT +AGA + G + + + YT + Sbjct: 242 KIHPHTIRHSFATHLLNAGADIRTVQELLGHENLSTTQIYTHIS 285 >gi|109900015|ref|YP_663270.1| tyrosine recombinase XerD [Pseudoalteromonas atlantica T6c] gi|109702296|gb|ABG42216.1| tyrosine recombinase XerD [Pseudoalteromonas atlantica T6c] Length = 301 Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats. Identities = 46/300 (15%), Positives = 98/300 (32%), Gaps = 33/300 (11%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESR- 126 +I ++ + L+ N+ ++ S + + I T+ I + R Sbjct: 9 EIIEQFLDTIWLEKGLSENTLDAYRSDLTKFSDFLRAQSSVVNLLDIQTEDINQYMAERF 68 Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + S+ + L+S+R + + +P ++ PK + +++ + + Sbjct: 69 DNGLSERSSARCLSSLRRFSGYMLAHGLREDDPVSRMQNPKLSKPLPKTLSEQQVDDLLN 128 Query: 185 FWSEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPD 239 + + E L +GLR ++ V L + ++ V L + Sbjct: 129 APQTDDPIQLRDKAMLEVLYATGLRVTELVTLRVGQLSISQGVVRVTGKGNKERLVPLGE 188 Query: 240 GFMKLLAMTP---------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHG 288 + L + F +N M F K AT+A + + S H Sbjct: 189 EALDWLTTYMKEARGALLRNESDVLFPSNRGTIMTRQTFWHRIKFHATQANITSDLSPHT 248 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 +R AT + GA + G + + YT + R+ +V + P Sbjct: 249 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHV---------ATARLQELVAAHHP 299 >gi|297374655|emb|CBL42942.1| phage integrase family protein [Candidatus Magnetobacterium bavaricum] Length = 324 Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats. Identities = 51/326 (15%), Positives = 113/326 (34%), Gaps = 14/326 (4%) Query: 17 RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76 + ++Y L + ++ AL K + + R +L+ + Sbjct: 5 KRTNGVWYVEVKRNVVRSLQTRDDREARQRFV-ALQREAVKGKLVVLDRTPTMSLQEFVK 63 Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHI---RSGVESRKHTPSS 132 Y + + A + E ++ G + I K++ + S K+ P++ Sbjct: 64 AYLEWCQ-SNRAGRTCERAELALRKLTEVVGKNKLIADIKKKNMDDYVAYCTSIKNKPTT 122 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 + ++ F WAV +EY+ NP ++ K + R ++ +Q + + Sbjct: 123 INIEIRHIKAAFSWAVEREYLKTNPFAGYKQLKYQNTIPRFLSENQIQDVYTAIGDNKTY 182 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252 RL F +++G R ++ ++ + + KT + G +L+ G Sbjct: 183 RLIFALYIHTGARRNEIQNIKWSDIKPDGIIFEKTKTYRSRKIPTSKGLKAILSEYDRGI 242 Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATY 311 F + S K KAG+ + H +R A++ AG + Sbjct: 243 GQIFNI------TPSHISHVMKDYFKKAGIGHFKLHDLRHTFASLLVQAGIDLRTIQVLL 296 Query: 312 GWKTVDQAETYTKGA-DRIRLGIKNS 336 G + Y + ++++ I + Sbjct: 297 GHTSYSTTLIYAHLSQNQLQDAIDHI 322 >gi|117620205|ref|YP_857765.1| tyrosine recombinase XerD [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561612|gb|ABK38560.1| tyrosine recombinase XerD [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 299 Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats. Identities = 45/283 (15%), Positives = 99/283 (34%), Gaps = 23/283 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITT-KHIRSGVESRK 127 LI + + L+ N+ S+ + ++ G + +H + ++ Sbjct: 9 LIEPFLDALWLERGLSDNTVSSYRTDLEKFALWLDEQGGSLLLAGLDDIQHYLAWRVDQQ 68 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 SS +FL+++R +++ R++ + +P + +E PK + ++ +++ Sbjct: 69 FAASSTARFLSALRRFYQYLNREKLRSDDPTVLLEGPKLPKKLPSDLSEAEVEALLQAPL 128 Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 + + E L +GLR S+ +H+ ++ V + + + Sbjct: 129 VDEPLELRDKAMLELLYATGLRVSELVGLTAEHVSLRQGLVRVVGKGNKERLVPMGEEAV 188 Query: 243 KLLAMTPIGKET----------FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290 L T F + + M F K A +AG+ S H +R Sbjct: 189 HWLERYYREARTLLLGGTSSDVVFPSKQARMMTRQTFWHRIKLYAQRAGIQGELSPHTLR 248 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 AT + GA + G + + YT A+ + Sbjct: 249 HAFATHLLNHGADLRVVQMLLGHADLSTTQIYTHVANERLKAL 291 >gi|239996020|ref|ZP_04716544.1| tyrosine recombinase [Alteromonas macleodii ATCC 27126] Length = 308 Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 47/286 (16%), Positives = 102/286 (35%), Gaps = 31/286 (10%) Query: 85 GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTP---SSAIQFLT 138 L+ +++ S+ + ++ S G D +TT+ ++ + R S + L+ Sbjct: 30 KGLSDHTQQSYRTDLTKLAIFSNNQGVKDIAVLTTEQLQDYLAYRHDKGLSTRSTQRALS 89 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194 ++R F + + ++ +P ++ PK +++ ++ + + + Sbjct: 90 AIRAFFVFLISKQVRVDSPVSALSNPKTPKALPSSLSEQQVEDLLNAPLTDDPIECRDKS 149 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKE 253 E L +GLR S+ + + ++ V L + ++ L Sbjct: 150 MLEVLYATGLRVSELIGLTMDQISLQQGVVRVVGKGNKERLVPLGEDAIEWLLTYIKTAR 209 Query: 254 TF---------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302 F++ QKM F K A KAG+ + S H +R AT + GA Sbjct: 210 PILASKASDVVFLSKRGQKMTRQTFWHRIKYYAVKAGIEQHLSPHTLRHAFATHLLNHGA 269 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 + G + + YT + R+ +++ S P Sbjct: 270 DLRVVQMLLGHSDLSTTQIYTHV---------ATERLQTLIHSHHP 306 >gi|254492686|ref|ZP_05105857.1| tyrosine recombinase XerD [Methylophaga thiooxidans DMS010] gi|224462207|gb|EEF78485.1| tyrosine recombinase XerD [Methylophaga thiooxydans DMS010] Length = 303 Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 48/290 (16%), Positives = 93/290 (32%), Gaps = 23/290 (7%) Query: 63 SPRKKPTTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHI 119 S + +PT+ + + S L+ N+ ++ D D T I Sbjct: 2 SEQDEPTSTSRYLQPFLDSLWLEAGLSQNTVEAYRRDLLAFAAWLAKLDVDLAAATQHDI 61 Query: 120 RSGVESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + R + L+++R +++ +R++ +P +E P+ T+ Sbjct: 62 QRYQSQRMREGRKVRSEARLLSTLRRFYRYLLREDIRDSDPTAQLESPRLGKPLPDSLTE 121 Query: 177 EDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GT 231 +D++ + G + R E L SGLR S+ + + ++ Sbjct: 122 QDVEDLLAQPDITDLLGLRDRTMLELLYASGLRVSELVGLKQEQINMRQGLVRCIGKGNK 181 Query: 232 IITVELPDGFMKLLAMTPIGKET----------FFINNDKQKMNATQFSIWFKAKATKAG 281 V L + + L F + M F K A +A Sbjct: 182 ERLVPLGEVALDWLQQYFYESRPGLLNGKVTDDVFPTRRGKAMTRQAFWYIIKRYAKQAQ 241 Query: 282 VNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + K+ H +R AT + GA + G + + YT A Sbjct: 242 IQKTLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKER 291 >gi|89091996|ref|ZP_01164951.1| tyrosine recombinase XerD [Oceanospirillum sp. MED92] gi|89083731|gb|EAR62948.1| tyrosine recombinase XerD [Oceanospirillum sp. MED92] Length = 306 Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 49/281 (17%), Positives = 98/281 (34%), Gaps = 23/281 (8%) Query: 72 KWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVES 125 LI Y + L+ N+ S+ Q D ++ + + Sbjct: 14 AQLIDIYLDAIWMEKGLSDNTLSSYRRDLVQFSVWLTDQGVIMKRCCRVDIQKYLAWRVK 73 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + SS + L+ +R +++ +R+E ++ +P L ++ PK+ + T+ +++ Sbjct: 74 ERRKASSTSRMLSCLRGFYRYLLREEMISEDPLLLIDSPKKGRPLPKTLTESEVELLLDA 133 Query: 186 WSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDG 240 + R E L +GLR S+ + + N ++ G V L + Sbjct: 134 PDLSDPVQYRDRAMLEVLYATGLRVSELVALRLHEINLNQGVLRVMGKGGKERLVPLGEE 193 Query: 241 FMKLLAMTPIGKETFFINNDK----------QKMNATQFSIWFKAKATKAGVNKS--AHG 288 + + +D Q+M F K A AG++K+ H Sbjct: 194 AIHWVMRYMGEVRPALFTHDVSDVLFPSRRGQQMTRQTFWHRIKRHALTAGIDKTLSPHV 253 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R AT + GA + G + + YT A + Sbjct: 254 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQQR 294 >gi|237734604|ref|ZP_04565085.1| tyrosine recombinase xerC [Mollicutes bacterium D7] gi|229382424|gb|EEO32515.1| tyrosine recombinase xerC [Coprobacillus sp. D7] Length = 304 Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 43/284 (15%), Positives = 87/284 (30%), Gaps = 25/284 (8%) Query: 68 PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGV 123 TTL +Y + A + S++ D + + ++ +R + Sbjct: 4 KTTLDNYFRQYLDYLQYQRHYADKTIESYKRQIDHFKQFLIEESIDDYNDVSYAMLRGYL 63 Query: 124 ESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM- 179 + ++ L+++R F + +++E + NP L +E K E++ Sbjct: 64 TKLYEKNLSKTTINHKLSALRSFFNYLLKEELINDNPFLLIESQKVAKRNPDFLFPEEIL 123 Query: 180 ---QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITV 235 ++ G + + E + SGLRCS+ + ++ N K V Sbjct: 124 GLLDSIETKDDLGIRNKAMMELMYASGLRCSEVVNLQLSNIDFNQMVLFIHGKGNKDRYV 183 Query: 236 ELPDGFMKLLAMTPIG-----------KETFFINNDKQKMNATQFSIWFKAKATKAG--V 282 D + L F+N + Sbjct: 184 PFHDYAGEWLIKYIQEARENLMIKNEGHNFVFVNKFGNPLTNRGVENIVDRIMRLYDSTK 243 Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 H +R AT +AGA + G + + + YT + Sbjct: 244 KIHPHTIRHSFATHLLNAGADIRTVQELLGHENLSTTQIYTHIS 287 >gi|293376592|ref|ZP_06622820.1| tyrosine recombinase XerD [Turicibacter sanguinis PC909] gi|292644818|gb|EFF62900.1| tyrosine recombinase XerD [Turicibacter sanguinis PC909] Length = 305 Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 45/276 (16%), Positives = 108/276 (39%), Gaps = 23/276 (8%) Query: 74 LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFD---YRKITTKHIRSGVESRKHT 129 ++++ L++N++IS+E + + + +I +H++ + + Sbjct: 8 YLNDFLAHLLIDRGLSLNTKISYERDLTEYLLYLQNQSVHQLDEIRREHVQQYLITLYER 67 Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 S + L+++R ++ + ++ NPC +E PK K + ++++ S + Sbjct: 68 NLNTKSVARHLSAIRSFHQYLMIEKISNTNPCELIESPKLKRHLPEILSIDEVEHLLSSF 127 Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 + + + + E + SGLR S+ + + + ++ ++ V + + Sbjct: 128 NTKTVNDIRNKAMVELMYASGLRVSELLQLKLDDVHLSMMFVRCVGKGDKERIVPIGEVA 187 Query: 242 MKLLAMT---------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 +LL + + F+N + M F K +A +AG+ K S H +R Sbjct: 188 TELLQLYLDTARPKLLKKSNDWLFLNRFGEVMTRQGFWKILKKQAKEAGIEKEISPHKLR 247 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 AT + G + G + + YT + Sbjct: 248 HSFATHLIENGVDLRLVQEMLGHSDISTTQIYTHIS 283 >gi|313123528|ref|YP_004033787.1| tyrosine recombinase xerd subunit [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280091|gb|ADQ60810.1| Tyrosine recombinase XerD subunit [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 301 Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 40/277 (14%), Positives = 99/277 (35%), Gaps = 24/277 (8%) Query: 71 LKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVE 124 L I++Y + S L+ N+ ++ + + + + + + Sbjct: 7 LAEQINDYLRYSQIERGLSPNTIAAYHQDLLEFLAFVKEEQMPAWPLEAVEIDAFLAKER 66 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 SS + ++++ ++W VRQ+ +A++P ++ PKR+ T+ ++ + Sbjct: 67 DLGKANSSISRLVSTLSRFYQWLVRQQLIALDPMSQIDAPKREKRMPLALTEAEVGKLLE 126 Query: 185 FWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPD 239 G + R E L +G+R S++ + + ++ K + + Sbjct: 127 QPDLTTDLGIRDRALVELLYATGMRVSEAVNLKLADVHADLQLIKVLGKGSKERLIPVSA 186 Query: 240 GFMKLLAMTPIGKETF-----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 + + ++ F+N+ ++ K +AG+ + + Sbjct: 187 LALDWIKRYLPVRDQQLLKRGKSSDYLFLNSRGGQLTRQAVWQKIKKYCQQAGIAKDVTP 246 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 H +R AT + GA + G + + YT Sbjct: 247 HTLRHSFATHLLEHGADLRVVQEILGHTDISTTQIYT 283 >gi|291286773|ref|YP_003503589.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809] gi|290883933|gb|ADD67633.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809] Length = 312 Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 36/289 (12%), Positives = 91/289 (31%), Gaps = 25/289 (8%) Query: 61 INSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKI----- 114 I + K + +S + K + ++ ++ + D I Sbjct: 2 IKASDNKFMQIDKAVSIFLKFMQQEKGASDHTIKNYSRDLADLCMYLEDSAIDDIQDADF 61 Query: 115 -TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 T + + + + S+ + + ++ F + ++ + NP ++ PK++ + + Sbjct: 62 FTLRGFVAMLFDKGLAKSTIERKIACLKSFFAFMQKKNHTDDNPARMLKFPKKEQKAFKV 121 Query: 174 WTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQK 228 + + + G + L E + +G+R S+ + + I K Sbjct: 122 FNIDSIIALLDAPDKDKPAGMRDALIQELMYGTGVRVSELVGLNLSDIDFGGMRILVRGK 181 Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINN-----------DKQKMNATQFSIWFKAKA 277 V + D ++++ K ++ + Sbjct: 182 GKKERIVPIADMHIEMINDYLDVKMDICNGYLPDNEAIFINKFGSRLTDRSVRRIVEKYL 241 Query: 278 TKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 AG+ S H R AT + GA + + G +++ + YT Sbjct: 242 KIAGLPMDFSPHSFRHSYATHLLEGGADLRTIQSLLGHESLTTTQKYTH 290 >gi|206901908|ref|YP_002251233.1| recombinase [Dictyoglomus thermophilum H-6-12] gi|206741011|gb|ACI20069.1| recombinase [Dictyoglomus thermophilum H-6-12] Length = 301 Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats. Identities = 40/273 (14%), Positives = 96/273 (35%), Gaps = 18/273 (6%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTP 130 I Y + + + N+ S+ + + D +++R + + + Sbjct: 9 IENYINYLRFERNYSPNTLRSYSRDLMDFYKYCKEKDLDFTNKRNVRSYIQFIAQKNYKN 68 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS--- 187 S+ ++ + S+R F++ + E + + + + PK + + + + +++ + + S Sbjct: 69 STFVRKVISLRSFFEYLLTFEKINEDLTVFIPTPKAEKKLPQFLSVDEVMKLLNSPSLDD 128 Query: 188 -EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLL 245 G + R E L +G+R S+ + + N I+ V + + +K+L Sbjct: 129 LIGIRDRAIIETLYATGIRVSELVGMNEEDINWNYGEIRVFGKRAKERIVIVGEETLKIL 188 Query: 246 AMTPIGKET---------FFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296 + FF+N +++ + K S H +R AT Sbjct: 189 QLYKDHVRPKLLKKPEKAFFLNAKGGRISDRAIRMIIKKYTKDFNKKVSPHTLRHTFATH 248 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + GA + G + + YT Sbjct: 249 LLEGGADLRYVQELLGHVRISTTQIYTHLTSEQ 281 >gi|116748125|ref|YP_844812.1| tyrosine recombinase XerD [Syntrophobacter fumaroxidans MPOB] gi|116697189|gb|ABK16377.1| tyrosine recombinase XerD subunit [Syntrophobacter fumaroxidans MPOB] Length = 294 Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats. Identities = 50/289 (17%), Positives = 101/289 (34%), Gaps = 24/289 (8%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSGVESR- 126 + + L+ N+ + +++ G + ++ + I S +ES Sbjct: 2 DRWLDLFLNHITVEKGLSPNTVAGYGGDLQEMLGYFGKHGVSSWEAVSREDIVSYLESVS 61 Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + + S + L ++R FK+ R ++ +P V PK + T ++ + Sbjct: 62 GRLSHRSKARRLAALRAFFKYLERTGKMSGSPAALVRFPKFNPGLPKTLTGREVDALLAA 121 Query: 186 WSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDG 240 + G+ + R E L +GLR S+ + + + + V + + Sbjct: 122 PAAGTPLGQRDRAMLELLYATGLRVSELADLQLDQVHLEAGYLVARGKGDKERPVPMGEP 181 Query: 241 FMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHG 288 + L + F+N K+ K A K+G+ N + H Sbjct: 182 AGEALQIYLRDGRRRLLKDGRSREVFLNRRAVKLTRQGIWKIIKQYALKSGIRQNLTPHV 241 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 +R AT + GA L A G + + YT A + RL + + Sbjct: 242 LRHSFATHLLENGADLRSLQAMLGHADISTTQIYTHVA-KKRLKEVHLK 289 >gi|323341690|ref|ZP_08081923.1| tyrosine recombinase XerC [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464115|gb|EFY09308.1| tyrosine recombinase XerC [Erysipelothrix rhusiopathiae ATCC 19414] Length = 296 Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats. Identities = 33/278 (11%), Positives = 91/278 (32%), Gaps = 20/278 (7%) Query: 72 KWLISEYRKSAHWGSLA-VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 + L+ ++ + + + ++ +++E Q + ++ + + Sbjct: 4 EELVMDFMRHIAITNTSSEHTNVAYERDIRQFLDFIEGQAVHEVDRLMAYDYLNMLYDSN 63 Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 SS + ++++R +K+ + NP ++ ++ ++++ Sbjct: 64 LSSSSVARKISTLRSFYKFLQINYGLTDNPFQQIKIKRQGRHLPHFLMYDEIETLLLSCD 123 Query: 188 E---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243 E G + ++ E + GLR S+ + L S++ + + + Sbjct: 124 ESVLGVRNQVMIELMYACGLRVSEVVDLQIHDLDLTERSLRVIGKGNKERQLFFYESLVP 183 Query: 244 LLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRK 291 L F N + + + + AG+ H +R Sbjct: 184 KLWSYLNLYRPQFPNVSDTEAVFLNQRGKPLTPRGIQHILEHQGKTAGLRMKLHPHMLRH 243 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT D GA+ + G +++ + YT + + Sbjct: 244 SFATHLLDNGASLRVVQTLLGHESLSTTQIYTHVSMQK 281 >gi|328957336|ref|YP_004374722.1| site-specific tyrosine recombinase XerD [Carnobacterium sp. 17-4] gi|328673660|gb|AEB29706.1| site-specific tyrosine recombinase XerD [Carnobacterium sp. 17-4] Length = 299 Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats. Identities = 45/284 (15%), Positives = 102/284 (35%), Gaps = 25/284 (8%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESR 126 L + EY + L+ N+ S++ Q I + + +I + S ++ Sbjct: 4 LNEDVEEYIRFLTIERGLSKNTIESYKRDIRQYLVFIEQIKVTKWDQIDRYTVLSFLQDL 63 Query: 127 K---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 K + + I+ ++ +R ++ +++ +P L ++ PK+ + + + +++ + Sbjct: 64 KEKEKSAGTIIRMISCLRQFHQFLKQEQISQSDPMLHIDTPKKAQKLPKVLSIKEVDRLI 123 Query: 184 SFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELP 238 + G + R E + +GLR S+ + L ++ K + L Sbjct: 124 ETPNTGETLGLRDRAMLEVMYATGLRVSELTELKLDDLHLSLGLIQTIGKGDKERIIPLG 183 Query: 239 DGFMKLLAMTPIGK-----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--S 285 D + + F+N+ +K+ K KAG+ K + Sbjct: 184 DLAITWIEKYLRYSRTKLEKDGQRSPHLFLNHHGRKLTRQGVWKNLKIIVKKAGIEKEVT 243 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 H +R AT + GA + G + + YT + Sbjct: 244 PHTLRHSFATHLLENGADLRVVQELLGHSDISTTQIYTHITKKR 287 >gi|206895374|ref|YP_002247059.1| tyrosine recombinase XerC [Coprothermobacter proteolyticus DSM 5265] gi|206737991|gb|ACI17069.1| tyrosine recombinase XerC [Coprothermobacter proteolyticus DSM 5265] Length = 286 Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats. Identities = 42/283 (14%), Positives = 91/283 (32%), Gaps = 11/283 (3%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 L++++ + + ++ ++ Q + T + + P Sbjct: 6 WAELLNQFLNTLEASGYSEHTLKAYYVDLKQYFMF--TTSLDQKTVDDYLMHLSRKGMAP 63 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINP-CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 +S +FL+S+R + +Q Y + + + + + Sbjct: 64 TSLNRFLSSLRKFCSFLKKQGYEMPIMELSGFKTGLKVPRVVLRDDISKLLELPENTPIE 123 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFMKLLAMT 248 + + FLL +G R S++ V+ + K TV +P +KLL Sbjct: 124 LRDKALVWFLLGTGTRISEALSLKVEDIDFRTASCQVLGKGNKKRTVYIPSKALKLLKRY 183 Query: 249 PIGKE----TFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGA 302 F+N Q + + K G+ H +R AT + GA Sbjct: 184 IEVFNLTEGPLFLNMQGQGLTDRGARYILHKISKKYGLRDLVHPHTLRHTFATNLLEEGA 243 Query: 303 TAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSRRISSVVD 344 E+ G ++ + YT + ++ I+ R+ + Sbjct: 244 NLREIQELLGHSSLRSTQIYTHVSPVMVKEAIEAMRKEAKNKP 286 >gi|157372126|ref|YP_001480115.1| site-specific tyrosine recombinase XerD [Serratia proteamaculans 568] gi|157323890|gb|ABV42987.1| tyrosine recombinase XerD [Serratia proteamaculans 568] Length = 299 Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats. Identities = 44/282 (15%), Positives = 92/282 (32%), Gaps = 24/282 (8%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVES 125 LI ++ + +LA N+ S+ + + + + + Sbjct: 6 SALIEQFLDALWLERNLAENTLASYRLDLQALGAWLNQQNTSLLQAQALDLQAFLADRVE 65 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + +S+ + L++MR LF++ R+ + +P + PK + ++ + Sbjct: 66 GGYKATSSARLLSAMRRLFQYLYRENMRSDDPTALLASPKLPQRLPKDLSEAQVDALLKA 125 Query: 186 WSEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDG 240 + + E L +GLR S+ + + ++ V L + Sbjct: 126 PCVDQPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKERLVPLGEE 185 Query: 241 FMKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAH 287 + + + +N N Q+M F K A AG++ S H Sbjct: 186 AVYWIENYLEHGRPWMVNGQALDVLFPSNRSQQMTRQTFWHRIKHYAILAGIDSERLSPH 245 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R AT + GA + G + + YT A Sbjct: 246 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 287 >gi|217967906|ref|YP_002353412.1| integrase family protein [Dictyoglomus turgidum DSM 6724] gi|217337005|gb|ACK42798.1| integrase family protein [Dictyoglomus turgidum DSM 6724] Length = 300 Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats. Identities = 44/276 (15%), Positives = 102/276 (36%), Gaps = 19/276 (6%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTP 130 I Y + + + N+ S+ + + D ++IR + + + Sbjct: 9 IENYINYLRFERNYSPNTLRSYLRDLLDFYKYCKEKDLDFTNKRNIRSYIQFIAQKGYKN 68 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS--- 187 S+ ++ + S+R F++ + E + + + + PK + + + + +++++ + S Sbjct: 69 STFVRKVISLRSFFEYLLTFEKIKEDLTVFIPTPKIEKKLPQFLSIDEVRKLLNSPSLDN 128 Query: 188 -EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLL 245 G + R E L +G+R S+ + + N I+ V + + +K+L Sbjct: 129 LIGIRDRAIIETLYATGIRVSELVGINEEDINWNYGEIRVFGKRAKERVVIVGEETLKIL 188 Query: 246 AMTPIGKET---------FFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296 + FF+N +++ + K + S H +R AT Sbjct: 189 QLYKDYVRPKLLKKPEKAFFLNAKGGRISDRGVRMIIKKYTKEFNKKISPHTLRHTFATH 248 Query: 297 SADAGATAHELMATYGWKTVDQAETYTK-GADRIRL 331 + GA + G + + YT D+IR Sbjct: 249 LLEGGADLRYVQELLGHVRISTTQIYTHLTTDQIRR 284 >gi|330504633|ref|YP_004381502.1| site-specific tyrosine recombinase XerD [Pseudomonas mendocina NK-01] gi|328918919|gb|AEB59750.1| site-specific tyrosine recombinase XerD [Pseudomonas mendocina NK-01] Length = 313 Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats. Identities = 50/281 (17%), Positives = 99/281 (35%), Gaps = 24/281 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESRKHTP 130 LI + ++ L+ +++ ++ S + I I + R Sbjct: 23 LIERFLEAQWLEKGLSAHTQAAYRSDLEHFNAWLDARGLALQHIGRDAILDHLAWRLEQG 82 Query: 131 SSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 A +FL+ +R +++ +R+ ++ +P L VE P+ + ++ D++ Sbjct: 83 YQARSTARFLSGVRGFYRFLLREMLISEDPTLQVELPQIGRPLPKSLSEADVEALLQAPD 142 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 G + R E L GLR S+ ++ + ++ V L + + Sbjct: 143 LDDPIGLRDRAMLEVLYACGLRVSELVGLTLEQVNLRQGVLRVFGKGSKERLVPLGEEAI 202 Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 + F + ++M F K +A AG++K S H +R Sbjct: 203 AWIERYMREARPLLLGGKPSDVLFPSLRGEQMTRQTFWHRIKHQARVAGISKALSPHTLR 262 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 AT + GA + G + + YT A R RL Sbjct: 263 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHIA-RARL 302 >gi|254172394|ref|ZP_04879069.1| integrase/recombinase [Thermococcus sp. AM4] gi|214033323|gb|EEB74150.1| integrase/recombinase [Thermococcus sp. AM4] Length = 283 Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats. Identities = 41/283 (14%), Positives = 97/283 (34%), Gaps = 18/283 (6%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 +I E+ + N+ + Y + + + G D+R + + ++ S Sbjct: 8 VIEEFATYLDLEGKSPNTIRMYTYYVRRYLEQGGGLDFRS--ALRFLARLRREGYSNRSL 65 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-GSQP 192 + ++R F++ ++ PK + T E++++ S + Sbjct: 66 NLVVQALRAYFRFEG-----LDEEAEKLKPPKVPKSLPKALTPEEVRKILSVIPLTRRRD 120 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250 RL L +GLR S+ C + I +++ K V + + + Sbjct: 121 RLIVLLLYGAGLRVSELCNLKRGDVDLDRGIITVRGGKGAKDRVVPISPALAEEIRAYLR 180 Query: 251 GKETFFIN-------NDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGAT 303 ++ K +++ KAGV + H +R AT + G Sbjct: 181 ERKDNSEYLLVEVRRGTKDRLSPKTVWYLLNRYGKKAGVKVTPHMLRHSFATHMLERGVD 240 Query: 304 AHELMATYGWKTVDQAETYTKG-ADRIRLGIKNSRRISSVVDS 345 + G + + YTK + ++ + ++ + S+++ Sbjct: 241 IRAIQELLGHSNLSTTQIYTKVTVEHLKKAQEKAKLLESLMEE 283 >gi|145219991|ref|YP_001130700.1| tyrosine recombinase XerD [Prosthecochloris vibrioformis DSM 265] gi|145206155|gb|ABP37198.1| tyrosine recombinase XerD [Chlorobium phaeovibrioides DSM 265] Length = 306 Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats. Identities = 43/280 (15%), Positives = 94/280 (33%), Gaps = 26/280 (9%) Query: 71 LKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRK 127 ++ + + + N+R S+ + + ++ G I I ++ Sbjct: 10 FGAVLENFLNYLLIERNFSPNTRDSYRNDLQRYLQAMQEGCGSLEAINPDSINRFLDELH 69 Query: 128 HTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 T SS + ++++R L ++ + + NP ++ +PK T ++ + Sbjct: 70 KTGLEASSIARNVSAIRSLHRFLINDRVLESNPAENLHQPKLPKYLPSVLTLDETMRILQ 129 Query: 185 FW-------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236 + + E L +G+R S+ Q+L I+ V Sbjct: 130 APAQKVPPEKLYLRDQAILELLYATGMRVSELVNLKQQNLYLPEQFIRVFGKGSKERLVP 189 Query: 237 LPDGFMKLLAMTPIG----------KETFFINNDKQKMNATQFSIWFKAKATKAGVNKS- 285 + + L + ++ F+N +KM+ K A AG+ K+ Sbjct: 190 VGSSAVNSLTLYRQKLRIQLAGAQSEDCLFLNARGKKMSRMAVFTIVKEYAMLAGIPKTV 249 Query: 286 -AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H R AT + GA + G ++ + Y+ Sbjct: 250 SPHTFRHTFATHLLEGGADLRAVQEMLGHSSIVATQIYSH 289 >gi|161507450|ref|YP_001577404.1| integrase/recombinase [Lactobacillus helveticus DPC 4571] gi|260101638|ref|ZP_05751875.1| integrase/recombinase XerD [Lactobacillus helveticus DSM 20075] gi|160348439|gb|ABX27113.1| Integrase/recombinase [Lactobacillus helveticus DPC 4571] gi|260084571|gb|EEW68691.1| integrase/recombinase XerD [Lactobacillus helveticus DSM 20075] gi|323466665|gb|ADX70352.1| Tyrosine recombinase xerD [Lactobacillus helveticus H10] gi|328467464|gb|EGF38539.1| tyrosine recombinase xerD [Lactobacillus helveticus MTCC 5463] Length = 301 Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats. Identities = 44/282 (15%), Positives = 97/282 (34%), Gaps = 25/282 (8%) Query: 67 KPTTLKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI-----TTKHIR 120 + L+ I +Y + S L+ N+ ++ ++ + Sbjct: 2 EKNKLQDQIDDYLRYSQIERGLSSNTITAYRQDLEEYLAFVKKEGMDSWPTEASDVDAFL 61 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + SS + ++SMR ++W RQ +NP L ++ PK++ ++++ Sbjct: 62 ARQYDLNKATSSISRLISSMRKFYQWLARQNIQKLNPMLEIDLPKKERRLPVALNQKEIN 121 Query: 181 QFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITV 235 + G + R E L +G+R S+ +Q L ++ ++ K + Sbjct: 122 DLLAQPDIKRKLGLRDRAILETLYATGMRVSELINLELQDLHEDLGLVRVLGKGSKERLI 181 Query: 236 ELPDGFMKLLAMTP------------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV- 282 + + + E F+N+ +++ K AG+ Sbjct: 182 PISSVALHWIKQYQKEVRDPLILKAGQNDEHIFLNSRAKQLTRQAIWQMIKKYCQSAGIT 241 Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + + H +R AT + GA + G + + YT Sbjct: 242 KDVTPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYT 283 >gi|322831506|ref|YP_004211533.1| tyrosine recombinase XerD [Rahnella sp. Y9602] gi|321166707|gb|ADW72406.1| tyrosine recombinase XerD [Rahnella sp. Y9602] Length = 319 Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats. Identities = 48/287 (16%), Positives = 102/287 (35%), Gaps = 25/287 (8%) Query: 74 LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR---K 127 L ++ +LA N+ S+ ++ D ++ + ++ + R Sbjct: 28 LTEQFLDMLWIERNLAENTLSSYRQDLKSLLGWLHHNNTDLLHVSAEDLQLFLSERIEGG 87 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + +S+ + L++MR LF++ R+ +P + PK + ++ + + S Sbjct: 88 YKATSSARLLSAMRRLFQYMNRESVRQDDPTALLSSPKLPQRLPKDLSEAQVDALLASPS 147 Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 + + E L +GLR S+ + L ++ V + + + Sbjct: 148 VDVPLELRDKAMLELLYATGLRVSELVGLTLSDLSLRQGVVRVIGKGNKERLVPMGEEAV 207 Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289 + + F +N Q+M F K A AG++ S H + Sbjct: 208 YWIENYFEHGRPWLLNGQSLDVVFPSNRAQQMTRQTFWHRIKHYAILAGIDAERLSPHVL 267 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKN 335 R AT + GA + G + + YT A +R++L + Sbjct: 268 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKLLHQQ 314 >gi|262370170|ref|ZP_06063497.1| tyrosine recombinase XerD [Acinetobacter johnsonii SH046] gi|262315209|gb|EEY96249.1| tyrosine recombinase XerD [Acinetobacter johnsonii SH046] Length = 305 Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 49/291 (16%), Positives = 99/291 (34%), Gaps = 19/291 (6%) Query: 57 KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI--IRKSGDFDYRKI 114 K+ + +P + PT L + ++ +++ ++R ++ S Q ++ Sbjct: 4 KKPRVPAPVQIPTQLS-FLHGFKDYLIAQTVSPHTRNAYLSDLLQCSECSHVSMPEWSSD 62 Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 + + + +P S + L+++R FK+ Q+ + NP + PK + Sbjct: 63 DVADVLLTLTKQGKSPRSIARCLSALRSFFKFLREQKLRSDNPVALHKTPKIGRALPKDL 122 Query: 175 TKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT- 229 +++D+ G + R FE L GLR S+ + + ++ Sbjct: 123 SEQDVDALIQAPDIETALGLRDRAMFEVLYACGLRVSELLNLRLDLINLKQGYLRITGKG 182 Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKA 280 V L ++ + I M+ F K A +A Sbjct: 183 NKERLVPLGQIAVEWVEKYLIESRPQLYKSATDYLFLTQHGGIMSRQNFWYAIKRYALQA 242 Query: 281 GV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 G+ S H +R AT + GA + G + + YT A Sbjct: 243 GIQAELSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR 293 >gi|261211515|ref|ZP_05925803.1| site-specific recombinase XerD [Vibrio sp. RC341] gi|260839470|gb|EEX66096.1| site-specific recombinase XerD [Vibrio sp. RC341] Length = 302 Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 44/280 (15%), Positives = 102/280 (36%), Gaps = 24/280 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESR---K 127 L+ ++ + LA N+ S+ + +++ + I+ ++ Sbjct: 11 LVEQFLDTMWLERGLAENTVASYRNDLSKLLEWMEQHHYRLDFISFSGLQEYQSWLSEQN 70 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + PSS + L+++R LF++ R++ A +P + PK + ++ + + Sbjct: 71 YKPSSKARMLSAIRRLFQYLHREKVRADDPSALLISPKLPIRLPKDLSEAQVDALLNAPD 130 Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM 242 + + + E L +GLR ++ ++++ ++ G V + + + Sbjct: 131 PQTPIELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVIGKGGKERLVPMGENAI 190 Query: 243 KLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289 + + + F ++ Q+M F K A AG++ S H + Sbjct: 191 EWIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAGIDVEKLSPHVL 250 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + GA + G + + YT A Sbjct: 251 RHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER 290 >gi|315633750|ref|ZP_07889040.1| tyrosine recombinase XerD [Aggregatibacter segnis ATCC 33393] gi|315477792|gb|EFU68534.1| tyrosine recombinase XerD [Aggregatibacter segnis ATCC 33393] Length = 297 Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 41/280 (14%), Positives = 90/280 (32%), Gaps = 24/280 (8%) Query: 74 LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESRK 127 L+ + L+ N+ S+ + + D + + + Sbjct: 6 LLDLFLNELWIGKGLSPNTVQSYRLDLTALCDWLSERKLSLLDLDSVDLQTFLGERVEQG 65 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 + +S + L+++R LF++ +++Y +P + PK + + T++ + + Sbjct: 66 YKATSTARLLSAIRKLFQYLYQEKYRTDDPSAVLSSPKLPSRLPKYLTEQQVTDLLNVQS 125 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-----------FSIKTQKTGTI 232 + + E L +GLR ++ + N I Sbjct: 126 LEQPIELRDKAMLELLYATGLRVTELVSLHTDSISLNQGVVRVIGKGNKERIVPMGEEAT 185 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289 V+ F + + + + F + +M F K A A ++ S H + Sbjct: 186 HWVKQFMLFARPILLNGQSSDVLFPSRRGTQMTRQTFWHRIKHYAVLAEIDSNMLSPHVL 245 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + GA + G + + YT A Sbjct: 246 RHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKER 285 >gi|295426297|ref|ZP_06818957.1| tyrosine recombinase XerD [Lactobacillus amylolyticus DSM 11664] gi|295064036|gb|EFG54984.1| tyrosine recombinase XerD [Lactobacillus amylolyticus DSM 11664] Length = 299 Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 46/278 (16%), Positives = 98/278 (35%), Gaps = 25/278 (8%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR-----SGVE 124 L I +Y + L+ N+ ++ + + T+ + + + Sbjct: 4 LNDQIEDYLRFGQIERGLSENTITAYRQDLTEFLNFLQQEKIDSWPTEAVEIDAFLARQK 63 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 SS + ++S+R ++W RQ +NP + ++ PK++ T+++M + + Sbjct: 64 DLNKASSSISRMISSLRKFYQWLARQNIQKLNPMIEIDSPKKQRRLPVALTQDEMDRLLA 123 Query: 185 FWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPD 239 + G + R E + +G+R S+ ++ + ++ K V + + Sbjct: 124 APNVEKKLGLRDRALLEMMYATGMRVSEVINLQLEDVHPDLKLIKVFGKGSKERLVPVSN 183 Query: 240 GFMKLLAMTP------------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--S 285 + LA E F+NN + K A +NK + Sbjct: 184 IALDWLAKYEKEVRESLVLKQGRNTEFVFLNNRGGSLTRQAVWQIIKHYCQLANINKDVT 243 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 H +R AT + GA + G + + YT Sbjct: 244 PHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYT 281 >gi|28211202|ref|NP_782146.1| integrase/recombinase [Clostridium tetani E88] gi|28203642|gb|AAO36083.1| integrase/recombinase [Clostridium tetani E88] Length = 303 Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 45/284 (15%), Positives = 106/284 (37%), Gaps = 20/284 (7%) Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR 126 T LI++Y L+ N+ ++ ++ + + D + I + V+S Sbjct: 10 RTRDELINKYVSRLMDKGLSKNTLDAYIRDVNRFLDFLKEREEDILDVEEVTIMAYVQSL 69 Query: 127 KHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + + SS ++ + S+R +K+ ++ Y+ +P ++ E PK K + T E++ Sbjct: 70 QKSRKANSSIVRNVVSIRNFYKFLYKKGYIDEDPVINYELPKVKRNIPKVLTVEEVDILL 129 Query: 184 SFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KTGTIITVELP 238 + + G + + E + +G++ ++ V + + IK + + + Sbjct: 130 NAPNISEEKGIRDKAMLEVMYATGVKVTELLNMTVFDVNLKLSYIKCRGSKNKERIIPIG 189 Query: 239 DGFMKLLAMTPIGKETFFINNDKQ--------KMNATQFSIWFKAKATKAGVNKSA--HG 288 + L + I N +M F K A +G+ KS + Sbjct: 190 AYAVNCLDDYLSVRPNINIYNLDYLFLNLKGTQMTRQGFWKIVKKYAKISGIKKSINSYT 249 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 +R A GA + G + + Y+ +++ ++ Sbjct: 250 LRHSFAVHLLQNGADMKSVQELLGHSDLAATQIYSTISNKSKIA 293 >gi|325684289|gb|EGD26462.1| integrase/recombinase XerD [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 301 Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 40/277 (14%), Positives = 99/277 (35%), Gaps = 24/277 (8%) Query: 71 LKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVE 124 L I++Y + S L+ N+ ++ + + + + + + Sbjct: 7 LAEQINDYLRYSQIERGLSPNTIAAYHQDLLEFLAFVKEEQMPAWPLEAVEIDAFLAKER 66 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 SS + ++++ ++W VRQ+ +A++P ++ PKR+ T+ ++ + Sbjct: 67 DLGKANSSISRLVSTLSRFYQWLVRQQLIALDPMSQIDAPKREKRMPLALTEAEVGKLLE 126 Query: 185 FWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPD 239 G + R E L +G+R S++ + + ++ K + + Sbjct: 127 QPDLTTDLGIRDRALVELLYATGIRVSEAVNLKLADVHADLQLIKVLGKGNKERLIPVSA 186 Query: 240 GFMKLLAMTPIGKETF-----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 + + ++ F+N+ ++ K +AG+ + + Sbjct: 187 LALDWIKRYLPVRDQQLLKRGKSSDYLFLNSRGGQLTRQAVWQKIKKYCQQAGIAKDVTP 246 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 H +R AT + GA + G + + YT Sbjct: 247 HTLRHSFATHLLEHGADLRVVQEILGHTDISTTQIYT 283 >gi|238855202|ref|ZP_04645521.1| tyrosine recombinase XerD [Lactobacillus jensenii 269-3] gi|260664565|ref|ZP_05865417.1| tyrosine recombinase XerD [Lactobacillus jensenii SJ-7A-US] gi|282932504|ref|ZP_06337929.1| tyrosine recombinase XerD [Lactobacillus jensenii 208-1] gi|313471969|ref|ZP_07812461.1| tyrosine recombinase XerD [Lactobacillus jensenii 1153] gi|238832094|gb|EEQ24412.1| tyrosine recombinase XerD [Lactobacillus jensenii 269-3] gi|260561630|gb|EEX27602.1| tyrosine recombinase XerD [Lactobacillus jensenii SJ-7A-US] gi|281303453|gb|EFA95630.1| tyrosine recombinase XerD [Lactobacillus jensenii 208-1] gi|313449040|gb|EFR61308.1| tyrosine recombinase XerD [Lactobacillus jensenii 1153] Length = 300 Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 38/263 (14%), Positives = 95/263 (36%), Gaps = 24/263 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI-----RSGVESRKHTPSSAIQFLTS 139 L+ N+ S++ +Q + + + S+ + +T+ Sbjct: 20 RGLSKNTVNSYQLDLNQFVEYLDKEKISDWPEDPLVIDSYLAKQRDEGKKTSTISRGITT 79 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLA 195 +R +++ +RQ + ++P + ++ PK++ +++++ + + + + + R Sbjct: 80 LRRFYRYLLRQHILVVDPLIQIDTPKQEKRLPLALSQKEVSELLAQPNLNTATGLRDRAI 139 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-------------TQKTGTIITVELPDGFM 242 E L +G+R S+ L ++ I+ T + L + Sbjct: 140 LELLYATGMRVSELINLKETDLHTDLKIIRVLGKGSKERLVPVTDFALNWVDKYLKEVRD 199 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 L + + F+NN ++ K + A ++K + H +R AT + Sbjct: 200 PALLKKGVACDFLFLNNRAGQLTRQAVWQSIKKYSKLARIDKDITPHTLRHTFATHLLEN 259 Query: 301 GATAHELMATYGWKTVDQAETYT 323 GA + G + + YT Sbjct: 260 GADLRVVQEILGHSDISTTQIYT 282 >gi|294084567|ref|YP_003551325.1| hypothetical protein SAR116_0998 [Candidatus Puniceispirillum marinum IMCC1322] gi|292664140|gb|ADE39241.1| hypothetical protein SAR116_0998 [Candidatus Puniceispirillum marinum IMCC1322] Length = 470 Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 44/335 (13%), Positives = 94/335 (28%), Gaps = 24/335 (7%) Query: 14 ERTRHGKIIYYFRK---GHGRRIRLPYPHESTFIPAYMSA-----LTGSTPKREYINSPR 65 T GK YY + +R+ + T A A + + S + Sbjct: 32 RITPGGKKTYYVQYMVYKKIKRVAIGAHGIFTTERARNQATIMLGEIKAGADPQKEKSTK 91 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVE 124 +K ++ L Y + ++ + Y +I GD + + + Sbjct: 92 RKELFVRDLAERYMEEHVIPHCKPSTAKGYRRYLDKHLIPFFGDMKIKDVQRSDVAEFHH 151 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 S + TP A L + +F A + K ++ + E+ + S Sbjct: 152 SLRRTPYEANHGLEIISKMFNLAEMWGLRDDHTNPRRHIKKYPSKARERYLSEEEVKRLS 211 Query: 185 FWSEGSQPR--------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 + + + LL +G R + ++ + +K + T Sbjct: 212 AVLDEIKQYPDENLAAVYCIQLLLLTGCRLGEIRSLKWDYVDRKMQVLKLPDSKTGAKYV 271 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKM------NATQFSIWFKAKATKAGV-NKSAHGV 289 + L ++N + ++ AG+ + H + Sbjct: 272 YVGNTVMNLLDEVHAHPARPVDNPYVIWGLIEGSHLDNVQKPWRRFRKMAGIEDVRIHDL 331 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R A+ + G + + G V Y Sbjct: 332 RHSFASFAVSKGMSLAVIGRLLGHTQVQTTARYAH 366 >gi|165976973|ref|YP_001652566.1| site-specific tyrosine recombinase XerD [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|303250986|ref|ZP_07337174.1| site-specific tyrosine recombinase XerD [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307253199|ref|ZP_07535075.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|165877074|gb|ABY70122.1| integrase/recombinase XerD [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|302650143|gb|EFL80311.1| site-specific tyrosine recombinase XerD [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306859343|gb|EFM91380.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 297 Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 41/284 (14%), Positives = 97/284 (34%), Gaps = 24/284 (8%) Query: 71 LKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVES 125 L +I ++ + L+ N+ +++ + + Sbjct: 4 LDPIIEQFLDTLWQEHGLSENTSVAYRLDLESFSEWLPTPKAFLTLDHFDLQAFLGERLE 63 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + +S+ + L+ +R F++ + Y +P L++ P++ + ++E + Sbjct: 64 LGYKATSSARMLSCLRKFFRFLYTENYRQDDPTLTLTSPRKPAHLPKSLSEEQVMDLLDS 123 Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTII------- 233 + + + E L +GLR S+ + +L ++ Sbjct: 124 PNTLDPVELRDKAMLELLYATGLRVSELVSLSIDNLSLRQGVVRVVGKGDKERLVPIGEE 183 Query: 234 ---TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287 ++ + + + + + + F + Q+M F K A AG++ S H Sbjct: 184 AGYWIQEFFRYGRAILLNNLQSDVVFPSRRGQQMTRQTFWHRIKHYAVLAGIDSEKLSPH 243 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +R AT + GA + G + + YT A + RL Sbjct: 244 VLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVA-KARL 286 >gi|300214635|gb|ADJ79051.1| Integrase/recombinase, XerD/RipX family [Lactobacillus salivarius CECT 5713] Length = 297 Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 50/281 (17%), Positives = 110/281 (39%), Gaps = 25/281 (8%) Query: 77 EYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGVESRKH---T 129 +Y L+ N+ S+ + + + +++ + I + ++S K+ Sbjct: 9 DYLHYLKVERGLSENTINSYGIDLKLFLEYLRENEIPSFKQVNKEVIVNYMQSEKNNNKA 68 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-- 187 SS ++ ++S+R F++ +++ + +P L ++ PK+K + TKE++++ + Sbjct: 69 NSSILRSVSSLRKFFQYLAQEKIIEKDPMLLIDTPKKKQHLPQVLTKEEVEKLLRSPNTG 128 Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKL 244 G + R E + +GLR S+ ++ L + + K V + D +K Sbjct: 129 QVLGLRDRAMLELMYATGLRISEIINLKLEDLHLTMGTLQTLGKGHKERIVPVGDEAIKW 188 Query: 245 LAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292 + F+N + KA+ KAG+ K + H +R Sbjct: 189 VNRYLEEARPKLLKQKRSNYLFLNFHGNNLTRQGVWKNLKAEVRKAGIQKNITPHTLRHS 248 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 AT + GA + G + + YT ++ +L Sbjct: 249 FATHILENGADLRIVQELLGHADISTTQIYTHLSN-KQLAD 288 >gi|206900840|ref|YP_002251182.1| tyrosine recombinase XerD [Dictyoglomus thermophilum H-6-12] gi|206739943|gb|ACI19001.1| tyrosine recombinase XerD [Dictyoglomus thermophilum H-6-12] Length = 296 Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 38/275 (13%), Positives = 91/275 (33%), Gaps = 20/275 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESR--KHT 129 + ++ + +++ + S+ + I + + + + + + + K+ Sbjct: 5 LEDFLFYLKFEKNMSSATIDSYRRDLEDFINFLQKEGINIKNLKREEWQRYLVALYKKYK 64 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--- 186 S + ++S+R K+ +R+ Y+ N + PK ++++ F Sbjct: 65 IKSIARKISSIRSFIKFLLREGYINKNYSNFMLIPKIPMYLPEVLDPKEIESFLKIPDPL 124 Query: 187 -SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKL 244 G + E +G+R S+ +Q++ ++ V L D ++ Sbjct: 125 SPLGIRNMAILETFYATGIRVSELVNLNIQNVDLEEKYVRCFGKGEKERIVPLGDYAVES 184 Query: 245 LAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294 L + F + + +++ KA + G+ K S H R A Sbjct: 185 LKRYLSVRHLFNPKDKEALFLNKKGERITRQGVWFIIKAYSKILGLPKKVSPHTFRHSFA 244 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 T GA + G + + YT Sbjct: 245 THLLSNGADIRIVQELLGHSDIATTQIYTHIVSSK 279 >gi|257869544|ref|ZP_05649197.1| phage integrase [Enterococcus gallinarum EG2] gi|257803708|gb|EEV32530.1| phage integrase [Enterococcus gallinarum EG2] Length = 296 Score = 144 bits (362), Expect = 3e-32, Method: Composition-based stats. Identities = 47/269 (17%), Positives = 105/269 (39%), Gaps = 24/269 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTP---SSAIQFLT 138 L+ N+R S+E +Q + D++ + I S ++ + + ++ I+ ++ Sbjct: 16 RGLSQNTRKSYERDLEQYLTFLTEQHIKDWQAVDRVLILSFLQQLQQSGKSSATIIRMVS 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT----KEDMQQFKSFWSEGSQPRL 194 S+R ++ ++ + +P ++ PK++ + + + ++ + G + R Sbjct: 76 SLRRFHQFLRQERFTDHDPMQHIDSPKKQQKLPDTLSLSEVERLIETPDTKEVLGIRDRA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKL--------- 244 E + +GLR S+ ++ L ++ T K V L D ++ Sbjct: 136 ILEVMYATGLRVSELIGLQLKDLHLSMGLLQTTGKGDKERIVPLGDLAIQWIETYLEEAR 195 Query: 245 --LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 L + F+NN ++++ KA KAG+ K + H +R AT + Sbjct: 196 PFLTRKHPEESHLFVNNHGKQLSRQGIWKNLKALVRKAGITKNVTPHTLRHSFATHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329 GA + G + + YT + Sbjct: 256 GADLRTVQELLGHADISTTQIYTHITKKR 284 >gi|308274298|emb|CBX30897.1| Tyrosine recombinase xerD [uncultured Desulfobacterium sp.] Length = 298 Score = 144 bits (362), Expect = 3e-32, Method: Composition-based stats. Identities = 46/296 (15%), Positives = 97/296 (32%), Gaps = 30/296 (10%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKI---TTKHIRSGVESR 126 + L+ +Y L+ + S+ S I G + I T I + + Sbjct: 4 IDSLVDQYLNYLVVEKGLSKKTLESYGSDIATYIDFLGKKGIKDISEADTPTILMHIIAL 63 Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + S + L ++R +K+ VR++ + +P ++ PK T+++++ Sbjct: 64 REDGLKARSRARHLVTLRGFYKFLVREKLITTDPTRVIDLPKSGFYLPNVLTQDEVKSLL 123 Query: 184 SFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVEL- 237 S G + E L +GLR S+ + + + ++ V + Sbjct: 124 SVPDVSKPAGLRDSAMIELLYAAGLRVSELVGLKLFDVNMDACFVRVFGKGSKERIVPIG 183 Query: 238 ---------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--A 286 + L + F+ + + F K +T + K+ Sbjct: 184 TFAKEKVSEYINTARPLILKNNMSNFLFVGRGGKPLTRQGFWKIIKRYSTLGKITKTITP 243 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342 H +R AT + GA + G + + YT + ++I S Sbjct: 244 HSLRHSFATHLLEGGADLRSVQLMLGHVDISTTQIYTHVV------RDHLKKIHSK 293 >gi|307289082|ref|ZP_07569038.1| tyrosine recombinase XerD [Enterococcus faecalis TX0109] gi|306499791|gb|EFM69152.1| tyrosine recombinase XerD [Enterococcus faecalis TX0109] Length = 296 Score = 144 bits (362), Expect = 3e-32, Method: Composition-based stats. Identities = 43/287 (14%), Positives = 97/287 (33%), Gaps = 27/287 (9%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRK 127 + L+ Y L+ N+R S+E + + G + ++ I ++S Sbjct: 3 EQLVD-YLHYLQIERGLSNNTRRSYERDLKKYVDFLQEQGLHSWDEVDRYMITEFLQSLH 61 Query: 128 ---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQ 180 +S I+ ++S+R ++ ++ NP ++ PK+ + + ++ ++ Sbjct: 62 EEQQASASVIRMISSLRGFHQFLRQERLSEHNPMQHIDSPKKVQKLPSTLSVDEVTRLIE 121 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------------NNIFSIKTQK 228 + G + R E + +GLR S+ + L + I Sbjct: 122 TPDTSKPLGMRNRAILEVMYATGLRVSELIEIKLGDLHLSIGLLQTIGKGDKERIIPLGD 181 Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286 + L + F+N+ + ++ K +A + K + Sbjct: 182 YAIQWIQRYMNEARPQLIKNHPNETHLFVNHHGEPLSRQGIWKNLKQIVREAQIEKNITP 241 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 H +R AT + GA + G + + YT + R+ Sbjct: 242 HTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITKQ-RMAD 287 >gi|313500307|gb|ADR61673.1| XerD [Pseudomonas putida BIRD-1] Length = 298 Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats. Identities = 54/281 (19%), Positives = 101/281 (35%), Gaps = 24/281 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESR---K 127 LI ++ + L+ N+R+S+ S + I + R Sbjct: 8 LIDQFLDALWLEKGLSDNTRVSYRSDLALFNGWLQEHSVSLPDAGRDLILDHLAWRLDQG 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + P S +FL+ +R F++ +R++ VAI+P L V+ P+ + ++ D++ Sbjct: 68 YKPRSTARFLSGLRGFFRYLLREKLVAIDPTLQVDMPQLGKPLPKSLSEADVEALLQAPD 127 Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 G + R E L GLR ++ + + ++ V + + + Sbjct: 128 LGEAIGQRDRAMLEVLYACGLRVTELVSLTLDQVNLRQGVLRVMGKGSKERLVPMGEEAV 187 Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 L F + ++M F K A AG++K S H +R Sbjct: 188 VWLDRYQRDGRAELLNGRPSDVLFPSQRGEQMTRQTFWHRIKHHARVAGIDKPLSPHTLR 247 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 AT + GA + G + + YT A + RL Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-KARL 287 >gi|317049380|ref|YP_004117028.1| tyrosine recombinase XerD [Pantoea sp. At-9b] gi|316950997|gb|ADU70472.1| tyrosine recombinase XerD [Pantoea sp. At-9b] Length = 297 Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats. Identities = 47/292 (16%), Positives = 101/292 (34%), Gaps = 25/292 (8%) Query: 69 TTLKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSG 122 T LI ++ + +LA N+ S+ + + + + Sbjct: 1 MTDSDLIEQFLDTLWIERNLAQNTLASYRQDLQTLTGWLHHHERTLLTLEALDLQQFLAE 60 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + +S+ + L+++R LF++ R++ + +P + PK + ++ +++ Sbjct: 61 RVEGGYKATSSARTLSAIRRLFQYLYREKLRSDDPSALLSAPKLPQRLPKDLSESQVERL 120 Query: 183 KSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVEL 237 + + E L +GLR S+ + + ++ V + Sbjct: 121 LQAPSTEIPLELRDKAMLELLYATGLRVSELVGLTLSDVSLRQGVVRVIGKGNKERLVPM 180 Query: 238 PDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---K 284 + + + + F +N QKM F K A AG++ Sbjct: 181 GEEAIYWIEHYMTHGRPWLLNGQTLDVLFPSNRAQKMTRQTFWHRIKHYALLAGIDSEKL 240 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKN 335 S H +R AT + GA + G + + YT A +R+RL + Sbjct: 241 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRLLHQQ 292 >gi|227890931|ref|ZP_04008736.1| site-specific DNA tyrosine recombinase, XerD [Lactobacillus salivarius ATCC 11741] gi|227867340|gb|EEJ74761.1| site-specific DNA tyrosine recombinase, XerD [Lactobacillus salivarius ATCC 11741] Length = 290 Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats. Identities = 48/277 (17%), Positives = 109/277 (39%), Gaps = 24/277 (8%) Query: 77 EYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGVESRKH---T 129 +Y L+ N+ S+ + + + +++ + I + +++ K+ Sbjct: 2 DYLHYLKVERGLSENTINSYGIDLKLFLEYLRENEIPSFKQVNKEVIVNYMQAEKNNNKA 61 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-- 187 SS ++ ++S+R F++ +++ + +P L ++ PK+K + TKE++++ + Sbjct: 62 NSSILRSVSSLRKFFQYLAQEKIIEKDPMLLIDTPKKKQHLPQVLTKEEVEKLLHSPNTG 121 Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKL 244 G + R E + +GLR S+ ++ L + + K V + D +K Sbjct: 122 QVLGLRDRAMLELMYATGLRISEIINLKLEDLHLTMGTLQTLGKGHKERIVPVGDEAIKW 181 Query: 245 LAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292 + F+N + KA+ KAG+ K + H +R Sbjct: 182 VNRYLEEARPKLLKQKRSNYLFLNFHGNNLTRQGVWKNLKAEVRKAGIQKNITPHTLRHS 241 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + GA + G + + YT +++ Sbjct: 242 FATHILENGADLRIVQELLGHADISTTQIYTHLSNKQ 278 >gi|152971840|ref|YP_001336949.1| site-specific tyrosine recombinase XerD [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238896434|ref|YP_002921172.1| site-specific tyrosine recombinase XerD [Klebsiella pneumoniae NTUH-K2044] gi|262042535|ref|ZP_06015692.1| tyrosine recombinase XerD [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330010972|ref|ZP_08306937.1| tyrosine recombinase XerD [Klebsiella sp. MS 92-3] gi|150956689|gb|ABR78719.1| tyrosine recombinase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238548754|dbj|BAH65105.1| tyrosine recombinase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259040095|gb|EEW41209.1| tyrosine recombinase XerD [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328534349|gb|EGF60959.1| tyrosine recombinase XerD [Klebsiella sp. MS 92-3] Length = 298 Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats. Identities = 41/281 (14%), Positives = 94/281 (33%), Gaps = 24/281 (8%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR--- 126 LI ++ + +LA N+ ++ ++ + + +++ + R Sbjct: 6 ALIEQFLDALWLERNLAENTLSAYRRDLTMLVEWLHHRGLSLASVGSDDLQALLAERQSG 65 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 + +S + L+++R F+ R++ +P + PK + ++ +++ Sbjct: 66 GYKATSTARLLSAVRRFFQHLYREKIRPDDPSALLASPKLPQRLPKDLSEAQVERLLQAP 125 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 + + E L +GLR S+ + + ++ V L + Sbjct: 126 LVEQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVLRVVGKGNKERLVPLGEEA 185 Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 + + + F + Q+M F K A AG++ S H Sbjct: 186 VLWVENYLEYGRPWLLNGVASDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHV 245 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R AT + GA + G + + YT A Sbjct: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286 >gi|159901208|ref|YP_001547455.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779] gi|254799344|sp|A9B1E0|XERC_HERA2 RecName: Full=Tyrosine recombinase xerC gi|159894247|gb|ABX07327.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779] Length = 306 Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats. Identities = 42/289 (14%), Positives = 101/289 (34%), Gaps = 25/289 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD------YRKITTKHIRSGVESRK 127 + ++ L N+ ++ + DQ + + + + ++ ++ Sbjct: 5 LEQFLAYLTVERGLTGNTIAAYRTDLDQFVNFIVERNTGSWSNVSRDDLLAFLLFLKEKR 64 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 + S+ + +++ F++ Q + NP +++ PK + T + + Sbjct: 65 YATSTIARRTAAIKSFFEYLQGQHSITTNPTENLDSPKVDRFLPKAITVAQVDELLELPL 124 Query: 187 ----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241 EG + + E L +G+R S+ V + I I+ K + + Sbjct: 125 TTSGPEGLRDKAMLEVLYATGMRVSELVALDVGDVDLAIHQIRCLGKANKERNLPIVGSA 184 Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVR 290 L F+N+ +++ F + K A + G+ + + H +R Sbjct: 185 STALEEYLDIARGQISRNGGDPALFLNHRGKRLTRQGFWLILKGYAERLGLSDLTPHTLR 244 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSRR 338 AT + G E+ G ++ + YT + DR + ++R Sbjct: 245 HSFATHMLNRGKDLREVQELLGHASISTTQIYTHVSNDRAVKYDQAAQR 293 >gi|226328247|ref|ZP_03803765.1| hypothetical protein PROPEN_02140 [Proteus penneri ATCC 35198] gi|225202980|gb|EEG85334.1| hypothetical protein PROPEN_02140 [Proteus penneri ATCC 35198] Length = 312 Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats. Identities = 44/280 (15%), Positives = 89/280 (31%), Gaps = 24/280 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRK 127 +I ++ + L+ N+ S+ + + + + + Sbjct: 21 IIEQFLDNIWLEQGLSANTLSSYRLDLQALGQWLAHHQLDWLSVSTLDLQSFLATRLDEG 80 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + SSA + L++MR LF++ R++ +P + PK + +++ + + Sbjct: 81 YKASSAARLLSTMRRLFQYLYREKLRLDDPSALLSTPKLPKRLPKDLSEQQVDDLLNAPC 140 Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 + + E L GLR S+ + + ++ V L + + Sbjct: 141 IDEPLELRDKAMLEVLYACGLRVSELVGLSLSDISLRQGVLRVIGKGDKERLVPLGEEAI 200 Query: 243 KLLAMTPIGKETFFINNDK----------QKMNATQFSIWFKAKATKAGVN---KSAHGV 289 L + QKM F K A AG++ S H + Sbjct: 201 YWLEQYLQYGRPTLMQGKTDDIVFPSLRGQKMTRQTFWHRIKHYAVIAGIDTEKLSPHVL 260 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + GA + G + + YT A Sbjct: 261 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 300 >gi|59711055|ref|YP_203831.1| site-specific tyrosine recombinase XerD [Vibrio fischeri ES114] gi|197335240|ref|YP_002155204.1| tyrosine recombinase XerD [Vibrio fischeri MJ11] gi|59479156|gb|AAW84943.1| site-specific tyrosine recombinase [Vibrio fischeri ES114] gi|197316730|gb|ACH66177.1| tyrosine recombinase XerD [Vibrio fischeri MJ11] Length = 298 Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats. Identities = 39/281 (13%), Positives = 98/281 (34%), Gaps = 24/281 (8%) Query: 73 WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESR 126 L+ + + L+ N+ S+ + ++++ D + ++ + + Sbjct: 6 ALMERFLDTMWMERGLSENTLASYRNDLVKLLQWLEDNHYKCASISAMGLNEFQAYLVDK 65 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 ++ +S + L+++R F++ R++ +P + PK + ++E + + Sbjct: 66 EYKQTSRARMLSALRRFFQYLHREKIRGDDPTALLASPKLPQRLPKDLSEEQVDALLNAP 125 Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 + + R E L +GLR ++ ++++ ++ V + + Sbjct: 126 NVEDPLELRDRAMLELLYATGLRVTELVSLTMENVSLRQGVVRVTGKGDKERLVPMGENA 185 Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 + + F + ++M F K A AG++ S H Sbjct: 186 VDWIEQFLTHGRPMLLGEKSSDVVFPSKRAKQMTRQTFWHRIKHYAVIAGIDSDKLSPHV 245 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R AT + GA + G + + YT A Sbjct: 246 LRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER 286 >gi|229174766|ref|ZP_04302290.1| Tyrosine recombinase xerD [Bacillus cereus MM3] gi|228608756|gb|EEK66054.1| Tyrosine recombinase xerD [Bacillus cereus MM3] Length = 296 Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats. Identities = 41/271 (15%), Positives = 101/271 (37%), Gaps = 25/271 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRK---HTPSSAIQFL 137 LA N+ +S+E ++ + + ++T HI + ++ K + + + + Sbjct: 16 KGLAKNTVVSYERDLKSYVKYLQNVEQAKSFHEVTRLHIVNFLQHLKENGKSSKTLARHI 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193 S+R ++ +R+ V +P + +E P+ + + + + ++++ G + + Sbjct: 76 ASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSIDEVEALLQTPKMTSAFGVRDK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252 E L +GLR S+ ++ + + ++ + L + + Sbjct: 136 AMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNKERIIPLGSLATEAIQKYIEKG 195 Query: 253 ETFFI----------NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 + N+ +++ F K A +A + K + H +R AT + Sbjct: 196 RRELMGKKVVDALFLNHHGNRLSRQGFWKILKRLAKEANIEKELTPHTLRHSFATHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331 GA + G + + YT + RL Sbjct: 256 GADLRAVQEMLGHADISTTQIYTH-VSKARL 285 >gi|237749023|ref|ZP_04579503.1| tyrosine recombinase XerD [Oxalobacter formigenes OXCC13] gi|229380385|gb|EEO30476.1| tyrosine recombinase XerD [Oxalobacter formigenes OXCC13] Length = 312 Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats. Identities = 46/291 (15%), Positives = 96/291 (32%), Gaps = 28/291 (9%) Query: 71 LKWLISE-YRKSAHWGSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVES 125 + + + L+ N+ ++ + + D D K+ H+ + Sbjct: 17 VDEFCDTVWLED----GLSKNTLDAYRRDLLLFARWLEKNCPDIDLLKVDQNHLNDYFWA 72 Query: 126 RK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 R +SA + LT ++ ++ +R ++ NPCL ++ K+ + ++ ++ Sbjct: 73 RHAESKATSANRRLTVLKRFYRLQLRLGRISENPCLKLKAAKQAARFPKTLSETQVEALL 132 Query: 184 SFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----------IFSIKTQK 228 G + R E + SGLR S+ + + N + Sbjct: 133 GAPDQEKSLGLRDRAMIELMYASGLRVSELVDLKLVEVGMNEGVLRIIGKGEKTRLVPFG 192 Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 + +E + L + + F+ M F K A K+G+ S Sbjct: 193 EEARVWLERYMQDARSLILAGKMSDYLFVTARGTAMTRQMFWTLIKKYALKSGIHEPLSP 252 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 H +R AT + GA + G + + YT A + + Sbjct: 253 HTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVAQQRLKQLHAMH 303 >gi|262376987|ref|ZP_06070213.1| tyrosine recombinase XerD [Acinetobacter lwoffii SH145] gi|262308025|gb|EEY89162.1| tyrosine recombinase XerD [Acinetobacter lwoffii SH145] Length = 305 Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats. Identities = 45/292 (15%), Positives = 98/292 (33%), Gaps = 21/292 (7%) Query: 57 KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT 116 K+ I +P + P +L +R +++ ++R ++ S Q + Sbjct: 4 KKPRIPAPVQIPDAFSYL-QGFRDYLIAQTVSPHTRNAYLSDLVQCAECL-SKPLPEWNH 61 Query: 117 KHIRSGV---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 I + ++ +P S + L+++R +K+ Q+ + NP + + PK + Sbjct: 62 DDISDVLIALTKQQKSPRSIARCLSALRSFYKFLREQKLRSDNPVAAHKTPKLGRALPKD 121 Query: 174 WTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229 ++ D++ + + R FE L GLR ++ ++ + ++ Sbjct: 122 LSEADVEALIHAPDINTALGLRDRAMFEVLYACGLRVTELINLRLELINLKQGYLRIVGK 181 Query: 230 -GTIITVELPDGFMKLLAMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATK 279 + + + + M+ F K A + Sbjct: 182 GNKERLIPMGQMACEWVEKYLNEARPQLYKTSTDYLFLTQHGGIMSRQNFWYAIKRYALQ 241 Query: 280 AGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AG+ S H +R AT + GA + G + + YT A Sbjct: 242 AGIQSELSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR 293 >gi|26988201|ref|NP_743626.1| site-specific tyrosine recombinase XerD [Pseudomonas putida KT2440] gi|148549459|ref|YP_001269561.1| site-specific tyrosine recombinase XerD [Pseudomonas putida F1] gi|34222835|sp|Q88MV0|XERD_PSEPK RecName: Full=Tyrosine recombinase xerD gi|24982938|gb|AAN67090.1|AE016337_13 integrase/recombinase XerD [Pseudomonas putida KT2440] gi|148513517|gb|ABQ80377.1| tyrosine recombinase XerD subunit [Pseudomonas putida F1] Length = 298 Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats. Identities = 54/281 (19%), Positives = 101/281 (35%), Gaps = 24/281 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESR---K 127 LI ++ + L+ N+R+S+ S + I + R Sbjct: 8 LIDQFLDALWLEKGLSDNTRVSYRSDLALFNGWLQEHSVSLPDAGRDLILDHLAWRLDQG 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + P S +FL+ +R F++ +R++ VAI+P L V+ P+ + ++ D++ Sbjct: 68 YKPRSTARFLSGLRGFFRYLLREKLVAIDPTLQVDMPQLGKPLPKSLSEADVEALLQAPD 127 Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 G + R E L GLR ++ + + ++ V + + + Sbjct: 128 LGEAIGQRDRAMLEVLYACGLRVTELVSLTLDQVNLRQGVLRVMGKGSKERLVPMGEEAV 187 Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 L F + ++M F K A AG++K S H +R Sbjct: 188 VWLERYQRDGRAELLNGRPSDVLFPSQRGEQMTRQTFWHRIKHHARVAGIDKPLSPHTLR 247 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 AT + GA + G + + YT A + RL Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-KARL 287 >gi|269140272|ref|YP_003296973.1| site-specific tyrosine recombinase [Edwardsiella tarda EIB202] gi|267985933|gb|ACY85762.1| site-specific tyrosine recombinase [Edwardsiella tarda EIB202] gi|304560099|gb|ADM42763.1| Site-specific recombinase XerD [Edwardsiella tarda FL6-60] Length = 299 Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats. Identities = 44/281 (15%), Positives = 95/281 (33%), Gaps = 24/281 (8%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESR 126 LI ++ + +LA N+ S+ + D +T H + Sbjct: 7 ALIEQFLDALWLEKNLAENTLASYRQDLRTLAEWLAYHDLTLLTAAHGDLQDFFAQRMDG 66 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + SS+ + L+++R +++ R++ + +P + PK + ++ + Sbjct: 67 GYKASSSARLLSALRRCYQYLYREKLRSDDPSALLASPKLPQRLPKDLSEAQVDALLQAP 126 Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 + + + + E L +GLR S+ + + ++ V L + Sbjct: 127 AIDTPLELRDKAMLELLYATGLRVSELVGLAQEDISLRQGVVRVIGKGNKERLVPLGEEA 186 Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 + + + F +N ++M F K A AG++ S H Sbjct: 187 IYWIEYYLEYGRPWLVNGQTVAALFPSNRARQMTRQTFWHRIKHYAVLAGIDAERLSPHV 246 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R AT + GA + G + + YT A Sbjct: 247 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 287 >gi|256847147|ref|ZP_05552593.1| tyrosine recombinase XerD [Lactobacillus coleohominis 101-4-CHN] gi|256715811|gb|EEU30786.1| tyrosine recombinase XerD [Lactobacillus coleohominis 101-4-CHN] Length = 296 Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats. Identities = 40/271 (14%), Positives = 95/271 (35%), Gaps = 25/271 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYR---KITTKHIR---SGVESRKHTPSSAIQFLT 138 L+ N+ S+++ + + I + + + + + ++ + ++ Sbjct: 16 RGLSNNTIQSYQNDLKKAAEYFTSQNLSSWGDIDRYAVLNLLAHLTNLGQSRTTIGRQVS 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194 S+R +++ +RQ V +P V PK + T++++++ + G + R Sbjct: 76 SLRQFYQYLLRQHRVMNDPMALVTIPKGQRHLPTVLTQDEVRRMLAVPDTGKKMGIRDRA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253 E + +G+R S+ + L ++ K + + + L Sbjct: 136 ILEVMYATGMRVSELTNLRLNDLHLDVHLVQPRGKGDKERIIPIGEVAESWLNRYLHSVR 195 Query: 254 -----------TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 F+N +++ K A A ++K + H +R AT + Sbjct: 196 APQLANKPASDFVFLNARAKQLTRQAIWQLIKKTAQAAKIDKDVTPHTMRHSFATHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331 GA + G + + YT + RL Sbjct: 256 GADLRVVQELLGHSDITTTQIYTH-VSQKRL 285 >gi|313672931|ref|YP_004051042.1| integrase family protein [Calditerrivibrio nitroreducens DSM 19672] gi|312939687|gb|ADR18879.1| integrase family protein [Calditerrivibrio nitroreducens DSM 19672] Length = 297 Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats. Identities = 41/276 (14%), Positives = 96/276 (34%), Gaps = 18/276 (6%) Query: 72 KWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 + L+ ++ + SL+ NS +++ ++ R + D++ S + + + Sbjct: 5 EELVKRFQHYMKYDLSLSENSIEAYKRDLMELTRFTKDYNLTPSDLVSYMSHLRKKGLSI 64 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-- 188 S ++ L+ + + + ++++ NP S+ +PK+ + + E+++ + + Sbjct: 65 ESILRNLSGISAFYDFLIQEKIFDKNPVASISKPKKWEKLPKFLNFEEVEALINAPDKST 124 Query: 189 --GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFMKLL 245 G + + + +G+R S+ + + K + + L Sbjct: 125 PTGYRDNIILKTFYSTGMRVSELVKCKTSDIDFKRGIVSVVGKGSKQRFLPIYQSLQDEL 184 Query: 246 AMTPIGKETFFINNDKQ----------KMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293 + +FI + + K KAG+ K S H +R Sbjct: 185 KQYIEVRHRYFIKEKDNGFLFLNKNSAPLTRVYCWMLIKKYCKKAGIKKDISPHTLRHSF 244 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT GA + G + E YT D Sbjct: 245 ATHLLTNGADLRTIQLLLGHSDIATTEIYTHITDNK 280 >gi|319651425|ref|ZP_08005554.1| tyrosine recombinase [Bacillus sp. 2_A_57_CT2] gi|317396956|gb|EFV77665.1| tyrosine recombinase [Bacillus sp. 2_A_57_CT2] Length = 297 Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats. Identities = 41/270 (15%), Positives = 93/270 (34%), Gaps = 25/270 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVESRKHTPSSAI---QFL 137 LA N+ +S+E ++ + I + K S+ + + Sbjct: 16 KGLAKNTIVSYERDLKSYLKYLKSEEKISSLESVQRTQIVQFLGFLKKQGKSSKTLARHI 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPR 193 S+R ++ +R++ V +P + +E P+ + + +++ + G + + Sbjct: 76 ASIRAFHQFLLREKAVGHDPSVHIETPQMERSLPKVLNMQEVETLLDFPEIKDHFGLRDK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT---- 248 E L +G+R S+ + + + ++ V + + L Sbjct: 136 AMLELLYATGIRVSELIGLNIGDVHLTMGFVRCIGKGNKERIVPIGKTASEALEKYLNEG 195 Query: 249 -------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 E F+N+ ++++ F K A +AG+ K + H +R AT + Sbjct: 196 RGKFAPKKHKDEALFLNHHGKRLSRQGFWKILKRLAQEAGIEKELTPHTLRHSFATHLLE 255 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRI 329 GA + G + + YT Sbjct: 256 NGADLRAVQEMLGHADISTTQIYTHVTKTR 285 >gi|256003998|ref|ZP_05428984.1| tyrosine recombinase XerD [Clostridium thermocellum DSM 2360] gi|281417393|ref|ZP_06248413.1| tyrosine recombinase XerD [Clostridium thermocellum JW20] gi|255992126|gb|EEU02222.1| tyrosine recombinase XerD [Clostridium thermocellum DSM 2360] gi|281408795|gb|EFB39053.1| tyrosine recombinase XerD [Clostridium thermocellum JW20] gi|316940575|gb|ADU74609.1| tyrosine recombinase XerD [Clostridium thermocellum DSM 1313] Length = 294 Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats. Identities = 44/281 (15%), Positives = 106/281 (37%), Gaps = 23/281 (8%) Query: 72 KWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKI------TTKHIRSGVE 124 + L+ + L++N+ S++ +Q I D + I T ++ Sbjct: 2 EELVLHFLDFLKNDKRLSLNTLQSYKRDIEQYITYLKDMKIQNIANTNKTTVIAYLLHLQ 61 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ---- 180 + S+ + L S+R +++ ++ ++ +P ++E PK + + + + ++++ Sbjct: 62 KKGRATSTISRNLASIRSFYQYLTKKGIISQDPTENLESPKVEKKLPQILSTKEVELLLE 121 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 Q K +G + + E L +G+R S+ + + + I+ K V + Sbjct: 122 QPKCDDLKGYRDKAMLELLYATGIRVSELISLDLDDVNLEMQYIRCNKGARERIVPIGSV 181 Query: 241 FMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288 + L ++ F+N + +++ F K +A +NK + H Sbjct: 182 SVNALQEYLTKSRNLLIQRPDEKALFVNVNGKRLTRQGFWKIIKQYKNQAKINKDITPHT 241 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R A + GA + G + + Y + A Sbjct: 242 LRHSFAAHLLENGADLRSIQEMLGHSDISSTQIYAQLAKNR 282 >gi|295398591|ref|ZP_06808623.1| tyrosine recombinase XerD [Aerococcus viridans ATCC 11563] gi|294973192|gb|EFG48987.1| tyrosine recombinase XerD [Aerococcus viridans ATCC 11563] Length = 309 Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats. Identities = 44/287 (15%), Positives = 96/287 (33%), Gaps = 26/287 (9%) Query: 64 PRKKPTTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKI------TT 116 + L +I ++ + LA NS IS++ ++++ K+ T Sbjct: 6 EERVSMKLTEVIEDFLNTMRVEEGLAENSIISYKQELNRMMTYLNRQGIEKVQVISQDTV 65 Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 ++ S+ +++++R F++ + NP + PK+ T Sbjct: 66 LDHLKWMDEDHLATSTRSHYVSTLRHFFRYLKLDGVIEDNPMEKISLPKKTQHLPAVLTL 125 Query: 177 EDMQQFK----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGT 231 +++ + G + R E L +G+R S+ ++ + + F K G Sbjct: 126 DEVDRILATPDITKPLGLRDRTLLETLYSTGMRVSEIIHIKLEDIHLDMGFIQTIGKGGK 185 Query: 232 IITVELPDGFMKLLAMT------------PIGKETFFINNDKQKMNATQFSIWFKAKATK 279 V + + + + F+NN + ++ K Sbjct: 186 ERLVPIGEMAEDWINKYLTEGRPKLVKDEDETQGYLFVNNRGKPLSRQGVWKNLKKMVMM 245 Query: 280 AGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 A + + S H +R AT + GA + G + + YT Sbjct: 246 AHITKDISPHTLRHSFATHLLENGADLRVVQELLGHSDISTTQIYTH 292 >gi|170723312|ref|YP_001751000.1| site-specific tyrosine recombinase XerD [Pseudomonas putida W619] gi|169761315|gb|ACA74631.1| tyrosine recombinase XerD [Pseudomonas putida W619] Length = 298 Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats. Identities = 53/281 (18%), Positives = 101/281 (35%), Gaps = 24/281 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESR---K 127 LI ++ + L+ N+R+S+ S D + I + R Sbjct: 8 LIDQFLDALWLEKGLSDNTRVSYRSDLALFNGWLQDHGLALPAAGRELILDHLAWRLDQG 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + P S +FL+ +R F++ +R++ +A++P L +E P+ + ++ D+ Sbjct: 68 YKPRSTARFLSGLRGFFRYLLREKLIAVDPTLQIEMPQLGKPLPKSLSEADVDALLQAPD 127 Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 G + R E L GLR ++ + + ++ V + + + Sbjct: 128 LGEAIGQRDRAMLEVLYACGLRVTELVSLALDQVNLRQGVLRVMGKGSKERLVPMGEEAV 187 Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 L F + ++M F K A AG++K S H +R Sbjct: 188 LWLERYLRDGRVELLNGRPSDVLFPSLRGEQMTRQTFWHRIKHHARIAGIDKPLSPHTLR 247 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 AT + GA + G + + YT A + RL Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-KARL 287 >gi|15895336|ref|NP_348685.1| XerD family integrase/recombinase [Clostridium acetobutylicum ATCC 824] gi|34222991|sp|Q97HE5|XERD_CLOAB RecName: Full=Tyrosine recombinase xerD gi|15025053|gb|AAK80025.1|AE007709_9 Integrase/recombinase XerD family [Clostridium acetobutylicum ATCC 824] gi|325509481|gb|ADZ21117.1| Integrase/recombinase XerD family [Clostridium acetobutylicum EA 2018] Length = 292 Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats. Identities = 45/279 (16%), Positives = 100/279 (35%), Gaps = 20/279 (7%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTPS 131 LI +Y +L++N+ ++ + + R++ I S V+ + Sbjct: 4 LIEQYFAEIRKKNLSLNTIDAYRRDIKKFHEFLDEKGEKLREVDVITIMSYVQYLQKNGR 63 Query: 132 ---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---- 184 S ++ + S+R FK+ + + NP E PK + T E++++ Sbjct: 64 ANSSIVRNIVSIRNFFKYLEIKGIMDDNPVTQYEMPKIRRNFPDILTIEEVEKLLMGPDG 123 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KTGTIITVELPDGFMK 243 +G + + E + +G++ ++ + + + IK + + + +K Sbjct: 124 NTDKGIRDKAMLEIMYATGMKVTELLNLTIYDINLKLSYIKCRGIKNKERIIPMGSYAVK 183 Query: 244 LLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293 L + + F N KM F K A ++G+ K +A+ +R Sbjct: 184 CLEIYLKVRTKLNVQNIDYLFFNLQGDKMTRQGFWKIIKQYAQESGIKKKINAYTLRHSF 243 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 A GA + G + + Y+ + R+ Sbjct: 244 AVHLLQNGADIKTIQELLGHSDMATTQIYSGMYRKTRIA 282 >gi|257784507|ref|YP_003179724.1| integrase family protein [Atopobium parvulum DSM 20469] gi|257473014|gb|ACV51133.1| integrase family protein [Atopobium parvulum DSM 20469] Length = 305 Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats. Identities = 51/291 (17%), Positives = 111/291 (38%), Gaps = 28/291 (9%) Query: 75 ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRK---H 128 + ++ + +L+ N+ S+++ + + D ++ K++R + K + Sbjct: 11 VEQFIEYLHKVRNLSENTLRSYQTDLLSFAQWCSRENVDLTQVDHKNLRLYLAYLKQAQY 70 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187 + + + L+++R +KW R++ +A +P L++ P+ T D+ + Sbjct: 71 SAKTLNRHLSALRGFYKWMQREKLIATDPALALSNPRAPRNLPHTMTDSDVNRLLESCDV 130 Query: 188 ---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMK 243 G + R EFL +G R S+ ++ + +++ K V L + ++ Sbjct: 131 STAAGLRDRAFLEFLYATGARISEVATLRLEQVDLQNGTVRLFGKGSKERIVPLYESAIE 190 Query: 244 LLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAH 287 L FI+ M+A F + T AG++ S H Sbjct: 191 WLKKYLRSSRPTLLLKDKTGRVHSALFISVRGNNMSADSLRKVFSSYLTAAGLDSSLSPH 250 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSR 337 +R AT GA + G +++ + YT DR++ K + Sbjct: 251 AMRHTYATELLGGGADLRIVQELLGHESLSTTQVYTHLSVDRLKEAAKAAH 301 >gi|292487142|ref|YP_003530012.1| tyrosine recombinase xerD [Erwinia amylovora CFBP1430] gi|292900477|ref|YP_003539846.1| integrase/recombinase [Erwinia amylovora ATCC 49946] gi|291200325|emb|CBJ47453.1| integrase/recombinase [Erwinia amylovora ATCC 49946] gi|291552559|emb|CBA19604.1| Tyrosine recombinase xerD [Erwinia amylovora CFBP1430] gi|312171246|emb|CBX79505.1| Tyrosine recombinase xerD [Erwinia amylovora ATCC BAA-2158] Length = 297 Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats. Identities = 43/281 (15%), Positives = 94/281 (33%), Gaps = 24/281 (8%) Query: 73 WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESR 126 LI ++ + +LA N+ S+ + + + + Sbjct: 5 DLIEQFLDALWIERNLAQNTVDSYRLDLRSLGDWLAHQQLSLLNVEVANLQEFLAQRLEG 64 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + SS+ + L++MR LF++ R++ +P + PK + ++ +++ Sbjct: 65 GYKASSSARLLSAMRRLFQYLYREKLRDDDPSALLSSPKLPQRLPKDLSEAQVERLLQAP 124 Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 + + E L +GLR ++ + + ++ V + + Sbjct: 125 CLDLPIELRDKAMLELLYATGLRVTELVGLTLSDISLRQGVVRVMGKGNKERLVPMGEEA 184 Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 + + + F +N ++M F K AT AG++ S H Sbjct: 185 VHWIEQFIEYGRPWLLNGQTIDVLFPSNRAKQMTRQTFWHRIKHYATLAGIDSEKLSPHV 244 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R AT + GA + G + + YT A Sbjct: 245 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 285 >gi|125973194|ref|YP_001037104.1| tyrosine recombinase XerD subunit [Clostridium thermocellum ATCC 27405] gi|125713419|gb|ABN51911.1| tyrosine recombinase XerD subunit [Clostridium thermocellum ATCC 27405] Length = 296 Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats. Identities = 44/281 (15%), Positives = 106/281 (37%), Gaps = 23/281 (8%) Query: 72 KWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKI------TTKHIRSGVE 124 + L+ + L++N+ S++ +Q I D + I T ++ Sbjct: 4 EELVLHFLDFLKNDKRLSLNTLQSYKRDIEQYITYLKDMKIQNIANTNKTTVIAYLLHLQ 63 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ---- 180 + S+ + L S+R +++ ++ ++ +P ++E PK + + + + ++++ Sbjct: 64 KKGRATSTISRNLASIRSFYQYLTKKGIISQDPTENLESPKVEKKLPQILSTKEVELLLE 123 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 Q K +G + + E L +G+R S+ + + + I+ K V + Sbjct: 124 QPKCDDLKGYRDKAMLELLYATGIRVSELISLDLDDVNLEMQYIRCNKGARERIVPIGSV 183 Query: 241 FMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288 + L ++ F+N + +++ F K +A +NK + H Sbjct: 184 SVNALQEYLTKSRNLLIQRPDEKALFVNVNGKRLTRQGFWKIIKQYKNQAKINKDITPHT 243 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R A + GA + G + + Y + A Sbjct: 244 LRHSFAAHLLENGADLRSIQEMLGHSDISSTQIYAQLAKNR 284 >gi|312900737|ref|ZP_07760034.1| tyrosine recombinase XerD [Enterococcus faecalis TX0470] gi|295112966|emb|CBL31603.1| tyrosine recombinase XerD subunit [Enterococcus sp. 7L76] gi|311292218|gb|EFQ70774.1| tyrosine recombinase XerD [Enterococcus faecalis TX0470] gi|315169704|gb|EFU13721.1| tyrosine recombinase XerD [Enterococcus faecalis TX1342] Length = 296 Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats. Identities = 43/287 (14%), Positives = 96/287 (33%), Gaps = 27/287 (9%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRK 127 + L+ Y L+ N+R S+E + + G + ++ I ++S Sbjct: 3 EQLVD-YLHYLQIERGLSNNTRRSYERDLKKYVAFLQEQGLHSWDEVDRYMITEFLQSLH 61 Query: 128 ---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 +S I+ ++S+R ++ ++ NP ++ PK+ + + +++ + Sbjct: 62 EEQQASASVIRMISSLRGFHQFLRQERLSEHNPMQHIDSPKKVQKLPSTLSVDEVTRLIE 121 Query: 185 FW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------------NNIFSIKTQK 228 G + R E + +GLR S+ + L + I Sbjct: 122 APDTSKPLGMRNRAILEVMYATGLRVSELIEIKLGDLHLSIGLLQTIGKGDKERIIPLGD 181 Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286 + L + F+N+ + ++ K +A + K + Sbjct: 182 YAIQWIERYMNEARPQLIKNHPNETHLFVNHHGEPLSRQGIWKNLKQIVREAQIEKNITP 241 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 H +R AT + GA + G + + YT + R+ Sbjct: 242 HTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITKQ-RMAD 287 >gi|261820181|ref|YP_003258287.1| site-specific tyrosine recombinase XerD [Pectobacterium wasabiae WPP163] gi|261604194|gb|ACX86680.1| tyrosine recombinase XerD [Pectobacterium wasabiae WPP163] Length = 299 Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats. Identities = 43/281 (15%), Positives = 94/281 (33%), Gaps = 24/281 (8%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVESR 126 LI ++ + +LA N+ S+ + D + + + + Sbjct: 7 ALIEQFLDALWLERNLAENTLASYRLDLRTLAEWLAHRDNDFLQVQALDLQAFLADRVDG 66 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 + +S+ + L++MR F++ R++ + +P + PK + ++ + Sbjct: 67 GYKATSSARLLSAMRRFFQYLYREKLRSDDPSAVLSSPKLPLRLPKDLSEAQVGALLDAP 126 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241 + + E L +GLR S+ + + ++ K V L + Sbjct: 127 SIEQPLELRDKAMLEVLYATGLRVSELVGLTMSDVSLRQGVVRVLGKGNKERLVPLGEEA 186 Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 + + + F +N ++M F K A +A ++ S H Sbjct: 187 VYWIEYYLEHGRPWLLNGQTLDVLFPSNRARQMTRQTFWHRIKHYAVQASIDSEKLSPHV 246 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R AT + GA + G + + YT A Sbjct: 247 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 287 >gi|228992829|ref|ZP_04152754.1| Tyrosine recombinase xerD [Bacillus pseudomycoides DSM 12442] gi|228998874|ref|ZP_04158459.1| Tyrosine recombinase xerD [Bacillus mycoides Rock3-17] gi|228760890|gb|EEM09851.1| Tyrosine recombinase xerD [Bacillus mycoides Rock3-17] gi|228766878|gb|EEM15516.1| Tyrosine recombinase xerD [Bacillus pseudomycoides DSM 12442] Length = 296 Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats. Identities = 42/271 (15%), Positives = 100/271 (36%), Gaps = 25/271 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRK---HTPSSAIQFL 137 LA N+ +S+E ++ + ++T HI + ++ K + + + + Sbjct: 16 KGLAKNTVVSYERDLKSYVKYLQHVEQIKTFHEVTRIHIVNFLQYLKENGKSSKTLARHI 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193 S+R ++ +R+ V +P + +E P+ + + + + +++ E G + + Sbjct: 76 ASIRSFHQFLLRERVVEHDPSVHIETPQGERKLPKVLSVSEVEALLQTPKETSAFGIRDK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252 E L +GLR S+ ++ + + ++ + L + + Sbjct: 136 AMLELLYATGLRVSELIALNLEDVHLTMGFVRCVGKGNKERIIPLGSLATEAIQRYIEKG 195 Query: 253 ETFFI----------NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 + N+ +++ F K A +A + K + H +R AT + Sbjct: 196 RKELMGKKTVDALFLNHHGNRLSRQGFWKILKRLAKEANIEKELTPHTLRHSFATHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331 GA + G + + YT + RL Sbjct: 256 GADLRAVQEMLGHADISTTQIYTH-VSKARL 285 >gi|188588813|ref|YP_001921530.1| phage integrase family protein [Clostridium botulinum E3 str. Alaska E43] gi|188499094|gb|ACD52230.1| phage integrase family protein [Clostridium botulinum E3 str. Alaska E43] Length = 382 Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats. Identities = 41/374 (10%), Positives = 117/374 (31%), Gaps = 45/374 (12%) Query: 15 RTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 R + + YYF G G+R R+ T A + + + + Sbjct: 6 RKKGNRWYYYFEAGRVNGKRKRIERKGGDTKKEAQQALRMALNEFNNTGSYVNETNMSFS 65 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 + + + N++ +++S+ + + G + +++ ++ + + Sbjct: 66 DFLDYWFDEYVMKNCKYNTQQTYKSFININLKPNLGIYKIKQLNYAALQEFLNKQYAHGY 125 Query: 132 SAIQFLTSMRVLFKWAVRQ-----EYVAINPCLSVERPKRKTEGIRP--WTKEDMQQFKS 184 S L +R + ++ +++ +NP ++ P+ + E+ + Sbjct: 126 SKN-TLARLRSIISHSLEMAVSPYQFIKVNPAKNLTLPRFDNIAKENIVISIENFNKIIG 184 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-----------------TQ 227 + G+ + + +G+R + C + +I+ + Sbjct: 185 RFPCGTSFYIPLQIAFNTGMRVGEVCGLTWDCVDFEKKTIRIEKILIFKTKQGYEFSTPK 244 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--------------NATQFSIWF 273 G+I T+ + D + +L +E N T Sbjct: 245 TKGSIRTISIGDTLINILKTHKNWQEENKKNYGSYYNDNNFVCTKENGSFVTMTSLRYLS 304 Query: 274 KAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLG 332 + + + + H +R AT+ + GA ++ G Y+ ++ Sbjct: 305 RIINMELQIKFNFHSLRHTHATMLLEGGANIKDIQDRLGHSKFSTTMDLYSHVT--AKMQ 362 Query: 333 IKNSRRISSVVDSD 346 + ++++ + Sbjct: 363 NSTVNILENILNQE 376 >gi|301299326|ref|ZP_07205611.1| tyrosine recombinase XerD [Lactobacillus salivarius ACS-116-V-Col5a] gi|300853066|gb|EFK80665.1| tyrosine recombinase XerD [Lactobacillus salivarius ACS-116-V-Col5a] Length = 290 Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats. Identities = 50/281 (17%), Positives = 110/281 (39%), Gaps = 25/281 (8%) Query: 77 EYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGVESRKH---T 129 +Y L+ N+ S+ + + + +++ + I + ++S K+ Sbjct: 2 DYLHYLKVERGLSENTINSYGIDLKLFLEYLRENEIPSFKQVNKEVIVNYMQSEKNNNKA 61 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-- 187 SS ++ ++S+R F++ +++ + +P L ++ PK+K + TKE++++ + Sbjct: 62 NSSILRSVSSLRKFFQYLAQEKIIEKDPMLLIDTPKKKQHLPQVLTKEEVEKLLRSPNTG 121 Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKL 244 G + R E + +GLR S+ ++ L + + K V + D +K Sbjct: 122 QVLGLRDRAMLELMYATGLRISEIINLKLEDLHLTMGTLQTLGKGHKERIVPVGDEAIKW 181 Query: 245 LAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292 + F+N + KA+ KAG+ K + H +R Sbjct: 182 VNRYLEEARPKLLKQKRSNYLFLNFHGNNLTRQGVWKNLKAEVRKAGIQKNITPHTLRHS 241 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 AT + GA + G + + YT ++ +L Sbjct: 242 FATHILENGADLRIVQELLGHADISTTQIYTHLSN-KQLAD 281 >gi|253988692|ref|YP_003040048.1| site-specific tyrosine recombinase XerD [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211637984|emb|CAR66612.1| tyrosine recombinase xerd [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780142|emb|CAQ83303.1| tyrosine recombinase xerd [Photorhabdus asymbiotica] Length = 303 Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats. Identities = 52/287 (18%), Positives = 101/287 (35%), Gaps = 25/287 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GD--FDYRKITTKHIRSGVESRK 127 LI ++ + LA N+ IS+ + G + I + + Sbjct: 12 LIEQFLDAIWLEHDLAENTLISYRLDLQALDNWLVNYGHDLLSVQSIDLQSFLAERVDGG 71 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + SS+ + L++MR LF++ R++ A +P + PK + +++ ++ + Sbjct: 72 YKASSSARLLSAMRQLFQYFYREKMRADDPTALLSAPKLPKRLPKDLSEKQVEALLNAPC 131 Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 + + E L GLR S+ + + ++ V L + + Sbjct: 132 TDQPVELRDKAMLEVLYACGLRVSELVGLTLSDVSLRQGVVRVIGKGNKERLVPLGEEAI 191 Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289 L F +N ++M F K A AG++ S H + Sbjct: 192 YWLENYIEYGRDGLLNGATLDVLFPSNRGRQMTRQTFWYRIKHYALLAGIDTERLSPHVL 251 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKN 335 R AT + GA + G + + YT A +R+RL + Sbjct: 252 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRLLHQQ 298 >gi|229545847|ref|ZP_04434572.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis TX1322] gi|256853102|ref|ZP_05558472.1| phage integrase [Enterococcus faecalis T8] gi|307292019|ref|ZP_07571888.1| tyrosine recombinase XerD [Enterococcus faecalis TX0411] gi|229309046|gb|EEN75033.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis TX1322] gi|256711561|gb|EEU26599.1| phage integrase [Enterococcus faecalis T8] gi|306497017|gb|EFM66565.1| tyrosine recombinase XerD [Enterococcus faecalis TX0411] gi|315029408|gb|EFT41340.1| tyrosine recombinase XerD [Enterococcus faecalis TX4000] Length = 296 Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats. Identities = 43/287 (14%), Positives = 97/287 (33%), Gaps = 27/287 (9%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRK 127 + L+ Y L+ N+R S+E + + G + ++ I ++S Sbjct: 3 EQLVD-YLHYLQIERGLSNNTRRSYERDLKKYVAFLQEQGLHSWDEVDRYMITEFLQSLH 61 Query: 128 ---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQ 180 +S I+ ++S+R ++ ++ NP ++ PK+ + + ++ ++ Sbjct: 62 EEQQASASVIRMISSLRGFHQFLRQERLSEHNPMQHIDSPKKIQKLPSTLSVDEVTRLIE 121 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------------NNIFSIKTQK 228 + G + R E + +GLR S+ + L + I Sbjct: 122 TPDTSKPLGMRNRAILEVMYATGLRVSELIEIKLGDLHLSIGLLQTIGKGDKERIIPLGD 181 Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286 + L + F+N+ + ++ K +A + K + Sbjct: 182 YAIQWIERYMNEARPQLIKNHPNETHLFVNHHGEPLSRQGIWKNLKQIVREAQIEKNITP 241 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 H +R AT + GA + G + + YT + R+ Sbjct: 242 HTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITKQ-RMAD 287 >gi|313202049|ref|YP_004040707.1| tyrosine recombinase xerd [Methylovorus sp. MP688] gi|312441365|gb|ADQ85471.1| tyrosine recombinase XerD [Methylovorus sp. MP688] Length = 298 Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats. Identities = 50/283 (17%), Positives = 95/283 (33%), Gaps = 24/283 (8%) Query: 72 KWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRK 127 L+ + LA N+ S+ + ++ + R Sbjct: 6 AALLDSFVDHLWLEDGLARNTLESYRRDLALFAEWLWSEHAKLLNQADQGDLQQYLAFRF 65 Query: 128 HT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 T P S + + S+R +++ +R+ ++++P L ++ PK + ++++ + Sbjct: 66 PTSKPRSVSRLIASLRRFYRYGLREGQISVDPTLLIDTPKLPRSLPKSLNEDEVVALLNA 125 Query: 186 WSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDG 240 G + R E L GLR S+ + N ++ V L + Sbjct: 126 PDIAQAIGLRDRAMLETLYACGLRVSELVGLRYTEVSLNEGVVRVTGKGSKTRLVPLGEE 185 Query: 241 FMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288 + L F+ + M F K A +AG++K S H Sbjct: 186 SVDWLLRYAREGRPQILQQRVSDSLFVTQRGEAMTRQAFWYLIKRYALQAGIHKPLSPHV 245 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +R AT + GA + G + + YT A R RL Sbjct: 246 LRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVA-RERL 287 >gi|226945992|ref|YP_002801065.1| site-specific tyrosine recombinase XerD [Azotobacter vinelandii DJ] gi|226720919|gb|ACO80090.1| Site-specific tyrosine recombinase [Azotobacter vinelandii DJ] Length = 298 Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats. Identities = 54/290 (18%), Positives = 105/290 (36%), Gaps = 24/290 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESR---KH 128 I + ++ L+ ++R ++ S + + ++ + I + R + Sbjct: 9 IERFLEALWLEKGLSAHTRAAYRSDLELFNGWLCERGLALVEVGRELILDHLAWRVDAGY 68 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-- 186 S +FL+ +R F++ +R+ +A +P L VE P+ + ++ D++ + Sbjct: 69 KARSTARFLSGLRGFFRYLLREGVIAGDPTLQVELPQLGRPLPKSLSEADVEALLAAPED 128 Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243 G + R E L GLR S+ ++ L ++ V L + + Sbjct: 129 DDPLGLRDRAMLEVLYACGLRVSELVGLRLEQLNLRQGVVRVFGKGSKERLVPLGEEAIA 188 Query: 244 LLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRK 291 L + F + ++M F K A AG+ KS H +R Sbjct: 189 WLERYLVEARPLLLGGRPSDVLFPSLRGEQMTRQTFWHRIKHHARLAGIGKSLSPHTLRH 248 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 AT + GA + G + + YT A R RL ++R Sbjct: 249 AFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHIA-RARLQELHARHHPR 297 >gi|255532069|ref|YP_003092441.1| tyrosine recombinase XerD [Pedobacter heparinus DSM 2366] gi|255345053|gb|ACU04379.1| tyrosine recombinase XerD [Pedobacter heparinus DSM 2366] Length = 299 Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats. Identities = 44/265 (16%), Positives = 96/265 (36%), Gaps = 25/265 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRS---GVESRKHTPSSAIQFL 137 SL+ NS ++ +++ + D ++IT ++ + PS+ + + Sbjct: 18 RSLSGNSIEAYLGDLNKLSQYFESVDQTPQVKEITGDDLKHFVSWINELGMLPSTQARVV 77 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPR 193 + ++ F + + +E + +P +E P++ + +++ EG + + Sbjct: 78 SGLKAFFSFLMLEEIITTDPSALLESPRQVKHLPDTLSIQEINGMIGAIDASKPEGMRNK 137 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT---- 248 E L GLR S+ + + I+ V + +K + + Sbjct: 138 AILETLYGCGLRVSELSNLKISDVFEENEFIRIFGKGNKERLVPIGQTALKYINIYLRES 197 Query: 249 -------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISAD 299 ++ F+N +++ KA A K+G+ KS H R AT + Sbjct: 198 RVHVPIKKGHEDYIFLNRSGTRLSRISVFSIIKALALKSGIKKSISPHTFRHSFATHLIE 257 Query: 300 AGATAHELMATYGWKTVDQAETYTK 324 GA + G ++ E YT Sbjct: 258 GGADLRAVQEMLGHSSITTTEIYTH 282 >gi|160915175|ref|ZP_02077388.1| hypothetical protein EUBDOL_01183 [Eubacterium dolichum DSM 3991] gi|158432974|gb|EDP11263.1| hypothetical protein EUBDOL_01183 [Eubacterium dolichum DSM 3991] Length = 302 Score = 143 bits (360), Expect = 5e-32, Method: Composition-based stats. Identities = 38/296 (12%), Positives = 96/296 (32%), Gaps = 30/296 (10%) Query: 72 KWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYR---KITTKHIRSGVESRK 127 + L+ + + S + +++ +++ + I + + + + + + Sbjct: 2 EDLLERFLQYIMQVNSGSEHTKAAYQRDIQEFIMYIREQAIDSFEDVDRIVVMNYIAFLR 61 Query: 128 HTP---------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 ++ + L+S+R + + +A NP + + PK ++ Sbjct: 62 DKGGKGYSGMKNTTIARKLSSLRSFYHYLNEYIGIANNPFVYFKTPKIAKRIPEFLFYDE 121 Query: 179 MQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTII 233 ++ F + +G + R FE + GLR S++ + + K Sbjct: 122 IEIFLESFDLNSMQGLRDRTMFELMYACGLRVSEAVSLRTRDVDFADNILHIHGKGDKER 181 Query: 234 TVELPDGFMKLLAMTPIGKETFF---------INNDKQKMNATQFSIWFKAKATKAGVNK 284 V D +LL + +N +K+ K ++ Sbjct: 182 LVPFYDLAKELLVSYIKDVRDVWATSDETALFVNQRGKKLTTRGVQYLMNKAVEKCDLHV 241 Query: 285 S--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337 H R AT D GA + G ++ + Y + +R++ +++ Sbjct: 242 HVHPHMFRHSFATHLLDNGADLRYVQELLGHSSLSTTQIYVHVSKERLKAAYEHAH 297 >gi|303241573|ref|ZP_07328073.1| tyrosine recombinase XerD [Acetivibrio cellulolyticus CD2] gi|302590891|gb|EFL60639.1| tyrosine recombinase XerD [Acetivibrio cellulolyticus CD2] Length = 294 Score = 143 bits (360), Expect = 5e-32, Method: Composition-based stats. Identities = 44/281 (15%), Positives = 104/281 (37%), Gaps = 23/281 (8%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKI------TTKHIRSGVE 124 + L+ ++ L++N+ S+ +Q I + + I T ++ Sbjct: 2 EDLVLKFLTFLEKDKRLSLNTLQSYRRDIEQYITYLNEIKLQNISNTNKTTVITYLLHLQ 61 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----Q 180 + S+ + L S+R +++ + ++ +P +E PK + + + + +++ Sbjct: 62 KKGRATSTISRNLASIRSFYQYLTKNGVISGDPTEELESPKVEKKLPQILSTKEVELLLD 121 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 Q K +G + + E L +G+R S+ V + ++ IK K + + Sbjct: 122 QPKCDDLKGFRDKAMLELLYATGIRVSELICLNVLDINLDMGFIKCNKGTRERMIPIGSL 181 Query: 241 FMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288 ++ L ++ F+N + +++ F K A +NK + H Sbjct: 182 SIQALNEYLAKSRNLLIQRSDEKALFVNVNGKRLTRQGFWKIIKQYKNLAKINKDITPHT 241 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R A + GA + G + + Y + A Sbjct: 242 LRHSFAAHLLENGADLRSIQEMLGHSDISSTQVYAQIAKNR 282 >gi|311030726|ref|ZP_07708816.1| site-specific tyrosine recombinase XerD [Bacillus sp. m3-13] Length = 296 Score = 143 bits (360), Expect = 5e-32, Method: Composition-based stats. Identities = 38/269 (14%), Positives = 91/269 (33%), Gaps = 24/269 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVESR---KHTPSSAIQFL 137 LA N+ +S+E + ++ I ++ + + + + Sbjct: 16 KGLASNTVVSYERDLKSYLLYLSKVEEISSLEAVSRSTIIQFLKFLTENGKSSKTIARHI 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193 S+R ++ +R++ +P + ++RPK++ + + + E++Q G + + Sbjct: 76 ASIRSFHQFLLREKVTTQDPTVHIDRPKQEQKLPQVMSVEEVQALLDSPDTSKVFGMRDK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252 E L +G+R S+ + + + ++ + L + Sbjct: 136 AMLELLYATGMRVSELISLNLSDVHLTMGFVRCIGKGNKERIIPLGTMAQNAITNYIEES 195 Query: 253 ETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 + F+N ++ F K +AG+ K + H +R AT + Sbjct: 196 RSQLLKKKTTDALFVNLYGNRLTRQGFWKILKKLTKEAGIEKELTPHTLRHSFATHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329 GA + G + + YT Sbjct: 256 GADLRAVQEMLGHADISTTQIYTHVTKTR 284 >gi|146308415|ref|YP_001188880.1| site-specific tyrosine recombinase XerD [Pseudomonas mendocina ymp] gi|145576616|gb|ABP86148.1| tyrosine recombinase XerD subunit [Pseudomonas mendocina ymp] Length = 298 Score = 143 bits (360), Expect = 5e-32, Method: Composition-based stats. Identities = 51/280 (18%), Positives = 97/280 (34%), Gaps = 24/280 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTPS 131 I + ++ L+ ++R ++ S + + I I + R Sbjct: 9 IERFLETLWLEKGLSAHTRAAYRSDLEHFNHWLDGRGLQLQCIGRDAILDHLAWRLEQGY 68 Query: 132 SAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-- 186 A +FL+ +R +++ +R+ V +P L VE P+ + ++ D++ Sbjct: 69 QARSTARFLSGVRGFYRFLLREGVVEEDPSLQVELPQIGRPLPKSLSEADVEALLQAPDL 128 Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243 G + R E L GLR S+ ++ + ++ V L + + Sbjct: 129 DDPIGLRDRAMLEVLYACGLRVSELVGLTLEQVNLRQGVLRVFGKGSKERLVPLGEEAIA 188 Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRK 291 + F + ++M F K +A AG+ KS H +R Sbjct: 189 WIERYSREARPLLLGGKPSDVLFPSLRGEQMTRQTFWHRIKHQAKVAGIGKSLSPHTLRH 248 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 AT + GA + G + + YT A R RL Sbjct: 249 AFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHIA-RARL 287 >gi|291615189|ref|YP_003525346.1| tyrosine recombinase XerD [Sideroxydans lithotrophicus ES-1] gi|291585301|gb|ADE12959.1| tyrosine recombinase XerD [Sideroxydans lithotrophicus ES-1] Length = 303 Score = 143 bits (360), Expect = 5e-32, Method: Composition-based stats. Identities = 50/290 (17%), Positives = 100/290 (34%), Gaps = 25/290 (8%) Query: 73 WLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFD---YRKITTKHIRSGVESR-- 126 L+ E+ + L+ N+ S+ ++ + T I+ + Sbjct: 10 DLLDEFSDALWLEDGLSRNTLESYRRDLNKFTEWLQKQRGCGLQAATHADIQGFLAHLVS 69 Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 K +S + ++S++ LF++ +RQ + +P L + PK + T+ED++ + Sbjct: 70 GEKAKATSTSRAISSLKRLFRYLLRQNKITADPTLQIATPKLPRSLPKSLTEEDVELLLN 129 Query: 185 FWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPD 239 + + R E L SGLR S+ V + ++ + V L + Sbjct: 130 APDVDTPLGMRDRTMLEVLYASGLRVSELVGLSVAQVSLDMGVTRVMGKGSKERLVPLGE 189 Query: 240 GFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287 + + + F+ + M F K A + G++K S H Sbjct: 190 EALDWVKRYLAEARPALLAGQVADALFVTQRGEGMTRQMFWYLIKKHAKEGGLHKPLSPH 249 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 +R AT + GA + G + + YT A + Sbjct: 250 TLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARERLKALHAMH 299 >gi|229019302|ref|ZP_04176128.1| Tyrosine recombinase xerD [Bacillus cereus AH1273] gi|229025548|ref|ZP_04181956.1| Tyrosine recombinase xerD [Bacillus cereus AH1272] gi|228735730|gb|EEL86317.1| Tyrosine recombinase xerD [Bacillus cereus AH1272] gi|228741987|gb|EEL92161.1| Tyrosine recombinase xerD [Bacillus cereus AH1273] Length = 296 Score = 143 bits (360), Expect = 5e-32, Method: Composition-based stats. Identities = 41/271 (15%), Positives = 101/271 (37%), Gaps = 25/271 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRK---HTPSSAIQFL 137 LA N+ +S+E ++ + + ++T HI + ++ K + + + + Sbjct: 16 KGLAKNTVVSYERDLKSYVKYLQNVEQTKTFHEVTRIHIVNFLQYLKENGKSSKTLARHI 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193 S+R ++ +R+ V +P + +E P+ + + + + ++++ G + + Sbjct: 76 ASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSIDEVEALLQTPKAVSAFGIRDK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252 E L +GLR S+ ++ + + ++ + L + + Sbjct: 136 AMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNKERIIPLGSLATEAIQKYIEKG 195 Query: 253 ETFFI----------NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 + N+ +++ F K A +A + K + H +R AT + Sbjct: 196 RRELMGKKAVDALFLNHHGNRLSRQGFWKILKRLAKEANIEKELTPHTLRHSFATHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331 GA + G + + YT + RL Sbjct: 256 GADLRAVQEMLGHADISTTQIYTH-VSKARL 285 >gi|315163991|gb|EFU08008.1| tyrosine recombinase XerD [Enterococcus faecalis TX1302] Length = 296 Score = 143 bits (360), Expect = 5e-32, Method: Composition-based stats. Identities = 43/287 (14%), Positives = 97/287 (33%), Gaps = 27/287 (9%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRK 127 + L+ Y L+ N+R S+E + + G + ++ I ++S Sbjct: 3 EQLVD-YLHYLQIERGLSNNTRRSYERDLKKYVAFLQEQGLHSWDEVDRYMITEFLQSLH 61 Query: 128 ---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQ 180 +S I+ ++S+R ++ ++ NP ++ PK+ + + ++ ++ Sbjct: 62 EEQQASASVIRMISSLRGFHQFLRQERLSEHNPMQHIDSPKKVQKLPSTLSVDEVTRLIE 121 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------------NNIFSIKTQK 228 + G + R E + +GLR S+ + L + I Sbjct: 122 TPDTSKPLGMRNRAILEVMYATGLRVSELIEIKLGDLHLSIGLLQTIGKGDKERIIPLGD 181 Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286 + L + F+N+ + ++ K +A + K + Sbjct: 182 YAIQWIQRYMNEARPQLIKNHPNETHLFVNHHGEPLSRQGIWKNLKQIVREAQIEKNITP 241 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 H +R AT + GA + G + + YT + R+ Sbjct: 242 HTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITKQ-RMAD 287 >gi|78042632|ref|YP_360783.1| tyrosine recombinase XerD [Carboxydothermus hydrogenoformans Z-2901] gi|77994747|gb|ABB13646.1| tyrosine recombinase XerD [Carboxydothermus hydrogenoformans Z-2901] Length = 287 Score = 143 bits (360), Expect = 5e-32, Method: Composition-based stats. Identities = 51/275 (18%), Positives = 95/275 (34%), Gaps = 20/275 (7%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK----HIRSGVESRKH 128 L +Y ++N+ +S+ ++ + + I + +RK Sbjct: 3 DLFIDYL--LLEKGFSLNTLLSYRRDLEKFVSFLEKRNISIIDATSKDIKLYLQDLARKL 60 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-- 186 P+S + L ++R +K+ +R++ V NP L V+ PK + + E++ Sbjct: 61 KPASVARNLAAIRSFYKYLLREKIVGENPALDVDGPKLGLKLPEILSYEEIDLLLKAPDL 120 Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--------IKTQKTGTIITVE 236 EG + R E L +GLR S+ + +L + + Sbjct: 121 STWEGVRDRAMLELLYATGLRVSELVNLELPNLYLDERYVKILGKGAKMRIVPFGEVAAH 180 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 + ++ L A FI F K KAG+ N + H +R A Sbjct: 181 YLNQYLALRAKRKSNSLKLFITRKGSGFTRQGFWKMLKRYGQKAGIVKNLTPHLIRHSFA 240 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 T + GA + G ++ + YT R Sbjct: 241 THLLENGADLRIVQELLGHSFIETTQIYTHLTTRK 275 >gi|227112633|ref|ZP_03826289.1| site-specific tyrosine recombinase XerD [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 299 Score = 142 bits (359), Expect = 5e-32, Method: Composition-based stats. Identities = 43/281 (15%), Positives = 94/281 (33%), Gaps = 24/281 (8%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVESR 126 LI ++ + +LA N+ S+ + D + + + + Sbjct: 7 ALIEQFLDALWLERNLAENTLASYRLDLRTLAEWLAHHDNDLLQAQSLDLQAFLADRVEG 66 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 + +S+ + L++MR F++ R++ + +P + PK + ++ + + Sbjct: 67 GYKATSSARLLSAMRRFFQYLYREKCRSDDPSAVLSSPKLPQRLPKDLSEAQVDTLLNAP 126 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241 + + E L +GLR S+ + + ++ K V L + Sbjct: 127 SIEQPLELRDKAMLEVLYATGLRVSELVSLTMSDVSLRQGVVRVLGKGNKERLVPLGEEA 186 Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 + + + F +N ++M F K A A ++ S H Sbjct: 187 VYWIEYYLEHGRPWLLNGQTLDVLFPSNRARQMTRQTFWHRIKHYAVLASIDSEKLSPHV 246 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R AT + GA + G + + YT A Sbjct: 247 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 287 >gi|47568147|ref|ZP_00238851.1| integrase/recombinase XerD [Bacillus cereus G9241] gi|222097540|ref|YP_002531597.1| site-specific tyrosine recombinase xerd [Bacillus cereus Q1] gi|47555137|gb|EAL13484.1| integrase/recombinase XerD [Bacillus cereus G9241] gi|221241598|gb|ACM14308.1| integrase/recombinase (tyrosine recombinase) [Bacillus cereus Q1] Length = 285 Score = 142 bits (359), Expect = 5e-32, Method: Composition-based stats. Identities = 39/269 (14%), Positives = 99/269 (36%), Gaps = 24/269 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRK---HTPSSAIQFL 137 LA N+ +S+E ++ + + ++T HI + ++ K + + + + Sbjct: 5 KGLAKNTVVSYERDLKSYVKYLQNVEQAKSFHEVTRLHIVNFLQHLKENGKSSKTLARHI 64 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193 S+R ++ +R+ V +P + +E P+ + + + + ++++ G + + Sbjct: 65 ASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSVDEVEALLQTPKMTSAFGVRDK 124 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252 E L +GLR S+ ++ + + ++ + L + + Sbjct: 125 AMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNKERIIPLGSLATEAIQKYIEKG 184 Query: 253 ETFFI----------NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 + N+ +++ F K A +A + K + H +R AT + Sbjct: 185 RRELMGKKVVDALFLNHHGNRLSRQGFWKILKRLAKEANIEKELTPHTLRHSFATHLLEN 244 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329 GA + G + + YT + Sbjct: 245 GADLRAVQEMLGHADISTTQIYTHVSKTR 273 >gi|29376101|ref|NP_815255.1| integrase/recombinase XerD, putative [Enterococcus faecalis V583] gi|227518728|ref|ZP_03948777.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis TX0104] gi|227553337|ref|ZP_03983386.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis HH22] gi|255975876|ref|ZP_05426462.1| phage integrase [Enterococcus faecalis T2] gi|256619040|ref|ZP_05475886.1| integrase [Enterococcus faecalis ATCC 4200] gi|256762466|ref|ZP_05503046.1| phage integrase [Enterococcus faecalis T3] gi|256958957|ref|ZP_05563128.1| integrase [Enterococcus faecalis DS5] gi|256961950|ref|ZP_05566121.1| phage integrase [Enterococcus faecalis Merz96] gi|256965148|ref|ZP_05569319.1| phage integrase [Enterococcus faecalis HIP11704] gi|257078988|ref|ZP_05573349.1| phage integrase [Enterococcus faecalis JH1] gi|257082573|ref|ZP_05576934.1| phage integrase [Enterococcus faecalis E1Sol] gi|257085206|ref|ZP_05579567.1| phage integrase [Enterococcus faecalis Fly1] gi|257086767|ref|ZP_05581128.1| phage integrase [Enterococcus faecalis D6] gi|257416070|ref|ZP_05593064.1| integrase [Enterococcus faecalis AR01/DG] gi|257419273|ref|ZP_05596267.1| phage integrase [Enterococcus faecalis T11] gi|293383018|ref|ZP_06628936.1| tyrosine recombinase XerD [Enterococcus faecalis R712] gi|293389493|ref|ZP_06633950.1| tyrosine recombinase XerD [Enterococcus faecalis S613] gi|294781340|ref|ZP_06746683.1| tyrosine recombinase XerD [Enterococcus faecalis PC1.1] gi|300860304|ref|ZP_07106391.1| tyrosine recombinase XerD [Enterococcus faecalis TUSoD Ef11] gi|307271041|ref|ZP_07552324.1| tyrosine recombinase XerD [Enterococcus faecalis TX4248] gi|307273248|ref|ZP_07554494.1| tyrosine recombinase XerD [Enterococcus faecalis TX0855] gi|307274985|ref|ZP_07556148.1| tyrosine recombinase XerD [Enterococcus faecalis TX2134] gi|307278097|ref|ZP_07559181.1| tyrosine recombinase XerD [Enterococcus faecalis TX0860] gi|312907511|ref|ZP_07766502.1| tyrosine recombinase XerD [Enterococcus faecalis DAPTO 512] gi|312910129|ref|ZP_07768976.1| tyrosine recombinase XerD [Enterococcus faecalis DAPTO 516] gi|29343563|gb|AAO81325.1| integrase/recombinase XerD, putative [Enterococcus faecalis V583] gi|227073809|gb|EEI11772.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis TX0104] gi|227177524|gb|EEI58496.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis HH22] gi|255968748|gb|EET99370.1| phage integrase [Enterococcus faecalis T2] gi|256598567|gb|EEU17743.1| integrase [Enterococcus faecalis ATCC 4200] gi|256683717|gb|EEU23412.1| phage integrase [Enterococcus faecalis T3] gi|256949453|gb|EEU66085.1| integrase [Enterococcus faecalis DS5] gi|256952446|gb|EEU69078.1| phage integrase [Enterococcus faecalis Merz96] gi|256955644|gb|EEU72276.1| phage integrase [Enterococcus faecalis HIP11704] gi|256987018|gb|EEU74320.1| phage integrase [Enterococcus faecalis JH1] gi|256990603|gb|EEU77905.1| phage integrase [Enterococcus faecalis E1Sol] gi|256993236|gb|EEU80538.1| phage integrase [Enterococcus faecalis Fly1] gi|256994797|gb|EEU82099.1| phage integrase [Enterococcus faecalis D6] gi|257157898|gb|EEU87858.1| integrase [Enterococcus faecalis ARO1/DG] gi|257161101|gb|EEU91061.1| phage integrase [Enterococcus faecalis T11] gi|291079683|gb|EFE17047.1| tyrosine recombinase XerD [Enterococcus faecalis R712] gi|291081110|gb|EFE18073.1| tyrosine recombinase XerD [Enterococcus faecalis S613] gi|294451570|gb|EFG20029.1| tyrosine recombinase XerD [Enterococcus faecalis PC1.1] gi|300849343|gb|EFK77093.1| tyrosine recombinase XerD [Enterococcus faecalis TUSoD Ef11] gi|306505494|gb|EFM74680.1| tyrosine recombinase XerD [Enterococcus faecalis TX0860] gi|306508433|gb|EFM77540.1| tyrosine recombinase XerD [Enterococcus faecalis TX2134] gi|306510233|gb|EFM79257.1| tyrosine recombinase XerD [Enterococcus faecalis TX0855] gi|306512539|gb|EFM81188.1| tyrosine recombinase XerD [Enterococcus faecalis TX4248] gi|310626539|gb|EFQ09822.1| tyrosine recombinase XerD [Enterococcus faecalis DAPTO 512] gi|311289402|gb|EFQ67958.1| tyrosine recombinase XerD [Enterococcus faecalis DAPTO 516] gi|315027289|gb|EFT39221.1| tyrosine recombinase XerD [Enterococcus faecalis TX2137] gi|315033946|gb|EFT45878.1| tyrosine recombinase XerD [Enterococcus faecalis TX0017] gi|315036955|gb|EFT48887.1| tyrosine recombinase XerD [Enterococcus faecalis TX0027] gi|315144440|gb|EFT88456.1| tyrosine recombinase XerD [Enterococcus faecalis TX2141] gi|315147241|gb|EFT91257.1| tyrosine recombinase XerD [Enterococcus faecalis TX4244] gi|315150560|gb|EFT94576.1| tyrosine recombinase XerD [Enterococcus faecalis TX0012] gi|315160468|gb|EFU04485.1| tyrosine recombinase XerD [Enterococcus faecalis TX0645] gi|315169058|gb|EFU13075.1| tyrosine recombinase XerD [Enterococcus faecalis TX1341] gi|315172335|gb|EFU16352.1| tyrosine recombinase XerD [Enterococcus faecalis TX1346] gi|315575890|gb|EFU88081.1| tyrosine recombinase XerD [Enterococcus faecalis TX0309B] gi|315580542|gb|EFU92733.1| tyrosine recombinase XerD [Enterococcus faecalis TX0309A] gi|323480700|gb|ADX80139.1| tyrosine recombinase XerD [Enterococcus faecalis 62] Length = 296 Score = 142 bits (359), Expect = 5e-32, Method: Composition-based stats. Identities = 43/287 (14%), Positives = 97/287 (33%), Gaps = 27/287 (9%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRK 127 + L+ Y L+ N+R S+E + + G + ++ I ++S Sbjct: 3 EQLVD-YLHYLQIERGLSNNTRRSYERDLKKYVAFLQEQGLHSWDEVDRYMITEFLQSLH 61 Query: 128 ---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQ 180 +S I+ ++S+R ++ ++ NP ++ PK+ + + ++ ++ Sbjct: 62 EEQQASASVIRMISSLRGFHQFLRQERLSEHNPMQHIDSPKKVQKLPSTLSVDEVTRLIE 121 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------------NNIFSIKTQK 228 + G + R E + +GLR S+ + L + I Sbjct: 122 TPDTSKPLGMRNRAILEVMYATGLRVSELIEIKLGDLHLSIGLLQTIGKGDKERIIPLGD 181 Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286 + L + F+N+ + ++ K +A + K + Sbjct: 182 YAIQWIERYMNEARPQLIKNHPNETHLFVNHHGEPLSRQGIWKNLKQIVREAQIEKNITP 241 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 H +R AT + GA + G + + YT + R+ Sbjct: 242 HTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITKQ-RMAD 287 >gi|304315042|ref|YP_003850189.1| site-specific recombinase/integrase [Methanothermobacter marburgensis str. Marburg] gi|302588501|gb|ADL58876.1| predicted site-specific recombinase/integrase [Methanothermobacter marburgensis str. Marburg] Length = 311 Score = 142 bits (359), Expect = 5e-32, Method: Composition-based stats. Identities = 44/294 (14%), Positives = 92/294 (31%), Gaps = 31/294 (10%) Query: 55 TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD----FD 110 + + LI +Y + + N+ ++ S + +D Sbjct: 7 MKRESEEKQGLLERYNFPELIEDYLVELEIRNYSPNTIKTYRSIVKNFYEFLMEEDDLYD 66 Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRK 167 R++ R ++ + ++ F+++ I+ V+ PKR Sbjct: 67 DRRVLRSFKRYIQYLKRDKNVTQNYIYLVTVVIKKFFEFSE------IDCLQEVKAPKRT 120 Query: 168 TEGIRPWTKEDMQQFKSF-----------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216 + ++++ + + ++ RL L SGLR S+ V Sbjct: 121 KSLPKSLNEDEVMRLINAVELSDDGSPIKRFIKTRDRLILSLLYSSGLRVSELVSLKVND 180 Query: 217 LQNNIFSIKTQKT-GTIITVELPDGFM----KLLAMTPIGKETFFINNDKQKMNATQFSI 271 + +I+ + V + + L+ E F+N + + Sbjct: 181 IDMGDRTIRIRGKGDKDRIVLFDESTRDLLVEYLSRRIHESEYLFLNRFGDPLTPRYVQM 240 Query: 272 WFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 K A KAG+NK + H +R AT G + G + + YT Sbjct: 241 MIKNYARKAGINKKVTPHILRHSFATHLLKNGVDIRAIQQLLGHSNLSTTQIYT 294 >gi|329571728|gb|EGG53409.1| tyrosine recombinase XerD [Enterococcus faecalis TX1467] Length = 305 Score = 142 bits (359), Expect = 6e-32, Method: Composition-based stats. Identities = 43/287 (14%), Positives = 97/287 (33%), Gaps = 27/287 (9%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRK 127 + L+ Y L+ N+R S+E + + G + ++ I ++S Sbjct: 3 EQLVD-YLHYLQIERGLSNNTRRSYERDLKKYVAFLQEQGLHSWDEVDRYMITEFLQSLH 61 Query: 128 ---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQ 180 +S I+ ++S+R ++ ++ NP ++ PK+ + + ++ ++ Sbjct: 62 EEQQASASVIRMISSLRGFHQFLRQERLSEHNPMQHIDSPKKVQKLPSTLSVDEVTRLIE 121 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------------NNIFSIKTQK 228 + G + R E + +GLR S+ + L + I Sbjct: 122 TPDTSKPLGMRNRAILEVMYATGLRVSELIEIKLGDLHLSIGLLQTIGKGDKERIIPLGD 181 Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286 + L + F+N+ + ++ K +A + K + Sbjct: 182 YAIQWIERYMNEARPQLIKNHPNETHLFVNHHGEPLSRQGIWKNLKQIVREAQIEKNITP 241 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 H +R AT + GA + G + + YT + R+ Sbjct: 242 HTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITKQ-RMAD 287 >gi|229031733|ref|ZP_04187726.1| Tyrosine recombinase xerD [Bacillus cereus AH1271] gi|228729617|gb|EEL80604.1| Tyrosine recombinase xerD [Bacillus cereus AH1271] Length = 296 Score = 142 bits (359), Expect = 6e-32, Method: Composition-based stats. Identities = 41/271 (15%), Positives = 101/271 (37%), Gaps = 25/271 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRK---HTPSSAIQFL 137 LA N+ +S+E ++ + + ++T HI + ++ K + + + + Sbjct: 16 KGLAKNTVVSYERDLKSYVKYLQNVEQAKSFHEVTRLHIVNFLQHLKENGKSSKTLARHI 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193 S+R ++ +R+ V +P + +E P+ + + + + ++++ G + + Sbjct: 76 ASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSIDEVEALLQTPKMTSAFGVRDK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252 E L +GLR S+ ++ + + ++ + L + + Sbjct: 136 AMLELLYATGLRVSELIALNLEDIHLTMGFVRCIGKGNKERIIPLGSLATEAIQKYIEKG 195 Query: 253 ETFFI----------NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 + N+ +++ F K A +A + K + H +R AT + Sbjct: 196 RRELMGKRVVDALFLNHHGNRLSRQGFWKILKRLAKEANIEKELTPHTLRHSFATHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331 GA + G + + YT + RL Sbjct: 256 GADLRAVQEMLGHADISTTQIYTH-VSKARL 285 >gi|317493832|ref|ZP_07952249.1| tyrosine recombinase XerD [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918159|gb|EFV39501.1| tyrosine recombinase XerD [Enterobacteriaceae bacterium 9_2_54FAA] Length = 299 Score = 142 bits (359), Expect = 6e-32, Method: Composition-based stats. Identities = 46/281 (16%), Positives = 94/281 (33%), Gaps = 24/281 (8%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG----DFDYRKI-TTKHIRSGVESR 126 LI ++ + +LA N+ S+ + D ++ + + Sbjct: 7 ALIEQFLDALWLERNLAENTLASYRLDLRSLAEWLAHHHSDLLLAQVSDLQDFLAERVDG 66 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + +S+ + L++MR LF++ R++ + +P + PK + T+ + Sbjct: 67 GYKATSSARLLSAMRRLFQYFYREKMRSDDPTTLLSSPKLPQRLPKDLTEAQVDTLLQTP 126 Query: 187 SEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 + + E L +GLR S+ + + ++ V L + Sbjct: 127 CIENPIELRDKAMLEVLYATGLRVSELVGLTLADVSLRQGVVRVIGKGNKERLVPLGEEA 186 Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 + + + F +N Q+M F K A AG++ S H Sbjct: 187 VYWIEYYLEYGRPWLLNGQTIDVLFPSNRTQQMTRQTFWHRIKHYAVLAGIDSSRLSPHV 246 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R AT + GA + G + + YT A Sbjct: 247 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 287 >gi|14591576|ref|NP_143658.1| integrase/recombinase [Pyrococcus horikoshii OT3] gi|73920474|sp|O59490|XERCL_PYRHO RecName: Full=Probable tyrosine recombinase xerC-like gi|3258262|dbj|BAA30945.1| 285aa long hypothetical integrase/recombinase [Pyrococcus horikoshii OT3] Length = 285 Score = 142 bits (359), Expect = 6e-32, Method: Composition-based stats. Identities = 36/283 (12%), Positives = 96/283 (33%), Gaps = 18/283 (6%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 ++ E+ + N+ + Y + + + + + ++ Sbjct: 10 SDILEEFATYLELEGKSKNTIRMYTYYLSKFFEE--GYSPTARDALKFLAKLRKSGYSIR 67 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 S + +++ FK+ + ++ PK + T++++++ ++ + Sbjct: 68 SLNLVIQALKSYFKFEG-----LDSEAEKLKNPKIPKSLPKSLTEDEVKK-IVSVADNLR 121 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ------KTGTIITVELPDGFMKLL 245 +L L +GLR S+ C ++ + + + I+ L + L Sbjct: 122 DKLILLLLYGAGLRVSELCNLKIEDVNFEKSFLIVRGGKGGKDRVIPISKTLLFEIERYL 181 Query: 246 AMTPIGKETFFINNDKQKM---NATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGA 302 F+ + + + + K K G+N + H +R AT + G Sbjct: 182 KTRKDNSPYLFVEKRRNRKDKLSPKTVWMLVKKYGKKVGLNVTPHQLRHSFATHMLERGV 241 Query: 303 TAHELMATYGWKTVDQAETYTKGADRI-RLGIKNSRRISSVVD 344 + G + + YTK + R I+ ++ I +++ Sbjct: 242 DIRIIQELLGHANLSTTQIYTKVTTKHLREAIEKAKLIETILG 284 >gi|90961911|ref|YP_535827.1| integrase/recombinase XerD/RipX family [Lactobacillus salivarius UCC118] gi|90821105|gb|ABD99744.1| Integrase/recombinase, XerD/RipX family [Lactobacillus salivarius UCC118] Length = 297 Score = 142 bits (359), Expect = 6e-32, Method: Composition-based stats. Identities = 51/281 (18%), Positives = 111/281 (39%), Gaps = 25/281 (8%) Query: 77 EYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGVESRKH---T 129 +Y L+ N+ S+ F + + + +++ + I + ++S K+ Sbjct: 9 DYLHYLKVERGLSENTINSYGIDFKLFLEYLRENEIPSFKQVNKEVIVNYMQSEKNNNKA 68 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-- 187 SS ++ ++S+R F++ +++ + +P L ++ PK+K + TKE++++ + Sbjct: 69 NSSILRSVSSLRKFFQYLAQEKIIEKDPMLLIDTPKKKQHLPQVLTKEEVEKLLRSPNTG 128 Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKL 244 G + R E + +GLR S+ ++ L + + K V + D +K Sbjct: 129 QVLGLRDRAMLELMYATGLRISEIINLKLEDLHLTMGTLQTLGKGHKERIVPVGDEAIKW 188 Query: 245 LAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292 + F+N + KA+ KAG+ K + H +R Sbjct: 189 VNRYLEEARPKLLKQKRSNYLFLNFHGNNLTRQGVWKNLKAEVRKAGIQKNITPHTLRHS 248 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 AT + GA + G + + YT ++ +L Sbjct: 249 FATHILENGADLRIVQELLGHADISTTQIYTHLSN-KQLAD 288 >gi|42783204|ref|NP_980451.1| site-specific tyrosine recombinase XerD [Bacillus cereus ATCC 10987] gi|206976263|ref|ZP_03237171.1| integrase/recombinase XerD [Bacillus cereus H3081.97] gi|217961583|ref|YP_002340153.1| site-specific tyrosine recombinase XerD [Bacillus cereus AH187] gi|229140825|ref|ZP_04269370.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-ST26] gi|229198213|ref|ZP_04324921.1| Tyrosine recombinase xerD [Bacillus cereus m1293] gi|42739132|gb|AAS43059.1| integrase/recombinase XerD [Bacillus cereus ATCC 10987] gi|206745459|gb|EDZ56858.1| integrase/recombinase XerD [Bacillus cereus H3081.97] gi|217064224|gb|ACJ78474.1| integrase/recombinase XerD [Bacillus cereus AH187] gi|228585232|gb|EEK43342.1| Tyrosine recombinase xerD [Bacillus cereus m1293] gi|228642615|gb|EEK98901.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-ST26] gi|324327997|gb|ADY23257.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis serovar finitimus YBT-020] Length = 296 Score = 142 bits (358), Expect = 6e-32, Method: Composition-based stats. Identities = 39/269 (14%), Positives = 99/269 (36%), Gaps = 24/269 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRK---HTPSSAIQFL 137 LA N+ +S+E ++ + + ++T HI + ++ K + + + + Sbjct: 16 KGLAKNTVVSYERDLKSYVKYLQNVEQAKSFHEVTRLHIVNFLQHLKENGKSSKTLARHI 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193 S+R ++ +R+ V +P + +E P+ + + + + ++++ G + + Sbjct: 76 ASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSVDEVEALLQTPKMTSAFGVRDK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252 E L +GLR S+ ++ + + ++ + L + + Sbjct: 136 AMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNKERIIPLGSLATEAIQKYIEKG 195 Query: 253 ETFFI----------NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 + N+ +++ F K A +A + K + H +R AT + Sbjct: 196 RRELMGKKVVDALFLNHHGNRLSRQGFWKILKRLAKEANIEKELTPHTLRHSFATHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329 GA + G + + YT + Sbjct: 256 GADLRAVQEMLGHADISTTQIYTHVSKTR 284 >gi|293391879|ref|ZP_06636213.1| tyrosine recombinase XerD [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952413|gb|EFE02532.1| tyrosine recombinase XerD [Aggregatibacter actinomycetemcomitans D7S-1] Length = 297 Score = 142 bits (358), Expect = 6e-32, Method: Composition-based stats. Identities = 39/285 (13%), Positives = 87/285 (30%), Gaps = 24/285 (8%) Query: 69 TTLKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSG 122 T L+ + L+ N+ S+ + + + Sbjct: 1 MTNSALLDLFLNELWIGKGLSPNTVASYRLDLTALCDWLEARHLSLLSLDAVDLQTFLGE 60 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + + +S + L+++R LF++ +++Y +P + PK + T++ + Sbjct: 61 RVEQDYKATSTARLLSAIRKLFQYLYQEKYRTDDPSAVLSSPKLPNRLPKYLTEQQVTDL 120 Query: 183 KSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVEL 237 + + + E L +GLR ++ + N ++ V + Sbjct: 121 LNVQSLEQPIELRDKAMLELLYATGLRVTELVSLNTNSINLNQGVVRVIGKGKKERIVPM 180 Query: 238 PDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---K 284 + + + F + +M F K A A ++ Sbjct: 181 GEEATHWVKQFMLFARPMLLGGQSSDVLFPSRRGTQMTRQTFWHRIKHYAVLAEIDSEML 240 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 S H +R AT + GA + G + + YT A Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKER 285 >gi|254000090|ref|YP_003052153.1| tyrosine recombinase XerD [Methylovorus sp. SIP3-4] gi|253986769|gb|ACT51626.1| tyrosine recombinase XerD [Methylovorus sp. SIP3-4] Length = 298 Score = 142 bits (358), Expect = 6e-32, Method: Composition-based stats. Identities = 51/283 (18%), Positives = 95/283 (33%), Gaps = 24/283 (8%) Query: 72 KWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRK 127 L+ + LA N+ S+ + ++ + R Sbjct: 6 AALLDSFVDHLWLEDGLARNTLESYRRDLALFADWLWSEHAKLLNQADQGDLQQYLAFRF 65 Query: 128 HT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 T P S + + S+R +++ +R+ V+++P L ++ PK + ++++ + Sbjct: 66 PTSKPRSVSRLIASLRRFYRYGLREGQVSVDPTLLIDTPKLPRSLPKSLNEDEVVALLNA 125 Query: 186 WSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDG 240 G + R E L GLR S+ + N ++ V L + Sbjct: 126 PDIAQAIGLRDRAMLETLYACGLRVSELVGLRYTEVSLNEGVVRVTGKGSKTRLVPLGEE 185 Query: 241 FMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288 + L F+ + M F K A +AG++K S H Sbjct: 186 SVDWLLRYVREGRPQILQQRVSDSLFVTQRGEAMTRQAFWYLIKRYALQAGIHKPLSPHV 245 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +R AT + GA + G + + YT A R RL Sbjct: 246 LRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVA-RERL 287 >gi|238754564|ref|ZP_04615918.1| Tyrosine recombinase xerD [Yersinia ruckeri ATCC 29473] gi|238707195|gb|EEP99558.1| Tyrosine recombinase xerD [Yersinia ruckeri ATCC 29473] Length = 299 Score = 142 bits (358), Expect = 7e-32, Method: Composition-based stats. Identities = 45/280 (16%), Positives = 95/280 (33%), Gaps = 24/280 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESR---K 127 LI ++ + +LA N+ S+ + + ++S + R Sbjct: 8 LIEQFLDALWLERNLAENTLASYRLDLQALAGWLQRHNKSLLLADPLDLQSFLAERIEGG 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + +S+ + L++MR F++ R++ +P + PK + ++ + + + Sbjct: 68 YKATSSARLLSAMRRFFQYLYREKLREDDPTALLSSPKLPQRLPKDLSEAQVDALLNSPN 127 Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 + + E L +GLR S+ + + ++ V L + + Sbjct: 128 VDIPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKERLVPLGEEAV 187 Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289 + + F +N Q+M F K A AG++ S H + Sbjct: 188 YWIENYMEYGRPWLINGQALDVLFPSNRSQQMTRQTFWHRIKHYAILAGIDSERLSPHVL 247 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + GA + G + + YT A Sbjct: 248 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 287 >gi|283479632|emb|CAY75548.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163] Length = 316 Score = 142 bits (358), Expect = 7e-32, Method: Composition-based stats. Identities = 42/281 (14%), Positives = 94/281 (33%), Gaps = 24/281 (8%) Query: 73 WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESR 126 LI ++ + +LA N+ S+ + + + + Sbjct: 24 DLIEQFLDALWIERNLAQNTVDSYRLDLRSLGDWLAHQQLSLLNVEVFNLQEFLAQRLEG 83 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + +S+ + L++MR LF++ R++ +P + PK + ++ +++ Sbjct: 84 GYKATSSARLLSAMRRLFQYLYREKLREDDPSALLSSPKLPQRLPKDLSEAQVERLLQAP 143 Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 + + E L +GLR ++ + + ++ V + + Sbjct: 144 CLEQPIELRDKAMLELLYATGLRVTELVGLTLSDISLRQGVVRVIGKGNKERLVPMGEEA 203 Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 + + + F +N ++M F K AT AG++ S H Sbjct: 204 VHWIEQYIEYGRPWLLNGQTIDVLFPSNRAKQMTRQTFWHRIKHYATLAGIDSDKLSPHV 263 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R AT + GA + G + + YT A Sbjct: 264 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 304 >gi|332180706|gb|AEE16394.1| Tyrosine recombinase xerC [Treponema brennaborense DSM 12168] Length = 308 Score = 142 bits (358), Expect = 7e-32, Method: Composition-based stats. Identities = 53/283 (18%), Positives = 89/283 (31%), Gaps = 24/283 (8%) Query: 66 KKPTTLKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSG 122 P TL+ E+ + +LA+N+ + + ++ R G +T +R Sbjct: 3 DAPATLQEACEEFLLYESSVRNLALNTIAGYRNDLARLCRLLGGASLPLTSVTVTDLRFC 62 Query: 123 VESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE-- 177 + SS +F+ ++R LF + R EY+ NP + K+ R T+ Sbjct: 63 IGELSRKKSAASSVNRFIAAVRSLFAYCRRFEYIKSNPATELHTVKQPRHLPRFMTESEV 122 Query: 178 ---DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TII 233 Q + ++ FE L SG R S+ + + S G Sbjct: 123 DALCSQPERKTLLWQTRDTAIFEMLYSSGCRVSELASLRLSDFSADFRSAVVTGKGGKDR 182 Query: 234 TVELPDGFMKLL----------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 V + K L FIN + + G + Sbjct: 183 RVFFSEQAGKALAGYLRERAARIPKNRTVSAVFINMQGTPLTTRGIRYIVSRYSGLEGTD 242 Query: 284 K--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 K S H R AT GA + G ++ + YT Sbjct: 243 KPVSPHAFRHTFATSMLSHGADVRVVQELLGHSSISTTQRYTH 285 >gi|294648993|ref|ZP_06726441.1| site-specific tyrosine recombinase XerD [Acinetobacter haemolyticus ATCC 19194] gi|292825128|gb|EFF83883.1| site-specific tyrosine recombinase XerD [Acinetobacter haemolyticus ATCC 19194] Length = 333 Score = 142 bits (358), Expect = 7e-32, Method: Composition-based stats. Identities = 45/281 (16%), Positives = 94/281 (33%), Gaps = 19/281 (6%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130 + +R +++ ++R ++ S Q + +++ I + +P Sbjct: 47 FLQGFRDYLVAQTVSPHTRNAYLSDLIQCSELHRTASLPQWSSEDIGDVLIELTKAGKSP 106 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-- 188 S + L+++R +K+ Q+ NP S PK + +++D++ + Sbjct: 107 RSIARCLSALRQFYKFLREQKLREDNPVASHHSPKIGRALPKDLSEQDVEALINAPDIST 166 Query: 189 --GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLL 245 G + R FE L GLR S+ ++ + ++ V L + Sbjct: 167 TLGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGFVRITGKGNKERLVPLGQYACDWI 226 Query: 246 AMT---------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 + F+ M+ F K A +A + S H +R A Sbjct: 227 EKYLAESRPQLYKSNTDYLFLTQHGGIMSRQNFWYAIKRYALQANIQAELSPHTLRHAFA 286 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 T + GA + G + + YT A + + Sbjct: 287 THLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQHRMQALHH 327 >gi|152989006|ref|YP_001346765.1| site-specific tyrosine recombinase XerD [Pseudomonas aeruginosa PA7] gi|150964164|gb|ABR86189.1| tyrosine recombinase XerD [Pseudomonas aeruginosa PA7] Length = 298 Score = 142 bits (358), Expect = 7e-32, Method: Composition-based stats. Identities = 56/296 (18%), Positives = 103/296 (34%), Gaps = 25/296 (8%) Query: 70 TLKW-LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVES 125 TL+ LI + + LA N+R ++ + +Q + I + Sbjct: 3 TLEHPLIDRFLDALWLEKGLADNTREAYRNDLEQFNAWLDGHGLRLEGVGRDAILDHLAW 62 Query: 126 R---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 R + S +FL+ +R +++ +R +A +P L V+ P+ + ++ D++ Sbjct: 63 RLEQGYKARSTARFLSGLRGFYRYCLRDGLIAEDPTLQVDLPQLGKPLPKSLSEADVEAL 122 Query: 183 KSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVEL 237 + G + R E L GLR S+ ++ + K V L Sbjct: 123 LAAPEVDDPLGLRDRTMLEVLYACGLRVSELVGLTLEQVNLRQGVVKVFGKGSKERLVPL 182 Query: 238 PDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-- 285 + + L + F + ++M F K A A + KS Sbjct: 183 GEEAIGWLERYLREARADLLGGRPSDVLFPSLRGEQMTRQTFWHRIKRHAQVAAIGKSIS 242 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 H +R AT + GA + G + + YT A R RL ++R Sbjct: 243 PHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHIA-RARLQDLHARHHPR 297 >gi|119505219|ref|ZP_01627294.1| site-specific tyrosine recombinase XerD [marine gamma proteobacterium HTCC2080] gi|119458910|gb|EAW40010.1| site-specific tyrosine recombinase XerD [marine gamma proteobacterium HTCC2080] Length = 282 Score = 142 bits (358), Expect = 7e-32, Method: Composition-based stats. Identities = 48/268 (17%), Positives = 97/268 (36%), Gaps = 23/268 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKI------TTKHIRSGVESRKHTPSSAIQFLT 138 L+ N+ ++ + + + + +P S+ +FL+ Sbjct: 3 RGLSENTLAAYRRDLSLYDEWLAEQTAESLLTAGSSQIQSYLGLKLRQGASPRSSARFLS 62 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194 + R ++WA+R+ ++ +P L +E PK+ + ++ D+++ + R Sbjct: 63 AARSFYRWALREGHIVEDPTLRIESPKQGRPLPKSLSETDVERLLGAPDLELALEFRDRT 122 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKE 253 E L GLR S+ V+ + N ++ K G V + + + L G Sbjct: 123 MLEMLYACGLRVSELVGLQVEQVGLNQGIVRVLGKGGKERLVPMGEEALDWLIQYMRGPR 182 Query: 254 TF----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAG 301 F +N ++M F K +AG+ + S H +R AT + G Sbjct: 183 IELLKGQSSNVLFPSNRSREMTRQTFWYRIKLYGERAGIQSHLSPHTLRHAFATHLLNHG 242 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRI 329 A + G + + YT A + Sbjct: 243 ADLRVVQMLLGHSDLSTTQIYTHVAKQR 270 >gi|239618321|ref|YP_002941643.1| integrase family protein [Kosmotoga olearia TBF 19.5.1] gi|239507152|gb|ACR80639.1| integrase family protein [Kosmotoga olearia TBF 19.5.1] Length = 305 Score = 142 bits (358), Expect = 7e-32, Method: Composition-based stats. Identities = 45/299 (15%), Positives = 102/299 (34%), Gaps = 30/299 (10%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRK 127 + + + + + +L+ N+ S+ + + DYR++ + I ++ Sbjct: 3 FEDAVERFAEYLEFVRNLSKNTVESYTRDLKHFGQYLEEYSLDYRQVKRRDIEKFMKELS 62 Query: 128 H--------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 +PSS + L++++ + + V P V+ PK + + E++ Sbjct: 63 QGNFSDSRLSPSSVARHLSTLKTFYMFLYVSGTVNKIPTDLVKAPKTRRRIPEYISYEEV 122 Query: 180 QQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT---GTII 233 Q+ + G + R + Y GLR S+ C ++ + + K+ Sbjct: 123 QKILEAFPETHLGKRNRAIVALMYYCGLRVSEVCSLTLRDISLESDPLVRVKSGKGDKDR 182 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWFKAKATKAGVNK 284 V L +++++ ++ F N + + + K +K Sbjct: 183 IVPLTPDAVRIISDYLKHRDRFPDANRHIKLFVGIRGEPITRKSVNKMLQNHVKKIFPDK 242 Query: 285 S--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 H R AT GA+ + G + Y DR + + R +S+ Sbjct: 243 HLHPHIFRHSCATHLLQRGASIKIVQEILGHANISTTSIYLHITDREKR--EAVRLLSN 299 >gi|57640712|ref|YP_183190.1| integrase/recombinase [Thermococcus kodakarensis KOD1] gi|73920475|sp|Q5JHA3|XERCL_PYRKO RecName: Full=Probable tyrosine recombinase xerC-like gi|57159036|dbj|BAD84966.1| integrase/recombinase [Thermococcus kodakarensis KOD1] Length = 282 Score = 142 bits (358), Expect = 7e-32, Method: Composition-based stats. Identities = 45/284 (15%), Positives = 93/284 (32%), Gaps = 18/284 (6%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132 +I E+ + ++ + Y + + GD + + + ++ S Sbjct: 6 EVIEEFETYLDLEGKSPHTIRMYTYYVRRYLEWGGD--LNAHSALRFLAHLRKNGYSNRS 63 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-GSQ 191 + ++R F++ + ++ PK + T+E++++ S + Sbjct: 64 LNLVVQALRAYFRFEG-----LDDEAERLKPPKVPRSLPKALTREEVKRLLSVIPPTRKR 118 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ------KTGTIITVELPDGFMKLL 245 RL L +GLR S+ C + + I + I L D L Sbjct: 119 DRLIVLLLYGAGLRVSELCNLKKDDVDLDRGLIVVRGGKGAKDRVVPIPKYLADEIRAYL 178 Query: 246 AMTPIGKET---FFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGA 302 E K K++ K KAGV + H +R AT + G Sbjct: 179 ESRSDESEYLLVEDRRRRKDKLSTRNVWYLLKRYGQKAGVEVTPHKLRHSFATHLLEEGV 238 Query: 303 TAHELMATYGWKTVDQAETYTKG-ADRIRLGIKNSRRISSVVDS 345 + G + + YTK + +R + ++ I ++ Sbjct: 239 DIRAIQELLGHSNLSTTQIYTKVTVEHLRKAQEKAKLIEKLMGE 282 >gi|326791364|ref|YP_004309185.1| integrase family protein [Clostridium lentocellum DSM 5427] gi|326542128|gb|ADZ83987.1| integrase family protein [Clostridium lentocellum DSM 5427] Length = 296 Score = 142 bits (358), Expect = 7e-32, Method: Composition-based stats. Identities = 48/277 (17%), Positives = 94/277 (33%), Gaps = 27/277 (9%) Query: 75 ISEYRKS-----AHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126 + EY S H + N+ S+E R G + + +T + I+ +E Sbjct: 1 MEEYITSFLYYLKHIKRASDNTVQSYERDLRYFERYVEEQGKIEIQSLTDQQIKVYLEHM 60 Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 K + ++ + L S+R ++ V+++ + NP + PK + + R ++E + Sbjct: 61 KDEEKSTATISRTLASIRAFCQYLVKEQVLNENPARLIALPKIEKKAPRILSQEQISSLL 120 Query: 184 SFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239 ++ G + R E L +G+R S+ + I + T+ + Sbjct: 121 EQPNKKDTKGIRDRAMLELLYATGIRVSELISLKTTDINLQQGYIICRDAQKERTIPIGK 180 Query: 240 GFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287 + L M F+N + M F K A A + + H Sbjct: 181 SAISALNMYLGEVRHILIRSANDKTLFVNCNGYPMTRQGFWKILKTYANAAHIQGEITPH 240 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R A GA + G + + Y Sbjct: 241 MLRHSFAAHLVQNGANLKSVQQMLGHSDISTTQVYMH 277 >gi|219871550|ref|YP_002475925.1| site-specific tyrosine recombinase XerD [Haemophilus parasuis SH0165] gi|219691754|gb|ACL32977.1| site-specific tyrosine recombinase XerD [Haemophilus parasuis SH0165] Length = 297 Score = 142 bits (358), Expect = 7e-32, Method: Composition-based stats. Identities = 39/282 (13%), Positives = 95/282 (33%), Gaps = 23/282 (8%) Query: 71 LKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVES 125 L +I ++ + L+ N+ S+ + + + + + Sbjct: 4 LDPIIEQFLDTLWQEQGLSENTVASYRLDLESFTQWLSEPNAFLKVDYVDLQTFLGERLE 63 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS- 184 + + +S+ + L+ +R F++ ++Y +P ++ P++ + ++E + + Sbjct: 64 QGYKATSSSRMLSCLRKFFRFLYLEKYRDDDPTATLTSPRKPAHLPKSLSEEQVLDLLNI 123 Query: 185 ---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDG 240 + + E L +GLR ++ + +L ++ V L + Sbjct: 124 PNTQDPLELRDKAMLELLYATGLRVTELVSLTLDNLSLRQGLVRIIGKGDKERLVPLGEE 183 Query: 241 FMKLLAMTP----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287 + + + F + +M F K A AG++ S H Sbjct: 184 ASYWIQQFFEYGRSSLLNGMQSDVVFPSRLGNQMTRQTFWHRIKHYALLAGIDSNKLSPH 243 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R AT + GA + G + + YT+ A Sbjct: 244 VLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTQVAKTR 285 >gi|50083543|ref|YP_045053.1| site-specific tyrosine recombinase [Acinetobacter sp. ADP1] gi|49529519|emb|CAG67231.1| site-specific tyrosine recombinase [Acinetobacter sp. ADP1] Length = 305 Score = 142 bits (358), Expect = 7e-32, Method: Composition-based stats. Identities = 48/290 (16%), Positives = 97/290 (33%), Gaps = 21/290 (7%) Query: 57 KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT 116 K+ I +P P + +R S++ ++R ++ S Q + + ++ Sbjct: 4 KKPRIPAPVTIPEQFS-FLQGFRDYLVAQSVSPHTRNAYLSDLIQ-CAQLVVVPLPQWSS 61 Query: 117 KHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 + I + +P S + L+++R FK+ Q+ NP + PK + Sbjct: 62 ETISDVLIELTKTGKSPRSIARSLSALRQFFKFLREQKIRDDNPVALHKSPKLGRTLPKD 121 Query: 174 WTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229 +++D++ + + R E L GLR S+ ++ + ++ Sbjct: 122 LSEQDVEALIHAPDTNTALGLRDRAMLEVLYACGLRVSELLNLRLELINLKQGYLRITGK 181 Query: 230 -GTIITVELPDGFMKLLAMT---------PIGKETFFINNDKQKMNATQFSIWFKAKATK 279 V L + + F+ M+ F K A + Sbjct: 182 GNKERLVPLGQMATDWIERYLVESRPQLYKSHTDYLFLTQHGGIMSRQNFWYAIKRYALQ 241 Query: 280 AGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 A + S H +R AT + GA + G + + YT A Sbjct: 242 ANILPEMSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAQ 291 >gi|167856576|ref|ZP_02479280.1| tyrosine recombinase XerD [Haemophilus parasuis 29755] gi|167852293|gb|EDS23603.1| tyrosine recombinase XerD [Haemophilus parasuis 29755] Length = 297 Score = 142 bits (358), Expect = 7e-32, Method: Composition-based stats. Identities = 39/282 (13%), Positives = 95/282 (33%), Gaps = 23/282 (8%) Query: 71 LKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVES 125 L +I ++ + L+ N+ S+ + + + + + Sbjct: 4 LDPIIEQFLDTLWQEQGLSENTVASYRLDLESFTQWLSEPNAFLKVDYVDLQTFLGERLE 63 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQ 181 + + +S+ + L+ +R F++ ++Y +P ++ P++ + ++E + Sbjct: 64 QGYKATSSSRMLSCLRKFFRFLYLEKYRDDDPTATLTSPRKPAHLPKSLSEEQVLDLLNI 123 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDG 240 + + + E L +GLR ++ + +L ++ V L + Sbjct: 124 PDTQDPLELRDKAMLELLYATGLRVTELVSLTLDNLSLRQGLVRIIGKGDKERLVPLGEE 183 Query: 241 FMKLLAMTP----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287 + + + F + +M F K A AG++ S H Sbjct: 184 ASYWIQQFFEYGRSSLLNGMQSDVVFPSRLGNQMTRQTFWHRIKHYALLAGIDSNKLSPH 243 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R AT + GA + G + + YT+ A Sbjct: 244 VLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTQVAKTR 285 >gi|332184671|gb|AEE26925.1| Tyrosine recombinase xerD [Francisella cf. novicida 3523] Length = 292 Score = 142 bits (358), Expect = 7e-32, Method: Composition-based stats. Identities = 43/280 (15%), Positives = 94/280 (33%), Gaps = 25/280 (8%) Query: 71 LKWLIS-EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--- 126 + + + + L+ N+ S+ + + D + + + + + R Sbjct: 5 VDAFLDNLWLEH----GLSQNTISSYRTDLKLLENYFAKTDLISLDFEQLYAFISYRSKN 60 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 ++ S + ++++R + W + NP + PK + + T+ D+++ Sbjct: 61 GYSSRSNARMISTLRKFYAWLISTGQTNNNPTAKLTLPKLAKKLPKDMTETDVERLLHAP 120 Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGF 241 G + + E + +GLR S+ + + NI K V + + Sbjct: 121 DMTEDVGIRDKAMLELMYATGLRVSELVGLNIDDIDINIGVIQVMGKGSKERIVPIGEYA 180 Query: 242 MKLLAMTPIGKET----------FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289 ++ L FI+ +++ F K A AG+ + S H + Sbjct: 181 LEYLQKYFAEARMSLSKNFKEKAVFISKHTKRITRQSFWHRIKNYALIAGINTDISPHTL 240 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + GA + G V YT + Sbjct: 241 RHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNR 280 >gi|323493661|ref|ZP_08098782.1| site-specific tyrosine recombinase XerD [Vibrio brasiliensis LMG 20546] gi|323312184|gb|EGA65327.1| site-specific tyrosine recombinase XerD [Vibrio brasiliensis LMG 20546] Length = 302 Score = 142 bits (358), Expect = 7e-32, Method: Composition-based stats. Identities = 40/280 (14%), Positives = 103/280 (36%), Gaps = 24/280 (8%) Query: 74 LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKHTP 130 ++ ++ S L+ N+ S+ + ++++ ++ I+ ++ + Sbjct: 11 IVEQFLDSMWMERGLSENTLASYRNDLVKLLQWMTANNYRLDFISLSGLQEYQSWLSDSG 70 Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +S + L+++R LF++ R++ + +P + PK + T++ ++ + Sbjct: 71 YKQTSRARMLSAIRRLFQYLHREKIRSDDPSALLVSPKLPKRLPKDLTEDQVEALLNAPD 130 Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM 242 + + E L +GLR ++ ++++ ++ G V + + + Sbjct: 131 PNDAMELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVTGKGGKERLVPMGENAV 190 Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289 + + + F + ++M F K A AG++ S H + Sbjct: 191 EWIETFLQQGRSELLGETTSDVVFPSKRARQMTRQTFWHRIKHYAVLAGIDTELLSPHVL 250 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + GA + G + + YT A Sbjct: 251 RHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER 290 >gi|196034794|ref|ZP_03102201.1| integrase/recombinase XerD [Bacillus cereus W] gi|195992333|gb|EDX56294.1| integrase/recombinase XerD [Bacillus cereus W] Length = 296 Score = 142 bits (358), Expect = 7e-32, Method: Composition-based stats. Identities = 39/269 (14%), Positives = 98/269 (36%), Gaps = 24/269 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRK---HTPSSAIQFL 137 LA N+ +S+E ++ + ++T HI + ++ K + + + + Sbjct: 16 KGLAKNTVVSYERDLKSYVKYLQKVEQAKSFHEVTRLHIVNFLQHLKENGKSSKTLARHI 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193 S+R ++ +R+ V +P + +E P+ + + + + ++++ G + + Sbjct: 76 ASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSVDEVEALLQTPKMTSVFGVRDK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252 E L +GLR S+ ++ + + ++ + L + + Sbjct: 136 AMLELLYATGLRVSELIALNLEDVHLTMGFVRCVGKGNKERIIPLGSLATEAIQKYIEKG 195 Query: 253 ETFFI----------NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 + N+ +++ F K A +A + K + H +R AT + Sbjct: 196 RRELMGKKVVDALFLNHHGNRLSRQGFWKILKRLAKEANIEKELTPHTLRHSFATHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329 GA + G + + YT + Sbjct: 256 GADLRAVQEMLGHADISTTQIYTHVSKTR 284 >gi|325273831|ref|ZP_08140016.1| site-specific tyrosine recombinase XerD [Pseudomonas sp. TJI-51] gi|324101037|gb|EGB98698.1| site-specific tyrosine recombinase XerD [Pseudomonas sp. TJI-51] Length = 298 Score = 142 bits (358), Expect = 7e-32, Method: Composition-based stats. Identities = 53/281 (18%), Positives = 102/281 (36%), Gaps = 24/281 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESR---K 127 LI ++ + L+ N+R+S+ S + I + R Sbjct: 8 LIDQFLDALWLEKGLSDNTRVSYRSDLALFNGWLHERSVALPDAGRDLILDHLAWRLEQG 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + P S +F++ +R F++ +R++ VAI+P L V+ P+ + ++ D++ Sbjct: 68 YKPRSTARFISGLRGFFRYLLREKLVAIDPTLQVDMPQLGKPLPKSLSEADVEALLQAPD 127 Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 G + R E L GLR ++ + + ++ V + + + Sbjct: 128 LGEAIGQRDRAMLEVLYACGLRVTELVSLALDQVNLRQGVLRVMGKGSKERLVPMGEEAV 187 Query: 243 KLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 L + F + ++M F K A AG++K S H +R Sbjct: 188 VWLERYLRSGRAELLNGRPSDVLFPSLRGEQMTRQTFWHRIKHHARVAGIDKPLSPHTLR 247 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 AT + GA + G + + YT A + RL Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-KARL 287 >gi|167032086|ref|YP_001667317.1| site-specific tyrosine recombinase XerD [Pseudomonas putida GB-1] gi|166858574|gb|ABY96981.1| tyrosine recombinase XerD [Pseudomonas putida GB-1] Length = 298 Score = 142 bits (358), Expect = 8e-32, Method: Composition-based stats. Identities = 54/281 (19%), Positives = 101/281 (35%), Gaps = 24/281 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESR---K 127 LI ++ + L+ N+R+S+ S + + I + R Sbjct: 8 LIDQFLDALWLEKGLSDNTRVSYRSDLALFNGWLQEQAVSLPDAGRELILDHLAWRLDQG 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + P S +FL+ +R F++ +R+ VAI+P L V+ P+ + ++ D++ Sbjct: 68 YKPRSTARFLSGLRGFFRYLLRERLVAIDPTLQVDMPQLGKPLPKSLSEADVEALLQAPD 127 Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 G + R E L GLR ++ + + ++ V + + + Sbjct: 128 LGEAIGQRDRAMLEVLYACGLRVTELVSLTLDQVNLRQGVLRVMGKGSKERLVPMGEEAV 187 Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 L F + ++M F K A AG++K S H +R Sbjct: 188 VWLERYQRDGRAELLNGRPSDVLFPSLRGEQMTRQTFWHRIKHHARVAGIDKPLSPHTLR 247 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 AT + GA + G + + YT A + RL Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-KARL 287 >gi|310815686|ref|YP_003963650.1| integrase/recombinase [Ketogulonicigenium vulgare Y25] gi|308754421|gb|ADO42350.1| integrase/recombinase [Ketogulonicigenium vulgare Y25] Length = 361 Score = 142 bits (358), Expect = 8e-32, Method: Composition-based stats. Identities = 86/333 (25%), Positives = 142/333 (42%), Gaps = 25/333 (7%) Query: 13 KERTRHGKIIYYFRKGHGRRIRLPY--PHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 K R GK YF++ ++LP + F+ AY A + + K + Sbjct: 16 KTVVRRGKTYRYFQRRGFPLVKLPDLPMDDPAFLRAYAEAKSANPEKSP------AAAGS 69 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 L+ KS H+ + +R F + D ++ + G+ R + ++HIR+ + Sbjct: 70 FAALVRAALKSDHYSQSKLATRAMFRRHCDALVEEFGELPARGLRSRHIRANL----PKS 125 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKEDMQQFKSFWSEG 189 +S L + R L + V + N L V PK + G PWT++++ F++ W G Sbjct: 126 TSQGHRLRTWRFLCSFGVATNLLERNEALDVAMPKAKSKGGHPPWTQDEIAAFRTRWPMG 185 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249 S R AFE L +SG R SD+ R G ++ + + + KT + A Sbjct: 186 SATRAAFELLRFSGARISDAVRLGPGMVRGGVLTYRQVKTDGPAHIPWSCPLPDFAAHLS 245 Query: 250 IGKETFFI------------NNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATIS 297 + + + + + A +AG KSAHG+RK AT Sbjct: 246 EDRAIMHHALEALAGQMTYLDARGKARSEKSLGTMIREAAMEAGFKKSAHGLRKSLATEL 305 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 A+ GATAH++ A G +T+ + + YTK ADR R Sbjct: 306 AEGGATAHQISAWTGHETLKEVDHYTKSADRRR 338 >gi|224369851|ref|YP_002604015.1| site-specific recombinase XerD (DNA replication, recombination and repair) [Desulfobacterium autotrophicum HRM2] gi|223692568|gb|ACN15851.1| site-specific recombinase XerD (DNA replication, recombination and repair) [Desulfobacterium autotrophicum HRM2] Length = 297 Score = 142 bits (358), Expect = 8e-32, Method: Composition-based stats. Identities = 41/287 (14%), Positives = 92/287 (32%), Gaps = 29/287 (10%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGV-------- 123 +++++ ++ + ++ ++ + IT + + + Sbjct: 2 VVTQFLQTLSSEKGYSPHTIRAYGGDLTAFLGFCFPGKPVAAITDEQLLKEIRDSETNPV 61 Query: 124 -------ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 +K T + + L++++ F + V + +NP V PK + T Sbjct: 62 RGFLMDLAKKKVTRRTISRRLSALKSFFNYLVVVGKIEVNPAQGVSAPKLPRSIPQFLTV 121 Query: 177 EDMQQFKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GT 231 +++ + R FE +G+R S+ V + ++ + Sbjct: 122 DELFTLLDSIKTRTVVDKRNRAVFELFYSTGMRVSELSNLNVGDIDRESHLVRVRGKGNR 181 Query: 232 IITVELPDGFMKLLAMTPIGKETFFI----NNDKQKMNATQFSIWFKAKATKAGV--NKS 285 V + D +K + + F N D + + + G+ S Sbjct: 182 ERLVPVGDRALKAVDDYRTCIDGEFGALFLNRDAHRFSDSSIRRVLSVLVKACGLGVPVS 241 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R AT DAGA + G ++ + YT RL Sbjct: 242 PHTLRHSFATHMLDAGADLRGIQEILGHASLSSTQIYTHVTY-ARLM 287 >gi|228916729|ref|ZP_04080294.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228935411|ref|ZP_04098229.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228824163|gb|EEM69977.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228842916|gb|EEM87999.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 296 Score = 142 bits (358), Expect = 8e-32, Method: Composition-based stats. Identities = 39/269 (14%), Positives = 97/269 (36%), Gaps = 24/269 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRK---HTPSSAIQFL 137 LA N+ +S+E ++ + ++T HI + ++ K + + + + Sbjct: 16 KGLAKNTVVSYERDLKSYVKYLQKVEQAKSFHEVTRLHIVNFLQHLKENGKSSKTLARHI 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193 S+R ++ +R+ V +P + +E P+ + + + + +++ G + + Sbjct: 76 ASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSVNEVEALLQTPKMTSAFGVRDK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252 E L +GLR S+ ++ + + ++ + L + + Sbjct: 136 AMLELLYATGLRVSELIALNLEDVHLTMGFVRCVGKGNKERIIPLGSLATEAIQKYIEKG 195 Query: 253 ETFFI----------NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 + N+ +++ F K A +A + K + H +R AT + Sbjct: 196 RRELMGKKVVDALFLNHHGNRLSRQGFWKILKRLAKEANIEKELTPHTLRHSFATHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329 GA + G + + YT + Sbjct: 256 GADLRAVQEMLGHADISTTQIYTHVSKTR 284 >gi|206896382|ref|YP_002246413.1| tyrosine recombinase XerD [Coprothermobacter proteolyticus DSM 5265] gi|206738999|gb|ACI18077.1| tyrosine recombinase XerD [Coprothermobacter proteolyticus DSM 5265] Length = 288 Score = 142 bits (357), Expect = 8e-32, Method: Composition-based stats. Identities = 50/286 (17%), Positives = 103/286 (36%), Gaps = 22/286 (7%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRSG-VES 125 + Y + + ++ ++ S Q + + +I + RS + Sbjct: 2 LELYHEYLVKKGKSPHTIKNYISDLMQFQKWFEESTGEQFSPGKITEIDVRSYRSYLINI 61 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 R+ PSS + L ++R W V+Q+ ++ NP VE P T R ++++ + + Sbjct: 62 RQLKPSSIKRKLEAIRKFLDWTVKQDIISKNPAKEVEAPASVTLPPRSLSEKEFLRLRRS 121 Query: 186 WSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF----SIKTQKTGTIITVELPD 239 + + + FE L +G+R S+ C + +Q + ++ K V L Sbjct: 122 FYKEGNERDIAIFEVLANTGIRVSELCSLKLSDVQISERKGKLIVRYGKGQKYREVPLNS 181 Query: 240 GFMKLLAMTPIGKETFFINN----DKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSAT 295 K L + ++ + + K A AGV S H +R A Sbjct: 182 DARKALNEYLKSRADENNERLFLGERGPLTPSGVFRIIKRYARDAGVEVSPHQLRHTFAR 241 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK--GADRIRLGIKNSRRI 339 +GA + G ++ Y K A++ ++ ++ Sbjct: 242 RLLQSGADIVTVQQILGHANLNTTAVYLKPDYAEQEE-AVEKISKL 286 >gi|254374937|ref|ZP_04990418.1| site specific recombinase XerD [Francisella novicida GA99-3548] gi|151572656|gb|EDN38310.1| site specific recombinase XerD [Francisella novicida GA99-3548] Length = 292 Score = 142 bits (357), Expect = 8e-32, Method: Composition-based stats. Identities = 43/280 (15%), Positives = 94/280 (33%), Gaps = 25/280 (8%) Query: 71 LKWLIS-EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--- 126 + + + + L+ N+ S+ + + D + + + + + R Sbjct: 5 VDAFLDNLWLEH----GLSQNTISSYRTDLKFLQNYFAKTDLISLDFEQLYAFISYRSKN 60 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 ++ S + ++++R + W + NP + PK + + T+ D+++ Sbjct: 61 GYSSRSNARMISTLRKFYAWLISTGQTNNNPTAKLTLPKLAKKLPKDMTETDVERLLQAP 120 Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGF 241 G + + E + +GLR S+ + + NI K V + + Sbjct: 121 DMTEDVGIRDKAMLELMYATGLRVSELVGLNIDDIDINIGVIQVMGKGSKERIVPIGEYA 180 Query: 242 MKLLAMTPIGKET----------FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289 ++ L FI+ +++ F K A AG+ + S H + Sbjct: 181 LEYLQKYFAEARMSLSKNFKEKAVFISKHTKRITRQSFWHRIKNYALIAGINTDISPHTL 240 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + GA + G V YT + Sbjct: 241 RHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNR 280 >gi|19552635|ref|NP_600637.1| site-specific tyrosine recombinase XerD [Corynebacterium glutamicum ATCC 13032] gi|62390303|ref|YP_225705.1| site-specific tyrosine recombinase XerD [Corynebacterium glutamicum ATCC 13032] gi|34222909|sp|Q8NQL5|XERD_CORGL RecName: Full=Tyrosine recombinase xerD gi|21324187|dbj|BAB98812.1| Integrase [Corynebacterium glutamicum ATCC 13032] gi|41325640|emb|CAF21429.1| INTEGRASE/RECOMBINASE XERD [Corynebacterium glutamicum ATCC 13032] Length = 304 Score = 142 bits (357), Expect = 8e-32, Method: Composition-based stats. Identities = 52/289 (17%), Positives = 92/289 (31%), Gaps = 32/289 (11%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKH- 128 L + L+ N+ ++ ++ G D R ITT H+ S V+ + Sbjct: 6 LAKTWLTHLAVERGLSANTLSNYRRDVERYCDWLEAAGLDDIRDITTAHVESYVKDLRRG 65 Query: 129 -------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED--- 178 + SSA + L R L K+A+ + VA + V P + + Sbjct: 66 IDGQQALSASSAGRALIVARGLHKFALMEGEVAADVAADVSPPAMGRHLPDTLSINEVAL 125 Query: 179 ----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTII 233 + + R E L +G R S++ V + ++ Sbjct: 126 LIDAIPHSDIATPVDLRDRALVELLYGTGARISEAIGLAVDDVSEMPEVLRITGKGSKQR 185 Query: 234 TVELPDGFMKLLAMT---------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284 V + + F+N ++ K +AG++K Sbjct: 186 IVPFGSMAQQAVREYLVRARPALSKGKSHALFLNQRGGPLSRQSAWAVLKKTVERAGLDK 245 Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330 S H +R AT + GA + G +V + YT AD +R Sbjct: 246 DISPHTLRHSFATHLLEGGADVRVVQELLGHSSVTTTQIYTHITADSLR 294 >gi|325840448|ref|ZP_08167047.1| site-specific recombinase, phage integrase family [Turicibacter sp. HGF1] gi|325490315|gb|EGC92644.1| site-specific recombinase, phage integrase family [Turicibacter sp. HGF1] Length = 371 Score = 142 bits (357), Expect = 9e-32, Method: Composition-based stats. Identities = 40/366 (10%), Positives = 94/366 (25%), Gaps = 39/366 (10%) Query: 16 TRHGKIIYYFRKG-HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 R YY++ G + T A + + T++ Sbjct: 7 KRGSTWSYYYKYKQDGTYKKKEKGGFKTKKDAQHALREALVIFEKQGLVQAATTYTIEEY 66 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGV--ESRKHTPS 131 I+ + ++ L N+ + I + G I +++ + + + S Sbjct: 67 INYWMENVAEIKLRYNTLDLYRRAIRLHINPEIGFLKLNNIKADTLQTFFTTKQKALSDS 126 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 + FK A++Q + NP +E K E + + ++ Sbjct: 127 YINAIRNILNGTFKLAIKQGLILFNPMHQLELHYSKVEKNLEIITTEHLKIILDDISNTR 186 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNI------------------------------ 221 + F L++G R + + Sbjct: 187 YYIPFIISLHTGARRGEILALTWDDIHFETRKITFNKSLLAKDGEGVSLAQTKTKSSIRT 246 Query: 222 --FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279 + K + + N D +N +FS + + Sbjct: 247 ILMTQKLITELQQWQDKQNQNKQLYAEYYYTEHDFVCSNEDGTPINPKRFSTQINRISKR 306 Query: 280 AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRR 338 + H +R AT+ ++ + G + Y+ + + + Sbjct: 307 LNIPIKFHNLRHTHATLLLESDVNIKVIQERLGHSDISTTLNVYSHVTQ--KTEAEAIAK 364 Query: 339 ISSVVD 344 S ++ Sbjct: 365 FESNLN 370 >gi|134298831|ref|YP_001112327.1| phage integrase family protein [Desulfotomaculum reducens MI-1] gi|134051531|gb|ABO49502.1| phage integrase family protein [Desulfotomaculum reducens MI-1] Length = 324 Score = 142 bits (357), Expect = 9e-32, Method: Composition-based stats. Identities = 41/271 (15%), Positives = 94/271 (34%), Gaps = 12/271 (4%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134 ++ + S L+ + + + + ++ITT IR+ + +R S+ Sbjct: 52 LNMFLLSKKMEGLSEKTIDKYRKTILDFAKYV-NKPLKRITTADIRTWLSNRDIKISTVR 110 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194 L +R + + + +E VA++P ++ PK + + ++++ + + Sbjct: 111 YRLAVLRSFYNYLLAEEIVAVDPTRRIKSPKLEKRIPKALNNDELEV-LREGCNTLREKA 169 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKE 253 E +G R + A + S+ K V + L ++ Sbjct: 170 LLEIFYATGCRIGEVFGANKIDINWQERSLVVLGKGNKERIVFIGARAAHSLKKYLNSRQ 229 Query: 254 TFFI------NNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAH 305 Q+++ + FK A + ++K+ H R AT + GA Sbjct: 230 DNEDALFVTEKGKIQRLSVRSIQLIFKKIANRVVIHKNIYPHIFRHTLATALLNHGARLE 289 Query: 306 ELMATYGWKTVDQAETYTKGA-DRIRLGIKN 335 ++ G + Y K + +R +L Sbjct: 290 DVQDLLGHTNPSTTQIYCKVSPERKKLAYNQ 320 >gi|156740074|ref|YP_001430203.1| integrase family protein [Roseiflexus castenholzii DSM 13941] gi|254799355|sp|A7NFG3|XERC_ROSCS RecName: Full=Tyrosine recombinase xerC gi|156231402|gb|ABU56185.1| integrase family protein [Roseiflexus castenholzii DSM 13941] Length = 314 Score = 142 bits (357), Expect = 9e-32, Method: Composition-based stats. Identities = 35/276 (12%), Positives = 91/276 (32%), Gaps = 26/276 (9%) Query: 75 ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGV---ESRK 127 + + + A +L+ N+ ++ + +Q +T + + + R+ Sbjct: 5 VEAFLRHLADERNLSANTIAAYRTDLEQFCEFLHGRRLFAWHDVTHDDVLAFLIDLRERR 64 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + S+ + + +++ F + + V +P ++ PK + R T + + Sbjct: 65 YASSTVARRVAAVKSFFTFLTGRGIVQRDPTERIDSPKVDRDLPRALTPRQVDELLELPL 124 Query: 188 EGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVELPDGF 241 + + E L +G+R S+ V + ++ + + Sbjct: 125 RSPTPERIRDKAMLELLYATGVRVSELVALNVNDVDLERNEVRCIGKNGRVRVLPINGSA 184 Query: 242 MKLLAMTPIGKETF------------FINNDKQKMNATQFSIWFKAKATKAGV-NKSAHG 288 L F+N+ +++ F + K A + G+ + + H Sbjct: 185 ATALEEYFDISRNQLARGSGSSTEALFLNHRGKRLTRQGFWLILKQYAEELGLSDLTPHV 244 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R A +AG + G ++ + YT Sbjct: 245 LRHSFAVHMLNAGFDLRAVQELLGHTSISTTQIYTH 280 >gi|229075797|ref|ZP_04208774.1| Tyrosine recombinase xerD [Bacillus cereus Rock4-18] gi|229098560|ref|ZP_04229501.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-29] gi|229104696|ref|ZP_04235358.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-28] gi|229117586|ref|ZP_04246958.1| Tyrosine recombinase xerD [Bacillus cereus Rock1-3] gi|228665906|gb|EEL21376.1| Tyrosine recombinase xerD [Bacillus cereus Rock1-3] gi|228678760|gb|EEL32975.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-28] gi|228684882|gb|EEL38819.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-29] gi|228707349|gb|EEL59545.1| Tyrosine recombinase xerD [Bacillus cereus Rock4-18] Length = 296 Score = 142 bits (357), Expect = 9e-32, Method: Composition-based stats. Identities = 41/271 (15%), Positives = 101/271 (37%), Gaps = 25/271 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRK---HTPSSAIQFL 137 LA N+ +S+E ++ + + ++T HI + ++ K + + + + Sbjct: 16 KGLAKNTVVSYERDLKSYVKYLQNVEQMKTFHEVTRLHIVNFLQYLKENGKSSKTLARHI 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193 S+R ++ +R+ V +P + +E P+ + + + + ++++ G + + Sbjct: 76 ASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSIDEVEALLQTPKMTSAFGIRDK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252 E L +GLR S+ ++ + + ++ + L + + Sbjct: 136 AMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNKERIIPLGSLATEAIQKYIEKG 195 Query: 253 ETFFI----------NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 + N+ +++ F K A +A + K + H +R AT + Sbjct: 196 RRELMGKKVVDALFLNHHGNRLSRQGFWKILKRLAKEANIEKELTPHTLRHSFATHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331 GA + G + + YT + RL Sbjct: 256 GADLRAVQEMLGHADISTTQIYTH-VSKARL 285 >gi|308176942|ref|YP_003916348.1| tyrosine recombinase subunit XerD [Arthrobacter arilaitensis Re117] gi|307744405|emb|CBT75377.1| tyrosine recombinase subunit XerD [Arthrobacter arilaitensis Re117] Length = 307 Score = 142 bits (357), Expect = 9e-32, Method: Composition-based stats. Identities = 52/292 (17%), Positives = 94/292 (32%), Gaps = 32/292 (10%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHI--------RSG 122 + Y + LA N+ S+ + + G +KIT I R Sbjct: 9 LKRYLQHLAIERGLAENTLASYRRDLLRYVDTMQAAGVEQPQKITELAISGYLQDLSRGN 68 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + + + S + ++R L K+ + NP ++ P + + + + Sbjct: 69 EKHKALSARSVARHSVAIRQLHKYWELEGICVPNPAREIQPPAIGQSLPKAISIDQVTSI 128 Query: 183 KSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVE 236 G + R EFL +G R S+ V L ++ K V Sbjct: 129 LESVSIETPAGLRDRAILEFLYSTGARISEVVDLDVDDLHFAQDAVVRLFGKGSKERVVP 188 Query: 237 LPDGFMKL-----------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--N 283 + + LA G F+N +++ + A +AG+ Sbjct: 189 VGGYAQRAVSDYLVRARPSLAAKGKGTPALFLNQRGGRLSRQSVWLLLSKAAERAGITTE 248 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIK 334 S H +R AT + GA + G +V + YTK D +R + Sbjct: 249 VSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTKVTVDSLREAYQ 300 >gi|226951750|ref|ZP_03822214.1| site-specific tyrosine recombinase [Acinetobacter sp. ATCC 27244] gi|226837540|gb|EEH69923.1| site-specific tyrosine recombinase [Acinetobacter sp. ATCC 27244] Length = 306 Score = 142 bits (357), Expect = 9e-32, Method: Composition-based stats. Identities = 45/281 (16%), Positives = 94/281 (33%), Gaps = 19/281 (6%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130 + +R +++ ++R ++ S Q + +++ I + +P Sbjct: 20 FLQGFRDYLVAQTVSPHTRNAYLSDLIQCSELHRTASLPQWSSEDIGDVLIELTKAGKSP 79 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-- 188 S + L+++R +K+ Q+ NP S PK + +++D++ + Sbjct: 80 RSIARCLSALRQFYKFLREQKLREDNPVASHHSPKIGRALPKDLSEQDVEALINAPDIST 139 Query: 189 --GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLL 245 G + R FE L GLR S+ ++ + ++ V L + Sbjct: 140 TLGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGFVRITGKGNKERLVPLGQYACDWI 199 Query: 246 AMT---------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 + F+ M+ F K A +A + S H +R A Sbjct: 200 EKYLAESRPQLYKSNTDYLFLTQHGGIMSRQNFWYAIKRYALQANIQAELSPHTLRHAFA 259 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 T + GA + G + + YT A + + Sbjct: 260 THLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQHRMQALHH 300 >gi|224372664|ref|YP_002607036.1| phage integrase [Nautilia profundicola AmH] gi|223589882|gb|ACM93618.1| phage integrase [Nautilia profundicola AmH] Length = 275 Score = 142 bits (357), Expect = 9e-32, Method: Composition-based stats. Identities = 41/260 (15%), Positives = 87/260 (33%), Gaps = 18/260 (6%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132 + + + ++ N+ +++ Q + I S + S + S Sbjct: 4 YLEAFLEYLQINKGVSKNTYEAYKRDLLQFEEYI-KKPIIEADNMDIISFLSSIGNK-RS 61 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK----EDMQQFKSFWSE 188 + L+S+ F +A + +++ K + TK ++ K Sbjct: 62 LNRKLSSINSFFDFAYKHGMSDTKH--KIKQAKIPKTLPKFLTKEEILNAIKNIKPEKWF 119 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP----DGFMKL 244 + + F+ +GLR S++ + ++N + K V + D + Sbjct: 120 DLRDKSLILFIYATGLRISEALNTKISDIENGWVKVTMAKGEKQRIVPIAKVALDAIEEY 179 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATA 304 L P E F+N D + ++ K +N S H +R AT GA Sbjct: 180 LKKRPCQSEYLFVNKDCKPLSRISAFNITKKY-----LNVSPHVLRHSFATALVLGGADL 234 Query: 305 HELMATYGWKTVDQAETYTK 324 + G +++ + YT Sbjct: 235 RVVQELLGHSSLNTTQIYTH 254 >gi|172040772|ref|YP_001800486.1| integrase/recombinase [Corynebacterium urealyticum DSM 7109] gi|171852076|emb|CAQ05052.1| integrase/recombinase [Corynebacterium urealyticum DSM 7109] Length = 303 Score = 142 bits (357), Expect = 9e-32, Method: Composition-based stats. Identities = 48/281 (17%), Positives = 88/281 (31%), Gaps = 24/281 (8%) Query: 76 SEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT----P 130 + + +L+ N+ S+ D+ + G ++ T I S + S Sbjct: 14 ERWLRHLRLERNLSRNTLDSYRRDTDRYLAWLGARSVTELNTGDIESFMASLAKGEGLAA 73 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 S+ + L ++R ++ + + V RP + + + ++ Sbjct: 74 STRARILAAVRNFHRFLTGEGVTEGDVADDVARPGQAASIPKALSIAEVTAILESCPNDD 133 Query: 191 -------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFM 242 + R E L +G R S+ V + I K V + D + Sbjct: 134 AASLIQIRDRALLEMLYSTGARVSELLGLDVDDVDPTEKLIIVRGKGSKERVVPVGDPAL 193 Query: 243 KLLAMTPIGKETFFI---------NNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKF 292 L + F N + +M + + KAGV S H R Sbjct: 194 DALQHYLVRVRPAFNKKGSAALFLNRNGGRMGRQSAFNMVSSVSEKAGVAGVSPHSFRHS 253 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLG 332 AT + GA + G V + YTK + D +R Sbjct: 254 FATHLLEGGADIRVVQELLGHSNVVTTQIYTKVSPDHLREA 294 >gi|332175380|gb|AEE24634.1| tyrosine recombinase XerD [Glaciecola agarilytica 4H-3-7+YE-5] Length = 301 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 45/300 (15%), Positives = 96/300 (32%), Gaps = 33/300 (11%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRK 127 +I ++ + L+ N+ ++ S + I T+ I + R Sbjct: 9 AVIEQFLDTIWLEKGLSENTLEAYRSDLTKFSDYLNKQLPHTHLLDIQTEDINQYMAHRY 68 Query: 128 HTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + S+ + L+S R + + +P ++ PK + +++ + + Sbjct: 69 DSGLTERSSARCLSSFRRFSGYMLAHGLREDDPVSRMQNPKLSKPLPKTLSEQQVDDLLN 128 Query: 185 FWSEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPD 239 + + E L +GLR ++ V L + ++ V L + Sbjct: 129 APQTDDPIHLRDKAMLEVLYATGLRVTELVTLRVGQLSVSQGVVRVTGKGNKERLVPLGE 188 Query: 240 GFMKLLAMT---------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHG 288 + L+ + F +N M F K A +A + + S H Sbjct: 189 EALDWLSKYLKEARGALLRNESDVLFPSNRGTIMTRQTFWHRIKFHAAQANITSDLSPHT 248 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 +R AT + GA + G + + YT + R+ +V + P Sbjct: 249 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHV---------ATARLQELVANHHP 299 >gi|229163028|ref|ZP_04290984.1| Tyrosine recombinase xerD [Bacillus cereus R309803] gi|228620434|gb|EEK77304.1| Tyrosine recombinase xerD [Bacillus cereus R309803] Length = 296 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 39/269 (14%), Positives = 99/269 (36%), Gaps = 24/269 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRK---HTPSSAIQFL 137 LA N+ +S+E ++ + + ++T HI + ++ K + + + + Sbjct: 16 KGLAKNTVVSYERDLKSYVKYLQNVEQTKTFHEVTRLHIVNFLQHLKENGKSSKTLARHI 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193 S+R ++ +R+ V +P + +E P+ + + + + ++++ G + + Sbjct: 76 ASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSVDEVEALLQTPKMTSAFGVRDK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252 E L +GLR S+ ++ + + ++ + L + + Sbjct: 136 AMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNKERIIPLGSLATEAIQKYIEKG 195 Query: 253 ETFFI----------NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 + N+ +++ F K A +A + K + H +R AT + Sbjct: 196 RRELMGKKVVDALFLNHHGNRLSRQGFWKILKRLAKEANIEKELTPHTLRHSFATHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329 GA + G + + YT + Sbjct: 256 GADLRAVQEMLGHADISTTQIYTHVSKTR 284 >gi|30264167|ref|NP_846544.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str. Ames] gi|47778274|ref|YP_020956.2| site-specific tyrosine recombinase XerD [Bacillus anthracis str. 'Ames Ancestor'] gi|49186997|ref|YP_030249.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str. Sterne] gi|49480325|ref|YP_038149.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis serovar konkukian str. 97-27] gi|65321483|ref|ZP_00394442.1| COG4974: Site-specific recombinase XerD [Bacillus anthracis str. A2012] gi|118479292|ref|YP_896443.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis str. Al Hakam] gi|165871247|ref|ZP_02215897.1| integrase/recombinase XerD [Bacillus anthracis str. A0488] gi|167633747|ref|ZP_02392071.1| integrase/recombinase XerD [Bacillus anthracis str. A0442] gi|167639424|ref|ZP_02397695.1| integrase/recombinase XerD [Bacillus anthracis str. A0193] gi|170687265|ref|ZP_02878483.1| integrase/recombinase XerD [Bacillus anthracis str. A0465] gi|170705812|ref|ZP_02896275.1| integrase/recombinase XerD [Bacillus anthracis str. A0389] gi|177652642|ref|ZP_02935058.1| integrase/recombinase XerD [Bacillus anthracis str. A0174] gi|190565945|ref|ZP_03018864.1| integrase/recombinase XerD [Bacillus anthracis Tsiankovskii-I] gi|196038584|ref|ZP_03105892.1| integrase/recombinase XerD [Bacillus cereus NVH0597-99] gi|196047216|ref|ZP_03114432.1| integrase/recombinase XerD [Bacillus cereus 03BB108] gi|218905229|ref|YP_002453063.1| integrase/recombinase XerD [Bacillus cereus AH820] gi|225866075|ref|YP_002751453.1| integrase/recombinase XerD [Bacillus cereus 03BB102] gi|227816868|ref|YP_002816877.1| integrase/recombinase XerD [Bacillus anthracis str. CDC 684] gi|228929139|ref|ZP_04092166.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228947809|ref|ZP_04110096.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229093151|ref|ZP_04224269.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-42] gi|229123612|ref|ZP_04252807.1| Tyrosine recombinase xerD [Bacillus cereus 95/8201] gi|229186335|ref|ZP_04313500.1| Tyrosine recombinase xerD [Bacillus cereus BGSC 6E1] gi|229604915|ref|YP_002868390.1| integrase/recombinase XerD [Bacillus anthracis str. A0248] gi|254683858|ref|ZP_05147718.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str. CNEVA-9066] gi|254721693|ref|ZP_05183482.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str. A1055] gi|254736205|ref|ZP_05193911.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str. Western North America USA6153] gi|254744094|ref|ZP_05201777.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str. Kruger B] gi|254754126|ref|ZP_05206161.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str. Vollum] gi|254758184|ref|ZP_05210211.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str. Australia 94] gi|301055587|ref|YP_003793798.1| tyrosine recombinase [Bacillus anthracis CI] gi|30258812|gb|AAP28030.1| integrase/recombinase XerD [Bacillus anthracis str. Ames] gi|47551979|gb|AAT33431.2| integrase/recombinase XerD [Bacillus anthracis str. 'Ames Ancestor'] gi|49180924|gb|AAT56300.1| integrase/recombinase XerD [Bacillus anthracis str. Sterne] gi|49331881|gb|AAT62527.1| integrase/recombinase (tyrosine recombinase) [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118418517|gb|ABK86936.1| tyrosine recombinase XerD subunit [Bacillus thuringiensis str. Al Hakam] gi|164713166|gb|EDR18693.1| integrase/recombinase XerD [Bacillus anthracis str. A0488] gi|167512483|gb|EDR87858.1| integrase/recombinase XerD [Bacillus anthracis str. A0193] gi|167531153|gb|EDR93840.1| integrase/recombinase XerD [Bacillus anthracis str. A0442] gi|170129352|gb|EDS98216.1| integrase/recombinase XerD [Bacillus anthracis str. A0389] gi|170668882|gb|EDT19627.1| integrase/recombinase XerD [Bacillus anthracis str. A0465] gi|172081977|gb|EDT67045.1| integrase/recombinase XerD [Bacillus anthracis str. A0174] gi|190562864|gb|EDV16830.1| integrase/recombinase XerD [Bacillus anthracis Tsiankovskii-I] gi|196021965|gb|EDX60656.1| integrase/recombinase XerD [Bacillus cereus 03BB108] gi|196030307|gb|EDX68906.1| integrase/recombinase XerD [Bacillus cereus NVH0597-99] gi|218535959|gb|ACK88357.1| integrase/recombinase XerD [Bacillus cereus AH820] gi|225786005|gb|ACO26222.1| integrase/recombinase XerD [Bacillus cereus 03BB102] gi|227002405|gb|ACP12148.1| integrase/recombinase XerD [Bacillus anthracis str. CDC 684] gi|228597129|gb|EEK54784.1| Tyrosine recombinase xerD [Bacillus cereus BGSC 6E1] gi|228659747|gb|EEL15392.1| Tyrosine recombinase xerD [Bacillus cereus 95/8201] gi|228690125|gb|EEL43919.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-42] gi|228811796|gb|EEM58130.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228830429|gb|EEM76039.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229269323|gb|ACQ50960.1| integrase/recombinase XerD [Bacillus anthracis str. A0248] gi|300377756|gb|ADK06660.1| tyrosine recombinase [Bacillus cereus biovar anthracis str. CI] Length = 296 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 39/269 (14%), Positives = 98/269 (36%), Gaps = 24/269 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRK---HTPSSAIQFL 137 LA N+ +S+E ++ + ++T HI + ++ K + + + + Sbjct: 16 KGLAKNTVVSYERDLKSYVKYLQKVEQAKSFHEVTRLHIVNFLQHLKENGKSSKTLARHI 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193 S+R ++ +R+ V +P + +E P+ + + + + ++++ G + + Sbjct: 76 ASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSVDEVEALLQTPKMTSAFGVRDK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252 E L +GLR S+ ++ + + ++ + L + + Sbjct: 136 AMLELLYATGLRVSELIALNLEDVHLTMGFVRCVGKGNKERIIPLGSLATEAIQKYIEKG 195 Query: 253 ETFFI----------NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 + N+ +++ F K A +A + K + H +R AT + Sbjct: 196 RRELMGKKVVDALFLNHHGNRLSRQGFWKILKRLAKEANIEKELTPHTLRHSFATHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329 GA + G + + YT + Sbjct: 256 GADLRAVQEMLGHADISTTQIYTHVSKTR 284 >gi|77457252|ref|YP_346757.1| site-specific tyrosine recombinase XerD [Pseudomonas fluorescens Pf0-1] gi|77381255|gb|ABA72768.1| integrase/recombinase [Pseudomonas fluorescens Pf0-1] Length = 298 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 51/291 (17%), Positives = 108/291 (37%), Gaps = 24/291 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT--TKHIRSGVESR---K 127 LI ++ + L+ N+R ++ S D I + I + R Sbjct: 8 LIDQFLDALWLEKGLSDNTRDAYRSDLALFNGWLQDKGLELINAGRELILDHLAWRLEQN 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + P S +FL+ +R +++ +R++ ++++P L V+ P+ + ++ D++ Sbjct: 68 YKPRSTARFLSGVRGFYRYLLREKLISVDPTLRVDMPQLGRPLPKSLSEADVEALLKAPD 127 Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 G + R E L GLR ++ ++ + ++ V + + + Sbjct: 128 LSEAIGQRDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEEAI 187 Query: 243 KLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290 + + F + ++M F K +A AG++KS H +R Sbjct: 188 VWVERYLRDGRGELLGGRPSDVLFPSQRGEQMTRQTFWHRIKHQAKVAGISKSLSPHTLR 247 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 AT + GA + G + + YT A R RL +++ Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQDLHAKHHPR 297 >gi|208779461|ref|ZP_03246806.1| tyrosine recombinase XerD [Francisella novicida FTG] gi|208744422|gb|EDZ90721.1| tyrosine recombinase XerD [Francisella novicida FTG] Length = 292 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 43/280 (15%), Positives = 94/280 (33%), Gaps = 25/280 (8%) Query: 71 LKWLIS-EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--- 126 + + + + L+ N+ S+ + + D + + + + + R Sbjct: 5 VDAFLDNLWLEH----GLSQNTISSYRTDLKFLQNYFAKTDLISLDFEQLYAFISYRSKN 60 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 ++ S + ++++R + W + NP + PK + + T+ D+++ Sbjct: 61 GYSSRSNARMISTLRKFYAWLISTGQTNNNPTAKLTLPKLAKKLPKDMTETDVERLLQAP 120 Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGF 241 G + + E + +GLR S+ + + NI K V + + Sbjct: 121 DMTEDVGIRDKAMLELMYATGLRVSELVGLNIDDIDINIGVIQVMGKGSKERIVPIGEYA 180 Query: 242 MKLLAMTPIGKET----------FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289 ++ L FI+ +++ F K A AG+ + S H + Sbjct: 181 LEYLQKYFAEARMSLSKNFKEKAVFISKHAKRITRQSFWHRIKNYALIAGINTDISPHTL 240 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + GA + G V YT + Sbjct: 241 RHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNR 280 >gi|312903284|ref|ZP_07762464.1| tyrosine recombinase XerD [Enterococcus faecalis TX0635] gi|310633160|gb|EFQ16443.1| tyrosine recombinase XerD [Enterococcus faecalis TX0635] Length = 296 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 43/287 (14%), Positives = 97/287 (33%), Gaps = 27/287 (9%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRK 127 + L+ Y L+ N+R S+E + + G + ++ I ++S Sbjct: 3 EQLVD-YLHYLQIERGLSNNTRRSYERDLKKYVAFLQEQGLHSWDEVDRYMITEFLQSLH 61 Query: 128 ---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQ 180 +S I+ ++S+R ++ ++ NP ++ PK+ + + ++ ++ Sbjct: 62 EEQQASASVIRMISSLRGFHQFLRQERLSEHNPMQHIDSPKKVQKLPSTLSVDEVTRLIE 121 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------------NNIFSIKTQK 228 + G + R E + +GLR S+ + L + I Sbjct: 122 TPDTSKPLGMRNRAILEVMYATGLRVSELIEIKLGDLHLSIGLLQTIGKGDKERIIPLGD 181 Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286 + L + F+N+ + ++ K +A + K + Sbjct: 182 YAIQWIERYMNEARPQLIKNHPNETHLFVNHHGEPLSRQGIWKNLKRIVREARIEKNITP 241 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 H +R AT + GA + G + + YT + R+ Sbjct: 242 HTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITKQ-RMAD 287 >gi|118498126|ref|YP_899176.1| site-specific recombinase [Francisella tularensis subsp. novicida U112] gi|194323353|ref|ZP_03057137.1| tyrosine recombinase XerD [Francisella tularensis subsp. novicida FTE] gi|254373477|ref|ZP_04988965.1| site specific recombinase XerD [Francisella tularensis subsp. novicida GA99-3549] gi|118424032|gb|ABK90422.1| site-specific recombinase [Francisella novicida U112] gi|151571203|gb|EDN36857.1| site specific recombinase XerD [Francisella novicida GA99-3549] gi|194322717|gb|EDX20197.1| tyrosine recombinase XerD [Francisella tularensis subsp. novicida FTE] Length = 292 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 43/280 (15%), Positives = 96/280 (34%), Gaps = 25/280 (8%) Query: 71 LKWLIS-EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--- 126 + + + + L+ N+ S+ + + D + + + + + R Sbjct: 5 VDAFLDNLWLEH----GLSQNTISSYRTDLKFLQNYFAKTDLISLDFEQLYAFISYRSKN 60 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 ++ S + ++++R + W + NP + PK + + T+ D+++ Sbjct: 61 GYSSRSNARMISTLRKFYAWLISTGQTNNNPTAKLTLPKLAKKLPKDMTETDVERLLQAP 120 Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGF 241 G + + E + +GLR S+ + + NI K V + + Sbjct: 121 DMTEDVGIRDKAMLELMYATGLRVSELVGLNIDDIDINIGVIQVMGKGSKERIVPIGEYA 180 Query: 242 MKLLAMTP----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289 ++ L ++ FI+ +++ F K A AG+ + S H + Sbjct: 181 LEYLQKYFAEARTSLSKNFKEKAVFISKHAKRITRQSFWHRIKNYALIAGINTDISPHTL 240 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + GA + G V YT + Sbjct: 241 RHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNR 280 >gi|229086660|ref|ZP_04218828.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-44] gi|228696607|gb|EEL49424.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-44] Length = 296 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 40/269 (14%), Positives = 99/269 (36%), Gaps = 24/269 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRK---HTPSSAIQFL 137 LA N+ +S+E ++ + + ++T HI + ++ K + + + + Sbjct: 16 KGLAKNTVVSYERDLKSYVKYLQNVEQIKTFHEVTRIHIVNFLQYLKENGKSSKTLARHI 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193 S+R ++ +R+ V +P + +E P+ + + + + +++ G + + Sbjct: 76 ASIRSFHQFLLRERVVEHDPSVHIETPQGERKLPKVLSVGEVEALLQTPKATSAFGIRDK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252 E L +GLR S+ ++ + + ++ + L + + Sbjct: 136 AMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNKERIIPLGSLATEAIQRYIEKG 195 Query: 253 ETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 F+N+ +++ F K A +A + K + H +R AT + Sbjct: 196 RRELVGKKTVDALFLNHHGNRLSRQGFWKILKRLAKEANIEKELTPHTLRHSFATHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329 GA + G + + YT + Sbjct: 256 GADLRAVQEMLGHADISTTQIYTHVSKTR 284 >gi|261868581|ref|YP_003256503.1| site-specific tyrosine recombinase XerD [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413913|gb|ACX83284.1| tyrosine recombinase XerD [Aggregatibacter actinomycetemcomitans D11S-1] Length = 297 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 39/282 (13%), Positives = 87/282 (30%), Gaps = 24/282 (8%) Query: 72 KWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVES 125 L+ + L+ N+ S+ + + + Sbjct: 4 SALLDLFLNELWIGKGLSPNTVESYRLDLTALCDWLEARHLSLLGLDAVDLQAFLGERVE 63 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + + +S + L++MR LF++ +++Y +P + PK + + T++ + + Sbjct: 64 QGYKATSTARLLSAMRKLFQYLYQEKYRTDDPSAVLSSPKLPSRLPKYLTEQQVTDLLNV 123 Query: 186 W----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDG 240 + + E L +GLR ++ + N ++ V + + Sbjct: 124 QSLEQPIELRDKAMLELLYATGLRVTELVSLNTDSINLNQGVVRVIGKGKKERIVPMGEE 183 Query: 241 FMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287 + + F + +M F K A A ++ S H Sbjct: 184 ATHWVKQFMLFARPMLLDGQSSDVLFPSRRGTQMTRQTFWHRIKHYAVLAEIDSEMLSPH 243 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R AT + GA + G + + YT A Sbjct: 244 VLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKER 285 >gi|326202104|ref|ZP_08191974.1| tyrosine recombinase XerD [Clostridium papyrosolvens DSM 2782] gi|325987899|gb|EGD48725.1| tyrosine recombinase XerD [Clostridium papyrosolvens DSM 2782] Length = 294 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 43/269 (15%), Positives = 100/269 (37%), Gaps = 22/269 (8%) Query: 83 HWGSLAVNSRISFESYFDQIIRKSGDFDYRKI------TTKHIRSGVESRKHTPSSAIQF 136 L++N+ S++ +Q I + + I T ++ + S+ + Sbjct: 14 RDKRLSLNTLQSYKRDIEQYITYLKEINVTNIANTNKTTVIAYLLHLQKKGRATSTISRN 73 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----QFKSFWSEGSQP 192 L S+R +++ + + + +P +E PK + + + + ++++ Q K +G + Sbjct: 74 LASIRSFYQFLYKDKVIDNDPTSELESPKVEKKLPQILSTQEVELLLEQPKCLDLKGIRD 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252 + E L +G+R S+ + + + I+ K T+ + M + Sbjct: 134 KAMLELLYATGIRVSELISLNLDDINFELGFIRCNKGTRERTIPIGSISMAAVHEYLDKS 193 Query: 253 ETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 F F+N + +++ F K +A +NK + H +R A + Sbjct: 194 RNFLIQDSQETALFVNVNGKRLTRQGFWKIIKHYKNQAKINKDITPHTLRHSFAAHLLEN 253 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329 GA + G + + Y + A Sbjct: 254 GADLRSIQEMLGHSDISSTQIYAQIAKNK 282 >gi|52141402|ref|YP_085426.1| site-specific tyrosine recombinase XerD [Bacillus cereus E33L] gi|228987282|ref|ZP_04147403.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229157674|ref|ZP_04285749.1| Tyrosine recombinase xerD [Bacillus cereus ATCC 4342] gi|51974871|gb|AAU16421.1| integrase/recombinase (tyrosine recombinase) [Bacillus cereus E33L] gi|228625631|gb|EEK82383.1| Tyrosine recombinase xerD [Bacillus cereus ATCC 4342] gi|228772511|gb|EEM20956.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 296 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 39/269 (14%), Positives = 98/269 (36%), Gaps = 24/269 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRK---HTPSSAIQFL 137 LA N+ +S+E ++ + ++T HI + ++ K + + + + Sbjct: 16 KGLAKNTVVSYERDLKSYVKYLQKVEQAKSFHEVTRLHIVNFLQHLKENGKSSKTLARHI 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193 S+R ++ +R+ V +P + +E P+ + + + + ++++ G + + Sbjct: 76 ASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSVDEVEALLQTPKMTSAFGVRDK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252 E L +GLR S+ ++ + + ++ + L + + Sbjct: 136 AMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNKERIIPLGSLATEAIQKYIEKG 195 Query: 253 ETFFI----------NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 + N+ +++ F K A +A + K + H +R AT + Sbjct: 196 RRELMGKKVVDALFLNHHGNRLSRQGFWKILKRLAKEANIEKELTPHTLRHSFATHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329 GA + G + + YT + Sbjct: 256 GADLRAVQEMLGHADISTTQIYTHVSKTR 284 >gi|199598714|ref|ZP_03212128.1| Integrase [Lactobacillus rhamnosus HN001] gi|229552169|ref|ZP_04440894.1| integrase XerD [Lactobacillus rhamnosus LMS2-1] gi|258508373|ref|YP_003171124.1| tyrosine recombinase XerD [Lactobacillus rhamnosus GG] gi|258539584|ref|YP_003174083.1| tyrosine recombinase xerD [Lactobacillus rhamnosus Lc 705] gi|199590402|gb|EDY98494.1| Integrase [Lactobacillus rhamnosus HN001] gi|229314471|gb|EEN80444.1| integrase XerD [Lactobacillus rhamnosus LMS2-1] gi|257148300|emb|CAR87273.1| Tyrosine recombinase xerD [Lactobacillus rhamnosus GG] gi|257151260|emb|CAR90232.1| Tyrosine recombinase xerD [Lactobacillus rhamnosus Lc 705] gi|259649687|dbj|BAI41849.1| integrase [Lactobacillus rhamnosus GG] Length = 293 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 43/282 (15%), Positives = 100/282 (35%), Gaps = 22/282 (7%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKI--TTKHIRSGVESRKHT- 129 LI+++ LA +++S++ + D I++ ++ + T Sbjct: 4 LIADFIHYLDVERGLARTTQVSYQQDLTTFMAWLSDQKQTTFPEDFGVIQAFLKHQNDTK 63 Query: 130 -PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKS 184 P+S + ++++R +++ +R+ + +P ++ PK+ + + M + + Sbjct: 64 APASVSRMISALRKFYRFLLREGAIKSDPMTKIDTPKKAQHLPATLSGTEIDALMAKPDT 123 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMK 243 G + R FE + +GLR S+ + L + T K V + Sbjct: 124 TKPLGLRDRAIFELMYATGLRVSEVVGLRLDQLHLAMNLLQVTGKGDKERLVPISPQAAD 183 Query: 244 LLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291 + + F+N + KA G+ K + H +R Sbjct: 184 WVNRYLQESRPRLIKHQQPKAVFVNFHGHALTRQAIWKNLKAYIASVGIEKDVTPHTLRH 243 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 AT + GA + G + + YT +++ + + Sbjct: 244 SFATRLLENGADLRVVQELLGHSDISTTQIYTHLSNQHLVAV 285 >gi|293610050|ref|ZP_06692351.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827282|gb|EFF85646.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 306 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 44/275 (16%), Positives = 90/275 (32%), Gaps = 19/275 (6%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130 + +R +++ ++R ++ S Q + T+ +I + +P Sbjct: 20 FLQGFRDYLVAQTVSPHTRNAYLSDLIQCSELHKKSLLPEWTSDNIADVLIELTKVGKSP 79 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 S + L+++R +K+ Q+ + NP + PK + ++ED++ + Sbjct: 80 RSIARCLSALRQFYKFLREQKLRSDNPVATHHSPKIGRALPKDLSEEDVEALIQAPDINT 139 Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLL 245 + R FE L GLR S+ ++ + ++ V L + + Sbjct: 140 ALGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGYLRITGKGNKERLVPLGQFACEWV 199 Query: 246 AMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 M+ F K A +A + S H +R A Sbjct: 200 ERYLQDARPQLYKSSTDYLFLTQHGGIMSRQNFWYAIKRYALQANIQAELSPHTLRHAFA 259 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 T + GA + G + + YT A Sbjct: 260 THLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR 294 >gi|62258790|gb|AAX77820.1| unknown protein [synthetic construct] Length = 327 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 43/280 (15%), Positives = 96/280 (34%), Gaps = 21/280 (7%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--- 126 + + + + L+ N+ S+ + + D + + + + + R Sbjct: 27 VSSAVDAFLDNLWLEHGLSQNTISSYRTDLKFLQNYFAKTDLISLDFEQLYAFISYRSKN 86 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 ++ S + ++++R + W + NP + PK + + T+ D+++ Sbjct: 87 GYSSHSNARMISTLRKFYAWLISTGQTNNNPTAKLTLPKLAKKLPKDMTETDVERLLQAP 146 Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGF 241 G + + E + +GLR S+ + + NI K V + + Sbjct: 147 DMTEDVGIRDKAMLELMYATGLRVSELVGLNIDDIDINIGVIQVMGKGSKERIVPIGEYA 206 Query: 242 MKLLAMTP----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289 ++ L ++ FI+ +++ F K A AG+ + S H + Sbjct: 207 LEYLQKYFAEARRSLSENFKEKAVFISKHAKRITRQSFWHRIKNYALIAGINTDISPHTL 266 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + GA + G V YT + Sbjct: 267 RHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNR 306 >gi|301063083|ref|ZP_07203644.1| tyrosine recombinase XerD [delta proteobacterium NaphS2] gi|300442803|gb|EFK07007.1| tyrosine recombinase XerD [delta proteobacterium NaphS2] Length = 293 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 49/281 (17%), Positives = 100/281 (35%), Gaps = 23/281 (8%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESRKH- 128 LI E+ LA N+ ++ + + + + + IR + + H Sbjct: 3 DLIDEFITYLRVERGLAENTVHAYSRDLIRFVAYLENRNITPVDCSRTAIRDYLGTLTHE 62 Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---- 183 + S + +++++ +++ V + + NP VE P+ + + + +++++ Sbjct: 63 LSKRSRARNVSAIKTFYRFLVSEGKMEENPARLVETPRIQQKLPDILSVDEVERLLLQPD 122 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFM 242 G + R E L +GLR S+ R + + +K K V + Sbjct: 123 GATPIGQRDRAMLELLYATGLRVSELVRLRLLDVNMEAGFVKALGKGSKERMVPFGEKAR 182 Query: 243 KLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290 + L F+N + + F K AG+ K+ HG+R Sbjct: 183 QALKTYLSDGRPALLKEGHPPYLFLNFRGKPLTRQGFWKIIKNHGIMAGIKKNIKPHGLR 242 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 A+ +AGA + G + + YT R RL Sbjct: 243 HSFASHLLEAGADLRSVQLMLGHADITTTQIYTHVT-RERL 282 >gi|259909555|ref|YP_002649911.1| Tyrosine recombinase [Erwinia pyrifoliae Ep1/96] gi|224965177|emb|CAX56709.1| Tyrosine recombinase [Erwinia pyrifoliae Ep1/96] Length = 309 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 42/281 (14%), Positives = 94/281 (33%), Gaps = 24/281 (8%) Query: 73 WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESR 126 LI ++ + +LA N+ S+ + + + + Sbjct: 17 DLIEQFLDALWIERNLAQNTVDSYRLDLRSLGDWLAHQQLSLLNVEVFNLQEFLAQRLEG 76 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + +S+ + L++MR LF++ R++ +P + PK + ++ +++ Sbjct: 77 GYKATSSARLLSAMRRLFQYLYREKLREDDPSALLSSPKLPQRLPKDLSEAQVERLLQAP 136 Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 + + E L +GLR ++ + + ++ V + + Sbjct: 137 CLEQPIELRDKAMLELLYATGLRVTELVGLTLSDISLRQGVVRVIGKGNKERLVPMGEEA 196 Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 + + + F +N ++M F K AT AG++ S H Sbjct: 197 VHWIEQYIEYGRPWLLNGQTIDVLFPSNRAKQMTRQTFWHRIKHYATLAGIDSDKLSPHV 256 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R AT + GA + G + + YT A Sbjct: 257 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 297 >gi|238763216|ref|ZP_04624181.1| Tyrosine recombinase xerD [Yersinia kristensenii ATCC 33638] gi|238698489|gb|EEP91241.1| Tyrosine recombinase xerD [Yersinia kristensenii ATCC 33638] Length = 299 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 47/287 (16%), Positives = 100/287 (34%), Gaps = 25/287 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRK 127 LI ++ + +LA N+ S+ + D + + + Sbjct: 8 LIEQFLDALWLERNLAENTLASYRLDLHALSGWLEHHDSDLLRAGSQDLQSFLAERIEGG 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + +S+ + L++MR LF++ R++ +P + PK + ++ + + + Sbjct: 68 YKATSSARLLSAMRRLFQYLYREKLREDDPTALLSSPKLPQRLPKDLSEAQVDALLNSPN 127 Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 + + E L +GLR S+ + + ++ V L + + Sbjct: 128 VDIPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKERLVPLGEEAV 187 Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289 + + F +N Q+M F K A AG++ S H + Sbjct: 188 YWIENYMEHGRPWLINGQSLDVLFPSNRSQQMTRQTFWHRIKHYAILAGIDSERLSPHVL 247 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKN 335 R AT + GA + G + + YT A +R++L + Sbjct: 248 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKLLHQQ 294 >gi|25028109|ref|NP_738163.1| site-specific tyrosine recombinase XerD [Corynebacterium efficiens YS-314] gi|259507166|ref|ZP_05750066.1| tyrosine recombinase XerD [Corynebacterium efficiens YS-314] gi|34222804|sp|Q7ZAN4|XERD_COREF RecName: Full=Tyrosine recombinase xerD gi|23493393|dbj|BAC18363.1| putative integrase/recombinase [Corynebacterium efficiens YS-314] gi|259165247|gb|EEW49801.1| tyrosine recombinase XerD [Corynebacterium efficiens YS-314] Length = 304 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 44/286 (15%), Positives = 91/286 (31%), Gaps = 31/286 (10%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSGVESR 126 ++ L + L+ N+ S+ ++ D +I T + + V Sbjct: 3 VRDLARTWLTHLAVERGLSSNTLSSYRRDIERYCDWLEAARIGDISEIATATVEAYVMDL 62 Query: 127 KH--------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + SSA + L +R L K+A+ + V ++ V P + + Sbjct: 63 RRGVDGRAPLSASSAGRALIVVRGLHKFALAEGLVGVDVAADVSPPSTGRHLPDTLSVPE 122 Query: 179 -------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 + + R E L +G R S++ V + + ++ G+ Sbjct: 123 VETLIDAIPTSDIATPVDIRDRALLEVLYGTGARISEAVGLMVDDVTHTPEVLRITGKGS 182 Query: 232 IITVELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAG 281 + + + + F+N ++ K A +AG Sbjct: 183 KQRMVPYGSMARAAVDDYLVRARPALSKGRTPVLFLNQRGGPLSRQSAWAALKKAAGRAG 242 Query: 282 V--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 + + S H +R AT + GA + G +V + YT Sbjct: 243 IAKDISPHTLRHSFATHLLEGGADVRVVQELLGHSSVTTTQIYTHV 288 >gi|228922841|ref|ZP_04086139.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228836896|gb|EEM82239.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 296 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 40/269 (14%), Positives = 99/269 (36%), Gaps = 24/269 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRK---HTPSSAIQFL 137 LA N+ +S+E I+ + + ++T HI + ++ K + + + + Sbjct: 16 KGLAKNTVVSYERDLKSYIKYLQNVEQTKTFHEVTRLHIVNFLQYLKENGKSSKTLARHI 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193 S+R ++ +R+ V +P + +E P+ + + + + ++++ G + + Sbjct: 76 ASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSVDEVEALLQTPKMTSAFGIRDK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252 E L +GLR S+ ++ + + ++ + L + + Sbjct: 136 AMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNKERIIPLGSLATEAIQKYIEKG 195 Query: 253 ETFFI----------NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 + N+ +++ F K A +A + K + H +R AT + Sbjct: 196 RRELMGKKVVDALFLNHHGNRLSRQGFWKILKRLAKEANIEKELTPHTLRHSFATHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329 GA + G + + YT + Sbjct: 256 GADLRAVQEMLGHADISTTQIYTHVSKTR 284 >gi|88706916|ref|ZP_01104615.1| Tyrosine recombinase xerD [Congregibacter litoralis KT71] gi|88698838|gb|EAQ95958.1| Tyrosine recombinase xerD [Congregibacter litoralis KT71] Length = 302 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 51/285 (17%), Positives = 97/285 (34%), Gaps = 23/285 (8%) Query: 74 LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESR---K 127 L+ Y + L+ N+ ++ R + +I I + + S K Sbjct: 12 LLESYLDAVWMEKGLSENTLAAYRRDLQAFARWALSRQRTATQIERSDIEAYLASLLEKK 71 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 +P SA + L+ +R +++ +R + +P L ++ P+ + ++ D+ Sbjct: 72 SSPRSAARALSCLRGFYRYLLRSGQLDTDPTLGLDSPRLGRPLPKTLSEVDVDALLKAPK 131 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM 242 G + R E L GLR S+ + L N ++ G V + + + Sbjct: 132 LDDPIGFRDRCMLELLYACGLRVSELTGLTLSQLSLNQGVLRIVGKGGKERLVPIGEEAL 191 Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 L F + ++M F K A AG+ K S H +R Sbjct: 192 HWLQRFLRDVRPELLGETSSDVLFPSRRAREMTRQTFWHRIKQHAMTAGIRKPISPHVLR 251 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 AT + GA + G + + YT A + + Sbjct: 252 HAFATHLVNHGADLRVVQLLLGHSDLSTTQIYTHVARQRLQSLHA 296 >gi|229192302|ref|ZP_04319267.1| Tyrosine recombinase xerD [Bacillus cereus ATCC 10876] gi|228591252|gb|EEK49106.1| Tyrosine recombinase xerD [Bacillus cereus ATCC 10876] Length = 296 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 40/269 (14%), Positives = 100/269 (37%), Gaps = 24/269 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRK---HTPSSAIQFL 137 LA N+ +S+E ++ + + ++T HI + ++ K + + + + Sbjct: 16 KGLAKNTVVSYERDLKSYVKYLQNVEQTKTFHEVTRLHIVNFLQYLKENGKSSKTLARHI 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193 S+R ++ +R+ V +P + +E P+ + + + + ++++ G + + Sbjct: 76 ASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSVDEVEALLQTPKMTSAFGIRDK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252 E L +GLR S+ ++ + + ++ + L + + Sbjct: 136 AMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNKERIIPLGSLATEAIQKYIEKG 195 Query: 253 ETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 F+N+ +++ F K A +A + K + H +R AT + Sbjct: 196 RRELIGKKVVDALFLNHHGNRLSRQGFWKILKRLAKEANIEKELTPHTLRHSFATHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329 GA + G + + YT + Sbjct: 256 GADLRAVQEMLGHADISTTQIYTHVSKTR 284 >gi|330936913|gb|EGH41038.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. pisi str. 1704B] Length = 298 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 52/281 (18%), Positives = 106/281 (37%), Gaps = 24/281 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT--TKHIRSGVESR---K 127 LI + + L+ N+R S+ S + + I+ + I + R Sbjct: 8 LIDRFLDALWLEKGLSDNTRDSYRSDLALFNGWLQERNVDLISAGREVILDHLAWRVENA 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 + P S +FL+ +R +++ +R++ ++++P L ++ P+ + ++ D++ + Sbjct: 68 YKPRSTARFLSGVRGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADVEALLAAPD 127 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 G + R E L GLR ++ ++ + ++ V + + + Sbjct: 128 LSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEESI 187 Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290 + G F + +M F K +AT AG+ KS H +R Sbjct: 188 VWVERYLRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGIGKSLSPHTLR 247 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 AT + GA + G + + YT A R RL Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARL 287 >gi|258620859|ref|ZP_05715893.1| Tyrosine recombinase xerD [Vibrio mimicus VM573] gi|258586247|gb|EEW10962.1| Tyrosine recombinase xerD [Vibrio mimicus VM573] Length = 302 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 45/280 (16%), Positives = 103/280 (36%), Gaps = 24/280 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR---K 127 L+ ++ + LA N+ S+ + +++ + I+ ++ Sbjct: 11 LVEQFLDAMWLERGLAENTVASYRNDLSKLLEWMAQHQYQLDFISFSGLQEYQNWLSEQN 70 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + P+S + L+++R LF++ R++ A +P + PK T + T+ ++ S Sbjct: 71 YKPTSKARMLSAIRRLFQYLHREKVRADDPSALLISPKLPTRLPKDLTEAQVEALLSAPD 130 Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM 242 + + + E L +GLR ++ ++++ ++ G V + + + Sbjct: 131 PQTPIELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVIGKGGKERLVPMGENAI 190 Query: 243 KLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289 + + + F ++ Q+M F K A A ++ S H + Sbjct: 191 EWIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAEIDVELLSPHVL 250 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + GA + G + + YT A Sbjct: 251 RHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER 290 >gi|310766537|gb|ADP11487.1| Tyrosine recombinase xerD [Erwinia sp. Ejp617] Length = 297 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 42/281 (14%), Positives = 94/281 (33%), Gaps = 24/281 (8%) Query: 73 WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESR 126 LI ++ + +LA N+ S+ + + + + Sbjct: 5 DLIEQFLDALWIERNLAQNTVDSYRLDLRSLGDWLAHQQLSLLNVEVFNLQEFLAQRLEG 64 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + +S+ + L++MR LF++ R++ +P + PK + ++ +++ Sbjct: 65 GYKATSSARLLSAMRRLFQYLYREKLREDDPSALLSSPKLPQRLPKDLSEAQVERLLQAP 124 Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 + + E L +GLR ++ + + ++ V + + Sbjct: 125 CLEQPIELRDKAMLELLYATGLRVTELVGLTLSDISLRQGVVRVIGKGNKERLVPMGEEA 184 Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 + + + F +N ++M F K AT AG++ S H Sbjct: 185 VHWIEQYIEYGRPWLLNGQTIDVLFPSNRAKQMTRQTFWHRIKHYATLAGIDSDKLSPHV 244 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R AT + GA + G + + YT A Sbjct: 245 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 285 >gi|229550039|ref|ZP_04438764.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis ATCC 29200] gi|255972820|ref|ZP_05423406.1| phage integrase [Enterococcus faecalis T1] gi|257089862|ref|ZP_05584223.1| phage integrase [Enterococcus faecalis CH188] gi|257422642|ref|ZP_05599632.1| phage integrase [Enterococcus faecalis X98] gi|312951470|ref|ZP_07770366.1| tyrosine recombinase XerD [Enterococcus faecalis TX0102] gi|229304845|gb|EEN70841.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis ATCC 29200] gi|255963838|gb|EET96314.1| phage integrase [Enterococcus faecalis T1] gi|256998674|gb|EEU85194.1| phage integrase [Enterococcus faecalis CH188] gi|257164466|gb|EEU94426.1| phage integrase [Enterococcus faecalis X98] gi|310630436|gb|EFQ13719.1| tyrosine recombinase XerD [Enterococcus faecalis TX0102] gi|315152507|gb|EFT96523.1| tyrosine recombinase XerD [Enterococcus faecalis TX0031] gi|315155785|gb|EFT99801.1| tyrosine recombinase XerD [Enterococcus faecalis TX0043] gi|315158048|gb|EFU02065.1| tyrosine recombinase XerD [Enterococcus faecalis TX0312] gi|315577730|gb|EFU89921.1| tyrosine recombinase XerD [Enterococcus faecalis TX0630] gi|327535109|gb|AEA93943.1| tyrosine recombinase XerD [Enterococcus faecalis OG1RF] Length = 296 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 43/287 (14%), Positives = 97/287 (33%), Gaps = 27/287 (9%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRK 127 + L+ Y L+ N+R S+E + + G + ++ I ++S Sbjct: 3 EQLVD-YLHYLQIERGLSNNTRRSYERDLKKYVAFLQEQGLHSWDEVDRYMITEFLQSLH 61 Query: 128 ---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQ 180 +S I+ ++S+R ++ ++ NP ++ PK+ + + ++ ++ Sbjct: 62 EEQQASASVIRMISSLRGFHQFLRQERLSEHNPMQHIDSPKKVQKLPSTLSVDEVTRLIE 121 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------------NNIFSIKTQK 228 + G + R E + +GLR S+ + L + I Sbjct: 122 TPDTSKPLGMRNRAILEVMYATGLRVSELIEIKLGDLHLSIGLLQTIGKGDKERIIPLGD 181 Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286 + L + F+N+ + ++ K +A + K + Sbjct: 182 YAIQWIERYMNEARPQLIKNHPNETHLFVNHHGEPLSRQGIWKNLKQIVREARIEKNITP 241 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 H +R AT + GA + G + + YT + R+ Sbjct: 242 HTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITKQ-RMAD 287 >gi|145295553|ref|YP_001138374.1| site-specific tyrosine recombinase XerD [Corynebacterium glutamicum R] gi|140845473|dbj|BAF54472.1| hypothetical protein [Corynebacterium glutamicum R] Length = 304 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 53/289 (18%), Positives = 93/289 (32%), Gaps = 32/289 (11%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKH- 128 L + L+ N+ ++ ++ G D R ITT H+ S V+ + Sbjct: 6 LAKTWLTHLAVERGLSANTLSNYRRDVERYCDWLEAAGLDDIRDITTAHVESYVKDLRRG 65 Query: 129 -------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED--- 178 + SSA + L R L K+A+ + VA + V P + + Sbjct: 66 IDGQQALSASSAGRALIVARGLHKFALMEGEVAADVAADVSPPAMGRHLPDTLSINEVAL 125 Query: 179 ----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-----QKT 229 + + R E L +G R S++ V + ++ +K Sbjct: 126 LIDAIPHSDIATPVDLRDRALVELLYGTGARISEAIGLAVDDVSEMPEVLRITGKGSKKR 185 Query: 230 GTIITVELPDGFMKLLAMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284 + L F+N ++ K +AG++K Sbjct: 186 IVPFGSMAQQAVREYLIRARPALSKGKSHALFLNQRGGPLSRQSAWAVLKKTVERAGLDK 245 Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330 S H +R AT + GA + G +V + YT AD +R Sbjct: 246 DISPHTLRHSFATHLLEGGADVRVVQELLGHSSVTTTQIYTHITADSLR 294 >gi|123443576|ref|YP_001007549.1| site-specific tyrosine recombinase XerD [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090537|emb|CAL13406.1| integrase/recombinase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 299 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 47/287 (16%), Positives = 101/287 (35%), Gaps = 25/287 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRK 127 LI ++ + +LA N+ S+ + D + + + Sbjct: 8 LIEQFLDALWLERNLAENTLASYRLDLHALSGWLEHHDSDLLRAGSQDLQSFLAERIEGG 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + +S+ + L++MR LF++ R++ +P + PK + ++ ++ + + Sbjct: 68 YKATSSARLLSAMRRLFQYLYREKLREDDPTALLSSPKLPQRLPKDLSEAQVEALLNSPN 127 Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 + + E L +GLR S+ + + ++ V L + + Sbjct: 128 VDIPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKERLVPLGEEAV 187 Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289 + + F +N Q+M F K A AG++ S H + Sbjct: 188 YWIENYMEHGRPWLINGQSLDVLFPSNRSQQMTRQTFWHRIKHYAILAGIDSERLSPHVL 247 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKN 335 R AT + GA + G + + YT A +R++L + Sbjct: 248 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKLLHQQ 294 >gi|30022176|ref|NP_833807.1| site-specific tyrosine recombinase XerD [Bacillus cereus ATCC 14579] gi|206971233|ref|ZP_03232184.1| integrase/recombinase XerD [Bacillus cereus AH1134] gi|218235095|ref|YP_002368894.1| site-specific tyrosine recombinase XerD [Bacillus cereus B4264] gi|218899252|ref|YP_002447663.1| integrase/recombinase XerD [Bacillus cereus G9842] gi|228902600|ref|ZP_04066751.1| Tyrosine recombinase xerD [Bacillus thuringiensis IBL 4222] gi|228909920|ref|ZP_04073741.1| Tyrosine recombinase xerD [Bacillus thuringiensis IBL 200] gi|228941242|ref|ZP_04103795.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228954374|ref|ZP_04116400.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228960355|ref|ZP_04122008.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar pakistani str. T13001] gi|228974174|ref|ZP_04134744.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980765|ref|ZP_04141070.1| Tyrosine recombinase xerD [Bacillus thuringiensis Bt407] gi|229047783|ref|ZP_04193363.1| Tyrosine recombinase xerD [Bacillus cereus AH676] gi|229071595|ref|ZP_04204813.1| Tyrosine recombinase xerD [Bacillus cereus F65185] gi|229081347|ref|ZP_04213850.1| Tyrosine recombinase xerD [Bacillus cereus Rock4-2] gi|229111564|ref|ZP_04241115.1| Tyrosine recombinase xerD [Bacillus cereus Rock1-15] gi|229129370|ref|ZP_04258341.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-Cer4] gi|229146665|ref|ZP_04275032.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-ST24] gi|229152292|ref|ZP_04280485.1| Tyrosine recombinase xerD [Bacillus cereus m1550] gi|229180370|ref|ZP_04307713.1| Tyrosine recombinase xerD [Bacillus cereus 172560W] gi|296504585|ref|YP_003666285.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis BMB171] gi|29897733|gb|AAP11008.1| DNA integration/recombination/invertion protein [Bacillus cereus ATCC 14579] gi|206734005|gb|EDZ51176.1| integrase/recombinase XerD [Bacillus cereus AH1134] gi|218163052|gb|ACK63044.1| integrase/recombinase XerD [Bacillus cereus B4264] gi|218543889|gb|ACK96283.1| integrase/recombinase XerD [Bacillus cereus G9842] gi|228603117|gb|EEK60595.1| Tyrosine recombinase xerD [Bacillus cereus 172560W] gi|228631254|gb|EEK87890.1| Tyrosine recombinase xerD [Bacillus cereus m1550] gi|228636835|gb|EEK93298.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-ST24] gi|228653975|gb|EEL09842.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-Cer4] gi|228671946|gb|EEL27239.1| Tyrosine recombinase xerD [Bacillus cereus Rock1-15] gi|228701969|gb|EEL54452.1| Tyrosine recombinase xerD [Bacillus cereus Rock4-2] gi|228711531|gb|EEL63488.1| Tyrosine recombinase xerD [Bacillus cereus F65185] gi|228723575|gb|EEL74940.1| Tyrosine recombinase xerD [Bacillus cereus AH676] gi|228778934|gb|EEM27196.1| Tyrosine recombinase xerD [Bacillus thuringiensis Bt407] gi|228785514|gb|EEM33523.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228799379|gb|EEM46343.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar pakistani str. T13001] gi|228805306|gb|EEM51899.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228818401|gb|EEM64473.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228849755|gb|EEM94588.1| Tyrosine recombinase xerD [Bacillus thuringiensis IBL 200] gi|228857041|gb|EEN01550.1| Tyrosine recombinase xerD [Bacillus thuringiensis IBL 4222] gi|296325637|gb|ADH08565.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis BMB171] gi|326941864|gb|AEA17760.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis serovar chinensis CT-43] Length = 296 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 39/269 (14%), Positives = 99/269 (36%), Gaps = 24/269 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRK---HTPSSAIQFL 137 LA N+ +S+E ++ + + ++T HI + ++ K + + + + Sbjct: 16 KGLAKNTVVSYERDLKSYVKYLQNVEQTKTFHEVTRLHIVNFLQYLKENGKSSKTLARHI 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193 S+R ++ +R+ V +P + +E P+ + + + + ++++ G + + Sbjct: 76 ASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSVDEVEALLQTPKMTSAFGIRDK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252 E L +GLR S+ ++ + + ++ + L + + Sbjct: 136 AMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNKERIIPLGSLATEAIQKYIEKG 195 Query: 253 ETFFI----------NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 + N+ +++ F K A +A + K + H +R AT + Sbjct: 196 RRELMGKKVVDALFLNHHGNRLSRQGFWKILKRLAKEANIEKELTPHTLRHSFATHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329 GA + G + + YT + Sbjct: 256 GADLRAVQEMLGHADISTTQIYTHVSKTR 284 >gi|34222990|sp|Q93C64|XERD_LACCA RecName: Full=Tyrosine recombinase xerD gi|15778434|gb|AAL07436.1|AF413208_1 tyrosine recombinase [Lactobacillus casei] Length = 293 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 43/282 (15%), Positives = 100/282 (35%), Gaps = 22/282 (7%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKI--TTKHIRSGVESRKHT- 129 LI+++ LA +++S++ + D I++ ++ + T Sbjct: 4 LIADFIHYLDVERGLARTTQVSYQQDLTTFMAWLSDQKQTTFPEDFGVIQAFLKHQNDTK 63 Query: 130 -PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKS 184 P+S + ++++R +++ +R+ + +P ++ PK+ + + M + + Sbjct: 64 APASVSRMISALRKFYRFLLREGAIKSDPMTKIDTPKKAQHLPATLSGTEIDALMAKPDT 123 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMK 243 G + R FE + +GLR S+ + L + T K V + Sbjct: 124 TKPLGLRDRAIFELMYATGLRVSEVVGLRLDQLHLAMNLLQVTGKGDKERLVPISPQAAD 183 Query: 244 LLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291 + + F+N + KA G+ K + H +R Sbjct: 184 WVNRYLQESRPRLIKHQQPKAVFVNFHGHALTRQVIWKNLKAYIASVGIEKDVTPHTLRH 243 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 AT + GA + G + + YT +++ + + Sbjct: 244 SFATRLLENGADLRVVQELLGHSDISTTQIYTHLSNQHLVAV 285 >gi|126173088|ref|YP_001049237.1| tyrosine recombinase XerD [Shewanella baltica OS155] gi|125996293|gb|ABN60368.1| tyrosine recombinase XerD [Shewanella baltica OS155] Length = 309 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 45/283 (15%), Positives = 90/283 (31%), Gaps = 28/283 (9%) Query: 74 LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRK 127 LI + L+ N+ ++ + R G + + + + Sbjct: 19 LIDVFLDDLWSSKGLSDNTLSAYRTDLRHFDRYQGQQGVTLLAVSQADVRAYLAFRVEQD 78 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +S+ + L+S+R + + V+ + + +P VE PK ++ + + S + Sbjct: 79 FARTSSARLLSSLRRFYTYLVQTKQILADPMALVESPKLTRHLPDSLSESQVDRLLSEPN 138 Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-------------G 230 + + E L +GLR S+ ++ + ++ Sbjct: 139 VEDAVECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVRIVGKGGKERLVPLGELAI 198 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHG 288 T + + +LL F K A +AG+ S H Sbjct: 199 TEVESYMKFARQELLGNKQSDVVFPSKRGQMM--TRQTFWHRIKLYALRAGIETALSPHT 256 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +R AT + GA + G + + YT A R RL Sbjct: 257 LRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVA-RARL 298 >gi|89257003|ref|YP_514365.1| integrase/recombinase [Francisella tularensis subsp. holarctica LVS] gi|115315363|ref|YP_764086.1| site specific recombinase XerD [Francisella tularensis subsp. holarctica OSU18] gi|156503203|ref|YP_001429268.1| tyrosine recombinase XerD/ phage integrase family protein [Francisella tularensis subsp. holarctica FTNF002-00] gi|167009383|ref|ZP_02274314.1| tyrosine recombinase XerD [Francisella tularensis subsp. holarctica FSC200] gi|254368256|ref|ZP_04984276.1| integrase/recombinase [Francisella tularensis subsp. holarctica 257] gi|254369853|ref|ZP_04985863.1| integrase/recombinase [Francisella tularensis subsp. holarctica FSC022] gi|290954477|ref|ZP_06559098.1| integrase/recombinase [Francisella tularensis subsp. holarctica URFT1] gi|295312082|ref|ZP_06802895.1| integrase/recombinase [Francisella tularensis subsp. holarctica URFT1] gi|89144834|emb|CAJ80173.1| Integrase/recombinase [Francisella tularensis subsp. holarctica LVS] gi|115130262|gb|ABI83449.1| site specific recombinase XerD [Francisella tularensis subsp. holarctica OSU18] gi|134254066|gb|EBA53160.1| integrase/recombinase [Francisella tularensis subsp. holarctica 257] gi|156253806|gb|ABU62312.1| tyrosine recombinase XerD/ phage integrase family protein [Francisella tularensis subsp. holarctica FTNF002-00] gi|157122812|gb|EDO66941.1| integrase/recombinase [Francisella tularensis subsp. holarctica FSC022] Length = 292 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 43/280 (15%), Positives = 96/280 (34%), Gaps = 25/280 (8%) Query: 71 LKWLIS-EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--- 126 + + + + L+ N+ S+ + + D + + + + + R Sbjct: 5 VDAFLDNLWLEH----GLSQNTISSYRTDLKFLQNYFAKTDLISLDFEQLYAFISYRSKN 60 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 ++ S + ++++R + W + NP + PK + + T+ D+++ Sbjct: 61 GYSSHSNARMISTLRKFYAWLISTGQTNNNPTAKLTLPKLAKKLPKDMTETDVERLLQAP 120 Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGF 241 G + + E + +GLR S+ + + NI K V + + Sbjct: 121 DMTEDVGIRDKAMLELMYATGLRVSELVGLNIDDININIGVIQVMGKGSKERIVPIGEYA 180 Query: 242 MKLLAMTP----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289 ++ L ++ FI+ +++ F K A AG+ + S H + Sbjct: 181 LEYLQKYFAEARTSLSKNFKEKAVFISKHAKRITRQSFWHRIKNYALIAGINTDISPHTL 240 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + GA + G V YT + Sbjct: 241 RHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNR 280 >gi|257887731|ref|ZP_05667384.1| phage integrase [Enterococcus faecium 1,141,733] gi|257896226|ref|ZP_05675879.1| phage integrase [Enterococcus faecium Com12] gi|293379533|ref|ZP_06625675.1| tyrosine recombinase XerD [Enterococcus faecium PC4.1] gi|257823785|gb|EEV50717.1| phage integrase [Enterococcus faecium 1,141,733] gi|257832791|gb|EEV59212.1| phage integrase [Enterococcus faecium Com12] gi|292641842|gb|EFF60010.1| tyrosine recombinase XerD [Enterococcus faecium PC4.1] Length = 295 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 42/279 (15%), Positives = 98/279 (35%), Gaps = 24/279 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR---KITTKHIRSGVESR---K 127 I++Y + L+ N+R S+E +Q + + + + +E K Sbjct: 5 INDYLHYLNIERGLSANTRQSYERDLEQYLHFLEEQKVASWQDVDRFLVIRFLEKLHEEK 64 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 ++ + ++S+R ++ ++ +P ++ PK+ + T ++++ Sbjct: 65 KATATVTRMISSLRRFHQFLRQERVTDHDPMQHIDTPKKAQKLPSTLTLAEVEKLIEAPD 124 Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFM 242 G + R E + +G+R S+ + L ++ K + L D + Sbjct: 125 TTKTLGIRDRAILEVMYATGMRVSELIGLKLGDLHLSLGLVQTVGKGDKERIIPLGDYAI 184 Query: 243 KLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290 + L + F+NN + ++ K +AG+ + H +R Sbjct: 185 QWLERYLDEARPLLVKDASEMHVFVNNHGKGLSRQGIWKNLKQLVREAGIYKEVTPHTLR 244 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + GA + G + + YT + Sbjct: 245 HSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKR 283 >gi|220929173|ref|YP_002506082.1| tyrosine recombinase XerD [Clostridium cellulolyticum H10] gi|219999501|gb|ACL76102.1| tyrosine recombinase XerD [Clostridium cellulolyticum H10] Length = 294 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 43/278 (15%), Positives = 102/278 (36%), Gaps = 23/278 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKI------TTKHIRSGVESRK 127 + ++ L++N+ S++ +Q I + + I T ++ + Sbjct: 5 VEKFINFLERDKRLSLNTLQSYKRDIEQYITYLKEINVTNIVNTNKTTVIAYLLHLQKKG 64 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFK 183 S+ + L S+R +++ + + + +P +E PK + + + + +++ Q K Sbjct: 65 RATSTISRNLASIRSFYQFLYKDKVIDNDPTSELESPKVEKKLPQILSTQEVELLLDQPK 124 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 +G + + E L +G+R S+ + + ++ IK K T+ + Sbjct: 125 CLDLKGIRDKAMLELLYATGIRVSELISLNLDDINFDLGLIKCNKGTRERTIPIGSISTA 184 Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291 + F F+N + +++ F K +A +NK + H +R Sbjct: 185 AVHEYLEKSRNFLIQDSQEIALFVNVNGKRLTRQGFWKIIKHYKNQAKINKDITPHTLRH 244 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 A + GA + G + + Y + A Sbjct: 245 SFAAHLLENGADLRSIQEMLGHSDISSTQIYAQIAKNK 282 >gi|157829635|pdb|1A0P|A Chain A, Site-Specific Recombinase, Xerd Length = 290 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 42/279 (15%), Positives = 94/279 (33%), Gaps = 24/279 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRKH 128 I ++ + +LA N+ ++ ++ T + + + + Sbjct: 6 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 65 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +S+ + L+++R LF++ R+++ +P + PK + ++ +++ Sbjct: 66 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 125 Query: 189 G----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243 + + E L +GLR S+ + + ++ V L + + Sbjct: 126 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 185 Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290 L + F + Q+M F K A AG++ S H +R Sbjct: 186 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 245 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + GA + G + + YT A Sbjct: 246 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 284 >gi|73748515|ref|YP_307754.1| tyrosine recombinase XerC [Dehalococcoides sp. CBDB1] gi|147669296|ref|YP_001214114.1| tyrosine recombinase XerC subunit [Dehalococcoides sp. BAV1] gi|289432563|ref|YP_003462436.1| tyrosine recombinase XerC [Dehalococcoides sp. GT] gi|73660231|emb|CAI82838.1| tyrosine recombinase XerC [Dehalococcoides sp. CBDB1] gi|146270244|gb|ABQ17236.1| tyrosine recombinase XerC subunit [Dehalococcoides sp. BAV1] gi|288946283|gb|ADC73980.1| tyrosine recombinase XerC [Dehalococcoides sp. GT] Length = 307 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 39/281 (13%), Positives = 92/281 (32%), Gaps = 25/281 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGVESRKHTP 130 ++Y + +++ + ++ + + + ++ +R + S Sbjct: 5 FNKYLEYLSVEKNVSPYTLRNYRTDLIGFVNYLIEKKVSSFDRVDRYILRDYMSSLIAKG 64 Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 S + L+++R +++ +R+ + NP L+ P+ T ++ + Sbjct: 65 IVKGSIARKLSAVRSFYRYLMREGLIQKNPTLNASSPRLDKRLPEFLTVTEVNKLLRVPD 124 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 +G + + E L SGLR S+ + ++++ + I+ V + Sbjct: 125 SSTPQGLRDKAFMELLYASGLRVSELVKLDIENMDLHSHQIRVWGKGSKERVVLAGLPAI 184 Query: 243 KLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAGVNKS--AHGVR 290 + + +A F A +AG+ K H +R Sbjct: 185 QSIQNYLNLGRPLLKGKRNTPALFLNPTGGRLSARSFQERLDKLAKQAGIEKHVHPHMLR 244 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330 AT D GA + G + + YT + R Sbjct: 245 HTFATHLLDGGADLRVVQELLGHSNLSTTQIYTHVTKSQAR 285 >gi|332160506|ref|YP_004297083.1| site-specific tyrosine recombinase XerD [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318607025|emb|CBY28523.1| tyrosine recombinase XerD [Yersinia enterocolitica subsp. palearctica Y11] gi|325664736|gb|ADZ41380.1| site-specific tyrosine recombinase XerD [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330863449|emb|CBX73568.1| tyrosine recombinase xerD [Yersinia enterocolitica W22703] Length = 299 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 47/287 (16%), Positives = 100/287 (34%), Gaps = 25/287 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRK 127 LI ++ + +LA N+ S+ + D + + + Sbjct: 8 LIEQFLDALWLERNLAENTLASYRLDLHALSGWLEHHDSDLLRAGSQDLQSFLAERIEGG 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + +S+ + L++MR LF++ R++ +P + PK + ++ + + + Sbjct: 68 YKSTSSARLLSAMRRLFQYLYREKLREDDPTALLSSPKLPQRLPKDLSEAQVDALLNSPN 127 Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 + + E L +GLR S+ + + ++ V L + + Sbjct: 128 VDIPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKERLVPLGEEAV 187 Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289 + + F +N Q+M F K A AG++ S H + Sbjct: 188 YWIENYMEYGRPWLINGQSLDVLFPSNRSQQMTRQTFWHRIKHYAILAGIDSERLSPHVL 247 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKN 335 R AT + GA + G + + YT A +R++L + Sbjct: 248 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKLLHQQ 294 >gi|160891605|ref|ZP_02072608.1| hypothetical protein BACUNI_04058 [Bacteroides uniformis ATCC 8492] gi|317478317|ref|ZP_07937481.1| tyrosine recombinase XerD [Bacteroides sp. 4_1_36] gi|156859012|gb|EDO52443.1| hypothetical protein BACUNI_04058 [Bacteroides uniformis ATCC 8492] gi|316905476|gb|EFV27266.1| tyrosine recombinase XerD [Bacteroides sp. 4_1_36] Length = 317 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 60/313 (19%), Positives = 113/313 (36%), Gaps = 27/313 (8%) Query: 58 REYINSPRKKPTTLKWLISEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGDFDYRKITT 116 + S K+ TL +I +Y + L+ N+ ++++ +++ + T Sbjct: 2 KSEEKSTNKEKQTL--IIRKYHQYLKLEKALSPNTVDAYQTDLQKLLHFLEGEGIAILDT 59 Query: 117 -----KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 +H SG+ P S + L+ ++ F + V +Y+ +P +E PK + Sbjct: 60 TLDDLQHFASGLHDIGIHPRSQARILSGIKSFFHFLVMADYLEGDPSELLEGPKIGFKLP 119 Query: 172 RPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKT 226 T E++ + S G+ + R E L GLR S+ C + L + F Sbjct: 120 EVLTVEEIDRIISAIDLGTNEGQRNRAILETLYSCGLRVSELCNLKISDLYFDEGFIKVE 179 Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFIN-----------NDKQKMNATQFSIWFKA 275 K V + +K + + + + + ++ K Sbjct: 180 GKGSKQRLVPISSRAIKEIRNWFVDRNGGWKIKKDFEDYVFLARWGKNISRIMVFHLIKE 239 Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 A KAG+ K S H R AT + GA + + G +++ E YT DR RL Sbjct: 240 LAKKAGITKNISPHTFRHSFATHLLEGGANLRAIQSMLGHESIATTEIYTH-IDRHRLRS 298 Query: 334 KNSRRISSVVDSD 346 + + Sbjct: 299 EIIEHHPRNIKYR 311 >gi|238759282|ref|ZP_04620448.1| Tyrosine recombinase xerD [Yersinia aldovae ATCC 35236] gi|238702443|gb|EEP94994.1| Tyrosine recombinase xerD [Yersinia aldovae ATCC 35236] Length = 299 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 48/281 (17%), Positives = 100/281 (35%), Gaps = 26/281 (9%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESR--- 126 LI ++ + +LA N+ S+ + + G R + + ++S + R Sbjct: 8 LIEQFLDALWLERNLAENTLASYRLDLHALTGWLECHGSDLLRAV-PQDLQSFLAERIEG 66 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + +S+ + L++MR LF++ R++ +P + PK + ++ + + Sbjct: 67 GYKATSSARLLSAMRRLFQYLYREKLREDDPTALLSSPKLPQRLPKDLSEAQVDALLNSP 126 Query: 187 SEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 + + + E L +GLR S+ + + ++ V L + Sbjct: 127 NVDIPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKERLVPLGEEA 186 Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 + + + F +N Q+M F K A AG++ S H Sbjct: 187 VYWIENYMEHGRPWLINGQSLDVLFPSNRSQQMTRQTFWHRIKHYAILAGIDSERLSPHV 246 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R AT + GA + G + + YT A Sbjct: 247 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 287 >gi|145631442|ref|ZP_01787212.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae R3021] gi|144982979|gb|EDJ90488.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae R3021] Length = 297 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 42/281 (14%), Positives = 91/281 (32%), Gaps = 24/281 (8%) Query: 73 WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESR 126 LI + L+ N+ S+ + D + + + Sbjct: 5 ALIDLFLNEYWIEKGLSENTVQSYRLDLTALCDWLDKNDLSLETLDAVDLQGFLGERLEK 64 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + +S + L++MR LF++ R++Y +P + PK + + T++ + + Sbjct: 65 GYKATSTARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQVSDLLNTP 124 Query: 187 SEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 + + E L +GLR ++ ++++ ++ V + + Sbjct: 125 DVDVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKGNKERIVPMGEEA 184 Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 + + F + Q+M F K A A ++ S H Sbjct: 185 AYWVRQFMLYGRPVLLNGQSSDVVFPSQRAQQMTRQTFWHRVKHYAILADIDADALSPHV 244 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R AT + GA + G + + YT A Sbjct: 245 LRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKER 285 >gi|253687046|ref|YP_003016236.1| tyrosine recombinase XerD [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251753624|gb|ACT11700.1| tyrosine recombinase XerD [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 299 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 43/281 (15%), Positives = 94/281 (33%), Gaps = 24/281 (8%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVESR 126 LI ++ + +LA N+ S+ + D + + + + Sbjct: 7 ALIEQFLDALWLERNLAENTLASYRLDLRTLAEWLAHHDNDLLQAQALDLQAFLADRVDG 66 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 + +S+ + L++MR F++ R++ + +P + PK + ++ + + Sbjct: 67 GYKATSSARLLSAMRRFFQYLYREKLRSDDPSAVLSSPKLPQRLPKDLSEAQVDALLNAP 126 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241 + + E L +GLR S+ + + ++ K V L + Sbjct: 127 SIEQPLELRDKAMLEVLYATGLRVSELVGLTMSDVSLRQGVVRVLGKGNKERLVPLGEEA 186 Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 + + + F +N ++M F K A A ++ S H Sbjct: 187 VYWIEYYLEHGRPWLLNGQTLDVLFPSNRARQMTRQTFWHRIKYYAVLASIDSEKLSPHV 246 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R AT + GA + G + + YT A Sbjct: 247 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 287 >gi|145640252|ref|ZP_01795836.1| tyrosine recombinase [Haemophilus influenzae R3021] gi|145274838|gb|EDK14700.1| tyrosine recombinase [Haemophilus influenzae 22.4-21] Length = 297 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 42/281 (14%), Positives = 91/281 (32%), Gaps = 24/281 (8%) Query: 73 WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESR 126 LI + L+ N+ S+ + D + + + Sbjct: 5 ALIDLFLNEYWIEKGLSENTVQSYRLDLTALCDWLDKNDLSLETLDSVDLQGFLGERLEK 64 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + +S + L++MR LF++ R++Y +P + PK + + T++ + + Sbjct: 65 GYKATSTARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQVSDLLNTP 124 Query: 187 ----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 + + E L +GLR ++ ++++ ++ V + + Sbjct: 125 DVEVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKGNKERIVPMGEEA 184 Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 + + F + Q+M F K A A ++ S H Sbjct: 185 AYWVRQFMLYGRPVLLNGQSSDVVFPSQRTQQMTRQTFWHRVKHYAILADIDADALSPHV 244 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R AT + GA + G + + YT A Sbjct: 245 LRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKER 285 >gi|332139609|ref|YP_004425347.1| tyrosine recombinase [Alteromonas macleodii str. 'Deep ecotype'] gi|327549631|gb|AEA96349.1| tyrosine recombinase [Alteromonas macleodii str. 'Deep ecotype'] Length = 306 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 42/282 (14%), Positives = 98/282 (34%), Gaps = 23/282 (8%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---H 128 + ++ L++++ +++ ++ + G +++ +T I+ + K H Sbjct: 13 QWLDKFLLHLQVERGLSLHTIKNYKRQLTEVAKLLGLYEWSGLTPSDIKRVMADAKMSGH 72 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +P S L+++R ++ + + + NP ++ PK+ + + ++MQQ + + Sbjct: 73 SPRSIALRLSALRTFCQYLIEHQQLFSNPVEGIQAPKQGKPLPKQLSVDEMQQLLNASPQ 132 Query: 189 GS--------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 S + FE L GLR S+ + + K + L Sbjct: 133 SSDEDEGMQLRDVAMFELLYGCGLRLSELTGLNLADCLKDGTVKVMGKGSKQRILPLGRH 192 Query: 241 FMKLLAMTPIGKETFFINN--------DKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290 K L + + K +++ Q + A + + S H +R Sbjct: 193 AQKALNAWLKVRPAYASPYESAVFVSKRKTRISNRQVANRLDKMAKEHSLSQKVSPHKLR 252 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 AT ++ + G + + YT D L Sbjct: 253 HSFATHVLESSGDLRAVQELLGHANLSTTQVYTH-LDFQHLA 293 >gi|257898863|ref|ZP_05678516.1| phage integrase [Enterococcus faecium Com15] gi|293570233|ref|ZP_06681302.1| tyrosine recombinase XerD [Enterococcus faecium E980] gi|257836775|gb|EEV61849.1| phage integrase [Enterococcus faecium Com15] gi|291609640|gb|EFF38901.1| tyrosine recombinase XerD [Enterococcus faecium E980] Length = 295 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 42/279 (15%), Positives = 98/279 (35%), Gaps = 24/279 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR---KITTKHIRSGVESR---K 127 I++Y + L+ N+R S+E +Q + + + + +E K Sbjct: 5 INDYLHYLNIERGLSANTRQSYERDLEQYLHFLEEQKVASWQDVDRFLVIRFLEKMHEEK 64 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 ++ + ++S+R ++ ++ +P ++ PK+ + T ++++ Sbjct: 65 KATATVTRMISSLRRFHQFLRQERITDHDPMQHIDTPKKAQKLPSTLTLAEVEKLIEAPD 124 Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFM 242 G + R E + +G+R S+ + L ++ K + L D + Sbjct: 125 TTKTLGIRDRAILEVMYATGMRVSELIGLKLGDLHLSLGLVQTVGKGDKERIIPLGDYAI 184 Query: 243 KLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290 + L + F+NN + ++ K +AG+ + H +R Sbjct: 185 QWLERYLDEARPLLVKDASEMHVFVNNHGKGLSRQGIWKNLKQLVREAGIYKEVTPHTLR 244 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + GA + G + + YT + Sbjct: 245 HSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKR 283 >gi|300767490|ref|ZP_07077402.1| tyrosine recombinase XerD [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300495309|gb|EFK30465.1| tyrosine recombinase XerD [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 305 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 43/283 (15%), Positives = 94/283 (33%), Gaps = 26/283 (9%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRKHTP 130 +++Y L N+ S+ + + + ++ Sbjct: 14 LADYLHFLRVERGLVENTIKSYSQDLTTFSEYLMSQQITDYRVVDRYVLLNYLQYLDEAG 73 Query: 131 SSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S + +S+R F++ + + +P L ++ PKR + + ++++ + Sbjct: 74 KSRNTIIHSVSSLRKFFQYLAQMHAIDTDPMLKIDTPKRAQHLPQVLSPREVERLLAVPK 133 Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFM 242 + + R E + +GLR S++ + L ++ K + + D + Sbjct: 134 LNTPLGLRDRTLLEVMYATGLRVSETINLTMDDLHLDLGLIQTIGKGDKERIIPIGDVAI 193 Query: 243 KLLAMT-----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 + FINN K++ KA+ AG+ K + H + Sbjct: 194 DFITRYLKTARPKLVSAKRRNSYLFINNHGGKLSRQGVWKNLKAEVKAAGIEKNVTPHTL 253 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 R AT + GA + G + + YT + RL Sbjct: 254 RHSFATHILENGADLRVVQELLGHADISTTQIYTH-ISKKRLA 295 >gi|134298963|ref|YP_001112459.1| tyrosine recombinase XerD [Desulfotomaculum reducens MI-1] gi|134051663|gb|ABO49634.1| tyrosine recombinase XerD subunit [Desulfotomaculum reducens MI-1] Length = 296 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 45/278 (16%), Positives = 98/278 (35%), Gaps = 25/278 (8%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESR- 126 + + E+ LA N+ S+ Q + +T HI S + Sbjct: 2 ERWLDEFIHYLAVERGLAQNTLASYRIDLSQYLDHLKKQGVSSLTQADRNHILSHLYKLQ 61 Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 P++ + L +++ +++ V V+ + +S+E PK K + E+++ Sbjct: 62 KDGKAPATISRHLAALKHFYRFLVSDGAVSEDYTVSLESPKLKQRLPHVLSTEEVENLLC 121 Query: 185 FWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPD 239 G + + E + +G+R S+ + ++ ++ IK G + L Sbjct: 122 QPQLSDPAGLRDKAMLELIYATGIRVSEMVSLNLPDVELDMGYIKCFGKGAKERIIPLGS 181 Query: 240 GFMKLLAMT-----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286 ++ + + F+N +++ F K A + +NK + Sbjct: 182 VAIRYIREYLERSRVKLTKGKTEHQALFVNVQGKRLTRQGFWKIIKKYAKEGRINKPITP 241 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT + GA + G + + YT Sbjct: 242 HTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTH 279 >gi|169350427|ref|ZP_02867365.1| hypothetical protein CLOSPI_01195 [Clostridium spiroforme DSM 1552] gi|169292747|gb|EDS74880.1| hypothetical protein CLOSPI_01195 [Clostridium spiroforme DSM 1552] Length = 298 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 52/281 (18%), Positives = 92/281 (32%), Gaps = 25/281 (8%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126 L LI+EY + + + N+ S+ G DY + +R + Sbjct: 3 LDKLINEYLDCLKYERNYSNNTIASYRREIMHFKVYLVQEGISDYNDVDYLMLRGYLTKL 62 Query: 127 KHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-- 181 SS L+++R F + +++E++ NP +E K +E+M Sbjct: 63 YDKNLAKSSINHRLSALRSFFDYLLKEEFIKDNPFKLIESQKVGQRNPDFLFQEEMIDLL 122 Query: 182 --FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238 ++ G + + E + SGLRCS+ + + N + K G V Sbjct: 123 DSIETKDDLGIRNKAMLELMYASGLRCSEVANLQISDIDFNQMVVLVHGKGGKDRYVPFH 182 Query: 239 DGFMKLL-----------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKS 285 + L + G F+N + K A Sbjct: 183 EYARDWLVKYIDEARNNLMIKNAGHNFIFVNKLGNPLTNRGIENIVDRVTFKYDATKKIH 242 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 H +R AT +AGA + G K + + YT + Sbjct: 243 PHTIRHSFATHLLNAGADIRTVQELLGHKNLATTQVYTHIS 283 >gi|288555956|ref|YP_003427891.1| integrase/recombinase [Bacillus pseudofirmus OF4] gi|288547116|gb|ADC50999.1| integrase/recombinase [Bacillus pseudofirmus OF4] Length = 295 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 40/268 (14%), Positives = 89/268 (33%), Gaps = 23/268 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVESRKHTPS---SAIQFL 137 LA N+ S+ + + ++ +T I + K + + + Sbjct: 16 RGLAENTIQSYRRDLLNYAKFLQNVIDIQTFKDVTRHMIVDYLFFLKEQGRAEATIARTI 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRL 194 S+R ++ +R++ +P + ++ PK + + E+++ + + R Sbjct: 76 ASIRAFHQFLLREKLSEQDPSVHLDIPKASKRLPKVLSLEEVEALLTISGQDHLSIRNRA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT----- 248 E L +G+R S+ + ++ ++ + L K L + Sbjct: 136 MMETLYATGMRVSELINLKLTDTHLSMGFVRCIGKGNKERIIPLGQQATKALQLYLEQAR 195 Query: 249 -----PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301 E F+N+ + + F K A A + K + H +R AT + G Sbjct: 196 STMLKKNRHEYVFVNHYGRPLTRQGFWKIVKKLAEAAKIEKELTPHTLRHSFATHLLENG 255 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRI 329 A + G + + YT Sbjct: 256 ADLRAVQEMLGHVDISTTQIYTHVTKTR 283 >gi|307129430|ref|YP_003881446.1| site-specific tyrosine recombinase [Dickeya dadantii 3937] gi|306526959|gb|ADM96889.1| site-specific tyrosine recombinase [Dickeya dadantii 3937] Length = 299 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 48/280 (17%), Positives = 97/280 (34%), Gaps = 24/280 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESR---K 127 LI ++ + +LA N+ S+ + + D + ++ + R Sbjct: 8 LIEQFLDALWLERNLAENTLSSYRNDLRSLADWLAHHDSSLLQAQPSDLQDFLAERLEGG 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185 + +S+ + L++MR LF++ R++ +P + PK + T+ ++ + Sbjct: 68 YKATSSARLLSAMRRLFQYLYREKQRPDDPSAPLSSPKLPQRLPKDLTEAQVEALLAAPV 127 Query: 186 --WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 + + E L +GLR S+ + + ++ V L + + Sbjct: 128 TDQPIELRDKAMLELLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKERLVPLGEEAV 187 Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289 L + F +N Q+M F K AT A ++ S H + Sbjct: 188 YWLEQYLEYSRPWLLNGQTLDVLFPSNRAQQMTRQTFWHRIKHYATLASIDSNKLSPHVL 247 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + GA + G + + YT A Sbjct: 248 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 287 >gi|330807709|ref|YP_004352171.1| Site-specific tyrosine recombinase XerD [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375817|gb|AEA67167.1| Site-specific tyrosine recombinase XerD [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 298 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 51/291 (17%), Positives = 106/291 (36%), Gaps = 24/291 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRK 127 LI ++ + L+ N+R ++ S + I + + Sbjct: 8 LIDQFLDALWLEKGLSDNTRDAYRSDLALFNGWLQENHLELINAGRELILDHLAWRLEQN 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + P S +FL+ +R +++ +R++ +A++P L VE P+ + ++ D++ + Sbjct: 68 YKPRSTARFLSGLRGFYRYLLREKLIAVDPTLRVEMPQLGRPLPKSLSEADVEALLAAPD 127 Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 G + R E L GLR ++ ++ + ++ V + + + Sbjct: 128 LSEAIGQRDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEEAI 187 Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290 + F + ++M F K +A AG+NKS H +R Sbjct: 188 VWVERYMRDARHELLGGRPSDVLFPSLRGEQMTRQTFWHRIKHQAKVAGINKSLSPHTLR 247 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 AT + GA + G + + YT A R RL +++ Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQDLHAKHHPR 297 >gi|254284183|ref|ZP_04959151.1| tyrosine recombinase XerD [gamma proteobacterium NOR51-B] gi|219680386|gb|EED36735.1| tyrosine recombinase XerD [gamma proteobacterium NOR51-B] Length = 299 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 45/281 (16%), Positives = 99/281 (35%), Gaps = 25/281 (8%) Query: 75 ISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH------IRSGVESRK 127 I ++ + L+ N+ ++ Q + + + Sbjct: 9 IDQFIDALWIERGLSANTLAAYRRDLRQFADFLDERGIASLKAADAGALQGFLASRLKSG 68 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 H+ SA +FL+++R +++ +R+ + +P ++ P+ + ++ D+++ + + Sbjct: 69 HSNRSAARFLSTLRGFYRYHLRENRIDRDPTQFIDSPRLGRSLPKSISEADVERLLAAPN 128 Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 + R E L GLR ++ V L N ++ + + + + Sbjct: 129 VEDPIDFRDRTMLELLYACGLRVTELTGLQVSQLSLNQGVVRVVGKGDKERLIPIGEEAL 188 Query: 243 KLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290 + E F +N +M F K A +AG+ + S H +R Sbjct: 189 SWVQQFLAGPRQVLLKERMSEVLFPSNRGGQMTRQTFWYRIKLHAKRAGIEAHLSPHTLR 248 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 AT + GA + G + + YT A R R+ Sbjct: 249 HAFATHLINHGADLRVVQMLLGHSDLTTTQIYTHVA-RHRM 288 >gi|313199950|ref|YP_004038608.1| tyrosine recombinase xerc [Methylovorus sp. MP688] gi|312439266|gb|ADQ83372.1| tyrosine recombinase XerC [Methylovorus sp. MP688] Length = 298 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 45/278 (16%), Positives = 92/278 (33%), Gaps = 19/278 (6%) Query: 73 WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT-- 129 + +Y H L+ +R +++ ++ +G+ + +T HIR V + Sbjct: 3 DYLVQYLDHLSHERRLSPLTRENYQRDLKVLLELNGEVPLQNMTGTHIRRHVATLHGRNL 62 Query: 130 -PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 S + L++ R F++ +++ + NPC + PK + + Q S E Sbjct: 63 GGRSIARMLSAWRGFFEFLIQRHGFSANPCQGIRAPKSPKSLPHALSPDQAVQLVSIDDE 122 Query: 189 GS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKL 244 + + E SGLR ++ + L T K V + M Sbjct: 123 DTLAQRDHAMLELFYSSGLRLAELVNLNLDALNLGEGTITVTGKGNKTRIVPVGQHAMNA 182 Query: 245 LAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSA 294 L + I + ++++ + A + G+N H +R A Sbjct: 183 LQAWLAIRSGLPIQDTSALFLSRLGKRLSRRAVQYRLQQWAIRQGINIRVHPHMLRHSFA 242 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 + + + G + + YT D L Sbjct: 243 SHVLQSSGDLRAVQEMLGHANISTTQVYTH-LDFHHLA 279 >gi|227551150|ref|ZP_03981199.1| site-specific DNA tyrosine recombinase [Enterococcus faecium TX1330] gi|227179712|gb|EEI60684.1| site-specific DNA tyrosine recombinase [Enterococcus faecium TX1330] Length = 300 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 42/279 (15%), Positives = 98/279 (35%), Gaps = 24/279 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR---KITTKHIRSGVESR---K 127 I++Y + L+ N+R S+E +Q + + + + +E K Sbjct: 10 INDYLHYLNIERGLSANTRQSYERDLEQYLHFLEEQKVASWQDVDRFLVIRFLEKLHEEK 69 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 ++ + ++S+R ++ ++ +P ++ PK+ + T ++++ Sbjct: 70 KATATVTRMISSLRRFHQFLRQERVTDHDPMQHIDTPKKAQKLPSTLTLAEVEKLIEAPD 129 Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFM 242 G + R E + +G+R S+ + L ++ K + L D + Sbjct: 130 TTKTLGIRDRAILEVMYATGMRVSELIGLKLGDLHLSLGLVQTVGKGDKERIIPLGDYAI 189 Query: 243 KLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290 + L + F+NN + ++ K +AG+ + H +R Sbjct: 190 QWLERYLDEARPLLVKDASEMHVFVNNHGKGLSRQGIWKNLKQLVREAGIYKEVTPHTLR 249 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + GA + G + + YT + Sbjct: 250 HSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKR 288 >gi|301154937|emb|CBW14400.1| site-specific tyrosine recombinase [Haemophilus parainfluenzae T3T1] Length = 297 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 43/280 (15%), Positives = 95/280 (33%), Gaps = 24/280 (8%) Query: 74 LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESR---K 127 L+ + L+ N+ S+ + + + ++ + SR Sbjct: 6 LVDLFLNEYWIEKGLSENTVQSYRLDLTALCDWLDKQNLSLETLEPLDLQQFLGSRLEQG 65 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 + +S + L++MR LF++ R++Y +P + PK + + T++ + + Sbjct: 66 YKATSTARMLSAMRKLFQYLYREKYRTDDPSAVLSSPKLPSRLPKYLTEQQVTDLLNTPD 125 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 + + E L +GLR ++ ++++ ++ V + + Sbjct: 126 VEIPLELRDKAMLELLYATGLRVTELVTLTIENMNLQQGVVRVIGKGNKERIVPMGEEAA 185 Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289 + + F + Q+M F K A AG++ S H + Sbjct: 186 FWVRQFVLYGRPILLNGQSSDVVFPSQRAQQMTRQTFWHRIKHYAILAGIDTDALSPHVL 245 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + GA + G + + YT A Sbjct: 246 RHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKER 285 >gi|49085926|gb|AAT51315.1| PA3738 [synthetic construct] Length = 299 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 56/296 (18%), Positives = 101/296 (34%), Gaps = 25/296 (8%) Query: 70 TLKW-LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVES 125 T + LI + + LA N+R ++ + Q I I + Sbjct: 3 TFEHPLIDRFLDALWLEKGLADNTREAYRNDLQQFNAWLDGRGLRLEGIGRDAILDHLAW 62 Query: 126 R---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 R + S +FL+ +R +++ +R +A +P L V+ P+ + ++ D++ Sbjct: 63 RLEQGYKARSTARFLSGLRGFYRYCLRDGLIAEDPTLQVDLPQLGKPLPKSLSEADVEAL 122 Query: 183 KSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVEL 237 + G + R E L GLR S+ ++ + K V L Sbjct: 123 LAAPEVDDPLGLRDRTMLEVLYACGLRVSELVGLTLEQVNLRQGVVKVFGKGSKERLVPL 182 Query: 238 PDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKA--GVNKS 285 + + L + F + ++M F K A A G + S Sbjct: 183 GEEAIGWLERYLREARGDLLGGRPSDVLFPSLRGEQMTRQTFWHRIKHHAQVAAIGTSIS 242 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 H +R AT + GA + G + + YT A R RL ++R Sbjct: 243 PHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHIA-RARLQDLHARHHPR 297 >gi|28378545|ref|NP_785437.1| integrase/recombinase [Lactobacillus plantarum WCFS1] gi|254556759|ref|YP_003063176.1| integrase/recombinase [Lactobacillus plantarum JDM1] gi|308180702|ref|YP_003924830.1| integrase/recombinase [Lactobacillus plantarum subsp. plantarum ST-III] gi|28271381|emb|CAD64286.1| integrase/recombinase [Lactobacillus plantarum WCFS1] gi|254045686|gb|ACT62479.1| integrase/recombinase [Lactobacillus plantarum JDM1] gi|308046193|gb|ADN98736.1| integrase/recombinase [Lactobacillus plantarum subsp. plantarum ST-III] Length = 296 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 43/283 (15%), Positives = 94/283 (33%), Gaps = 26/283 (9%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRKHTP 130 +++Y L N+ S+ + + + ++ Sbjct: 5 LADYLHFLRVERGLVENTIKSYSQDLTTFSEYLMSQQITDYRVVDRYVLLNYLQYLDEAG 64 Query: 131 SSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S + +S+R F++ + + +P L ++ PKR + + ++++ + Sbjct: 65 KSRNTIIHSVSSLRKFFQYLAQMHAIDTDPMLKIDTPKRAQHLPQVLSPREVERLLAVPK 124 Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFM 242 + + R E + +GLR S++ + L ++ K + + D + Sbjct: 125 LNTPLGLRDRTLLEVMYATGLRVSETINLTMDDLHLDLGLIQTIGKGDKERIIPIGDVAI 184 Query: 243 KLLAMT-----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 + FINN K++ KA+ AG+ K + H + Sbjct: 185 DFITRYLKTARPKLVSAKRRNSYLFINNHGGKLSRQGVWKNLKAEVKAAGIEKNVTPHTL 244 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 R AT + GA + G + + YT + RL Sbjct: 245 RHSFATHILENGADLRVVQELLGHADISTTQIYTH-ISKKRLA 286 >gi|257877980|ref|ZP_05657633.1| phage integrase [Enterococcus faecium 1,230,933] gi|257881234|ref|ZP_05660887.1| phage integrase [Enterococcus faecium 1,231,502] gi|257884899|ref|ZP_05664552.1| phage integrase [Enterococcus faecium 1,231,501] gi|257889821|ref|ZP_05669474.1| phage integrase [Enterococcus faecium 1,231,410] gi|258616535|ref|ZP_05714305.1| integrase/recombinase XerD, putative [Enterococcus faecium DO] gi|260559031|ref|ZP_05831217.1| phage integrase [Enterococcus faecium C68] gi|261207565|ref|ZP_05922250.1| phage integrase [Enterococcus faecium TC 6] gi|289565077|ref|ZP_06445530.1| tyrosine recombinase XerD [Enterococcus faecium D344SRF] gi|293556722|ref|ZP_06675285.1| tyrosine recombinase XerD [Enterococcus faecium E1039] gi|293563380|ref|ZP_06677829.1| tyrosine recombinase XerD [Enterococcus faecium E1162] gi|293568038|ref|ZP_06679376.1| tyrosine recombinase XerD [Enterococcus faecium E1071] gi|294614864|ref|ZP_06694759.1| tyrosine recombinase XerD [Enterococcus faecium E1636] gi|294618694|ref|ZP_06698228.1| tyrosine recombinase XerD [Enterococcus faecium E1679] gi|294622985|ref|ZP_06701875.1| tyrosine recombinase XerD [Enterococcus faecium U0317] gi|257812208|gb|EEV40966.1| phage integrase [Enterococcus faecium 1,230,933] gi|257816892|gb|EEV44220.1| phage integrase [Enterococcus faecium 1,231,502] gi|257820737|gb|EEV47885.1| phage integrase [Enterococcus faecium 1,231,501] gi|257826181|gb|EEV52807.1| phage integrase [Enterococcus faecium 1,231,410] gi|260074788|gb|EEW63104.1| phage integrase [Enterococcus faecium C68] gi|260077948|gb|EEW65654.1| phage integrase [Enterococcus faecium TC 6] gi|289163084|gb|EFD10931.1| tyrosine recombinase XerD [Enterococcus faecium D344SRF] gi|291589259|gb|EFF21069.1| tyrosine recombinase XerD [Enterococcus faecium E1071] gi|291592326|gb|EFF23940.1| tyrosine recombinase XerD [Enterococcus faecium E1636] gi|291595077|gb|EFF26420.1| tyrosine recombinase XerD [Enterococcus faecium E1679] gi|291597613|gb|EFF28774.1| tyrosine recombinase XerD [Enterococcus faecium U0317] gi|291601054|gb|EFF31343.1| tyrosine recombinase XerD [Enterococcus faecium E1039] gi|291604641|gb|EFF34126.1| tyrosine recombinase XerD [Enterococcus faecium E1162] Length = 295 Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 42/279 (15%), Positives = 98/279 (35%), Gaps = 24/279 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR---KITTKHIRSGVESR---K 127 I++Y + L+ N+R S+E +Q + + + + +E K Sbjct: 5 INDYLHYLNIERGLSANTRQSYERDLEQYLHFLQEQKIASWQDVDRFLVIRFLEKLHEEK 64 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 ++ + ++S+R ++ ++ +P ++ PK+ + T ++++ Sbjct: 65 KATATVTRMISSLRRFHQFLRQERITDHDPMQHIDTPKKAQKLPSTLTLTEVEKLIEAPD 124 Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFM 242 G + R E + +G+R S+ + L ++ K + L D + Sbjct: 125 TTKTLGIRDRAILEVMYATGMRVSELIGLKLGDLHLSLGLVQTVGKGDKERIIPLGDYAI 184 Query: 243 KLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290 + L + F+NN + ++ K +AG+ + H +R Sbjct: 185 QWLERYLDEARPLLVKDASEMHVFVNNHGKGLSRQGIWKNLKQLVREAGIYKEVTPHTLR 244 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + GA + G + + YT + Sbjct: 245 HSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKR 283 >gi|257453533|ref|ZP_05618823.1| tyrosine recombinase XerD [Enhydrobacter aerosaccus SK60] gi|257448991|gb|EEV23944.1| tyrosine recombinase XerD [Enhydrobacter aerosaccus SK60] Length = 314 Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 48/278 (17%), Positives = 90/278 (32%), Gaps = 26/278 (9%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 I ++R+ LA N+R ++ + + + + + + + +A Sbjct: 23 YIQQFRQELLTRGLATNTRNAYIRDL-MLCETTCSKAITRWDASDVLACLAALYKQGKTA 81 Query: 134 I---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFW 186 + L+S++ F W + NPC ++ PK + ++ D+ + Sbjct: 82 RSQARALSSLKQFFLWQINANQRDDNPCEHIKTPKLGRALPKDLSESDVDALLASPDTST 141 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLL 245 G + + FE L GLR S+ + + N T K V L + + +L Sbjct: 142 PLGMRDQAMFEVLYACGLRVSELIHLSLSEVNLNAGWLQVTGKGDKTRLVPLGEVAIDVL 201 Query: 246 AMTPIGKETFFINNDKQK---------------MNATQFSIWFKAKATKAGVN--KSAHG 288 + M F K A +AG+ S H Sbjct: 202 TDYLTLARPQLCIMKNGRESRCQAVFLTQQGGYMTRQNFWYVIKRYAKQAGIESEISPHT 261 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 +R AT + GA + G + + YT A Sbjct: 262 LRHAFATHLLNHGADLRSVQMLLGHSDLSTTQIYTHVA 299 >gi|145628659|ref|ZP_01784459.1| tyrosine recombinase [Haemophilus influenzae 22.1-21] gi|144979129|gb|EDJ88815.1| tyrosine recombinase [Haemophilus influenzae 22.1-21] gi|309972530|gb|ADO95731.1| Site-specific, tyrosine recombinase XerD [Haemophilus influenzae R2846] Length = 297 Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 42/281 (14%), Positives = 91/281 (32%), Gaps = 24/281 (8%) Query: 73 WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESR 126 LI + L+ N+ S+ + D + + + Sbjct: 5 ALIDLFLNEYWIEKGLSENTVQSYRLDLTALCDWLDKNDLSLETLDAVDLQGFLGERLEK 64 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + +S + L++MR LF++ R++Y +P + PK + + T++ + + Sbjct: 65 GYKATSTARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQVSDLLNTP 124 Query: 187 ----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 + + E L +GLR ++ ++++ ++ V + + Sbjct: 125 DVEVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKGNKERIVPMGEEA 184 Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 + + F + Q+M F K A A ++ S H Sbjct: 185 AYWVRQFMLYGRPVLLNGQSSDVVFPSQRTQQMTRQTFWHRVKHYAILADIDADALSPHV 244 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R AT + GA + G + + YT A Sbjct: 245 LRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKER 285 >gi|113461426|ref|YP_719495.1| site-specific tyrosine recombinase XerD [Haemophilus somnus 129PT] gi|170718469|ref|YP_001783684.1| site-specific tyrosine recombinase XerD [Haemophilus somnus 2336] gi|112823469|gb|ABI25558.1| tyrosine recombinase XerD subunit [Haemophilus somnus 129PT] gi|168826598|gb|ACA31969.1| tyrosine recombinase XerD [Haemophilus somnus 2336] Length = 297 Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 43/281 (15%), Positives = 96/281 (34%), Gaps = 24/281 (8%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESR--- 126 LI + L+ N+ S+ + + + +++ + R Sbjct: 5 ALIDLFLNELWLEKGLSENTVQSYRLDLTALSQWLEPQGLSLETLDVVDLQTFLGERLTQ 64 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + +S + L+++R LF++ R++Y + +P + PK + + T++ + + Sbjct: 65 GYKATSTARMLSALRKLFQYLYREKYRSDDPSAVLSSPKLPSRLPKYLTEQQVTDLLNTP 124 Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 + + + E L +GLR ++ + + N ++ V + + Sbjct: 125 NTEIPLELRDKAMLEMLYATGLRVTELVSLSLDSININQGVVRVIGKGKKERIVPMGEEA 184 Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 L + +F F + +M F K A A ++ S H Sbjct: 185 NYWLRQFILYGRSFLLAGQSSDVVFPSRRGTQMTRQTFWHRVKYYAILAEIDTSALSPHV 244 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R AT + GA + G + + YT A Sbjct: 245 LRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKER 285 >gi|329894263|ref|ZP_08270149.1| Site-specific recombinase XerD [gamma proteobacterium IMCC3088] gi|328923194|gb|EGG30516.1| Site-specific recombinase XerD [gamma proteobacterium IMCC3088] Length = 298 Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 49/280 (17%), Positives = 96/280 (34%), Gaps = 25/280 (8%) Query: 75 ISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSG---VESR 126 I ++ + L+ NS ++ + R+ ++ + Sbjct: 7 IEQFIDALWMERGLSDNSLSAYRTDLAHYQAWLDKAVAGRQLRQADGADLQRYLGLRLKQ 66 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 +P S + L+ +R +++A+RQ + +P VE PK + +++D+ S Sbjct: 67 GRSPRSTARLLSCLRSFYRYALRQNWCVTDPTADVESPKMGRALPKSLSEQDVDALLSAP 126 Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241 + S + + E L GLR S+ ++ N ++ K V + + Sbjct: 127 NVESPIELRDKAMLELLYACGLRVSELVGLTQLNISVNQGVVRVLGKGSKERLVPMGEEA 186 Query: 242 MKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289 + L + F + Q M F K A +AG+ S H + Sbjct: 187 LDWLTRYLREGRPLIVEKKANDWLFPSIRGQGMTRQTFWHRIKLYAKRAGIKAPLSPHTL 246 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + GA + G + + YT A + Sbjct: 247 RHAFATHLLNHGADLRVVQMLLGHSDLTTTQIYTHVAQQR 286 >gi|16272264|ref|NP_438476.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae Rd KW20] gi|260581222|ref|ZP_05849041.1| tyrosine recombinase XerD [Haemophilus influenzae RdAW] gi|1175025|sp|P44630|XERD_HAEIN RecName: Full=Tyrosine recombinase xerD gi|1573278|gb|AAC21974.1| integrase/recombinase (xerD) [Haemophilus influenzae Rd KW20] gi|260092147|gb|EEW76091.1| tyrosine recombinase XerD [Haemophilus influenzae RdAW] Length = 297 Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 42/281 (14%), Positives = 92/281 (32%), Gaps = 24/281 (8%) Query: 73 WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESR 126 LI + L+ N+ S+ + D + + + Sbjct: 5 ALIDLFLNEYWIEKGLSENTVQSYRLDLTALCDWLDKNDLSLETLDAVDLQGFLGERLEK 64 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + +S + L++MR LF++ R++Y +P + PK + + T++ + + Sbjct: 65 GYKATSTARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQVSDLLNTP 124 Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 + + + E L +GLR ++ ++++ ++ V + + Sbjct: 125 NVEVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKGNKERIVPMGEEA 184 Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 + + F + Q+M F K A A ++ S H Sbjct: 185 AYWVRQFMLYGRPVLLNGQSSDVVFPSQRAQQMTRQTFWHRVKHYAILADIDADALSPHV 244 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R AT + GA + G + + YT A Sbjct: 245 LRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKER 285 >gi|262274923|ref|ZP_06052734.1| site-specific recombinase XerD [Grimontia hollisae CIP 101886] gi|262221486|gb|EEY72800.1| site-specific recombinase XerD [Grimontia hollisae CIP 101886] Length = 298 Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 42/281 (14%), Positives = 96/281 (34%), Gaps = 24/281 (8%) Query: 73 WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESR 126 L+ ++ + L+ N+ S+ + ++ + + + + Sbjct: 6 ALVEQFLDAMWMERGLSENTLASYRNDLTKLCQWLDKDGELLVTVACSKLQEYQHWLFDL 65 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + SS + L++MR LF++ R++ +P ++ PK + ++ ++ Sbjct: 66 NYKQSSRARMLSAMRRLFQYLYREKLREDDPTATLISPKLPKRLPKDLSEAQVEALLDAP 125 Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGF 241 + + + E L +GLR ++ +++ ++ G V + + Sbjct: 126 NVEDVIELRDKAMLELLYATGLRVTELISLTTENVSLRQGVVRVIGKGGKERLVPMGEAA 185 Query: 242 MKLLAMTPIGKET----------FFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 ++ L FF + + M F K A AG++ S H Sbjct: 186 IEWLEHYMAHSRPALLGEQSSDVFFPSRRARMMTRQTFWHRIKFYAALAGIDGEMLSPHV 245 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R AT + GA + G + + YT A Sbjct: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286 >gi|229168834|ref|ZP_04296553.1| Tyrosine recombinase xerD [Bacillus cereus AH621] gi|228614682|gb|EEK71788.1| Tyrosine recombinase xerD [Bacillus cereus AH621] Length = 296 Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 40/271 (14%), Positives = 100/271 (36%), Gaps = 25/271 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRK---HTPSSAIQFL 137 LA N+ +S+E ++ + + ++T HI + ++ K + + + + Sbjct: 16 KGLAKNTVVSYERDLKSYVKYLQNVEQTKTFHEVTRLHIVNFLQHLKENGKSSKTLARHI 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193 S+R ++ +R+ V +P + +E P+ + + + + ++++ G + + Sbjct: 76 ASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSIDEVEALLQTPKTASAFGIRDK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252 E L +GLR S+ ++ + + ++ + L + + Sbjct: 136 AMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNKERIIPLGSLATEAIQKYIEKG 195 Query: 253 ETFFI----------NNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300 + N+ +++ F K A +A + + H +R AT + Sbjct: 196 RRELMGKKAVDALFLNHHGNRLSRQGFWKILKRLAKEANIAKELTPHTLRHSFATHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331 GA + G + + YT + RL Sbjct: 256 GADLRAVQEMLGHADISTTQIYTH-VSKARL 285 >gi|57234468|ref|YP_181457.1| tyrosine recombinase XerC [Dehalococcoides ethenogenes 195] gi|57224916|gb|AAW39973.1| tyrosine recombinase XerC [Dehalococcoides ethenogenes 195] Length = 307 Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 43/281 (15%), Positives = 99/281 (35%), Gaps = 25/281 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGVESRKHTP 130 ++Y + +++ + ++ + + + K+ +R + S Sbjct: 5 FNKYLEYLTVEKNVSAYTLRNYRTDLIGFVNYLIEKKVSSFDKVDRYILRDYMSSLIEKG 64 Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS--- 184 S + L+++R +++ +R+ + NP L+ P+ T ++ + Sbjct: 65 IVKGSIARKLSAVRSFYRYLMREGLIQKNPTLNASSPRLDKRLPEFLTTAEVNKLLRIPD 124 Query: 185 -FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 +G + + E L SGLR S+ + +++L + I+ V + + Sbjct: 125 SSTPQGLRDKAFMELLYASGLRVSELVKLDIENLDLHSHQIRVWGKGSKERIVLMGLPAI 184 Query: 243 KLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290 + + F+N + +++A F A +AG+ K H +R Sbjct: 185 QSIQTYLNLGRPLLKGKRNTPALFLNPNGGRLSARSFQERLDKLAHQAGIEKHVHPHMLR 244 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330 AT D GA + G + + YT + R Sbjct: 245 HTFATHLLDGGADLRVVQELLGHSNLSTTQIYTHVTKSQAR 285 >gi|152979420|ref|YP_001345049.1| site-specific tyrosine recombinase XerD [Actinobacillus succinogenes 130Z] gi|150841143|gb|ABR75114.1| tyrosine recombinase XerD [Actinobacillus succinogenes 130Z] Length = 297 Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 44/282 (15%), Positives = 90/282 (31%), Gaps = 24/282 (8%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVES 125 L+ + L+ N+ S+ + + + Sbjct: 4 SALVELFLNDIWLEKGLSENTIQSYRLDLAALCDWLNAHSLSLISLDAVDLQSFLGQRVE 63 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + +S + L++MR LF++ R+ Y +P ++ PK T + T++ + S Sbjct: 64 AGYKATSTARLLSAMRKLFQYLYRENYRPDDPSATLSSPKLPTRLPKYLTEQQVNDLLSV 123 Query: 186 WSEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHL-----------QNNIFSIKTQKTG 230 S + + E L +GLR ++ + ++ + N I Sbjct: 124 PSTDVPLELRDKAMLELLYATGLRVTELVSLSMDNISLSQGVVRVIGKGNKERIVPMGEE 183 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287 V + + + + + F + +M F K A A ++ S H Sbjct: 184 AAYWVGEFIRYGRAMLLNGQSSDVVFPSRRALQMTRQTFWHRIKYYAVLADIDGDSLSPH 243 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R AT + GA + G + + YT A Sbjct: 244 VLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKER 285 >gi|330895934|gb|EGH28218.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. japonica str. M301072PT] Length = 298 Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 53/291 (18%), Positives = 109/291 (37%), Gaps = 24/291 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT--TKHIRSGVESR---K 127 LI + + L+ N+R S+ S + + I+ + I + R Sbjct: 8 LIDRFLDALWLEKGLSDNTRDSYRSDLALFNGWLQERNVDLISAGREVILDHLAWRVENA 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 + P S +FL+ +R +++ +R++ ++++P L ++ P+ + ++ D++ + Sbjct: 68 YKPRSTARFLSGVRGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADVEALLAAPD 127 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 G + R E L GLR ++ ++ + ++ V + + + Sbjct: 128 LSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEESI 187 Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290 + G F + +M F K +AT AG+ KS H +R Sbjct: 188 VWVERYLRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGIGKSLSPHTLR 247 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 AT + GA + G + + YT A R RL ++R Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQELHARHHPR 297 >gi|254481807|ref|ZP_05095050.1| tyrosine recombinase XerD [marine gamma proteobacterium HTCC2148] gi|214037936|gb|EEB78600.1| tyrosine recombinase XerD [marine gamma proteobacterium HTCC2148] Length = 298 Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 48/279 (17%), Positives = 94/279 (33%), Gaps = 24/279 (8%) Query: 75 ISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKI---TTKHIRSGVESRKHTP 130 I Y + L+ N+ S+ Q + +++ + +R Sbjct: 8 IERYIDAMWMEKGLSDNTLSSYRRDLRQFNDWLAKSKKSSVISTDRAELQAYLGARLQQG 67 Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S +F++ R +K+ +R+ + ++P L V+ PK R ++ D+ + Sbjct: 68 QSQRSTARFMSCARGFYKYLLREGRLTVDPTLDVDSPKLGRPLPRSLSEGDVDKLLDAPD 127 Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 + R E L GLR S+ + + N ++ V + + + Sbjct: 128 LDIALEYRDRTMLEMLYACGLRVSELTGLQINQISINQGVVRVFGKGSKERLVPMGEEAL 187 Query: 243 KLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVR 290 L I + F + ++M F K A +AG+ S H +R Sbjct: 188 AWLQGYLAGPRAELLKGIPSDVVFPSKRGRQMTRQTFWYRIKIYAKRAGIKQNLSPHTLR 247 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + GA + G + + YT A + Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLTTTQIYTHVAKQR 286 >gi|227503694|ref|ZP_03933743.1| site-specific tyrosine recombinase XerD [Corynebacterium accolens ATCC 49725] gi|227075730|gb|EEI13693.1| site-specific tyrosine recombinase XerD [Corynebacterium accolens ATCC 49725] Length = 296 Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 46/282 (16%), Positives = 93/282 (32%), Gaps = 23/282 (8%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSGVESRK 127 + + + ++ N+ ++ + + D R++T + + ++ + Sbjct: 5 EDIAQTWLNHLAVERGVSANTLSNYRRDIRRYVDWLAVNEVQDLRQVTRPMVEAYLKDLR 64 Query: 128 HT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 T SSA + L R L K+AV + + + V P + +++ Q Sbjct: 65 ETMAVSSANRALIVARGLHKFAVAEGEIDSDVAAEVSPPSTGQHLPETLSVDEVTQLIEA 124 Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDG 240 + R E L +G R S+ V + + K V L Sbjct: 125 TPTETPVDLRDRALLEVLYGTGARISEVISLNVDDVATGDDVLVLHGKGDKERLVPLGSH 184 Query: 241 FMKLLAMTPIGKETF---------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289 + + + F+N ++ K A ++ ++KS H + Sbjct: 185 ARQAIDAYLVRARPVLGKGKTAALFLNTRGGALSRQSAWSIIKTAAQRSQLDKSISPHTL 244 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIR 330 R AT + GA + G +V + YT AD +R Sbjct: 245 RHSFATHLLEGGADVRTVQELLGHSSVTTTQIYTHVTADSLR 286 >gi|206890528|ref|YP_002247908.1| tyrosine recombinase XerD [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742466|gb|ACI21523.1| tyrosine recombinase XerD [Thermodesulfovibrio yellowstonii DSM 11347] Length = 294 Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 51/280 (18%), Positives = 108/280 (38%), Gaps = 21/280 (7%) Query: 72 KWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVES 125 K ++ ++ +L++N+ S+E+ ++ + + + K ++ Sbjct: 4 KEILKKFLNYLLTEKALSINTVKSYENDLKNFLKWLTEQNILVLNCKKDDIVQYLLNLKE 63 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + ++ +S + L+S++ F++ + + +P ++ PK + +++++ S Sbjct: 64 KAYSSTSIARILSSLKQFFRFMIFDSIINHDPTEGLKSPKLWLRLPKALEIDEVKRLLSV 123 Query: 186 WSEG---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 E + E + SGLR S+ R + + I+ + V + Sbjct: 124 MLESKYYLRDIAMLELMYASGLRVSELVRLKLSDINFEAGFIRVKGKGDKERVVPIAQRS 183 Query: 242 MKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRK 291 + + E F+NN Q M +F KA AGVN + H +R Sbjct: 184 IDKIKNYLVKLRPVLLKKKASEYVFLNNRGQPMTRQRFWQNIKAIGRIAGVNVTPHMIRH 243 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330 AT + GA L G + + YTK + DR+R Sbjct: 244 SFATHLLEGGADLRSLQKMLGHSDISTTQIYTKVSMDRLR 283 >gi|300775316|ref|ZP_07085178.1| tyrosine recombinase XerD [Chryseobacterium gleum ATCC 35910] gi|300506056|gb|EFK37192.1| tyrosine recombinase XerD [Chryseobacterium gleum ATCC 35910] Length = 304 Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 50/282 (17%), Positives = 95/282 (33%), Gaps = 26/282 (9%) Query: 69 TTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSGV 123 T I ++ + + + N+ ++ ++ + I ++++ + Sbjct: 1 MTWDEKIKDFEIFLRFERNFSENTLDAYVRDIKKLKDYAEEDLENVGPDSIAYENLQEYI 60 Query: 124 ---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 +K + S ++++S++ FK+ + EY NP +E PK + D+ Sbjct: 61 FNLSKQKFSERSQARWISSIKAFFKFLLEDEYREDNPAALLEGPKLGLYLPDTLSLPDIN 120 Query: 181 QFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITV 235 + + + + + E L GLR S+ + ++ + K V Sbjct: 121 KIIAAIEVNTDLGKRNQCIIEVLYGCGLRVSELIDLKISNINFKEQYIKVHGKGNKTRFV 180 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQ-----------KMNATQFSIWFKAKATKAGVNK 284 L D LL + N K M+ + K KAGVNK Sbjct: 181 PLADYTADLLDSYIKEVRSKGKINKKYEDTLFLNSRGTSMSRVIVFLIIKELTDKAGVNK 240 Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 S H R AT GA + G ++ E YT Sbjct: 241 KISPHTFRHSFATHLLQNGADLRYIQEMLGHSSITTTEIYTH 282 >gi|291618684|ref|YP_003521426.1| XerD [Pantoea ananatis LMG 20103] gi|291153714|gb|ADD78298.1| XerD [Pantoea ananatis LMG 20103] Length = 297 Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 49/289 (16%), Positives = 100/289 (34%), Gaps = 25/289 (8%) Query: 72 KWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR-- 126 L ++ + +LA N+ S+ + ++ ++ + R Sbjct: 4 SELTEQFLDALWIERNLAQNTLSSYRQDLQTLTGWLAHHGLTLTTLSAPDLQQFLAERLE 63 Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + SS+ + L++MR LF++ R++ +P + PK + ++ + + Sbjct: 64 GGYKASSSARLLSAMRRLFQYLYREKMRTDDPSAMLAAPKLPQRLPKDLSEAQVDRLLQA 123 Query: 186 WSEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDG 240 + + E L +GLR S+ + + ++ V L + Sbjct: 124 PDVNVPLELRDKAMLELLYATGLRVSELVGLTLNDVSLRQGVVRVIGKGNKERLVPLGEE 183 Query: 241 FMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287 + L + F +N Q+M F K A AG++ S H Sbjct: 184 AVHWLEYYMEHGRPWLLNGQTLDVFFPSNRAQQMTRQTFWHRIKHYAMLAGIDSEKLSPH 243 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKN 335 +R AT + GA + G + + YT A +R+RL + Sbjct: 244 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRLLHQQ 292 >gi|282164156|ref|YP_003356541.1| putative site-specific recombinase [Methanocella paludicola SANAE] gi|282156470|dbj|BAI61558.1| putative site-specific recombinase [Methanocella paludicola SANAE] Length = 272 Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 42/271 (15%), Positives = 85/271 (31%), Gaps = 14/271 (5%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---- 128 I + S + N+ + ++ I + Sbjct: 2 DYIQIFLDEKRLSS-SPNTIKQYGLILHNFQEFC-SKPLDQVNRHEIIRYLNHLMFEQNR 59 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + + ++ ++ + + V EY+ NP + K + T+++M+ + Sbjct: 60 SKAYVSNIMSIIKSFYSFLVENEYITANPAKGISSVKIDKKAPIYLTQDEMRA-LIETAL 118 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAM 247 + L + L +G+R S+ Q + + K V +PD L Sbjct: 119 DPRDNLIVKMLYATGVRVSELVNIKKQDIDLDRNTIKVFGKGAKERIVLVPDVLKAQLET 178 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAH 305 G D N KA A +AG+NK + H +R AT G Sbjct: 179 YCAGFPEGQKLFDL---NIRTVERDIKALAVRAGINKKVTPHKLRHSFATHMLQNGGNVV 235 Query: 306 ELMATYGWKTVDQAETYTK-GADRIRLGIKN 335 + G +++ + YT D ++ + Sbjct: 236 AIQKLLGHTSLNTTQIYTHYSVDELKDMYAH 266 >gi|196251170|ref|ZP_03149847.1| integrase family protein [Geobacillus sp. G11MC16] gi|196209334|gb|EDY04116.1| integrase family protein [Geobacillus sp. G11MC16] Length = 310 Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 43/277 (15%), Positives = 94/277 (33%), Gaps = 22/277 (7%) Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD----FDYRKIT----TKHI 119 T + L+ + + +L ++ + S + I+ + + T ++I Sbjct: 11 EYTFEELLEIFIEDCELRNLREHTIKYYRSELNAFIKLLKEQEIELRVSEWTGETIKRNI 70 Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 ++ + S L ++R F + + + NP ++ K + + + + + Sbjct: 71 IMYMKEKGLKTVSINSRLRALRAFFNFLEGRNLIKSNPMKDIKLLKDRKRIVETFDNQQI 130 Query: 180 QQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TII 233 + G + LL +G+R ++ + I+ + T Sbjct: 131 KALFKACDLRTFVGLRDYTIMMLLLETGVRVNELVGIKTTDIIWEQKVIRIRNTKGGFER 190 Query: 234 TVELPDGFMKLLAMTP-----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KS 285 V + D + L + + FI D ++ Q K KAG+ S Sbjct: 191 FVPIQDKMINQLKKYIAVRGSVDTDYLFITRDDTPLSKKQVQDRIKEYGKKAGIKNVRCS 250 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 H R A + GA A +L A G +++ + Y Sbjct: 251 PHTFRHTFAKLCVLNGANAFQLQAILGHTSLEMTKVY 287 >gi|145632561|ref|ZP_01788295.1| tyrosine recombinase [Haemophilus influenzae 3655] gi|148825411|ref|YP_001290164.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae PittEE] gi|229845011|ref|ZP_04465148.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae 6P18H1] gi|260582592|ref|ZP_05850382.1| tyrosine recombinase XerD [Haemophilus influenzae NT127] gi|144986756|gb|EDJ93308.1| tyrosine recombinase [Haemophilus influenzae 3655] gi|148715571|gb|ABQ97781.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae PittEE] gi|229812145|gb|EEP47837.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae 6P18H1] gi|260094403|gb|EEW78301.1| tyrosine recombinase XerD [Haemophilus influenzae NT127] gi|301169019|emb|CBW28616.1| site-specific tyrosine recombinase [Haemophilus influenzae 10810] Length = 297 Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 42/281 (14%), Positives = 91/281 (32%), Gaps = 24/281 (8%) Query: 73 WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESR 126 LI + L+ N+ S+ + D + + + Sbjct: 5 ALIDLFLNEYWIEKGLSENTVQSYRLDLTALCDWLDKNDLSLETLDAVDLQGFLGERLEK 64 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + +S + L++MR LF++ R++Y +P + PK + + T++ + + Sbjct: 65 GYKATSTARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQVSDLLNTP 124 Query: 187 ----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 + + E L +GLR ++ ++++ ++ V + + Sbjct: 125 DVEVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKGNKERIVPMGEEA 184 Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 + + F + Q+M F K A A ++ S H Sbjct: 185 AYWVRQFMLYGRPVLLNGQSSDVVFPSQRAQQMTRQTFWHRVKHYAILADIDADALSPHV 244 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R AT + GA + G + + YT A Sbjct: 245 LRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKER 285 >gi|56707324|ref|YP_169220.1| integrase/recombinase [Francisella tularensis subsp. tularensis SCHU S4] gi|110669794|ref|YP_666351.1| integrase/recombinase [Francisella tularensis subsp. tularensis FSC198] gi|224456388|ref|ZP_03664861.1| integrase/recombinase [Francisella tularensis subsp. tularensis MA00-2987] gi|254370002|ref|ZP_04986009.1| site-specific recombinase [Francisella tularensis subsp. tularensis FSC033] gi|254874160|ref|ZP_05246870.1| integrase/recombinase [Francisella tularensis subsp. tularensis MA00-2987] gi|54114539|gb|AAV29903.1| NT02FT0289 [synthetic construct] gi|56603816|emb|CAG44787.1| Integrase/recombinase [Francisella tularensis subsp. tularensis SCHU S4] gi|110320127|emb|CAL08170.1| Integrase/recombinase [Francisella tularensis subsp. tularensis FSC198] gi|151568247|gb|EDN33901.1| site-specific recombinase [Francisella tularensis subsp. tularensis FSC033] gi|254840159|gb|EET18595.1| integrase/recombinase [Francisella tularensis subsp. tularensis MA00-2987] gi|282158450|gb|ADA77841.1| Integrase/recombinase [Francisella tularensis subsp. tularensis NE061598] Length = 292 Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 43/280 (15%), Positives = 96/280 (34%), Gaps = 25/280 (8%) Query: 71 LKWLIS-EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--- 126 + + + + L+ N+ S+ + + D + + + + + R Sbjct: 5 VDAFLDNLWLEH----GLSQNTISSYRTDLKFLQNYFAKTDLISLDFEQLYAFISYRSKN 60 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 ++ S + ++++R + W + NP + PK + + T+ D+++ Sbjct: 61 GYSSHSNARMISTLRKFYAWLISTGQTNNNPTAKLTLPKLAKKLPKDMTETDVERLLQAP 120 Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGF 241 G + + E + +GLR S+ + + NI K V + + Sbjct: 121 DMTEDVGIRDKAMLELMYATGLRVSELVGLNIDDIDINIGVIQVMGKGSKERIVPIGEYA 180 Query: 242 MKLLAMTP----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289 ++ L ++ FI+ +++ F K A AG+ + S H + Sbjct: 181 LEYLQKYFAEARRSLSENFKEKAVFISKHAKRITRQSFWHRIKNYALIAGINTDISPHTL 240 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + GA + G V YT + Sbjct: 241 RHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNR 280 >gi|119385371|ref|YP_916427.1| phage integrase family protein [Paracoccus denitrificans PD1222] gi|119375138|gb|ABL70731.1| phage integrase family protein [Paracoccus denitrificans PD1222] Length = 335 Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 73/330 (22%), Positives = 140/330 (42%), Gaps = 14/330 (4%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLP----YPHESTFIPAYMSALTGSTPKREYINSP 64 P++ + + R G+ + +R+G + I L +P + AY + + +P Sbjct: 5 PYL-RSKLRRGRWFHTYRRGD-KEISLGVHGLHPTDPRVFAAYCAEHARWEHRPPETATP 62 Query: 65 RKKPTTLKWLISEYRKSAHWGSL---AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121 + T W + Y S +W L + +R + ++ + +R G+ IT + I + Sbjct: 63 KS--GTFAWAVDLY-TSGNWKWLNEYSEGTRKARQAILKRYVRAQGNRPLSAITPRDIEN 119 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 A+ ++R +F+ R ++ NP + +E + + + +D+ Sbjct: 120 --ALYAKGGHGAVNDFKALRPVFEHVKRLGFITRNPMIGIELDRPMSNELPTADADDIAA 177 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 F W G+ RL F+ LY+G +D G +++ N+ KTG V + Sbjct: 178 FIKRWEVGTVERLIFDLGLYTGAARADLAVIGRHNIKGNVLIFNRVKTGVPSYVPITPEL 237 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAG 301 ++A TP TF ++ ++ F+ A AG+ HG+RK A+ G Sbjct: 238 RAVIARTPDISPTFILSKWRKPYQPQSLGQRFEEAAVAAGMKARLHGLRKAFCVYWAENG 297 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRL 331 T H++ A G T+ + E YT+ ADR ++ Sbjct: 298 KTVHQIAAMAGHLTLKEVERYTRAADREQI 327 >gi|325571148|ref|ZP_08146720.1| integrase/recombinase XerD [Enterococcus casseliflavus ATCC 12755] gi|325156233|gb|EGC68419.1| integrase/recombinase XerD [Enterococcus casseliflavus ATCC 12755] Length = 296 Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 43/269 (15%), Positives = 97/269 (36%), Gaps = 24/269 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRKHTP---SSAIQFLT 138 L+ N+R S++ Q + + I + S ++S + ++ I+ ++ Sbjct: 16 RGLSQNTRASYQRDLQQYLAFLQKKQVTQWQQIDRVIVLSFLQSLQEAGKSSATVIRMVS 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFWSEGSQPRL 194 S+R ++ ++ + +P ++ PK++ + + ++ ++ + G + R Sbjct: 76 SLRRFHQFLRQERFTDHDPMQHIDSPKKQQKLPDTLSLQEVERLIETPDTRAVLGIRDRA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVE-----------LPDGFM 242 E + +GLR S+ + L ++ T K V Sbjct: 136 ILEVMYATGLRVSELIGLKLNDLHLSMGLLQTTGKGDKERIVPLGDLAIQWIETYLSDAR 195 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 L + F+NN +++ KA +AG+ K + H +R AT + Sbjct: 196 PYLTRKTPDESHLFVNNHGTQLSRQGIWKNLKALVRQAGITKNVTPHTLRHSFATHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329 GA + G + + YT + Sbjct: 256 GADLRTVQELLGHADISTTQIYTHITKKR 284 >gi|300718203|ref|YP_003743006.1| Tyrosine recombinase [Erwinia billingiae Eb661] gi|299064039|emb|CAX61159.1| Tyrosine recombinase [Erwinia billingiae Eb661] Length = 297 Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 43/282 (15%), Positives = 94/282 (33%), Gaps = 24/282 (8%) Query: 72 KWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVES 125 LI ++ + +LA N+ S+ + + + + Sbjct: 4 SDLIEQFLDALWIERNLAENTVASYRLDLLSLAGWLQHNESNLLRVDAVDLQGFLAERVE 63 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + +S+ + L++MR LF++ R++ +P + PK + ++ + + Sbjct: 64 GGYKATSSARLLSAMRRLFQYLYREKLREDDPSALLASPKLPQRLPKDLSEAQIDRLLQA 123 Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDG 240 + + E L +GLR ++ + ++ ++ V L + Sbjct: 124 PSVEQPIELRDKAMLELLYATGLRVTELVSLTLNNVSLRQGVVRVIGKGDKERLVPLGEE 183 Query: 241 FMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287 + + + F ++ Q+M F K AT AG++ S H Sbjct: 184 AVHWIEQYLEYGRPWLLNGQTLDVLFPSSRAQQMTRQTFWHRIKHYATLAGIDSAKLSPH 243 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R AT + GA + G + + YT A Sbjct: 244 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 285 >gi|24372537|ref|NP_716579.1| integrase/recombinase XerD [Shewanella oneidensis MR-1] gi|34222794|sp|Q7ZAJ8|XERD_SHEON RecName: Full=Tyrosine recombinase xerD gi|24346549|gb|AAN54024.1|AE015540_4 integrase/recombinase XerD [Shewanella oneidensis MR-1] Length = 300 Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 45/283 (15%), Positives = 96/283 (33%), Gaps = 28/283 (9%) Query: 74 LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR---K 127 LI + L+ N+ ++ + R R + +R+ + R + Sbjct: 10 LIDAFLDDLWSSKGLSDNTLSAYRTDLRHFDRYLQSQGLRLRDVGQADVRAYLAYRVEQQ 69 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +S+ + L+S+R + + ++ + ++ +P +E PK ++ + + + + Sbjct: 70 FARTSSARLLSSLRRFYNYLLQTKQISGDPMAQIESPKLSRHLPDSLSESQVDRLLAEPN 129 Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-------------KTG 230 + + E L +GLR S+ ++ + ++ Sbjct: 130 VDDPVECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVRIIGKGGKERLVPMGEMAI 189 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHG 288 T + L +LL + F K A++AG+ S H Sbjct: 190 TEVEHYLTSARHELLGHIQSDVVFPSKRSQMM--TRQTFWHRIKLYASRAGIETELSPHT 247 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +R AT + GA + G + + YT A R RL Sbjct: 248 LRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVA-RARL 289 >gi|262166461|ref|ZP_06034198.1| tyrosine recombinase XerD [Vibrio mimicus VM223] gi|262170635|ref|ZP_06038313.1| tyrosine recombinase XerD [Vibrio mimicus MB-451] gi|261891711|gb|EEY37697.1| tyrosine recombinase XerD [Vibrio mimicus MB-451] gi|262026177|gb|EEY44845.1| tyrosine recombinase XerD [Vibrio mimicus VM223] Length = 302 Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 45/280 (16%), Positives = 103/280 (36%), Gaps = 24/280 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR---K 127 L+ ++ + LA N+ S+ + +++ + I+ ++ Sbjct: 11 LVEQFLDAMWLERGLAENTVASYRNDLSKLLEWMAQHQYRLDFISFSGLQEYQSWLSEQN 70 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + P+S + L+++R LF++ R++ A +P + PK T + T+ ++ S Sbjct: 71 YKPTSKARMLSAIRRLFQYLHREKVRADDPSALLISPKLPTRLPKDLTEAQVEALLSAPD 130 Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM 242 + + + E L +GLR ++ ++++ ++ G V + + + Sbjct: 131 PQTPIELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVIGKGGKERLVPMGENAI 190 Query: 243 KLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289 + + + F ++ Q+M F K A A ++ S H + Sbjct: 191 EWIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAEIDVELLSPHVL 250 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + GA + G + + YT A Sbjct: 251 RHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER 290 >gi|315640591|ref|ZP_07895697.1| integrase/recombinase XerD [Enterococcus italicus DSM 15952] gi|315483619|gb|EFU74109.1| integrase/recombinase XerD [Enterococcus italicus DSM 15952] Length = 296 Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 46/280 (16%), Positives = 99/280 (35%), Gaps = 25/280 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR---KITTKHIRSGVESRKH-- 128 I +Y L++N+R S+E Q +I I + +E K Sbjct: 5 IEDYLHFLTIERGLSLNTRSSYERDLKQYYTFVQTKQITSWQQIDRYTILAFLEQLKKEN 64 Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT----KEDMQQFK 183 + ++ + ++S+R ++ ++ + +P ++ PK+ + + + + Sbjct: 65 KSTATITRMISSLRRFHQFLRQERHTDHDPMQHIDTPKKVQKLPDTLSLKEVERLIDTPD 124 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFM 242 + G + R E + +GLR S+ + + + N+ K V L D + Sbjct: 125 TRKILGIRDRAILEVMYATGLRVSELIQLQLSDIHLNMALLQTIGKGDKERIVPLGDMAI 184 Query: 243 KLLAMT-----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289 L + + F+N+ +K+ K AG++K+ H + Sbjct: 185 HWLEVYLSDARPILVSKQPNETALFVNSHGKKLTRQGIWKNLKEIVRAAGIHKTVTPHTL 244 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + GA + G + + YT + Sbjct: 245 RHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKR 284 >gi|299771869|ref|YP_003733895.1| site-specific tyrosine recombinase [Acinetobacter sp. DR1] gi|298701957|gb|ADI92522.1| site-specific tyrosine recombinase [Acinetobacter sp. DR1] Length = 306 Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 44/275 (16%), Positives = 89/275 (32%), Gaps = 19/275 (6%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130 + +R +++ ++R ++ S Q + T+ I + +P Sbjct: 20 FLQGFRDYLVAQTVSPHTRNAYLSDLIQCSELHQKTALPQWTSDDIADVLIELTKAGKSP 79 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 S + L+++R +K+ Q+ + NP + PK + ++ED++ + Sbjct: 80 RSIARCLSALRQFYKFLREQKLRSDNPVATHHSPKIGRALPKDLSEEDVEALIQAPDINT 139 Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLL 245 + R FE L GLR S+ ++ + ++ V L + + Sbjct: 140 ALGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGYLRVTGKGNKERLVPLGQFACEWV 199 Query: 246 AMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 M+ F K A +A + S H +R A Sbjct: 200 ERYLHNARPQLYKSSTDYLFLTQHGGIMSRQNFWYAIKRYALQANIQAELSPHTLRHAFA 259 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 T + GA + G + + YT A Sbjct: 260 THLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR 294 >gi|288928808|ref|ZP_06422654.1| integrase/recombinase XerD [Prevotella sp. oral taxon 317 str. F0108] gi|288329792|gb|EFC68377.1| integrase/recombinase XerD [Prevotella sp. oral taxon 317 str. F0108] Length = 304 Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 46/283 (16%), Positives = 99/283 (34%), Gaps = 23/283 (8%) Query: 65 RKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRK--SGDFDYRKITTKHIRS 121 ++ T+ ++ Y + +L+ N+ ++ + ++ ++ +H+ + Sbjct: 2 ERENKTVDNMVKAYMRYLKLERNLSPNTIEAYRNDLRWLLAYVNFHGLKVEELKLEHLDN 61 Query: 122 GVESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 S P S + L+ +R FK+ + ++ +P + P + + + Sbjct: 62 FSASLHDQRIMPRSQARILSGVRSFFKFLLLDGFIDADPTELLVSPHVRNALPDVLSTAE 121 Query: 179 MQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTII 233 + + ++ EG + R E L GLR S+ + +L ++ Sbjct: 122 VDRLEASIDLSKWEGQRNRAIVEVLFSCGLRVSELVNLKLSNLYVEEKFVRVTGKGDKER 181 Query: 234 TVELPDGFMKLLAMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKAGVN 283 V + + L + I N + T I K +A AG+ Sbjct: 182 LVPISSRALDELNAWFADRNAMRIKPGEEDYVFLNRRGAHLTRTMILIMIKRQAVAAGIT 241 Query: 284 KS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 K+ H +R AT + GA + A G + + E YT Sbjct: 242 KTISPHTLRHSFATALLEGGADLIAIQAMMGHEDIATTEIYTH 284 >gi|320540116|ref|ZP_08039771.1| site-specific tyrosine recombinase [Serratia symbiotica str. Tucson] gi|320029782|gb|EFW11806.1| site-specific tyrosine recombinase [Serratia symbiotica str. Tucson] Length = 299 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 43/279 (15%), Positives = 93/279 (33%), Gaps = 24/279 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVESRKH 128 I ++ + +LA N+ +S+ ++ + + + + + Sbjct: 9 IEQFLDALWLERNLAENTLVSYRLDLQALVAWLNHQNITLLQAQALDLQAFLAERVDGGY 68 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +S+ + L++MR LF++ R++ A +P + PK + ++ + Sbjct: 69 KATSSARLLSAMRRLFQYLYREKLRADDPTTRLASPKLPQRLPKDLSEAQIDALLKAPCV 128 Query: 189 G----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243 + + E L +GLR S+ + + ++ V L + + Sbjct: 129 DQPIELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKERLVPLGEEAVY 188 Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290 + + F + Q+M F K A AG++ S H +R Sbjct: 189 WIENYLEHGRPWLVNSQALDVLFPSQRCQQMTRQTFWHRIKHYAILAGIDSERLSPHVLR 248 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + GA + G + + YT A Sbjct: 249 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 287 >gi|270295321|ref|ZP_06201522.1| tyrosine recombinase XerD [Bacteroides sp. D20] gi|270274568|gb|EFA20429.1| tyrosine recombinase XerD [Bacteroides sp. D20] Length = 317 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 60/313 (19%), Positives = 113/313 (36%), Gaps = 27/313 (8%) Query: 58 REYINSPRKKPTTLKWLISEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGDFDYRKITT 116 + S K+ TL +I +Y + L+ N+ ++++ +++ + T Sbjct: 2 KSEEKSTNKEKQTL--IIRKYHQYLKLEKALSPNTVDAYQTDLQKLLHFLEGEGIAILDT 59 Query: 117 -----KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 +H SG+ P S + L+ ++ F + V +Y+ +P +E PK + Sbjct: 60 TLDDLQHFASGLHDIGIHPRSQARILSGIKSFFHFLVIADYLEGDPSELLEGPKIGFKLP 119 Query: 172 RPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKT 226 T E++ + S G+ + R E L GLR S+ C + L + F Sbjct: 120 EVLTVEEIDRIISAIDLGTNEGQRNRAILETLYSCGLRVSELCNLKISDLYFDEGFIKVE 179 Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFIN-----------NDKQKMNATQFSIWFKA 275 K V + +K + + + + + ++ K Sbjct: 180 GKGSKQRLVPISSRAIKEIRNWFVDRNGGWKIKKDFEDYVFLARWGKNISRIMVFHLIKE 239 Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 A KAG+ K S H R AT + GA + + G +++ E YT DR RL Sbjct: 240 LAEKAGITKNISPHTFRHSFATHLLEGGANLRAIQSMLGHESIATTEIYTH-IDRHRLRS 298 Query: 334 KNSRRISSVVDSD 346 + + Sbjct: 299 EIIEHHPRNIKYR 311 >gi|69248064|ref|ZP_00604609.1| Phage integrase:Phage integrase, N-terminal SAM-like [Enterococcus faecium DO] gi|68194583|gb|EAN09074.1| Phage integrase:Phage integrase, N-terminal SAM-like [Enterococcus faecium DO] Length = 284 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 40/268 (14%), Positives = 93/268 (34%), Gaps = 23/268 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYR---KITTKHIRSGVESR---KHTPSSAIQFLT 138 L+ N+R S+E +Q + + + + +E K ++ + ++ Sbjct: 5 RGLSANTRQSYERDLEQYLHFLQEQKIASWQDVDRFLVIRFLEKLHEEKKATATVTRMIS 64 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRL 194 S+R ++ ++ +P ++ PK+ + T ++++ G + R Sbjct: 65 SLRRFHQFLRQERITDHDPMQHIDTPKKAQKLPSTLTLTEVEKLIEAPDTTKTLGIRDRA 124 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLAMT----- 248 E + +G+R S+ + L ++ K + L D ++ L Sbjct: 125 ILEVMYATGMRVSELIGLKLGDLHLSLGLVQTVGKGDKERIIPLGDYAIQWLERYLDEAR 184 Query: 249 -----PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAG 301 + F+NN + ++ K +AG+ + H +R AT + G Sbjct: 185 PLLVKDASEMHVFVNNHGKGLSRQGIWKNLKQLVREAGIYKEVTPHTLRHSFATHLLENG 244 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRI 329 A + G + + YT + Sbjct: 245 ADLRTVQELLGHADISTTQIYTHITKKR 272 >gi|206576348|ref|YP_002236649.1| tyrosine recombinase XerD [Klebsiella pneumoniae 342] gi|290511308|ref|ZP_06550677.1| tyrosine recombinase XerD [Klebsiella sp. 1_1_55] gi|206565406|gb|ACI07182.1| tyrosine recombinase XerD [Klebsiella pneumoniae 342] gi|289776301|gb|EFD84300.1| tyrosine recombinase XerD [Klebsiella sp. 1_1_55] Length = 298 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 40/279 (14%), Positives = 93/279 (33%), Gaps = 24/279 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR---KH 128 I ++ + +LA N+ ++ ++ + + +++ + R + Sbjct: 8 IEQFLDALWLERNLAENTLSAYRRDLTMLVEWLHHRGLSLASVGSDDLQALLAERQTGGY 67 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--- 185 +S + L+++R F+ R++ +P + PK + ++ +++ Sbjct: 68 KATSTARLLSAVRRFFQHLYREKIRPDDPSALLASPKLPQRLPKDLSEAQVERLLQAPLV 127 Query: 186 -WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243 + + E L +GLR S+ + + ++ V L + + Sbjct: 128 EQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVLRVIGKGNKERLVPLGEEAVM 187 Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290 + + F + Q+M F K A AG++ S H +R Sbjct: 188 WVENYLEYGRPWLLNGVASDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSAKLSPHVLR 247 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + GA + G + + YT A Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286 >gi|134287379|ref|YP_001110762.1| putative integrase [Clostridium phage phiC2] gi|93117217|gb|ABE99507.1| putative integrase [Clostridium phage phiC2] Length = 404 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 40/384 (10%), Positives = 104/384 (27%), Gaps = 57/384 (14%) Query: 15 RTRHGKIIYYFRKG--HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 R R K YYF G G+R ++ +T A S + +L Sbjct: 22 RKRGKKWYYYFDAGIVDGKRKKVERVGGNTKKEAEKSLRDAINEYENAGIVFDETNMSLS 81 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 ++ + K + N++ S+ + + I + G + I I+ + ++ Sbjct: 82 DYLNFWYKEYVLLNCKYNTQESYRNLIENHIEPRLGKCKLKSINPAIIQEFLNNKSKETY 141 Query: 132 SAI-----QFLTSMRVLF-------------KWAVRQEYVAINPCLSVERPKRKTEGIRP 173 + ++ ++ +++ V + + Sbjct: 142 TQNGEEKHYTKGVLKAIYVVLNAALKSAVYPYKLIKENPVQYASIPKNVLKVKNESDNKT 201 Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233 T ++ + + + + + ++G+R + ++ + IK +K Sbjct: 202 ITLDEFNKILEIYPKNTNIYIPLLIGFHTGMRKGEILGLCWDNVDLDNNIIKVRKNLIKR 261 Query: 234 T---------------------------------VELPDGFMKLLAMTPIGKETFFINND 260 + + D Sbjct: 262 KVSEFELASPKTKTSIRDIKIGDTLSRILKEEKLNQKKQKIKIGKWYKETEYDWVCRKKD 321 Query: 261 KQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320 +N + K +N + H +R AT+ + GA + G + Sbjct: 322 GSFVNHNNIDAAIRTINKKLNINFNFHCLRHTHATLLLENGANVKYIQQRLGHSQLSTTM 381 Query: 321 -TYTKGADRIRLGIKNSRRISSVV 343 TY+ ++ + + ++ Sbjct: 382 DTYSHVTS--KMESETIDILEGIL 403 >gi|167038625|ref|YP_001666203.1| phage integrase family protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320117017|ref|YP_004187176.1| integrase family protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166857459|gb|ABY95867.1| phage integrase family protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319930108|gb|ADV80793.1| integrase family protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 372 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 48/356 (13%), Positives = 109/356 (30%), Gaps = 48/356 (13%) Query: 28 GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87 G ++ + ++ + K E TL ++++ ++ L Sbjct: 24 GKRKQKWISGFKTKKEAEKALAEIIAKIEKNEL----ELTNLTLGQFLNKWYETHCELKL 79 Query: 88 AVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVL 143 A + S++ + GD + K+ I++ K + ++ ++ Sbjct: 80 APKTLKSYKELIELYFKPYLGDIELTKLKPVMIQNYYNKLKELGLSDTTINYHHRVLKSA 139 Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203 K AV + ++ NPC VE PK+ I W+ D+++ K + + L F LY+G Sbjct: 140 LKKAVVWQLISKNPCDYVEPPKKNKNEITVWSINDVKKAKE-IFKDTPIYLHFMLALYTG 198 Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------------ITVELPDGFMKLLA- 246 +R + C + + N + ++ + L +++L Sbjct: 199 MRIGEICGLKWEDIDFNNKTCTVKRQYQQVGGKEIIKEPKSETSIRVIPLHSDVIEVLKE 258 Query: 247 ---------------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGV 289 + + D + S F H + Sbjct: 259 EKKKQLQNRMLLGEKYNKKYEGYISVWEDGRMKTPEYVSKKFSKILKAYPELPQIRFHDL 318 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAE-TYTKG-ADRIRLGIKNSRRISSVV 343 R A+ AG + G + Y+ D + + +++ + Sbjct: 319 RHSCASFLVQAGVPMKVVSEILGHSQIGITMDLYSHVLLDSKK---EAIKKLEEYL 371 >gi|145636556|ref|ZP_01792224.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae PittHH] gi|145270381|gb|EDK10316.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae PittHH] Length = 297 Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats. Identities = 42/281 (14%), Positives = 91/281 (32%), Gaps = 24/281 (8%) Query: 73 WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESR 126 LI + L+ N+ S+ + D + + + Sbjct: 5 ALIDLFLNEYWIEKGLSENTVQSYRLDLTALCDWLDKNDLSLETLDAVDLQGFLGERLEK 64 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + +S + L++MR LF++ R++Y +P + PK + + T++ + + Sbjct: 65 GYKATSTARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQVSDLLNTP 124 Query: 187 ----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 + + E L +GLR ++ ++++ ++ V + + Sbjct: 125 DVEVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKGNKERIVPMGEEA 184 Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 + + F + Q+M F K A A ++ S H Sbjct: 185 AYWVRQFILYGRPVLLNGQSSDVVFPSQRAQQMTRQTFWHRVKHYAILADIDADTLSPHV 244 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R AT + GA + G + + YT A Sbjct: 245 LRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKER 285 >gi|314939481|ref|ZP_07846715.1| tyrosine recombinase XerD [Enterococcus faecium TX0133a04] gi|314941112|ref|ZP_07848010.1| tyrosine recombinase XerD [Enterococcus faecium TX0133C] gi|314948724|ref|ZP_07852096.1| tyrosine recombinase XerD [Enterococcus faecium TX0082] gi|314951697|ref|ZP_07854740.1| tyrosine recombinase XerD [Enterococcus faecium TX0133A] gi|314993956|ref|ZP_07859283.1| tyrosine recombinase XerD [Enterococcus faecium TX0133B] gi|314997520|ref|ZP_07862465.1| tyrosine recombinase XerD [Enterococcus faecium TX0133a01] gi|313588431|gb|EFR67276.1| tyrosine recombinase XerD [Enterococcus faecium TX0133a01] gi|313591558|gb|EFR70403.1| tyrosine recombinase XerD [Enterococcus faecium TX0133B] gi|313596161|gb|EFR75006.1| tyrosine recombinase XerD [Enterococcus faecium TX0133A] gi|313600113|gb|EFR78956.1| tyrosine recombinase XerD [Enterococcus faecium TX0133C] gi|313641283|gb|EFS05863.1| tyrosine recombinase XerD [Enterococcus faecium TX0133a04] gi|313644790|gb|EFS09370.1| tyrosine recombinase XerD [Enterococcus faecium TX0082] Length = 300 Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats. Identities = 42/279 (15%), Positives = 98/279 (35%), Gaps = 24/279 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR---KITTKHIRSGVESR---K 127 I++Y + L+ N+R S+E +Q + + + + +E K Sbjct: 10 INDYLHYLNIERGLSANTRQSYERDLEQYLHFLQEQKIASWQDVDRFLVIRFLEKLHEEK 69 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 ++ + ++S+R ++ ++ +P ++ PK+ + T ++++ Sbjct: 70 KATATVTRMISSLRRFHQFLRQERITDHDPMQHIDTPKKAQKLPSTLTLTEVEKLIEAPD 129 Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFM 242 G + R E + +G+R S+ + L ++ K + L D + Sbjct: 130 TTKTLGIRDRAILEVMYATGMRVSELIGLKLGDLHLSLGLVQTVGKGDKERIIPLGDYAI 189 Query: 243 KLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290 + L + F+NN + ++ K +AG+ + H +R Sbjct: 190 QWLERYLDEARPLLVKDASEMHVFVNNHGKGLSRQGIWKNLKQLVREAGIYKEVTPHTLR 249 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + GA + G + + YT + Sbjct: 250 HSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKR 288 >gi|54399934|gb|AAV34206.1| site-specific recombinase [Pseudomonas fluorescens] Length = 298 Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats. Identities = 51/291 (17%), Positives = 106/291 (36%), Gaps = 24/291 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRK 127 LI ++ + L+ N+R ++ S + I + + Sbjct: 8 LIDQFLDALWLEKGLSDNTRDAYRSDLALFNGWLQENHLELINAGRELILDHLAWRLEQN 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + P S +FL+ +R +++ +R++ +A++P L VE P+ + ++ D++ + Sbjct: 68 YKPRSTARFLSGLRGFYRYLLREKLIAVDPTLRVEMPQLGRPLPKSLSEADVEALLAAPD 127 Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 G + R E L GLR ++ ++ + ++ V + + + Sbjct: 128 LSEAIGQRDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEEAI 187 Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290 + F + ++M F K +A AG+NKS H +R Sbjct: 188 VWVERYVRDARHELLGGRPSDALFPSLRGEQMTRQTFWHRIKHQAKVAGINKSLSPHTLR 247 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 AT + GA + G + + YT A R RL +++ Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQDLHAKHHPR 297 >gi|145638777|ref|ZP_01794386.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae PittII] gi|148827463|ref|YP_001292216.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae PittGG] gi|145272372|gb|EDK12280.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae PittII] gi|148718705|gb|ABQ99832.1| tyrosine recombinase [Haemophilus influenzae PittGG] gi|309750267|gb|ADO80251.1| Site-specific, tyrosine recombinase XerD [Haemophilus influenzae R2866] Length = 297 Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats. Identities = 43/281 (15%), Positives = 94/281 (33%), Gaps = 24/281 (8%) Query: 73 WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESR--- 126 LI + L+ N+ S+ + D + H++ + R Sbjct: 5 ALIDLFLNEYWIEKGLSENTVQSYRLDLTALCDWLDKNDLSLETLDAVHLQGFLGERLEK 64 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + +S + L+++R LF++ R++Y +P + PK + + T++ + + Sbjct: 65 GYKATSTARMLSAIRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQVSDLLNTP 124 Query: 187 ----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 + + E L +GLR ++ ++++ ++ V + + Sbjct: 125 DVEVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKGNKERIVPMGEEA 184 Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 + + F + Q+M F K A A ++ S H Sbjct: 185 AYWVRQFMLYGRPVLLNGQSSDVVFPSQRTQQMTRQTFWHRVKHYAILADIDADALSPHV 244 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R AT + GA + G + + YT A Sbjct: 245 LRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKER 285 >gi|325299547|ref|YP_004259464.1| Tyrosine recombinase xerC [Bacteroides salanitronis DSM 18170] gi|324319100|gb|ADY36991.1| Tyrosine recombinase xerC [Bacteroides salanitronis DSM 18170] Length = 316 Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats. Identities = 58/316 (18%), Positives = 111/316 (35%), Gaps = 24/316 (7%) Query: 55 TPKREYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-----GD 108 P++ K+ T + ++ +YR+ SL+ N+ ++ + D+++ G Sbjct: 1 MPRKNSAQRYEKEMKTYEKILLKYRQYLKLERSLSGNTIDAYLTDLDKLLAYLTLEGIGI 60 Query: 109 FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168 D ++ +G+ P S + L+ +R F++ +Y+ +P +E P+ Sbjct: 61 TDVTLQDLENFSAGLHDIGIHPRSQARILSGIRSFFRFLTLDDYIRQDPSELLESPQIGK 120 Query: 169 EGIRPWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFS 223 T E++ EG + R E L GLR S+ C + L + F Sbjct: 121 HLPDVLTVEEIDALIGAIDETTPEGQRNRAILETLYSCGLRVSELCNLKLSDLYLDEGFI 180 Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPI----------GKETFFINNDKQKMNATQFSIWF 273 K V + + L ++ FI+ + ++ Sbjct: 181 KVEGKGSKQRLVPISPRAVNELKNYFTERGYAKIKPGYEDFVFISRFGKNISRIMVFHII 240 Query: 274 KAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 K A + G+ K+ H R AT + GA + A G +++ E YT DR L Sbjct: 241 KELAERIGLKKTISPHTFRHSFATHLLEGGANLRAIQAMLGHESIGTTEIYTH-IDRSML 299 Query: 332 GIKNSRRISSVVDSDD 347 + Sbjct: 300 RQEIIEHHPRNKKKRF 315 >gi|319937347|ref|ZP_08011754.1| site-specific tyrosine recombinase xerD [Coprobacillus sp. 29_1] gi|319807713|gb|EFW04306.1| site-specific tyrosine recombinase xerD [Coprobacillus sp. 29_1] Length = 301 Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats. Identities = 48/291 (16%), Positives = 97/291 (33%), Gaps = 26/291 (8%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVESRK 127 + EY++ + + ++E I + + H+ ++ Sbjct: 5 DALKEYKQYMIVEKGYSRYTVENYERDILHFINFIHKKYEVDNVNNVIKDHMYHYLKDLH 64 Query: 128 H--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + SS + +TS++ + + V++ + N S E K+ T ++ Q Sbjct: 65 NHLKASSVDRHMTSLKQFYIFLVKENIIKDNIMSSFEMSKKAKYLPEVLTVGEVNQLLDS 124 Query: 186 WSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KTGTIITVELPDG 240 + G + R E L SGLR S+ C +Q++ + +K K V + + Sbjct: 125 IAVGDPVSARNRCMVEVLYASGLRVSEMCFLTLQNVNIHKGFVKCIGKRNKERIVPMNEN 184 Query: 241 FMKLLAMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288 LL N Q + F + K+G+ K + H Sbjct: 185 CCLLLKEYIEEYRPQLCEEVSSQYLFINKRGQPIQRDDFYHILENIVKKSGLKKHVTPHT 244 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 +R AT + A + G + YT ++ I+ R++ Sbjct: 245 LRHTFATHLLENDADLRSIQEMLGHSDISTTTIYTHVSNNK--AIEEYRKL 293 >gi|294840865|ref|ZP_06785548.1| site-specific tyrosine recombinase [Acinetobacter sp. 6014059] gi|323516350|gb|ADX90731.1| site-specific recombinase XerD [Acinetobacter baumannii TCDC-AB0715] Length = 306 Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats. Identities = 46/275 (16%), Positives = 87/275 (31%), Gaps = 19/275 (6%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130 + +R +++ ++R ++ S Q T+ I + +P Sbjct: 20 FLQGFRDYLVAQTVSPHTRNAYLSDLIQCSELHKKNRLPDWTSDDISDVLIELTKVGKSP 79 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-- 188 S + L+++R +K+ Q+ + NP + PK + +ED++ Sbjct: 80 RSIARCLSALRQFYKFLREQKLRSDNPVATHHSPKIGRALPKDLCEEDVEALIQAPDITT 139 Query: 189 --GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLL 245 G + R FE L GLR S+ ++ + ++ V L + Sbjct: 140 ALGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGYLRITGKGNKERLVPLGQYACDWV 199 Query: 246 AMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 F M+ F K A +A + S H +R A Sbjct: 200 ERYLNEARPQFYKSSTDYLFLTQHGGIMSRQNFWYAIKRYALQANIQAELSPHTLRHAFA 259 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 T + GA + G + + YT A Sbjct: 260 THLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR 294 >gi|332158066|ref|YP_004423345.1| integrase/recombinase [Pyrococcus sp. NA2] gi|331033529|gb|AEC51341.1| integrase/recombinase [Pyrococcus sp. NA2] Length = 279 Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats. Identities = 40/283 (14%), Positives = 101/283 (35%), Gaps = 18/283 (6%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 I E+ + N+ + Y + + + + + ++ + ++ Sbjct: 3 SETIEEFATYLELEGKSKNTIRMYTYYLSKFLEE--GYSPTARDALRFLARLKKKGYSIR 60 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 S + +++ FK+ ++ PK R T+E++++ + + Sbjct: 61 SINLIVHALKAYFKFEG-----LETEAEKLKTPKIPKTLPRSLTEEEIKKVIEAA-KNLR 114 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--IKTQKTGTIITVELPDGFMKLLAMTP 249 RL L +GLR S+ C ++ + ++ K G + L + ++ + Sbjct: 115 DRLILLLLYGAGLRVSELCNLKIEDVNFEKGFLIVRGGKGGKDRIIPLSETLLQEIQRYL 174 Query: 250 IGKETFFINND-------KQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGA 302 ++ K K++ K +AG+N + H +R AT + G Sbjct: 175 KTRKDNSPYLFVEIRRGKKDKLSPKTVWWIVKKYGEEAGINLTPHQLRHSFATHMLERGI 234 Query: 303 TAHELMATYGWKTVDQAETYTKGADRI-RLGIKNSRRISSVVD 344 + G ++ + YTK + + ++ +R I +++ Sbjct: 235 DIRIIQELLGHASLSTTQIYTKVTTKHLKEAVEKARLIETIIG 277 >gi|148981819|ref|ZP_01816536.1| site-specific tyrosine recombinase XerD [Vibrionales bacterium SWAT-3] gi|145960727|gb|EDK26067.1| site-specific tyrosine recombinase XerD [Vibrionales bacterium SWAT-3] Length = 304 Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats. Identities = 41/280 (14%), Positives = 98/280 (35%), Gaps = 24/280 (8%) Query: 74 LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESR---K 127 L+ ++ + L+ N+ +S+ + +++ ++ I+ ++ Sbjct: 13 LVEQFLDAMWMERGLSENTLVSYRTDLSKLLTWMEQNNYRLDFISLSGLQDYQSWLVDAD 72 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +S + L+++R LF++ R++ A +P + PK + ++E + Sbjct: 73 FKQTSRARMLSAIRRLFQYLHREKVRADDPSALLISPKLPQRLPKDLSEEQVDALLDAPD 132 Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM 242 + + E L +GLR ++ ++++ ++ G V + + + Sbjct: 133 PNDPIELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVIGKGGKERLVPMGENAV 192 Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289 + F + ++M F K A AG++ S H + Sbjct: 193 DWIESFIEQGRPQLLGENSSDVVFPSKRAKQMTRQTFWYRIKHYAVIAGIDTELLSPHVL 252 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + GA + G + + YT A Sbjct: 253 RHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER 292 >gi|239502060|ref|ZP_04661370.1| tyrosine recombinase XerD [Acinetobacter baumannii AB900] Length = 306 Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats. Identities = 45/275 (16%), Positives = 87/275 (31%), Gaps = 19/275 (6%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130 + +R +++ ++R ++ S Q T+ I + +P Sbjct: 20 FLQGFRDYLVAQTVSPHTRNAYLSDLIQCSELHKKNRLPDWTSDDISDVLIELTKVGKSP 79 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-- 188 S + L+++R +K+ Q+ + NP + PK + ++ED++ Sbjct: 80 RSIARCLSALRQFYKFLREQKLRSDNPVATHHSPKIGRALPKDLSEEDVEALIQAPDITT 139 Query: 189 --GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLL 245 G + R FE L GLR S+ ++ + ++ V L + Sbjct: 140 ALGLRDRAMFEILYACGLRVSELLNLRLELINLKQGYLRITGKGNKERLVPLGQYACDWV 199 Query: 246 AMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 M+ F K A +A + S H +R A Sbjct: 200 ERYLNEARPQLYKSSTDYLFLTQHGGIMSRQNFWYAIKRYALQANIQAELSPHTLRHAFA 259 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 T + GA + G + + YT A Sbjct: 260 THLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR 294 >gi|217974605|ref|YP_002359356.1| tyrosine recombinase XerD [Shewanella baltica OS223] gi|217499740|gb|ACK47933.1| tyrosine recombinase XerD [Shewanella baltica OS223] Length = 300 Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats. Identities = 45/283 (15%), Positives = 90/283 (31%), Gaps = 28/283 (9%) Query: 74 LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRK 127 LI + L+ N+ ++ + R G + + + + Sbjct: 10 LIDVFLDDLWSSKGLSDNTLSAYRTDLRHFDRYQGQQGVTLLAVSQADVRAYLAFRVEQD 69 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +S+ + L+S+R + + V+ + + +P VE PK ++ + + S + Sbjct: 70 FARTSSARLLSSLRRFYTYLVQTKQILADPMALVESPKLTRHLPDSLSESQVDRLLSEPN 129 Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-------------G 230 + + E L +GLR S+ ++ + ++ Sbjct: 130 VEDAVECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVRIVGKGGKERLVPLGELAI 189 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHG 288 T + + +LL F K A +AG+ S H Sbjct: 190 TEVENYMKFARQELLGNKQSDVVFPSKRGQMM--TRQTFWHRIKLYALRAGIETALSPHT 247 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +R AT + GA + G + + YT A R RL Sbjct: 248 LRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVA-RARL 289 >gi|169797492|ref|YP_001715285.1| site-specific tyrosine recombinase [Acinetobacter baumannii AYE] gi|213155694|ref|YP_002317739.1| tyrosine recombinase XerD [Acinetobacter baumannii AB0057] gi|215484928|ref|YP_002327167.1| tyrosine recombinase XerD [Acinetobacter baumannii AB307-0294] gi|260556384|ref|ZP_05828603.1| tyrosine recombinase XerD [Acinetobacter baumannii ATCC 19606] gi|294838164|ref|ZP_06782847.1| site-specific tyrosine recombinase [Acinetobacter sp. 6013113] gi|294857848|ref|ZP_06795617.1| site-specific tyrosine recombinase [Acinetobacter sp. 6013150] gi|301346533|ref|ZP_07227274.1| site-specific tyrosine recombinase [Acinetobacter baumannii AB056] gi|301512500|ref|ZP_07237737.1| site-specific tyrosine recombinase [Acinetobacter baumannii AB058] gi|301594843|ref|ZP_07239851.1| site-specific tyrosine recombinase [Acinetobacter baumannii AB059] gi|169150419|emb|CAM88316.1| site-specific tyrosine recombinase [Acinetobacter baumannii AYE] gi|213054854|gb|ACJ39756.1| tyrosine recombinase XerD [Acinetobacter baumannii AB0057] gi|213986144|gb|ACJ56443.1| tyrosine recombinase XerD [Acinetobacter baumannii AB307-0294] gi|260410439|gb|EEX03738.1| tyrosine recombinase XerD [Acinetobacter baumannii ATCC 19606] Length = 306 Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats. Identities = 45/275 (16%), Positives = 87/275 (31%), Gaps = 19/275 (6%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130 + +R +++ ++R ++ S Q T+ I + +P Sbjct: 20 FLQGFRDYLVAQTVSPHTRNAYLSDLIQCSELHKKNRLPDWTSDDISDVLIELTKVGKSP 79 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-- 188 S + L+++R +K+ Q+ + NP + PK + ++ED++ Sbjct: 80 RSIARCLSALRQFYKFLREQKLRSDNPVATHHSPKIGRALPKDLSEEDVEALIQAPDITT 139 Query: 189 --GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLL 245 G + R FE L GLR S+ ++ + ++ V L + Sbjct: 140 ALGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGYLRITGKGNKERLVPLGQYACDWV 199 Query: 246 AMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 M+ F K A +A + S H +R A Sbjct: 200 ERYLNEARPQLYKSSTDYLFLTQHGGIMSRQNFWYAIKRYALQANIQAELSPHTLRHAFA 259 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 T + GA + G + + YT A Sbjct: 260 THLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR 294 >gi|134301363|ref|YP_001121331.1| tyrosine recombinase/integrase XerD [Francisella tularensis subsp. tularensis WY96-3418] gi|187931093|ref|YP_001891077.1| tyrosine recombinase XerD [Francisella tularensis subsp. mediasiatica FSC147] gi|134049140|gb|ABO46211.1| tyrosine recombinase/integrase XerD [Francisella tularensis subsp. tularensis WY96-3418] gi|187712002|gb|ACD30299.1| tyrosine recombinase XerD [Francisella tularensis subsp. mediasiatica FSC147] Length = 292 Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats. Identities = 43/280 (15%), Positives = 96/280 (34%), Gaps = 25/280 (8%) Query: 71 LKWLIS-EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--- 126 + + + + L+ N+ S+ + + D + + + + + R Sbjct: 5 VDAFLDNLWLEH----GLSQNTISSYRTDLKFLQNYFAKTDLISLDFEQLYAFISYRSKN 60 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 ++ S + ++++R + W + NP + PK + + T+ D+++ Sbjct: 61 GYSSHSNARMISTLRKFYAWLISTGQTNNNPTAKLTLPKLAKKLPKDMTETDVERLLQAP 120 Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGF 241 G + + E + +GLR S+ + + NI K V + + Sbjct: 121 DMTEDVGIRDKAMLELMYATGLRVSELVGLNIDDIDINIGVIQVMGKGSKERIVPIGEYA 180 Query: 242 MKLLAMTP----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289 ++ L ++ FI+ +++ F K A AG+ + S H + Sbjct: 181 LEYLQKYFAEARRSLSKNFKEKAVFISKHAKRITRQSFWHRIKNYALIAGINTDISPHTL 240 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + GA + G V YT + Sbjct: 241 RHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNR 280 >gi|188026224|ref|ZP_02961334.2| hypothetical protein PROSTU_03358 [Providencia stuartii ATCC 25827] gi|188022113|gb|EDU60153.1| hypothetical protein PROSTU_03358 [Providencia stuartii ATCC 25827] Length = 307 Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats. Identities = 45/287 (15%), Positives = 94/287 (32%), Gaps = 25/287 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVESRK 127 LI ++ + LA N+ S+ + + I + + Sbjct: 16 LIEQFLDTIWLEQDLAENTLASYRLDLQLLDKWLEANQLDLESVQSIDLQSFLAERIEGG 75 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 + +S+ + L++MR LF++ R++ +P + PK + +++ ++ + Sbjct: 76 YKAASSARLLSAMRRLFQYFYREKIRLDDPSAVIAAPKIPQRLPKDLSEQQVEDLLNAPA 135 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 + + E L GLR S+ + I+ + L + + Sbjct: 136 TEDPLELRDKAMLEVLYACGLRVSELVGLTFSDISLRQGVIRVVGKGNKERLIPLGEEAI 195 Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289 + F + KM F K A A ++ S H + Sbjct: 196 YWVEKYLEEGRPDLLNGKASDVLFPSKRGTKMTRQTFWHRIKHYAVIANIDSEALSPHVL 255 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKN 335 R AT + GA + G + + YT A +R+R+ + Sbjct: 256 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRMLHEQ 302 >gi|317132368|ref|YP_004091682.1| integrase family protein [Ethanoligenens harbinense YUAN-3] gi|315470347|gb|ADU26951.1| integrase family protein [Ethanoligenens harbinense YUAN-3] Length = 294 Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats. Identities = 37/268 (13%), Positives = 98/268 (36%), Gaps = 24/268 (8%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTPS-- 131 Y + S++ ++ S++ Q ++ G+ D +T + ++ + Sbjct: 10 AYLRDQ--KSVSASTLQSYQRDLKQFVQYLQQRGNEDPADVTAAELEMYLDVLRGKGRSE 67 Query: 132 -SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFW 186 + +F S+R F++ + + ++ NP L + + K T + Q Sbjct: 68 ATISRFTASVRGFFQYLLLEGIISENPALLLHVERGKRCLPDILTSGEVDLLFAQPVCND 127 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246 +G + + E L +G+R S+ V + + ++ + ++ + + ++ ++ Sbjct: 128 FKGYRDKAMLELLYATGIRVSELIALDVGDINLGLCTLFCRGPEKNRSIPIYNEAVQSIS 187 Query: 247 MTPIGKETFFINNDK----------QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294 + + ++++ F K+ A +AG+ K + H +R A Sbjct: 188 LYLDNARSTLRMLHGEKALFVNAGGRRLSRQGFWKIVKSYAGQAGIQKRITPHTLRHSFA 247 Query: 295 TISADAGATAHELMATYGWKTVDQAETY 322 + GA + G + + Y Sbjct: 248 AHLLENGADLKSIQEMLGHSDISSTQIY 275 >gi|209694155|ref|YP_002262083.1| site-specific tyrosine recombinase XerD [Aliivibrio salmonicida LFI1238] gi|208008106|emb|CAQ78247.1| tyrosine recombinase XerD [Aliivibrio salmonicida LFI1238] Length = 300 Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats. Identities = 40/281 (14%), Positives = 97/281 (34%), Gaps = 24/281 (8%) Query: 73 WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESR 126 LI + + L+ N+ S+ + +++ + + ++ + + Sbjct: 8 ALIERFLDTMWMERGLSENTLSSYRNDLMKLLNWLDENHYKCASISAMGLNEYQAYLVDK 67 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 ++ +S + L+++R F++ R++ +P + PK + ++E + Sbjct: 68 QYKQTSRARMLSALRRFFQYLHREKIRGDDPTALLMSPKLPQRLPKDLSEEQVNDLLEAP 127 Query: 187 SEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 + + R E L +GLR ++ +++L ++ V + + Sbjct: 128 NVDDPLELRDRAMLELLYATGLRVTELVSLTMENLSLRQGVVRVTGKGDKERLVPMGENA 187 Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 + + + F + ++M F K A AG++ S H Sbjct: 188 VYWIQTFLDQGRSTLLGEKSSDVVFPSRRARQMTRQTFWHRIKHYAVIAGIDTDKLSPHV 247 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R AT + GA + G + + YT A Sbjct: 248 LRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER 288 >gi|312794335|ref|YP_004027258.1| integrase family protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181475|gb|ADQ41645.1| integrase family protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 374 Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats. Identities = 50/360 (13%), Positives = 112/360 (31%), Gaps = 47/360 (13%) Query: 17 RHGKIIYYFRK-----GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + GK Y G ++ L AL G + + T Sbjct: 7 KKGKKYYIVVDIGVVNGKRKQKWLGGFDTKAEAEE---ALPGILNIIYQNKNKLLERKTF 63 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE----SR 126 L+ + + +++++ S+ S I GD++ K+T ++ + + Sbjct: 64 GELLDLWLNTVAKNRVSLSTFQSYSSSIALHIKPFLGDYELSKLTPMDLQKYYQHIMTEK 123 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + + A+ + +AV+ + + NP V+ PK++ W +E +++ + Sbjct: 124 GLSSTLALYHHRIIHQALDYAVKMDMLEKNPADYVDPPKKRNYQPSIWDEETIKKTLEIF 183 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-----------------NNIFSIKTQKT 229 E + R+ +Y+G+R + + K + Sbjct: 184 KE-TNIRIPVLLAVYTGMRIGEITALKWDDVNLEQGYITVSKTLMKINGQTYIKEKAENK 242 Query: 230 GTIITVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKA 275 + V + + ++ L + D + + + F+ Sbjct: 243 NSYRIVAISNQVVEELKEWKAKQEKLKKELKELYHDEGFVCTFEDGRVQDPKYITKVFQK 302 Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGI 333 K G+ K H +R A++ G + G TV Y+ D R + Sbjct: 303 TIEKHGLPKIRFHDLRHTHASLLLKHGVDPKHISDRLGHSTVTTTLNIYSHVFDEKRRKV 362 >gi|68248917|ref|YP_248029.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae 86-028NP] gi|68057116|gb|AAX87369.1| Site-specific recombinase XerD [Haemophilus influenzae 86-028NP] Length = 297 Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats. Identities = 42/281 (14%), Positives = 91/281 (32%), Gaps = 24/281 (8%) Query: 73 WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESR 126 LI + L+ N+ S+ + D + + + Sbjct: 5 ALIDLFLNEYWIEKGLSENTVQSYRLDLTALCDWLDKNDLSLETLDAVDLQGFLGERLEK 64 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + +S + L++MR LF++ R++Y +P + PK + + T++ + + Sbjct: 65 GYKATSTARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQVSDLLNTP 124 Query: 187 ----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 + + E L +GLR ++ ++++ ++ V + + Sbjct: 125 DVKVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKGNKERIVPMGEEA 184 Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 + + F + Q+M F K A A ++ S H Sbjct: 185 AYWVRQFMLYGRPVLLNGQSSDVVFPSQRAQQMTRQTFWHRVKHYAILADIDADALSPHV 244 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R AT + GA + G + + YT A Sbjct: 245 LRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKER 285 >gi|238787321|ref|ZP_04631120.1| Tyrosine recombinase xerD [Yersinia frederiksenii ATCC 33641] gi|238724583|gb|EEQ16224.1| Tyrosine recombinase xerD [Yersinia frederiksenii ATCC 33641] Length = 299 Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats. Identities = 46/280 (16%), Positives = 95/280 (33%), Gaps = 24/280 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQI---IRKSGDFDYR--KITTKHIRSGVESRK 127 LI ++ + +LA N+ S+ + + G R + + Sbjct: 8 LIEQFLDALWLERNLAENTLASYRLDLHALSGWLEHHGSDLLRAGSQDLQSFLAERIEGG 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + +S+ + L++MR LF++ R++ +P + PK + ++ + + + Sbjct: 68 YKATSSARLLSAMRRLFQYLYREKLREDDPTALLSSPKLPQRLPKDLSEAQVDALLNSPN 127 Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 + + E L +GLR S+ + + ++ V L + + Sbjct: 128 VDIPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKERLVPLGEEAV 187 Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289 + + F +N Q+M F K A AG++ S H + Sbjct: 188 YWIENYMEHGRPWLINGQSLDVLFPSNRSQQMTRQTFWHRIKHYAILAGIDSERLSPHVL 247 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + GA + G + + YT A Sbjct: 248 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 287 >gi|296104556|ref|YP_003614702.1| site-specific tyrosine recombinase XerD [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059015|gb|ADF63753.1| site-specific tyrosine recombinase XerD [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 298 Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats. Identities = 45/281 (16%), Positives = 94/281 (33%), Gaps = 24/281 (8%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVESR 126 LI ++ + +LA N+ ++ ++ + + Sbjct: 6 ALIEQFLDALWLEKNLAQNTLSAYRRDLTMLVEWLAHRGLSLESAQSDDLQALLGERMEG 65 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + +S+ + L++MR LF+ R++ A +P + PK + ++ +++ Sbjct: 66 GYKATSSARLLSAMRRLFQHLYREKIRADDPSALLASPKLPQRLPKDLSEAQVERLLQSP 125 Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 + + + E L +GLR S+ + + ++ V L + Sbjct: 126 AVDLPLELRDKAMLELLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEA 185 Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 + L + F + Q+M F K AT AG++ S H Sbjct: 186 VYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYATLAGIDSEKLSPHV 245 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R AT + GA + G + + YT A Sbjct: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286 >gi|148655021|ref|YP_001275226.1| phage integrase family protein [Roseiflexus sp. RS-1] gi|254799356|sp|A5URM3|XERC_ROSS1 RecName: Full=Tyrosine recombinase xerC gi|148567131|gb|ABQ89276.1| phage integrase family protein [Roseiflexus sp. RS-1] Length = 313 Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats. Identities = 39/276 (14%), Positives = 97/276 (35%), Gaps = 26/276 (9%) Query: 75 ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSG---DFDYRKITTKHIRSGV---ESRK 127 + + + A +LA N+ ++ + DQ ++R ++ I S + R+ Sbjct: 5 VEAFLRHLADERNLAANTIAAYRTDLDQFCDFVSARNRREWRDVSHDDILSFMLYLRERR 64 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + S+ + + +++ F + V +P ++ PK + R T + + Sbjct: 65 YASSTVARRVAAVKSFFAFLTGSGAVPHDPTERIDSPKVDRDLPRALTPHQVDELLELPL 124 Query: 188 EGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-------- 234 + + E L +G+R S+ + + +++ + Sbjct: 125 RSPTPERIRDKAMLELLYATGMRVSELVALNMTDIDLVHSTVRCTGKNGRVRVLPINGSA 184 Query: 235 -----VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHG 288 + +L + + F+N+ +++ F + K A + G+ + H Sbjct: 185 ATALEEYCDNSRSQLARGSDAPIDALFLNHRGKRLTRQGFWLILKQYAEEMGLGELTPHM 244 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R A +AGA + G ++ + YT Sbjct: 245 LRHSFAVHMLNAGADLRAVQELLGHTSISTTQIYTH 280 >gi|229592394|ref|YP_002874513.1| site-specific tyrosine recombinase XerD [Pseudomonas fluorescens SBW25] gi|229364260|emb|CAY51975.1| integrase/recombinase [Pseudomonas fluorescens SBW25] Length = 298 Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats. Identities = 52/291 (17%), Positives = 106/291 (36%), Gaps = 24/291 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT--TKHIRSGVESR---K 127 LI + + L+ N+R ++ S + + I + I + R Sbjct: 8 LIDRFLDALWLEKGLSDNTRQAYRSDLALFNGWLQEKNLELINAGRELILDHLAWRLEQN 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + P S +FL+ +R +++ +R++ +A++P L VE P+ + ++ D+ + Sbjct: 68 YKPRSTARFLSGVRGFYRYLLREKLIALDPTLQVEMPQLGRPLPKSLSEADVDALLAAPD 127 Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 G + R E L GLR ++ ++ + ++ V + + + Sbjct: 128 LSEAIGQRDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEEAI 187 Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 + F + ++M F K +A AG+ K S H +R Sbjct: 188 VWVERYMRDARGELLGGRPSDVLFPSLRGEQMTRQTFWHRIKHQAKVAGIGKALSPHTLR 247 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 AT + GA + G + + YT A R RL +++ Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQDMHAKHHPR 297 >gi|289209264|ref|YP_003461330.1| tyrosine recombinase XerD [Thioalkalivibrio sp. K90mix] gi|288944895|gb|ADC72594.1| tyrosine recombinase XerD [Thioalkalivibrio sp. K90mix] Length = 301 Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats. Identities = 44/282 (15%), Positives = 91/282 (32%), Gaps = 25/282 (8%) Query: 74 LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKH-- 128 ++ + L+ ++ ++ + + R ++ + + V +R Sbjct: 10 VLDRFLDELWAVEGLSDHTLAAYRRDLEALARWLHGRGVALEAASSADLLAFVSARMQAG 69 Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ----FK 183 P S + L+S+R +++ V Q +P +E P+ ++ + + Sbjct: 70 ARPKSITRALSSIRRFYRYLVHQGEREDDPSAGIESPRAGRPLPDSLSETQVNALLAAPE 129 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ------------KTGT 231 G + R E + +GLR S+ + + ++ + Sbjct: 130 LHTEVGLRDRAMLELMYATGLRVSELVGLEQSEVNSRQGVVRITGKGDKERLVPLGEEAA 189 Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289 L +T F+ + + F K A AG+ S H + Sbjct: 190 HWLARYLREARGALMSGHPPVDTVFVTRRGRGLTRQAFWYRIKHYAQVAGIEVPLSPHTL 249 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 R AT D GA + G ++ + YT A R RL Sbjct: 250 RHAFATHLLDHGADLRVVQMLLGHSSLSTTQIYTHVA-RARL 290 >gi|261342297|ref|ZP_05970155.1| tyrosine recombinase XerD [Enterobacter cancerogenus ATCC 35316] gi|288315638|gb|EFC54576.1| tyrosine recombinase XerD [Enterobacter cancerogenus ATCC 35316] Length = 298 Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats. Identities = 45/281 (16%), Positives = 98/281 (34%), Gaps = 24/281 (8%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESR--- 126 L+ ++ + +LA N+ ++ ++ + +++ + R Sbjct: 6 ALVEQFLDALWLEKNLAENTLSAYRRDLTMLVEWLSRRKLSLETVQHDDLQALLGERVDG 65 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + +S+ + L++MR LF+ R++ A +P + PK + ++ +++ Sbjct: 66 GYKATSSARLLSAMRRLFQHLFREKIRADDPSALLASPKLPQRLPKDLSEAQVERLLQSP 125 Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 + + + E L +GLR S+ + + ++ V L + Sbjct: 126 AVDLPLELRDKAMLELLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEA 185 Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 + L + F + Q+M F K AT AG++ S H Sbjct: 186 VYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYATLAGIDSEKLSPHV 245 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R AT + GA + G + + YT A Sbjct: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286 >gi|254467807|ref|ZP_05081213.1| tyrosine recombinase XerC [beta proteobacterium KB13] gi|207086617|gb|EDZ63900.1| tyrosine recombinase XerC [beta proteobacterium KB13] Length = 295 Score = 140 bits (352), Expect = 4e-31, Method: Composition-based stats. Identities = 40/271 (14%), Positives = 94/271 (34%), Gaps = 20/271 (7%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP- 130 L+ ++ + L+ + ++++ +++I D + ++ IR + + Sbjct: 4 ELLDQFLNYIKFEKRLSELTIKNYQNDINRLI-LINDKKLTEFNSEDIRLSLSKLHASGL 62 Query: 131 --SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---SF 185 S + L+S R F + + + + +P ++ PK + + + + + + Sbjct: 63 SGKSLSRILSSWRSCFLFFNKSQLMKYDPTSGIKAPKSQKKLPQTLSIDQVFNLINIPQT 122 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKL 244 ++ R EF SGLR S+ + + N + K V L ++ Sbjct: 123 NFIDTRDRAILEFFYSSGLRLSELVNIHLSDIDTNEQTLKVLGKGNKFRIVPLGRKAIEA 182 Query: 245 LAMTPIGKE---------TFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFS 293 L + + + F+N +K+ A K A K + H +R Sbjct: 183 LDLWILQRNKLNKLVDDEFLFLNQQGKKLTARAIQYRLKFWAQKNNIPENIHPHLLRHSF 242 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324 A+ + + G + + YT Sbjct: 243 ASHVLQSSQDLRAVQELLGHSNISTTQIYTH 273 >gi|306812204|ref|ZP_07446402.1| site-specific tyrosine recombinase XerD [Escherichia coli NC101] gi|305854242|gb|EFM54680.1| site-specific tyrosine recombinase XerD [Escherichia coli NC101] Length = 298 Score = 140 bits (352), Expect = 4e-31, Method: Composition-based stats. Identities = 42/279 (15%), Positives = 94/279 (33%), Gaps = 24/279 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRKH 128 I ++ + +LA N+ ++ ++ T + + + + Sbjct: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +S+ + L+++R LF++ R+++ +P + PK + ++ +++ Sbjct: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 Query: 189 G----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243 + + E L +GLR S+ + + ++ V L + + Sbjct: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLPQGVVRVIGKGNKERLVPLGEEAVY 187 Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290 L + F + Q+M F K A AG++ S H +R Sbjct: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + GA + G + + YT A Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286 >gi|241667835|ref|ZP_04755413.1| site-specific recombinase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876378|ref|ZP_05249088.1| site-specific recombinase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842399|gb|EET20813.1| site-specific recombinase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 292 Score = 140 bits (352), Expect = 4e-31, Method: Composition-based stats. Identities = 41/280 (14%), Positives = 94/280 (33%), Gaps = 25/280 (8%) Query: 71 LKWLIS-EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--- 126 + + + + L+ N+ S+ + + + + + + + + R Sbjct: 5 VDAFLDNLWLEH----GLSQNTISSYRTDLKFLQSYFSQVELINLDFEQLYAFISYRSKN 60 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 ++ S + ++++R + W + NP + PK + T+ D+++ Sbjct: 61 GYSSRSNARMISTLRKFYNWLISTGQATTNPTTKLTLPKLAKRLPKDMTEVDVERLLQAP 120 Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGF 241 G + + E + +GLR S+ + N K V + + Sbjct: 121 DLTDDIGIRDKAMLELMYATGLRVSELVGLNTNDIDLNVGVIQVMGKGSKERIVPIGEYA 180 Query: 242 MKLLAMTP----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289 ++ L ++ FI+ +++ F K+ A AG+ + S H + Sbjct: 181 LEYLHKYFEESRESLAKNFKEKAVFISKHSKRITRQSFWHRIKSYALIAGINTDISPHTL 240 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + GA + G V YT + Sbjct: 241 RHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNR 280 >gi|269123216|ref|YP_003305793.1| integrase family protein [Streptobacillus moniliformis DSM 12112] gi|268314542|gb|ACZ00916.1| integrase family protein [Streptobacillus moniliformis DSM 12112] Length = 299 Score = 140 bits (352), Expect = 4e-31, Method: Composition-based stats. Identities = 49/280 (17%), Positives = 98/280 (35%), Gaps = 25/280 (8%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKIT----TKHIRSG 122 L+ ++ + + N+ S++ +Q I G D+ K+ I Sbjct: 2 DKLLEKFLYYQDVVLNKSFNTVKSYKKDLEQFIEYLKNNEGIEDFNKVEIFTFRSFIAYL 61 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + S + L+++R FK+ + +Y+ N + + PK + TKED+ + Sbjct: 62 NVELQVNKRSINRKLSAIRTFFKYLLENDYIIENKAVYISTPKFEKPLPNFLTKEDIDKL 121 Query: 183 KSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVEL 237 +S G + R E L SGLR + + ++ Sbjct: 122 RSVIKLEKITGLRDRAIIELLYSSGLRSMELLDLTEYTIDLKNMEVRVIGKGNKERISFF 181 Query: 238 PDGFMKLLAMTPIGKETFFINNDK---------QKMNATQFSIWFKAKATKAGVNK--SA 286 + K ++ K+ + N +K K+++ + KAG+NK + Sbjct: 182 SNNAQKYISEYIERKKEEYKNYNKDAIFVNKDGNKLDSRSLRRLITKYSIKAGINKEVTP 241 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 H R AT + G + G ++ + YT + Sbjct: 242 HIFRHSFATELLNQGVDIRFVQELLGHSSIATTQFYTHIS 281 >gi|288933626|ref|YP_003437685.1| tyrosine recombinase XerD [Klebsiella variicola At-22] gi|288888355|gb|ADC56673.1| tyrosine recombinase XerD [Klebsiella variicola At-22] Length = 298 Score = 140 bits (352), Expect = 4e-31, Method: Composition-based stats. Identities = 39/279 (13%), Positives = 93/279 (33%), Gaps = 24/279 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR---KH 128 I ++ + +LA N+ ++ ++ + + +++ + R + Sbjct: 8 IEQFLDALWLERNLAENTLSAYRRDLTMLVEWLHHRGLSLASVGSDDLQALLAERQTGGY 67 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--- 185 +S + ++++R F+ R++ +P + PK + ++ +++ Sbjct: 68 KATSTARLISAVRRFFQHLYREKIRPDDPSALLASPKLPQRLPKDLSEAQVERLLQAPLV 127 Query: 186 -WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243 + + E L +GLR S+ + + ++ V L + + Sbjct: 128 EQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVLRVIGKGNKERLVPLGEEAVM 187 Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290 + + F + Q+M F K A AG++ S H +R Sbjct: 188 WVENYLEYGRPWLLNGVASDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSAKLSPHVLR 247 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + GA + G + + YT A Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286 >gi|283788448|ref|YP_003368313.1| tyrosine recombinase [Citrobacter rodentium ICC168] gi|282951902|emb|CBG91620.1| tyrosine recombinase [Citrobacter rodentium ICC168] Length = 298 Score = 140 bits (352), Expect = 4e-31, Method: Composition-based stats. Identities = 42/279 (15%), Positives = 92/279 (32%), Gaps = 24/279 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRKH 128 I ++ + +LA N+ ++ ++ T + + + + Sbjct: 8 IEQFLDALWLEKNLAENTLSAYRRDLTMLVEWLAHRKASLETAQSEDLQALLAERMDGGY 67 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +S + L+++R LF+ R++ +P ++ PK + ++ +++ Sbjct: 68 KATSTARLLSAVRRLFQHLYREKIRPDDPSAALASPKLPQRLPKDLSEAQVERLLQAPVV 127 Query: 189 G----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243 + + E L +GLR S+ + + ++ V L + + Sbjct: 128 DQPLELRDKAMLEILYATGLRVSELVGLTMSDVSLRQGVVRVIGKGNKERLVPLGEEAVY 187 Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290 L + F + Q+M F K A AG++ S H +R Sbjct: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + GA + G + + YT A Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286 >gi|147918869|ref|YP_687405.1| integrase [uncultured methanogenic archaeon RC-I] gi|110622801|emb|CAJ38079.1| integrase [uncultured methanogenic archaeon RC-I] Length = 278 Score = 140 bits (352), Expect = 4e-31, Method: Composition-based stats. Identities = 31/257 (12%), Positives = 85/257 (33%), Gaps = 9/257 (3%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG---VESRKHT 129 ++ + S + + + ++ + +G + + +R + + + Sbjct: 8 DYVAVFIDEKRLSS-SPGTIRQYGMILNRFYKYTGKQPEMVVRPEIVRYLNYLMFEKHLS 66 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 ++ L+ ++ + + + YV+ NP + K + T +M Sbjct: 67 KTTVANVLSVLKSFYSFMLDNGYVSSNPTRGINNIKLDKKAPVYLTVSEMNDLLDTA-ID 125 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249 ++ R+ L +G+R S+ + + + +IK + ++ Sbjct: 126 TRDRIIVRLLYATGVRVSELVNIRKKDIDFDRCTIKVFG--KGAKERIVLVPETVVKEMY 183 Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHEL 307 + ++ + K A +A +NK + H +R AT G + Sbjct: 184 DYAASLSNDDRLFNLTPRTVQRDIKQLARRAKINKNVTPHKLRHSFATHMLQNGGNVVAI 243 Query: 308 MATYGWKTVDQAETYTK 324 G +++ + YT Sbjct: 244 QKLLGHSSLNTTQIYTH 260 >gi|212638838|ref|YP_002315358.1| site-specific tyrosine recombinase XerD [Anoxybacillus flavithermus WK1] gi|212560318|gb|ACJ33373.1| Site-specific recombinase XerD [Anoxybacillus flavithermus WK1] Length = 300 Score = 140 bits (352), Expect = 4e-31, Method: Composition-based stats. Identities = 40/271 (14%), Positives = 97/271 (35%), Gaps = 26/271 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIR---SGVESRKHTPSSAIQFL 137 +LA N+ +S+E + ++ + +T HI ++ + +P + + L Sbjct: 18 RNLAHNTIVSYERDLKKYVQYLQKVEQLCHWNDVTRFHIMQFLKFLKEKGSSPKTIARHL 77 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPR 193 S+R ++ +R++ V +P + +E P+ + + +++ + + + + Sbjct: 78 ASVRSFHQFLLREKAVDQDPTVHIETPQLPRKLPNVLSMAEVEALLEAPKQNTPFSIRDK 137 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252 E L +G+R S+ + + + + I+ V + + L Sbjct: 138 AMLELLYATGIRVSELIQLNISDVHLTMGFIRCYGKGRKERIVPIGKMATEALKRYIEQG 197 Query: 253 ETF------------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298 F+N+ +++ K A +A + K + H +R AT Sbjct: 198 RPELLQRKKGTTDALFLNHHGERLTRQGCWKILKRLAQEANIQKQLTPHTLRHSFATHLL 257 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRI 329 + GA + G + + YT Sbjct: 258 ENGADLRAVQEMLGHADISTTQIYTHVTKTR 288 >gi|78484996|ref|YP_390921.1| tyrosine recombinase XerD [Thiomicrospira crunogena XCL-2] gi|78363282|gb|ABB41247.1| tyrosine recombinase XerD subunit [Thiomicrospira crunogena XCL-2] Length = 297 Score = 140 bits (352), Expect = 4e-31, Method: Composition-based stats. Identities = 40/274 (14%), Positives = 92/274 (33%), Gaps = 23/274 (8%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSA 133 +Y + L+ N+ +++ + G D + + + + + PSS Sbjct: 14 QYLRLNE--GLSDNTLQAYQRDLKKTQLALGKTDLSQASREQLEDYLFQLHVDQVNPSSI 71 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEG 189 + L++++ + + + + +P ++ P+ + ++ ++ + G Sbjct: 72 ARCLSALKRFYLFLILHNRIQQDPAAQLKAPQLIKKIPSVISEAQVEALLNAPDLTTPLG 131 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLAMT 248 + + E + SGLR S+ + L + T K V + ++ + Sbjct: 132 VRDKAILELMYASGLRVSELVNLPYEQLNLSAGLVQVTGKGNKERIVPIGQMAIEAIEAY 191 Query: 249 -----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSAT 295 T F++ + M K A +A + S HG+R AT Sbjct: 192 LKSARPALVGKQKWVSTLFVSRIGRTMTRQTLWHRIKNLALQADIRSQLSPHGLRHAFAT 251 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + GA + G + + YT A Sbjct: 252 HLINHGADLRTVQLLLGHSDLSTTQIYTHVAKER 285 >gi|257867648|ref|ZP_05647301.1| phage integrase [Enterococcus casseliflavus EC30] gi|257873977|ref|ZP_05653630.1| phage integrase [Enterococcus casseliflavus EC10] gi|257801731|gb|EEV30634.1| phage integrase [Enterococcus casseliflavus EC30] gi|257808141|gb|EEV36963.1| phage integrase [Enterococcus casseliflavus EC10] Length = 296 Score = 140 bits (352), Expect = 4e-31, Method: Composition-based stats. Identities = 43/269 (15%), Positives = 96/269 (35%), Gaps = 24/269 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRKHTP---SSAIQFLT 138 L+ N+R S++ Q + + I + S ++S + ++ I+ ++ Sbjct: 16 RGLSQNTRASYQRDLQQYLAFLQKKQVTQWQQIDRVIVLSFLQSLQDAGKSSATVIRMVS 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFWSEGSQPRL 194 S+R ++ ++ +P ++ PK++ + + ++ ++ + G + R Sbjct: 76 SLRRFHQYLRQERLTDHDPMQHIDSPKKQQKLPDTLSLQEVERLIETPDTRAVLGIRDRA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVE-----------LPDGFM 242 E + +GLR S+ + L ++ T K V Sbjct: 136 ILEVMYATGLRVSELIGLKLNDLHLSMGLLQTTGKGDKERIVPLGDLAIQWIETYLSDAR 195 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 L + F+NN +++ KA +AG+ K + H +R AT + Sbjct: 196 PYLTRKTPDESHLFVNNHGTQLSRQGIWKNLKALVRQAGITKNVTPHTLRHSFATHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329 GA + G + + YT + Sbjct: 256 GADLRTVQELLGHADISTTQIYTHITKKR 284 >gi|251791941|ref|YP_003006661.1| site-specific tyrosine recombinase XerD [Aggregatibacter aphrophilus NJ8700] gi|247533328|gb|ACS96574.1| tyrosine recombinase XerD [Aggregatibacter aphrophilus NJ8700] Length = 297 Score = 140 bits (352), Expect = 4e-31, Method: Composition-based stats. Identities = 41/281 (14%), Positives = 90/281 (32%), Gaps = 24/281 (8%) Query: 73 WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI-----RSGVESR 126 L+ + L+ N+ S+ + +T + + Sbjct: 5 ALMDLFINEYWIEKGLSPNTVQSYRLDLTALCDWLEVHKLSLLTLDAVDLQTFLGERLQQ 64 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + +S + L++MR LF++ +++Y +P + PK + + T++ + + Sbjct: 65 GYKATSTARLLSAMRKLFQYLYKEKYRTDDPSAVLSSPKLPSRLPKYLTEQQVTDLLNVQ 124 Query: 187 ----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 + + E L +GLR ++ G + N ++ V + + Sbjct: 125 SLEQPVELRDKAMLELLYATGLRVTELVTLGTDSINLNQGVVRVIGKGNKERIVPMGEEA 184 Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 + + F + +M F K A +A ++ S H Sbjct: 185 THWIKQYILFVRPILLDGQSSDVLFPSRRGTQMTRQTFWHRIKHYAVRAEIDSDMLSPHV 244 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R AT + GA + G + + YT A Sbjct: 245 LRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKER 285 >gi|163941832|ref|YP_001646716.1| site-specific tyrosine recombinase XerD [Bacillus weihenstephanensis KBAB4] gi|229013300|ref|ZP_04170441.1| Tyrosine recombinase xerD [Bacillus mycoides DSM 2048] gi|229061763|ref|ZP_04199096.1| Tyrosine recombinase xerD [Bacillus cereus AH603] gi|163864029|gb|ABY45088.1| tyrosine recombinase XerD [Bacillus weihenstephanensis KBAB4] gi|228717509|gb|EEL69173.1| Tyrosine recombinase xerD [Bacillus cereus AH603] gi|228748067|gb|EEL97931.1| Tyrosine recombinase xerD [Bacillus mycoides DSM 2048] Length = 296 Score = 140 bits (352), Expect = 4e-31, Method: Composition-based stats. Identities = 38/269 (14%), Positives = 98/269 (36%), Gaps = 24/269 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRK---HTPSSAIQFL 137 LA N+ +S+E ++ + + ++T HI + ++ K + + + + Sbjct: 16 KGLAKNTVVSYERDLKSYVKYLQNVEQTKTFHEVTRLHIVNFLQHLKENGKSSKTLARHI 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193 S+R ++ +R+ V +P + +E P+ + + + + ++++ G + + Sbjct: 76 ASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSIDEVEALLQTPKTASAFGIRDK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252 E L +GLR S+ ++ + + ++ + L + + Sbjct: 136 AMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNKERIIPLGSLATEAIQKYIEKG 195 Query: 253 ETFFI----------NNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300 + N+ +++ F K A +A + + H +R AT + Sbjct: 196 RRELMGKKAVDALFLNHHGNRLSRQGFWKILKRLAKEANIAKELTPHTLRHSFATHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329 GA + G + + YT + Sbjct: 256 GADLRAVQEMLGHADISTTQIYTHVSKTR 284 >gi|242279423|ref|YP_002991552.1| tyrosine recombinase XerD [Desulfovibrio salexigens DSM 2638] gi|242122317|gb|ACS80013.1| tyrosine recombinase XerD [Desulfovibrio salexigens DSM 2638] Length = 304 Score = 140 bits (352), Expect = 4e-31, Method: Composition-based stats. Identities = 47/273 (17%), Positives = 85/273 (31%), Gaps = 21/273 (7%) Query: 73 WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHT 129 I Y + L+ NS + S + D T++ + + + Sbjct: 13 QWIDRYLEYLLIERGLSENSLSGYLSDLESFQSFLEDRSAKIEDATSQTLLLYLTYLRSK 72 Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-- 184 +S + L+S+R F + + ++ +P +E PK + + E++ + + Sbjct: 73 ALKSTSLARHLSSLRGFFAFCTSRGFIKEDPATLLENPKLPRKIPEFLSPEEIGRMLALP 132 Query: 185 --FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGF 241 G + R E L +G+R S+ ++ I K V + Sbjct: 133 KLTEKLGFRDRTMLELLYAAGMRVSELINLNIEDFDPQTGVLIIFGKGSKERLVPIHYVA 192 Query: 242 MKLLAMTPIGKETFFINNDKQKM--------NATQFSIWFKAKATKAGVNKS--AHGVRK 291 L F K K A +AG+ +S H R Sbjct: 193 QNFLNQYIKDWRPAFNPKVKNIFLNRSGKGLTRQGVWKLIKKFALEAGIKRSISPHTFRH 252 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324 AT D GA + G ++ E YT Sbjct: 253 SFATHLLDGGADLRTVQLLLGHSDINATEIYTH 285 >gi|322419214|ref|YP_004198437.1| tyrosine recombinase XerD [Geobacter sp. M18] gi|320125601|gb|ADW13161.1| tyrosine recombinase XerD [Geobacter sp. M18] Length = 292 Score = 140 bits (352), Expect = 4e-31, Method: Composition-based stats. Identities = 45/267 (16%), Positives = 90/267 (33%), Gaps = 21/267 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMR 141 A N+ ++ + + G+ + +I + + K P S + L+++R Sbjct: 16 RGAAANTVAAYSRDLTRYLAYLGEREPDQIRPSDVTGYLGKLKGEGIAPRSRARALSALR 75 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----QFKSFWSEGSQPRLAFE 197 +L ++ VR+ + +NP VE PK + + +++ + + + E Sbjct: 76 MLHRFLVREGHCEVNPTAIVEAPKGLLKLPTVLSSREVEALLASPLDTGAIELRDKAMLE 135 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMTPIGKETFF 256 L +GLR S+ + + K + + + + + Sbjct: 136 LLYATGLRVSELVGLKTGDVNIAAGYLMTIGKGDKERLIPMGESACRAVGEYLEKARQEL 195 Query: 257 INNDKQK----------MNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATA 304 + M F K +A +AGV S H +R AT + GA Sbjct: 196 LKQKSSPLLFISRLGEGMTRQAFWNIIKKRALQAGVRSGISPHTLRHSFATHLLENGADL 255 Query: 305 HELMATYGWKTVDQAETYTKGADRIRL 331 + G + + YT R RL Sbjct: 256 RSVQIMLGHADLSTTQIYTHVT-RERL 281 >gi|22127152|ref|NP_670575.1| site-specific tyrosine recombinase XerD [Yersinia pestis KIM 10] gi|45443323|ref|NP_994862.1| site-specific tyrosine recombinase XerD [Yersinia pestis biovar Microtus str. 91001] gi|51597478|ref|YP_071669.1| site-specific tyrosine recombinase XerD [Yersinia pseudotuberculosis IP 32953] gi|108806374|ref|YP_650290.1| site-specific tyrosine recombinase XerD [Yersinia pestis Antiqua] gi|108813251|ref|YP_649018.1| site-specific tyrosine recombinase XerD [Yersinia pestis Nepal516] gi|145597930|ref|YP_001162006.1| site-specific tyrosine recombinase XerD [Yersinia pestis Pestoides F] gi|150260097|ref|ZP_01916825.1| integrase/recombinase [Yersinia pestis CA88-4125] gi|153948372|ref|YP_001399863.1| site-specific tyrosine recombinase XerD [Yersinia pseudotuberculosis IP 31758] gi|162418404|ref|YP_001608154.1| site-specific tyrosine recombinase XerD [Yersinia pestis Angola] gi|165924857|ref|ZP_02220689.1| tyrosine recombinase XerD [Yersinia pestis biovar Orientalis str. F1991016] gi|165937373|ref|ZP_02225937.1| tyrosine recombinase XerD [Yersinia pestis biovar Orientalis str. IP275] gi|166010314|ref|ZP_02231212.1| tyrosine recombinase XerD [Yersinia pestis biovar Antiqua str. E1979001] gi|166212682|ref|ZP_02238717.1| tyrosine recombinase XerD [Yersinia pestis biovar Antiqua str. B42003004] gi|167399752|ref|ZP_02305270.1| tyrosine recombinase XerD [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167418760|ref|ZP_02310513.1| tyrosine recombinase XerD [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425367|ref|ZP_02317120.1| tyrosine recombinase XerD [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170023169|ref|YP_001719674.1| site-specific tyrosine recombinase XerD [Yersinia pseudotuberculosis YPIII] gi|186896598|ref|YP_001873710.1| site-specific tyrosine recombinase XerD [Yersinia pseudotuberculosis PB1/+] gi|218928065|ref|YP_002345940.1| site-specific tyrosine recombinase XerD [Yersinia pestis CO92] gi|229837578|ref|ZP_04457740.1| site-specific tyrosine recombinase [Yersinia pestis Pestoides A] gi|229840801|ref|ZP_04460960.1| site-specific tyrosine recombinase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842640|ref|ZP_04462795.1| site-specific tyrosine recombinase [Yersinia pestis biovar Orientalis str. India 195] gi|229903707|ref|ZP_04518820.1| site-specific tyrosine recombinase [Yersinia pestis Nepal516] gi|270487486|ref|ZP_06204560.1| tyrosine recombinase XerD [Yersinia pestis KIM D27] gi|294502941|ref|YP_003567003.1| tyrosine recombinase [Yersinia pestis Z176003] gi|34222946|sp|Q8ZHK1|XERD_YERPE RecName: Full=Tyrosine recombinase xerD gi|21960213|gb|AAM86826.1|AE013928_11 site-specific recombinase [Yersinia pestis KIM 10] gi|45438192|gb|AAS63739.1| integrase/recombinase [Yersinia pestis biovar Microtus str. 91001] gi|51590760|emb|CAH22405.1| Probable site-specific integrase/recombinase [Yersinia pseudotuberculosis IP 32953] gi|108776899|gb|ABG19418.1| tyrosine recombinase XerD subunit [Yersinia pestis Nepal516] gi|108778287|gb|ABG12345.1| tyrosine recombinase XerD subunit [Yersinia pestis Antiqua] gi|115346676|emb|CAL19559.1| integrase/recombinase [Yersinia pestis CO92] gi|145209626|gb|ABP39033.1| tyrosine recombinase XerD subunit [Yersinia pestis Pestoides F] gi|149289505|gb|EDM39582.1| integrase/recombinase [Yersinia pestis CA88-4125] gi|152959867|gb|ABS47328.1| tyrosine recombinase XerD [Yersinia pseudotuberculosis IP 31758] gi|162351219|gb|ABX85167.1| tyrosine recombinase XerD [Yersinia pestis Angola] gi|165914847|gb|EDR33460.1| tyrosine recombinase XerD [Yersinia pestis biovar Orientalis str. IP275] gi|165923057|gb|EDR40208.1| tyrosine recombinase XerD [Yersinia pestis biovar Orientalis str. F1991016] gi|165990800|gb|EDR43101.1| tyrosine recombinase XerD [Yersinia pestis biovar Antiqua str. E1979001] gi|166205974|gb|EDR50454.1| tyrosine recombinase XerD [Yersinia pestis biovar Antiqua str. B42003004] gi|166962754|gb|EDR58775.1| tyrosine recombinase XerD [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167050460|gb|EDR61868.1| tyrosine recombinase XerD [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055767|gb|EDR65551.1| tyrosine recombinase XerD [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169749703|gb|ACA67221.1| tyrosine recombinase XerD [Yersinia pseudotuberculosis YPIII] gi|186699624|gb|ACC90253.1| tyrosine recombinase XerD [Yersinia pseudotuberculosis PB1/+] gi|229679477|gb|EEO75580.1| site-specific tyrosine recombinase [Yersinia pestis Nepal516] gi|229690950|gb|EEO83004.1| site-specific tyrosine recombinase [Yersinia pestis biovar Orientalis str. India 195] gi|229697167|gb|EEO87214.1| site-specific tyrosine recombinase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229704266|gb|EEO91277.1| site-specific tyrosine recombinase [Yersinia pestis Pestoides A] gi|262360976|gb|ACY57697.1| tyrosine recombinase [Yersinia pestis D106004] gi|262364916|gb|ACY61473.1| tyrosine recombinase [Yersinia pestis D182038] gi|270335990|gb|EFA46767.1| tyrosine recombinase XerD [Yersinia pestis KIM D27] gi|294353400|gb|ADE63741.1| tyrosine recombinase [Yersinia pestis Z176003] gi|320014032|gb|ADV97603.1| site-specific tyrosine recombinase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 299 Score = 140 bits (352), Expect = 4e-31, Method: Composition-based stats. Identities = 47/280 (16%), Positives = 101/280 (36%), Gaps = 24/280 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESR---K 127 LI ++ + +LA N+ S+ ++ + D + + + ++S + R Sbjct: 8 LIEQFLDALWLERNLAENTLASYRLDLHALVGWLTHHNSDLLRASPQDLQSFLAERIEGG 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + +S+ + L++MR LF++ R++ +P + PK + ++ + + + Sbjct: 68 YKATSSARLLSAMRRLFQYLYREKLREDDPTALLSSPKLPQRLPKDLSEAQVDALLNSPN 127 Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 + + E L +GLR S+ + + ++ V L + + Sbjct: 128 VDIPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKERLVPLGEEAV 187 Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289 + + F +N Q+M F K A AG++ S H + Sbjct: 188 YWIENYMEHGRPWLVNGASLDVLFPSNRSQQMTRQTFWHRIKHYAILAGIDSERLSPHVL 247 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + GA + G + + YT A Sbjct: 248 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 287 >gi|311278186|ref|YP_003940417.1| tyrosine recombinase XerD [Enterobacter cloacae SCF1] gi|308747381|gb|ADO47133.1| tyrosine recombinase XerD [Enterobacter cloacae SCF1] Length = 298 Score = 139 bits (351), Expect = 4e-31, Method: Composition-based stats. Identities = 43/279 (15%), Positives = 91/279 (32%), Gaps = 24/279 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVESRKH 128 I ++ + +LA N+ ++ + T + ++ + + Sbjct: 8 IEQFLDALWLEKNLAENTLSAYRRDLTMVAAWLQHRGLSLETAQPGDLQNLLAERVDGGY 67 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +S+ + L++MR LF+ R++ +P + PK + ++ + + Sbjct: 68 KATSSARLLSAMRRLFQHLYREKIRPDDPSAQLASPKLPQRLPKDLSEAQVDRLLQAPLV 127 Query: 189 G----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243 + + E L +GLR S+ + + ++ V L + + Sbjct: 128 DQPLELRDKAMLEVLYATGLRVSELVGLSMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187 Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290 L + F + Q+M F K A AG++ S H +R Sbjct: 188 WLENYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYARLAGIDSEKLSPHVLR 247 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + GA + G + + YT A Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286 >gi|319896642|ref|YP_004134835.1| site-specific recombinase xerd [Haemophilus influenzae F3031] gi|317432144|emb|CBY80495.1| Site-specific recombinase XerD [Haemophilus influenzae F3031] Length = 297 Score = 139 bits (351), Expect = 4e-31, Method: Composition-based stats. Identities = 41/281 (14%), Positives = 90/281 (32%), Gaps = 24/281 (8%) Query: 73 WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESR 126 LI + L+ N+ S+ + + + + Sbjct: 5 ALIDLFLNEYWIEKGLSENTVQSYRLDLTALCDWLDKNGLSLETLDAVDLQGFLGERLEK 64 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + +S + L++MR LF++ R++Y +P + PK + + T++ + + Sbjct: 65 GYKATSTARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQVSDLLNTP 124 Query: 187 ----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 + + E L +GLR ++ ++++ ++ V + + Sbjct: 125 DVEVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKGNKERIVPMGEEA 184 Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 + + F + Q+M F K A A ++ S H Sbjct: 185 AYWVRQFMLYGRPVLLNGQSSDVVFPSQRTQQMTRQTFWHRVKHYAILADIDADALSPHV 244 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R AT + GA + G + + YT A Sbjct: 245 LRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKER 285 >gi|257876556|ref|ZP_05656209.1| phage integrase [Enterococcus casseliflavus EC20] gi|257810722|gb|EEV39542.1| phage integrase [Enterococcus casseliflavus EC20] Length = 296 Score = 139 bits (351), Expect = 4e-31, Method: Composition-based stats. Identities = 43/269 (15%), Positives = 96/269 (35%), Gaps = 24/269 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRKHTP---SSAIQFLT 138 L+ N+R S++ Q + + I + S ++S + ++ I+ ++ Sbjct: 16 RGLSQNTRASYQRDLQQYLAFLQKKQVTQWQQIDRVIVLSFLQSLQEAGKSSATVIRMVS 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFWSEGSQPRL 194 S+R ++ ++ +P ++ PK++ + + ++ ++ + G + R Sbjct: 76 SLRRFHQYLRQERLTDHDPMQHIDSPKKQQKLPDTLSLQEVERLIETPDTRAVLGIRDRA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVE-----------LPDGFM 242 E + +GLR S+ + L ++ T K V Sbjct: 136 ILEVMYATGLRVSELIGLKLNDLHLSMGLLQTTGKGDKERIVPLGDLAIQWIETYLSDAR 195 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 L + F+NN +++ KA +AG+ K + H +R AT + Sbjct: 196 PYLTRKTPDESHLFVNNHGTQLSRQGIWKNLKALVRQAGITKNVTPHTLRHSFATHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329 GA + G + + YT + Sbjct: 256 GADLRTVQELLGHADISTTQIYTHITKKR 284 >gi|170725258|ref|YP_001759284.1| tyrosine recombinase XerD [Shewanella woodyi ATCC 51908] gi|169810605|gb|ACA85189.1| tyrosine recombinase XerD [Shewanella woodyi ATCC 51908] Length = 308 Score = 139 bits (351), Expect = 4e-31, Method: Composition-based stats. Identities = 43/298 (14%), Positives = 95/298 (31%), Gaps = 32/298 (10%) Query: 74 LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVE---SRK 127 LI + L+ N+ ++ + T IR ++ + Sbjct: 18 LIELFLDDLWSSRGLSSNTLSAYRTDLCHFEHYLIKSGIALCDATQGTIRDYLDVRFEKG 77 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +S+ + ++S+R + + V Q + ++P ++ P+ + ++ D+ S + Sbjct: 78 FARTSSARLISSLRRFYGFLVIQNRIEVDPTAQIKSPQLARKLPDSLSEADVDSLLSEPN 137 Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-----IITVELP 238 + + E L +GLR ++ ++ + ++ G + Sbjct: 138 LDDPIECRDKAMLELLYATGLRVTELVSLTMEQISLRQGVVRVVGKGGKERLVPLGEMAI 197 Query: 239 DGFMKLLAMTPIGKETFFINNDKQK------MNATQFSIWFKAKATKAGV--NKSAHGVR 290 L +++ M F K A +AG+ + S H +R Sbjct: 198 SEVESYLVAARGELLKQKMSDVLFPSKRGSMMTRQTFWHRIKHYALRAGISTDLSPHTLR 257 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 AT + GA + G + + YT A R+S + P Sbjct: 258 HAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAK---------ARLSQLHSEHHP 306 >gi|222055852|ref|YP_002538214.1| tyrosine recombinase XerD [Geobacter sp. FRC-32] gi|221565141|gb|ACM21113.1| tyrosine recombinase XerD [Geobacter sp. FRC-32] Length = 295 Score = 139 bits (351), Expect = 4e-31, Method: Composition-based stats. Identities = 45/283 (15%), Positives = 91/283 (32%), Gaps = 25/283 (8%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVE---S 125 + + L N+ ++ + G D IT + + Sbjct: 3 EYLDLFLNYLQVEKGLTKNTLEAYSRDLSVYLDFLAGQGRLDLDHITAMDVIEHLAGLKE 62 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQ 181 R +P S + L+++++ ++ + + + NP + +E P+ + ++ Sbjct: 63 RGLSPRSRARALSAVKMFHRFLMVENHCPNNPAVIIEAPRSLNRLPDVLSGREVELLLDS 122 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-----------KTQKTG 230 +S + E L +GLR S+ ++ + + + Sbjct: 123 ARSADLNDVRDLAMLEVLYATGLRVSELVALKLRDVNLDAGYLLTMGKGEKERLVPLGET 182 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHG 288 + ++ A E FI+ M F K +A AG+ KS H Sbjct: 183 ARLATAEYLRSARVKADRKGDCEILFISRLGDGMTRQAFWNIIKKRAAAAGIRKSISPHS 242 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +R AT + GA + G + + YT R RL Sbjct: 243 LRHSFATHLLENGADLRSVQIMLGHADLSSTQIYTHVT-RERL 284 >gi|330950740|gb|EGH51000.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae Cit 7] Length = 298 Score = 139 bits (351), Expect = 4e-31, Method: Composition-based stats. Identities = 52/281 (18%), Positives = 106/281 (37%), Gaps = 24/281 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT--TKHIRSGVESR---K 127 LI + + L+ N+R S+ S + + I+ + I + R Sbjct: 8 LIDRFLDALWLEKGLSDNTRDSYRSDLALFNGWLQERNVDLISAGREVILDHLAWRVENA 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 + P S +FL+ R +++ +R++ ++++P L ++ P+ + ++ D++ + Sbjct: 68 YKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADVEALLAAPD 127 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 G + R E L GLR ++ ++ + ++ V + + + Sbjct: 128 LSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEESI 187 Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290 + G F ++ +M F K +AT AG+ KS H +R Sbjct: 188 VWVERYLRGARDELLGGKPSDVLFPSSRGDQMTRQTFWHRIKHQATVAGIGKSLSPHTLR 247 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 AT + GA + G + + YT A R RL Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARL 287 >gi|331654392|ref|ZP_08355392.1| tyrosine recombinase XerD [Escherichia coli M718] gi|331047774|gb|EGI19851.1| tyrosine recombinase XerD [Escherichia coli M718] Length = 298 Score = 139 bits (351), Expect = 4e-31, Method: Composition-based stats. Identities = 42/279 (15%), Positives = 94/279 (33%), Gaps = 24/279 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRKH 128 I ++ + +LA N+ ++ ++ T + + + + Sbjct: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQCDDLQALLAERLEGGY 67 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +S+ + L+++R LF++ R+++ +P + PK + ++ +++ Sbjct: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 Query: 189 G----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243 + + E L +GLR S+ + + ++ V L + + Sbjct: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187 Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290 L + F + Q+M F K A AG++ S H +R Sbjct: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + GA + G + + YT A Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286 >gi|37527425|ref|NP_930769.1| site-specific tyrosine recombinase XerD [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786860|emb|CAE15925.1| Integrase/recombinase xerD [Photorhabdus luminescens subsp. laumondii TTO1] Length = 303 Score = 139 bits (351), Expect = 4e-31, Method: Composition-based stats. Identities = 49/287 (17%), Positives = 98/287 (34%), Gaps = 25/287 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQI---IRKSGD--FDYRKITTKHIRSGVESRK 127 LI ++ + LA N+ S+ + + G + I + Sbjct: 12 LIEQFLDAIWLEHDLAENTLASYRLDLQALDNWLIHHGHNLLSVQTIDLHSFLAERVDGG 71 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + SS+ + L++MR LF + R++ +P + PK + +++ ++ + Sbjct: 72 YKASSSARLLSAMRQLFLYFYREKMREDDPTALLSAPKLPKRLPKDLSEKQVEDLLNAPC 131 Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 + + E L GLR S+ + + ++ V L + + Sbjct: 132 TDQPVELRDKAMLEVLYACGLRVSELVGLTLSDVSLRQGVVRVIGKGNKERLVPLGEEAI 191 Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289 L F +N ++M F K A AG++ S H + Sbjct: 192 YWLENYLEYGRVGLLNGATLDVLFPSNRGRQMTRQTFWYRIKHYALLAGIDTGRLSPHVL 251 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKN 335 R AT + GA + G + + YT A +R++L + Sbjct: 252 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKLLHQQ 298 >gi|184156584|ref|YP_001844923.1| site-specific recombinase XerD [Acinetobacter baumannii ACICU] gi|183208178|gb|ACC55576.1| Site-specific recombinase XerD [Acinetobacter baumannii ACICU] gi|322506471|gb|ADX01925.1| xerD [Acinetobacter baumannii 1656-2] Length = 306 Score = 139 bits (351), Expect = 4e-31, Method: Composition-based stats. Identities = 45/275 (16%), Positives = 86/275 (31%), Gaps = 19/275 (6%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130 + +R +++ ++R ++ S Q T+ I + +P Sbjct: 20 FLQGFRDYLVAQTVSPHTRNAYLSDLIQCSELHKKNRLPDWTSDDISDVLIELTKVGKSP 79 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-- 188 S + L+++R +K+ Q+ + NP + PK + +ED++ Sbjct: 80 RSIARCLSALRQFYKFLREQKLRSDNPVATHHSPKIGRALPKDLCEEDVEALIQAPDITT 139 Query: 189 --GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLL 245 G + R FE L GLR S+ ++ + ++ V L + Sbjct: 140 ALGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGYLRITGKGNKERLVPLGQYACDWV 199 Query: 246 AMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 M+ F K A +A + S H +R A Sbjct: 200 ERYLNEARPQLYKSSTDYLFLTQHGGIMSRQNFWYAIKRYALQANIQAELSPHTLRHAFA 259 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 T + GA + G + + YT A Sbjct: 260 THLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR 294 >gi|329296874|ref|ZP_08254210.1| tyrosine recombinase XerD [Plautia stali symbiont] Length = 297 Score = 139 bits (351), Expect = 4e-31, Method: Composition-based stats. Identities = 47/282 (16%), Positives = 98/282 (34%), Gaps = 24/282 (8%) Query: 72 KWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR-- 126 LI ++ + +LA N+ S+ + + ++ + R Sbjct: 4 SDLIEQFLDALWTERNLAQNTLASYRQDLQTLTAWLHHHERTLLSLEAADLQQFLAERIE 63 Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + +S+ + L++MR LF++ R++ + +P + PK + ++ +++ Sbjct: 64 GGYKATSSARTLSAMRRLFQYLYREKLRSDDPSALLSAPKLPQRLPKDLSENQVERLLQA 123 Query: 186 WSEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDG 240 + + + E L +GLR S+ + + ++ V L + Sbjct: 124 PATDIPLELRDKAMLELLYATGLRVSELVGLTLSDVSLRQGVVRVIGKGNKERLVPLGEE 183 Query: 241 FMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287 + L + F +N Q+M F K AT AG++ S H Sbjct: 184 AIYWLEHYMEHGRPWLLNGQTIDVLFPSNRAQQMTRQTFWHRIKHYATLAGIDSEKLSPH 243 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R AT + GA + G + + YT A Sbjct: 244 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 285 >gi|227541999|ref|ZP_03972048.1| site-specific tyrosine recombinase XerD [Corynebacterium glucuronolyticum ATCC 51866] gi|227182214|gb|EEI63186.1| site-specific tyrosine recombinase XerD [Corynebacterium glucuronolyticum ATCC 51866] Length = 360 Score = 139 bits (351), Expect = 4e-31, Method: Composition-based stats. Identities = 47/320 (14%), Positives = 96/320 (30%), Gaps = 26/320 (8%) Query: 39 HESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW-LISEYRKSAHW-GSLAVNSRISFE 96 + + R + R + T + ++ A N+ S+ Sbjct: 33 RGAQTSQRETEDSADTADSRPLRSGNRHQAETSAAKVARQWITYLTVERGKARNTIASYR 92 Query: 97 SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYV 153 + G+ I I + ++S +S + L+++R +A + V Sbjct: 93 RDLASYLDFVGERSLDSIAATDIEAFLQSLGRHGLAVTSVRRMLSTIRGFHAFARDEGIV 152 Query: 154 AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDS 209 A + + P + +++ + S + + E L +G R S+ Sbjct: 153 ADDVAHDITPPAMPQHLPDTLSVDEINTLIESQAGDSAVALRNKALLELLYGTGARISEV 212 Query: 210 CRAGVQHLQNNIFSI----KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK---- 261 V + + T K V + + + + Sbjct: 213 LSLAVDDITALEETDGILVLTGKGDKQRIVPVGSHARQAVDAYLVRGRPQLNKGKSAALF 272 Query: 262 ------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGW 313 + M+ K AT+AG+ + S H +R AT + GA + G Sbjct: 273 LNVRGGKAMSRQSAWQVVKQAATEAGITKDISPHTLRHSFATHLLEGGADVRSVQELLGH 332 Query: 314 KTVDQAETYTK-GADRIRLG 332 +V + YT AD +R Sbjct: 333 ASVTTTQIYTHITADSLRAM 352 >gi|302035678|ref|YP_003796000.1| phage integrase [Candidatus Nitrospira defluvii] gi|300603742|emb|CBK40074.1| Phage integrase [Candidatus Nitrospira defluvii] Length = 373 Score = 139 bits (351), Expect = 5e-31, Method: Composition-based stats. Identities = 59/334 (17%), Positives = 108/334 (32%), Gaps = 16/334 (4%) Query: 17 RHGKIIYYFRKGHGRRIRLPYPHE-STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75 + G I + G+RIR A M+ + + +Y ++ T L+ Sbjct: 5 KRGNIWWMNIVFQGKRIRRSTGSSNRALADAIMAKVKVQLIEGQYFERAEEQSRTFAELM 64 Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSS 132 + + + + + + + GD +IT K I R P+S Sbjct: 65 DRFEREHLVKLASRQTGQA---FLKRFRAFFGDRTLAEITPKLIVEYKSRRSATGVKPAS 121 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 + LT +R F A R+ + +S ++ W ED + S Sbjct: 122 INRELTCLRKAFSLAKREWEWCRDNPVSRVSLEKGATKRDRWLMEDEEARLLDACP-SWL 180 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--TGTIITVELPDGFMKLLAMTPI 250 R F L+SG+R + + + + TV L M LL Sbjct: 181 RELVVFALHSGMRLGEILSLTWNGVDLFRRTATVFESKNEERRTVPLNQTVMALLTEKAK 240 Query: 251 GKETFFINNDK----QKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAH 305 + +++ + KAG+ N H +R AT AG + Sbjct: 241 VRHIKTALVFPSLAGTRLDPNHLRRALRPAMAKAGIVNCHFHDLRHTFATRLVQAGVDLY 300 Query: 306 ELMATYGWKTVDQAETYTKG-ADRIRLGIKNSRR 338 ++ G K+ + Y + +R G++ R Sbjct: 301 KVQRLLGHKSPLMTQRYAHHYPESLRDGVEILDR 334 >gi|220935295|ref|YP_002514194.1| tyrosine recombinase XerD [Thioalkalivibrio sp. HL-EbGR7] gi|219996605|gb|ACL73207.1| tyrosine recombinase XerD [Thioalkalivibrio sp. HL-EbGR7] Length = 308 Score = 139 bits (351), Expect = 5e-31, Method: Composition-based stats. Identities = 52/291 (17%), Positives = 97/291 (33%), Gaps = 27/291 (9%) Query: 65 RKKPTTLKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRS 121 P+TL I + + L+ ++ ++ + + R G + + + Sbjct: 10 TAPPSTLA--IDAFLDAIWAEHGLSDHTLAAYRADLMALARWLGPRGKRVEQADRGDLLA 67 Query: 122 GVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + R P S + L+S+R ++ VR +P ++ PK ++ D Sbjct: 68 YLSHRVAGGARPRSTARLLSSLRRFYRHQVRDGRRQDDPTAQIDSPKLGRPLPDTLSETD 127 Query: 179 MQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-- 232 ++ + G + R E L +GLR S+ V + ++T G+ Sbjct: 128 VEALLASPDTDTDLGLRDRAMLELLYATGLRVSELVGLRVDQVNLRHGVVRTLGKGSKER 187 Query: 233 ----------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 L + F+ M F + A +AG+ Sbjct: 188 LVPLGEEASVWVERYLGAARPALLAGQGACDDLFVTRRGGAMTRQAFWHLLRRYAAQAGI 247 Query: 283 NK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +K S H +R AT + GA + G + + YT A R RL Sbjct: 248 HKHLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARL 297 >gi|15598933|ref|NP_252427.1| site-specific tyrosine recombinase XerD [Pseudomonas aeruginosa PAO1] gi|107103253|ref|ZP_01367171.1| hypothetical protein PaerPA_01004322 [Pseudomonas aeruginosa PACS2] gi|116051736|ref|YP_789425.1| site-specific tyrosine recombinase XerD [Pseudomonas aeruginosa UCBPP-PA14] gi|218889984|ref|YP_002438848.1| site-specific tyrosine recombinase XerD [Pseudomonas aeruginosa LESB58] gi|254236648|ref|ZP_04929971.1| integrase/recombinase XerD [Pseudomonas aeruginosa C3719] gi|254242429|ref|ZP_04935751.1| integrase/recombinase XerD [Pseudomonas aeruginosa 2192] gi|296387753|ref|ZP_06877228.1| site-specific tyrosine recombinase XerD [Pseudomonas aeruginosa PAb1] gi|313109145|ref|ZP_07795116.1| integrase/recombinase XerD [Pseudomonas aeruginosa 39016] gi|34223067|sp|Q9HXQ6|XERD_PSEAE RecName: Full=Tyrosine recombinase xerD gi|9949906|gb|AAG07125.1|AE004793_2 integrase/recombinase XerD [Pseudomonas aeruginosa PAO1] gi|115586957|gb|ABJ12972.1| integrase/recombinase XerD [Pseudomonas aeruginosa UCBPP-PA14] gi|126168579|gb|EAZ54090.1| integrase/recombinase XerD [Pseudomonas aeruginosa C3719] gi|126195807|gb|EAZ59870.1| integrase/recombinase XerD [Pseudomonas aeruginosa 2192] gi|218770207|emb|CAW25969.1| integrase/recombinase XerD [Pseudomonas aeruginosa LESB58] gi|310881618|gb|EFQ40212.1| integrase/recombinase XerD [Pseudomonas aeruginosa 39016] Length = 298 Score = 139 bits (351), Expect = 5e-31, Method: Composition-based stats. Identities = 57/296 (19%), Positives = 102/296 (34%), Gaps = 25/296 (8%) Query: 70 TLKW-LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVES 125 TL+ LI + + LA N+R ++ + Q I I + Sbjct: 3 TLEHPLIDRFLDALWLEKGLADNTREAYRNDLQQFNAWLDGRGLRLEGIGRDAILDHLAW 62 Query: 126 R---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 R + S +FL+ +R +++ +R +A +P L V+ P+ + ++ D++ Sbjct: 63 RLEQGYKARSTARFLSGLRGFYRYCLRDGLIAEDPTLQVDLPQLGKPLPKSLSEADVEAL 122 Query: 183 KSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVEL 237 + G + R E L GLR S+ ++ + K V L Sbjct: 123 LAAPEVDDPLGLRDRTMLEVLYACGLRVSELVGLTLEQVNLRQGVVKVFGKGSKERLVPL 182 Query: 238 PDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKA--GVNKS 285 + + L + F + ++M F K A A G + S Sbjct: 183 GEEAIGWLERYLREARGDLLGGRPSDVLFPSLRGEQMTRQTFWHRIKHHAQVAAIGTSIS 242 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 H +R AT + GA + G + + YT A R RL ++R Sbjct: 243 PHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHIA-RARLQDLHARHHPR 297 >gi|229846398|ref|ZP_04466506.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae 7P49H1] gi|229810491|gb|EEP46209.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae 7P49H1] Length = 297 Score = 139 bits (351), Expect = 5e-31, Method: Composition-based stats. Identities = 42/281 (14%), Positives = 91/281 (32%), Gaps = 24/281 (8%) Query: 73 WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESR 126 LI + L+ N+ S+ + D + + + Sbjct: 5 ALIDLFLNEYWIEKGLSENTVQSYRLDLTALCDWLDKNDLSLETLDAVDLQGFLGERLEK 64 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + +S + L++MR LF++ R++Y +P + PK + + T++ + + Sbjct: 65 GYKVTSTARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQVSDLLNTP 124 Query: 187 SEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 + + E L +GLR ++ ++++ ++ V + + Sbjct: 125 DVDVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKGNKERIVPMGEEA 184 Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 + + F + Q+M F K A A ++ S H Sbjct: 185 AYWVRQFMLYGRPVLLNRQSSDVVFPSQRAQQMTRQTFWHRVKHYAILADIDADALSPHV 244 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R AT + GA + G + + YT A Sbjct: 245 LRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKER 285 >gi|50119715|ref|YP_048882.1| site-specific tyrosine recombinase XerD [Pectobacterium atrosepticum SCRI1043] gi|49610241|emb|CAG73684.1| integrase/recombinase [Pectobacterium atrosepticum SCRI1043] Length = 299 Score = 139 bits (351), Expect = 5e-31, Method: Composition-based stats. Identities = 43/280 (15%), Positives = 93/280 (33%), Gaps = 24/280 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVESRK 127 LI ++ + +LA N+ S+ + D + + + + Sbjct: 8 LIEQFLDALWLERNLAENTLASYRLDLRSLAEWLAHHDNDLLHAQALDLQAFLADRIDGG 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185 + +S+ + L++MR F++ R++ + +P + PK + ++ + Sbjct: 68 YKATSSARLLSAMRRFFQYLYREKQRSDDPSAVLSSPKLPQRLPKDLSEAQVSALLDAPS 127 Query: 186 --WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFM 242 + + E L +GLR S+ + + ++ K V L + + Sbjct: 128 IEQPLELRDKAMLEVLYATGLRVSELVGLTMSDVSLRQGVVRVLGKGNKERLVPLGEEAV 187 Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289 + + F +N ++M F K A A ++ S H + Sbjct: 188 YWIEYYLEHGRPWLLNGQTLDVLFPSNRARQMTRQTFWHRIKHYAVLASIDSAKLSPHVL 247 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + GA + G + + YT A Sbjct: 248 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 287 >gi|330975463|gb|EGH75529.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 298 Score = 139 bits (351), Expect = 5e-31, Method: Composition-based stats. Identities = 52/281 (18%), Positives = 105/281 (37%), Gaps = 24/281 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT--TKHIRSGVESR---K 127 LI + + L+ N+R S+ S + + I+ + I + R Sbjct: 8 LIDRFLDALWLEKGLSDNTRDSYRSDLALFNGWLQERNVDLISAGREVILDHLAWRVENA 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 + P S +FL+ R +++ +R++ ++++P L ++ P+ + ++ D++ + Sbjct: 68 YKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADVEALLAAPD 127 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 G + R E L GLR ++ ++ + ++ V + + + Sbjct: 128 LSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEESI 187 Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290 + G F + +M F K +AT AG+ KS H +R Sbjct: 188 VWVERYLRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGIGKSLSPHTLR 247 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 AT + GA + G + + YT A R RL Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARL 287 >gi|218701603|ref|YP_002409232.1| site-specific tyrosine recombinase XerD [Escherichia coli IAI39] gi|254037938|ref|ZP_04871996.1| site-specific tyrosine recombinase [Escherichia sp. 1_1_43] gi|218371589|emb|CAR19428.1| site-specific tyrosine recombinase [Escherichia coli IAI39] gi|226839562|gb|EEH71583.1| site-specific tyrosine recombinase [Escherichia sp. 1_1_43] Length = 298 Score = 139 bits (351), Expect = 5e-31, Method: Composition-based stats. Identities = 42/279 (15%), Positives = 97/279 (34%), Gaps = 24/279 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR---KH 128 I ++ + +LA N+ ++ ++ + + +++ + R + Sbjct: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATVQSDDLQALLAERLEGGY 67 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +S+ + L+++R LF++ R+++ +P + PK + ++ +++ Sbjct: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 Query: 189 G----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243 + + E L +GLR S+ + + ++ V L + + Sbjct: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187 Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290 L + F + Q+M F K A AG++ S H +R Sbjct: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + GA + G + + YT A Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286 >gi|152976499|ref|YP_001376016.1| site-specific tyrosine recombinase XerD [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025251|gb|ABS23021.1| tyrosine recombinase XerD [Bacillus cytotoxicus NVH 391-98] Length = 296 Score = 139 bits (351), Expect = 5e-31, Method: Composition-based stats. Identities = 37/269 (13%), Positives = 96/269 (35%), Gaps = 24/269 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRK---HTPSSAIQFL 137 LA N+ +S+E ++ + ++T I + ++ + + + + + Sbjct: 16 KGLAKNTVVSYERDLKSYVKYLQKVEQMKTFHEVTRMQIVNFLQHLRENGKSSKTLARHI 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193 S+R ++ +R+ V +P + +E P+ + + + + +++ G + + Sbjct: 76 ASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSVSEVEALLQTPKTTSAYGIRDK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252 E L +GLR S+ ++ + + ++ + L + + Sbjct: 136 AMLELLYATGLRVSELIALNLEDVHLTMGFVRCVGKGNKERIIPLGSLATEAIQRYIEKG 195 Query: 253 ETFFI----------NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 + N+ +++ F K A +A + K + H +R AT + Sbjct: 196 RKELMGKKAVDALFLNHHGNRLSRQGFWKILKRLAKEANIEKELTPHTLRHSFATHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329 GA + G + + YT + Sbjct: 256 GADLRAVQEMLGHADISTTQIYTHVSKTR 284 >gi|146312952|ref|YP_001178026.1| site-specific tyrosine recombinase XerD [Enterobacter sp. 638] gi|145319828|gb|ABP61975.1| tyrosine recombinase XerD subunit [Enterobacter sp. 638] Length = 298 Score = 139 bits (351), Expect = 5e-31, Method: Composition-based stats. Identities = 44/281 (15%), Positives = 94/281 (33%), Gaps = 24/281 (8%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVESR 126 LI ++ + +LA N+ ++ + + + + + Sbjct: 6 ALIEQFLDALWLEKNLAENTLSAYRRDLTMLAEWLAHRGLSLEQAQRDDLQTLLAERMDG 65 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + +S+ + L++MR LF+ R++ A +P + PK + ++ + + Sbjct: 66 GYKATSSARLLSAMRRLFQHLYREKLRADDPSALLASPKLPQRLPKDLSEAQVDRLLQSP 125 Query: 187 SEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 + + + E L +GLR S+ + + ++ V L + Sbjct: 126 TVDVPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEA 185 Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 + + + F + Q+M F K AT AG++ S H Sbjct: 186 VYWVETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYATLAGIDSEKLSPHV 245 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R AT + GA + G + + YT A Sbjct: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286 >gi|271499210|ref|YP_003332235.1| tyrosine recombinase XerD [Dickeya dadantii Ech586] gi|270342765|gb|ACZ75530.1| tyrosine recombinase XerD [Dickeya dadantii Ech586] Length = 299 Score = 139 bits (351), Expect = 5e-31, Method: Composition-based stats. Identities = 48/281 (17%), Positives = 97/281 (34%), Gaps = 24/281 (8%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESR--- 126 LI ++ + +LA N+ S+ + + D + ++ + R Sbjct: 7 ALIEQFLDALWLERNLAENTLSSYRNDLSSLAEWLAHHDRHLLEAQPSDLQDFLAERLEG 66 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 + +S+ + L++MR LF++ R++ +P + PK + T+ ++ + Sbjct: 67 GYKATSSARLLSAMRRLFQYLYREKRRTDDPSAPLSSPKLPQRLPKDLTEAQVEALLAAP 126 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 + + E L +GLR S+ + + ++ V L + Sbjct: 127 VTDQPIELRDKAMLELLYATGLRVSELVGLTMSDVSLRQGVVRVVGKGNKERLVPLGEEA 186 Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 + L + F +N Q+M F K AT A ++ S H Sbjct: 187 VYWLEQYLEYSRPWLLNGQTLDVLFPSNRAQQMTRQTFWHRIKHYATLASIDSNKLSPHV 246 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R AT + GA + G + + YT A Sbjct: 247 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 287 >gi|298531211|ref|ZP_07018611.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] gi|298508821|gb|EFI32727.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] Length = 394 Score = 139 bits (351), Expect = 5e-31, Method: Composition-based stats. Identities = 48/349 (13%), Positives = 104/349 (29%), Gaps = 26/349 (7%) Query: 8 PPFVTKERTRHGKIIYYFRKGHG----RRIRLPYPHESTFIPAYMSALTGSTP-----KR 58 P F+ + R+ GK YY R ++ R+ T A A + Sbjct: 31 PGFIMEVRS-TGKSTYYQRYRDKFGRLKQARIAPVDSITLEEARQKAKQIRSQTTMGFDP 89 Query: 59 EYINSPRKKPTTLKWLI-SEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITT 116 + T K I +Y + + +++ G+ +IT Sbjct: 90 RDEAEKNRNTPTFKEFIRDQYIPYIQVHKRS---WDQDSKMLELRVLPLWGNMKMSEITR 146 Query: 117 KHIRSGVE---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 ++ P + +++ ++ +F A + + + P + R + R Sbjct: 147 DDVQQFQSNFLRAGCKPGTVNRYMALVKYIFNLAEKWDVIEKTPARHISRLEDNNCKERY 206 Query: 174 WTKEDMQQFKS--FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 + E+ ++ + E L+ +G R S+ Q L Sbjct: 207 LSSEETKRLLGELKNCKSQVVPDIIELLILTGARKSEVVNLPWQELDLKQGLWTIPPERN 266 Query: 232 IITVELPDG----FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSA 286 +++L + N K F + AG+ Sbjct: 267 KAKTRKTIPLSQGALRILEKRKHNGSEYVFPNPKTGGPIKHFHNTWDRVRKNAGIPDVRI 326 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIK 334 H +R A++ ++G + +E+ G + + Y D +R + Sbjct: 327 HDLRHNFASLLVNSGRSLYEVQKLLGHSNISTTQRYAHLTQDTLRDATE 375 >gi|324115089|gb|EGC09054.1| tyrosine recombinase XerD [Escherichia fergusonii B253] Length = 298 Score = 139 bits (351), Expect = 5e-31, Method: Composition-based stats. Identities = 42/279 (15%), Positives = 93/279 (33%), Gaps = 24/279 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRKH 128 I ++ + +LA N+ ++ ++ T + + + + Sbjct: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +S+ + L+++R LF++ R+ + +P + PK + ++ +++ Sbjct: 68 KATSSARLLSAVRRLFQYLYRENFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 Query: 189 G----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243 + + E L +GLR S+ + + ++ V L + + Sbjct: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187 Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290 L + F + Q+M F K A AG++ S H +R Sbjct: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + GA + G + + YT A Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286 >gi|145634691|ref|ZP_01790400.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae PittAA] gi|145268236|gb|EDK08231.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae PittAA] Length = 297 Score = 139 bits (351), Expect = 5e-31, Method: Composition-based stats. Identities = 42/281 (14%), Positives = 91/281 (32%), Gaps = 24/281 (8%) Query: 73 WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESR 126 LI + L+ N+ S+ + D + + + Sbjct: 5 ALIDLFLNEYWIEKGLSENTVQSYRLDLTALCDWLDKNDLSLETLDAVDLQGFLGERLEK 64 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + +S + L++MR LF++ R++Y +P + PK + + T++ + + Sbjct: 65 GYKATSTARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQVSDLLNTP 124 Query: 187 ----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 + + E L +GLR ++ ++++ ++ V + + Sbjct: 125 DVEVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKGNKERIVPMGEEA 184 Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 + + F + Q+M F K A A ++ S H Sbjct: 185 AYWVRQFMLYGRPVLLNRQSSDVVFPSQRAQQMTRQTFWHRVKHYAILADIDADTLSPHV 244 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R AT + GA + G + + YT A Sbjct: 245 LRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKER 285 >gi|30249429|ref|NP_841499.1| phage integrase domain/SAM domain-containing protein [Nitrosomonas europaea ATCC 19718] gi|30138792|emb|CAD85369.1| Phage integrase:Phage integrase N-terminal SAM-like domain [Nitrosomonas europaea ATCC 19718] Length = 318 Score = 139 bits (351), Expect = 5e-31, Method: Composition-based stats. Identities = 50/281 (17%), Positives = 103/281 (36%), Gaps = 26/281 (9%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVESR---KHTPSSAIQFL 137 L+ N+ S+ + Q++ G +T + + + R S+ + L Sbjct: 36 GLSRNTLASYRADLMQLVEWLGRQPRTNGSLSDVTQADLLAFLSDRIGQGVKASTTCRAL 95 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWSEGSQPR 193 T ++ +++ +RQ + +P +++ PK T+ +++ + G + R Sbjct: 96 TCIKRFYRYLLRQGKILADPATNIDSPKISRHLPVSLTETEVEALLAAPDTRQPLGLRDR 155 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPI-- 250 E L +GLR S+ + ++ ++ ++ K + L + + L++ Sbjct: 156 AMLEILYAAGLRVSELVGLSISQIRQDMGVVRILGKGSKERLIPLGEEALHWLSLYLQEA 215 Query: 251 --------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 F+ M F K A +AG+ K S H +R AT + Sbjct: 216 RPVLLAGKHSNMSFVTTRGDAMTRQAFWYLIKRHARQAGIVKLLSPHTLRHAFATHLLNH 275 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 GA + G + + YT A R RL ++R Sbjct: 276 GADLRVVQLLLGHSDISTTQIYTHVA-RERLKQLHARHHPR 315 >gi|319775822|ref|YP_004138310.1| Site-specific recombinase XerD [Haemophilus influenzae F3047] gi|329123666|ref|ZP_08252226.1| tyrosine recombinase XerD [Haemophilus aegyptius ATCC 11116] gi|317450413|emb|CBY86629.1| Site-specific recombinase XerD [Haemophilus influenzae F3047] gi|327469865|gb|EGF15330.1| tyrosine recombinase XerD [Haemophilus aegyptius ATCC 11116] Length = 297 Score = 139 bits (351), Expect = 5e-31, Method: Composition-based stats. Identities = 41/281 (14%), Positives = 90/281 (32%), Gaps = 24/281 (8%) Query: 73 WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESR 126 LI + L+ N+ S+ + + + + Sbjct: 5 ALIDLFLNEYWIEKGLSENTVQSYRLDLTALCDWLDKNGLSLETLDAVDLQGFLGERLEK 64 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + +S + L++MR LF++ R++Y +P + PK + + T++ + + Sbjct: 65 GYKATSTARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQVSDLLNTP 124 Query: 187 ----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 + + E L +GLR ++ ++++ ++ V + + Sbjct: 125 DVEVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKGNKERIVPMGEEA 184 Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 + + F + Q+M F K A A ++ S H Sbjct: 185 AYWVRQFMLYGRPVLLNGQSSDVVFPSQRAQQMTRQTFWHRVKHYAILADIDAEALSPHV 244 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R AT + GA + G + + YT A Sbjct: 245 LRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKER 285 >gi|229134899|ref|ZP_04263706.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-ST196] gi|228648574|gb|EEL04602.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-ST196] Length = 296 Score = 139 bits (351), Expect = 5e-31, Method: Composition-based stats. Identities = 38/269 (14%), Positives = 99/269 (36%), Gaps = 24/269 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRK---HTPSSAIQFL 137 LA N+ +S+E ++ + + ++T HI + ++ K + + + + Sbjct: 16 KGLAKNTVVSYERDLKSYVKYLQNVEQTKTFHEVTRLHIVNFLQHLKENGKSSKTLARHI 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPR 193 S+R ++ +R+ V +P + +E P+ + + + + ++++ + G + + Sbjct: 76 ASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSIDEVEALLQTTKTASAFGIRDK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252 E L +GLR S+ ++ + + ++ + L + + Sbjct: 136 AMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNKERIIPLGSLATEAIQKYIEKG 195 Query: 253 ETFFI----------NNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300 + N+ +++ F K A +A + + H +R AT + Sbjct: 196 RRELMGKKAVDALFLNHHGNRLSRQGFWKILKRLAKEANIAKELTPHTLRHSFATHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329 GA + G + + YT + Sbjct: 256 GADLRAVQEMLGHADISTTQIYTHVSKTR 284 >gi|33592631|ref|NP_880275.1| site-specific tyrosine recombinase XerD [Bordetella pertussis Tohama I] gi|33572277|emb|CAE41829.1| integrase/recombinase [Bordetella pertussis Tohama I] Length = 310 Score = 139 bits (351), Expect = 5e-31, Method: Composition-based stats. Identities = 48/307 (15%), Positives = 95/307 (30%), Gaps = 35/307 (11%) Query: 62 NSPRKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDF----------D 110 ++P L I + + LA N+ ++ + + Sbjct: 4 SAPLASQADLDAFIDAVWLED----GLAANTLAAYRRDLSAFAQWLENLACHPGLATGAS 59 Query: 111 YRKITTKHIRSGVESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168 R+ I + +R ++A + L ++R + WA+R+ +PCL++ K+ Sbjct: 60 LREAGKGDIEAWFAARHAESRATTANRRLAALRRFYAWALRERLTPSDPCLTLVTAKQPP 119 Query: 169 EGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 + ++ + + + R E L +GLR S+ + N + Sbjct: 120 RLPKTLSEAQVDALLQAPDLDTARGLRDRAMLETLYATGLRVSELVSVKALDVSLNEGVV 179 Query: 225 K--TQKTGTIITVELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIW 272 + K G V L + F+ + M+ F Sbjct: 180 RVVMGKGGKDRLVPLGAEAAHWIERYAGSARPELLGARVADALFVTARAEPMSRQAFWQL 239 Query: 273 FKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 K A A + S H +R AT + GA + G + + YT A Sbjct: 240 VKKYALAADIHAPLSPHVLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERL 299 Query: 331 LGIKNSR 337 + + Sbjct: 300 KALHAAH 306 >gi|262404730|ref|ZP_06081285.1| site-specific recombinase XerD [Vibrio sp. RC586] gi|262349762|gb|EEY98900.1| site-specific recombinase XerD [Vibrio sp. RC586] Length = 302 Score = 139 bits (351), Expect = 5e-31, Method: Composition-based stats. Identities = 45/280 (16%), Positives = 104/280 (37%), Gaps = 24/280 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRK--- 127 L+ ++ + + LA N+ S+ + +++ + I+ ++ Sbjct: 11 LVEQFLDAMWFERGLAENTVASYRNDLSKLLGWMAQHQYRLDFISFSGLQEYQIWLTEQD 70 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + P+S + L+++R LF++ R++ A +P + PK T + T+ ++ S Sbjct: 71 YKPTSKARMLSAIRRLFQYLHREKVRADDPSALLISPKLPTRLPKDLTEAQVEALLSAPD 130 Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM 242 + + + E L +GLR ++ ++++ ++ G V + + + Sbjct: 131 PQTPIELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVIGKGGKERLVPMGENAV 190 Query: 243 KLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289 + + + F ++ Q+M F K A A ++ S H + Sbjct: 191 EWIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAEIDVEQLSPHVL 250 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + GA + G + + YT A Sbjct: 251 RHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER 290 >gi|119386436|ref|YP_917491.1| phage integrase family protein [Paracoccus denitrificans PD1222] gi|119377031|gb|ABL71795.1| phage integrase family protein [Paracoccus denitrificans PD1222] Length = 342 Score = 139 bits (351), Expect = 5e-31, Method: Composition-based stats. Identities = 81/346 (23%), Positives = 128/346 (36%), Gaps = 21/346 (6%) Query: 4 SLRLPPFVTKERTRHGKIIYYFR-------KGHGRRIRLPY-PHESTFIPAYMSALTGST 55 + P+VT +RT GK +Y+R + R I LP P F AY S +G++ Sbjct: 2 RKQRKPYVTLKRT-GGKARWYYRLTWFEGARRRERFIPLPDDPDSEEFDRAYWSIRSGTS 60 Query: 56 PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115 + + R K T + L+ YR SA + LA ++ S+ + I+ + D IT Sbjct: 61 EEVQ-----RPKKETWRQLVMAYRGSAGFRKLAPRTQKSYNDTIEWILSANADKAVSTIT 115 Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 + +R TP A + + +L +A Q A+ K PW Sbjct: 116 KQKLRDLHVKYGETPRKADMLVQMVSILVNFARTQLEWAVTNPAEGLTLYGKQREYEPWP 175 Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 + ++ R A E +L +G R S + ++ +K + Sbjct: 176 EWMVKALPDAP---LVVRSAAELILGTGQRPSAAIVMRRDQFHGEWMTVTDEKGDESYEI 232 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA---HGVRKF 292 P LA P+ + N Q M F+A T G HG+RK Sbjct: 233 FCPQELRSYLASLPVAGQHVIPRNLTQPMRYDSVEKAFRAWRTDLGDRARPFSLHGLRKL 292 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338 S A+AG T E+ A ++ Y K A+R +L R Sbjct: 293 SIIRLAEAGCTDAEIQAITN-QSAQTVAYYRKRANRKKLSRAAMER 337 >gi|160876749|ref|YP_001556065.1| tyrosine recombinase XerD [Shewanella baltica OS195] gi|160862271|gb|ABX50805.1| tyrosine recombinase XerD [Shewanella baltica OS195] Length = 309 Score = 139 bits (351), Expect = 5e-31, Method: Composition-based stats. Identities = 44/283 (15%), Positives = 90/283 (31%), Gaps = 28/283 (9%) Query: 74 LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRK 127 LI + L+ N+ ++ + R + + + + Sbjct: 19 LIDVFLDDLWSNKGLSDNTLSAYRTDLRHFDRYQAQQGVTLLSVSQADVRAYLAFRVEQD 78 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +S+ + L+S+R + + V+ + ++ +P VE PK ++ + + S + Sbjct: 79 FARTSSARLLSSLRRFYTYLVQTKQISADPMALVESPKLTRHLPDSLSESQVDRLLSEPN 138 Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-------------G 230 + + E L +GLR S+ ++ + ++ Sbjct: 139 VEDAVECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVRIVGKGGKERLVPLGELAI 198 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHG 288 T + + +LL F K A +AG+ S H Sbjct: 199 TEVESYMKFARQELLGNKQSDVVFPSKRGQMM--TRQTFWHRIKLYALRAGIETALSPHT 256 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +R AT + GA + G + + YT A R RL Sbjct: 257 LRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVA-RARL 298 >gi|158522508|ref|YP_001530378.1| integrase family protein [Desulfococcus oleovorans Hxd3] gi|158511334|gb|ABW68301.1| integrase family protein [Desulfococcus oleovorans Hxd3] Length = 308 Score = 139 bits (351), Expect = 5e-31, Method: Composition-based stats. Identities = 50/303 (16%), Positives = 107/303 (35%), Gaps = 37/303 (12%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIR---SG 122 L + +S + N+ ++ + + + D I+ IR + Sbjct: 13 LADAFVESLASEKGYSPNTCRAYSADLKEFLAFLSPPDDTEHPVCLDDISVIAIRGYLAF 72 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + +K S+ + L+ +R F++ ++ + NP +V PK + + +DM + Sbjct: 73 LHKKKMDKSTVSRKLSVLRSFFRYLEKRGIMTGNPARAVLSPKIGRKIPAFLSVDDMFRL 132 Query: 183 KSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVEL 237 + + + R FE + +G+R S++ H++ + + G V + Sbjct: 133 LDASTGDTLLDLRNRAIFETIYSTGIRVSEAAGLDAAHVETDERVFRVYGKGAKERVVPV 192 Query: 238 PDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN--KS 285 + +A F+N ++ ++ K A + G+ S Sbjct: 193 GKKALASIAAYRTRLFEETGIGVEEGPLFLNKNRGRLTTRSMDRILKQTALRCGLTVSLS 252 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345 H +R AT DAGA + G K++ + YT + ++ V D Sbjct: 253 PHALRHSFATHMLDAGADLRTVQEILGHKSLSTTQKYTHVS---------MDKLMEVYDH 303 Query: 346 DDP 348 P Sbjct: 304 AHP 306 >gi|312883960|ref|ZP_07743677.1| site-specific tyrosine recombinase XerD [Vibrio caribbenthicus ATCC BAA-2122] gi|309368418|gb|EFP95953.1| site-specific tyrosine recombinase XerD [Vibrio caribbenthicus ATCC BAA-2122] Length = 302 Score = 139 bits (351), Expect = 5e-31, Method: Composition-based stats. Identities = 39/280 (13%), Positives = 101/280 (36%), Gaps = 24/280 (8%) Query: 74 LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESR---K 127 ++ ++ + L+ N+ S+ + ++++ ++ I+ ++ Sbjct: 11 VVEQFLDAMWMERGLSENTLSSYRNDLFKLLKWMFENNYRLNFISISGLQDFQSWLVDEG 70 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + +S + L+++R LF++ R+ + +P + PK + +++ + S Sbjct: 71 YKQTSRARMLSALRRLFQYMHRERLRSDDPSALLVSPKLPKRLPKDLSEQQVDALLSAPD 130 Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM 242 + + E L +GLR ++ ++++ ++ G V + + + Sbjct: 131 ANNPIELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVTGKGGKERLVPMGEDAI 190 Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289 + + + F + ++M F K A AG++ S H + Sbjct: 191 EWIETFLHQGRSELLGEKTSDVVFPSKRAKQMTRQTFWHRIKYYAMLAGIDSELLSPHVL 250 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + GA + G + + YT A Sbjct: 251 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 290 >gi|254508834|ref|ZP_05120944.1| tyrosine recombinase XerD [Vibrio parahaemolyticus 16] gi|219548220|gb|EED25235.1| tyrosine recombinase XerD [Vibrio parahaemolyticus 16] Length = 298 Score = 139 bits (351), Expect = 5e-31, Method: Composition-based stats. Identities = 40/280 (14%), Positives = 99/280 (35%), Gaps = 24/280 (8%) Query: 74 LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESR---K 127 L+ ++ + L+ N+ S+ + ++++ ++ I+ ++ Sbjct: 7 LVEQFLDAMWMERGLSENTLASYRNDLSKLLQWMSKHNYRLDFISLSGLQEYQTWLADEG 66 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + +S + L+++R LF++ R++ A +P + PK + ++ + Sbjct: 67 YKQTSRARMLSAIRRLFQYLHREKIRADDPSALLVSPKLPKRLPKDLSEAQVDALLDAPD 126 Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM 242 + + E L +GLR ++ ++++ ++ G V + + + Sbjct: 127 PNDPMELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVTGKGGKERLVPMGENAV 186 Query: 243 KLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289 + + F + ++M F K A AG++ S H + Sbjct: 187 DWIETFLEQGRSELLGENTSDVVFPSKRARQMTRQTFWHRIKHYAVIAGIDSEKLSPHVL 246 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + GA + G + + YT A Sbjct: 247 RHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER 286 >gi|306836032|ref|ZP_07469022.1| tyrosine recombinase XerD [Corynebacterium accolens ATCC 49726] gi|304568059|gb|EFM43634.1| tyrosine recombinase XerD [Corynebacterium accolens ATCC 49726] Length = 296 Score = 139 bits (351), Expect = 5e-31, Method: Composition-based stats. Identities = 46/282 (16%), Positives = 93/282 (32%), Gaps = 23/282 (8%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSGVESRK 127 + + + ++ N+ ++ + + D D R++T + + ++ + Sbjct: 5 EDIAQTWLNHLAVERGVSANTLSNYRRDIRRYVDWLADNGVQDLRQVTRPMVEAYLKDLR 64 Query: 128 HT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 SSA + L R L K+AV + V + V P + +++ + Sbjct: 65 EKMAVSSANRALIVARGLHKFAVAEGEVDSDVAAEVSPPSTGQHLPETLSVDEVSRLIES 124 Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDG 240 + R E L +G R S+ V + + K V L Sbjct: 125 TPTETPVDLRDRALLEVLYGTGARISEVISLNVDDVATADDVLMLHGKGDKERLVPLGSH 184 Query: 241 FMKLLAMTPIGKETF---------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289 + + + F+N ++ K A ++ ++KS H + Sbjct: 185 ARQAIDAYLVRARPVLGKGKTAALFLNTRGGALSRQSAWSIIKTAAQRSQLDKSISPHTL 244 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIR 330 R AT + GA + G +V + YT AD +R Sbjct: 245 RHSFATHLLEGGADVRTVQELLGHSSVTTTQIYTHVTADSLR 286 >gi|157827055|ref|YP_001496119.1| site-specific tyrosine recombinase XerD [Rickettsia bellii OSU 85-389] gi|157802359|gb|ABV79082.1| site-specific tyrosine recombinase XerD [Rickettsia bellii OSU 85-389] Length = 305 Score = 139 bits (351), Expect = 5e-31, Method: Composition-based stats. Identities = 47/286 (16%), Positives = 105/286 (36%), Gaps = 34/286 (11%) Query: 73 WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRK--ITTKHIRSGVESRKH- 128 IS++ + +L+ NS +S++ + ITT +IR+ VE Sbjct: 2 EFISQFLEMLLAERALSKNSILSYKRDLLDFHNYLAKQKLSELNITTDNIRNWVEYLAEN 61 Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 S + +++++ +++ + + + +NP L+++ PK + + + +D++ + Sbjct: 62 GLQARSINRKISTIKSYYEFLISENHTNLNPLLNIDLPKYQNKLPEILSIDDIKSLLEYC 121 Query: 187 -----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-------QNNIFSIKTQKTGTIIT 234 EG++ L SGLR S+ + + + K Sbjct: 122 SQDISPEGARLNAMIHLLYASGLRVSELVSLKLSDILSNKVSREVKKIFSVLGKGNKERI 181 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQ-------------KMNATQFSIWFKAKATKAG 281 + + + + L + ++ F + M F+I K+ A AG Sbjct: 182 IVINEPAINSLVKYLVVRDNFVNKTKPKNLIYLFPSSAAAGYMTRQNFAILLKSAALYAG 241 Query: 282 V---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + + S H +R A+ + GA + G + + YT Sbjct: 242 LNPEHISPHVLRHSFASHLLEGGADLRVIQELLGHADISTTQIYTH 287 >gi|91205817|ref|YP_538172.1| site-specific tyrosine recombinase XerD [Rickettsia bellii RML369-C] gi|123084556|sp|Q1RHT1|XERD_RICBR RecName: Full=Tyrosine recombinase xerD gi|91069361|gb|ABE05083.1| Tyrosine recombinase XerD [Rickettsia bellii RML369-C] Length = 305 Score = 139 bits (351), Expect = 5e-31, Method: Composition-based stats. Identities = 47/286 (16%), Positives = 105/286 (36%), Gaps = 34/286 (11%) Query: 73 WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRK--ITTKHIRSGVESRKH- 128 IS++ + +L+ NS +S++ + ITT +IR+ VE Sbjct: 2 EFISQFLEMLLAERALSKNSILSYKRDLLDFHNYLAKQKLSELNITTDNIRNWVEYLAEN 61 Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 S + +++++ +++ + + + +NP L+++ PK + + + +D++ + Sbjct: 62 SLQARSINRKISTIKSYYEFLISENHTNLNPLLNIDLPKYQNKLPEILSIDDIKSLLEYC 121 Query: 187 -----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-------QNNIFSIKTQKTGTIIT 234 EG++ L SGLR S+ + + + K Sbjct: 122 SQDISPEGARLNAMIHLLYASGLRVSELVSLKLSDILSNKVSREVKKIFSVLGKGNKERI 181 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQ-------------KMNATQFSIWFKAKATKAG 281 + + + + L + ++ F + M F+I K+ A AG Sbjct: 182 IVINEPAINSLVKYLVVRDNFVNKTKPKNLIYLFPSSAAAGYMTRQNFAILLKSAALYAG 241 Query: 282 V---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + + S H +R A+ + GA + G + + YT Sbjct: 242 LNPEHISPHVLRHSFASHLLEGGADLRVIQELLGHADISTTQIYTH 287 >gi|212710035|ref|ZP_03318163.1| hypothetical protein PROVALCAL_01088 [Providencia alcalifaciens DSM 30120] gi|212687242|gb|EEB46770.1| hypothetical protein PROVALCAL_01088 [Providencia alcalifaciens DSM 30120] Length = 300 Score = 139 bits (350), Expect = 5e-31, Method: Composition-based stats. Identities = 45/284 (15%), Positives = 93/284 (32%), Gaps = 24/284 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRK 127 LI ++ + LA N+ S+ + + R + I + + Sbjct: 9 LIEQFLDTIWLEQDLAENTLASYRNDLQSLDRWLDKQQLHLETVQSIDLQSFLAERIDGG 68 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 + +S+ + L+S+R LF++ R++ + +P + PK + +++ ++ + Sbjct: 69 YKAASSARLLSSIRRLFQYFYREKIRSDDPSAVIAAPKIPQRLPKDLSEKQVEDLLNAPA 128 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 S + + E L GLR S+ + ++ + L + + Sbjct: 129 TEDSLELRDKAMLEVLYACGLRVSELTGLTFSDISLRQGVVRVVGKGDKERLIPLGEEAI 188 Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289 L F + KM F K A A ++ S H + Sbjct: 189 YWLEKYIAEGRPDLLNGKTSDVLFPSKRGTKMTRQTFWHRIKYYAVLANIDGEALSPHVL 248 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 R AT + GA + G + + YT A + Sbjct: 249 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRAL 292 >gi|325577298|ref|ZP_08147782.1| tyrosine recombinase XerD [Haemophilus parainfluenzae ATCC 33392] gi|325160880|gb|EGC73001.1| tyrosine recombinase XerD [Haemophilus parainfluenzae ATCC 33392] Length = 297 Score = 139 bits (350), Expect = 5e-31, Method: Composition-based stats. Identities = 42/280 (15%), Positives = 94/280 (33%), Gaps = 24/280 (8%) Query: 74 LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESR---K 127 L+ + L+ N+ S+ + + + ++ + SR Sbjct: 6 LVDLFLNEYWIEKGLSENTVQSYRLDLTALCDWLDKQNLSLETLDPLDLQQFLGSRLEQG 65 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 + +S + L++MR LF++ R++Y +P + PK + + T++ + + Sbjct: 66 YKATSTARMLSAMRKLFQYLYREKYRTDDPSAVLNSPKLPSRLPKYLTEQQVTDLLNTPD 125 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 + + E L +GLR ++ ++++ ++ V + + Sbjct: 126 VEIPLELRDKAMLELLYATGLRVTELVTLTIENMNLQQGVVRVIGKGNKERIVPMGEEAA 185 Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289 + + F + Q+M F K A A ++ S H + Sbjct: 186 FWVRQFVLYGRPILLNGQSSDVVFPSQRAQQMTRQTFWHRIKHYAVLAEIDTDALSPHVL 245 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + GA + G + + YT A Sbjct: 246 RHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKER 285 >gi|312962849|ref|ZP_07777336.1| integrase/recombinase XerD [Pseudomonas fluorescens WH6] gi|311282876|gb|EFQ61470.1| integrase/recombinase XerD [Pseudomonas fluorescens WH6] Length = 298 Score = 139 bits (350), Expect = 5e-31, Method: Composition-based stats. Identities = 46/291 (15%), Positives = 104/291 (35%), Gaps = 24/291 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRK 127 LI + + L+ N+R ++ S + I + + Sbjct: 8 LIDRFLDALWLEKGLSDNTRQAYRSDLALFNGWLQEKHLELINAGRELILDHLAWRLEQN 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + P S +FL+ +R +++ +R++ + ++P L ++ P+ + ++ D++ + Sbjct: 68 YKPRSTARFLSGVRGFYRYLLREKLITLDPTLQIDMPQLGRPLPKSLSEADVEALLAAPD 127 Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 G + R E L GLR ++ ++ + ++ V + + + Sbjct: 128 LSEAIGQRDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEEAI 187 Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290 + + F + ++M F K +A AG+ K+ H +R Sbjct: 188 VWVERYMREARSELLGGRPSDVLFPSLRGEQMTRQTFWHRIKHQAKVAGIGKTLSPHTLR 247 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 AT + GA + G + + YT A R RL +++ Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQDMHAKHHPR 297 >gi|262280674|ref|ZP_06058457.1| tyrosine recombinase XerD [Acinetobacter calcoaceticus RUH2202] gi|262257574|gb|EEY76309.1| tyrosine recombinase XerD [Acinetobacter calcoaceticus RUH2202] Length = 306 Score = 139 bits (350), Expect = 5e-31, Method: Composition-based stats. Identities = 43/275 (15%), Positives = 89/275 (32%), Gaps = 19/275 (6%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130 + +R +++ ++R ++ S Q + ++ I + +P Sbjct: 20 FLQGFRDYLVAQTVSPHTRNAYLSDLIQCSELHKKNALPQWSSDDIADVLIELTKAGKSP 79 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 S + L+++R +K+ Q+ + NP + PK + ++ED++ + Sbjct: 80 RSIARCLSTLRQFYKFLREQKLRSDNPVATHHSPKIGRALPKDLSEEDVESLIQAPDINT 139 Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLL 245 + R FE L GLR S+ ++ + ++ V L + + Sbjct: 140 ALGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGYLRVTGKGNKERLVPLGQFACEWV 199 Query: 246 AMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 M+ F K A +A + S H +R A Sbjct: 200 ERYLNNARPQLYKSSTDYLFLTQHGGIMSRQNFWYAIKRYALQANIQAELSPHTLRHAFA 259 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 T + GA + G + + YT A Sbjct: 260 THLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR 294 >gi|325124215|gb|ADY83738.1| site-specific tyrosine recombinase [Acinetobacter calcoaceticus PHEA-2] Length = 306 Score = 139 bits (350), Expect = 6e-31, Method: Composition-based stats. Identities = 43/275 (15%), Positives = 88/275 (32%), Gaps = 19/275 (6%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130 + +R +++ ++R ++ S Q + + I + +P Sbjct: 20 FLQGFRDYLVAQTVSPHTRNAYLSDLIQCSELHKKSALPEWKSDDIADVLIELTKAGKSP 79 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 S + L+++R +K+ Q+ + NP + PK + ++ED++ + Sbjct: 80 RSIARCLSALRQFYKFLREQKLRSDNPVATHHSPKIGRALPKDLSEEDVEALIQAPDINT 139 Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLL 245 + R FE L GLR S+ ++ + ++ V L + + Sbjct: 140 ALGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGYLRITGKGNKERLVPLGQFACEWV 199 Query: 246 AMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 M+ F K A +A + S H +R A Sbjct: 200 ERYLQDARPQLYKSSTDYLFLTQHGGIMSRQNFWYAIKRYALQANIQAELSPHTLRHAFA 259 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 T + GA + G + + YT A Sbjct: 260 THLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR 294 >gi|251790996|ref|YP_003005717.1| tyrosine recombinase XerD [Dickeya zeae Ech1591] gi|247539617|gb|ACT08238.1| tyrosine recombinase XerD [Dickeya zeae Ech1591] Length = 299 Score = 139 bits (350), Expect = 6e-31, Method: Composition-based stats. Identities = 47/280 (16%), Positives = 97/280 (34%), Gaps = 24/280 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI-----RSGVESRK 127 LI ++ + +LA N+ S+ + + + + + + + Sbjct: 8 LIEQFLDALWLERNLAENTLSSYRNDLCSLAEWLAHHNSDLLQAQPLDLQGFLAERLEGG 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185 + +S+ + L++MR LF++ R++ A +P + PK + T+ ++ + Sbjct: 68 YKATSSARLLSAMRRLFQYLYREKRRADDPSAPLSSPKLPQRLPKDLTEAQVEALLAAPV 127 Query: 186 --WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 + + E L +GLR S+ + + ++ V L + + Sbjct: 128 TDQPIELRDKAMLELLYATGLRVSELVGLTISDVSLRQGVVRVVGKGNKERLVPLGEEAV 187 Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289 L + F +N Q+M F K AT A ++ S H + Sbjct: 188 YWLEQYLEFSRPWLLNGQTLDVLFPSNRAQQMTRQTFWHRIKHYATLASIDSNKLSPHVL 247 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + GA + G + + YT A Sbjct: 248 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 287 >gi|269959610|ref|ZP_06173991.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269835668|gb|EEZ89746.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 305 Score = 139 bits (350), Expect = 6e-31, Method: Composition-based stats. Identities = 41/280 (14%), Positives = 98/280 (35%), Gaps = 24/280 (8%) Query: 74 LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVE---SRK 127 L+ ++ + L+ N+ S+ + +++ + I+ ++ Sbjct: 14 LVEQFLDAMWMERGLSENTLASYRNDLMKLLAWMEQHSYRLDFISLSGLQEYQSYLVDLD 73 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + +S + L+++R LF++ R++ A +P + PK + ++E + Sbjct: 74 YKQTSRARMLSAIRRLFQYIHREKVRADDPSALLVSPKLPQRLPKDISEEQVDALLDAPD 133 Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM 242 + + E L +GLR ++ ++++ ++ G V + + + Sbjct: 134 PNDPVELRDKAMLELLYATGLRVTELVSLTMENVSLRQGVVRVTGKGGKERLVPMGENAV 193 Query: 243 KLLAMTPIG----------KETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289 + + F + ++M F K A AG++ S H + Sbjct: 194 DWIETFIQQGRSALLGETTSDVVFPSKRARQMTRQTFWHRIKYYAVIAGIDTDQLSPHVL 253 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + GA + G + + YT A Sbjct: 254 RHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER 293 >gi|225174860|ref|ZP_03728857.1| tyrosine recombinase XerD [Dethiobacter alkaliphilus AHT 1] gi|225169500|gb|EEG78297.1| tyrosine recombinase XerD [Dethiobacter alkaliphilus AHT 1] Length = 295 Score = 139 bits (350), Expect = 6e-31, Method: Composition-based stats. Identities = 50/285 (17%), Positives = 105/285 (36%), Gaps = 26/285 (9%) Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGV- 123 TL+ I Y S LA N+ S+ ++++G + + +I + Sbjct: 2 DRTLRDFIH-YL-SVE-KGLAKNTLESYNRDLRTYYTYLKQNGITSLEETSRSNIVGYLL 58 Query: 124 --ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ- 180 ++ S+ + + S+R + + ++ ++ NP +E PK + + R T ++M Sbjct: 59 SLQNMGKATSTLSRNMASIRSFYNYLFQERHLVENPAAELESPKLEKKLPRVLTPQEMDL 118 Query: 181 ---QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----- 232 Q G + + E + +G+R S+ + + + I+ G+ Sbjct: 119 LLEQPDQTQVTGIRDKAMLEVIYATGIRVSELMSLDIGDVNLDAGFIRCLGKGSKERIIP 178 Query: 233 ------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284 V + + G+ + F+N ++ F K AT+AG+ K Sbjct: 179 LGSVAIRNVGRYLNEGRPKLVRQAGEASLFVNQHGNRLTRQGFWKILKKYATRAGITKEI 238 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + H +R AT + GA + G + + YT+ Sbjct: 239 TPHTMRHSFATHLLENGADLRSVQEMLGHADISTTQIYTQVTKHK 283 >gi|193076109|gb|ABO10716.2| site-specific tyrosine recombinase [Acinetobacter baumannii ATCC 17978] Length = 306 Score = 139 bits (350), Expect = 6e-31, Method: Composition-based stats. Identities = 45/275 (16%), Positives = 87/275 (31%), Gaps = 19/275 (6%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130 + +R +++ ++R ++ S Q T+ I + +P Sbjct: 20 FLQGFRDYLVAQTVSPHTRNAYLSDLIQCSELHKKNRLPDWTSDDISDVLIELTKVGKSP 79 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-- 188 S + L+++R +K+ Q+ + NP + PK + ++ED++ Sbjct: 80 RSIARCLSALRQFYKFLREQKLRSDNPVATHHSPKIGRALPKDLSEEDVEALIQAPDITT 139 Query: 189 --GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLL 245 G + R FE L GLR S+ ++ + ++ V L + Sbjct: 140 ALGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGYLRITGKGNKERLVPLGQYACDWV 199 Query: 246 AMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 M+ F K A +A + S H +R A Sbjct: 200 ERYLNEARPQLYKSSTDYLFLTQHGGIMSRQNFWYAIKHYALQANIQAELSPHTLRHAFA 259 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 T + GA + G + + YT A Sbjct: 260 THLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR 294 >gi|294501141|ref|YP_003564841.1| tyrosine recombinase XerD [Bacillus megaterium QM B1551] gi|294351078|gb|ADE71407.1| tyrosine recombinase XerD [Bacillus megaterium QM B1551] Length = 297 Score = 139 bits (350), Expect = 6e-31, Method: Composition-based stats. Identities = 40/272 (14%), Positives = 98/272 (36%), Gaps = 26/272 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHI---RSGVESRKHTPSSAIQFL 137 LA N+ S+E + + + ++T HI + ++ + + + + Sbjct: 16 RGLAKNTIDSYERDLKKYAQYLEHVEQLKSFNEVTRLHIVNFLKYLSDQQKSSKTIARHV 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPR 193 S R ++ +R++ +P + ++ P+ + + + E+++ + + + + + Sbjct: 76 ASTRSFHQFLLREKAADTDPSVHIDTPQLERKLPKVLNAEEVEALLNVFDTSTPFGIRDK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE-----------LPDGF 241 E L +G+R S+ + + I+ V Sbjct: 136 AMLELLYATGIRVSELVNLNIDDAHLTMGFIRCIGKGNKERIVPIGRLATEAIEEYLQHS 195 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 +L + F+N+ +++ F K A++A + K + H +R AT + Sbjct: 196 RSVLTKQKEQDKALFVNHHGRRLTRQGFWKILKKLASEAKIEKELTPHTLRHSFATHLLE 255 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331 GA + G + + YT + RL Sbjct: 256 NGADLRAVQEMLGHADISTTQIYTHVT-KARL 286 >gi|238792839|ref|ZP_04636470.1| Tyrosine recombinase xerD [Yersinia intermedia ATCC 29909] gi|238727947|gb|EEQ19470.1| Tyrosine recombinase xerD [Yersinia intermedia ATCC 29909] Length = 299 Score = 139 bits (350), Expect = 6e-31, Method: Composition-based stats. Identities = 46/280 (16%), Positives = 96/280 (34%), Gaps = 24/280 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQI---IRKSGDFDYR--KITTKHIRSGVESRK 127 LI ++ + +LA N+ S+ + + G R + + Sbjct: 8 LIEQFLDALWLERNLAENTLASYRLDLHALTGWLEHHGSDLLRAGSQDLQSFLAERIEGG 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + +S+ + L++MR LF++ R++ +P + PK + ++ + + + + Sbjct: 68 YKATSSARLLSAMRRLFQYLYREKLREDDPTALLSSPKLPQRLPKDLSEAQVDRLLNSPN 127 Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 + + E L +GLR S+ + + ++ V L + + Sbjct: 128 VDIPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKERLVPLGEEAV 187 Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289 + + F +N Q+M F K A AG++ S H + Sbjct: 188 YWIENYMEHGRPWLINGQSLDVLFPSNRSQQMTRQTFWHRIKHYAILAGIDSERLSPHVL 247 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + GA + G + + YT A Sbjct: 248 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 287 >gi|116494854|ref|YP_806588.1| integrase [Lactobacillus casei ATCC 334] gi|191638361|ref|YP_001987527.1| Tyrosine recombinase xerD [Lactobacillus casei BL23] gi|227535149|ref|ZP_03965198.1| site-specific DNA tyrosine recombinase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239631553|ref|ZP_04674584.1| tyrosine recombinase xerD [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301066416|ref|YP_003788439.1| integrase [Lactobacillus casei str. Zhang] gi|116105004|gb|ABJ70146.1| tyrosine recombinase XerD subunit [Lactobacillus casei ATCC 334] gi|190712663|emb|CAQ66669.1| Tyrosine recombinase xerD [Lactobacillus casei BL23] gi|227187194|gb|EEI67261.1| site-specific DNA tyrosine recombinase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239526018|gb|EEQ65019.1| tyrosine recombinase xerD [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300438823|gb|ADK18589.1| Integrase [Lactobacillus casei str. Zhang] gi|327382389|gb|AEA53865.1| hypothetical protein LC2W_1532 [Lactobacillus casei LC2W] gi|327385590|gb|AEA57064.1| hypothetical protein LCBD_1567 [Lactobacillus casei BD-II] Length = 293 Score = 139 bits (350), Expect = 6e-31, Method: Composition-based stats. Identities = 44/270 (16%), Positives = 98/270 (36%), Gaps = 21/270 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH--IRSGVESRKHT--PSSAIQFLTSM 140 LA ++ S++ R + I+S ++ + T P+S + ++++ Sbjct: 16 RGLAKATQTSYQQDLITFSAWLAARKRRTFPEEFGTIQSFLKEQNATKAPASVSRMISAL 75 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFWSEGSQPRLAF 196 R +++ +R+ ++ +P ++ PKR + ++ M + + G + R F Sbjct: 76 RKFYRFLLREGAISADPMTKIDTPKRAQHLPATLSSQEVDALMAKPDTDKPLGLRDRAIF 135 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMT------- 248 E + +GLR S+ + L + T K V + + + Sbjct: 136 ELMYATGLRVSEVVDLRLDQLHLAMNLLQVTGKGDKERLVPISPQATQWVDRYLQEARPK 195 Query: 249 ---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303 + + F+N M KA G+ K + H +R AT + GA Sbjct: 196 LLKRVQPKNVFVNFHGGPMTRQGIWKNLKAYIASIGIEKDVTPHTLRHSFATRLLENGAD 255 Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGI 333 + G + + YT +++ + + Sbjct: 256 LRVVQELLGHSDISTTQIYTHLSNQHLVAV 285 >gi|313901171|ref|ZP_07834659.1| tyrosine recombinase XerC [Clostridium sp. HGF2] gi|312954129|gb|EFR35809.1| tyrosine recombinase XerC [Clostridium sp. HGF2] Length = 302 Score = 139 bits (350), Expect = 6e-31, Method: Composition-based stats. Identities = 41/295 (13%), Positives = 98/295 (33%), Gaps = 29/295 (9%) Query: 72 KWLISEYRKSAHWGSL-AVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRK 127 + L++ + + + +V++R +++ + I G + + + + + S + Sbjct: 2 EELLARFLQYMDSLNSGSVHTRAAYQRDIREFISFLQEEGIEELQDADRIIVMNYIASLR 61 Query: 128 HTP--------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 P S+ + L+S+R +++ + NP L + PKR ++M Sbjct: 62 EKPGVSGEMKNSTIARKLSSLRSFYRYLNEYVGITQNPFLYFKTPKRAKRIPEFLFYDEM 121 Query: 180 QQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIIT 234 F S + + + R FE + GLR S++ + + + + Sbjct: 122 DTFLSSFDLDTPDGLRDRAMFELMYACGLRVSEAASLRLYDIDLHDRILTIHGKGNKQRI 181 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKM---------NATQFSIWFKAKATKAGV--N 283 V +LL ++ + + + A + + Sbjct: 182 VPFYALAGELLEHYLQEVRPQWMKEEHDIVFINQRGKGLTTRGIQYRMQLAADTCSLSVH 241 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337 H R AT D GA + G ++ + Y +R++ ++ Sbjct: 242 VHPHMFRHSFATHLLDNGADLRVVQELLGHASLSTTQVYVHVTQERLKKAYTHAH 296 >gi|260775484|ref|ZP_05884381.1| site-specific recombinase XerD [Vibrio coralliilyticus ATCC BAA-450] gi|260608665|gb|EEX34830.1| site-specific recombinase XerD [Vibrio coralliilyticus ATCC BAA-450] Length = 302 Score = 139 bits (350), Expect = 6e-31, Method: Composition-based stats. Identities = 40/279 (14%), Positives = 100/279 (35%), Gaps = 24/279 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKHTP- 130 + ++ + L+ N+ S+ + ++++ ++ I+ ++ Sbjct: 12 VEQFLDAMWLERGLSENTLASYRNDLSKLLQWMTENNYRLDFISLSGLQDYQSWLMDQGY 71 Query: 131 --SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +S + L+++R LF++ R++ A +P + PK + ++E ++ + Sbjct: 72 KQTSRARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPKRLPKDLSEEQVEALLNAPDP 131 Query: 189 G----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMK 243 + + E L +GLR ++ ++++ ++ G V + + + Sbjct: 132 NDAMELRDKAMLELLYATGLRVTELVSLTMENVSLRQGVVRVTGKGGKERLVPMGENAVD 191 Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290 + + F + ++M F K A AG++ S H +R Sbjct: 192 WIETFIQQGRSELLGETTSDVVFPSKRARQMTRQTFWYRIKHYAVLAGIDTEMLSPHVLR 251 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + GA + G + + YT A Sbjct: 252 HAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER 290 >gi|311739368|ref|ZP_07713203.1| tyrosine recombinase XerD [Corynebacterium pseudogenitalium ATCC 33035] gi|311305184|gb|EFQ81252.1| tyrosine recombinase XerD [Corynebacterium pseudogenitalium ATCC 33035] Length = 296 Score = 139 bits (350), Expect = 6e-31, Method: Composition-based stats. Identities = 50/283 (17%), Positives = 98/283 (34%), Gaps = 23/283 (8%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSGVESR 126 L+ + + ++ N+ ++ + + GD D R +T + + ++ Sbjct: 4 LENIAQTWLNHLAVERGVSANTLSNYRRDVRRYLSWLGDNGVEDLRSVTRPMVEAYLKDL 63 Query: 127 K--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + SSA + L R L K+AV + V ++ + V P + + +++ Sbjct: 64 RSHMAVSSANRALIVARGLHKFAVSEGVVDVDVAVEVTPPSTGQQLPETLSVDEVTALIE 123 Query: 185 FWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239 + + R E L +G R S+ V + + I+ K V + Sbjct: 124 ATPTETPVDVRDRALLEMLYGTGARISEIVSLNVDDVSSAQEVIRLRGKGDKERIVPVGS 183 Query: 240 GFMKLLAMTPIGKETF---------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHG 288 + L + F+N ++ K A +A + KS H Sbjct: 184 HARQALDAYLVRARPALSKGKTPALFLNTRGGALSRQSAWTVLKTAAQRAQLGKSISPHT 243 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIR 330 +R AT + GA + G +V + YT AD +R Sbjct: 244 LRHSFATHLLEGGADVRTVQELLGHSSVTTTQIYTHVTADSLR 286 >gi|222151393|ref|YP_002560549.1| site-specific tyrosine recombinase XerD [Macrococcus caseolyticus JCSC5402] gi|222120518|dbj|BAH17853.1| site-specific tyrosine recombinase XerD [Macrococcus caseolyticus JCSC5402] Length = 295 Score = 139 bits (350), Expect = 6e-31, Method: Composition-based stats. Identities = 47/276 (17%), Positives = 95/276 (34%), Gaps = 24/276 (8%) Query: 73 WLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGVESRKH 128 +I E+ L+ N+ ++ + + + I I + K Sbjct: 3 EIIDEFLHFIMIEKGLSENTIAAYRRDLNHYKKFLEESHIGSIDNIDRFTISLFLGKLKD 62 Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + + + S+R ++A+R++Y +P + +E PK + + T E++ F S Sbjct: 63 DGKSSKTLARVTASVRGFHQFALREKYAVKDPTIILEPPKFERKLPGILTVEEVDIFLSS 122 Query: 186 WSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDG 240 G + + E L +G+R S+ V + + F T K V + Sbjct: 123 PDTSKVTGRRDQAMLELLYATGMRVSELINLDVADVNTIMGFVKVTGKGNKERIVPIGTH 182 Query: 241 FMKLLAMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKAGV--NKSAHG 288 +KL+ + N ++M F K ++G+ + H Sbjct: 183 MIKLMDAYIANTRHKMLKKEMTDSLFLNFHGKRMTRQGFWKIMKQVQAESGIQKKLTPHT 242 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT + GA + G + + YT Sbjct: 243 LRHSFATHLLENGADLRAVQEMLGHADISSTQLYTH 278 >gi|270308039|ref|YP_003330097.1| site-specific recombinase [Dehalococcoides sp. VS] gi|270153931|gb|ACZ61769.1| site-specific recombinase [Dehalococcoides sp. VS] Length = 307 Score = 139 bits (350), Expect = 6e-31, Method: Composition-based stats. Identities = 42/281 (14%), Positives = 99/281 (35%), Gaps = 25/281 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGVESRKHTP 130 ++Y + +++ + ++ + + + ++ +R + S Sbjct: 5 FNKYLEYLSVEKNVSAYTLRNYRTDLIGFVNYLIEKKVSSFDRVDRYILRDYMSSLIAKG 64 Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 S + L+++R +++ +R+ + NP L+ P+ T ++ + Sbjct: 65 IVKGSIARKLSAVRSFYRYLMREGLIQKNPTLNASSPRLDKRLPEFLTTAEVSKLLRMPD 124 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 +G + + E L SGLR S+ + +++L + I+ V + + Sbjct: 125 SSTPQGLRDKAFMELLYASGLRVSELVKLDIENLDLHSHQIRVWGKGSKERIVLMGLPAI 184 Query: 243 KLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290 + + F+N + +++A F A +AG+ K H +R Sbjct: 185 QSIQTYLNLGRPLLKGKRNTPALFLNPNGGRLSARSFQERLDKLAHQAGIEKHVHPHMLR 244 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330 AT D GA + G + + YT + R Sbjct: 245 HTFATHLLDGGADLRVVQELLGHSNLSTTQIYTHVTKSQAR 285 >gi|227824418|ref|ZP_03989250.1| recombinase [Acidaminococcus sp. D21] gi|226904917|gb|EEH90835.1| recombinase [Acidaminococcus sp. D21] Length = 298 Score = 139 bits (350), Expect = 7e-31, Method: Composition-based stats. Identities = 44/282 (15%), Positives = 93/282 (32%), Gaps = 24/282 (8%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HT 129 L +Y LA N+R S+ ++I+ I + + K + Sbjct: 12 ALFMDYLTVEM--GLARNTRESYGRDLRLFA-VWVKKPIKEISRDDILTYMSVLKAQNYA 68 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 +S+ + L +++ F++ + + ++PC VE R + + +++ + Sbjct: 69 VTSSARKLAALKAFFRFMTAEGTIEVDPCEVVESETRGMVLPKVLSVDEVNRLFEAPDLD 128 Query: 190 S----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKL 244 + + R E + +G+R S+ V + + G + L ++ Sbjct: 129 TPEGYRDRTMLEVMYATGMRVSELLALKVGSVNLASHYVIAYGKGAKERLIPLGHYAIEY 188 Query: 245 LAMTPIGKETFFINNDKQK-----------MNATQFSIWFKAKATKAGVNK--SAHGVRK 291 L F+ ++ M +F K K + K + H +R Sbjct: 189 LKEYLSRVRPHFVKENRPCDDLFLTIRGTGMTRQRFWQLIKNYGLKVHIAKSLTPHILRH 248 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 AT D GA + G + + YT + I Sbjct: 249 SFATHMLDNGADLRTVQELLGHSDISTTQIYTHLTNHRLKAI 290 >gi|330828608|ref|YP_004391560.1| Tyrosine recombinase XerD [Aeromonas veronii B565] gi|328803744|gb|AEB48943.1| Tyrosine recombinase XerD [Aeromonas veronii B565] Length = 303 Score = 139 bits (350), Expect = 7e-31, Method: Composition-based stats. Identities = 47/283 (16%), Positives = 99/283 (34%), Gaps = 23/283 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD----FDYRKITT-KHIRSGVESRK 127 LI + + L+ N+ S+ S ++ + + +H + + Sbjct: 13 LIEPFLDALWLERGLSDNTVSSYRSDLEKFSLWLDEQGSSLLLAGMDEIQHYLAWRVDHQ 72 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 SS +FL+++R +++ R++ + +P + +E PK + ++ +++ S Sbjct: 73 FAASSTARFLSALRRFYQYLNREKLRSDDPTVLLEGPKLPKKLPSDLSETEVEALLSAPL 132 Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 + + E L +GLR S+ +H+ ++ V + + M Sbjct: 133 VDDPLELRDKAMLELLYATGLRVSELVGLTAEHVSLRQGLVRVVGKGNKERLVPMGEEAM 192 Query: 243 KLLAMTPIGKET----------FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290 L T F + + M F K A +AG+ S H +R Sbjct: 193 HWLERYYREARTLLLGGTSSDVVFPSKQARMMTRQTFWHRIKLYALRAGINGELSPHTLR 252 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 AT + GA + G + + YT A+ + Sbjct: 253 HAFATHLLNHGADLRVVQMLLGHADLSTTQIYTHVANERLKAL 295 >gi|15615028|ref|NP_243331.1| integrase/recombinase [Bacillus halodurans C-125] gi|34223073|sp|Q9KA25|XERC_BACHD RecName: Full=Tyrosine recombinase xerC gi|10175085|dbj|BAB06184.1| integrase/recombinase [Bacillus halodurans C-125] Length = 303 Score = 139 bits (350), Expect = 7e-31, Method: Composition-based stats. Identities = 46/288 (15%), Positives = 97/288 (33%), Gaps = 29/288 (10%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGVE--- 124 +S + + + ++ +++E ++ +R + Sbjct: 6 DQWVSAFLLYLKMEKNHSPHTIVNYELDLRHFRDFMEQQSIPSFAAVSYAFVRHYLTVLY 65 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 +++ S+ + L+++R +++ VR+++V NP L PK + +E+M+Q Sbjct: 66 EQEYARSTVSRKLSTLRSFYQFLVREKWVMENPFLLAHTPKGVKKLPSFLYEEEMEQLLD 125 Query: 185 FWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD 239 + S + R FE + SGLR S+ C +Q + + K V + Sbjct: 126 ALNGDSPLQLRNRALFETIYASGLRVSECCGLKLQDVDLSIGTVFVFGKGRKERYVPIGS 185 Query: 240 GFMKLLAMTPIGKETF--------------FINNDKQKMNATQFSIWFKAKATKAGV--N 283 + F+N + +A + Sbjct: 186 FACDAIQEYIENGREKLLKKSKSVDLPGDLFLNYRGGPLTERGVRKILHQALDQAALSTR 245 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330 S H +R AT + GA + G + + + YT DR+R Sbjct: 246 VSPHSLRHSFATHLLNNGADLRVVQDLLGHENLSTTQVYTHVTKDRLR 293 >gi|259046718|ref|ZP_05737119.1| integrase/recombinase XerC [Granulicatella adiacens ATCC 49175] gi|259036614|gb|EEW37869.1| integrase/recombinase XerC [Granulicatella adiacens ATCC 49175] Length = 318 Score = 139 bits (350), Expect = 7e-31, Method: Composition-based stats. Identities = 40/281 (14%), Positives = 89/281 (31%), Gaps = 26/281 (9%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHIRSGVESRK 127 + ++ + + ++E + + + + Sbjct: 6 MQDFLAYIKVERRYSPETIHAYERDIQHFCDYLTEVPITSWNDVSVVDVRIYLGVLHREN 65 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS--- 184 + SS +FL+S+R + + V ++ V NP SV K K + ++++++F + Sbjct: 66 YNRSSISRFLSSLRSFYHFLVERKAVESNPFASVSYKKGKMLLPEFFYEDEIEKFINSID 125 Query: 185 -FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFM 242 S + + E L +G+R S+ ++ L + I K V + D Sbjct: 126 GNQSLDQRNKALVEVLYATGMRVSELTNLTLEQLDLDNSIILVIGKGSKERYVPIGDFAR 185 Query: 243 KLLAMT------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHG 288 L F+N+ + + ++G+ H Sbjct: 186 TALETYLEEGRKDLMAKERKEHFFVFVNHLGDPLTTNGVRYILEKLIQESGLTLKIHPHM 245 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R AT + GA + G ++ + YT Sbjct: 246 LRHTFATHLLNNGADMRTVQELLGHVSLSSTQIYTHVTKEA 286 >gi|222530499|ref|YP_002574381.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725] gi|222457346|gb|ACM61608.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725] Length = 373 Score = 139 bits (350), Expect = 7e-31, Method: Composition-based stats. Identities = 47/360 (13%), Positives = 106/360 (29%), Gaps = 47/360 (13%) Query: 17 RHGKIIYYFRK-----GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + GK Y G ++ L AL + + T Sbjct: 7 KKGKKYYIVVDIGVVDGKRKQKWLGGFETKAEAEE---ALPRILNIIYQNKNKLLEQKTF 63 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE----SR 126 L+ + + +++++ S+ S I GD + K+T ++ + + Sbjct: 64 GELLDLWLNTVAKNRVSLSTFQSYSSSIALHIKPFLGDVELNKLTAMDLQKYYQHITGEK 123 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + + A+ + +AVR + NP V+ P++++ W ++ +++ Sbjct: 124 GLSSTLALYHHRIIHQALDYAVRMNMIEKNPADYVDPPRKRSYQPSIWDEDTIKRALD-I 182 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII------------- 233 + + +Y+G+R + + I KT I Sbjct: 183 FRNTNIWVPVLLAIYTGMRIGEITALKWDDINLEQGYIVVSKTLMKINRQLYIKEKGENK 242 Query: 234 ------------------TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275 + + + L + D + + + F+ Sbjct: 243 SSYRIVAISSNVIEELKQWRRKQEQYKEKLKELYHNEGFVCTFEDGRVQDPKYITKVFQK 302 Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGI 333 K G+ K H +R A++ G + G T+ Y+ D R + Sbjct: 303 TIEKHGLPKIRFHDLRHTHASLLLKHGVDPKHISDRLGHSTITTTLNIYSHVFDEKRRKV 362 >gi|149192204|ref|ZP_01870421.1| site-specific tyrosine recombinase XerD [Vibrio shilonii AK1] gi|148833962|gb|EDL50982.1| site-specific tyrosine recombinase XerD [Vibrio shilonii AK1] Length = 304 Score = 139 bits (350), Expect = 7e-31, Method: Composition-based stats. Identities = 40/280 (14%), Positives = 97/280 (34%), Gaps = 24/280 (8%) Query: 74 LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKHTP 130 L+ ++ S L+ N+ S+ + ++++ ++ I+ ++ Sbjct: 13 LVEQFLDSMWMERGLSENTLSSYRNDLFKLLKWMNEHNYRLDFISLSGLQEYQTWLMDQN 72 Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 SS + L+++R LF++ R++ + +P + PK + T++ + Sbjct: 73 YQQSSRARMLSAIRRLFQYLHREKLRSDDPTALLVSPKLPKRLPKDLTEDQVTALLEAPD 132 Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 + + E L +GLR ++ ++++ ++ V + + + Sbjct: 133 PNDPIELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVIGKGNKERLVPMGENAI 192 Query: 243 KLLAMTPIGKET----------FFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289 ++ F + ++M F K A A ++ S H + Sbjct: 193 DWISEFIEKGRPALLGDKTSDVVFPSKRARQMTRQTFWHRIKFYAVLADIDTELLSPHVL 252 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + GA + G + + YT A Sbjct: 253 RHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER 292 >gi|86147402|ref|ZP_01065715.1| tyrosine recombinase [Vibrio sp. MED222] gi|85834830|gb|EAQ52975.1| tyrosine recombinase [Vibrio sp. MED222] Length = 304 Score = 139 bits (350), Expect = 7e-31, Method: Composition-based stats. Identities = 40/280 (14%), Positives = 98/280 (35%), Gaps = 24/280 (8%) Query: 74 LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRK--- 127 L+ ++ + L+ N+ +S+ + +++ ++ I+ ++ Sbjct: 13 LVEQFLDAMWMERGLSENTLVSYRTDLSKLLTWMEKNNYRLDFISLSGLQDYQGWLADAD 72 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +S + L+++R LF++ R++ A +P + PK + ++E + Sbjct: 73 FKQTSRARMLSAIRRLFQYLHREKVRADDPSALLISPKLPKRLPKDLSEEQVDSLLEAPD 132 Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM 242 + + E L +GLR ++ ++++ ++ G V + + + Sbjct: 133 PNDPIELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVIGKGGKERLVPMGENAV 192 Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289 + F + ++M F K + AG++ S H + Sbjct: 193 DWIETFIEQGRPQLLGDNSSDVVFPSKRAKQMTRQTFWYRIKHYSVIAGIDTDLLSPHVL 252 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + GA + G + + YT A Sbjct: 253 RHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER 292 >gi|238752994|ref|ZP_04614453.1| Tyrosine recombinase xerD [Yersinia rohdei ATCC 43380] gi|238708782|gb|EEQ01041.1| Tyrosine recombinase xerD [Yersinia rohdei ATCC 43380] Length = 299 Score = 139 bits (349), Expect = 7e-31, Method: Composition-based stats. Identities = 44/280 (15%), Positives = 92/280 (32%), Gaps = 24/280 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRK 127 LI ++ + +LA N+ S+ + + + Sbjct: 8 LIEQFLDALWLERNLAENTLASYRLDLHALTGWLEHNGSDLLRAGSQDLQSFLAERIEGG 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + +S+ + L++MR LF++ R++ +P + PK + ++ + + + Sbjct: 68 YKATSSARLLSAMRRLFQYLYREKLREDDPTALLSSPKLPQRLPKDLSEAQVDALLNSPN 127 Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 + + E L +GLR S+ + + ++ V L + + Sbjct: 128 VDIPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKERLVPLGEEAV 187 Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289 + + F +N Q+M F K A AG++ S H + Sbjct: 188 YWIENYMEHGRPWLINGHSLDVLFPSNRSQQMTRQTFWHRIKHYAILAGIDSERLSPHVL 247 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + GA + G + + YT A Sbjct: 248 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 287 >gi|253997434|ref|YP_003049498.1| tyrosine recombinase XerD [Methylotenera mobilis JLW8] gi|253984113|gb|ACT48971.1| tyrosine recombinase XerD [Methylotenera mobilis JLW8] Length = 302 Score = 139 bits (349), Expect = 7e-31, Method: Composition-based stats. Identities = 50/282 (17%), Positives = 97/282 (34%), Gaps = 23/282 (8%) Query: 72 KWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKH 128 I + + L+ N+ S+ + I ++ + + Sbjct: 11 AAAIDSFLDAIWLEDGLSKNTLDSYRLDLTAFAIWASSQHKQLLTIDKADVQQYLAVKFP 70 Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 P S + + S+R +++ +R+ +AI+P L +E PK + +E++ + Sbjct: 71 LSKPRSIGRLIASLRRFYRYNLRENLIAIDPTLQIESPKLPRSLPKSLNEEEVMALLNAP 130 Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 + G + + E L SGLR S+ + + ++ V + + Sbjct: 131 NVDDVVGLRDKAMLELLYASGLRVSELVSIKTSEVSMSDSVVRVTGKGSKTRLVPMGENA 190 Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 ++ ++ F+ N M F K A AG+ K S H + Sbjct: 191 VEWISHYLKAARPQILQNRLSDALFVTNRGDAMTRQTFWHMIKRYALLAGITKHMSPHVL 250 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 R AT + GA + G + + YT A R RL Sbjct: 251 RHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTYVA-RERL 291 >gi|238796542|ref|ZP_04640049.1| Tyrosine recombinase xerD [Yersinia mollaretii ATCC 43969] gi|238719520|gb|EEQ11329.1| Tyrosine recombinase xerD [Yersinia mollaretii ATCC 43969] Length = 299 Score = 139 bits (349), Expect = 7e-31, Method: Composition-based stats. Identities = 44/280 (15%), Positives = 94/280 (33%), Gaps = 24/280 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRK 127 LI ++ + +LA N+ S+ + + + + Sbjct: 8 LIEQFLDALWLERNLAENTLASYRLDLHALTGWLDHHGSDLLRAGSQELQSFLAERIEGG 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + +S+ + L++MR LF++ R++ +P ++ PK + ++ + + + Sbjct: 68 YKATSSARLLSAMRRLFQYLYREKLRDDDPTAALSSPKLPQRLPKDLSEAQVDALLNAPN 127 Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 + + E L +GLR S+ + + ++ V L + + Sbjct: 128 VDIPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKERLVPLGEEAV 187 Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289 + + F +N Q+M F K A AG++ S H + Sbjct: 188 YWIENYMEHGRPWLINGQALDVLFPSNRSQQMTRQTFWHRIKHYAILAGIDSERLSPHVL 247 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + GA + G + + YT A Sbjct: 248 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 287 >gi|328948447|ref|YP_004365784.1| Tyrosine recombinase xerC [Treponema succinifaciens DSM 2489] gi|328448771|gb|AEB14487.1| Tyrosine recombinase xerC [Treponema succinifaciens DSM 2489] Length = 307 Score = 139 bits (349), Expect = 7e-31, Method: Composition-based stats. Identities = 48/286 (16%), Positives = 95/286 (33%), Gaps = 28/286 (9%) Query: 68 PTTLKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIR---SG 122 P TL E+ L+ N+ +S+ G D +T + +R Sbjct: 2 PETLFECSEEFLIYLGSVRGLSENTLLSYRQDLAHFCEFFGNDKSAEGLTLEDLRLFVGY 61 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + RK++ +S + ++++R LF + + Y++ N ++ ++ R ++ ++ Sbjct: 62 LSRRKYSVASINRIISAVRGLFAYLKKFGYISKNVSYELKCLRQPKTLPRFMSQVEIDNV 121 Query: 183 KSFWSE-----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVE 236 + S+ + FE + SG R S+ Q ++ S I T K V Sbjct: 122 CRQPEKKELLWASRDKAIFEMMYSSGCRVSELASLKFQDFTSDFRSAIVTGKGKKDRRVY 181 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKM---------------NATQFSIWFKAK--ATK 279 L + ++ F +K +A Sbjct: 182 FEQDARNSLMLYLKERKARFPQAEKGCAGEVSRIFLSQKGTALSAHGIWYIVSRYTGIEG 241 Query: 280 AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 G + S H R AT ++GA + G + + YT Sbjct: 242 TGSHVSPHAFRHTFATGMLNSGADIRIVQELLGHSNISTTQRYTHV 287 >gi|255325630|ref|ZP_05366727.1| tyrosine recombinase XerD [Corynebacterium tuberculostearicum SK141] gi|255297240|gb|EET76560.1| tyrosine recombinase XerD [Corynebacterium tuberculostearicum SK141] Length = 296 Score = 139 bits (349), Expect = 7e-31, Method: Composition-based stats. Identities = 50/283 (17%), Positives = 97/283 (34%), Gaps = 23/283 (8%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSGVESR 126 L+ + + ++ N+ ++ + + GD D R +T + + ++ Sbjct: 4 LENIAQTWLNHLAVERGVSANTLSNYRRDVRRYLAWLGDNGVEDLRSVTRPMVEAYLKDL 63 Query: 127 K--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + SSA + L R L K+AV + V ++ + V P + +++ Sbjct: 64 RSHMAVSSANRALIVARGLHKFAVSEGVVDVDVAVEVTPPSTGQHLPETLSVDEVTALIE 123 Query: 185 FWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239 + + R E L +G R S+ V + + I+ K V + Sbjct: 124 ATPTETPVDVRDRALLEMLYGTGARISEIVSLNVDDVSSAQEVIRLRGKGDKERIVPVGS 183 Query: 240 GFMKLLAMTPIGKETF---------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHG 288 + L + F+N ++ K A +A + KS H Sbjct: 184 HARQALDAYLVRARPALSKGKTPALFLNTRGGALSRQSAWTVLKTAAQRAQLGKSISPHT 243 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIR 330 +R AT + GA + G +V + YT AD +R Sbjct: 244 LRHSFATHLLEGGADVRTVQELLGHSSVTTTQIYTHVTADSLR 286 >gi|218708546|ref|YP_002416167.1| site-specific tyrosine recombinase XerD [Vibrio splendidus LGP32] gi|218321565|emb|CAV17517.1| Tyrosine recombinase xerD [Vibrio splendidus LGP32] Length = 320 Score = 139 bits (349), Expect = 7e-31, Method: Composition-based stats. Identities = 40/280 (14%), Positives = 98/280 (35%), Gaps = 24/280 (8%) Query: 74 LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRK--- 127 L+ ++ + L+ N+ +S+ + +++ ++ I+ ++ Sbjct: 29 LVEQFLDAMWMERGLSENTLVSYRTDLSKLLTWMEKNNYRLDFISLSGLQDYQGWLADAD 88 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +S + L+++R LF++ R++ A +P + PK + ++E + Sbjct: 89 FKQTSRARMLSAIRRLFQYLHREKVRADDPSALLISPKLPKRLPKDLSEEQVDSLLEAPD 148 Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM 242 + + E L +GLR ++ ++++ ++ G V + + + Sbjct: 149 PNDPIELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVIGKGGKERLVPMGENAV 208 Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289 + F + ++M F K + AG++ S H + Sbjct: 209 DWIETFIEQGRPQLLGDNSSDVVFPSKRAKQMTRQTFWYRIKHYSVIAGIDTELLSPHVL 268 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + GA + G + + YT A Sbjct: 269 RHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER 308 >gi|85707546|ref|ZP_01038619.1| Phage related integrase [Roseovarius sp. 217] gi|85667933|gb|EAQ22821.1| Phage related integrase [Roseovarius sp. 217] Length = 339 Score = 139 bits (349), Expect = 7e-31, Method: Composition-based stats. Identities = 71/339 (20%), Positives = 126/339 (37%), Gaps = 18/339 (5%) Query: 9 PFVTKERTRHGKIIYYFRKGHG---RRIRLPY-PHESTFIPAYMSALTGSTPKREYINSP 64 P++ + + G+ YFR G R RLP P F+ AY + +G + Sbjct: 7 PYLEFKTVK-GRDYIYFRLDRGSKVTRHRLPSNPDSEEFMQAYWAIRSGRKKVQ------ 59 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 TT L++E+ K+ + A +R ++ + + I K+G+ D ++ K + Sbjct: 60 --SKTTWHNLVTEFYKTPGYLGKAKGTRENYRRHCEAIREKNGEKDVQRFKRKDALAVQR 117 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + + T S A + + + +L K AV E++ NP + + + P K + Sbjct: 118 ALQDTWSKANERIAVLSILCKLAVDLEWIDRNPVVDIPKLSGGEYEPWPDDKLTAYERYC 177 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 + + R +E + +G R D S+ KTGT +T+ P Sbjct: 178 DRHDLTDARTIYELCIGTGQRIGDCVAMRWDDFDGEFMSVVQDKTGTKLTIYCPARLQTY 237 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-----AHGVRKFSATISAD 299 L P N Q M + T + HG R +A +D Sbjct: 238 LCTLPRKGRHIMAKNLTQPMGKRAAQKAVEGVRTALDIMHGEARLVPHGWRYTAAVQLSD 297 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338 AG E+ A G KT++ Y D+ + ++ Sbjct: 298 AGCDDAEIQAVTGHKTMEMVRKYRARRDQKAASKRAQQK 336 >gi|327440847|dbj|BAK17212.1| site-specific recombinase XerD [Solibacillus silvestris StLB046] Length = 300 Score = 139 bits (349), Expect = 7e-31, Method: Composition-based stats. Identities = 44/285 (15%), Positives = 104/285 (36%), Gaps = 26/285 (9%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG----DFDYRKITTKHIRSGVES 125 LK I +Y L+ N+ S++ R ++ + +HI ++S Sbjct: 4 LKDSIEDYLHFIKVERQLSDNTLQSYKRDLVAYARHIHYEQQIMEFDNVMREHILLYLDS 63 Query: 126 RK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + + + + ++S+R ++ +R++ +P + +E PK++ + + E++ Sbjct: 64 LRSVGKSSKTISRQISSIRSFHQFLLREKVTNQDPTVHLEMPKKELSLPKVLSIEEIDAL 123 Query: 183 KSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TII---- 233 + +G++ E + SG+R S+ ++ + + ++ G Sbjct: 124 LTAPSVEKPQGTRDIAILEMMYGSGMRISELIDLNLEDVHLTMGFVRVFGKGGKERIIPL 183 Query: 234 -------TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284 + + L + + FFI ++ K A AG++K Sbjct: 184 GRSAIQACINYLEQARPQLLGDALKNDAFFITQRGKRFTRQGCWKIIKEHAATAGISKEI 243 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + H +R AT + GA + G + + YT + Sbjct: 244 TPHVLRHSFATHLIENGADLRAVQELLGHADISTTQIYTHVSKTR 288 >gi|295706488|ref|YP_003599563.1| tyrosine recombinase XerD [Bacillus megaterium DSM 319] gi|294804147|gb|ADF41213.1| tyrosine recombinase XerD [Bacillus megaterium DSM 319] Length = 297 Score = 139 bits (349), Expect = 7e-31, Method: Composition-based stats. Identities = 40/272 (14%), Positives = 97/272 (35%), Gaps = 26/272 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHI---RSGVESRKHTPSSAIQFL 137 LA N+ S+E + + ++T HI + ++ + + + + Sbjct: 16 RGLAKNTIDSYERDLKNYAQYLEHVEQLKSFNEVTRLHIVNFLKYLSDQQKSSKTIARHV 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPR 193 S R ++ +R++ +P + ++ P+ + + + E+++ + + + + + Sbjct: 76 ASTRSFHQFLLREKAADTDPSVHIDTPQLERKLPKVLNAEEVEALLNVFDTSTPFGIRDK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE-----------LPDGF 241 E L +G+R S+ + + I+ V Sbjct: 136 AMLELLYATGIRVSELVNLNIDDAHLTMGFIRCIGKGNKERIVPIGRLATEAIEDYLQHS 195 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 +L + F+N+ +++ F K A++A + K + H +R AT + Sbjct: 196 RSVLTKQKEQDKALFVNHHGRRLTRQGFWKILKKLASEAKIEKELTPHTLRHSFATHLLE 255 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331 GA + G + + YT + RL Sbjct: 256 NGADLRAVQEMLGHADISTTQIYTHVT-KARL 286 >gi|291536378|emb|CBL09490.1| tyrosine recombinase XerD subunit [Roseburia intestinalis M50/1] gi|291538752|emb|CBL11863.1| tyrosine recombinase XerD subunit [Roseburia intestinalis XB6B4] Length = 294 Score = 139 bits (349), Expect = 7e-31, Method: Composition-based stats. Identities = 37/261 (14%), Positives = 80/261 (30%), Gaps = 22/261 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138 + N+ +S+E ++ G + +E P++ + + Sbjct: 16 KQTSKNTEVSYERDLRKMNEYLEAQNVYGVSAVTETNLNAYVMFLEREGRKPATVSRSIA 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194 SM+ F + ++ + +P ++ PK + R T E++ S + + + Sbjct: 76 SMKAFFHFLEKERRIESDPAWRLKAPKIEKTMPRILTTEEVTLLLEQPSGNTPKELRDKA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254 E L +G+R S+ V L + + + + + L Sbjct: 136 MLELLYATGIRVSELISLKVSDLNLQMEYVICTDIHKERIIPFGNVAREALTRYMQDGRD 195 Query: 255 FFINNDKQKM----------NATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGA 302 I+ + F K KAG+ + H +R A GA Sbjct: 196 HLISQADCPWLFTNCTGGAMSRQGFWKLIKFYGKKAGIESEITPHTLRHSFAAHLISNGA 255 Query: 303 TAHELMATYGWKTVDQAETYT 323 + G + + Y+ Sbjct: 256 DLKSVQEMLGHSDISTTQIYS 276 >gi|223986264|ref|ZP_03636278.1| hypothetical protein HOLDEFILI_03588 [Holdemania filiformis DSM 12042] gi|223961759|gb|EEF66257.1| hypothetical protein HOLDEFILI_03588 [Holdemania filiformis DSM 12042] Length = 304 Score = 139 bits (349), Expect = 8e-31, Method: Composition-based stats. Identities = 43/303 (14%), Positives = 96/303 (31%), Gaps = 26/303 (8%) Query: 69 TTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSGVE 124 TL+ +Y + + + + + + +I + + V Sbjct: 1 MTLEEAFRQYLIYISIQFPKSEKTIAGYRNDLSRYFQFLAQKEIDRIDQIDSAMLEEYVR 60 Query: 125 --SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE---DM 179 +R H +S +T++R ++ + ++P +E+ +R T++ + Sbjct: 61 VLARDHAAASVNHAITAIRGFHQFLAFRFD-ELDPAEYLEQLQRTQSLPVYCTRDEIEKI 119 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELP 238 + + E L GLR S+ + + + ++ V +P Sbjct: 120 MAQFGHSPKDIRWHAIAELLYGCGLRVSECAALTMNQVDLELGMLRIWGKGNKERLVPMP 179 Query: 239 DGFMKLLA---------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287 +K++ FI +K K+ +AG+ + H Sbjct: 180 KQTIKIVREYVDTVRPLYQKKPTSWLFITRLGKKTTTASIESMIKSVCIQAGIQKPITPH 239 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG---IKNSRRISSVVD 344 +R AT + GA + G + + YT DR RL + ++ Sbjct: 240 KLRHTYATHMLEGGADLRSVQELLGHSDITTTQIYTH-IDRSRLRTAYDEGLGKLMDQEG 298 Query: 345 SDD 347 +D Sbjct: 299 END 301 >gi|84393959|ref|ZP_00992699.1| tyrosine recombinase [Vibrio splendidus 12B01] gi|84375403|gb|EAP92310.1| tyrosine recombinase [Vibrio splendidus 12B01] Length = 304 Score = 139 bits (349), Expect = 8e-31, Method: Composition-based stats. Identities = 39/280 (13%), Positives = 97/280 (34%), Gaps = 24/280 (8%) Query: 74 LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRK--- 127 L+ ++ + L+ N+ +S+ + +++ ++ I+ ++ Sbjct: 13 LVEQFLDAMWMERGLSENTLVSYRTDLSKLLTWMEKNNYRLDFISLSGLQDYQGWLADAD 72 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +S + L+++R LF++ R++ +P + PK + ++E + Sbjct: 73 FKQTSRARMLSAIRRLFQYLHREKVRGDDPSALLISPKLPQRLPKDLSEEQVNALLEAPD 132 Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM 242 + + E L +GLR ++ ++++ ++ G V + + + Sbjct: 133 PNDPIELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVIGKGGKERLVPMGENAV 192 Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289 + F + ++M F K + AG++ S H + Sbjct: 193 DWIETFIEQGRPQLLGENSSDVVFPSKRAKQMTRQTFWYRIKHYSVVAGIDTELLSPHVL 252 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + GA + G + + YT A Sbjct: 253 RHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER 292 >gi|238783654|ref|ZP_04627674.1| Tyrosine recombinase xerD [Yersinia bercovieri ATCC 43970] gi|238715367|gb|EEQ07359.1| Tyrosine recombinase xerD [Yersinia bercovieri ATCC 43970] Length = 299 Score = 139 bits (349), Expect = 8e-31, Method: Composition-based stats. Identities = 46/280 (16%), Positives = 95/280 (33%), Gaps = 24/280 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQI---IRKSGDFDYR--KITTKHIRSGVESRK 127 LI ++ + +LA N+ S+ + + G R + + Sbjct: 8 LIEQFLDALWLERNLAENTLASYRLDLHALTGWLDHHGSDLLRAGSQELQSFLAERIEGG 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + +S+ + L++MR LF++ R++ +P + PK + ++ + + + Sbjct: 68 YKATSSARLLSAMRRLFQYLYREKLRDDDPTAILSSPKLPQRLPKDLSEAQVDTLLNSPN 127 Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 + + E L +GLR S+ + + ++ V L + + Sbjct: 128 VDIPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKERLVPLGEEAV 187 Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289 + + F +N Q+M F K A AG++ S H + Sbjct: 188 YWIENYMDHGRPWLINGQSLDVLFPSNRSQQMTRQTFWHRIKHYAILAGIDSERLSPHVL 247 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + GA + G + + YT A Sbjct: 248 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 287 >gi|289675164|ref|ZP_06496054.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. syringae FF5] Length = 298 Score = 139 bits (349), Expect = 8e-31, Method: Composition-based stats. Identities = 53/291 (18%), Positives = 108/291 (37%), Gaps = 24/291 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT--TKHIRSGVESR---K 127 LI + + L+ N+R S+ S + + I+ + I + R Sbjct: 8 LIDRFLDALWLEKGLSDNTRDSYRSDLALFNGWLQERNVDLISAGREVILDHLAWRVENA 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 + P S +FL+ R +++ +R++ ++++P L ++ P+ + ++ D++ + Sbjct: 68 YKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADVEALLAAPD 127 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 G + R E L GLR ++ ++ + ++ V + + + Sbjct: 128 LSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEESI 187 Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290 + G F + +M F K +AT AG+ KS H +R Sbjct: 188 VWVERYLRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGIGKSLSPHTLR 247 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 AT + GA + G + + YT A R RL ++R Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQELHARHHPR 297 >gi|52424801|ref|YP_087938.1| site-specific tyrosine recombinase XerD [Mannheimia succiniciproducens MBEL55E] gi|52306853|gb|AAU37353.1| XerC protein [Mannheimia succiniciproducens MBEL55E] Length = 298 Score = 139 bits (349), Expect = 8e-31, Method: Composition-based stats. Identities = 41/282 (14%), Positives = 91/282 (32%), Gaps = 24/282 (8%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR-- 126 LI + L+ N+ S+ + + + + +++ + R Sbjct: 5 SALIELFLNELWLGKGLSDNTVQSYRLDLTALSQWLQGQGKSLETLDSSDLQAFLGERVD 64 Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + +S + L++MR LF++ ++ Y +P + PK + T++ + + Sbjct: 65 QGYKATSTARMLSAMRKLFQYLYQESYRTDDPSAILSSPKLPGRLPKYLTEQQVGDLLNA 124 Query: 186 WSEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDG 240 S + + E L +GLR ++ ++ ++ V + + Sbjct: 125 PSTDIPLELRDKAMLELLYATGLRVTELVTLSTDNINLEQGVVRVIGKGNKERIVPMGEE 184 Query: 241 FMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287 + + F + +M F K A A ++ S H Sbjct: 185 ASYWVGQFILYGRPMLLNGQSSDVIFPSKRALQMTRQTFWHRIKHYAILADIDTDSLSPH 244 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R AT + GA + G + + YT A Sbjct: 245 VLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKER 286 >gi|156973275|ref|YP_001444182.1| site-specific tyrosine recombinase XerD [Vibrio harveyi ATCC BAA-1116] gi|156524869|gb|ABU69955.1| hypothetical protein VIBHAR_00956 [Vibrio harveyi ATCC BAA-1116] Length = 305 Score = 139 bits (349), Expect = 8e-31, Method: Composition-based stats. Identities = 41/280 (14%), Positives = 98/280 (35%), Gaps = 24/280 (8%) Query: 74 LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVE---SRK 127 L+ ++ + L+ N+ S+ + +++ + I+ ++ Sbjct: 14 LVEQFLDAMWMERGLSENTLASYRNDLMKLLAWMEQHSYRLDFISLSGLQEYQSYLVDLD 73 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + +S + L+++R LF++ R++ A +P + PK + ++E + Sbjct: 74 YKQTSRARMLSAIRRLFQYIHREKVRADDPSALLVSPKLPQRLPKDISEEQVDALLDAPD 133 Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM 242 + + E L +GLR ++ ++++ ++ G V + + + Sbjct: 134 PNDPVELRDKAMLELLYATGLRVTELVSLTMENVSLRQGLVRVTGKGGKERLVPMGENAV 193 Query: 243 KLLAMTPIG----------KETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289 + + F + ++M F K A AG++ S H + Sbjct: 194 DWIETFIQQGRSALLGETTSDVVFPSKRARQMTRQTFWHRIKYYAVIAGIDTDQLSPHVL 253 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + GA + G + + YT A Sbjct: 254 RHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER 293 >gi|260551079|ref|ZP_05825283.1| tyrosine recombinase XerD [Acinetobacter sp. RUH2624] gi|260405846|gb|EEW99334.1| tyrosine recombinase XerD [Acinetobacter sp. RUH2624] Length = 306 Score = 139 bits (349), Expect = 8e-31, Method: Composition-based stats. Identities = 45/275 (16%), Positives = 88/275 (32%), Gaps = 19/275 (6%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS---GVESRKHTP 130 + +R +++ ++R ++ S Q K ++ I + +P Sbjct: 20 FLQGFRDYLVAQTVSPHTRNAYLSDLIQCAELHKKNSLPKWSSDDISDVLIELTKIGKSP 79 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-- 188 S + L+++R +K+ Q+ + NP + PK + ++ED++ Sbjct: 80 RSIARCLSALRQFYKFLREQKLRSDNPVATHHSPKIGRALPKDLSEEDVEALIQAPDITT 139 Query: 189 --GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLL 245 G + R FE L GLR S+ ++ + ++ V L + Sbjct: 140 ALGLRDRAMFEVLYACGLRVSELINLRLELINLKQGYLRITGKGNKERLVPLGQYACDWV 199 Query: 246 AMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 M+ F K A +A + S H +R A Sbjct: 200 ERYLNDARPQLYKTSTDYLFLTQHGGIMSRQNFWYAIKRYALQANIQAELSPHTLRHAFA 259 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 T + GA + G + + YT A Sbjct: 260 THLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR 294 >gi|255282461|ref|ZP_05347016.1| tyrosine recombinase XerD [Bryantella formatexigens DSM 14469] gi|255267045|gb|EET60250.1| tyrosine recombinase XerD [Bryantella formatexigens DSM 14469] Length = 304 Score = 139 bits (349), Expect = 8e-31, Method: Composition-based stats. Identities = 40/270 (14%), Positives = 95/270 (35%), Gaps = 24/270 (8%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSG---VESRKH 128 ++Y + + + ++ +S++ ++ G + +T + S +E Sbjct: 18 FADYLE--EEKNASNSTVMSYQRDLKKLFHYLSGKGVEKVQDVTATSLNSYILQMEKEGF 75 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + SS + + S+R F + V+ + V +P +++ P + + T E+ Q + Sbjct: 76 STSSVSRTIASIRAFFHFLVKTKAVTEDPSDNLKAPHVEKKTPEILTLEETVQLLNQPEL 135 Query: 189 GS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 S + + E L +G+R S+ + + + + + + + K Sbjct: 136 DSAKGIRDKAMLELLYATGMRVSELISMKLTDVNMAMGYVLCRDSDKERVIPFGTEAEKA 195 Query: 245 LAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKF 292 L E F+N + M+ F K + +AG+ + + H +R Sbjct: 196 LKRYLEESRSVLLKGKESEFLFVNCSGKSMSRQGFWKIIKFYSAQAGITKDITPHTLRHS 255 Query: 293 SATISADAGATAHELMATYGWKTVDQAETY 322 GA + G + + Y Sbjct: 256 FGAHLVQNGADLRAVQEMMGHSDISTTQIY 285 >gi|323702534|ref|ZP_08114197.1| tyrosine recombinase XerD [Desulfotomaculum nigrificans DSM 574] gi|323532508|gb|EGB22384.1| tyrosine recombinase XerD [Desulfotomaculum nigrificans DSM 574] Length = 296 Score = 139 bits (349), Expect = 8e-31, Method: Composition-based stats. Identities = 43/278 (15%), Positives = 99/278 (35%), Gaps = 25/278 (8%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRK 127 + + E+ LA N+ S+ Q + I H+ + + + Sbjct: 2 ERWLQEFIHYLAVERGLAQNTLASYRIDLSQYLSHLKKQGVTAIDQANRNHVLTHLYKLQ 61 Query: 128 HT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ---- 180 + P++ + L +++ +++ + V +P +++E PK + T +++ Sbjct: 62 KSGKAPATISRHLAALKHFYRFLLADGVVTEDPTVNLESPKLGQRLPQVLTTAEVEALLS 121 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPD 239 Q + G + + E + +G+R S+ ++H++ ++ I+ + L Sbjct: 122 QPQLADPAGLRDKAMLELIYATGIRVSEMVTLDIEHVELDMGYIRCFGKGSKERIIPLGA 181 Query: 240 GFMKL-----------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286 L F+N +++ F K A +A +NK + Sbjct: 182 VAAHYVREYLARSRVKLTKGKTEHRALFVNAQGKRLTRQGFWKILKKYAREANINKHITP 241 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT + GA + G + + YT Sbjct: 242 HTLRHSFATHLLENGADLRSVQEMLGHADISTTQIYTH 279 >gi|283835346|ref|ZP_06355087.1| tyrosine recombinase XerD [Citrobacter youngae ATCC 29220] gi|291068511|gb|EFE06620.1| tyrosine recombinase XerD [Citrobacter youngae ATCC 29220] Length = 298 Score = 139 bits (349), Expect = 8e-31, Method: Composition-based stats. Identities = 43/279 (15%), Positives = 92/279 (32%), Gaps = 24/279 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRKH 128 I ++ + +LA N+ ++ ++ T + + + + Sbjct: 8 IEQFLDALWLERNLAENTLSAYRRDLSMLVEWLHHRGVSLATAQSDDLQALLAERMDGGY 67 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--- 185 +S+ + L++ R F+ R++Y +P S+ PK + ++ +++ Sbjct: 68 KATSSARLLSATRRFFQHLYREKYREDDPSASLASPKLPQRLPKDLSEAQVERLLQAPLI 127 Query: 186 -WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243 + + E L +GLR S+ + + ++ V L + + Sbjct: 128 EQPLELRDKAMLEVLYATGLRVSELVGLTMSDVSLRQGVVRVIGKGNKERLVPLGEEAVY 187 Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290 L + F + Q+M F K A AG++ S H +R Sbjct: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + GA + G + + YT A Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286 >gi|225375588|ref|ZP_03752809.1| hypothetical protein ROSEINA2194_01213 [Roseburia inulinivorans DSM 16841] gi|225212567|gb|EEG94921.1| hypothetical protein ROSEINA2194_01213 [Roseburia inulinivorans DSM 16841] Length = 286 Score = 139 bits (349), Expect = 8e-31, Method: Composition-based stats. Identities = 39/270 (14%), Positives = 90/270 (33%), Gaps = 24/270 (8%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESRKHT---P 130 +Y + N+ +S+E ++ + G +T + + S V + + P Sbjct: 12 QYL--HQEKQTSENTEVSYERDLKKMILYLTAHGVDRIDAVTPEVLNSYVIELEQSGLKP 69 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-- 188 ++ + + SM+ F + ++ + +P ++ PK + + T E + + + Sbjct: 70 ATVSRSVASMKAFFHYEELEQRTSADPAFELKAPKVEKKAPTILTTEQTNRLLAQPKDNS 129 Query: 189 --GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246 G + + E L +G+R S+ + + + I + + + L Sbjct: 130 AKGLRDKAMLELLYATGIRVSELISLKLTDVNFDTGYITCVDSHKGRMIPMTPVAKDALV 189 Query: 247 MTPI----------GKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSA 294 F N M+ F K+ +AG+ + H +R A Sbjct: 190 RYIRDGRPQLVKDENSIWLFTNCSGDAMSRQGFWKLIKSYGKRAGIESEITPHMLRHSFA 249 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324 +GA + G + + Y Sbjct: 250 AHLVCSGADLKSVQEILGHSDISTTQMYAH 279 >gi|104783227|ref|YP_609725.1| site-specific tyrosine recombinase XerD [Pseudomonas entomophila L48] gi|95112214|emb|CAK16941.1| site-specific tyrosine recombinase, integrase family [Pseudomonas entomophila L48] Length = 298 Score = 139 bits (349), Expect = 8e-31, Method: Composition-based stats. Identities = 51/281 (18%), Positives = 101/281 (35%), Gaps = 24/281 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESR---K 127 LI ++ + L+ N+R S+ S + + I + R Sbjct: 8 LIDQFLDALWLEKGLSDNTRTSYRSDLALFNGWLQEQGVALPDAGRELILDHLAWRFDQA 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + P S +FL+ +R +++ +R+ +A++P L V+ P+ + ++ D++ Sbjct: 68 YKPRSTARFLSGVRGFYRYLLRERMIAVDPTLQVDMPQLGRPLPKSLSEADVEALLKAPD 127 Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 G + R E L GLR ++ + + ++ V + + + Sbjct: 128 LGEAIGQRDRAMLEVLYACGLRVTELVSLTLDQVNLRQGVLRVMGKGSKERLVPMGEEAV 187 Query: 243 KLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 L + F + ++M F K A AG++K S H +R Sbjct: 188 LWLERYLRDGRAELLNGRPSDVLFPSLRGEQMTRQTFWHRIKHHARVAGIDKPLSPHTLR 247 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 AT + GA + G + + YT A + RL Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-KARL 287 >gi|294340185|emb|CAZ88557.1| Tyrosine recombinase xerD [Thiomonas sp. 3As] Length = 317 Score = 139 bits (349), Expect = 8e-31, Method: Composition-based stats. Identities = 53/313 (16%), Positives = 104/313 (33%), Gaps = 35/313 (11%) Query: 59 EYINSPRKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSG---DFDYRKI 114 E+ +P TT+ + + L+ N+ ++ + R + Sbjct: 9 EWPPAPEACATTIDRFCDALWLED----GLSPNTLAAYRRDLTLMARWLAFSQRQPLIEA 64 Query: 115 TTKHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 T + +++ + +R +S+ + L +R ++WA+R+ +P L ++ ++ + Sbjct: 65 TLRDVQAYIAARFMQSKATSSNRRLVVLRRFYRWALREHLRTDDPTLQLDTARQPPRRPK 124 Query: 173 PWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQ 227 ++ ++ + + + R E L SGLR S+ V + + Sbjct: 125 TLSEAQVEALLAAPEVDTPLGLRDRAMLELLYASGLRVSELVALPVVRVSLDQGVVQIAG 184 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK-----------------MNATQFS 270 K G V L + M F Sbjct: 185 KGGKERLVPFGSAAQDWLQNYLRTARHELLQGRDSPFLFVTARSGQSARETTGMTRQMFW 244 Query: 271 IWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 + KA A KAG+ S H +R AT + GA + G + + YT A R Sbjct: 245 MRIKAYARKAGIDVPLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHIA-R 303 Query: 329 IRLGIKNSRRISS 341 RL ++R Sbjct: 304 ERLKTLHARHHPR 316 >gi|157162354|ref|YP_001459672.1| site-specific tyrosine recombinase XerD [Escherichia coli HS] gi|157068034|gb|ABV07289.1| tyrosine recombinase XerD [Escherichia coli HS] Length = 298 Score = 139 bits (349), Expect = 8e-31, Method: Composition-based stats. Identities = 42/279 (15%), Positives = 94/279 (33%), Gaps = 24/279 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRKH 128 I ++ + +LA N+ ++ ++ T + + + + Sbjct: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +S+ + L+++R LF++ R+++ +P + PK + ++ +++ Sbjct: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 Query: 189 G----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243 + + E L +GLR S+ + + ++ V L + + Sbjct: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187 Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290 L + F + Q+M F K A AG++ S H +R Sbjct: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + GA + G + + YT A Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286 >gi|16130796|ref|NP_417370.1| site-specific tyrosine recombinase [Escherichia coli str. K-12 substr. MG1655] gi|26249309|ref|NP_755349.1| site-specific tyrosine recombinase XerD [Escherichia coli CFT073] gi|74313452|ref|YP_311871.1| site-specific tyrosine recombinase XerD [Shigella sonnei Ss046] gi|82545483|ref|YP_409430.1| site-specific tyrosine recombinase XerD [Shigella boydii Sb227] gi|82778340|ref|YP_404689.1| site-specific tyrosine recombinase XerD [Shigella dysenteriae Sd197] gi|89109673|ref|AP_003453.1| site-specific tyrosine recombinase [Escherichia coli str. K-12 substr. W3110] gi|110643042|ref|YP_670772.1| site-specific tyrosine recombinase XerD [Escherichia coli 536] gi|110806797|ref|YP_690317.1| site-specific tyrosine recombinase XerD [Shigella flexneri 5 str. 8401] gi|157158312|ref|YP_001464231.1| site-specific tyrosine recombinase XerD [Escherichia coli E24377A] gi|168747627|ref|ZP_02772649.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4113] gi|168753832|ref|ZP_02778839.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4401] gi|168766887|ref|ZP_02791894.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4486] gi|168775771|ref|ZP_02800778.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4196] gi|168778907|ref|ZP_02803914.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4076] gi|168785740|ref|ZP_02810747.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC869] gi|168800027|ref|ZP_02825034.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC508] gi|170082455|ref|YP_001731775.1| site-specific tyrosine recombinase [Escherichia coli str. K-12 substr. DH10B] gi|170681991|ref|YP_001745047.1| site-specific tyrosine recombinase XerD [Escherichia coli SMS-3-5] gi|187732006|ref|YP_001881663.1| site-specific tyrosine recombinase XerD [Shigella boydii CDC 3083-94] gi|188496120|ref|ZP_03003390.1| tyrosine recombinase XerD [Escherichia coli 53638] gi|191166010|ref|ZP_03027846.1| tyrosine recombinase XerD [Escherichia coli B7A] gi|191173237|ref|ZP_03034768.1| tyrosine recombinase XerD [Escherichia coli F11] gi|193063471|ref|ZP_03044560.1| tyrosine recombinase XerD [Escherichia coli E22] gi|193070556|ref|ZP_03051495.1| tyrosine recombinase XerD [Escherichia coli E110019] gi|194426297|ref|ZP_03058852.1| tyrosine recombinase XerD [Escherichia coli B171] gi|194431675|ref|ZP_03063966.1| tyrosine recombinase XerD [Shigella dysenteriae 1012] gi|194436800|ref|ZP_03068900.1| tyrosine recombinase XerD [Escherichia coli 101-1] gi|195936512|ref|ZP_03081894.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4024] gi|208806438|ref|ZP_03248775.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4206] gi|208814608|ref|ZP_03255937.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4045] gi|208820065|ref|ZP_03260385.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4042] gi|209398903|ref|YP_002272368.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4115] gi|209920348|ref|YP_002294432.1| site-specific tyrosine recombinase XerD [Escherichia coli SE11] gi|215488194|ref|YP_002330625.1| site-specific tyrosine recombinase XerD [Escherichia coli O127:H6 str. E2348/69] gi|218555442|ref|YP_002388355.1| site-specific tyrosine recombinase XerD [Escherichia coli IAI1] gi|218691019|ref|YP_002399231.1| site-specific tyrosine recombinase XerD [Escherichia coli ED1a] gi|218696489|ref|YP_002404156.1| site-specific tyrosine recombinase XerD [Escherichia coli 55989] gi|227888443|ref|ZP_04006248.1| site-specific tyrosine recombinase [Escherichia coli 83972] gi|238902019|ref|YP_002927815.1| site-specific tyrosine recombinase [Escherichia coli BW2952] gi|253772265|ref|YP_003035096.1| site-specific tyrosine recombinase XerD [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162806|ref|YP_003045914.1| site-specific tyrosine recombinase XerD [Escherichia coli B str. REL606] gi|254794844|ref|YP_003079681.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H7 str. TW14359] gi|256019308|ref|ZP_05433173.1| site-specific tyrosine recombinase XerD [Shigella sp. D9] gi|256024596|ref|ZP_05438461.1| site-specific tyrosine recombinase XerD [Escherichia sp. 4_1_40B] gi|260845562|ref|YP_003223340.1| site-specific tyrosine recombinase XerD [Escherichia coli O103:H2 str. 12009] gi|260857017|ref|YP_003230908.1| site-specific tyrosine recombinase XerD [Escherichia coli O26:H11 str. 11368] gi|260869571|ref|YP_003235973.1| site-specific tyrosine recombinase XerD [Escherichia coli O111:H- str. 11128] gi|261226207|ref|ZP_05940488.1| site-specific tyrosine recombinase [Escherichia coli O157:H7 str. FRIK2000] gi|261256538|ref|ZP_05949071.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H7 str. FRIK966] gi|291284213|ref|YP_003501031.1| Tyrosine recombinase xerD [Escherichia coli O55:H7 str. CB9615] gi|293412253|ref|ZP_06654976.1| tyrosine recombinase XerD [Escherichia coli B354] gi|293416147|ref|ZP_06658787.1| tyrosine recombinase XerD [Escherichia coli B185] gi|293449216|ref|ZP_06663637.1| tyrosine recombinase XerD [Escherichia coli B088] gi|297521422|ref|ZP_06939808.1| site-specific tyrosine recombinase XerD [Escherichia coli OP50] gi|300815654|ref|ZP_07095878.1| tyrosine recombinase XerD [Escherichia coli MS 107-1] gi|300820698|ref|ZP_07100849.1| tyrosine recombinase XerD [Escherichia coli MS 119-7] gi|300906556|ref|ZP_07124247.1| tyrosine recombinase XerD [Escherichia coli MS 84-1] gi|300921226|ref|ZP_07137599.1| tyrosine recombinase XerD [Escherichia coli MS 115-1] gi|300925125|ref|ZP_07141039.1| tyrosine recombinase XerD [Escherichia coli MS 182-1] gi|300928170|ref|ZP_07143712.1| tyrosine recombinase XerD [Escherichia coli MS 187-1] gi|300936040|ref|ZP_07150988.1| tyrosine recombinase XerD [Escherichia coli MS 21-1] gi|300947617|ref|ZP_07161788.1| tyrosine recombinase XerD [Escherichia coli MS 116-1] gi|300954266|ref|ZP_07166729.1| tyrosine recombinase XerD [Escherichia coli MS 175-1] gi|300980312|ref|ZP_07174966.1| tyrosine recombinase XerD [Escherichia coli MS 45-1] gi|300995674|ref|ZP_07181202.1| tyrosine recombinase XerD [Escherichia coli MS 200-1] gi|301027808|ref|ZP_07191113.1| tyrosine recombinase XerD [Escherichia coli MS 196-1] gi|301049322|ref|ZP_07196292.1| tyrosine recombinase XerD [Escherichia coli MS 185-1] gi|301303052|ref|ZP_07209179.1| tyrosine recombinase XerD [Escherichia coli MS 124-1] gi|301327295|ref|ZP_07220551.1| tyrosine recombinase XerD [Escherichia coli MS 78-1] gi|301643756|ref|ZP_07243794.1| tyrosine recombinase XerD [Escherichia coli MS 146-1] gi|307139581|ref|ZP_07498937.1| site-specific tyrosine recombinase XerD [Escherichia coli H736] gi|307310487|ref|ZP_07590135.1| tyrosine recombinase XerD [Escherichia coli W] gi|309785299|ref|ZP_07679930.1| tyrosine recombinase XerD [Shigella dysenteriae 1617] gi|312964846|ref|ZP_07779086.1| tyrosine recombinase XerD [Escherichia coli 2362-75] gi|331643584|ref|ZP_08344715.1| tyrosine recombinase XerD [Escherichia coli H736] gi|331648640|ref|ZP_08349728.1| tyrosine recombinase XerD [Escherichia coli M605] gi|331659024|ref|ZP_08359966.1| tyrosine recombinase XerD [Escherichia coli TA206] gi|331664467|ref|ZP_08365373.1| tyrosine recombinase XerD [Escherichia coli TA143] gi|331669629|ref|ZP_08370475.1| tyrosine recombinase XerD [Escherichia coli TA271] gi|331674379|ref|ZP_08375139.1| tyrosine recombinase XerD [Escherichia coli TA280] gi|331678881|ref|ZP_08379555.1| tyrosine recombinase XerD [Escherichia coli H591] gi|331684520|ref|ZP_08385112.1| tyrosine recombinase XerD [Escherichia coli H299] gi|67475548|sp|P0A8P8|XERD_ECOLI RecName: Full=Tyrosine recombinase xerD gi|67475549|sp|P0A8P9|XERD_ECOL6 RecName: Full=Tyrosine recombinase xerD gi|26109717|gb|AAN81922.1|AE016766_10 Integrase/recombinase xerD [Escherichia coli CFT073] gi|147548|gb|AAA62787.1| xprB [Escherichia coli] gi|887844|gb|AAA83075.1| site-specific integrase/recombinase, with xerC [Escherichia coli] gi|1789261|gb|AAC75932.1| site-specific tyrosine recombinase [Escherichia coli str. K-12 substr. MG1655] gi|73856929|gb|AAZ89636.1| site-specific recombinase [Shigella sonnei Ss046] gi|81242488|gb|ABB63198.1| site-specific recombinase [Shigella dysenteriae Sd197] gi|81246894|gb|ABB67602.1| site-specific recombinase [Shigella boydii Sb227] gi|85675706|dbj|BAE76959.1| site-specific tyrosine recombinase [Escherichia coli str. K12 substr. W3110] gi|110344634|gb|ABG70871.1| integrase/recombinase XerD [Escherichia coli 536] gi|110616345|gb|ABF05012.1| site-specific recombinase [Shigella flexneri 5 str. 8401] gi|157080342|gb|ABV20050.1| tyrosine recombinase XerD [Escherichia coli E24377A] gi|169890290|gb|ACB03997.1| site-specific tyrosine recombinase [Escherichia coli str. K-12 substr. DH10B] gi|170519709|gb|ACB17887.1| tyrosine recombinase XerD [Escherichia coli SMS-3-5] gi|187428998|gb|ACD08272.1| tyrosine recombinase XerD [Shigella boydii CDC 3083-94] gi|187768812|gb|EDU32656.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4196] gi|188017752|gb|EDU55874.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4113] gi|188491319|gb|EDU66422.1| tyrosine recombinase XerD [Escherichia coli 53638] gi|189003626|gb|EDU72612.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4076] gi|189358670|gb|EDU77089.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4401] gi|189363773|gb|EDU82192.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4486] gi|189373936|gb|EDU92352.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC869] gi|189377626|gb|EDU96042.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC508] gi|190903958|gb|EDV63671.1| tyrosine recombinase XerD [Escherichia coli B7A] gi|190906488|gb|EDV66096.1| tyrosine recombinase XerD [Escherichia coli F11] gi|192930748|gb|EDV83353.1| tyrosine recombinase XerD [Escherichia coli E22] gi|192956139|gb|EDV86603.1| tyrosine recombinase XerD [Escherichia coli E110019] gi|194415605|gb|EDX31872.1| tyrosine recombinase XerD [Escherichia coli B171] gi|194420031|gb|EDX36109.1| tyrosine recombinase XerD [Shigella dysenteriae 1012] gi|194424282|gb|EDX40269.1| tyrosine recombinase XerD [Escherichia coli 101-1] gi|208726239|gb|EDZ75840.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4206] gi|208735885|gb|EDZ84572.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4045] gi|208740188|gb|EDZ87870.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4042] gi|209160303|gb|ACI37736.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4115] gi|209760578|gb|ACI78601.1| site-specific recombinase [Escherichia coli] gi|209760582|gb|ACI78603.1| site-specific recombinase [Escherichia coli] gi|209760584|gb|ACI78604.1| site-specific recombinase [Escherichia coli] gi|209760586|gb|ACI78605.1| site-specific recombinase [Escherichia coli] gi|209913607|dbj|BAG78681.1| site-specific recombinase [Escherichia coli SE11] gi|215266266|emb|CAS10695.1| site-specific tyrosine recombinase [Escherichia coli O127:H6 str. E2348/69] gi|218353221|emb|CAU99139.1| site-specific tyrosine recombinase [Escherichia coli 55989] gi|218362210|emb|CAQ99828.1| site-specific tyrosine recombinase [Escherichia coli IAI1] gi|218428583|emb|CAR09510.2| site-specific tyrosine recombinase [Escherichia coli ED1a] gi|222034589|emb|CAP77331.1| Tyrosine recombinase xerD [Escherichia coli LF82] gi|227834712|gb|EEJ45178.1| site-specific tyrosine recombinase [Escherichia coli 83972] gi|238863557|gb|ACR65555.1| site-specific tyrosine recombinase [Escherichia coli BW2952] gi|242378425|emb|CAQ33206.1| site-specific recombinase, subunit of Xer site-specific recombination system [Escherichia coli BL21(DE3)] gi|253323309|gb|ACT27911.1| tyrosine recombinase XerD [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974707|gb|ACT40378.1| site-specific tyrosine recombinase XerD [Escherichia coli B str. REL606] gi|253978873|gb|ACT44543.1| site-specific tyrosine recombinase XerD [Escherichia coli BL21(DE3)] gi|254594244|gb|ACT73605.1| site-specific tyrosine recombinase [Escherichia coli O157:H7 str. TW14359] gi|257755666|dbj|BAI27168.1| site-specific tyrosine recombinase XerD [Escherichia coli O26:H11 str. 11368] gi|257760709|dbj|BAI32206.1| site-specific tyrosine recombinase XerD [Escherichia coli O103:H2 str. 12009] gi|257765927|dbj|BAI37422.1| site-specific tyrosine recombinase XerD [Escherichia coli O111:H- str. 11128] gi|260448060|gb|ACX38482.1| tyrosine recombinase XerD [Escherichia coli DH1] gi|281179899|dbj|BAI56229.1| site-specific recombinase [Escherichia coli SE15] gi|284922842|emb|CBG35931.1| tyrosine recombinase [Escherichia coli 042] gi|290764086|gb|ADD58047.1| Tyrosine recombinase xerD [Escherichia coli O55:H7 str. CB9615] gi|291322306|gb|EFE61735.1| tyrosine recombinase XerD [Escherichia coli B088] gi|291432336|gb|EFF05318.1| tyrosine recombinase XerD [Escherichia coli B185] gi|291469024|gb|EFF11515.1| tyrosine recombinase XerD [Escherichia coli B354] gi|299879070|gb|EFI87281.1| tyrosine recombinase XerD [Escherichia coli MS 196-1] gi|300298921|gb|EFJ55306.1| tyrosine recombinase XerD [Escherichia coli MS 185-1] gi|300304782|gb|EFJ59302.1| tyrosine recombinase XerD [Escherichia coli MS 200-1] gi|300318727|gb|EFJ68511.1| tyrosine recombinase XerD [Escherichia coli MS 175-1] gi|300401595|gb|EFJ85133.1| tyrosine recombinase XerD [Escherichia coli MS 84-1] gi|300409320|gb|EFJ92858.1| tyrosine recombinase XerD [Escherichia coli MS 45-1] gi|300411832|gb|EFJ95142.1| tyrosine recombinase XerD [Escherichia coli MS 115-1] gi|300418727|gb|EFK02038.1| tyrosine recombinase XerD [Escherichia coli MS 182-1] gi|300452792|gb|EFK16412.1| tyrosine recombinase XerD [Escherichia coli MS 116-1] gi|300458832|gb|EFK22325.1| tyrosine recombinase XerD [Escherichia coli MS 21-1] gi|300463810|gb|EFK27303.1| tyrosine recombinase XerD [Escherichia coli MS 187-1] gi|300526962|gb|EFK48031.1| tyrosine recombinase XerD [Escherichia coli MS 119-7] gi|300531583|gb|EFK52645.1| tyrosine recombinase XerD [Escherichia coli MS 107-1] gi|300841716|gb|EFK69476.1| tyrosine recombinase XerD [Escherichia coli MS 124-1] gi|300846158|gb|EFK73918.1| tyrosine recombinase XerD [Escherichia coli MS 78-1] gi|301077855|gb|EFK92661.1| tyrosine recombinase XerD [Escherichia coli MS 146-1] gi|306909382|gb|EFN39877.1| tyrosine recombinase XerD [Escherichia coli W] gi|307554870|gb|ADN47645.1| site-specific tyrosine recombinase XerD [Escherichia coli ABU 83972] gi|308926419|gb|EFP71895.1| tyrosine recombinase XerD [Shigella dysenteriae 1617] gi|309703254|emb|CBJ02589.1| tyrosine recombinase [Escherichia coli ETEC H10407] gi|312290402|gb|EFR18282.1| tyrosine recombinase XerD [Escherichia coli 2362-75] gi|312947427|gb|ADR28254.1| site-specific tyrosine recombinase XerD [Escherichia coli O83:H1 str. NRG 857C] gi|315062198|gb|ADT76525.1| site-specific tyrosine recombinase [Escherichia coli W] gi|315137493|dbj|BAJ44652.1| tyrosine recombinase xerD [Escherichia coli DH1] gi|315256777|gb|EFU36745.1| tyrosine recombinase XerD [Escherichia coli MS 85-1] gi|315293873|gb|EFU53225.1| tyrosine recombinase XerD [Escherichia coli MS 153-1] gi|315295682|gb|EFU55002.1| tyrosine recombinase XerD [Escherichia coli MS 16-3] gi|315614950|gb|EFU95588.1| tyrosine recombinase XerD [Escherichia coli 3431] gi|320175918|gb|EFW50996.1| Tyrosine recombinase XerD [Shigella dysenteriae CDC 74-1112] gi|320182203|gb|EFW57106.1| Tyrosine recombinase XerD [Shigella boydii ATCC 9905] gi|320184562|gb|EFW59363.1| Tyrosine recombinase XerD [Shigella flexneri CDC 796-83] gi|320189238|gb|EFW63897.1| Tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC1212] gi|320195013|gb|EFW69642.1| Tyrosine recombinase XerD [Escherichia coli WV_060327] gi|320202554|gb|EFW77124.1| Tyrosine recombinase XerD [Escherichia coli EC4100B] gi|320640537|gb|EFX10076.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H7 str. G5101] gi|320645784|gb|EFX14769.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H- str. 493-89] gi|320651084|gb|EFX19524.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H- str. H 2687] gi|320656580|gb|EFX24476.1| site-specific tyrosine recombinase XerD [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320662100|gb|EFX29501.1| site-specific tyrosine recombinase XerD [Escherichia coli O55:H7 str. USDA 5905] gi|320667175|gb|EFX34138.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H7 str. LSU-61] gi|323162515|gb|EFZ48365.1| tyrosine recombinase XerD [Escherichia coli E128010] gi|323167900|gb|EFZ53590.1| tyrosine recombinase XerD [Shigella sonnei 53G] gi|323180338|gb|EFZ65890.1| tyrosine recombinase XerD [Escherichia coli 1180] gi|323183448|gb|EFZ68845.1| tyrosine recombinase XerD [Escherichia coli 1357] gi|323188707|gb|EFZ73992.1| tyrosine recombinase XerD [Escherichia coli RN587/1] gi|323377218|gb|ADX49486.1| tyrosine recombinase XerD [Escherichia coli KO11] gi|323935874|gb|EGB32173.1| tyrosine recombinase XerD [Escherichia coli E1520] gi|323941585|gb|EGB37765.1| tyrosine recombinase XerD [Escherichia coli E482] gi|323946620|gb|EGB42643.1| tyrosine recombinase XerD [Escherichia coli H120] gi|323960809|gb|EGB56430.1| tyrosine recombinase XerD [Escherichia coli H489] gi|323966695|gb|EGB62127.1| tyrosine recombinase XerD [Escherichia coli M863] gi|323971668|gb|EGB66897.1| tyrosine recombinase XerD [Escherichia coli TA007] gi|323978814|gb|EGB73895.1| tyrosine recombinase XerD [Escherichia coli TW10509] gi|324005546|gb|EGB74765.1| tyrosine recombinase XerD [Escherichia coli MS 57-2] gi|324011756|gb|EGB80975.1| tyrosine recombinase XerD [Escherichia coli MS 60-1] gi|324119935|gb|EGC13814.1| tyrosine recombinase XerD [Escherichia coli E1167] gi|325498455|gb|EGC96314.1| site-specific tyrosine recombinase [Escherichia fergusonii ECD227] gi|326343096|gb|EGD66864.1| Tyrosine recombinase XerD [Escherichia coli O157:H7 str. 1125] gi|327251657|gb|EGE63343.1| tyrosine recombinase XerD [Escherichia coli STEC_7v] gi|330908926|gb|EGH37440.1| tyrosine recombinase XerD [Escherichia coli AA86] gi|331037055|gb|EGI09279.1| tyrosine recombinase XerD [Escherichia coli H736] gi|331042387|gb|EGI14529.1| tyrosine recombinase XerD [Escherichia coli M605] gi|331053606|gb|EGI25635.1| tyrosine recombinase XerD [Escherichia coli TA206] gi|331058398|gb|EGI30379.1| tyrosine recombinase XerD [Escherichia coli TA143] gi|331063297|gb|EGI35210.1| tyrosine recombinase XerD [Escherichia coli TA271] gi|331068473|gb|EGI39868.1| tyrosine recombinase XerD [Escherichia coli TA280] gi|331073711|gb|EGI45032.1| tyrosine recombinase XerD [Escherichia coli H591] gi|331078135|gb|EGI49341.1| tyrosine recombinase XerD [Escherichia coli H299] gi|332087665|gb|EGI92792.1| tyrosine recombinase XerD [Shigella dysenteriae 155-74] gi|332090893|gb|EGI95984.1| tyrosine recombinase XerD [Shigella boydii 3594-74] gi|332102774|gb|EGJ06120.1| tyrosine recombinase xerD [Shigella sp. D9] Length = 298 Score = 139 bits (349), Expect = 8e-31, Method: Composition-based stats. Identities = 42/279 (15%), Positives = 94/279 (33%), Gaps = 24/279 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRKH 128 I ++ + +LA N+ ++ ++ T + + + + Sbjct: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +S+ + L+++R LF++ R+++ +P + PK + ++ +++ Sbjct: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 Query: 189 G----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243 + + E L +GLR S+ + + ++ V L + + Sbjct: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187 Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290 L + F + Q+M F K A AG++ S H +R Sbjct: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + GA + G + + YT A Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286 >gi|311030547|ref|ZP_07708637.1| hypothetical protein Bm3-1_08391 [Bacillus sp. m3-13] Length = 280 Score = 139 bits (349), Expect = 8e-31, Method: Composition-based stats. Identities = 47/271 (17%), Positives = 98/271 (36%), Gaps = 12/271 (4%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG--VESRKH 128 L + +Y+ + + ++ ++ ++R GD + +TT ++ S Sbjct: 3 LSQVWEKYQLDKKIEGYSPLTLKTYCFQYNMLLRYFGDIELNILTTDQLKEYLIKGSTHL 62 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 PSS + +R LFKWA + ++ NP ++ PK + T+ +++ + Sbjct: 63 KPSSLGHRVRCIRSLFKWANDEGFIKKNPAAKLKEPKLGKRIPKFLTELEIEH-LRESCQ 121 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELPDGFMKLLAM 247 S FEF +G R + + + + I K V L Sbjct: 122 NSMENALFEFFYSTGCRIGEVVKLNRDDINFASNSVIVHGKGDKEREVYFNTRCSLWLKR 181 Query: 248 TPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 ++ K++M+ K ++ AG+ K H +R AT + Sbjct: 182 YLDERDDQDQSLFITERRPKRRMSIDLIRYIIKRISSGAGIKKNIHPHQLRHSYATHMIN 241 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIR 330 GA + + G + + Y + + ++R Sbjct: 242 NGAPLEVIQSLLGHEKSETTRIYAQLSGKLR 272 >gi|153002033|ref|YP_001367714.1| tyrosine recombinase XerD [Shewanella baltica OS185] gi|151366651|gb|ABS09651.1| tyrosine recombinase XerD [Shewanella baltica OS185] Length = 309 Score = 139 bits (349), Expect = 9e-31, Method: Composition-based stats. Identities = 44/283 (15%), Positives = 90/283 (31%), Gaps = 28/283 (9%) Query: 74 LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRK 127 LI + L+ N+ ++ + R + + + + Sbjct: 19 LIDVFLDDLWSNKGLSDNTLSAYRTDLRHFDRYQAQQGVTLLAVSQADVRAYLAFRVEQD 78 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +S+ + L+S+R + + V+ + ++ +P VE PK ++ + + S + Sbjct: 79 FARTSSARLLSSLRRFYTYLVQTKQISADPMALVESPKLTRHLPDSLSESQVDRLLSEPN 138 Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-------------G 230 + + E L +GLR S+ ++ + ++ Sbjct: 139 VEDAVECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVRIVGKGGKERLVPLGELAI 198 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHG 288 T + + +LL F K A +AG+ S H Sbjct: 199 TEVESYMKFARQELLGNKQSDVVFPSKRGQMM--TRQTFWHRIKLYALRAGIETALSPHT 256 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +R AT + GA + G + + YT A R RL Sbjct: 257 LRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVA-RARL 298 >gi|24114148|ref|NP_708658.1| site-specific tyrosine recombinase XerD [Shigella flexneri 2a str. 301] gi|30064206|ref|NP_838377.1| site-specific tyrosine recombinase XerD [Shigella flexneri 2a str. 2457T] gi|91212272|ref|YP_542258.1| site-specific tyrosine recombinase XerD [Escherichia coli UTI89] gi|218559887|ref|YP_002392800.1| site-specific tyrosine recombinase XerD [Escherichia coli S88] gi|237706462|ref|ZP_04536943.1| tyrosine recombinase xerD [Escherichia sp. 3_2_53FAA] gi|34222799|sp|Q7ZAM0|XERD_SHIFL RecName: Full=Tyrosine recombinase xerD gi|24053288|gb|AAN44365.1| site-specific recombinase [Shigella flexneri 2a str. 301] gi|30042463|gb|AAP18187.1| site-specific recombinase [Shigella flexneri 2a str. 2457T] gi|91073846|gb|ABE08727.1| site-specific recombinase [Escherichia coli UTI89] gi|218366656|emb|CAR04410.1| site-specific tyrosine recombinase [Escherichia coli S88] gi|226899502|gb|EEH85761.1| tyrosine recombinase xerD [Escherichia sp. 3_2_53FAA] gi|294492679|gb|ADE91435.1| tyrosine recombinase XerD [Escherichia coli IHE3034] gi|307625533|gb|ADN69837.1| site-specific tyrosine recombinase XerD [Escherichia coli UM146] gi|313647934|gb|EFS12380.1| tyrosine recombinase XerD [Shigella flexneri 2a str. 2457T] gi|315289443|gb|EFU48838.1| tyrosine recombinase XerD [Escherichia coli MS 110-3] gi|323951667|gb|EGB47542.1| tyrosine recombinase XerD [Escherichia coli H252] gi|323957385|gb|EGB53107.1| tyrosine recombinase XerD [Escherichia coli H263] Length = 298 Score = 139 bits (349), Expect = 9e-31, Method: Composition-based stats. Identities = 42/279 (15%), Positives = 94/279 (33%), Gaps = 24/279 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRKH 128 I ++ + +LA N+ ++ ++ T + + + + Sbjct: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +S+ + L+++R LF++ R+++ +P + PK + ++ +++ Sbjct: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 Query: 189 G----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243 + + E L +GLR S+ + + ++ V L + + Sbjct: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187 Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290 L + F + Q+M F K A AG++ S H +R Sbjct: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + GA + G + + YT A Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286 >gi|227328397|ref|ZP_03832421.1| site-specific tyrosine recombinase XerD [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 299 Score = 139 bits (349), Expect = 9e-31, Method: Composition-based stats. Identities = 42/281 (14%), Positives = 94/281 (33%), Gaps = 24/281 (8%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGVESR 126 LI ++ + +LA N+ S+ + G + + + + Sbjct: 7 ALIEQFLDALWLERNLAENTLASYRLDLRTLAEWVAHHENGLLQAQSLDLQAFLADRVEG 66 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 + +S+ + L++MR F++ R++ + +P + PK + ++ + + Sbjct: 67 GYKATSSARLLSAMRRFFQYLYREKLRSDDPSAVLSSPKLPQRLPKDLSEAQVDALLNAP 126 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241 + + E L +GLR S+ + + ++ K V L + Sbjct: 127 SIEQPLELRDKAMLEVLYATGLRVSELVSLTMSDVSLRQGVVRVLGKGNKERLVPLGEEA 186 Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 + + + F ++ ++M F K A A ++ S H Sbjct: 187 VYWIEYYLEHGRPWLLNGQTLDVLFPSSRARQMTRQTFWHRIKHYAVLASIDSEKLSPHV 246 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R AT + GA + G + + YT A Sbjct: 247 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 287 >gi|313204480|ref|YP_004043137.1| tyrosine recombinase xerd subunit [Paludibacter propionicigenes WB4] gi|312443796|gb|ADQ80152.1| tyrosine recombinase XerD subunit [Paludibacter propionicigenes WB4] Length = 302 Score = 138 bits (348), Expect = 9e-31, Method: Composition-based stats. Identities = 50/272 (18%), Positives = 95/272 (34%), Gaps = 23/272 (8%) Query: 76 SEYRKSAHWGS-LAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGV---ESRKHT 129 EY L+ N+ ++E ++ + TT+ +R + S Sbjct: 6 DEYHLYLKLEKALSANTIDAYERDLQKLTVYLSEAHVKPEEATTEILRDFIIEISSLGIH 65 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--- 186 P S + L+S++ + + + ++ + +P +E PK + ++ S Sbjct: 66 PRSQARILSSIKSFYHFLIYKDVIDNDPTELLESPKTGLRLPEVLSLNEIDDIVSAIDLS 125 Query: 187 -SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-----------KTQKTGTIIT 234 EG + + E L SGLR S+ + + + + + Sbjct: 126 KPEGQRNKAIIEVLYGSGLRVSELIGLQLSKMYMDEGYMLVEGKGSKQRLVPMSPQAMKQ 185 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292 +EL LL + ++ F+N K+ K A AG+ K S H R Sbjct: 186 IELWKTDRNLLDIKKGNEDCLFLNRRGSKLTRDMIFKIVKELALLAGIRKNVSPHTFRHS 245 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324 AT + GA + G +++ E YT Sbjct: 246 FATHLLENGANLRAIQQLLGHESITTTEIYTH 277 >gi|323697881|ref|ZP_08109793.1| tyrosine recombinase XerD [Desulfovibrio sp. ND132] gi|323457813|gb|EGB13678.1| tyrosine recombinase XerD [Desulfovibrio desulfuricans ND132] Length = 307 Score = 138 bits (348), Expect = 9e-31, Method: Composition-based stats. Identities = 46/279 (16%), Positives = 94/279 (33%), Gaps = 22/279 (7%) Query: 74 LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHI---RSGVESRK 127 + Y + L+ NS + + ++ + + +T + + + + +R Sbjct: 17 WVDRYLEHLLIEKGLSENSLTGYANDLGSLLAFLEERSFPLKDLTDQTLFLYLTHLRARG 76 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---- 183 S + L+S+R F +AV +++ +P +E PK + ++E++ + Sbjct: 77 LKSRSLARHLSSLRGFFAFAVGEKWYKEDPGQLLENPKLPRKLPEFLSREEISRVLALPD 136 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV-QHLQNNIFSIKTQKTGTIITVELPDGFM 242 + G + ++ E L +GLR S+ V + K + + Sbjct: 137 TSTPLGMRDKVMLELLYAAGLRVSELIGMKVLDYDPQVGMLKVFGKGSKDRLIPIHYTAQ 196 Query: 243 KLLAMTPIGKETFFINNDKQKM--------NATQFSIWFKAKATKAGVNKS--AHGVRKF 292 L F + K A AG+ +S H R Sbjct: 197 DYLNRYLEFTRPGFKPREDFMFLNRSGKGLTRQGVWKLIKKYAEAAGIKRSISPHTFRHS 256 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIR 330 AT + GA + G + E YT A+R++ Sbjct: 257 FATHLLEGGADLRTVQILLGHADISATEIYTHVEANRLK 295 >gi|323173892|gb|EFZ59521.1| tyrosine recombinase XerD [Escherichia coli LT-68] Length = 298 Score = 138 bits (348), Expect = 9e-31, Method: Composition-based stats. Identities = 42/279 (15%), Positives = 94/279 (33%), Gaps = 24/279 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRKH 128 I ++ + +LA N+ ++ ++ T + + + + Sbjct: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +S+ + L+++R LF++ R+++ +P + PK + ++ +++ Sbjct: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 Query: 189 G----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243 + + E L +GLR S+ + + ++ V L + + Sbjct: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187 Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290 L + F + Q+M F K A AG++ S H +R Sbjct: 188 WLETYLEHGRPWLLNCVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + GA + G + + YT A Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286 >gi|167627279|ref|YP_001677779.1| site-specific recombinase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597280|gb|ABZ87278.1| site-specific recombinase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 292 Score = 138 bits (348), Expect = 9e-31, Method: Composition-based stats. Identities = 40/280 (14%), Positives = 93/280 (33%), Gaps = 25/280 (8%) Query: 71 LKWLIS-EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--- 126 + + + + L+ N+ S+ + + + + + + + + R Sbjct: 5 VDAFLDNLWLEH----GLSQNTISSYRTDLKFLQSYFSQVELINLDFEQLYAFISYRSKN 60 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 ++ S + ++++R + W + NP + PK + T+ D+++ Sbjct: 61 GYSSRSNARMISTLRKFYNWLISTGQATTNPTTKLTLPKLAKRLPKDMTEVDVERLLQAP 120 Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGF 241 G + + E + +GLR S+ + N K V + + Sbjct: 121 DLTDDIGIRDKAMLELMYATGLRVSELVGLNTHDIDLNVGVIQVMGKGSKERIVPIGEYA 180 Query: 242 MKLLAMTP----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289 ++ L ++ FI+ +++ F K+ AG+ + S H + Sbjct: 181 LEYLHKYFEESRELLAKNFKEKAVFISKHSKRITRQSFWHRIKSYVLIAGINTDISPHTL 240 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + GA + G V YT + Sbjct: 241 RHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNR 280 >gi|297539666|ref|YP_003675435.1| tyrosine recombinase XerD [Methylotenera sp. 301] gi|297259013|gb|ADI30858.1| tyrosine recombinase XerD [Methylotenera sp. 301] Length = 302 Score = 138 bits (348), Expect = 9e-31, Method: Composition-based stats. Identities = 48/267 (17%), Positives = 96/267 (35%), Gaps = 22/267 (8%) Query: 86 SLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMR 141 L+ N+ S+ + + I+ + + + P S + + SMR Sbjct: 26 GLSKNTLESYRLDLTSFAYWLTPQNKQLLTVDQADIQQYLAVKFPQSQPRSISRLIASMR 85 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFE 197 +++ +R ++++P + ++ PK + +E++ + + G + R E Sbjct: 86 RFYRYLMRDNKISLDPTIQIQSPKLPRSLPKSLNEEEVIALLNAPNIVEAAGLRDRAMLE 145 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT-------- 248 L GLR S+ V + + ++ V + + + ++ Sbjct: 146 LLYACGLRVSELVGVKVTEVSVSDGVVRITGKGSKTRLVPMGEEAVDWISRYLSDARSAI 205 Query: 249 --PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304 + F+ N + M F K A AG+NK S H +R AT + GA Sbjct: 206 LQKRLCDALFVTNRGEAMTRQAFWYLIKRYALLAGINKHMSPHVLRHAFATHLLNHGADL 265 Query: 305 HELMATYGWKTVDQAETYTKGADRIRL 331 + G + + YT A R RL Sbjct: 266 RVVQMLLGHSDISTTQIYTHVA-RERL 291 >gi|325983273|ref|YP_004295675.1| tyrosine recombinase XerD [Nitrosomonas sp. AL212] gi|325532792|gb|ADZ27513.1| tyrosine recombinase XerD [Nitrosomonas sp. AL212] Length = 303 Score = 138 bits (348), Expect = 9e-31, Method: Composition-based stats. Identities = 54/306 (17%), Positives = 106/306 (34%), Gaps = 31/306 (10%) Query: 62 NSPRKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-----YRKIT 115 P L + + L+ N+ S+ + + + T Sbjct: 2 RVPELNTGLLDEFSDALWLED----GLSRNTLDSYRNDLQLFSEWLKRRNPSNSMLTEAT 57 Query: 116 TKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 + + SR K S+ + L+S++ +++ +RQ +AI+P L++E PK + Sbjct: 58 NSDLLEFLASRVAAKMKASTTSRELSSLKRFYRFLLRQGKIAIDPSLNIETPKLQRHLPE 117 Query: 173 PWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228 ++++++ S G + R E L SGLR S+ + ++ ++ Sbjct: 118 SLSEKEVELLLSAPDLAQPLGLRDRAMLEALYASGLRVSELINLKYSQVSMDMGVLRVMG 177 Query: 229 T-GTIITVELPDGFMKLLAMTPIG----------KETFFINNDKQKMNATQFSIWFKAKA 277 + + ++ L +T F+ M F K A Sbjct: 178 KGRKERLAPVGEESLQWLNRYTKEARPLLLNGIVTDTIFVTTRGAAMTRQAFWYLIKRYA 237 Query: 278 TKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 G+ K S H +R AT + GA + G + + YT A R RL + Sbjct: 238 QLVGIAKQLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHIA-RERLKQLH 296 Query: 336 SRRISS 341 ++ Sbjct: 297 AKHHPR 302 >gi|332086819|gb|EGI91955.1| tyrosine recombinase XerD [Shigella boydii 5216-82] Length = 298 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 42/279 (15%), Positives = 94/279 (33%), Gaps = 24/279 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRKH 128 I ++ + +LA N+ ++ ++ T + + + + Sbjct: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGVTLATAQSDDLQALLAERLEGGY 67 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +S+ + L+++R LF++ R+++ +P + PK + ++ +++ Sbjct: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 Query: 189 G----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243 + + E L +GLR S+ + + ++ V L + + Sbjct: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187 Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290 L + F + Q+M F K A AG++ S H +R Sbjct: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + GA + G + + YT A Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286 >gi|220922617|ref|YP_002497919.1| integrase family protein [Methylobacterium nodulans ORS 2060] gi|219947224|gb|ACL57616.1| integrase family protein [Methylobacterium nodulans ORS 2060] Length = 421 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 60/356 (16%), Positives = 121/356 (33%), Gaps = 28/356 (7%) Query: 13 KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 + + RR LP P + A+ AL + + + ++ +K T Sbjct: 59 QRTDAGWTWAWV--APSHRRHPLPDPRAEGGMEAFWRALDTAAEREKLGDAEDRK--TFA 114 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132 LI+ YR+ A + L+ ++ +E + I GD +TT + ++S + TP+ Sbjct: 115 ALIALYREHAIYTKLSALTQRDYERHLRLIAEFWGDDPVADLTTVDAQKAIDSFQATPAV 174 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 A F + L + + + + N + E+ + + PW + F G Sbjct: 175 ARYFRAVLSRLIAFGIPRGFATANVVEATEKVAHEVDPHEPWPDWAFETFFEHARVGL-- 232 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252 L LY+G R D + N + +KTG + V + + ++L T + Sbjct: 233 HLPVYSALYTGQRSIDVIPMHRPAVGANAIEMIARKTGAAVYVPIHSEYREILTRTHVDH 292 Query: 253 ETFFINNDKQKMNATQFSIWFKA----------------KATKAGVNKS-----AHGVRK 291 + D + ++ A HG+RK Sbjct: 293 PALHLREDGTPWTLGAYRTAWQRDFTSINAKGQPTTASPAKKAAMQRLREGGFVFHGLRK 352 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347 + + + G T E+ A + Y + ++ RL + +++ Sbjct: 353 NAVNMLLETGCTEAEVSAIVE-MSEQMVRHYARDVNKRRLAVNAMKKLEEGWAETR 407 >gi|309793966|ref|ZP_07688391.1| tyrosine recombinase XerD [Escherichia coli MS 145-7] gi|308122373|gb|EFO59635.1| tyrosine recombinase XerD [Escherichia coli MS 145-7] Length = 298 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 42/279 (15%), Positives = 94/279 (33%), Gaps = 24/279 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRKH 128 I ++ + +LA N+ ++ ++ T + + + + Sbjct: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +S+ + L+++R LF++ R+++ +P + PK + ++ +++ Sbjct: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 Query: 189 G----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243 + + E L +GLR S+ + + ++ V L + + Sbjct: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVSLGEEAVY 187 Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290 L + F + Q+M F K A AG++ S H +R Sbjct: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + GA + G + + YT A Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286 >gi|288803482|ref|ZP_06408914.1| integrase/recombinase XerD [Prevotella melaninogenica D18] gi|288334092|gb|EFC72535.1| integrase/recombinase XerD [Prevotella melaninogenica D18] Length = 314 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 52/276 (18%), Positives = 98/276 (35%), Gaps = 23/276 (8%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVES 125 K ++S YR+ + N+ ++ D++ R + K + + + Sbjct: 8 KDIVSRYRRYLKLEKGYSANTLDAYMRDVDKLFRYLAVEQVDVLDVKLEDLEYFAAFISD 67 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 P S + L+ +R +++ V Y+ ++P +E PK+ + ++ + Sbjct: 68 LGIGPRSLARILSGVRQFYRFLVIDGYLEVDPTELLESPKQPDHLPEVLSTAEVDLLEQA 127 Query: 186 W----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDG 240 EG + R E L GLR S+ + +L I+ V + Sbjct: 128 IDLSKWEGHRNRAIIEVLFSCGLRVSELTNLKLSNLYIEEQYIRVMGKGSKERLVPISPR 187 Query: 241 FMKLLAMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKAGVNKS--AHG 288 + L + I N Q + T I K A +AG+ K+ H Sbjct: 188 ALDELNYWFADRNVMKIKPGEEDYVFLNRRGQHLTRTMILIMIKRYAVEAGIKKTISPHT 247 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT + GA + A G +++ E YT Sbjct: 248 LRHSFATSLLEGGADLRAIQAMLGHESIGTTEIYTH 283 >gi|240949807|ref|ZP_04754136.1| site-specific tyrosine recombinase XerD [Actinobacillus minor NM305] gi|240295724|gb|EER46419.1| site-specific tyrosine recombinase XerD [Actinobacillus minor NM305] Length = 297 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 41/285 (14%), Positives = 95/285 (33%), Gaps = 24/285 (8%) Query: 70 TLKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVE 124 +L ++ ++ + L+ N+ S+ + T + Sbjct: 3 SLDPIVEQFLDTLWQEHGLSDNTVSSYRLDLSLFTEWLDEPRAFLTVDHHTLQEFLGYRF 62 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + + SS+++ L+ +R F++ + Y +P + P++ + + +E + Sbjct: 63 DQGYKASSSLRMLSCLRKFFRFLYLENYRKDDPTAMLISPRKPSRLPKTLNEEQVMDLLE 122 Query: 185 FWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----------- 229 + + + E L +GLR ++ ++L ++ Sbjct: 123 CPNPLDPIELRDKAMLELLYATGLRVTELISLTTENLSLRQGVVRIIGKGDKERLVPLGE 182 Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSA 286 ++ + + + + F + Q M F K A AG++ S Sbjct: 183 EASYWIQEFFQYGRGILLNNEPSNVVFPSKRGQMMTRQTFWHRIKHYAVLAGIDSEKLSP 242 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 H +R AT + GA + G + + YT A + RL Sbjct: 243 HVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVA-KARL 286 >gi|15601958|ref|NP_245030.1| site-specific tyrosine recombinase XerD [Pasteurella multocida subsp. multocida str. Pm70] gi|31563286|sp|Q9CPF0|XERD_PASMU RecName: Full=Tyrosine recombinase xerD gi|12720303|gb|AAK02177.1| XerD [Pasteurella multocida subsp. multocida str. Pm70] Length = 297 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 42/282 (14%), Positives = 95/282 (33%), Gaps = 24/282 (8%) Query: 72 KWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVES 125 LI + L+ N+ S+ +I+ + I + + Sbjct: 4 SALIELFLNEIWIEKQLSQNTIASYRLDLTALIQWLEKQQLTLINLDAIDLQTFLGERLN 63 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + + +S + L++MR LF++ R++Y +P + PK + + T++ + + Sbjct: 64 QGYKATSTARLLSAMRKLFQYLYREKYRTDDPSAVLSSPKLPSRLPKYLTEQQVTDLLNS 123 Query: 186 WSEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDG 240 + + E L +GLR ++ ++++ N ++ V + + Sbjct: 124 PDVDIPLELRDKAMMELLYATGLRVTELVSLTIENININQGIVRVVGKGNKERIVPIGEE 183 Query: 241 FMKLLAMTPIGKETFFINNDKQ----------KMNATQFSIWFKAKATKAGVN---KSAH 287 + + F ++ +M F K A + ++ S H Sbjct: 184 ATYWIRQFMLYGRPFLLHGQSSDVVFPSKRALQMTRQTFWHRIKHYALLSDIDINSLSPH 243 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R AT + GA + G + + YT A Sbjct: 244 VLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKER 285 >gi|312114222|ref|YP_004011818.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100] gi|311219351|gb|ADP70719.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100] Length = 393 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 44/337 (13%), Positives = 96/337 (28%), Gaps = 22/337 (6%) Query: 28 GHGRRIRLPYPHES-TFIPAYMSAL------TGSTPKREYINSPRKKPTTLKWLISEYRK 80 G R + + T A AL + R K + ++ Sbjct: 48 GRQRWVTIGKFGSPWTVETARREALRLLGEAASGNDIGAEKQAKRAKGLLFGHVADQFIA 107 Query: 81 SAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 H+ L +R S+ + + G I + + TP +A L+ Sbjct: 108 -IHFPKLKPRTRESYGTIIRLHLKPAFGATPIADIRKTSVATFHARHAETPRNANHALSV 166 Query: 140 MRVLFKWAVRQ--------EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 + + WA Q I +R + + + + + Sbjct: 167 LSKIMNWAEEQGLRPAESNPCRNIRKYRETKRERYLSPDELARLGAALAAAEDDKTVDPY 226 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL--AMTP 249 A LL +G R S+ ++ + + T V + L + Sbjct: 227 IIAAIRLLLLTGARLSEILTLRWTYVDTYRRILNLPDSKTGAKVIPLNQAALDLLGTLPR 286 Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELM 308 + F + + + ++ +AG++ H +R A++S G + + Sbjct: 287 LNSNPFVLVGRVEGQHLVNLQKPWRRIRKEAGLDDVRIHDLRHSFASVSVGLGGSLPVIG 346 Query: 309 ATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345 G Y AD ++ + +++ + Sbjct: 347 RVLGHSQPATTARYAHVAD--KVAAELVEAAGALIGT 381 >gi|227489005|ref|ZP_03919321.1| site-specific tyrosine recombinase XerD [Corynebacterium glucuronolyticum ATCC 51867] gi|227091081|gb|EEI26393.1| site-specific tyrosine recombinase XerD [Corynebacterium glucuronolyticum ATCC 51867] Length = 360 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 50/333 (15%), Positives = 99/333 (29%), Gaps = 26/333 (7%) Query: 26 RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW-LISEYRKSAHW 84 R RR + + R + R + T + ++ Sbjct: 20 RDWGERRGARGESRGAQTSQRETGDSADTADSRPLRSGNRHQAETSAAKVARQWITYLTV 79 Query: 85 -GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSM 140 A N+ S+ + G+ I I + ++S +S + L+++ Sbjct: 80 ERGKARNTIASYRRDLASYLDFVGERSLDSIAATDIEAFLQSLGRHGLAVTSVRRMLSTI 139 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAF 196 R +A + VA + + P + +++ + S + + Sbjct: 140 RGFHAFARDEGIVADDVAHDITPPAMPQHLPDTLSVDEINTLIESQAGDSAVALRNKALL 199 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSI----KTQKTGTIITVELPDGFMKLLAMTPIGK 252 E L +G R S+ V + + T K V + + + + Sbjct: 200 ELLYGTGARISEVLSLAVDDITALEETDGILVLTGKGDKQRIVPVGSHARQAVDAYLVRG 259 Query: 253 ETFFINNDK----------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300 + M+ K AT+AG+ + S H +R AT + Sbjct: 260 RPQLNKGKSAALFLNVRGGKAMSRQSAWQVVKQAATEAGITKDISPHTLRHSFATHLLEG 319 Query: 301 GATAHELMATYGWKTVDQAETYTK-GADRIRLG 332 GA + G +V + YT AD +R Sbjct: 320 GADVRSVQELLGHASVTTTQIYTHITADSLRAM 352 >gi|33600415|ref|NP_887975.1| site-specific tyrosine recombinase XerD [Bordetella bronchiseptica RB50] gi|33568014|emb|CAE31927.1| integrase/recombinase [Bordetella bronchiseptica RB50] Length = 310 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 47/307 (15%), Positives = 94/307 (30%), Gaps = 35/307 (11%) Query: 62 NSPRKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGD----------FD 110 ++P L I + + LA N+ ++ + + Sbjct: 4 SAPLASQADLDAFIDAVWLED----GLAANTLAAYRRDLSAFAQWLENPACHPGLATGAS 59 Query: 111 YRKITTKHIRSGVESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168 R+ I + +R ++A + L ++R + WA+R+ +PCL++ K+ Sbjct: 60 LREAGKGDIEAWFAARHAESRATTANRRLAALRRFYAWALRERLTPSDPCLTLVTAKQPP 119 Query: 169 EGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIF 222 + ++ + + + R E L +GLR S+ + + Sbjct: 120 RLPKTLSEAQVDALLQAPDLDTARGLRDRAMLETLYATGLRVSELVSVKALDVSLNEGVV 179 Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIW 272 + K G V L + F+ + M+ F Sbjct: 180 RVVMGKGGKDRLVPLGAEAAHWIERYAGSARPELLGARVADALFVTARAEPMSRQAFWQL 239 Query: 273 FKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 K A A + S H +R AT + GA + G + + YT A Sbjct: 240 VKKYALAADIRAPLSPHVLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERL 299 Query: 331 LGIKNSR 337 + + Sbjct: 300 KALHAAH 306 >gi|15678913|ref|NP_276030.1| integrase-recombinase protein [Methanothermobacter thermautotrophicus str. Delta H] gi|73920472|sp|O26979|XERCL_METTH RecName: Full=Probable tyrosine recombinase xerC-like gi|2621988|gb|AAB85391.1| integrase-recombinase protein [Methanothermobacter thermautotrophicus str. Delta H] Length = 311 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 42/304 (13%), Positives = 87/304 (28%), Gaps = 27/304 (8%) Query: 55 TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD----FD 110 + + LI +Y + + N+ +++S + +D Sbjct: 7 MKRESEERQGLLERYNFPELIEDYLIELEIRNYSPNTIKTYKSIVKNFYEFLMNEDDLYD 66 Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRK 167 R++ R ++ + ++ F+++ + + + Sbjct: 67 DRRVLRSFKRYIQYLKRDKKVTQNYIYLVTVVVKKFFEFSGIDCLEEVKAPKRTKSLPKS 126 Query: 168 TEGIRPWTKED-----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222 + + ++ RL L SGLR S+ + + + Sbjct: 127 LNEDEVKSLINAVEVADDGSVIRRFIKTRDRLILSLLYSSGLRVSELVSLRINDIDPDER 186 Query: 223 SIKTQKT-GTIITVELPDGFMKLLAMT----PIGKETFFINNDKQKMNATQFSIWFKAKA 277 +I+ + V + LL E F+N + + K A Sbjct: 187 TIRIRGKGDKDRIVLFDENTRDLLMDYLKRRIHESEYLFLNRFGDPLTPRYVQMMIKNYA 246 Query: 278 TKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA--------D 327 KAG+ K + H +R AT G + G + + YT D Sbjct: 247 RKAGIKKKVTPHILRHSFATHLLKNGVDIRAIQQLLGHSNLSTTQIYTSVDMQTLKNVYD 306 Query: 328 RIRL 331 R RL Sbjct: 307 RARL 310 >gi|153810458|ref|ZP_01963126.1| hypothetical protein RUMOBE_00839 [Ruminococcus obeum ATCC 29174] gi|149833637|gb|EDM88718.1| hypothetical protein RUMOBE_00839 [Ruminococcus obeum ATCC 29174] Length = 296 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 39/294 (13%), Positives = 103/294 (35%), Gaps = 24/294 (8%) Query: 72 KWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSGVESRK 127 + +I + + N+ IS+E ++ R + D+ ++T ++ ++ + Sbjct: 4 EKVIENFIAYMREAKKASQNTEISYERDLKKLARYLRNQKIMDFSEVTKTDLQGYLKELQ 63 Query: 128 HTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 S+ + + S+R L+ + +R + +P +++ PK + + + E++ + Sbjct: 64 KENLALSTISRNIASIRALYHYMIRTGKMQEDPSETLKPPKLEKKMPEILSVEEVDRLLK 123 Query: 185 FWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 + + + E + +G+R S+ + + + + + + + + Sbjct: 124 QPNLNTPKGIRDNAMMELMYATGMRVSELIHLQITDINLQMGYVICHDSEKERIIPIGNV 183 Query: 241 FMKLLAMTPIGKETFF----------INNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288 + FF N + M+ F K A AG+++ + H Sbjct: 184 SRNAILQYMEHSRGFFVKNKKESSLFTNCSGKSMSRQGFWKVLKGYAVDAGIHRDITPHT 243 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342 +R A GA + G + + Y G + R+ + Sbjct: 244 LRHSFAVHMLQNGADVKSVQEMLGHSDISSTQIYL-GMNVARMRDVYMKAHPRH 296 >gi|239993652|ref|ZP_04714176.1| tyrosine recombinase [Alteromonas macleodii ATCC 27126] Length = 306 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 42/282 (14%), Positives = 98/282 (34%), Gaps = 23/282 (8%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---H 128 + ++ L++++ +++ ++ + G +++ +T I+ + K H Sbjct: 13 QWLDKFLLHLQVERGLSLHTIKNYQRQLTEVAKLLGLYEWSGLTPSDIKRVMADAKMSGH 72 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +P S L+++R ++ + + + NP ++ PK+ + + ++MQQ + Sbjct: 73 SPRSIALRLSALRTFCQYLIDHQQLFSNPVEGIQAPKQGKPLPKQLSVDEMQQLLNASPR 132 Query: 189 GS--------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 S + FE L GLR S+ + + K + L Sbjct: 133 SSDDDEGMQLRDVAMFELLYGCGLRLSELTGLNLADCLKDGTVKVMGKGSKQRILPLGRH 192 Query: 241 FMKLLAMTPIGKETFFINN--------DKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290 K L + + K +++ Q + A++ + S H +R Sbjct: 193 AQKALNAWLKVRPAYASPYESAVFVSKRKTRISNRQVANRLDKMASEQSLSQKVSPHKLR 252 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 AT ++ + G + + YT D L Sbjct: 253 HSFATHVLESSGDLRAVQELLGHANLSTTQVYTH-LDFQHLA 293 >gi|205373757|ref|ZP_03226559.1| site-specific tyrosine recombinase XerD [Bacillus coahuilensis m4-4] Length = 297 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 39/270 (14%), Positives = 95/270 (35%), Gaps = 25/270 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVESRKHTPS---SAIQFL 137 L+ N+ +S+E + D + +I + K + + + Sbjct: 16 RGLSSNTLVSYERDLKSYCNHLKNTEQIEDLNHVVRGNIIEFLAFLKDQGKSSKTIARHI 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193 S+R ++ +R++ +P + ++ PK + + + ++++ + G + + Sbjct: 76 ASIRSFHQFLLREKITDHDPTVHIDTPKAERSLPKVLSLDEVETLLDSPNLQKPSGIRDK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT---- 248 E L +G+R S+ ++ + + ++ + L + + +L Sbjct: 136 AMLEILYATGIRVSELIELNLEDVHLTMGFVRCIGKGNKERIIPLGNHAITILKEYLEKA 195 Query: 249 -------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 + F+N+ ++ F K ATKA + K + H +R AT + Sbjct: 196 RPKLRSSKYRTDALFLNHHGNRLTRQGFWKILKGLATKANIQKELTPHTLRHSFATHLLE 255 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRI 329 GA + G + + YT Sbjct: 256 NGADLRAVQEMLGHADISTTQIYTHVTKTR 285 >gi|94969096|ref|YP_591144.1| phage integrase [Candidatus Koribacter versatilis Ellin345] gi|94551146|gb|ABF41070.1| phage integrase [Candidatus Koribacter versatilis Ellin345] Length = 359 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 50/351 (14%), Positives = 113/351 (32%), Gaps = 12/351 (3%) Query: 2 TPSLRLPP--FVTKERTRHGKII--YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPK 57 P + P V + + R G+ + + G R+ RL T ++A + Sbjct: 1 MPRRKTPDRDGVYQRKDRPGQFWASWTDQNGKRRQRRLRGVFTLTQAKELLAAAQLRVER 60 Query: 58 REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117 + + + + + + + G I Sbjct: 61 IKVLGFAEPTKERFEKIEARFLLHQRARLTKAGYERERGVVETHLHDYFGQMQLALIRRG 120 Query: 118 HIRSGVESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 I + V R +P++ + L +++ LF+ V E + +NP V+ PK +R Sbjct: 121 DIANFVTKRAAEVSPATVAKELVTLKHLFRLCVEWELLVLNPATGVKAPKVAPGRVRWLQ 180 Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 E+++ + +P +G+R S+ + + + Sbjct: 181 PEELRALLQACPDWLRP--IAGLAAATGMRRSEVLGVRWFDVDRRNGCLTL-RQTKNNES 237 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294 + L + ++ K+ Q S+ F + G+ + H +R A Sbjct: 238 RIVFLNQSALHVIDSLRKGKSSEKLFPKVTPEQVSMGFLRTCRELGIEDFRWHDLRHCFA 297 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345 ++ +GA ++ G K + + Y+ + +RR +V+ Sbjct: 298 SLLRQSGADLQDVAELLGHKDLRMTKRYSHLSPAHLSA--AARRFDAVLGE 346 >gi|119719024|ref|YP_919519.1| phage integrase family protein [Thermofilum pendens Hrk 5] gi|119524144|gb|ABL77516.1| phage integrase family protein [Thermofilum pendens Hrk 5] Length = 295 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 55/283 (19%), Positives = 102/283 (36%), Gaps = 15/283 (5%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRKH 128 LI Y + + + SF+S ++ +R GD ++T + + + + Sbjct: 14 DELIDLYISHLVARNRSEKTIKSFKSILEEFVRFLGDRHVSQVTVYDVDFFLAHLRRKGW 73 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 S +++ ++ + E PKR+ R E++ + + E Sbjct: 74 KKDSIYTAAVAVKRFLEFLGLGGNI-----AGFELPKREKRLPRYLEAEEVFRMVNAA-E 127 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAM 247 + +L L +GLR S+ V + +++ + V PD LL Sbjct: 128 NLRDKLIVLLLFTTGLRVSELVSLRVSDVDLEKRTLRVRGKGSKERLVYFPDYVADLLRS 187 Query: 248 TPI--GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303 E F + + ++ T K KAG+ K + H +R AT+S AG Sbjct: 188 YMKGLNSEWLFPSETAEHIHYTTVERVLKRLKEKAGIEKKVTPHTLRHSFATLSLAAGLD 247 Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346 E+ G ++ + Y R RL R SS++D Sbjct: 248 IREIQELLGHSNLNTTQVYAH-VSRERLKRDYERVWSSLLDPR 289 >gi|330969023|gb|EGH69089.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. aceris str. M302273PT] Length = 298 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 54/291 (18%), Positives = 108/291 (37%), Gaps = 24/291 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT--TKHIRSGVESR---K 127 LI + + L+ N+R S+ S + + I+ + I + R Sbjct: 8 LIDRFLDALWLEKGLSDNTRDSYRSDLALFNGWLQERNVDLISAGREVILDHLAWRVENA 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 + P S +FL+ R +++ +R++ +A++P L ++ P+ + ++ D++ + Sbjct: 68 YKPRSTARFLSGARGFYRYLLREKLIAVDPTLQIDMPQLGKPLPKSLSEADVEALLAAPD 127 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 G + R E L GLR ++ ++ + ++ V + + + Sbjct: 128 LSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEESI 187 Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290 + G F + +M F K +AT AG+ KS H +R Sbjct: 188 VWVERYLRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGIGKSLSPHTLR 247 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 AT + GA + G + + YT A R RL ++R Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQEMHARHHPR 297 >gi|254513968|ref|ZP_05126029.1| tyrosine recombinase XerD [gamma proteobacterium NOR5-3] gi|219676211|gb|EED32576.1| tyrosine recombinase XerD [gamma proteobacterium NOR5-3] Length = 302 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 50/285 (17%), Positives = 96/285 (33%), Gaps = 23/285 (8%) Query: 74 LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESRK 127 L+ Y + L+ N+ ++ R + + + + + + K Sbjct: 12 LLETYLDAVWMEKGLSENTLAAYRRDLQSFARWASTRNRSTTKVARTDIEAYLAYLLAHK 71 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +P SA + L+ +R ++ +R + +P L ++ P+ + ++ D+ + Sbjct: 72 RSPRSAARALSCLRGYYRHLLRSGQLKEDPTLGLDSPRLGRPLPKTLSEADVDALLQAPN 131 Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM 242 G + R E L GLR S+ V L N ++ G V + + + Sbjct: 132 LEELIGFRDRCMLELLYACGLRVSELTGLTVSQLSLNQGVVRISGKGGKERLVPVGEEAL 191 Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 L F + Q M F K A AG++K S H +R Sbjct: 192 HWLQRYLREIRPQLLGETSSEVLFPSRRAQMMTRQTFWHRIKQHAITAGIHKPISPHVLR 251 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 AT + GA + G + + YT A + + Sbjct: 252 HAFATHLVNHGADLRVVQLLLGHSDLSTTQIYTHVARQRLQSLHA 296 >gi|126650133|ref|ZP_01722366.1| site-specific tyrosine recombinase XerD [Bacillus sp. B14905] gi|126593305|gb|EAZ87267.1| site-specific tyrosine recombinase XerD [Bacillus sp. B14905] Length = 300 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 44/285 (15%), Positives = 101/285 (35%), Gaps = 26/285 (9%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVES 125 ++ + +Y L+VN+ S+ + + G D+ ++ I +E Sbjct: 4 FQYAVEDYIHFIQVERQLSVNTLASYRRDLESYVNFLQNAEGMADFNRVERTTILRHLEQ 63 Query: 126 RKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + + + ++S+R ++ +R++ +P + +E P + + + E+++ Sbjct: 64 LRAQGKTSRTIARHISSIRSFHQFLLREKRAESDPTVHLEMPTIEQKLPNILSIEEIEAL 123 Query: 183 KSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVEL 237 + + G + E L SG+R S+ + + + ++ G + L Sbjct: 124 LTAPNRSKPQGIRDLAMLELLYGSGMRISELIALDLADIHLTMGFVRVFGKGGKERIIPL 183 Query: 238 PDGFMKL-----------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284 + L + FFIN +++ K A KAG+ Sbjct: 184 GKSALSAISTYLNNARGQLQGKYPKTDAFFINQRGKRLTRQGCWKLMKEHALKAGIQHEL 243 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + H +R AT + GA + G + + YT + Sbjct: 244 TPHTLRHSFATHLVENGADLRAVQEMLGHADISTTQIYTHISKTR 288 >gi|228470587|ref|ZP_04055444.1| tyrosine recombinase XerD [Porphyromonas uenonis 60-3] gi|228307714|gb|EEK16690.1| tyrosine recombinase XerD [Porphyromonas uenonis 60-3] Length = 309 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 52/292 (17%), Positives = 95/292 (32%), Gaps = 24/292 (8%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR--- 126 LI Y+ L+ NS S+ D++ GD R++T +H+ + Sbjct: 8 QLIQRYKTYLRLEQHLSDNSIDSYLYDVDKLYTYIGDMGLSLREVTLQHLNNFAAHLLDL 67 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 + S + L+ ++ F++ +E + +P ++ P + T ++ Sbjct: 68 GISMRSLARVLSGVKSFFRFLSLEEEIERDPTDMLQTPPIPKKLPEVLTLAEIDSLLGAI 127 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDG- 240 E S+ E L GLR S+ C + + K V + Sbjct: 128 DEERPEASRDTAIIEVLYSCGLRVSELCGLTYSDVFLDEGYLHVWGKGRKERLVPMSPKA 187 Query: 241 ---FMKLLAMTPIGKETFFINNDKQ------KMNATQFSIWFKAKATKAGVNK--SAHGV 289 + L + ++ + A AG++K S H + Sbjct: 188 VSDVQRYLNDPCRYNAKPEYDQYIFISRRGQPISRITVFCLIRTLAELAGIHKEISPHTL 247 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 R AT + GA H + G +++ E YT DR L R Sbjct: 248 RHSFATHLLEGGADLHAIQLMMGHESIATTEIYTH-VDRTALRADILRYHPR 298 >gi|85712976|ref|ZP_01044015.1| Site-specific recombinase [Idiomarina baltica OS145] gi|85693214|gb|EAQ31173.1| Site-specific recombinase [Idiomarina baltica OS145] Length = 301 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 45/277 (16%), Positives = 98/277 (35%), Gaps = 22/277 (7%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDY--RKITTKHIRSGVESRKH--- 128 I ++ + ++ N++ ++ S + ++T+ ++ + R+ Sbjct: 13 IEQFVEHLWLAHGVSENTQAAYRSDLKKFCEFLAQHRLGLHQVTSTVVQDYLLWRRSQGL 72 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +P S +FL++M+ L +A++ + +P ++RPK T+ D+ Sbjct: 73 SPRSTSRFLSAMKKLTPYALKSGWFVTDPIAKLKRPKMSPAVPHSLTESDVLSLLDAPDV 132 Query: 189 GS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243 + + R E L +GLR ++ R + ++ V L + ++ Sbjct: 133 DTPIGLRDRAMLEVLYATGLRVTELVRLQYDQVSLAQGLVRVVGKGDKERLVPLGEEAIE 192 Query: 244 LLAMTP---------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKF 292 L+ FI + F + A +A + + S H +R Sbjct: 193 WLSRYMKSGRPVLSERQSGWVFITQRGTLLTRQAFWYRIRTYAEQAQINSHLSPHTLRHA 252 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + GA L G + + YT+ A Sbjct: 253 FATHLLNHGADLRVLQMLLGHSDLSTTQIYTQVAKER 289 >gi|302185529|ref|ZP_07262202.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. syringae 642] Length = 298 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 53/291 (18%), Positives = 110/291 (37%), Gaps = 24/291 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT--TKHIRSGVESR---K 127 LI ++ + L+ N+R S+ S + + I+ + I + R Sbjct: 8 LIDQFLDALWLEKGLSDNTRDSYRSDLALFHGWLQERNVDLISAGREVILDHLAWRVENA 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 + P S +FL+ R +++ +R++ ++++P L ++ P+ + ++ D++ + Sbjct: 68 YKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADVEALLAAPD 127 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 G + R E L GLR ++ ++ + ++ V + + + Sbjct: 128 LSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEESI 187 Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290 + G F + ++M F K +AT AG+ KS H +R Sbjct: 188 VWVERYLRGARDELLGGKPSDVLFPSTRGEQMTRQTFWHRIKHQATVAGIGKSLSPHTLR 247 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 AT + GA + G + + YT A R RL ++R Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQEMHARHHPR 297 >gi|88855485|ref|ZP_01130149.1| tyrosine recombinase [marine actinobacterium PHSC20C1] gi|88815392|gb|EAR25250.1| tyrosine recombinase [marine actinobacterium PHSC20C1] Length = 311 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 47/290 (16%), Positives = 92/290 (31%), Gaps = 28/290 (9%) Query: 62 NSPRKKPTT-LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRK---ITT 116 S R T L + + L+ N+ ++ D + + D + IT Sbjct: 3 ESTRSGAGTALAVASERFLRHLAIERGLSQNTLAAYRRDLDSYLGFLSERDLAEPSAITA 62 Query: 117 KHIRSGVESRKHTP------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170 + + S + P SS + L+++R L + V + V+ + V PK+ Sbjct: 63 DDVAAFAHSLRVDPERPLAASSVARMLSTVRGLHTFFVDESLVSDDVAHKVAIPKQTMRL 122 Query: 171 IRPWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226 + T E M + + + E L +G R S+ V + + Sbjct: 123 PKAITIEQMSSVLASFAGDDVVSLRNTALLELLYATGARVSEVTALNVDDMIDGDVVRLL 182 Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETF-----------FINNDKQKMNATQFSIWFKA 275 K V + + + F+ +++ + ++ Sbjct: 183 GKGNKQRIVPVGSFAQAAIEKYLVRSRPVLSAKGTATPALFLGARGARLSRQNVWLIIQS 242 Query: 276 KATK--AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 A + G++ S H R AT GA + G +V + YT Sbjct: 243 AAERVNLGLDISPHTFRHSFATHLLSGGADVRVVQELLGHSSVATTQIYT 292 >gi|262037917|ref|ZP_06011342.1| tyrosine recombinase XerC [Leptotrichia goodfellowii F0264] gi|261748060|gb|EEY35474.1| tyrosine recombinase XerC [Leptotrichia goodfellowii F0264] Length = 315 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 49/289 (16%), Positives = 95/289 (32%), Gaps = 33/289 (11%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF-------DYRKITTKHIRSG 122 LK + ++ + N+ S++ Q I ++ + IT + + Sbjct: 10 LKTYVDKFLYYEEVITGKSYNTIKSYKKDIMQFIDYLNEYEEIDEFENVETITFRSFIAY 69 Query: 123 ---------VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 E + + S + ++++R FK+ ++ V N + PK + E Sbjct: 70 LNSTSKENNDERKVVSKRSINRKISALRTFFKYLQEKKIVKTNKVNYITMPKFEKELPNV 129 Query: 174 WTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229 +ED+ + + + G + RL E L SG+R S+ + ++ Sbjct: 130 LGREDINKLRDAVNTSKITGIRDRLIIELLYSSGIRASELIDLNEYMINIEERELRVIGK 189 Query: 230 -GTIITVELPDGFMKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWFKAKATK 279 + K L K+ + N K K+ A K Sbjct: 190 GNKERITFFSENSKKWLEKYIEEKKEKYSNYTKDVVFANSKGEKLTTRSLRRLIADYAKK 249 Query: 280 AGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 AG+ K + H R AT + G L G ++ + YT + Sbjct: 250 AGLQKEVTPHVFRHTFATELLNNGVDIRYLQELLGHSSISTTQVYTHVS 298 >gi|145298066|ref|YP_001140907.1| site-specific integrase/recombinase [Aeromonas salmonicida subsp. salmonicida A449] gi|142850838|gb|ABO89159.1| site-specific integrase/recombinase [Aeromonas salmonicida subsp. salmonicida A449] Length = 303 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 46/283 (16%), Positives = 97/283 (34%), Gaps = 23/283 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG----DFDYRKITT-KHIRSGVESRK 127 LI + + L+ N+ S+ S ++ + +H + + Sbjct: 13 LIEPFLDALWLERGLSDNTVSSYRSDLEKFAFWLDGQGRSLLLAGMDDIQHYLAWRVDHQ 72 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFK 183 SS +FL+++R +++ R++ + +P + +E PK + ++ ++ Q Sbjct: 73 FAASSTARFLSALRRFYQYLNREKLRSDDPTVLLEGPKLPKKLPSDLSEAEVEALLQSPL 132 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 + + E L +GLR S+ +H+ ++ V + + + Sbjct: 133 VDDPLELRDKAMLELLYATGLRVSELVGLTAEHVSLRQGLVRVVGKGNKERLVPMGEEAV 192 Query: 243 KLLAMTPIGKET----------FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290 L T F + + M F K A +AG+ S H +R Sbjct: 193 HWLERYYREARTLLLGGTSSDVVFPSKQARMMTRQTFWHRIKLYAQRAGIRGELSPHTLR 252 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 AT + GA + G + + YT A+ + Sbjct: 253 HAFATHLLNHGADLRVVQMLLGHADLSTTQIYTHVANERLKAL 295 >gi|269120433|ref|YP_003308610.1| integrase family protein [Sebaldella termitidis ATCC 33386] gi|268614311|gb|ACZ08679.1| integrase family protein [Sebaldella termitidis ATCC 33386] Length = 307 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 47/264 (17%), Positives = 85/264 (32%), Gaps = 23/264 (8%) Query: 86 SLAVNSRISFESYFDQIIRKS-GDFDYRK------ITTKHIRSGVESRKHTPSSAIQFLT 138 + N+ + Q I G+ + T + + + + S + ++ Sbjct: 26 GKSYNTIRGYRKDITQFIDYISGNEEIFDYNKVEVFTVRSFIAYSNNNEVGKRSINRKIS 85 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194 ++R F + Q V N + V PK + E TK+D+ + ++ G + RL Sbjct: 86 ALRTFFAYLKEQNIVEANKLIYVNMPKFEKELPTVLTKDDINKLRNVIDISKVTGIRDRL 145 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQ----------NNIFSIKTQKTGTIITVELPDGFMKL 244 EFL SGLR S+ + T + K Sbjct: 146 IIEFLYSSGLRSSELVSLSELMINLEEREVRVLGKGNKERVTFFSENARKWYEKYISAKR 205 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302 F+N+ +++ A KAG+NK + H R AT + Sbjct: 206 NEYKNYTPNIVFVNSRGERITTRSLRRLIADYAEKAGINKEVTPHVFRHSFATTLLNNKV 265 Query: 303 TAHELMATYGWKTVDQAETYTKGA 326 L G ++ + YT + Sbjct: 266 DIRYLQELLGHSSISTTQVYTHVS 289 >gi|307718592|ref|YP_003874124.1| tyrosine recombinase XerC [Spirochaeta thermophila DSM 6192] gi|306532317|gb|ADN01851.1| tyrosine recombinase XerC [Spirochaeta thermophila DSM 6192] Length = 312 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 49/294 (16%), Positives = 95/294 (32%), Gaps = 32/294 (10%) Query: 74 LISEYRKSA-HWGSLAVNSRISFESYF---DQIIRKSGDFDYRKITTKHIRSGVESR--- 126 LI + H L+ + S+ + + K G D T + IR V Sbjct: 16 LIDRFLAHLSHMRGLSEATVRSYRNDLVKVGAFLEKLG-TDLVSATREDIRHCVAEYTLA 74 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-- 184 + PSS + L+S+R +++ ++ + +P + K ++++ + Sbjct: 75 RQAPSSINRMLSSLRSWYRFLRKEGVRSDSPMEGISSVKAGKRLPSFLFEDEVDRLLDIE 134 Query: 185 -FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM 242 + R E L +G R + +Q + + G + L G Sbjct: 135 GSDFASLRDRALLEVLYSTGCRVQELVSLTTSGVQVSRGWCVVKGKGGKERLLFLGLGAR 194 Query: 243 KLL------------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288 K L M + F+N + + + +A + G+ K S H Sbjct: 195 KALAAYLPLRQALLERMGRREEGALFVNQKGSPLTPRGVAYIIERRAREKGLEKRISPHV 254 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342 R AT GA + G ++ + YT L + +R+ Sbjct: 255 FRHSFATHVLSRGADLRVVQEMLGHASLSTTQVYTH------LSLPALKRMYRK 302 >gi|170765975|ref|ZP_02900786.1| tyrosine recombinase XerD [Escherichia albertii TW07627] gi|170125121|gb|EDS94052.1| tyrosine recombinase XerD [Escherichia albertii TW07627] Length = 298 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 41/279 (14%), Positives = 94/279 (33%), Gaps = 24/279 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRKH 128 I ++ + +LA N+ ++ ++ T + + + + Sbjct: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +S+ + L+++R LF++ R+++ +P + P+ + ++ +++ Sbjct: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAYLASPRLPQRLPKDLSEAQVERLLQAPLI 127 Query: 189 G----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243 + + E L +GLR S+ + + ++ V L + + Sbjct: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187 Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290 L + F + Q+M F K A AG++ S H +R Sbjct: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + GA + G + + YT A Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286 >gi|299538357|ref|ZP_07051640.1| tyrosine recombinase xerD [Lysinibacillus fusiformis ZC1] gi|298725944|gb|EFI66536.1| tyrosine recombinase xerD [Lysinibacillus fusiformis ZC1] Length = 300 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 44/285 (15%), Positives = 101/285 (35%), Gaps = 26/285 (9%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVES 125 ++ + +Y L+VN+ S+ + + G D+ + I +E Sbjct: 4 FQYAVEDYIHFIQVERQLSVNTLASYRRDLESYVHFLKEAEGMSDFSVVERTTILRHLEQ 63 Query: 126 RKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + + + ++S+R ++ +R++ +P + +E P + + + E+++ Sbjct: 64 LRAQGKTSRTVARHISSIRSFHQFLLREKRAETDPTVHLEMPTIEQKLPNILSIEEIEAL 123 Query: 183 KSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVEL 237 + ++ G + E L SG+R S+ + + + ++ G + L Sbjct: 124 LTAPNKSKPQGIRDLAMLELLYGSGMRISELIALDLADIHLTMGFVRVFGKGGKERIIPL 183 Query: 238 PDGFMKL-----------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284 + L + FFIN +++ K A KAG+ Sbjct: 184 GKSALSAINAYLNGARGQLQGKYPKTDAFFINQRGKRLTRQGCWKLMKEHALKAGIQHEL 243 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + H +R AT + GA + G + + YT + Sbjct: 244 TPHTLRHSFATHLVENGADLRAVQEMLGHADISTTQIYTHISKTR 288 >gi|225388004|ref|ZP_03757728.1| hypothetical protein CLOSTASPAR_01737 [Clostridium asparagiforme DSM 15981] gi|225045926|gb|EEG56172.1| hypothetical protein CLOSTASPAR_01737 [Clostridium asparagiforme DSM 15981] Length = 283 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 43/268 (16%), Positives = 92/268 (34%), Gaps = 24/268 (8%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGV---ESRKHTPS 131 Y ++ + N+ IS++ Q+ + +T + S + E + Sbjct: 11 YLENE--KKASKNTVISYQRDLVQLAAYLEAKGITEAEKVTKTSLNSYILYLEKEGKATT 68 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS- 190 + + L S++ F + +R+ + +P ++ PK + + T ++ + + Sbjct: 69 TISRELASIKAFFHYELREGRIRRDPAEFIKAPKVEKKAPVILTVNEVNALLCQPGDRTP 128 Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247 + + E L +G+R S+ + + + I + V + L Sbjct: 129 KELRDKAMLELLYATGIRVSELISLKLTDVNMQVGYITCRDRSKERMVPFGKNARQALVQ 188 Query: 248 TP----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSAT 295 + F N + Q M+ F K KAG+ + + H +R A Sbjct: 189 YMGEARTELLKGKNSDWLFTNCNGQAMSRQGFWKLIKQYGEKAGIKSDITPHTLRHSFAA 248 Query: 296 ISADAGATAHELMATYGWKTVDQAETYT 323 +GA H + A G + YT Sbjct: 249 HLIRSGADIHAVQAMLGHSDTATTQIYT 276 >gi|323154775|gb|EFZ40973.1| tyrosine recombinase XerD [Escherichia coli EPECa14] Length = 298 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 42/279 (15%), Positives = 94/279 (33%), Gaps = 24/279 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRKH 128 I ++ + +LA N+ ++ ++ T + + + + Sbjct: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLYHRGLTLATAQSDDLQALLAERLEGGY 67 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +S+ + L+++R LF++ R+++ +P + PK + ++ +++ Sbjct: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 Query: 189 G----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243 + + E L +GLR S+ + + ++ V L + + Sbjct: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187 Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290 L + F + Q+M F K A AG++ S H +R Sbjct: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + GA + G + + YT A Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286 >gi|15803430|ref|NP_289463.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H7 EDL933] gi|15833020|ref|NP_311793.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H7 str. Sakai] gi|168760022|ref|ZP_02785029.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4501] gi|217327493|ref|ZP_03443576.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. TW14588] gi|34222933|sp|Q8X574|XERD_ECO57 RecName: Full=Tyrosine recombinase xerD gi|12517420|gb|AAG58022.1|AE005519_8 site-specific recombinase [Escherichia coli O157:H7 str. EDL933] gi|13363238|dbj|BAB37189.1| site-specific recombinase [Escherichia coli O157:H7 str. Sakai] gi|189369440|gb|EDU87856.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4501] gi|209760580|gb|ACI78602.1| site-specific recombinase [Escherichia coli] gi|217319860|gb|EEC28285.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. TW14588] gi|326339022|gb|EGD62837.1| Tyrosine recombinase XerD [Escherichia coli O157:H7 str. 1044] Length = 298 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 41/279 (14%), Positives = 93/279 (33%), Gaps = 24/279 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRKH 128 I ++ + +LA N+ ++ ++ T + + + + Sbjct: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +S+ + L+++R LF++ R+++ +P + PK + ++ +++ Sbjct: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 Query: 189 G----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243 + + E L +GLR S+ + + ++ V L + + Sbjct: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187 Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290 L + F + Q+M K A AG++ S H +R Sbjct: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTLWHRIKHYAVLAGIDSEKLSPHVLR 247 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + GA + G + + YT A Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286 >gi|304396715|ref|ZP_07378595.1| tyrosine recombinase XerD [Pantoea sp. aB] gi|304355511|gb|EFM19878.1| tyrosine recombinase XerD [Pantoea sp. aB] Length = 297 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 47/282 (16%), Positives = 97/282 (34%), Gaps = 24/282 (8%) Query: 72 KWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESR-- 126 L ++ + +LA N+ S+ + +T ++ + R Sbjct: 4 SDLTEQFLDALWIERNLAQNTLSSYRQDLQTLTGWLAHHQLTLLSVTPLDLQQFLAERLE 63 Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + +S+ + L++MR LF++ R++ +P + PK + ++ +++ Sbjct: 64 GGYKATSSARLLSAMRRLFQYLYREKLRPDDPSALLSAPKLPQRLPKDLSEAQVERLLQA 123 Query: 186 WSEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDG 240 + + + E L +GLR S+ + + ++ V L + Sbjct: 124 PNIDIPLELRDKAMLELLYATGLRVSELIGLTLSDISLRQGVVRVIGKGDKERLVPLGEE 183 Query: 241 FMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287 + L + F +N Q+M F K AT AG++ S H Sbjct: 184 AVYWLEQYMEHGRPWLLNGQTLDVMFPSNRAQQMTRQTFWHRIKHYATLAGIDSEKLSPH 243 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R AT + GA + G + + YT A Sbjct: 244 VMRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 285 >gi|315268949|gb|ADT95802.1| tyrosine recombinase XerD [Shewanella baltica OS678] Length = 300 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 44/283 (15%), Positives = 90/283 (31%), Gaps = 28/283 (9%) Query: 74 LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRK 127 LI + L+ N+ ++ + R + + + + Sbjct: 10 LIDVFLDDLWSNKGLSDNTLSAYRTDLRHFDRYQAQQGVTLLSVSQADVRAYLAFRVEQD 69 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +S+ + L+S+R + + V+ + ++ +P VE PK ++ + + S + Sbjct: 70 FARTSSARLLSSLRRFYTYLVQTKQISADPMALVESPKLTRHLPDSLSESQVDRLLSEPN 129 Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-------------G 230 + + E L +GLR S+ ++ + ++ Sbjct: 130 VEDAVECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVRIVGKGGKERLVPLGELAI 189 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHG 288 T + + +LL F K A +AG+ S H Sbjct: 190 TEVESYMKFARQELLGNKQSDVVFPSKRGQMM--TRQTFWHRIKLYALRAGIETALSPHT 247 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +R AT + GA + G + + YT A R RL Sbjct: 248 LRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVA-RARL 289 >gi|110833664|ref|YP_692523.1| integrase/recombinase XerD [Alcanivorax borkumensis SK2] gi|110646775|emb|CAL16251.1| integrase/recombinase XerD [Alcanivorax borkumensis SK2] Length = 312 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 48/284 (16%), Positives = 96/284 (33%), Gaps = 30/284 (10%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR-----SGVESR 126 WL ++ + L+ +S ++ Q+ + + + + + Sbjct: 19 SWLDQQWLE----KGLSEHSLSNYRRDLSQLACWLQGQRVALLGCERYQLLEFLAYRHQQ 74 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + S + L++++ ++W R+ ++ +P L +ERPK + ++ D++ + Sbjct: 75 GLSARSVARQLSAVKSFYRWLKREGRISEDPALLIERPKLGRPLPKTLSEADVEALLAAP 134 Query: 187 ----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 G + R E L +GLR ++ + I+ V L + Sbjct: 135 DLSTPLGLRDRAMLEVLYATGLRVTELVTLTQSQVNPRQGVIRVIGKGDKERLVPLGEEA 194 Query: 242 MKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285 + L P +E F + M F K A AGV S Sbjct: 195 LHWLERYLREGRALLMGGAATPGNQELLFPSRRGTCMTRQTFWHRIKQLAVVAGVQKKLS 254 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 H +R AT + GA + G + + YT A + Sbjct: 255 PHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAQQR 298 >gi|303241363|ref|ZP_07327867.1| integrase family protein [Acetivibrio cellulolyticus CD2] gi|302591096|gb|EFL60840.1| integrase family protein [Acetivibrio cellulolyticus CD2] Length = 377 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 63/363 (17%), Positives = 122/363 (33%), Gaps = 42/363 (11%) Query: 14 ERTRHGKIIYYF---RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 + + GK + R G+ IR ++ ++ + + + T Sbjct: 12 YQRKDGKWMGSITIGRDKSGKLIRKAVYGKTK--KEVVTKMDCIKHDIKIGDYVEPDKIT 69 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT 129 + I+ + K+ L + S+ES II GD +K+ TK I+ R Sbjct: 70 VSEWINYWLKTYKKNKLKPKTYDSYESLSRITIIPHIGDLPMQKLKTKDIQEMYNKRYEE 129 Query: 130 PSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 S+ ++ A+ + Y++ NP VE P+ + I+ ++ ED + F+ Sbjct: 130 GYSSNSIHKVNIVLKSALNKAITEGYISKNPANFVELPEIIKKDIKAFSAEDQKAFEQAA 189 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246 + S +A+ L +GLR S+ ++ + + K + + KL+ Sbjct: 190 KDYSH-YIAYIVNLDTGLRMSELLALTWDNIDFDKAELTVNKNLVSVRDREKEDGFKLIV 248 Query: 247 MTPIGKETF-----------------------------FINNDKQKMNATQFSIWFKAKA 277 K + F + + +S F+ Sbjct: 249 QENTSKTKYSIRTIPLTKRCISLLRKLKIKQQANSNIVFCSKLGTHLTPRNYSRTFQRIV 308 Query: 278 TKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA-DRIRLGIK 334 KA V + H +R AT +AG + G +V +TYT + + I Sbjct: 309 KKAKVEMCNVHTMRHTFATRLFEAGVPPKTISELLGHASVSFTLDTYTHVMPNTKKQAID 368 Query: 335 NSR 337 Sbjct: 369 MLE 371 >gi|66044534|ref|YP_234375.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. syringae B728a] gi|63255241|gb|AAY36337.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas syringae pv. syringae B728a] Length = 298 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 53/291 (18%), Positives = 108/291 (37%), Gaps = 24/291 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT--TKHIRSGVESR---K 127 LI + + L+ N+R ++ S + + I+ + I + R Sbjct: 8 LIDRFLDALWLEKGLSDNTRDAYRSDLALFNGWLQERNVDLISAGREVILDHLAWRVDNA 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 + P S +FL+ R +++ +R++ +A++P L ++ P+ + ++ D++ + Sbjct: 68 YKPRSTARFLSGARGFYRYLLREKLIAVDPTLQIDMPQLGKPLPKSLSEADVEALLAAPD 127 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 G + R E L GLR ++ ++ + ++ V + + + Sbjct: 128 LSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEESI 187 Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290 + G F + +M F K +AT AG+ KS H +R Sbjct: 188 VWVERYLRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGIGKSLSPHTLR 247 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 AT + GA + G + + YT A R RL ++R Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQEMHARHHPR 297 >gi|260771236|ref|ZP_05880163.1| tyrosine recombinase XerD [Vibrio furnissii CIP 102972] gi|260613833|gb|EEX39025.1| tyrosine recombinase XerD [Vibrio furnissii CIP 102972] gi|315179158|gb|ADT86072.1| site-specific tyrosine recombinase XerD [Vibrio furnissii NCTC 11218] Length = 302 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 42/280 (15%), Positives = 102/280 (36%), Gaps = 24/280 (8%) Query: 74 LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESR---K 127 L+ ++ + L+ N+ +S+ + +++ ++ I+ ++ Sbjct: 11 LVEQFLDAMWMERGLSENTLMSYRNDLMKLLDWMQRHNYRLDFISLSGLQEYQTWLVDQD 70 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + +S + L+++R LF++ R++ A +P + PK + ++ + S + Sbjct: 71 YKQTSRARMLSAIRRLFQYLHREKMRADDPSALLISPKLPKRLPKDLSEAQVDALLSAPN 130 Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM 242 + + E L +GLR ++ ++++ ++ G V + + + Sbjct: 131 PDDPIELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVIGKGGKERLVPMGENAI 190 Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289 + + + F + Q+M F K A AG++ S H + Sbjct: 191 EWIETFLAQGRSHLLGEQTSDVVFPSKRAQQMTRQTFWHRIKHYAVIAGIDVDKLSPHVL 250 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + GA + G + + YT A Sbjct: 251 RHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER 290 >gi|218550141|ref|YP_002383932.1| site-specific tyrosine recombinase XerD [Escherichia fergusonii ATCC 35469] gi|218357682|emb|CAQ90323.1| site-specific tyrosine recombinase [Escherichia fergusonii ATCC 35469] Length = 298 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 42/279 (15%), Positives = 94/279 (33%), Gaps = 24/279 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRKH 128 I ++ + +LA N+ ++ ++ T + + + + Sbjct: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +S+ + L+++R LF++ R+++ +P + PK + ++ +++ Sbjct: 68 KATSSARLLSAVRRLFQYLYRKKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 Query: 189 G----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243 + + E L +GLR S+ + + ++ V L + + Sbjct: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187 Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290 L + F + Q+M F K A AG++ S H +R Sbjct: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + GA + G + + YT A Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286 >gi|149181661|ref|ZP_01860154.1| site-specific tyrosine recombinase XerD [Bacillus sp. SG-1] gi|148850639|gb|EDL64796.1| site-specific tyrosine recombinase XerD [Bacillus sp. SG-1] Length = 297 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 42/270 (15%), Positives = 99/270 (36%), Gaps = 25/270 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKHTPSSAI---QFL 137 LA NS S++ ++ + D + + +I + K+ SA + + Sbjct: 16 KGLAKNSVDSYQRDLKNYMKFIQNVDSAESWNDVQRVNITGFLGHLKNEGKSAKTVARHV 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193 S+R ++ +R++ +P + +E PK + + + ++++ E G + + Sbjct: 76 ASIRSFHQFLLREKVTDQDPSIHIESPKMERSLPKVLSIDEVEALLEAPQESSALGIRDK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT---- 248 E L +G+R S+ R + + + ++ + + + +L Sbjct: 136 AMLEVLYATGIRVSELIRLKMDDVHLKMGFVRCIGKGNKERIIPIGKAAITVLEKYLLEG 195 Query: 249 -------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 ++ F+N+ + ++ F K A +A + K + H +R AT + Sbjct: 196 RPKLVSKKHKDDSLFLNHHGKGLSRQGFWKILKGLAAEAKITKELTPHTLRHSFATHLLE 255 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRI 329 GA + G + + YT Sbjct: 256 NGADLRAVQEMLGHVDISTTQIYTHVTKTR 285 >gi|324017291|gb|EGB86510.1| tyrosine recombinase XerD [Escherichia coli MS 117-3] Length = 298 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 42/279 (15%), Positives = 94/279 (33%), Gaps = 24/279 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRKH 128 I ++ + +LA N+ ++ ++ T + + + + Sbjct: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +S+ + L+++R LF++ R+++ +P + PK + ++ +++ Sbjct: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 Query: 189 G----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243 + + E L +GLR S+ + + ++ V L + + Sbjct: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187 Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290 L + F + Q+M F K A AG++ S H +R Sbjct: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + GA + G + + YT A Sbjct: 248 HAFATHLLNHGADLRVVQILLGHSDLSTTQIYTHVATER 286 >gi|220922881|ref|YP_002498183.1| integrase family protein [Methylobacterium nodulans ORS 2060] gi|219947488|gb|ACL57880.1| integrase family protein [Methylobacterium nodulans ORS 2060] Length = 351 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 69/341 (20%), Positives = 130/341 (38%), Gaps = 21/341 (6%) Query: 10 FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 V + R RHGK Y R + P+ + A ++ L G K+E + Sbjct: 9 GVKRYRDRHGKWRNYHRATGKP---IKAPYGTAEFAAEVAELNGLVSKKEPPRN-----G 60 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK--HIRSGVESRK 127 TL+ ++ EY+ + + LA+ +R +E YF+ I + D + I + + + K Sbjct: 61 TLRGVMDEYKTTPAFADLAMATRAGYERYFE-IAKPLHDVPIQSIDSAGLSVIRDKVAMK 119 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQFKSFW 186 +A L+ + VLF +A+ ++YV NP V+R KR + ++ Sbjct: 120 RGWRTANYMLSVLSVLFGFAIERKYVTQNPAFVVKRAKRDKTKPKANRPWSLEERKAVLA 179 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246 S ++ +++G+R D+ ++ + KTG I + + ++LA Sbjct: 180 EAPSHLKVPLALAMFTGVRKRDALTLRKDAIRGGAIAT--SKTGEEIFIRIHPELAEILA 237 Query: 247 MTPIGKETFFINNDK-QKMNATQFSIWFKAKATKAG------VNKSAHGVRKFSATISAD 299 P + T F+ + K + HG+R AD Sbjct: 238 GAPPHAAPTIAATSRGTPWTETGFNSVWDKFKDKLEAEGRVRPGLTIHGLRHTLGGHLAD 297 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 AG + G KT+ A+ Y++ + + R+ Sbjct: 298 AGCDLDTIRRVLGQKTLTMAQLYSERVKKEAATKEAMERMD 338 >gi|289578559|ref|YP_003477186.1| integrase [Thermoanaerobacter italicus Ab9] gi|289528272|gb|ADD02624.1| integrase family protein [Thermoanaerobacter italicus Ab9] Length = 398 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 63/365 (17%), Positives = 121/365 (33%), Gaps = 49/365 (13%) Query: 26 RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85 RK + + I++ ES + L + E T K I ++ K Sbjct: 27 RKRYTKTIKVYGKSESAKLKEAEKELAKFVAEIEGNLFVEPSKLTFKAFIEKWLKEYAEN 86 Query: 86 SLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH------------TPSS 132 +LA + ++ +II G KI H+ + K +P + Sbjct: 87 NLAPKTLHRYKEMLEKRIIPALGHLKLDKIKPIHVLEFLNMLKEDGARLDGKEGGLSPQT 146 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-WSEGSQ 191 + +F+ AV+ + + NP ++E PK + + +E++++ +E + Sbjct: 147 IKHHYRLIHAIFEDAVKWQLIPSNPASNIEPPKVPKKEAGYYNEEEVRKLIKALENEKLK 206 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-----------------IIT 234 ++A L +GLR + +H+ IK ++ Sbjct: 207 YKVAVMVTLAAGLRIGELMGLKWEHIDFENNIIKIEQANQYLPGEGTFTKNPKTETSKRL 266 Query: 235 VELPDGFMKLLAM--------------TPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280 + +P M LL I F + Q M F+ WF K Sbjct: 267 IAMPKEIMDLLREYKKEQNIERLKKGSMWIDTGYVFTQWNGQPMYPYTFTKWFPKFLEKH 326 Query: 281 GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRR 338 G+ + + H +R SAT+ +AG + A G Y + + Sbjct: 327 GLRRITFHQLRHTSATLLINAGENVRTVSARLGHSNTSTTMNIYAHAL--KSADRNAADK 384 Query: 339 ISSVV 343 I++ + Sbjct: 385 IANYL 389 >gi|261250247|ref|ZP_05942823.1| site-specific recombinase XerD [Vibrio orientalis CIP 102891] gi|260939363|gb|EEX95349.1| site-specific recombinase XerD [Vibrio orientalis CIP 102891] Length = 302 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 40/280 (14%), Positives = 99/280 (35%), Gaps = 24/280 (8%) Query: 74 LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESR---K 127 ++ ++ + L+ N+ S+ + +++R ++ I+ ++ Sbjct: 11 IVEQFLDAMWMERGLSENTLASYRTDLVKLLRWMSTNNYKLDFISLSGLQEYQAWLVDEG 70 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + +S + L+++R LF++ R++ +P + PK + ++E + Sbjct: 71 YKQTSRARMLSAIRRLFQYLHREKVRGDDPSALLVSPKLPKRLPKDLSEEQVDALLDAPD 130 Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM 242 + + E L +GLR ++ ++++ ++ G V + + + Sbjct: 131 PNDAMELRDKAMLELLYATGLRVTELVSLTMENVSLRQGVVRVTGKGGKERLVPMGENAV 190 Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289 + + F + ++M F K A AG++ S H + Sbjct: 191 DWIETFLQQGRSELLGETTSDVVFPSKRARQMTRQTFWHRIKHYAVVAGIDTEQLSPHVL 250 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + GA + G + + YT A Sbjct: 251 RHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER 290 >gi|187779532|ref|ZP_02996005.1| hypothetical protein CLOSPO_03128 [Clostridium sporogenes ATCC 15579] gi|187773157|gb|EDU36959.1| hypothetical protein CLOSPO_03128 [Clostridium sporogenes ATCC 15579] Length = 291 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 39/278 (14%), Positives = 101/278 (36%), Gaps = 19/278 (6%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTPS 131 +I Y K +L+ N+ ++ ++ + T I + V+ + Sbjct: 4 IIEIYIKDLQKKNLSKNTLEAYRRDVEKFSEFVKGREEKILSVDTVTIMAFVQYLQREGR 63 Query: 132 SAIQFLT---SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187 + + S+R +K+ +++ V+ +P L E PK + + + E++ + + Sbjct: 64 ATSSIVRNIVSIRNFYKYLIKKNMVSEDPTLGYEIPKIERTIPKILSVEEVDKLLNSPDS 123 Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVELPDGFMKL 244 +G + + E + +G++ ++ + + IK + + + + +K Sbjct: 124 SKKGLRDKAMLELMYATGVKITELLNLNIYDINLKFNYIKCRGSKKRERIIPIGSYAVKC 183 Query: 245 LAMTPIGKETFFINNDKQ--------KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294 L + + N +M F K A +A ++K ++ +R A Sbjct: 184 LKNYLEVRPAINVYNLDYLFLNLKGTQMTRQGFWKIIKFYAKEASIDKEIDSYTLRHSFA 243 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 GA + G K + + Y+ + + ++ Sbjct: 244 VHLLQNGADIKSVQELLGHKDLAATQIYSSISKKSKIA 281 >gi|323495869|ref|ZP_08100937.1| site-specific tyrosine recombinase XerD [Vibrio sinaloensis DSM 21326] gi|323319085|gb|EGA72028.1| site-specific tyrosine recombinase XerD [Vibrio sinaloensis DSM 21326] Length = 302 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 39/280 (13%), Positives = 100/280 (35%), Gaps = 24/280 (8%) Query: 74 LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESR---K 127 ++ ++ + L+ N+ S+ + ++++ ++ I+ ++ Sbjct: 11 IVEQFLDAMWMERGLSENTLASYRNDLMKLLQWMSSHNYRLDFISLSGLQEYQTWLVDEG 70 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + +S + L+++R LF++ R++ A +P + PK + +++ + Sbjct: 71 YKQTSRARMLSAIRRLFQYLHREKRRADDPSALLVSPKLPKRLPKDLSEQQVDALLDAPD 130 Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM 242 + + E L +GLR ++ ++++ ++ G V + + + Sbjct: 131 PNDPMELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVTGKGGKERLVPMGENAV 190 Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289 + + F + ++M F K A AG++ S H + Sbjct: 191 DWIETFLQQGRSELLGENTSDVVFPSKRARQMTRQTFWHRIKHYAVIAGIDADKLSPHVL 250 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + GA + G + + YT A Sbjct: 251 RHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER 290 >gi|260913748|ref|ZP_05920224.1| tyrosine recombinase XerD [Pasteurella dagmatis ATCC 43325] gi|260632287|gb|EEX50462.1| tyrosine recombinase XerD [Pasteurella dagmatis ATCC 43325] Length = 301 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 42/285 (14%), Positives = 94/285 (32%), Gaps = 28/285 (9%) Query: 73 WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD---------FDYRKITTKHIRSG 122 LI + L+ N+ S+ +++ I + Sbjct: 5 ALIELFLNDVWIERKLSQNTVQSYRLDLTALLQWLEKQSEEQPLTLITLDAIDLQTFLGE 64 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 ++ + +S + L+++R LF++ R++Y +P + PK + + T++ + Sbjct: 65 RLTQGYKATSTARLLSAIRKLFQYLYREKYRTDDPSAVLSSPKLPSRLPKYLTEQQVTDL 124 Query: 183 KSFWSEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVEL 237 + + + E L +GLR ++ V+++ N ++ V + Sbjct: 125 LNAPDVDVPLELRDKAMMELLYATGLRVTELVSLTVENININQGIVRVIGKGNKERIVPI 184 Query: 238 PDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--- 284 + + + T F + +M F K A + ++ Sbjct: 185 GEEATYWIRQFVLYGRTTLLNGQSSDVLFPSKRAVQMTRQTFWHRIKHYALISEIDLNSL 244 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 S H +R AT + GA + G + + YT A Sbjct: 245 SPHVLRHAFATHLINHGADLRVVQMLLGHSDLSTTQIYTHVAKER 289 >gi|169634632|ref|YP_001708368.1| site-specific tyrosine recombinase [Acinetobacter baumannii SDF] gi|169153424|emb|CAP02561.1| site-specific tyrosine recombinase [Acinetobacter baumannii] Length = 306 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 45/275 (16%), Positives = 86/275 (31%), Gaps = 19/275 (6%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130 + +R +++ ++R ++ S Q T+ I + +P Sbjct: 20 FLQGFRDYLVAQTVSPHTRNAYLSDLIQCSEIHKKNRLPDWTSDDISDVLIELTKVGKSP 79 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-- 188 S + L+++R +K Q+ + NP + PK + ++ED++ Sbjct: 80 RSIARCLSALRQFYKSLREQKLRSDNPVATHHSPKIGRALPKDLSEEDVEALIQAPDITT 139 Query: 189 --GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLL 245 G + R FE L GLR S+ ++ + ++ V L + Sbjct: 140 ALGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGYLRITGKGNKERLVPLGQYACDWV 199 Query: 246 AMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 M+ F K A +A + S H +R A Sbjct: 200 ERYLNEARPQLYKSSTDYLFLTQHGGIMSRQNFWYAIKRYALQANIQAELSPHTLRHAFA 259 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 T + GA + G + + YT A Sbjct: 260 THLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR 294 >gi|149920280|ref|ZP_01908751.1| integrase/recombinase XerD [Plesiocystis pacifica SIR-1] gi|149818867|gb|EDM78307.1| integrase/recombinase XerD [Plesiocystis pacifica SIR-1] Length = 302 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 43/284 (15%), Positives = 102/284 (35%), Gaps = 25/284 (8%) Query: 66 KKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRS 121 + L+ L+ +Y + +L+ N+ ++ + +++ G +++ + Sbjct: 2 ARDEALEDLVEDYLQHLKVERNLSPNTLEAYGNDLRRLLDALSGAGVERASQVSPAALLG 61 Query: 122 GVESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + S SA + ++R LF+W ++ V ++P + PK + ++E+ Sbjct: 62 FLRSLAEAGLSARSQARRWVAVRGLFRWLRSEQLVEVDPTQGIALPKAVNKLPELLSREE 121 Query: 179 MQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234 + + + G + EF+ +G R S++C + L + + G+ Sbjct: 122 VVRLIAAPGVDTPLGLRDTALLEFMYATGCRVSEACDLELSSLHLDQGLVVLTGKGSKQR 181 Query: 235 VE------------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 + + L + F+N +++ + A AG+ Sbjct: 182 MVPLGDCALVALLAWLEEGRPELVARAPREAHVFVNKRGSRLSRQGCFFRLRQHAVSAGI 241 Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + S H +R AT + GA + G + + YT Sbjct: 242 TRDISPHKLRHSFATHLIEGGADLRAVQTLLGHADISTTQVYTH 285 >gi|52080868|ref|YP_079659.1| site-specific tyrosine recombinase XerD [Bacillus licheniformis ATCC 14580] gi|52786240|ref|YP_092069.1| site-specific tyrosine recombinase XerD [Bacillus licheniformis ATCC 14580] gi|319645175|ref|ZP_07999408.1| RipX protein [Bacillus sp. BT1B_CT2] gi|52004079|gb|AAU24021.1| site-specific integrase/recombinase [Bacillus licheniformis ATCC 14580] gi|52348742|gb|AAU41376.1| RipX [Bacillus licheniformis ATCC 14580] gi|317392984|gb|EFV73778.1| RipX protein [Bacillus sp. BT1B_CT2] Length = 296 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 44/269 (16%), Positives = 101/269 (37%), Gaps = 24/269 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVESRKH---TPSSAIQFL 137 L+ N+ +S+E + + + ++T HI ++ K + + + L Sbjct: 16 RGLSHNTVVSYERDLNSYAAYLEEQEQLSSFDQVTRLHIIQFLKHLKDAGKSGKTVARHL 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193 S+R ++ +R++ A +P + +E K + + + ++++ G + + Sbjct: 76 ASIRSFHQFLLREKVTAQDPSVHIESQKTERTLPKVLSLQEVETLLDTPKLTGPFGYRDK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT---- 248 E L +G+R S+ + + ++ I+ V L + + Sbjct: 136 AMLELLYATGIRVSEMIALKLSDVHLSMGFIRCFGKGRKERIVPLGEAASHAVGEYLSKA 195 Query: 249 ------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 ++ F+N+ ++M+ F K A +AG+NK + H +R AT + Sbjct: 196 RGKLLKKNTEDALFLNHHGRQMSRQGFWKNLKKIALEAGINKELTPHTLRHSFATHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329 GA + G + + YT Sbjct: 256 GADLRAVQEMLGHADISTTQIYTHVTKTR 284 >gi|258516839|ref|YP_003193061.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771] gi|257780544|gb|ACV64438.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771] Length = 381 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 46/376 (12%), Positives = 116/376 (30%), Gaps = 54/376 (14%) Query: 17 RHGKII--YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 + GK Y G+R + T A + L + E K TL+ Sbjct: 7 KRGKTYSIVYDINQGGKRKQKWESGFKTKKEA-EAILAQRINEIEKGTYINPKKDTLEDY 65 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR------- 126 + + + L+ ++ +E +I G+ K+ I+ + Sbjct: 66 LIRWFDTHKA-DLSPSTARRYEGIIKQHLIPSLGNIPLAKLQPLQIQEFLSKELEGGRQD 124 Query: 127 -------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + +S + AV + ++ NP V+ PK + + + +++D+ Sbjct: 125 NKKTVGAGLSAASVNYEYRVLHKALNQAVDWQLISRNPADLVKVPKPEKKDMVVLSEQDI 184 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII------ 233 + + + + +Y+G+R + + + + N + ++ + Sbjct: 185 ARLLNEIKDN-YLYIPTFLAIYTGMRLGEVLGSTWKDIDLNRGILSVRQASCQVKADDPE 243 Query: 234 -------------------------TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ 268 + + + D + +N Sbjct: 244 FKAPKTAKSKRNIDISQTVVKTLREHKKTQTKWKLVAGSNWQDNNLVCALQDGRPINPPS 303 Query: 269 FSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGAD 327 S +F+ A++ G+ S H +R A++ AG + G T+ Y+ Sbjct: 304 LSSYFRRVASRIGLFVSFHALRHTHASLLLKAGIQPKIVQERLGHSTIAVTMDIYSHVMP 363 Query: 328 RIRLGIKNSRRISSVV 343 + + + ++ ++ Sbjct: 364 G--MQRQAANKLDDML 377 >gi|262373947|ref|ZP_06067224.1| tyrosine recombinase XerD [Acinetobacter junii SH205] gi|262310958|gb|EEY92045.1| tyrosine recombinase XerD [Acinetobacter junii SH205] Length = 306 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 43/271 (15%), Positives = 90/271 (33%), Gaps = 19/271 (7%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV---ESRKHTPSSAI 134 +R +++ ++R ++ S Q + ++ I + +P S Sbjct: 24 FRDYLVAQTVSPHTRNAYLSDLIQCSDLHDTVVLTEWSSDDIADVLIVLTKHGKSPRSIA 83 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GS 190 + L+++R FK+ Q+ NP + + PK + ++ D++ + G Sbjct: 84 RCLSALRQFFKFLREQKLRDDNPVATHQSPKIGRALPKDLSEHDVEALINAPDISTALGL 143 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT- 248 + R E L GLR ++ ++ + ++ V L + + Sbjct: 144 RDRAMLEVLYACGLRVTELLNLRLELINLKQGFLRITGKGNKERLVPLGQYACEWVEKYL 203 Query: 249 --------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISA 298 + F+ M+ F K A +A + S H +R AT Sbjct: 204 SESRPQLYKSNTDYLFLTQHGGIMSRQNFWYAIKRYALQANISAELSPHTLRHAFATHLL 263 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRI 329 + GA + G + + YT A Sbjct: 264 NHGADLRVVQMLLGHSDLSTTQIYTHVAQHR 294 >gi|149377067|ref|ZP_01894817.1| integrase/recombinase XerD [Marinobacter algicola DG893] gi|149358603|gb|EDM47075.1| integrase/recombinase XerD [Marinobacter algicola DG893] Length = 310 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 46/268 (17%), Positives = 91/268 (33%), Gaps = 24/268 (8%) Query: 86 SLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESR---KHTPSSAIQFLT 138 L +R ++ S +++ G ++ + S + S+A + L+ Sbjct: 31 GLGEKTRQAYRSDLERLAAWLQEQPGKPLLTEVRRTDLLSWISRGLSDGFKTSTAARRLS 90 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWSEGSQPRL 194 +R F++ +R+ +A +P L ++ P+ +++D++ + + Sbjct: 91 GLRRFFRYLLREGVIAEDPTLRIDSPRLPRRLPDSLSEDDVENLLSEPDPEVPIELRDKA 150 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKE 253 E L GLR S+ V + ++ V L + + L Sbjct: 151 MMEILYGCGLRVSELVALTVDEVNLRQGVVRIVGKGNKERLVPLGEEAVDWLVRYMREGR 210 Query: 254 TF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301 F N M F K A +AG++K S H +R AT + G Sbjct: 211 GELLKGRASNALFPGNRPTAMTRQTFWHRIKHYALRAGIHKHLSPHTLRHAFATHLLNHG 270 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRI 329 A + G + + YT A + Sbjct: 271 ADLRVVQMLLGHSDLSTTQIYTHVARQR 298 >gi|229015245|ref|ZP_04172280.1| hypothetical protein bmyco0001_55910 [Bacillus mycoides DSM 2048] gi|228746047|gb|EEL96015.1| hypothetical protein bmyco0001_55910 [Bacillus mycoides DSM 2048] Length = 280 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 43/271 (15%), Positives = 95/271 (35%), Gaps = 12/271 (4%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG--VESRKH 128 L Y+ + + ++ ++ ++R GD + + TT+ ++ Sbjct: 3 LSEAWERYQLDKKIEGYSPLTLKTYCFQYNLLLRYFGDINMSEFTTEKLKGYLIEAGEHL 62 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 PSS + ++ LF+W + ++ NP ++ PK + + ++ +++ + Sbjct: 63 KPSSLGHRVRCIKSLFRWTHDEGFILKNPAAKLKEPKLGKKIPKFLSELEIEHLREACH- 121 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLAM 247 S FEFL +G R + + + + I K V L Sbjct: 122 NSMENALFEFLYSTGCRIGEVVKLNRVDINFSTNSVIVHGKGDKEREVYFNTRCTIWLKR 181 Query: 248 T------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISAD 299 K++M+ K + +A + KS H +R AT + Sbjct: 182 YLDERDDEEPCLFITERRPKRRMSIDNLRFIIKRISNRARIKKSIHPHQLRHSYATHMIN 241 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIR 330 GA + + G + + Y + + ++R Sbjct: 242 NGAPLEVIQSLLGHEKSETTRIYAQLSGKLR 272 >gi|325280456|ref|YP_004252998.1| Tyrosine recombinase xerC [Odoribacter splanchnicus DSM 20712] gi|324312265|gb|ADY32818.1| Tyrosine recombinase xerC [Odoribacter splanchnicus DSM 20712] Length = 307 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 51/285 (17%), Positives = 98/285 (34%), Gaps = 26/285 (9%) Query: 69 TTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSG- 122 T + I Y+ SL+ NS ++ + ++ + D I+ H++ Sbjct: 1 MTWEDAIESYKTYLILEKSLSSNSVEAYLNDIKKLAKYCADKHHVTTPDAISYDHLKDYL 60 Query: 123 --VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + T + + ++S+R +K+ V + NP +E PK + T E++ Sbjct: 61 MFINEVGVTNRTQARCISSIRSFYKFLVFDGQLENNPTKLLEAPKIGRKLPNILTTEEID 120 Query: 181 QFK----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI------------FSI 224 + E + + E L GLR S+ + ++ I Sbjct: 121 AMLNSVEMYKPEAQRNKAIIEMLYSCGLRVSELISIKLSNINFRQGIVKIEGKGNKERMI 180 Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284 K + + L + ++ F+N ++ K AT+AG+ K Sbjct: 181 PLSKNAKQEIKQYMKVYRDYLEIEKGYEDVLFLNKRGTALSRVMVFNIIKHLATRAGIKK 240 Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 S H R A+ GA + G +++ E YT D Sbjct: 241 NVSPHTFRHSFASHLVSGGADLRAVQDMLGHESILTTEIYTHLDD 285 >gi|291484781|dbj|BAI85856.1| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp. natto BEST195] Length = 296 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 40/269 (14%), Positives = 95/269 (35%), Gaps = 24/269 (8%) Query: 85 GSLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVESRKHTPS---SAIQFL 137 L+ N+ +S+E + D+ +T HI ++ K + ++ + L Sbjct: 16 RGLSQNTIVSYERDLKSYSLYLTETLHVTDWNHVTRIHIIQYLKHLKDSGKSGKTSARHL 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193 S+R ++ +R++ +P + +E K + + ++++ G + + Sbjct: 76 ASIRSFHQFLLREKVTDKDPSVHIETQKTERALPKVLALNEVERLLDTPKLTSPFGYRDK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252 E L +G+R S+ + ++ ++ V + + + Sbjct: 136 AMLELLYATGIRVSEMIELKTTDVHLSMGFVRCFGKGRKERIVPIGEAAASAIEEYMTKA 195 Query: 253 ETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 F+N+ ++++ F K A +AG+ K + H +R AT + Sbjct: 196 RGKLLKNNVSDALFLNHHGKQISRQGFWKNLKKIALEAGIKKELTPHTLRHSFATHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329 GA + G + + YT Sbjct: 256 GADLRAVQEMLGHADISTTQIYTHVTKTR 284 >gi|312127184|ref|YP_003992058.1| tyrosine recombinase xerd [Caldicellulosiruptor hydrothermalis 108] gi|311777203|gb|ADQ06689.1| tyrosine recombinase XerD [Caldicellulosiruptor hydrothermalis 108] Length = 291 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 39/278 (14%), Positives = 98/278 (35%), Gaps = 23/278 (8%) Query: 74 LISEYRKSAHWGSL-AVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRK 127 +I + + + N+ S+ + I + + T ++ Sbjct: 3 IIEAFGNHLQRQNRFSQNTISSYLRDAKKYIEFLDNIKIKLENTSQATLIAYIISMQKSG 62 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + S+ + + S++V + + + + + + +E PK + + T++++++ S Sbjct: 63 KSNSTIARAIVSLKVFYDFL-KIQNIVDIGKIEIEPPKLEKSPPQILTRDEVEKLLSCPK 121 Query: 188 E----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 E G + + E L +G+R S+ + + I + + + + Sbjct: 122 EDDIKGIRDKAMLELLYATGIRVSELINLNLDDINLEHGYIICKNKKRDRVIPIGSYAIS 181 Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291 + + F+N + ++M F K A AG++K + H +R Sbjct: 182 AVEKYLRHSRPYLAKNKDEEALFLNFNGERMTRQGFWKIVKFYAQSAGIDKEITPHVLRH 241 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + GA + G + + Y + A+ Sbjct: 242 SFATHLIENGADVRAVQQMLGHADISTTQRYLQVANVK 279 >gi|260223080|emb|CBA33286.1| Tyrosine recombinase xerD [Curvibacter putative symbiont of Hydra magnipapillata] Length = 297 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 48/287 (16%), Positives = 95/287 (33%), Gaps = 29/287 (10%) Query: 70 TLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK- 127 ++ I + + L+ N+ ++ ++ +R Sbjct: 6 SVDAFIDALWLEE----GLSKNTLQAYRRDLTLFAGHLAPKPLYGAQEHDLQGYFAARHA 61 Query: 128 -HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 ++A + LT ++ F+WA+R+ ++A +P L ++ K+ + T+ ++ + Sbjct: 62 ETKATTANRRLTVLKRFFRWALREGHIAQDPTLKLQAAKQALRVPKTLTEAQVEALLNAP 121 Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------- 229 G + + E L SGLR S+ + L N ++ Sbjct: 122 DTNEALGIRDKAMLELLYASGLRVSELVTLRMVQLGLNEGVLRVTGKGSKERLVPFGEVA 181 Query: 230 --GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285 + P + + T + M+ F K A +AG+ S Sbjct: 182 GLWLSRYLAGPRAELLAAKQSADVFVTVRGSKSGTAMSRIMFWGLVKRYALQAGIRVPLS 241 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R AT + GA + G + YT A R RL Sbjct: 242 PHTLRHAFATHLLNHGADLRSVQMLLGHADISTTTIYTHIA-RDRLA 287 >gi|326572192|gb|EGE22188.1| tyrosine recombinase XerD [Moraxella catarrhalis BC7] Length = 307 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 52/274 (18%), Positives = 95/274 (34%), Gaps = 21/274 (7%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---T 129 +SE+R + L++ +R ++ ++ + D +R+ + K + Sbjct: 20 EYLSEFRAAMLARGLSIATRNAYSQDV-RLCIRLSDMPVNLWQPSDVRNHLMCLKDAKKS 78 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE- 188 S + L S+ F W + Y NPC S++ PK + +++++ Sbjct: 79 ERSIARVLASLCQFFLWQIESGYREDNPCESIKTPKLGKTLPKTLSEQEVSSLLDAPDIS 138 Query: 189 ---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKL 244 G + + E L GLR S+ ++HL T K + + L + + Sbjct: 139 SVRGLRDKAMLEVLYACGLRVSELTSLSLEHLNLTAGWLSVTGKGNKMRLIPLGEYALSA 198 Query: 245 LAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKF 292 L + F+ M F K A AG+N S H +R Sbjct: 199 LNEYLAVRGSLLIGKKDCQAVFLTEQGGYMTRHNFWHLIKKYALMAGINTAISPHTLRHA 258 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA 326 AT + GA + G + + YT A Sbjct: 259 FATHLVNHGADLRSVQLLLGHSDLSTTQIYTHVA 292 >gi|221310269|ref|ZP_03592116.1| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp. subtilis str. 168] gi|221314592|ref|ZP_03596397.1| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319515|ref|ZP_03600809.1| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp. subtilis str. JH642] gi|221323791|ref|ZP_03605085.1| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp. subtilis str. SMY] gi|255767509|ref|NP_390232.2| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp. subtilis str. 168] gi|321311827|ref|YP_004204114.1| site-specific tyrosine recombinase XerD [Bacillus subtilis BSn5] gi|251757430|sp|P46352|XERD_BACSU RecName: Full=Tyrosine recombinase xerD gi|225185137|emb|CAB14283.2| site-specific tyrosine recombinase for chromosome partitioning [Bacillus subtilis subsp. subtilis str. 168] gi|320018101|gb|ADV93087.1| site-specific tyrosine recombinase XerD [Bacillus subtilis BSn5] Length = 296 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 41/269 (15%), Positives = 95/269 (35%), Gaps = 24/269 (8%) Query: 85 GSLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVESRKHTPS---SAIQFL 137 L+ N+ +S+E + D+ +T HI ++ K + ++ + L Sbjct: 16 RGLSQNTIVSYERDLKSYSLYLTETLHVTDWNHVTRIHIIQYLKHLKDSGKSGKTSARHL 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193 S+R ++ +R++ +P + +E K + + ++++ G + + Sbjct: 76 ASIRSFHQFLLREKVTDKDPSVHIETQKTERALPKVLALNEVERLLDTPKLTSPFGYRDK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252 E L +G+R S+ + ++ I+ V + + + Sbjct: 136 AMLELLYATGIRVSEMIELKTADVHLSMGFIRCFGKGRKERIVPIGEAAASAIEEYMTKA 195 Query: 253 ETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 F+N+ ++++ F K A +AG+ K + H +R AT + Sbjct: 196 RGKLLKNNVSDALFLNHHGKQISRQGFWKNLKKIALEAGIKKELTPHTLRHSFATHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329 GA + G + + YT Sbjct: 256 GADLRAVQEMLGHADISTTQIYTHVTKTR 284 >gi|304410563|ref|ZP_07392181.1| tyrosine recombinase XerD [Shewanella baltica OS183] gi|307304656|ref|ZP_07584406.1| tyrosine recombinase XerD [Shewanella baltica BA175] gi|304351047|gb|EFM15447.1| tyrosine recombinase XerD [Shewanella baltica OS183] gi|306912058|gb|EFN42482.1| tyrosine recombinase XerD [Shewanella baltica BA175] Length = 300 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 44/283 (15%), Positives = 90/283 (31%), Gaps = 28/283 (9%) Query: 74 LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRK 127 LI + L+ N+ ++ + R + + + + Sbjct: 10 LIDVFLDDLWSSKGLSDNTLSAYRTDLRHFDRYQAQQGVTLLAVSQADVRAYLAFRVEQD 69 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +S+ + L+S+R + + V+ + ++ +P VE PK ++ + + S + Sbjct: 70 FARTSSARLLSSLRRFYTYLVQTKQISADPMALVESPKLTRHLPDSLSESQVDRLLSEPN 129 Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-------------G 230 + + E L +GLR S+ ++ + ++ Sbjct: 130 VEDAVECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVRIVGKGGKERLVPLGELAI 189 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHG 288 T + + +LL F K A +AG+ S H Sbjct: 190 TEVESYMKFARQELLGNKQSDVVFPSKRGQMM--TRQTFWHRIKLYALRAGIETALSPHT 247 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +R AT + GA + G + + YT A R RL Sbjct: 248 LRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVA-RARL 289 >gi|33595884|ref|NP_883527.1| site-specific tyrosine recombinase XerD [Bordetella parapertussis 12822] gi|33565963|emb|CAE36514.1| integrase/recombinase [Bordetella parapertussis] Length = 310 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 48/307 (15%), Positives = 95/307 (30%), Gaps = 35/307 (11%) Query: 62 NSPRKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGD----------FD 110 ++P L I + + LA N+ ++ + + Sbjct: 4 SAPLASQADLDAFIDAVWLED----GLAANTLAAYRRDLSAFAQWLENPACHPGLATGHS 59 Query: 111 YRKITTKHIRSGVESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168 R+ I + +R ++A + L ++R + WA+R+ +PCL++ K+ Sbjct: 60 LREAGKGDIEAWFAARHAESRATTANRRLAALRRFYAWALRERLTPSDPCLTLVTAKQPP 119 Query: 169 EGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 + ++ + + + R E L +GLR S+ + N + Sbjct: 120 RLPKTLSEAQVDALLQAPDLDTARGLRDRAMLETLYATGLRVSELVSVKALDVSLNEGVV 179 Query: 225 K--TQKTGTIITVELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIW 272 + K G V L + F+ + M+ F Sbjct: 180 RVVMGKGGKDRLVPLGAEAAHWIERYAGSARPELLGARVADALFVTARAEPMSRQAFWQL 239 Query: 273 FKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 K A A + S H +R AT + GA + G + + YT A Sbjct: 240 VKKYALAADIRAPLSPHVLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVACERL 299 Query: 331 LGIKNSR 337 + + Sbjct: 300 KALHAAH 306 >gi|167622800|ref|YP_001673094.1| tyrosine recombinase XerD [Shewanella halifaxensis HAW-EB4] gi|167352822|gb|ABZ75435.1| tyrosine recombinase XerD [Shewanella halifaxensis HAW-EB4] Length = 300 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 48/291 (16%), Positives = 99/291 (34%), Gaps = 28/291 (9%) Query: 67 KPTTLKWLISEYRKSA-HWGSLAVNSRISFE---SYFDQIIRKSGDFDY--RKITTKHIR 120 T LI + L+ N+ ++ + D+ ++K G ++ + Sbjct: 3 DKYTPDSLIDLFLDDLWSTKGLSDNTLSAYRTDLRHLDRYLQKLGGELVTCSQLEVRDYL 62 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + + +S+ + ++S+R + + + ++ + +P +E PK + ++ED+ Sbjct: 63 AERFDKGSAKTSSARMMSSLRRFYGYLIVKKQIDTDPMALIESPKLSRKLPDSLSEEDID 122 Query: 181 QFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------- 229 + + E + + E L +GLR S+ ++ L ++ Sbjct: 123 RLLAEPIEDDPIECRDKAMLELLYATGLRVSELVGLTMEQLSLRQGLVRITGKGGKERLV 182 Query: 230 ------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV- 282 T I L +LL + F K A +AG+ Sbjct: 183 PLGELAITEIESYLKFARTELLKGKQSDVLFPSKRGQQM--TRQTFWHRIKLYALRAGIS 240 Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 S H +R AT + GA + G + + YT A RL Sbjct: 241 TELSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAT-ARLA 290 >gi|157148431|ref|YP_001455750.1| site-specific tyrosine recombinase XerD [Citrobacter koseri ATCC BAA-895] gi|157085636|gb|ABV15314.1| hypothetical protein CKO_04256 [Citrobacter koseri ATCC BAA-895] Length = 298 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 40/279 (14%), Positives = 91/279 (32%), Gaps = 24/279 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESRKH 128 I ++ + +LA N+ ++ ++ + + + + + Sbjct: 8 IEQFLDALWLERNLAENTLSAYRRDLSMVVEWLHHRGKTLATVQSDDLQTLLAERMDGGY 67 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +S+ + L++ R F+ R+++ +P + PK + ++ +++ Sbjct: 68 KATSSARLLSATRRFFQHLYREKFREDDPSAQLASPKLPQRLPKDLSEAQVERLLQSPVV 127 Query: 189 G----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243 + + E L +GLR S+ + + ++ V L + + Sbjct: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187 Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290 L + F + Q+M F K A AG++ S H +R Sbjct: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + GA + G + + YT A Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286 >gi|153939513|ref|YP_001391125.1| tyrosine recombinase XerD [Clostridium botulinum F str. Langeland] gi|170757059|ref|YP_001781413.1| tyrosine recombinase XerD [Clostridium botulinum B1 str. Okra] gi|152935409|gb|ABS40907.1| tyrosine recombinase XerD [Clostridium botulinum F str. Langeland] gi|169122271|gb|ACA46107.1| tyrosine recombinase XerD [Clostridium botulinum B1 str. Okra] gi|295319169|gb|ADF99546.1| tyrosine recombinase XerD [Clostridium botulinum F str. 230613] Length = 291 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 39/278 (14%), Positives = 103/278 (37%), Gaps = 19/278 (6%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTPS 131 +I Y K +L+ N+ ++ ++ + + T I + V+ + Sbjct: 4 IIENYIKDLQKKNLSKNTLEAYRRDVEKFSEFVRNREEKILSVDTVTIMAFVQYLQREGR 63 Query: 132 SAIQFLT---SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187 + + S+R +K+ +++ V+ +P L E PK + + + E++ + + + Sbjct: 64 ATSSIVRNIVSIRNFYKYLIKKNMVSEDPTLGYEIPKIERTIPKILSVEEVDKLLNSPNS 123 Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVELPDGFMKL 244 +G + + E + +G++ ++ + + IK + + + + +K Sbjct: 124 SKKGLRDKAMLELMYATGVKITELLNLNIYDINLKFNYIKCRGSKKRERIIPIGSYAIKC 183 Query: 245 LAMTPIGKETFFINNDKQ--------KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294 L + + N +M F K A +A ++K ++ +R A Sbjct: 184 LKNYLEVRPAINVYNLDYLFLNLKGTQMTRQGFWKIIKFYAKEASIDKEIDSYTLRHSFA 243 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 GA + G K + + Y+ + + ++ Sbjct: 244 VHLLQNGADIKSVQELLGHKDLAATQIYSSISKKSKIA 281 >gi|312972864|ref|ZP_07787037.1| tyrosine recombinase XerD [Escherichia coli 1827-70] gi|310332806|gb|EFQ00020.1| tyrosine recombinase XerD [Escherichia coli 1827-70] Length = 283 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 41/268 (15%), Positives = 90/268 (33%), Gaps = 23/268 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRKHTPSSAIQFLTS 139 +LA N+ ++ ++ T + + + + +S+ + L++ Sbjct: 4 KNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKATSSARLLSA 63 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG----SQPRLA 195 +R LF++ R+++ +P + PK + ++ +++ + + Sbjct: 64 VRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAM 123 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKET 254 E L +GLR S+ + + ++ V L + + L Sbjct: 124 LEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRP 183 Query: 255 F----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301 + F + Q+M F K A AG++ S H +R AT + G Sbjct: 184 WLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHG 243 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRI 329 A + G + + YT A Sbjct: 244 ADLRVVQMLLGHSDLSTTQIYTHVATER 271 >gi|170760942|ref|YP_001787191.1| tyrosine recombinase XerD [Clostridium botulinum A3 str. Loch Maree] gi|169407931|gb|ACA56342.1| tyrosine recombinase XerD [Clostridium botulinum A3 str. Loch Maree] Length = 291 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 38/278 (13%), Positives = 102/278 (36%), Gaps = 19/278 (6%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESRKH 128 +I Y K +L+ N+ ++ ++ + +T ++ Sbjct: 4 IIENYIKDLQKKNLSKNTLEAYRRDVEKFSEFVRNREEKMLSVDTVTIMAFVQYLQREGR 63 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187 SS ++ + S+R +K+ +++ ++ +P L E PK + + + E++ + + Sbjct: 64 ATSSIVRNIVSIRNFYKYLIKKNMISEDPTLGYEIPKIERTIPKILSVEEVDKLLNSPDS 123 Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVELPDGFMKL 244 +G + + E + +G++ ++ + + IK + + + + +K Sbjct: 124 SKKGLRDKAMLELMYATGVKITELLNLNIYDINLKFNYIKCRGSKKRERIIPIGSYAIKC 183 Query: 245 LAMTPIGKETFFINNDKQ--------KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294 L + + N +M F K A +A ++K ++ +R A Sbjct: 184 LKNYLEVRPAINVYNLDYLFLNLKGTQMTRQGFWKIIKFYAKEASIDKEIDSYTLRHSFA 243 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 GA + G K + + Y+ + + ++ Sbjct: 244 VHLLQNGADIKSVQELLGHKDLAATQIYSSISKKSKIA 281 >gi|86133541|ref|ZP_01052123.1| phage integrase family protein [Polaribacter sp. MED152] gi|85820404|gb|EAQ41551.1| phage integrase family protein [Polaribacter sp. MED152] Length = 298 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 48/279 (17%), Positives = 92/279 (32%), Gaps = 25/279 (8%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR----KITTKHIRS--GV 123 K I++Y+ L+ N+ S+ +++ + D KI + ++ Sbjct: 3 WKNAINDYQLFLKIERGLSQNTIDSYTRDLNKLTQFLNVNDIEISPIKIDKEIVQQFIYD 62 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 ++ P S + ++ +R F + V +++ NP +E PK + +++++ Sbjct: 63 VAKGVNPRSQARIISGLRSFFDYLVFEDFRETNPTDLIEAPKIGRKLPDTLSEDEINSLI 122 Query: 184 SF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELP 238 +G + R E L GLR S+ + L + F T K V + Sbjct: 123 QSIDLSHPQGERNRTILETLYSCGLRVSELITLKISDLYFDEGFIKVTGKGNKERFVPIH 182 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMN-----------ATQFSIWFKAKATKAGVNK--S 285 K + + K A K +NK S Sbjct: 183 YNAQKYITTYIHQIRNQVKPVKSFEDTLFLNRRGKGLTRQMIFTILKDLAIKIDLNKKIS 242 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT GA + G +++ E Y Sbjct: 243 PHTLRHSFATHLLKNGADLRAIQQMLGHESITTTEVYVH 281 >gi|56416387|ref|YP_153461.1| integrase/recombinase [Anaplasma marginale str. St. Maries] gi|56387619|gb|AAV86206.1| integrase/recombinase [Anaplasma marginale str. St. Maries] Length = 312 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 44/298 (14%), Positives = 106/298 (35%), Gaps = 35/298 (11%) Query: 72 KWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVES 125 + + + +S ++ N+ S+ S + + G + R + + + S Sbjct: 4 ERYLDAFLESLLSGRCVSPNTSSSYRSDLEDLAEFLGRRNLRMVDASAADLRAYVRSLNS 63 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 R ++P++ + ++++R L+ + + +P +++ K + T +++ + Sbjct: 64 RGYSPATVARRISAIRGLYGFLYGDRIIDGDPAANLDSCKLGRPLPKVLTVDEVDKLLCA 123 Query: 186 -----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------- 230 EG + L SG+R S+ G +++ + ++ Sbjct: 124 AGSDLSVEGRRTAAIVNILYSSGVRISELINLGFYDIESMLKEQRSDVGHLVIKGKAGRE 183 Query: 231 ----------TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280 I L ++ + F Q ++ + KA A A Sbjct: 184 RLILLNEVAIASIVAYLAVRDHFIVGQKSESRWLFPGAKFDQCISRQRVGQLLKALAIVA 243 Query: 281 GVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIK 334 GV+ S H +R AT + G+ + G ++ + YT A DR++ ++ Sbjct: 244 GVDPKRISPHKLRHSFATHLLNNGSNVVFIQKMLGHASLSTTQIYTYVANDRLKEALQ 301 >gi|237729834|ref|ZP_04560315.1| site-specific tyrosine recombinase XerD [Citrobacter sp. 30_2] gi|226908440|gb|EEH94358.1| site-specific tyrosine recombinase XerD [Citrobacter sp. 30_2] Length = 298 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 43/279 (15%), Positives = 92/279 (32%), Gaps = 24/279 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRKH 128 I ++ + +LA N+ ++ ++ T + + + + Sbjct: 8 IEQFLDALWLERNLAENTLSAYRRDLTMLVEWLHHRGASLATAQSDDLQALLAERMDGGY 67 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--- 185 +S+ + L++ R F+ R++Y +P S+ PK + ++ +++ Sbjct: 68 KATSSARLLSATRRFFQHLYREKYREDDPSASLASPKLPQRLPKDLSEAQVERLLQAPLI 127 Query: 186 -WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243 + + E L +GLR S+ + + ++ V L + + Sbjct: 128 EQPLELRDKAMLEVLYATGLRVSELVGLTMSDVSLRQGVVRVIGKGNKERLVPLGEEAVY 187 Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290 L + F + Q+M F K A AG++ S H +R Sbjct: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + GA + G + + YT A Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286 >gi|168213629|ref|ZP_02639254.1| phage integrase [Clostridium perfringens CPE str. F4969] gi|170714780|gb|EDT26962.1| phage integrase [Clostridium perfringens CPE str. F4969] Length = 400 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 52/379 (13%), Positives = 96/379 (25%), Gaps = 55/379 (14%) Query: 14 ERTRHGKIIYYFRKG---HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 + +GK G +G R + ++ + P T Sbjct: 20 YKMSNGKFRGQLTIGYNENGSPKRKSFTGKTK--KEVSDKMKAFYVDNNRGLLPTDDKIT 77 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK--SGDFDYRKITTKHIRSGVESR-- 126 L + + L +S +E + I G + T HI++ S Sbjct: 78 LSQWFYTWLFTYRIHDLKPSSFERYEGLYRNYIEFSSLGKIKLIDLRTHHIQAYYNSLVA 137 Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED--MQQF 182 +PS+ ++ A+++ Y+ N C + PK QQ Sbjct: 138 EKGKSPSTIKTINKCLKSCLNQALKEGYITKNYCTLITLPKGPETSKETINIFTLEEQQT 197 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------- 232 ++ + + L +GLR + + I K Sbjct: 198 FMRECMNNKNGMLYILALGTGLRLGEILALKWTDINFKNNYIDINKAIKSTYKIDSKGNR 257 Query: 233 ---------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT---------- 267 TV L + ++LL + +N + + Sbjct: 258 EFQIIEQQPKTKNSIRTVPLNNNLIELLQQHRKKQMIDRDSNIEIYFDNNLVFSTPIGNY 317 Query: 268 ----QFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ET 321 FK K + H +R AT + G + G + Sbjct: 318 LNESNVRKTFKRILKKCNLKELRFHDLRHTFATRLFENGVPPKTVQTILGHSDISTTLNI 377 Query: 322 YTKGA-DRIRLGIKNSRRI 339 YT D I + Sbjct: 378 YTHVMKDTKDKAIDKLNFL 396 >gi|167763873|ref|ZP_02436000.1| hypothetical protein BACSTE_02254 [Bacteroides stercoris ATCC 43183] gi|167697989|gb|EDS14568.1| hypothetical protein BACSTE_02254 [Bacteroides stercoris ATCC 43183] Length = 316 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 55/293 (18%), Positives = 99/293 (33%), Gaps = 25/293 (8%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKH---TP 130 +Y K L+ N+ ++ + +++ + + +T ++ P Sbjct: 21 QQYLKLEKA--LSPNTLDAYMTDLQKLLHFLEGENIEIPDVTPDDLQRFAAGLHDIGIHP 78 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFW 186 S + L+ ++ F + V +Y +P +E PK T E++ + Sbjct: 79 RSQARILSGIKSFFHFLVIADYQEADPSELLEGPKIGFRLPEVLTVEEIDRIISTVDMEK 138 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFMKLL 245 EG + R E L GLR S+ C + L F K G V + +K + Sbjct: 139 KEGQRNRAILETLYSCGLRVSELCNLKISDLYFEEGFIKVEGKGGKQRLVPISPRAIKEI 198 Query: 246 AMTPI----------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293 ++ F+ ++ K A KAG+ K S H R Sbjct: 199 KYWFADRNLGKIKKGYEDYVFLARWGNNISRIMVFHMIKELAEKAGITKNISPHTFRHSF 258 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346 AT + GA + G +++ E YT DR RL + + Sbjct: 259 ATHLLEGGANLRAIQCMLGHESIATTEIYTH-IDRNRLRSEIIEHHPRNIKYR 310 >gi|56963547|ref|YP_175278.1| site-specific tyrosine recombinase [Bacillus clausii KSM-K16] gi|56909790|dbj|BAD64317.1| site-specific tyrosine recombinase [Bacillus clausii KSM-K16] Length = 297 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 45/268 (16%), Positives = 99/268 (36%), Gaps = 23/268 (8%) Query: 85 GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLT 138 L+ N+ S+ Q ++K G + K+ ++ + + K T ++ + +T Sbjct: 18 KGLSPNTIESYARDLKQYGAYLKKRGIDQFAKVDRSTLQHYLFTLKETGKSSATIARNVT 77 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194 ++R L ++ R+++ +P L +E P+ + + E++ + + + + Sbjct: 78 TLRALHQFLYREKWTDHDPTLWIETPRIDKKLPGVLSIEEVDALLAAPDSSTPFGVRNKA 137 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT----- 248 E L SG+R ++ G+ + ++ ++ V L K L Sbjct: 138 MLELLYASGMRVTELISLGLDDVHLSMGFVRVIGKGNKERIVPLGKEATKALNTYLERGR 197 Query: 249 -----PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301 + F+N+ + ++ F K A A + K S H +R AT + G Sbjct: 198 GALLKHERHDKLFVNHHGRPISRQGFWKIMKQLAKTANIEKDFSPHTLRHSFATHLLENG 257 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRI 329 A + G + + YT Sbjct: 258 ADLRSVQEMLGHADLSTTQIYTHVTKTR 285 >gi|319937629|ref|ZP_08012033.1| tyrosine recombinase xerC [Coprobacillus sp. 29_1] gi|319807271|gb|EFW03883.1| tyrosine recombinase xerC [Coprobacillus sp. 29_1] Length = 301 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 41/284 (14%), Positives = 86/284 (30%), Gaps = 26/284 (9%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSGVESR 126 + EY + + + + ++ + I D++ + +R + Sbjct: 4 FDKYVQEYLDVLKYQKNYSSLTIDGYKREIEHFIVYLNKENICDFKDVRYPFLRGYLAQL 63 Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 +P + ++S+R L+++ Q Y+ NP L ++ K+ ++M Sbjct: 64 HSENLSPKTINHKMSSLRGLYRYLQTQGYIDDNPFLLIDSLKQPLRNPDFLYIDEMMDLL 123 Query: 184 SFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238 G + + E + SGLRCS+ + + + K V Sbjct: 124 DSIDTQTLLGRRNKALLELMYASGLRCSEVVELTLSQIDFERQLLLIHGKGNKDRYVPFH 183 Query: 239 DGFMKLLAMT------------PIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNK 284 D L + + F+N + KM + A Sbjct: 184 DYAADWLKTYIEEDRPELMAVKHLEHQFVFVNKNGAKMTNRGIEDIVNRVTQRYDATKKV 243 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 H R AT + G + G + + YT ++ Sbjct: 244 HPHTFRHSFATHLLEQGVDIRVVQELLGHSNLSTTQIYTHVTNQ 287 >gi|157692850|ref|YP_001487312.1| site-specific tyrosine recombinase XerD [Bacillus pumilus SAFR-032] gi|157681608|gb|ABV62752.1| tyrosine recombinase [Bacillus pumilus SAFR-032] Length = 296 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 42/269 (15%), Positives = 101/269 (37%), Gaps = 24/269 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVESRKHTPSSAI---QFL 137 L+ N+ +S++ + D + +T HI ++ K S+ + L Sbjct: 16 RGLSENTIVSYKRDLQNYLSFLMTHEQLSDIKDVTRLHIIHYLKQLKEEGKSSKTSVRHL 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPR 193 +S+R ++ +R++ +P ++E K + + + + ++++ ++ + + + Sbjct: 76 SSIRSFHQFLLREKVTKDDPSWNIETQKTERKLPKVLSLGEVEKLLDTPNQHTPFDYRDK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT---- 248 E L +G+R S+ + + + I+ V + + + Sbjct: 136 AMLELLYATGIRVSEMLDLTLADVHLTMGFIRCFGKGRKERIVPIGEAAASAIEEYLEKG 195 Query: 249 ------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 + F+N+ +KM+ F K +A +AG+ K + H +R AT + Sbjct: 196 RGKLLKKQPADALFLNHHGKKMSRQGFWKNLKKRALEAGIQKELTPHTLRHSFATHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329 GA + G + + YT Sbjct: 256 GADLRAVQEMLGHADISTTQIYTHVTKTR 284 >gi|260588143|ref|ZP_05854056.1| integrase/recombinase XerD [Blautia hansenii DSM 20583] gi|260541670|gb|EEX22239.1| integrase/recombinase XerD [Blautia hansenii DSM 20583] Length = 294 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 42/271 (15%), Positives = 97/271 (35%), Gaps = 23/271 (8%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHI---RSGVESRK 127 I E+ + H + N+ +S+E ++ + G ++ +++ + +E + Sbjct: 5 IQEFIEHLHNTRGTSRNTEVSYERDLKKLEQFLKQEGILEWHQVSAVLLNSYIMYLERKN 64 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 SS + + S+R F++ ++E NP ++ PK + + T +++ S Sbjct: 65 FAASSISRSVASIRAFFQYLCQRECWRENPAEGLKAPKIEKKAPGILTVDEVDLLLSQPK 124 Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 E + + R E L +G+R S+ ++ + + + ++ + Sbjct: 125 ENTAKGVRDRAMLELLYATGIRVSELIHLTLRDVNLKLGYLTCSQSERERVIPFGATAKT 184 Query: 244 LLAMTPIGKE----------TFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRK 291 + F+N + M+ F K A AG+ + + H +R Sbjct: 185 AVEAYMAWARVELLGENSSEWLFVNCSGKSMSRQGFWKILKGYAVSAGIQQDITPHTLRH 244 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETY 322 A GA + G + + Y Sbjct: 245 SFAAHLVQNGADLKSVQEMMGHSDISTTQIY 275 >gi|330432635|gb|AEC17694.1| site-specific tyrosine recombinase XerD [Gallibacterium anatis UMN179] Length = 297 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 44/280 (15%), Positives = 96/280 (34%), Gaps = 24/280 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESR---K 127 LI+ + +L+ N+ S+ S + +++ +++ + R Sbjct: 6 LINLFLDELWLGKNLSQNTIASYRSDLKFLSEWLEKHHLTLQQVQYLDLQAFLGERLQQG 65 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185 + +S + L++MR LF++ +++Y NPC + PK + T+ + + Sbjct: 66 YKATSYSRMLSAMRKLFQYLYQEKYREDNPCSLLTSPKLPARLPKYLTESQVTDLLNTPA 125 Query: 186 --WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 + + + E L +GLR S+ ++ ++ V + + Sbjct: 126 TENALELRDKAMLELLYATGLRVSELVSLTTNNINLQQGVVRVIGKADKERLVPIGEEAN 185 Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289 + + F + + M F K A+ A ++ S H + Sbjct: 186 YWVQQFILYGRAELLGGQSSDVLFPSRQGKLMTRQTFWYRIKHYASLANIDADKLSPHVL 245 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + GA + G + + YT A Sbjct: 246 RHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKER 285 >gi|169827277|ref|YP_001697435.1| tyrosine recombinase xerD [Lysinibacillus sphaericus C3-41] gi|168991765|gb|ACA39305.1| Tyrosine recombinase xerD [Lysinibacillus sphaericus C3-41] Length = 300 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 45/285 (15%), Positives = 100/285 (35%), Gaps = 26/285 (9%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVES 125 ++ + +Y L+VN+ S+ + + G ++ I I +E Sbjct: 4 FQYAVEDYIHFIQVERQLSVNTLASYRRDLESYVNFLQNAEGMANFNHIERTTILRHLEQ 63 Query: 126 RKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + + + ++S+R ++ +R++ +P + +E P + + + E+++ Sbjct: 64 LRVQGKTSRTIARHISSIRSFHQFLLREKRAESDPTVHLEMPTIEQKLPNILSIEEIEAL 123 Query: 183 KSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVEL 237 + + G + E L SG+R S+ + L + ++ G + L Sbjct: 124 LTAPNRSKPQGIRDLAMLELLYGSGMRISELIALDLADLHLTMGFVRVFGKGGKERIIPL 183 Query: 238 PDGFMKL-----------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284 + L + FFIN +++ K A KAG+ Sbjct: 184 GKSALSAISTYLNNARGQLQGKYPKTDAFFINQRGKRLTRQGCWKLMKEHALKAGIQHEL 243 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + H +R AT + GA + G + + YT + Sbjct: 244 TPHTLRHSFATHLVENGADLRAVQEMLGHADISTTQIYTHISKTR 288 >gi|302346034|ref|YP_003814387.1| phage integrase, N-terminal SAM domain protein [Prevotella melaninogenica ATCC 25845] gi|302149123|gb|ADK95385.1| phage integrase, N-terminal SAM domain protein [Prevotella melaninogenica ATCC 25845] Length = 314 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 54/276 (19%), Positives = 100/276 (36%), Gaps = 23/276 (8%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVES 125 K ++S YR+ +VN+ ++ D++ R + K H + + Sbjct: 8 KDIVSRYRRYLKLEKGYSVNTLDAYMRDVDKLFRYLAVEQVDVLDVKLEDLEHFAAFISD 67 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 P S + L+ +R +++ V Y+ ++P +E PK+ + ++ + Sbjct: 68 LGIGPRSLARILSGVRQFYRFLVIDGYLEVDPTELLESPKQPDHLPEVLSTAEVDLLEQA 127 Query: 186 W----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDG 240 EG + R E L GLR S+ + +L I+ V + Sbjct: 128 IDLSKWEGHRNRAIIEVLFSCGLRVSELTNLKLSNLYIEEQYIRVMGKGSKERLVPISPR 187 Query: 241 FMKLLAMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKAGVNKS--AHG 288 + L+ + I N Q + T I K A +AG+ K+ H Sbjct: 188 ALDELSYWFADRNVMKIKPGEEDYVFLNRRGQHLTRTMILIMIKRYAVEAGIKKTISPHT 247 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT + GA + A G +++ E YT Sbjct: 248 LRHSFATSLLEGGADLRAIQAMLGHESIGTTEIYTH 283 >gi|188997103|ref|YP_001931354.1| integrase family protein [Sulfurihydrogenibium sp. YO3AOP1] gi|188932170|gb|ACD66800.1| integrase family protein [Sulfurihydrogenibium sp. YO3AOP1] Length = 297 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 46/299 (15%), Positives = 100/299 (33%), Gaps = 30/299 (10%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-- 128 + + + + N+ ++ F+Q I+ GD + +IT I + + Sbjct: 3 VSECCNLFLSYMA--DKSPNTVKNYRVDFNQFIKIVGDKNINEITKADIAKFRMTLQMQN 60 Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S+ + L S+ LF++ + E V+ +P RPK + + E++++ Sbjct: 61 RKSSTIARKLASINSLFQYLMDLELVSSSPITKSHRPKVSQKIPSALSNEEVKKLIDAL- 119 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----------------- 230 + Q + L +GLR S+ ++ Sbjct: 120 DSIQDKAIVVLFLTTGLRSSELLSIKKSNIIVERNGQTFSIDRLIEGEVKEGDIAYIRVV 179 Query: 231 ----TIITVELPDGFMKLLAMTPIGKETF-FINNDKQKMNATQFSIWFKAKATKAGVNKS 285 V + +++L F N ++ K K + Sbjct: 180 GKGDKEREVPITGKPLEILVQYLKSINEFLDDNEYIFPISYHLLWRKIKNIGKKLAITLH 239 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 H +R +AT++ +GA + G + Y K + +L +K ++ +S +D Sbjct: 240 PHKLRHTAATMALSSGAELRVIQELLGHASPVTTARYAK-VGQKQL-LKATKALSENID 296 >gi|224824183|ref|ZP_03697291.1| tyrosine recombinase XerC [Lutiella nitroferrum 2002] gi|224603602|gb|EEG09777.1| tyrosine recombinase XerC [Lutiella nitroferrum 2002] Length = 323 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 46/293 (15%), Positives = 88/293 (30%), Gaps = 18/293 (6%) Query: 57 KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT 116 T+ + I+ Y +S + ++R ++ + G D +T Sbjct: 9 PDPSPEQSVPSSTSWEQRIAGYDQSLQLAGKSPHTRSAYRRDLQALAALQGAQDPATLTA 68 Query: 117 KHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 + IR V S + L++ R F W + QE + NPC + PK + Sbjct: 69 QQIRLAVARLHAKGHIGRSLARMLSAWRGFFDWLIEQEKLPANPCHGIRPPKSPKTLPKA 128 Query: 174 WTKEDMQQFKSFW-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-------NNI 221 + + + FE L GLR S+ + L + Sbjct: 129 LPVDATSALLDAPIDPEDDLALRDQAMFELLYSCGLRLSELTGLDLADLDLGEGLLTAHG 188 Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 KT+ + + G+ F ++++ Q + A + G Sbjct: 189 KGNKTRILPIGRQARQALERWLAIRPSQPGEGAVFTGKSGRRLSGRQVEKRLEQWAQRHG 248 Query: 282 --VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 + H +R A+ + + G + + YT D L Sbjct: 249 SDRHVHPHMLRHSFASHLLQSSGDLRAVQELLGHANLSTTQIYT-SLDFQHLA 300 >gi|254501286|ref|ZP_05113437.1| tyrosine recombinase XerD [Labrenzia alexandrii DFL-11] gi|222437357|gb|EEE44036.1| tyrosine recombinase XerD [Labrenzia alexandrii DFL-11] Length = 307 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 92/301 (30%), Gaps = 33/301 (10%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP--- 130 + + + A N+ + + G + + HI + Sbjct: 7 LENFLEMLAAERGAAENTLAGYRRDLEDFSDFLGRTKLAEANSDHISGYMSDLTRRGFAE 66 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----------- 179 +S + L++++ +K+ + +P ++ PK++ + + +++ Sbjct: 67 TSQARRLSALKQFYKFLYSEGSRQDDPTRTLSAPKKRGSLPKVLSMDEVDRLIETARQQT 126 Query: 180 ---QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCR-AGVQHLQNNIFSIKTQKTGTIITV 235 + + + E L +GLR S+ L++ K G V Sbjct: 127 KVSHKSAAAALRAQRMYTLIEVLYATGLRVSELVALPVTAALRDARLIEIKGKGGKERLV 186 Query: 236 ELPDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-- 283 L + M F + + F K A AG++ Sbjct: 187 PLSHAAQSAMKMYVGLRSAEGAYENSPWLFPSHGGSGHLTRQHFGRDLKDLAIAAGLDAS 246 Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSRRISS 341 S H +R A+ GA + G + + YT D R+R ++ + ++ Sbjct: 247 KVSPHVLRHAFASHLLQNGADLRVVQQLLGHADISTTQIYTHVLDERLRELVETAHPLAR 306 Query: 342 V 342 Sbjct: 307 K 307 >gi|294054307|ref|YP_003547965.1| tyrosine recombinase XerD [Coraliomargarita akajimensis DSM 45221] gi|293613640|gb|ADE53795.1| tyrosine recombinase XerD [Coraliomargarita akajimensis DSM 45221] Length = 312 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 48/287 (16%), Positives = 98/287 (34%), Gaps = 24/287 (8%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR-- 126 + + LA N+ S+ Q G ++ + + + + Sbjct: 15 EAVESFLVWLELERGLATNTVQSYAQDLCQFASFLHRAGIGSWQAVEAEQVSAWTAELAV 74 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + SS + L+++R+ + VR++ A + V PK++ ++E++ + Sbjct: 75 GYARSSQARKLSAVRMFARHLVREQIRADDFTELVSAPKQRRSLPEVLSREEVDLLLNAP 134 Query: 187 ----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 G + R E SGLR S+ C +Q + + ++ V + Sbjct: 135 SMSTPHGLRDRAILELFYSSGLRVSELCGLPLQSVNLDEGFLRVYGKGSKERVVPIGAAA 194 Query: 242 MKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 + L + F+ Q ++ + K ATK G+ K H + Sbjct: 195 VAALKDYLAVGRSQFVQAKTGSEVFLSQRGQAISRKMVWVMIKQHATKVGIKKPIKPHLL 254 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 R AT + GA + G + + YT RL +++ Sbjct: 255 RHSFATHLLEGGADLRAIQEMLGHADISTTQIYT-AVQANRLADEHA 300 >gi|168823065|ref|ZP_02835065.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|204927994|ref|ZP_03219194.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204322316|gb|EDZ07513.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205340622|gb|EDZ27386.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320087473|emb|CBY97238.1| Tyrosine recombinase xerD [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 298 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 41/279 (14%), Positives = 91/279 (32%), Gaps = 24/279 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESRKH 128 I ++ + +LA N+ ++ ++ + + + + + Sbjct: 8 IEQFLDALWLERNLAENTLSAYRRDLSMVVAWLHHRGKTLATAQADDLQTLLAERVEGGY 67 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +S+ + L++MR F+ R++ +P + PK + ++ +++ Sbjct: 68 KATSSARLLSAMRRFFQHLYREKCREDDPSAQLASPKLPQRLPKDLSEAQVERLLQAPLI 127 Query: 189 G----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243 + + E L +GLR S+ + + ++ V L + + Sbjct: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187 Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290 L + F + Q+M F K A AG++ S H +R Sbjct: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + GA + G + + YT A Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286 >gi|238855698|ref|ZP_04645995.1| tyrosine recombinase XerC [Lactobacillus jensenii 269-3] gi|260664453|ref|ZP_05865305.1| tyrosine recombinase XerC [Lactobacillus jensenii SJ-7A-US] gi|282932212|ref|ZP_06337659.1| tyrosine recombinase XerC [Lactobacillus jensenii 208-1] gi|313472147|ref|ZP_07812639.1| tyrosine recombinase XerC [Lactobacillus jensenii 1153] gi|238831683|gb|EEQ24023.1| tyrosine recombinase XerC [Lactobacillus jensenii 269-3] gi|239529518|gb|EEQ68519.1| tyrosine recombinase XerC [Lactobacillus jensenii 1153] gi|260561518|gb|EEX27490.1| tyrosine recombinase XerC [Lactobacillus jensenii SJ-7A-US] gi|281303662|gb|EFA95817.1| tyrosine recombinase XerC [Lactobacillus jensenii 208-1] Length = 302 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 41/303 (13%), Positives = 105/303 (34%), Gaps = 26/303 (8%) Query: 69 TTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGV 123 T K L+ +++ + + + ++ + Q G ++++T++ I + Sbjct: 1 MTKKSLLEQFKDYLAYERGYSNLTLTAYLNDLKQAEDFWKNNGGFNGFKQVTSRDIEIYI 60 Query: 124 ESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 S T +S + L+S++ +K+ R+ V ++P +V ++ + + + +++ Sbjct: 61 ASLASTGLSQASQARKLSSLKSFYKFLTRRNLVEVDPTQTVSIHRKSKKLPEFFYEPEIK 120 Query: 181 QFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-----------IK 225 + S + + FE +G+R S+ ++ + ++ Sbjct: 121 KVLDSLSASDKLTVRNKAMFELFYATGMRVSEVSNLTLEQIDFDVQMILVHGKGNKDRYV 180 Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--N 283 + + L F++N ++ + + K G+ N Sbjct: 181 PFGDYAKACLLRYLNEARRLFNPDDDNHYVFLDNRGHQLTSRGIEYIMRKVFQKGGLSAN 240 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343 H +R AT + GA + G +++ + YT RL + Sbjct: 241 VHPHELRHTFATQMLNNGADLRSVQELLGHESLSTTQIYTHVT-MERLQKDYEKFFPRNK 299 Query: 344 DSD 346 D Sbjct: 300 GKD 302 >gi|226949108|ref|YP_002804199.1| tyrosine recombinase XerD [Clostridium botulinum A2 str. Kyoto] gi|226843555|gb|ACO86221.1| tyrosine recombinase XerD [Clostridium botulinum A2 str. Kyoto] Length = 291 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 39/278 (14%), Positives = 102/278 (36%), Gaps = 19/278 (6%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTPS 131 +I Y K +L+ N+ ++ ++ + + T I + V+ + Sbjct: 4 IIENYIKDLQKKNLSKNTLEAYRRDVEKFSEFVRNREEKILSVDTVTIMAFVQYLQREGR 63 Query: 132 SAIQFLT---SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187 + + S+R +K+ +++ V+ +P L E PK + + + E++ + + Sbjct: 64 ATSSIVRNIVSIRNFYKYLIKKNMVSEDPTLGYEIPKIERTIPKILSVEEVDKLLNSPDS 123 Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVELPDGFMKL 244 +G + + E + +G++ ++ + + IK + + + + +K Sbjct: 124 SKKGLRDKAMLELMYATGVKITELLNLNIYDINLKFNYIKCRGSKKRERIIPIGSYAIKC 183 Query: 245 LAMTPIGKETFFINNDKQ--------KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294 L + + N +M F K A +A ++K ++ +R A Sbjct: 184 LKNYLEVRPAINVYNLDYLFLNLKGTQMTRQGFWKIIKFYAKEASIDKEIDSYTLRHSFA 243 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 GA + G K + + Y+ + + ++ Sbjct: 244 VHLLQNGADIKSVQELLGHKDLAATQIYSSISKKSKIA 281 >gi|156932654|ref|YP_001436570.1| site-specific tyrosine recombinase XerD [Cronobacter sakazakii ATCC BAA-894] gi|156530908|gb|ABU75734.1| hypothetical protein ESA_00437 [Cronobacter sakazakii ATCC BAA-894] Length = 319 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 43/279 (15%), Positives = 92/279 (32%), Gaps = 24/279 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVESRKH 128 I ++ + +LA NS ++ ++ T + + + + Sbjct: 29 IEQFLDALWLERNLAENSLSAYRRDLSMVVEWLHHRGLSLATVQSGDLQTLLAERVEGGY 88 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-- 186 +S + L+++R LF+ R++ +P + PK + ++ +++ Sbjct: 89 KATSTARMLSAVRRLFQHLYREKIRDDDPSALLASPKLPQRLPKDLSEAQVERLLQAPTV 148 Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243 + + E L +GLR S+ + + ++ V L + + Sbjct: 149 EEPIELRDKAMLEVLYATGLRVSELVGLTMSDVSLRQGVVRVIGKGNKERLVPLGEEAVY 208 Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290 L + F +N ++M F K A AG++ S H +R Sbjct: 209 WLEQYLTHGRPWLLNGQSLDILFPSNRARQMTRQTFWHRIKHYAQLAGIDSEKLSPHVLR 268 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + GA + G + + YT A Sbjct: 269 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 307 >gi|255534331|ref|YP_003094702.1| Integrase [Flavobacteriaceae bacterium 3519-10] gi|255340527|gb|ACU06640.1| Integrase [Flavobacteriaceae bacterium 3519-10] Length = 302 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 52/288 (18%), Positives = 98/288 (34%), Gaps = 28/288 (9%) Query: 69 TTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSG 122 T I ++ + + + N+ ++ ++ + G +I+ ++I+ Sbjct: 2 MTWTEKIKDFESFLKYERNFSDNTLDAYLRDIRKLSDYAEFHLDGTGPL-EISYENIQEY 60 Query: 123 VESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + K + S ++++S++ FK+ E NP +E PK + ED+ Sbjct: 61 LFQLSKQKFSERSQARWISSIKAFFKYLAEDEAREDNPTTLLESPKLGLYLPDTLSFEDV 120 Query: 180 QQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIIT 234 ++ + G + + E L GLR S+ + ++ K Sbjct: 121 ERIIKAINISTDLGRRNQCMIEVLYGCGLRVSELIDLKISNINFKELYLKVDGKGDKSRF 180 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQ-----------KMNATQFSIWFKAKATKAGVN 283 V L KL+ + + N K M+ I K KAG+N Sbjct: 181 VPLATYTAKLIKEYIQEIRSKYKINKKCEDVLFLNSRGSAMSRVIVFIIIKELTEKAGIN 240 Query: 284 K--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 K S H R AT GA + G ++ E YT + Sbjct: 241 KKISPHTFRHSFATHLLQNGADLRYIQEMLGHSSITTTEIYTHLKNEE 288 >gi|319654625|ref|ZP_08008706.1| hypothetical protein HMPREF1013_05328 [Bacillus sp. 2_A_57_CT2] gi|317393691|gb|EFV74448.1| hypothetical protein HMPREF1013_05328 [Bacillus sp. 2_A_57_CT2] Length = 328 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 46/267 (17%), Positives = 97/267 (36%), Gaps = 12/267 (4%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSA 133 I + + L+ + S+ + +K ITT IR + S +H SS Sbjct: 55 IQLFLSAKKLEGLSKVTLDSYLLELNTFSKKV-KKRVEDITTAEIRVFLGSFEHLKLSSV 113 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193 + L+ ++ F W +E++ +P ++ PK++ + + E+++ + + R Sbjct: 114 SRKLSVLKSFFGWLTAEEFLQRDPTTKIKPPKKEKRLPKALSIEELELLRESCKTN-RQR 172 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252 E L +G R S+ + N S + V M L + + Sbjct: 173 AFLEILYATGCRLSEVHALNKSGINNRTASCRVIGKGNKEREVYFSPKAMYHLRKYLMNR 232 Query: 253 ETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304 ++++ A +AG++K S H +R AT++ + GA Sbjct: 233 TDDCEALMVTERKPYRRLSQRGIQREISIIAKQAGLDKKISPHTMRHTFATLTLNNGADI 292 Query: 305 HELMATYGWKTVDQAETYTKGADRIRL 331 + A G + + Y + + + Sbjct: 293 AAVQALLGHEDPATTQIYAQLTEEKKR 319 >gi|331082291|ref|ZP_08331417.1| hypothetical protein HMPREF0992_00341 [Lachnospiraceae bacterium 6_1_63FAA] gi|330400777|gb|EGG80378.1| hypothetical protein HMPREF0992_00341 [Lachnospiraceae bacterium 6_1_63FAA] Length = 294 Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 43/271 (15%), Positives = 100/271 (36%), Gaps = 23/271 (8%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHI---RSGVESRK 127 I E+ + H + N+ +S+E ++ + G ++ +++ + +E + Sbjct: 5 IQEFIEHLHNTRGTSRNTEVSYERDLKKLEQFLKQEGILEWHQVSAVLLNSYIMYLERKN 64 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 SS + + S+R F++ ++E NP ++ PK + + T +++ S Sbjct: 65 FAASSISRSVASIRAFFQYLCQRECWRENPAEGLKAPKIEKKAPGILTVDEVDLLLSQPK 124 Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL------ 237 E + + R E L +G+R S+ ++ + + + ++ + Sbjct: 125 ENTAKGVRDRAMLELLYATGIRVSELIHLTLRDVNLKLGYLTCSQSERERVIPFGATAKT 184 Query: 238 ----PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRK 291 + + + E F+N + M+ F K A AG+ + + H +R Sbjct: 185 AVEAYMAWARAELLGENSSEWLFVNCSGKSMSRQGFWKILKGYAVSAGIQQDITPHTLRH 244 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETY 322 A GA + G + + Y Sbjct: 245 SFAAHLVQNGADLKSVQEMMGHSDISTTQIY 275 >gi|312793099|ref|YP_004026022.1| tyrosine recombinase xerd [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180239|gb|ADQ40409.1| tyrosine recombinase XerD [Caldicellulosiruptor kristjanssonii 177R1B] Length = 291 Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 39/278 (14%), Positives = 98/278 (35%), Gaps = 23/278 (8%) Query: 74 LISEYRKSAHWGSL-AVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRK 127 +I + + + N+ S+ + I + + T ++ Sbjct: 3 IIEAFGNHLQRQNRFSQNTISSYLRDAKKYIEFLDNIKIKLENTSQATLIAYIISMQKSG 62 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + S+ + + S++V + + + + + + +E PK + + T++++++ S Sbjct: 63 KSNSTIARAIVSLKVFYDFL-KTQNIVDIGKIEIEPPKLEKSPPQILTRDEVEKLLSCPK 121 Query: 188 E----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 E G + + E L +G+R S+ + + I + + + + Sbjct: 122 EDDIKGIRDKAMLELLYATGIRVSELINLNLDDINLEHGYIICKNKKRDRVIPIGSYAIS 181 Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291 + + F+N + ++M F K A AG++K + H +R Sbjct: 182 AVERYLRHSRPYLAKNKDEEALFLNFNGERMTRQGFWKIVKFYAQSAGIDKEITPHVLRH 241 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + GA + G + + Y + A+ Sbjct: 242 SFATHLIENGADVRAVQQMLGHADISTTQRYLQVANVK 279 >gi|150390286|ref|YP_001320335.1| tyrosine recombinase XerD [Alkaliphilus metalliredigens QYMF] gi|149950148|gb|ABR48676.1| tyrosine recombinase XerD [Alkaliphilus metalliredigens QYMF] Length = 294 Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 42/274 (15%), Positives = 89/274 (32%), Gaps = 24/274 (8%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR------KHTPS 131 Y K+ L+ N+ S++ Q D I + + S Sbjct: 11 YLKNEKH--LSTNTLESYKRDVKQFTSYLAGSDIHDIEETTKTTIITYLFYLQKEGRAAS 68 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI----RPWTKEDMQQFKSFWS 187 + + L S+R + + + + V I+P ++E PK + + +QQ + Sbjct: 69 TISRSLASLRSFYHYLLLHKKVDIDPTFNLESPKMVKKPPNILTLEEVELLLQQPLNTTP 128 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247 +G + + E L +G+R ++ ++ + N+ I+ + + + L Sbjct: 129 KGIRDKAMLELLYATGIRVTELISLNLEDVNVNLGYIRCCNNTKERVIPIGTLSLIALQK 188 Query: 248 TPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSAT 295 F N ++ F K +A + K + H +R AT Sbjct: 189 YINYYRDAFTKDNEEKSLFLNYHGGRLTRQGFWKIIKVYTKQAAIEKSITPHTLRHSFAT 248 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + GA + G + + Y + Sbjct: 249 HLIENGADLKSVQEMLGHSDISTTQVYAQLTKHK 282 >gi|329962342|ref|ZP_08300347.1| tyrosine recombinase XerD [Bacteroides fluxus YIT 12057] gi|328530203|gb|EGF57084.1| tyrosine recombinase XerD [Bacteroides fluxus YIT 12057] Length = 317 Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 56/297 (18%), Positives = 104/297 (35%), Gaps = 25/297 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKH-- 128 +I +Y + SL+ N+ ++ + ++++R D +T ++ Sbjct: 16 IIRKYNQYLKLEKSLSPNTLDAYRTDLEKLLRFLEAEKIDILAVTLDDLQRFTAGLHDIG 75 Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185 P S + L+ ++ F + V +Y+ +P +E PK + T E++ + S Sbjct: 76 IHPRSQARILSGIKSFFHFLVLADYLEGDPSELLEGPKIGFKLPEVLTVEEIDKIISTVD 135 Query: 186 --WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFM 242 +EG + R E L GLR S+ C + L + F K V + + Sbjct: 136 LSTNEGQRNRAILETLYSCGLRVSELCNLKISDLYFDEGFIKVEGKGSKQRLVPISPRAI 195 Query: 243 KLLAMTPIGKETFFIN-----------NDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 K + + + ++ K A KAG+ K S H Sbjct: 196 KEIKNWFADRNEKWKIKKDFEDYVFLARWGNGISRIMIFHLIKELAEKAGITKNISPHTF 255 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346 R AT + GA + G +++ E YT DR L + + Sbjct: 256 RHSFATHLLEGGANLRAIQCMLGHESIATTEIYTH-IDRNMLRSEIIEHHPRNIKYR 311 >gi|218706400|ref|YP_002413919.1| site-specific tyrosine recombinase XerD [Escherichia coli UMN026] gi|293406393|ref|ZP_06650319.1| xerD [Escherichia coli FVEC1412] gi|298382129|ref|ZP_06991726.1| tyrosine recombinase xerD [Escherichia coli FVEC1302] gi|300896210|ref|ZP_07114759.1| tyrosine recombinase XerD [Escherichia coli MS 198-1] gi|301027413|ref|ZP_07190750.1| tyrosine recombinase XerD [Escherichia coli MS 69-1] gi|218433497|emb|CAR14400.1| site-specific tyrosine recombinase [Escherichia coli UMN026] gi|291426399|gb|EFE99431.1| xerD [Escherichia coli FVEC1412] gi|298277269|gb|EFI18785.1| tyrosine recombinase xerD [Escherichia coli FVEC1302] gi|300359944|gb|EFJ75814.1| tyrosine recombinase XerD [Escherichia coli MS 198-1] gi|300394921|gb|EFJ78459.1| tyrosine recombinase XerD [Escherichia coli MS 69-1] Length = 298 Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 42/279 (15%), Positives = 96/279 (34%), Gaps = 24/279 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR---KH 128 I ++ + +LA N+ ++ ++ + +++ + R + Sbjct: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGSTLATAQSDDLQALLAERLEGGY 67 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +S+ + L+++R LF++ R+++ +P + PK + ++ +++ Sbjct: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 Query: 189 G----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243 + + E L +GLR S+ + + ++ V L + + Sbjct: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187 Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290 L + F + Q+M F K A AG++ S H +R Sbjct: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + GA + G + + YT A Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286 >gi|194016964|ref|ZP_03055577.1| tyrosine recombinase XerD [Bacillus pumilus ATCC 7061] gi|194011570|gb|EDW21139.1| tyrosine recombinase XerD [Bacillus pumilus ATCC 7061] Length = 296 Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 42/269 (15%), Positives = 101/269 (37%), Gaps = 24/269 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVESRKHTPSSAI---QFL 137 L+ N+ +S++ + D + +T HI ++ K S+ + L Sbjct: 16 RGLSENTIVSYKRDLQNYLSFLMTHEQLTDIKDVTRLHIIHYLKKLKEEGKSSKTSVRHL 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPR 193 +S+R ++ +R++ +P ++E K + + + + ++++ ++ + + + Sbjct: 76 SSIRSFHQFLLREKVTTDDPSWNIETQKTERKLPKVLSLGEVEKLLDTPNQHTPFDYRDK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT---- 248 E L +G+R S+ + + + I+ V + + + Sbjct: 136 AMLELLYATGIRVSEMLDLTLADVHLTMGFIRCFGKGRKERIVPIGEAAASAIEEYLEKG 195 Query: 249 ------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 + F+N+ +KM+ F K +A +AG+ K + H +R AT + Sbjct: 196 RSKLLKKQPADALFLNHHGKKMSRQGFWKNLKKRALEAGIQKELTPHTLRHSFATHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329 GA + G + + YT Sbjct: 256 GADLRAVQEMLGHADISTTQIYTHVTKTR 284 >gi|163783234|ref|ZP_02178228.1| Phage integrase [Hydrogenivirga sp. 128-5-R1-1] gi|159881568|gb|EDP75078.1| Phage integrase [Hydrogenivirga sp. 128-5-R1-1] Length = 369 Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 54/334 (16%), Positives = 112/334 (33%), Gaps = 28/334 (8%) Query: 17 RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76 + G+ Y +R P ++ + P + + Sbjct: 8 KKGRRYYVVIPIGHKRKWFPAGTTKREAEKVLAEKLAELNAGSSVLPPEVR---FSFFCE 64 Query: 77 EYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSA 133 E+ GS+ ++ +E + + GD +ITT ++ V R + +P++ Sbjct: 65 EWLSKYAKGSVKPSTFRRYEGIIRNHFMPRFGDKKLSRITTGMLQGYVAERLSQVSPTTV 124 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193 +Q + ++ +FK A Y+ NP +++RP+R+ + I T E+++ E R Sbjct: 125 LQEVVLLKEMFKHAQSWGYIKHNPAQNLQRPRREKKEIDILTPEEVEFLLENTHE--HYR 182 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIF--------SIKTQKTGTIITVELPDGFMKLL 245 +AF + +GLR + + + T +L Sbjct: 183 VAFLTAVMTGLRAGELWGLKWDDIDWHSKQIYVRRTLWNGEFHTPKSRHSIGKVDMPDVL 242 Query: 246 AMTPIGKETFFINNDKQ----------KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSA 294 E N + + +FK +AG+ S H +R +A Sbjct: 243 VEELKLWEIRCPPNKYNLVFPSPKGEPSEHQNVVNRYFKPALRRAGLRVVSFHSLRHTNA 302 Query: 295 TISADAGATAHELMATYGWKTVDQA-ETYTKGAD 327 +I AG + G +++ + Y + Sbjct: 303 SIRIRAGQNIKYIQRQLGHASINTTLDIYGHLFE 336 >gi|296135962|ref|YP_003643204.1| tyrosine recombinase XerD [Thiomonas intermedia K12] gi|295796084|gb|ADG30874.1| tyrosine recombinase XerD [Thiomonas intermedia K12] Length = 317 Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 52/313 (16%), Positives = 105/313 (33%), Gaps = 35/313 (11%) Query: 59 EYINSPRKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSG---DFDYRKI 114 E+ +P T+ + + L+ N+ ++ + R + Sbjct: 9 EWPPAPEACAATIDRFCDALWLED----GLSPNTLAAYRRDLTLMARWLAFSRRPPLIEA 64 Query: 115 TTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 T + +++ + +R + +S+ + L +R ++WA+R+ + +P L ++ ++ + Sbjct: 65 TLRDVQAYIAARFVQSKATSSNRRLVVLRRFYRWALREHLRSDDPTLQLDTARQPPRRPK 124 Query: 173 PWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQ 227 ++ ++ + + + R E L SGLR S+ V + + Sbjct: 125 TLSEAQVEALLAAPEVDTPLGLRDRAMLELLYASGLRVSELVALPVVRVSLDQGVVQIAG 184 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK-----------------MNATQFS 270 K G V L + M F Sbjct: 185 KGGKERLVPFGSAAQDWLQNYLRTARHELLQGRDSPFLFVTARSGQSARETTGMTRQMFW 244 Query: 271 IWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 + KA A KAG+ S H +R AT + GA + G + + YT A R Sbjct: 245 MRIKAYARKAGIDVPLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHIA-R 303 Query: 329 IRLGIKNSRRISS 341 RL ++R Sbjct: 304 ERLKTLHARHHPR 316 >gi|226311968|ref|YP_002771862.1| tyrosine recombinase [Brevibacillus brevis NBRC 100599] gi|226094916|dbj|BAH43358.1| probable tyrosine recombinase [Brevibacillus brevis NBRC 100599] Length = 295 Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 41/278 (14%), Positives = 96/278 (34%), Gaps = 24/278 (8%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRK 127 LI ++ L+ N+ S++ G T HI + + Sbjct: 2 DSLIDQFIHFLTVEKGLSRNTLESYQRDMVAFTSYLQEQGVTRVEDSTRTHIIGYLLVLR 61 Query: 128 HTPS---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + + + S+R +++ +R +Y+ +P + +E PK + + + E++++ Sbjct: 62 EKGRATATLSRNMASIRAFYQFLIRDKYIDKDPSIHLETPKIEKRLPKVLSVEEVERLLE 121 Query: 185 ----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239 G + + E L +G+R S+ + ++ +K K + L Sbjct: 122 SPPVNHPAGLRDKAMLELLYATGIRVSELVNLDSADVNLDMGFVKCLGKGSKERIIPLGS 181 Query: 240 GFMKLLAMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287 ++++ + N+ +++ F K A K+ + + H Sbjct: 182 VAIQMVRHYLQAGRPKMVKGTGDTALFLNHLGKQITRQGFWKIIKRYAQKSNIRAEITPH 241 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 +R AT + GA + G + + YT Sbjct: 242 TLRHSFATHLLENGADLRSVQEMLGHADISTTQIYTHV 279 >gi|187477407|ref|YP_785431.1| site-specific tyrosine recombinase XerD [Bordetella avium 197N] gi|115421993|emb|CAJ48515.1| tyrosine recombinase [Bordetella avium 197N] Length = 314 Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 45/294 (15%), Positives = 92/294 (31%), Gaps = 31/294 (10%) Query: 71 LKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGV 123 + I + + LA N+ ++ R + + I + Sbjct: 21 IDAFIDALWLED----GLAANTLAAYRRDLSAFARWLQQTGQAASGQLCEASGGDIEAWF 76 Query: 124 ESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 P++A + L ++R + WA+R++ +PCL + ++ + ++ ++ Sbjct: 77 AVLHQDSRPATANRRLATLRRFYAWALREKRTGTDPCLKLAAARQPLRVPKTLSEAQVEA 136 Query: 182 FKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITV 235 G+ + R E L +GLR S+ + + ++ + V Sbjct: 137 LLGAPDLGTPRGLRDRAMLETLYATGLRVSELVELQTLDVSLSDGVVRVVQGKGGKDRLV 196 Query: 236 ELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--N 283 + L F+ Q M+ F K A +A V Sbjct: 197 PMGAEAAHWLQRYLNQARPVLVGARQSDALFVTGRAQAMSRQAFWQLVKKYAQRADVHAP 256 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 S H +R AT + GA + G + + YT A + + Sbjct: 257 LSPHVLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKALHAAH 310 >gi|229543943|ref|ZP_04433002.1| tyrosine recombinase XerD [Bacillus coagulans 36D1] gi|229325082|gb|EEN90758.1| tyrosine recombinase XerD [Bacillus coagulans 36D1] Length = 297 Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 43/270 (15%), Positives = 96/270 (35%), Gaps = 25/270 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDY----RKITTKHIRSGVESRKHTPS---SAIQFL 137 LA N+ S++ +R + ++T HI + K + + + Sbjct: 16 KGLAENTIASYKRDLHSYLRYLQKVELVTSWNEVTRFHILHFLNFLKQQGKSSKTIARHV 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL--- 194 S+R ++ +R+++ +P + +E PK + + + ++++ + + + Sbjct: 76 ASIRSFHQFLLREKFAGQDPTVHIETPKPERTLPKVLSVQEVEALLAAPKGDTPLHMRDG 135 Query: 195 -AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT---- 248 E L +G+R S+ + L ++ IK + + L Sbjct: 136 AMLELLYATGMRVSEMTGLNLDDLHLSMGFIKCIGKGDKERIIPIGRTASAALERYLKEG 195 Query: 249 -------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 + F+N+ +++ F KA A KA + K + H +R AT + Sbjct: 196 RPKLVSKTNRTDALFLNHHGARLSRQGFWKILKALAKKANIEKDITPHTLRHSFATHLIE 255 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRI 329 GA + G + + YT + Sbjct: 256 NGADLRAVQEMLGHADISTTQIYTHVSKTR 285 >gi|146329514|ref|YP_001210015.1| tyrosine recombinase XerD [Dichelobacter nodosus VCS1703A] gi|146232984|gb|ABQ13962.1| tyrosine recombinase XerD [Dichelobacter nodosus VCS1703A] Length = 297 Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 43/278 (15%), Positives = 91/278 (32%), Gaps = 23/278 (8%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHT 129 L +Y + L+ + ++ Q+ + D + T + + R ++ Sbjct: 10 ELFIDYLWTQV--GLSDATLSAYRGDLQQVQKILADVPLKSATIEQMMQVLAQFHDRGYS 67 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-- 187 +S + +S+ F + + Q+ NP + R K + + ++ D++ S Sbjct: 68 HTSMARMRSSLNRFFSYQIEQKERTENPMHFLGRTKIRRHLPQTMSESDVEALLSAPDVQ 127 Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKL 244 G + R E L GLR S+ + + + + K V + + Sbjct: 128 TILGLRDRAMLELLYACGLRVSELVGLTLHQIALDVGYVQILGKGDKERLVPFGEIAHEW 187 Query: 245 LAMTPI----------GKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRK 291 L + F++ ++ F K G++ S H +R Sbjct: 188 LQRYIQEARPQLLGQKMSDYVFVSQRGAALSRQAFWYRLKVYVCAVGLDSNKISPHTLRH 247 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 A+ GA + G + + YT AD+ Sbjct: 248 AFASHLLAHGADLRSIQMLLGHSDLSTTQIYTHIADQR 285 >gi|170018860|ref|YP_001723814.1| site-specific tyrosine recombinase XerD [Escherichia coli ATCC 8739] gi|169753788|gb|ACA76487.1| tyrosine recombinase XerD [Escherichia coli ATCC 8739] Length = 298 Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 42/279 (15%), Positives = 94/279 (33%), Gaps = 24/279 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRKH 128 I ++ + +LA N+ ++ ++ T + + + + Sbjct: 8 IEQFLDALWLEKNLAENTLNAYCRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +S+ + L+++R LF++ R+++ +P + PK + ++ +++ Sbjct: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 Query: 189 G----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243 + + E L +GLR S+ + + ++ V L + + Sbjct: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187 Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290 L + F + Q+M F K A AG++ S H +R Sbjct: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + GA + G + + YT A Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286 >gi|260583822|ref|ZP_05851570.1| integrase/recombinase XerC [Granulicatella elegans ATCC 700633] gi|260158448|gb|EEW93516.1| integrase/recombinase XerC [Granulicatella elegans ATCC 700633] Length = 294 Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 42/261 (16%), Positives = 90/261 (34%), Gaps = 25/261 (9%) Query: 90 NSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGVESRKHT---PSSAIQFLTSMRVL 143 + +++ +Q + + ++T +R + SS +FL+S+R Sbjct: 2 KTVEAYQRDIEQFLMFLKEIPLTKLSEVTAVDVRIYLGKLHQQQYNRSSISRFLSSLRSF 61 Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWSEGSQPRLAFEFL 199 +++ + ++V NP S+ K + + +++M++F + R E L Sbjct: 62 YQYLLEHDFVEENPFASISYKKGQKRLPEFFYEDEMEKFIASIDGNQPLDQRNRALIEVL 121 Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKLLA------------ 246 +G+R S+ +Q L I K V + D + L Sbjct: 122 YATGMRVSELTELTLQQLDLKNGVILVIGKGSKERYVPIGDFATEALQLYLEESRSSLMS 181 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATA 304 + F+N+ + T ++G+ H +R AT + GA Sbjct: 182 QYKKEHASVFVNHLGDPITTTGVRYILNQLLQESGLQLKIHPHMLRHTFATHLLNNGADM 241 Query: 305 HELMATYGWKTVDQAETYTKG 325 + G ++ + YT Sbjct: 242 KTVQELLGHVSLSSTQIYTHV 262 >gi|117924957|ref|YP_865574.1| tyrosine recombinase XerD subunit [Magnetococcus sp. MC-1] gi|117608713|gb|ABK44168.1| tyrosine recombinase XerD subunit [Magnetococcus sp. MC-1] Length = 296 Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 49/279 (17%), Positives = 95/279 (34%), Gaps = 23/279 (8%) Query: 74 LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESRKH-- 128 L+ + LA N+ I++ D + + +I + + + Sbjct: 6 LMERFLDELLIEHGLAANTLIAYRRDLDALRSFCASRNLTLPEIQRQDVLEYIGELAQKS 65 Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 TPS+ + L++MR LF+ V + + +P V RPK + + ++ + + Sbjct: 66 LTPSTVARKLSAMRRLFRHLVDKGIRSEDPTGGVYRPKPQRKLPNTLSEAETEALLYAPD 125 Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 G + E + +GLR S+ + L ++ V + + Sbjct: 126 TSTELGMRDAAMLELMYATGLRVSELVTLTLDGLDEENGFVRVIGKGNKERIVPMGEAAT 185 Query: 243 KLLAMTPI----------GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290 +++ F++N M F K A +A + S HG+R Sbjct: 186 EMVIRYRHSARQVLLKGGRCNDLFLSNRGAAMTRHNFWHIVKRYAYEANIMKPLSPHGIR 245 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + GA + G + E YT A+ Sbjct: 246 HAFATHLLNHGADLRAVQMMLGHADISTTEIYTHVANAR 284 >gi|330964079|gb|EGH64339.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. actinidiae str. M302091] Length = 298 Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 53/291 (18%), Positives = 108/291 (37%), Gaps = 24/291 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR---K 127 LI ++ + L+ N+R S+ S + D + I + R Sbjct: 8 LIDQFLDTLWLEKGLSDNTRDSYRSDLALFNGWLQERNVDLPSAGREVILDHLAWRVDNA 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 + P S +FL+ R +++ +R++ +A++P L ++ P+ + ++ D++ + Sbjct: 68 YKPRSTARFLSGARGFYRYLLREKLIAVDPTLQIDMPQLGKPLPKSLSEADVEALLAAPD 127 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 G + R E L GLR ++ ++ + ++ V + + + Sbjct: 128 LSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEEAI 187 Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290 + G F + +M F K +AT AG++KS H +R Sbjct: 188 VWVERYMRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGISKSLSPHTLR 247 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 AT + GA + G + + YT A R RL +++ Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQEMHAKHHPR 297 >gi|260655111|ref|ZP_05860599.1| integrase/recombinase XerD [Jonquetella anthropi E3_33 E1] gi|260630222|gb|EEX48416.1| integrase/recombinase XerD [Jonquetella anthropi E3_33 E1] Length = 319 Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 43/285 (15%), Positives = 92/285 (32%), Gaps = 18/285 (6%) Query: 71 LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSGVES- 125 L+ I Y + + + +++ S +Q +G D +T + +R + Sbjct: 26 LETWIGRYIDWISLAQNCSPATALNYRSDLEQFAAFAGQKGEADLSALTPERVRLFIRGL 85 Query: 126 --RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + +S + L+++R + Q + +P L + PK + T++ + + Sbjct: 86 SGWGLSATSVSRKLSALRGFCGYLTDQSAIPSDPTLPIRGPKWPDHLPQALTQDAVNRLI 145 Query: 184 SF---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPD 239 S ++ R E +GLR ++ L + K V Sbjct: 146 SAAGTIEPAARNRCLLELAYSAGLRVAELVSLKWSDLDETERWITVMGKGSKERMVPYGQ 205 Query: 240 GFMKLLAMTPIGKETFFINNDKQKM-----NATQFSIWFKAKATKAGVNK-SAHGVRKFS 293 LA +A + AG S H +R Sbjct: 206 WAASALAEWKAQCPPSEKGWVFPGKGGKSLTERTVHRLVEAASQLAGTPGASPHTLRHCF 265 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337 AT + GA+ + G +++ + Y + + +R+R + Sbjct: 266 ATHMLEGGASVKAVQELLGHESLLTTQRYLRISPERLRRSYDDVN 310 >gi|260593346|ref|ZP_05858804.1| integrase/recombinase XerD [Prevotella veroralis F0319] gi|260534622|gb|EEX17239.1| integrase/recombinase XerD [Prevotella veroralis F0319] Length = 314 Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 50/275 (18%), Positives = 100/275 (36%), Gaps = 23/275 (8%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVESR 126 ++S YR+ + N+ ++ D+++R + + K + + Sbjct: 9 DIVSRYRRYLKLEKGHSANTLDAYMRDLDKLLRYLAAENIDVLKVKLEDLEFFAASISDL 68 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 P S + L+ +R +++ V Y+ ++P +E PK+ + ++ + Sbjct: 69 GIGPRSLARILSGVRQFYRFLVLDGYLEVDPTELLESPKQPNHLPEVLSTAEVDLLEQAI 128 Query: 187 ----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241 EG + R E L GLR S+ + +L ++ K V + Sbjct: 129 DLSKWEGHRNRAIIEVLFSCGLRVSELTHLTLSNLYIEEQYLRVLGKGSKERLVPISPRA 188 Query: 242 MKLLAMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289 ++ L+ + I N + T I K A +AG+ K+ H + Sbjct: 189 LEELSYWFDDRNKMDIKPGEEDYVFLNRRGHHLTRTMILIMIKRYAVEAGIKKTISPHTL 248 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT + GA + A G +++ E YT Sbjct: 249 RHSFATSLLEGGADLRAIQAMLGHESIGTTEIYTH 283 >gi|28897283|ref|NP_796888.1| site-specific tyrosine recombinase XerD [Vibrio parahaemolyticus RIMD 2210633] gi|260363587|ref|ZP_05776407.1| tyrosine recombinase XerD [Vibrio parahaemolyticus K5030] gi|260876248|ref|ZP_05888603.1| tyrosine recombinase XerD [Vibrio parahaemolyticus AN-5034] gi|260896426|ref|ZP_05904922.1| tyrosine recombinase XerD [Vibrio parahaemolyticus Peru-466] gi|260902723|ref|ZP_05911118.1| tyrosine recombinase XerD [Vibrio parahaemolyticus AQ4037] gi|28805492|dbj|BAC58772.1| integrase/recombinase XerD [Vibrio parahaemolyticus RIMD 2210633] gi|308088405|gb|EFO38100.1| tyrosine recombinase XerD [Vibrio parahaemolyticus Peru-466] gi|308092863|gb|EFO42558.1| tyrosine recombinase XerD [Vibrio parahaemolyticus AN-5034] gi|308107651|gb|EFO45191.1| tyrosine recombinase XerD [Vibrio parahaemolyticus AQ4037] gi|308113317|gb|EFO50857.1| tyrosine recombinase XerD [Vibrio parahaemolyticus K5030] Length = 305 Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 41/281 (14%), Positives = 97/281 (34%), Gaps = 24/281 (8%) Query: 73 WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRK--SGDFDYRKITTKHIRSGVE---SR 126 L+ ++ + L+ N+ S+ + +++ + I+ ++ Sbjct: 13 ALVEQFLDAMWMERGLSENTLASYRNDLMKLLTWMDHHRYRLDFISLSGLQEYQTYLVDL 72 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + +S + L+++R LF++ R++ A +P + PK + ++E + Sbjct: 73 DYKQTSRARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPQRLPKDISEEQVDALLDAP 132 Query: 187 SEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGF 241 + + E L +GLR ++ ++++ ++ G V + + Sbjct: 133 DPNDPVELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVTGKGGKERLVPMGENA 192 Query: 242 MKLLAMTPIGKET----------FFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 + + F + ++M F K A AG++ S H Sbjct: 193 VDWIETFIQQGRPALLGETSSDVVFPSKRARQMTRQTFWHRIKYYAVIAGIDTDQLSPHV 252 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R AT + GA + G + + YT A Sbjct: 253 LRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER 293 >gi|156937341|ref|YP_001435137.1| phage integrase family protein [Ignicoccus hospitalis KIN4/I] gi|156566325|gb|ABU81730.1| phage integrase family protein [Ignicoccus hospitalis KIN4/I] Length = 604 Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 42/263 (15%), Positives = 74/263 (28%), Gaps = 12/263 (4%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT- 129 L I EY + + S+ S + GD ++ + V R Sbjct: 14 LSSAIEEYLEFMEVSGANKKTLKSYRSALKDFLSVVGDKRVGEVKYEDYVKWVRKRMKEG 73 Query: 130 -PSSAIQFLTSMRVLFKWA---VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 P S + + + + VR + PK + + + E++ Sbjct: 74 FPRSVKKDKRAQQTTLHYYSLFVRNFLKWLGLEGLPAVPKPRKDSVEALKPEEVAALLQA 133 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKL 244 E L LL +GLR S++ + + I K G V + Sbjct: 134 AYEDPIDFLIVSLLLETGLRASEALNVTLDKVDFRRRQIAVRGKYGKERVVFYGPLTEEA 193 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301 L ++ K A KAG+ H +R AT + G Sbjct: 194 LRRAWSYIAPSGRLV---PLSYQALYKRLKRLAKKAGLPEHKLHPHALRHTFATEALRRG 250 Query: 302 ATAHELMATYGWKTVDQAETYTK 324 + + G + + Y Sbjct: 251 MSLPAVQRLLGHSDIKTTQIYLH 273 >gi|15614092|ref|NP_242395.1| integrase/recombinase [Bacillus halodurans C-125] gi|34223074|sp|Q9KCP0|XERD_BACHD RecName: Full=Tyrosine recombinase xerD gi|10174146|dbj|BAB05248.1| integrase/recombinase [Bacillus halodurans C-125] Length = 299 Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 41/269 (15%), Positives = 93/269 (34%), Gaps = 24/269 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRKHTPS---SAIQFL 137 L+ N+ S+ Q I+ R IT + I + + S + + Sbjct: 19 RGLSNNTIQSYGRDLKQYIQYVERVEEIRSARNITRETILHYLYHLREQGRAETSIARAV 78 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPR 193 ++R ++ +R++ +P + VE PK + T E+++ + + + Sbjct: 79 AAIRSFHQFLLREKLSDSDPTVHVEIPKATKRLPKALTIEEVEALLNSPQGRDPFSLRNK 138 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA------ 246 E L +G+R S+ + + ++ ++ K + + + + Sbjct: 139 AMLELLYATGMRVSELIGLTLSDIHLSMGFVRCLGKGNKERIIPIGQVATEAVESYLANG 198 Query: 247 ----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 M + F+N+ + ++ F K A ++K + H +R AT + Sbjct: 199 RGKLMKKQSHDHVFVNHHGRPLSRQGFWKMLKQLAKNVNIDKPLTPHTLRHSFATHLLEN 258 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329 GA + G + + YT Sbjct: 259 GADLRAVQEMLGHADISTTQIYTHVTKTR 287 >gi|93004888|ref|YP_579325.1| tyrosine recombinase XerD [Psychrobacter cryohalolentis K5] gi|92392566|gb|ABE73841.1| Tyrosine recombinase XerD [Psychrobacter cryohalolentis K5] Length = 312 Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 53/325 (16%), Positives = 99/325 (30%), Gaps = 40/325 (12%) Query: 47 YMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS 106 A+ PK ++ I+E+R++ LA +R ++ + Sbjct: 3 RDRAVQQRQPKALAVDDEPA-------YITEFRQAMLARGLATRTRNAYVRDLRS-CELT 54 Query: 107 GDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163 + + + + TP + + L+S+R + W + NPC ++ Sbjct: 55 NHTALTRWQPEDVLHCLSILTQDGKTPRTQARMLSSLRQFYLWMIASNLREDNPCERIKS 114 Query: 164 PKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219 PK + + D+ + G + + E L GLR S+ ++ + Sbjct: 115 PKLGRPLPKDLAEADVDNLLAAPDSSTALGLRDKAMLEVLYACGLRVSELVNLSLEQVNL 174 Query: 220 NIFS-IKTQKTGTIITVELPDGFMKLLAMTPIG-------------KETFFINNDKQKMN 265 N T K V L + L + F+ M Sbjct: 175 NSGWLQITGKGNKTRLVPLGEYAADALEDYLTHGRGDLIAHLKAGNCQAVFLTAQGGYMT 234 Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 F K A A ++K S H +R AT + GA + G + + YT Sbjct: 235 RQNFWYLLKKYAKVASIDKDLSPHTLRHAFATHLLNHGADLRSVQLLLGHSDLSTTQIYT 294 Query: 324 KGADRIRLGIKNSRRISSVVDSDDP 348 + R+ + P Sbjct: 295 HV---------ATARLQKLHAEHHP 310 >gi|219848360|ref|YP_002462793.1| integrase family protein [Chloroflexus aggregans DSM 9485] gi|219542619|gb|ACL24357.1| integrase family protein [Chloroflexus aggregans DSM 9485] Length = 299 Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 37/284 (13%), Positives = 99/284 (34%), Gaps = 27/284 (9%) Query: 73 WLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------S 125 ++++ A ++ N+ ++ + +Q+ + + + + + Sbjct: 3 QYVAQFLAYLADERKMSANTTAAYRTDLEQLCSFLQERGIEQWNDVNTEAMLAFVITLKE 62 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-- 183 +K+ S+ + L +++ F + + V +P ++ P+ + ++ + + Sbjct: 63 KKYANSTVARRLAAIKSFFSFLRERNVVHHDPTEQLDAPRVDRFPPKAISQHQVDELLEL 122 Query: 184 ----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------- 232 + EG + + E L +G+R S+ + + +++ Sbjct: 123 PLQNNSGPEGLRDKAMLEVLYATGMRVSELVALNIDDISFTSKTVRCLGRQGRERILPLS 182 Query: 233 ------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKS 285 + L KL E F+N+ +++ F + K A +AG+ + + Sbjct: 183 EAALTALEEYLDIARPKLANHAHGNDEALFLNHRGKRLTRQGFWLILKEYADRAGLHDLT 242 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 H +R A G EL G ++ + YT + Sbjct: 243 PHMLRHSFAAHQLRNGVDLRELQERLGHASIATTQIYTHLTEEE 286 >gi|223041687|ref|ZP_03611883.1| site-specific recombinase XerD [Actinobacillus minor 202] gi|223017496|gb|EEF15911.1| site-specific recombinase XerD [Actinobacillus minor 202] Length = 301 Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 42/289 (14%), Positives = 96/289 (33%), Gaps = 24/289 (8%) Query: 66 KKPTTLKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIRSGV 123 K +L ++ ++ + L+ N+ S+ + + + I ++ + Sbjct: 3 KSAPSLDPIVEQFLDTLWQEHGLSDNTVSSYRLDLILFMEWLDESRAFLTIDHHALQEFL 62 Query: 124 ESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 R A + L+ +R F++ + Y +P + P++ + + +E + Sbjct: 63 GYRFDQGYKASSSLRMLSCLRKFFRFLYLENYRKDDPTAMLVAPRKPSRLPKTLNEEQVM 122 Query: 181 QFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------- 229 + + + E L +GLR ++ ++L ++ Sbjct: 123 DLLDCPNPLDPIELRDKAMLELLYATGLRVTELISLTTENLSLRQGVVRIIGKGDKERLV 182 Query: 230 ----GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-- 283 ++ + + + + F + Q M F K A AG++ Sbjct: 183 PLGEEASYWIQEFFQYGRGILLNNEPSSIVFPSKRGQMMTRQTFWHRIKHYAVLAGIDSE 242 Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 S H +R AT + GA + G + + YT A + RL Sbjct: 243 KLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVA-KARL 290 >gi|153839359|ref|ZP_01992026.1| tyrosine recombinase XerD [Vibrio parahaemolyticus AQ3810] gi|149747107|gb|EDM58095.1| tyrosine recombinase XerD [Vibrio parahaemolyticus AQ3810] gi|328472047|gb|EGF42924.1| site-specific tyrosine recombinase XerD [Vibrio parahaemolyticus 10329] Length = 305 Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 41/281 (14%), Positives = 97/281 (34%), Gaps = 24/281 (8%) Query: 73 WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVE---SR 126 L+ ++ + L+ N+ S+ + +++ + I+ ++ Sbjct: 13 ALVEQFLDAMWMERGLSENTLASYRNDLMKLLTWMEHHRYRLDFISLSGLQEYQTYLVDL 72 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + +S + L+++R LF++ R++ A +P + PK + ++E + Sbjct: 73 DYKQTSRARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPQRLPKDISEEQVDALLDAP 132 Query: 187 SEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGF 241 + + E L +GLR ++ ++++ ++ G V + + Sbjct: 133 DPNDPVELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVTGKGGKERLVPMGENA 192 Query: 242 MKLLAMTPIGKET----------FFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 + + F + ++M F K A AG++ S H Sbjct: 193 IDWIETFIQQGRPALLGETSSDVVFPSKRARQMTRQTFWHRIKYYAVIAGIDTDQLSPHV 252 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R AT + GA + G + + YT A Sbjct: 253 LRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER 293 >gi|206889353|ref|YP_002249196.1| tyrosine recombinase XerC [Thermodesulfovibrio yellowstonii DSM 11347] gi|254799359|sp|B5YFZ8|XERC_THEYD RecName: Full=Tyrosine recombinase xerC gi|206741291|gb|ACI20348.1| tyrosine recombinase XerC [Thermodesulfovibrio yellowstonii DSM 11347] Length = 301 Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 46/282 (16%), Positives = 95/282 (33%), Gaps = 26/282 (9%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES---RKHT 129 I+ + + ++ ++++ ++ + K+ IR + + + Sbjct: 7 YITNFLNHIKLQKGDSSHTLRAYKNDLEEFFN-FAKVEPEKVEPIVIRGFISEQILKGKS 65 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 ++ + L+++R F + + ++ INP V K K + T +D + SE Sbjct: 66 KTTVARKLSTLRSFFSYLYSEGFIKINPARVVSSVKIKRALPKFLTVDDAFKLVEAPSED 125 Query: 190 ----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKL 244 + + E SG+R S+ C ++ L K V + + Sbjct: 126 KFTVQRDKAILELFYSSGIRVSELCGLNLEDLDLKEGLIKVRGKGKKERIVPVGQKAKEA 185 Query: 245 LAMTPIGKE-------------TFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289 L ++ FINN Q+++ Q + A GV H + Sbjct: 186 LKKYLAIRQILRIKKKLSLDETPLFINNRGQRISDRQVRRIVEKYAKFIGVLEKIGPHTL 245 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 R A+ GA + G ++ + YT D L Sbjct: 246 RHTFASHLLMEGADLRVIQELLGHASLSTTQIYTH-VDLKHL 286 >gi|126663469|ref|ZP_01734466.1| site-specific recombinase [Flavobacteria bacterium BAL38] gi|126624417|gb|EAZ95108.1| site-specific recombinase [Flavobacteria bacterium BAL38] Length = 299 Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 51/304 (16%), Positives = 99/304 (32%), Gaps = 34/304 (11%) Query: 70 TLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR----KITTKHIRSGVE 124 T + I EY+ L+ N+ ++ ++++ D + I+ + I+ + Sbjct: 3 TWQSYIKEYQNYLRLERGLSKNTIENYTFDIEKLVVFLNTHDIQVSPIHISEETIQQFIY 62 Query: 125 SRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 S + ++ ++ F + V ++Y P +E PK + E++ Sbjct: 63 EIASKVNARSQSRLISGLKSFFNYLVFEDYRKDTPLELIEVPKTGRKLPDTLATEEIDAL 122 Query: 183 KSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVEL 237 + EG + R E L GLR S+ + L IK V + Sbjct: 123 IAAIDLSTPEGERNRAMLETLYSCGLRVSELVGLKISDLFFEEGFIKITGKGNKQRFVPV 182 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQ-----------KMNATQFSIWFKAKATKAGVNKS- 285 +K + + ++ K A K +NK+ Sbjct: 183 GGSTIKYITSYMNLIRVHYTVQKGHEDTLFLNRRGKQLTRAMVFTIIKDLAVKINLNKTI 242 Query: 286 -AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 H R AT + GA + G +++ E Y DR +S V++ Sbjct: 243 SPHTFRHSFATHLLENGADLRSIQLMLGHESITTTEVYMH-LDRK--------FLSEVLN 293 Query: 345 SDDP 348 + P Sbjct: 294 NYHP 297 >gi|146279751|ref|YP_001169909.1| hypothetical protein Rsph17025_3738 [Rhodobacter sphaeroides ATCC 17025] gi|145557992|gb|ABP72604.1| hypothetical protein Rsph17025_3738 [Rhodobacter sphaeroides ATCC 17025] Length = 384 Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 50/350 (14%), Positives = 104/350 (29%), Gaps = 21/350 (6%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRR---IRLPYPHESTFIPAYMSAL-----TGSTPKREY 60 P G+ Y + GRR I L T A A+ + Sbjct: 27 PGFGLRVLPSGRKGYVVQYRAGRRSRRISLGPTTVLTCEQARTRAITIVAAARNGQDPAA 86 Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHI 119 +K T+K L + K L ++ + + + G IT + Sbjct: 87 ERDAGRKAITIKELAERFDKEHIAIRLKASTGKEYRRNLQRFILPALGQLTVTGITRADV 146 Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW----- 174 +H P A + L + +F + K E + Sbjct: 147 AKFHHDLRHIPYQANRCLEVISKMFSLSEMWGLRPDGTNPRKHIRKYPEEKRERFLSAAE 206 Query: 175 ---TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 E +++ ++ E LA L+ +G R ++ ++ ++ +++ + T Sbjct: 207 LRRIGEVLREMEAEGVELPSAILAARLLILTGCRLNEIISLKWSYVDFDVPALRLPDSKT 266 Query: 232 IITVELPDGFM-KLLAMTPIGKETFFINNDKQKMNA-TQFSIWFKAKATKAGV-NKSAHG 288 V + +LL ++ + +++ +AGV + H Sbjct: 267 GAKVVHVGQPVVELLRDAQRIDGNPWVIAGTLPGKPLSDLQPFWQRVRARAGVKDVRIHD 326 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSR 337 +R A+ + +G + G V Y A+ +R+ Sbjct: 327 LRHTFASTAVASGQGLPMIGKLLGHTQVQTTARYAHLAAEPVRMAADAVA 376 >gi|213969060|ref|ZP_03397199.1| integrase/recombinase XerD [Pseudomonas syringae pv. tomato T1] gi|301384045|ref|ZP_07232463.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. tomato Max13] gi|302058751|ref|ZP_07250292.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. tomato K40] gi|302131712|ref|ZP_07257702.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213926058|gb|EEB59614.1| integrase/recombinase XerD [Pseudomonas syringae pv. tomato T1] Length = 298 Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 52/291 (17%), Positives = 107/291 (36%), Gaps = 24/291 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR---K 127 LI ++ + L+ N+R S+ S + D + I + R Sbjct: 8 LIDQFLDALWLEKGLSDNTRDSYRSDLALFNGWLQERNVDLPGAGREVILDHLAWRVENA 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 + P S +FL+ R +++ +R++ ++++P L ++ P+ + ++ D++ + Sbjct: 68 YKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADVEALLAAPD 127 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 G + R E L GLR ++ ++ + ++ V + + + Sbjct: 128 LSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEEAI 187 Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290 + G F + +M F K +AT AG+ KS H +R Sbjct: 188 VWVERYMRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGIGKSLSPHTLR 247 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 AT + GA + G + + YT A R RL +++ Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQEMHAKHHPR 297 >gi|239947482|ref|ZP_04699235.1| tyrosine recombinase XerD [Rickettsia endosymbiont of Ixodes scapularis] gi|239921758|gb|EER21782.1| tyrosine recombinase XerD [Rickettsia endosymbiont of Ixodes scapularis] Length = 306 Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 48/287 (16%), Positives = 102/287 (35%), Gaps = 35/287 (12%) Query: 73 WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRK--ITTKHIRSGVESRKH- 128 IS++ + +L+ NS +S++ + ITT+++R +E Sbjct: 2 EFISQFLEMLLAERALSKNSILSYKRDLFDFQNYLAKQKLSELNITTENVRDWIEYLATN 61 Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 S + +++++ +++ + + ++A NP L+V+ PK + + + + ++ Sbjct: 62 DLQARSINRKISTIKSYYEFLISENHIAFNPVLNVDLPKYQNKLPEILSIDQIKSLLEHC 121 Query: 187 -----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--------QNNIFSIKTQKTGTII 233 EG + L SGLR S+ + + + K Sbjct: 122 SQDNSPEGIRLNAMIHLLYASGLRVSELVSLKLADILTNKTSKGEVRKIFSVLGKGNKER 181 Query: 234 TVELPDG----FMKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWFKAKATKA 280 + + + K LA+ + N M F+I K+ A A Sbjct: 182 VIVINEQAVISIAKYLAIRDVFVNKAKPKNLIYLFPSSALAGYMTRQNFAILLKSAALYA 241 Query: 281 GV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 G+ + S H +R A+ + GA + G + + YT Sbjct: 242 GLNPEHISPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTH 288 >gi|149276499|ref|ZP_01882643.1| site-specific recombinase [Pedobacter sp. BAL39] gi|149233019|gb|EDM38394.1| site-specific recombinase [Pedobacter sp. BAL39] Length = 292 Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 50/272 (18%), Positives = 96/272 (35%), Gaps = 27/272 (9%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHI---RSGVESRKHTP 130 Y K L+VNS ++ S ++ +D +++ T + S V P Sbjct: 6 YLKLERA--LSVNSISAYISDVKKLFEYFDSTGKSYDIQEVNTSDLKLFISWVNELGMLP 63 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS--- 187 + + ++ ++ F + ++ ++ +P S+E P+ + E++ Sbjct: 64 VTQARVISGIKSYFSFLSLEQLISSDPASSLETPRLNKKLPDTLNIEEINAMIQAIDHSK 123 Query: 188 -EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLL 245 EG + R E L GLR S+ + + ++ N F K + + +K + Sbjct: 124 AEGLRSRAMLEVLYGCGLRVSELIQMKISNIFINSEFIKVVGKGDKERIIPIGSAALKYI 183 Query: 246 AMTPI-----------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292 M ++ F+N + K A AG+ K S H R Sbjct: 184 MMYINEVRIEVPIKKGQEDFVFLNRRGTALTRMLIFNMIKGLAKDAGIQKNISPHTFRHS 243 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324 AT + GA + G ++ E YT Sbjct: 244 FATHLIEGGADLRAVQEMLGHSSITTTEIYTH 275 >gi|326566125|gb|EGE16282.1| tyrosine recombinase XerD [Moraxella catarrhalis BC1] Length = 307 Score = 136 bits (343), Expect = 4e-30, Method: Composition-based stats. Identities = 52/274 (18%), Positives = 95/274 (34%), Gaps = 21/274 (7%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---T 129 +SE+R + L++ +R ++ ++ + D +R+ + K + Sbjct: 20 EYLSEFRAAMLARGLSIATRNAYSQDV-RLCIRLSDMPVNLWQPSDVRNHLMCLKDAKKS 78 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE- 188 S + L S+ F W + Y NPC S++ PK + +++++ Sbjct: 79 ERSIARALASLCQFFLWQIESGYREDNPCESIKTPKLGKTLPKTLSEQEVSSLLDAPDIS 138 Query: 189 ---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKL 244 G + + E L GLR S+ ++HL T K + + L + + Sbjct: 139 SVRGLRDKAMLEVLYACGLRVSELTSLSLEHLNLTAGWLSVTGKGNKMRLIPLGEYALSA 198 Query: 245 LAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKF 292 L + F+ M F K A AG+N S H +R Sbjct: 199 LNEYLAVRGSLLIGKKDCQAVFLTEQGGYMTRHNFWHLIKKYALMAGINTAISPHTLRHA 258 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA 326 AT + GA + G + + YT A Sbjct: 259 FATHLVNHGADLRSVQLLLGHSDLSTTQIYTHVA 292 >gi|81428597|ref|YP_395597.1| site-specific DNA-tyrosine recombinase, XerC [Lactobacillus sakei subsp. sakei 23K] gi|78610239|emb|CAI55288.1| Site-specific DNA-tyrosine recombinase, XerC [Lactobacillus sakei subsp. sakei 23K] Length = 303 Score = 136 bits (343), Expect = 4e-30, Method: Composition-based stats. Identities = 36/282 (12%), Positives = 99/282 (35%), Gaps = 31/282 (10%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD-------FDYRKITTKHIRSGVE 124 I+ + + + ++ ++++ + + + + ++ Sbjct: 6 DWINLFLQYLIVDRHYSPETQKAYQADIKAFVDFLAANGGLTSFKQVGTLEVQTYLNEMD 65 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 +K++ + + ++S+R +++ +R E++ +P +V+ K++ + R + +++M + Sbjct: 66 QKKYSGETIARRISSLRSFYRYLIRNEFLQTDPFETVQLKKQRHKLPRFFYEKEMDALFA 125 Query: 185 FW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD 239 + R E L +G+R S+ + + + + I K V + Sbjct: 126 AIVGQEPLTQRNRAILELLYATGMRVSECAQLTIGQIDFGLRVILVHGKGNKDRYVPFGN 185 Query: 240 GFMKLLAMT------------PIGKETFFINNDKQKMNATQFSIWF----KAKATKAGVN 283 K L + F+N+ + + K +G++ Sbjct: 186 HATKALQDYLNDGRVQLMAKRQQEHDVVFVNHLGNPITSRGIEYALDQVDKKTCLTSGIH 245 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 H +R AT D GA + G ++ + YT Sbjct: 246 --PHMIRHTFATHLLDHGADLRTVQELLGHSSLSTTQIYTHV 285 >gi|1916335|gb|AAC45774.1| site-specific recombinase [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 298 Score = 136 bits (343), Expect = 4e-30, Method: Composition-based stats. Identities = 41/279 (14%), Positives = 92/279 (32%), Gaps = 24/279 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESRKH 128 I ++ + +LA N+ ++ ++ + + + + + Sbjct: 8 IEQFLDALWLERNLAENTLSAYRRDLSMVVAWLHHRGKTLATAQADDLQTLLAERVEGGY 67 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +++ + L++MR F+ R++Y +P + PK + ++ +++ Sbjct: 68 KATTSARLLSAMRRFFQHLYREKYREDDPSAQLASPKLPQRLPKDLSEAQVERLLQAPLI 127 Query: 189 G----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243 + + E L +GLR S+ + + ++ V L + + Sbjct: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187 Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290 L + F + Q+M F K A AG++ S H +R Sbjct: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + GA + G + + YT A Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286 >gi|300722127|ref|YP_003711410.1| site-specific tyrosine recombinase [Xenorhabdus nematophila ATCC 19061] gi|297628627|emb|CBJ89205.1| site-specific tyrosine recombinase [Xenorhabdus nematophila ATCC 19061] Length = 323 Score = 136 bits (343), Expect = 4e-30, Method: Composition-based stats. Identities = 45/280 (16%), Positives = 92/280 (32%), Gaps = 24/280 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYF----DQIIRKSGDFDYRK-ITTKHIRSGVESRK 127 LI ++ + LA N+ S+ + ++ D + I + + Sbjct: 32 LIEQFLDTIWLEKDLAENTLASYRLDLQALDNWLMNYGHDVLLVQVIELQSFLAERVDGG 91 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFK 183 + SS+ + L++MR LF++ R++ +P + PK + +++ + Sbjct: 92 YKASSSARLLSAMRRLFQYLYREKMREDDPTALLSAPKLPKRLPKDLSEKQVEDLLNTPL 151 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 + + + E L GLR S+ + + ++ V L + + Sbjct: 152 TDQPIELRDKAMLEVLYACGLRVSELVGLTLSDVSLRQGVVRVVGKGNKERLVPLGEEAV 211 Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289 L + F + +M F K A A ++ S H + Sbjct: 212 YWLEKYLEYGRPWLLNGAVSDVFFPSKRGTQMTRQTFWHRIKHYAILAEIDAERLSPHVL 271 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + GA + G + + YT A Sbjct: 272 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 311 >gi|294102502|ref|YP_003554360.1| integrase family protein [Aminobacterium colombiense DSM 12261] gi|293617482|gb|ADE57636.1| integrase family protein [Aminobacterium colombiense DSM 12261] Length = 297 Score = 136 bits (343), Expect = 4e-30, Method: Composition-based stats. Identities = 40/292 (13%), Positives = 98/292 (33%), Gaps = 17/292 (5%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSGV--- 123 L + + Y + + S+++ + ++ +Q + + ++ T+ IR + Sbjct: 7 LSFALDYYLEQMRFAKSMSMYTIENYAVDLNQFVNYLLEQNVTLLSEVDTRIIREYLRVL 66 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 S + SS + L++++ F + V ++ V +P +V+ P+ R + E + + Sbjct: 67 ASFGYARSSVARKLSAIKNWFAFLVDKKLVGKDPAKNVKGPRLPGRLPRALSVEQVSRLI 126 Query: 184 SFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELP 238 S + + E L GLR + + + ++ + + + Sbjct: 127 EVGCAKSADPLRDKAVLELLYGCGLRIGELVVLRWEDIDFAERWVRVRGKGNKERMIPVG 186 Query: 239 DGFMKLLAMTPIGKETFFINNDKQ---KMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294 +K L + + + A +AG+ + H +R A Sbjct: 187 KMAIKALYNWRDSCQMGIFLFTGEEGSHLTVRTVGRIVDRAAKRAGLSGVTPHMLRHSFA 246 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346 T + GA+ + G +++ + Y L D Sbjct: 247 THMLEGGASIRVVQELLGHESLITTQRYL-TVTAEHLKQSYIEAFPRTRGDD 297 >gi|317128498|ref|YP_004094780.1| tyrosine recombinase XerD [Bacillus cellulosilyticus DSM 2522] gi|315473446|gb|ADU30049.1| tyrosine recombinase XerD [Bacillus cellulosilyticus DSM 2522] Length = 296 Score = 136 bits (343), Expect = 4e-30, Method: Composition-based stats. Identities = 44/269 (16%), Positives = 98/269 (36%), Gaps = 24/269 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSG----DFDYRKITTKHIRSGVESRK---HTPSSAIQFL 137 L+ N+ ++ I+ D +I I + K P++ + + Sbjct: 16 RGLSKNTTEAYNRDLTAYIQYIESHENKKDVNEINRPAIMQYLYFLKDNGRAPTTITRNI 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPR 193 +S+R ++ +R+ + +P + + RPK++ + + + +++ S + + + Sbjct: 76 SSIRAFHQFLLRERLSSSDPTIHISRPKQEKKLPKILSTTEVEALISASVKNPALNIRNK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT---- 248 E L +G+R S+ C+ + L ++ I+ + + + K L Sbjct: 136 AMLEVLYATGIRVSELCQLSLSDLHLDMGFIRCIGKGNKERIIPIGNVATKALETYLQKS 195 Query: 249 ------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 F+N+ KM+ F K A +A + K + H +R AT + Sbjct: 196 RPTLLKKQAHSILFVNHHGNKMSRQGFWKIIKLLAKEANIKKELTPHTLRHSFATHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329 GA + G + + YT Sbjct: 256 GADLRAVQEMLGHVDISTTQIYTHITKTR 284 >gi|281421506|ref|ZP_06252505.1| integrase/recombinase XerD [Prevotella copri DSM 18205] gi|281404578|gb|EFB35258.1| integrase/recombinase XerD [Prevotella copri DSM 18205] Length = 318 Score = 136 bits (343), Expect = 4e-30, Method: Composition-based stats. Identities = 47/291 (16%), Positives = 101/291 (34%), Gaps = 25/291 (8%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHT 129 +I Y + + + N+ ++ + ++ + + ++ + + + S Sbjct: 4 EIIKNYMRYLKLGRNFSKNTLDAYYHDLNFLLEYADKNNLVLTEMKLEDLENFSASLHDR 63 Query: 130 PSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 SA + L+ +R +++ V +Y+ +P + P+ + E++ ++ Sbjct: 64 GVSARSQARILSGIRSFYRYLVLDDYIKDDPTELLVSPQIGKHLPEYLSVEEVDMLEAAI 123 Query: 187 ----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 EG + + E L GLR S+ + I+ V + Sbjct: 124 DLEKWEGQRNKAIIEILFSCGLRVSELVNLKKSDVFEEEKFIRVIGKGNKERIVPISGKA 183 Query: 242 MKLLAMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289 +K + + I + I N + I K A AG+ K+ H + Sbjct: 184 LKEINLWYIDRNLMTIKPGEEDYVFLNRRGAHLTRNMILIMIKNAAYDAGIKKTISPHTL 243 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK--GADRIRLGIKNSRR 338 R AT GA + A G + + E YT +D R +++ R Sbjct: 244 RHSFATALLKGGADLRVIQALLGHEDIGTTEIYTHLETSDLRRAILEHHPR 294 >gi|222474757|ref|YP_002563172.1| Tyrosine recombinase (xerD) [Anaplasma marginale str. Florida] gi|255003855|ref|ZP_05278656.1| Tyrosine recombinase (xerD) [Anaplasma marginale str. Virginia] gi|222418893|gb|ACM48916.1| Tyrosine recombinase (xerD) [Anaplasma marginale str. Florida] Length = 312 Score = 136 bits (343), Expect = 4e-30, Method: Composition-based stats. Identities = 44/295 (14%), Positives = 105/295 (35%), Gaps = 35/295 (11%) Query: 75 ISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRKH 128 + + +S ++ N+ S+ S + + G + R + + + SR + Sbjct: 7 LDAFLESLLSGRCVSPNTSSSYRSDLENLAEFLGRRNLRMVDASAADLRAYVRSLNSRGY 66 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--- 185 +P++ + ++++R L+ + + +P +++ K + T +++ + Sbjct: 67 SPATVARRISAIRGLYGFLYGDRIIDGDPAANLDSCKLGRPLPKVLTVDEVDKLLCAAGS 126 Query: 186 --WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG------------- 230 EG + L SG+R S+ G +++ + ++ Sbjct: 127 DLSVEGRRTAAIVNILYSSGVRISELINLGFYDIESMLKEQRSDVGHLVIKGKAGRERLI 186 Query: 231 -------TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 I L ++ + F Q ++ + KA A AGV+ Sbjct: 187 LLNEVAIASIVAYLAVRDHFIVGQKSESRWLFPGAKFDQCISRQRVGQLLKALAIVAGVD 246 Query: 284 ---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIK 334 S H +R AT + G+ + G ++ + YT A DR++ ++ Sbjct: 247 PKRISPHKLRHSFATHLLNNGSNVVFIQKMLGHASLSTTQIYTYVANDRLKEALQ 301 >gi|237746874|ref|ZP_04577354.1| tyrosine recombinase XerD [Oxalobacter formigenes HOxBLS] gi|229378225|gb|EEO28316.1| tyrosine recombinase XerD [Oxalobacter formigenes HOxBLS] Length = 303 Score = 136 bits (343), Expect = 4e-30, Method: Composition-based stats. Identities = 44/288 (15%), Positives = 92/288 (31%), Gaps = 24/288 (8%) Query: 74 LISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRKH 128 I E+ ++ L+ N+ ++ + ++T + S +R Sbjct: 2 AIDEFCETVWLEDGLSQNTLDAYRRDMQLFAQWLEKNGPGTRLLEVTPDILNSYFLARHS 61 Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 +SA + LT ++ ++ R +A+NPC + K+ ++ ++ Sbjct: 62 ESKATSANRRLTVLKRFYRLQFRLGRLAVNPCQKMHAAKQPARFPGTLSETQVESLLIAP 121 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----------IFSIKTQKTGT 231 G + R E + SGLR S+ + + N + Sbjct: 122 RVENPLGLRDRTMIELMYASGLRVSELVTLKLVEVGMNEGVLRILGKGSKTRLVPFGEEA 181 Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289 I +E + + + F+ M F + A ++G+ S H + Sbjct: 182 RIWIERYMRESRPFILAGKVSDYLFVTARGTSMTRQMFWTLIRKYALQSGIHEPLSPHTL 241 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 R AT + GA + G + + YT A + + Sbjct: 242 RHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVAQQRLKQLHAIH 289 >gi|95929136|ref|ZP_01311880.1| Tyrosine recombinase XerD [Desulfuromonas acetoxidans DSM 684] gi|95134634|gb|EAT16289.1| Tyrosine recombinase XerD [Desulfuromonas acetoxidans DSM 684] Length = 298 Score = 136 bits (343), Expect = 4e-30, Method: Composition-based stats. Identities = 44/265 (16%), Positives = 81/265 (30%), Gaps = 24/265 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRKHTP---SSAIQFLT 138 L+ N+ S+ + I + I + K S + L Sbjct: 18 RGLSANTLESYARDLQRYIGFLEERHINDVIAIRQNDVLDFFTELKEQGMGVRSRARLLA 77 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194 ++R +AV + +A NP + PK + D+ +G + Sbjct: 78 ALRGFHHYAVDEYQLANNPVARLTTPKMLQTLPDTLSPADVDALLDINDDGQALTRRDIA 137 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF------------M 242 E L +G+R S+ + L N ++ G+ + Sbjct: 138 MLELLYATGMRVSELVGLKLDDLHLNSGYLRVFGKGSKQRIIPIGEIAIDTLRDYLARVR 197 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 L F+N + + F K +A +AG+ K + H +R AT + Sbjct: 198 PELDRQRNLSPCVFLNRSGKGLTRQGFWKMIKRRALEAGITKNVTPHTLRHSFATHLLEN 257 Query: 301 GATAHELMATYGWKTVDQAETYTKG 325 GA + G + + YT Sbjct: 258 GADLRVVQMLLGHVDISTTQIYTHV 282 >gi|323141913|ref|ZP_08076774.1| tyrosine recombinase XerD [Phascolarctobacterium sp. YIT 12067] gi|322413660|gb|EFY04518.1| tyrosine recombinase XerD [Phascolarctobacterium sp. YIT 12067] Length = 297 Score = 136 bits (343), Expect = 4e-30, Method: Composition-based stats. Identities = 45/284 (15%), Positives = 101/284 (35%), Gaps = 28/284 (9%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHT 129 L EY LA N+++++ +++ D + +++ + + + + K Sbjct: 6 ALFQEYLT--VELGLAKNTQLAYMRDLRLLMKSLQLKADEELLQVSRQQLIAYLVRLKQE 63 Query: 130 PSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 +A + L S++ +++ + Y+ NP +E R + + +++++ Sbjct: 64 GRAASTVARKLASIKAFYRFLTAERYIRRNPAEVLEAASRGLHLPKVLSVQEVERLLDEP 123 Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGF 241 + G+ + + E L +G+R S+ V+++ + I K + L Sbjct: 124 NLGTLDGYRDKTMLELLYATGMRVSELVNVPVKNVDMKMQYVIVMGKGSKERMLPLGRTA 183 Query: 242 MKLLAMTPIGKETF------------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287 + L F+ M +F A AG++K + H Sbjct: 184 LHYLEHYLSVVRPQLLHGKPDTAAELFVTGWGGPMTRERFYEIIVAYGKSAGISKRVTPH 243 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +R AT + G + G + + YT D RL Sbjct: 244 MLRHSFATHLLNNGTDLRIVQELLGHADISTTQIYTH-LDVERL 286 >gi|56420850|ref|YP_148168.1| site-specific tyrosine recombinase XerD [Geobacillus kaustophilus HTA426] gi|56380692|dbj|BAD76600.1| integrase/recombinase [Geobacillus kaustophilus HTA426] Length = 298 Score = 136 bits (343), Expect = 4e-30, Method: Composition-based stats. Identities = 43/271 (15%), Positives = 100/271 (36%), Gaps = 26/271 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGVESRKHTPSSAIQFL 137 +LA N+ +S+E + +R + ++ H + + + + + L Sbjct: 16 RNLAHNTIVSYERDLKKYVRYLRQVEQLQAWGEVERLHILHFLKFLSEQGQSARTIARHL 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193 S+R ++ +R++ A +P + +E P+ + + + E+++ + G + + Sbjct: 76 ASIRSFHQFLLREKIAAQDPTVHIETPQFERTLPKVLSVEEVEALLAAPQVSTPFGLRDK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252 E L +G+R S+ + + + + ++ V + ++ LA Sbjct: 136 AMLELLYATGMRVSELVQLNLSDVHLTMGFVRCYGKGRKERIVPIGRMAIEALAHYLERG 195 Query: 253 ETF------------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298 F+N+ Q++ F K A +AG+ K + H +R AT Sbjct: 196 RPQLVNPRRRATEALFLNHYGQRLTRQGFWKILKRLAKEAGIEKELTPHTLRHSFATHLL 255 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRI 329 + GA + G + + YT Sbjct: 256 ENGADLRAVQELLGHADISTTQMYTHVTKTR 286 >gi|294139500|ref|YP_003555478.1| integrase/recombinase XerD [Shewanella violacea DSS12] gi|293325969|dbj|BAJ00700.1| integrase/recombinase XerD [Shewanella violacea DSS12] Length = 305 Score = 136 bits (343), Expect = 4e-30, Method: Composition-based stats. Identities = 45/300 (15%), Positives = 99/300 (33%), Gaps = 36/300 (12%) Query: 74 LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTP 130 LI + L+ N+ ++ + R + + +++ + IR ++ R Sbjct: 15 LIDIFLDDLWSNRGLSDNTLAAYRTDLRHFDRYIQELGAELVQVSQELIRGYLDVRFDKG 74 Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS--- 184 +S+ + ++S+R F + + ++ + +P ++ PK + ++ D+ + Sbjct: 75 FARTSSARMMSSLRRFFGFLLLKKMITADPIARIKSPKLARKLPDSLSEADVDILLNEPD 134 Query: 185 -FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-------------G 230 + R E L +GLR ++ ++ L ++ Sbjct: 135 IQDPIECRDRAMLELLYATGLRVTELVSLTMEQLSLRQGLVRVVGKGGKERLVPLGELAV 194 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHG 288 + + L +LL F K A +AG+ + S H Sbjct: 195 SEVENYLQGARAELLKGKLSDVLFPSKRGQMMA--RQTFWYRIKLYALRAGIVTHISPHT 252 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 +R AT + GA + G + + YT A R+S + P Sbjct: 253 LRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAK---------ARLSQLHSEHHP 303 >gi|117921769|ref|YP_870961.1| tyrosine recombinase XerD [Shewanella sp. ANA-3] gi|117614101|gb|ABK49555.1| tyrosine recombinase XerD [Shewanella sp. ANA-3] Length = 300 Score = 136 bits (343), Expect = 4e-30, Method: Composition-based stats. Identities = 45/281 (16%), Positives = 99/281 (35%), Gaps = 24/281 (8%) Query: 74 LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR---K 127 LI + L+ N+ ++ + R ++ +R+ + R + Sbjct: 10 LIDAFLDDLWSSKGLSDNTLSAYRTDLRHFDRYQQGQGLRLIEVGQADVRAYLAYRVEQQ 69 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +S+ + L+S+R + + ++ + +A +P +E PK + ++ + + + + Sbjct: 70 FARTSSARLLSSLRRFYTYLLQTKQIAGDPMALIESPKLSRQLPDSLSESQVDRLLAEPN 129 Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVEL----P 238 + + E L +GLR S+ ++ + ++ G V + Sbjct: 130 VDDPVECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVRIVGKGGKERLVPMGELAI 189 Query: 239 DGFMKLLAMTPIGKETFFINNDKQK------MNATQFSIWFKAKATKAGVN--KSAHGVR 290 + L+ ++ M F K A++AG+ S H +R Sbjct: 190 TEVERYLSFARYELLGNIQSDVVFPSKRAQMMTRQTFWHRIKLYASRAGIETELSPHTLR 249 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 AT + GA + G + + YT A R RL Sbjct: 250 HAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVA-RARL 289 >gi|300024678|ref|YP_003757289.1| tyrosine recombinase XerD [Hyphomicrobium denitrificans ATCC 51888] gi|299526499|gb|ADJ24968.1| tyrosine recombinase XerD [Hyphomicrobium denitrificans ATCC 51888] Length = 309 Score = 136 bits (343), Expect = 4e-30, Method: Composition-based stats. Identities = 39/277 (14%), Positives = 88/277 (31%), Gaps = 28/277 (10%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESR---KHTPSSAIQFLTS 139 + N+ ++ + + D + T++I+ + + P+S + L++ Sbjct: 22 RGASPNTIEAYRGDLEGFLDYLSDGSVAPLSVGTQNIQGYIAAMANAGQAPTSRSRRLSA 81 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK------------SFWS 187 ++ +++ + + +P ++ PK++ + + ++ + Sbjct: 82 IKQYYRFLFAEGLIGADPTSGLQGPKKQRSLPKVLSIAEVDRLLDASQKRCEGVEGRAMF 141 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLA 246 + E L +G+R S+ L+ + K G V L L Sbjct: 142 RALRFHCLLELLYATGMRVSELVGLPRTVLRGDKRVFSIKGKGGRERLVPLNAEARAALD 201 Query: 247 MTPIGKETFFINNDKQK-------MNATQFSIWFKAKATKAGV---NKSAHGVRKFSATI 296 F + M +F+ K A +AG+ S H +R A+ Sbjct: 202 RFLEVSGRFDNSPWLFPSKSASGHMTRQRFAQDLKDVAAEAGIGGDRISPHVLRHAFASH 261 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 D GA + G + E YT + Sbjct: 262 LLDRGADLRTVQQLLGHADISTTEIYTHVLQERLKAL 298 >gi|330985052|gb|EGH83155.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. lachrymans str. M301315] Length = 298 Score = 136 bits (343), Expect = 4e-30, Method: Composition-based stats. Identities = 52/281 (18%), Positives = 103/281 (36%), Gaps = 24/281 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR---K 127 LI + + L+ N+R S+ S + D + I + R Sbjct: 8 LIDRFLDALWLEKGLSDNTRDSYRSDLALFNGWLQERNVDLPSAGREVILDHLAWRVENA 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 + P S +FL+ R +++ +R++ ++++P L ++ P+ + ++ D++ + Sbjct: 68 YKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADVEALLAAPD 127 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 G + R E L GLR ++ ++ + ++ V + + + Sbjct: 128 LSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEEAI 187 Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290 + G F + +M F K +AT AG+ KS H +R Sbjct: 188 VWVERYLRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGIGKSLSPHTLR 247 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 AT + GA + G + + YT A R RL Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARL 287 >gi|330959145|gb|EGH59405.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. maculicola str. ES4326] Length = 298 Score = 136 bits (343), Expect = 4e-30, Method: Composition-based stats. Identities = 54/291 (18%), Positives = 107/291 (36%), Gaps = 24/291 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR---K 127 LI ++ + L+ N+R S+ S + D + I + R Sbjct: 8 LIDQFLDALWLEKGLSDNTRDSYRSDLALFNGWLQERNVDLPSAGREVILDHLAWRVDNA 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 + P S +FL+ R +++ +R++ +AI+P L ++ P+ + ++ D++ + Sbjct: 68 YKPRSTARFLSGARGFYRYLLREKLIAIDPTLQIDMPQLGKPLPKSLSEADVEALLAAPD 127 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 G + R E L GLR ++ ++ + ++ V + + + Sbjct: 128 LSEPIGQRDRAVLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEEAI 187 Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290 + G F + +M F K +AT AG+ KS H +R Sbjct: 188 VWVERYLRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGIGKSLSPHTLR 247 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 AT + GA + G + + YT A R RL +++ Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQEIHAKHHPR 297 >gi|168242831|ref|ZP_02667763.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194449828|ref|YP_002047028.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194408132|gb|ACF68351.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205338181|gb|EDZ24945.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 298 Score = 136 bits (343), Expect = 4e-30, Method: Composition-based stats. Identities = 42/279 (15%), Positives = 92/279 (32%), Gaps = 24/279 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESRKH 128 I ++ + +LA N+ ++ ++ + + + + + Sbjct: 8 IEQFLDALWLERNLAENTLSAYRRDLSMVVAWLHHRGKTLATAQADDLQTLLAERVEGGY 67 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +S+ + L++MR F+ R++Y +P + PK + ++ +++ Sbjct: 68 KATSSARLLSAMRRFFQHLYREKYREDDPSAQLASPKLPQRLPKDLSEAQVERLLQAPLI 127 Query: 189 G----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243 + + E L +GLR S+ + + ++ V L + + Sbjct: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGMVRVIGKGNKERLVPLGEEAVY 187 Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290 L + F + Q+M F K A AG++ S H +R Sbjct: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + GA + G + + YT A Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286 >gi|157803898|ref|YP_001492447.1| site-specific tyrosine recombinase XerD [Rickettsia canadensis str. McKiel] gi|157785161|gb|ABV73662.1| tyrosine recombinase [Rickettsia canadensis str. McKiel] Length = 308 Score = 136 bits (343), Expect = 4e-30, Method: Composition-based stats. Identities = 49/286 (17%), Positives = 103/286 (36%), Gaps = 34/286 (11%) Query: 73 WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRK--ITTKHIRSGVESRKH- 128 IS++ + +L+ NS S++ + ITT++IR+ +E Sbjct: 2 EFISQFLEMLLAERALSKNSIFSYKRDLFDFQNYLAKQKLSELNITTENIRNWIEYLADN 61 Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-----QQ 181 S + +++++ +++ + + + A NP L+V+ PK +++ + + + Sbjct: 62 DLQARSINRKISTIKSYYEFLISENHTAFNPVLNVDLPKYQSKLPEILSIDQIKSLLEYC 121 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-------SIKTQKTGTIIT 234 + EG + L SGLR S+ + + N K Sbjct: 122 SQDATPEGIRLNAMIHLLYASGLRVSELVSLKLADILTNKMSGEVKKVFSVLGKGNKERV 181 Query: 235 VELPDG----FMKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWFKAKATKAG 281 + + + +K LA+ + N M F++ K+ A AG Sbjct: 182 IIINEQAVISIVKYLAIRDVFLNKAKPKNLIYLFPSSAIAGYMTRQNFAMLLKSAALYAG 241 Query: 282 V---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + + S H +R A+ + GA + G + + YT Sbjct: 242 LNPKHISPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTH 287 >gi|330872807|gb|EGH06956.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 298 Score = 136 bits (343), Expect = 4e-30, Method: Composition-based stats. Identities = 53/291 (18%), Positives = 106/291 (36%), Gaps = 24/291 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR---K 127 LI + + L+ N+R S+ S + D + I + R Sbjct: 8 LIDRFLDALWLEKGLSDNTRDSYRSDLALFNGWLQERNVDLPSAGREVILDHLAWRVDNA 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 + P S +FL+ R +++ +R++ +A++P L ++ P+ + ++ D++ + Sbjct: 68 YKPRSTARFLSGARGFYRYLLREKLIAVDPTLQIDMPQLGKPLPKSLSEADVEALLAAPD 127 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 G + R E L GLR ++ ++ + ++ V + + + Sbjct: 128 LSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEEAI 187 Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290 + G F + +M F K +AT AG+ KS H +R Sbjct: 188 VWVERYMRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGIGKSLSPHTLR 247 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 AT + GA + G + + YT A R RL +++ Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQEMHAKHHPR 297 >gi|182416388|ref|YP_001821454.1| tyrosine recombinase XerD [Opitutus terrae PB90-1] gi|177843602|gb|ACB77854.1| tyrosine recombinase XerD [Opitutus terrae PB90-1] Length = 317 Score = 136 bits (343), Expect = 4e-30, Method: Composition-based stats. Identities = 57/301 (18%), Positives = 105/301 (34%), Gaps = 24/301 (7%) Query: 55 TPKREYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFD 110 R + P I + LA N+ S+ DQ G D Sbjct: 2 KAPRARAQDTSQAPPAFADDIEAFLGYIALERGLAANTVASYRRDLDQAATHLAAQGARD 61 Query: 111 YRKITTKHIRSGVESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167 +R +T + + S +T +S + L+++R L + VR+ + A + + PK Sbjct: 62 WRAVTGEQAAGWIHSLSSASYTVASLARKLSALRSLAHFLVRERFRADDFTALLSGPKAS 121 Query: 168 TEGIRPWTKEDMQQFKSFWSEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223 T+E++ + + + G + R E SGLR S+ +Q + Sbjct: 122 RRIPGTLTEEEIARLLAAPTGGDARALRDRALLELFYSSGLRVSELAGLLLQQVDLEHGF 181 Query: 224 IKTQKTG-TIITVELPDGFMKLLAMTPIGKETFFI----------NNDKQKMNATQFSIW 272 ++ G V + ++ LA F+ N + ++ + Sbjct: 182 LRVFGKGAKERVVPIGGKAIEALATYLTAGRPHFVRSRTGSQLFLNKNGGPLSRVMLWML 241 Query: 273 FKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 K A +AG+ K+ HG+R AT GA + G ++ + YT + Sbjct: 242 VKKYAKRAGLTKNVKPHGLRHSFATHLLSGGADLRAIQEMLGHASISTTQIYTSVESQRL 301 Query: 331 L 331 L Sbjct: 302 L 302 >gi|319954373|ref|YP_004165640.1| tyrosine recombinase xerc [Cellulophaga algicola DSM 14237] gi|319423033|gb|ADV50142.1| Tyrosine recombinase xerC [Cellulophaga algicola DSM 14237] Length = 298 Score = 136 bits (343), Expect = 4e-30, Method: Composition-based stats. Identities = 44/284 (15%), Positives = 94/284 (33%), Gaps = 26/284 (9%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR----KITTKHIRSGVESRKH 128 +++Y+ L+ NS S+ +++ +I ++ + Sbjct: 6 ALNDYQNYLKIERGLSENSISSYSLDIQKLLLFLETNKIVTSPIQIDKHIVQQFIYEISK 65 Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 P S + ++ ++ F + V ++Y NP +E PK + +++++ + Sbjct: 66 DVNPRSQARIISGLKSFFNYLVFEDYRIDNPLELIESPKTGRKLPDTLSEDEINDLIAAI 125 Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN------------NIFSIKTQKTG 230 + EG + R E L G+R S+ + L + Sbjct: 126 NLSTPEGERNRAILETLYGCGVRVSELINLKISDLFFEEDFIKVTGKGDKQRFVPISDIN 185 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHG 288 + L + ++ F+N +++ K A K + K+ H Sbjct: 186 KKYINLYKNEIRVHLNIQKGFEDILFLNRRGRQLTRAMIFTIIKQLAIKIDLKKTISPHT 245 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 R AT + GA + G +++ E Y DR L Sbjct: 246 FRHSFATHLLENGADLRAIQQMLGHESITTTEVYMH-VDRSHLA 288 >gi|268591702|ref|ZP_06125923.1| tyrosine recombinase XerD [Providencia rettgeri DSM 1131] gi|291312661|gb|EFE53114.1| tyrosine recombinase XerD [Providencia rettgeri DSM 1131] Length = 300 Score = 136 bits (343), Expect = 4e-30, Method: Composition-based stats. Identities = 46/287 (16%), Positives = 97/287 (33%), Gaps = 25/287 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESRK 127 LI ++ + LA N+ S+ + + + + I + + Sbjct: 9 LIEQFLDTIWLEQDLAENTLASYRNDLQLLDKWLDAHQLHLESVQSIDLQSFFAERIDCG 68 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + +S+ + L++MR LF++ R++ +P + PK + +++ ++ + + Sbjct: 69 YKATSSARLLSAMRRLFQYLYREKIRLDDPSAVIAAPKIPQRLPKDLSEKQVEDLLNAPA 128 Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 + + E L GLR S+ + I+ + L + + Sbjct: 129 TEDALELRDKAMLEVLYACGLRVSELIGLTFSDISLRQGVIRVVGKGDKERLIPLGEEAI 188 Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289 L F + KM F K A A ++ S H + Sbjct: 189 YWLEKYIDEGRPDLLNGKTSDILFPSKRGTKMTRQTFWHRIKYYAVLAHIDSELLSPHVL 248 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKN 335 R AT + GA + G + + YT A +R+R+ + Sbjct: 249 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRVLHEQ 295 >gi|16761825|ref|NP_457442.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16766345|ref|NP_461960.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29143312|ref|NP_806654.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62181554|ref|YP_217971.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161615991|ref|YP_001589956.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167550072|ref|ZP_02343829.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167994107|ref|ZP_02575199.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168231149|ref|ZP_02656207.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168236103|ref|ZP_02661161.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168261794|ref|ZP_02683767.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168463788|ref|ZP_02697705.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194446221|ref|YP_002042295.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194470177|ref|ZP_03076161.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194471635|ref|ZP_03077619.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194738371|ref|YP_002115993.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197249597|ref|YP_002147956.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197265258|ref|ZP_03165332.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198244272|ref|YP_002217021.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200387943|ref|ZP_03214555.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205353968|ref|YP_002227769.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207858307|ref|YP_002244958.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213051988|ref|ZP_03344866.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213425823|ref|ZP_03358573.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213646964|ref|ZP_03377017.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213857737|ref|ZP_03384708.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|224584833|ref|YP_002638631.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238909843|ref|ZP_04653680.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|60416276|sp|P0A2P6|XERD_SALTY RecName: Full=Tyrosine recombinase xerD gi|60416277|sp|P0A2P7|XERD_SALTI RecName: Full=Tyrosine recombinase xerD gi|25299270|pir||AB0872 site-specific integrase/recombinase [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16421595|gb|AAL21919.1| site-specific recombinase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16504127|emb|CAD02874.1| site-specific integrase/recombinase [Salmonella enterica subsp. enterica serovar Typhi] gi|29138946|gb|AAO70514.1| site-specific integrase/recombinase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62129187|gb|AAX66890.1| recombinase, site-specific [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161365355|gb|ABX69123.1| hypothetical protein SPAB_03791 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194404884|gb|ACF65106.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194456541|gb|EDX45380.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194457999|gb|EDX46838.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194713873|gb|ACF93094.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195633587|gb|EDX52001.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197213300|gb|ACH50697.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197243513|gb|EDY26133.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197290855|gb|EDY30209.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197938788|gb|ACH76121.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199605041|gb|EDZ03586.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205273749|emb|CAR38744.1| site-specific integrase/recombinase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205324693|gb|EDZ12532.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205327977|gb|EDZ14741.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205334414|gb|EDZ21178.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205349044|gb|EDZ35675.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206710110|emb|CAR34465.1| site-specific integrase/recombinase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224469360|gb|ACN47190.1| tyrosine recombinase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261248176|emb|CBG26012.1| Tyrosine recombinase xerD [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995198|gb|ACY90083.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159600|emb|CBW19119.1| Tyrosine recombinase xerD [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312914065|dbj|BAJ38039.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321225719|gb|EFX50773.1| Tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322613442|gb|EFY10383.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322621034|gb|EFY17892.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624098|gb|EFY20932.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628163|gb|EFY24952.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633282|gb|EFY30024.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636140|gb|EFY32848.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639478|gb|EFY36166.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647589|gb|EFY44078.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648773|gb|EFY45220.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653828|gb|EFY50154.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657934|gb|EFY54202.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664037|gb|EFY60236.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668952|gb|EFY65103.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673054|gb|EFY69161.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677955|gb|EFY74018.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681131|gb|EFY77164.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687939|gb|EFY83906.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322716035|gb|EFZ07606.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323131400|gb|ADX18830.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323194865|gb|EFZ80052.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196616|gb|EFZ81764.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202684|gb|EFZ87724.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207829|gb|EFZ92775.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212619|gb|EFZ97436.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214898|gb|EFZ99646.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222629|gb|EGA06994.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225092|gb|EGA09344.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230614|gb|EGA14732.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235035|gb|EGA19121.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239074|gb|EGA23124.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244568|gb|EGA28574.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247183|gb|EGA31149.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253334|gb|EGA37163.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256359|gb|EGA40095.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262465|gb|EGA46021.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267439|gb|EGA50923.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269157|gb|EGA52612.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326624789|gb|EGE31134.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326629082|gb|EGE35425.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 298 Score = 136 bits (343), Expect = 4e-30, Method: Composition-based stats. Identities = 42/279 (15%), Positives = 92/279 (32%), Gaps = 24/279 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESRKH 128 I ++ + +LA N+ ++ ++ + + + + + Sbjct: 8 IEQFLDALWLERNLAENTLSAYRRDLSMVVAWLHHRGKTLATAQADDLQTLLAERVEGGY 67 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +S+ + L++MR F+ R++Y +P + PK + ++ +++ Sbjct: 68 KATSSARLLSAMRRFFQHLYREKYREDDPSAQLASPKLPQRLPKDLSEAQVERLLQAPLI 127 Query: 189 G----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243 + + E L +GLR S+ + + ++ V L + + Sbjct: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187 Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290 L + F + Q+M F K A AG++ S H +R Sbjct: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + GA + G + + YT A Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286 >gi|114048718|ref|YP_739268.1| tyrosine recombinase XerD [Shewanella sp. MR-7] gi|113890160|gb|ABI44211.1| tyrosine recombinase XerD [Shewanella sp. MR-7] Length = 300 Score = 136 bits (343), Expect = 4e-30, Method: Composition-based stats. Identities = 45/281 (16%), Positives = 99/281 (35%), Gaps = 24/281 (8%) Query: 74 LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR---K 127 LI + L+ N+ ++ + R ++ +R+ + R + Sbjct: 10 LIDAFLDDLWSSKGLSDNTLSAYRTDLRHFDRYQQSQGLRLIEVGQADVRAYLAYRVQQQ 69 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +S+ + L+S+R + + ++ + +A +P +E PK + ++ + + + + Sbjct: 70 FARTSSARLLSSLRRFYTYLLQTKQIAGDPMALIESPKLSRQLPDSLSESQVDRLLAEPN 129 Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVEL----P 238 + + E L +GLR S+ ++ + ++ G V + Sbjct: 130 VDDPVECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVRIVGKGGKERLVPMGELAI 189 Query: 239 DGFMKLLAMTPIGKETFFINNDKQK------MNATQFSIWFKAKATKAGVN--KSAHGVR 290 + L+ ++ M F K A++AG+ S H +R Sbjct: 190 TEVERYLSFARHELLGNIQSDVVFPSKRSQMMTRQTFWHRIKLYASRAGIETELSPHTLR 249 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 AT + GA + G + + YT A R RL Sbjct: 250 HAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVA-RARL 289 >gi|154498071|ref|ZP_02036449.1| hypothetical protein BACCAP_02052 [Bacteroides capillosus ATCC 29799] gi|150273061|gb|EDN00218.1| hypothetical protein BACCAP_02052 [Bacteroides capillosus ATCC 29799] Length = 298 Score = 136 bits (343), Expect = 4e-30, Method: Composition-based stats. Identities = 41/275 (14%), Positives = 92/275 (33%), Gaps = 23/275 (8%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVESRKHTP 130 Y K+ SL N+ S+ Q + + + + + Sbjct: 14 ESYLKTEKKASL--NTLSSYLRDIHQYAGWLEGESLTAEQANQADVERYVKHLSGKGKSV 71 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS--- 187 ++ + L SM+ + + + V INP + K + + + T +++ F Sbjct: 72 ATVTRSLASMKSFYNFLIGAGVVTINPVRGITPAKVERKLPQILTSKEVDLFLEQPDPSD 131 Query: 188 -EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246 +G + + E L +G+R S+ ++H+ + ++ + L ++ L Sbjct: 132 AKGCRDKAMLELLYATGIRVSELIGLNLEHVNLSAGFVRCVGRSKERIIPLYPAAVRALT 191 Query: 247 MTPIGKETFFINNDKQ----------KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294 I + + +M+ F K KAG+ K + H +R A Sbjct: 192 AYMTQVRPQMIEHPDEKALFVNMNGERMSRQGFWKIIKHYQEKAGIRKDITPHTLRHSFA 251 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + GA + G + + Y + ++ Sbjct: 252 AHLLENGADLRSIQEMLGHADISSTQIYAQLVNQK 286 >gi|256822057|ref|YP_003146020.1| tyrosine recombinase XerD [Kangiella koreensis DSM 16069] gi|256795596|gb|ACV26252.1| tyrosine recombinase XerD [Kangiella koreensis DSM 16069] Length = 295 Score = 136 bits (343), Expect = 4e-30, Method: Composition-based stats. Identities = 45/282 (15%), Positives = 103/282 (36%), Gaps = 27/282 (9%) Query: 71 LKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR- 126 ++ + + + L+ + S+ S + D + + I+ + R Sbjct: 6 IEQFCDQVWME----QGLSDATLSSYRSDLKLFNQWLQKQGKDLLRSSPFDIQQYLAERY 61 Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 +++ S +FL+S R +++ ++ + ++P ++ PK + + +++++ S Sbjct: 62 TKQYSSRSTARFLSSARKFYRYLIQSNQIKVDPTQQIDSPKIQPPVPKSLSEDEVDSLLS 121 Query: 185 FWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPD 239 G + + E L SGLR ++ V + ++ V + + Sbjct: 122 QPDLETALGLRDKAMLELLYSSGLRITELISVEVNQIGFQQGVMRVIGKGNKERLVPIGE 181 Query: 240 GFMKLLAMTPIG----------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287 ++ +++ + F++ Q+M F K A AG+ K S H Sbjct: 182 EALQAISLYIRHGRAELANEKVCDWLFLSTRGQRMTRQTFWHRIKLYAKTAGIRKHLSPH 241 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R AT + GA L G + + YT A Sbjct: 242 TLRHAFATHLLNHGADLRTLQMLLGHSDLSTTQIYTHVAKER 283 >gi|148379825|ref|YP_001254366.1| tyrosine recombinase XerD [Clostridium botulinum A str. ATCC 3502] gi|153931147|ref|YP_001384123.1| tyrosine recombinase XerD [Clostridium botulinum A str. ATCC 19397] gi|153934877|ref|YP_001387663.1| tyrosine recombinase XerD [Clostridium botulinum A str. Hall] gi|148289309|emb|CAL83405.1| tyrosine recombinase [Clostridium botulinum A str. ATCC 3502] gi|152927191|gb|ABS32691.1| tyrosine recombinase XerD [Clostridium botulinum A str. ATCC 19397] gi|152930791|gb|ABS36290.1| tyrosine recombinase XerD [Clostridium botulinum A str. Hall] Length = 291 Score = 136 bits (343), Expect = 4e-30, Method: Composition-based stats. Identities = 38/278 (13%), Positives = 103/278 (37%), Gaps = 19/278 (6%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTPS 131 +I Y K +L+ N+ ++ ++ + + T I + V+ + Sbjct: 4 IIENYIKDLQKKNLSKNTLEAYRRDVEKFSEFVRNREERILSVDTVTIMAFVQYLQREGR 63 Query: 132 SAIQFLTSM---RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187 + + ++ R +K+ +++ V+ +P L E PK + + + E++ + + + Sbjct: 64 ATSSIVRNIVSVRNFYKYLIKKNMVSEDPTLGYEIPKIERTIPKILSVEEVDKLLNSPNS 123 Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVELPDGFMKL 244 +G + + E + +G++ ++ + + IK + + + + +K Sbjct: 124 SKKGLRDKAMLELMYATGVKITELLNLNIYDINLKFNYIKCRGSKKRERIIPIGSYAIKC 183 Query: 245 LAMTPIGKETFFINNDKQ--------KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294 L + + N +M F K A +A ++K ++ +R A Sbjct: 184 LKNYLEVRPAINVYNLDYLFLNLKGTQMTRQGFWKIIKFYAKEASIDKEIDSYTLRHSFA 243 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 GA + G K + + Y+ + + ++ Sbjct: 244 VHLLQNGADIKSVQELLGHKDLAATQIYSSISKKSKIA 281 >gi|118594353|ref|ZP_01551700.1| Tyrosine recombinase XerD [Methylophilales bacterium HTCC2181] gi|118440131|gb|EAV46758.1| Tyrosine recombinase XerD [Methylophilales bacterium HTCC2181] Length = 295 Score = 136 bits (343), Expect = 4e-30, Method: Composition-based stats. Identities = 49/282 (17%), Positives = 99/282 (35%), Gaps = 26/282 (9%) Query: 74 LISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGD------FDYRKITTKHIRSGVESR 126 +I ++ L+ N+ S+ G+ D ++ + + Sbjct: 5 IIDDFIDHLWLEDGLSKNTLNSYRFDLIIFDSWLGEQKKIAMMDVSELEIQEFLAFKFPS 64 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + S + L ++R F++ +R++ + +P L ++ PK + ++E+++ Sbjct: 65 SKS-RSISRLLATLRRFFRYQLREKKIQKDPTLKIQTPKIPKSLPKSLSEEEVESLLDAP 123 Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAG-VQHLQNNIFSIKTQKTGTIITVELPDGF 241 + G + R E L GLR ++ + + ++ T K V + + Sbjct: 124 NLDSSSGLRDRSMLELLYACGLRVTELVDIQLTEVILSDGVIRVTGKGSKTRLVPMGEEA 183 Query: 242 MKLLAMTP----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 + + + F+ N M F K A A +NK S H + Sbjct: 184 VDWIKKYIAEARDDILRKKTSKFLFVTNRGGAMTRQAFWYVIKKYAVIANINKPMSPHIL 243 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 R AT + GA + G + + YT A R RL Sbjct: 244 RHAFATHLINHGADLRVVQMLLGHTDISTTQIYTHVA-RERL 284 >gi|28868685|ref|NP_791304.1| integrase/recombinase XerD [Pseudomonas syringae pv. tomato str. DC3000] gi|28851924|gb|AAO54999.1| integrase/recombinase XerD [Pseudomonas syringae pv. tomato str. DC3000] gi|331016306|gb|EGH96362.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 298 Score = 136 bits (342), Expect = 5e-30, Method: Composition-based stats. Identities = 52/291 (17%), Positives = 106/291 (36%), Gaps = 24/291 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR---K 127 LI + + L+ N+R S+ S + D + I + R Sbjct: 8 LIDRFLDALWLEKGLSDNTRDSYRSDLALFNGWLQERNVDLPGAGREVILDHLAWRVENA 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 + P S +FL+ R +++ +R++ ++++P L ++ P+ + ++ D++ + Sbjct: 68 YKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADVEALLAAPD 127 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 G + R E L GLR ++ ++ + ++ V + + + Sbjct: 128 LSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEEAI 187 Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290 + G F + +M F K +AT AG+ KS H +R Sbjct: 188 VWVERYMRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGIGKSLSPHTLR 247 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 AT + GA + G + + YT A R RL +++ Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQEMHAKHHPR 297 >gi|254429866|ref|ZP_05043573.1| tyrosine recombinase XerD [Alcanivorax sp. DG881] gi|196196035|gb|EDX90994.1| tyrosine recombinase XerD [Alcanivorax sp. DG881] Length = 312 Score = 136 bits (342), Expect = 5e-30, Method: Composition-based stats. Identities = 45/284 (15%), Positives = 92/284 (32%), Gaps = 30/284 (10%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR-----SGVESR 126 WL ++ + L+ +S ++ Q+ + + + + + Sbjct: 19 SWLDQQWLE----KGLSEHSLSNYRRDISQLAVWLQHQQATLLACERYQLLEFLAARHQQ 74 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + S + L++++ ++W R+ +A +P L +ERPK + ++ D++ + Sbjct: 75 GLSARSVARQLSAVKSFYRWLKREGRIAEDPALLIERPKLGRPLPKTLSEADVEALLAAP 134 Query: 187 ----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-------------- 228 G + R E L +GLR ++ + I+ Sbjct: 135 DLSTPLGLRDRAMLEVLYATGLRVTELVTLTQSQINPRQGLIRVIGKGDKERLVPLGEEA 194 Query: 229 -TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285 + + +E F + M F K A AGV S Sbjct: 195 LHWLARYAQEGRPQLLAADQQGGNQELLFPSRRGTCMTRQTFWHRIKQLAVVAGVQKKLS 254 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 H +R AT + GA + G + + YT A + Sbjct: 255 PHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAQQR 298 >gi|119964153|ref|YP_947420.1| tyrosine recombinase XerD [Arthrobacter aurescens TC1] gi|119951012|gb|ABM09923.1| tyrosine recombinase XerD [Arthrobacter aurescens TC1] Length = 319 Score = 136 bits (342), Expect = 5e-30, Method: Composition-based stats. Identities = 52/312 (16%), Positives = 98/312 (31%), Gaps = 39/312 (12%) Query: 65 RKKPTT---LKWLISEYRKSAHW-GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTK 117 T + I++Y + LA N+ ++ + + G IT Sbjct: 3 EAATRTANGVDRAITDYLQHVGVERGLAANTLSAYRRDLARYSNFLAAQGVEQPGSITRH 62 Query: 118 HIRSGVESRKHT--------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169 H+ + V++ SA + + ++R L K+ + +P V P Sbjct: 63 HVTAFVQALSDGSDGAAALGVRSAARTVVAVRGLHKFWALEGTTTADPASDVHPPMPGKR 122 Query: 170 GIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ------- 218 + + ++ + + + R EFL +G R S++ V + Sbjct: 123 LPKAISVGEVTRILEAAGSDTATGLRDRALLEFLYSTGARISEAVGLDVDDVSLEDTGGD 182 Query: 219 ----------NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ 268 + + G LLA G F+N +++ Sbjct: 183 PAIVRLFGKGSKERLVPLGSFGARAVGAYVVRGRPLLASKGKGTPALFLNARGGRISRQS 242 Query: 269 FSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT-KG 325 K A KA + + S H +R AT + GA + G +V + YT Sbjct: 243 AWTILKTAAEKANITKDVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVT 302 Query: 326 ADRIRLGIKNSR 337 AD +R + Sbjct: 303 ADTLREVYAAAH 314 >gi|138895887|ref|YP_001126340.1| site-specific tyrosine recombinase XerD [Geobacillus thermodenitrificans NG80-2] gi|196248777|ref|ZP_03147477.1| tyrosine recombinase XerD [Geobacillus sp. G11MC16] gi|134267400|gb|ABO67595.1| DNA integration/recombination/invertion protein [Geobacillus thermodenitrificans NG80-2] gi|196211653|gb|EDY06412.1| tyrosine recombinase XerD [Geobacillus sp. G11MC16] Length = 298 Score = 136 bits (342), Expect = 5e-30, Method: Composition-based stats. Identities = 41/271 (15%), Positives = 100/271 (36%), Gaps = 26/271 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGVESRKHTPSSAIQFL 137 +LA N+ IS+E + + + + ++ H + + + + + L Sbjct: 16 RNLAHNTIISYERDLKKYVHYLREVEQLEAWGEVERLHILHFLKFLSEQGQSARTIARHL 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPR 193 S+R ++ +R++ A +P + +E P+ + + + E+++ + + + + Sbjct: 76 ASIRSFHQFLLREKMAAQDPTVHIETPQFERTLPKVLSVEEVEALLAAPQTNTPFGLRDK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252 E L +G+R S+ + + + + ++ V + ++ LA Sbjct: 136 AMLEVLYATGMRVSELVQLNLGDVHLTMGFVRCYGKGRKERIVPIGRMALEALARYLEYG 195 Query: 253 ETF------------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298 F+N+ Q++ F K + +AG+ K + H +R AT Sbjct: 196 RPQLVNPRKRATEALFLNHYGQRLTRQGFWKILKRLSKEAGIEKELTPHTLRHSFATHLL 255 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRI 329 + GA + G + + YT Sbjct: 256 ENGADLRAVQELLGHADISTTQMYTHVTKTR 286 >gi|254229667|ref|ZP_04923077.1| tyrosine recombinase XerD [Vibrio sp. Ex25] gi|262395210|ref|YP_003287064.1| site-specific recombinase XerD [Vibrio sp. Ex25] gi|151937788|gb|EDN56636.1| tyrosine recombinase XerD [Vibrio sp. Ex25] gi|262338804|gb|ACY52599.1| site-specific recombinase XerD [Vibrio sp. Ex25] Length = 305 Score = 136 bits (342), Expect = 5e-30, Method: Composition-based stats. Identities = 41/280 (14%), Positives = 97/280 (34%), Gaps = 24/280 (8%) Query: 74 LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVE---SRK 127 L+ ++ + L+ N+ S+ + +++ + I+ ++ Sbjct: 14 LVEQFLDAMWMERGLSENTLASYRNDLMKLLTWMEKHRYRLDFISLSGLQEYQSYLVDLD 73 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + +S + L+++R LF++ R++ A +P + PK + ++E + Sbjct: 74 YKQTSRARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPQRLPKDISEEQVDALLEAPD 133 Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM 242 + + E L +GLR ++ ++++ ++ G V + + + Sbjct: 134 PNDPVELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVTGKGGKERLVPMGENAV 193 Query: 243 KLLAMTPIGKET----------FFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289 + F + ++M F K A AG++ S H + Sbjct: 194 DWIETFIQQGRPALLGDTSSDIVFPSKRARQMTRQTFWHRIKYYALIAGIDTEQLSPHVL 253 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + GA + G + + YT A Sbjct: 254 RHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER 293 >gi|168180442|ref|ZP_02615106.1| tyrosine recombinase XerD [Clostridium botulinum NCTC 2916] gi|168184537|ref|ZP_02619201.1| tyrosine recombinase XerD [Clostridium botulinum Bf] gi|237795269|ref|YP_002862821.1| tyrosine recombinase XerD [Clostridium botulinum Ba4 str. 657] gi|182668654|gb|EDT80632.1| tyrosine recombinase XerD [Clostridium botulinum NCTC 2916] gi|182672365|gb|EDT84326.1| tyrosine recombinase XerD [Clostridium botulinum Bf] gi|229260695|gb|ACQ51728.1| tyrosine recombinase XerD [Clostridium botulinum Ba4 str. 657] Length = 291 Score = 136 bits (342), Expect = 5e-30, Method: Composition-based stats. Identities = 39/278 (14%), Positives = 102/278 (36%), Gaps = 19/278 (6%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESRKH 128 +I Y K +L+ N+ ++ ++ + +T ++ Sbjct: 4 IIENYIKDLQKKNLSKNTLEAYRRDVEKFSEFVRNREEKILSVDTVTIMAFVQYLQREGR 63 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187 SS ++ + S+R +K+ +++ V+ +P L E PK + + + E++ + + Sbjct: 64 ATSSIVRNIVSIRNFYKYLIKKNMVSEDPTLGYEIPKIERTIPKILSVEEVDKLLNSPDS 123 Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVELPDGFMKL 244 +G + + E + +G++ ++ + + IK + + + + +K Sbjct: 124 SKKGLRDKAMLELMYATGVKITELLNLNIYDINLKFNYIKCRGSKKRERIIPIGSYAIKC 183 Query: 245 LAMTPIGKETFFINNDKQ--------KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294 L + + N +M F K A +A ++K ++ +R A Sbjct: 184 LKNYLEVRPAINVYNLDYLFLNLKGTQMTRQGFWKIIKFYAKEAFIDKEIDSYTLRHSFA 243 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 GA + G K + + Y+ + + ++ Sbjct: 244 VHLLQNGADIKSVQELLGHKDLAATQIYSSISKKSKIA 281 >gi|56421448|ref|YP_148766.1| integrase/recombinase [Geobacillus kaustophilus HTA426] gi|56381290|dbj|BAD77198.1| integrase/recombinase [Geobacillus kaustophilus HTA426] Length = 337 Score = 136 bits (342), Expect = 5e-30, Method: Composition-based stats. Identities = 42/307 (13%), Positives = 100/307 (32%), Gaps = 25/307 (8%) Query: 41 STFIPAYMSALTGSTPKREYI---NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFES 97 G + E + + + T + L+ + + +L ++ + S Sbjct: 8 RELQRKSKRGRRGELSREELLLISDDIGEIEYTFEELLEIFIEDCELRNLREHTIKYYRS 67 Query: 98 YFDQIIRKSGD----FDYRKIT----TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVR 149 + ++ + + T +++ ++ + S L ++R F + Sbjct: 68 ELNAFVKLLKEQEIELRVSEWTGETIKRNVIMYMKEKGLKTVSINSRLRALRAFFNFLEG 127 Query: 150 QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLR 205 + + NP ++ + + + + + ++ G + LL +G+R Sbjct: 128 RNLIKSNPMKDIKLLRDRKRIVETFDNQQIKALFKACDLRTFVGLRDYTIMMLLLETGVR 187 Query: 206 CSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLLAMTP-----IGKETFFIN 258 ++ + I+ + T V + D + L + + FI Sbjct: 188 VNELVSIKTTDIIWEQKVIRIRNTKGGFERFVPIQDKMINQLKKYIAVRGSVDTDYLFIT 247 Query: 259 NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKT 315 D ++ Q K KAG+ S H R A + GA A +L A G + Sbjct: 248 RDDTPLSKKQVQDRIKEYGKKAGIKNVRCSPHTFRHTFAKLCVLNGANAFQLQAILGHTS 307 Query: 316 VDQAETY 322 ++ + Y Sbjct: 308 LEMTKVY 314 >gi|307730818|ref|YP_003908042.1| tyrosine recombinase XerD [Burkholderia sp. CCGE1003] gi|307585353|gb|ADN58751.1| tyrosine recombinase XerD [Burkholderia sp. CCGE1003] Length = 314 Score = 136 bits (342), Expect = 5e-30, Method: Composition-based stats. Identities = 44/294 (14%), Positives = 85/294 (28%), Gaps = 26/294 (8%) Query: 66 KKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 +L + + L+ N+ ++ + T Sbjct: 21 ASSASLDAFCDALWLEH----GLSRNTLDAYRRDLRLFSEWLAQSRNASLDTASEADLNA 76 Query: 125 ----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 +K +SA + L+ R + WAVR+ ++P L + K+ ++ ++ Sbjct: 77 YSAVRQKDKSTSANRRLSVFRRYYGWAVREHRAQVDPTLRIRSAKQPPRFPSTLSEAQVE 136 Query: 181 QFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITV 235 + + R E + SGLR ++ + N ++ + Sbjct: 137 ALLGAPDIDTPLGLRDRTMLELMYASGLRVTELVTLKTVEVGLNEGVVRVMGKGSKERLI 196 Query: 236 ELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--N 283 + + F+ N + M QF K A AGV Sbjct: 197 PFGEEAHGWIERYLRDARPALLGARAADALFVTNRAEGMTRQQFWNIIKRHAAAAGVHAP 256 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 S H +R AT + GA + G + + YT A + Sbjct: 257 LSPHTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVARERLKSLHAMH 310 >gi|227513195|ref|ZP_03943244.1| phage integrase family site specific recombinase [Lactobacillus buchneri ATCC 11577] gi|227083576|gb|EEI18888.1| phage integrase family site specific recombinase [Lactobacillus buchneri ATCC 11577] Length = 385 Score = 136 bits (342), Expect = 5e-30, Method: Composition-based stats. Identities = 44/357 (12%), Positives = 104/357 (29%), Gaps = 47/357 (13%) Query: 15 RTRHGKIIYYFRKG--HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 R + Y F G +G+R R+ T A + + ++ Sbjct: 7 RKKGNNWYYAFDTGTVNGKRSRIERYGGKTKKQAEATLRQALQKYENDGAVVKLTNMNVQ 66 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 + ++ L N++I++ + II K G+F R I +++ V T Sbjct: 67 QYFMYWYENYVQRELKPNTQINYLNIINKYIIPKIGNFRIRSIGPAALQNLVNDLGET-K 125 Query: 132 SAIQFLTSM---------RVLFKWA--VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 A + + + ++ + I + + + ++ T + Sbjct: 126 LAKHTVQIIVMVIKEGFKKAVYPYQLIKEDPARYIIMPKYHDDERITRKKLKIITMNQYE 185 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------- 232 Q S + + + +G+R + C ++ N +++ ++ Sbjct: 186 QILSITPPSNPFYIPLQIAFGTGMRRGEVCGLTWANVDLNGHTVEVKQAMMQEPKGKFSI 245 Query: 233 ---------------------ITVELPDGFMKLLAMTPIGKETFFINNDKQ--KMNATQF 269 + + L E+ F+ + + Sbjct: 246 VTPKTTSSYRTISIGESLVDLLKQHKKHQIEERLRYGQYYHESNFVCTKENGSPVTPNTI 305 Query: 270 SIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKG 325 + G + H +R AT+ + GA ++ A G + TY+ Sbjct: 306 KYQCDRIQKELGFPFNFHSLRHTHATMLLENGANIKDIQARLGHSRIATTMDTYSHV 362 >gi|296114058|ref|YP_003627996.1| tyrosine recombinase XerD [Moraxella catarrhalis RH4] gi|295921752|gb|ADG62103.1| tyrosine recombinase XerD [Moraxella catarrhalis RH4] gi|326559455|gb|EGE09878.1| tyrosine recombinase XerD [Moraxella catarrhalis 7169] gi|326561283|gb|EGE11642.1| tyrosine recombinase XerD [Moraxella catarrhalis 46P47B1] gi|326565171|gb|EGE15362.1| tyrosine recombinase XerD [Moraxella catarrhalis 103P14B1] gi|326567828|gb|EGE17932.1| tyrosine recombinase XerD [Moraxella catarrhalis 12P80B1] gi|326568170|gb|EGE18252.1| tyrosine recombinase XerD [Moraxella catarrhalis BC8] gi|326572813|gb|EGE22798.1| tyrosine recombinase XerD [Moraxella catarrhalis CO72] gi|326573743|gb|EGE23701.1| tyrosine recombinase XerD [Moraxella catarrhalis O35E] gi|326574632|gb|EGE24568.1| tyrosine recombinase XerD [Moraxella catarrhalis 101P30B1] Length = 307 Score = 136 bits (342), Expect = 5e-30, Method: Composition-based stats. Identities = 52/274 (18%), Positives = 95/274 (34%), Gaps = 21/274 (7%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---T 129 +SE+R + L++ +R ++ ++ + D +R+ + K + Sbjct: 20 EYLSEFRAAMLARGLSIATRNAYSQDV-RLCIRLSDTPVNLWQPSDVRNHLMCLKDAKKS 78 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE- 188 S + L S+ F W + Y NPC S++ PK + +++++ Sbjct: 79 ERSIARALASLCQFFLWQIESGYREDNPCESIKTPKLGKTLPKTLSEQEVSSLLDAPDIS 138 Query: 189 ---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKL 244 G + + E L GLR S+ ++HL T K + + L + + Sbjct: 139 SVRGLRDKAMLEVLYACGLRVSELTSLSLEHLNLTAGWLSVTGKGNKMRLIPLGEYALSA 198 Query: 245 LAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKF 292 L + F+ M F K A AG+N S H +R Sbjct: 199 LNEYLAVRGSLLIGKKDCQAVFLTEQGGYMTRHNFWHLIKKYALMAGINTAISPHTLRHA 258 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA 326 AT + GA + G + + YT A Sbjct: 259 FATHLVNHGADLRSVQLLLGHSDLSTTQIYTHVA 292 >gi|110598394|ref|ZP_01386667.1| Tyrosine recombinase XerD [Chlorobium ferrooxidans DSM 13031] gi|110340003|gb|EAT58505.1| Tyrosine recombinase XerD [Chlorobium ferrooxidans DSM 13031] Length = 304 Score = 136 bits (342), Expect = 5e-30, Method: Composition-based stats. Identities = 43/279 (15%), Positives = 96/279 (34%), Gaps = 26/279 (9%) Query: 72 KWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKH 128 + ++ + + + N+R+S+ + ++ + IT IR + Sbjct: 9 RNVLESFLNYMLIERNFSENTRVSYRNDLERYLLFMQQNAISLESITPNQIREFITELYL 68 Query: 129 TP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 T SS + ++++R L K+ + + +INP ++ +PK+ T ++ + Sbjct: 69 TGLEASSLARNISAIRSLHKFLLSERTTSINPAENLHQPKQARYLPTVLTIDETLRLLEA 128 Query: 186 WSEG-------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVEL 237 + + E L +G+R S+ Q+L ++ V + Sbjct: 129 PLLQNPQSKYFLRDKTIVELLYATGVRVSELISIQQQNLYLEAGFVRIFGKGSKERLVPV 188 Query: 238 PDGFMKLLAMTP----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--S 285 + + + F+N + ++ + A AG+ K S Sbjct: 189 GSAATEWITRYQRELRQGLSGRNSGDYLFLNARGKPLSRMAIFSMVRQYAIIAGIEKQIS 248 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H R AT + GA + G ++ + YT Sbjct: 249 PHTFRHTFATHLLEGGADLRAVQEMLGHSSISTTQIYTH 287 >gi|319944411|ref|ZP_08018685.1| tyrosine recombinase XerD [Lautropia mirabilis ATCC 51599] gi|319742372|gb|EFV94785.1| tyrosine recombinase XerD [Lautropia mirabilis ATCC 51599] Length = 342 Score = 136 bits (342), Expect = 5e-30, Method: Composition-based stats. Identities = 40/307 (13%), Positives = 90/307 (29%), Gaps = 29/307 (9%) Query: 52 TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF----DQIIRKSG 107 + I + + + + L+ N+ ++ + + Sbjct: 36 AQIDAVAQRIRQADADIQSFSDAL--WLED----GLSKNTLQAYRRDLVQLARWLAPSTR 89 Query: 108 DFDYRKITTKHIRSG--VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165 + + + + PSSA + LT ++ ++ +R+ +P L + + Sbjct: 90 GVALAEASEADLLAYLADAHGHGKPSSANRRLTVIKRFYRHLLREGRRQDDPTLRIRAMR 149 Query: 166 RKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221 + ++ ++ + G + R E L +GLR S+ + + Sbjct: 150 QPARFPATLSEAQVEALLAAPDVETALGLRDRAMLEVLYATGLRVSELVGLKLSEVSMVD 209 Query: 222 FSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFS 270 ++ V L + L F+ M F Sbjct: 210 SLVRIVGKGSKERLVPLGEEARAWLVRYLQEARPRLLGARQAEAVFVTQRATGMTRQMFW 269 Query: 271 IWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 + + A +AG+ S H +R AT + GA + G + + YT A Sbjct: 270 VLIRRHALRAGIEAQLSPHTLRHAFATHLLNHGADLRVVQVLLGHADISTTQIYTHVARA 329 Query: 329 IRLGIKN 335 + Sbjct: 330 RLKALHA 336 >gi|312126544|ref|YP_003991418.1| integrase family protein [Caldicellulosiruptor hydrothermalis 108] gi|311776563|gb|ADQ06049.1| integrase family protein [Caldicellulosiruptor hydrothermalis 108] Length = 373 Score = 136 bits (342), Expect = 5e-30, Method: Composition-based stats. Identities = 49/357 (13%), Positives = 107/357 (29%), Gaps = 47/357 (13%) Query: 17 RHGKIIYYFRK-----GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + GK Y G ++ L AL + + T Sbjct: 7 KKGKKYYIVVDIGVVDGKRKQKWLGGFETKAEAEE---ALPRILNIIYQNKNKLLEQKTF 63 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE----SR 126 L+ + + +++++ S+ S I G+++ K+T ++ + + Sbjct: 64 GELLDLWLNTVAKNRVSLSTFQSYSSSIALHIKPFLGEYELGKLTPMDLQKYYQHVMTEK 123 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + + A+ + +AV+ + + NP V+ PK++ W +E +++ Sbjct: 124 GLSSTLALYHHRIIHQALDYAVKMDMLEKNPADYVDPPKKRNYQPSIWDEETIKKALE-I 182 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK--- 243 +G+ R+ +Y+G+R + + + I KT I + Sbjct: 183 FKGTNIRIPVLLAIYTGMRIGEIAALKWEDINLEQGYITVNKTFMKINGQTYIKEKAENK 242 Query: 244 ----------------------------LLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275 L + D + + + F+ Sbjct: 243 NSYRIVAISNQVVSELKEWKAKQEKLKEELKELYHDEGFVCTFEDGRVQDPKYITKVFQK 302 Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330 K + K H +R A+I G + G T+ Y+ D R Sbjct: 303 TIEKHKLPKIRFHDLRHTHASILLKHGVDPKHISDRLGHSTITTTLNIYSHVFDEKR 359 >gi|254293092|ref|YP_003059115.1| integrase family protein [Hirschia baltica ATCC 49814] gi|254041623|gb|ACT58418.1| integrase family protein [Hirschia baltica ATCC 49814] Length = 381 Score = 136 bits (342), Expect = 5e-30, Method: Composition-based stats. Identities = 51/344 (14%), Positives = 102/344 (29%), Gaps = 19/344 (5%) Query: 14 ERTRHGKIIYYF--RKGHG-RRIRLPYPHESTFIPAYMSALTGSTPK-----REYINSPR 65 + G+ Y+ R RRI + T A A + + Sbjct: 31 RIRKSGRKSYFVMSRYKGRMRRITIGQHGPLTAEDARKQAKSILHDLSSGIDPTEDKTKI 90 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124 ++ T+K L + L ++ ++ + I+ K G + ++ + I + Sbjct: 91 RQSGTVKKLCERFMIEYVPQHLKPSTASEYKRSIEIFILPKLGRLIVKDVSRQDIIALHH 150 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + TP A + L + +LF A K + E + + Q Sbjct: 151 DMRGTPYQANRTLGVLSILFSQAEVWGLRDEFTNPCRGIKKFREEKRERFLSLEELQRLG 210 Query: 185 F-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVEL 237 + + L+ +G R + + H+ + + KTG Sbjct: 211 RALHEETALAPSAVACIKLLILTGCRLGEIQKLKWVHVDLDRQLLLLPDSKTGKKTIYLG 270 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATI 296 L + F I KQ T ++ A + + H +R A+ Sbjct: 271 TSAVDLLKSTPRQLDNPFVIAGYKQGQYLTDLQKPWRRIRKAANLEDVRIHDLRHTYAST 330 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 + G + + G Y AD ++ + +IS Sbjct: 331 AVANGESLPMIGKLLGHSQPQTTARYAHLADIQ--AVEVADKIS 372 >gi|320527482|ref|ZP_08028663.1| putative site-specific tyrosine recombinase XerC [Solobacterium moorei F0204] gi|320132195|gb|EFW24744.1| putative site-specific tyrosine recombinase XerC [Solobacterium moorei F0204] Length = 307 Score = 136 bits (342), Expect = 5e-30, Method: Composition-based stats. Identities = 38/298 (12%), Positives = 97/298 (32%), Gaps = 31/298 (10%) Query: 71 LKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYR---KITTKHIRSGVESR 126 + + + + A + + ++ ++ ++ + + +T + + Sbjct: 3 FEKSLDRFLRQIARVRTGSKDTENAYRRDVERFLEYLREHRIDSFEHVTKTDVSDYITQL 62 Query: 127 KH--------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + SS + L+S++ +++ R E + NP + + + T + Sbjct: 63 RDGEIGGKPLSNSSYARNLSSLKSFYRYLNRFEGIKANPVRIFKGGSIRRKLPEFLTFDQ 122 Query: 179 MQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTII 233 M+ + + + R E + GLR S+ + + K Sbjct: 123 METMLNQFDLHDPVQIRNRCIIEVMYACGLRVSECAGLKISSINLVEGFLTVLGKESKER 182 Query: 234 TVELPDGFMKLLAMTPIG-----------KETFFINNDKQKMNATQFSIWFKAKATKAG- 281 V +L+ + F+N + + ++A + + A Sbjct: 183 MVPFYPRCKQLIQYYMNNARGTFMEKTQEHDILFVNQNGRPISARSIQLICEKAGEDANL 242 Query: 282 -VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337 ++ H +R AT D GA + G + + + YT DR+R + + Sbjct: 243 PIHIHPHMIRHSFATHMLDNGADLRIVQELLGHENLGTTQIYTHVTQDRLRKVVDEAH 300 >gi|23099302|ref|NP_692768.1| integrase:recombinase [Oceanobacillus iheyensis HTE831] gi|34222800|sp|Q7ZAM3|XERD_OCEIH RecName: Full=Tyrosine recombinase xerD gi|22777531|dbj|BAC13803.1| integrase : recombinase [Oceanobacillus iheyensis HTE831] Length = 297 Score = 136 bits (342), Expect = 5e-30, Method: Composition-based stats. Identities = 45/286 (15%), Positives = 106/286 (37%), Gaps = 26/286 (9%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIR---SG 122 L++ I ++ L+ N+ S++ ++ D D + KI+ I Sbjct: 2 LEYAIEDFFHFLRIERGLSDNTLSSYKRDLTNYLQYMKDHDKTATWDKISRTDIMGFLYM 61 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 ++ + + ++ + ++S+R ++ +R++ + +P L +E PK+ + +++++ + Sbjct: 62 LKDQGKSTATISRHISSIRSFHQFLIREQITSNDPSLHIETPKKDRKLPDILSQDEVDRL 121 Query: 183 K---SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ------------ 227 + + E L +GLR S+ V L + ++ Sbjct: 122 LEIKMNTKLSVRNKAMLELLYATGLRVSELISLNVSDLHLMMGFVQCFGKGSKERIVPLG 181 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285 T + L ++ F+N +++ F K +AG+ + Sbjct: 182 DTAKHYLEKYISEARDSLIKKNNREDALFVNQHGRRLTRQGFWKILKGLTLEAGILKTIT 241 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 H +R AT + GA + G + + YT + RL Sbjct: 242 PHTLRHSFATHLLENGADLRLVQEMLGHADISTTQVYTHVT-KARL 286 >gi|308187997|ref|YP_003932128.1| Tyrosine recombinase xerD [Pantoea vagans C9-1] gi|308058507|gb|ADO10679.1| Tyrosine recombinase xerD [Pantoea vagans C9-1] Length = 297 Score = 136 bits (342), Expect = 5e-30, Method: Composition-based stats. Identities = 47/282 (16%), Positives = 96/282 (34%), Gaps = 24/282 (8%) Query: 72 KWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESR-- 126 L ++ + +LA N+ S+ + +T ++ + R Sbjct: 4 SELTEQFLDALWIERNLAQNTLSSYRQDLQTLTGWLTHHQLTLLSVTPLDLQQFLAERLE 63 Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + +S+ + L++MR LF++ R++ +P + PK + ++ +++ Sbjct: 64 GGYKATSSARLLSAMRRLFQYLYREKLRPDDPSALLSAPKLPQRLPKDLSEAQVERLLQA 123 Query: 186 WSEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDG 240 + + E L +GLR S+ + + ++ V L + Sbjct: 124 PDTNIPLELRDKAMLEVLYATGLRVSELTGLTLSDISLRQGVVRVIGKGDKERLVPLGEE 183 Query: 241 FMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287 + L + F +N Q+M F K AT AG++ S H Sbjct: 184 AVYWLEQYMEHGRPWLLNGQTLDVMFPSNRAQQMTRQTFWHRIKHYATLAGIDSEKLSPH 243 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R AT + GA + G + + YT A Sbjct: 244 VMRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 285 >gi|253997885|ref|YP_003049948.1| tyrosine recombinase XerC [Methylovorus sp. SIP3-4] gi|253984564|gb|ACT49421.1| tyrosine recombinase XerC [Methylovorus sp. SIP3-4] Length = 292 Score = 136 bits (342), Expect = 5e-30, Method: Composition-based stats. Identities = 43/270 (15%), Positives = 90/270 (33%), Gaps = 18/270 (6%) Query: 73 WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT-- 129 + +Y H L+ +R +++ ++ +G+ + +T HIR V + Sbjct: 3 DYLVQYLDHLSHERRLSPLTRENYQRDLRVLLELNGEVPLQNMTGTHIRRHVATLHGRNL 62 Query: 130 -PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 S + L++ R F++ +++ + NPC + PK + + Q S E Sbjct: 63 GGRSIARMLSAWRGFFEFLIQRHGFSANPCQGIRAPKSPKSLPHALSPDQAVQLVSIDDE 122 Query: 189 GS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKL 244 + + E SGLR ++ + L T K V + M Sbjct: 123 DTLAQRDHAMLELFYSSGLRLAELVNLDLDALNLGEGTITVTGKGNKTRIVPVGQHAMNA 182 Query: 245 LAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSA 294 L + I + ++++ + A + G+N H +R A Sbjct: 183 LQAWLAIRSGLPIQDTSALFLSRLGKRLSRRAVQYRLQQWAIRQGINIRVHPHMLRHSFA 242 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324 + + + G + + YT Sbjct: 243 SHVLQSSGDLRAVQEMLGHANISTTQVYTH 272 >gi|163803381|ref|ZP_02197257.1| tyrosine recombinase [Vibrio sp. AND4] gi|159172843|gb|EDP57685.1| tyrosine recombinase [Vibrio sp. AND4] Length = 305 Score = 136 bits (342), Expect = 5e-30, Method: Composition-based stats. Identities = 40/280 (14%), Positives = 97/280 (34%), Gaps = 24/280 (8%) Query: 74 LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVE---SRK 127 L+ ++ + L+ N+ S+ + +++ + I+ ++ Sbjct: 14 LVEQFLDAMWMERGLSENTLASYRNDLMKLLVWMEQHCYHLSFISLSGLQEYQSYLVDLD 73 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + +S + L+++R LF++ R++ + +P + PK + ++E + Sbjct: 74 YKQTSRARMLSAIRRLFQYIHREKVRSDDPSALLVSPKLPQRLPKDISEEQVDALLDAPD 133 Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM 242 + + E L +GLR ++ ++++ ++ G V + + + Sbjct: 134 PNDPIELRDKAMLELLYATGLRVTELVSLTMENVSLRQGVVRVTGKGGKERLVPMGENAV 193 Query: 243 KLLAMTPIGKET----------FFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289 + F + ++M F K A AG++ S H + Sbjct: 194 DWIETFIKQGRPALLGEKTSDVVFPSKRARQMTRQTFWHRIKHYAVIAGIDTGHLSPHVL 253 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + GA + G + + YT A Sbjct: 254 RHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER 293 >gi|119386556|ref|YP_917611.1| phage integrase family protein [Paracoccus denitrificans PD1222] gi|119377151|gb|ABL71915.1| phage integrase family protein [Paracoccus denitrificans PD1222] Length = 357 Score = 136 bits (342), Expect = 5e-30, Method: Composition-based stats. Identities = 61/354 (17%), Positives = 120/354 (33%), Gaps = 24/354 (6%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLP---YPHESTFIPAYMSALTGSTPKREYINSPR 65 P + E R+G Y R + +R+ P + F Y +A G + Sbjct: 6 PGLLIESHRNGSPRYRVRVEGRKHVRIHLPVGPEDKDFANYYYAARAGERWLPSER---K 62 Query: 66 KKPTTLKWLISEYR----KSAHWGSLAVNSRISFESYFDQIIRK-------SGDFDYRKI 114 ++ WL +EY + G ++ + S ++ GDFD Sbjct: 63 AVKGSIDWLCAEYLSFVARMVEAGQMSPATLKQRRSVLRRLCDYSGGGSVRYGDFDMDAP 122 Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-IRP 173 I ++ P +A + ++R ++ WA +EY+ NP ++ G P Sbjct: 123 AAAFIE-IRDAWATHPGAADNLIKTVRAVYTWAQEREYIRHNPAAGIKAINVNPAGGAVP 181 Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233 W+ ++++F+ G+ L ++ R D+ G + Sbjct: 182 WSVAELKKFREHHPRGTTAHLWLTLHAFTACRIGDAIWLGRAQEVMRDGQLWLGWQPRKR 241 Query: 234 ----TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHG 288 + G K + + + + AG+ +S+HG Sbjct: 242 GSAFVSIPMMPPLIAATRAADGPAYLLNEKGKPFASVEALRVRVQRWCSAAGIPDRSSHG 301 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342 +RK + A G T +++MA +E YTK R L + ++++ Sbjct: 302 IRKAVGELMAQNGCTQYQVMAVMAHTQAKTSEIYTKRVKRQILAADGVKALAAL 355 >gi|296332285|ref|ZP_06874747.1| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674986|ref|YP_003866658.1| site-specific tyrosine recombinase for chromosome partitioning [Bacillus subtilis subsp. spizizenii str. W23] gi|296150599|gb|EFG91486.1| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413230|gb|ADM38349.1| site-specific tyrosine recombinase for chromosome partitioning [Bacillus subtilis subsp. spizizenii str. W23] Length = 296 Score = 136 bits (342), Expect = 5e-30, Method: Composition-based stats. Identities = 39/269 (14%), Positives = 95/269 (35%), Gaps = 24/269 (8%) Query: 85 GSLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVESRKHTPS---SAIQFL 137 L+ N+ +S+E + D+ +T HI ++ K + ++ + L Sbjct: 16 RGLSQNTVVSYERDLKSYSLYLTETLHVTDWNHVTRIHIIQYLKHLKDSGKSGKTSARHL 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193 S+R ++ +R++ +P + +E K + + ++++ G + + Sbjct: 76 ASIRSFHQFLLREKVTDKDPSVHIETQKTERALPKVLALNEVERLLDTPKLTSPFGYRDK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252 E L +G+R S+ + ++ ++ V + + + Sbjct: 136 AMLELLYATGIRVSEMIELKTADVHLSMGFVRCFGKGRKERIVPIGEAAASAIEEYITKA 195 Query: 253 ETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 F+N+ ++++ F K A +AG+ K + H +R A+ + Sbjct: 196 RGKLLKNNVSDALFLNHHGKQISRQGFWKNLKKIALEAGIKKELTPHTLRHSFASHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329 GA + G + + YT Sbjct: 256 GADLRAVQEMLGHADISTTQIYTHVTKTR 284 >gi|295108294|emb|CBL22247.1| tyrosine recombinase XerD subunit [Ruminococcus obeum A2-162] Length = 294 Score = 136 bits (342), Expect = 5e-30, Method: Composition-based stats. Identities = 40/274 (14%), Positives = 98/274 (35%), Gaps = 23/274 (8%) Query: 72 KWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGVESRK 127 + ++ ++ + + N+ +S+E ++IR + D ++T ++ + K Sbjct: 2 ERVVEDFILYLHETKNTSKNTEVSYERDLKKLIRYLQEQDLTSFSEVTCTDLQGYLNKIK 61 Query: 128 H---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK- 183 S+ + + S+R L+ + +++ VA +P + PK + + + E++ + Sbjct: 62 SENLAASTISRNIASIRALYHYLLKKGIVAEDPTEVLHTPKIEKKLPEILSVEEVDRLLK 121 Query: 184 ---SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 +G + E L +G+R S+ + + + + + + + Sbjct: 122 QPDIRTPKGIRDNAMMELLYATGMRVSELIHLSTTDINLQMGYVVCHDSDKERIIPIGNV 181 Query: 241 FMKLLAMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288 + FF N + M+ F K A AG+++ + H Sbjct: 182 SRNAILQYMEHSRGFFTKDTNESALFTNCSGKSMSRQGFWKVLKGYAADAGIHRDITPHT 241 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETY 322 +R A GA + G + + Y Sbjct: 242 LRHSFAAHMLQNGADVKSVQEMLGHADISSTQIY 275 >gi|293400524|ref|ZP_06644669.1| integrase/recombinase XerC [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305550|gb|EFE46794.1| integrase/recombinase XerC [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 305 Score = 136 bits (342), Expect = 5e-30, Method: Composition-based stats. Identities = 37/279 (13%), Positives = 90/279 (32%), Gaps = 29/279 (10%) Query: 88 AVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSGVESRK--------HTPSSAIQF 136 + +++ +++ + + + + + V + ++ + Sbjct: 19 SAHTKDAYQRDITEFLDFLKSENIMSLDDVDRIIVMNYVSHLRERDGRQGTMKNATVARK 78 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQP 192 L+S+R +++ V NP L + PK+ +++ F + + + Sbjct: 79 LSSLRSYYRYLNEYVGVQNNPFLYFKAPKQTRRIPEFLFYDEIALFLASFDLHEAVDVRD 138 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMTPIG 251 R FE + SGLR S++ + + + K V D + L Sbjct: 139 RALFELMYASGLRVSEAVNLRLSDIDFHDNILHIIGKGDKQRLVPFYDLAKERLVDYIEH 198 Query: 252 KETFFINNDKQ----------KMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISAD 299 ++N + + + + A K ++ H R AT D Sbjct: 199 VRPKWVNTLQHEYVFVNQKGKPLTSRGVQYRMELAAKKCHLHLHIHPHMFRHSFATHLLD 258 Query: 300 AGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337 GA + G ++ + Y DR++ +++ Sbjct: 259 NGADLRVVQELLGHASLSTTQIYVHVTQDRLKSAYEHAH 297 >gi|71736133|ref|YP_273616.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. phaseolicola 1448A] gi|71556686|gb|AAZ35897.1| tyrosine recombinase XerD [Pseudomonas syringae pv. phaseolicola 1448A] Length = 298 Score = 136 bits (342), Expect = 5e-30, Method: Composition-based stats. Identities = 52/281 (18%), Positives = 103/281 (36%), Gaps = 24/281 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR---K 127 LI + + L+ N+R S+ S + D + I + R Sbjct: 8 LIDRFLDALWLEKGLSDNTRDSYRSDLALFNGWLQERNADLPSAGREVILDHLAWRVENA 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 + P S +FL+ R +++ +R++ ++++P L ++ P+ + ++ D++ + Sbjct: 68 YKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADVEALLAAPD 127 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 G + R E L GLR ++ ++ + ++ V + + + Sbjct: 128 LSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEEAI 187 Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290 + G F + +M F K +AT AG+ KS H +R Sbjct: 188 VWVERYLRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGIGKSLSPHTLR 247 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 AT + GA + G + + YT A R RL Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARL 287 >gi|312135537|ref|YP_004002875.1| tyrosine recombinase xerd [Caldicellulosiruptor owensensis OL] gi|311775588|gb|ADQ05075.1| tyrosine recombinase XerD [Caldicellulosiruptor owensensis OL] Length = 291 Score = 136 bits (342), Expect = 6e-30, Method: Composition-based stats. Identities = 36/278 (12%), Positives = 97/278 (34%), Gaps = 23/278 (8%) Query: 74 LISEYRKSAHWGSL-AVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRK 127 ++ + + + N+ S+ + I + + T ++ Sbjct: 3 IVEAFCDHLQRQNRFSQNTISSYLRDAKKYIEFLDNMKIKLENTSQATLIAYIISMQKSG 62 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + S+ + + S++V + + + + + + +E PK + + T++++++ S Sbjct: 63 KSNSTIARAIVSLKVFYDFL-KTQKIIDIGKIEIEPPKLEKNPPQILTRDEVEKLLSCPK 121 Query: 188 E----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 E G + + E L +G++ S+ + + I + + + + Sbjct: 122 EDDIKGIRDKAMLELLYATGIKVSELINLNLDDINLEHGYIICKNKKRDRVIPIGSYAIS 181 Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291 + + F+N + ++M F K A A ++K + H +R Sbjct: 182 AVEKYLRYSRPYLAKSKDEEALFLNFNGERMTRQGFWKIVKFYAQSAEIDKEITPHVLRH 241 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + GA + G + + Y + A+ Sbjct: 242 SFATHLIENGADVRAVQQMLGHADISTTQRYLQVANVK 279 >gi|198277388|ref|ZP_03209919.1| hypothetical protein BACPLE_03600 [Bacteroides plebeius DSM 17135] gi|198269886|gb|EDY94156.1| hypothetical protein BACPLE_03600 [Bacteroides plebeius DSM 17135] Length = 303 Score = 136 bits (342), Expect = 6e-30, Method: Composition-based stats. Identities = 55/293 (18%), Positives = 109/293 (37%), Gaps = 24/293 (8%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKH 128 K +I +YR+ SL+ N+ ++ + D++ + ++T +++ + + Sbjct: 7 KSIIIKYRQYLKLEKSLSANTVEAYLTDLDKLFAFLELESIHFTEVTLENLETFSAGLRD 66 Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ---- 181 P S + L+ +R F++ + ++Y+ +P +E P+ T E++ + Sbjct: 67 IGIHPRSQARILSGIRSFFRFLLLEDYIQQDPSELLESPQIGKHLPDVLTVEEIDRLIGS 126 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG 240 EG + R E L GLR S+ C + L F K V + Sbjct: 127 IDRSTREGQRNRAILETLYSCGLRVSELCNLKLSDLYLKEKFIKVEGKGSKQRLVPISPR 186 Query: 241 FMKLLAMTPI----------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHG 288 + L + ++ FI+ + ++ K A + G+ K+ H Sbjct: 187 AIHELELYFPDRNEGLIKPGYEDFVFISRFGKNISRIMVFHIIKELAEQIGLKKTISPHT 246 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 R AT + GA + G +++ E YT DR RL + Sbjct: 247 FRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYTH-LDRSRLRQEILEHHPR 298 >gi|114331692|ref|YP_747914.1| tyrosine recombinase XerD [Nitrosomonas eutropha C91] gi|114308706|gb|ABI59949.1| tyrosine recombinase XerD [Nitrosomonas eutropha C91] Length = 305 Score = 136 bits (342), Expect = 6e-30, Method: Composition-based stats. Identities = 50/281 (17%), Positives = 101/281 (35%), Gaps = 26/281 (9%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVESR---KHTPSSAIQFL 137 L+ N+ S+ + Q++ + +T + + + R S+A + L Sbjct: 23 GLSRNTLASYRADLMQLVEWLSRREQTNGLLNDVTQADLLAFLSDRIAQGAKASTASRAL 82 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWSEGSQPR 193 +R +++ +RQ + I+P ++++ PK + +++ G + R Sbjct: 83 ACIRRFYRYLLRQGKILIDPAVNIDSPKVSRHLPVSLAESEVEALLAVSDIKQPLGLRDR 142 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMT---- 248 E L +GLR S+ + ++ ++ ++ K + L D + L + Sbjct: 143 AMLEILYAAGLRVSELVSLAISQVRQDMGVVRILGKGNKERLIPLGDEALYWLDLYLREA 202 Query: 249 ------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300 F+ M F K A +AG+ S H +R AT + Sbjct: 203 RPILLAGKHSNMLFVTTRGDAMTRQAFWYLIKRHARQAGIVKQLSPHTLRHAFATHLLNH 262 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 GA + G + + YT A R RL ++R Sbjct: 263 GADLRVVQLLLGHSDISTTQIYTHVA-RERLRQLHARHHPR 302 >gi|289625892|ref|ZP_06458846.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646210|ref|ZP_06477553.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. aesculi str. 2250] gi|298488278|ref|ZP_07006311.1| Site-specific recombinase XerD [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157217|gb|EFH98304.1| Site-specific recombinase XerD [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330867528|gb|EGH02237.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 298 Score = 136 bits (342), Expect = 6e-30, Method: Composition-based stats. Identities = 52/291 (17%), Positives = 106/291 (36%), Gaps = 24/291 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR---K 127 LI + + L+ N+R S+ S + D + I + R Sbjct: 8 LIDRFLDALWLEKGLSDNTRDSYRSDLALFNGWLQERNVDLPSAGREVILDHLAWRVENA 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 + P S +FL+ R +++ +R++ ++++P L ++ P+ + ++ D++ + Sbjct: 68 YKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADVEALLAAPD 127 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 G + R E L GLR ++ ++ + ++ V + + + Sbjct: 128 LSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEEAI 187 Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290 + G F + +M F K +AT AG+ KS H +R Sbjct: 188 VWVERYLRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGIGKSLSPHTLR 247 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 AT + GA + G + + YT A R RL +++ Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQEMHAKHHPR 297 >gi|157960633|ref|YP_001500667.1| tyrosine recombinase XerD [Shewanella pealeana ATCC 700345] gi|157845633|gb|ABV86132.1| tyrosine recombinase XerD [Shewanella pealeana ATCC 700345] Length = 300 Score = 136 bits (341), Expect = 6e-30, Method: Composition-based stats. Identities = 49/292 (16%), Positives = 98/292 (33%), Gaps = 28/292 (9%) Query: 66 KKPTTLKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSG 122 + T +I + L+ N+ ++ + + R D + IR+ Sbjct: 2 SEKYTPNSIIDLFLDDLWSTKGLSDNTLSAYRTDLRHLDRYLQKQGDDLVTCSQFDIRNY 61 Query: 123 VESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + R +S+ + ++S+R + + + ++ + +P +E PK + ++ED+ Sbjct: 62 LAERFDKGFAKTSSARMMSSLRRFYGYLIVKKQIDSDPMALIESPKLARKLPDSLSEEDI 121 Query: 180 QQ----FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------ 229 + + S+ + E L +GLR S+ ++ L ++ Sbjct: 122 DRLLAEPEQDDPIESRDKAMLELLYATGLRVSELVGLTMEQLSLRQGLVRITGKGGKERL 181 Query: 230 -------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 T I L +LL + F K A +AG+ Sbjct: 182 VPLGELAITEIESYLKFARAELLKGKQSDVLFPSKRAQQM--TRQTFWHRIKLYALRAGI 239 Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 S H +R AT + GA + G + + YT A RL Sbjct: 240 STELSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAT-ARLA 290 >gi|56414990|ref|YP_152065.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197363919|ref|YP_002143556.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56129247|gb|AAV78753.1| site-specific integrase/recombinase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197095396|emb|CAR60955.1| site-specific integrase/recombinase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 298 Score = 136 bits (341), Expect = 6e-30, Method: Composition-based stats. Identities = 42/279 (15%), Positives = 91/279 (32%), Gaps = 24/279 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESRKH 128 I ++ + LA N+ ++ ++ + + + + + Sbjct: 8 IEQFLDALWLERDLAENTLSAYRRDLSMVVAWLHHRGKTLATAQADDLQTLLAERVEGGY 67 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +S+ + L++MR F+ R++Y +P + PK + ++ +++ Sbjct: 68 KATSSARLLSAMRRFFQHLYREKYREDDPSAQLASPKLPQRLPKDLSEVQVERLLQAPLI 127 Query: 189 G----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243 + + E L +GLR S+ + + ++ V L + + Sbjct: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187 Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290 L + F + Q+M F K A AG++ S H +R Sbjct: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + GA + G + + YT A Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286 >gi|220912288|ref|YP_002487597.1| tyrosine recombinase XerD [Arthrobacter chlorophenolicus A6] gi|219859166|gb|ACL39508.1| tyrosine recombinase XerD [Arthrobacter chlorophenolicus A6] Length = 362 Score = 136 bits (341), Expect = 6e-30, Method: Composition-based stats. Identities = 55/319 (17%), Positives = 101/319 (31%), Gaps = 38/319 (11%) Query: 57 KREYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYR 112 K PT + +++Y + LA N+ ++ + R G Sbjct: 39 KAPEPVQAAAAPTKIDRGVTDYLQHMGVERGLAANTLAAYRRDLARYSRYLAGTGCQQPG 98 Query: 113 KITTKHIRSGVESRKHT--------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164 IT H+ V + SA + + ++R L K+ + + A +P V P Sbjct: 99 DITRHHVTGFVRALSDGSDGGTALGVRSAARTVVAVRGLHKFWALEGHTASDPASEVHPP 158 Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220 + T +++ + + + R EFL +G R S++ V + Sbjct: 159 MAGKRLPKAITVDEVTRILEAAGTDTATGLRDRALLEFLYSTGARISEAVGLDVDDISLA 218 Query: 221 IFSIKTQKTGTIITVELPDGF-------------------MKLLAMTPIGKETFFINNDK 261 + + + LLA G F+N Sbjct: 219 GDDTEQGPAIVRLFGKGSKERLVPLGSYGARALEAYLVRGRPLLAAKGKGTPALFLNARG 278 Query: 262 QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 +++ K A KA + + S H +R AT + GA + G +V Sbjct: 279 GRISRQSAWTILKVAAEKANITRDVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTT 338 Query: 320 ETYT-KGADRIRLGIKNSR 337 + YT AD +R + Sbjct: 339 QVYTLVTADTLREVYAAAH 357 >gi|261417849|ref|YP_003251531.1| site-specific tyrosine recombinase XerD [Geobacillus sp. Y412MC61] gi|297529517|ref|YP_003670792.1| tyrosine recombinase XerD [Geobacillus sp. C56-T3] gi|319767339|ref|YP_004132840.1| tyrosine recombinase XerD [Geobacillus sp. Y412MC52] gi|261374306|gb|ACX77049.1| tyrosine recombinase XerD [Geobacillus sp. Y412MC61] gi|297252769|gb|ADI26215.1| tyrosine recombinase XerD [Geobacillus sp. C56-T3] gi|317112205|gb|ADU94697.1| tyrosine recombinase XerD [Geobacillus sp. Y412MC52] Length = 298 Score = 136 bits (341), Expect = 6e-30, Method: Composition-based stats. Identities = 43/271 (15%), Positives = 100/271 (36%), Gaps = 26/271 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGVESRKHTPSSAIQFL 137 +LA N+ +S+E + +R + ++ H + + + + + L Sbjct: 16 RNLAHNTIVSYERDLKKYVRYLRQVEQLQAWGEVERLHILHFLKFLSEQGQSARTIARHL 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193 S+R ++ +R++ A +P + +E P+ + + + E+++ + G + + Sbjct: 76 ASIRSFHQFLLREKIAAQDPTVHIETPQFERTLPKVLSVEEVEALLAAPQVSTPFGLRDK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252 E L +G+R S+ + + + + ++ V + ++ LA Sbjct: 136 AMLELLYATGMRVSELVQLNLADVHLTMGFVRCYGKGRKERIVPIGRMAIEALAHYLERG 195 Query: 253 ETF------------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298 F+N+ Q++ F K A +AG+ K + H +R AT Sbjct: 196 RPQLVNPRRRATEALFLNHYGQRLTRQGFWKILKRLAKEAGIEKELTPHTLRHSFATHLL 255 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRI 329 + GA + G + + YT Sbjct: 256 ENGADLRAVQELLGHADISTTQMYTHVTKTR 286 >gi|312876773|ref|ZP_07736752.1| tyrosine recombinase XerD [Caldicellulosiruptor lactoaceticus 6A] gi|311796504|gb|EFR12854.1| tyrosine recombinase XerD [Caldicellulosiruptor lactoaceticus 6A] Length = 291 Score = 136 bits (341), Expect = 6e-30, Method: Composition-based stats. Identities = 39/278 (14%), Positives = 99/278 (35%), Gaps = 23/278 (8%) Query: 74 LISEYRKSAHWGSL-AVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRK 127 +I + + + N+ S+ + I + + T ++ Sbjct: 3 IIEAFGNHLQRQNRFSQNTISSYLRDAKKYIEFLDNIKIKLENTSQATLIAYIISMQKSG 62 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + S+ ++ + S++V + + + + + + +E PK + + T++++++ S Sbjct: 63 KSNSTIVRAIVSLKVFYDFL-KTQNIVDIGKIEIEPPKLEKSPPQILTRDEVEKLLSCPK 121 Query: 188 E----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 E G + + E L +G+R S+ + + I + + + + Sbjct: 122 EDDIKGIRDKAMLELLYATGIRVSELINLNLDDINLEHGYIICKNKKRDRVIPIGSYAIS 181 Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291 + + F+N + ++M F K A AG++K + H +R Sbjct: 182 AVERYLRHSRPYLAKNKDEEALFLNFNGERMTRQGFWKIVKFYAQSAGIDKEITPHVLRH 241 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + GA + G + + Y + A+ Sbjct: 242 SFATHLIENGADVRAVQQMLGHADISTTQRYLQVANVK 279 >gi|260910520|ref|ZP_05917188.1| integrase/recombinase XerD [Prevotella sp. oral taxon 472 str. F0295] gi|260635362|gb|EEX53384.1| integrase/recombinase XerD [Prevotella sp. oral taxon 472 str. F0295] Length = 304 Score = 136 bits (341), Expect = 6e-30, Method: Composition-based stats. Identities = 46/283 (16%), Positives = 99/283 (34%), Gaps = 23/283 (8%) Query: 65 RKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRK--SGDFDYRKITTKHIRS 121 ++ T+ ++ Y + +L+ N+ ++ + ++ + + + + Sbjct: 2 ERENKTVDNMVKAYMRYLKLERNLSQNTIEAYRNDLRWLLAYVNYHGLKVEAVKLEDLDN 61 Query: 122 GVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 S + TP S + L+ +R FK+ + ++ +P + P + + + Sbjct: 62 FSASLHDQRITPRSQARILSGVRSFFKFLLLDGFIDADPTELLVSPHVRNALPDVLSTAE 121 Query: 179 MQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTII 233 + + ++ EG + R E L GLR S+ + +L ++ Sbjct: 122 VDRLEASIDLSKWEGQRNRAIIEVLFSCGLRVSELVNLKLSNLYVEEKFVRVTGKGDKER 181 Query: 234 TVELPDGFMKLLAMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKAGVN 283 V + + L + I N + T I K +A AG+ Sbjct: 182 LVPISSRALDELNAWFADRNAMRIKPGEEDYVFLNRRGAHLTRTMILIMIKRQAVAAGIT 241 Query: 284 KS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 K+ H +R AT + GA + A G + + E YT Sbjct: 242 KTISPHTLRHSFATALLEGGADLIAIQAMMGHEDIATTEIYTH 284 >gi|302872232|ref|YP_003840868.1| tyrosine recombinase XerD [Caldicellulosiruptor obsidiansis OB47] gi|302575091|gb|ADL42882.1| tyrosine recombinase XerD [Caldicellulosiruptor obsidiansis OB47] Length = 291 Score = 136 bits (341), Expect = 6e-30, Method: Composition-based stats. Identities = 38/278 (13%), Positives = 97/278 (34%), Gaps = 23/278 (8%) Query: 74 LISEYRKSAHWGSL-AVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRK 127 +I + + + N+ S+ + I + + T ++ Sbjct: 3 IIEAFCDHLQKQNRFSQNTISSYLRDAKKYIEFLDNMKIKLENTSQATLIAYIISMQKSG 62 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + S+ + + S++V + + + + + + +E PK + + T++++++ S Sbjct: 63 KSNSTIARAIVSLKVFYDFL-KTQKIIDIGKIEIEPPKLEKNPPQILTRDEVEKLLSCPK 121 Query: 188 E----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 E G + + E L +G+R S+ + + I + + + + Sbjct: 122 EEDIKGIRDKAMLEVLYATGIRVSELINLNLDDINLEHGYIICKNKKRDRVIPIGSYAIS 181 Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291 + + F+N + ++M F K A AG++K + H +R Sbjct: 182 AVEKYLRHSRPYLAKSKNEEALFLNFNGERMTRQGFWKIVKFYAQSAGIDKEITPHVLRH 241 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 A + GA + G + + Y + A+ Sbjct: 242 SFAIHLIENGADVRAVQQMLGHADISTTQRYLQVANVK 279 >gi|257487154|ref|ZP_05641195.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331009225|gb|EGH89281.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 298 Score = 136 bits (341), Expect = 6e-30, Method: Composition-based stats. Identities = 52/291 (17%), Positives = 106/291 (36%), Gaps = 24/291 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR---K 127 LI + + L+ N+R S+ S + D + I + R Sbjct: 8 LIDRFLDALWLEKGLSDNTRDSYRSDLALFNGWLQERNVDLPSAGREVILDHLAWRVENA 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + P S +FL+ R +++ +R++ ++++P L ++ P+ + ++ D++ + Sbjct: 68 YKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADVEALLAAPD 127 Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 G + R E L GLR ++ ++ + ++ V + + + Sbjct: 128 LSEAIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEEAI 187 Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290 + G F + +M F K +AT AG+ KS H +R Sbjct: 188 VWVERYLRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGIGKSLSPHTLR 247 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 AT + GA + G + + YT A R RL +++ Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQEMHAKHHPR 297 >gi|255524155|ref|ZP_05391115.1| integrase family protein [Clostridium carboxidivorans P7] gi|296186613|ref|ZP_06855015.1| putative tyrosine recombinase XerD [Clostridium carboxidivorans P7] gi|255512140|gb|EET88420.1| integrase family protein [Clostridium carboxidivorans P7] gi|296048650|gb|EFG88082.1| putative tyrosine recombinase XerD [Clostridium carboxidivorans P7] Length = 292 Score = 136 bits (341), Expect = 6e-30, Method: Composition-based stats. Identities = 43/281 (15%), Positives = 98/281 (34%), Gaps = 20/281 (7%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHT 129 + +Y ++ +++ N+ ++ + + + +I I + V+ + Sbjct: 2 DKVFLKYIENLEKKNVSKNTMDAYVRDISKFYNFIKERNENVVEIEVVSIMAYVQQLQKE 61 Query: 130 PSSAIQFLT---SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + + S+R +K+ + ++ NP ++ E PK K + T E++ S Sbjct: 62 GRATSSIIRNIVSLRNFYKYLTIKGFINENPMINYEIPKVKHNIPKILTVEEVDTLLSTP 121 Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTIITVEL 237 G+ + + E L +G++ ++ + + K Q+ I Sbjct: 122 DLGTNKGIRDKAMLEVLYATGMKVTEILNITIYDINLKLAYIKCKGSKNQERIIPIGSIA 181 Query: 238 PDGFMKLLAMTPIGKETF----FINNDKQKMNATQFSIWFKAKATKAGVNKSAH--GVRK 291 + L + FIN +M F K A AGV+K + +R Sbjct: 182 IQCLQEYLKIRSQINIYNLDLLFINLRGIQMTRQGFWKIVKYYAKAAGVDKHINAFTLRH 241 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 A GA + G K + + Y+ + + ++ Sbjct: 242 SFAVHLLQNGADIKSVQELLGHKDLSATQIYSSISRKNKIA 282 >gi|169346819|ref|ZP_02865770.1| prophage lambdaba04, site-specific recombinase, phage integrase family [Clostridium perfringens C str. JGS1495] gi|169297101|gb|EDS79223.1| prophage lambdaba04, site-specific recombinase, phage integrase family [Clostridium perfringens C str. JGS1495] Length = 379 Score = 136 bits (341), Expect = 6e-30, Method: Composition-based stats. Identities = 47/376 (12%), Positives = 114/376 (30%), Gaps = 46/376 (12%) Query: 15 RTRHGKIIYYFRKG--HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 R R Y F G G+R R T A + + T Sbjct: 6 RKRGNTWYYSFDLGKVDGKRKRKEKGGFKTKTEAQKALREAINDYENCGTIVNETNITFS 65 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTP- 130 + + K + N++ + + + G + + ++ ++ + + + Sbjct: 66 DYLDYWFKEYVTINCKFNTQKYYLGIIQNHLKPILGSYKLKSLSPNVLQEFLNKKYISGL 125 Query: 131 --SSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKR-----KTEGIRPWTKEDMQQF 182 SS F + K +++ NP V+ PK E I+ T ++ + Sbjct: 126 SKSSLSNFYGVLSGSLKMAVYPYKFIKENPMQYVKIPKNSNTKVTQEKIKVLTLDEFKII 185 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------- 232 + + GS + + +GLR + C ++ + ++ + T Sbjct: 186 LNRFPFGSNFYIPLQIAFNTGLRGGEVCALTWDNIDFDNKTLTVEHTLIEKGNGIFELGT 245 Query: 233 -------ITVELPDGFMKLLAMTPIGK--------------ETFFINNDKQKMNATQFSI 271 T+ L D + +L + + Q + + Sbjct: 246 PKTKSSFRTIALGDTLINILKKHRTFQKENKLKYGEYYSNSNYICTKENGQLITTSSLKY 305 Query: 272 WFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330 + + ++ + H +R AT+ + GA ++ G + TY+ + + Sbjct: 306 LSRVVNYELLIDFNFHALRHTHATMLLEGGANFKDIQKRLGHSKLSTTMDTYSHVTN--K 363 Query: 331 LGIKNSRRISSVVDSD 346 + + ++ + Sbjct: 364 ITTDTVNILEKIIADN 379 >gi|168186645|ref|ZP_02621280.1| phage integrase [Clostridium botulinum C str. Eklund] gi|169295376|gb|EDS77509.1| phage integrase [Clostridium botulinum C str. Eklund] Length = 393 Score = 136 bits (341), Expect = 6e-30, Method: Composition-based stats. Identities = 50/373 (13%), Positives = 118/373 (31%), Gaps = 56/373 (15%) Query: 9 PFVTKERTRHGKIIYYFR--KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 V K R YYF K G+ ++ +T A S + + Sbjct: 3 GGVYK---RGSSWYYYFNVCKEEGKYKKVCRKGGATKKEAETSLRKALNEYESTGSIKKD 59 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVES 125 ++ + + + +L + ++ + II + G++ + ++ ++ + S Sbjct: 60 TNISVSDYLKYWLEENVKTNLKYRTYTCYKRVIENHIIPQFGNYKLKNLSALELQEFLNS 119 Query: 126 RKHTPSSAI---QFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTE----GIRPWTKE 177 +K + F + K ++ NP L V PK T+ I T + Sbjct: 120 KKKNGYTKNTLGNFYGVLSGSLKMAVHPYGFIKENPMLYVSMPKFNTKQSDEKISVLTID 179 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----------------QNNI 221 ++ Q + GS + + ++GLR S+ C ++ + Sbjct: 180 EVNQILDRFPFGSSFYINVQIAFHTGLRASEVCSLTWDNIAFENKTLTVEKNLLKQGHEW 239 Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK------------------ 263 + + T+ + D + +L + ++ + K Sbjct: 240 CFDTPKTKSSNRTIRIGDTLINILKKHNLWQKENQLRYGKYYAKNTYDFHGKTYTTDLIS 299 Query: 264 -------MNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTV 316 +++ + G+ + H +R AT+ + GA ++ G + Sbjct: 300 TKENGELVSSDSLKYLSRVVNYDLGIKFNFHALRHTHATMLLEGGANIKDIQKRLGHSKL 359 Query: 317 DQAE-TYTKGADR 328 TY+ ++ Sbjct: 360 ATTMDTYSHVTEK 372 >gi|311693653|gb|ADP96526.1| site-specific tyrosine recombinase XerD [marine bacterium HP15] Length = 300 Score = 136 bits (341), Expect = 7e-30, Method: Composition-based stats. Identities = 45/268 (16%), Positives = 90/268 (33%), Gaps = 24/268 (8%) Query: 86 SLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLT 138 L +R ++ S ++ G R + + + + ++ S+A + L+ Sbjct: 21 GLGEKTRQAYRSDLLRLSEWLESQPGKPLLRDVRRTDLLAWMSSGLAQGVKSSTAARRLS 80 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG----SQPRL 194 +R +++ +R+ + +P L ++ P+ T+ ++ S G + + Sbjct: 81 GLRRFYRFLLREGLITEDPTLRIDSPRLPRRLPDSLTEGEVDALLSEPDPGIAIELRDKA 140 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIG-- 251 E L GLR S+ V + ++ V L + + L Sbjct: 141 MLEILYGCGLRVSELTELRVDQVNLRQGVVRITGKGDKERLVPLGEEAVDWLLQYMKEGR 200 Query: 252 --------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301 + F N M F K A + G+ K S H +R AT + G Sbjct: 201 PELLKGRSCDALFPGNRAAAMTRQTFWHRIKHYAVRVGIRKHLSPHTLRHAFATHLLNHG 260 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRI 329 A + G + + YT A + Sbjct: 261 ADLRVVQMLLGHSDLSTTQIYTHVARQR 288 >gi|149177593|ref|ZP_01856195.1| integrase/recombinase [Planctomyces maris DSM 8797] gi|148843573|gb|EDL57934.1| integrase/recombinase [Planctomyces maris DSM 8797] Length = 313 Score = 136 bits (341), Expect = 7e-30, Method: Composition-based stats. Identities = 46/287 (16%), Positives = 93/287 (32%), Gaps = 26/287 (9%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVE 124 L I + + + + + S+ + ++ + +I +R V Sbjct: 12 LHDAIDHFLRYLQIERNSSDLTLKSYAEDLESLVEYLTEYEGALLPPDQIGISELRRYVA 71 Query: 125 SRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + ++ + L +R F++ R+ Y NP + P+ + T + + Sbjct: 72 YLHECQYEKTTIARRLACLRSFFRYCCREGYSKTNPAKPLRTPRTGRKLPHFLTTDQIGT 131 Query: 182 FKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE 236 G + R E L +GLR S+ V + I+ K Sbjct: 132 LLEAPPANQKMGLRDRAILETLYSAGLRVSELVALNVSDWDQDANIIRVLGKGRKERIAP 191 Query: 237 LPDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284 + K L + F+N K ++ + + + G++K Sbjct: 192 IGSFAAKALTHWLEEREAKPGAHPDSDALFLNRLKTRLTSRSVGRMLEKYLLQTGLDKKT 251 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 S H +R AT D GA + G K++ + YT + + L Sbjct: 252 SPHTLRHTFATHLLDGGADLRSVQELLGHKSLTTTQIYTHVSTKRLL 298 >gi|303236823|ref|ZP_07323402.1| tyrosine recombinase XerD [Prevotella disiens FB035-09AN] gi|302482991|gb|EFL46007.1| tyrosine recombinase XerD [Prevotella disiens FB035-09AN] Length = 318 Score = 136 bits (341), Expect = 7e-30, Method: Composition-based stats. Identities = 48/271 (17%), Positives = 98/271 (36%), Gaps = 24/271 (8%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY--RKITTKHIRSGVE---SRKHTP 130 Y K + N+ ++ +++++ + + ++I + Sbjct: 26 QRYLKLEKA--YSANTLDAYMRDVEKLLKYLANEKINPEEAKLENIENFAAAVGDLGIGA 83 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---- 186 S + L+ +R F++ V + Y+ +P +E PK+ + E++ ++ Sbjct: 84 RSLARILSGVRQFFRYLVLEGYIEADPTELLESPKQPQHLPEVLSTEEVDSLENAIDLSK 143 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLL 245 EG + + E L GLR S+ + +L + ++ V + +K L Sbjct: 144 WEGHRNKAIIEVLFSCGLRVSELTNLKLSNLYADEQFVRVMGKGSKERLVPISPRALKEL 203 Query: 246 AMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFS 293 I + I N + T I K A +AG+ K+ H +R Sbjct: 204 NFWFIDRNQMKIKEGEEDFVFLNRRGAHLTRTMILIMIKKYAQEAGIKKTISPHTLRHSF 263 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324 AT + GA + A G +++ E YT Sbjct: 264 ATALLEGGADLRAIQAMLGHESIGTTEIYTH 294 >gi|149372788|ref|ZP_01891809.1| site-specific recombinase [unidentified eubacterium SCB49] gi|149354485|gb|EDM43050.1| site-specific recombinase [unidentified eubacterium SCB49] Length = 299 Score = 136 bits (341), Expect = 7e-30, Method: Composition-based stats. Identities = 54/294 (18%), Positives = 102/294 (34%), Gaps = 29/294 (9%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR----KITTKHIRSGVES 125 TLK + +Y + L+ N+ ++ ++ + + + I+ K I+ + Sbjct: 6 TLK-MYKDYLRIE--RGLSDNTIANYALDILKLTKWLEENEMAISPIDISEKTIQEFIYE 62 Query: 126 RKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ--- 180 T PSS + ++ ++ F + V +EY NP +E PK + +++++ Sbjct: 63 IAKTVAPSSQSRVISGLKGFFNYLVFEEYRTTNPLELMESPKIGRKLPDTLSEKEIDLLI 122 Query: 181 -QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELP 238 + +G + R E L GLR S+ + L F T K V + Sbjct: 123 SEIDLSSPQGERNRAILETLYGCGLRVSEIINLKISDLFFEEGFIKVTGKGDKERFVPIG 182 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMN-----------ATQFSIWFKAKATKAGVNK--S 285 D +K + + + K K G+ K S Sbjct: 183 DNTIKFINIYRNEIRVHEPIKPEASDTLFLNRRGKGLTRAMIFTIIKRLLEKTGIQKNVS 242 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 H R AT + GA + G +++ E YT D+ L + + Sbjct: 243 PHTFRHSFATHLLERGADLRAIQQMLGHESITTTEIYTH-IDKSHL-TEVIHKF 294 >gi|269926944|ref|YP_003323567.1| integrase family protein [Thermobaculum terrenum ATCC BAA-798] gi|269790604|gb|ACZ42745.1| integrase family protein [Thermobaculum terrenum ATCC BAA-798] Length = 310 Score = 136 bits (341), Expect = 7e-30, Method: Composition-based stats. Identities = 46/275 (16%), Positives = 104/275 (37%), Gaps = 27/275 (9%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSG------V 123 + E+ + N+ ++++ Q D + +T+ I+ Sbjct: 8 VEEFISHLESERHFSNNTTAAYKNDILQFHDWLQGKDHINSWAAVTSSDIQDYLLYLKGN 67 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + R + PS+ + + +++ F++ V + V NP + P+ + + + +++ Sbjct: 68 QDRAYAPSTQARKMAAIKSFFQFLVAKSVVDQNPASDLISPRVQKYWPKAISVQEVNMLL 127 Query: 184 SF-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 + EG + R E L +GLR S+ V + + +K G V L Sbjct: 128 AAASDSETPEGIRDRAMLEVLYRTGLRVSELVSLNVDDINLDESHLKCIGRGKTRKVPLS 187 Query: 239 DGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAH 287 + +L + ++ F+N+ Q++ F + KA A++AG+ + H Sbjct: 188 QPAVDVLKLYLERSRPLLVRGQDEQALFVNHRGQRLTRQGFWLILKAYASEAGIKGITPH 247 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 +R A D G ++ G ++ + Y Sbjct: 248 TLRHSFAAHMIDGGIDLRQVQEWLGHASITTTQVY 282 >gi|320323174|gb|EFW79263.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. glycinea str. B076] gi|320329555|gb|EFW85544.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. glycinea str. race 4] Length = 298 Score = 136 bits (341), Expect = 7e-30, Method: Composition-based stats. Identities = 52/281 (18%), Positives = 103/281 (36%), Gaps = 24/281 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR---K 127 LI + + L+ N+R S+ S + D + I + R Sbjct: 8 LIDRFLDALWLEKGLSDNTRDSYRSDLALFNGWLQERNVDLPSAGREVILDHLAWRVENA 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 + P S +FL+ R +++ +R++ ++++P L ++ P+ + ++ D++ + Sbjct: 68 YKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADVEALLAAPD 127 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 G + R E L GLR ++ ++ + ++ V + + + Sbjct: 128 LSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEEAI 187 Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290 + G F + +M F K +AT AG+ KS H +R Sbjct: 188 VWVERYLRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGIGKSLSPHTLR 247 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 AT + GA + G + + YT A R RL Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHLA-RARL 287 >gi|290476402|ref|YP_003469307.1| site-specific tyrosine recombinase [Xenorhabdus bovienii SS-2004] gi|289175740|emb|CBJ82543.1| site-specific tyrosine recombinase [Xenorhabdus bovienii SS-2004] Length = 318 Score = 136 bits (341), Expect = 7e-30, Method: Composition-based stats. Identities = 45/280 (16%), Positives = 90/280 (32%), Gaps = 24/280 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GD--FDYRKITTKHIRSGVESRK 127 LI ++ + LA N+ S+ + G I + + Sbjct: 27 LIEQFLDTIWLEKDLAENTLSSYRLDLQALNNWLVYSGHDLLSVESIELQLFLAERVDSG 86 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFK 183 + SS+ + L++MR LF++ R++ +P + PK + +++ + Sbjct: 87 YKASSSARLLSAMRRLFQYLYREKMRLDDPTALLSAPKLPKRLPKDLSEKQVGDLLNTPL 146 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 + + + E L GLR S+ + + ++ V L + + Sbjct: 147 TDQPIELRDKAMLEVLYACGLRVSELVGLTLSDMSLRQGVVRVVGKGNKERLVPLGEEAL 206 Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289 L + F + +M F K A +G++ S H + Sbjct: 207 YWLEKYLEYGRPWLLNGSASDVFFPSKRGTQMTRQTFWHRIKHYAVLSGIDTERLSPHVL 266 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + GA + G + + YT A Sbjct: 267 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTYVATER 306 >gi|320354502|ref|YP_004195841.1| tyrosine recombinase XerC [Desulfobulbus propionicus DSM 2032] gi|320123004|gb|ADW18550.1| tyrosine recombinase XerC [Desulfobulbus propionicus DSM 2032] Length = 303 Score = 136 bits (341), Expect = 7e-30, Method: Composition-based stats. Identities = 44/303 (14%), Positives = 103/303 (33%), Gaps = 36/303 (11%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIRSGVESRKHTP 130 L+ + + + ++ ++ + R G IT+ +++ V S + Sbjct: 3 DLVERFVRWLLVEKGYSPHTADGYQRDLLEFQRFCGGVLSPESITSSLVQAFVGSLYASN 62 Query: 131 SSAI--QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +SA + L+++R F++ +R++ + +P + PK T +++ + Sbjct: 63 ASASVARKLSALRTFFRFLLREKVIESDPVAGIVGPKLGHALPAFLTVDEVFSLLETPAT 122 Query: 189 GSQ----PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243 + R E L +G+R ++ + + ++ + V + Sbjct: 123 SDRYWRRDRAVMEVLYATGMRVAELVGCNREDVDLAAEMVRVRGKGRKERLVPFGRAAHE 182 Query: 244 LLAMTPIGKETFFINNDKQ----------------KMNATQFSIWFKAKATKAGV--NKS 285 L +E I ++ +++A + A +AG+ + Sbjct: 183 ALEQYLPEREALCIARVQRGRKPEQRALFLNGRGTRLSARSVERSIQTYALRAGIGVTVT 242 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345 H +R AT + GA + G ++ + YT N +S V D Sbjct: 243 PHALRHSFATHLLEMGADLRTVQELLGHVSLSTTQKYTHI---------NIDHLSKVYDQ 293 Query: 346 DDP 348 P Sbjct: 294 AHP 296 >gi|90961925|ref|YP_535841.1| XerC/CodV family integrase/recombinase [Lactobacillus salivarius UCC118] gi|90821119|gb|ABD99758.1| Integrase/recombinase, XerC/CodV family [Lactobacillus salivarius UCC118] gi|300214646|gb|ADJ79062.1| Integrase/recombinase, XerC/CodV family [Lactobacillus salivarius CECT 5713] Length = 298 Score = 136 bits (341), Expect = 7e-30, Method: Composition-based stats. Identities = 35/278 (12%), Positives = 89/278 (32%), Gaps = 26/278 (9%) Query: 74 LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRKH 128 I E++K + + ++ + G +++I + + + + Sbjct: 5 WIEEFKKYLLIEKQYSDETLKAYSEDLQHFVDFIDETGGAKSFKEIGSNDVHAYMSYLYD 64 Query: 129 TP--SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 +S + ++S+R + + ++ E NP V+ + R + +++M Sbjct: 65 RYEMTSISRMISSLRAFYNFLIKNELTDENPFAYVQLKRHPRSLPRFFYEKEMTALFEAT 124 Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGF 241 + + R E L +G+R S+ ++++ + K V Sbjct: 125 EGDTQMLIRDRALLESLYGTGMRVSECTGLKMENVDLTNKKMLLHGKGDKDRLVPFGSYC 184 Query: 242 MKLLAMT------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAH 287 + L + F+N+ + + K ++ ++ H Sbjct: 185 QEALQRYFEQTRTPLMEKYHRDHDLVFVNHYGNPLTPAGVAYILKQIVKRSSLHTSIHPH 244 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 +R AT GA + G ++ + YT Sbjct: 245 ELRHTFATHLMSNGADLRAVQELLGHSSLSTTQIYTHV 282 >gi|237807746|ref|YP_002892186.1| tyrosine recombinase XerD [Tolumonas auensis DSM 9187] gi|237500007|gb|ACQ92600.1| tyrosine recombinase XerD [Tolumonas auensis DSM 9187] Length = 297 Score = 136 bits (341), Expect = 7e-30, Method: Composition-based stats. Identities = 44/281 (15%), Positives = 98/281 (34%), Gaps = 24/281 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESRK 127 LI ++ L+ N+ S+ + ++ + + + Sbjct: 7 LIEQFLDMLWLDRGLSDNTISSYRTDLYKLNDWLDSKASSYLTLDTLLLHAYLAWRIDQG 66 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---- 183 +S + L+++R +++ +R++ A +P ++++ PK + ++E ++ Sbjct: 67 FKATSTARLLSALRRFYQFLIREQLRADDPTVALDSPKLPLRLPKDISEEQVEALLAEPD 126 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 + + E L +GLR S+ + L +N+ ++ V + Sbjct: 127 VQDPIELRDKAMLELLYATGLRVSELVGLQMHQLASNMAYVRVTGKGNKDRLVPTGEEAQ 186 Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290 + F +N Q+M F K A +A + + S H +R Sbjct: 187 YWIQRFMREGRMTLLHEQASDVLFPSNRSQQMTRQTFWHRIKLYAVRANITSDLSPHTLR 246 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 AT + GA + G + + YT A + RL Sbjct: 247 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-QARL 286 >gi|324115011|gb|EGC08976.1| phage integrase [Escherichia fergusonii B253] Length = 392 Score = 136 bits (341), Expect = 7e-30, Method: Composition-based stats. Identities = 55/328 (16%), Positives = 106/328 (32%), Gaps = 19/328 (5%) Query: 18 HGKIIYYFRK---GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK-----KPT 69 G++ Y RK G + + + + A A + K K Sbjct: 50 SGRMSYIVRKNINGKSHYVPIGCGTQFSINEAREKASEIIYSLKRKGKIHGKDYAAIKNM 109 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129 T LI +Y + ++ + + + G +IT I + + Sbjct: 110 TFGQLIDKYEVDVLSTGVKKSANTDRSKIKNYLYPQLGALKVAQITEGDILRYLAGLELK 169 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW------TKEDMQQFK 183 P++ + L ++ LF +AVR +V+ +P ++ T + + + Sbjct: 170 PATRNRHLALIKALFTYAVRMNFVSCSPARYIKALPETTSQRKAMADAQSKSWMEAAIQM 229 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVELPDGF 241 + FL +GLR ++ ++ + + +I + K G + V + D Sbjct: 230 RNGEPDNAALALLVFLALTGLRLGETRYLLLEDIDWSRQTITLRETKNGKLRCVPVGDKA 289 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQF--SIWFKAKATKAGV-NKSAHGVRKFSATISA 298 LL K KAG+ + H +R AT Sbjct: 290 FVLLTEQRQHLGDKGWVFPGYNTTNPVAEPRRLQKRICEKAGISPFTIHEMRHTFATKLI 349 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGA 326 ++GA H + G T+ E Y G+ Sbjct: 350 ESGADIHTIKDLLGHSTIKVTERYLHGS 377 >gi|254471175|ref|ZP_05084577.1| site-specific recombinase, phage integrase family [Pseudovibrio sp. JE062] gi|211959321|gb|EEA94519.1| site-specific recombinase, phage integrase family [Pseudovibrio sp. JE062] Length = 426 Score = 136 bits (341), Expect = 7e-30, Method: Composition-based stats. Identities = 67/338 (19%), Positives = 117/338 (34%), Gaps = 16/338 (4%) Query: 16 TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75 +HGK+ Y RK + A+++ T ++ R P TL LI Sbjct: 14 DQHGKLRCYHRKTGEP---INLEKAPIGSAAFLAECERLTNLMSVADTSR--PGTLGNLI 68 Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSA 133 +YR S+ + LA ++ ++ FD + + + T+ I + + A Sbjct: 69 DKYRASSAFLELADRTKSDYQKVFDYLAP-IHNTPLTRFTSPFIVKLRDKAEEQRKRRFA 127 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193 + VLF W + +V NP L V+ ++ + Sbjct: 128 NYVKQVLSVLFSWGKERGFVKENPALGVKSIRKPKNAPIANRPWTDDERGIVLKHAPPQM 187 Query: 194 L-AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252 + A ++Y+GL D+ Q QN S + KTG + + L P Sbjct: 188 VPALTLMMYTGLGPQDALTLSKQQYQNGFISTRRAKTGAPVFWPVIAPLKAALDDAPDHG 247 Query: 253 ETF-FINNDKQKMNATQFSIWFKAKATKAGVN------KSAHGVRKFSATISADAGATAH 305 N+ Q + F ++ + + +G+R ATI + G Sbjct: 248 APTLCTNSRGQPWTVSGFRASWRKLRIQLEDKNLIKPGLTLYGLRHTVATILREIGLNDR 307 Query: 306 ELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343 +L A G +T A Y KGAD + + R + Sbjct: 308 DLAAALGHETEAMARLYAKGADLRKSMSDIAVRFEKEI 345 >gi|227496090|ref|ZP_03926396.1| tyrosine recombinase [Actinomyces urogenitalis DSM 15434] gi|226834324|gb|EEH66707.1| tyrosine recombinase [Actinomyces urogenitalis DSM 15434] Length = 316 Score = 136 bits (341), Expect = 7e-30, Method: Composition-based stats. Identities = 48/281 (17%), Positives = 95/281 (33%), Gaps = 33/281 (11%) Query: 78 YRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHT---- 129 Y L+ N+ ++E + R G D +T + + +E+ + Sbjct: 18 YLAHLRVERGLSPNTLAAYERDLTRYCRFLLARGVQDLAAVTEADVAAFLEAIRTGDDGG 77 Query: 130 ----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 SSA + +T++R K+ + + ++P +V P+ + + E++Q Sbjct: 78 RALAASSASRTVTAVRGWHKFLLDEGNTDVDPSAAVHPPQVGRRLPKALSVEEVQALLEA 137 Query: 186 WSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239 S + R E L +G R S++ + L I+ K V + Sbjct: 138 ASTDDSPRSLRDRALLELLYATGARISEAVGLVIDDLDRESGCIRLFGKGRKERIVPVGQ 197 Query: 240 GFMKLLAMTPIGKETF-----------FINNDKQKMNATQFSIWFKAKATKAGV----NK 284 L + F+N + ++ + + +AG+ + Sbjct: 198 YAWDALDAYLVQARPVLAAKGRGVPEVFLNTLGRPLSRQSAWGVLRQASARAGLGADKHV 257 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 S H +R AT GA + G +V + YTK Sbjct: 258 SPHTLRHSFATHLLAGGADVRVVQEMLGHASVTTTQIYTKV 298 >gi|319900751|ref|YP_004160479.1| tyrosine recombinase XerD subunit [Bacteroides helcogenes P 36-108] gi|319415782|gb|ADV42893.1| tyrosine recombinase XerD subunit [Bacteroides helcogenes P 36-108] Length = 317 Score = 136 bits (341), Expect = 7e-30, Method: Composition-based stats. Identities = 55/298 (18%), Positives = 105/298 (35%), Gaps = 25/298 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESRKH-- 128 +I +Y + SL+ N+ ++++ ++++R D +T ++ Sbjct: 16 IIRKYNQYLRLEKSLSPNTLDAYQTDLEKLLRFLEDEKIDILAVTLDDLQRFTAGLHDIG 75 Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---- 183 P S + L+ ++ F + V Y+ +P +E PK + T E++ + Sbjct: 76 IHPRSQARILSGIKSFFHFLVLAGYLENDPSELLEGPKIGFKLPEVLTVEEIDRIIAAID 135 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFM 242 +EG + R E L GLR S+ C + L N F K V + + Sbjct: 136 MNTNEGQRNRAILETLYSCGLRVSELCNLKISDLYFNEGFIKVEGKGSKQRLVPISHRAI 195 Query: 243 KLLAMTPIGKETFFIN-----------NDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289 + ++ + ++ + K A KAG+ KS H Sbjct: 196 TEITNWLDDRKERWKIKKDFEDYVFLARWGNGISRIMIFHFIKELAEKAGITKSISPHTF 255 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347 R AT + GA + G +++ E YT DR L + + + Sbjct: 256 RHSFATHLLEGGANLRAIQCMLGHESIATTEIYTH-IDRNMLRSEIIEHHPRNIKYRE 312 >gi|309775658|ref|ZP_07670657.1| integrase/recombinase XerD [Erysipelotrichaceae bacterium 3_1_53] gi|308916564|gb|EFP62305.1| integrase/recombinase XerD [Erysipelotrichaceae bacterium 3_1_53] Length = 304 Score = 136 bits (341), Expect = 7e-30, Method: Composition-based stats. Identities = 44/297 (14%), Positives = 99/297 (33%), Gaps = 31/297 (10%) Query: 72 KWLISEYRKSAHWGSL-AVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRK 127 + L++ + + + +V++R +++ + I G + + + + + S + Sbjct: 2 EELLARFLQYMDSLNSGSVHTRDAYQRDIREFISFLQAEGVEELQDADRILVMNYIASLR 61 Query: 128 --------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 S+ + L+S+R +++ +A NP L + PKR ++M Sbjct: 62 EKSGVSGEMKNSTIARKLSSLRSFYRYLNEYVGIAQNPFLYFKTPKRSKRIPEFLFYDEM 121 Query: 180 QQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 F S + +G + R FE + GLR S++ ++ + + G + Sbjct: 122 DTFLSSFALDTPDGLRDRAMFELMYACGLRVSEAASLRLRDIDLQERILTITGKGNKQRI 181 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKM------------NATQFSIWFKAKAT--KAG 281 L + + Q+ + A K Sbjct: 182 VPFYALAGELVERYLQQVRPLWMQPSQEHDIVFINQRGKGLTTRGIQYRMQVAAAGCKLQ 241 Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337 V+ H R AT D GA + G ++ + Y +R++ ++ Sbjct: 242 VHVHPHMFRHSFATHLLDNGADLRVVQELLGHSSLSTTQVYVHVTQERLKKAYTHAH 298 >gi|330894535|gb|EGH27196.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. mori str. 301020] Length = 298 Score = 136 bits (341), Expect = 8e-30, Method: Composition-based stats. Identities = 52/291 (17%), Positives = 105/291 (36%), Gaps = 24/291 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR---K 127 LI + + L+ N+R S+ S + D + I + R Sbjct: 8 LIDRFLDALWLEKGLSDNTRESYRSDLALFNGWLQERNVDLPSAGREVILDHLAWRVENA 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + P S +FL+ R +++ +R++ + ++P L ++ P+ + ++ D++ + Sbjct: 68 YKPRSTARFLSGARGFYRYLLREKLITLDPTLQIDMPQLGKPLPKSLSEADVEALLAAPD 127 Query: 188 E----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 G + R E L GLR ++ ++ + ++ V + + + Sbjct: 128 LSEPTGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEEAI 187 Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290 + G F + +M F K +AT AG+ KS H +R Sbjct: 188 VWVERYLRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGIGKSLSPHTLR 247 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 AT + GA + G + + YT A R RL +++ Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQEMHAKHHPR 297 >gi|70728483|ref|YP_258232.1| site-specific tyrosine recombinase XerD [Pseudomonas fluorescens Pf-5] gi|68342782|gb|AAY90388.1| tyrosine recombinase XerD [Pseudomonas fluorescens Pf-5] Length = 298 Score = 135 bits (340), Expect = 8e-30, Method: Composition-based stats. Identities = 49/291 (16%), Positives = 105/291 (36%), Gaps = 24/291 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRK 127 LI + + L+ N+R ++ S + + + Sbjct: 8 LIDRFLDALWLEKGLSDNTRDAYRSDLALFNGWLQEQGLELPRAGRELILDHLAWRVEQA 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + P S +FL+ +R +++ +R++ + I+P L ++ P+ + ++ D++ + Sbjct: 68 YKPRSTARFLSGVRGFYRYLLREKLIEIDPTLQIDMPQLGRPLPKSLSEADVEALLAAPD 127 Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------- 232 G + R E L GLR ++ ++ + ++ G+ Sbjct: 128 LSEAIGQRDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEEAI 187 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 + VE + + + F + ++M F K +A AG+ K S H +R Sbjct: 188 VWVERYMRDARAELLGGRPSDVLFPSLRGEQMTRQTFWHRIKHQAKVAGIGKALSPHTLR 247 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 AT + GA + G + + YT A R RL +++ Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQDLHAKHHPR 297 >gi|113969139|ref|YP_732932.1| tyrosine recombinase XerD [Shewanella sp. MR-4] gi|113883823|gb|ABI37875.1| tyrosine recombinase XerD [Shewanella sp. MR-4] Length = 300 Score = 135 bits (340), Expect = 8e-30, Method: Composition-based stats. Identities = 45/281 (16%), Positives = 97/281 (34%), Gaps = 24/281 (8%) Query: 74 LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKI-----TTKHIRSGVESRK 127 LI + L+ N+ ++ + R R I + + ++ Sbjct: 10 LIDAFLDDLWSSKGLSDNTLSAYRTDLRHFDRYQQSQGLRLIEVVQADVRAYLAYRVEQQ 69 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +S+ + L+S+R + + ++ + +A +P +E PK + ++ + + + + Sbjct: 70 FARTSSARLLSSLRRFYTYLLQTKQIAGDPMALIESPKLSRQLPDSLSESQVDRLLAEPN 129 Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVEL----P 238 + + E L +GLR S+ ++ + ++ G V + Sbjct: 130 VDDPVECRDKAMLELLYATGLRVSELVGLTLEQMSLRQGLVRIVGKGGKERLVPMGELAI 189 Query: 239 DGFMKLLAMTPIGKETFFINNDKQK------MNATQFSIWFKAKATKAGVN--KSAHGVR 290 + L+ ++ M F K A++AG+ S H +R Sbjct: 190 TEVERYLSSARHELLGNVQSDVVFPSKRSQMMTRQTFWHRIKLYASRAGIETELSPHTLR 249 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 AT + GA + G + + YT A R RL Sbjct: 250 HAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVA-RARL 289 >gi|291288449|ref|YP_003505265.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809] gi|290885609|gb|ADD69309.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809] Length = 397 Score = 135 bits (340), Expect = 8e-30, Method: Composition-based stats. Identities = 49/338 (14%), Positives = 106/338 (31%), Gaps = 16/338 (4%) Query: 21 IIYYFRKGHGRRIRLPYPHES--TFIPAYMSALTGSTPKRE-----YINSPRKKPTTLKW 73 + +R GR+ + S T A A T T + ++K Sbjct: 47 YVIRYRNEEGRQKVMTLFRASNITADEARRKARTKLTEAQGGTDILKEKQEKRKAMLFSE 106 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESR-KHTPS 131 Y + + + + + ESY ++ I+ G+ + IT + K TP Sbjct: 107 FAEIYLEHHARPNNSAGTVKTNESYLERLILPAFGNRPLKSITPEDTAKLHHKIGKSTPV 166 Query: 132 SAIQFLTSMRVLFKWAVRQEYVA-----INPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 A + +R +F A Y+ + + TK + + Sbjct: 167 QANRVHALLRKMFTLAETWRYIPQNTNPCVHTQKYKETPVQRFLTPDETKRLEDVLEKYE 226 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246 + LA L+Y+G R + ++++N + + K+ T + + Sbjct: 227 EKYYSAVLALRLLMYTGCRKEEILTLKWENIKNELNLLHIPKSKTGEKNVPVSHEVLDML 286 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAH 305 + + ++ +AG+ + H +R A+ + G Sbjct: 287 ENAYKVNEYVCFGKFENSRLIGLQKIWERLRKEAGLEDVRIHDLRHSFASTAISGGINIE 346 Query: 306 ELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343 + G K + E Y L + + +I++ + Sbjct: 347 FISKLLGHKRITTTEYYYAHVQNDPL-HEAANKIATSI 383 >gi|269103442|ref|ZP_06156139.1| site-specific recombinase XerD [Photobacterium damselae subsp. damselae CIP 102761] gi|268163340|gb|EEZ41836.1| site-specific recombinase XerD [Photobacterium damselae subsp. damselae CIP 102761] Length = 298 Score = 135 bits (340), Expect = 8e-30, Method: Composition-based stats. Identities = 37/280 (13%), Positives = 95/280 (33%), Gaps = 24/280 (8%) Query: 74 LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDY--RKITTKHIRSGVESR---K 127 +I + + L+ N+ S+ + +++ + I+ ++ + Sbjct: 7 VIERFLDAMWMERGLSENTLASYRNDLTKLMMWMKEHKLVLESISADDLQRYQQWLFDQD 66 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + +S + ++++R +F++ R++ +P + PK + ++ + + Sbjct: 67 YKQTSRARMVSAIRRVFQYLHREKIRVDDPSAMLISPKLPKRLPKDISEAQVDALLDAPN 126 Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 + + E L +GLR ++ ++++ ++ V + + + Sbjct: 127 VDDPIELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVVGKGDKERLVPMGENAV 186 Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289 + F + Q+M F K A AG++ S H + Sbjct: 187 DWIEQFLAQGRPMLLGEKSSDVVFPSKRAQQMTRQTFWHRIKHYAVLAGIDADTLSPHVM 246 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + GA + G + + YT A Sbjct: 247 RHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER 286 >gi|256424447|ref|YP_003125100.1| tyrosine recombinase XerD [Chitinophaga pinensis DSM 2588] gi|256039355|gb|ACU62899.1| tyrosine recombinase XerD [Chitinophaga pinensis DSM 2588] Length = 316 Score = 135 bits (340), Expect = 8e-30, Method: Composition-based stats. Identities = 46/287 (16%), Positives = 100/287 (34%), Gaps = 31/287 (10%) Query: 75 ISEYRKSAHW-----GSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIR---SG 122 Y K SL+ NS ++ +++++ +++ ++ Sbjct: 20 WDAYLKGFRSYLQLERSLSANSIEAYLRDVEKLVQYLQSVNIQPPPDQVSLSDLQSCVRW 79 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + + T +S + ++ ++ +++ ++ V +P + +E PK K + + E+++Q Sbjct: 80 IATLGMTATSQARIISGIKAFYRYLALEDVVRQDPTILLEAPKTKRQLPDVLSFEEIEQI 139 Query: 183 KSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVEL 237 G+ + R E + GLR S+ + L + I+ V + Sbjct: 140 IGQIKAGTPEGQRNRAILETMYSCGLRVSEVTNLQISQLHFDAGFIRVVGKGDKERLVPI 199 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKM-----------NATQFSIWFKAKATKAGVNK-- 284 +K + + Q+ + K AG++K Sbjct: 200 GSDAVKYINIYKDEVRVHVPVKKGQEDILFLNRRGSALTRVMIFLVIKELTAAAGIDKQV 259 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 S H R AT + GA + G +++ E YT DR L Sbjct: 260 SPHTFRHSFATHLVEGGADLRAVQEMLGHESITTTEIYTH-LDREYL 305 >gi|168702641|ref|ZP_02734918.1| integrase/recombinase [Gemmata obscuriglobus UQM 2246] Length = 321 Score = 135 bits (340), Expect = 8e-30, Method: Composition-based stats. Identities = 43/283 (15%), Positives = 86/283 (30%), Gaps = 29/283 (10%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-------TKHIRSGVESR 126 +Y +S LA N+ +++ + T ++ E + Sbjct: 12 AFRDYIQSE--RGLAENTLLAYGRDLARYAHWVEQVQLPDYTHPTLKHLAAYVAFLHEEQ 69 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 P S + L ++++ +++ +E + + P + ++ + Sbjct: 70 LAAP-SIARHLVALKMFYRFLQLEERASATTVNLLSSPNLWERVPQVLPPPAVETLITAP 128 Query: 187 SEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 G + R E L +G R S+ + + + K V L Sbjct: 129 QPGDRFHLRDRAMLEVLYATGCRASEVVNLKLNDVYLDSGFCKCVGKGSKQRVVPLNRHA 188 Query: 242 MKLLAMT-----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHG 288 + L G E F + + + K +AG+ K+ H Sbjct: 189 VTALRAYLGGGVDEGGRPAAGPEVVFTSKTGRPLTRIHLWALVKKYCKRAGLPKTVSPHT 248 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +R AT GA + G ++ + YT DR RL Sbjct: 249 LRHSFATHLLSGGADLRTVQELLGHASIATTQIYTH-VDRDRL 290 >gi|288926604|ref|ZP_06420520.1| integrase/recombinase XerD [Prevotella buccae D17] gi|288336626|gb|EFC74996.1| integrase/recombinase XerD [Prevotella buccae D17] Length = 304 Score = 135 bits (340), Expect = 8e-30, Method: Composition-based stats. Identities = 46/290 (15%), Positives = 100/290 (34%), Gaps = 25/290 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVESRK 127 + Y + + + N+ ++ ++ + + + + + + Sbjct: 11 IAKAYLRYLKLERNYSENTVEAYRHDLGYLMAFLKERGLAAVDAELSDMEEFAATLHEKN 70 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 + S + L+ +R +++ Y+ +P + P+ + E++ + Sbjct: 71 VSARSQSRILSGVRSFYRFLRLDGYMETDPTELLGSPQTGEHLPEYLSTEEVDLLEGSID 130 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------- 232 EG + + E L GLR S+ L ++ G Sbjct: 131 LSKWEGQRNKAIIEVLFSCGLRVSELVNLKFSDLFPEEKFVRVIGKGNKERLVPISSSAL 190 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290 +EL L+ + P ++ F+N + T I K +A AG+ K+ H +R Sbjct: 191 RQLELWYMDRNLMTIKPGEEDYVFLNRRGHHLTRTMILIMIKRQAVAAGIKKTISPHTLR 250 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK--GADRIRLGIKNSRR 338 AT GA + A G +++ E YT +D R +++ R Sbjct: 251 HSFATALLKGGADLRAIQAMLGHESIGTTEVYTHLETSDLRREILEHHPR 300 >gi|312872353|ref|ZP_07732423.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF 2062A-h1] gi|312873924|ref|ZP_07733960.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF 2052A-d] gi|329921329|ref|ZP_08277767.1| putative tyrosine recombinase XerC [Lactobacillus iners SPIN 1401G] gi|311090473|gb|EFQ48881.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF 2052A-d] gi|311092176|gb|EFQ50550.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF 2062A-h1] gi|328934621|gb|EGG31125.1| putative tyrosine recombinase XerC [Lactobacillus iners SPIN 1401G] Length = 307 Score = 135 bits (340), Expect = 9e-30, Method: Composition-based stats. Identities = 36/283 (12%), Positives = 92/283 (32%), Gaps = 26/283 (9%) Query: 72 KWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIR---SGV 123 + Y + ++N+ ++ + G D+ K++++ I + Sbjct: 5 DDFLKLYYNYLKNERNYSINTCKAYMDDLSEARTFFVENGGFIDWLKLSSRDIEIFIQYL 64 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 +K+ S+ + ++++R +++ ++ + +NP + ++M + Sbjct: 65 AQKKYKRSTQSRKISTLRSFYRFLNKRNIIPVNPVELISLRGDHKNLPEFLYSDEMVKVL 124 Query: 184 S----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238 G + E +G+R S+ + + + I K V Sbjct: 125 KSISTTTPLGLRNMALLELFYATGMRVSEIANLKLDQVDFELNLILVHGKGNKDRYVAFG 184 Query: 239 DGFMKLLAM-----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-- 285 + L F+N++ + + K AG++ S Sbjct: 185 EEAKTALNNYLVEARKKLLLHKTDYGYVFLNSNGNMITSRGLEYIIKNIFLNAGISASVH 244 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 H +R AT + GA + G +++ + YT + Sbjct: 245 PHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTHVTKQ 287 >gi|288559967|ref|YP_003423453.1| tyrosine recombinase XerC [Methanobrevibacter ruminantium M1] gi|288542677|gb|ADC46561.1| tyrosine recombinase XerC [Methanobrevibacter ruminantium M1] Length = 326 Score = 135 bits (340), Expect = 9e-30, Method: Composition-based stats. Identities = 41/278 (14%), Positives = 87/278 (31%), Gaps = 31/278 (11%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESR 126 + ++ Y + + N+ ++ S +I G +D RK + + + Sbjct: 39 FEEMLENYIIEMEIRNYSENTVKTYSSIIRSMIDYMSSEEGVYDGRKFLACFKKYIRDLK 98 Query: 127 KHTPSSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 K S + ++ I V+ PKR + T+++++ Sbjct: 99 KDQDVSQNYIYLNTVVCKKFLEFND------IYFLEDVQNPKRTKSLPKSLTEKEVKSLI 152 Query: 184 SFWSEGS-----------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GT 231 + ++ EFL +GLR S+ + + + + +I+ + Sbjct: 153 DAVQITDEDSELKKKAKMRDKVILEFLYSTGLRISELVKLQKKDIDFDERTIRVRGKGEK 212 Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKM----NATQFSIWFKAKATKAGVNK--S 285 V + L+ + K + K A KAG+ K + Sbjct: 213 DRIVLFDENTRDLIDNYIETQNQKSEYLFINKNGRKLTPRYVQMMIKEYAEKAGIKKKVT 272 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 H +R AT G + G ++ + YT Sbjct: 273 PHVLRHSFATHLLKNGVDIRVIQQLLGHSSLSTTQIYT 310 >gi|227890941|ref|ZP_04008746.1| site-specific recombinase XerD [Lactobacillus salivarius ATCC 11741] gi|227867350|gb|EEJ74771.1| site-specific recombinase XerD [Lactobacillus salivarius ATCC 11741] Length = 298 Score = 135 bits (340), Expect = 9e-30, Method: Composition-based stats. Identities = 35/278 (12%), Positives = 88/278 (31%), Gaps = 26/278 (9%) Query: 74 LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRKH 128 I E++K + + ++ + G +++I + + + + Sbjct: 5 WIEEFKKYLLIEKQYSDETLKAYSEDLQHFVDFIDETGGAKSFKEIGSNDVHAYMSYLYD 64 Query: 129 TP--SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 +S + ++S+R + + ++ E NP V+ + R + +++M Sbjct: 65 RYEMTSISRMISSLRAFYNFLIKNELTDENPFAYVQLKRHPRSLPRFFYEKEMTALFEAT 124 Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGF 241 + + R E L +G+R S+ ++ + + K V Sbjct: 125 EGDTQMLIRDRALLESLYGTGMRVSECTGLKMESVDLTNKKMLLHGKGDKDRLVPFGSYC 184 Query: 242 MKLLAMT------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAH 287 + L + F+N+ + + K ++ ++ H Sbjct: 185 QEALQRYFEQTRTPLMEKYHRDHDLVFVNHYGNPLTPAGVAYILKQIVKRSSLHTSIHPH 244 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 +R AT GA + G ++ + YT Sbjct: 245 ELRHTFATHLMSNGADLRAVQELLGHSSLSTTQIYTHV 282 >gi|237800088|ref|ZP_04588549.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022943|gb|EGI03000.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. oryzae str. 1_6] Length = 298 Score = 135 bits (340), Expect = 9e-30, Method: Composition-based stats. Identities = 52/291 (17%), Positives = 106/291 (36%), Gaps = 24/291 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKI--TTKHIRSGVESR---K 127 LI + + L+ N+R S+ S + + + I + R Sbjct: 8 LIDRFLDALWLEKGLSDNTRDSYRSDLALFNGWLQERNVDLPVAGREVILDHLAWRVENA 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 + P S +FL+ R +++ +R++ +A++P L ++ P+ + ++ D++ + Sbjct: 68 YKPRSTARFLSGARGFYRYLLREKLIAVDPTLQIDMPQLGKPLPKSLSEADVEALLAAPD 127 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 G + R E L GLR ++ ++ + ++ V + + + Sbjct: 128 LSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEEAI 187 Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290 + G F + +M F K +AT AG+ KS H +R Sbjct: 188 VWVERYMRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGIGKSLSPHTLR 247 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 AT + GA + G + + YT A R RL +++ Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQEMHAKHHPR 297 >gi|157828362|ref|YP_001494604.1| site-specific tyrosine recombinase XerD [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933070|ref|YP_001649859.1| site-specific tyrosine recombinase XerD [Rickettsia rickettsii str. Iowa] gi|157800843|gb|ABV76096.1| tyrosine recombinase [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908157|gb|ABY72453.1| integrase/recombinase (XerD/RipX family) [Rickettsia rickettsii str. Iowa] Length = 306 Score = 135 bits (340), Expect = 9e-30, Method: Composition-based stats. Identities = 49/287 (17%), Positives = 100/287 (34%), Gaps = 35/287 (12%) Query: 73 WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRK--ITTKHIRSGVESRKH- 128 I+++ + +L+ NS +S++ + ITT++IR +E Sbjct: 2 EFIAQFLEMLLAERALSKNSILSYKRDLFDFQNYLAKHKLSELNITTENIRDWIEYLASN 61 Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 S + +++++ +++ + + + A NP L+V+ PK + + + ++ Sbjct: 62 DLQARSINRKISTIKSYYEFLISENHTAFNPVLNVDLPKYQNKLPEILSIAQIKSLLEHC 121 Query: 187 -----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--------QNNIFSIKTQKTGTII 233 EG + L SGLR S+ + + + K Sbjct: 122 SQDNSPEGIRLNAMIHLLYASGLRVSELVSLKLADILTNKTSKGEVRKIFSVLGKGNKER 181 Query: 234 TVELPDG----FMKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWFKAKATKA 280 + + + K LA+ + N M F+I K+ A A Sbjct: 182 VIVINEQAVISIAKYLAIRDVFVNKAKPRNLIYLFPSSALAGYMTRQNFAILLKSAALYA 241 Query: 281 GVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 G+N S H +R A+ + GA + G + + YT Sbjct: 242 GLNPEYISPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTH 288 >gi|311068948|ref|YP_003973871.1| site-specific tyrosine recombinase XerD [Bacillus atrophaeus 1942] gi|310869465|gb|ADP32940.1| site-specific tyrosine recombinase XerD [Bacillus atrophaeus 1942] Length = 296 Score = 135 bits (340), Expect = 9e-30, Method: Composition-based stats. Identities = 39/269 (14%), Positives = 97/269 (36%), Gaps = 24/269 (8%) Query: 85 GSLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVESRKHTPS---SAIQFL 137 L+ N+ +S+E + + ++T HI ++ K + ++ + L Sbjct: 16 RGLSQNTMMSYERDLKSYSLFLTETLQVTSWNEVTRIHIIQYLKHLKDSGKSGKTSARHL 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193 S+R ++ +R++ +P + +E K + + + ++++ G + + Sbjct: 76 ASIRSFHQFLLREKVTDKDPSVHIETQKTERTLPKVLSLKEVELLLDTPKLTSPFGYRDK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT---- 248 E L +G+R S+ + ++ ++ V + + + Sbjct: 136 AMLELLYATGIRVSEMIDLKTSDVHLSMGFVRCFGKGRKERIVPIGETAAHAIEEYLAKA 195 Query: 249 ------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 + F+N+ ++++ F K A +AG+ K + H +R AT + Sbjct: 196 RGKLLKKNVSDALFLNHHGKQISRQGFWKNLKKIALEAGIKKELTPHTLRHSFATHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329 GA + G + + YT Sbjct: 256 GADLRAVQEMLGHADISTTQIYTHVTKTR 284 >gi|308050773|ref|YP_003914339.1| tyrosine recombinase XerD [Ferrimonas balearica DSM 9799] gi|307632963|gb|ADN77265.1| tyrosine recombinase XerD [Ferrimonas balearica DSM 9799] Length = 295 Score = 135 bits (340), Expect = 9e-30, Method: Composition-based stats. Identities = 44/283 (15%), Positives = 93/283 (32%), Gaps = 24/283 (8%) Query: 72 KWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVES 125 + +I + L+ N+ ++ S + + D + + + +S Sbjct: 4 EQIIERFCDDLWAQRGLSDNTLAAYRSDLCRFAEFLSERDTPLARADSLDIRDYLAHRKS 63 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 +S + L+++R F VR+ +P + +PK + ++ +++ Sbjct: 64 IGAAKTSTARSLSALRRFFADLVRRGEREADPMALIAQPKMDRKLPDSLSEAEVEALLDA 123 Query: 186 WSEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG 240 + + E L +GLR S+ ++ + K G V + + Sbjct: 124 PECDDPIQLRDKAMLELLYATGLRVSELTGLQMEQVSLRQGVVRVVGKGGKERLVPMGEQ 183 Query: 241 FMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHG 288 L + F + +M F K A ++G+ S H Sbjct: 184 AQHQLEVYLREARGMLLGVNRSDVLFPSKRGVQMTRQTFWHRVKFYAQQSGITKPLSPHT 243 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +R AT + GA + G + + YT A + RL Sbjct: 244 LRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVA-QARL 285 >gi|301299347|ref|ZP_07205632.1| tyrosine recombinase XerC [Lactobacillus salivarius ACS-116-V-Col5a] gi|300853087|gb|EFK80686.1| tyrosine recombinase XerC [Lactobacillus salivarius ACS-116-V-Col5a] Length = 298 Score = 135 bits (340), Expect = 9e-30, Method: Composition-based stats. Identities = 35/278 (12%), Positives = 88/278 (31%), Gaps = 26/278 (9%) Query: 74 LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRKH 128 I E++K + + ++ + G +++I + + + + Sbjct: 5 WIEEFKKYLLIEKQYSDETLKAYSEDLQHFVDFIDETGGAKSFKEIGSNDVHAYMSYLYD 64 Query: 129 TP--SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 +S + ++S+R + + ++ E NP V+ + R + +++M Sbjct: 65 RYEMTSISRMISSLRAFYNFLIKNELTDENPFAYVQLKRHPRSLPRFFYEKEMTALFEAT 124 Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGF 241 + + R E L +G+R S+ + ++ + K V Sbjct: 125 EGDTQMLIRDRALLESLYGTGMRVSECTGLKMGNVDLTNKKMLLHGKGDKDRLVPFGSYC 184 Query: 242 MKLLAMT------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAH 287 + L + F+N+ + + K ++ ++ H Sbjct: 185 QEALQRYFEQTRTPLMEKYHRDHDLVFVNHYGNPLTPAGVAYILKQIVKRSSLHTSIHPH 244 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 +R AT GA + G ++ + YT Sbjct: 245 ELRHTFATHLMSNGADLRAVQELLGHSSLSTTQIYTHV 282 >gi|315186395|gb|EFU20155.1| integrase family protein [Spirochaeta thermophila DSM 6578] Length = 312 Score = 135 bits (340), Expect = 9e-30, Method: Composition-based stats. Identities = 50/294 (17%), Positives = 95/294 (32%), Gaps = 32/294 (10%) Query: 74 LISEYRKSA-HWGSLAVNSRISFESYF---DQIIRKSGDFDYRKITTKHIRSGVESR--- 126 LI + H L+ + S+ + + K G D T + IR V Sbjct: 16 LIDRFLAHLSHMRGLSEATVRSYRNDLVKVGAFLEKLG-TDLVSATREDIRHCVAEYTLA 74 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-- 184 + PSS + L+S+R +++ R+ +P + K ++++ + Sbjct: 75 RQAPSSINRMLSSLRSWYRFLRREGVRIDSPMEGISSVKAGKRLPSFLFEDEVDRLLDIE 134 Query: 185 -FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM 242 + R E L +G R + + +Q + + G + L G Sbjct: 135 GSDFASLRDRALLEVLYSTGCRVQELVSLTISGVQVSRGWCVVKGKGGKERLLFLGLGAR 194 Query: 243 KLL------------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288 K L M + F+N + + + +A + G+ K S H Sbjct: 195 KALAAYLPLRQALLERMGRREEGALFVNQKGSPLTTRGVAYIIERRAREKGLEKRISPHV 254 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342 R AT GA + G ++ + YT L + +R+ Sbjct: 255 FRHSFATHVLSRGADLRVVQEMLGHASLSTTQVYTH------LSLPALKRMYRK 302 >gi|296157219|ref|ZP_06840055.1| tyrosine recombinase XerD [Burkholderia sp. Ch1-1] gi|295892555|gb|EFG72337.1| tyrosine recombinase XerD [Burkholderia sp. Ch1-1] Length = 311 Score = 135 bits (340), Expect = 9e-30, Method: Composition-based stats. Identities = 46/288 (15%), Positives = 87/288 (30%), Gaps = 27/288 (9%) Query: 66 KKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 ++ + + L+ N+ ++ + T Sbjct: 18 ASSASIDAFCDALWLEH----GLSRNTLDAYRRDLRLFCEWLAQSRNASLDTASEADLNA 73 Query: 125 ----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 +K +SA + L+ R + WAVR+ I+P + + K+ T+ ++ Sbjct: 74 YSAARQKDKSTSANRRLSVFRRYYSWAVREHRTKIDPTVRIRSAKQPPRFPSTLTEAQVE 133 Query: 181 QFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITV 235 + + R E + SGLR ++ + N ++ + Sbjct: 134 ALLGAPDVDTPLGLRDRTMLELMYASGLRVTELVTLKTVEVGLNEGVVRVMGKGSKERLI 193 Query: 236 ELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--N 283 + + F+ + + M QF K A AGV Sbjct: 194 PFGEEAHGWIERYLREARPVLLGARATDALFVTSRAEGMTRQQFWNIIKRHAAAAGVNAP 253 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 S H +R AT + GA + G + + YT A R RL Sbjct: 254 LSPHTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVA-RERL 300 >gi|149204078|ref|ZP_01881046.1| putative integrase [Roseovarius sp. TM1035] gi|149142520|gb|EDM30565.1| putative integrase [Roseovarius sp. TM1035] Length = 346 Score = 135 bits (340), Expect = 9e-30, Method: Composition-based stats. Identities = 67/339 (19%), Positives = 125/339 (36%), Gaps = 21/339 (6%) Query: 13 KERTRHGKII-YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 +++ G + YY+ G R+ P + F+ AY +A+ ++E TL Sbjct: 12 RKKLSDGSVRVYYYAWKGGPRLP-GKPGDPEFVDAYHTAVQTRRSQQE---------GTL 61 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI-----TTKHIRSGVESR 126 + +++ Y++S + LA ++ + + +I + DF + + + Sbjct: 62 QAILNAYQESQRFLDLAPRTQRDYARHIRKIEGEYHDFPLSALLERAARGEFLSWRDRMA 121 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 K + A + + ++ WA + V NPC + R WT ED F Sbjct: 122 KTSRRQADYTYSVLALIIAWAYDRGLVPSNPCERPGKVYRSERIDSVWTSEDEAAFLKV- 180 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246 S LAF L++G R D R ++ +KTG + + + +L Sbjct: 181 -APSHIGLAFMLALWTGQRQGDLLRLSWSAYDGERIRLRQRKTGARVEIPVGKPLRAMLD 239 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAH 305 T T + K + F + +AGV + + H +R + T A AG + Sbjct: 240 QTSRSAVTILATSRKTSWTESGFRASWGKACKRAGVEDVTFHDLRGTAVTRLAVAGCSVP 299 Query: 306 ELMATYGWKTVDQAETY-TKGADR-IRLGIKNSRRISSV 342 E+ A G R +LGI +++ Sbjct: 300 EIAAITGHSLKQVTAILDAHYLSRDSKLGISAIQKLEEH 338 >gi|303326777|ref|ZP_07357219.1| tyrosine recombinase XerD [Desulfovibrio sp. 3_1_syn3] gi|302862765|gb|EFL85697.1| tyrosine recombinase XerD [Desulfovibrio sp. 3_1_syn3] Length = 309 Score = 135 bits (340), Expect = 9e-30, Method: Composition-based stats. Identities = 56/281 (19%), Positives = 94/281 (33%), Gaps = 26/281 (9%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHI---RSGVES 125 +Y L+ + S+ + + + + I + + S Sbjct: 19 AWLDYL--LAQRGLSPRTVESYGQDLESFFLFEEELAQSGGSASCLDEQEIFLYLAWLRS 76 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-- 183 R +T + + L+++R F +AV + + NP L +E PK ++E+M++ Sbjct: 77 RGNTGRTLARRLSALRAFFAFAVEEGTLKTNPALLLENPKLPQHLPEVLSREEMEKLLVL 136 Query: 184 --SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDG 240 G + R E L +GLR S+ C V L ++ G V L D Sbjct: 137 PDMDEKSGRRDRCMLEMLYAAGLRVSELCNLSVADLDLQRGLVRVFGKGAKERLVPLHDM 196 Query: 241 FMKLLAMTPIGKETFFINNDKQKM--------NATQFSIWFKAKATKAGVNK--SAHGVR 290 LL F Q + K AG+ + S H R Sbjct: 197 IQALLGDYLRSWRPLFSPGGNQLFVNRSGRALSRQYIWKMVKKYTLLAGIRRAVSPHTFR 256 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIR 330 AT + GA + G + E YT A+R+R Sbjct: 257 HSFATHLLEGGADLRAVQLLLGHADISATEIYTHVQAERLR 297 >gi|270290225|ref|ZP_06196450.1| tyrosine recombinase XerC [Pediococcus acidilactici 7_4] gi|304384961|ref|ZP_07367307.1| tyrosine recombinase XerC [Pediococcus acidilactici DSM 20284] gi|270281006|gb|EFA26839.1| tyrosine recombinase XerC [Pediococcus acidilactici 7_4] gi|304329155|gb|EFL96375.1| tyrosine recombinase XerC [Pediococcus acidilactici DSM 20284] Length = 301 Score = 135 bits (340), Expect = 9e-30, Method: Composition-based stats. Identities = 35/285 (12%), Positives = 89/285 (31%), Gaps = 28/285 (9%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFD----YRKITTKHIRSGVE 124 I ++++ + + ++ + + G+ + S + Sbjct: 2 DWIEQFKRYLTVERQYSDKTVTAYLEDLQEFQKFLQTTGNKPELLAVDRFDANVFMSYLF 61 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + +S + ++S+R +++ ++ + +A NP V+ K R + +++M Q Sbjct: 62 DQNLKRTSISRKVSSLRAFYRFLIKNDVIAKNPFEFVQLKKHADHLPRFFYEKEMNQLFD 121 Query: 185 FWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIIT---- 234 + + E L +G+R S+ + ++ +I K Sbjct: 122 TVYQDQGPLHLRNAALLEVLYGTGMRVSECTNLRWTDIDFSMQTILVLGKGNKERYVPFG 181 Query: 235 --------VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284 + + LL + F+N+ Q + + + Sbjct: 182 RYAKHALEDYHQNEWTSLLEKYHQTHQYVFVNHYGQPITVAGVEYVLNQIIKNSSLNGKI 241 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 H +R AT + GA + G ++ + YT Sbjct: 242 HPHMLRHSFATAMLNNGADLRTVQELLGHASLSTTQIYTHVTKEK 286 >gi|317485554|ref|ZP_07944431.1| tyrosine recombinase XerD [Bilophila wadsworthia 3_1_6] gi|316923234|gb|EFV44443.1| tyrosine recombinase XerD [Bilophila wadsworthia 3_1_6] Length = 336 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 43/281 (15%), Positives = 88/281 (31%), Gaps = 21/281 (7%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKH 128 L S + L+ N+ ++ D + + + ++I + + Sbjct: 28 ARLASRWLDGLIAERGLSRNTVAAYRQDLDALQDFLDELETPLSGLDDENITLFIAWLRK 87 Query: 129 TP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + + ++S+R W V + +A NP ++ PK + T++++ + + Sbjct: 88 RGDATRTLARRISSLRSFLAWCVERGELASNPAALIDTPKLPSLLPDVLTQDEIVRLLNA 147 Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-----IITVE 236 G + R E L +G+R S+ L ++ G+ + Sbjct: 148 PDATSKLGLRDRAMLELLYAAGMRVSELIELQPIDLDLQRGVVRIFGKGSKERLVPLHDA 207 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKM----NATQFSIWFKAKATKAGVNK--SAHGVR 290 + L + + + K A +AG+ K S H R Sbjct: 208 AVMRMAEYLKIVRPLFTPVEDRVFLNRSGNGLSRQGVWKLVKRYALEAGIRKPISPHTFR 267 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 AT + GA + G + E YT L Sbjct: 268 HSFATHLLEGGADLRSVQILLGHADMSATELYTHVQSERLL 308 >gi|315607090|ref|ZP_07882094.1| integrase/recombinase XerD [Prevotella buccae ATCC 33574] gi|315251144|gb|EFU31129.1| integrase/recombinase XerD [Prevotella buccae ATCC 33574] Length = 313 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 46/290 (15%), Positives = 100/290 (34%), Gaps = 25/290 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVESRK 127 + Y + + + N+ ++ ++ + + + + + + Sbjct: 20 IAKAYLRYLKLERNYSENTVEAYRHDLGYLMAFLKERGLAAVDAELSDMEEFAATLHEKN 79 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 + S + L+ +R +++ Y+ +P + P+ + E++ + Sbjct: 80 VSARSQSRILSGVRSFYRFLRLDGYMETDPTELLGSPQTGEHLPEYLSTEEVDLLEGSID 139 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------- 232 EG + + E L GLR S+ L ++ G Sbjct: 140 LSKWEGQRNKAIIEVLFSCGLRVSELVNLKFSDLFPEEKFVRVIGKGNKERLVPISSSAL 199 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290 +EL L+ + P ++ F+N + T I K +A AG+ K+ H +R Sbjct: 200 RQLELWYMDRNLMTIKPGEEDYVFLNRRGHHLTRTMILIMIKRQAVAAGIKKTISPHTLR 259 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK--GADRIRLGIKNSRR 338 AT GA + A G +++ E YT +D R +++ R Sbjct: 260 HSFATALLKGGADLRAIQAMLGHESIGTTEVYTHLETSDLRREILEHHPR 309 >gi|323339878|ref|ZP_08080147.1| tyrosine recombinase XerC [Lactobacillus ruminis ATCC 25644] gi|323092751|gb|EFZ35354.1| tyrosine recombinase XerC [Lactobacillus ruminis ATCC 25644] Length = 302 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 38/281 (13%), Positives = 85/281 (30%), Gaps = 27/281 (9%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD-------FDYRKITTKHIRSGV 123 K + ++++ + + S+ ++ R + D I S + Sbjct: 6 KEWLEQFKQYLKVERQYSEATITSYFEDLNEFCRFLDESGGLKSFKDINNIDVHAYMSWL 65 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 R+ ++ + ++S+R +++ VR + +P V + + + +M Sbjct: 66 YDRELKTTTVSRKISSLRAFYRFLVRNDKADQDPFAYVSLRRHPRRLPHFFYEREMNALF 125 Query: 184 SFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238 + E L +G+R S+ +Q + + SI K V+ Sbjct: 126 QAVCGDDPLTVRDNALLENLYSTGMRVSECVGLKMQDIDFPMRSILVHGKGKKDRYVQFG 185 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKM------------NATQFSIWFKAKATKAGVNKS- 285 L T + ++K S K+ + + Sbjct: 186 SYLDNALKAYFEKMRTPVMEKYQKKHDFVFVNHYGDQLTPAGVSYILDKIVEKSSLTTTI 245 Query: 286 -AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 H +R AT GA + G ++ + YT Sbjct: 246 HPHELRHTFATHMLANGADLRSVQELLGHSSISTTQIYTHV 286 >gi|78043995|ref|YP_360612.1| tyrosine recombinase XerC [Carboxydothermus hydrogenoformans Z-2901] gi|77996110|gb|ABB15009.1| tyrosine recombinase XerC [Carboxydothermus hydrogenoformans Z-2901] Length = 297 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 45/265 (16%), Positives = 88/265 (33%), Gaps = 19/265 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFD---YRKITTKHIRSGVESRKHTPSSAIQFLTSMR 141 + + N+ ++E ++ K + + + +A + + ++R Sbjct: 16 RNYSPNTIAAYERDILDFQEFLQGKSFLSVNEVDLKQFLVDILRKNRSRRTAARKMVALR 75 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ----FKSFWSEGSQPRLAFE 197 +++ R ++ NP LS+E PK T +++ + ++ G + R E Sbjct: 76 SFYRFLKRCGFIKENPALSLEIPKIPKTLPEVLTVDEVFKVIEGQENSTPTGLRNRALLE 135 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVELPDGFMKLL--------AMT 248 +GLR + + L ++ G V L + L Sbjct: 136 LFYGAGLRIGEIAGLTLNDLDLTQGYVRVTGKGRRQRIVPLGKYALDSLKLYLEAGRPAF 195 Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHE 306 E F+N + KAG+N+ + H R AT + GA Sbjct: 196 KPKSEKLFLNQQGAGLTVRGIRYLISQIVKKAGLNRKITPHTFRHSYATHLLEGGADIRA 255 Query: 307 LMATYGWKTVDQAETYTKGADRIRL 331 + G K + E YT + RL Sbjct: 256 VQELLGHKRLSTTEIYTH-LSKERL 279 >gi|1303994|dbj|BAA12649.1| YqkM [Bacillus subtilis] Length = 296 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 41/269 (15%), Positives = 95/269 (35%), Gaps = 24/269 (8%) Query: 85 GSLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVESRKHTPS---SAIQFL 137 L+ N+ +S+E + D+ +T HI ++ K + ++ + L Sbjct: 16 RGLSQNTIVSYERDLKSYSLYLTETLHVTDWNHVTRIHIIQYLKHLKDSGKSGKTSARHL 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193 S+R ++ +R++ +P + +E K + + ++++ G + + Sbjct: 76 ASIRSFHQFLLREKVTDKDPSVHIETQKTERALPKVLALNEVERLLDTPKLTSPFGYRDK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252 E L +G+R S+ + ++ I+ V + + + Sbjct: 136 AMLELLYATGIRVSEMIELKTADVHLSMGFIRCFGKGRKERIVPIGEAAASAIEEYMTKA 195 Query: 253 ETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 F+N+ ++++ F K A +AG+ K + H +R AT + Sbjct: 196 RGKLLKNNVSDALFLNHHGKQISRQGFWKNLKKIALEAGIKKELTPHTLRHSFATHLLED 255 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329 GA + G + + YT Sbjct: 256 GADLRAVQEMLGHADISTTQIYTHVTKTR 284 >gi|86131894|ref|ZP_01050491.1| phage integrase family protein [Dokdonia donghaensis MED134] gi|85817716|gb|EAQ38890.1| phage integrase family protein [Dokdonia donghaensis MED134] Length = 299 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 47/292 (16%), Positives = 98/292 (33%), Gaps = 26/292 (8%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR----KITTKHIRSGVE- 124 + I+ Y+ L+ N+ ++ ++ R + +IT + ++ + Sbjct: 3 WETAITNYKNYLRIERGLSDNTIDNYARDLKKLTRYLEQLENSINPLQITREDLQEFIYT 62 Query: 125 -SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 +++ S + ++ ++ F + V ++Y NP +E PK + ++E++ Sbjct: 63 IAKEVQARSQARVISGLKGFFNYLVFEDYRTDNPIDLIESPKIGRKLPDTLSEEEIDALI 122 Query: 184 SFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELP 238 G + R E L GLR ++ + L F K V + Sbjct: 123 DAIDLGKPQGERNRAMLETLYSCGLRVTELISLKLSDLYFEEGFINVVGKGDKQRFVPIS 182 Query: 239 DGFMKLLAMTPIGKETFFINNDKQ-----------KMNATQFSIWFKAKATKAGVNK--S 285 + K + + + ++ K A KA + K S Sbjct: 183 EHTQKYINIYRNELRNHIDVKPEHVDILFLNRRGRQLTRAMIFTIIKDLAIKADIKKNIS 242 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 H R AT GA + G +++ E Y DR L + ++ Sbjct: 243 PHTFRHSFATHLLQNGADLRSIQQMLGHESITTTEIYMH-VDRNDLAREMAK 293 >gi|261345596|ref|ZP_05973240.1| tyrosine recombinase XerD [Providencia rustigianii DSM 4541] gi|282566076|gb|EFB71611.1| tyrosine recombinase XerD [Providencia rustigianii DSM 4541] Length = 300 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 44/280 (15%), Positives = 93/280 (33%), Gaps = 24/280 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRK 127 LI ++ + LA N+ S+ + + ++ + + I + + Sbjct: 9 LIEQFLDTIWLEQDLAENTLASYRNDLQSLDRWLDAQQLHLENVQSIDLQSFLAERIDSG 68 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 + +S+ + L++MR LF++ R++ +P + PK + +++ ++ + Sbjct: 69 YKAASSARLLSAMRRLFQYLYREKIRLDDPSAVIAAPKIPQRLPKDLSEKQVEDLLNAPA 128 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 S + + E L GLR S+ + I+ + L + + Sbjct: 129 TEDSLELRDKAMLEVLYACGLRVSELIGLTFSDISLRQGVIRVVGKGDKERLIPLGEEAI 188 Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289 + F + KM F K A A ++ S H + Sbjct: 189 YWVEKYLEYGRPDLLNGKASDVLFPSKRGTKMTRQTFWHRIKYYAVLANIDGESLSPHVL 248 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + GA + G + + YT A Sbjct: 249 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 288 >gi|116670082|ref|YP_831015.1| tyrosine recombinase XerD [Arthrobacter sp. FB24] gi|116610191|gb|ABK02915.1| tyrosine recombinase XerD [Arthrobacter sp. FB24] Length = 346 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 49/325 (15%), Positives = 98/325 (30%), Gaps = 37/325 (11%) Query: 36 PYPHESTFIPAYMSALTGSTPK--REYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSR 92 A + P+ + + + +++Y + LA N+ Sbjct: 2 GSTVTPAPERAGAEPVRAEPPRAGQPQGEGSARPRNAIDRAVNDYLQHMGVERGLAANTL 61 Query: 93 ISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHT--------PSSAIQFLTSMR 141 ++ + G +T +H+ V++ SA + + ++R Sbjct: 62 SAYRRDLARYANYLAACGPSRPGDVTRRHVTGFVQALSDGSDGGTALGVRSAARTVVAVR 121 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFE 197 L K+ + +P V P + + +++ + + + R E Sbjct: 122 GLHKFWALEGITTADPASDVHPPMPGKRLPKAISVDEVTRILEAAGTDTATGLRDRALLE 181 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFS-----------------IKTQKTGTIITVELPDG 240 FL +G R S++ V + + G Sbjct: 182 FLYSTGARISEAVGLDVDDISLQADQAGPAIVRLFGKGSKERLVPLGSYGARALDAYLVR 241 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISA 298 LLA G F+N +++ KA A KA + + S H +R AT Sbjct: 242 GRPLLAAKGKGTPALFLNARGGRISRQSAWTILKAAADKANITKDVSPHTLRHSFATHLL 301 Query: 299 DAGATAHELMATYGWKTVDQAETYT 323 + GA + G +V + YT Sbjct: 302 EGGADVRVVQELLGHASVTTTQVYT 326 >gi|212636945|ref|YP_002313470.1| Phage integrase:Phage integrase,SAM-like protein [Shewanella piezotolerans WP3] gi|212558429|gb|ACJ30883.1| Phage integrase:Phage integrase,SAM-like protein [Shewanella piezotolerans WP3] Length = 300 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 45/291 (15%), Positives = 93/291 (31%), Gaps = 28/291 (9%) Query: 67 KPTTLKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRK--SGDFDYRKITTKHIRSGV 123 T I + L+ N+ ++ + R + + +R + Sbjct: 3 TEYTPDRAIDLFLDHLWSTKGLSDNTLSAYRTDLRHFDRHQQLKGLKLVESSQFDVRDYL 62 Query: 124 ESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 +R +S+ + ++S+R F + V + ++ +P +E PK + +++D+ Sbjct: 63 ATRFDKGFAKTSSARMMSSLRRFFGYLVVNKQISTDPMALLESPKLARKLPDSLSEDDID 122 Query: 181 QFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------- 229 + S + + E L +GLR S+ ++ L ++ Sbjct: 123 RLLSEPQADDPIECRDKAMLELLYATGLRVSELVGLTMEQLSLRQGLVRIVGKGGKERLV 182 Query: 230 ------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV- 282 + L ++LL + F K A +A + Sbjct: 183 PLGELAVGEVENYLKFARVELLKGKQSDVLFPSKRAQQM--TRQTFWHRIKLYALRANIS 240 Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 S H +R AT + GA + G + + YT A RL Sbjct: 241 TELSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAT-ARLA 290 >gi|312871428|ref|ZP_07731523.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF 3008A-a] gi|311093081|gb|EFQ51430.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF 3008A-a] Length = 307 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 36/283 (12%), Positives = 94/283 (33%), Gaps = 26/283 (9%) Query: 72 KWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIR---SGV 123 + Y + ++N+ ++ + G D+ K++++ I + Sbjct: 5 DDFLKLYYNYLKNERNYSINTCKAYMDDLSEARTFFVENGGFIDWIKLSSRDIEIFIQYL 64 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 +K S+ + ++++R +++ ++ + +NP + + ++M + Sbjct: 65 AQKKDKRSTQSRKISTLRSFYRFLNKRNIIPVNPVELISLRGDHKKLPEFLYNDEMVKVL 124 Query: 184 S----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238 G + E +G+R S+ ++ + + I K V Sbjct: 125 KSISTTTPLGLRNMALLELFYATGMRVSEIANLKLEQIDFELNLILVHGKGNKDRYVAFG 184 Query: 239 DGFMKLLAM-----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-- 285 + L F+N++ ++ + K AG++ S Sbjct: 185 EEAKTALNNYLVEARKKLLLHKTDYGYVFLNSNGNRITSRGLEYIIKNIFLNAGISASVH 244 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 H +R AT + GA + G +++ + YT + Sbjct: 245 PHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTHVTKQ 287 >gi|146297327|ref|YP_001181098.1| tyrosine recombinase XerD [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410903|gb|ABP67907.1| tyrosine recombinase XerD subunit [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 291 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 35/278 (12%), Positives = 98/278 (35%), Gaps = 23/278 (8%) Query: 74 LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHTP 130 ++ + + + N+ +S+ + I + + I + + + + + Sbjct: 3 IVEAFYEHLCQKQRFSQNTVMSYLRDIKKYIEFLNNTGIKIEDTSQATIITYIINMQKSG 62 Query: 131 S---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----QFK 183 + + + S++V +++ + + + ++ PK + + TK++++ + Sbjct: 63 RSNSTIARAIVSLKVFYEFL-KDHNIVDIGKIEIDPPKLERTPPQILTKDEVEKLLSCPR 121 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 +G + + E L +G+R S+ + + I + + + ++ Sbjct: 122 EDDIKGIRDKAMLELLYATGIRVSELISLNLSDINLEHGYIICRNKKRDRIIPIGSYAIE 181 Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291 + + F+N + +M F K AG+NK + H +R Sbjct: 182 AVEKYLNYSRPYLARKKEEEALFLNFNGARMTRQGFWKIVKFYTNVAGINKEITPHILRH 241 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + GA + G + + Y + A+ Sbjct: 242 SFATHLIENGADVRAVQQMLGHADISTTQRYLQVANIK 279 >gi|91226786|ref|ZP_01261439.1| tyrosine recombinase [Vibrio alginolyticus 12G01] gi|269964519|ref|ZP_06178759.1| tyrosine recombinase [Vibrio alginolyticus 40B] gi|91188917|gb|EAS75201.1| tyrosine recombinase [Vibrio alginolyticus 12G01] gi|269830756|gb|EEZ84975.1| tyrosine recombinase [Vibrio alginolyticus 40B] Length = 305 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 41/280 (14%), Positives = 97/280 (34%), Gaps = 24/280 (8%) Query: 74 LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESR---K 127 L+ ++ + L+ N+ S+ + +++ + I+ ++ Sbjct: 14 LVEQFLDAMWMERGLSENTLASYRNDLMKLLVWMEKHRYRLDFISLSGLQEYQSHLVDLD 73 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + +S + L+++R LF++ R++ A +P + PK + ++E + Sbjct: 74 YKQTSRARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPQRLPKDISEEQVDALLEAPD 133 Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM 242 + + E L +GLR ++ ++++ ++ G V + + + Sbjct: 134 PNDPIELRDKAMLELLYATGLRVTELVSLTMENVSLRQGVVRVTGKGGKERLVPMGENAV 193 Query: 243 KLLAMTPIGKET----------FFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289 + F + ++M F K A AG++ S H + Sbjct: 194 DWIETFIQQGRPALLGDTSSDIVFPSKRARQMTRQTFWHRIKYYALIAGIDTDQLSPHVL 253 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + GA + G + + YT A Sbjct: 254 RHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER 293 >gi|327438335|dbj|BAK14700.1| integrase [Solibacillus silvestris StLB046] Length = 280 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 43/271 (15%), Positives = 96/271 (35%), Gaps = 12/271 (4%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG--VESRKH 128 L +Y++ + + ++ ++ ++R GD D +T+ ++ Sbjct: 3 LSEAWKKYQQDKKIEGYSTLTLKTYCFQYNLLLRFFGDIDMNGFSTEKLKEYLIQSGNHL 62 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 PSS + ++ LF+W+ + Y+ NP ++ PK + ++ +++ + Sbjct: 63 KPSSLGHRIRCVKSLFRWSHEEGYILKNPAAKLKEPKLGKRIPKFLSELEIEHLREACQT 122 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLAM 247 + FEF+ +G R + + + I K V L Sbjct: 123 -TMENALFEFMYSTGCRIGEVVKLDRHDIDFRTNSVIVQGKGDKEREVYFNTRCSIWLKR 181 Query: 248 T------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 K++M+ K + +AG+ K H +R AT + Sbjct: 182 YLDEREDDDPCLFITDRKPKRRMSIDNLRYIIKRVSNRAGIKKCIHPHQLRHSYATHMIN 241 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIR 330 GA + + G + + + Y + + +IR Sbjct: 242 NGAPIDVIQSLLGHEKSETTKIYAQLSGKIR 272 >gi|212702793|ref|ZP_03310921.1| hypothetical protein DESPIG_00823 [Desulfovibrio piger ATCC 29098] gi|212673655|gb|EEB34138.1| hypothetical protein DESPIG_00823 [Desulfovibrio piger ATCC 29098] Length = 312 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 50/279 (17%), Positives = 92/279 (32%), Gaps = 24/279 (8%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD------YRKITTKHIRSGVESRK 127 EY L++ + +S+ + + D + + + +RK Sbjct: 24 AWGEYL--LAQRGLSMRTVVSYRQDLENFFLFLDELDAGDKTSLDEHDLFLYLAWLRARK 81 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---- 183 + + + L+++R F++ V + + NP +E P+ +K +M + Sbjct: 82 NAGRTLARRLSALRGFFEYTVEEGLLESNPASLLESPRLPQYLPEVLSKAEMDRLLQLPD 141 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFM 242 G + R E L +GLR S+ C V + + + K V L + Sbjct: 142 MREKCGRRDRCLLEMLYAAGLRVSEVCNLLVADVDMQRGLVLVSGKGAKDRLVPLHSLVL 201 Query: 243 KLLAMTPIGKETFFINNDKQKM--------NATQFSIWFKAKATKAGVNKS--AHGVRKF 292 LL F + + K A AG+ +S H R Sbjct: 202 DLLQQWLSFWRDDFSPQSRYLFLNRSGKGLSRQYVWKMVKKYALLAGIRRSISPHTFRHS 261 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIR 330 AT + GA + G + E YT A+R+ Sbjct: 262 FATHLLEGGADLRAVQLLLGHADISATEIYTHVQAERLH 300 >gi|302036632|ref|YP_003796954.1| putative integrase [Candidatus Nitrospira defluvii] gi|300604696|emb|CBK41028.1| putative Integrase [Candidatus Nitrospira defluvii] Length = 356 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 50/321 (15%), Positives = 106/321 (33%), Gaps = 14/321 (4%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 R+ F + R + A +S + + +Y + P+++ T + L Sbjct: 4 VKRNNIWWMSFTYEGRQVRRSTETSDKKLAEAILSKVKVQIVEGKYFDKPKEEARTFREL 63 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPS 131 + Y + + + + + G+ +T K I + R TP+ Sbjct: 64 MDRYLREHASRR---SGYRRYVNMVTNLTAHFGNPKLEHVTPKTIVAYKNKRYADGVTPA 120 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 + + L M+ F A R+ + + +R+ W + ++ S Sbjct: 121 TINRELALMKKAFNLACREWEWTKDNPVCRVSMERENNTRDRWLTCEEERRLLAASAPWL 180 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--TGTIITVELPDGFMKLLAMTP 249 + F +++GLRC + + N + K G T+ L ++ L Sbjct: 181 QEVI-VFAIHTGLRCGEILNLTWAGVDLNRRTATVFKSKNGERRTIPLSHTLVQALQNKA 239 Query: 250 IGKETF----FINNDKQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSATISADAGATA 304 G+ F + ++A F+ ++ H +R SAT AG Sbjct: 240 RGRRMDSELVFTSAAHTPLDAPNLRRSFRLALKHGQVLDFRFHDLRHTSATRMVQAGVDL 299 Query: 305 HELMATYGWKTVDQAETYTKG 325 +++ G K+ + Y Sbjct: 300 YKVQRILGHKSPMMTQRYAHH 320 >gi|242240703|ref|YP_002988884.1| tyrosine recombinase XerD [Dickeya dadantii Ech703] gi|242132760|gb|ACS87062.1| tyrosine recombinase XerD [Dickeya dadantii Ech703] Length = 299 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 42/279 (15%), Positives = 89/279 (31%), Gaps = 24/279 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESR---KH 128 I ++ + +LA N+ S+ + ++S + R + Sbjct: 9 IEQFLDAVWLERNLAENTLQSYRRDLRTLAAWLAHHHASLSDARPDDLQSFLAERVDGGY 68 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--- 185 +S+ + L++MR LF++ R++ +P + PK + T+ ++ + Sbjct: 69 KATSSARLLSAMRRLFQYLYREKVRPDDPSAVLSSPKLPQRLPKDLTEAQVESLLAAPAT 128 Query: 186 -WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-----TQKTGTIITVELPD 239 + + E L +GLR S+ + + ++ ++ + E Sbjct: 129 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDVSLRQGVVRVIGKGNKERLVPLGEEAVY 188 Query: 240 GFMKLLAMTPIGKETFFINNDKQK------MNATQFSIWFKAKATKAGVN---KSAHGVR 290 + L + M F K A A ++ S H +R Sbjct: 189 WVEQYLEYGRPWLLDGQTLDVMFPSTRGRQMTRQTFWHRIKHYAVLASIDSARLSPHVLR 248 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + GA + G + + YT A Sbjct: 249 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 287 >gi|71906177|ref|YP_283764.1| tyrosine recombinase XerD subunit [Dechloromonas aromatica RCB] gi|71845798|gb|AAZ45294.1| tyrosine recombinase XerD subunit [Dechloromonas aromatica RCB] Length = 302 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 42/269 (15%), Positives = 91/269 (33%), Gaps = 24/269 (8%) Query: 86 SLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSGVESR--KHTPSSAIQFLTSM 140 LA + S+ S ++ + + + + + + +S ++L+++ Sbjct: 24 GLAKATLDSYRSDLSRLALWLANNASEPLLDLHETTLTAFIAHLAKQTRATSQARYLSTL 83 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAF 196 R ++W + + + +P L + P R + + +++ ++ + + R Sbjct: 84 RRFYRWQLGRGRIVADPTLKLANPSRPSRLPKVMSEKQVEALLDAPDLDTPLGLRDRAML 143 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKETF 255 E + +GLR S+ + + ++ K V L ++ + Sbjct: 144 ETIYATGLRVSELVNLRLHEVSLADGVLRALGKGSKERLVPLGQLAIEWIKRYLNEARPD 203 Query: 256 FINNDKQ----------KMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGA 302 +N M F K A AG+ S H +R AT + GA Sbjct: 204 ILNGQHSDDLFITARGGGMTRQAFWQLIKRYALIAGIAPDKLSPHVLRHAFATHLLNHGA 263 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRL 331 + G + + YT A R RL Sbjct: 264 DLRVVQLLLGHADISTTQIYTHVA-RERL 291 >gi|298528009|ref|ZP_07015413.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] gi|298511661|gb|EFI35563.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] Length = 390 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 52/355 (14%), Positives = 114/355 (32%), Gaps = 23/355 (6%) Query: 14 ERTRHGKIIYYFRKGHG----RRIRLPYPHESTFIPAYMSALTGSTP-----KREYINSP 64 E GK YY R ++++L P + A A + + Sbjct: 36 EVRSSGKATYYLRYRDNTGQLKQVKLGTPETLSLDEARTRARATKSQTLIGFDPKAEQEK 95 Query: 65 RKKPTTLKWLI-SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 K T K + Y + + + +++R G I T + Sbjct: 96 IKAIPTFKDFVYDSYL--PYAKTYKKSWEQDQTMIEQRMLRVWGRRKLNSINTHDLIEFQ 153 Query: 124 ESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + S +++ ++ +F A R E + P + + + R +E++ Sbjct: 154 NNLVKGGLKAGSVNRYMALVKYIFNLAERWEIIDKAPTRNARKLEDNGARERYLNQEEVY 213 Query: 181 QFKSF--WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI----KTQKTGTIIT 234 + + EFLL +G R +++ Q + + K G T Sbjct: 214 RLLEALNSCKSQVVPDLIEFLLLTGARKTEAAELTWQEVDMERGIWELPAQRNKAGKPKT 273 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFS 293 V L + +K+L + N + F + +AG+ H +R Sbjct: 274 VPLSEAAIKVLKRRADNGSRWVFPNPETGKPLRHFHNTWDRIRKQAGIPSARLHDLRHSF 333 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSRRISSVVDSDD 347 A+ ++G + +E+ G + + Y D ++ + + + + ++ Sbjct: 334 ASFLVNSGRSLYEVQKLLGHSQLSTTQRYAHLTEDTLKEATEIAGSLVGIRKVEN 388 >gi|94309464|ref|YP_582674.1| site-specific tyrosine recombinase XerD [Cupriavidus metallidurans CH34] gi|93353316|gb|ABF07405.1| tyrosine-based site-specific recombinase [Cupriavidus metallidurans CH34] Length = 302 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 53/282 (18%), Positives = 90/282 (31%), Gaps = 25/282 (8%) Query: 74 LISEYRKSAHWG-SLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRK-- 127 L+ + + LA N+ ++ + R G + + +R Sbjct: 11 LVDRFCDALWLEDGLARNTIDAYRRDLAMLARWLHESGTTALLGVDDTALSGYFAARHLE 70 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 SSA + LT R ++WA+R+ + +PCL + K+ + ++ + Sbjct: 71 TRASSANRRLTVFRRFYQWALREHMIEADPCLLLRPAKQPPRFPKTLSEAQVVALLEAPD 130 Query: 188 E----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPDGF 241 G + R E + SGLR S+ + N + K V Sbjct: 131 IETPLGLRDRTMLELMYASGLRVSELTNMKTIEVGLNEGVARVVGGKGNKERLVPFGAQA 190 Query: 242 MKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289 L + F+ + M F K A AG+ S H + Sbjct: 191 GDWLHRYLSDARPTLLAGRACDELFVTQRGEGMTRQTFWHLIKKHARDAGIHAPLSPHTL 250 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 R AT + GA + G + + YT A R RL Sbjct: 251 RHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVA-RERL 291 >gi|91202076|emb|CAJ75136.1| similar to site-specific tyrosine recombinase [Candidatus Kuenenia stuttgartiensis] Length = 351 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 62/337 (18%), Positives = 117/337 (34%), Gaps = 15/337 (4%) Query: 16 TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75 R G R + R + + L + +Y + T K L+ Sbjct: 3 KRDGIWWTCIRHRGRKIQRSLETKNKKLAESIEAKLRTELIEGKYFDKYEGDLKTFKDLM 62 Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSS 132 + K +++N + S+ + ++ GD IT K + SRK+ P++ Sbjct: 63 ERFMKEHAPK-VSLNMQKSYTTSAKHLLSFFGDLSLLAITPKKVNDYKVSRKNLGKKPAT 121 Query: 133 AIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 + L + F AV++ ++ NP + + K E R + ++ ++ E Sbjct: 122 INKELAMLSKAFCLAVKEWEWIRDNPASKISKEKEANERDRWLSDDEEKRLLENSPEWLS 181 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--TGTIITVELPDGFMKLLAMTP 249 F L++GLR + + I Q+ G T+ L + +L Sbjct: 182 D--IIVFDLHTGLRQDELLSLTWDRVDLFRKVIIIQESKNGKPRTIPLNQISLDILMEKT 239 Query: 250 IGK----ETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATA 304 + + F ++ KMN F KA + N H VR AT A G Sbjct: 240 KVRSLKGDFVFPSSVMTKMNRRNLVRAFDIAKEKASIQNFHFHDVRHCFATRLAQRGVDI 299 Query: 305 HELMATYGWKTVDQAETYTKG-ADRIRLGIKNSRRIS 340 + + G + + Y + +R GI+ ++ Sbjct: 300 YRISKLLGHLNITMTQRYAHHCPESLRGGIEVLEKVD 336 >gi|302035718|ref|YP_003796040.1| putative phage integrase [Candidatus Nitrospira defluvii] gi|300603782|emb|CBK40114.1| putative Phage integrase [Candidatus Nitrospira defluvii] Length = 346 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 49/302 (16%), Positives = 95/302 (31%), Gaps = 10/302 (3%) Query: 33 IRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSR 92 R + A + + + + ++ K T ++ Y K A SR Sbjct: 11 RRSTGTTDRRLAEAILGKIRVKIVEGRFFDTLEAKDHTFNDMMDRYLKERSITK-APASR 69 Query: 93 ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQ 150 E + G +IT K + + R+ T P++ + L +R F A+R+ Sbjct: 70 QRDEQCLAHLRDAFGPLTLAEITPKLLAAYKAKRRETTKPATVNKELGLVRHGFNVAIRE 129 Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210 + + + W + + + F L +G+R + Sbjct: 130 WEWCRDNPMQRVCMETVRNERDRWISSEEEGRLLAN-SAPWLQDMIVFALNTGMRRGEIL 188 Query: 211 RAGVQHLQNNIFSIKTQK--TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN--- 265 Q + + + G TV L ++LL + Sbjct: 189 NLQWQAVDLIRQVLVVMRSKNGEKRTVPLNGRLVELLRRKATMQAKGSFVFSSAASTLVD 248 Query: 266 ATQFSIWFKAKATKAG-VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 A + F+ A KA ++ H +R AT A AG +++ G K+ + Y Sbjct: 249 ARNLTRSFRLAAKKAQLIDVRFHDLRHTFATRLAQAGVDLYKVQRLLGHKSAAMTQRYAH 308 Query: 325 GA 326 + Sbjct: 309 HS 310 >gi|322418059|ref|YP_004197282.1| integrase family protein [Geobacter sp. M18] gi|320124446|gb|ADW12006.1| integrase family protein [Geobacter sp. M18] Length = 356 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 47/338 (13%), Positives = 109/338 (32%), Gaps = 23/338 (6%) Query: 11 VTKERTRHGKIIYYF--RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 + + +T+ GK+ Y R T + + + + + K Sbjct: 4 IQERKTQDGKVTYRVLVRLKGYPPQS-ATFERKTDAKKWAQQTEAAIREGRHFKTREAKK 62 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK- 127 T+ ++ +Y K+ S+ + E + G + +T I + Sbjct: 63 HTVAEMVDKYVKTVLPT--KPKSKDTQEGQLLWWKDEIGLYTLADVTPAMIGECRDKLLA 120 Query: 128 --------HTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 +P++ ++++ ++ F +V +P V++PK +R T ++ Sbjct: 121 GKTKGGGLRSPATTVRYMAALSHAFSVAVNEWGWVEDSPMRKVKKPKEPRGRVRFLTDDE 180 Query: 179 MQQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIIT 234 + L LL +G+R S+ + + + T Sbjct: 181 RNRLLEAAKRSCNNCLYPVVLLALSTGMRFSEIMNLKWKDIDLKRKCLILHDTKNGERRN 240 Query: 235 VELPDGFMKLLAMTPIGKE---TFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVR 290 V + + +L + + + + A A + + H +R Sbjct: 241 VPVVNLAHSVLTERSKVRRLGTELVFPSISDPTMPSNLRKSWAAAVRDANLEDFRFHDLR 300 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 +A+ A GAT E+ G KT+ + Y +++ Sbjct: 301 HSAASYLAMNGATLAEIAEVLGHKTLAMVKRYAHLSEQ 338 >gi|254448186|ref|ZP_05061649.1| tyrosine recombinase XerD [gamma proteobacterium HTCC5015] gi|198262312|gb|EDY86594.1| tyrosine recombinase XerD [gamma proteobacterium HTCC5015] Length = 311 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 53/298 (17%), Positives = 101/298 (33%), Gaps = 29/298 (9%) Query: 61 INSPRKKPTTLKWL----ISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115 S + TT+ I + + L+ N+ S+ S Q+ GD + Sbjct: 2 AKSKSSRATTVSAADDVIIRRFLDNLWMSHGLSDNTLGSYGSDLRQLSSFLGDKGSHLLQ 61 Query: 116 T-----KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170 + + S++ SSA + L+S+R +++ V + + +P +E PK Sbjct: 62 ADRGALQDFLAFRLSKRGKASSAARLLSSLRRFYRYQVSEGRLQEDPTALLESPKLGVRL 121 Query: 171 IRPWTKEDMQQFKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIK 225 + ++E +++ G + RL E L SGLR ++ ++ + + Sbjct: 122 PKSISEEHIERLLRAPDTHTDLGLRDRLMLEMLYASGLRVTELVTLRLEQIDAHHGIVKV 181 Query: 226 TQKTGTIITVELPDGFMKLLAMT------------PIGKETFFINNDKQKMNATQFSIWF 273 K V + D + L F+ M Sbjct: 182 MGKGRKERLVPIGDEALAWLGEYLQSARPDLLKGRDTTTPFLFVTRRGGGMTRQTAWNVI 241 Query: 274 KAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 K A +A + + S H +R AT + GA + G + + YT A+ Sbjct: 242 KKYAQQAHLGGDLSPHTLRHAFATHLLNHGADLRAVQMLLGHSDLSTTQIYTHVANER 299 >gi|161506408|ref|YP_001573520.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160867755|gb|ABX24378.1| hypothetical protein SARI_04606 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 298 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 42/279 (15%), Positives = 92/279 (32%), Gaps = 24/279 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESRKH 128 I ++ + +LA N+ ++ ++ + + + + + Sbjct: 8 IEQFLDALWLERNLAENTLSAYRRDLSMVVAWLRHRGKTLATAQADDLQTLLAERVEGGY 67 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--- 185 +S+ + L++MR F+ R++Y +P + PK + ++ +++ Sbjct: 68 KATSSARLLSAMRRFFQHLYREKYREDDPSAQLASPKLPQRLPKDLSEAQVERLLQAPLI 127 Query: 186 -WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243 + + E L +GLR S+ + + ++ V L + + Sbjct: 128 EQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187 Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290 L + F + Q+M F K A AG++ S H +R Sbjct: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + GA + G + + YT A Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286 >gi|77918417|ref|YP_356232.1| site-specific recombinase/integrase [Pelobacter carbinolicus DSM 2380] gi|77544500|gb|ABA88062.1| site-specific recombinase/integrase [Pelobacter carbinolicus DSM 2380] Length = 396 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 53/353 (15%), Positives = 115/353 (32%), Gaps = 27/353 (7%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIR---------LPYPHESTFIPAYMSALTGSTPKRE 59 P + G + FR R + + P L P Sbjct: 38 PGLHICVNMRGNKRWLFRYRLYGRKKAVAIGPYPAIEPPLAKQMANEMQRNLALGEPVVS 97 Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119 +++ EY + A + + + +QII K G+ +T K I Sbjct: 98 PRAQQKQQKA-FGEFAREYLEHAKQT--KKSWKDDYNKLTNQIIPKWGEVPLTCLTPKEI 154 Query: 120 RSGVE--SRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWT 175 + + + + ++A + + VL+ AV+ + NP V + + R + Sbjct: 155 QGYLNQVKARTSGTNANRHYAVLNVLYNLAVKWGEIDPGKNPMPGVSKFRDNPGRTRYLS 214 Query: 176 KEDMQQFKSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233 E+ ++F + E G A LL++G R + ++ + + ++ +T Sbjct: 215 MEECKRFLAALEEVPGQLAACALRLLLFTGCRAGEVLKSKWEDVSMEGRTMLLPETKNGK 274 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT-----QFSIWFKAKATKAGVNKS--- 285 + + + L + + N ++ F+ AG+ + Sbjct: 275 SRVVHLNPLSLAEIEKLKAFRQPNNPYLFPGSSEDKPLGTVRKTFEHALKLAGLEGTDVV 334 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI-RLGIKNSR 337 H +R A++ A+ G + + + G +V E Y + R + Sbjct: 335 IHTLRHTHASLLANLGESLETIKVSLGHSSVKMTERYAHISGSKTRDASDHLA 387 >gi|237756308|ref|ZP_04584862.1| integrase/recombinase XerD [Sulfurihydrogenibium yellowstonense SS-5] gi|237691535|gb|EEP60589.1| integrase/recombinase XerD [Sulfurihydrogenibium yellowstonense SS-5] Length = 297 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 44/299 (14%), Positives = 100/299 (33%), Gaps = 30/299 (10%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-- 128 + + + + N+ ++ F+Q I+ GD + +IT I + + Sbjct: 3 VSECCNLFLSYMA--DKSPNTVKNYRVDFNQFIKIVGDKNINEITKADIAKFRMTLQMQN 60 Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S+ + L S+ LF++ + E V +P RPK + + E++++ Sbjct: 61 RKSSTIARKLASVNSLFQYLMDLELVNSSPITKSHRPKVSQKIPSALSNEEVKKLIDAL- 119 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----------------- 230 + Q + L +GLR S+ ++ Sbjct: 120 DSIQDKAIVILFLTTGLRSSELLSIKKSNIIVERNGQTFSIDRLIEGEVKEGDIAYIRVV 179 Query: 231 ----TIITVELPDGFMKLLAMTPIGKETF-FINNDKQKMNATQFSIWFKAKATKAGVNKS 285 V + +++L F +N ++ + K + Sbjct: 180 GKGDKEREVPITGKPLEILVQYLKSINEFLDVNEYIFPISYHLLWRKIRNIGKKLAITLH 239 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 H +R +AT++ +GA + G + Y K + +L +K ++ +S ++ Sbjct: 240 PHKLRHTAATMALSSGAELRVIQELLGHASPVTTARYAK-VGQKQL-LKATKALSENIE 296 >gi|253700949|ref|YP_003022138.1| tyrosine recombinase XerD [Geobacter sp. M21] gi|251775799|gb|ACT18380.1| tyrosine recombinase XerD [Geobacter sp. M21] Length = 292 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 46/267 (17%), Positives = 93/267 (34%), Gaps = 21/267 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMR 141 A N+ ++ ++ + G+ + I + + K P S + L+++R Sbjct: 16 KGAAANTVAAYSRDLNRYLLFLGEREPDGIRPIDVTGFLAKLKGEGIAPRSRARALSALR 75 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFE 197 +L ++ +R+ Y +NP VE PK + + +++ S + + + E Sbjct: 76 MLHRFLLREGYCELNPTAIVEAPKGVRKLPAVLSGREVEALLSSPHDTGAQELRDKAMLE 135 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMTPIGKETFF 256 L +GLR S+ + + + + K V + + + Sbjct: 136 LLYATGLRVSELVGLKLGEVNLSAGYLMTIGKGDKERLVPIGESACRATGAYLQKARGEL 195 Query: 257 INNDKQK----------MNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATA 304 + M+ F K +A +AGV S H +R AT + GA Sbjct: 196 LKGKASPLLFLSRLGGGMSRQAFWNIIKKRALQAGVRASISPHTLRHSFATHLLENGADL 255 Query: 305 HELMATYGWKTVDQAETYTKGADRIRL 331 + G + + YT R R+ Sbjct: 256 RSVQIMLGHADLSSTQIYTHVT-RERM 281 >gi|146297890|ref|YP_001192481.1| phage integrase family protein [Flavobacterium johnsoniae UW101] gi|146152308|gb|ABQ03162.1| phage integrase family protein [Flavobacterium johnsoniae UW101] Length = 298 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 46/279 (16%), Positives = 90/279 (32%), Gaps = 25/279 (8%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR----KITTKHIRSGVES 125 I +Y+ L+ N+ ++ +++ KIT + I+ + + Sbjct: 3 WNNYIKDYQSYLRIERGLSKNTIENYSFDIERLCLFLETNQIEVSPLKITDETIQQFIYA 62 Query: 126 RKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 P S + ++ ++ F + V ++Y +P +E PK + +++ Sbjct: 63 ISKEVNPRSQARIISGLKSFFSYLVFEDYRNDSPLELIESPKTGRKLPDTLAVKEIDALI 122 Query: 184 SFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELP 238 +EG + R E L GLR S+ + L + IK V + Sbjct: 123 DAIDLSSNEGERNRAILESLYGCGLRVSELVSLKISDLYFDEGFIKITGKGNKERFVPIG 182 Query: 239 DGFMKLLAMTPIGKETFFINNDKQ-----------KMNATQFSIWFKAKATKAGVNKS-- 285 K + + ++ K A K +NKS Sbjct: 183 KLTQKYIQIYQNEVRVHLNIKKGCEDTLFLNRRGNQLTRAMIFTIIKDLAVKINLNKSIS 242 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT + GA + G +++ E Y Sbjct: 243 PHTLRHSFATHLLENGADLRSIQLMLGHESITTTEIYVH 281 >gi|91785030|ref|YP_560236.1| site-specific tyrosine recombinase XerD [Burkholderia xenovorans LB400] gi|91688984|gb|ABE32184.1| Putative phage integrase/recombinase family protein [Burkholderia xenovorans LB400] Length = 311 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 45/288 (15%), Positives = 86/288 (29%), Gaps = 27/288 (9%) Query: 66 KKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 ++ + + L+ N+ ++ + T Sbjct: 18 ASSASIDAFCDALWLEH----GLSRNTLDAYRRDLRLFCEWLAQSRNASLDTASEADLNA 73 Query: 125 ----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 +K +SA + L+ R + WAVR+ ++P + + K+ T+ ++ Sbjct: 74 YSAARQKDKSTSANRRLSVFRRYYGWAVREHRAKVDPTVRIRSAKQPPRFPSTLTEAQVE 133 Query: 181 QFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITV 235 + + R E + SGLR ++ + N ++ + Sbjct: 134 ALLGAPDVDTPLGLRDRTMLELMYASGLRVTELVTLKTVEVGLNEGVVRVMGKGSKERLI 193 Query: 236 ELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--N 283 + + F+ + M QF K A AGV Sbjct: 194 PFGEEAHGWIERYLREARPALLGARATDALFVTGRAEGMTRQQFWNIIKRHAAAAGVNAP 253 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 S H +R AT + GA + G + + YT A R RL Sbjct: 254 LSPHTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVA-RERL 300 >gi|260771883|ref|ZP_05880801.1| site-specific recombinase XerD [Vibrio metschnikovii CIP 69.14] gi|260613175|gb|EEX38376.1| site-specific recombinase XerD [Vibrio metschnikovii CIP 69.14] Length = 302 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 44/280 (15%), Positives = 100/280 (35%), Gaps = 24/280 (8%) Query: 74 LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRK--- 127 L+ ++ + LA N+ +S+ + +++ D+ I+ + Sbjct: 11 LVEQFLDAMWMERGLAENTLMSYRNDLTKLLLWMEQHDYRLDFISLAGLLEYQSWLTDQD 70 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + +S + L+++R LF++ R++ + +P + PK + ++E ++ + Sbjct: 71 YKQTSRARMLSALRRLFQYLHREKVRSDDPSALLVSPKLPQRLPKDLSEEQVEALLNAPD 130 Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFM 242 + + E L +GLR ++ ++++ K G V + + + Sbjct: 131 PNDPLELRDKAMLELLYATGLRVTELISLTMENISLRQGVVRVVGKGGKERLVPMGENAI 190 Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289 + + F + Q+M F K A AG++ S H + Sbjct: 191 EWIETFIAQGRLHLLGDNTSDVVFPSKRAQQMTRQTFWHRIKYYAVIAGIDVEKLSPHVL 250 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + GA + G + + YT A Sbjct: 251 RHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER 290 >gi|326331272|ref|ZP_08197564.1| tyrosine recombinase XerD [Nocardioidaceae bacterium Broad-1] gi|325950905|gb|EGD42953.1| tyrosine recombinase XerD [Nocardioidaceae bacterium Broad-1] Length = 298 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 52/276 (18%), Positives = 89/276 (32%), Gaps = 30/276 (10%) Query: 78 YRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT----------KHIRSGVESR 126 Y LA N+ S+ + D +T H+R G E Sbjct: 4 YLDHLTVERGLAANTLSSYRRDLRRYAEFLAQQDVDDLTAVSEATVSGFLAHLREGSEEH 63 Query: 127 KH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + +SA + + ++R K+AV V NP V+ P+ + + D++ Sbjct: 64 PALSATSAARTVVAVRGFHKFAVADGLVEANPAGHVKPPRAEKRLPKALPLSDVEAILEA 123 Query: 186 -----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239 + R E L +G R S++ V L K G V + Sbjct: 124 AGAPGTPLALRDRALLEVLYGTGARISEAVGLDVDDLDRVDHVALLRGKGGKERIVPVGS 183 Query: 240 GFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287 ++ + F+N +++ A +AG++K S H Sbjct: 184 YAIEAVEAYLTRARPDLASARSGGALFLNARGGRLSRQSAWTVLTRAAERAGIDKDVSPH 243 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 +R AT D GA + G +V + YT Sbjct: 244 TLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYT 279 >gi|157374032|ref|YP_001472632.1| tyrosine recombinase XerD [Shewanella sediminis HAW-EB3] gi|157316406|gb|ABV35504.1| tyrosine recombinase XerD [Shewanella sediminis HAW-EB3] Length = 304 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 47/298 (15%), Positives = 102/298 (34%), Gaps = 32/298 (10%) Query: 74 LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVE---SRK 127 LI + L+ N+ ++ + + R +++ + IR ++ + Sbjct: 14 LIELFLDDLWSSRGLSDNTLSAYRTDLNHFDRHIQRSGQQLTEVSQEGIRGYLDIRFEQG 73 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +S+ + ++S+R + + V + + INP ++ PK + ++ D+ + S Sbjct: 74 FARTSSARLVSSLRRFYGFLVICKKIEINPTAQIKSPKIARKLPGSLSEFDVDRLLSEPD 133 Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM 242 + + E L +GLR ++ ++ L ++ G V + + + Sbjct: 134 VEDSIECRDKAMLELLYATGLRVTELVSLTMEQLSLRQGLVRVIGKGGKERLVPMGELAV 193 Query: 243 KLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290 + + F + M F K A ++GV S H +R Sbjct: 194 DNIEYYLQGARAELLKQKQSDVLFPSKRGVMMTRQTFWHRIKLYALRSGVSTELSPHTLR 253 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 AT + GA + G + + YT A R+S + P Sbjct: 254 HAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAK---------ARLSQLHSEHHP 302 >gi|311742411|ref|ZP_07716220.1| tyrosine recombinase XerD [Aeromicrobium marinum DSM 15272] gi|311314039|gb|EFQ83947.1| tyrosine recombinase XerD [Aeromicrobium marinum DSM 15272] Length = 310 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 46/287 (16%), Positives = 97/287 (33%), Gaps = 30/287 (10%) Query: 67 KPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSG 122 T+ +++Y LA N+ +S+ + + + G +IT + Sbjct: 4 ATVTVGQAVADYLSHLGVERGLADNTLLSYRRDLRRYLGYLAEIGREQPDEITEADLLGF 63 Query: 123 VESRKHT--------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 V + +S + + ++R L ++ +R++ VA + +V+ P+ + Sbjct: 64 VALLRTGDDLTGPLGAASVARHVVTVRGLHRFWLREQLVATDVAGAVKPPRPAQRLPKAL 123 Query: 175 TKEDMQQFKSF-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--------- 220 E ++ + R E L +G R S++ V L + Sbjct: 124 ALEQVEAILDAAGAPGTRLAQRDRALLELLYGTGARISEAVGIDVDDLDLDESTLLLRGK 183 Query: 221 --IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278 I + + ++ + F+N+ +++ A Sbjct: 184 GGKHRIVPVGSFAATAIGDYLVGARVALSSTAASPALFLNSRGGRLSRQSAWTVLTRAAR 243 Query: 279 KAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 +AGV + S H +R AT D GA + G +V + YT Sbjct: 244 RAGVETDVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYT 290 >gi|222529770|ref|YP_002573652.1| tyrosine recombinase XerD [Caldicellulosiruptor bescii DSM 6725] gi|312622005|ref|YP_004023618.1| tyrosine recombinase xerd [Caldicellulosiruptor kronotskyensis 2002] gi|222456617|gb|ACM60879.1| tyrosine recombinase XerD [Caldicellulosiruptor bescii DSM 6725] gi|312202472|gb|ADQ45799.1| tyrosine recombinase XerD [Caldicellulosiruptor kronotskyensis 2002] Length = 291 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 39/282 (13%), Positives = 97/282 (34%), Gaps = 24/282 (8%) Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGV 123 ++ Y + + N+ S+ + I D + T + Sbjct: 1 MSIIEAFGNYLQ--RQNRFSQNTISSYLRDAKKYIEFLDDIKIKLENTSQTTLIAYIISM 58 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + + S+ + + S++V +++ + + + + +E PK + + T++++++ Sbjct: 59 QKGGKSNSTIARAIVSLKVFYEFL-KIQDIVDIGKIEIEPPKLEKSPPQILTRDEVERLL 117 Query: 184 SFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239 S E G + + E L +G+R S+ + + I + + + Sbjct: 118 SCPKEDDIKGIRDKAMLELLYATGIRVSELINLNLDDINLEHGYIICKNKKRDRVIPIGS 177 Query: 240 GFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287 + + + F+N ++M F K A A ++K + H Sbjct: 178 YAISAVEKYLRHSRPYLAKSKDEEALFLNFSGERMTRQGFWKIVKFYAQNAKIDKEITPH 237 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R AT + GA + G + + Y + A+ Sbjct: 238 VLRHSFATHLIENGADVRAVQQMLGHADISTTQRYLQVANVK 279 >gi|300310183|ref|YP_003774275.1| site specific integrase/recombinase [Herbaspirillum seropedicae SmR1] gi|300072968|gb|ADJ62367.1| site specific integrase/recombinase protein [Herbaspirillum seropedicae SmR1] Length = 307 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 51/283 (18%), Positives = 95/283 (33%), Gaps = 24/283 (8%) Query: 72 KWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKI---TTKHIRSGVESRK 127 + I E+ S L+ N+ ++ + + + + + + +R Sbjct: 15 REAIDEFCDSLWLEDGLSKNTLEAYRRDMTRYAHWLYQERAKALYETQAEDLNAYFAARH 74 Query: 128 H--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 PSS+ + L ++ F+ A+RQ +VA +PCL + ++ + ++ ++ + Sbjct: 75 DQTKPSSSNRRLAVLKRFFQLALRQHHVAADPCLKLRSARQPQRFPKTLSEGQVEALLAA 134 Query: 186 W----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDG 240 G + R E + SGLR S+ + N ++ V + Sbjct: 135 PDVSTPLGLRDRAMIELMYASGLRVSELVLLKSIEVGMNEGVLRVTGKGSKTRLVPFGEE 194 Query: 241 FMKLLAMTPIGKETFFINNDKQ----------KMNATQFSIWFKAKATKAGV--NKSAHG 288 L + M F K A +AGV S H Sbjct: 195 AGSWLMRYLAEARAQILQGQVDDALFVTARGGPMTRQMFWTLIKKYALQAGVTARLSPHT 254 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +R AT + GA + G + + YT A R RL Sbjct: 255 LRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVA-RERL 296 >gi|148266023|ref|YP_001232729.1| tyrosine recombinase XerC [Geobacter uraniireducens Rf4] gi|146399523|gb|ABQ28156.1| tyrosine recombinase XerD subunit [Geobacter uraniireducens Rf4] Length = 294 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 50/298 (16%), Positives = 99/298 (33%), Gaps = 30/298 (10%) Query: 72 KWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVES 125 K I ++ + +++ ++ ++ S +Q + D +T IR + Sbjct: 2 KQAIEQFCRYLSTERNVSPHTLGAYRSDLEQFLAFIDREQRPGADVNSVTHLLIRRYMAQ 61 Query: 126 RK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-- 181 H SS + L ++R F++ +R+ A NP V PK + + +++ Sbjct: 62 LHKDHQKSSIGRKLAAIRAFFRYLLREGLAAKNPAELVSTPKMEKKVPFHLNIDEVTALV 121 Query: 182 --FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP 238 +S S + R E L G+R S+ V + + + K V + Sbjct: 122 EAPQSADSLSLRNRAILETLYSCGIRVSELTGLNVGDVDMDERLARVLGKGNKERIVPVG 181 Query: 239 DGFMKLLAMTPIGKETFFINNDKQ------KMNATQFSIWFKAKATK--AGVNKSAHGVR 290 LA + ++ ++ + + K A S H +R Sbjct: 182 TYARNALAAYLASRNNPSMDAPLILNARGGRLTSRSVARIIDKYIIKIAAMKKVSPHTLR 241 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 AT + GA + G ++ + YT + R+ V D P Sbjct: 242 HTFATHMLEGGADLRAIQELLGHSSLSTTQKYTHVS---------IDRLMEVYDKAHP 290 >gi|149910171|ref|ZP_01898817.1| tyrosine recombinase [Moritella sp. PE36] gi|149806757|gb|EDM66721.1| tyrosine recombinase [Moritella sp. PE36] Length = 296 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 40/299 (13%), Positives = 95/299 (31%), Gaps = 32/299 (10%) Query: 73 WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVE---SR 126 +I ++ H L+ N+ S+ + +Q + I++ + Sbjct: 5 EIIEQFLDIMWHERGLSDNTLSSYRNDLNQYHHWLVQHKQQLLTVDRLEIQAFMASRFDL 64 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + SS + L+++R +++ R++ +P + PK ++ ++ + Sbjct: 65 GYKASSTARQLSAIRRFYQYLYREQMRDDDPTALLISPKLPQRLPDDLSEAEVNALLAAP 124 Query: 187 SEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-----------TQKTGT 231 + + E L +GLR S+ ++ + ++ Sbjct: 125 ELDDPIQLRDKAMMEVLYATGLRVSELVGLSMESVSLRQGLVRVTGKGGKERLVPMGEEA 184 Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289 + E + + + + F + M F K + AG+ + S H + Sbjct: 185 VYWTERFIAEGRATLLKGLTSDVVFPSRRGNFMTRQTFWHRLKHYSQVAGITTHLSPHTL 244 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 R AT + GA + G + + YT + R+ + P Sbjct: 245 RHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHV---------ATARLEQLHSEHHP 294 >gi|127511704|ref|YP_001092901.1| tyrosine recombinase XerD [Shewanella loihica PV-4] gi|126636999|gb|ABO22642.1| tyrosine recombinase XerD [Shewanella loihica PV-4] Length = 303 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 45/282 (15%), Positives = 93/282 (32%), Gaps = 24/282 (8%) Query: 74 LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVE---SRK 127 LI + L+ ++ ++ S R + +R + Sbjct: 13 LIEPFLDDLWAAKGLSDHTLQAYRSDLSHFDRYLNKQGSSLLSTSQAEVRDYLALRVEHG 72 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +S+ + L+S+R +K+ + ++ + ++P ++ PK + ++ D+ + S + Sbjct: 73 FAKTSSARLLSSLRRFYKYLLAKKLIEVDPMAMIKPPKLARKLPDALSEADVDRLLSEPN 132 Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 + R E L SGLR S+ + + ++ V + Sbjct: 133 REDPVEARDRAMLELLYASGLRVSELVGLTLDQMSLRQGVVRIVGKGSKERLVPFGEQAG 192 Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290 + F + M F K A +AG+ + S H +R Sbjct: 193 AEIEDYLKAARFELLKGKASDVVFPSKRGNMMTRQTFWHRIKLYAQRAGIAVHLSPHTLR 252 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 AT + GA + G + + YT A + RL Sbjct: 253 HAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVA-KARLA 293 >gi|313771918|gb|EFS37884.1| tyrosine recombinase XerD [Propionibacterium acnes HL074PA1] Length = 306 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 42/279 (15%), Positives = 89/279 (31%), Gaps = 30/279 (10%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHI---RSGVESRK 127 +Y + L+ N+ ++ + G ++T + R ++ Sbjct: 9 AEDYLRHLVVERGLSDNTVQAYRRDLLRYQEYLGSRGIGSLAEVTRVDVEEFRRHLDHIG 68 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 P+S + + ++R L ++AV + + + R + + + ++ + Sbjct: 69 LAPASVTRCVVAVRNLHRFAVGSGQLQADVTAGMSPGTRSRRLPKALSMDQVESLLAAPD 128 Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-----TQKTGTIITVELP 238 EG + E L +G R S+ C V ++ + K V L Sbjct: 129 TSTVEGLRDAALLELLYGTGARVSEVCALDVDDIRPVLDDPDLGLRLIGKGDKERIVPLG 188 Query: 239 DGFMKLLAMTPIGKETFFI-----------NNDKQKMNATQFSIWFKAKATKAGVN---K 284 K + I + N ++++ + AG++ Sbjct: 189 SYAAKAVDAWLIRGRPAWAEIGNGEHALLLNTRGRRLSRQSAWAVIRRAGEAAGLDVEHL 248 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 S H +R AT D GA + G +V + YT Sbjct: 249 SPHSLRHSYATHLLDGGADIRVVQELLGHSSVTTTQIYT 287 >gi|170781657|ref|YP_001709989.1| site-specific tyrosine recombinase XerD [Clavibacter michiganensis subsp. sepedonicus] gi|169156225|emb|CAQ01367.1| putative XerD-family recombinase [Clavibacter michiganensis subsp. sepedonicus] Length = 328 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 48/306 (15%), Positives = 91/306 (29%), Gaps = 32/306 (10%) Query: 52 TGSTPKREYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---G 107 P ++ + P L+ + + + L+ N+ ++ + G Sbjct: 4 AADGPGGAAPDTAPEVPVALRRAVDRWLRHVEVERGLSRNTIQAYRRDLARYTAHLAAEG 63 Query: 108 DFDYRKITTKHIR------SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161 D T+ H+ E T SS + L+S+R ++ V + V ++ Sbjct: 64 VADPADATSAHVAGFAQRVRDPEQGGLTASSLARMLSSVRSFHRFLVEEGIVEVDVSAEQ 123 Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHL 217 + PK + + + E M + + + E L +G R S+ V + Sbjct: 124 KPPKLPSRLPKAVSVETMGRILDATDGDEPLRVRDKALLELLYATGARVSEITALTVDDV 183 Query: 218 QNN----------------IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261 + +LA F+ Sbjct: 184 LGPDGAAAEIVRVVGKGGKQRIVPVGSFARRAVDAYLVRVRPILAARGSATPALFLGLRG 243 Query: 262 QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 ++ + KA A +AGV S H R AT GA + G +V Sbjct: 244 HALSRQNAWLVIKAAAERAGVTEEISPHIFRHSFATHLIAGGADVRVVQELLGHSSVATT 303 Query: 320 ETYTKG 325 + YT+ Sbjct: 304 QIYTRV 309 >gi|299820311|gb|ADJ54321.1| integrase [archaeon enrichment culture clone 1(2010)] Length = 282 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 45/269 (16%), Positives = 87/269 (32%), Gaps = 23/269 (8%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGV---ESRKHT 129 + Y S + + ++ S + I ++T + I + Sbjct: 9 LEGYLGSLKARGRSERTLKTYRSILTRFIDYLAVNGLTPDRVTEQDIDRFMLELSKMGWD 68 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 +S ++R K+ R + PKR + T+E++ + + Sbjct: 69 QNSLFTVAVAVRSFLKYLGRNV--------NYPLPKRPKMLPKYLTREELTRLLGACQDD 120 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF----MKL 244 + + L +G+R S+ V + + SI+ V D + Sbjct: 121 YEKLIIGL--LLTGVRVSELVNIRVSDIDIDKRSIRVVGKGYKERVVFFADWLVPLLKRY 178 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302 L N Q ++ K +AG+NK + H +R AT+S +G Sbjct: 179 LRQNKSEWLFPSEINPDQHVHYVTVERILKKIVKRAGINKKVTPHTLRHTFATLSLASGL 238 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRL 331 E+ G ++ + YT D RL Sbjct: 239 DIREIQELLGHSSLSSTQIYTH-VDPQRL 266 >gi|297626543|ref|YP_003688306.1| Site-specific recombinase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922308|emb|CBL56880.1| Site-specific recombinase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 331 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 51/296 (17%), Positives = 98/296 (33%), Gaps = 36/296 (12%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126 L + +Y L+ N+ ++ + +R G D +ITT + S E Sbjct: 24 LGNWLEDYLDHLGVERGLSPNTVAAYRRDLTRYLRHLSSRGIDDPSRITTADVTSFEEEL 83 Query: 127 KHT--------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 PSS + + ++R+ +A R+ V N ++ P+ + ++ Sbjct: 84 SRGDASHKALAPSSVGRAVVAVRMFHGFAAREGLVDHNVAAALHPPRAGKRLPKALGVDE 143 Query: 179 ----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKT 229 + + G + FE L +G R S++ V L + K Sbjct: 144 VARLIDSIERQTPIGLRDAALFEVLYGTGARISEALSLDVDDLTRVLADPDGPLRVVGKG 203 Query: 230 GTIITVELPDGFMKLLAMT------------PIGKETFFINNDKQKMNATQFSIWFKAKA 277 V L + F+N +++ + +A Sbjct: 204 NKERVVPLGSYARSAVQAWLVRGRPALAERAREFTPALFLNTRGARLSRQSAWEALRTRA 263 Query: 278 TKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIR 330 +AG+ + H +R AT D GA + G +V + YT+ A ++R Sbjct: 264 RQAGITADIGPHSLRHSFATHLLDGGADIRVVQELLGHASVSTTQIYTEVTAQQLR 319 >gi|150026059|ref|YP_001296885.1| tyrosine recombinase XerD [Flavobacterium psychrophilum JIP02/86] gi|149772600|emb|CAL44083.1| Tyrosine recombinase XerD [Flavobacterium psychrophilum JIP02/86] Length = 299 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 51/279 (18%), Positives = 99/279 (35%), Gaps = 27/279 (9%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR----KITTKHIRSGVESRKHT--PS 131 Y K L+ NS ++ +++ D + I + I+ + + P Sbjct: 13 YLKIE--RGLSKNSVANYVLDIEKLNHYLSDNNIHVSPVNINEQTIQQFIYEISKSVNPR 70 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS---- 187 S + ++ ++ F + + ++Y NP +E P+ + ED+ + + + Sbjct: 71 SQARTISGLKSFFSYLIFEDYRPDNPLALIETPRLGRKLPDTLNIEDIDKLIAAINLTTN 130 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN------------NIFSIKTQKTGTIITV 235 EG + R E L GLR S+ + L + + Sbjct: 131 EGERNRAMLETLYACGLRVSELVSLKISDLFFAEGFIKITGKGNKQRFVPISEYTQKYIE 190 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293 + LL++ ++T F+N +++ K A + G+NK S H R Sbjct: 191 IYKNTDRNLLSIQKGHEDTLFLNRRGRQLTRAMIFTIIKNLAVEIGLNKVISPHTFRHSF 250 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 AT + GA + G +++ E Y DR L Sbjct: 251 ATHLLENGADLRSIQLMLGHESITTTEIYMH-VDRKHLS 288 >gi|260599234|ref|YP_003211805.1| site-specific tyrosine recombinase XerD [Cronobacter turicensis z3032] gi|260218411|emb|CBA33498.1| Tyrosine recombinase xerD [Cronobacter turicensis z3032] Length = 298 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 42/279 (15%), Positives = 91/279 (32%), Gaps = 24/279 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVESRKH 128 I ++ + +LA NS ++ ++ T + + + + Sbjct: 8 IEQFLDALWLERNLAENSLSAYRRDLSMVVEWLHHRGLSLATVQSGDLQTLLAERVEGGY 67 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-- 186 +S + L+++R LF+ R++ +P + PK + ++ + + Sbjct: 68 KATSTARMLSAVRRLFQHLYREKIRDDDPSALLASPKLPQRLPKDLSEAQVDRLLQAPTV 127 Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243 + + E L +GLR S+ + + ++ V L + + Sbjct: 128 EEPIELRDKAMLEVLYATGLRVSELVGLTMSDVSLRQGVVRVIGKGNKERLVPLGEEAVY 187 Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290 + + F +N ++M F K A AG++ S H +R Sbjct: 188 WVEQYLTHGRPWLLNGQSLDILFPSNRARQMTRQTFWHRIKHYAQLAGIDSEKLSPHVLR 247 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + GA + G + + YT A Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286 >gi|238651031|ref|YP_002916888.1| site-specific tyrosine recombinase XerD [Rickettsia peacockii str. Rustic] gi|238625129|gb|ACR47835.1| site-specific tyrosine recombinase XerD [Rickettsia peacockii str. Rustic] Length = 306 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 49/287 (17%), Positives = 99/287 (34%), Gaps = 35/287 (12%) Query: 73 WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRK--ITTKHIRSGVESRKH- 128 I ++ + +L+ NS +S++ + ITT++IR +E Sbjct: 2 EFIVQFLEMLLAERALSKNSILSYKRDLFDFQNYLAKHKLSELNITTENIRDWIEYLASD 61 Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 S + +++++ +++ + + + A NP L+V+ PK + + + ++ Sbjct: 62 DLQARSINRKISTIKSYYEFLISENHTAFNPVLNVDLPKYQNKLPEILSIAQIKSLLEHC 121 Query: 187 -----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--------QNNIFSIKTQKTGTII 233 EG + L SGLR S+ + + + K Sbjct: 122 SQDNSPEGIRLNAMIHLLYASGLRVSELVSLKLADILTNKTSTGEVRKIFSVLGKGNKER 181 Query: 234 TVELPDG----FMKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWFKAKATKA 280 + + + K LA+ + N M F+I K+ A A Sbjct: 182 VIVINEQAVISIAKYLAIRGVFVNKAKPRNLIYLFPSSALAGYMTRQNFAILLKSAALYA 241 Query: 281 GVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 G+N S H +R A+ + GA + G + + YT Sbjct: 242 GLNHEYISPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTH 288 >gi|298531262|ref|ZP_07018662.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] gi|298508872|gb|EFI32778.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] Length = 394 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 54/347 (15%), Positives = 111/347 (31%), Gaps = 23/347 (6%) Query: 9 PFVTKERTRHGKIIYYFRKGHG----RRIRLPYPHESTFIPAYMSALTGSTP-----KRE 59 P T E GK YY R ++ R+ + A A + Sbjct: 31 PGFTLEVRSTGKCTYYQRYRDKFGRVKQARIGPTDSISLEDARHRAKQIRSQTIMGYDPR 90 Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKH 118 + + K + + K + + S E + +I+ G+ +IT Sbjct: 91 EQVEKNRNMPSFKQFVED--KYIPYIKVHKRSWEFDEKLINQRIMPLWGNMKLSEITRDD 148 Query: 119 IRS---GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 ++ H P S +++ ++ +F A R E + +P V R + + R + Sbjct: 149 VQELQSNFLRMGHKPGSVNRYMALVKYIFNLAERWEVIDKSPTRHVSRLEEENHKERYLS 208 Query: 176 KEDMQQFKS--FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KTGTI 232 ++ ++ S EFL+ +G R S++ Q L + Sbjct: 209 SDETERLLSELKKCRSPVVPDIIEFLILTGARRSEAVNLPWQELDMAKGVWIIPAERNKA 268 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA---TQFSIWFKAKATKAGVN-KSAHG 288 ++ L + KE F + KAG+ H Sbjct: 269 KVKKVIPLSRGALNVLERRKENGCEYVFPNPETGEPMKHFHGTWDRIRKKAGIPDVRIHD 328 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIK 334 +R A++ ++G + +E+ G + + Y + D ++ + Sbjct: 329 LRHNFASLLINSGRSLYEVQKLLGHADISTTQRYAHLSQDTLKDATE 375 >gi|322417793|ref|YP_004197016.1| integrase family protein [Geobacter sp. M18] gi|320124180|gb|ADW11740.1| integrase family protein [Geobacter sp. M18] Length = 402 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 46/343 (13%), Positives = 105/343 (30%), Gaps = 26/343 (7%) Query: 10 FVTKERTRHGKIIYYFRKGHGRRIR---LPYPHESTFIPAYMSALT-----GSTPKREYI 61 + +++G+ + R R + + + A Sbjct: 43 GLHLRVSKNGRRFFQHRYRFFGRKKCLNIGEFPAVSLQEARQRVAEHKSSLARDKDPAEE 102 Query: 62 NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121 + T ++Y H + G IT++ + Sbjct: 103 RGKARNDLTFAEFATQYYL-PHAKEHKKTWDDDVWKVEKLLNPAFGKQRLSGITSRDVAL 161 Query: 122 GV--ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 E + + ++A L++++ + AV+ E + NP S E+ K + R +K+++ Sbjct: 162 LCSKEKARTSATTANHLLSTLKRMLNLAVKWELLEKNPASSQEKFKEPPQRERYLSKDEL 221 Query: 180 QQFKSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237 +F S E A LL++G R + ++ + I T + + Sbjct: 222 PRFLSALDEEDDGLSVAAIRMLLFTGCRRGEVLSLKWNEVRLDEDCILLLDTKNGRSRMV 281 Query: 238 P-----DGFMKLLAMTPIGKETFFINNDKQKMNATQ-------FSIWFKAKATKAGVN-K 284 ++ L + + F+ +AGV Sbjct: 282 HLNARAKAVVEELHENRDKEVRTAASEYVFPSRQGTKKGHLFDLRKPFEKACQRAGVENF 341 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 H +R A+++ GA+ ++ G + + + Y +D Sbjct: 342 RIHDLRHTFASMAVRGGASLFDVQKLLGHQDIAMTQRYAHLSD 384 >gi|313673072|ref|YP_004051183.1| integrase family protein [Calditerrivibrio nitroreducens DSM 19672] gi|312939828|gb|ADR19020.1| integrase family protein [Calditerrivibrio nitroreducens DSM 19672] Length = 300 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 38/263 (14%), Positives = 99/263 (37%), Gaps = 23/263 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVE---SRKHTPSSAIQFLTS 139 + + ++ S+ + ++I D D ++I +R + R + SS + +++ Sbjct: 18 KNASDHTIRSYMNDLVELINFVKDESIDIKEIDFFALRGYITTLYDRSLSKSSIERKIST 77 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLA 195 ++ FK+ ++ Y+ N ++ PK++ + + + +D+ + + + L Sbjct: 78 IKSFFKFLTQKGYLEENHARMLKFPKKEKKLFKVFNIDDLFTLLELPDKNTPQGIRDALL 137 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT------ 248 E + +G+R S+ + + ++ + + L + + + Sbjct: 138 MELMYGTGVRVSELVGIKIDDIDFQGLRVRVRGKGKKERMIPLAEFHIDFIKKYLATRDD 197 Query: 249 -----PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301 I + FIN + ++ + AG+ S H R AT ++G Sbjct: 198 IPKSRTIKTDKLFINKNGTSLSDRSVRRIVEKYLKMAGLPLDFSPHSFRHSFATHMLESG 257 Query: 302 ATAHELMATYGWKTVDQAETYTK 324 A + + G ++ + YT Sbjct: 258 ADLRTIQSLLGHSSLSTTQKYTH 280 >gi|119026091|ref|YP_909936.1| tyrosine recombinase xerD [Bifidobacterium adolescentis ATCC 15703] gi|154488864|ref|ZP_02029713.1| hypothetical protein BIFADO_02172 [Bifidobacterium adolescentis L2-32] gi|118765675|dbj|BAF39854.1| tyrosine recombinase xerD [Bifidobacterium adolescentis ATCC 15703] gi|154083001|gb|EDN82046.1| hypothetical protein BIFADO_02172 [Bifidobacterium adolescentis L2-32] Length = 317 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 44/298 (14%), Positives = 92/298 (30%), Gaps = 42/298 (14%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126 ++ LI ++ LA + +++S + G D +TT+ + + Sbjct: 4 IERLIDQFLAYIDVERGLAKATVRAYDSDLRKYNGWLATQGIQDLNAVTTQDVERYIAFL 63 Query: 127 KHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT-------- 175 + SA + L S+ ++A+ + V+ + V+ PK T T Sbjct: 64 DDSGESARSKARRLASIHAFHRFALNEHVVSNDVAAQVKAPKGATTLPDVLTVDEVASLL 123 Query: 176 ----------KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225 + + + + EF+ +G R S++C A + + + Sbjct: 124 DAIPVSQNRPQSEGMADMPDDPAMLRDKALLEFMYATGARVSEACGANLDDVDLESNVAR 183 Query: 226 -TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--------------NATQFS 270 K V + + +A + K + Sbjct: 184 LMGKGSKQRLVPVGSYACEAIARYLKNGRPQLESKAKGPTERRALFLNKRGKRLSRQSVW 243 Query: 271 IWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 +A +A ++K H +R AT GA + G +V + YT + Sbjct: 244 EIIRAAGERAHIDKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVS 301 >gi|114566153|ref|YP_753307.1| recombinase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337088|gb|ABI67936.1| tyrosine recombinase XerD subunit [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 296 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 47/275 (17%), Positives = 101/275 (36%), Gaps = 25/275 (9%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRKHT 129 I ++ ++ LA NSRI+++ + + + + I+ I + + + Sbjct: 5 IEDFISYLNFEKGLAANSRIAYKRDLLKFQQFLQENSRALSPQNISKHDIMAFLAWQLDQ 64 Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQF 182 SS + L+S++ +K+ + + + NP +E PK K + + + E+ M+Q Sbjct: 65 GAAHSSIARSLSSIKSYYKFLILEGELDKNPSSDLETPKIKRKLPQVLSIEEVDKLMEQP 124 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 G + R E + +G+R S+ V+ L ++ + + Sbjct: 125 NPVVPLGIRDRAMLELMYGTGIRVSELLSLQVEDLNPTAGFLRCMGKGRKERIIPVNQTS 184 Query: 242 MKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 + + + T F+N + ++ F KA + K + H + Sbjct: 185 IDWVQRYLARVRNSLVKNPLERTLFLNARGRPLSRQGFFKILGNYVEKAELEKEVTPHTL 244 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT + GA + G + + YT Sbjct: 245 RHSFATHLLENGADLRAVQEMLGHADISTTQIYTH 279 >gi|163737292|ref|ZP_02144710.1| Integrase [Phaeobacter gallaeciensis BS107] gi|161389896|gb|EDQ14247.1| Integrase [Phaeobacter gallaeciensis BS107] Length = 370 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 68/358 (18%), Positives = 115/358 (32%), Gaps = 26/358 (7%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 + RHGK Y R+ + + + + E + K Sbjct: 7 KGFKIFKDRHGKQRCYHRETGHK---VDLTDAPIGSAKFFAECETIRAIAEAQRAKAPKA 63 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--R 126 TL LI Y ++ H+ +LA +R + D + D I T I + + Sbjct: 64 GTLGGLIQSYFETEHYQNLAEATRRDYRKCAD-FLEPIRDTPIHVIDTPLIAGIHDKAAK 122 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS---VERPKRKTEGIRPWTKEDMQQFK 183 K A T + +F++ + + ++ N RP+ + RPWT E+ Sbjct: 123 KIGWRRANMVRTLLSEVFRYNIPKGLISANFAKDVIPKRRPRDRAYANRPWTIEERDTVL 182 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 R+A ++ +GL SD+ R + KTG + + + Sbjct: 183 GK--AKPHVRVALALMMNTGLDPSDALRLRNDQVDGGTIWGVRGKTGEEVAIPVSPTLQA 240 Query: 244 LLAMTPIGKET----FFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATI 296 L P + FK G+ + G+R AT Sbjct: 241 ALNRMPNHDAETVLSNSRGEAWTYNGFSTVWHRFKTALENEGLIEKGLTLKGLRHTVATT 300 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA-----DRIRLGI---KNSRRISSVVDSD 346 +AG + G KT A Y++ A +R + +N RR SV S Sbjct: 301 LREAGLDERRIADLLGQKTPSMARHYSRSANLANKNRETMATLEEENRRRAESVKPSQ 358 >gi|150009884|ref|YP_001304627.1| tyrosine type site-specific recombinase [Parabacteroides distasonis ATCC 8503] gi|256838407|ref|ZP_05543917.1| tyrosine recombinase XerD [Parabacteroides sp. D13] gi|262382840|ref|ZP_06075977.1| tyrosine recombinase XerD [Bacteroides sp. 2_1_33B] gi|298374238|ref|ZP_06984196.1| tyrosine recombinase XerD [Bacteroides sp. 3_1_19] gi|301312384|ref|ZP_07218300.1| tyrosine recombinase XerD [Bacteroides sp. 20_3] gi|149938308|gb|ABR45005.1| tyrosine type site-specific recombinase [Parabacteroides distasonis ATCC 8503] gi|256739326|gb|EEU52650.1| tyrosine recombinase XerD [Parabacteroides sp. D13] gi|262295718|gb|EEY83649.1| tyrosine recombinase XerD [Bacteroides sp. 2_1_33B] gi|298268606|gb|EFI10261.1| tyrosine recombinase XerD [Bacteroides sp. 3_1_19] gi|300829567|gb|EFK60221.1| tyrosine recombinase XerD [Bacteroides sp. 20_3] Length = 301 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 50/296 (16%), Positives = 106/296 (35%), Gaps = 24/296 (8%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKH 128 K +I+ Y SL+ NS ++ + D+++R + D D ++I+ ++ + + Sbjct: 5 KDIINRYNTYLRLEKSLSANSIDAYLTDLDKLLRFAEDEKKDVKEISYDDLQQFIAQLRD 64 Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 P S + ++ ++ +++ + Y+ +P +E PK + T ++ Sbjct: 65 IGIHPRSQARIISGIKSFYRFLLLDNYITNDPTELLESPKIGLKLPEVLTVNEINSILDT 124 Query: 186 W----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--------- 232 EG + R E L GLR S+ + I+ + G+ Sbjct: 125 IDLTLPEGQRNRAMLEVLYSCGLRVSELTGLRYSDIYPKEGFIRVEGKGSKQRLVPISEV 184 Query: 233 --ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288 ++ + + ++ F++ ++ K + AG++K S H Sbjct: 185 ALREIKNYLYDRNSVVVKKGFEDILFLSRRGTALSRIMVFHIIKQQTEAAGIHKNVSPHT 244 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 R AT + GA + G + + E YT DR L + Sbjct: 245 FRHSFATHLLEGGANLRAIQEMLGHEKITTTEIYTH-IDREFLRKEILEHHPRSRP 299 >gi|293374275|ref|ZP_06620603.1| site-specific recombinase, phage integrase family [Turicibacter sanguinis PC909] gi|292647108|gb|EFF65090.1| site-specific recombinase, phage integrase family [Turicibacter sanguinis PC909] Length = 374 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 45/368 (12%), Positives = 99/368 (26%), Gaps = 44/368 (11%) Query: 15 RTRHGKIIYYFRKG--HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 R R K YYF G G+ + T A + + TL+ Sbjct: 6 RKRGDKWSYYFTIGKVDGKYKKKEKSGFVTKKEAETALREALRQYETDGVVSKHSDYTLQ 65 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 I + + L + +++ I + G + +K T ++ + T + Sbjct: 66 EYIQYWFDTIAINYLKFETMHNYKCVATKHIYPEIGHLNIKKATPTVLQKYFSEKLKTYN 125 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE-----DMQQFKSFW 186 A ++ +R + + + + T + Sbjct: 126 -ADSIVSIIRNILSNTFKLAVKQNILPRNPMAQIELKSQKQKETAMRVVNKNDIDNLLLE 184 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------------- 232 + ++ + F +++G R + + ++ K Sbjct: 185 IKDTRYYIPFIIAIHTGARRGEILGLTWDDVNFENNTLTINKILQYQQGNGLVLSSTKTS 244 Query: 233 ------------ITVELPDGFMKLLAMTPIGKETF------FINNDKQKMNATQFSIWFK 274 + +LL G F N+D +N S + K Sbjct: 245 SSVRTVLMTSTLVHELQEYRKSQLLRKEYYGNHYFSEQSFVCCNDDGSPINPLSLSQFTK 304 Query: 275 AKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGI 333 + K G H +R AT+ +A + G + + Y+ + +L Sbjct: 305 KISQKYGYRFRFHDLRHTHATMLLEADVNIKVIQQRLGHENIKTTLNVYSHLTN--KLDE 362 Query: 334 KNSRRISS 341 + + Sbjct: 363 DAINKFDN 370 >gi|260893180|ref|YP_003239277.1| tyrosine recombinase XerD [Ammonifex degensii KC4] gi|260865321|gb|ACX52427.1| tyrosine recombinase XerD [Ammonifex degensii KC4] Length = 302 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 42/285 (14%), Positives = 89/285 (31%), Gaps = 27/285 (9%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV------ 123 L+ + E+ + LA N+ ++ + + + +R Sbjct: 2 LEKWLEEFLEFLRVERGLADNTIAAYRTDLKHFCAFVARRQFS-LDPSSLRDACLCYLYE 60 Query: 124 -ESRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + + S+ + L +++ + Q Y+ +P + PK + E++++ Sbjct: 61 LNAAGYLASTVARRLAALKSFCAYLATQAGYLPWDPAEELSSPKIPERLPKVLRPEEVER 120 Query: 182 FKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE 236 + + + R E +G+R S+ V HL ++ K G V Sbjct: 121 LLTAPRTNTPQGLRDRALLELAYATGMRVSELVGLDVDHLNLEAGYVRVLGKGGKERIVP 180 Query: 237 LPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK-- 284 + L F+N ++ K A +AG+ Sbjct: 181 VGRVAQHYLREYLEKAWPRLVKDRRTSALFVNRRGGRLTRQAVFKLLKDYARQAGLTSAP 240 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 S H +R AT + GA + G ++ + YT Sbjct: 241 SPHTLRHSFATHLLENGADLRVVQELLGHVSISTTQIYTHLTSTR 285 >gi|114561848|ref|YP_749361.1| tyrosine recombinase XerD [Shewanella frigidimarina NCIMB 400] gi|114333141|gb|ABI70523.1| tyrosine recombinase XerD [Shewanella frigidimarina NCIMB 400] Length = 305 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 45/276 (16%), Positives = 98/276 (35%), Gaps = 23/276 (8%) Query: 74 LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKHT- 129 LI+++ L+ N+ +S+ + R D ++ +R + R Sbjct: 15 LINQFLDDLWSTNGLSDNTLVSYRTDLQNAERYILTKGKDLLQVDQALLRDYLAERFDKQ 74 Query: 130 --PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 SS + L+S+R + + + ++ ++ +P ++ PK + ++ + S + Sbjct: 75 FAKSSTARLLSSLRRFYAYLLVKQKISQDPTALIKSPKLVRQLPDTLSEAQIDNLLSEPN 134 Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVE------ 236 + + E L +GLR ++ ++ + ++ G V Sbjct: 135 IDDPIEHRDKAMLELLYATGLRVTELVSLTMEQISLRQGLVRVMGKGGKERLVPLGELAI 194 Query: 237 ----LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290 F + ++ + F + Q M F K A +AG+ + S H +R Sbjct: 195 TAVEQYIKFARAELLSMKQSDVLFPSRRGQMMTRQTFWHRIKLYAARAGIQCHLSPHTLR 254 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 AT + GA + G + + YT A Sbjct: 255 HAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVA 290 >gi|300871744|ref|YP_003786617.1| tyrosine recombinase XerD [Brachyspira pilosicoli 95/1000] gi|300689445|gb|ADK32116.1| tyrosine recombinase, XerD [Brachyspira pilosicoli 95/1000] Length = 307 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 43/282 (15%), Positives = 102/282 (36%), Gaps = 23/282 (8%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKH 128 L+ L+ E+ + A ++ S+ + I+ D D+ T IR S K+ Sbjct: 13 LENLLEEFADYLQTLNYAAHTINSYTKDLKEYIKFLEDNNIDFNDATHYTIRDYFASLKN 72 Query: 129 TP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 ++ + L+S++ +K+ +R Y ++++ PKR+ + + D+ + Sbjct: 73 KKLKNATTSRHLSSIKKFYKYLIRNGYSDKTRIINMKSPKREEHIAKFLSLNDIDKILEI 132 Query: 186 WSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII-------- 233 E + ++ F+ GLR S+ + + +++ G+ + Sbjct: 133 DDENDFTIIRDKMMAIFMYAIGLRASELISIKLNMMHKGSTTLRILGKGSKVREIPLIPI 192 Query: 234 ---TVELPDGFMKLLAMTPIGKETF-FINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287 +L ++ + F+N + ++ K A + + S H Sbjct: 193 IYDNWDLYMQKRAIIQREYGSNNNYLFVNRFGKPISDRSVRNSMKRLMRMANISVDFSPH 252 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R AT + A + G +++ + YT + Sbjct: 253 TLRHTFATHLLNNDAEIRGVQELLGHESISTTQRYTHVTNDR 294 >gi|288800351|ref|ZP_06405809.1| integrase/recombinase XerD [Prevotella sp. oral taxon 299 str. F0039] gi|288332564|gb|EFC71044.1| integrase/recombinase XerD [Prevotella sp. oral taxon 299 str. F0039] Length = 311 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 58/307 (18%), Positives = 111/307 (36%), Gaps = 28/307 (9%) Query: 65 RKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRS 121 K+ T+ +I Y + + ++N+ ++++ + +I + D K+ Sbjct: 2 EKENQTIAKVIRSYLRYLKLERNYSINTIEAYKNDLEHLITYCQENNRDVLKMQIADFEH 61 Query: 122 GV---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 RK SS + L+ +R +++ V + NP +E P + E+ Sbjct: 62 FAFILHERKIGASSQARILSGVRSFYRYLVIDGILEDNPTELLESPILGEHLPEVLSTEE 121 Query: 179 MQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTII 233 + Q ++ EG + R E L GLR S+ + ++ I+ Sbjct: 122 VDQLQNSIDLSKWEGHRNRAIIEILFSCGLRVSELINLKLSNIYIIERYIRVIGKGSKER 181 Query: 234 TVEL----------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 + + ++ + P ++ F+N + T I K +A AG+ Sbjct: 182 LIPISDKALYELELWFRDRNIMNIKPGEQDYVFLNRRGAHLTRTMILIMIKKQAELAGIK 241 Query: 284 KS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 K+ H +R AT GA + A G ++V E YT DR L + I Sbjct: 242 KTISPHTLRHSFATELLRGGADLIAIQAMLGHESVSTTEIYTH-IDRESL----RKAIIE 296 Query: 342 VVDSDDP 348 + P Sbjct: 297 HHPRNKP 303 >gi|162447539|ref|YP_001620671.1| site-specific tyrosine recombinase [Acholeplasma laidlawii PG-8A] gi|161985646|gb|ABX81295.1| site-specific tyrosine recombinase [Acholeplasma laidlawii PG-8A] Length = 301 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 47/270 (17%), Positives = 95/270 (35%), Gaps = 25/270 (9%) Query: 86 SLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIR---SGVESRKHTPSSAIQFLT 138 L+ N+ ++ D I +KHI ++ + + + + LT Sbjct: 17 GLSKNTIDAYMRDLKDYESFLDKYHKLKDVDNIQSKHIEGYLKSIKKKGLSAKTISRKLT 76 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRL 194 S++ K+ + ++ V + + RPK + + +++ G + Sbjct: 77 SIKSFHKFLLMEKEVDEDVTHKIARPKIEKTLPTVLSVDEVISILEVIDKSTTLGLRNMA 136 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFMKLLAMT----- 248 E + SGLR S+ ++ + + I T K V + D + + Sbjct: 137 LLELIYGSGLRVSELLNIKLKDIHMQQSYVIVTGKGSKERMVPISDMAIIAIRNYLVKAR 196 Query: 249 ----PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301 + FINN + ++ F K A++A ++ S H +R AT + G Sbjct: 197 DDLIKEKTDYLFINNQGKTLSRVGFFKVLKKLASEANLDPEKVSPHTLRHSFATHLLENG 256 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRL 331 L G + + + YT + RL Sbjct: 257 MDLRSLQNLLGHEDISTTQIYTH-ISQSRL 285 >gi|114771054|ref|ZP_01448494.1| tyrosine recombinase XerD [alpha proteobacterium HTCC2255] gi|114548336|gb|EAU51222.1| tyrosine recombinase XerD [alpha proteobacterium HTCC2255] Length = 308 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 45/288 (15%), Positives = 101/288 (35%), Gaps = 33/288 (11%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGV---ESRK 127 LI + ++ H + + N+ ++++ + R K K I + + ++ Sbjct: 7 LIDNFLETIHAERNASKNTLLAYKRDLEAFTRFLSKKRIDLYKANRKDIENYIISLDNHG 66 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185 + S+ + L++++ ++++ + + NP ++ PK K + ++ ++ + Sbjct: 67 MSESTRARHLSTIKQIYRYGYDESLIKDNPSNEIKGPKSKRKLPNYLSENEINKLLDTST 126 Query: 186 -----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD 239 + + L +G+R S+ V ++ N + K G V L Sbjct: 127 QIGRSPRDKKRNTCLMHVLYATGMRVSELVSLPVISVRGNPEMLLIKGKGGKERLVPLST 186 Query: 240 GFMKLLAMTPIGKETFFINNDKQ----------------KMNATQFSIWFKAKATKAGV- 282 +A + + N K+ + +F ++ K KAG+ Sbjct: 187 PAKMAIAAYLVDWNSQQEINKKKGLQESKFLFPSHSKLGHITRVRFYVFIKELCIKAGIS 246 Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 S H +R A+ GA + G V E YT D Sbjct: 247 PNKVSPHTLRHAFASHLLANGADLRVIQMLLGHADVATTEIYTHVLDE 294 >gi|315092744|gb|EFT64720.1| tyrosine recombinase XerD [Propionibacterium acnes HL060PA1] Length = 306 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 44/279 (15%), Positives = 90/279 (32%), Gaps = 30/279 (10%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHI---RSGVESRK 127 + +Y + L+ N+ ++ + G ++T + R ++ Sbjct: 9 VEDYLRHLVVERGLSDNTVQAYRRDLLRYQEYLGSRGIGSLAEVTRVDVEEFRRHLDHIG 68 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 P+S + + ++R L ++AV V + + R + T + ++ + Sbjct: 69 LAPASVTRCVVAVRNLHRFAVGSGQVQADVTAGMSPGTRSRRLPKALTMDQVESLLAAPD 128 Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-----TQKTGTIITVELP 238 EG + E L +G R S+ C V ++ + K V L Sbjct: 129 TSTVEGLRDVALLELLYGTGARVSEVCALDVDDIRRVLDDPDLGLRLIGKGDKERIVPLG 188 Query: 239 DGFMKLLAMTPIGKETFFI-----------NNDKQKMNATQFSIWFKAKATKAGVN---K 284 K + I + N ++++ + AG++ Sbjct: 189 SYAAKAVDAWLIRGRPAWAEIGNGEHALLLNTRGRRLSRQSAWAVIRRAGEAAGLDVEHL 248 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 S H +R AT D GA + G +V + YT Sbjct: 249 SPHSLRHSYATHLLDGGADVRVVQELLGHSSVTTTQIYT 287 >gi|302038834|ref|YP_003799156.1| putative phage integrase [Candidatus Nitrospira defluvii] gi|300606898|emb|CBK43231.1| putative Phage integrase [Candidatus Nitrospira defluvii] Length = 361 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 46/321 (14%), Positives = 106/321 (33%), Gaps = 13/321 (4%) Query: 17 RHGKIIYYFRKGHGRRIRLP-YPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75 + K+ + +GR++R + A ++ + + + + ++ T + ++ Sbjct: 5 KRNKVWWMSFIHNGRQVRRSTDTTDRRLAEAILAKVRVKLIEGRHFDRLEEENRTFQEMM 64 Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSS 132 Y A SR+ ++ + ++ G +I+ K + S R+ P++ Sbjct: 65 ERYVAE-RATLKAPKSRLRDQAALNHLLPVFGQKLLSEISPKQLASYKAQRRIEQAAPAT 123 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 + L +R F A+R+ + ++ + W + + Sbjct: 124 INKELQLVRHAFNLAMREWEWCRENPMHRVSLEQVRNEVDRWLTPEEEDRLMAA-SSPWL 182 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--IITVELPDGFMKLLAMTPI 250 R F L +G+R + Q + + ++ ++ T+ L +LLA Sbjct: 183 REIIVFALNTGMRQGEILNLQWQDVDFSRGTLIVMQSKNGTRRTIPLNTKVYELLASKQA 242 Query: 251 GKETFFINNDKQKMNA----TQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAH 305 K + F +AG+ H +R AT G + Sbjct: 243 ATGLSRGPVFKTPLGNLLQVRFLVREFCEARNRAGIPDFRFHDMRHTFATRLVQRGVDLY 302 Query: 306 ELMATYGWKTVDQAETYTKGA 326 ++ G KT + Y + Sbjct: 303 KVQRLLGHKTNLMTQRYAHHS 323 >gi|210622955|ref|ZP_03293460.1| hypothetical protein CLOHIR_01408 [Clostridium hiranonis DSM 13275] gi|210153921|gb|EEA84927.1| hypothetical protein CLOHIR_01408 [Clostridium hiranonis DSM 13275] Length = 377 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 48/371 (12%), Positives = 106/371 (28%), Gaps = 44/371 (11%) Query: 15 RTRHGKIIYYFRKG--HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 R + + + +G+R R+ T A + + ++ T Sbjct: 5 RKKGDRWYFSVELPQENGKRKRVERRGGKTKKEA-QEKMKLFEAEVLKNGYKKECKMTFD 63 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT-- 129 L + + + ++ ++ Y+ I G++ I + + K Sbjct: 64 ELYNIWFNEYVLNNCKESTTNNYARYYKKHIKPILGNYKVSDIKARVLSDFFNKLKEEDK 123 Query: 130 -PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 SSA + +A+ + N + + + DM+ F++ Sbjct: 124 CHSSANIIRVVISSCLDYAIFPLEIIENNSCKFIKFPKFKKTKDKKDIIDMKDFETILDI 183 Query: 189 GSQPRLAFEFLLY---SGLRCSDSCRAGVQHLQNNIFSIKTQK----------------- 228 GS L +GLR ++ + + + I + Sbjct: 184 GSSKHNFNNMCLLLLHTGLRIGEALGLQWEDIDFDNKIIHVRHTLIAPNVRECKLSTPKT 243 Query: 229 TGTIITVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFK 274 +I + D K+ F + D ++ F+ Sbjct: 244 KTSIRDIYFNDTVEKVFKNIKKSQNENRLKFGVLYNCNNMVFTHEDGSFLDHHHFTNMVA 303 Query: 275 AKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGI 333 K +N S H R AT+ AGA ++ A G + Y + + + Sbjct: 304 KINRKTNINFSMHTFRHTHATMLLQAGANMKDVQARLGHADISTTMNIYVQDTEESK--K 361 Query: 334 KNSRRISSVVD 344 K + + ++ Sbjct: 362 KALDKFNDYIE 372 >gi|218961859|ref|YP_001741634.1| Tyrosine recombinase xerD [Candidatus Cloacamonas acidaminovorans] gi|167730516|emb|CAO81428.1| Tyrosine recombinase xerD [Candidatus Cloacamonas acidaminovorans] Length = 313 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 55/304 (18%), Positives = 101/304 (33%), Gaps = 37/304 (12%) Query: 62 NSPRKKPTTLKWLISE--------YRKSAHW-----GSLAVNSRISFESYFDQII----R 104 ++ KKP T+ I E Y S + +A NS S+ + + Sbjct: 2 STSLKKPRTITAGIEEELSPALKSYLSSFVYHLKVERGMAKNSIESYRRDIGDFLLFCPK 61 Query: 105 KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164 + G+++ IT + +T S + ++ F + + V R Sbjct: 62 EIGNYETDDITKYLLSLQEIGLLNT--SVARKRVALGQFFGFLKDNDIETKVDMDLVPRI 119 Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220 K + T E+M Q + + + +L E L +G+R S+ + L Sbjct: 120 KLGVQLPDVLTVEEMFQLLNSLPVKTPLEIRNKLMMELLYATGMRISELLSISLHDLNLT 179 Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF-----------FINNDKQKMNATQF 269 I G+ + L + + F+NN ++M+ F Sbjct: 180 ERVILVHGKGSKQRYVPYVDTLDELFAKYLKQSRPILLKLKQSELLFLNNRGERMSRMGF 239 Query: 270 SIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 + +A + K + H R AT + G + A G ++D + YT D Sbjct: 240 WKILRKAVLEANIKKEVTPHTFRHSFATHLLEGGVNLRIVQALLGHSSIDTTQIYTH-ID 298 Query: 328 RIRL 331 RL Sbjct: 299 MKRL 302 >gi|148380317|ref|YP_001254858.1| phage integrase [Clostridium botulinum A str. ATCC 3502] gi|148289801|emb|CAL83909.1| phage integrase [Clostridium botulinum A str. ATCC 3502] Length = 331 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 44/265 (16%), Positives = 87/265 (32%), Gaps = 13/265 (4%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSS 132 + Y S L++ + +++ I T +R + R SS Sbjct: 59 LQIYLASKKLDGLSIKTLRNYQYNLAIFANHL-RKPLVAINTMDLRMFLAVRCKSMKQSS 117 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 ++ ++ F W +EY+ NP +++ K T+E+++ + + Sbjct: 118 VNGQISILKSFFGWLADEEYIPKNPAKKLKQTKEPKRLRHAMTEEEIELLRQACKTD-RE 176 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMT--- 248 + EFL+ +G R S++ + S K V LL Sbjct: 177 KALVEFLISTGCRLSEAVGVNKDDINWYEMSLNVIGKGDKERKVYFSTKAKILLKKYLLA 236 Query: 249 ---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGAT 303 ++ K A++AG+NKS H R AT +AG Sbjct: 237 RSDENIALFVTSKKPYGRLGGRSVQREIKKIASRAGINKSIYPHLFRHSFATNKLNAGMP 296 Query: 304 AHELMATYGWKTVDQAETYTKGADR 328 + G ++ + Y + ++ Sbjct: 297 MPVIQHLMGHESPATTQIYAELSEE 321 >gi|323343537|ref|ZP_08083764.1| integrase/recombinase XerD [Prevotella oralis ATCC 33269] gi|323095356|gb|EFZ37930.1| integrase/recombinase XerD [Prevotella oralis ATCC 33269] Length = 317 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 44/277 (15%), Positives = 93/277 (33%), Gaps = 27/277 (9%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG-------DFDYRKITTKHIRSGVE 124 ++ Y + + + ++ +++ +I + + ++ Sbjct: 12 DVVKSYVRYLKLERNYSPHTLEAYQHDLSWLIGYCAQQDLNVFELKLADLERFAVQIH-- 69 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 P++ + L+ +R +++ V Y+A +P +E P + ++ + Sbjct: 70 EHGVGPATQARILSGVRSFYRFLVLDGYIAADPTELLESPHIGEHLPEVLSAAEVDMLED 129 Query: 185 FW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239 EG + + E L GLR S+ + L ++ K V + Sbjct: 130 SIDLSKWEGQRNKAIIEMLFSCGLRVSELVNLKLSDLYIEEEYVRVLGKGDKERLVPISP 189 Query: 240 GFMKLLAMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKAGVNKS--AH 287 +K L + I + I N + T I K +A AG+ K+ H Sbjct: 190 KAIKELKLWFIDRNLMQIKPGEIDFVFLNRRGSHLTRTMILIMIKRQAEAAGIRKTISPH 249 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT GA + G +++ E YT Sbjct: 250 TLRHSFATELLKGGADLRAIQEMLGHESIGTTEIYTH 286 >gi|148264429|ref|YP_001231135.1| tyrosine recombinase XerD [Geobacter uraniireducens Rf4] gi|146397929|gb|ABQ26562.1| tyrosine recombinase XerD subunit [Geobacter uraniireducens Rf4] Length = 295 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 45/283 (15%), Positives = 93/283 (32%), Gaps = 25/283 (8%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD---YRKITTKHIRSGVESRKH 128 + + L N+ ++ + + +T + V K Sbjct: 3 EYLDLFLNYLLVEKGLTKNTLEAYSRDLSVYLDFLAERKRTNPENVTALDVVEHVTRLKD 62 Query: 129 T---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + P S + L+++R+ ++ + + Y NP +E PK + +++ + Sbjct: 63 SGLAPRSRARALSAIRMFHRFLLVENYSVSNPTAIIETPKTVNRLPEVLSGREVESLLAT 122 Query: 186 WSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-----------KTQKTG 230 + R E L +GLR S+ ++ + + + Sbjct: 123 AKGDGTFEVRDRAMLEVLYATGLRVSELVSLKLRDVNIDAGYLLTMGKGEKERLVPMGES 182 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288 + +++L E F++ KM+ F K ++ AG+ K S H Sbjct: 183 ARTAIGEYLAGIRILLDRKGDNEYLFLSRLGGKMSRQAFWNIIKKRSGAAGIRKNISPHT 242 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +R AT + GA + G + + YT R RL Sbjct: 243 LRHSFATHLLENGADLRSVQIMLGHADLSSTQIYTHVT-RERL 284 >gi|325912006|ref|ZP_08174408.1| putative tyrosine recombinase XerC [Lactobacillus iners UPII 143-D] gi|325476191|gb|EGC79355.1| putative tyrosine recombinase XerC [Lactobacillus iners UPII 143-D] Length = 307 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 36/283 (12%), Positives = 93/283 (32%), Gaps = 26/283 (9%) Query: 72 KWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIR---SGV 123 + Y + ++N+ ++ + G D+ K++++ I + Sbjct: 5 DDFLKLYYNYLKNERNYSINTCKAYMDDLSEARTFFVENGGFIDWLKLSSRDIEIFIQYL 64 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 +K S+ + ++++R +++ ++ + +NP + + ++M + Sbjct: 65 AQKKDKRSTQSRKISTLRSFYRFLNKRNIIPVNPVELISLRGDHKKLPEFLYSDEMVKVL 124 Query: 184 S----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238 G + E +G+R S+ + + + I K V Sbjct: 125 KSISTTTPLGLRNMALLELFYATGMRVSEISNLKLDQIDFELNLILVHGKGNKDRYVAFG 184 Query: 239 DGFMKLLAM-----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-- 285 + L F+N++ ++ + K AG++ S Sbjct: 185 EEAKTALNNYLVEARKKLLLHKTDYGYVFLNSNGNRITSRGLEYIIKNIFLNAGISASVH 244 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 H +R AT + GA + G +++ + YT + Sbjct: 245 PHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTHVTKQ 287 >gi|120600077|ref|YP_964651.1| tyrosine recombinase XerD [Shewanella sp. W3-18-1] gi|146291994|ref|YP_001182418.1| tyrosine recombinase XerD [Shewanella putrefaciens CN-32] gi|120560170|gb|ABM26097.1| tyrosine recombinase XerD [Shewanella sp. W3-18-1] gi|145563684|gb|ABP74619.1| tyrosine recombinase XerD [Shewanella putrefaciens CN-32] Length = 300 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 48/284 (16%), Positives = 93/284 (32%), Gaps = 30/284 (10%) Query: 74 LISEYRKSA-HWGSLAVNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGVE---SR 126 LI + L+ N+ ++ + R G T +RS + + Sbjct: 10 LIDAFLDDLWSSKGLSDNTLSAYRTDLRHFDRHQQRHGTTLLEA-TAADVRSYLALRLEQ 68 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 +S+ + L+S+R + + + + +A++P +E PK ++ + + S Sbjct: 69 HFARTSSARLLSSLRRFYTYLLLTKQIAVDPMALIESPKLTRHLPHSLSESQVDRLLSEP 128 Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------- 229 + + + E L +GLR S+ ++ + ++ Sbjct: 129 NVDDPVECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVRIVGKGGKERLVPLGELA 188 Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAH 287 T + L +LL F K A +AG+ S H Sbjct: 189 VTEVEAYLKFARQELLGHKQSDVVFPSNRGQMM--TRQTFWHRIKLYALRAGIETALSPH 246 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +R AT + GA + G + + YT A R RL Sbjct: 247 TLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVA-RARL 289 >gi|312875471|ref|ZP_07735474.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF 2053A-b] gi|325912823|ref|ZP_08175201.1| putative tyrosine recombinase XerC [Lactobacillus iners UPII 60-B] gi|311088982|gb|EFQ47423.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF 2053A-b] gi|325477816|gb|EGC80950.1| putative tyrosine recombinase XerC [Lactobacillus iners UPII 60-B] Length = 307 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 37/283 (13%), Positives = 94/283 (33%), Gaps = 26/283 (9%) Query: 72 KWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIR---SGV 123 + Y + ++N+ ++ + G D+ K++++ I + Sbjct: 5 DDFLKLYYNYLKNERNYSINTCKAYMDDLSEARTFFVENGGFIDWIKLSSRDIEIFIQYL 64 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 +K S+ + ++++R +++ ++ + +NP + + ++M + Sbjct: 65 AQKKDKRSTQSRKISTLRSFYRFLNKRNIIPVNPVELISLRGDHKKLPEFLYNDEMVKVL 124 Query: 184 S----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238 G + E +G+R S+ ++ + + I K V Sbjct: 125 KSISTTTPLGLRNMALLELFYATGMRVSEIANLKLEQIDFELNLILVHGKGNKDRYVAFG 184 Query: 239 DGFMKLLAM-----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-- 285 + L F+N++ ++ + K AGV+ S Sbjct: 185 EEAKTALNNYLVEARKKILLHKTDYGYVFLNSNGNRITSRGLEYIIKNIFLNAGVSASVH 244 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 H +R AT + GA + G +++ + YT + Sbjct: 245 PHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTHVTKQ 287 >gi|210623381|ref|ZP_03293778.1| hypothetical protein CLOHIR_01728 [Clostridium hiranonis DSM 13275] gi|210153642|gb|EEA84648.1| hypothetical protein CLOHIR_01728 [Clostridium hiranonis DSM 13275] Length = 376 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 44/353 (12%), Positives = 107/353 (30%), Gaps = 37/353 (10%) Query: 15 RTRHGKIIYYFRKG---HGRRIRLPYP-HESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 + G +Y+ G G+R ++ S A + Sbjct: 12 VRKRGNTYHYYFDGKTIDGKRNKIEKSAKTSNKSEALKQLEKAIEEYYMSEIDFTLSDIS 71 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESR--- 126 ++ L ++ +++ ++ I+ + + I KHI++ ++ Sbjct: 72 FAEAREKFLSEYVANDLKDSTYTNYKQKLNKPQIKVLEIYLLKDIRAKHIQNIIDYMALN 131 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR-KTEGIRPWTKEDMQQFKSF 185 + + L ++ LF + +R E + NPC V P + + + Sbjct: 132 GFSKNMVKNTLRTISSLFNFCIRAELIKDNPCDKVVLPSKLTQPERKVALTNKEVKRILN 191 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-----------------NNIFSIKTQK 228 + + L+ LY+G+R + C +++ + Sbjct: 192 RFKNTHWYLSLMLPLYTGMRRGECCGLRWKNVDLDKGIIYVRENLTQDKGKKWIISTPKT 251 Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKAT 278 +I T+ +P ++ L ++ + + + Sbjct: 252 KSSIRTINIPLPLLEALKWQLERNKSNNVATNSDTHVLVRDNGSIITNDTLKYLSRVINY 311 Query: 279 KAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330 G+ + H +R AT+ + GA ++ G ++ Y D +R Sbjct: 312 DLGIKFNYHNLRHTYATLLIEKGANIKDVSVLLGHASIKTTMDIYVNNTDNMR 364 >gi|85059971|ref|YP_455673.1| site-specific tyrosine recombinase XerD [Sodalis glossinidius str. 'morsitans'] gi|84780491|dbj|BAE75268.1| phage integrase [Sodalis glossinidius str. 'morsitans'] Length = 299 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 41/280 (14%), Positives = 87/280 (31%), Gaps = 24/280 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRK 127 +I ++ S +LA N+ S+ + + + + Sbjct: 8 IIEQFLDSLWLERNLAENTLASYRLDLQALSAWLQSQQRDSLNASSADLQAFLADRLDHG 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---- 183 + +S+ + L++ R F++ R++ +P + PK + ++ + Sbjct: 68 YKATSSARLLSATRRFFQYLYREKRRGNDPSAGISAPKLPQRLPKDLSEAQVGDLLAAPA 127 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 + + E L +GLR S+ + + ++ V L + + Sbjct: 128 IADPVELRDKAMLEVLYATGLRVSELVGLTLSDVSLRQGVVRVIGKGDKERLVPLGEEAV 187 Query: 243 KLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289 + + N +KM F K A AG++ S H + Sbjct: 188 YWIEYYLEHGRPALTHGQSLDILFPSNRSRKMTRQTFWHRIKHYAILAGIDSERLSPHVL 247 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + GA + G + + YT A Sbjct: 248 RHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVATER 287 >gi|27363993|ref|NP_759521.1| site-specific tyrosine recombinase XerD [Vibrio vulnificus CMCP6] gi|161486657|ref|NP_933458.2| site-specific tyrosine recombinase XerD [Vibrio vulnificus YJ016] gi|320157372|ref|YP_004189751.1| tyrosine recombinase XerD [Vibrio vulnificus MO6-24/O] gi|34222790|sp|Q7ZAJ0|XERD_VIBVU RecName: Full=Tyrosine recombinase xerD gi|71153415|sp|Q7MNQ0|XERD_VIBVY RecName: Full=Tyrosine recombinase xerD gi|27360110|gb|AAO09048.1| tyrosine recombinase XerD [Vibrio vulnificus CMCP6] gi|319932684|gb|ADV87548.1| tyrosine recombinase XerD [Vibrio vulnificus MO6-24/O] Length = 305 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 41/280 (14%), Positives = 97/280 (34%), Gaps = 24/280 (8%) Query: 74 LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESR---K 127 + ++ + LA N+ S+ + ++++ + I+ ++ Sbjct: 14 YVEQFLDAMWMERGLAENTLASYRNDLMKLLQWMEANHYRLDFISLSGLQQYQSYLVDQD 73 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + +S + L+++R LF++ R++ A +P + PK + ++E + Sbjct: 74 YKQTSRARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPQRLPKDISEEQVDALLDAPD 133 Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM 242 + + E L +GLR ++ ++++ ++ G V + + + Sbjct: 134 PNDPVELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVTGKGGKERLVPMGENAI 193 Query: 243 KLLAMTPIGKET----------FFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289 + F + ++M F K A AG++ S H + Sbjct: 194 DWIETFIKQGRPALLGETSSDVVFPSKRARQMTRQTFWHRIKFYAVIAGIDTDHLSPHVL 253 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + GA + G + + YT A Sbjct: 254 RHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER 293 >gi|305667659|ref|YP_003863946.1| putative tyrosine recombinase [Maribacter sp. HTCC2170] gi|88709709|gb|EAR01942.1| putative tyrosine recombinase [Maribacter sp. HTCC2170] Length = 298 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 50/288 (17%), Positives = 94/288 (32%), Gaps = 26/288 (9%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR----KITTKHIRSGVES 125 + +++ L+ NS ++ ++++ D KI + +++ + Sbjct: 3 WNQALQDFQHYLRIERGLSDNSIKNYVWDVEKLVGFLDVNDMVISPIKIDKETVQAFIYE 62 Query: 126 RKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 T P S + ++ ++ F + ++Y NP +E PK + +++++ Q Sbjct: 63 IAKTINPRSQARIISGLKSFFNYLNFEDYRQDNPMDLLESPKIGRKLPDTLSEDEINQLI 122 Query: 184 SFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELP 238 EG + R E L GLR S+ + L F T K V + Sbjct: 123 DAIDLSKPEGERNRAMLETLYGCGLRVSELIGLKISDLFFEEDFIKVTGKGNKQRFVPIS 182 Query: 239 DGFMKLLAMTPIGKETFFINNDKQ-----------KMNATQFSIWFKAKATKAGVNKS-- 285 D K + + ++ K A K + KS Sbjct: 183 DFNKKYINIYRKEIRVHQKIQKGFDDILFLNRRGKQLTRAMIFTIIKQLAVKIDLGKSIS 242 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 H R AT GA + G +++ E Y DR L Sbjct: 243 PHTFRHSFATHLLQNGADLRAIQQMLGHESITTTEVYMH-VDRTHLAD 289 >gi|170693510|ref|ZP_02884669.1| tyrosine recombinase XerD [Burkholderia graminis C4D1M] gi|170141665|gb|EDT09834.1| tyrosine recombinase XerD [Burkholderia graminis C4D1M] Length = 322 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 43/294 (14%), Positives = 84/294 (28%), Gaps = 26/294 (8%) Query: 66 KKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 ++ + + L+ N+ ++ + Sbjct: 29 ASSASIDAFCDALWLEH----GLSRNTLDAYRRDLRLFSEWLAQTRGASLDIASEADLNA 84 Query: 125 ----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 RK +SA + L+ R + WAVR+ ++P L + K+ ++ ++ Sbjct: 85 YSAARRKDKSTSANRRLSVFRRYYGWAVREHRAKVDPTLRIRSAKQPPRFPSTLSEAQVE 144 Query: 181 QFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITV 235 + + R E + SGLR ++ + N ++ + Sbjct: 145 ALLGAPDIDTPLGLRDRTMLELMYASGLRVTELVTLKTVEVGLNEGVVRVMGKGSKERLI 204 Query: 236 ELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--N 283 + + F+ N + M QF K A AGV Sbjct: 205 PFGEEAHGWIERYLRDARPALLGARAADALFVTNRAEGMTRQQFWNIIKRHAAAAGVHAP 264 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 S H +R AT + GA + G + + YT A + Sbjct: 265 LSPHTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVARERLKSLHAVH 318 >gi|312792896|ref|YP_004025819.1| integrase family protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180036|gb|ADQ40206.1| integrase family protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 392 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 46/384 (11%), Positives = 105/384 (27%), Gaps = 56/384 (14%) Query: 15 RTRHGKI-----IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 + + G+ + Y KG+ ++ AL + + S Sbjct: 13 KRKDGRWCGFITVGYDEKGNQKKKFFYGRTRQEVADKINQALN----EIKQGISITDNNI 68 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128 TL+ ++ + ++ ++ +ES I G + + + +H++ + Sbjct: 69 TLENWLNIWLHQYKKNQISESTFDDYESIIKNHINPVLGKYKLKDLRPEHLQMLYNEKHK 128 Query: 129 TPSS---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 S + A++ + N + PK +E + Q+ Sbjct: 129 AGLSTKRIKHIHVILHSALNQAIKNGLIVRNVSEATTLPKNTSEKEMKVLTVEEQKRFLQ 188 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD------ 239 EG + + AF L +G+R + + + I + + I Sbjct: 189 VLEGERLKPAFVLALTTGMRLGEILALKWKDVDLENKKITIRNSVRRIKNRNEQSEIKTK 248 Query: 240 -----------------------------------GFMKLLAMTPIGKETFFINNDKQKM 264 + + + F + Sbjct: 249 TVLVLKEPKTENSGRIIPLPDVAYQELVNFKLLQEEEKRQAGSSYVDSGFVFTTKVGTPI 308 Query: 265 NATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYT 323 F F KAG+N + H +R AT +A + G + Y+ Sbjct: 309 EPRNFLRTFYRITEKAGLNINFHALRHTFATRLLEANTNPKVVQELLGHSDISTTLNIYS 368 Query: 324 KGA-DRIRLGIKNSRRISSVVDSD 346 D + I+ + + ++ Sbjct: 369 HVLFDTKQKAIEEIDNLMKNLTNE 392 >gi|37197590|dbj|BAC93429.1| site-specific recombinase XerD [Vibrio vulnificus YJ016] Length = 307 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 41/280 (14%), Positives = 97/280 (34%), Gaps = 24/280 (8%) Query: 74 LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESR---K 127 + ++ + LA N+ S+ + ++++ + I+ ++ Sbjct: 16 YVEQFLDAMWMERGLAENTLASYRNDLMKLLQWMEANHYRLDFISLSGLQQYQSYLVDQD 75 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + +S + L+++R LF++ R++ A +P + PK + ++E + Sbjct: 76 YKQTSRARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPQRLPKDISEEQVDALLDAPD 135 Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM 242 + + E L +GLR ++ ++++ ++ G V + + + Sbjct: 136 PNDPVELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVTGKGGKERLVPMGENAI 195 Query: 243 KLLAMTPIGKET----------FFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289 + F + ++M F K A AG++ S H + Sbjct: 196 DWIETFIKQGRPALLGETSSDVVFPSKRARQMTRQTFWHRIKFYAVIAGIDTDHLSPHVL 255 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + GA + G + + YT A Sbjct: 256 RHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER 295 >gi|14520598|ref|NP_126073.1| integrase/recombinase xerd [Pyrococcus abyssi GE5] gi|73920473|sp|Q9V1P5|XERCL_PYRAB RecName: Full=Probable tyrosine recombinase xerC-like gi|5457814|emb|CAB49304.1| xerC/D integrase/recombinase protein [Pyrococcus abyssi GE5] Length = 286 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 43/283 (15%), Positives = 99/283 (34%), Gaps = 18/283 (6%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 I E+ + N+ + Y + + G + + ++ + ++ Sbjct: 10 DDTIEEFATYLELEGKSRNTVRMYTYYISKFFEE-GHSPTAR-DALRFLAKLKRKGYSTR 67 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 S + +++ FK+ + ++ PK + T+E++++ + E + Sbjct: 68 SLNLVIQALKAYFKFEG-----LDSEAEKLKTPKMPKTLPKSLTEEEVRRIINAA-ETLR 121 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ------KTGTIITVELPDGFMKLL 245 RL L +GLR S+ C V+ + I + I+ L + L Sbjct: 122 DRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPISESLLSEIKRYL 181 Query: 246 AMTPIGKETFFINNDKQKM---NATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGA 302 F+ +++ + K KAGV + H +R AT + G Sbjct: 182 ESRNDDSPYLFVEMKRKRKDKLSPKTVWRLVKKYGRKAGVELTPHQLRHSFATHMLERGI 241 Query: 303 TAHELMATYGWKTVDQAETYTKGADRI-RLGIKNSRRISSVVD 344 + G + + YTK + + + +K ++ + S++ Sbjct: 242 DIRIIQELLGHSNLSTTQIYTKVSTKHLKEAVKKAKLVESIIG 284 >gi|312879576|ref|ZP_07739376.1| integrase family protein [Aminomonas paucivorans DSM 12260] gi|310782867|gb|EFQ23265.1| integrase family protein [Aminomonas paucivorans DSM 12260] Length = 294 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 50/288 (17%), Positives = 99/288 (34%), Gaps = 18/288 (6%) Query: 68 PTTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGV 123 +L L+ + + + + N+ +++ Q + G I +R + Sbjct: 2 ADSLSSLVDGFLDQLRYRLNRSENTTVNYAVDLAQFVEFLQLEGVEGPEGINRDRVRGFL 61 Query: 124 ESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 S P+SA + L+S+R + R+ V +P V PK R D+ Sbjct: 62 RSLMGYGFAPTSAARKLSSVRGFTAYLTREGLVEQDPAAGVRGPKLPANLPRALAYPDVV 121 Query: 181 QFKSFWSEG---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE 236 + G + RL E L SGLR S++ + L+ ++ K V Sbjct: 122 RLLEEGPGGRHAQRDRLMLELLYGSGLRVSEAAGLDWEDLEPEERWLRVLGKGQKGRAVP 181 Query: 237 LPDGFMKLLAMTPIGKETFFINNDK-----QKMNATQFSIWFKAKATKAGV-NKSAHGVR 290 G +LL T ++ A + G+ + H +R Sbjct: 182 FGRGVKELLQDWRPDPVTRQGPVFPGERGAPRITPRTIHRLVTQSARRVGLAGVTPHTLR 241 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSR 337 AT + GA+ + G +++ + Y +D+++ + + Sbjct: 242 HSFATHLLEGGASLRVVQELLGHESLLTTQRYLDITSDQMKRSYEQAH 289 >gi|309809264|ref|ZP_07703133.1| putative tyrosine recombinase XerC [Lactobacillus iners SPIN 2503V10-D] gi|308170377|gb|EFO72401.1| putative tyrosine recombinase XerC [Lactobacillus iners SPIN 2503V10-D] Length = 307 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 37/283 (13%), Positives = 94/283 (33%), Gaps = 26/283 (9%) Query: 72 KWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIR---SGV 123 + Y + ++N+ ++ + G D+ K++++ I + Sbjct: 5 DDFLKLYYNYLKNERNYSINTCKAYMDDLSEARTFFVENGGFIDWIKLSSRDIEIFIQYL 64 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 +K S+ + ++++R +++ ++ + +NP + + ++M + Sbjct: 65 AQKKDKRSTQSRKISTLRSFYRFLNKRNIIPVNPVELISLRGEHKKLPEFLYNDEMVKVL 124 Query: 184 S----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238 G + E +G+R S+ ++ + + I K V Sbjct: 125 KSISTTTPLGLRNMALLELFYATGMRVSEIANLKLEQIDFELNLILVHGKGNKDRYVAFG 184 Query: 239 DGFMKLLAM-----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-- 285 + L F+N++ ++ + K AGV+ S Sbjct: 185 EEAKTALNNYLVEARKKILLHKTDYGYVFLNSNGNRITSRGLEYIIKNIFLNAGVSASVH 244 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 H +R AT + GA + G +++ + YT + Sbjct: 245 PHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTHVTKQ 287 >gi|309804146|ref|ZP_07698224.1| putative tyrosine recombinase XerC [Lactobacillus iners LactinV 11V1-d] gi|315653524|ref|ZP_07906445.1| tyrosine recombinase XerC [Lactobacillus iners ATCC 55195] gi|308163729|gb|EFO65998.1| putative tyrosine recombinase XerC [Lactobacillus iners LactinV 11V1-d] gi|315489215|gb|EFU78856.1| tyrosine recombinase XerC [Lactobacillus iners ATCC 55195] Length = 307 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 37/283 (13%), Positives = 94/283 (33%), Gaps = 26/283 (9%) Query: 72 KWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIR---SGV 123 + Y + ++N+ ++ + G D+ K++++ I + Sbjct: 5 DDFLKLYYNYLKNERNYSINTCKAYMDDLSEARTFFVENGGFIDWIKLSSRDIEIFIQYL 64 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 +K S+ + ++++R +++ ++ + +NP + + ++M + Sbjct: 65 AQKKDKRSTQSRKISTLRSFYRFLNKRNIIPVNPVELISLRGEHKKLPEFLYNDEMVKVL 124 Query: 184 S----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238 G + E +G+R S+ ++ + + I K V Sbjct: 125 KSISTTTPLGLRNMALLELFYATGMRVSEIANLKLEQIDFELNLILVHGKGNKDRYVAFG 184 Query: 239 DGFMKLLAM-----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-- 285 + L F+N++ ++ + K AGV+ S Sbjct: 185 EEAKTALNNYLVEARKKLLLHKTDYGYVFLNSNGNRITSRGLEYIIKNIFLNAGVSASVH 244 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 H +R AT + GA + G +++ + YT + Sbjct: 245 PHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTHVTKQ 287 >gi|291287439|ref|YP_003504255.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809] gi|290884599|gb|ADD68299.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809] Length = 295 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 38/264 (14%), Positives = 91/264 (34%), Gaps = 21/264 (7%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS---SAIQFLTSMRV 142 LA NS ++ + I + + + + + + + + + + ++ + Sbjct: 19 GLAENSVKAYHQDIENYIA-FTLKPLVECGAQELVAYMTHLRKSGASIETVQRRISGISR 77 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFWSEGSQPRLAFEF 198 + + + ++ ++ NP V +P + + ++ + G + R+ FE Sbjct: 78 FYDFLIMEKIISSNPVGFVSKPSKWEKLPVFLNFDEVEKLINSPDMSSGLGYRDRIIFET 137 Query: 199 LLYSGLRCSDSCRAGV-QHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE---- 253 + +G+R S+ V + T K V + + + + Sbjct: 138 MYSTGMRISELVGLKVLDMDMHREIMKVTGKGSKQRFVPMYGSLAEKMKTYLDIRHDSLV 197 Query: 254 ------TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAH 305 F++ + +K++ + K +AG+ K S H +R AT GA Sbjct: 198 KERDEGWLFLSRNGKKLDREYVWMIIKKYCERAGIKKNVSPHTLRHSFATHLLTNGADLR 257 Query: 306 ELMATYGWKTVDQAETYTKGADRI 329 + G + E YT+ D Sbjct: 258 TIQVLLGHVDLSTTERYTQVTDNK 281 >gi|315152400|gb|EFT96416.1| tyrosine recombinase XerC [Enterococcus faecalis TX0031] Length = 299 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 37/280 (13%), Positives = 86/280 (30%), Gaps = 27/280 (9%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR- 126 L + Y + ++ +++ G+ +Y + +R+ + Sbjct: 6 WPELFARYL--IVERGYSEKTKKAYQEDIQHFFSFLKTSGNDNYLTVEHLDVRAYLSELY 63 Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 +++ +S + + S+R +++ ++ E + NP V K++ R + +++M Sbjct: 64 DQEYSRNSISRKIASLRSFYQFLLKNEAIQENPFSYVHMKKKQLRLPRFFYEKEMDALFE 123 Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD 239 + + E L +G+R S+ V + + K V Sbjct: 124 SAQGEQPLDLRNQALLEVLYGTGIRVSECANLTVDAVDFQASVLLVHGKGNKDRYVPFGS 183 Query: 240 GFMKLLAMT------------PIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKS 285 L F+N+ +++ T K V Sbjct: 184 FAQDALKDYLENGRALLMTKYQKKHPYVFVNHHGEQITPTGIEYVLNQLIKKSSLNVEIH 243 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 H +R AT + GA + G + + Y Sbjct: 244 PHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHV 283 >gi|15892414|ref|NP_360128.1| site-specific tyrosine recombinase XerD [Rickettsia conorii str. Malish 7] gi|34222952|sp|Q92IC9|XERD_RICCN RecName: Full=Tyrosine recombinase xerD gi|15619566|gb|AAL03029.1| integrase/recombinase [Rickettsia conorii str. Malish 7] Length = 306 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 48/286 (16%), Positives = 99/286 (34%), Gaps = 35/286 (12%) Query: 74 LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRK--ITTKHIRSGVESRKH-- 128 I+++ + +L+ NS +S++ + ITT++IR +E Sbjct: 3 FIAQFLEMLLAERALSKNSILSYKRDLFDFQNYLAKHKLSELNITTENIRDWIEYLASND 62 Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 S + +++++ +++ + + + A NP L+V+ PK + + + ++ Sbjct: 63 LQARSINRKISTIKSYYEFLISENHTAFNPVLNVDLPKYQNKLPEILSIAQIKSLLEHCS 122 Query: 187 ----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--------QNNIFSIKTQKTGTIIT 234 EG + L SGLR S+ + + + K Sbjct: 123 QDNSPEGIRLNAMIHLLYASGLRVSELVSLKLADILTNKTSKGEVRKIFSVLGKGNKERV 182 Query: 235 VELPDG----FMKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWFKAKATKAG 281 + + + K L + + N M F+I K+ A AG Sbjct: 183 IVINEQAVISIAKYLTIRGVFVNKAKPRNLIYLFPSSALAGYMTRQNFAILLKSAALYAG 242 Query: 282 VN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +N S H +R A+ + GA + G + + YT Sbjct: 243 LNPEYISPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTH 288 >gi|221068555|ref|ZP_03544660.1| tyrosine recombinase XerD [Comamonas testosteroni KF-1] gi|220713578|gb|EED68946.1| tyrosine recombinase XerD [Comamonas testosteroni KF-1] Length = 318 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 52/314 (16%), Positives = 97/314 (30%), Gaps = 27/314 (8%) Query: 45 PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR 104 A A P+ P+ + L I L+ N+ ++ R Sbjct: 3 EALKKARKSQIPEDWPQPLPQSQDA-LDEFIDALLLED---GLSHNTLSAYRRDLTAAAR 58 Query: 105 KSGDFDYRKITTKHIRSGVESR------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158 K+ + + ++ +S+ + LT +R F WA+R++ +A +P Sbjct: 59 WLAQLQPPKVLDAALEADLQGYFTARVEGTKATSSNRRLTVLRRYFHWALREKRIAADPT 118 Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGV 214 + + K+ + T+E ++ G + R E + SGLR S+ + Sbjct: 119 VRMLAAKQPPRTPKTLTQEQVEALLDAPDVETALGLRDRAMLELMYASGLRVSELVGVRM 178 Query: 215 QHLQ-----------NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK 263 L + +E + + E F+ Sbjct: 179 HELDLRSGVLRVTGKGRKERLVPFGQEAQHWLERYLQQARAAILGGQQTEEVFVTQRGAG 238 Query: 264 MNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321 M+ F + K A AG+ S H +R AT + GA + G + Sbjct: 239 MSRVMFWVIVKKCAQIAGINSPLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTTI 298 Query: 322 YTKGADRIRLGIKN 335 YT A + Sbjct: 299 YTHVARERLKALHA 312 >gi|227889898|ref|ZP_04007703.1| site-specific recombinase XerD [Lactobacillus johnsonii ATCC 33200] gi|268319571|ref|YP_003293227.1| tyrosine recombinase XerC [Lactobacillus johnsonii FI9785] gi|227849342|gb|EEJ59428.1| site-specific recombinase XerD [Lactobacillus johnsonii ATCC 33200] gi|262397946|emb|CAX66960.1| tyrosine recombinase XerC [Lactobacillus johnsonii FI9785] Length = 307 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 103/302 (34%), Gaps = 27/302 (8%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-------GDFDYRKITTKHIRSGV 123 LI +++ ++ + + N+ S+ + ++ G + + + Sbjct: 6 DKLIKQFQDYLNYERNYSKNTVNSYLNDLNEAKEFFKENGGFSGWDQVKSRDVEIFLQNL 65 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 ++ + ++ + ++S+R +++ V++E + +P ++ + + + + +++M+Q Sbjct: 66 ATQNRSRTTQARKMSSLRSFYRFLVKREVLDNDPMQTISLRLGEKKLPQFFYEKEMRQVF 125 Query: 184 S----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238 + R FE +G+R S+ + + ++ I K V Sbjct: 126 DSLAGHEKLVVRNRAMFELFYATGMRLSEMASLKLDQIDFDLKIILVHGKGNKDRYVPFG 185 Query: 239 DGFMKLLAMTPIGKE-----------TFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285 L F+NN QK+ + KAGV Sbjct: 186 KDAANALKEYCDESRLDLLGKNEDLGYVFLNNRGQKLTGRGIEYIMQQVFIKAGVGGKVH 245 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345 H +R AT + GA + G +++ + YT L + Sbjct: 246 PHMLRHSFATEMLNNGADLRSVQELLGHESLSTTQIYTHVT-MKHLQADYQKFFPRKDKK 304 Query: 346 DD 347 D+ Sbjct: 305 DE 306 >gi|315640716|ref|ZP_07895818.1| tyrosine recombinase XerC [Enterococcus italicus DSM 15952] gi|315483471|gb|EFU73965.1| tyrosine recombinase XerC [Enterococcus italicus DSM 15952] Length = 310 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 39/279 (13%), Positives = 96/279 (34%), Gaps = 26/279 (9%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIR---SGVES 125 E+ + + ++ ++ F Q + G D+ I + +R S + Sbjct: 16 QWFDEFSQYLIVERGYSEKTQAAYAEDFFQFLDFLEQSGSRDFLAIDYRDVRIYLSFLND 75 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS- 184 ++++ +S + + S+R +++ +++ + NP V K+ + R + ++++QQ Sbjct: 76 QEYSRNSISRKVASLRSFYQYLLKRMVLTENPFAYVHLKKKNQKLPRFFYEDELQQLFDS 135 Query: 185 ---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-------------IKTQK 228 + E L GLR S+ + + + Sbjct: 136 VKGTEPLEQRNLALLEILYGCGLRVSECAAITLTSIDWEHQILLVYGKGSKERIVPFNEH 195 Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSA 286 ++ + +G +LL + F+N+ + AT ++ ++ Sbjct: 196 ANKAMSHYIQNGRKELLTQFKKEHDYLFVNHLGSPVTATGIEYILNQLLKRSQLDSEIHP 255 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 H +R AT + GA + G + + Y Sbjct: 256 HKLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHV 294 >gi|88803246|ref|ZP_01118772.1| putative tyrosine recombinase [Polaribacter irgensii 23-P] gi|88780812|gb|EAR11991.1| putative tyrosine recombinase [Polaribacter irgensii 23-P] Length = 298 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 50/280 (17%), Positives = 90/280 (32%), Gaps = 25/280 (8%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR----KITTKHIRSGVES 125 K I EY+ L+ N+ S+ +++ I + I+ + Sbjct: 3 WKHAIKEYQMYLKIERGLSKNTVDSYTKDIEKLCLFFCKNKITISPININSDLIKQFIYD 62 Query: 126 RKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 P S + ++ +R F + + +EY +NP +E PK + +++D+ Sbjct: 63 IAKQINPRSQARIISGLRSFFDYLIFEEYRVLNPTDLLETPKIGKKLPDTLSQDDIDALF 122 Query: 184 SF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP 238 S +G + R E + GLR S+ V L I+ K V + Sbjct: 123 SAIDLSHPQGERNRTLLETMYSCGLRVSELITLKVSDLFFEEGFIRVLGKGNKERYVPIH 182 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMN-----------ATQFSIWFKAKATKAGVNK--S 285 +++ T + I K A K + K S Sbjct: 183 KDAESYISIYKRTIRTHIEPKKGFEDTLFLNRRGKGLTRQMIFIILKDLAFKIDLKKKIS 242 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 H +R AT GA + G +++ E Y Sbjct: 243 PHTLRHSFATHLLQNGADLRVIQQILGHESITTTEIYVHV 282 >gi|282853638|ref|ZP_06262975.1| tyrosine recombinase XerD [Propionibacterium acnes J139] gi|282583091|gb|EFB88471.1| tyrosine recombinase XerD [Propionibacterium acnes J139] gi|314967052|gb|EFT11151.1| tyrosine recombinase XerD [Propionibacterium acnes HL082PA2] gi|314983153|gb|EFT27245.1| tyrosine recombinase XerD [Propionibacterium acnes HL110PA3] gi|315092375|gb|EFT64351.1| tyrosine recombinase XerD [Propionibacterium acnes HL110PA4] gi|315103783|gb|EFT75759.1| tyrosine recombinase XerD [Propionibacterium acnes HL050PA2] gi|327327186|gb|EGE68962.1| tyrosine recombinase XerD [Propionibacterium acnes HL103PA1] Length = 306 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 44/279 (15%), Positives = 90/279 (32%), Gaps = 30/279 (10%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHI---RSGVESRK 127 + +Y + L+ N+ ++ + G ++T + R ++ Sbjct: 9 VEDYLRHLVVERGLSDNTVQAYRRDLLRYQEYLGSRGIGSLAEVTRVDVEEFRRHLDHIG 68 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 P+S + + ++R L ++AV V + + R + T + ++ + Sbjct: 69 LAPASVTRCVVAVRNLHRFAVGSGQVQADVTAGMSPGTRSRRLPKALTMDQVESLLAAPD 128 Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-----TQKTGTIITVELP 238 EG + E L +G R S+ C V ++ + K V L Sbjct: 129 TSTVEGLRDAALLELLYGTGARVSEVCALDVDDIRRVLDDPDLGLRLIGKGDKERIVPLG 188 Query: 239 DGFMKLLAMTPIGKETFFI-----------NNDKQKMNATQFSIWFKAKATKAGVN---K 284 K + I + N ++++ + AG++ Sbjct: 189 SYAAKAVDAWLIRGRPAWAEIGNGEHALLLNTRGRRLSRQSAWAVIRRAGEAAGLDVEHL 248 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 S H +R AT D GA + G +V + YT Sbjct: 249 SPHSLRHSYATHLLDGGADVRVVQELLGHSSVTTTQIYT 287 >gi|269792953|ref|YP_003317857.1| integrase family protein [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100588|gb|ACZ19575.1| integrase family protein [Thermanaerovibrio acidaminovorans DSM 6589] Length = 292 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 46/276 (16%), Positives = 91/276 (32%), Gaps = 16/276 (5%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSGVESR---KH 128 I + + + ++ I++ Q + IT H+R + S Sbjct: 2 IDSFLEYLKSLGRSEHTVINYGVDLGQFAEYLEQAEVHRVQDITRDHVRGFLRSLVGYGF 61 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +SA++ ++S+R + + +P V+ P+ R + D+ + Sbjct: 62 AKASALRKMSSIRGFMGYLRDIGVIERDPSEGVKGPRSSPGLPRAISYPDVCRLLEEGPS 121 Query: 189 GS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKL 244 G + RL E L SGLR S+ C + I+ V + Sbjct: 122 GREAFRDRLVMELLYGSGLRVSELCDLDWDDVDVEERWIRVMGKGSKGRMVPFGSIVQDM 181 Query: 245 LAMTPIGKET----FFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISAD 299 L F +++ A + G+ S H +R AT + Sbjct: 182 LRRWGEMVGRAGPLFPGKRGAERLTQRTVHRIVSGCARRVGLFGVSPHTLRHSFATHLLE 241 Query: 300 AGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIK 334 GA+ + G +++ + Y A+R+R + Sbjct: 242 GGASLRVVQELMGHESLVTTQRYLDVTAERMRFSYQ 277 >gi|313837516|gb|EFS75230.1| tyrosine recombinase XerD [Propionibacterium acnes HL037PA2] gi|314927276|gb|EFS91107.1| tyrosine recombinase XerD [Propionibacterium acnes HL044PA1] gi|314972722|gb|EFT16819.1| tyrosine recombinase XerD [Propionibacterium acnes HL037PA3] gi|328907874|gb|EGG27637.1| site-specific tyrosine recombinase XerD [Propionibacterium sp. P08] Length = 306 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 42/284 (14%), Positives = 89/284 (31%), Gaps = 30/284 (10%) Query: 70 TLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHI---RSG 122 T+ +Y + L+ N+ ++ + + G ++T + R Sbjct: 4 TVGGQAEDYLRHLVVERGLSDNTVQAYRRDLLRYQKYLDSRGIRSLAEVTRVDVEEFRRY 63 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 ++ P+S + + ++R L +AV + + R + T E ++ Sbjct: 64 LDQLGLAPASVTRCVVAVRNLHHFAVESGQAKTDVTAGISPGTRSRRLPKALTMEQVEAL 123 Query: 183 KSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-----TQKTGTII 233 + EG + E L +G R S+ C V ++ + K Sbjct: 124 LAAPDTSTVEGLRDTALLELLYGTGARVSEVCALDVDDIRPVLDDPDLGLRLIGKGDKER 183 Query: 234 TVELPDGFMKLLAMTPIGKETFFIN-----------NDKQKMNATQFSIWFKAKATKAGV 282 V L + + + + ++++ + AG+ Sbjct: 184 IVPLGSYAAQAVDAWLVRGRPAWAQLGNGEHALLLNTRGRRLSRQSAWTVIRRAGEAAGL 243 Query: 283 N---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + S H +R AT D GA + G +V + YT Sbjct: 244 DVEHLSPHSLRHSYATHLLDGGADIRVVQELLGHSSVTTTQIYT 287 >gi|34580584|ref|ZP_00142064.1| integrase/recombinase [Rickettsia sibirica 246] gi|229586627|ref|YP_002845128.1| site-specific tyrosine recombinase XerD [Rickettsia africae ESF-5] gi|28261969|gb|EAA25473.1| integrase/recombinase [Rickettsia sibirica 246] gi|228021677|gb|ACP53385.1| Tyrosine recombinase XerD [Rickettsia africae ESF-5] Length = 306 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 49/286 (17%), Positives = 100/286 (34%), Gaps = 35/286 (12%) Query: 74 LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRK--ITTKHIRSGVESRKH-- 128 I+++ + +L+ NS +S++ + ITT++IR +E Sbjct: 3 FIAQFLEMLLAERALSKNSILSYKRDLFDFQNYLAKHKLSELNITTENIRDWIEYLASND 62 Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 S + +++++ +++ + + + A NP L+V+ PK + + + ++ Sbjct: 63 LQARSINRKISTIKSYYEFLISENHTAFNPVLNVDLPKYQNKLPEILSIAQIKSLLEHCS 122 Query: 187 ----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--------QNNIFSIKTQKTGTIIT 234 EG + L SGLR S+ + + + K Sbjct: 123 QDNSPEGIRLNAMIHLLYASGLRVSELVSLKLADILTNKTSKGEVRKIFSVLGKGNKERV 182 Query: 235 VELPDG----FMKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWFKAKATKAG 281 + + + K LA+ + N M F+I K+ A AG Sbjct: 183 IVINEQAVISIAKYLAIRGVFVNKAKPRNLIYLFPSSALAGYMTRQNFAILLKSAALYAG 242 Query: 282 VN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +N S H +R A+ + GA + G + + YT Sbjct: 243 LNPEYISPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTH 288 >gi|312951578|ref|ZP_07770474.1| tyrosine recombinase XerC [Enterococcus faecalis TX0102] gi|310630544|gb|EFQ13827.1| tyrosine recombinase XerC [Enterococcus faecalis TX0102] Length = 299 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 37/280 (13%), Positives = 86/280 (30%), Gaps = 27/280 (9%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR- 126 L + Y + ++ +++ G+ +Y + +R+ + Sbjct: 6 WPELFARYL--IVERGYSEKTKKAYQEDIQHFFSFLKTSGNDNYLTVEHLEVRAYLSELY 63 Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 +++ +S + + S+R +++ ++ E + NP V K++ R + +++M Sbjct: 64 DQEYSRNSISRKIASLRSFYQFLLKNEAIQENPFSYVHMKKKQLRLPRFFYEKEMDALFE 123 Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD 239 + + E L +G+R S+ V + + K V Sbjct: 124 SAQGEQPLDLRNQALLEVLYGTGIRVSECANLTVDAVDFQASVLLVHGKGNKDRYVPFGS 183 Query: 240 GFMKLLAMT------------PIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKS 285 L F+N+ +++ T K V Sbjct: 184 FAQDALKDYLENGRALLMTKYQKKHPYVFVNHHGEQITPTGIEYVLNQLIKKSSLNVEIH 243 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 H +R AT + GA + G + + Y Sbjct: 244 PHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHV 283 >gi|319425289|gb|ADV53363.1| tyrosine recombinase XerD [Shewanella putrefaciens 200] Length = 300 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 47/284 (16%), Positives = 93/284 (32%), Gaps = 30/284 (10%) Query: 74 LISEYRKSA-HWGSLAVNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGVE---SR 126 LI + L+ N+ ++ + R G T +RS + + Sbjct: 10 LIDAFLDDLWSSKGLSDNTLSAYRTDLRHFDRHQQRHGTTLLEA-TAADVRSYLALRLEQ 68 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 +S+ + L+S+R + + + + +A++P +E PK ++ + + + Sbjct: 69 HFARTSSARLLSSLRRFYTYLLLTKQIAVDPMALIESPKLTRHLPHSLSESQVDRLLAEP 128 Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------- 229 + + + E L +GLR S+ ++ + ++ Sbjct: 129 NVDDPVECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVRIVGKGGKERLVPLGELA 188 Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAH 287 T + L +LL F K A +AG+ S H Sbjct: 189 VTEVEAYLKFARQELLGHKQSDVVFPSNRGQMM--TRQTFWHRIKLYALRAGIETALSPH 246 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +R AT + GA + G + + YT A R RL Sbjct: 247 TLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVA-RARL 289 >gi|119478678|ref|ZP_01618568.1| tyrosine recombinase [marine gamma proteobacterium HTCC2143] gi|119448404|gb|EAW29656.1| tyrosine recombinase [marine gamma proteobacterium HTCC2143] Length = 300 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 49/279 (17%), Positives = 96/279 (34%), Gaps = 23/279 (8%) Query: 74 LISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRK 127 LI + ++ N+ S+ Q + D RK + + RK Sbjct: 10 LIDAFLDGIWMERGVSENTLSSYRQDLMQFNQWLLDQQTTMLAVRKNDIEAYLAFRLMRK 69 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + S + L+ +R +++ +R+ ++++P L ++ PK + +++D++ + Sbjct: 70 ISARSTARLLSCLRGFYQYQLRESRISLDPTLDIDSPKMGRPLPKSLSEQDVEALLNAPD 129 Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 + + E L SGLR ++ V L N ++ V + + Sbjct: 130 TDEPLELRDKAMLELLYASGLRVTELITLQVGQLSVNQGVVRVMGKGSKERLVPTGEEAL 189 Query: 243 KLLAMTP----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVR 290 L +T F + M F K A +AG+ S H +R Sbjct: 190 DWLQRYMKDGRPALLGARMSDTMFPSRRGAVMTRQTFWYRIKIYAQRAGIRQSLSPHTLR 249 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + GA + G + + YT A Sbjct: 250 HAFATHLINHGADLRVVQLLLGHSDLSTTQIYTHVAKER 288 >gi|224541324|ref|ZP_03681863.1| hypothetical protein CATMIT_00484 [Catenibacterium mitsuokai DSM 15897] gi|224525761|gb|EEF94866.1| hypothetical protein CATMIT_00484 [Catenibacterium mitsuokai DSM 15897] Length = 310 Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats. Identities = 46/278 (16%), Positives = 90/278 (32%), Gaps = 27/278 (9%) Query: 77 EYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGV---ESRKHTP 130 + + + +V + S+E + G +++ I++ + + + Sbjct: 6 AFLHYLKYQKNYSVLTLQSYERELTDFLLFIGKESISLQEVDYYVIQNYLIYLNEKHLSH 65 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FW 186 ++ +L+S+R FK+ +Q V NP V K + ++M + Sbjct: 66 TTINHYLSSLRSFFKYLCQQNSVVSNPFSQVHSLKTGSRNPDFLYVDEMMGYLDSIDTHT 125 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL 245 S G + + E + SGLR S+ + + N I+ K V D K L Sbjct: 126 SLGVRNKALLELMYASGLRVSEVVSLRLSQIDFNRQMIRVLGKGSKEREVPFHDYAKKWL 185 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---------------NKSAHGVR 290 +N + + + K + GV H +R Sbjct: 186 LQYINDDRISIMNEYHEAHDYVFVNRRGKKLTNR-GVENIIDRTMYLYDPLRKIHPHTIR 244 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 AT DAG + G ++ + YT + Sbjct: 245 HSFATHLLDAGMDIRVVQELLGHSSLSTTQIYTHVSQE 282 >gi|160884146|ref|ZP_02065149.1| hypothetical protein BACOVA_02123 [Bacteroides ovatus ATCC 8483] gi|156110488|gb|EDO12233.1| hypothetical protein BACOVA_02123 [Bacteroides ovatus ATCC 8483] Length = 319 Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats. Identities = 55/297 (18%), Positives = 105/297 (35%), Gaps = 25/297 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGVESRK 127 +I +Y++ SL+ N+ ++ + ++I G D +H +G+ Sbjct: 16 IIRKYQQYLKLEKSLSPNTLDAYLTDLYKLINFLEQEKVGILDVCLSDLQHFAAGLHDIG 75 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 P S + L+ ++ F++ + ++Y+ +P +E PK + T E++ + S Sbjct: 76 IHPRSQARILSGIKSFFRFLIIEDYLEADPSELLEGPKIGFKLPEVLTVEEIDRIISAVD 135 Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFM 242 EG + R E L GLR S+ + L + F K V + + Sbjct: 136 RSKAEGQRNRAILETLYSCGLRVSELVTLKLSDLYFDEGFIKVEGKGSKQRLVPISPRAI 195 Query: 243 KLLAMTPIGKETFFINNDKQKM-----------NATQFSIWFKAKATKAGVNK--SAHGV 289 + + + + + + K A KAG+ K S H Sbjct: 196 NEIKLYIPDRNQIEVKKGHEDFVFVSQRRGKGLSRIMIFHMIKELAEKAGITKNISPHTF 255 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346 R AT + GA + G +++ E YT DR L + + Sbjct: 256 RHSFATHLLEGGANLRAIQCMLGHESIATTEIYTH-IDRNMLRSEIIEHHPRNIKYR 311 >gi|217961405|ref|YP_002339973.1| prophage LambdaBa02, site-specific recombinase, phage integrase family [Bacillus cereus AH187] gi|229140651|ref|ZP_04269202.1| Prophage LambdaBa02, site-specific recombinase, phage integrase [Bacillus cereus BDRD-ST26] gi|217065831|gb|ACJ80081.1| prophage LambdaBa02, site-specific recombinase, phage integrase family [Bacillus cereus AH187] gi|228642824|gb|EEK99104.1| Prophage LambdaBa02, site-specific recombinase, phage integrase [Bacillus cereus BDRD-ST26] Length = 376 Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats. Identities = 52/348 (14%), Positives = 109/348 (31%), Gaps = 34/348 (9%) Query: 27 KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS 86 G ++I + +T +Y NS + L+ + + S Sbjct: 23 TGKRKQITKGGFKTKKAAQEEAARVTNDLANGDYENSDIR----FSQLVEIWMQEKE-TS 77 Query: 87 LAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS---MRV 142 ++ ++ +++ + D I + + + + + ++ Sbjct: 78 CRPSTLYQYKRILRSRVMPEFADKRLSDIKPLTVHNFHQKLLKEGLTTKYISSVDVMLKQ 137 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202 + V E + NP +RPK K + WT + +F + +AF L++ Sbjct: 138 ILDKGVELEMINSNPAKKAKRPKVKKKAQASWTIDQAMKFMEYAKIKGSYYIAFVLALHT 197 Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKT-----------------GTIITVELPDGFMKLL 245 G+R + + + +I Q+T + + +LL Sbjct: 198 GMRIGEVLALQWDDINFDNKAIHVQRTLTLVDGKYELGETKTEASNRVIPMTEELMEELL 257 Query: 246 AMTPIGKETFFINNDKQKM----NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300 KE F + + KA V H +R+ TI D+ Sbjct: 258 DYQNHKKENSFDLLICTRNKKIVHPYTIRYQMKALCEAIDVPYIRFHDIRRTFTTILIDS 317 Query: 301 GATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVDSDD 347 GA A + G V YT + + I+ + ++ +V+ S Sbjct: 318 GANAKVVAKLLGHTNVSTTLNIYTDTYEERQ--IEATEKLGNVLKSGR 363 >gi|260062440|ref|YP_003195520.1| putative tyrosine recombinase [Robiginitalea biformata HTCC2501] gi|88784003|gb|EAR15174.1| putative tyrosine recombinase [Robiginitalea biformata HTCC2501] Length = 300 Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats. Identities = 48/287 (16%), Positives = 89/287 (31%), Gaps = 26/287 (9%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVES 125 + I++Y L+ NS S+ ++ + + I K I + + Sbjct: 3 WEEAITDYLHYLRLERGLSENSVRSYRRDVRKLAGYLAENEPGITPKSIDRKDIEAFIHH 62 Query: 126 RKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-- 181 S + ++ ++ F + + + Y NP +E PK + + E++ + Sbjct: 63 VGTDLKARSQARLISGLKGFFGYLIFEGYRKDNPMDLIEAPKLGRKLPDTLSVEEIDRLV 122 Query: 182 --FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELP 238 EG + E L GLR S+ + L + F T K V + Sbjct: 123 AEIDRSAPEGERNLAILETLYGCGLRVSELLGLRLSDLFFDEGFIKVTGKGSKDRFVPIG 182 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKM-----------NATQFSIWFKAKATKAGVNK--S 285 + + + + + A +AG+ K S Sbjct: 183 PYNRECILRYIREVRPHQQPQAGFEDVVFLNRRGRGLSRAMIFTIIRDLAARAGLRKNVS 242 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H R AT GA + G +++ E Y DR L Sbjct: 243 PHTFRHSFATHLLQNGADIRAIQQMLGHESITTTEVYMH-VDRTHLA 288 >gi|296115374|ref|ZP_06834012.1| phage integrase family protein [Gluconacetobacter hansenii ATCC 23769] gi|295978112|gb|EFG84852.1| phage integrase family protein [Gluconacetobacter hansenii ATCC 23769] Length = 383 Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats. Identities = 45/328 (13%), Positives = 100/328 (30%), Gaps = 17/328 (5%) Query: 14 ERTRHGKIIYYFRKGHGRRIRL------PYPHESTFIPAYM---SALTGSTPKREYINSP 64 G+ +Y G R+R P + A S Sbjct: 32 RVWPSGRKVYVIHYRSGGRMRRYTIGQHGSPWTADLAREEAIKVLARVHSGENPADARLE 91 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSGV 123 +K T++ + + L ++ ++ D I K G + I+ + Sbjct: 92 DRKAMTVREFSNRFLDEYVDVHLKPTTQSEYKRAVDLFIVPKFGTWRMADISRADVSGFH 151 Query: 124 ESRKHTPSSAIQFLTSMRVLFK----WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + P A + L + +F W +R + + + + +++ + + Sbjct: 152 GDLRQIPYQANRTLGVLSKMFSLADLWGIRTDGLNPCRGVQRYKEEKRERYLTQEEYARL 211 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVEL 237 + + + A L+ +G R + H+ + ++ KTG I Sbjct: 212 GATLNEAEDMPEAVWAIRLLILTGCRLREIQTLQWSHVFFDQSELRLPDSKTGAKIVQIG 271 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATI 296 + A+T + + I K+ T ++ AG++ H +R A+ Sbjct: 272 QAAINVIKAITRLEDNPYVITGRKKGGYLTDLQKPWRRIRKAAGLDDVRIHDLRHSFASD 331 Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324 + + GA + G + Y Sbjct: 332 ALEMGADLTMIGHMLGHSDIKTTARYAH 359 >gi|256847174|ref|ZP_05552620.1| tyrosine recombinase XerC [Lactobacillus coleohominis 101-4-CHN] gi|256715838|gb|EEU30813.1| tyrosine recombinase XerC [Lactobacillus coleohominis 101-4-CHN] Length = 312 Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats. Identities = 35/282 (12%), Positives = 79/282 (28%), Gaps = 29/282 (10%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-------KSGDFDYRKITTKHIRSGV 123 L + + Y LA + +E+ + G ++ + + + Sbjct: 9 LANVFAIYLT--GERQLAATTVQGYENDLRMFRKFLTAKKHWLGWLKIKRQDIQAYLTHL 66 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + ++ + L S+R + + + V NP V R + + +M Sbjct: 67 NDLRRQWTTINRELASLRTFYNFLLTNGLVVANPFDEVRMKHHSRSLPRYFYEPEMNALF 126 Query: 184 SF-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVEL 237 + R E L +G+R S+ ++ + ++ I K V Sbjct: 127 KAADGDGRPLDFRNRAIIELLYATGMRVSECASLSLEQINWDVQMILVHGKGDKERYVPF 186 Query: 238 PDGFMKLLAMTPIGKETFFINNDK------------QKMNATQFSIWFKAKATK--AGVN 283 L ++ + + + K ++ Sbjct: 187 GHYAKVALERYLHECREPLMDKYHEEHRRVFINHYGKPITSEGIEYVLNQVVKKSSLNIH 246 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 H +R AT + GA + G ++ + YT Sbjct: 247 IHPHMLRHSFATAMLNNGADIRSVQELLGHSSLSTTQIYTHV 288 >gi|311745586|ref|ZP_07719371.1| tyrosine recombinase XerD [Algoriphagus sp. PR1] gi|126578148|gb|EAZ82368.1| tyrosine recombinase XerD [Algoriphagus sp. PR1] Length = 301 Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats. Identities = 47/283 (16%), Positives = 99/283 (34%), Gaps = 26/283 (9%) Query: 68 PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSG 122 T + I ++R SL+ NS ++ +++ D + + +H+R Sbjct: 2 TKTWENHIKQFRHYLKLERSLSENSIEAYTRDVEKLAAYSSKNFPDKNPLNLELEHLRKF 61 Query: 123 VESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 V + + + ++ ++ +++ + ++ + +P +E PK + + +++ Sbjct: 62 VNELAQLEISDYTQARIISGIKAFYRFLMYEDKITEDPAQLLEAPKLGRKLPDTLSYQEI 121 Query: 180 QQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIIT 234 Q EG + R E L SGLR S+ + +I ++ Sbjct: 122 VQLLEAIPLGEPEGHRNRAMLEMLYSSGLRVSELIELKKGQIFEDIGFLRVIGKGNKERL 181 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQ-----------KMNATQFSIWFKAKATKAGVN 283 V + +K L + K++ + K A AG+ Sbjct: 182 VPIGKDALKYLNIYKDEVRVHQSIAKGHEEFVFLNRRGKKLSRVMIFLIIKKTAELAGIE 241 Query: 284 K--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 K S H R AT + GA + G +++ E YT Sbjct: 242 KNISPHTFRHSFATHLIEGGADLRAVQEMLGHESITTTEIYTH 284 >gi|50842870|ref|YP_056097.1| site-specific tyrosine recombinase XerD [Propionibacterium acnes KPA171202] gi|289425573|ref|ZP_06427350.1| tyrosine recombinase XerD [Propionibacterium acnes SK187] gi|289428211|ref|ZP_06429907.1| tyrosine recombinase XerD [Propionibacterium acnes J165] gi|295130925|ref|YP_003581588.1| tyrosine recombinase XerD [Propionibacterium acnes SK137] gi|50840472|gb|AAT83139.1| site-specific recombinase [Propionibacterium acnes KPA171202] gi|289154551|gb|EFD03239.1| tyrosine recombinase XerD [Propionibacterium acnes SK187] gi|289158592|gb|EFD06799.1| tyrosine recombinase XerD [Propionibacterium acnes J165] gi|291376433|gb|ADE00288.1| tyrosine recombinase XerD [Propionibacterium acnes SK137] gi|313764051|gb|EFS35415.1| tyrosine recombinase XerD [Propionibacterium acnes HL013PA1] gi|313792446|gb|EFS40539.1| tyrosine recombinase XerD [Propionibacterium acnes HL110PA1] gi|313801509|gb|EFS42758.1| tyrosine recombinase XerD [Propionibacterium acnes HL110PA2] gi|313807151|gb|EFS45646.1| tyrosine recombinase XerD [Propionibacterium acnes HL087PA2] gi|313809643|gb|EFS47379.1| tyrosine recombinase XerD [Propionibacterium acnes HL083PA1] gi|313813282|gb|EFS50996.1| tyrosine recombinase XerD [Propionibacterium acnes HL025PA1] gi|313816401|gb|EFS54115.1| tyrosine recombinase XerD [Propionibacterium acnes HL059PA1] gi|313819347|gb|EFS57061.1| tyrosine recombinase XerD [Propionibacterium acnes HL046PA2] gi|313819996|gb|EFS57710.1| tyrosine recombinase XerD [Propionibacterium acnes HL036PA1] gi|313823212|gb|EFS60926.1| tyrosine recombinase XerD [Propionibacterium acnes HL036PA2] gi|313825000|gb|EFS62714.1| tyrosine recombinase XerD [Propionibacterium acnes HL063PA1] gi|313827302|gb|EFS65016.1| tyrosine recombinase XerD [Propionibacterium acnes HL063PA2] gi|313829963|gb|EFS67677.1| tyrosine recombinase XerD [Propionibacterium acnes HL007PA1] gi|313833033|gb|EFS70747.1| tyrosine recombinase XerD [Propionibacterium acnes HL056PA1] gi|313838270|gb|EFS75984.1| tyrosine recombinase XerD [Propionibacterium acnes HL086PA1] gi|314914912|gb|EFS78743.1| tyrosine recombinase XerD [Propionibacterium acnes HL005PA4] gi|314917863|gb|EFS81694.1| tyrosine recombinase XerD [Propionibacterium acnes HL050PA1] gi|314919752|gb|EFS83583.1| tyrosine recombinase XerD [Propionibacterium acnes HL050PA3] gi|314924835|gb|EFS88666.1| tyrosine recombinase XerD [Propionibacterium acnes HL036PA3] gi|314930006|gb|EFS93837.1| tyrosine recombinase XerD [Propionibacterium acnes HL067PA1] gi|314956418|gb|EFT00730.1| tyrosine recombinase XerD [Propionibacterium acnes HL027PA1] gi|314957287|gb|EFT01390.1| tyrosine recombinase XerD [Propionibacterium acnes HL002PA1] gi|314960608|gb|EFT04710.1| tyrosine recombinase XerD [Propionibacterium acnes HL002PA2] gi|314963140|gb|EFT07240.1| tyrosine recombinase XerD [Propionibacterium acnes HL082PA1] gi|314967736|gb|EFT11835.1| tyrosine recombinase XerD [Propionibacterium acnes HL037PA1] gi|314972871|gb|EFT16968.1| tyrosine recombinase XerD [Propionibacterium acnes HL053PA1] gi|314975706|gb|EFT19801.1| tyrosine recombinase XerD [Propionibacterium acnes HL045PA1] gi|314978092|gb|EFT22186.1| tyrosine recombinase XerD [Propionibacterium acnes HL072PA2] gi|314984110|gb|EFT28202.1| tyrosine recombinase XerD [Propionibacterium acnes HL005PA1] gi|314986253|gb|EFT30345.1| tyrosine recombinase XerD [Propionibacterium acnes HL005PA2] gi|314989533|gb|EFT33624.1| tyrosine recombinase XerD [Propionibacterium acnes HL005PA3] gi|315078203|gb|EFT50246.1| tyrosine recombinase XerD [Propionibacterium acnes HL053PA2] gi|315080906|gb|EFT52882.1| tyrosine recombinase XerD [Propionibacterium acnes HL078PA1] gi|315086002|gb|EFT57978.1| tyrosine recombinase XerD [Propionibacterium acnes HL002PA3] gi|315088279|gb|EFT60255.1| tyrosine recombinase XerD [Propionibacterium acnes HL072PA1] gi|315095700|gb|EFT67676.1| tyrosine recombinase XerD [Propionibacterium acnes HL038PA1] gi|315098208|gb|EFT70184.1| tyrosine recombinase XerD [Propionibacterium acnes HL059PA2] gi|315101638|gb|EFT73614.1| tyrosine recombinase XerD [Propionibacterium acnes HL046PA1] gi|315105953|gb|EFT77929.1| tyrosine recombinase XerD [Propionibacterium acnes HL030PA1] gi|315109457|gb|EFT81433.1| tyrosine recombinase XerD [Propionibacterium acnes HL030PA2] gi|327327897|gb|EGE69671.1| tyrosine recombinase XerD [Propionibacterium acnes HL096PA3] gi|327330004|gb|EGE71758.1| tyrosine recombinase XerD [Propionibacterium acnes HL097PA1] gi|327330036|gb|EGE71789.1| tyrosine recombinase XerD [Propionibacterium acnes HL096PA2] gi|327442733|gb|EGE89387.1| tyrosine recombinase XerD [Propionibacterium acnes HL043PA1] gi|327443869|gb|EGE90523.1| tyrosine recombinase XerD [Propionibacterium acnes HL043PA2] gi|327443937|gb|EGE90591.1| tyrosine recombinase XerD [Propionibacterium acnes HL013PA2] gi|327452342|gb|EGE98996.1| tyrosine recombinase XerD [Propionibacterium acnes HL087PA3] gi|327452783|gb|EGE99437.1| tyrosine recombinase XerD [Propionibacterium acnes HL083PA2] gi|327453535|gb|EGF00190.1| tyrosine recombinase XerD [Propionibacterium acnes HL092PA1] gi|328752650|gb|EGF66266.1| tyrosine recombinase XerD [Propionibacterium acnes HL025PA2] gi|328753798|gb|EGF67414.1| tyrosine recombinase XerD [Propionibacterium acnes HL087PA1] gi|328755026|gb|EGF68642.1| tyrosine recombinase XerD [Propionibacterium acnes HL020PA1] gi|328761444|gb|EGF74970.1| tyrosine recombinase XerD [Propionibacterium acnes HL099PA1] Length = 306 Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats. Identities = 42/279 (15%), Positives = 89/279 (31%), Gaps = 30/279 (10%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHI---RSGVESRK 127 +Y + L+ N+ ++ + G ++T + R ++ Sbjct: 9 AEDYLRHLVVERGLSDNTVQAYRRDLLRYQEYLGSRGIGSLAEVTRVDVEEFRRHLDHIG 68 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 P+S + + ++R L ++AV + + + R + + + ++ + Sbjct: 69 LAPASVTRCVVAVRNLHRFAVGSGQLQADVTAGMSPGTRSRRLPKALSMDQVESLLAAPD 128 Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-----TQKTGTIITVELP 238 EG + E L +G R S+ C V ++ + K V L Sbjct: 129 TSTVEGLRDAALLELLYGTGARVSEVCALDVDDIRPVLDDPDLGLRLIGKGDKERIVPLG 188 Query: 239 DGFMKLLAMTPIGKETFFI-----------NNDKQKMNATQFSIWFKAKATKAGVN---K 284 K + I + N ++++ + AG++ Sbjct: 189 SYAAKAVDAWLIRGRPAWAEIGNGEHALLLNTRGRRLSRQSAWAVIRRAGEAAGLDVEHL 248 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 S H +R AT D GA + G +V + YT Sbjct: 249 SPHSLRHSYATHLLDGGADVRVVQELLGHSSVTTTQIYT 287 >gi|330752024|emb|CBL80536.1| tyrosine recombinase [uncultured Flavobacteria bacterium] Length = 323 Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats. Identities = 53/287 (18%), Positives = 98/287 (34%), Gaps = 28/287 (9%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS-------G 122 I Y+ L+ NS ++ +++++ D + I+ +I Sbjct: 28 WPQAIIHYQNYLKIERGLSENSIANYTFDINKLVKWMVINDIK-ISPINIEKETLQEFIY 86 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 +++ P S + ++ ++ F + V +EY NP +E PK + + E++ Sbjct: 87 TIAKELNPRSQSRIISGLKGFFNYLVFEEYRTTNPLDLIESPKIGRKLPDILSIEEIDAI 146 Query: 183 KSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVEL 237 S G + R E L GLR S+ + L + F T K V + Sbjct: 147 ISTIDLTKPQGERNRGIIEVLYGCGLRVSELINLKISDLFFDEGFIKVTGKGNKQRFVPI 206 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMN-----------ATQFSIWFKAKATKAGVNK-- 284 +K + + + + K KAG++K Sbjct: 207 GSLTIKFIDIYRNEIRVHQVIKPNAQDTLFLNRRGNGLTRAMIFHIVKELTEKAGIHKKI 266 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 S H R AT + GA + G +++ E YT D+ L Sbjct: 267 SPHTFRHSFATHLLENGADLRAIQQMLGHESITTTEIYTH-IDKSHL 312 >gi|253576347|ref|ZP_04853677.1| tyrosine recombinase XerD [Paenibacillus sp. oral taxon 786 str. D14] gi|251844240|gb|EES72258.1| tyrosine recombinase XerD [Paenibacillus sp. oral taxon 786 str. D14] Length = 323 Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats. Identities = 39/262 (14%), Positives = 93/262 (35%), Gaps = 24/262 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIR---SGVESRKHTPSSAIQFLT 138 L+ +R S+ Q I DYR++T I + ++ P++ + Sbjct: 16 RGLSEATRESYARDLKQYISYLQSKQISDYRQVTRAGILLYFAYLKDLGKAPATIQRVSV 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194 ++R F++ +++ + +P + +E PK + + + T E+ ++ + + + Sbjct: 76 TLRAFFRYLLQERRIEQDPFIMLEMPKVEKKPPQTLTVEETERLLEAPKPDTPLGLRDKA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KTGTIITVELPDGFMKLLAMTPIGKE 253 E L +G+R S+ + + ++ + G + + L + Sbjct: 136 MLELLYATGIRVSELISLNKDDVNLELHFLRCTGERGKERILPFGGVTAEWLDLYLREGR 195 Query: 254 TF-----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300 + F N +++ F K +AG+ + + H +R A + Sbjct: 196 SHLILDERENPALFPNRRGGRISRQGFWKLMKKYGQEAGITSDITPHTLRHSFAVHLLER 255 Query: 301 GATAHELMATYGWKTVDQAETY 322 GA + G + Y Sbjct: 256 GADVRSVQELLGHSDASTIQMY 277 >gi|296140077|ref|YP_003647320.1| tyrosine recombinase XerD [Tsukamurella paurometabola DSM 20162] gi|296028211|gb|ADG78981.1| tyrosine recombinase XerD [Tsukamurella paurometabola DSM 20162] Length = 324 Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats. Identities = 46/288 (15%), Positives = 86/288 (29%), Gaps = 35/288 (12%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126 L + Y A N+ S+ D+ G D +T+ + + + Sbjct: 17 LDEALRAYLDHLTVERGAAANTLSSYRRDLDRYREYLVELGIDDLASVTSTQVSGFLVAL 76 Query: 127 KHT--------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + SSA + L ++R L ++A + A + V P + + + Sbjct: 77 REGSDGRPPLAASSAARSLIAVRGLHRFAAAEGLTASDVAREVRPPAPAKRLPKALSIDT 136 Query: 179 MQQFKSF--------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKT 229 + + R E L G R S+ V + S+ K Sbjct: 137 VIALLEAAGGDGESDTPSRLRDRALLELLYSCGARISEVTALDVDDIDVQSRSVVLMGKG 196 Query: 230 GTIITVELPDGFMKLLAMT---------PIGKETFFINNDKQKMNATQFSIWFKAKATKA 280 G V + + + F+N +++ A +A Sbjct: 197 GKQRVVPIGRPALAAIEAYLVRGRPSLVKKSNPALFLNVRGGRLSRQSAWQVLATAAERA 256 Query: 281 GVN-----KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 G++ S H +R AT + GA + G +V + YT Sbjct: 257 GIDTDAVHVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYT 304 >gi|161610765|ref|YP_067311.2| site-specific tyrosine recombinase XerD [Rickettsia typhi str. Wilmington] Length = 306 Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats. Identities = 48/297 (16%), Positives = 102/297 (34%), Gaps = 36/297 (12%) Query: 73 WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRK--ITTKHIRSGVESRKH- 128 I ++ + +L+ NS +S++ + ITT++IR +E Sbjct: 2 EFIEQFLEMLLAERALSKNSILSYKRDLLDFHNYLTKQKISELNITTRNIRKWIEYLASN 61 Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-----QQ 181 S + +++++ + + + + + A NP L+V+ PK + + + + + Sbjct: 62 NLHARSINRKISTIKSYYTFLISENHTAFNPVLNVDLPKYQNKLPVILSIDQIKLILEYC 121 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--------FSIKTQKTGTII 233 K EG + L SGLR S+ + + N K Sbjct: 122 SKDHTPEGIRLNAMIHLLYASGLRVSELVSLKLADILTNNTSKGIVRKIFSVLGKGNKER 181 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQ-------------KMNATQFSIWFKAKATKA 280 + + D + + ++ F + M F+I K+ A Sbjct: 182 VIVINDQAVLSITKYLKIRDIFVNKAKSKNLIYLFPSSAVAGYMTRQNFAILLKSVALDI 241 Query: 281 GVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGI 333 G+N S H +R A+ + GA + G + + YT + ++ + Sbjct: 242 GLNPKNVSPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHLHTNHLKQAL 298 >gi|114776721|ref|ZP_01451764.1| tyrosine recombinase [Mariprofundus ferrooxydans PV-1] gi|114552807|gb|EAU55238.1| tyrosine recombinase [Mariprofundus ferrooxydans PV-1] Length = 298 Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats. Identities = 46/295 (15%), Positives = 97/295 (32%), Gaps = 26/295 (8%) Query: 71 LKWLISEYRKSAHWGSL-AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG---VESR 126 + +S Y + L + ++ ++ G+ ++IT ++ ++ Sbjct: 6 FRTAVSAYLQELAEVRLASPHTIAAYRRDLGAFGEHCGNIGLQQITRLQVQDWLVVGHAK 65 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-- 184 ++ + L+++ L AV+ N V PK+ R E Sbjct: 66 GLAAATLARRLSALTGLLDSAVQAGICPANVAAGVRPPKKSARLPRTLPPEQTAALMQPT 125 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMK 243 S + + +GLR S++ + + + ++ K V LP Sbjct: 126 HASADRRDLALLAVMYGAGLRVSEAVGLDLHDIDLHSCELRVLGKGSKQRIVPLPTTAAD 185 Query: 244 LLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGVRKFS 293 LL + F+N Q++ A K +A ++G ++ + H +R Sbjct: 186 LLGQWLDERLLGLVRDERAVFLNRFGQRLTARSVQRMLKTRALESGADISVTPHRLRHSF 245 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 AT G + G ++ E YT + +++ V D P Sbjct: 246 ATHLLAGGVDLRAIQELLGHASLATTERYTHL---------DIAKLTEVYDRSHP 291 >gi|87307014|ref|ZP_01089160.1| integrase/recombinase [Blastopirellula marina DSM 3645] gi|87290387|gb|EAQ82275.1| integrase/recombinase [Blastopirellula marina DSM 3645] Length = 300 Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats. Identities = 46/294 (15%), Positives = 102/294 (34%), Gaps = 28/294 (9%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRSG 122 + + + + + + S+ + ++ + + + + + Sbjct: 2 RAAADRFLRYLRVERNASDLTIKSYGEDLEALVDYLEELYAAPASTGEVSTLDLRGYVAA 61 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 V + ++ + L SMR F++A R+E + +P + P+RK + T +++ + Sbjct: 62 VSDAGYAETTVSRRLASMRSFFRFAQREELIDRSPAKPLRNPRRKRKLPHFLTGDEISKL 121 Query: 183 KSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVEL 237 S + + R FE +GLR S+ + I+ + G L Sbjct: 122 LSAPPANTSAGLRDRAIFETTYSAGLRVSELVGLNDSDIDAEQGLIRIRGKGKRERLGPL 181 Query: 238 PDGFMKLLAMTPIGK-----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284 +K L + + F N ++ + AG++ Sbjct: 182 GSYAIKALHDWLSQRTLSARAAAAKEKPVFTNKFGNRLTTRSVGRMLEKYIAIAGLDTRT 241 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337 S H +R AT DAGA + G K++ + YT + R++ + + Sbjct: 242 SPHTLRHSFATHLLDAGADIRSVQELLGHKSLVTTQIYTHVSTTRLKEAYEKAH 295 >gi|172057038|ref|YP_001813498.1| tyrosine recombinase XerD [Exiguobacterium sibiricum 255-15] gi|171989559|gb|ACB60481.1| tyrosine recombinase XerD [Exiguobacterium sibiricum 255-15] Length = 294 Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats. Identities = 44/269 (16%), Positives = 102/269 (37%), Gaps = 23/269 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR---KHTPSSAIQFLT 138 ++ N+ ++ + +Q + G ++T HI +ES + + ++ + + Sbjct: 16 RQMSANTAAAYRNDLNQYLTTLEQQGISSAEEVTRHHIVLHIESLLQAQKSRATVRRSTS 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194 S+R ++ V ++ V +P ++ PK + W++ D+ + + Sbjct: 76 SIRSFHQFLVERQIVRHDPSRHLDLPKPDKKLPVVWSQTDIVRLLDSVVGNDPLVRRDAA 135 Query: 195 AFEFLLYSGLRCSDSCR----------AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 E L +G+R S+ + + L + + T I + Sbjct: 136 MLELLYGTGMRVSELLQLTLSDLQLELGYLSCLGKGNKTRIIPISQTAIDSVSVYLELAR 195 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302 ++ + F+N+ +++ F K +A +AG+ K + H +R AT + GA Sbjct: 196 NSLGGRQTDYVFLNSRGDRLSRQGFWKMIKRRAKEAGIEKDITPHVLRHSFATHLLENGA 255 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRL 331 + G + + YT ++ RL Sbjct: 256 DLRVVQEMLGHADLSTTQMYTH-VNKARL 283 >gi|145295931|ref|YP_001138752.1| site-specific tyrosine recombinase XerC [Corynebacterium glutamicum R] gi|140845851|dbj|BAF54850.1| hypothetical protein [Corynebacterium glutamicum R] Length = 315 Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats. Identities = 45/310 (14%), Positives = 101/310 (32%), Gaps = 18/310 (5%) Query: 45 PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQII 103 + A S P+ L LI ++ + + + + S + Sbjct: 3 ESKKKAARSGRNAPPSGISGADAPSKLHTLIDDFCEHLDLVVGRSAATIRGYRSDLYAMA 62 Query: 104 RKSGDFDYRKI-TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162 D D + T + + ++ + S++ WA + ++ + + Sbjct: 63 DTIEDIDNFSLPTLRQWLGIAVDEGKSRATLARRTASVKAFSSWAQKNGHLKADEAARLI 122 Query: 163 RPKRKTEGIRPWTKEDMQQF-----KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217 PK + + ++ F + E + E L +G+R ++ C + + Sbjct: 123 SPKITRDLPKILGEQQAGDFVENAASTNEEEFLRDSAILELLYATGMRVAELCGIDLPDI 182 Query: 218 QNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKETFFINN-------DKQKMNATQF 269 + ++ K V + K L ++ + Q++NA Q Sbjct: 183 DYDRKMVRVLGKGNKERVVPFGESAHKALRNWLDVRDEMAEDPKALFVGVRGQRINARQV 242 Query: 270 SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 A GV+ S H +R +AT D GA ++ G ++ + YT +++ Sbjct: 243 RRIVDRVAKVTGVDHLSPHSLRHTAATHLLDGGADLRQVQELLGHSSMQTTQIYTHVSNK 302 Query: 329 IRLGIKNSRR 338 L + + Sbjct: 303 RLL--EAFNK 310 >gi|116492727|ref|YP_804462.1| tyrosine recombinase XerC subunit [Pediococcus pentosaceus ATCC 25745] gi|122265809|sp|Q03FK2|XERC_PEDPA RecName: Full=Tyrosine recombinase xerC gi|116102877|gb|ABJ68020.1| tyrosine recombinase XerC subunit [Pediococcus pentosaceus ATCC 25745] Length = 301 Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats. Identities = 41/299 (13%), Positives = 93/299 (31%), Gaps = 30/299 (10%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFD----YRKITTKHIRSGVESR 126 L +Y + + ++ D + GD + S + R Sbjct: 6 LFKQYLT--VERQYSEKTVTAYLEDIDAFQKFLTDTGDKTDLLLVDRFDVNVYMSYLFDR 63 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 +S + ++++R +++ V+ + V NP V+ K+ + + +++M Sbjct: 64 HLARTSISRKVSALRSFYRFLVKNDLVDKNPFELVQLKKQSDKLPHFFYEKEMNMLFEAV 123 Query: 187 SEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDG 240 + + E L +G+R S+ + ++ +I K V Sbjct: 124 YQAEGAQKLRNIAILEVLYGTGMRVSECAALQWSDIDFSMQTILVLGKGNKERYVPFGRY 183 Query: 241 FMKLLAMTPIGKE------------TFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 + L + FIN+ + + T T + + Sbjct: 184 AKEALQNYRKNEWEPFLSKYKQTHNFVFINHYAKPITTTGIEYILNQVITASSLNGKIHP 243 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345 H +R AT + GA + G ++ + YT + +L + D+ Sbjct: 244 HMLRHSFATALLNNGADLRTVQELLGHSSLSTTQIYTHVT-KEKLQESYRKYFPRSTDA 301 >gi|332169022|gb|AEE18277.1| tyrosine recombinase XerD [Krokinobacter diaphorus 4H-3-7-5] Length = 300 Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats. Identities = 47/272 (17%), Positives = 91/272 (33%), Gaps = 25/272 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYR----KITTKHIRSGVE--SRKHTPSSAIQFLT 138 L+ N+ ++ ++ R D IT I+ + +++ S + ++ Sbjct: 18 RGLSENTIDNYARDLKKLTRHLEQLDSAPDPITITKDDIQDFIYTIAKEVQARSQARIIS 77 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194 ++ F + + ++Y NP +E P+ + +E++ + +G + R Sbjct: 78 GLKGFFNYLIFEDYRKDNPLDLIESPRLGRKLPDTLAEEEIDALITAIDLSNPQGERNRA 137 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253 E L GLR ++ + L F K V + + K + + Sbjct: 138 MLETLYSCGLRVTELISLKLSDLYFEEGFINVIGKGDKQRFVPISEHTQKYINIYRNEIR 197 Query: 254 TFFINNDKQ-----------KMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADA 300 T + ++ K A KAG+ KS H R AT Sbjct: 198 THTDVKPEYVDILFLNRRGRQLTRAMIFTIIKDLAVKAGIKKSISPHTFRHSFATHLLQN 257 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLG 332 GA + G +++ E Y DR L Sbjct: 258 GADLRSIQQMLGHESITTTEIYMH-VDRSDLA 288 >gi|114766935|ref|ZP_01445855.1| Integrase [Pelagibaca bermudensis HTCC2601] gi|114540842|gb|EAU43904.1| Integrase [Roseovarius sp. HTCC2601] Length = 335 Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats. Identities = 67/346 (19%), Positives = 124/346 (35%), Gaps = 16/346 (4%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63 LP +V + R +Y+ R G +RI P F Y + G Sbjct: 2 KRNLPAYVYAKGKRG--YLYFIRSGVCQRIH-SEPGTPEFAADYAILMRG---------R 49 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 + LI + +S W + A N+R +E + + +G+ D K+ T H+ Sbjct: 50 VVAPKRNIGKLIELFMRSPKWANYAHNTRRGYERHLTYLRDTAGNIDPAKLRTVHVYEMR 109 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 ++ P+ A + + ++ L + ++ ++ NP VER K +PW + + F+ Sbjct: 110 DALADKPTDANRKIDTLVALLNYGIQIGWIDRNPAHGVERLKATGRKRKPWPVDLIDAFR 169 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 + L FE LL +G R +D + + F + KT + + L D Sbjct: 170 --AEADGRTLLIFEMLLGTGQRINDVLALRWSDMDGDGFQLTQGKTKAELYIPLTDRLRA 227 Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADA-G 301 +LA + D K++ K G + H +R +A+ A G Sbjct: 228 VLASQRRRGMFIICHEDGTKISYQLAHKDVMTVRKKIGADEYDIHALRYAAASEIAAIPG 287 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347 T + A G Y A + + + + ++ Sbjct: 288 MTRDHIQAITGHADAAMIRRYAGAAVQKIRATEAQKARADRTNTKR 333 >gi|58337257|ref|YP_193842.1| integrase-recombinase [Lactobacillus acidophilus NCFM] gi|227903842|ref|ZP_04021647.1| integrase-recombinase [Lactobacillus acidophilus ATCC 4796] gi|58254574|gb|AAV42811.1| integrase-recombinase [Lactobacillus acidophilus NCFM] gi|227868729|gb|EEJ76150.1| integrase-recombinase [Lactobacillus acidophilus ATCC 4796] Length = 301 Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats. Identities = 46/278 (16%), Positives = 100/278 (35%), Gaps = 25/278 (8%) Query: 71 LKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI-----TTKHIRSGVE 124 L+ I +Y + S L+VN+ ++ ++ + + + Sbjct: 6 LEDQIDDYLRYSQIERGLSVNTINAYRQDLEEYLTFVKKENMTSWPTEATDVDAFLARQH 65 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 SS + ++S+R ++W RQ +NP L ++ PK++ + T++++ Sbjct: 66 DLNKATSSISRLISSLRKFYQWLARQNIQKLNPMLEIDLPKKEHKLPIALTQDEVVNLLD 125 Query: 185 FWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239 + G + + E L +G+R S+ +Q L ++ ++ K + + Sbjct: 126 QPNTKQKLGLRDKAILETLYATGMRVSELINLKLQDLHEDLGLVRVLGKGAKERLIPISS 185 Query: 240 GFMKLLAMTPIG------------KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285 + L E F+NN +++ K AG+ + + Sbjct: 186 VALDWLKKYEKQVRDPLILNVGKDDEHIFLNNRGKQLTRQAIWQMIKKYCQLAGIAKDVT 245 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 H +R AT + GA + G + + YT Sbjct: 246 PHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYT 283 >gi|163785285|ref|ZP_02179942.1| phage integrase family protein [Hydrogenivirga sp. 128-5-R1-1] gi|159879446|gb|EDP73293.1| phage integrase family protein [Hydrogenivirga sp. 128-5-R1-1] Length = 324 Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats. Identities = 50/323 (15%), Positives = 102/323 (31%), Gaps = 17/323 (5%) Query: 23 YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSA 82 YY G++ L + + L K + I K L I EY + Sbjct: 11 YYVEFERGKKRSL-KTKDKALAQRLFNQLKREYLKGKIILLSEGKKIKLSEFIEEYLEWC 69 Query: 83 HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTS 139 + + + ++ +GD + +T KH+ V + + ++ + + Sbjct: 70 R-ENRSDETFKKARYVLQKLKDHTGDIYIKALTKKHLDEYVSTLLAQGISRTTINIHIRT 128 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199 ++ AV EYV +P ++ K R ED+ + + + + F+ Sbjct: 129 IKSALTKAVEWEYVQNHPLEGYKQLKVHQTPPRFLLPEDIAKVEKVIDDEFWLFVFRLFV 188 Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKETFFI 257 +G+R + + +H+ N IK KT + + L Sbjct: 189 Y-TGMRLGEIHKLRWKHIDLNRNVIKVEKTKTFQSRVIPIHPKLRAELEARTPAMGKVV- 246 Query: 258 NNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTV 316 K KAG + H +R A++ AG + G ++ Sbjct: 247 -----PYAKPTIEHKLKNCFKKAGFKDLRIHDLRHTFASLMVMAGVDLKTVQELLGHQSY 301 Query: 317 DQAETYTKGADRIRLGIKNSRRI 339 E Y + + + ++ Sbjct: 302 RTTEIYAHLSPQH--LHEAIKKF 322 >gi|225025733|ref|ZP_03714925.1| hypothetical protein EIKCOROL_02637 [Eikenella corrodens ATCC 23834] gi|224941514|gb|EEG22723.1| hypothetical protein EIKCOROL_02637 [Eikenella corrodens ATCC 23834] Length = 301 Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats. Identities = 49/294 (16%), Positives = 104/294 (35%), Gaps = 27/294 (9%) Query: 54 STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG--DFDY 111 + P P ++ TL L + LA N+ + +++ R+ D+ Sbjct: 5 AEPLPAAWQEPIEQ--TLDEL---FLT----RRLAANTLAGYRRDLEKVARRLHAQGLDW 55 Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 ++ + + V + P+S ++ L++++ L+ + Q + NP + P++ Sbjct: 56 QQADADALANAVYAPDEKPASQVRALSAVKQLYGFLQLQNRRSDNPAQHLRPPRQGRALP 115 Query: 172 RPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKT 226 + + + G + + E L +GLR S++ + +Q L Sbjct: 116 PLIGEAQIDALLAAPDTETIFGLRDKAVLETLYATGLRVSEAAQMQLQDLDLQRGVVTVI 175 Query: 227 QKTGTIITVELPDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAK 276 K V L + L + F+ + ++ K Sbjct: 176 GKGNKQRIVPLGAEAVYWLERYLKTARGELLKHTPCDFVFVGQKRSGISRQLVWQMVKRY 235 Query: 277 ATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 A +AG+ S HG+R AT + GA + G +++ + YT A+ Sbjct: 236 AAEAGISELSPHGLRHAFATHLVNHGADLRSVQMMLGHASLNTTQIYTHVANER 289 >gi|303239825|ref|ZP_07326348.1| integrase family protein [Acetivibrio cellulolyticus CD2] gi|302592535|gb|EFL62260.1| integrase family protein [Acetivibrio cellulolyticus CD2] Length = 351 Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats. Identities = 41/258 (15%), Positives = 89/258 (34%), Gaps = 11/258 (4%) Query: 79 RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138 + + +V ++ ++ + ++++ I I+ + SA Sbjct: 79 KNELKIRNYSVKTQKAYLGHVRRLLQ-FHKKCIDNIDKDDIKLYLLRLVDANKSAAYIDQ 137 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198 ++ FK+ + ++RPKR+ + ++ + + + R Sbjct: 138 AVSA-FKFLYIDLKNIDDVDFDIKRPKREQKLPSVLNTNEVFKIIESV-DNLKHRAIIML 195 Query: 199 LLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF 256 + +GLR S++ ++ + + IK K L + ++LL Sbjct: 196 IYSAGLRVSEAANLRIEDIDSKRNLIHIKGAKGKKDRYTLLSNAMLELLRQYFKIYRPEC 255 Query: 257 I----NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMAT 310 N ++ + F+ A KAGV K S H +R AT + G + Sbjct: 256 WLFEGQNGEKHITVRSIQKVFEKAAFKAGVKKKVSVHTLRHSFATHLLENGTDLRYIQEL 315 Query: 311 YGWKTVDQAETYTKGADR 328 G + E YT ++R Sbjct: 316 LGHASPSTTEIYTHVSER 333 >gi|206603937|gb|EDZ40417.1| Integrase [Leptospirillum sp. Group II '5-way CG'] Length = 388 Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats. Identities = 52/333 (15%), Positives = 97/333 (29%), Gaps = 15/333 (4%) Query: 1 MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60 M + + + G F G+RIR ++ Y T S Sbjct: 1 MARKDGINRGIREIPLGSGIWWVDF-WHEGKRIRKKVGPKAQARAVYERLKTESRLGTLV 59 Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 RK L +Y + L + + GD + + Sbjct: 60 PKPVRKHEPLFGELAEQYI---RYADLHHKRKGDDTPRLKWWLDAFGDKLALTLKPYMVE 116 Query: 121 SGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 +E + P++ + L ++ ++ AV+ E + NP V PK +R T + Sbjct: 117 EVMEKMNKEGYKPATIARCLVVLKAVYNRAVKNEIIERNPIARVFAPKFDNSLVRYLTTD 176 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-----NIFSIKTQKTGTI 232 ++ E + L++G R + + + + + K+ + + Sbjct: 177 QEERLFEALPE--RLHPIVTVALHTGCRQGELLKLVWEDVDFNAGTIFLRDTKSGDSRRV 234 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRK 291 + + L F + M F KAG+ H +R Sbjct: 235 LMNSKVQEVLLALPGRDTPGAPVFTDTLGGPMEGRNLRRDFDRAIKKAGLAPFRFHDLRH 294 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324 A+ A GA L G K+ Y Sbjct: 295 TFASRLAMMGANDRTLQTLLGHKSQRMILRYAH 327 >gi|46446417|ref|YP_007782.1| XerD protein [Candidatus Protochlamydia amoebophila UWE25] gi|46400058|emb|CAF23507.1| probable XerD protein [Candidatus Protochlamydia amoebophila UWE25] Length = 291 Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats. Identities = 47/279 (16%), Positives = 96/279 (34%), Gaps = 24/279 (8%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR------KHTPS 131 Y S LA N+ ++ + H+++ ++ + + Sbjct: 11 YLASE--KGLAQNTLEAYRRDLFSFATFLKQRSVNNWSQIHLQAIIDYLALKQQQHYASA 68 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWS 187 S + L +++VLF++ R+ + N L +E PK + E++ + Sbjct: 69 SICRALIAIKVLFRFLKREGMITTNILLLMETPKLWQLIPDVLSLEEIDRILAIPNIQTW 128 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247 G++ + E L GLR S+ C+ + + + K G V + + + Sbjct: 129 RGARDKAILETLYACGLRVSELCQLKIYDVDDTFVR-VLGKGGKERIVPIGQQAIAAIDG 187 Query: 248 T--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297 E FI + + K A +A + + S H R AT Sbjct: 188 YLSFREGGENSRNEFLFITKKSKPLTRALVWKLVKFYARQASIFKSISPHTFRHTFATHL 247 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKN 335 D GA + G +++ + YT + R++ + Sbjct: 248 LDHGADLRVIQDMLGHASINSTDRYTHVSQIRLQQAFQA 286 >gi|197118261|ref|YP_002138688.1| integrase/recombinase XerD [Geobacter bemidjiensis Bem] gi|197087621|gb|ACH38892.1| integrase/recombinase XerD [Geobacter bemidjiensis Bem] Length = 292 Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats. Identities = 45/267 (16%), Positives = 95/267 (35%), Gaps = 21/267 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMR 141 A N+ ++ ++ + G+ + I + + K P S + L+++R Sbjct: 16 KGAAANTVSAYSRDLNRYLLFLGEREPDGIRPSDVTGFLAKLKGEGIAPRSRARALSALR 75 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----QFKSFWSEGSQPRLAFE 197 +L ++ +R+ Y +NP +E PK + + +++ ++ + + E Sbjct: 76 MLHRFLLREGYSELNPTAIIEAPKGVRKLPAVLSGREVEALLSSPLDTGAQELRDKAMLE 135 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMTPIGKETF- 255 L +GLR S+ + + + + K V + + + Sbjct: 136 LLYATGLRVSELVGLKLSEVNLSAGYLMTIGKGDKERLVPMGESACHATGVYLQQARGEL 195 Query: 256 ---------FINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATA 304 F++ M+ F K +A +AGV S H +R AT + GA Sbjct: 196 LKEKASTLLFLSRLGGGMSRQAFWNIIKKRALQAGVRTSISPHTLRHSFATHLLENGADL 255 Query: 305 HELMATYGWKTVDQAETYTKGADRIRL 331 + G + + YT R R+ Sbjct: 256 RSVQIMLGHADLSSTQIYTHVT-RERM 281 >gi|183221814|ref|YP_001839810.1| tyrosine recombinase XerC [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911886|ref|YP_001963441.1| tyrosine site-specific recombinase XerC [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167776562|gb|ABZ94863.1| Tyrosine site-specific recombinase XerC [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167780236|gb|ABZ98534.1| Tyrosine recombinase XerC [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 311 Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats. Identities = 53/293 (18%), Positives = 97/293 (33%), Gaps = 22/293 (7%) Query: 60 YINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITT 116 + P P + L YR + + ++ ++ + D + Sbjct: 7 EVQIPEHFPQVMADLFRSYRTYLKIEKNYSEHTLFAYLRDLKFFFEFCLKEEIDILSVDV 66 Query: 117 KHIRSGVESRKHTP----SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 +R+ K + + + L+S+R +K+ R+E + NP L V PK K + Sbjct: 67 LDVRAYFADLKSSKKQDKRTQSRKLSSLRTFYKFLFREEKIGANPILQVSFPKTKKRLPK 126 Query: 173 PWTKEDMQQFKSFWS------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IK 225 +T + + + G + + E L +GLR + A + L + S Sbjct: 127 NFTPIETEDILDYEDPEKKEVLGKRDKAIVEVLYSTGLRVFELVNAKLSDLNEELTSLKV 186 Query: 226 TQKTGTIITVELPDGFMKLLAMT-----PIGKETFFINNDKQKMNATQFSIWFKAKATKA 280 K V + L G E F+N K+ + + Sbjct: 187 MGKRRKERFVFIGPEAKVALQEYLDERGNGGPEEIFLNQRGGKLTTRGIRYILSERRSVM 246 Query: 281 GVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 G+ K + H R AT +AGA + G ++ + Y R RL Sbjct: 247 GMEKAITPHKFRHTFATDLLNAGADIRAVQELLGHSSLSSTQVYL-SVSRDRL 298 >gi|157964440|ref|YP_001499264.1| site-specific tyrosine recombinase XerD [Rickettsia massiliae MTU5] gi|157844216|gb|ABV84717.1| Tyrosine recombinase XerD [Rickettsia massiliae MTU5] Length = 306 Score = 133 bits (335), Expect = 4e-29, Method: Composition-based stats. Identities = 49/287 (17%), Positives = 100/287 (34%), Gaps = 35/287 (12%) Query: 73 WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRK--ITTKHIRSGVESRKH- 128 IS++ + +L+ NS +S++ + ITT++IR +E Sbjct: 2 EFISQFLEMLLAERALSKNSILSYKRDLFDFHNYLATQKLSELNITTENIRDWIEYLASN 61 Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 S + +++++ +K+ + + + A NP L+V+ PK + + + + ++ Sbjct: 62 DLQARSINRKISTIKSYYKFLISENHTAFNPVLNVDLPKYQNKLPEILSIDQIKSLLEHC 121 Query: 187 -----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--------QNNIFSIKTQKTGTII 233 EG + L SG R S+ + + + K Sbjct: 122 SQDNSPEGIRLNAMIHLLYASGFRVSELVSLKLADILTNKTSKGEVRKIFSVLGKGNKER 181 Query: 234 TVELPDG----FMKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWFKAKATKA 280 + + + K LA+ + N M F+I K+ A A Sbjct: 182 VIVINEQAVISIAKYLAIRDVFVNKAKPRNLIYLFPSSALAGYMTRQNFAILLKSAALYA 241 Query: 281 GV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 G+ + S H +R A+ + GA + G + + YT Sbjct: 242 GLNPEHISPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTH 288 >gi|163750315|ref|ZP_02157556.1| integrase/recombinase XerD [Shewanella benthica KT99] gi|161329987|gb|EDQ00972.1| integrase/recombinase XerD [Shewanella benthica KT99] Length = 308 Score = 133 bits (335), Expect = 4e-29, Method: Composition-based stats. Identities = 44/300 (14%), Positives = 97/300 (32%), Gaps = 36/300 (12%) Query: 74 LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHTP 130 LI + L+ N+ ++ + R +++ + IR ++ R Sbjct: 18 LIDTFLDDLWSNRGLSDNTLAAYRTDLRHFDRYMQKLGGGLVQVSQQLIRDYLDVRFDKG 77 Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS--- 184 +S+ + ++S+R + + + ++ + ++P ++ PK + ++ D+ + Sbjct: 78 FARTSSARLMSSLRRFYGFLILKKLIQVDPIARIKSPKLARKLPDSLSEADVDILLNEPD 137 Query: 185 -FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-------------G 230 + R E L +GLR ++ ++ L ++ Sbjct: 138 LQEPIECRDRAMLELLYATGLRVTELVSLTMEQLSLRQGLVRVVGKGGKERLVPLGEIAV 197 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHG 288 + L +LL F K A +AG+ + S H Sbjct: 198 NEVEHYLEGARAELLKGKLSDVLFPSRRGQMM--TRQTFWHRIKLYALRAGIVTHISPHT 255 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 +R AT + GA + G + + YT A R+S + P Sbjct: 256 MRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAK---------ARLSQLHSEHHP 306 >gi|94969887|ref|YP_591935.1| tyrosine recombinase XerC subunit [Candidatus Koribacter versatilis Ellin345] gi|94551937|gb|ABF41861.1| tyrosine recombinase XerC subunit [Candidatus Koribacter versatilis Ellin345] Length = 300 Score = 133 bits (335), Expect = 4e-29, Method: Composition-based stats. Identities = 47/280 (16%), Positives = 97/280 (34%), Gaps = 23/280 (8%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS-- 132 ++++ +S + +V++ ++ + ++ G + I IR + S Sbjct: 10 VAQFLRSLKEKNSSVHTIKAYTTDLEEFSAFLGPAKWDDIDHVRIRGFLSHLYDKGLSKP 69 Query: 133 -AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS- 190 + L ++R L+KW R+ +V NP V PK + R T E++ + Sbjct: 70 SVARALAALRSLYKWLAREGFVEQNPAALVATPKLPKKLPRVPTMEELNTVMDAEMPEAA 129 Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246 + L FE L G+R S+ + ++ + +I + G + A Sbjct: 130 SFPERDALIFELLYGCGIRNSELTGINLDDIRWSNEAILIRGKGKKERFVPFGDAAAVAA 189 Query: 247 MTPIGKETFFINNDK-------------QKMNATQFSIWFKAKATKAGVN--KSAHGVRK 291 + K + Q++ + K A G+ H +R Sbjct: 190 KVYLKKRQDILAERHKSTNALLINLRDVQRLTSRSVGRIVKKIAVARGLPADVHPHTLRH 249 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 T + GA + G + + + YT+ + R L Sbjct: 250 AFGTHLLEEGADLRAIQELLGHERLATTQRYTQLSTRHVL 289 >gi|304398153|ref|ZP_07380028.1| tyrosine recombinase XerC [Pantoea sp. aB] gi|304354439|gb|EFM18811.1| tyrosine recombinase XerC [Pantoea sp. aB] Length = 301 Score = 133 bits (335), Expect = 4e-29, Method: Composition-based stats. Identities = 41/283 (14%), Positives = 92/283 (32%), Gaps = 21/283 (7%) Query: 70 TLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGVES 125 TL + + + L+ ++ S+ ++ + + ++ +RS Sbjct: 4 TLLEAVDGFLRYLKVERQLSPLTQSSYARQLAALVAIADEMKLSSWAQLEPAQVRSMAAR 63 Query: 126 RKHTPSSAIQ---FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + SA L+++R W V Q ++ NP V P++ + +++ Q Sbjct: 64 SRRAGLSASSLALRLSALRSFLDWQVSQGLLSANPAKGVMTPRKARHLPKNIDVDEVNQL 123 Query: 183 KSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELP 238 + + R E + GLR S+ +H+ ++ K V + Sbjct: 124 LEIDLDDPLAVRDRAMLEVMYGGGLRLSELVNMDCRHVDLDSGEVWVVGKGSKERRVPIG 183 Query: 239 DGFMKLLAMTPIGKETFFINN-------DKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289 + + +ETF + +++ F + G+ + H + Sbjct: 184 RTAVTWIQHWLPLRETFGAQDDALFLSTRGNRISPRNVQKRFAEWGIRQGLASHIHPHKL 243 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 R AT ++ + G + + YT D L Sbjct: 244 RHSFATHLLESSGDLRAVQELLGHANLSTTQIYTH-LDFQHLA 285 >gi|238853068|ref|ZP_04643460.1| tyrosine recombinase XerC [Lactobacillus gasseri 202-4] gi|238834316|gb|EEQ26561.1| tyrosine recombinase XerC [Lactobacillus gasseri 202-4] Length = 307 Score = 133 bits (335), Expect = 4e-29, Method: Composition-based stats. Identities = 46/302 (15%), Positives = 109/302 (36%), Gaps = 27/302 (8%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYF---DQIIRKSGDF-DYRKITTKHIRSGVESR 126 LI +++ ++ + + N+ S+ + Q +++G F + K+ ++ + ++S Sbjct: 6 DKLIEQFQDYLNYERNYSKNTVSSYLNDLDEAKQFFKENGGFGSWDKVKSRDVEIFLQSL 65 Query: 127 K---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + ++ + ++S+R +++ V++E + +P ++ + + + + +++M+Q Sbjct: 66 AAQNRSRTTQARKMSSLRSFYRFLVKREVLENDPMQTISLRLGEKKLPQFFYEKEMRQVF 125 Query: 184 S----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238 + R FE +G+R S+ + + + I K V Sbjct: 126 DSLVGHDKLVVRNRAMFELFYATGMRLSEMASLKLDQIDFGLKIILVHGKGNKDRYVPFG 185 Query: 239 DGFMKLLAMTPIGKE-----------TFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285 L F+NN QK+ + KAGV Sbjct: 186 KDAFDALREYRDDVRPALLGQNEDLGYVFLNNRGQKLTGRGIEYIMQQVFIKAGVGGKVH 245 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345 H +R AT + GA + G +++ + YT L + Sbjct: 246 PHMLRHSFATEMLNNGADLRSVQELLGHESLSTTQIYTHVT-MKHLQADYQKFFPRKDKK 304 Query: 346 DD 347 D+ Sbjct: 305 DE 306 >gi|256829239|ref|YP_003157967.1| tyrosine recombinase XerD [Desulfomicrobium baculatum DSM 4028] gi|256578415|gb|ACU89551.1| tyrosine recombinase XerD [Desulfomicrobium baculatum DSM 4028] Length = 292 Score = 133 bits (335), Expect = 4e-29, Method: Composition-based stats. Identities = 41/280 (14%), Positives = 94/280 (33%), Gaps = 21/280 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTP- 130 I Y + LA + ++ S + +I + + + Sbjct: 5 IDAYLQHLTVIRGLAEKTVEAYGSDLLFFRDFLSELGGSLHQIDEHTLFLYMVHLRRKGL 64 Query: 131 --SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +S + ++S+R F++ V++ ++A +P ++ PK + +++++ + Sbjct: 65 KNTSMARNISSLRGFFEFLVQERHLASSPAALLDSPKLVRKLPEVLSRDEVTALLDRPAL 124 Query: 189 GS----QPRLAFEFLLYSGLRCSDSC---------RAGVQHLQNNIFSIKTQKTGTIITV 235 + + R E L GLR S+ +AG+ + + Sbjct: 125 NTPLGFRDRTMLELLYACGLRVSELVSLTAPDFDPQAGLLRVLGKGSKERYVPLHDSAVS 184 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293 + + + +T F+N ++ + A +AG+ S H +R Sbjct: 185 FMLSFLRQWRPLFGPKTDTVFLNRSGLGLSRQGVWKLLRRYALEAGITRPVSPHTLRHSF 244 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 AT + GA + G + E YT + + Sbjct: 245 ATHLLEGGADLRTVQILLGHSDIMATEIYTHVQSARMVAL 284 >gi|257791851|ref|YP_003182457.1| tyrosine recombinase XerD [Eggerthella lenta DSM 2243] gi|257475748|gb|ACV56068.1| tyrosine recombinase XerD [Eggerthella lenta DSM 2243] Length = 297 Score = 133 bits (335), Expect = 4e-29, Method: Composition-based stats. Identities = 37/279 (13%), Positives = 76/279 (27%), Gaps = 25/279 (8%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGVESRK 127 L EY + + ++ + Q + K G + + I + Sbjct: 2 DELYREYLAYLRVERGSSPLTVSAYAADLKDYAQFLEKRGVESLDDVDREVIVAYESDLF 61 Query: 128 HTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 S+ + ++ ++ ++ VR+ Y NP +++ PK + + S Sbjct: 62 GRGYAASTVDRHVSVLKGFHRFLVREGYARRNPADTIQLPKAPDRLPDVLSVAQVDAMLS 121 Query: 185 FW----SEGSQPRLAFEFLLYSGLRCSDSCRAG-VQHLQNNIFSIKTQKTGTIITVELPD 239 + R E L GLR S+ + + K + Sbjct: 122 RPLDEGPLALRNRAILEVLYGCGLRVSECTGLDLGDAILEEGYLHILGKGNKERIAPISG 181 Query: 240 GFMKLLAMTPIGKETFFINNDKQ------------KMNATQFSIWFKAKATKAGV-NKSA 286 ++ L + + + ++ GV N Sbjct: 182 AALRALRDYLERGRPELVRSYAKSTSAVFLNARGGRLTRQSVHSLVAEAGRFIGVANLHP 241 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 H +R AT GA + G + + YT Sbjct: 242 HTLRHSFATHMLAGGADLRVIQEILGHSDISTTQIYTHV 280 >gi|314923700|gb|EFS87531.1| tyrosine recombinase XerD [Propionibacterium acnes HL001PA1] Length = 306 Score = 133 bits (335), Expect = 4e-29, Method: Composition-based stats. Identities = 44/279 (15%), Positives = 90/279 (32%), Gaps = 30/279 (10%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHI---RSGVESRK 127 + +Y + L+ N+ ++ + G ++T + R ++ Sbjct: 9 VEDYLRHLVVERGLSDNTVQAYRRDLLRYQEYLGSRGIGSLAEVTRVDVEEFRRHLDHIG 68 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 P+S + + ++R L ++AV V + + R + T + ++ + Sbjct: 69 LAPASVTRCVVAVRNLHRFAVGSGQVQADVTAGMSPGTRSRRLPKALTMDQVESLLAAPD 128 Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-----TQKTGTIITVELP 238 EG + E L +G R S+ C V ++ + K V L Sbjct: 129 TSTVEGLRDAALLELLYGTGARVSEVCALDVDDIRRVLDDPDLGLRLIGKGDKERIVPLG 188 Query: 239 DGFMKLLAMTPIGKETFFI-----------NNDKQKMNATQFSIWFKAKATKAGVN---K 284 K + I + N ++++ + AG++ Sbjct: 189 SYAAKAVDAWLIRGRPAWAEIGNGEHALLLNTRGRRLSRQSAWAVIRRAGEAAGLDVEHL 248 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 S H +R AT D GA + G +V + YT Sbjct: 249 SPHSLRHSYATHLLDGGADVRVVQELLGHSSVTTTQIYT 287 >gi|283768283|ref|ZP_06341195.1| phage integrase, N-terminal SAM domain protein [Bulleidia extructa W1219] gi|283104675|gb|EFC06047.1| phage integrase, N-terminal SAM domain protein [Bulleidia extructa W1219] Length = 297 Score = 133 bits (334), Expect = 4e-29, Method: Composition-based stats. Identities = 47/281 (16%), Positives = 92/281 (32%), Gaps = 24/281 (8%) Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT-------KHIR 120 +LK + Y + A GSL ++ ++ + I ++ Sbjct: 4 KKSLKSFLD-YIRLARTGSL--HTEKAYRRDVENFIAYLEKKKIHTWKRVDKNFLLEYFT 60 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + + + SS + L+S+R F++ E + NP S + K T + +Q Sbjct: 61 TLRQKNHLSNSSYDRHLSSLRSFFRYLNVVEGIGHNPMSSFKNVKTSRPLPEYLTVDQVQ 120 Query: 181 QFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KTGTIITV 235 + G + R E L GLR S+ +Q + + ++ K V Sbjct: 121 DLLDSFDLEDKKGLRNRCIVELLYACGLRISECANIKIQDIHFRDYYVRVMGKESKERIV 180 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQK-------MNATQFSIWFKAKATKAGVNK--SA 286 LL +F +D ++ + + K + + Sbjct: 181 PFYKELGDLLTKYLKKYGSFSQLSDPFFKGSKGKAISVRSIQLLLEKKGRELKLPFQLHP 240 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 H +R AT D GA + + G + + + YT + Sbjct: 241 HVLRHSFATHLLDNGADLRIVQSLLGHENLSTTQIYTHVSQ 281 >gi|293556237|ref|ZP_06674827.1| site-specific recombinase, phage integrase family [Enterococcus faecium E1039] gi|291601656|gb|EFF31918.1| site-specific recombinase, phage integrase family [Enterococcus faecium E1039] Length = 378 Score = 133 bits (334), Expect = 4e-29, Method: Composition-based stats. Identities = 43/359 (11%), Positives = 103/359 (28%), Gaps = 43/359 (11%) Query: 15 RTRHGKIIYYFRK--GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 R R + YYF G R ++ T A + + E T +K Sbjct: 6 RKRGKRWYYYFEDINDDGSRKKVEKVGGDTRPEAEAALRKVLSDIDETGQYFLGTDTRVK 65 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 + + + +L N+ ++ I G ++ +++ + + Sbjct: 66 QYLDFWMEEYVKLNLKYNTYENYRFTIKNHINGYLGKKKLTDLSPALLQNFINAEFKKGY 125 Query: 132 SAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI------RPWTKEDMQQF 182 S + ++ AV + + + + E + + ED Sbjct: 126 SKKTMTITHSVLKNALNMAVYPWGLIKQNPMLYVKIPKYEERPTTKKDLKIISLEDFDHM 185 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----------------IFSIKT 226 EG + Y+G+R + C ++ + Sbjct: 186 LEITPEGHPFYIPLNIGFYTGMRVGEVCGLTWDNVDFSNGTITVEKQMVKNGGAWVYGTP 245 Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--------------NATQFSIW 272 + + + T+ + + +L + + K + + Sbjct: 246 KTSSSNRTIFIGQTLLAILKKHKKQQLENRMKYGKLYIDSNAVCTKEDGELVTPSVVKWN 305 Query: 273 FKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330 + + ++ + H +R AT+ + GA E+ G + TY+ D++R Sbjct: 306 TRRISNALSLSFNFHSLRHTHATLLLENGAKMKEISERLGHSRISITMDTYSHVTDKMR 364 >gi|332178648|gb|AEE14337.1| Tyrosine recombinase xerC [Thermodesulfobium narugense DSM 14796] Length = 306 Score = 133 bits (334), Expect = 4e-29, Method: Composition-based stats. Identities = 37/279 (13%), Positives = 89/279 (31%), Gaps = 20/279 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----KHTPSSAIQFLTSM 140 + N+ S+ S D + + + + + SS + L ++ Sbjct: 24 RGYSENTVNSYRSDIKSFFNFFKDRINDTVDIEKLLLYYSNYLISNNYKASSLERKLVAI 83 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAF 196 + ++ ++ Y + PK+ ++ D+ +F S + L F Sbjct: 84 KQFLIFSFQEGY-YKGKIPDIVLPKKDKRLPFFLSRSDIFNIFNFISNSKQFTIRDLLIF 142 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMT------- 248 + L ++G+R S+ + ++ I+ K + + L Sbjct: 143 KMLYFTGMRISELLNLKIDNVNFESMDIRVLGKGSKERIIPFHRDILDLFNSYLIFRQES 202 Query: 249 -PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307 E F+N+ + ++ K + H R AT GA+ + Sbjct: 203 LKPKCENIFVNSKGKPLSRQYIWKMCKKVGNFLNLELHPHIFRHSLATHLLSGGASIKTI 262 Query: 308 MATYGWKTVDQAETYTKGA--DRIRLGIKNSRRISSVVD 344 G +++ + YT + + + + SV++ Sbjct: 263 QEILGHESISTTQIYTHLIYEELKKEYFRAFKNFDSVIN 301 >gi|261879004|ref|ZP_06005431.1| integrase/recombinase XerD [Prevotella bergensis DSM 17361] gi|270334388|gb|EFA45174.1| integrase/recombinase XerD [Prevotella bergensis DSM 17361] Length = 306 Score = 133 bits (334), Expect = 4e-29, Method: Composition-based stats. Identities = 47/271 (17%), Positives = 91/271 (33%), Gaps = 23/271 (8%) Query: 77 EYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESRKHTP--- 130 Y + S + N+ +++ ++++ D + + ++ S Sbjct: 12 RYIRYLKLQRSYSPNTLDAYQRDLNKLLDFLRKVDVAPFDVKLEDLQQFAASLHEHGIGS 71 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---- 186 S + L+ +R +++ V Y+ ++P +E P T +++ + Sbjct: 72 KSQARILSGVRAFYRFLVLDGYLEVDPTELLESPHLPKHLPEYLTTDEVDMLQDSIDLST 131 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLL 245 +EG + R E L GLR S+ + L I+ V + D ++ L Sbjct: 132 NEGHRNRAIIEVLFSCGLRVSELTNLKLSDLFLEEQFIRVMGKGNKERLVPISDRAIEEL 191 Query: 246 AMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFS 293 + I N + T I K +A AG+ K+ H +R Sbjct: 192 GYWFDDRRQMIIKPGEEDYVFLNRRGHHLTRTMILIMIKRQAEAAGIKKTISPHTLRHSF 251 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324 AT GA + G + E YT Sbjct: 252 ATALLRGGADLRVIQDLLGHSNIGTTEMYTH 282 >gi|224025282|ref|ZP_03643648.1| hypothetical protein BACCOPRO_02021 [Bacteroides coprophilus DSM 18228] gi|224018518|gb|EEF76516.1| hypothetical protein BACCOPRO_02021 [Bacteroides coprophilus DSM 18228] Length = 314 Score = 133 bits (334), Expect = 4e-29, Method: Composition-based stats. Identities = 54/286 (18%), Positives = 106/286 (37%), Gaps = 24/286 (8%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKH 128 +I++Y++ S + N+ ++ + D+++ D ++T + + Sbjct: 8 GKIITKYKQYLKLEKSFSSNTIDAYLTDLDKLMAYLTLEGKDCLEVTLDDLETFSAGLHD 67 Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ---- 181 S + L+ +R +++ + ++Y+ +PC +E P+ T E++ + Sbjct: 68 IGINARSQARILSGVRAFYRFLLLEDYIQQDPCELLESPQTGRHLPDVLTVEEIDRLIGS 127 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG 240 EG + R E L GLR S+ C + L N F K V + Sbjct: 128 IDRSSREGQRNRAILETLYSCGLRVSELCNLKLSDLYLNEGFIKVEGKGSKQRLVPISPK 187 Query: 241 FMKLLAMTPI----------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHG 288 + L ++ FI+ + ++ K A AG+ K+ H Sbjct: 188 AISELNNYFPNRNAGLIKPGYEDFVFISRFGKNISRIMVFHIIKELAGMAGIKKTISPHT 247 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334 R AT + GA + G +++ E YT DR RL + Sbjct: 248 FRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYTH-IDRNRLRQE 292 >gi|153930897|ref|YP_001385278.1| phage integrase family integrase/recombinase [Clostridium botulinum A str. ATCC 19397] gi|152926941|gb|ABS32441.1| integrase/recombinase, phage integrase family [Clostridium botulinum A str. ATCC 19397] Length = 331 Score = 133 bits (334), Expect = 4e-29, Method: Composition-based stats. Identities = 40/262 (15%), Positives = 83/262 (31%), Gaps = 13/262 (4%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQ 135 Y + L++ + +++ I +R + R SS Sbjct: 62 YLAAKKLDGLSLKTLKNYKYNLAIFADYL-RKPLATINAMDLRMFLAQRCKHMKASSVNG 120 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195 ++ ++ F W +EY+ NP L +++ K+ +E+++ + + + Sbjct: 121 QISILKSFFGWLHMEEYIPKNPSLKLKQTKQPKRVRHALNEEEIEILRQACETD-REKAL 179 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMT------ 248 EFL+ +G R S+ + N S K V LL Sbjct: 180 IEFLISTGCRLSEVIGVNKTDIDWNEMSLFVIGKGDKERKVYFNTKAKILLKKYLLTRSD 239 Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHE 306 ++ K A +A ++KS H R AT ++G Sbjct: 240 ENIALFVTSKKPHNRLGGRSIQREIKNIAIRAKIDKSIYPHLFRHSFATHKLNSGMPLPV 299 Query: 307 LMATYGWKTVDQAETYTKGADR 328 + G + + Y + ++ Sbjct: 300 IQHLMGHENPSTTQVYAELSEE 321 >gi|108758883|ref|YP_632026.1| tyrosine recombinase XerD [Myxococcus xanthus DK 1622] gi|108462763|gb|ABF87948.1| tyrosine recombinase XerD [Myxococcus xanthus DK 1622] Length = 310 Score = 133 bits (334), Expect = 4e-29, Method: Composition-based stats. Identities = 45/282 (15%), Positives = 89/282 (31%), Gaps = 25/282 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SR 126 L+ + L+ + ++ + + +T R Sbjct: 4 LLDAFIAFIRAERGLSGKTVDAYAADINVYFEDLRSRGVSDVTQARQEDVSAHLSALGKR 63 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 S + L ++R ++ V + +P ++ P+ + T E+++Q + Sbjct: 64 GLGKRSQARHLAALRGFHRFLVAERMADKDPTEDLDTPRSARKLPSFLTLEEVEQLLAAP 123 Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 E G + + E L +GLR S+ C G+ +Q + + V L Sbjct: 124 DERTSTGVRDKAMLEVLYATGLRVSELCGLGINDVQLTAGYLVAKGKGAKERLVPLGSVA 183 Query: 242 MKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289 ++ + + F+ F K A KAG+ S H + Sbjct: 184 IEKVQAYLAESRPAVLGRRKSQALFVTPRGSGFTRQGFWKLLKRYALKAGILKPLSPHKL 243 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 R AT + GA + G + + YT + RL Sbjct: 244 RHSFATHLVERGADLRAVQQMLGHADLATTQIYTH-VNAARL 284 >gi|323140540|ref|ZP_08075467.1| tyrosine recombinase XerC [Phascolarctobacterium sp. YIT 12067] gi|322414992|gb|EFY05784.1| tyrosine recombinase XerC [Phascolarctobacterium sp. YIT 12067] Length = 302 Score = 133 bits (334), Expect = 4e-29, Method: Composition-based stats. Identities = 31/288 (10%), Positives = 90/288 (31%), Gaps = 27/288 (9%) Query: 68 PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRK--------ITTKH 118 TT+ + + + ++ S++ + + + + Sbjct: 2 DTTVNNYPERFLTYLEVEKNCSQHTIESYQKDLAAFAEFMLRRNKQNFFWQQTGPLDVRG 61 Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + +++ + + ++++R FK+ VR+ + +P V PK + + + + Sbjct: 62 YLAELNEKQYARRTIARRISALRSFFKYLVREAVIEYSPLTKVRTPKLEKKLPAFLDEIE 121 Query: 179 MQ----QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTII 233 + G + + E L +G R S+ ++ + + + K Sbjct: 122 INELLAMPDKSKVLGVRDQAVLEMLYATGCRVSELVGLTLERVDLSNRFVLLLGKGNKER 181 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKM-----------NATQFSIWFKAKATKAGV 282 + + L+ ++ + ++ + + Sbjct: 182 VMPVGHTCCAALSTYYRVRQQLMLQYQQKHDFIFVNNRGGRLTDRSVRRILEKYINMLAI 241 Query: 283 NK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 +K S H +R AT + GA + G + + YT ++ Sbjct: 242 HKNVSPHTIRHSFATHLLEHGADLRSVQELLGHANLSTTQIYTHVSNE 289 >gi|294619348|ref|ZP_06698812.1| phage integrase family protein [Enterococcus faecium E1679] gi|291594397|gb|EFF25810.1| phage integrase family protein [Enterococcus faecium E1679] Length = 378 Score = 133 bits (334), Expect = 4e-29, Method: Composition-based stats. Identities = 43/359 (11%), Positives = 102/359 (28%), Gaps = 43/359 (11%) Query: 15 RTRHGKIIYYFRK--GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 R R + YYF G R ++ T A + + E T +K Sbjct: 6 RKRGKRWYYYFEDINDDGSRKKVEKVGGDTRPEAEAALRKVLSDIDETGQYFLGTDTRVK 65 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 + + + +L N+ ++ I G ++ +++ + + Sbjct: 66 QYLDFWMEEYVKLNLKYNTYENYRFTIKNHINGYLGKKKLTDLSPALLQNFINAEFKKGY 125 Query: 132 SAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI------RPWTKEDMQQF 182 S + ++ AV + + + + E + + ED Sbjct: 126 SKKTMTITHSVLKNALNMAVYPWGLIKQNPMLYVKIPKYEERPTTKKDLKIISLEDFDHM 185 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN----------------NIFSIKT 226 EG + Y+G+R + C ++ Sbjct: 186 LEITPEGHPFYIPLNIGFYTGMRVGEVCGLTWDNVDFSNGTITVEKQMVKNDGEWVYGTP 245 Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--------------NATQFSIW 272 + + + T+ + + +L + + K + + Sbjct: 246 KTSSSNRTIFIGQTLLAILKKHKKQQLENRMKYGKLYIDSNAVCTKEDGELVTPSVVKWN 305 Query: 273 FKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330 + + ++ + H +R AT+ + GA E+ G + TY+ D++R Sbjct: 306 TRRISNALSLSFNFHSLRHTHATLLLENGAKMKEISERLGHSRISITMDTYSHVTDKMR 364 >gi|187925186|ref|YP_001896828.1| site-specific tyrosine recombinase XerD [Burkholderia phytofirmans PsJN] gi|187716380|gb|ACD17604.1| tyrosine recombinase XerD [Burkholderia phytofirmans PsJN] Length = 311 Score = 133 bits (334), Expect = 4e-29, Method: Composition-based stats. Identities = 46/288 (15%), Positives = 87/288 (30%), Gaps = 27/288 (9%) Query: 66 KKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 ++ + + L+ N+ ++ + T Sbjct: 18 ASSASIDAFCDALWLEH----GLSRNTLDAYRRDLRLFCEWLAQSRNASLDTASEADLNA 73 Query: 125 ----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 RK +SA + L+ R + WAVR+ ++P + + K+ ++ ++ Sbjct: 74 YSAARRKDKSTSANRRLSVFRRYYGWAVREHRTKVDPTVRIRSAKQPPRFPSTLSEAQVE 133 Query: 181 QFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITV 235 + + R E + SGLR ++ + N ++ + Sbjct: 134 ALLGAPDINTALGLRDRTMLELMYASGLRVTELVTLKTVEVGLNEGVVRVMGKGSKERLI 193 Query: 236 ELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--N 283 + + F+ N + M QF K A AGV Sbjct: 194 PFGEEAHSWIERYLREARPALLGARATDALFVTNRAEGMTRQQFWNIIKRHAVVAGVHAP 253 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 S H +R AT + GA + G + + YT A R RL Sbjct: 254 LSPHTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVA-RERL 300 >gi|298368470|ref|ZP_06979788.1| tyrosine recombinase XerD [Neisseria sp. oral taxon 014 str. F0314] gi|298282473|gb|EFI23960.1| tyrosine recombinase XerD [Neisseria sp. oral taxon 014 str. F0314] Length = 292 Score = 133 bits (334), Expect = 4e-29, Method: Composition-based stats. Identities = 48/296 (16%), Positives = 106/296 (35%), Gaps = 28/296 (9%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKH 128 LI + + L+ N+ S+ +++ + G D+ + + + + + Sbjct: 4 DELIDKLLEHLWLNHRLSQNTLQSYRRDLEKVAARLRQGGKDWFGAAAEDLAAAIYVPEE 63 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 SS + L++ + L+ W E A NP + P ++ T+ +++ + Sbjct: 64 KASSQARALSACKRLYAWLEETEKRADNPTRFLTSPHKEQPLPGLITEAQIEKLLAAPDV 123 Query: 189 GS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243 + + + E + +GLR +++ + + L N + K V L + + Sbjct: 124 DTPHGLRDKTLLEVMYATGLRVTEAVKLKMSDLDLNKGWINTIGKGDKQRYVPLGEEAVY 183 Query: 244 LLAMTP----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKF 292 + + F++ K ++ + K A AG+ S HG+R Sbjct: 184 WIERYCAESRPLLLKNKICDELFVSQKKSGISRQLAWMIVKEYADAAGIRSLSPHGLRHA 243 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 AT + GA + G + + YT A++ R+ +V P Sbjct: 244 FATHLVNHGADLRVVQMLLGHADISTTQIYTHVANQ---------RLKELVGKHHP 290 >gi|284033002|ref|YP_003382933.1| tyrosine recombinase XerD [Kribbella flavida DSM 17836] gi|283812295|gb|ADB34134.1| tyrosine recombinase XerD [Kribbella flavida DSM 17836] Length = 313 Score = 133 bits (334), Expect = 4e-29, Method: Composition-based stats. Identities = 52/308 (16%), Positives = 107/308 (34%), Gaps = 37/308 (12%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126 + +S Y LA N+ S+ + G ++T + + Sbjct: 4 IGRAVSAYLDHLTVERGLAANTLASYRRDLRRYDEYLAGAGISALGRVTEAVVGDFLMRL 63 Query: 127 KH--------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + T SSA + + ++R K+ +R+ I+P +V+ P + + ++ Sbjct: 64 REGDEHHPPLTASSAGRTVVAVRGFHKFCLREGLTVIDPAAAVKPPVPPQRLPKALSVDE 123 Query: 179 MQQFKSFWS--------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKT 229 + + + + ++ EFL +G R S++ V + + K Sbjct: 124 VTRILAAAAGADAEPAVLATRDAALLEFLYGTGARISEAVGLDVDDVDLESGQVLLRGKG 183 Query: 230 GTIITVELPDGFMKLLAMTPIG-----------KETFFINNDKQKMNATQFSIWFKAKAT 278 V + + L+ + F+N +++ + A Sbjct: 184 SKERVVPVGSYAREALSAYQVRGRPDLVARGRGTHALFLNARGGRLSRQSAWTVLRRAAQ 243 Query: 279 KAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT-KGADRIRL--GI 333 +AG++K S H +R AT D GA + G +V + YT D++R Sbjct: 244 RAGISKEISPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQVYTLVTVDKLREVYAT 303 Query: 334 KNSRRISS 341 + R +SS Sbjct: 304 SHPRALSS 311 >gi|210634278|ref|ZP_03298051.1| hypothetical protein COLSTE_01973 [Collinsella stercoris DSM 13279] gi|210158880|gb|EEA89851.1| hypothetical protein COLSTE_01973 [Collinsella stercoris DSM 13279] Length = 302 Score = 133 bits (334), Expect = 4e-29, Method: Composition-based stats. Identities = 40/283 (14%), Positives = 85/283 (30%), Gaps = 28/283 (9%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGVESR 126 L+ EY +L+ + ++ + + +T + + V R Sbjct: 4 LERCCREYLGHLSVERNLSPYTVAAYRRDLEAYRAFLAERGVTGPDSVTRRDVEDFVAHR 63 Query: 127 KHTPS---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ--- 180 + T + S + L++++ L ++ VR+ P ++ PK + + Sbjct: 64 RETGAADASVNRALSAVKGLHRFLVREGISTTYPTSAIRTPKAAKHLPDVISIDQACALL 123 Query: 181 -QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238 Q + G++ A E L GLR S+ V+ L + + K + Sbjct: 124 DQPFPATAAGARDHAALEVLYGCGLRVSELTGLDVRDLHLDEEFLLVMGKGSKERLAPIT 183 Query: 239 DGFMKLLAMTPIGKETFFINNDKQ---------------KMNATQFSIWFKAKATKAGVN 283 ++ L + + +++ + G+ Sbjct: 184 GSALRALEAYLTLGARDELMGHARAAGVSPAVFLNARGTRLSRQSVHAICERYGRMVGIE 243 Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 H +R AT GA L G + + YT Sbjct: 244 GLHPHTLRHSFATHMLAGGADLRVLQEILGHADIATTQIYTHV 286 >gi|32474020|ref|NP_867014.1| integrase/recombinase [Rhodopirellula baltica SH 1] gi|32444557|emb|CAD74556.1| integrase/recombinase [Rhodopirellula baltica SH 1] gi|327543299|gb|EGF29732.1| integrase/recombinase [Rhodopirellula baltica WH47] Length = 300 Score = 133 bits (334), Expect = 4e-29, Method: Composition-based stats. Identities = 43/283 (15%), Positives = 91/283 (32%), Gaps = 28/283 (9%) Query: 72 KWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSG-----DFDYRKITTKHIRSGVES 125 + I+ + + + + + ++ G +T + +R + Sbjct: 2 RTAITRFLQYMATERNASDLTIKAYREDLFAFAEWIGQAEAGRIQLDSLTPQQLRQFQAA 61 Query: 126 RKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + ++ + L S+R FK+A+R+ + NP + P+ + T E++ + Sbjct: 62 LQQAGYARTTIARKLASLRSFFKFAMREGMASSNPAKPLRNPRSSRKLPHVLTSEEVGRL 121 Query: 183 KSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVEL 237 G + R E + SGLR S+ L + + + L Sbjct: 122 LVAPPAISEAGLRDRAILETMYSSGLRVSELVGLRDGDLDFSQGITRVRGKGRKERISPL 181 Query: 238 PDGFMKLLAMTPIGKE------------TFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 +K + + F+N + + KA ++ Sbjct: 182 GSYAIKAIQAYAGRRSRSPESEKLGRAAPVFVNRFGNILTTRSVGRMLEKYIAKAELDTR 241 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 S H +R AT D GA + G K++ + YT + Sbjct: 242 TSPHTLRHSFATHLLDRGADIRSVQELLGHKSLTTTQIYTHVS 284 >gi|295677507|ref|YP_003606031.1| tyrosine recombinase XerD [Burkholderia sp. CCGE1002] gi|295437350|gb|ADG16520.1| tyrosine recombinase XerD [Burkholderia sp. CCGE1002] Length = 316 Score = 133 bits (334), Expect = 4e-29, Method: Composition-based stats. Identities = 47/284 (16%), Positives = 86/284 (30%), Gaps = 27/284 (9%) Query: 70 TLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS----GVE 124 ++ + + L+ N+ ++ + T Sbjct: 27 SIDAFCDALWLEH----GLSRNTLDAYRRDLRLFCEWLAHTRNASLDTASEADLSAYSAA 82 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 +K +SA + L+ R + WAVR+ A +P L + K+ ++ ++ Sbjct: 83 RQKDKATSANRRLSVFRRYYAWAVREHRAAADPTLRLRSAKQPPRFPSTLSEAQVEALLG 142 Query: 185 FWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPD 239 + + R E + SGLR ++ + N ++ V + Sbjct: 143 APDIDTPLGLRDRTMLELMYASGLRVTELVTLKTVEVGLNEGVVRVTGKGSKERLVPFGE 202 Query: 240 GFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287 + F+ + M QF K A AGV S H Sbjct: 203 EAHAWIERYLREARPALLGPRAADALFVTARAEGMTRQQFWNIIKRHAQAAGVHAPLSPH 262 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +R AT + GA + G + + YT A R RL Sbjct: 263 TLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVA-RERL 305 >gi|302387936|ref|YP_003823758.1| integrase family protein [Clostridium saccharolyticum WM1] gi|302198564|gb|ADL06135.1| integrase family protein [Clostridium saccharolyticum WM1] Length = 295 Score = 133 bits (334), Expect = 4e-29, Method: Composition-based stats. Identities = 46/278 (16%), Positives = 96/278 (34%), Gaps = 27/278 (9%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTP---S 131 Y + + N+ +S++ Q+ G + K+T + S + + + Sbjct: 11 YLR--EIKKTSKNTEVSYQRDLMQLASFLEQQGIREVDKVTKTSLTSYILHLEKEGKATT 68 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----S 187 + + L SM+ F + ++ + +P ++ PK + + T +++ S Sbjct: 69 TISRCLASMKAFFHFECKEGRIQKDPAELLKAPKVEKKAPTILTVDEVNSLLSQPGGETP 128 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247 + + R E L +G+R S+ + +I I + V L+ Sbjct: 129 KELRDRAMLELLYATGIRVSELIHLKKTDVNLSIGYITCRDEHKERMVPFGKVAKLALSA 188 Query: 248 TPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAGV--NKSAHGVRKFSAT 295 +F+ + + + F K KAG+ + + H +R A Sbjct: 189 YMERGRVYFLRDQESPWLFTNCNGKSMSRQGFWKIIKFYGDKAGIKADITPHTLRHSFAA 248 Query: 296 ISADAGATAHELMATYGWKTVDQAET---YTKGADRIR 330 GA H + A G + + YT+G D R Sbjct: 249 HLLRNGADIHAVQAMLGHSDMATTQMYMNYTQGEDLRR 286 >gi|163788788|ref|ZP_02183233.1| 3-dehydroquinate dehydratase [Flavobacteriales bacterium ALC-1] gi|159876025|gb|EDP70084.1| 3-dehydroquinate dehydratase [Flavobacteriales bacterium ALC-1] Length = 302 Score = 133 bits (334), Expect = 4e-29, Method: Composition-based stats. Identities = 53/294 (18%), Positives = 98/294 (33%), Gaps = 34/294 (11%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY--------RKITTKHIRS 121 + I++YR L+ NS ++ ++I + I + I + Sbjct: 3 WQQAITDYRHYLQIERGLSKNSIENYCYDIKKLIVYLEENALIVSPITTDNAIVKQFIYT 62 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ- 180 +S S + ++ +R F + + + Y NP +E P+ + + +D+ Sbjct: 63 ISKSLN--ARSQARLISGLRNFFDYLIFENYRETNPLDLIESPRIGRKLPDTLSIDDIDN 120 Query: 181 --------QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGT 231 + + G + R E L GLR S+ + L + F T K Sbjct: 121 LVNNIDLSYQYNGVNLGERNRAIIETLYSCGLRVSELIELKISDLFFDEGFIKVTGKGDK 180 Query: 232 IITVELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAG 281 V + +A+ + F+N +K+ K K+G Sbjct: 181 QRFVPIGLTTQNYIAIWIGIRNHIEVQPNSKDNLFLNYKGKKLTRAMIFTIIKKLVEKSG 240 Query: 282 VNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 + K S H R AT + GA + G +++ E Y DR L Sbjct: 241 ITKNVSPHTFRHSFATHLLENGADLRAIQMMLGHESITTTEIYMH-VDRSHLSD 293 >gi|90413180|ref|ZP_01221176.1| tyrosine recombinase [Photobacterium profundum 3TCK] gi|90325871|gb|EAS42323.1| tyrosine recombinase [Photobacterium profundum 3TCK] Length = 298 Score = 133 bits (334), Expect = 4e-29, Method: Composition-based stats. Identities = 42/279 (15%), Positives = 98/279 (35%), Gaps = 24/279 (8%) Query: 75 ISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRKH 128 I + + L+ N+ +S+ + ++ + S D +YR +T + + + Sbjct: 8 IERFLDAMWMERGLSENTLMSYRNDLTKLRKWSEDKNYRLVTLSSDDLQRYQQWLFDADF 67 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +S + ++++R LF++ R++ +P + P+ + T+E + Sbjct: 68 KQTSRARMVSAIRRLFQYLYREKMRDDDPSSMMVSPRLPKRLPKDLTEEQVGALLDAPDT 127 Query: 189 G----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243 + + E L +GLR ++ ++++ ++ V + + + Sbjct: 128 NNPIELRDKAMLELLYATGLRVTELVSLTMENVSLRQGVVRVMGKGDKERLVPMGESAID 187 Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290 + F + ++M F K A AG++ S H +R Sbjct: 188 WIEEFIDSGRPQLLGEKSSDVLFPSKRARQMTRQTFWHRIKHYAVIAGIDTDTLSPHVMR 247 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + GA + G + + YT A Sbjct: 248 HAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER 286 >gi|291548057|emb|CBL21165.1| tyrosine recombinase XerD subunit [Ruminococcus sp. SR1/5] Length = 294 Score = 133 bits (334), Expect = 4e-29, Method: Composition-based stats. Identities = 42/271 (15%), Positives = 96/271 (35%), Gaps = 23/271 (8%) Query: 75 ISEYRKSAHWGSL-AVNSRISFESYFDQIIRKSGDF------DYRKITTKHIRSGVESRK 127 I E+ H + N+ +S++ ++ D D ++ + S +E + Sbjct: 5 IREFITYLHNRKRTSHNTEVSYQRDLKKMAVYFADRGIYDIRDVGELELEGYLSYMERGQ 64 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S+ + + S+R LF++ ++ + +P L ++ PK + T +++ + Sbjct: 65 FASSTISRNVASIRALFQYLYQENRIERDPSLELKPPKVEKRMPEILTVDEVDRLLKQPD 124 Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 + + E L +G+R S+ R ++ L + + + + + Sbjct: 125 LNTPKGIRDSAMLELLYATGMRVSELLRLNLEDLNLRLGYVVCHDEDKERVIPIGNVCKT 184 Query: 244 LLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRK 291 + E+ F N + M+ F K A +AG+ + + H +R Sbjct: 185 AMEKYLKEARGKFVKENETESLFTNCSGKSMSRQGFWKVLKGYAEEAGIQHDITPHTLRH 244 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETY 322 A GA + G + + Y Sbjct: 245 SFAAHMLQNGADVKSVQEMLGHSDISTTQVY 275 >gi|259500641|ref|ZP_05743543.1| integrase/recombinase XerC [Lactobacillus iners DSM 13335] gi|302191330|ref|ZP_07267584.1| integrase/recombinase CodV [Lactobacillus iners AB-1] gi|259168025|gb|EEW52520.1| integrase/recombinase XerC [Lactobacillus iners DSM 13335] Length = 307 Score = 133 bits (334), Expect = 4e-29, Method: Composition-based stats. Identities = 37/283 (13%), Positives = 93/283 (32%), Gaps = 26/283 (9%) Query: 72 KWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIR---SGV 123 + Y + ++N+ ++ + G D+ K++++ I + Sbjct: 5 DDFLKLYYNYLKNERNYSINTCKAYMDDLSEARTFFVENGGFIDWLKLSSRDIEIFIQYL 64 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 +K S+ + ++++R +++ ++ + +NP + + ++M + Sbjct: 65 AQKKDKRSTQSRKISTLRSFYRFLNKRNIIPVNPVELISLRGEHKKLPEFLYSDEMVKVL 124 Query: 184 S----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238 G + E +G+R S+ + + + I K V Sbjct: 125 KSISTTTPLGLRNMALLELFYATGMRVSEISNLKLDQIDFELNLILVHGKGNKDRYVAFG 184 Query: 239 DGFMKLLAM-----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-- 285 + L F+N++ ++ + K AGV+ S Sbjct: 185 EEAKTALNNYLVEARKKLLLHKTDYGYVFLNSNGNRITSRGLEYIIKNIFLNAGVSASVH 244 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 H +R AT + GA + G +++ + YT + Sbjct: 245 PHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTHVTKQ 287 >gi|148284235|ref|YP_001248325.1| site-specific tyrosine recombinase XerD [Orientia tsutsugamushi str. Boryong] gi|146739674|emb|CAM79467.1| site-specific recombinase [Orientia tsutsugamushi str. Boryong] Length = 309 Score = 133 bits (334), Expect = 4e-29, Method: Composition-based stats. Identities = 40/288 (13%), Positives = 103/288 (35%), Gaps = 35/288 (12%) Query: 73 WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRKH 128 + ++ ++ +++ NS ++++ + +TTK I S ++ Sbjct: 2 DFLEQFLETVLAEKNVSANSLLAYKRDLQDFSDFLKSIQLQSSLAVTTKDIDSFIQHLLS 61 Query: 129 TP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 S + ++++R + + + + V + ++E P+ T+ + + ++++ + Sbjct: 62 KNLSFRSIARKISTLRQYYLFLLTENVVQPDLVTNIEVPRYSTKLPKILSIKEIKMLIDY 121 Query: 186 WSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-------TII 233 + + + L +GLR S+ + L+ + + K + Sbjct: 122 CFKDTTAEGIRTLAMICLLYSTGLRVSELVSVKITDLKFDHNTGKIKNHFVILGKGNKER 181 Query: 234 TVELPDGFMKLLAMTPIGKETFFINND-------------KQKMNATQFSIWFKAKATKA 280 V + D +++ ++ F + + M F+I K A A Sbjct: 182 LVIMNDLTGDVISRYLPYRDFFSPFKNAKNSVYLFPSKAKQGYMTRQNFAILLKNAAINA 241 Query: 281 GV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 G+ N S H +R A+ + GA + G + + YT Sbjct: 242 GLSPDNVSPHILRHSFASHLLEGGADLKVIQELLGHVDISSTQIYTHV 289 >gi|308188856|ref|YP_003932987.1| Tyrosine recombinase xerC [Pantoea vagans C9-1] gi|308059366|gb|ADO11538.1| Tyrosine recombinase xerC [Pantoea vagans C9-1] Length = 301 Score = 133 bits (334), Expect = 4e-29, Method: Composition-based stats. Identities = 41/282 (14%), Positives = 91/282 (32%), Gaps = 21/282 (7%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGVESR 126 L+ + + + L+ ++ S+ ++ + + ++ +RS Sbjct: 5 LQEAVDGFLRYLKVERQLSPLTQSSYARQLAALVAIADEMKLGSWAQLEPAQVRSMAARS 64 Query: 127 KHTPSSAIQ---FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + SA L+++R W V Q ++ NP V P++ + +++ Q Sbjct: 65 RRAGLSASSLALRLSALRSFLDWQVSQGLLSANPAKGVMTPRKARHLPKNIDVDEVNQLL 124 Query: 184 SFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD 239 + R E + GLR S+ +H+ ++ K V + Sbjct: 125 EIDLNDPLAVRDRAMLEVMYGGGLRLSELVNMDCRHVDLDSGEVWVVGKGSKERRVPIGR 184 Query: 240 GFMKLLAMTPIGKETFFINN-------DKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290 + + +ETF + +++ F + GV + H +R Sbjct: 185 TAVTWIQHWLPLRETFGGQDDALFLSTRGNRISPRNVQKRFAEWGVRQGVASHIHPHKLR 244 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 AT ++ + G + + YT D L Sbjct: 245 HSFATHLLESSGDLRAVQELLGHANLSTTQIYTH-LDFQHLA 285 >gi|323527182|ref|YP_004229335.1| tyrosine recombinase XerD [Burkholderia sp. CCGE1001] gi|323384184|gb|ADX56275.1| tyrosine recombinase XerD [Burkholderia sp. CCGE1001] Length = 314 Score = 133 bits (334), Expect = 4e-29, Method: Composition-based stats. Identities = 44/295 (14%), Positives = 85/295 (28%), Gaps = 26/295 (8%) Query: 65 RKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 ++ + + L+ N+ ++ + T Sbjct: 20 TASSASIDAFCDALWLEH----GLSRNTLDAYRRDLRLFSEWLAQTRSASLDTASEADLN 75 Query: 124 E----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 +K +SA + L+ R + WAVR+ ++P L + K+ ++ + Sbjct: 76 AYSAARQKDKSTSANRRLSVFRRYYGWAVREHRAKVDPTLRIRSAKQPPRFPSTLSEAQV 135 Query: 180 QQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIIT 234 + G + R E + SGLR ++ + N ++ Sbjct: 136 EALLGAPDIETPLGLRDRTMLELMYASGLRVTELVTLKTVEVGLNEGVVRVMGKGSKERL 195 Query: 235 VELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV-- 282 + + + F+ N + M QF K A AGV Sbjct: 196 IPFGEEAHGWIERYLRDARPALLGARAADALFVTNRAEGMTRQQFWNIIKRHAAAAGVHA 255 Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 S H +R AT + GA + G + + YT A + Sbjct: 256 PLSPHTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVARERLKSLHAMH 310 >gi|56459934|ref|YP_155215.1| site-specific recombinase [Idiomarina loihiensis L2TR] gi|56178944|gb|AAV81666.1| Site-specific recombinase [Idiomarina loihiensis L2TR] Length = 300 Score = 133 bits (334), Expect = 4e-29, Method: Composition-based stats. Identities = 51/283 (18%), Positives = 99/283 (34%), Gaps = 22/283 (7%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRKH 128 I + + + N++ ++ S + D ++ + + Sbjct: 12 IDAFTEHLWLHHGSSNNTQAAYRSDLRRYCEYLLSLKKSLMDTDEVVLQDYLLWRRMQGL 71 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-- 186 +P S +FL+S + F++AV+Q++VA++P ++RPK ++ED+ Sbjct: 72 SPRSTSRFLSSTKKFFQFAVKQQWVAVDPTARLKRPKLPQSIPHSLSEEDVISLLEQPDT 131 Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243 G + R E L +GLR ++ R L ++ V L + ++ Sbjct: 132 ETPIGLRDRTMLEVLYATGLRVTELIRLQYDQLSRQQGLVRVIGKGNKERLVPLGEDALE 191 Query: 244 LLAMTPIG---------KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKF 292 L F+ + F K A +AG+ + S H +R Sbjct: 192 WLDNYLKHGRPAITDKSSPWIFVTQRGSLLTRQAFWYRLKHYAEEAGIYAHLSPHTLRHA 251 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 AT + GA L G + + YT+ A + Sbjct: 252 FATHLLNHGADLRVLQLLLGHSDLSTTQIYTQVARERLQALHA 294 >gi|301166099|emb|CBW25674.1| putative integrase [Bacteriovorax marinus SJ] Length = 399 Score = 133 bits (334), Expect = 5e-29, Method: Composition-based stats. Identities = 55/339 (16%), Positives = 106/339 (31%), Gaps = 24/339 (7%) Query: 20 KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79 K R GRRI + + + + L + K K ++ + Sbjct: 60 KYRIDVRMPDGRRITKSFSRKYD-ADKFKAELLLEKTGIQDTGIYIKNDVKFKDFVATWF 118 Query: 80 KSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138 ++ G A ++ ++ S I+ G+ + I +H R S T SA Sbjct: 119 ETQVKGRKAKKTQQAYVSDLRNHILPILGEIQLKHIRYQHARLLENSIIETGKSARTVNK 178 Query: 139 SM---RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195 M + + AV+ EY+ +P + + + W+KE+++ F F L Sbjct: 179 VMMEFKTILNDAVKLEYLLKSPVRGYPELQEEPRHLTFWSKEEIRVFIDFNKANPLLDL- 237 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK------------TGTIITVELPDGFMK 243 + L +GLR + C + ++ + T V + Sbjct: 238 YIVALNTGLRLGEICGLCWDRVDFTTNNLVINRSLTRDGIRNTTKTHRGRYVPMNTIVRD 297 Query: 244 LLAMT--PIGKETFFINNDKQKMNATQFSIW-FKAKATKAGVN--KSAHGVRKFSATISA 298 +L + F + + + FK +AG+ H +R A+ Sbjct: 298 ILQKRLRTRISKFVFSTQTGKPLPYDHVTQRHFKKSQREAGLENIIRFHDLRHTFASHFM 357 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNS 336 G + L G + Y D +R + Sbjct: 358 MNGGNIYTLQKLLGHTDIKTTMIYAHLDQDFLREAAEVV 396 >gi|258593730|emb|CBE70071.1| Tyrosine recombinase xerD [NC10 bacterium 'Dutch sediment'] Length = 295 Score = 133 bits (334), Expect = 5e-29, Method: Composition-based stats. Identities = 45/282 (15%), Positives = 103/282 (36%), Gaps = 25/282 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHT 129 LI +Y + LA NS ++ +I+ G +R+++ + + + + Sbjct: 4 LIEDYLRYLAVEKGLAENSLAAYGRDLRRIVGYFKQGGVGSFREVSRGQVARLLLTLREA 63 Query: 130 ---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ----F 182 P + + +S+R L+++ + Q++V +P +E ++E++++ Sbjct: 64 GLAPRTVSRHTSSLRGLYRYLLTQDHVKEDPTAHLESSSPWVRLPGVLSQEEVERLLAAP 123 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-----KTGTIITVEL 237 + G + + E L +GLR S+ + + + + Q + + Sbjct: 124 LTSNPLGLRDKAMLELLYAAGLRVSEMVTLRLSEVDLEVGYVHCQGKGGKDRVVPLGRDA 183 Query: 238 PDGFMKLLAMTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 + L + + + N + F +A A AG+++ + H + Sbjct: 184 QTAVRRYLETSRPYLQRGWSSSTLFLNRFGYPLTRQGFWKLLRAYAIAAGIDRRVTPHTL 243 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 R AT + GA + G + + YT R L Sbjct: 244 RHSFATHLLERGADLRAVQMMLGHADISTTQIYTH-VSRAHL 284 >gi|189459721|ref|ZP_03008506.1| hypothetical protein BACCOP_00349 [Bacteroides coprocola DSM 17136] gi|189433568|gb|EDV02553.1| hypothetical protein BACCOP_00349 [Bacteroides coprocola DSM 17136] Length = 312 Score = 133 bits (334), Expect = 5e-29, Method: Composition-based stats. Identities = 53/295 (17%), Positives = 107/295 (36%), Gaps = 24/295 (8%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKH 128 + +I +Y++ SL+ N+ ++ + D++ + DY ++T + + + Sbjct: 8 EKIIIKYKQYLKLEKSLSENTVQAYLTDLDKLFAYLTLENIDYTQVTLQDLETFSAGLHD 67 Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----Q 181 P S + L+ +R + + V +Y+ +P +E P+ + E++ Sbjct: 68 IGIHPRSQARILSGIRSFYHFLVLDDYIQQDPTELLESPQIGKHLPDVLSVEEIDALIGS 127 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDG 240 EG + E L GLR S+ C + L + F K V + Sbjct: 128 IDRSTREGQRNCAILETLYSCGLRVSELCNLKISDLYFDEGFIKVEGKGSKQRLVPISPR 187 Query: 241 FMKLLAMTPI----------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288 + + I ++ FI+ + ++ K A+ G+ K S H Sbjct: 188 AINEIRNYFIERNQGLIKPEYEDFVFISRFGKNISRIMVFHIIKELASLIGLKKKISPHT 247 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343 R AT + GA + G +++ E YT D+ RL + + Sbjct: 248 FRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYTH-IDKNRLRQEIIGHHPRNI 301 >gi|293568954|ref|ZP_06680267.1| phage integrase family protein [Enterococcus faecium E1071] gi|291588387|gb|EFF20222.1| phage integrase family protein [Enterococcus faecium E1071] Length = 378 Score = 133 bits (334), Expect = 5e-29, Method: Composition-based stats. Identities = 44/359 (12%), Positives = 103/359 (28%), Gaps = 43/359 (11%) Query: 15 RTRHGKIIYYFRK--GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 R R + YYF G R ++ T A + + E T +K Sbjct: 6 RKRGKRWYYYFEDINDDGSRKKVEKVGGDTRPEAEAALRKVLSDIDETGQYFLGTDTRVK 65 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 + + + +L N+ ++ I G ++ +++ + + Sbjct: 66 QYLDFWMEEYVKLNLKYNTYENYRFTIKNHIDGYLGKKKLTDLSPALLQNFINAEFKKGY 125 Query: 132 SAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI------RPWTKEDMQQF 182 S + ++ AV + + + + E + + ED Sbjct: 126 SKKTMTITHSVLKNALNMAVYPWGLIKQNPMLYVKIPKYEERPTTKKDLKIISLEDFDHM 185 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----------------IFSIKT 226 EG + Y+G+R + C ++ + Sbjct: 186 LEITPEGHPFYIPLNIGFYTGMRVGEVCGLTWDNVDFSNGTTTVEKQMVKNDGAWIYGTP 245 Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--------------NATQFSIW 272 + + + T+ + + +L + + K + + Sbjct: 246 KTSSSNRTIFIGQTLLAILKKHKKQQLENRMKYGKLYIDSNAVCTKEDGGLVTPSVVKWN 305 Query: 273 FKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330 K + ++ + H +R AT+ + GA E+ G + TY+ D++R Sbjct: 306 TKRISNALSLSFNFHSLRHTHATLLLENGAKMKEISERLGHSRISITMDTYSHVTDKMR 364 >gi|94266574|ref|ZP_01290258.1| Tyrosine recombinase XerD [delta proteobacterium MLMS-1] gi|93452792|gb|EAT03324.1| Tyrosine recombinase XerD [delta proteobacterium MLMS-1] Length = 325 Score = 133 bits (334), Expect = 5e-29, Method: Composition-based stats. Identities = 45/285 (15%), Positives = 91/285 (31%), Gaps = 28/285 (9%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY-------RKITTKHIRSG--- 122 L+ + + LA N+ ++ + +IT +H+R+ Sbjct: 31 LLDFFLQYLAAERRLAANTLTAYHTDLLSFFDFLARRRPTPAISGPAEITPEHLRAYLEA 90 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 R+ S + L+++R F++ R+ + +P ++ PK + +++ Q Sbjct: 91 CRRRQIAARSNARRLSALRAFFRFLRRENLIPADPSALLDLPKPGRPLPKVLNLDEVNQL 150 Query: 183 KS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 + + L +G+R S+ V + K + Sbjct: 151 LAGPAAATPLALRDHAMLHLLYATGMRVSELVNLPVAAVNQAGHLRVLGKGSKERLIPFG 210 Query: 239 DGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286 + LA F+ N M +F + +A ++K Sbjct: 211 AAAGRSLARYITQGRPRLLKKRRSDFLFVTNRGTAMTRLRFWQIIRDRARVCRIDKEVGP 270 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 H +R AT + GA + A G + + YT D RL Sbjct: 271 HVLRHSFATHLLEHGADLRAVQAMLGHADIATTQIYTH-VDAQRL 314 >gi|298528177|ref|ZP_07015581.1| tyrosine recombinase XerD [Desulfonatronospira thiodismutans ASO3-1] gi|298511829|gb|EFI35731.1| tyrosine recombinase XerD [Desulfonatronospira thiodismutans ASO3-1] Length = 310 Score = 133 bits (334), Expect = 5e-29, Method: Composition-based stats. Identities = 47/279 (16%), Positives = 86/279 (30%), Gaps = 22/279 (7%) Query: 78 YRKSA-HWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTP---S 131 + + A LA + ++ + + D I + + + + Sbjct: 14 FLEHALVIKGLAHQTVAAYTEDLSTFLEFLQEKGKDVLDINDQVLLVYLMFLRRKGLQSR 73 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----S 187 S + + S+R + + Q + NP +E PK R + +++ S Sbjct: 74 SLARHMASLRGFYAYLHEQGLLKDNPAEMLENPKLPQLLPRVLSIPEVESILSQPSTGDK 133 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGV-QHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246 G++ + E L +GLR S+ V K V L M+ L Sbjct: 134 LGARDKTMLEMLYAAGLRVSELINLKVLDFDPQAGIIRVWGKGARERLVPLHFSCMQWLD 193 Query: 247 MTPIGKETFFINNDKQKM--------NATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296 + F + + K AG+ K S H +R AT Sbjct: 194 FYLQHWRSSFSPRVDKVFINRSGKALSRQGVWKIIKKYTVMAGIKKDVSPHTLRHSFATH 253 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIK 334 + GA + G + E YT +DR++ Sbjct: 254 LLEGGADLRTVQVLLGHSDITATEIYTHVQSDRLKSAHD 292 >gi|19553231|ref|NP_601233.1| site-specific tyrosine recombinase XerC [Corynebacterium glutamicum ATCC 13032] gi|62390867|ref|YP_226269.1| site-specific tyrosine recombinase XerC [Corynebacterium glutamicum ATCC 13032] gi|41326206|emb|CAF20368.1| SITE-SPECIFIC RECOMBINASE [Corynebacterium glutamicum ATCC 13032] Length = 315 Score = 133 bits (334), Expect = 5e-29, Method: Composition-based stats. Identities = 44/310 (14%), Positives = 100/310 (32%), Gaps = 18/310 (5%) Query: 45 PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQII 103 + S P+ L LI ++ + + + + S + Sbjct: 3 ESKKKVARSGRNAPPSGISGADAPSKLHTLIDDFCEHLDLVVGRSAATIRGYRSDLYAMA 62 Query: 104 RKSGDFDYRKI-TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162 D D + T + + ++ + S++ WA + ++ + + Sbjct: 63 DTIEDIDNFSLPTLRQWLGIAVDEGKSRATLARRTASVKAFSSWAQKNGHLKADEAARLI 122 Query: 163 RPKRKTEGIRPWTKEDMQQF-----KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217 PK + + ++ F + E + E L +G+R ++ C + + Sbjct: 123 SPKITRDLPKILGEQQAGDFVENAASTNEEEFLRDSAILELLYATGMRVAELCGIDLSDI 182 Query: 218 QNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKETFFINN-------DKQKMNATQF 269 + ++ K V + K L ++ + Q++NA Q Sbjct: 183 DYDRKMVRVLGKGNKERVVPFGESAHKALRNWLDVRDEMTEDPKALFVGVRGQRINARQV 242 Query: 270 SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 A GV+ S H +R +AT D GA ++ G ++ + YT +++ Sbjct: 243 RRIVDRAAKVTGVDHLSPHSLRHTAATHLLDGGADLRQVQELLGHSSMQTTQIYTHVSNK 302 Query: 329 IRLGIKNSRR 338 L + + Sbjct: 303 RLL--EAFNK 310 >gi|284008429|emb|CBA74880.1| tyrosine recombinase [Arsenophonus nasoniae] Length = 303 Score = 133 bits (334), Expect = 5e-29, Method: Composition-based stats. Identities = 46/280 (16%), Positives = 91/280 (32%), Gaps = 24/280 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRK 127 LI ++ + LA N+ S+ + ++ Y +T + + Sbjct: 12 LIEQFLDTIWLEHDLAANTLSSYRTDLQTLVGWLSRQGYDLLTVGVMDLQSFLAERVEGG 71 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 + +S+ + L++MR LF++ R++ +P + PK + ++ ++ Sbjct: 72 YKATSSARLLSAMRRLFQYFYREKLRTDDPTAQLSAPKLPKRLPKDLNEKQVEDLLHAPT 131 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 + + E L GLR S+ + + I+ V L + + Sbjct: 132 TQDPIELRDKTMLEVLYACGLRVSELVGLTLTDISLRQGVIRVVGKGNKERLVPLGEEAI 191 Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289 L F + +M F K A AG++ S H + Sbjct: 192 YWLETYLTESRPILLNGLTNDVLFPSKRGTQMTRQTFWHRIKYYAAIAGIDSAKLSPHVL 251 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + GA + G + + YT A Sbjct: 252 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 291 >gi|157804202|ref|YP_001492751.1| site-specific tyrosine recombinase XerC [Rickettsia canadensis str. McKiel] gi|166918899|sp|A8F033|XERC_RICCK RecName: Full=Tyrosine recombinase xerC gi|157785465|gb|ABV73966.1| tyrosine recombinase [Rickettsia canadensis str. McKiel] Length = 305 Score = 133 bits (334), Expect = 5e-29, Method: Composition-based stats. Identities = 45/287 (15%), Positives = 104/287 (36%), Gaps = 28/287 (9%) Query: 68 PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRS 121 T+++ LI+++++ + + ++ +S+ + + ++ I T IR Sbjct: 3 DTSIQELINKWQQYLILQKNYSHHTVVSYNNDLKHFLEFMHYYNSDLVTINHIKTADIRL 62 Query: 122 GVESRK------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 T SS + L++++ +K+ + + + S++ PK+ + + Sbjct: 63 IRSWLAKRNCNNFTTSSISRGLSAVKNFYKFLEKTTQLNSHIIFSIKSPKKTKLLPKSLS 122 Query: 176 KEDMQQFKSFW-------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228 ++D+ + + + +GLR S++ HLQN F K Sbjct: 123 EDDVVISLKHIEEYGNVKWVELRNKALLVLIYATGLRISEALSITKLHLQNLEFIRIIGK 182 Query: 229 TGTIITVEL-------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 + ++++L E F +K+ T F+ G Sbjct: 183 GSKERIIPWLPIVKNLITQYLEILPYKLGENEPIFRGKQGKKLQPTVFNRELIKLKRFYG 242 Query: 282 VN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 + +AH R A+ + GA + G K++ + YTK + Sbjct: 243 LPEHLTAHSFRHSFASHLLEHGADLRSIQELLGHKSLSTTQNYTKTS 289 >gi|88608752|ref|YP_506043.1| tyrosine recombinase XerD [Neorickettsia sennetsu str. Miyayama] gi|88600921|gb|ABD46389.1| tyrosine recombinase XerD [Neorickettsia sennetsu str. Miyayama] Length = 305 Score = 133 bits (334), Expect = 5e-29, Method: Composition-based stats. Identities = 42/296 (14%), Positives = 101/296 (34%), Gaps = 30/296 (10%) Query: 74 LISEYR-KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---T 129 + ++ K + +N+ S+ + + + + +++ + + + + Sbjct: 8 YVEQFLEKILVERNATLNTISSYRTDLRLLSTFLKKRGLKDASKENLYEYIANLRAQQLS 67 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 ++ + + + R F + ++ + NP S+E PK+ R TKE++ +F G Sbjct: 68 NATIRRKIATFRQFFSFLYSEKISSTNPAQSLELPKKTLVLPRYLTKEEVFSLLTFLEAG 127 Query: 190 ----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQN----NIFSIKTQKTGTIITVELPDGF 241 + E L SG+R S+ V ++ I K + Sbjct: 128 QPATLRLYAILEILYSSGMRVSELINMKVSDIRPLLNGQQHIIIVGKGRKERILPFSKKA 187 Query: 242 MKLLAMTPIGKETFFIN------NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKF 292 +++L + ++ + M+ + K A K ++ S H +R Sbjct: 188 IQVLKLYLTSYQSNSPWLFPGAGRKDRPMSRQRLGQLLKELALKCKIDPKRISPHVIRHS 247 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 AT D G + G + + YT + ++ +++ P Sbjct: 248 FATHLLDNGMDIKVVQDLLGHAQITTTQIYTHISQ---------HKLHKEIEAKHP 294 >gi|330447418|ref|ZP_08311067.1| tyrosine recombinase XerD [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491609|dbj|GAA05564.1| tyrosine recombinase XerD [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 298 Score = 133 bits (334), Expect = 5e-29, Method: Composition-based stats. Identities = 36/280 (12%), Positives = 94/280 (33%), Gaps = 24/280 (8%) Query: 74 LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESR---K 127 +I + + L+ N+ S+ + +++ + ++ ++ + Sbjct: 7 IIERFLDAMWMERGLSENTLASYRNDLMKLLNWLKQESRNVINVSVDDLQRYQQWLFDKD 66 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + +S + ++++R LF++ R++ +P + PK + ++ + Sbjct: 67 YKQTSRARMVSAIRRLFQYLHREKMRDDDPSAMLVTPKLPKRLPKDLSEAQVDALLDAPD 126 Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 + + E L +GLR ++ ++++ ++ V + + + Sbjct: 127 VNDPIELRDKAMLELLYATGLRVTELVTLTMENISLRQGVVRITGKGDKERLVPMGENAI 186 Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289 + F + ++M F K A AG++ S H + Sbjct: 187 DWIEQFIETGRPQLLGEKSSDVLFPSRRARQMTRQTFWHRIKHYAVLAGIDAETLSPHVM 246 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + GA + G + + YT A Sbjct: 247 RHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER 286 >gi|209521010|ref|ZP_03269744.1| tyrosine recombinase XerD [Burkholderia sp. H160] gi|209498544|gb|EDZ98665.1| tyrosine recombinase XerD [Burkholderia sp. H160] Length = 318 Score = 133 bits (334), Expect = 5e-29, Method: Composition-based stats. Identities = 45/284 (15%), Positives = 86/284 (30%), Gaps = 27/284 (9%) Query: 70 TLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH----IRSGVE 124 ++ + + L+ N+ ++ + T Sbjct: 29 SIDAFCDALWLEH----GLSRNTLDAYRRDLRLFCEWLAHTRNASLDTASEADLTAYSAA 84 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 ++ +SA + L+ R + WAVR+ A +P L + K+ ++ ++ Sbjct: 85 RQQDKATSANRRLSVFRRYYAWAVREHRAAADPTLRIRSAKQPPRFPSTLSEAQVEALLG 144 Query: 185 FWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPD 239 + + R E + SGLR ++ + N ++ + + Sbjct: 145 APDIDTPLGLRDRTMLELMYASGLRVTELVTLKTVEVGLNEGVVRVTGKGSKERLIPFGE 204 Query: 240 GFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287 + F+ + M QF K A AGV S H Sbjct: 205 EAHAWIERYLREARPALLGPRAADALFVTARAEGMTRQQFWNIIKRHAQVAGVHAPLSPH 264 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +R AT + GA + G + + YT A R RL Sbjct: 265 TLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVA-RERL 307 >gi|227551195|ref|ZP_03981244.1| site-specific recombinase XerD [Enterococcus faecium TX1330] gi|227179663|gb|EEI60635.1| site-specific recombinase XerD [Enterococcus faecium TX1330] Length = 314 Score = 133 bits (334), Expect = 5e-29, Method: Composition-based stats. Identities = 42/293 (14%), Positives = 93/293 (31%), Gaps = 28/293 (9%) Query: 61 INSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYF---DQIIRKSGDFDYRKITT 116 + + T ++ + + ++ ++E + +SGD D K Sbjct: 6 LGQKEGEKMTEATWEQKFLRYLIVERGYSEKTKEAYEEDILHFKHFLEESGDADLLKAEY 65 Query: 117 KHIRSGVESRK-----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 +R + + ++ +S + + S+R +++ +++E + NP V K+ Sbjct: 66 FTVRVYLSALADHRPSYSRNSISRKIASLRSFYQYLLKEEVIKENPFSYVHLKKKNLRLP 125 Query: 172 RPWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KT 226 R + + +MQ + R E L SG+R S+ V + + + Sbjct: 126 RFFYENEMQALFDSVAGDSPLDLRNRALLEVLYGSGIRLSECSNLLVSDIDFDSEVMLIH 185 Query: 227 QKTGTIITVELPDGFMKLLA------------MTPIGKETFFINNDKQKMNATQFSIWFK 274 K L L + F+N+ + + T Sbjct: 186 GKGNKERYAPLGSFAQDALQEYFTEGRQVLMTKYHEEHDIVFVNHHGKPITPTGIEYVLN 245 Query: 275 AKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 K+ ++ H +R AT + GA + G + + Y Sbjct: 246 QIIKKSSLDSDIHPHMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHV 298 >gi|168495175|ref|YP_001686913.1| integrase [Azospirillum phage Cd] gi|168148934|emb|CAO99398.1| integrase [Azospirillum phage Cd] Length = 295 Score = 133 bits (334), Expect = 5e-29, Method: Composition-based stats. Identities = 74/286 (25%), Positives = 135/286 (47%), Gaps = 11/286 (3%) Query: 62 NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121 + TL W+I YR S + LA ++ +E+ FD++ ++ + +HI Sbjct: 2 KRGKYGHGTLGWVIGRYRLSPEYQRLAPATKKIYEAAFDRLHDY-AQEEFSGLRRRHIMR 60 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + H+P++A Q +T++ + ++A+ +E + +P S P+ KT R WT ++ + Sbjct: 61 VRDDLAHSPATANQVITAIGAVCRFALDREMIETDP--SHRVPRLKTGEWRRWTDAELDK 118 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 F E R F L++G R +D CRA +Q+ ++ QKTG + + L Sbjct: 119 FYQSAYEAL--RRVFVMALFTGQRRADLCRATWGDIQDGGINVVQQKTGAHLWIPLHPTL 176 Query: 242 MKLLAMTPIGKETFF-----INNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSAT 295 + LA+ + D+ S F+ +A K G+N + HG+RK +A Sbjct: 177 ERHLAIWKSDATPLPSVTILTSTDRTPWPPQVLSCAFRNEADKLGLNGCNLHGLRKTAAA 236 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 A+AG +A ++MA G T+++ E YT+ A++ RL + Sbjct: 237 KLAEAGCSARQIMAITGHSTMNEVERYTRQAEQRRLASDAIGAFDA 282 >gi|163857876|ref|YP_001632174.1| site-specific tyrosine recombinase XerD [Bordetella petrii DSM 12804] gi|163261604|emb|CAP43906.1| integrase/recombinase [Bordetella petrii] Length = 310 Score = 132 bits (333), Expect = 5e-29, Method: Composition-based stats. Identities = 52/307 (16%), Positives = 93/307 (30%), Gaps = 35/307 (11%) Query: 62 NSPRKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGD----------FD 110 P + I + + LA N+ ++ R Sbjct: 4 ADPLASQADIDAFIDAVWLED----GLAANTLAAYRRDLSAFARWLETPAEHGGAATASL 59 Query: 111 YRKITTKHIRSGVESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168 R T I + +R ++A + L ++R + WA+R+ +PCL++ K+ Sbjct: 60 LRDAGTGDIEAWFAARHADSRATTANRRLAALRRFYAWALREHRTGHDPCLTLSAAKQPP 119 Query: 169 EGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 + ++ + + + R E L +GLR S+ V + N + Sbjct: 120 RMPKTLSEAQVDALLRAPDLNTARGLRDRAMLETLYATGLRVSELVNIKVLEVSLNEGVV 179 Query: 225 K--TQKTGTIITVELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIW 272 + K G V L + F+ Q M F Sbjct: 180 RVVMGKGGKDRLVPLGAEAAHWIDRYLKEARPDLAGARVSDALFLTARAQPMTRQAFWQL 239 Query: 273 FKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 K A +GV S H +R AT + GA + G + + YT A Sbjct: 240 IKKYAVVSGVRAPLSPHVLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERL 299 Query: 331 LGIKNSR 337 + + Sbjct: 300 KALHAAH 306 >gi|304311873|ref|YP_003811471.1| Phage integrase/ Tyrosine recombinase XerD [gamma proteobacterium HdN1] gi|301797606|emb|CBL45827.1| Phage integrase/ Tyrosine recombinase XerD [gamma proteobacterium HdN1] Length = 316 Score = 132 bits (333), Expect = 5e-29, Method: Composition-based stats. Identities = 48/284 (16%), Positives = 99/284 (34%), Gaps = 28/284 (9%) Query: 71 LKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRK 127 + + + + L+ + ++ +Q R + ++ ++ +++R Sbjct: 27 ISAWLDAVWLE----KGLSSRTLEAYRQDLEQWCRWCSEQAVLLEQVDADTVQRYLQARA 82 Query: 128 HTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 S + L+ +R F + VR + +P VE PK R ++ D+ + Sbjct: 83 QHGTHSRSLARMLSCLRGFFAYQVRAGALTQDPTALVEAPKSGRPLPRSISEADVSALLA 142 Query: 185 FWSEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------- 232 + + R E L +GLR S+ + + ++ G+ Sbjct: 143 APNLEDPLELRDRAMLEVLYATGLRVSELIGLRLAQINRRQGVVRVMGKGSKERLVPLGE 202 Query: 233 ---ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287 +E + L ++ + F +M F K A +AG+ + S H Sbjct: 203 EALFWLERYFLQARALLLSSSDDDIVFPGRRGTEMTRQAFWYRIKYHAQQAGLRVHLSPH 262 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +R AT + GA + G + + YT A R+RL Sbjct: 263 TLRHAFATHLINHGADLRVVQMLLGHSDLSTTQIYTHVA-RLRL 305 >gi|254446539|ref|ZP_05060015.1| tyrosine recombinase XerD [Verrucomicrobiae bacterium DG1235] gi|198260847|gb|EDY85155.1| tyrosine recombinase XerD [Verrucomicrobiae bacterium DG1235] Length = 309 Score = 132 bits (333), Expect = 5e-29, Method: Composition-based stats. Identities = 44/286 (15%), Positives = 99/286 (34%), Gaps = 26/286 (9%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRK-- 127 + ++ L+ N+ +++S Q + ++K+T H+ + + Sbjct: 9 VDDFLAYLTLEKGLSDNTIENYQSDLSQFLAHVEKSSRVGSWKKLTASHVSDWIYALSEG 68 Query: 128 -HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 ++ +S + L+S+R L + +R+ + + V PK + + + +++++ S Sbjct: 69 DYSNASLCRKLSSLRSLDAYLMRERKIDKSFTEIVVGPKLRRKAPFTLSIQEVERLLSAP 128 Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 G + R E SGLR S+ +Q + + ++K + Sbjct: 129 DLTTAQGLRDRAMLELFYSSGLRVSELSGLMLQQIDLELGALKIYGKGSKERVCPMGRKA 188 Query: 242 MKLLAMTPIGKETFFINNDK----------QKMNATQFSIWFKAKATKAGVNK--SAHGV 289 + F+ + ++ + + AG++K H + Sbjct: 189 ATAIGDYLRNGRPRFVKSKTGSAVFLSARGTAISRKTIWVLVRKYTKAAGIDKPVKPHML 248 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIK 334 R AT GA + G + + YT ADR R Sbjct: 249 RHSFATHLLTGGADLRIIQELLGHADIATTQIYTSVEADRTRSAHD 294 >gi|149194285|ref|ZP_01871382.1| Phage integrase [Caminibacter mediatlanticus TB-2] gi|149135460|gb|EDM23939.1| Phage integrase [Caminibacter mediatlanticus TB-2] Length = 275 Score = 132 bits (333), Expect = 5e-29, Method: Composition-based stats. Identities = 40/261 (15%), Positives = 93/261 (35%), Gaps = 19/261 (7%) Query: 74 LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132 + + + ++ N+ +++ Q + + D + + + + + S Sbjct: 4 YLEAFLEYLLINKGVSKNTYEAYKRDLVQFEKFI-EKDIIDVDSNDVIRFLSQIDNK-RS 61 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-- 190 + L+++ F +A ++ YV +++ K + +KE++ S S Sbjct: 62 LNRKLSAINSFFDFAYKRNYVDEKF--KIKQAKLPKSLPKYLSKEEILTPISHIDSNSSW 119 Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD----GFMK 243 + + FL +GLR S++ + +++ ++ K V + D + Sbjct: 120 FELRDKALILFLYATGLRISEALNIKLSDIEDGWVRVEMAKGEKQRLVPIADVALKAIEE 179 Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGAT 303 LA P E F+N + K++ K S H +R AT A Sbjct: 180 YLAKRPCRSEYLFVNKNCNKLSRISAFNITKKYLA-----VSPHVLRHSFATSLVLGNAD 234 Query: 304 AHELMATYGWKTVDQAETYTK 324 + G +++ + YT Sbjct: 235 LRVVQELLGHASLNTTQIYTH 255 >gi|168215898|ref|ZP_02641523.1| phage integrase [Clostridium perfringens NCTC 8239] gi|182382275|gb|EDT79754.1| phage integrase [Clostridium perfringens NCTC 8239] Length = 400 Score = 132 bits (333), Expect = 5e-29, Method: Composition-based stats. Identities = 53/379 (13%), Positives = 97/379 (25%), Gaps = 55/379 (14%) Query: 14 ERTRHGKIIYYFRKG---HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 + +GK G +G R + ++ + P T Sbjct: 20 YKMSNGKFRGQLTIGYNENGTPKRKSFTGKTK--KEVSDKMKDFYVDNNRGLLPTDDKIT 77 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESR-- 126 L + + L +S +E + I G + T HI++ S Sbjct: 78 LSKWFYTWLFTYRIHDLKPSSFERYEGLYRNYIESSSIGKIKLMDLRTHHIQAYYNSLVS 137 Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED--MQQF 182 + +PS+ ++ A+++ Y+ N C + PK QQ Sbjct: 138 EERKSPSTIKTINKCLKSCLNQALKEGYITKNYCTLITLPKGSESPKEIINIFTLEEQQT 197 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------- 232 ++ + + L +GLR + + I K Sbjct: 198 FMKECMNNKNGMLYILALGTGLRLGEILALKWTDINFKNNYIDINKAIKSTYKIDSKGNR 257 Query: 233 ---------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT---------- 267 TV L D ++LL + +N + + Sbjct: 258 EFQIIEQQPKTKNSIRTVPLNDNLIELLQQHRKKQMIDRDSNIEIYFDNNLVFSTPIGNY 317 Query: 268 ----QFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ET 321 FK K + H +R AT + G + G + Sbjct: 318 LNESNVRKTFKRILNKCNLKELRFHDLRHTFATRLFENGVPPKTVQTILGHSDISTTLNI 377 Query: 322 YTKGA-DRIRLGIKNSRRI 339 YT D I + Sbjct: 378 YTHVMKDTKDKAIDKLNFL 396 >gi|319892267|ref|YP_004149142.1| Site-specific tyrosine recombinase [Staphylococcus pseudintermedius HKU10-03] gi|317161963|gb|ADV05506.1| Site-specific tyrosine recombinase [Staphylococcus pseudintermedius HKU10-03] Length = 303 Score = 132 bits (333), Expect = 5e-29, Method: Composition-based stats. Identities = 35/280 (12%), Positives = 86/280 (30%), Gaps = 21/280 (7%) Query: 71 LKWLISEYRKSAHWGSL-AVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVE 124 LK + ++ + ++ ++ Q R I ++ + Sbjct: 8 LKQIQEQFLDMLKRERFFSDHTLKAYHDDLVQFNRFLAQEQLSLTAFKYIDARNYLQTLY 67 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----Q 180 ++ + ++++R + + + Q++ +NP + + PK++ + E+M Q Sbjct: 68 DLGLQRTTVSRKISTLRSFYAFWMTQDHEIVNPFVQLVHPKKERYLPTFFYTEEMEALFQ 127 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD 239 +G + R+ E +G+R S+ + + + K G V + Sbjct: 128 TVMQDAHKGLRDRVILELFYATGIRVSELVSLKTEDVDLEMCWIKVLGKGGKERIVPFGE 187 Query: 240 GFMKLLAMTPIGKETFFINNDKQ--------KMNATQFSIWFKAKATK-AGVN-KSAHGV 289 + + + + AGV H + Sbjct: 188 FCRQSIEQYLAEFAPIQNVQHPYLITNLKGQPITERGVRYVLNDIVKRTAGVTSIHPHKL 247 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + GA + + G + YT ++ Sbjct: 248 RHTFATHLLNEGADLRTVQSLLGHVNLSTTGRYTHVTNQQ 287 >gi|319792815|ref|YP_004154455.1| tyrosine recombinase xerd [Variovorax paradoxus EPS] gi|315595278|gb|ADU36344.1| tyrosine recombinase XerD [Variovorax paradoxus EPS] Length = 303 Score = 132 bits (333), Expect = 5e-29, Method: Composition-based stats. Identities = 46/286 (16%), Positives = 93/286 (32%), Gaps = 30/286 (10%) Query: 71 LKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVES 125 + I + + L+ N+ ++ + G +++ + Sbjct: 12 IDEFIDALWLED----GLSKNTLAAYRRDLALFSQWLGKQRSGIALDTAQESDVQAYMGV 67 Query: 126 R---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 R K +SA + LT + ++WA+R+ + +P + + ++ I+ +++ + Sbjct: 68 RLSTKGKATSANRRLTVFKRYYRWALRERRITADPTIRLAPARQMPRAIKTLSEKQVDDL 127 Query: 183 KSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAG-VQHLQNNIFSIKTQKTGTIITVEL 237 + G + R E + SGLR S+ + N+ K V Sbjct: 128 LAAPDVETPLGLRDRAMLEVMYASGLRVSELVALKVIDMSLNDGVLRVLGKGNKERLVPF 187 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQK----------MNATQFSIWFKAKATKAGV--NKS 285 + + ++ + M F I K +A AG+ S Sbjct: 188 GGEARRWIERYLEESRPVILDGQQTPDLFVTARGAGMTRVMFWIIVKKQAAAAGIHVPLS 247 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 H +R AT + G + G + YT A R RL Sbjct: 248 PHTLRHAFATHLLNHGVDLRAVQLLLGHADISTTTIYTHVA-RERL 292 >gi|54298066|ref|YP_124435.1| hypothetical protein lpp2123 [Legionella pneumophila str. Paris] gi|53751851|emb|CAH13275.1| hypothetical protein lpp2123 [Legionella pneumophila str. Paris] Length = 353 Score = 132 bits (333), Expect = 5e-29, Method: Composition-based stats. Identities = 55/335 (16%), Positives = 116/335 (34%), Gaps = 20/335 (5%) Query: 11 VTKERTRHGKIIYYFRKG-HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 + K ++ GKI Y + G + T ++ + + + + K Sbjct: 4 IEKRTSKEGKISYRVKIRLKGFPTQHATFERLTDARKWVQQTESAIREGRHFKTTEAKRR 63 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--- 126 TL +I Y K + + + + + G + +++ I + Sbjct: 64 TLGEMIDRYIKDVIQE--KPKNLKNRVLHLNWWKEELGQYSLAELSPAMIAEKRDKLSAG 121 Query: 127 ------KHTPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDM 179 K +PS+ ++++ S+ F AV++ ++ +P V +PK +R + ++ Sbjct: 122 ITSRNLKRSPSTVVRYMASLSHAFTIAVKEWGWLEDSPMRRVTKPKEPRGRVRFLSDDER 181 Query: 180 QQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237 + S + L A L +G R + +++ N I +T L Sbjct: 182 ARLLSECKKSDSQYLYLAVVLALSTGGRKMEILGLSWKNVDFNRSIITLHETKNGERRVL 241 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQK----MNATQFSIWFKAKATKAGV-NKSAHGVRKF 292 P L M K ++ F+ +AG+ + H +R Sbjct: 242 PLTGHALDLMKQHAKVRHVNSDLVFPGKDFKTPIDLRTPFETALKRAGITDFRWHDLRHS 301 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 A+ A GA+ E+ G KT+ + Y ++ Sbjct: 302 CASYLAMNGASLAEIAEILGHKTLQMVKRYAHLSE 336 >gi|33151294|ref|NP_872647.1| site-specific tyrosine recombinase XerD [Haemophilus ducreyi 35000HP] gi|71153413|sp|Q7VPN8|XERD_HAEDU RecName: Full=Tyrosine recombinase xerD gi|33147514|gb|AAP95036.1| integrase/recombinase XerD [Haemophilus ducreyi 35000HP] Length = 297 Score = 132 bits (333), Expect = 5e-29, Method: Composition-based stats. Identities = 38/282 (13%), Positives = 98/282 (34%), Gaps = 23/282 (8%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVES 125 L +I ++ + SL+ N+ +S+ + + Sbjct: 4 LDPIIEQFLDTLWLEQSLSHNTLLSYRLDLELFSAWLVEPRAFLTLTHTDLQLFLGDRLD 63 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + + SS+ + ++ +R F++ ++Y +P + P+++ + + ++E + Sbjct: 64 KGYKSSSSARIISCLRKFFRFLCLEKYRLDDPTSMLISPRKRVQLPKSLSEEQVMDLLDA 123 Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-----------TQKTG 230 + + + E L +GLR ++ + +L ++ Sbjct: 124 PNPLDPIELRDKAMLELLYATGLRVTELISLTIDNLNLRQGVVRVIGKGDKERLVPIGEE 183 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287 ++ + +++ ++ + F + ++M F K A AG++ S H Sbjct: 184 ASYWIQEFFDYGRMILLSDQQSDVLFPSRRAKQMTRQTFWHRIKYYAILAGIDAEKLSPH 243 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R AT + GA + G + + YT A Sbjct: 244 VLRHAFATHLINHGADLRVVQMLLGHSDLSTTQIYTHVAKTR 285 >gi|32474160|ref|NP_867154.1| integrase/recombinase [Rhodopirellula baltica SH 1] gi|32444697|emb|CAD74699.1| integrase/recombinase [Rhodopirellula baltica SH 1] Length = 325 Score = 132 bits (333), Expect = 5e-29, Method: Composition-based stats. Identities = 42/276 (15%), Positives = 90/276 (32%), Gaps = 23/276 (8%) Query: 73 WLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--- 128 + E+ LA N+ ++ + + +T + V S Sbjct: 34 AVCDEFLVYLKRECHLADNTVAAYGRDMKRFVTWMDGRRPADLTITELSDFVASLHGEGL 93 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 P+S + + ++R FK+ + NP + K + +++ F S + Sbjct: 94 APASISRAIVAIRTFFKYLQLEGITVDNPAELLATQKAWQRMPGVLSPNEVEAFLSAVKK 153 Query: 189 GS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243 + R E L +G R S+ C V+ L + +++ V + ++ Sbjct: 154 SDSFWQRDRALLEVLYATGCRASEVCTLRVRDLTLDEKTLRCHGKGDKQRMVPIGGRAIR 213 Query: 244 LLAMTPIGKETFFINNDKQKMN------------ATQFSIWFKAKATKAGV--NKSAHGV 289 + + + + +++ Q K A +AG+ S H + Sbjct: 214 AIQLYLEESRHILADRNPGQIDELFLSRGGKALDRIQLWRLVKRYAKRAGISDEISPHSL 273 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 R AT GA ++ G ++ + YT Sbjct: 274 RHSFATHLLAGGADLRQVQEMLGHASIQTTQIYTHV 309 >gi|257898367|ref|ZP_05678020.1| phage integrase [Enterococcus faecium Com15] gi|257836279|gb|EEV61353.1| phage integrase [Enterococcus faecium Com15] Length = 378 Score = 132 bits (333), Expect = 5e-29, Method: Composition-based stats. Identities = 44/359 (12%), Positives = 103/359 (28%), Gaps = 43/359 (11%) Query: 15 RTRHGKIIYYFRK--GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 R R + YYF G R ++ T A + + E T +K Sbjct: 6 RKRGKRWYYYFEDINDDGSRKKVEKVGGDTRPEAEAALRKVLSDIDETGQYFLGTDTRVK 65 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 + + K +L N+ ++ I G ++ +++ + + Sbjct: 66 QYLDFWMKEYVKLNLKYNTYENYRFTIKNHINGYLGKKKLTDLSPALLQNFINAEFKKGY 125 Query: 132 SAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI------RPWTKEDMQQF 182 S + ++ AV + + + + E + + ED Sbjct: 126 SKKTMTITHSVLKNALNMAVYPWGLIKQNPMLYVKIPKYEERPTTKKDLKIISLEDFDHM 185 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----------------IFSIKT 226 EG + Y+G+R + C ++ + Sbjct: 186 LEITPEGHPFYIPLNIGFYTGMRVGEVCGLTWDNVDFSNGTITVEKQMVKNDGAWVYGTP 245 Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--------------NATQFSIW 272 + + + T+ + + +L + + K + + Sbjct: 246 KTSSSNRTIFIGQTLLAILKKHKKQQLENRMKYGKLYIDSNAVCTKEDGGLVTPSVVKWN 305 Query: 273 FKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330 + + ++ + H +R AT+ + GA E+ G + TY+ D++R Sbjct: 306 TRRISNALSLSFNFHSLRHTHATLLLENGAKMKEISERLGHSRISITMDTYSHVTDKMR 364 >gi|42519036|ref|NP_964966.1| integrase/recombinase CodV [Lactobacillus johnsonii NCC 533] gi|41583323|gb|AAS08932.1| probable integrase/recombinase CodV [Lactobacillus johnsonii NCC 533] Length = 307 Score = 132 bits (333), Expect = 5e-29, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 104/302 (34%), Gaps = 27/302 (8%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-------GDFDYRKITTKHIRSGV 123 LI +++ ++ + + N+ S+ + ++ G + + + Sbjct: 6 DKLIKQFQDYLNYERNYSKNTVNSYLNDLNEAKEFFKENGGFSGWDQVKSRDVEIFLQNL 65 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 ++ + ++ + ++S+R +++ V++E + +P ++ + + + + +++M+Q Sbjct: 66 ATQNRSRTTQARKMSSLRSFYRFLVKREVLDNDPMQTISLRLGEKKLPQFFYEKEMRQVF 125 Query: 184 S----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238 + R FE +G+R S+ + + ++ I K V Sbjct: 126 DSLAGHEKLVVRNRAMFELFYATGMRLSEMASLKLDQIDFDLKIILVHGKGNKDRYVPFG 185 Query: 239 DGFMKLLAMTPI-----------GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285 L + F+NN QK+ + KAGV Sbjct: 186 KDAANALKEYCDEGRPALLGKNEDRGYVFLNNRGQKLTGRGIEYIMQQVFIKAGVGGKVH 245 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345 H +R AT + GA + G +++ + YT L + Sbjct: 246 PHMLRHSFATEMLNNGADLRSVQELLGHESLSTTQIYTHVT-MKHLQADYQKFFPRKDKK 304 Query: 346 DD 347 D+ Sbjct: 305 DE 306 >gi|238022334|ref|ZP_04602760.1| hypothetical protein GCWU000324_02241 [Kingella oralis ATCC 51147] gi|237866948|gb|EEP67990.1| hypothetical protein GCWU000324_02241 [Kingella oralis ATCC 51147] Length = 300 Score = 132 bits (333), Expect = 5e-29, Method: Composition-based stats. Identities = 39/262 (14%), Positives = 87/262 (33%), Gaps = 18/262 (6%) Query: 86 SLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL 143 L+ N+ ++ +I + + + + + + P S + L++ + L Sbjct: 25 RLSQNTLDAYRRDLTKIATRLANEHSSLKTTDAVQLAAAIYVAQEQPRSQARALSACKRL 84 Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFEFL 199 + W + NPC + K+ T++ + + G + + E + Sbjct: 85 YAWLEETGQRSDNPCRDLRTAKQARTLPPIITEQHITDLLNAPDTETPHGLRDKALLELI 144 Query: 200 LYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG------- 251 +GLR S++ + + + K V + + + L Sbjct: 145 YATGLRVSEAVGLQLNEINLQSGMVNTIGKGDKQRIVPMGEEAVYWLEHYLQHARPALLK 204 Query: 252 ---KETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHEL 307 E F++ K ++ + A +AG+ S H +R AT + GA + Sbjct: 205 NARCEAVFVSQKKTGISRQLAWMAVSRYAEQAGMPHISPHDLRHAFATHLVNHGADLRVV 264 Query: 308 MATYGWKTVDQAETYTKGADRI 329 G + + YT A+ Sbjct: 265 QTLLGHADIATTQIYTHVANER 286 >gi|113866617|ref|YP_725106.1| site-specific tyrosine recombinase XerD [Ralstonia eutropha H16] gi|113525393|emb|CAJ91738.1| Site-specific recombinase XerD [Ralstonia eutropha H16] Length = 312 Score = 132 bits (333), Expect = 5e-29, Method: Composition-based stats. Identities = 52/269 (19%), Positives = 84/269 (31%), Gaps = 24/269 (8%) Query: 86 SLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140 L+ N+ ++ + R G+ + SSA + L Sbjct: 34 GLSRNTIDAYRRDLTLLARWLQHEHRGELPGADDGALSAYFNARHTQSRASSANRRLAVF 93 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAF 196 R ++WA+R+ V +PCL + K+ + T+ + G + R Sbjct: 94 RRFYQWALREHLVEADPCLLLRPAKQPPRYPKTLTESQVDALLEAPDTDTPLGLRDRTML 153 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPDGFMKLLAMT------ 248 E + SGLR S+ + + N + K V L Sbjct: 154 ELMYASGLRVSELTQMKTIEIGLNEGVARVVGGKGDKERLVPFGQQAGDWLRRYLASARP 213 Query: 249 ----PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302 + F+ + M F K A AGV S H +R AT + GA Sbjct: 214 ALLAGRACDALFVTQRGEGMTRQAFWHLIKRHARDAGVHAPLSPHTLRHAFATHLLNHGA 273 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRL 331 + G + + YT A R RL Sbjct: 274 DLRVVQLLLGHADISTTQIYTHVA-RERL 301 >gi|126737207|ref|ZP_01752942.1| tyrosine recombinase [Roseobacter sp. SK209-2-6] gi|126721792|gb|EBA18495.1| tyrosine recombinase [Roseobacter sp. SK209-2-6] Length = 328 Score = 132 bits (333), Expect = 5e-29, Method: Composition-based stats. Identities = 39/290 (13%), Positives = 81/290 (27%), Gaps = 29/290 (10%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSG 122 + + + + N+ +++ + G I T +R+ Sbjct: 31 RDALENWLLGLTALSGASENTITAYQGDLTSFLGFMTLHRGSPQGLKALADIKTADMRAW 90 Query: 123 VESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + + + P S + L++++ ++W +E L+ PK + + RP +E Sbjct: 91 MAQERGSGTGPRSLARRLSAVKSFYRWLAEREGFEPTAVLAARAPKFQKKLPRPLAEEAA 150 Query: 180 QQFKSF-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 + G++ L GLR S++ K G Sbjct: 151 KAVLERVEQQSETDWIGARDLAVVTLLYGCGLRISEALGLKGGDAPLPASLRILGKGGKE 210 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKM-------NATQFSIWFKAKATKAGVNK- 284 V + D + N Q + G+ Sbjct: 211 RLVPVLDAARDAVDHYLALCPHSAEKETPLFRGVRGGALNPRQIQSTMAKVRAQLGLPAS 270 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 + H +R AT +AG + G ++ + Y D L Sbjct: 271 ATPHALRHSFATHLLEAGGDLRAIQELLGHASLSTTQAYA-AVDTAHLMA 319 >gi|227488616|ref|ZP_03918932.1| site-specific tyrosine recombinase XerC [Corynebacterium glucuronolyticum ATCC 51867] gi|227543219|ref|ZP_03973268.1| site-specific tyrosine recombinase XerC [Corynebacterium glucuronolyticum ATCC 51866] gi|227091510|gb|EEI26822.1| site-specific tyrosine recombinase XerC [Corynebacterium glucuronolyticum ATCC 51867] gi|227181028|gb|EEI62000.1| site-specific tyrosine recombinase XerC [Corynebacterium glucuronolyticum ATCC 51866] Length = 295 Score = 132 bits (333), Expect = 6e-29, Method: Composition-based stats. Identities = 38/280 (13%), Positives = 79/280 (28%), Gaps = 23/280 (8%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--- 126 LI +Y + + + + S T +R+ + Sbjct: 6 FHELIEDYCDHLRFNEGKSEATIRGYRSDLLLACEYLNG--VAGFTLTGLRAWLGEAVSA 63 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK--- 183 + ++ + ++R WA +Q Y+ + + P + T + + Sbjct: 64 GKSRATLARRTAAVRSFSAWAHKQGYLEEDAARRLRVPYKSHHLPTVLTSDQAGEMMGNA 123 Query: 184 --SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELPDG 240 E + E L +G+R ++ C V + T K V Sbjct: 124 GSHSEPEFLRDSAILELLYATGMRVAELCSLDVADVDGAKNTVKVTGKGNKQRVVPFGAP 183 Query: 241 FMKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVNK-SAHGV 289 L F +++ Q + A GV+ + H + Sbjct: 184 ARNALDQWISAGRGHFATADSGDALFLGVRGGRIDPRQVRRIVETAAANTGVDGITPHSL 243 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R +AT + GA + G ++ + YT + Sbjct: 244 RHTAATHLLEGGADLRAVQEFLGHSSLQTTQIYTHVSGER 283 >gi|189465186|ref|ZP_03013971.1| hypothetical protein BACINT_01531 [Bacteroides intestinalis DSM 17393] gi|189437460|gb|EDV06445.1| hypothetical protein BACINT_01531 [Bacteroides intestinalis DSM 17393] Length = 316 Score = 132 bits (333), Expect = 6e-29, Method: Composition-based stats. Identities = 53/293 (18%), Positives = 99/293 (33%), Gaps = 25/293 (8%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI-----TTKHIRSGVESRKHTP 130 +Y K L+ N+ ++ + ++++ + + + +G+ P Sbjct: 21 QQYLKLEKA--LSANTLDAYLTDLNKLLCFLKTENIDMLAVTLDDLQRFAAGLHDIGIHP 78 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFW 186 S + L+ ++ F + V +Y +P +E PK + T E++ Sbjct: 79 RSQARILSGIKSFFHFLVMADYREDDPSELLEGPKIGFKLPEVLTVEEIDTIISTVDMSK 138 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFMKLL 245 EG + R E L GLR S+ C + L + F K V + +K + Sbjct: 139 KEGQRNRAILETLYSCGLRVSELCNLKLSELYFDEGFIKVEGKGSKQRLVPISPRAIKEI 198 Query: 246 AMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293 ++ F+ ++ K A KAG+ K S H R Sbjct: 199 KYWLLDRNLGKIKKGFEDYVFLARWGNSISRIMVFHLIKELAEKAGITKNISPHTFRHSF 258 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346 AT + GA + G +++ E YT DR L + + Sbjct: 259 ATHLLEGGANLRAIQCMLGHESIATTEIYTH-IDRNMLRSEIIEHHPRNIKYR 310 >gi|147668730|ref|YP_001213548.1| phage integrase family protein [Dehalococcoides sp. BAV1] gi|146269678|gb|ABQ16670.1| phage integrase family protein [Dehalococcoides sp. BAV1] Length = 319 Score = 132 bits (333), Expect = 6e-29, Method: Composition-based stats. Identities = 39/282 (13%), Positives = 109/282 (38%), Gaps = 17/282 (6%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESRKHT-- 129 ++ + + L+ ++ + + + G +I H+R + + Sbjct: 32 LNAFVLTCKVARLSPHTIRYYTYALNSFLGYCQTLGINTVEEIEANHVRLYLVKLQERNN 91 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--- 186 P+S + + +++ F W + + ++ +P +++ P+ + + IRP+T++ ++ + Sbjct: 92 PTSVLDYYKAVKRFFNWLIEEGVLSKSPLATIKPPRTEQKIIRPFTRQQIEDLLATCGDS 151 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-----KTGTIITVELPDGF 241 G + + +L +GLR S+ ++ + + +I + I + + Sbjct: 152 PIGLRNKAMILTMLDTGLRVSEMSAIQLKDVDFDKETIIVMGKGAKQRVVRIGHKAQETI 211 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISA 298 ++ L +++ ++ + + +AG+ S H R AT + Sbjct: 212 LRYLLTRQDECPALWMSTTGSGLSTEGIKVVVRELGKRAGLTGVRCSPHTFRHTFATQAL 271 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 GA E+ + G T+ + YT ++ ++ S Sbjct: 272 INGAGEFEVQSLLGHSTLVMTKRYTASLKSEH-AVQEHKKFS 312 >gi|327479757|gb|AEA83067.1| site-specific tyrosine recombinase XerD [Pseudomonas stutzeri DSM 4166] Length = 298 Score = 132 bits (333), Expect = 6e-29, Method: Composition-based stats. Identities = 53/286 (18%), Positives = 101/286 (35%), Gaps = 25/286 (8%) Query: 70 TLKW-LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVES 125 TL +I Y + LA NSR ++ + + + I + Sbjct: 3 TLDDPVIDRYLDALWLEKGLADNSREAYRNDLASFNGWLQERGVRLAAAGREIILDHLAW 62 Query: 126 R---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 R + S +FL+ +R +++ +R+ ++++P L V+ P+ + ++ D++ Sbjct: 63 RLNNGYKARSTARFLSGLRGFYRYLLREGEISLDPTLRVDLPRLGRPLPKALSEADVEAL 122 Query: 183 KSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVEL 237 + G + R E L GLR ++ ++ + ++T V L Sbjct: 123 LAAPDTGDPLGLRDRAMLEVLYACGLRVTELISLTLEQVSMRQGVLRTFGKGNKERLVPL 182 Query: 238 PDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--NKS 285 + + L F + ++M F K A AG+ S Sbjct: 183 GEEALHWLQRYQRDARDQLLAGRPSDVLFPSQRGEQMTRQTFWHRIKLHARVAGIATGIS 242 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 H +R AT + GA + G + + YT A R RL Sbjct: 243 PHTLRHAFATHLLNHGADLRTVQMLLGHSDLSTTQIYTHIA-RARL 287 >gi|23099003|ref|NP_692469.1| site-specific tyrosine recombinase XerC [Oceanobacillus iheyensis HTE831] gi|34222801|sp|Q7ZAM5|XERC_OCEIH RecName: Full=Tyrosine recombinase xerC gi|22777231|dbj|BAC13504.1| integrase:recombinase [Oceanobacillus iheyensis HTE831] Length = 305 Score = 132 bits (333), Expect = 6e-29, Method: Composition-based stats. Identities = 46/282 (16%), Positives = 94/282 (33%), Gaps = 28/282 (9%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKH---TP 130 EY + + + + + + + G +T K +R + S + Sbjct: 13 EYLQIE--KNASPYTVKYYRNDLEIFADFLRSEGLSHIANVTYKDVRIFLTSLYEQELSR 70 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFW 186 S + ++++R +++ R+ YV NP + + PK +E+ + Sbjct: 71 RSVSRKISTLRSFYRFLEREGYVEGNPFVQLHLPKTSKPVPGFLYQEELDKLFEVNDITT 130 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVEL-------- 237 G + + E L +G+R S+ +Q + I K V Sbjct: 131 PLGQRDQALLEMLYGTGIRVSECQNLRLQDIDFAIGTIFVRGKGRKERYVPFGSFAEIAL 190 Query: 238 ----PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRK 291 +G KLL + E F+N+ + +A + + H +R Sbjct: 191 ETYLQEGRTKLLEKSNSDTEFIFLNSRGGHLTNRGIRTILNKIVERASLTVHVHPHKLRH 250 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLG 332 AT + GA + G +++ + YT D +R Sbjct: 251 TFATHLLNEGADLRSVQELLGHESLSSTQIYTHVTKDHLREA 292 >gi|312139850|ref|YP_004007186.1| tyrosine recombinase xerd [Rhodococcus equi 103S] gi|311889189|emb|CBH48503.1| tyrosine recombinase XerD [Rhodococcus equi 103S] Length = 309 Score = 132 bits (333), Expect = 6e-29, Method: Composition-based stats. Identities = 54/287 (18%), Positives = 93/287 (32%), Gaps = 34/287 (11%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESR 126 L LI Y A N+ S+ D+ + G D R +T + V + Sbjct: 4 LGGLIDSYLDHLAVERGAARNTLTSYRRDLDRYARFLEARGTDDIRSVTETDVSEFVVAL 63 Query: 127 KHT----------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + PSSA + L ++R L ++A + + + +V+ P + Sbjct: 64 RKGDPAEGVVALAPSSAARALIAVRGLHRFAAAEGVTSGDVARAVKPPTPGRRLPKSLPL 123 Query: 177 EDMQQFKSF--------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQ 227 +D+ + R E L +G R S++ V L S+ Sbjct: 124 DDVLAILEASGGDGSADNPRTLRDRALLELLYSTGARISEAVGLDVDDLDTQSRSVLLRG 183 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETF---------FINNDKQKMNATQFSIWFKAKAT 278 K G V + + + + F+N +++ A Sbjct: 184 KGGKERVVPVGRPAITAIDNYLVRGRPALSVRGGPALFLNVRGGRLSRQSAWQVLHTAAE 243 Query: 279 KAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 KAG+ S H +R AT D GA + G +V + YT Sbjct: 244 KAGIAVAVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYT 290 >gi|328948451|ref|YP_004365788.1| Tyrosine recombinase xerC [Treponema succinifaciens DSM 2489] gi|328448775|gb|AEB14491.1| Tyrosine recombinase xerC [Treponema succinifaciens DSM 2489] Length = 297 Score = 132 bits (333), Expect = 6e-29, Method: Composition-based stats. Identities = 46/293 (15%), Positives = 92/293 (31%), Gaps = 22/293 (7%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKH 128 K L+ E+ + + + ++ + + K+T + + RK Sbjct: 4 KSLLQEFYSELLFVENHGKLTAETYLICVQEFLDYLEKNETPLEKVTVQSLLYYTAFRKT 63 Query: 129 TPS---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-- 183 + + + L+++R+ + VR++ N + +PK + E + Sbjct: 64 SGRKEITLAKDLSALRIFGSFLVRKKIWIENFAHEIGKPKVSRALPKVLEVEQVDSLLAS 123 Query: 184 --SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDG 240 G + R +E + GLR S++C + ++ + I K V + Sbjct: 124 IDVKKPLGIRDRALYEVIYSCGLRISEACSLLIANVHFDENLILVRGKGSKERLVPFGED 183 Query: 241 FMKLLAMTPIGKET----------FFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVR 290 L F+N+ ++ FKA K G+ H +R Sbjct: 184 AAFWLKKWIFEIRPGFVGSRIIPEVFVNSKGNPISRKGIWKNFKAMGKKTGIEAKVHTLR 243 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343 AT GA + G + + YT D RL + Sbjct: 244 HSFATHLLSGGADLRSVQELLGHSDLSTTQIYTH-IDDSRLEESHRDFFPGHK 295 >gi|323697647|ref|ZP_08109559.1| integrase family protein [Desulfovibrio sp. ND132] gi|323457579|gb|EGB13444.1| integrase family protein [Desulfovibrio desulfuricans ND132] Length = 316 Score = 132 bits (333), Expect = 6e-29, Method: Composition-based stats. Identities = 42/286 (14%), Positives = 95/286 (33%), Gaps = 26/286 (9%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIR---SG 122 + + + + S+ + +Q ++ H+R + Sbjct: 12 GEFVRGFLAFLEVEKGYSPATIRSYGTDLEQFEEFLRGRKASLERPARLNRDHVRGFLAE 71 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + R+ T +S + L+S+R FK+ +R + + +P + PK++ + + Sbjct: 72 LHRRQMTKTSMGRKLSSLRAYFKYLLRHKVITKDPVAGIRNPKQEKHHPQVLNVDQAVSL 131 Query: 183 KSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------ 232 EG + E L SGLR S++ + + +++ + + + Sbjct: 132 MEARVEPDPEGLRDVALAEVLYGSGLRISEAIGLDLNDVDSDVIRVTGKGSKERIVPLSD 191 Query: 233 ----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286 L + F + ++++ Q + AG+ Sbjct: 192 AAVARIRRYLGQRHAFLKGNYAEQALFLSSRAGKRLDRRQANRIVARLGKLAGLPLDVHP 251 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R AT +AGA + G + + + YT D R+ Sbjct: 252 HTLRHSFATHMLEAGADLRSVQELLGHENLTTTQRYTH-LDMQRIM 296 >gi|146281579|ref|YP_001171732.1| site-specific tyrosine recombinase XerD [Pseudomonas stutzeri A1501] gi|145569784|gb|ABP78890.1| integrase/recombinase XerD [Pseudomonas stutzeri A1501] Length = 298 Score = 132 bits (333), Expect = 6e-29, Method: Composition-based stats. Identities = 53/286 (18%), Positives = 101/286 (35%), Gaps = 25/286 (8%) Query: 70 TLKW-LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVES 125 TL +I Y + LA NSR ++ + + + I + Sbjct: 3 TLDDPVIDRYLDALWLEKGLADNSREAYRNDLASFNGWLQERGVRLAAAGREVILDHLAW 62 Query: 126 R---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 R + S +FL+ +R +++ +R+ ++++P L V+ P+ + ++ D++ Sbjct: 63 RLNNGYKARSTARFLSGLRGFYRYLLREGEISLDPTLRVDLPRLGRPLPKALSEADVEAL 122 Query: 183 KSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVEL 237 + G + R E L GLR ++ ++ + ++T V L Sbjct: 123 LAAPDTGDPLGLRDRAMLEVLYACGLRVTELISLTLEQVSMRQGVLRTFGKGNKERLVPL 182 Query: 238 PDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--NKS 285 + + L F + ++M F K A AG+ S Sbjct: 183 GEEALHWLQRYQRDARDQLLAGRPSDVLFPSQRGEQMTRQTFWHRIKLHARGAGIATGIS 242 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 H +R AT + GA + G + + YT A R RL Sbjct: 243 PHTLRHAFATHLLNHGADLRTVQMLLGHSDLSTTQIYTHIA-RARL 287 >gi|189502574|ref|YP_001958291.1| hypothetical protein Aasi_1239 [Candidatus Amoebophilus asiaticus 5a2] gi|189498015|gb|ACE06562.1| hypothetical protein Aasi_1239 [Candidatus Amoebophilus asiaticus 5a2] Length = 299 Score = 132 bits (333), Expect = 6e-29, Method: Composition-based stats. Identities = 54/282 (19%), Positives = 97/282 (34%), Gaps = 26/282 (9%) Query: 69 TTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRK-----SGDFDYRKITT--KHIR 120 T + I ++ SLA NS +++ S ++ + G TT + Sbjct: 1 MTWELAIQQFEIHLQLERSLAENSILAYGSDLRKLCQFIELRQLGLSPLTLQTTHLRDFL 60 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED-- 178 + +S + L+++R +++ + + Y+ +P VERP + + + Sbjct: 61 MYLYELGIGATSQARILSAIRGFYQFLLLEGYLETDPTKLVERPVLGRKLPHTLSVHEIE 120 Query: 179 --MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITV 235 + G + R E L SGLR S+ + + K V Sbjct: 121 ILFGTIDHSTAMGMRNRAMLETLYSSGLRVSELISLRMSDIYFEEMFLQVLGKGNKQRLV 180 Query: 236 ELPDGFMKLLAMTPIGKETFFI-----------NNDKQKMNATQFSIWFKAKATKAGV-- 282 + +K L + F N KM+ + K A+KAG+ Sbjct: 181 PIGKIALKYLRIYIEEVRIHFPIKKEAANCVFLNKRGSKMSRVMVFLIIKELASKAGLQQ 240 Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 S H R AT + GA + A G +++ E YT Sbjct: 241 EISPHTFRHSFATHLVEGGADLRAVQAMLGHESITTTEIYTH 282 >gi|90580583|ref|ZP_01236388.1| tyrosine recombinase [Vibrio angustum S14] gi|90438241|gb|EAS63427.1| tyrosine recombinase [Photobacterium angustum S14] Length = 298 Score = 132 bits (333), Expect = 6e-29, Method: Composition-based stats. Identities = 37/280 (13%), Positives = 95/280 (33%), Gaps = 24/280 (8%) Query: 74 LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESR---K 127 +I + + L+ N+ S+ + +++R + ++ ++ + Sbjct: 7 IIERFLDAMWMERGLSENTLSSYRNDLTKLLRWLKQESRNVISVSVDDLQRYQQWLFDKD 66 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + +S + ++++R LF++ R++ +P + PK + ++ + Sbjct: 67 YKQTSRARMVSAIRRLFQYLHREKMRDDDPSAMLVTPKLPKRLPKDLSEAQVDALLEAPD 126 Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 + + E L +GLR ++ ++++ ++ V + + + Sbjct: 127 VNDPIELRDKAMLELLYATGLRVTELVTLTMENISLRQGVVRITGKGDKERLVPMGENAV 186 Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289 + F + ++M F K A AG++ S H + Sbjct: 187 DWIEQFIETGRPQLLGEKSSDVLFPSRRARQMTRQTFWHRIKHYAVLAGIDADTLSPHVM 246 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + GA + G + + YT A Sbjct: 247 RHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER 286 >gi|158320082|ref|YP_001512589.1| integrase family protein [Alkaliphilus oremlandii OhILAs] gi|158140281|gb|ABW18593.1| integrase family protein [Alkaliphilus oremlandii OhILAs] Length = 369 Score = 132 bits (333), Expect = 6e-29, Method: Composition-based stats. Identities = 40/363 (11%), Positives = 104/363 (28%), Gaps = 44/363 (12%) Query: 15 RTRHGKIIYYFR----KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 ++ K G +R + + + + ++++ T Sbjct: 6 VKKNHKWYIVVDSIDENGKRKRKWISGFNTQKEAEKKLPEILQQLNTNTFVDT---NNIT 62 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT- 129 L+ + + + ++A + + +++ G+ ++I HI+ V ++ Sbjct: 63 LRDYMQLWLEDYAKPNVAPTTYDKYTYAANKVSEILGNMKLQQIKPIHIQQLVNKLNNSD 122 Query: 130 --PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 PS+ + + + AV+ +++ NPC++V P+ + ++++Q S Sbjct: 123 VTPSTVLSYYRVLNTAINQAVKWQFIQYNPCVAVTPPRNTKNKMMILDQDEIQILLDK-S 181 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK---------------------- 225 + L GLR + +++ I Sbjct: 182 KDHVLYPVIVLALLCGLRRGEILGLQWENIDFFSGVIHLENNLVMANNESILKETKTSTG 241 Query: 226 --------TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277 + + L + D + F Sbjct: 242 RRAVDISSNVVEVLKKVKKQKMSYKLLYGSSYHDSNFVCTWEDGRPFRPDYIPKAFAKIL 301 Query: 278 TKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA-DRIRLGIK 334 A + K H +R A+I +G + G ++ +TY+ + + Sbjct: 302 VSANLPKIRFHDLRHTHASILLKSGIHPKVVQERLGHSSISITLDTYSHLVPSLQKSAAE 361 Query: 335 NSR 337 Sbjct: 362 KMA 364 >gi|325674273|ref|ZP_08153962.1| integrase/recombinase XerD [Rhodococcus equi ATCC 33707] gi|325554953|gb|EGD24626.1| integrase/recombinase XerD [Rhodococcus equi ATCC 33707] Length = 309 Score = 132 bits (333), Expect = 6e-29, Method: Composition-based stats. Identities = 54/287 (18%), Positives = 93/287 (32%), Gaps = 34/287 (11%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESR 126 L LI Y A N+ S+ D+ + G D R +T + V + Sbjct: 4 LGGLIDSYLDHLAVERGAARNTLTSYRRDLDRYARFLEARGTDDVRSVTETDVSEFVVAL 63 Query: 127 KHT----------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + PSSA + L ++R L ++A + + + +V+ P + Sbjct: 64 RKGDPAEGVVALAPSSAARALIAVRGLHRFAAAEGVTSGDVARAVKPPTPGRRLPKSLPL 123 Query: 177 EDMQQFKSF--------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQ 227 +D+ + R E L +G R S++ V L S+ Sbjct: 124 DDVLAILEASGGDGSADNPRTLRDRALLELLYSTGARISEAVGLDVDDLDTQSRSVLLRG 183 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETF---------FINNDKQKMNATQFSIWFKAKAT 278 K G V + + + + F+N +++ A Sbjct: 184 KGGKERVVPVGRPAITAIDNYLVRGRPALSVRGGPALFLNVRGGRLSRQSAWQVLHTAAE 243 Query: 279 KAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 KAG+ S H +R AT D GA + G +V + YT Sbjct: 244 KAGIAVAVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYT 290 >gi|284044544|ref|YP_003394884.1| tyrosine recombinase XerD [Conexibacter woesei DSM 14684] gi|283948765|gb|ADB51509.1| tyrosine recombinase XerD [Conexibacter woesei DSM 14684] Length = 320 Score = 132 bits (333), Expect = 6e-29, Method: Composition-based stats. Identities = 41/293 (13%), Positives = 94/293 (32%), Gaps = 29/293 (9%) Query: 67 KPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGV 123 + + + L+ ++ L+ N+ ++ S Q D ++ + + V Sbjct: 11 RTGSFEDLVLDFIAYLELERGLSRNTLEAYRSDLLQYGAYLDRAGKDALRVEHGDLAAFV 70 Query: 124 ESRKHTP--------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 + ++ + + +R ++ R+E + +P ++ P R + + + Sbjct: 71 GALAAGGDGRAPAAATTVQRKVACLRSFYRHLRREEILDRDPTAELKGPPRGKKLPKVLS 130 Query: 176 KEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-G 230 ++++Q S + R E + GLR S++ + L + ++ Sbjct: 131 RDEVQHLLSQPRGTGPAALRDRALLELMYACGLRASEAVDMQLDELDVDDGILRANGKGN 190 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKA 280 V + + L + N + + A A Sbjct: 191 KERLVPIGSKALDALRHYLTRGRPQMVGLREEKRVFVNQRGHGLTRQGLYKIVQRHARTA 250 Query: 281 GV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330 G+ S H +R AT G L G + + YT A+R+R Sbjct: 251 GLGDKMSPHTLRHTFATHLLAGGCDLRSLQEMLGHADIATTQIYTHLSAERLR 303 >gi|118479053|ref|YP_896204.1| site-specific tyrosine recombinase XerC [Bacillus thuringiensis str. Al Hakam] gi|228986974|ref|ZP_04147100.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|118418278|gb|ABK86697.1| tyrosine recombinase XerC subunit [Bacillus thuringiensis str. Al Hakam] gi|228772752|gb|EEM21192.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 302 Score = 132 bits (333), Expect = 6e-29, Method: Composition-based stats. Identities = 43/287 (14%), Positives = 95/287 (33%), Gaps = 27/287 (9%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126 +K L+ + + + + S+++ + ++ G + IT +R + + Sbjct: 6 VKKLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFMEREGISSFLDITYADVRLYLTTL 65 Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----M 179 S + ++S+R L+++ +R+ Y NP PK++ + E+ Sbjct: 66 HDEKLARKSVARKVSSLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELF 125 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238 + + G + + E + +G+R S+ + + + +I K + Sbjct: 126 EVSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFG 185 Query: 239 DGFMKLLAMTPI------------GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284 L F+N + + KA + Sbjct: 186 SYAQDALITYIENGRKQLAEKTEEQSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRI 245 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 S H +R AT D GA + G + + + YT + RL Sbjct: 246 SPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTH-VSKERL 291 >gi|3860920|emb|CAA14820.1| INTEGRASE/RECOMBINASE XERD (xerD) [Rickettsia prowazekii] Length = 335 Score = 132 bits (333), Expect = 6e-29, Method: Composition-based stats. Identities = 44/299 (14%), Positives = 102/299 (34%), Gaps = 36/299 (12%) Query: 71 LKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRK--ITTKHIRSGVESRK 127 I+++ + +L+ NS +S++ + ITT +IR +E Sbjct: 24 FMEFIAQFLEMLLAERALSKNSILSYKRDLLDFQHYLAAQKISELNITTGNIRKWIEYLA 83 Query: 128 H---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 S + +++++ + + + + + NP L+++ PK + + + + ++ Sbjct: 84 SNNLHARSINRKISTIKSYYAFLISENHTKFNPVLNIDLPKYQNKLPIILSIDQIKLILE 143 Query: 185 FW-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--------FSIKTQKTGT 231 + EG + L SGLR S+ + + N K Sbjct: 144 YCSKDNTPEGIRLNAMINLLYASGLRVSELVSLKLADILTNNTSKGTVRKIFSVLGKGNK 203 Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQ-------------KMNATQFSIWFKAKAT 278 + + D + + ++ F + M F+I K+ A Sbjct: 204 ERVIVINDQAVLSIIKYLEIRDFFINKAKSKNLIYLFPSSAVAGYMTRQNFAILLKSVAL 263 Query: 279 KAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGI 333 G+ + S H +R A+ + GA + G + + YT + ++ + Sbjct: 264 YTGLNPEHVSPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHLHTNHLKKAL 322 >gi|308174137|ref|YP_003920842.1| site-specific tyrosine recombinase [Bacillus amyloliquefaciens DSM 7] gi|307607001|emb|CBI43372.1| site-specific tyrosine recombinase for chromosome partitioning [Bacillus amyloliquefaciens DSM 7] gi|328554079|gb|AEB24571.1| site-specific tyrosine recombinase XerD [Bacillus amyloliquefaciens TA208] gi|328912472|gb|AEB64068.1| site-specific tyrosine recombinase for chromosome partitioning [Bacillus amyloliquefaciens LL3] Length = 296 Score = 132 bits (333), Expect = 6e-29, Method: Composition-based stats. Identities = 39/269 (14%), Positives = 96/269 (35%), Gaps = 24/269 (8%) Query: 85 GSLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVESRKHTPS---SAIQFL 137 L+ N+ +S+E + + +T HI ++ K + ++ + L Sbjct: 16 RGLSQNTMMSYERDLKSYSLFLTETLQITSWNDVTRLHIIQYLKHLKDSGKSGKTSARHL 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193 S+R ++ +R++ +P + +E K + + +++++ G + + Sbjct: 76 ASIRSFHQFLLREKAADKDPSVHIETQKTERALPKVLALQEVERLLDTPKLDSPFGLRDK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252 E L +G+R S+ + + + ++ V + + + Sbjct: 136 AMLELLYATGIRVSEMIELKLSDVHLTMGFVRCFGKGRKERIVPIGEAASHAIEAYIEKA 195 Query: 253 ETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 F+N+ ++++ F K A +AG+ K + H +R AT + Sbjct: 196 RGKLLKKNVTEALFLNHHGRQISRQGFWKNLKKIALEAGIKKELTPHTLRHSFATHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329 GA + G + + YT + Sbjct: 256 GADLRAVQEMLGHADISTTQIYTHVSKTR 284 >gi|260432502|ref|ZP_05786473.1| phage integrase family protein [Silicibacter lacuscaerulensis ITI-1157] gi|260416330|gb|EEX09589.1| phage integrase family protein [Silicibacter lacuscaerulensis ITI-1157] Length = 353 Score = 132 bits (332), Expect = 7e-29, Method: Composition-based stats. Identities = 75/337 (22%), Positives = 139/337 (41%), Gaps = 22/337 (6%) Query: 13 KERTRHGKIIYYFRKGHGRRIRLPYPHE-STFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + + GK+ Y + + G R+ P + F+ AY+ A + + K+ + + T+ Sbjct: 5 RRVKQDGKV-YRYHRATGTRLPDGIPEDHPDFLAAYLKAESQTGQKKPRRGASPRA-GTV 62 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 ++ KS + L+ R ++ D I+ K G +I HI + ++ + Sbjct: 63 AHAWWQFTKSDAFLDLSEGYRRRMMAHGDDIVAKGGKVPIDQIRAYHIENDIQDMDR--N 120 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 +A L + R WA + L +K + W+ + + F++ W + Sbjct: 121 AARTRLKAWRKFLDWAQPRLVERNWAKLVDMPKAKKGTPHKRWSADHVAAFRNRWPVDTP 180 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK---------TGTIITVELPDGFM 242 RLAFE +L++G+R D+ R G + + + QK + Sbjct: 181 QRLAFELMLFTGMRICDAVRCGPGWIDRDGWMTFKQKKTGGDALIAFNRDLPPFADAEAR 240 Query: 243 KLLAMTPIGKETFFINN----DKQKMNATQFSIWFKAKATKAGVN----KSAHGVRKFSA 294 L+ + + + S WF A KAG+ ++AHG+R Sbjct: 241 AYLSECLNARTERHMTFLATIHGTSRSEKAASNWFSDAARKAGLKGDQRRTAHGLRDTCC 300 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 A+ GATAH+LM G +++++AE YTK AD+ R+ Sbjct: 301 ARLAEGGATAHQLMTWSGHESLEEAERYTKDADKKRM 337 >gi|114769433|ref|ZP_01447059.1| tyrosine recombinase [alpha proteobacterium HTCC2255] gi|114550350|gb|EAU53231.1| tyrosine recombinase [alpha proteobacterium HTCC2255] Length = 305 Score = 132 bits (332), Expect = 7e-29, Method: Composition-based stats. Identities = 43/289 (14%), Positives = 83/289 (28%), Gaps = 29/289 (10%) Query: 73 WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS----GDFDYRKI-------TTKHIR 120 L+ + S G A + ++ I G + I + Sbjct: 9 DLMENWLSSLSAVGGRAEKTIDAYRHDVSHFIHFLSQHNGKMPSKAILSKVSVKDMRSWI 68 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT----- 175 S +P S + L++++ ++W + V+ LS PK + RP Sbjct: 69 SHARRSGLSPRSLARALSAIKSFYRWMGQTYGVSTTAVLSTRTPKFEKPLPRPVKKSDAK 128 Query: 176 --KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233 + + ++ L GLR S++ K Sbjct: 129 DLIKQIDLQSEHEWINARNVAVITLLYGCGLRISEALSITFDKTPLPEVLKIIGKGNKER 188 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGVN--K 284 V + + F+ ND+ +N + + G+ Sbjct: 189 IVPILPVAKAAVKNYLKCCPYSFLPNDRLFKGARGGPLNQRLIRKVMEQTRIQLGLPSTA 248 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 + H +R AT +AG + G ++ + YT D+ RL Sbjct: 249 TPHSMRHSFATHLLEAGGDLRVIQELLGHASLSSTQAYT-AVDQTRLMD 296 >gi|323491144|ref|ZP_08096332.1| phage integrase family protein [Vibrio brasiliensis LMG 20546] gi|323314609|gb|EGA67685.1| phage integrase family protein [Vibrio brasiliensis LMG 20546] Length = 345 Score = 132 bits (332), Expect = 7e-29, Method: Composition-based stats. Identities = 55/320 (17%), Positives = 112/320 (35%), Gaps = 15/320 (4%) Query: 13 KERTRHGKIIYYFRK-GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + R K Y + G+RI +P + + L + + + Sbjct: 5 QVRKGKKKTTYRVQFMRDGQRISKSFP-TKKSAEKFAALLVVDDDFSHSMTNQTLNSFLV 63 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHT 129 I EY + +++ R+S+ G K+T + +++ + + Sbjct: 64 SDAIDEYLQQYKGKDVSLAQRLSY------WSAAFGSIAVGKVTRQKVKAELRGLLKRCA 117 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 PS+ ++ ++ L+++ + + + NP + R + E++++ S Sbjct: 118 PSTVNRYKAALGTLYRYLLHEYDIDHNPTKGIPLLTENNARTRYLSDEEIERLLSACRHS 177 Query: 190 SQPRLAFEFLLY--SGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLL 245 S +L LL +G R S+ + + + T K G + L + L Sbjct: 178 SWNQLFLLVLLAITTGARRSELLTCRWESINLKTRTIHLSTTKNGEQRLLTLTHEAVTEL 237 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATA 304 F + M F +K TKA ++ H +R A+I A GA+ Sbjct: 238 MKYRRSSGYLFPCPELPAMYFKNFDYHWKEALTKAHIHSFRFHDLRHTCASILAMNGASL 297 Query: 305 HELMATYGWKTVDQAETYTK 324 E+ G KT+ + Y Sbjct: 298 LEIKQVLGHKTIAMTQRYAH 317 >gi|170757708|ref|YP_001782133.1| phage integrase [Clostridium botulinum B1 str. Okra] gi|169122920|gb|ACA46756.1| phage integrase [Clostridium botulinum B1 str. Okra] Length = 331 Score = 132 bits (332), Expect = 7e-29, Method: Composition-based stats. Identities = 48/301 (15%), Positives = 99/301 (32%), Gaps = 15/301 (4%) Query: 41 STFIPAYMSALTGSTPKREYINSPRKKPTT--LKWLISEYRKSAHWGSLAVNSRISFESY 98 + + + I K T ++ + Y S L++ + +++ Sbjct: 23 PEIDQLKVREIVEEVLYKYNILPQEKALMTSDVEEKLQIYLASKKLDGLSLETLKNYQYN 82 Query: 99 FDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAIN 156 I T +R + +R PSS ++ ++ F W +EY+ N Sbjct: 83 LAIFADYL-RKPLATINTMDLRMFLGARCKNMKPSSMNGQISILKSFFGWLEAEEYIPKN 141 Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216 P +++ K +P T+E+ + + + + EFL+ +G R + + + Sbjct: 142 PAAKLKQTKEPKRVRKPLTEEEAELLRQACETD-RQKALTEFLISTGCRLDEVFKVNKDN 200 Query: 217 LQNNIFS-IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI------NNDKQKMNATQF 269 + + S K V LL +E ++ Sbjct: 201 INWHEMSLFVVGKGDKERKVYFNTKAKILLKKYLFSREDDDPALFVTSKRPYHRLGKRSI 260 Query: 270 SIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 FK A AG+ KS H R AT ++G + G ++ + Y + ++ Sbjct: 261 QREFKKIANMAGIEKSIHPHLFRHSFATYKINSGMPMPIIQHLMGHESPATTQIYAQLSE 320 Query: 328 R 328 Sbjct: 321 E 321 >gi|325290382|ref|YP_004266563.1| Tyrosine recombinase xerC [Syntrophobotulus glycolicus DSM 8271] gi|324965783|gb|ADY56562.1| Tyrosine recombinase xerC [Syntrophobotulus glycolicus DSM 8271] Length = 300 Score = 132 bits (332), Expect = 7e-29, Method: Composition-based stats. Identities = 46/279 (16%), Positives = 90/279 (32%), Gaps = 24/279 (8%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRK--------SGDFDYRKITTKHIRSGVESR 126 I + +L++++ +++S Q + + + +R+ + Sbjct: 7 IDRFASYQKARNLSLHTISAYQSDLVQFTEFAAAELGVEFAEVELDLVDKIIVRTYIFQL 66 Query: 127 KHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + + L ++R F++ R+ V +P L + PK R E M++ Sbjct: 67 ADKGLSRRTVARKLAAIRAFFRYLSREGIVKQSPMLKINTPKLGQTLPRFLYPEHMEKLL 126 Query: 184 ----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELP 238 G + +L E L SGLR S+ ++ L ++ + G V L Sbjct: 127 AVLDDSSEMGQRDKLIIELLYGSGLRVSELVGINIEDLDLESAFVRIRGKGGKERIVPLT 186 Query: 239 DGFMKLLAMTPIGKETFFIN------NDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290 + + L +M+ KA +N+ H +R Sbjct: 187 EPAVLELRRYLDRWGRSQHQEALIRNYQGTRMSTRSVRRILDKLEKKANLNQHIYPHMLR 246 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT D GA + G K + + YT Sbjct: 247 HTFATHLLDGGADLRSVQELLGHKKLSSTQIYTHLTREK 285 >gi|89072532|ref|ZP_01159104.1| tyrosine recombinase [Photobacterium sp. SKA34] gi|89051636|gb|EAR57089.1| tyrosine recombinase [Photobacterium sp. SKA34] Length = 298 Score = 132 bits (332), Expect = 7e-29, Method: Composition-based stats. Identities = 37/280 (13%), Positives = 96/280 (34%), Gaps = 24/280 (8%) Query: 74 LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESR---K 127 +I + + L+ N+ S+ + +++R + ++ ++ + Sbjct: 7 IIERFLDAMWMERGLSENTLSSYRNDLTKLLRWLKQESRNVISVSVDDLQRYQQWLFDKD 66 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + +S + ++++R LF++ R++ +P + + PK + ++ + Sbjct: 67 YKQTSRARMVSAIRRLFQYLHREKMRDDDPSVMLVTPKLPKRLPKDLSEAQVDALLEAPD 126 Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 + + E L +GLR ++ ++++ ++ V + + + Sbjct: 127 VNDPIELRDKAMLELLYATGLRVTELVTLTMENISLRQGVVRITGKGDKERLVPMGENAV 186 Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289 + F + ++M F K A AG++ S H + Sbjct: 187 DWIEQFIETGRPQLLGEKSSDVLFPSRRARQMTRQTFWHRIKHYAVLAGIDADTLSPHVM 246 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + GA + G + + YT A Sbjct: 247 RHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER 286 >gi|260427090|ref|ZP_05781069.1| phage integrase family protein [Citreicella sp. SE45] gi|260421582|gb|EEX14833.1| phage integrase family protein [Citreicella sp. SE45] Length = 357 Score = 132 bits (332), Expect = 7e-29, Method: Composition-based stats. Identities = 71/361 (19%), Positives = 137/361 (37%), Gaps = 30/361 (8%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKGHG--RRIRLP-YPHESTFIPAYMSALTGSTPKREY 60 ++ P +V ++ R G+ ++ R RR+ +P P + F Y +A G +P E Sbjct: 2 RVQFPGYVPEK--RGGRTLHRVRVKGNAARRVTIPVGPEDPQFSALYHAARRGESP--EV 57 Query: 61 INSPRKKPTTLKWLISEYRK----SAHWGSLAVNSRISFESYFDQIIR--------KSGD 108 + +L L+ Y + G + + +S + + G Sbjct: 58 VKQSLAPAMSLDALVDAYLELLESDVRHGQASRLTHRQRKSLLKRACDMPDDSGTGRMGA 117 Query: 109 FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168 + +R + + A + ++R + R +++ NPC+ ++R R Sbjct: 118 LH-CDLPPVALRHIIAQWGARTAQADNTIKALRAAYD---RMDWLDANPCVGIKRVHRSK 173 Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH-LQNNIFSIKTQ 227 G PW+ D+Q F +G+ R+ L++G R SD + G + ++ + + Sbjct: 174 GGTTPWSTGDVQAFMKAHPQGTSARVWLMLALFTGARLSDLAKLGRANEVRRDGMTWIEW 233 Query: 228 KTGTIITVELPDGFMKLLAMTPIG-----KETFFINNDKQKMNATQFSIWFKAKATKAGV 282 + + LA + + N + + AG+ Sbjct: 234 QPSKRGSSHTSMPMAPQLAEAVRATGVIGRTYILNQQGQPFANGPVLAERVRRWTADAGL 293 Query: 283 NK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 + S+HG+RK I ADAGAT H++M+ + + YTK A R RL + I Sbjct: 294 ERRSSHGLRKALGGILADAGATEHQIMSVLSHASPTTSAIYTKSAQRARLAGEAMASIRG 353 Query: 342 V 342 + Sbjct: 354 L 354 >gi|52141657|ref|YP_085172.1| site-specific tyrosine recombinase XerC [Bacillus cereus E33L] gi|51975126|gb|AAU16676.1| site-specific integrase/recombinase XerD protein [Bacillus cereus E33L] Length = 299 Score = 132 bits (332), Expect = 7e-29, Method: Composition-based stats. Identities = 43/287 (14%), Positives = 95/287 (33%), Gaps = 27/287 (9%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126 +K L+ + + + + S+++ + ++ G + IT +R + + Sbjct: 3 VKKLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFMEREGISSFLDITYADVRLYLTTL 62 Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----M 179 S + ++S+R L+++ +R+ Y NP PK++ + E+ Sbjct: 63 HDEKLARKSVARKVSSLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELF 122 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238 + + G + + E + +G+R S+ + + + +I K + Sbjct: 123 EVSDTATPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFG 182 Query: 239 DGFMKLLAMTPI------------GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284 L F+N + + KA + Sbjct: 183 SYAQDALITYIENGRKQLAEKTEEQSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRI 242 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 S H +R AT D GA + G + + + YT + RL Sbjct: 243 SPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTH-VSKERL 288 >gi|257422531|ref|ZP_05599521.1| recombinase [Enterococcus faecalis X98] gi|257164355|gb|EEU94315.1| recombinase [Enterococcus faecalis X98] gi|315155672|gb|EFT99688.1| tyrosine recombinase XerC [Enterococcus faecalis TX0043] Length = 299 Score = 132 bits (332), Expect = 7e-29, Method: Composition-based stats. Identities = 36/280 (12%), Positives = 87/280 (31%), Gaps = 27/280 (9%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR- 126 L + Y + ++ +++ G+ +Y + +R+ + Sbjct: 6 WPELFARYL--IVERGYSEKTKKAYQEDIQHFFSFLKTSGNDNYLTVEHLDVRAYLSELY 63 Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 +++ +S + + S+R +++ ++ E + NP V K++ R + +++M Sbjct: 64 DQEYSRNSISRKIASLRSFYQFLLKNEAIQENPFSYVHMKKKQLRLPRFFYEKEMDALFE 123 Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD 239 + + E L +G+R S+ V + + K V Sbjct: 124 SAQGEQPLDLRNKALLEVLYGTGIRVSECANLTVDAVDFQASVLLVHGKGNKDRYVPFGS 183 Query: 240 GFMKLLAMT------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285 L F+N+ +++ T K+ + Sbjct: 184 FAQDALKDYLENGRALLMTKYQKKHPYVFVNHHGEQITPTGIEYVLNQLIKKSSLNAEIH 243 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 H +R AT + GA + G + + Y Sbjct: 244 PHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHV 283 >gi|300725867|ref|ZP_07059331.1| tyrosine recombinase XerD [Prevotella bryantii B14] gi|299776855|gb|EFI73401.1| tyrosine recombinase XerD [Prevotella bryantii B14] Length = 304 Score = 132 bits (332), Expect = 7e-29, Method: Composition-based stats. Identities = 49/288 (17%), Positives = 99/288 (34%), Gaps = 26/288 (9%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRKHT 129 Y K + + N+ ++ ++ + I K + + + Sbjct: 15 FDRYLKLE--CNYSANTLEAYRHDIRYLLEFFEEHQQNPIDAKLEDLELFATSIHEKGIG 72 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--- 186 S + L+ +R +++ + Y+ +P +E P T E++ + ++ Sbjct: 73 ARSQARILSGVRSFYRFLQLEGYIKDDPTELLESPHLGEHLPTYLTTEEVDRLEASIDLS 132 Query: 187 -SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-----------TQKTGTIIT 234 EG + + E L GLR S+ + + + ++ I Sbjct: 133 KWEGQRNKAIIEVLFSCGLRVSELVNLKISNCFMDEKFVRVLGKGSKERLVPISENAIRE 192 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292 V L+ + P ++ F+N + T I K +A AG+ K S H +R Sbjct: 193 VNYWLMDRNLMVIKPGEEDYLFLNRRGSHLTRTMILIMIKRQAVAAGITKIISPHTLRHS 252 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK--GADRIRLGIKNSRR 338 AT GA + G + + E YT +D R +++ R Sbjct: 253 FATALLKGGADLRAIQVMLGHEDIGTTEIYTHMETSDLKREILEHHPR 300 >gi|312795208|ref|YP_004028130.1| integrase/recombinase (XerD/RipX family) [Burkholderia rhizoxinica HKI 454] gi|312166983|emb|CBW73986.1| Integrase/recombinase (XerD/RipX family) [Burkholderia rhizoxinica HKI 454] Length = 308 Score = 132 bits (332), Expect = 7e-29, Method: Composition-based stats. Identities = 48/300 (16%), Positives = 83/300 (27%), Gaps = 22/300 (7%) Query: 60 YINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH 118 + T I + + L+ N+ ++ R + Sbjct: 5 QVQQASASRDTSAQAIDAFCDALWLEHGLSRNTLDAYRRDLSLYCDWLAATHERTLDATR 64 Query: 119 IRSGVESRKH----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 SSA + L+ R F WA+R+ VA +P L + ++ Sbjct: 65 ESDLNGYLAVRSDGKASSANRRLSVFRRYFAWALREHRVAADPTLRIRSARQPPRFPSSL 124 Query: 175 TKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230 + ++ + + R E + SGLR S+ + N ++ G Sbjct: 125 NEAQVEALLGAPDLDTPLGLRDRAMLELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKG 184 Query: 231 -TIITVELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATK 279 V D L F+ M QF K A + Sbjct: 185 AKERLVPFGDEARGWLERYLRDARAVLLGARGADALFVTARGGAMTRQQFWNIIKRYALR 244 Query: 280 AGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 A + S H +R AT + GA + G + + YT A + Sbjct: 245 ADIHVPLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARERLKALHAIH 304 >gi|218778262|ref|YP_002429580.1| tyrosine recombinase XerC [Desulfatibacillum alkenivorans AK-01] gi|218759646|gb|ACL02112.1| tyrosine recombinase XerC [Desulfatibacillum alkenivorans AK-01] Length = 315 Score = 132 bits (332), Expect = 7e-29, Method: Composition-based stats. Identities = 48/296 (16%), Positives = 100/296 (33%), Gaps = 32/296 (10%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG-----------DFDYRKITTKHIRS 121 I + +S + + +++ + + D ++ IR Sbjct: 14 WIDSFLESLAAERRYSPATCLAYGKDLREFFSYVAESGLQGEISPENADVERVDNLAIRG 73 Query: 122 GVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + S+ + L+S+R +++ ++ VA+NP SV PKRK T ++ Sbjct: 74 YLGFLHKKNEKSTMARKLSSLRSFYRFLEKRGRVAVNPAQSVVTPKRKKTVAAHLTVDEA 133 Query: 180 Q----QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIIT 234 G++ R FE L +G+R S+ + + + +++ K Sbjct: 134 FALLDSILDDSLAGARDRAMFECLYSTGIRVSELAGLNMGRVNFSGKTLRVLGKGDKERI 193 Query: 235 VELPDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-- 282 V + ++ + E F+N + ++ + G+ Sbjct: 194 VPVGAKALEHIKAYRDRLAVEGPKNPDPEAVFLNKNGGRLTTRSIRRILEKIVRDMGLNR 253 Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337 S HG+R AT D GA + G ++ YT + DR+ + Sbjct: 254 PLSPHGLRHTFATHMLDNGADLRSVQELLGHASISTTGRYTHVSIDRLMAAYDKAH 309 >gi|329905896|ref|ZP_08274277.1| site-specific tyrosine recombinase [Oxalobacteraceae bacterium IMCC9480] gi|327547427|gb|EGF32250.1| site-specific tyrosine recombinase [Oxalobacteraceae bacterium IMCC9480] Length = 304 Score = 132 bits (332), Expect = 7e-29, Method: Composition-based stats. Identities = 45/278 (16%), Positives = 92/278 (33%), Gaps = 23/278 (8%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFD---YRKITTKHIRSGVESRKH--TPSSAIQFLTSM 140 LA NS ++ +T I + +R ++A + L + Sbjct: 27 GLAKNSLEAYRRDLTAFALWLAQASQTGLLAVTGADINAYFAARHDASKATTANRRLAVL 86 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAF 196 + ++ A+R + ++ +PCL + K+ + ++ +++ + G + R Sbjct: 87 KRFYQLALRNKQISDDPCLKLHSAKQPPRFPKTLSEANVEALLAAPDVSTPLGLRDRTML 146 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT------- 248 E + SGLR ++ L N ++ V + + Sbjct: 147 ELMYASGLRVTELVLLKSIELSLNDGVVRVTGKGNKTRLVPFGEEARSWIERYLLEARAQ 206 Query: 249 ---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303 + F+ M F + K A +A + S H +R AT + GA Sbjct: 207 ILDGQMDDALFVTARGGPMTRQMFWVVVKKCAVRADIHAPLSPHTLRHAFATHLLNHGAD 266 Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 + G + + YT A R RL + ++ Sbjct: 267 LRVVQLLLGHADISTTQIYTHVA-RERLKVLHAAHHPR 303 >gi|254418822|ref|ZP_05032546.1| site-specific recombinase, phage integrase family protein [Brevundimonas sp. BAL3] gi|196184999|gb|EDX79975.1| site-specific recombinase, phage integrase family protein [Brevundimonas sp. BAL3] Length = 362 Score = 132 bits (332), Expect = 7e-29, Method: Composition-based stats. Identities = 68/365 (18%), Positives = 136/365 (37%), Gaps = 24/365 (6%) Query: 1 MTPS-LRLPP-FVTKERTRHGKI-IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPK 57 MTP+ ++LP K R ++ IY++R+ G L T A + + G Sbjct: 1 MTPAAIKLPGAHRVKMRLAGDRVGIYWYRRRGGPL--LMKFTGDTLGDALRAEIAGQQDL 58 Query: 58 REYINSPRKKP----TTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYR 112 + +P +P T++ +++ ++ + + SL ++R + D+++ + GD R Sbjct: 59 IDAYATPTARPEPSVITVREIVTRFKAAPDGYLSLRDSTRKVWAPMLDRVVDEFGDLPAR 118 Query: 113 KIT----TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168 + + I + TP SA + ++ + + V +E NP L V + Sbjct: 119 ALNAKGMRRAIIDWRDRYAATPRSADYGVQVLKRVLNFGVDRELCETNPALGVGTIYKNN 178 Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--------N 220 + E++ + + RLA +G+R D + + Sbjct: 179 RADQIIEPEELTAILA--NLSPAARLAVRLSAATGMRRGDLVDLRWSEVSDVSIERAAGK 236 Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280 + I ++ + + TF + + K + + F A KA Sbjct: 237 STNGVRIMVPLIREARDVLTELRQIRDSAKVTSTFVLTSRKGPWHGDGLTSLFVRAAAKA 296 Query: 281 GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 GV KS H +R +AT AG E+ +GW+ + + DR R+ R+ Sbjct: 297 GVKKSLHDLRGTAATRFVIAGLKDEEIADIFGWEPDRVRKIRVRYVDRARVAQGIITRLE 356 Query: 341 SVVDS 345 ++ Sbjct: 357 RRGEN 361 >gi|320355009|ref|YP_004196348.1| tyrosine recombinase XerD [Desulfobulbus propionicus DSM 2032] gi|320123511|gb|ADW19057.1| tyrosine recombinase XerD [Desulfobulbus propionicus DSM 2032] Length = 306 Score = 132 bits (332), Expect = 7e-29, Method: Composition-based stats. Identities = 51/281 (18%), Positives = 95/281 (33%), Gaps = 25/281 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD---YRKITTKHIRS---GVESRK 127 + + + LA N+ ++++ + R D D +I +H++ R+ Sbjct: 16 LQLFLQHLTLQRRLARNTVAAYQADLEFFFRFFSDADAILIERIDKEHVQQFFQYCHQRR 75 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S + L ++R F++ + +A NP ++ PK + T ++ S Sbjct: 76 IGARSNARRLAALRAFFRFLQDRGVLAGNPLAEIDAPKIGRSLPKVLTIAEVDALLRPPS 135 Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFM 242 + + L SGLR S+ V + ++ K V Sbjct: 136 PPTPLAIRNHAMLHLLYASGLRVSELVNLPVNGCNLHTGHLRILGKGNKERIVPFSAVAG 195 Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 +L F +N + M +F + A AG+ K S H +R Sbjct: 196 TILRDYIERVRPLLLKGKGSPLLFCSNRGEAMTRHRFWQIVREIALIAGIRKAISPHVLR 255 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIR 330 AT GA + G + + YT ADR++ Sbjct: 256 HSFATHLVAGGADLRSVQMMLGHSDIATTQIYTHVDADRLK 296 >gi|89890506|ref|ZP_01202016.1| tyrosine recombinase XerD [Flavobacteria bacterium BBFL7] gi|89517421|gb|EAS20078.1| tyrosine recombinase XerD [Flavobacteria bacterium BBFL7] Length = 298 Score = 132 bits (332), Expect = 7e-29, Method: Composition-based stats. Identities = 52/286 (18%), Positives = 96/286 (33%), Gaps = 26/286 (9%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR----KITTKHIRSGVES 125 + +I ++ + SLA N+ ++ ++ D +I + +R + Sbjct: 3 WEHIIKDFLTYSRLERSLADNTLKAYSRDLHKLNNWLLANDISISPTEINSNILRDYIYE 62 Query: 126 RKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM---- 179 + S + L+S++V F + + ++Y NP +E PK + + +++ Sbjct: 63 LAKNVSSRSQARALSSLKVFFNYLILEDYRKDNPLELIESPKIGRKLPDTLSTQEIDALI 122 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN------------IFSIKTQ 227 G + R E L GLR S+ + L I Sbjct: 123 NSIDRSTPHGERNRAILETLYGCGLRVSELTTLKISDLFFQEGFIKVTGKGDKQRFIPIG 182 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--S 285 + + L + P +T F+N + K KAG+ K S Sbjct: 183 DFTIKVINLYINEIRPHLPIKPQHTDTVFLNRRGAGLTRAMIFHIIKELKVKAGITKKIS 242 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 H R AT + GA + G +++ E Y DR L Sbjct: 243 PHTFRHSFATHLLENGADLRSIQMMLGHESITTTEIYMH-VDRAHL 287 >gi|34222908|sp|Q8NNZ9|XERC_CORGL RecName: Full=Tyrosine recombinase xerC gi|21324798|dbj|BAB99421.1| Integrase [Corynebacterium glutamicum ATCC 13032] Length = 308 Score = 132 bits (332), Expect = 7e-29, Method: Composition-based stats. Identities = 46/305 (15%), Positives = 102/305 (33%), Gaps = 19/305 (6%) Query: 50 ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGD 108 A +G S P+ L LI ++ + + + + S + D Sbjct: 2 ARSGRNA-PPSGISGADAPSKLHTLIDDFCEHLDLVVGRSAATIRGYRSDLYAMADTIED 60 Query: 109 FDYRKI-TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167 D + T + + ++ + S++ WA + ++ + + PK Sbjct: 61 IDNFSLPTLRQWLGIAVDEGKSRATLARRTASVKAFSSWAQKNGHLKADEAARLISPKIT 120 Query: 168 TEGIRPWTKEDMQQF-----KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222 + + ++ F + E + E L +G+R ++ C + + + Sbjct: 121 RDLPKILGEQQAGDFVENAASTNEEEFLRDSAILELLYATGMRVAELCGIDLSDIDYDRK 180 Query: 223 SIKT-QKTGTIITVELPDGFMKLLAMTPIGKETFFINN-------DKQKMNATQFSIWFK 274 ++ K V + K L ++ + Q++NA Q Sbjct: 181 MVRVLGKGNKERVVPFGESAHKALRNWLDVRDEMTEDPKALFVGVRGQRINARQVRRIVD 240 Query: 275 AKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 A GV+ S H +R +AT D GA ++ G ++ + YT +++ L Sbjct: 241 RAAKVTGVDHLSPHSLRHTAATHLLDGGADLRQVQELLGHSSMQTTQIYTHVSNKRLL-- 298 Query: 334 KNSRR 338 + + Sbjct: 299 EAFNK 303 >gi|47570332|ref|ZP_00240977.1| site-specific recombinase, phage integrase family [Bacillus cereus G9241] gi|47552997|gb|EAL11403.1| site-specific recombinase, phage integrase family [Bacillus cereus G9241] Length = 302 Score = 132 bits (332), Expect = 7e-29, Method: Composition-based stats. Identities = 43/287 (14%), Positives = 95/287 (33%), Gaps = 27/287 (9%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126 +K L+ + + + + S+++ + ++ G + IT +R + + Sbjct: 6 VKKLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFMEREGISSFLDITYADVRLYLTTL 65 Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----M 179 S + ++S+R L+++ +R+ Y NP PK++ + E+ Sbjct: 66 HDEKLARKSVARKVSSLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELF 125 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238 + + G + + E + +G+R S+ + + + +I K + Sbjct: 126 EVSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFG 185 Query: 239 DGFMKLLAMTPI------------GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284 L F+N + + KA + Sbjct: 186 SYAQDALITYIENGRKQLAEKTEEHSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRI 245 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 S H +R AT D GA + G + + + YT + RL Sbjct: 246 SPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTH-VSKERL 291 >gi|189485661|ref|YP_001956602.1| tyrosine recombinase XerD [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287620|dbj|BAG14141.1| tyrosine recombinase XerD [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 294 Score = 132 bits (332), Expect = 8e-29, Method: Composition-based stats. Identities = 41/274 (14%), Positives = 90/274 (32%), Gaps = 24/274 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYR-------KITTKHIRSGVESRKHTPSSAIQFL 137 L+ N+ +++++ + I + IT E P S + + Sbjct: 19 KGLSENTVLAYKADVLKFINFAKKKRISLENFEHNDITDFLWEMKTEGL--KPRSIFRVI 76 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPR 193 S+R +K+ ++ NP L + P T +++ + ++ + + Sbjct: 77 ESLRQFYKFLNSEDLAKNNPTLYLATPNLPENLPDILTFDEVDLLLNSINDDDEMHIRNK 136 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252 E L +GLR S+ + ++ V + +++ + Sbjct: 137 AMLELLYAAGLRVSELINLKFSDINLEDCFLRIIGKGSKERLVPFGNKAKFFISIYLKKR 196 Query: 253 ETFFINNDKQKMNATQ-------FSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303 ND ++ F K A G+NK + H +R A+ GA Sbjct: 197 RPCLNVNDHIFISRLGKKLSRIEFWRQLKNIAKNVGINKNITPHTLRHSFASHLLKGGAD 256 Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 + G ++ + YT D R+ ++ + Sbjct: 257 IRFVQEMLGHASITTTQIYTH-LDEDRIVQQHKK 289 >gi|29376202|ref|NP_815356.1| phage integrase family site specific recombinase [Enterococcus faecalis V583] gi|227518833|ref|ZP_03948882.1| site-specific recombinase XerD [Enterococcus faecalis TX0104] gi|227553450|ref|ZP_03983499.1| site-specific recombinase XerD [Enterococcus faecalis HH22] gi|229549931|ref|ZP_04438656.1| site-specific recombinase XerD [Enterococcus faecalis ATCC 29200] gi|255972714|ref|ZP_05423300.1| phage integrase [Enterococcus faecalis T1] gi|256619143|ref|ZP_05475989.1| integrase [Enterococcus faecalis ATCC 4200] gi|256762579|ref|ZP_05503159.1| phage integrase [Enterococcus faecalis T3] gi|256853205|ref|ZP_05558575.1| site-specific recombinase [Enterococcus faecalis T8] gi|256961848|ref|ZP_05566019.1| phage integrase [Enterococcus faecalis Merz96] gi|257082471|ref|ZP_05576832.1| phage integrase [Enterococcus faecalis E1Sol] gi|257086664|ref|ZP_05581025.1| phage integrase [Enterococcus faecalis D6] gi|257416173|ref|ZP_05593167.1| integrase [Enterococcus faecalis AR01/DG] gi|257419375|ref|ZP_05596369.1| phage integrase [Enterococcus faecalis T11] gi|293382913|ref|ZP_06628831.1| tyrosine recombinase XerC [Enterococcus faecalis R712] gi|293389598|ref|ZP_06634055.1| tyrosine recombinase XerC [Enterococcus faecalis S613] gi|300860343|ref|ZP_07106430.1| tyrosine recombinase XerC [Enterococcus faecalis TUSoD Ef11] gi|307274878|ref|ZP_07556041.1| tyrosine recombinase XerC [Enterococcus faecalis TX2134] gi|307291916|ref|ZP_07571785.1| tyrosine recombinase XerC [Enterococcus faecalis TX0411] gi|312907617|ref|ZP_07766608.1| tyrosine recombinase XerC [Enterococcus faecalis DAPTO 512] gi|312910234|ref|ZP_07769081.1| tyrosine recombinase XerC [Enterococcus faecalis DAPTO 516] gi|29343665|gb|AAO81426.1| site-specific recombinase, phage integrase family [Enterococcus faecalis V583] gi|227073746|gb|EEI11709.1| site-specific recombinase XerD [Enterococcus faecalis TX0104] gi|227177426|gb|EEI58398.1| site-specific recombinase XerD [Enterococcus faecalis HH22] gi|229304944|gb|EEN70940.1| site-specific recombinase XerD [Enterococcus faecalis ATCC 29200] gi|255963732|gb|EET96208.1| phage integrase [Enterococcus faecalis T1] gi|256598670|gb|EEU17846.1| integrase [Enterococcus faecalis ATCC 4200] gi|256683830|gb|EEU23525.1| phage integrase [Enterococcus faecalis T3] gi|256711664|gb|EEU26702.1| site-specific recombinase [Enterococcus faecalis T8] gi|256952344|gb|EEU68976.1| phage integrase [Enterococcus faecalis Merz96] gi|256990501|gb|EEU77803.1| phage integrase [Enterococcus faecalis E1Sol] gi|256994694|gb|EEU81996.1| phage integrase [Enterococcus faecalis D6] gi|257158001|gb|EEU87961.1| integrase [Enterococcus faecalis ARO1/DG] gi|257161203|gb|EEU91163.1| phage integrase [Enterococcus faecalis T11] gi|291079578|gb|EFE16942.1| tyrosine recombinase XerC [Enterococcus faecalis R712] gi|291081215|gb|EFE18178.1| tyrosine recombinase XerC [Enterococcus faecalis S613] gi|295113045|emb|CBL31682.1| tyrosine recombinase XerC subunit [Enterococcus sp. 7L76] gi|300849382|gb|EFK77132.1| tyrosine recombinase XerC [Enterococcus faecalis TUSoD Ef11] gi|306496914|gb|EFM66462.1| tyrosine recombinase XerC [Enterococcus faecalis TX0411] gi|306508326|gb|EFM77433.1| tyrosine recombinase XerC [Enterococcus faecalis TX2134] gi|310626645|gb|EFQ09928.1| tyrosine recombinase XerC [Enterococcus faecalis DAPTO 512] gi|311289507|gb|EFQ68063.1| tyrosine recombinase XerC [Enterococcus faecalis DAPTO 516] gi|315027186|gb|EFT39118.1| tyrosine recombinase XerC [Enterococcus faecalis TX2137] gi|315029303|gb|EFT41235.1| tyrosine recombinase XerC [Enterococcus faecalis TX4000] gi|315034051|gb|EFT45983.1| tyrosine recombinase XerC [Enterococcus faecalis TX0017] gi|315145127|gb|EFT89143.1| tyrosine recombinase XerC [Enterococcus faecalis TX2141] gi|315147344|gb|EFT91360.1| tyrosine recombinase XerC [Enterococcus faecalis TX4244] gi|315150456|gb|EFT94472.1| tyrosine recombinase XerC [Enterococcus faecalis TX0012] gi|315158157|gb|EFU02174.1| tyrosine recombinase XerC [Enterococcus faecalis TX0312] gi|315160539|gb|EFU04556.1| tyrosine recombinase XerC [Enterococcus faecalis TX0645] gi|315169812|gb|EFU13829.1| tyrosine recombinase XerC [Enterococcus faecalis TX1342] gi|315172224|gb|EFU16241.1| tyrosine recombinase XerC [Enterococcus faecalis TX1346] gi|315575784|gb|EFU87975.1| tyrosine recombinase XerC [Enterococcus faecalis TX0309B] gi|315580436|gb|EFU92627.1| tyrosine recombinase XerC [Enterococcus faecalis TX0309A] gi|323480809|gb|ADX80248.1| tyrosine recombinase XerC [Enterococcus faecalis 62] gi|327535213|gb|AEA94047.1| tyrosine recombinase XerC [Enterococcus faecalis OG1RF] Length = 299 Score = 132 bits (332), Expect = 8e-29, Method: Composition-based stats. Identities = 36/280 (12%), Positives = 87/280 (31%), Gaps = 27/280 (9%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR- 126 L + Y + ++ +++ G+ +Y + +R+ + Sbjct: 6 WPELFARYL--IVERGYSEKTKKAYQEDIQHFFSFLKTSGNDNYLTVEHLDVRAYLSELY 63 Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 +++ +S + + S+R +++ ++ E + NP V K++ R + +++M Sbjct: 64 DQEYSRNSISRKIASLRSFYQFLLKNEAIQENPFSYVHMKKKQLRLPRFFYEKEMDALFE 123 Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD 239 + + E L +G+R S+ V + + K V Sbjct: 124 SAQGEQPLDLRNQALLEVLYGTGIRVSECANLTVDAVDFQASVLLVHGKGNKDRYVPFGS 183 Query: 240 GFMKLLAMT------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285 L F+N+ +++ T K+ + Sbjct: 184 FAQDALKDYLENGRALLMTKYQKKHPYVFVNHHGEQITPTGIEYVLNQLIKKSSLNAEIH 243 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 H +R AT + GA + G + + Y Sbjct: 244 PHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHV 283 >gi|257085103|ref|ZP_05579464.1| phage integrase [Enterococcus faecalis Fly1] gi|256993133|gb|EEU80435.1| phage integrase [Enterococcus faecalis Fly1] gi|315168954|gb|EFU12971.1| tyrosine recombinase XerC [Enterococcus faecalis TX1341] Length = 299 Score = 132 bits (332), Expect = 8e-29, Method: Composition-based stats. Identities = 36/280 (12%), Positives = 87/280 (31%), Gaps = 27/280 (9%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR- 126 L + Y + ++ +++ G+ +Y + +R+ + Sbjct: 6 WPELFARYL--IVERGYSEKTKKAYQEDIQHFFSFLKTSGNDNYLTVEHLDVRAYLSELY 63 Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 +++ +S + + S+R +++ ++ E + NP V K++ R + +++M Sbjct: 64 DQEYSRNSISRKIASLRSFYQFLLKNEAIQENPFSYVHMKKKQLRLPRFFYEKEMDALFE 123 Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD 239 + + E L +G+R S+ V + + K V Sbjct: 124 SAQGEQPLDLRNQALLEVLYGTGIRVSECANLTVDAVDFQASVLLVHGKGNKDRYVPFGS 183 Query: 240 GFMKLLAMT------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285 L F+N+ +++ T K+ + Sbjct: 184 FAQDALKDYLENGRALLMTKYQKKHPYIFVNHHGEQITPTGIEYVLNQLIKKSSLNAEIH 243 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 H +R AT + GA + G + + Y Sbjct: 244 PHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHV 283 >gi|39996918|ref|NP_952869.1| integrase/recombinase XerD [Geobacter sulfurreducens PCA] gi|39983806|gb|AAR35196.1| integrase/recombinase XerD [Geobacter sulfurreducens PCA] Length = 295 Score = 132 bits (332), Expect = 8e-29, Method: Composition-based stats. Identities = 46/270 (17%), Positives = 91/270 (33%), Gaps = 24/270 (8%) Query: 85 GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLT 138 LA NS S+ + + + D I H+ + K + S + L+ Sbjct: 16 KGLARNSVESYARDLSRYLGYVEQHAGGDPAAIRPLHVADFLAHLKESGLGARSRARALS 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRL 194 ++R+ ++ + + Y NP +E P+ + + T +++ + + R Sbjct: 76 AVRMFHRFLLVEGYAETNPTSIIEAPRVLAKLPQVLTGREVEMLLAAPAGDAPIEVRDRA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMTPIGKE 253 E L +GLR S+ + + + + K V + + + + Sbjct: 136 MLELLYATGLRVSELVGLRTRDVNTSAGYLMTVGKGEKERLVPMGESACAAVVLYLSSAR 195 Query: 254 TFFINNDKQK----------MNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAG 301 + M F K ++ +AG+ S H +R AT + G Sbjct: 196 IQLGRGGESPFLFLSRLGERMTRQAFWNIIKKRSRQAGILKGISPHTLRHSFATHLLENG 255 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRL 331 A + A G + + YT R RL Sbjct: 256 ADLRSVQAMLGHADLSTTQIYTHVT-RERL 284 >gi|257089964|ref|ZP_05584325.1| phage integrase [Enterococcus faecalis CH188] gi|312903388|ref|ZP_07762568.1| tyrosine recombinase XerC [Enterococcus faecalis TX0635] gi|256998776|gb|EEU85296.1| phage integrase [Enterococcus faecalis CH188] gi|310633264|gb|EFQ16547.1| tyrosine recombinase XerC [Enterococcus faecalis TX0635] gi|315577626|gb|EFU89817.1| tyrosine recombinase XerC [Enterococcus faecalis TX0630] Length = 299 Score = 132 bits (332), Expect = 8e-29, Method: Composition-based stats. Identities = 36/280 (12%), Positives = 88/280 (31%), Gaps = 27/280 (9%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR- 126 L + Y + ++ +++ G+ +Y + +R+ + Sbjct: 6 WPELFARYL--IVERGYSEKTKKAYQEDIQHFFSFLKTSGNDNYLTVEHLDVRAYLSELY 63 Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 +++ +S + + S+R ++++++ E + NP V K++ R + +++M Sbjct: 64 DQEYSRNSISRKIASLRSFYQFSLKNEAIQENPFSYVHMKKKQLRLPRFFYEKEMDALFE 123 Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD 239 + + E L +G+R S+ V + + K V Sbjct: 124 SAQGEHPLDLRNQALLEVLYGTGIRVSECANLTVDAVDFQASVLLVHGKGNKDRYVPFGS 183 Query: 240 GFMKLLAMT------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285 L F+N+ +++ T K+ + Sbjct: 184 FAQDALKDYLENGRALLMTKYQKKHPYVFVNHHGEQITPTGIEYVLNQLIKKSSLNAEIH 243 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 H +R AT + GA + G + + Y Sbjct: 244 PHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHV 283 >gi|253681771|ref|ZP_04862568.1| tyrosine recombinase XerD [Clostridium botulinum D str. 1873] gi|253561483|gb|EES90935.1| tyrosine recombinase XerD [Clostridium botulinum D str. 1873] Length = 292 Score = 132 bits (332), Expect = 8e-29, Method: Composition-based stats. Identities = 42/280 (15%), Positives = 101/280 (36%), Gaps = 20/280 (7%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI-----RSGVESR 126 + +S+Y + L+ N+ +++ + + + + + ++ Sbjct: 2 EKFLSKYIEDMLKKELSKNTIEAYKRDLLKFAKFLNKRHENILESDMVSIMAYVQILKKE 61 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK--- 183 + SS I+ L ++R +K+ ++ NP ++ E PK K T +++ +F Sbjct: 62 RKADSSIIRSLVAIRNFYKFLIKTGENVDNPLINYEVPKNKRTLPEILTVDEVDKFLSAP 121 Query: 184 -SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KTGTIITVELPDGF 241 +G + + E + +G++ S+ + + + + IK + + + Sbjct: 122 DCSEYKGIRDKAMLELMYATGMKVSELLKITIFDVNLKLSYIKCKGAKDKERIIPIGSYA 181 Query: 242 MKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRK 291 + L ++ F N KM F K A A +NK + +R Sbjct: 182 VNCLNEYLKVRDKMNADNSELLFCNLRGGKMTRQGFWKIVKKYAKDANINKKIDSYTLRH 241 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 A GA + G T+ + Y+ + + ++ Sbjct: 242 SFAVHLLQNGADMKSVQELLGHNTIATTQIYSSISKKNKI 281 >gi|269958271|ref|YP_003328058.1| tyrosine recombinase [Anaplasma centrale str. Israel] gi|269848100|gb|ACZ48744.1| tyrosine recombinase [Anaplasma centrale str. Israel] Length = 312 Score = 132 bits (332), Expect = 8e-29, Method: Composition-based stats. Identities = 46/296 (15%), Positives = 104/296 (35%), Gaps = 36/296 (12%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRK 127 + EY S ++ N+ S+ S + + G + R + + + SR Sbjct: 8 DVFLEYLVS--GRCVSPNTSSSYRSDLEDLAEFLGRRNLRMVDASAADLRAYVRSLNSRG 65 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185 ++P++ + + ++R L+ + + +P +++ K + T +++ + Sbjct: 66 YSPATISRRVAAIRGLYGFLYGDRIIDGDPAANLDSCKLGRPLPKVLTVDEVDKLLRAAG 125 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG------------ 230 EG + L SG+R S+ G +++ + ++ Sbjct: 126 SDLSVEGRRTAAIVNILYSSGVRISELINLGFYDIESMLKEQRSDVGHLVIKGKAGRERL 185 Query: 231 --------TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 I L ++ + F Q ++ + KA A AGV Sbjct: 186 ILLNEVAIASIVAYLAVRDHFIVGQKSESRWLFPGAKFDQCISRQRVGQLLKALAIVAGV 245 Query: 283 N---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIK 334 + S H +R AT + G+ + G ++ + YT A DR++ ++ Sbjct: 246 DPKRISPHKLRHSFATHLLNNGSNVVFIQKMLGHASLSTTQIYTYVANDRLKEALQ 301 >gi|291286626|ref|YP_003503442.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809] gi|290883786|gb|ADD67486.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809] Length = 342 Score = 132 bits (332), Expect = 8e-29, Method: Composition-based stats. Identities = 56/338 (16%), Positives = 114/338 (33%), Gaps = 13/338 (3%) Query: 17 RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76 +H YY + L + AL S +++ + + + T+ + Sbjct: 5 KHSNGTYYVIIDRNHKRSLGTKN-KAEAERIFKALKKSDFQKKIADLEKTE--TISEFFA 61 Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSA 133 + + + + S + G+ +T K + R + +S Sbjct: 62 DCLEDYKYKK-EKATYTSMSYSLNAFEGFIGEKLLNGVTKKDLSDFTTHRLKAGYAKTSI 120 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193 + +++ F AV E +A NP ++ K + T +D+ +F + + R Sbjct: 121 NIDIRNIKAAFSKAVEWEKLAQNPLNGFKQLKIDKNLPKFLTFDDLDKFANILGDNP-LR 179 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAMTPIG 251 AF F + +G R S++ + I+ K + + D +LL Sbjct: 180 HAFFFYVLTGCRRSEALVLTWDDIDFTRMVVHIRKTKNHEARDIPICDSLYELLNGITPK 239 Query: 252 KET-FFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMA 309 + F ++ + K T+AG H +R A++ A +G T + Sbjct: 240 QGYLFPGKIKGTHLDKDTMTHNIKDCLTEAGFPDMRLHDLRHTFASLLALSGETLQTIRD 299 Query: 310 TYGWKTVDQAETYTK-GADRIRLGIKNSRRISSVVDSD 346 G + E Y AD ++ + + S D D Sbjct: 300 LLGHSDIRTTEIYAHLTADHLKAAVNKLKVNVSTTDKD 337 >gi|110639086|ref|YP_679295.1| site-specific recombinase [Cytophaga hutchinsonii ATCC 33406] gi|110281767|gb|ABG59953.1| site-specific recombinase [Cytophaga hutchinsonii ATCC 33406] Length = 299 Score = 132 bits (332), Expect = 8e-29, Method: Composition-based stats. Identities = 50/277 (18%), Positives = 95/277 (34%), Gaps = 26/277 (9%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-------GDFDYRKITTKHIRSGVES 125 LI ++R SL+ NS ++E + ++ G + + + Sbjct: 6 LIRQFRDYLKLERSLSGNSVEAYEHDVIKFMQFLELTEPSVGPLQVKGKHIQLFLEYITE 65 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + S + L+ ++ F++ + +E +P ++ PK + + +++Q Sbjct: 66 LGMSAYSQARILSGIKSFFRFLLMEEIRDEDPSSLIDSPKLGRKLPDTLSFPEIEQILLA 125 Query: 186 W----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDG 240 EG + R E L GLR S+ + +L + F K V + Sbjct: 126 IDLSTPEGMRNRAMLETLYSCGLRVSELTDLKISNLFFDDGFVKVLGKGNKERLVPIGRD 185 Query: 241 FMKLLAMTPIGKETF-----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AH 287 K + M F+N K++ K A K G+ K+ H Sbjct: 186 ARKYIGMYRNEVRCHLDIVKGAENYVFLNRRGNKLSRVMVFTIIKNLAVKIGLKKTVSPH 245 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT + GA + G +++ E YT Sbjct: 246 TFRHSFATHLIEGGADLRAVQEMLGHESITTTEIYTH 282 >gi|71064633|ref|YP_263360.1| phage integrase [Psychrobacter arcticus 273-4] gi|71037618|gb|AAZ17926.1| probable phage integrase [Psychrobacter arcticus 273-4] Length = 312 Score = 132 bits (332), Expect = 8e-29, Method: Composition-based stats. Identities = 52/325 (16%), Positives = 99/325 (30%), Gaps = 40/325 (12%) Query: 47 YMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS 106 A+ PK ++ ++E+R++ LA +R ++ + Sbjct: 3 RDRAVQQRQPKALAVDDEPA-------YMTEFRQAMLARGLATRTRNAYVRDLRS-CELT 54 Query: 107 GDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163 + + + + TP + + L+S+R + W + NPC ++ Sbjct: 55 NHAALTRWQPEDVLCCLSILTQDGKTPRTQARMLSSLRQFYLWMIASNLREDNPCERIKS 114 Query: 164 PKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219 PK + + D+ + G + + E L GLR S+ ++ + Sbjct: 115 PKLGRPLPKDLAEADVDNLLAAPDSSTALGLRDKAMLEVLYACGLRVSELVNLSLEQVNL 174 Query: 220 NIFS-IKTQKTGTIITVELPDGFMKLLAMTPIG-------------KETFFINNDKQKMN 265 N T K V L + L + F+ M Sbjct: 175 NSGWLQITGKGNKTRLVPLGEYASDALEDYLTHGRGDLIAHLKAGNCQAVFLTAQGGYMT 234 Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 F K A A ++K S H +R AT + GA + G + + YT Sbjct: 235 RQNFWYLLKKYAKVASIDKALSPHTLRHAFATHLLNHGADLRSVQLLLGHSNLSTTQIYT 294 Query: 324 KGADRIRLGIKNSRRISSVVDSDDP 348 + R+ + P Sbjct: 295 HV---------ATARLQKLHAEHHP 310 >gi|229117317|ref|ZP_04246695.1| Tyrosine recombinase xerC [Bacillus cereus Rock1-3] gi|228666217|gb|EEL21681.1| Tyrosine recombinase xerC [Bacillus cereus Rock1-3] Length = 302 Score = 132 bits (332), Expect = 8e-29, Method: Composition-based stats. Identities = 42/287 (14%), Positives = 94/287 (32%), Gaps = 27/287 (9%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126 +K L+ + + + + S+++ + ++ G + +T +R + + Sbjct: 6 VKKLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYADVRLYLTTL 65 Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----M 179 S + ++S+R L+++ +R+ Y NP PK++ + E+ Sbjct: 66 HDEKLARKSVARKVSSLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELF 125 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238 + G + + E + +G+R S+ + + + +I K + Sbjct: 126 EVSDMETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFG 185 Query: 239 DGFMKLLAMTPI------------GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284 L F+N + + KA + Sbjct: 186 SYAQDALITYMENGRKQLANKTEEQSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRI 245 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 S H +R AT D GA + G + + + YT + RL Sbjct: 246 SPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTH-VSKERL 291 >gi|126728048|ref|ZP_01743864.1| probable integrase protein [Sagittula stellata E-37] gi|126711013|gb|EBA10063.1| probable integrase protein [Sagittula stellata E-37] Length = 384 Score = 132 bits (332), Expect = 8e-29, Method: Composition-based stats. Identities = 51/350 (14%), Positives = 102/350 (29%), Gaps = 21/350 (6%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRR---IRLPYPHESTFIPAYMSAL-----TGSTPKREY 60 P G+ Y + GRR I L T A A+ + Sbjct: 27 PGFGLRVLPSGRKGYVVQYRAGRRSRRISLGPSTVLTCEQARNRAISIFAAARNGEDPAA 86 Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHI 119 +K T+K L + K + ++ + ++ + G IT + Sbjct: 87 ERDAGRKAITVKELAERFDKEHIAIRVKASTAKEYRRNLERFILPALGQLTVTGITRADV 146 Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW----- 174 +H P A + L + +F A K E + Sbjct: 147 AKFHHDLRHIPYQANRRLEVVSKMFGLAEMWGLRPDGTNPRKHIRKYPEEKRERFLSAAE 206 Query: 175 ---TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 E +++ ++ E LA L+ +G R ++ H+ ++ + + Sbjct: 207 LRRIGEVLREMEAEGIELPSAILAARLLILTGCRLNEIMTLKWAHVDLAERVLRLPDSKS 266 Query: 232 IITVEL-PDGFMKLLAMTPIGKETFFINNDKQKMNA-TQFSIWFKAKATKAGV-NKSAHG 288 V + LL E ++ + +++ +AGV + H Sbjct: 267 GAKVVHLGQPVVDLLRDAQHIDENPWVITGILPGKRLSDLQPFWQRVRARAGVKDVRIHD 326 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSR 337 +R A+ + +G + G V Y A+ +R+ Sbjct: 327 LRHTFASTAVASGQGLPMIGKLLGHTQVQTTARYAHLAAEPVRMAADAVA 376 >gi|313206906|ref|YP_004046083.1| tyrosine recombinase xerd [Riemerella anatipestifer DSM 15868] gi|312446222|gb|ADQ82577.1| tyrosine recombinase XerD [Riemerella anatipestifer DSM 15868] gi|325335657|gb|ADZ11931.1| XerD [Riemerella anatipestifer RA-GD] Length = 303 Score = 132 bits (332), Expect = 8e-29, Method: Composition-based stats. Identities = 48/280 (17%), Positives = 93/280 (33%), Gaps = 26/280 (9%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGVESRKHT 129 I ++ + + +L+ N+ ++ ++ K D I+ + I+ + Sbjct: 7 IQDFANALKFEKNLSNNTIDAYTRDIKKLQYFAENKLNDTSALDISYEQIQEYLYQISKN 66 Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 S ++++S++ FK+ E A NP +E PK + E+++ Sbjct: 67 YTNERSQSRWISSIKAFFKFLHEDELRADNPARLLETPKLGLYLPDTLSFEEIESLIEAI 126 Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ------------KTG 230 G + E L GLR S+ + +L I + Sbjct: 127 DKTTSLGKRNHTIIETLYGCGLRVSELVELKISNLNFEEEFIIVDGKGGKTRLVPLAQYT 186 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288 + + + + P + F+N K+ I K A +A + K S H Sbjct: 187 AELIKDYLLEVRSEIKINPKHSDILFLNRRGSKLTRVMVFIIIKDLALQANIKKNISPHT 246 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 R AT GA + G ++ E YT + Sbjct: 247 FRHSFATHLLKNGADLRYIQEMLGHSSITTTEIYTHLDNE 286 >gi|256959059|ref|ZP_05563230.1| integrase [Enterococcus faecalis DS5] gi|257079090|ref|ZP_05573451.1| phage integrase [Enterococcus faecalis JH1] gi|294781639|ref|ZP_06746975.1| tyrosine recombinase XerC [Enterococcus faecalis PC1.1] gi|307270938|ref|ZP_07552221.1| tyrosine recombinase XerC [Enterococcus faecalis TX4248] gi|256949555|gb|EEU66187.1| integrase [Enterococcus faecalis DS5] gi|256987120|gb|EEU74422.1| phage integrase [Enterococcus faecalis JH1] gi|294451335|gb|EFG19801.1| tyrosine recombinase XerC [Enterococcus faecalis PC1.1] gi|306512436|gb|EFM81085.1| tyrosine recombinase XerC [Enterococcus faecalis TX4248] gi|315037059|gb|EFT48991.1| tyrosine recombinase XerC [Enterococcus faecalis TX0027] Length = 299 Score = 132 bits (332), Expect = 8e-29, Method: Composition-based stats. Identities = 36/280 (12%), Positives = 87/280 (31%), Gaps = 27/280 (9%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR- 126 L + Y + ++ +++ G+ +Y + +R+ + Sbjct: 6 WPELFARYL--IVERGYSEKTKKAYQEDIQHFFSFLKTSGNDNYLTVEHLDVRAYLSELY 63 Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 +++ +S + + S+R +++ ++ E + NP V K++ R + +++M Sbjct: 64 DQEYSRNSISRKIASLRSFYQFLLKNEAIQENPFSYVHMKKKQLRLPRFFYEKEMDALFE 123 Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD 239 + + E L +G+R S+ V + + K V Sbjct: 124 SAQGEQPLDLRNQALLEVLYGTGIRVSECANLTVDAVDFQASVLLVHGKGNKDRYVPFGS 183 Query: 240 GFMKLLAMT------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285 L F+N+ +++ T K+ + Sbjct: 184 FAQDALKDYLENSRALLMTKYQKKHPYVFVNHHGEQITPTGIEYVLNQLIKKSSLNAEIH 243 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 H +R AT + GA + G + + Y Sbjct: 244 PHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHV 283 >gi|327537504|gb|EGF24226.1| site-specific DNA tyrosine recombinase, XerD [Rhodopirellula baltica WH47] Length = 317 Score = 132 bits (332), Expect = 8e-29, Method: Composition-based stats. Identities = 42/276 (15%), Positives = 90/276 (32%), Gaps = 23/276 (8%) Query: 73 WLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--- 128 + E+ LA N+ ++ + + +T + V S Sbjct: 26 AVCDEFLVYLKRECHLADNTVAAYGRDMKRFVTWMDGRRPADLTITELSDFVASLHGEGL 85 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 P+S + + ++R FK+ + NP + K + +++ F S + Sbjct: 86 APASISRAIVAIRTFFKYLQLEGITVDNPAELLATQKAWQRMPGVLSPNEVEAFLSAVKK 145 Query: 189 GS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243 + R E L +G R S+ C V+ L + +++ V + ++ Sbjct: 146 SDSFWQRDRALLEVLYATGCRASEVCTLRVRDLTLDEKTLRCHGKGDKQRMVPIGGRAIR 205 Query: 244 LLAMTPIGKETFFINNDKQKMN------------ATQFSIWFKAKATKAGV--NKSAHGV 289 + + + + +++ Q K A +AG+ S H + Sbjct: 206 SIQLYLEESRHILADRNPGQIDELFLSRGGKALDRIQLWRLVKRYAKRAGISDEISPHSL 265 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 R AT GA ++ G ++ + YT Sbjct: 266 RHSFATHLLAGGADLRQVQEMLGHASIQTTQIYTHV 301 >gi|302335678|ref|YP_003800885.1| integrase family protein [Olsenella uli DSM 7084] gi|301319518|gb|ADK68005.1| integrase family protein [Olsenella uli DSM 7084] Length = 308 Score = 132 bits (332), Expect = 8e-29, Method: Composition-based stats. Identities = 53/302 (17%), Positives = 109/302 (36%), Gaps = 26/302 (8%) Query: 62 NSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKH 118 ++ L L+ + +L+ N+ ++ + R + +T Sbjct: 3 DATAAATPDLDALLRRFLSDLSVTRNLSENTIRAYGTDLAAYARWTRRQGVDPLDVTHSQ 62 Query: 119 IRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 +R+ + +++ + + L+++R L++W VR+ Y + ++ PK + T Sbjct: 63 LRAYLGELVRARYSSRTLNRRLSAIRTLYRWLVREGYTNKDAAAAIASPKVARTLPKTMT 122 Query: 176 KEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTG 230 D+ Q E G + R E L SG R S+ R V + + K G Sbjct: 123 DPDVCQLLGACDEDGVIGLRDRALIELLYASGARISEISRLDVGDIDRERRQVTLLGKGG 182 Query: 231 TIITVELPDGFMKLLAMTPIGKETF------------FINNDKQKMNATQFSIWFKAKAT 278 V L D + L + F++ ++M+A F+ + Sbjct: 183 KERIVPLYDMCIDELDAYLLTARPALVVRGEGASEALFVSTRGRRMSAAALREAFERRVR 242 Query: 279 KAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKN 335 AG++ + H +R AT GA + G ++ + YT DR++ + Sbjct: 243 LAGLDADITPHAMRHTYATELLSGGADLRSVQELLGHSSLSTTQIYTHLSVDRLKAAARQ 302 Query: 336 SR 337 + Sbjct: 303 AH 304 >gi|256851129|ref|ZP_05556518.1| tyrosine recombinase XerC [Lactobacillus jensenii 27-2-CHN] gi|260660553|ref|ZP_05861468.1| tyrosine recombinase XerC [Lactobacillus jensenii 115-3-CHN] gi|282932232|ref|ZP_06337676.1| tyrosine recombinase XerC [Lactobacillus jensenii 208-1] gi|297205994|ref|ZP_06923389.1| tyrosine recombinase XerC [Lactobacillus jensenii JV-V16] gi|256616191|gb|EEU21379.1| tyrosine recombinase XerC [Lactobacillus jensenii 27-2-CHN] gi|260548275|gb|EEX24250.1| tyrosine recombinase XerC [Lactobacillus jensenii 115-3-CHN] gi|281303627|gb|EFA95785.1| tyrosine recombinase XerC [Lactobacillus jensenii 208-1] gi|297149120|gb|EFH29418.1| tyrosine recombinase XerC [Lactobacillus jensenii JV-V16] Length = 302 Score = 132 bits (332), Expect = 8e-29, Method: Composition-based stats. Identities = 44/303 (14%), Positives = 107/303 (35%), Gaps = 26/303 (8%) Query: 69 TTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGV 123 T K L+ +++ + + + ++ + Q G + +++++ + + Sbjct: 1 MTKKSLLEQFKDYLAYERGYSNLTLTAYINDLKQAEDFWKNNGGFNGFEQVSSRDVEIFI 60 Query: 124 ESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 S +S + L+S++ L+K+ R+ VA++P +V ++ + + + +++ Sbjct: 61 TSLASAGLSQASQARKLSSLKSLYKFLTRRNLVAVDPTQTVSIHRKSKKLPEFFYEPEIK 120 Query: 181 QFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 + S + + FE +G+R S+ +Q + ++ I G Sbjct: 121 KVLDSLSASDKFTVRNKAMFELFYATGMRVSEVSNLTLQQVDFDVQMILVHGKGNKDRYV 180 Query: 237 LPDGFMKL-----------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--N 283 + K L F++N ++ + + K G+ N Sbjct: 181 PFGDYAKASLLRYLNEARSLFNPDENNHFVFLDNRGHQLTSRGIEYIMRKVFQKGGLSAN 240 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343 H +R AT + GA + G +++ + YT RL + Sbjct: 241 VHPHELRHTFATQMLNNGADLRSVQELLGHESLSTTQIYTHVT-MERLQKDYEKFFPRNE 299 Query: 344 DSD 346 D Sbjct: 300 GKD 302 >gi|300361600|ref|ZP_07057777.1| tyrosine recombinase XerC [Lactobacillus gasseri JV-V03] gi|300354219|gb|EFJ70090.1| tyrosine recombinase XerC [Lactobacillus gasseri JV-V03] Length = 307 Score = 132 bits (332), Expect = 8e-29, Method: Composition-based stats. Identities = 43/302 (14%), Positives = 105/302 (34%), Gaps = 27/302 (8%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-------GDFDYRKITTKHIRSGV 123 LI +++ ++ + + N+ S+ + D+ + G + + + Sbjct: 6 DKLIKQFQDYLNYERNYSKNTVSSYLNDLDEAKQFFKENGGFSGWDKVKSRDVEIFLQNL 65 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 ++ + ++ + ++S+R +++ V++E + +P ++ + + + + +++M+Q Sbjct: 66 ATQNRSRTTQARKMSSLRSFYRFLVKREVLENDPMQTISLRLGEKKLPQFFYEKEMRQVF 125 Query: 184 S----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238 + R FE +G+R S+ + + ++ I K V Sbjct: 126 DSLVGHDRLVVRNRAMFELFYATGMRLSEMASLKLDQIDFDLKIILVHGKGNKDRYVPFG 185 Query: 239 DGFMKLLAMTPIGKE-----------TFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285 + L F+NN QK+ + KAGV Sbjct: 186 KDALDALKEYRDDVRPALLGQNEDLGYVFLNNRGQKLTGRGIEYIMQQVFIKAGVGGKVH 245 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345 H +R AT + GA + G +++ + YT L + Sbjct: 246 PHMLRHSFATEMLNNGADLRSVQELLGHESLSTTQIYTHVT-MKHLQADYQKFFPRKDKK 304 Query: 346 DD 347 D+ Sbjct: 305 DE 306 >gi|161729088|ref|NP_220744.2| site-specific tyrosine recombinase XerD [Rickettsia prowazekii str. Madrid E] gi|34223091|sp|Q9ZDG8|XERD_RICPR RecName: Full=Tyrosine recombinase xerD gi|292571969|gb|ADE29884.1| Tyrosine recombinase XerD [Rickettsia prowazekii Rp22] Length = 311 Score = 132 bits (332), Expect = 8e-29, Method: Composition-based stats. Identities = 44/297 (14%), Positives = 102/297 (34%), Gaps = 36/297 (12%) Query: 73 WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRK--ITTKHIRSGVESRKH- 128 I+++ + +L+ NS +S++ + ITT +IR +E Sbjct: 2 EFIAQFLEMLLAERALSKNSILSYKRDLLDFQHYLAAQKISELNITTGNIRKWIEYLASN 61 Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 S + +++++ + + + + + NP L+++ PK + + + + ++ + Sbjct: 62 NLHARSINRKISTIKSYYAFLISENHTKFNPVLNIDLPKYQNKLPIILSIDQIKLILEYC 121 Query: 187 -----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--------FSIKTQKTGTII 233 EG + L SGLR S+ + + N K Sbjct: 122 SKDNTPEGIRLNAMINLLYASGLRVSELVSLKLADILTNNTSKGTVRKIFSVLGKGNKER 181 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQ-------------KMNATQFSIWFKAKATKA 280 + + D + + ++ F + M F+I K+ A Sbjct: 182 VIVINDQAVLSIIKYLEIRDFFINKAKSKNLIYLFPSSAVAGYMTRQNFAILLKSVALYT 241 Query: 281 GV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGI 333 G+ + S H +R A+ + GA + G + + YT + ++ + Sbjct: 242 GLNPEHVSPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHLHTNHLKKAL 298 >gi|126725541|ref|ZP_01741383.1| site-specific tyrosine recombinase XerC [Rhodobacterales bacterium HTCC2150] gi|126704745|gb|EBA03836.1| site-specific tyrosine recombinase XerC [Rhodobacterales bacterium HTCC2150] Length = 306 Score = 132 bits (332), Expect = 8e-29, Method: Composition-based stats. Identities = 40/289 (13%), Positives = 80/289 (27%), Gaps = 29/289 (10%) Query: 72 KWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSG 122 + + + A N+ ++ + G + + + IRS Sbjct: 9 RDALQNWLSHIKSLDDAAQNTLDAYTRDLTSFLSFLTQHFGETSGISALKAVGQRDIRSW 68 Query: 123 VESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + + + SA + L++++ ++W E LS PK + + RP + Sbjct: 69 MAFERGSGVSARSLARKLSAVKSFYRWFGEHEGFEPTAVLSARTPKFQKKLPRPIAPDAA 128 Query: 180 QQFKS-------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 + G + L GLR S++ K G Sbjct: 129 RAMIDTVPLQSEKNWVGLRDTAVVTVLYGCGLRISEALGLLGSDAPLPDVLRILGKGGKE 188 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKM-------NATQFSIWFKAKATKAGVNKS 285 V + + + + N + G+ + Sbjct: 189 RIVPVIPAAKRAVDEYIRACPHPIEADSPLFRGIRGGALNPRIIQGVVAKARMQLGLPAT 248 Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R AT +AG + G ++ + YT D RL Sbjct: 249 ATPHALRHSFATHLLEAGGDLRSIQELLGHASLSTTQAYT-AVDTARLM 296 >gi|291279466|ref|YP_003496301.1| site-specific DNA tyrosine recombinase XerD [Deferribacter desulfuricans SSM1] gi|290754168|dbj|BAI80545.1| site-specific DNA tyrosine recombinase XerD [Deferribacter desulfuricans SSM1] Length = 293 Score = 132 bits (331), Expect = 9e-29, Method: Composition-based stats. Identities = 46/274 (16%), Positives = 100/274 (36%), Gaps = 28/274 (10%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR---KITTKHIRSGVESRKHTP 130 L+ EY L+ N+ ++ S + Y + T + + ++ Sbjct: 12 LVEEY--------LSENTIKAYLSDVKAFLDFVKIKKYDIKSEDTVISYIKNLIKKSYSI 63 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----W 186 S ++ ++S+ V + + ++++ + NP L +++PK+ + ++++ + Sbjct: 64 ESILRKISSISVYYDYLIKEKVIDKNPVLLIDKPKKWFKLPDFLNEDEILKILDTVDKST 123 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLL 245 G + + L SG+R S+ V + I+ + G V + ++ L Sbjct: 124 PHGFRDYIIINMLYTSGMRISELVNIEVSNCDFRRGIIRIKGKGGKERFVPIHKKLIEEL 183 Query: 246 AMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293 + +F+ N K++ + A AG+ K S H R Sbjct: 184 NKYLEIRHNYFVKGRDNGYLFLNKFGNKLSREYCWKIVRKYAEMAGIKKKVSPHVFRHTF 243 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 AT GA + G ++ E YT+ D Sbjct: 244 ATHLLKNGADLRVIQMLLGHSSILTTEIYTQLDD 277 >gi|317489856|ref|ZP_07948349.1| tyrosine recombinase XerD [Eggerthella sp. 1_3_56FAA] gi|325829949|ref|ZP_08163407.1| tyrosine recombinase XerD [Eggerthella sp. HGA1] gi|316911011|gb|EFV32627.1| tyrosine recombinase XerD [Eggerthella sp. 1_3_56FAA] gi|325488116|gb|EGC90553.1| tyrosine recombinase XerD [Eggerthella sp. HGA1] Length = 297 Score = 132 bits (331), Expect = 9e-29, Method: Composition-based stats. Identities = 36/279 (12%), Positives = 76/279 (27%), Gaps = 25/279 (8%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGVESRK 127 L EY + + ++ + Q + K G + + I + Sbjct: 2 DELYREYLAYLRVERGSSPLTVSAYAADLKDYAQFLEKRGVESLDDVDREVIVAYESDLF 61 Query: 128 HTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 S+ + ++ ++ ++ VR+ Y NP +++ PK + + S Sbjct: 62 GRGYAASTVDRHVSVLKGFHRFLVREGYARRNPADTIQLPKAPDRLPDVLSVAQVDAMLS 121 Query: 185 FW----SEGSQPRLAFEFLLYSGLRCSDSCRAG-VQHLQNNIFSIKTQKTGTIITVELPD 239 + + E L GLR S+ + + K + Sbjct: 122 RPLDEGPLALRNQAILEVLYGCGLRVSECTGLDLGDAILEEGYLHILGKGNKERIAPISG 181 Query: 240 GFMKLLAMTPIGKETFFINNDKQ------------KMNATQFSIWFKAKATKAGV-NKSA 286 ++ L + + + ++ GV N Sbjct: 182 AALRALRDYLERGRPELVRSYAKSTSAVFLNARGGRLTRQSVHSLVAEAGRFIGVANLHP 241 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 H +R AT GA + G + + YT Sbjct: 242 HTLRHSFATHMLAGGADLRVIQEILGHSDISTTQIYTHV 280 >gi|312130041|ref|YP_003997381.1| integrase family protein [Leadbetterella byssophila DSM 17132] gi|311906587|gb|ADQ17028.1| integrase family protein [Leadbetterella byssophila DSM 17132] Length = 282 Score = 132 bits (331), Expect = 9e-29, Method: Composition-based stats. Identities = 45/269 (16%), Positives = 97/269 (36%), Gaps = 14/269 (5%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP--- 130 + + L+ ++ S++ +Q+ D +I+T+ +R+ V S Sbjct: 2 VDFFLSHLQHERRLSPHTIKSYKLDLEQLHTFLNGIDPSQISTEDLRAWVVSLSEDGLEN 61 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-----FKSF 185 S + L S R F + R++ ++ NP ++ K + + Q + Sbjct: 62 RSINRKLASARAFFTFLQRKKIISQNPADLIKSLKTPKPLPVFLEERNTQDLFEQLEFTE 121 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS---IKTQKTGTIITVELPDGFM 242 EG + +L E L +G+R S+ V+ L+N+ +++ + L D Sbjct: 122 DFEGLRDKLLLELLYGTGIRLSELISIQVKDLENDRVKVLGKRSKYRIIPLHRTLQDLIK 181 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300 + L + P + + + + K + S H +R AT + Sbjct: 182 RYLELHPKNDTHLLLTDKGEALYPVFVQRKVKHYLQQISTLTKTSPHVLRHTFATHLLNR 241 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329 GA + + G + + YT + + Sbjct: 242 GADLNAIKELLGHANLSATQIYTHNSIQK 270 >gi|256965045|ref|ZP_05569216.1| phage integrase [Enterococcus faecalis HIP11704] gi|307273143|ref|ZP_07554389.1| tyrosine recombinase XerC [Enterococcus faecalis TX0855] gi|256955541|gb|EEU72173.1| phage integrase [Enterococcus faecalis HIP11704] gi|306510128|gb|EFM79152.1| tyrosine recombinase XerC [Enterococcus faecalis TX0855] Length = 299 Score = 132 bits (331), Expect = 9e-29, Method: Composition-based stats. Identities = 36/280 (12%), Positives = 87/280 (31%), Gaps = 27/280 (9%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR- 126 L + Y + ++ +++ G+ +Y + +R+ + Sbjct: 6 WPELFARYL--IVERGYSEKTKKAYQEDIQHFFSFLKTSGNDNYLTVEHLDVRAYLSELY 63 Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 +++ +S + + S+R +++ ++ E + NP V K++ R + +++M Sbjct: 64 DQEYSRNSISRKIASLRSFYQFLLKNEAIQENPFSYVHMKKKELRLPRFFYEKEMDALFE 123 Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD 239 + + E L +G+R S+ V + + K V Sbjct: 124 SAQGEQPLDLRNQALLEVLYGTGIRVSECANLTVDAVDFQASVLLVHGKGNKDRYVPFGS 183 Query: 240 GFMKLLAMT------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285 L F+N+ +++ T K+ + Sbjct: 184 FAQDALKDYLENGRALLMTKYQKKHPYVFVNHHGEQITPTGIEYVLNQLIKKSSLNAEIH 243 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 H +R AT + GA + G + + Y Sbjct: 244 PHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHV 283 >gi|229086384|ref|ZP_04218560.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-44] gi|228696900|gb|EEL49709.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-44] Length = 302 Score = 132 bits (331), Expect = 9e-29, Method: Composition-based stats. Identities = 43/287 (14%), Positives = 95/287 (33%), Gaps = 27/287 (9%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126 +K L+ + + + + S+++ + ++ G + +T +R + + Sbjct: 6 VKKLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYVDVRLYLTTL 65 Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----M 179 S + ++S+R L+++ +R+ Y NP PK++ + E+ Sbjct: 66 HDEKLARKSVARKVSSLRSLYRFLMREGYREDNPFALASLPKKEWSIPKFLYVEELEKLF 125 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238 + G + + E + +G+R S+ + ++ +I T K + Sbjct: 126 EVSDVKTPLGQRNQALLELMYATGIRVSECVSLQFTDIDFSVGTILVTGKGKKQRYIPFG 185 Query: 239 DGFMKLLAMTPI------------GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284 L + F+N + KA + Sbjct: 186 SYAQDALTTYIENGRKQLAKKTEEHSQMVFLNAKGAPLTDRGVRYILNDLIKKASLTMKI 245 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 S H +R AT D GA + G + + + YT + RL Sbjct: 246 SPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTH-VSKERL 291 >gi|227524410|ref|ZP_03954459.1| phage integrase family site specific recombinase [Lactobacillus hilgardii ATCC 8290] gi|227088641|gb|EEI23953.1| phage integrase family site specific recombinase [Lactobacillus hilgardii ATCC 8290] Length = 401 Score = 132 bits (331), Expect = 9e-29, Method: Composition-based stats. Identities = 41/357 (11%), Positives = 97/357 (27%), Gaps = 47/357 (13%) Query: 15 RTRHGKIIYYFRKG--HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 R + Y F G +G+R R+ A + + ++ Sbjct: 23 RKKGNNWYYAFDTGTLNGKRSRIERSGGKKKKQAEAPLRQALQKYENDGSVAKLTNMNVQ 82 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 + ++ L N++I++ + II K G+F R I +++ V T Sbjct: 83 QYFMYWYENYVQRELKPNTQINYLNIINKYIIPKIGNFRIRSIGPAALQNLVNDLGET-K 141 Query: 132 SAIQFLTSM---------RVLFKWA--VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 A + + + ++ + I + + + ++ T + Sbjct: 142 LAKHTVQIIVMVIKEGFKKAVYPYQLIKEDPARYIIMPKYHDDERITRKKLKIITMNQYE 201 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------- 231 Q S + + + +G+R + C ++ N +I+ ++ Sbjct: 202 QILSITPPSNPFYIPLQIAFGTGMRRGEVCGLTWTNVDLNGHTIEVKQAMMQESKGKFSI 261 Query: 232 ----------------------IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269 + + + Sbjct: 262 VTPKTTSSYRTISIGESLVDLLRQHKKHQMEERLRYGQYYHESNFVCTKENGIPVTPNTI 321 Query: 270 SIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKG 325 + G + H +R AT+ + GA ++ A G + TY+ Sbjct: 322 KYQCDRIQKELGFPFNFHSLRHTHATMLLEHGANIKDIQARLGHSRIATTMDTYSHV 378 >gi|229162767|ref|ZP_04290724.1| Tyrosine recombinase xerC [Bacillus cereus R309803] gi|228620649|gb|EEK77518.1| Tyrosine recombinase xerC [Bacillus cereus R309803] Length = 302 Score = 132 bits (331), Expect = 9e-29, Method: Composition-based stats. Identities = 42/284 (14%), Positives = 93/284 (32%), Gaps = 28/284 (9%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKH- 128 L Y + + + + S+++ + ++ G + +T +R + + Sbjct: 11 QLFVGYLQIE--RNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYADVRLYLTTLHDE 68 Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQF 182 S + ++S+R L+++ +R+ Y NP PK++ + E+ + Sbjct: 69 KLARKSVARKVSSLRSLYRFLMREGYRTDNPFALASLPKKELSIPKFLYAEELEELFEVS 128 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGF 241 + G + + E + +G+R S+ + + + +I K + Sbjct: 129 DTETPLGQRNQALLELMYGTGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFGSYA 188 Query: 242 MKLLAMTPI------------GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287 L F+N + + KA + S H Sbjct: 189 QDALITYIENGRKQLANKTEEHSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRISPH 248 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +R AT D GA + G + + + YT + RL Sbjct: 249 MLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTH-VSKERL 291 >gi|212695398|ref|ZP_03303526.1| hypothetical protein BACDOR_04947 [Bacteroides dorei DSM 17855] gi|212662033|gb|EEB22607.1| hypothetical protein BACDOR_04947 [Bacteroides dorei DSM 17855] Length = 308 Score = 132 bits (331), Expect = 9e-29, Method: Composition-based stats. Identities = 51/306 (16%), Positives = 111/306 (36%), Gaps = 25/306 (8%) Query: 65 RKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRS 121 ++ T ++ +Y++ SL+ N+ ++ + D+++ + + + +++ Sbjct: 2 KRTEKT-DKILVKYKQYLKLEKSLSDNTVDAYLTDLDKLLAYLTLENINILDVRLENLED 60 Query: 122 GVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 P S + L+ +R +++ + ++Y+ +P +E P+ + T E+ Sbjct: 61 FSAGLHDIGIHPRSQARILSGIRSFYRFLIMEDYLESDPTELLESPQTGFKLPEVMTVEE 120 Query: 179 MQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTII 233 + G+ + R E L GLR S+ C + L F K Sbjct: 121 IDLLIGSIDRGTKEGQRNRAILETLYSCGLRVSELCNLKLSELYFEEGFIKVEGKGSKQR 180 Query: 234 TVELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN 283 V + +K + + + FI+N + ++ K A + G+ Sbjct: 181 LVPISPRAIKEIRLYFTDRNLMKIKPGFEDFVFISNFGKNISRIMVFHIIKELAERIGLK 240 Query: 284 K--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 K S H R AT + GA + G +++ E YT DR L + Sbjct: 241 KKISPHTFRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYTH-IDRNMLRSEIIEHHPR 299 Query: 342 VVDSDD 347 + + Sbjct: 300 NIKFRE 305 >gi|325268524|ref|ZP_08135154.1| integrase/recombinase XerD [Prevotella multiformis DSM 16608] gi|324989052|gb|EGC21005.1| integrase/recombinase XerD [Prevotella multiformis DSM 16608] Length = 310 Score = 132 bits (331), Expect = 9e-29, Method: Composition-based stats. Identities = 47/276 (17%), Positives = 93/276 (33%), Gaps = 23/276 (8%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVE---S 125 K ++ +R+ + N+ ++ D+++R +T + + Sbjct: 8 KDIVGRFRRYLKLEKGCSPNTVDAYLHDVDKLLRYLAGEQVPVTDVTLEQLEHFAASVSD 67 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 S + L+ +R +++ V Y+ +P +E PK+ + ++ + Sbjct: 68 LGIGARSLARILSGVRQFYRFLVLDGYMEADPTELLESPKQPDHLPEVLSTAEVDLLEQA 127 Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDG 240 EG + R E L GLR S+ + L ++ V + Sbjct: 128 VDLTKWEGHRNRAIIEVLFSCGLRVSELTHLKLSDLYREEQYVRVMGKGSKERLVPISPR 187 Query: 241 FMKLLAMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKAGVNKS--AHG 288 + L + I N + T I K A +AG+ K+ H Sbjct: 188 ALDELDCWFADRNVMKIKPGEEDYVFLNRRGHHLTRTMILIMIKRYAAEAGIRKTISPHT 247 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT + GA + A G +++ E YT Sbjct: 248 LRHSFATSLLEGGADLRAIQAMLGHESIGTTEIYTH 283 >gi|255975766|ref|ZP_05426352.1| phage integrase [Enterococcus faecalis T2] gi|307277985|ref|ZP_07559069.1| tyrosine recombinase XerC [Enterococcus faecalis TX0860] gi|312899495|ref|ZP_07758825.1| tyrosine recombinase XerC [Enterococcus faecalis TX0470] gi|255968638|gb|EET99260.1| phage integrase [Enterococcus faecalis T2] gi|306505382|gb|EFM74568.1| tyrosine recombinase XerC [Enterococcus faecalis TX0860] gi|311293365|gb|EFQ71921.1| tyrosine recombinase XerC [Enterococcus faecalis TX0470] Length = 299 Score = 132 bits (331), Expect = 9e-29, Method: Composition-based stats. Identities = 36/280 (12%), Positives = 87/280 (31%), Gaps = 27/280 (9%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR- 126 L + Y + ++ +++ G+ +Y + +R+ + Sbjct: 6 WPELFARYL--IVERGYSEKTKKAYQEDIQHFFSFLKTSGNDNYLTVEHLDVRAYLSELY 63 Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 +++ +S + + S+R +++ ++ E + NP V K++ R + +++M Sbjct: 64 DQEYSRNSISRKIASLRSFYQFLLKNEAIQENPFSYVHMKKKQLRLPRFFYEKEMDALFE 123 Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD 239 + + E L +G+R S+ V + + K V Sbjct: 124 SAQGEHPLDLRNQALLEVLYGTGIRVSECANLTVDAVDFQASVLLVHGKGNKDRYVPFGS 183 Query: 240 GFMKLLAMT------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285 L F+N+ +++ T K+ + Sbjct: 184 FAQDALKDYLENGRALLMTKYQKKHPYVFVNHHGEQITPTGIEYVLNQLIKKSSLNAEIH 243 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 H +R AT + GA + G + + Y Sbjct: 244 PHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHV 283 >gi|116629573|ref|YP_814745.1| integrase [Lactobacillus gasseri ATCC 33323] gi|282852048|ref|ZP_06261406.1| tyrosine recombinase XerC [Lactobacillus gasseri 224-1] gi|116095155|gb|ABJ60307.1| tyrosine recombinase XerC subunit [Lactobacillus gasseri ATCC 33323] gi|282556808|gb|EFB62412.1| tyrosine recombinase XerC [Lactobacillus gasseri 224-1] Length = 307 Score = 132 bits (331), Expect = 9e-29, Method: Composition-based stats. Identities = 43/302 (14%), Positives = 105/302 (34%), Gaps = 27/302 (8%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-------GDFDYRKITTKHIRSGV 123 LI +++ ++ + + N+ S+ + D+ + G + + + Sbjct: 6 DKLIKQFQDYLNYERNYSKNTVSSYLNDLDEAKQFFKENGGFGGWDKVKSRDVEIFLQSL 65 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 ++ + ++ + ++S+R +++ V++E + +P ++ + + + + +++M+Q Sbjct: 66 AAQNRSRTTQARKMSSLRSFYRFLVKREVLENDPMQTISLRLGEKKLPQFFYEKEMRQVF 125 Query: 184 S----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238 + R FE +G+R S+ + + ++ I K V Sbjct: 126 DSLAGHDKLVVRNRAMFELFYATGMRLSEMASLKLDQIDFDLKIILVHGKGNKDRYVPFG 185 Query: 239 DGFMKLLAMTPIGKE-----------TFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285 + L F+NN QK+ + KAGV Sbjct: 186 KDALDALREYRDDVRLALLGQNEDLGYVFLNNRGQKLTGRGIEYIMQQVFIKAGVGGKVH 245 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345 H +R AT + GA + G +++ + YT L + Sbjct: 246 PHMLRHSFATEMLNNGADLRSVQELLGHESLSTTQIYTHVT-MKHLQADYQKFFPRKDKK 304 Query: 346 DD 347 D+ Sbjct: 305 DE 306 >gi|298505931|gb|ADI84654.1| integrase/recombinase XerD [Geobacter sulfurreducens KN400] Length = 295 Score = 132 bits (331), Expect = 9e-29, Method: Composition-based stats. Identities = 47/270 (17%), Positives = 92/270 (34%), Gaps = 24/270 (8%) Query: 85 GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLT 138 LA NS S+ + + + D I H+ + K + S + L+ Sbjct: 16 KGLARNSVESYARDLSRYLGYVEQHAGGDPAAIRPLHVADFLAHLKESGLGARSRARALS 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRL 194 ++R+ ++ + + Y NP +E P+ + + T +++ + + R Sbjct: 76 AVRMFHRFLLVEGYAETNPTSIIEAPRVLAKLPQVLTGREVEMLLAAPAGDAPIEVRDRA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMTPIGKE 253 E L +GLR S+ + + + + K V + + + + Sbjct: 136 MLELLYATGLRVSELVGLRTRDVNTSAGYLMTVGKGEKERLVPMGESACAAVVLYLSSAR 195 Query: 254 TFFINNDKQK----------MNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAG 301 T + M F K ++ +AG+ S H +R AT + G Sbjct: 196 TQLGRGGESPFLFLSRLGERMTRQAFWNIIKKRSRQAGILKGISPHTLRHSFATHLLENG 255 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRL 331 A + A G + + YT R RL Sbjct: 256 ADLRSVQAMLGHADLSTTQIYTHVT-RERL 284 >gi|94264969|ref|ZP_01288740.1| Tyrosine recombinase XerC [delta proteobacterium MLMS-1] gi|93454572|gb|EAT04850.1| Tyrosine recombinase XerC [delta proteobacterium MLMS-1] Length = 339 Score = 132 bits (331), Expect = 9e-29, Method: Composition-based stats. Identities = 40/319 (12%), Positives = 96/319 (30%), Gaps = 62/319 (19%) Query: 68 PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF----------------- 109 ++ I + + + ++ S++ + + +G Sbjct: 2 DGSVGRHIDAFLRWLRVEKGYSGHTVASYQRDLREFVASAGRRSAPAPTAVGRKGRGRGR 61 Query: 110 ---------------DYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEY 152 D ++ +R+ V S ++ SS + L+++R F++ + Sbjct: 62 AAAAPLPAEDPAAELDVAQLDATRVRAFVYSLHGRNKSSSVARKLSALRSFFRFLRKNGI 121 Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ----PRLAFEFLLYSGLRCSD 208 + +P ++ PK + + +++ G + R E L +GLR S+ Sbjct: 122 INDDPAAAIAAPKGEGYLPVVLSVDEVFSLLEMPGAGDRFAARDRAILELLYATGLRVSE 181 Query: 209 SCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFINNDKQ----- 262 + L ++ V + + + ++ Q Sbjct: 182 LAGLDLAQLDLADGMVRVVGKGNKERLVPMGTAAVAAIEAYLPQRQVLLRQTAGQQKEGK 241 Query: 263 ---------------KMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305 ++ + K A +AG+ S H +R AT + GA Sbjct: 242 KARGADPLLVNSRGGRLTSRSIERLVKMYAERAGIAARVSPHALRHSFATHLLEMGADLR 301 Query: 306 ELMATYGWKTVDQAETYTK 324 + G ++ + YT Sbjct: 302 VVQELLGHASLSTTQRYTH 320 >gi|254167351|ref|ZP_04874203.1| site-specific recombinase, phage integrase family protein [Aciduliprofundum boonei T469] gi|197623614|gb|EDY36177.1| site-specific recombinase, phage integrase family protein [Aciduliprofundum boonei T469] Length = 279 Score = 132 bits (331), Expect = 9e-29, Method: Composition-based stats. Identities = 44/265 (16%), Positives = 93/265 (35%), Gaps = 19/265 (7%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134 + ++++ + N+ + + ++R IT + + Sbjct: 8 LEKFKEYLRGEKRSENTIKEYAHFISDMLRYF-KKRAEDITPGDLNKYKMYLSTKRKYSK 66 Query: 135 QFL----TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 L ++R FK+ ++ ++ PKR + + +++++++ SE Sbjct: 67 NSLYLATKAIRSYFKYKN------LDTAKNLSSPKRPKQMPKYLSEDEVKRLIEASSENP 120 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAMT 248 + L YSGLR S+ C ++ + N +++ K V + ++ L Sbjct: 121 RDYAIISLLAYSGLRVSELCNLKIEDVDFNERIVYVRSGKGDKDRIVVVSPRVIEALQNY 180 Query: 249 PIGKETFFIN----NDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302 +E K++ Q K A KAG+ K + H +R AT G Sbjct: 181 LYTREDDMEYLFASQKSNKISRVQVFRIVKKYAEKAGIKKEVTPHVLRHTLATTLLRRGV 240 Query: 303 TAHELMATYGWKTVDQAETYTKGAD 327 + G +V + YT D Sbjct: 241 DIRFIQQFLGHSSVATTQIYTHVDD 265 >gi|196250937|ref|ZP_03149621.1| integrase family protein [Geobacillus sp. G11MC16] gi|196209578|gb|EDY04353.1| integrase family protein [Geobacillus sp. G11MC16] Length = 301 Score = 132 bits (331), Expect = 9e-29, Method: Composition-based stats. Identities = 38/294 (12%), Positives = 95/294 (32%), Gaps = 30/294 (10%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKIT----TKHIRS 121 + I E+ + ++N+ + IT + I+ Sbjct: 3 FRQAIDEFVLYLQIEKNYSLNTVDGYAYDLRCFENFLIQHGYSVQLNDITKTHVRRFIQH 62 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT-----K 176 + P + + ++ ++ K+ V++ + + + ++ PK ++ + K Sbjct: 63 QITKENVKPRTIYRRISCLKSFSKYCVKENLIDSDFMIGIDTPKTDSKLPTYMSLSELRK 122 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 + + L F+ L +G+R S+ + + + +I+ G + Sbjct: 123 LFHFLEQDNSRMAMRNHLLFKLLATTGMRRSEIVELTWEQIDLSNNTIRIYGKGKKERLL 182 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKM---------NATQFSIWFKAKATKAGVN---K 284 + L + +G + + Q + N FK KAG+ Sbjct: 183 PLHPMVVPLIKSYMGSLEEYQLHPSQPVFLNKNGKKLNPRGLHKIFKEILQKAGLPPQRF 242 Query: 285 SAHGVRKFSATISADAG---ATAHELMATYGWKTVDQAETYTKG-ADRIRLGIK 334 S H +R AT+ + G +++ + YT ++ + I+ Sbjct: 243 SLHHLRHTFATLLIQENKENVDLRTVQELLGHESLVTTQVYTHVDFEQKKKAIE 296 >gi|297584490|ref|YP_003700270.1| tyrosine recombinase XerD [Bacillus selenitireducens MLS10] gi|297142947|gb|ADH99704.1| tyrosine recombinase XerD [Bacillus selenitireducens MLS10] Length = 296 Score = 132 bits (331), Expect = 9e-29, Method: Composition-based stats. Identities = 45/269 (16%), Positives = 101/269 (37%), Gaps = 24/269 (8%) Query: 85 GSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFL 137 L+ + ++ + G F ++ + KH+ ++ + SS + L Sbjct: 16 KGLSTKTIEAYAGDLSGYLTFLQDTYGIFSWKDVNKKHVLHYLQWMNQSGKASSSISRTL 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPR 193 ++++ L + + ++ + NP + +ERP++ + +++ S + Sbjct: 76 SAIKSLHVFLMLEKEMDENPAVHIERPRKPAILPKTLAISEVEALFSAAEGNRPIDIRTV 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLL------- 245 E L +G+R S+ C ++ L + +K T + L + + + Sbjct: 136 AMLEVLYSTGMRVSELCALELKDLNLEMGFVKCTGKGNTERIIPLGEFATEAIRIYLDHA 195 Query: 246 ---AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 M F+N+ +++ F ++ ATKAG+ K S H +R AT + Sbjct: 196 RPVMMKDKEHHDLFVNHHGHRISRQGFWKLIRSLATKAGIQKEISPHTLRHSFATHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329 GA + G + + YT + Sbjct: 256 GADLRSVQEMLGHSDISTTQIYTHISQTR 284 >gi|121997131|ref|YP_001001918.1| phage integrase family protein [Halorhodospira halophila SL1] gi|121588536|gb|ABM61116.1| phage integrase family protein [Halorhodospira halophila SL1] Length = 379 Score = 132 bits (331), Expect = 9e-29, Method: Composition-based stats. Identities = 57/361 (15%), Positives = 114/361 (31%), Gaps = 29/361 (8%) Query: 6 RLPPFVTKERTRHGKIIYYFRKGHG----RRIRLPYPHESTFIPAYMSALTGST-----P 56 R P + E G Y++R + R +L E + A A ++ Sbjct: 24 RKAPGLIVEVRPTGSATYFYRYRNHAGLTRSCKLARFREISLKDARSLAREKASIVASGH 83 Query: 57 KREYINSPRKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115 + + R+ TLK E Y A + + ++ + G I Sbjct: 84 DPQEEKNTRRASPTLKEYAEECYLPHAKSYKRSWKTDEIMLNH--HALPTLGTKKMSDIN 141 Query: 116 TKHIRSGVESRKHT---PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEG 170 + + + K PS+ + LT + +FK V NP ++RP + Sbjct: 142 RNQVEAIMNDMKSRGYAPSTVDRVLTLISYMFKVAMDNEIPGVVSNPTEKIKRPVIDNKI 201 Query: 171 IRPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228 T+E++ + + P + + +G R ++ A + + K Sbjct: 202 ENYLTREEVNRMLEAARRRNHPHIYSIIRMAVLTGARKAEILSARFEDFDLDNKIWNIPK 261 Query: 229 ----TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN- 283 + +I E +K L F + FKA +G++ Sbjct: 262 GKNGSRKVILAEKAVQMVKELPKQEGTDLLFPQPGTDKP--YQCIQKPFKAVLRDSGIDE 319 Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342 H +R A++ G +E+ G + Y + + +S R++ Sbjct: 320 SVRFHDLRHSYASLLVQGGVNIYEVKELLGHSQITTTMRYAHLSAQG--LRNHSNRLAET 377 Query: 343 V 343 + Sbjct: 378 I 378 >gi|262038210|ref|ZP_06011604.1| tyrosine recombinase XerD [Leptotrichia goodfellowii F0264] gi|261747791|gb|EEY35236.1| tyrosine recombinase XerD [Leptotrichia goodfellowii F0264] Length = 315 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 45/263 (17%), Positives = 88/263 (33%), Gaps = 17/263 (6%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--SRKHTPSSAIQFLTSMRV 142 + N+ +E I + I +E SR+ +S ++ + S+R Sbjct: 45 KGSSKNTVAGYERDLKIFFDYI-QKSATDIKEEDIYEYIEEISRELKRNSVLRKIASIRT 103 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT---KEDMQQFKSFWSEGSQPRLAFEFL 199 +K+ + V +P ++ KR+ + + EG + RL +FL Sbjct: 104 FYKFCYLNKMVKEDPTGMIKSLKREKRLPEVLNLKEVKTIIDNIGHTPEGMRDRLIIKFL 163 Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKT------QKTGTIITVELPDGFMKLLAMTPIGKE 253 + +G R S+ ++ ++N + + I L + ++ + Sbjct: 164 IATGARVSEILNLNIKDVENQGYEFIKVLGKGSKYRIVPIYESLENEIKDYISNYRPKLK 223 Query: 254 TFFINNDKQKMNAT-QFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMAT 310 + F K A AG+ K+ H R AT+ GA + Sbjct: 224 GSESSFKLFPDTRRENFWKRLKKTAKDAGIEKNVYPHIFRHSVATVLLSNGADIRIVQEI 283 Query: 311 YGWKTVDQAETYTKG--ADRIRL 331 G + E YT +D R+ Sbjct: 284 LGHANISTTEIYTHVEKSDLKRI 306 >gi|261417486|ref|YP_003251169.1| integrase family protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373942|gb|ACX76687.1| integrase family protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327853|gb|ADL27054.1| site-specific recombinase, phage integrase family [Fibrobacter succinogenes subsp. succinogenes S85] Length = 297 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 37/270 (13%), Positives = 80/270 (29%), Gaps = 19/270 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSG----VESRK 127 + + +L+ + S++ I + D + + + + + Sbjct: 8 LDAFLSHLGVERNLSPVTIQSYQEDLRHFIAWLDENGIDLKDLQPEKLDEFLTLTAGQEE 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 ++P+S + +S+R K+ Q + + PK + T+E++ + Sbjct: 68 YSPTSVARHFSSLRGFLKYMQIQGEYDYSTESMLATPKLGHYLPQYLTREEIDSVFESAA 127 Query: 188 EG---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMK 243 G + E + GLR S++ + + + K V L + Sbjct: 128 NGKNPLRDTALIELMYSGGLRISEALGIKLSQIDLENEWLMPIGKGNKQRLVPLGSKAKE 187 Query: 244 LLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSAT 295 L + +N + M+ + S H R AT Sbjct: 188 NLRAWIEEGRPLTHPTTDNIILNAHGKPMSRMGAWKIVQLHTMHLSKQVSPHTFRHSFAT 247 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKG 325 +AG L G + + YT Sbjct: 248 HCLEAGMDLRVLQELLGHADISTTQIYTHV 277 >gi|218258194|ref|ZP_03474596.1| hypothetical protein PRABACTJOHN_00250 [Parabacteroides johnsonii DSM 18315] gi|218225689|gb|EEC98339.1| hypothetical protein PRABACTJOHN_00250 [Parabacteroides johnsonii DSM 18315] Length = 301 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 48/295 (16%), Positives = 93/295 (31%), Gaps = 24/295 (8%) Query: 75 ISEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKH--- 128 + Y+ L+ NS ++ + D++ Y +T ++ V Sbjct: 8 VERYKTYLRLEKALSANSIDAYLTDLDKLTNFVESEGKKYADVTYDDLQQFVARLHDIGI 67 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-- 186 P S + ++ ++ +++ Y+ +P +E PK + T ++ Sbjct: 68 HPRSQARIISGIKSFYRFLFLDNYITTDPTELLESPKIGLKLPEVLTVNEINSILDTIDL 127 Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFMK 243 EG + R E L GLR S+ + + F K V + + +K Sbjct: 128 TLPEGQRNRAMLEVLYSCGLRVSELVSLRFTDVYFDEGFIKVEGKGSKQRLVPISETAIK 187 Query: 244 LLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAGVNK--SAHGVRK 291 + + + + + + K + AG+ K S H R Sbjct: 188 EIKNYLYDRNHVPVKKGFEDILFLSRRGTALSRIMVFHIIKQQTEMAGIKKNVSPHTFRH 247 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346 AT + GA + G + + E YT DR L + D Sbjct: 248 SFATHLLEGGANLLAIQEMLGHEKITTTEIYTH-IDRQFLRKEILEHHPRSKPRD 301 >gi|317405888|gb|EFV86170.1| integrase/recombinase [Achromobacter xylosoxidans C54] Length = 327 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 52/326 (15%), Positives = 95/326 (29%), Gaps = 51/326 (15%) Query: 59 EYINSPRKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGD--------- 108 +P + I + + L+ N+ ++ R D Sbjct: 2 PDSRAPLASQADIDAFIDAVWLED----GLSANTLAAYRRDLTGFARWLEDPEAYAREMA 57 Query: 109 -----------------FDYRKITTKHIRSGVESRK--HTPSSAIQFLTSMRVLFKWAVR 149 + I + R ++A + L ++R + WA+R Sbjct: 58 DRYGDAASAHALPAGPAKALAEAGKADIEAWFAFRHEETRATTANRRLAALRRFYAWALR 117 Query: 150 QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLR 205 + A +PCL++ K+ + +++ + G + R E L +GLR Sbjct: 118 EHRAAHDPCLTLVAAKQPPRLPKTLSEQQVDALLRAPDLNEPRGLRDRAMLEMLYATGLR 177 Query: 206 CSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPDGFMKLLAMTPIGKETF-------- 255 S+ + N ++ K G V L + Sbjct: 178 VSELVGVRALDVSLNEGVVRVVLGKGGKDRLVPLGAEAAHWIDQYMKTARPELAAGRVSD 237 Query: 256 --FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATY 311 FI + M+ F K A AGV S H +R AT + GA + Sbjct: 238 ALFITGRAEAMSRQAFWQLVKKYAVLAGVHAPLSPHVLRHAFATHLLNHGADLRVVQMLL 297 Query: 312 GWKTVDQAETYTKGADRIRLGIKNSR 337 G + + YT A + + Sbjct: 298 GHADISTTQIYTHVARERLKALHAAH 323 >gi|65321158|ref|ZP_00394117.1| COG4974: Site-specific recombinase XerD [Bacillus anthracis str. A2012] Length = 302 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 43/287 (14%), Positives = 95/287 (33%), Gaps = 27/287 (9%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126 +K L+ + + + + S+++ + ++ G + IT +R + + Sbjct: 6 VKKLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFMEREGISSFLDITYADVRLYLTTL 65 Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----M 179 S + ++S+R L+++ +R+ Y NP PK++ + E+ Sbjct: 66 HDEKLARKSVARKVSSLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELF 125 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238 + + G + + E + +G+R S+ + + + +I K + Sbjct: 126 EVSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFG 185 Query: 239 DGFMKLLAMTPI------------GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284 L F+N + + KA + Sbjct: 186 SYAQDALITYIENGRKQLAEKTEEQSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRI 245 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 S H +R AT D GA + G + + + YT + RL Sbjct: 246 SPHILRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTH-VSKERL 291 >gi|257887261|ref|ZP_05666914.1| phage integrase [Enterococcus faecium 1,141,733] gi|257823315|gb|EEV50247.1| phage integrase [Enterococcus faecium 1,141,733] Length = 378 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 43/359 (11%), Positives = 103/359 (28%), Gaps = 43/359 (11%) Query: 15 RTRHGKIIYYFRK--GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 R R + YYF G R ++ T A + + E T +K Sbjct: 6 RKRGKRWYYYFEDINDDGSRKKVEKVGGDTRPEAEAALRKVLSDIDETGQYFLGTDTRVK 65 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 + + + +L N+ ++ I G ++ +++ + + Sbjct: 66 QYLDFWMEEYVKLNLKYNTYENYRFTIKNHINGYLGKKKLTDLSPALLQNFINAEFKKGY 125 Query: 132 SAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI------RPWTKEDMQQF 182 S + ++ AV + + + + E + + ED Sbjct: 126 SKKTMTITHSVLKNALNMAVYPWGLIKQNPMLYVKIPKYEERPTTKKDLKIISLEDFDHM 185 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----------------IFSIKT 226 EG + Y+G+R + C ++ + Sbjct: 186 LEITPEGHPFYIPLNIGFYTGMRVGEVCGLTWDNVDFSNGTITVEKQMVKNDGAWVYGTP 245 Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--------------NATQFSIW 272 + + + T+ + + +L + + K + + Sbjct: 246 KTSSSNRTIFIGQTLLAILKKHKKQQLENRMKYGKLYIDSNAVCTKEYGELVTPSVVKWN 305 Query: 273 FKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330 + + ++ + H +R AT+ + GA E+ G + TY+ D++R Sbjct: 306 TRRISNALSLSFNFHSLRHTHATLLLENGAKMKEISDRLGHSRISITMDTYSHVTDKMR 364 >gi|84517230|ref|ZP_01004585.1| Phage integrase [Loktanella vestfoldensis SKA53] gi|84508905|gb|EAQ05367.1| Phage integrase [Loktanella vestfoldensis SKA53] Length = 445 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 46/353 (13%), Positives = 101/353 (28%), Gaps = 24/353 (6%) Query: 6 RLPPFVTKERTRHGKIIYYFR----KGHGRRIRLPYPHESTFIPAYMSALTGSTPK---- 57 R + E G + YY R + R I+L + T A Sbjct: 28 RRVKGLVLEVRTSGGMTYYMRYTDDRSKTRYIKLANVGDITLPQARGLCRQHRNKLALGI 87 Query: 58 -REYINSPRKKPTTLKWLI-SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115 + ++ T + Y A + + + + + G +IT Sbjct: 88 DPLAERAVKRLVPTFGDFVRERYLPFAQANKRSWKTDETLART--HLTPQLGTMHMDEIT 145 Query: 116 TKHI---RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYV-----AINPCLSVERPKRK 167 + + + P+S + L +R +F A R + + + + + Sbjct: 146 IEDVLSLQQIGLKAGAAPASINRRLILLRYMFNLAWRDWKIAGVTGNPTHGVRLLKENNQ 205 Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227 E + + S+ + FLL +G R ++ A + + + Sbjct: 206 KERYVRAEELALLYRAVKESQNKMLQHIVAFLLLTGTRRNEVLHATWEDVDLIKGMWRIP 265 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT---QFSIWFKAKATKAGVN- 283 +T + +P + + + + + KAG+ Sbjct: 266 QTKSGFARHVPLNDGAYAVLQQMQGRSQSHYIFGNPKTGKPYVHVWYAWNSARVKAGLPD 325 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 H +R A++ + G + +E+ G + + Y L N Sbjct: 326 VRLHDLRHTFASLLINNGRSIYEVQKLLGHTQIKTTQRYAHLTQETLLDASNI 378 >gi|296273032|ref|YP_003655663.1| integrase family protein [Arcobacter nitrofigilis DSM 7299] gi|296097206|gb|ADG93156.1| integrase family protein [Arcobacter nitrofigilis DSM 7299] Length = 312 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 39/286 (13%), Positives = 94/286 (32%), Gaps = 33/286 (11%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRK--SGDFDYRKITTKHIRSGVESRK 127 + L+ ++ + +L + ++ Q + ++ + Sbjct: 3 IDKLLKDFFFHCQFEKNLNPKTLNAYTIDIKQFKAFNNIETLSINDVDKDVLKEYIRHLY 62 Query: 128 H---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER-PKRKTEGIRPWTKEDMQQFK 183 P S + L +++ F + +E + ++P + K + + ++++ Sbjct: 63 SIDLKPKSIKRKLATLKSFFNYLEFEEIILVSPFRKMRISIKEQKSLPKTIDIRNIRKLF 122 Query: 184 SFWSEGS---------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-Q 227 + + + E L +GLR S+ ++ + +I+ Sbjct: 123 KYVYKIKSNNKETESFSYKTIVRDIAILELLFATGLRVSEVSNMKYSNIDLSSGNIRILG 182 Query: 228 KTGTIITVELPDGFMKLLAMTP--------IGKETFFINNDKQKMNATQFSIWFKAKATK 279 K T+++ D +KL+ + FFIN K++ S K Sbjct: 183 KGNKERTIQICDQEVKLILKEYFSLFKDEIYKNKCFFINRLGNKLSEQSISNMIKKYQKN 242 Query: 280 AGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 A V + + H R AT+ + G + G ++ + YT Sbjct: 243 ANVGQHLTPHMFRHSFATMLLEEGVDIRYIQGMLGHSSISTTQIYT 288 >gi|119946910|ref|YP_944590.1| tyrosine recombinase XerD [Psychromonas ingrahamii 37] gi|119865514|gb|ABM04991.1| tyrosine recombinase XerD subunit [Psychromonas ingrahamii 37] Length = 298 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 39/283 (13%), Positives = 91/283 (32%), Gaps = 27/283 (9%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR-------KITTKHIRSGVESR 126 I ++ S L+ N+ S+ + + + Sbjct: 6 IDQFLDSLWLERGLSQNTLESYRHDLRLVEIFLATRLVSLCSASSLDLIDYFSCRLSGEK 65 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 ++ +S + ++++R +++ R++ +P +E PK + ++ ++ S Sbjct: 66 EYKNASTARLMSALRRYYQYLCREKIREDDPSAKLESPKIIKPLPKSLSESEVDGLLSSP 125 Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-----TQKTGTIITVEL 237 + + E L +GLR S+ ++ + ++ + + E Sbjct: 126 DLTDSVQFRDKAMLELLYATGLRVSELVGLSMEEINLKQGVVRVTGKGDKTRLVPLGEEA 185 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQK------MNATQFSIWFKAKATKAGVNK---SAHG 288 + + ++ M F K A G++K S H Sbjct: 186 IYWVERYIEEARPDLLKGQSSDVLFPSRRATVMVRQTFWHRIKFYAQLCGIDKEALSPHV 245 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330 +R AT + GA + G + + YT A DR++ Sbjct: 246 LRHAFATHLLNYGADLRVVQMLLGHSNLSTTQIYTHIAQDRLK 288 >gi|49478402|ref|YP_037892.1| site-specific tyrosine recombinase XerC [Bacillus thuringiensis serovar konkukian str. 97-27] gi|196042353|ref|ZP_03109624.1| tyrosine recombinase XerC [Bacillus cereus NVH0597-99] gi|218904959|ref|YP_002452793.1| tyrosine recombinase XerC [Bacillus cereus AH820] gi|225865812|ref|YP_002751190.1| tyrosine recombinase XerC [Bacillus cereus 03BB102] gi|228916468|ref|ZP_04080034.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228928879|ref|ZP_04091911.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935145|ref|ZP_04097972.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228947550|ref|ZP_04109840.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229123345|ref|ZP_04252549.1| Tyrosine recombinase xerC [Bacillus cereus 95/8201] gi|229157407|ref|ZP_04285485.1| Tyrosine recombinase xerC [Bacillus cereus ATCC 4342] gi|254721983|ref|ZP_05183772.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str. A1055] gi|301055321|ref|YP_003793532.1| tyrosine recombinase [Bacillus anthracis CI] gi|49329958|gb|AAT60604.1| site-specific integrase/recombinase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|196026809|gb|EDX65445.1| tyrosine recombinase XerC [Bacillus cereus NVH0597-99] gi|218540108|gb|ACK92506.1| tyrosine recombinase XerC [Bacillus cereus AH820] gi|225791021|gb|ACO31238.1| tyrosine recombinase XerC [Bacillus cereus 03BB102] gi|228626134|gb|EEK82883.1| Tyrosine recombinase xerC [Bacillus cereus ATCC 4342] gi|228660121|gb|EEL15757.1| Tyrosine recombinase xerC [Bacillus cereus 95/8201] gi|228812070|gb|EEM58401.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228824510|gb|EEM70315.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830686|gb|EEM76291.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228843047|gb|EEM88129.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|300377490|gb|ADK06394.1| tyrosine recombinase [Bacillus cereus biovar anthracis str. CI] Length = 299 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 43/287 (14%), Positives = 95/287 (33%), Gaps = 27/287 (9%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126 +K L+ + + + + S+++ + ++ G + IT +R + + Sbjct: 3 VKKLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFMEREGISSFLDITYADVRLYLTTL 62 Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----M 179 S + ++S+R L+++ +R+ Y NP PK++ + E+ Sbjct: 63 HDEKLARKSVARKVSSLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELF 122 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238 + + G + + E + +G+R S+ + + + +I K + Sbjct: 123 EVSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFG 182 Query: 239 DGFMKLLAMTPI------------GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284 L F+N + + KA + Sbjct: 183 SYAQDALITYIENGRKQLAEKTEEQSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRI 242 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 S H +R AT D GA + G + + + YT + RL Sbjct: 243 SPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTH-VSKERL 288 >gi|78357014|ref|YP_388463.1| tyrosine recombinase XerD subunit [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219419|gb|ABB38768.1| tyrosine recombinase XerD subunit [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 309 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 44/279 (15%), Positives = 87/279 (31%), Gaps = 22/279 (7%) Query: 74 LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTP 130 ++ + + L+ N+ S+ + + +T + + + + Sbjct: 17 IVDSFLQHLLISRGLSENTLSSYGTDLQSFLDFLHHKKSRLEDVTDQSLLLYIMHLRRRG 76 Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S + L ++R LF++ Q ++ NPC +E PK +++++ + + Sbjct: 77 LSSKSLARQLAALRGLFRYGTEQNLLSENPCRFLENPKIPKSLPEYLSQQEIAEVLAQPD 136 Query: 188 E----GSQPRLAFEFLLYSGLRCSDSCRAGV-QHLQNNIFSIKTQKTGTIITVELPDGFM 242 G + R E L +GLR S+ K TV + Sbjct: 137 LKEKLGFRDRTMLELLYAAGLRVSELITLKPLDFDPLTGLVRVFGKGAKERTVPVHATAA 196 Query: 243 KLLAMTPIGKETFFINNDKQKM--------NATQFSIWFKAKATKAGVNK--SAHGVRKF 292 + L F + + AG+++ S H R Sbjct: 197 RFLGAYLRDWRPAFKPVENILFLNRSGKGLTRQAVWKIVRRHVADAGIHRQISPHTFRHS 256 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 AT + GA + G + E YT + RL Sbjct: 257 FATHLLEGGADLRTVQLLLGHADIAATEIYTH-VETERL 294 >gi|157825624|ref|YP_001493344.1| site-specific tyrosine recombinase XerD [Rickettsia akari str. Hartford] gi|157799582|gb|ABV74836.1| site-specific tyrosine recombinase XerD [Rickettsia akari str. Hartford] Length = 306 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 47/287 (16%), Positives = 99/287 (34%), Gaps = 35/287 (12%) Query: 73 WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRK--ITTKHIRSGVESRKH- 128 IS++ + +L+ NS +S++ ITT ++R +E + Sbjct: 2 EFISQFLEMLLAERALSKNSILSYKRDLCDFQNYLAKQRLSALNITTANVRDWIEYLANN 61 Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 S + +++++ +++ + + + NP L+V+ PK + + + + ++ + Sbjct: 62 DLQARSINRKISTVKNYYEFLISENHTTFNPVLNVDLPKYQNKLPEILSIDQIKSLLEYC 121 Query: 187 -----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--------QNNIFSIKTQKTGTII 233 EG + L SGLR S+ + + + K Sbjct: 122 SQDNSPEGIRLNAMIHLLYASGLRVSELVSLKLSDILTNKTSKGEVRKIFSVLGKGNKER 181 Query: 234 TVELPDG----FMKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWFKAKATKA 280 + + + K LA+ I N M F+I K+ A A Sbjct: 182 VIVINEQAVISIAKYLAIRDIFVNKAKPKNLIYLFPSSALTGYMTRQNFAILLKSAALYA 241 Query: 281 GV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + + S H +R A+ + GA + G + + YT Sbjct: 242 NLNPEHVSPHILRHSFASHLLEGGADLRVIQDLLGHSDISTTQIYTH 288 >gi|169826673|ref|YP_001696831.1| integrase-recombinase protein [Lysinibacillus sphaericus C3-41] gi|168991161|gb|ACA38701.1| integrase-recombinase protein [Lysinibacillus sphaericus C3-41] Length = 275 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 40/274 (14%), Positives = 87/274 (31%), Gaps = 13/274 (4%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSS 132 ++EY + AV + ++ ++ +R+ + +T++++R + P++ Sbjct: 1 MNEYLLCLKLENKAVATITKYKWILERFLREC-KVPLKDMTSENVREWINDFSIDKKPNT 59 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-QQFKSFWSEGSQ 191 ++ F++ +EY+ RP+ + + + + Sbjct: 60 IALVHATLSTFFQFCFDEEYIERVIIKKRWRPQLPKSLPNYLDEYEFSRIKLISEQLSIR 119 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMTPI 250 R FLL SG R S+ ++ + + + K I T+ L Sbjct: 120 DRAIILFLLTSGCRVSEMSALNIKDINMDKHTAEVVGKGNKIRTIHFSLECAIALQNYLQ 179 Query: 251 GKETFFINNDKQKMNAT-----QFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303 + K +AG+ K H R AT GA Sbjct: 180 ARTCDPKEPLFMNKFGDRLLNGGIRGVLKKVGKQAGLEKIFHPHCCRHTFATNLLARGAD 239 Query: 304 AHELMATYGWKTVDQAETYTKG-ADRIRLGIKNS 336 + G ++ Y + ++ RL +N Sbjct: 240 LQFIADEMGHADLNTTRIYAQIPSEDKRLKYQNI 273 >gi|254520505|ref|ZP_05132561.1| phage integrase [Clostridium sp. 7_2_43FAA] gi|226914254|gb|EEH99455.1| phage integrase [Clostridium sp. 7_2_43FAA] Length = 390 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 51/378 (13%), Positives = 116/378 (30%), Gaps = 54/378 (14%) Query: 15 RTRHGKIIYYF---RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + R+G R G+ IR + ++ + + K + + TL Sbjct: 16 KYRNGLWRGSITTGRNTEGKLIRKQFYGKTK--REVLDKMNDYRDKSSRGLIAKDEKITL 73 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESR--- 126 + + + L ++ + ++ I+ G + +T I++ S Sbjct: 74 EEWYNIWLFQFKANELKASTIERYNVFYRNYIKGCNIGQVKLKDLTAPIIQNYYNSLIKN 133 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED--MQQFKS 184 TP + +++ +A R Y+ IN C +V PK + + Q+ Sbjct: 134 GKTPYTVKMLHKALKSSLSYAKRINYIGINCCDNVIPPKVINKDDDKFKVFTLEEQKKFM 193 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------------ 232 + + RL F L +G+R + + + ++K K+ + Sbjct: 194 NVIKDHKYRLMFILALGTGIRIGELVALKWDDINFDECTLKVNKSISRSYIEIEGKRKFL 253 Query: 233 ------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMN--------------A 266 V +P +K L ++ + N + + Sbjct: 254 LEETTPKTRSSIREVGIPSNILKELINHRKEQDEYKDNYKEIYTDNNYVFTDALGRYILP 313 Query: 267 TQFSIWFKAKATKAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK 324 S + + + H +R AT + G + G ++ A+ YT Sbjct: 314 DTLSKAYLKVLKDNNIPHTRFHSLRHTYATRLFEKGVPLKTVQKLLGHSSIKITADIYTH 373 Query: 325 GADRIRLGIKNSRRISSV 342 + I +++ + Sbjct: 374 VIGNEK--ISAVEKLNDL 389 >gi|317129457|ref|YP_004095739.1| integrase family protein [Bacillus cellulosilyticus DSM 2522] gi|315474405|gb|ADU31008.1| integrase family protein [Bacillus cellulosilyticus DSM 2522] Length = 391 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 50/387 (12%), Positives = 109/387 (28%), Gaps = 62/387 (16%) Query: 18 HGKIIYYFRKG-----HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 G + G+RI+ + L + E K Sbjct: 8 RGNNRWRLEVSLGVDQDGKRIKKRKTITAKNKTEAKKRLAEFVTEIEAGEYIDPSKMKFK 67 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH--- 128 + E+ L + +++S + +I G+ + +I + ++ Sbjct: 68 DFVKEWETKYGMKHLGAKTLETYKSIINNYLIPTFGNKKLDEFKPINIINYLDCLGEDNA 127 Query: 129 ---------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + SS +R +F A + NP SV+ PK E +TK+++ Sbjct: 128 RKDGKEGGLSSSSIKYHYRVLRNIFSRAKEWIIIKNNPVESVKPPKVTQEKTSVYTKDEV 187 Query: 180 QQFKSF-WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-------------------- 218 + +E +L L +GLR + + Sbjct: 188 IELLELLKNEPIHQKLMVTAALMAGLRRGEILGLQWDDIDLDAGTISINHSLQYTKEKGY 247 Query: 219 -------------NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN 265 +I ++ + + F + + + Sbjct: 248 VLGPPKNNSSIRKVSIPMYLVEEFKKYKRTKSKERIQAAELWEGGKYFYVFSSWNGKPFY 307 Query: 266 ATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE---- 320 T W++ + G H +R +AT+ + G A + A G + Sbjct: 308 PTAVGTWWRRFLKRKGFKYIRFHDLRHTAATLLINEGEHAKTISARLGHADIKTTMNIYG 367 Query: 321 TYTKGADRIRLGIKNSRRISSVVDSDD 347 Y + AD + +++S+ + + Sbjct: 368 HYLREADEK-----AANKLNSIFGNTN 389 >gi|329733650|gb|EGG69978.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus 21193] Length = 298 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 36/276 (13%), Positives = 88/276 (31%), Gaps = 23/276 (8%) Query: 76 SEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH------ 128 + + + + ++ S++ Q + ++ T R + Sbjct: 6 DAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLEQEHL-ELNTFEYRDARNYLSYLYSNHL 64 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +S + ++++R +++ + + INP + + PK++ + + +E+M+ E Sbjct: 65 KRTSVSRKISTLRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEVLFKTVEE 124 Query: 189 GS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMK 243 + + R+ E L +G+R S+ Q + K V + Sbjct: 125 DTSKNLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVLGKGSKERFVPFGAYCRQ 184 Query: 244 LLAMTPIGKETFFINNDKQ--------KMNATQFSIWFKAKATK-AGV-NKSAHGVRKFS 293 + + N + + AGV H +R Sbjct: 185 SIENYLEHFKPIQSCNHDFLIVNMKGEAITERGVRYVLNDIVKRTAGVSEIHPHKLRHTF 244 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + GA + + G + YT +++ Sbjct: 245 ATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQ 280 >gi|312130418|ref|YP_003997758.1| tyrosine recombinase xerd [Leadbetterella byssophila DSM 17132] gi|311906964|gb|ADQ17405.1| tyrosine recombinase XerD [Leadbetterella byssophila DSM 17132] Length = 296 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 47/282 (16%), Positives = 93/282 (32%), Gaps = 24/282 (8%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVE---S 125 I ++ LA NS S+ + G + H+ + +E Sbjct: 3 WPEAIRAFKNYLKLERGLAPNSVESYLRDLGALASFLDGKVAPNTVEEDHLYAFIETISE 62 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS- 184 + S+ + L+ ++ F++ ++ +P + PK + ++++ Sbjct: 63 MGLSSSTQARMLSGIKAFFEFLRLEKIRDTDPTALLVGPKLIRKLPEVLQVKEVEALLEG 122 Query: 185 ---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ-HLQNNIFSIKTQKTGTIITVELPDG 240 EG++ R E L SGLR S+ + + K V + Sbjct: 123 IDLSTPEGTRNRAMLEVLYSSGLRVSEVVNLQISRCFFEEGYLQVRGKGSKTRLVPIGKQ 182 Query: 241 FMKL-----------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AH 287 + L + ++ F+N ++ K A AG+ K+ H Sbjct: 183 AIHYTEIYKTLVRPSLDIKKGYEDHLFLNRRGAALSRVMVFYVVKNAAEAAGIQKTISPH 242 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R AT + GA + G +++ E YT DR Sbjct: 243 TLRHSFATHLVEGGADLRAVQEMLGHESILTTEIYTH-LDRA 283 >gi|256832498|ref|YP_003161225.1| tyrosine recombinase XerD [Jonesia denitrificans DSM 20603] gi|256686029|gb|ACV08922.1| tyrosine recombinase XerD [Jonesia denitrificans DSM 20603] Length = 310 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 50/292 (17%), Positives = 99/292 (33%), Gaps = 33/292 (11%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHI-------RS 121 + ++ Y + ++ N+ ++ + + + +T I R Sbjct: 7 RDIVQGYLQHLLVERGVSPNTLAAYRRDLARYLDYLSHRELSLHSVTQSTIDDFLVALRE 66 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 G + + SS + L S+R L ++A + VA +P +SV PK + D+++ Sbjct: 67 GSLGQSLSQSSVSRHLASLRGLHRYAEAEGVVAGDPAVSVRPPKLPQRLPDVLSTHDVER 126 Query: 182 FKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ---KTGTIIT 234 + G + R EFL +G R S+ + + + + K Sbjct: 127 LLTTPPLDSAVGLRDRALLEFLYATGARISEVVGLDRDDVIADDGFVVARVLGKGHKERL 186 Query: 235 VELPDGFMKLLAMTPIGKETF-----------FINNDKQKMNATQFSIWFKAKATKAGVN 283 V + L + F+N ++++ ++ A A + Sbjct: 187 VPVGSCAYDALNAYLVRARPELAGAGVGTPALFLNTRGRRLSRQSAFGVVRSAARLAAIP 246 Query: 284 K----SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330 S H +R AT GA + G +V + YT AD +R Sbjct: 247 GAESVSPHTLRHCFATHMLSGGADIRVVQELLGHASVTTTQIYTHVSADALR 298 >gi|225619262|ref|YP_002720488.1| tyrosine recombinase XerD [Brachyspira hyodysenteriae WA1] gi|225214081|gb|ACN82815.1| tyrosine recombinase XerD [Brachyspira hyodysenteriae WA1] Length = 309 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 37/279 (13%), Positives = 99/279 (35%), Gaps = 23/279 (8%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGV---ESRKH 128 L+ E+ + A ++ S+ + + + + +R + + + Sbjct: 17 LLEEFSDYLQTLNFAAHTINSYNKDLKEYFQFLHNKNIPLDEANHYTVRDYLTFLKEKSL 76 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 T S+ + L+S++ +K+ +R Y N + ++ PKR+ + + +D+ + Sbjct: 77 TNSTMSRHLSSIKKFYKYLIRNGYSDKNRIVDMKSPKREEHIAKFLSIDDIDNILAIDDG 136 Query: 189 GS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII----------- 233 G + ++ F+ GLR S+ + ++ +++ G+ + Sbjct: 137 GDFTLIRDKMMALFMYAIGLRVSELASLKLSMIKKGSETLRICGKGSKVRDIPILPIIYE 196 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDK-QKMNATQFSIWFKAKATKAGV--NKSAHGVR 290 ++ +++ + N + ++ K A + + S H +R Sbjct: 197 NWDVYMEKRRIIQREYSENNDYIFINRFGKPISDRSIRTSMKRLIRNANISIDFSPHTLR 256 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + A + G +T+ + YT + Sbjct: 257 HTFATHLLNNDAEIRGVQELLGHETIATTQRYTHVTNSR 295 >gi|314933431|ref|ZP_07840796.1| tyrosine recombinase XerC [Staphylococcus caprae C87] gi|313653581|gb|EFS17338.1| tyrosine recombinase XerC [Staphylococcus caprae C87] Length = 296 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 35/265 (13%), Positives = 92/265 (34%), Gaps = 20/265 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTS 139 + + + S+ Q D K R+ + ++ + +++ Sbjct: 16 RNFSEYTLKSYHDDLIQFNDFLVSEHLDLATFEYKDARNYLAFLYSHNLKRTTVSRKIST 75 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPRLA 195 +R +++ + Q+ + +NP + + PK++ + + +E+M Q + +G + R+ Sbjct: 76 LRTFYEYWMTQDELIVNPFVQLVHPKKEQYLPQFFYEEEMEALFQTVEQDNKKGMRDRVI 135 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254 E L +G+R S+ ++ + N K + + + + + Sbjct: 136 IELLYATGIRVSELINIKIKDIDMNLPGVKVLGKGNKERFIPFGEFCKQSIERYLDEFQP 195 Query: 255 FFINNDKQ--------KMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGATA 304 ++ + + + AGV + H +R AT + GA Sbjct: 196 RKSSDHEYLIVNMSGAPITERGVRYVLNDVVKRTAGVTDIHPHKLRHTFATHLLNQGADL 255 Query: 305 HELMATYGWKTVDQAETYTKGADRI 329 + + G + YT +++ Sbjct: 256 RTVQSLLGHVNLSTTGRYTHVSNQQ 280 >gi|300858733|ref|YP_003783716.1| tyrosine recombinase [Corynebacterium pseudotuberculosis FRC41] gi|300686187|gb|ADK29109.1| tyrosine recombinase [Corynebacterium pseudotuberculosis FRC41] gi|302206440|gb|ADL10782.1| Tyrosine recombinase XerC [Corynebacterium pseudotuberculosis C231] gi|302330996|gb|ADL21190.1| Tyrosine recombinase XerC [Corynebacterium pseudotuberculosis 1002] gi|308276682|gb|ADO26581.1| Tyrosine recombinase XerC [Corynebacterium pseudotuberculosis I19] Length = 293 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 39/288 (13%), Positives = 90/288 (31%), Gaps = 25/288 (8%) Query: 72 KWLISEYRKSAH-WGSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVESRK 127 LI ++ + + + + S + + DF + + E + Sbjct: 5 SALIDDFIEHLELVSGRSPATLKGYRSDLNTFAMRKPELKDFTLDNLRDWLGEAVAEGK- 63 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 T ++ + + + R + W ++Q Y+ + + PK + + + Sbjct: 64 -TRATLARRVAAARSMSSWLLKQGYIETDMAARLVAPKVGRHLPKVLAAGQAESVVEHPA 122 Query: 188 EGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGF 241 + + R E L +G+R S+ C ++ + + K V Sbjct: 123 SKTEAEFARDRAVLELLYATGIRVSELCGINLEDIDWRRKTLKVLGKGDKQRVVPFGQAA 182 Query: 242 MKLLAMTPIGKETFFINNDKQ----------KMNATQFSIWFKAKATKAGV-NKSAHGVR 290 L + + +++ Q A +AG+ H VR Sbjct: 183 CDALTHWIETGRPAMCKDQSEAALFLGVRGGRLDPRQVRRLVDAAGKEAGISGLGPHSVR 242 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338 +AT D GA + G +++ + YT + + + +R Sbjct: 243 HTAATHMLDGGADLRIVQELLGHSSLNTTQIYTHVSSQR--LKEAFKR 288 >gi|194288692|ref|YP_002004599.1| site-specific tyrosine recombinase xerd [Cupriavidus taiwanensis LMG 19424] gi|193222527|emb|CAQ68530.1| site-specific tyrosine recombinase [Cupriavidus taiwanensis LMG 19424] Length = 312 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 51/269 (18%), Positives = 86/269 (31%), Gaps = 24/269 (8%) Query: 86 SLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140 L+ N+ ++ + R G+ + SSA + L Sbjct: 34 GLSRNTIDAYRRDLTLLARWLQHEQRGELLDADDGALSAYFSARHTQTRASSANRRLAVF 93 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAF 196 R ++WA+R+ V ++PCL + K+ + ++ ++ G + R Sbjct: 94 RRFYQWALREHLVQVDPCLLLRPAKQPPRHPKTLSEAQVEALLEAPDTETPLGLRDRTML 153 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPDGFMKLLAMT------ 248 E + SGLR S+ + + N + K V L Sbjct: 154 ELMYASGLRVSELTQMKTVEIGLNEGVARVVGGKGDKERLVPFGQQAGDWLRRYLASARP 213 Query: 249 ----PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302 + F+ + M F K A AGV S H +R AT + GA Sbjct: 214 VLLAGRACDALFVTQRGEGMTRQAFWHLIKRHARDAGVHAPLSPHTLRHAFATHLLNHGA 273 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRL 331 + G + + YT A R RL Sbjct: 274 DLRVVQLLLGHADISTTQIYTHVA-RERL 301 >gi|224537518|ref|ZP_03678057.1| hypothetical protein BACCELL_02397 [Bacteroides cellulosilyticus DSM 14838] gi|224520831|gb|EEF89936.1| hypothetical protein BACCELL_02397 [Bacteroides cellulosilyticus DSM 14838] Length = 316 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 53/293 (18%), Positives = 100/293 (34%), Gaps = 25/293 (8%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI-----TTKHIRSGVESRKHTP 130 +Y K L+ N+ ++ + D+++R + + + +G+ P Sbjct: 21 QQYLKLEKA--LSANTLDAYLTDLDKLLRFLKAENIDMLSVTLDDLQRFAAGLHDIGIHP 78 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFW 186 S + ++ ++ F + + +Y +P +E PK + T E++ Sbjct: 79 RSQARIMSGIKSFFHFLIMADYREDDPSELLEGPKIGFKLPEVLTVEEIDTIIATVDMSK 138 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFMKLL 245 EG + R E L GLR S+ C + L + F K V + +K + Sbjct: 139 KEGQRNRAILETLYSCGLRVSELCNLKLSELYFDEGFIKVEGKGSKQRLVPISPRAIKEI 198 Query: 246 AMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293 ++ F+ ++ K A KAG+ K S H R Sbjct: 199 KYWLLDRNLGKIKKGFEDYVFLARWGNSISRIMVFHLIKELAEKAGITKNISPHTFRHSF 258 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346 AT + GA + G +++ E YT DR L + + Sbjct: 259 ATHLLEGGANLRAIQCMLGHESIATTEIYTH-IDRNMLRSEIIEHHPRNIKYR 310 >gi|308234475|ref|ZP_07665212.1| integrase family protein [Atopobium vaginae DSM 15829] gi|328944068|ref|ZP_08241533.1| tyrosine recombinase XerD [Atopobium vaginae DSM 15829] gi|327492037|gb|EGF23811.1| tyrosine recombinase XerD [Atopobium vaginae DSM 15829] Length = 337 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 45/297 (15%), Positives = 105/297 (35%), Gaps = 35/297 (11%) Query: 71 LKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESR- 126 ++ L+ + + +L+ N+ ++E+ +R +D I+ K +RS + Sbjct: 37 VQQLMESFIQHLMTTQNLSPNTTRAYETDLKAYVRWLIKNSYDLLDISHKQLRSYLAQLY 96 Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 ++ + + L+++R +KW VR+ + ++ PK ++ +++ + Sbjct: 97 AARYASRTINRHLSAIRAWYKWLVRKGLTKKDSAAALASPKIPKTLPHVLSESSIEKLLA 156 Query: 185 FWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239 E + + R E L +G R S++ V + + ++ K V + Sbjct: 157 TCQEDTVCGLRDRALLELLYATGCRISEAAHLCVSDISFDSKQVRLFGKGSKERIVPIYP 216 Query: 240 GFMKLLAMT-----------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 ++L M + FI+ + M+ F+ + + Sbjct: 217 ECARILHMYLTTARPVLLSKQKNQAQAQTNQHVFISTRGKAMSDQALRYVFEHYMRLSHL 276 Query: 283 N--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-----DRIRLG 332 + H +R AT GA + G ++ + YT + D R Sbjct: 277 QEIATPHTMRHSFATELLSHGADLRSVQELLGHASLATTQIYTHVSVNALKDAARRA 333 >gi|224370397|ref|YP_002604561.1| tyrosine recombinase XerD [Desulfobacterium autotrophicum HRM2] gi|223693114|gb|ACN16397.1| tyrosine recombinase XerD [Desulfobacterium autotrophicum HRM2] Length = 295 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 44/281 (15%), Positives = 84/281 (29%), Gaps = 24/281 (8%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH------IRSGVE 124 LI Y LA NS S+ + +E Sbjct: 2 DRLIDRYMAHLTLERGLAQNSLTSYAMDLATFADFLETNQISALDQVDTVVILAWLVHLE 61 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ---- 180 ++ +P S + L ++R +++ + NP ++ PK T R +++ + Sbjct: 62 AKGLSPRSRARHLIAVRGFYRFLALENLTRSNPLRLIDIPKAGTRLPRFLSQDQVTALLE 121 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 G + E L +GLR S+ + + ++ G+ + Sbjct: 122 MPDRTTHRGLRNAAMLEILYGAGLRVSELVGLKTEQVDLVACFVRLFGKGSRERIVPFGS 181 Query: 241 FMKLLAMTPIGKETFFINNDK-----------QKMNATQFSIWFKAKATKAGV--NKSAH 287 + M + ++ M F K A AG+ S H Sbjct: 182 HARQRTMEWLEWGRPWMLKKNASRYLFVARAGNPMTRQGFWKLLKKYALGAGISIKVSPH 241 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 +R AT + GA + G + + YT + + Sbjct: 242 TLRHSFATHLLEGGADLRSVQTMLGHADIASTQIYTHVSRQ 282 >gi|269123142|ref|YP_003305719.1| integrase family protein [Streptobacillus moniliformis DSM 12112] gi|268314468|gb|ACZ00842.1| integrase family protein [Streptobacillus moniliformis DSM 12112] Length = 287 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 41/266 (15%), Positives = 95/266 (35%), Gaps = 16/266 (6%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPS 131 ++ + + A + S+ + +K + IT+ I +E K +T + Sbjct: 4 VNSFLDYLKFEKGNADKTIESYRNDLYTFFKKV-NKKVVDITSDDIYQYIEKLKEKYTYN 62 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT---KEDMQQFKSFWSE 188 + I+ ++S++ FK+ ++ + +P + K++ + + Q + Sbjct: 63 TVIRKISSIKSFFKFCYIEKIIKNDPANKIHNLKKEKRLPNALSVEEINSIIQSFNHEPV 122 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT------QKTGTIITVELPDGFM 242 + +L +FL+ +G R S+ ++ ++N+ F + I +EL Sbjct: 123 NRRNQLIVKFLVATGARISEVINLEIKDIENSDFEFAKLYGKGSKYRFVPIYLELEKEIK 182 Query: 243 KLLAMTPIGKETFFINNDKQKMNAT-QFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 + + + + F A G+ K H R +AT+ + Sbjct: 183 EYIREIRPKIKGSEKSYLLFPGIRRENFWKILNKHAQNVGIEKKIHPHLFRHSTATMMIE 242 Query: 300 AGATAHELMATYGWKTVDQAETYTKG 325 GA + G ++ E YT Sbjct: 243 NGADIRIVQELLGHASITTTEVYTHV 268 >gi|77918422|ref|YP_356237.1| site-specific recombinase/integrase [Pelobacter carbinolicus DSM 2380] gi|77544505|gb|ABA88067.1| site-specific recombinase/integrase [Pelobacter carbinolicus DSM 2380] Length = 482 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 54/357 (15%), Positives = 124/357 (34%), Gaps = 26/357 (7%) Query: 9 PFVTKERTRHGKIIY--YFRKGHGRRIRLPYPH---ESTFIPAYMSALTGSTPKREYINS 63 P + G + +R +++ P+ E + + + E + S Sbjct: 124 PGLHICVNMRGNKRWLFRYRLYGRKKVVAIGPYPSIEPPLAKQMANEMQRNLALGERVVS 183 Query: 64 PRKKPT---TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 PR + T +Y + A + + + +QII K G+ +T K I+ Sbjct: 184 PRAQQKQQKTFGEFARKYLEHAKQT--KKSWKDDYNKLTNQIIPKWGEVPLTCLTPKEIQ 241 Query: 121 SGVE--SRKHTPSSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTK 176 + + + ++A + + VL+ AV+ + NP V + + R + Sbjct: 242 GYLNQVKARTSGTNANRHYAVLNVLYNLAVKWGEIDPWKNPMPGVSKFRDNPGRTRYLSM 301 Query: 177 EDMQQFKSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234 E+ ++F + E G A LL++G R + ++ + + ++ +T + Sbjct: 302 EECKRFLAALEEAPGQLAACALRLLLFTGCRAGEVLKSKWEDVSMEGRTMLLPETKNGKS 361 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNAT-----QFSIWFKAKATKAGVNKS---A 286 + + L + + N ++ F+ AG+ + Sbjct: 362 RVVHLNSLSLAEIEKLKDFRNPSNPYLFPGSSEDKPLGTVRKTFEHALKLAGLQGTDVVI 421 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343 H +R A++ A+ G + + + G +V E Y + S ++ + Sbjct: 422 HTLRHTHASLLANLGESLETIKVSLGHSSVKMTERYAHISGSKT--KDASDHLAEQL 476 >gi|193215186|ref|YP_001996385.1| tyrosine recombinase XerD [Chloroherpeton thalassium ATCC 35110] gi|193088663|gb|ACF13938.1| tyrosine recombinase XerD [Chloroherpeton thalassium ATCC 35110] Length = 305 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 45/285 (15%), Positives = 95/285 (33%), Gaps = 28/285 (9%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRKH 128 + E+ +L+ N++ S+ + + D ++ + +R + Sbjct: 9 ARYLREFLNYLRLERNLSENTKASYAHDLTRYLLYVQDSHENLDEVRAEDVRKFITELHD 68 Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK--------E 177 SS + ++++R L K+ ++ + N V PK + Sbjct: 69 LGLEASSISRNISAIRSLHKFLSAEKKIRKNVAEEVILPKLGKYLPTVLNQQEVDKLLEM 128 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----- 232 + + + EFL +G+R S+ Q+L + + G Sbjct: 129 PLHPENPKPKLAIRDKAILEFLYATGVRVSELVELKQQNLFFDSGFARIFGKGAKERLVP 188 Query: 233 ------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS- 285 VE +++ + + F+N +K+ + A +AG+ KS Sbjct: 189 VGSSAIHAVETYQKTIRIKLVNRASADFLFLNARGKKLTRMSIYNIVQEYAQQAGIEKSI 248 Query: 286 -AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 H +R AT + GA + G ++ + YT DR Sbjct: 249 SPHTLRHSFATHLLEGGADLRSVQEMLGHSSIKATQIYTH-VDRA 292 >gi|124267211|ref|YP_001021215.1| tyrosine recombinase XerD subunit [Methylibium petroleiphilum PM1] gi|124259986|gb|ABM94980.1| tyrosine recombinase XerD subunit [Methylibium petroleiphilum PM1] Length = 309 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 49/281 (17%), Positives = 90/281 (32%), Gaps = 24/281 (8%) Query: 74 LISEYRKSAHWG-SLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRK-- 127 I + ++ L+ N+ ++ R +R+ R Sbjct: 19 AIDAFLEALWVEDGLSDNTLAAYRRDLTLYARWLVHASGKPLDGSGEADLRAYALERHAG 78 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +SA + LT R F+WA+R+ ++ +P L + K+ + ++ ++ Sbjct: 79 TRATSANRRLTVFRRYFRWALREHRLSADPTLKLLAAKQPLRVPKTLSEAQVEALLEAPD 138 Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 + + R E L SGLR S+ ++ + +++ V + Sbjct: 139 VDTPLGLRDRAMLEILYASGLRVSELVTLKSVNVGYSEAALRVTGKGSKERLVPFGEEAH 198 Query: 243 KLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290 L + F+ M F K A AG+ S H +R Sbjct: 199 GWLMRYLAEARAAILGGQASDALFVTARGGPMTRQAFWQLIKRHAGAAGIQVPLSPHTLR 258 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 AT + GA + G + YT A R RL Sbjct: 259 HAFATHLLNHGADLRAVQMLLGHADISTTTIYTHVA-RERL 298 >gi|86142675|ref|ZP_01061114.1| putative tyrosine recombinase [Leeuwenhoekiella blandensis MED217] gi|85830707|gb|EAQ49165.1| putative tyrosine recombinase [Leeuwenhoekiella blandensis MED217] Length = 298 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 49/273 (17%), Positives = 95/273 (34%), Gaps = 25/273 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYR----KITTKHIRS--GVESRKHTPSSAIQFLT 138 L+ N+ +++ ++I+ + IT + ++ +++ T SS + ++ Sbjct: 18 RGLSENTVVNYGLDISKLIKWIDEHSVEASPISITKEQLQDFIYTYAKELTASSQARLIS 77 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194 ++ F++ V ++Y NP +E PK + +++++ + +G + R Sbjct: 78 GLKGYFEYLVFEDYRKDNPTDLIEAPKVGRKLPDTLSEDEVNRIIDAVDLSRPQGERNRA 137 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKLLAMTPIGKE 253 E L GLR S+ + L + I T K V + K + + Sbjct: 138 ILETLYGCGLRVSEVLNLKLSDLFFDEGYILVTGKGDKQRFVPIAPITQKYIEIYRDQIR 197 Query: 254 TFFINNDKQKM-----------NATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 + K K KAG+ K S H R AT Sbjct: 198 IHEAPKPEFKNILFLNRRGAQLTRAMIFTLVKQHTQKAGIKKKISPHTFRHSFATHLLQN 257 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 GA + G +++ E Y DR L Sbjct: 258 GADLRAIQQMLGHESITTTEVYMH-VDRSHLAD 289 >gi|331269460|ref|YP_004395952.1| tyrosine recombinase XerD [Clostridium botulinum BKT015925] gi|329126010|gb|AEB75955.1| tyrosine recombinase XerD [Clostridium botulinum BKT015925] Length = 292 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 47/280 (16%), Positives = 101/280 (36%), Gaps = 20/280 (7%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHT 129 + +S+Y + L+ N+ +++ + D I + V++ K Sbjct: 2 EKFLSKYIEDMLKKELSKNTIEAYKRDLIKFGEFLNKRHEDILDSDMVSIMAYVQTLKKE 61 Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK--- 183 SS I+ L ++R +K+ ++ NP ++ E PK K T +++ +F Sbjct: 62 RKADSSIIRSLVAIRNFYKFLIKTGQNIDNPLINYEVPKNKRTLPETLTVDEVDKFLSAP 121 Query: 184 -SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KTGTIITVELPDGF 241 +G + + E + +G++ S+ R + + + IK + + + Sbjct: 122 DCNEYKGIRDKAMLELMYATGMKVSELLRITIFDVNLKLSYIKCKGAKDKERIIPIGSYA 181 Query: 242 MKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRK 291 + L ++ F N KM F K A A +NK + +R Sbjct: 182 VNCLNEYLKVRDRMNADNLELLFCNLRGGKMTRQGFWKIVKKYAKDANINKKIDSYTLRH 241 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 A GA + G T+ + Y+ + + ++ Sbjct: 242 SFAVHLLQNGADMKSVQELLGHNTIATTQIYSSISKKNKI 281 >gi|282889659|ref|ZP_06298199.1| hypothetical protein pah_c003o054 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500486|gb|EFB42765.1| hypothetical protein pah_c003o054 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 304 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 53/288 (18%), Positives = 109/288 (37%), Gaps = 29/288 (10%) Query: 67 KPTTLKWLISEYRKSAHW-------GSLAVNSRISFESYFDQIIRKSGD---FDYRKITT 116 + +TLK L +R+ + L+ N+ ++ + Y+ + Sbjct: 4 EESTLKALF--FREIKDFLVFIRSEKGLSSNTIEAYMRDVQNFANYAWQQEVRRYQAVEP 61 Query: 117 KHIRSGVESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 +H+ + + S K + S+ + L S++V F + R+ + NP + +E PK Sbjct: 62 EHLIAFLGSLKSADYATSTISRTLVSLKVFFGFLKREGTIEQNPSMLLESPKLWQLLPDI 121 Query: 174 WTKED----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229 E+ M Q + ++G + R FE L SGLR S+ C + + + + + + Sbjct: 122 LDIEEVDLLMNQPDNKTAKGVRDRAIFELLYGSGLRVSEVCTLTIYSIDDQYIRVYGKGS 181 Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKAG 281 I M + + + + ++ + M+ K A +AG Sbjct: 182 KERIVPIGSQALMAVDQYLSLYRWQWDSEKEQSLFVTLRGKSMDRISIWRSIKEYAQQAG 241 Query: 282 VNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 + K+ H +R AT + GA + G + + YT+ + Sbjct: 242 ITKTISPHTLRHSFATHLLNNGADLRVIQDLLGHANISSTDRYTRVSS 289 >gi|220904455|ref|YP_002479767.1| tyrosine recombinase XerD [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868754|gb|ACL49089.1| tyrosine recombinase XerD [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 310 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 49/280 (17%), Positives = 89/280 (31%), Gaps = 26/280 (9%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD--------YRKITTKHIRSGVESR 126 +Y L+ + S+ + + + + + +R Sbjct: 21 WQDYL--LAQRGLSPQTVASYGQDLENFFLFRQELAQGEAVSPQPDEQEIFLYLAWLRAR 78 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 ++T + + L+++R F +AV++ + NP ++ PK ++++M+ + Sbjct: 79 QNTGRTLARRLSALRAFFDFAVQENAIKNNPAQLLDNPKLPQHLPEVLSRDEMESLLARP 138 Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCR-AGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 G + R E L +GLR S+ C K V L D Sbjct: 139 DLRDRGGQRDRCILELLYAAGLRVSELCDLCLPDLDLQRGLVRVFGKGAKERLVPLHDLM 198 Query: 242 MKLLAMTPIGKETFFINNDKQKM--------NATQFSIWFKAKATKAGV--NKSAHGVRK 291 +L F Q K A +AG+ S H R Sbjct: 199 QNMLENYIRDWRPAFSPTGNQLFVNRSGRALTRQYIWKMVKKYALEAGIRRPVSPHTFRH 258 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIR 330 AT + GA + G + E YT A+R+R Sbjct: 259 SFATHLLEGGADLRAVQLLLGHADISATEIYTHVQAERLR 298 >gi|94986683|ref|YP_594616.1| site-specific recombinase [Lawsonia intracellularis PHE/MN1-00] gi|94730932|emb|CAJ54295.1| site-specific recombinase [Lawsonia intracellularis PHE/MN1-00] Length = 306 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 57/281 (20%), Positives = 101/281 (35%), Gaps = 22/281 (7%) Query: 72 KWLISEYR-KSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIR---SGVES 125 L ++ K L+ N+ +++ D D ++ I ++I + Sbjct: 7 SQLAWKWLDKLISERGLSHNTIQAYKQDIDVFYLFFQDAGCNFNSIDDEYIMLFIIWLRK 66 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 R + + + L+S+R F W V ++ + NP L ++ PK + ++++M + + Sbjct: 67 RGDSSRTLARRLSSIRNFFHWCVEEDILLSNPALLIDGPKLPSLLPNILSQDEMLRLLTT 126 Query: 186 WSE----GSQPRLAFEFLLYSGLRCSDSCRAGV-QHLQNNIFSIKTQKTGTIITVELPDG 240 G + ++ E L SG+R S+ V Q+ K G + L Sbjct: 127 PDITNKLGFRDKVILELLYASGIRVSELIGVHVLDFDQDKGIIKVFGKGGKERYIPLHSS 186 Query: 241 FMKLLAMTPIGKETFFINNDKQKM--------NATQFSIWFKAKATKAGVNKS--AHGVR 290 MKLL F +K K A A +NKS H R Sbjct: 187 AMKLLIHYVQKIRPMFTPIEKFLFLNRSGKGLTRQAIWKIIKRYALLASINKSISPHTFR 246 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIR 330 AT + GA + G + E YT +DR++ Sbjct: 247 HTFATHLLEGGADLRSVQLLLGHVDMSATELYTHVQSDRLK 287 >gi|303247551|ref|ZP_07333822.1| integrase family protein [Desulfovibrio fructosovorans JJ] gi|302491031|gb|EFL50925.1| integrase family protein [Desulfovibrio fructosovorans JJ] Length = 413 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 47/325 (14%), Positives = 102/325 (31%), Gaps = 18/325 (5%) Query: 31 RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVN 90 ++ + T + + T ++ + N Sbjct: 64 KKAHVTGEGPKTLQAKRDIEKAREEAEAREKAVQEAEAVTFGFIFEGVYLEHARQNKKPN 123 Query: 91 SRISFESYFDQII-RKSGDFDYRKITTKH---IRSGVESRKHTPSSAIQFLTSMRVLFKW 146 + + + F + + GD + I+ H IR + + + SA L +R +F + Sbjct: 124 TVQTEQGLFRKWLGPVIGDVPLKDISPFHLERIRKNIAAAGLSARSAHYALCVVRQVFNF 183 Query: 147 AVRQEYV-AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-RLAFEFLLYSGL 204 A + ++P V+ PK +R T E+ + ++ S L+ GL Sbjct: 184 ARDHDMTDCVSPTCKVKAPKTDNRRLRFLTHEEADKLLEHVAKRSHELHAISLVSLHCGL 243 Query: 205 RCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262 R + + + ++ + K G + +LA G + + Sbjct: 244 RAGEIFNLTWSDVDFDRETLTLRDTKNGRTRIAYMTGQVRGMLAARVKGGPGDPVFPGRG 303 Query: 263 KMNATQFSIWFKAKATKAGV---------NKSAHGVRKFSATISADAGATAHELMATYGW 313 + + S F+ G H +R A+ + G + + G Sbjct: 304 GVRRSYVSNAFERAVKDLGFNEGITDSRQKVVFHSLRHTFASWLVEQGTDLYSVKELMGH 363 Query: 314 KTVDQAETYTKGA-DRIRLGIKNSR 337 +T+ E Y+ + D +R +K Sbjct: 364 RTLSMTERYSHLSPDSLRRAVKGLE 388 >gi|330427289|gb|AEC18623.1| site-specific tyrosine recombinase XerD [Pusillimonas sp. T7-7] Length = 282 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 47/279 (16%), Positives = 94/279 (33%), Gaps = 24/279 (8%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFD---YRKITTKHIRSGVESRKHT--PSSAIQFLTSM 140 LA N+ ++ + I+ ++ + ++A + L ++ Sbjct: 4 GLAQNTLSAYRRDLSAFALWLHAKPGKTLEQADAADIQDWFAAKHASTKATTANRRLAAL 63 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAF 196 + + WA+RQ VA +PCL++ K+ + +++ + G + R Sbjct: 64 KRYYLWAMRQGLVAKDPCLTLRAAKQAARFPKTMSEDQVDALLQAPDDNSPLGLRDRAML 123 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLLAMT------ 248 E L +GLR S+ + + ++ + V L D + + + Sbjct: 124 ETLYATGLRVSELINLELLDVSLTEGVVRVTQGKGGKDRLVPLGDEALHWIDLYAKQSRP 183 Query: 249 ----PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302 F+ M F + K A A + S H +R AT + GA Sbjct: 184 GLLGQRRCNALFVTARAAAMTRQSFWLIVKKYAALADIHTPLSPHVLRHAFATHLLNHGA 243 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 + G + + YT A R RL +++ Sbjct: 244 DLRVVQMLLGHADISTTQIYTHVA-RERLKTMHAKHHPR 281 >gi|293393894|ref|ZP_06638201.1| tyrosine recombinase XerC [Serratia odorifera DSM 4582] gi|291423721|gb|EFE96943.1| tyrosine recombinase XerC [Serratia odorifera DSM 4582] Length = 304 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 42/278 (15%), Positives = 89/278 (32%), Gaps = 21/278 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD------FDYRKITTKHIRSGVESRK 127 + + + L+ ++IS+ +I + + +T + + + + Sbjct: 13 VDAFLRYLKVERQLSPLTQISYSRQLQALIALAAELGVSEWRQLDAVTVRQLAARSKRAG 72 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 SS L+++R W V Q + NP + P+ + ++M Q Sbjct: 73 LQSSSLALRLSALRSFLDWLVSQGQIVANPAKGIRTPRSGRHLPKNIDVDEMGQLLEIDL 132 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMK 243 + R E + +GLR S+ +H+ K + + + Sbjct: 133 NDPLAVRDRAMLEVMYGAGLRLSELVGLDCRHVDMAAGEVWVMGKGSKERKLPIGRTAVT 192 Query: 244 LLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 L G + F++N ++++ F K GV + H +R A Sbjct: 193 WLGHWLALRELFAPGDDAMFLSNQGKRISPRNVQKRFAEWGVKQGVSSHIHPHKLRHSFA 252 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 T ++ + G + + YT D L Sbjct: 253 THMLESSGDLRAVQELLGHANLTTTQIYTH-LDFQHLA 289 >gi|229098300|ref|ZP_04229247.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-29] gi|228685198|gb|EEL39129.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-29] Length = 302 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 42/287 (14%), Positives = 95/287 (33%), Gaps = 27/287 (9%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126 +K L+ + + + + S+++ + ++ G + +T +R + + Sbjct: 6 VKKLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYADVRLYLTTL 65 Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----M 179 S + ++S+R L+++ +R+ Y NP PK++ + E+ Sbjct: 66 HDEKLARKSVARKVSSLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELF 125 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238 + + G + + E + +G+R S+ + + + +I K + Sbjct: 126 EVSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFG 185 Query: 239 DGFMKLLAMTPI------------GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284 L F+N + + KA + Sbjct: 186 SYAQDALITYMENGRKQLANKTEEQSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRI 245 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 S H +R AT D GA + G + + + YT + RL Sbjct: 246 SPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTH-VSKERL 291 >gi|329571616|gb|EGG53297.1| tyrosine recombinase XerC [Enterococcus faecalis TX1467] Length = 298 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 34/279 (12%), Positives = 83/279 (29%), Gaps = 26/279 (9%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVES 125 L + Y + ++ +++ + + S + Sbjct: 6 WPELFARYL--IVERGYSEKTKKAYQEDIQHFFSFLKTSGNDYLTVEHLDVRAYLSELYD 63 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 ++++ +S + + S+R +++ ++ E + NP V K++ R + +++M Sbjct: 64 QEYSRNSISRKIASLRSFYQFLLKNEAIQENPFSYVHMKKKQLRLPRFFYEKEMDALFES 123 Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDG 240 + + E L +G+R S+ V + + K V Sbjct: 124 AQGEQPLDLRNQALLEVLYGTGIRVSECANLTVDAVDFQASVLLVHGKGNKDRYVPFGSF 183 Query: 241 FMKLLAMT------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 L F+N+ +++ T K+ + Sbjct: 184 AQDALKDYLENSRALLMTKYQKKHPYVFVNHHGEQITPTGIEYVLNQLIKKSSLNAEIHP 243 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 H +R AT + GA + G + + Y Sbjct: 244 HMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHV 282 >gi|82750853|ref|YP_416594.1| integrase/recombinase [Staphylococcus aureus RF122] gi|123754641|sp|Q2YXL6|XERC_STAAB RecName: Full=Tyrosine recombinase xerC gi|82656384|emb|CAI80803.1| integrase/recombinase [Staphylococcus aureus RF122] Length = 298 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 36/276 (13%), Positives = 88/276 (31%), Gaps = 23/276 (8%) Query: 76 SEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH------ 128 + + + + ++ S++ Q + ++ T R + Sbjct: 6 EAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLEQEHL-QLNTFEYRDARNYLSYLYSNHL 64 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +S + ++++R +++ + + INP + + PK++ + + +E+M+ E Sbjct: 65 KRTSVSRKISTLRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEALFKTVEE 124 Query: 189 GS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMK 243 + + R+ E L +G+R S+ Q + K V + Sbjct: 125 DTSKSLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVFGKGSKERFVPFGAYCRQ 184 Query: 244 LLAMTPIGKETFFINNDKQ--------KMNATQFSIWFKAKATK-AGV-NKSAHGVRKFS 293 + + N + + AGV H +R Sbjct: 185 SIENYLEHFKPIQSCNHDFLIVNMKGEAITERGVRYVLNDIVKRTAGVSEIHPHKLRHTF 244 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + GA + + G + YT +++ Sbjct: 245 ATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQ 280 >gi|329956554|ref|ZP_08297151.1| tyrosine recombinase XerD [Bacteroides clarus YIT 12056] gi|328524451|gb|EGF51521.1| tyrosine recombinase XerD [Bacteroides clarus YIT 12056] Length = 316 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 54/296 (18%), Positives = 103/296 (34%), Gaps = 24/296 (8%) Query: 74 LISEYRKSAHWGS-LAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKH-- 128 +I +Y++ L+ N+ ++ + +++ + D +T ++ Sbjct: 16 IIRKYQQYIRLEKALSSNTFDAYMTDLQKLLHFLDGENIDIPDVTPDDLQRFAAGLHDIG 75 Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---- 183 P S + L+ ++ F + V +Y+ +P +E PK + T E++ + Sbjct: 76 IHPRSQARILSGIKSFFHFLVIADYLEADPSELLEGPKIGFKIPEVLTIEEIDRIISTVD 135 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFM 242 EG + R E L GLR S+ C + L F K V + + Sbjct: 136 MEKKEGQRNRAILETLYSCGLRVSELCNLKISDLYFEEGFIKVEGKGSKQRLVPISPRAI 195 Query: 243 KLLAMTPI----------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 K + ++ F+ +++ K A KAG+ K S H R Sbjct: 196 KEIKYWFADRNLGKIKKGYEDYVFLARWGNRISRIMVFHMIKELAEKAGITKNISPHTFR 255 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346 AT + GA + G +++ E YT DR L + + Sbjct: 256 HSFATHLLEGGANLRAIQCMLGHESIATTEIYTH-IDRNMLRSEIIEHHPRNIKYR 310 >gi|307289187|ref|ZP_07569143.1| tyrosine recombinase XerC [Enterococcus faecalis TX0109] gi|306499896|gb|EFM69257.1| tyrosine recombinase XerC [Enterococcus faecalis TX0109] gi|315164096|gb|EFU08113.1| tyrosine recombinase XerC [Enterococcus faecalis TX1302] Length = 299 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 34/280 (12%), Positives = 83/280 (29%), Gaps = 27/280 (9%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD------FDYRKITTKHIRSGVE 124 L + Y + ++ +++ + + S + Sbjct: 6 WPELFARYL--IVERGYSEKTKKAYQEDIQHFFSFLKTSGSDNYLTVEHLDVRAYLSELY 63 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 ++++ +S + + S+R +++ ++ E + NP V K++ R + +++M Sbjct: 64 DQEYSRNSISRKIASLRSFYQFLLKNEAIQENPFSYVHMKKKQLRLPRFFYEKEMDALFE 123 Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD 239 + + E L +G+R S+ V + + K V Sbjct: 124 SAQGEQPLDLRNQALLEVLYGTGIRVSECANLTVDAVDFQASVLLVHGKGNKDRYVPFGS 183 Query: 240 GFMKLLAMT------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285 L F+N+ +++ T K+ + Sbjct: 184 FAQDALKDYLENGRALLMTKYQKKHPYVFVNHHGEQITPTGIEYVLNQLIKKSSLNAEIH 243 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 H +R AT + GA + G + + Y Sbjct: 244 PHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHV 283 >gi|325962900|ref|YP_004240806.1| tyrosine recombinase XerD [Arthrobacter phenanthrenivorans Sphe3] gi|323468987|gb|ADX72672.1| tyrosine recombinase XerD [Arthrobacter phenanthrenivorans Sphe3] Length = 334 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 51/284 (17%), Positives = 93/284 (32%), Gaps = 35/284 (12%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHT- 129 I++Y + LA N+ ++ + R G + IT H+ V + Sbjct: 31 ITDYLQHMGVERGLAANTLSAYRRDLARYSRYLAAQGCSSPQDITRHHVTGYVRALSDGS 90 Query: 130 -------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 SA + + ++R L K+ + Y +P V P + + +++ + Sbjct: 91 DGGSALGVRSAARTVVAVRGLHKFWALEGYTPADPASEVHPPMPGKRLPKAISVDEVTRI 150 Query: 183 KSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-----------------NNI 221 + + R EFL +G R S++ V + + Sbjct: 151 LEAAGTDTATGLRDRALLEFLYSTGARISEAVGLDVDDISLDTGESGPAIVRLFGKGSKE 210 Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 + G LLA G F+N +++ KA A KA Sbjct: 211 RLVPLGSYGARALDAYLVRGRPLLAAKGKGTPALFLNARGGRISRQSAWTILKAAAGKAQ 270 Query: 282 V--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + + S H +R AT + GA + G +V + YT Sbjct: 271 ITKDVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYT 314 >gi|237711564|ref|ZP_04542045.1| integrase [Bacteroides sp. 9_1_42FAA] gi|237725982|ref|ZP_04556463.1| integrase [Bacteroides sp. D4] gi|265752992|ref|ZP_06088561.1| tyrosine recombinase XerD [Bacteroides sp. 3_1_33FAA] gi|229435790|gb|EEO45867.1| integrase [Bacteroides dorei 5_1_36/D4] gi|229454259|gb|EEO59980.1| integrase [Bacteroides sp. 9_1_42FAA] gi|263236178|gb|EEZ21673.1| tyrosine recombinase XerD [Bacteroides sp. 3_1_33FAA] Length = 308 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 53/306 (17%), Positives = 112/306 (36%), Gaps = 25/306 (8%) Query: 65 RKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRS 121 ++ T ++ +YR+ SL+ N+ ++ + D+++ + + + +++ Sbjct: 2 KRTEKT-DKILVKYRQYLKLEKSLSDNTVDAYLTDLDKLLAYLTLENINILDVRLENLED 60 Query: 122 GVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 P S + L+ +R +++ + ++Y+ +P +E P+ + T E+ Sbjct: 61 FSAGLHDIGIHPRSQARILSGIRSFYRFLIMEDYLESDPTELLESPQTGFKLPEVMTVEE 120 Query: 179 MQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI---------- 224 + G+ + R E L GLR S+ C + L I Sbjct: 121 IDLLIGSIDRGTKEGQRNRAILETLYSCGLRVSELCNLKLSELYFEEGFIKVEGKGSKQR 180 Query: 225 -KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 I + L L+ + P ++ FI+N + ++ K A + G+ Sbjct: 181 LVPISPRAIKEIRLYFTDRNLMKIKPGFEDFVFISNFGKNISRIMVFHIIKELAERIGLK 240 Query: 284 K--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 K S H R AT + GA + G +++ E YT DR L + Sbjct: 241 KKISPHTFRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYTH-IDRNMLRSEIIEHHPR 299 Query: 342 VVDSDD 347 + + Sbjct: 300 NIKFRE 305 >gi|138895282|ref|YP_001125735.1| integrase/recombinase [Geobacillus thermodenitrificans NG80-2] gi|134266795|gb|ABO66990.1| Integrase/recombinase [Geobacillus thermodenitrificans NG80-2] Length = 301 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 37/294 (12%), Positives = 94/294 (31%), Gaps = 30/294 (10%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKIT----TKHIRS 121 + I E+ + ++N+ + IT + I+ Sbjct: 3 FRQAIDEFVLYLQIEKNYSLNTVDGYAYDLRCFENFLVQHGYSVQLNSITKTHVRRFIQH 62 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT-----K 176 + P + + ++ ++ K+ V++ + + + ++ PK ++ + K Sbjct: 63 QITKENVKPRTIYRRISCLKSFSKYCVKENLIDNDFMIGIDTPKTDSKLPTYMSLSELRK 122 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 + + L F+ L +G+R S+ + + + +I+ G + Sbjct: 123 LFHFLEQDNSRMAMRNHLLFKLLATTGMRRSEIVELTWEQIDLSNNTIRIYGKGKKERLL 182 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKM---------NATQFSIWFKAKATKAGVN---K 284 + L + + + + Q + N FK KAG+ Sbjct: 183 PLHPMVVPLMKSYMESLEEYQLHPSQPVFLNKNGKKLNPRGLHKIFKDILQKAGLPPQRF 242 Query: 285 SAHGVRKFSATISADAG---ATAHELMATYGWKTVDQAETYTKG-ADRIRLGIK 334 S H +R AT+ + G +++ + YT ++ + I+ Sbjct: 243 SLHHLRHTFATLLIQENKENVDLRTVQELLGHESLVTTQVYTHVDFEQKKKAIE 296 >gi|91201862|emb|CAJ74922.1| similar to site-specific recombinase [Candidatus Kuenenia stuttgartiensis] Length = 295 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 45/286 (15%), Positives = 95/286 (33%), Gaps = 24/286 (8%) Query: 72 KWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGV---E 124 LI + A+N+ ++S I+ + I I S + + Sbjct: 2 DELIDSFINYLLVECGSAMNTIHGYQSDLQLFIKFLLGKNIHDFSTIRPNIITSFIISEK 61 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 R + +S + + S+R+ +K+ + + + NP +S++ PK + ++ S Sbjct: 62 HRGQSVNSINRAIVSIRMFYKFLILEGKLQKNPLVSLDSPKLWKKLPYVVPIHKIEDLLS 121 Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-----KTGTIITV 235 G + + E L +G R S+ + + IK + + + Sbjct: 122 AADVKTKLGIRNKAILELLYATGARVSEVATISLNGINLEYGYIKCKGKGSKERIVPLGK 181 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQ------KMNATQFSIWFKAKATKAGVN--KSAH 287 + + L + ++ + + K A KAG+ S H Sbjct: 182 KASIAIQEYLTTVRPQIKDSQNSHYLFLSRTGRPLRRENIWLIVKNCALKAGITEAISPH 241 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 +R AT + GA + G ++ + YT + I Sbjct: 242 KLRHSFATHLLENGADLRAVQEMLGHVSISTTQIYTHVNKQHLKAI 287 >gi|325285115|ref|YP_004260905.1| Tyrosine recombinase xerC [Cellulophaga lytica DSM 7489] gi|324320569|gb|ADY28034.1| Tyrosine recombinase xerC [Cellulophaga lytica DSM 7489] Length = 298 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 47/272 (17%), Positives = 92/272 (33%), Gaps = 25/272 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRK----ITTKHIRSGVESRKHT--PSSAIQFLT 138 L NS ++ +++I + + I+ + + + + P S + ++ Sbjct: 18 RGLMENSITNYVLDVEKLITFLNKKNITESPISISKETTQQFIYEISASINPRSQARIIS 77 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRL 194 ++ F + + ++Y A NP +E PK + + E++ EG + R Sbjct: 78 GLKSFFNYLIFEDYRADNPMDLIEAPKIGRKLPDTLSVEEINDLIDAIDLSKPEGERNRA 137 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK------------TQKTGTIITVELPDGFM 242 E L GLR S+ + L I+ D Sbjct: 138 MLETLYGCGLRVSELTNLRLSDLFFKEDFIRVTGKGDKQRFVPISNINKKYINIYKDEIR 197 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADA 300 L + ++ F+N +++ K A G+ K+ H +R AT + Sbjct: 198 NHLNIKKGFEDILFLNRRGRQLTRAMIFTIIKQLAETIGLKKTISPHTLRHSFATHLLEN 257 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLG 332 GA + G +++ E Y DR L Sbjct: 258 GADLRAIQQMLGHESITTTEVYVH-IDRKHLS 288 >gi|229061434|ref|ZP_04198779.1| Tyrosine recombinase xerC [Bacillus cereus AH603] gi|228717857|gb|EEL69505.1| Tyrosine recombinase xerC [Bacillus cereus AH603] Length = 301 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 42/284 (14%), Positives = 94/284 (33%), Gaps = 28/284 (9%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHT 129 L Y + + + + S+++ + ++ G + +T +R + + Sbjct: 10 QLFVGYLQIE--RNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYADVRLYLTTLHDQ 67 Query: 130 ---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 S + ++S+R L+++ +R+ Y NP PK++ + E++++ Sbjct: 68 KLARKSVARKVSSLRSLYRFLMREGYQKDNPFALASLPKKELSIPKFLYAEELEELFEVS 127 Query: 187 ----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGF 241 G + + E + +G+R S+ + + + +I K + Sbjct: 128 DTGAPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFGSYA 187 Query: 242 MKLLAMTPI------------GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287 L F+N + + KA + S H Sbjct: 188 QDALITYIENGRKQLAQKTEEQSHMVFLNAKGKPLTDQGVRYVLNELIKKASLTMRISPH 247 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +R AT D GA + G + + + YT + RL Sbjct: 248 MLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTH-VSKERL 290 >gi|163941569|ref|YP_001646453.1| site-specific tyrosine recombinase XerC [Bacillus weihenstephanensis KBAB4] gi|229013014|ref|ZP_04170179.1| Tyrosine recombinase xerC [Bacillus mycoides DSM 2048] gi|229134638|ref|ZP_04263448.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-ST196] gi|229168570|ref|ZP_04296293.1| Tyrosine recombinase xerC [Bacillus cereus AH621] gi|163863766|gb|ABY44825.1| tyrosine recombinase XerC [Bacillus weihenstephanensis KBAB4] gi|228614976|gb|EEK72078.1| Tyrosine recombinase xerC [Bacillus cereus AH621] gi|228648899|gb|EEL04924.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-ST196] gi|228748268|gb|EEL98128.1| Tyrosine recombinase xerC [Bacillus mycoides DSM 2048] Length = 301 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 42/287 (14%), Positives = 96/287 (33%), Gaps = 27/287 (9%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126 +K L+ + + + + S+++ + ++ G + +T +R + + Sbjct: 5 VKKLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYADVRLYLTTL 64 Query: 127 KHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 S + ++S+R L+++ +R+ Y NP PK++ + E++++ Sbjct: 65 HDQKLARKSVARKVSSLRSLYRFLMREGYQKDNPFALASLPKKELSIPKFLYAEELEELF 124 Query: 184 SFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238 G + + E + +G+R S+ + + + +I K + Sbjct: 125 EVSDTGAPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFG 184 Query: 239 DGFMKLLAMTPI------------GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284 L F+N + + KA + Sbjct: 185 SYAQDALITYIENGRKQLAQKTEEQSHMVFLNAKGKPLTDQGVRYVLNELIKKASLTMRI 244 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 S H +R AT D GA + G + + + YT + RL Sbjct: 245 SPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTH-VSKERL 290 >gi|118579558|ref|YP_900808.1| phage integrase family protein [Pelobacter propionicus DSM 2379] gi|118502268|gb|ABK98750.1| phage integrase family protein [Pelobacter propionicus DSM 2379] Length = 367 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 47/354 (13%), Positives = 104/354 (29%), Gaps = 34/354 (9%) Query: 9 PFVTKERTRHGKIIYY-FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN---SP 64 P + R GK + + G++ + Y+ A + Sbjct: 6 PGIY----RRGKTFWITYMGVDGKQQWESTRSKLKADADYLLACRKKEVAEGITPVTFNR 61 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 +K TT L +Y + S ++ R G+ IT + + Sbjct: 62 KKYTTTFDQLAEKYLEYCKAQ----RDYKSKAGRVRRLQRTFGEMRLIDITLEELERYQS 117 Query: 125 SRKH----------------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168 +R +P++ + LT+++ +F A + + + +V + + Sbjct: 118 ARCTEAKQPKKEGGVSSGAVSPATVNRELTALKNMFTKAEQWGLIPDSTLKTVRKVRLTK 177 Query: 169 EGIRPWTKEDMQQFKSFWSEGSQ-PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227 E R + + + S+ R F L +G R + H+ I+ Sbjct: 178 ENNRRLRFLAVAEMTALVDSCSRGLREIVVFALNTGCRRGEILSLTWDHVDLKHGFIRIA 237 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN---ATQFSIWFKAKATKAGV-N 283 + + ++P + + F +A + N Sbjct: 238 DSKNGESRDIPINAALADMFKGVVRRIDSPYVFTNPDTGTRYQDVKRSFATACRRAAIMN 297 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNS 336 H +R A+ G + G K++ Y+ A D ++ ++ Sbjct: 298 FHFHDLRHTFASHLVMNGVDLTTVSRLLGHKSLTMTLRYSHLAPDHLKKAVERL 351 >gi|29348252|ref|NP_811755.1| integrase [Bacteroides thetaiotaomicron VPI-5482] gi|253569382|ref|ZP_04846792.1| integrase [Bacteroides sp. 1_1_6] gi|298386055|ref|ZP_06995612.1| tyrosine recombinase XerD [Bacteroides sp. 1_1_14] gi|29340155|gb|AAO77949.1| integrase [Bacteroides thetaiotaomicron VPI-5482] gi|251841401|gb|EES69482.1| integrase [Bacteroides sp. 1_1_6] gi|298261283|gb|EFI04150.1| tyrosine recombinase XerD [Bacteroides sp. 1_1_14] Length = 319 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 51/298 (17%), Positives = 103/298 (34%), Gaps = 25/298 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKH-- 128 +I +Y++ SL+ N+ ++ + D+++ D ++ ++ Sbjct: 16 IIRKYQQYLKLEKSLSPNTLDAYLTDLDKLMSFLTLEGIDVLEVCLSDLQRFAAGLHDIG 75 Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---- 183 P S + L+ ++ F++ + +Y+ +P +E PK + T E++ Sbjct: 76 IHPRSQARILSGIKSFFRFLIMADYLEADPSELLEGPKIGLKLPEVLTVEEIDNIISSVD 135 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFM 242 +EG + R E L GLR S+ + L + F K V + + Sbjct: 136 RSKAEGQRNRAILETLYSCGLRVSELVSLKLSDLYFDEGFIKVEGKGSKQRLVPISPRAI 195 Query: 243 KLLAMTPIGKETFFINNDKQKM-----------NATQFSIWFKAKATKAGVNK--SAHGV 289 + + + + + D + + K A AG+ K S H Sbjct: 196 NEIKLYFLDRNRIEVKKDYEDFVFVSQRRGKSLSRIMIFHMIKELAQNAGITKNISPHTF 255 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347 R AT + GA + G +++ E YT DR L + + Sbjct: 256 RHSFATHLLEGGANLRAIQCMLGHESIATTEIYTH-IDRNMLRSEIIEHHPRNIKYRR 312 >gi|118444203|ref|YP_878098.1| tyrosine recombinase XerD [Clostridium novyi NT] gi|118134659|gb|ABK61703.1| tyrosine recombinase XerD [Clostridium novyi NT] Length = 292 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 45/280 (16%), Positives = 103/280 (36%), Gaps = 20/280 (7%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHT 129 + + +Y + L+ N+ ++ + + + D I + V++ K Sbjct: 2 EEYLKQYIEDMRKKELSKNTIEAYNRDIIKFCKFLKEREEDILDADMVSIMAYVQTLKKE 61 Query: 130 PSS---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + I+ + S+R +K+ +R NP ++ E PK K T +++++F + Sbjct: 62 KKADSSIIRSIVSIRNFYKYLIRMGKDVDNPLINYEVPKNKRTIPEILTVDEVEKFLNAP 121 Query: 187 ----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KTGTIITVELPDGF 241 +G + + E + +G++ S+ R + + + +K + + + Sbjct: 122 DCSEYKGIRDKAMLELMYATGMKVSELLRVTIFDINLKLCYVKCKGVKDKERIIPIGSYA 181 Query: 242 MKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRK 291 + L ++ F N KM F K A AG+NK + +R Sbjct: 182 VNCLNEYLNVRDKMSAANSETLFCNLRGGKMTRQGFWKIVKKYAKDAGINKKIDSYTLRH 241 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 A GA + G T+ + Y+ + + ++ Sbjct: 242 SFAVHLLQNGADIKSVQELLGHNTIATTQIYSSISKQNKI 281 >gi|78045063|ref|YP_359695.1| phage integrase family site specific recombinase [Carboxydothermus hydrogenoformans Z-2901] gi|77997178|gb|ABB16077.1| site-specific recombinase, phage integrase family [Carboxydothermus hydrogenoformans Z-2901] Length = 320 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 40/287 (13%), Positives = 93/287 (32%), Gaps = 19/287 (6%) Query: 55 TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYR 112 PK + P T + L+ E+ + + + + ++ + Y Sbjct: 1 MPKSNVLRLPLSLKITWQDLLDEFILVKEAEGRSARTIHDYRFHIERFFNRFPHALESYT 60 Query: 113 KITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 + ++ E +PS+ + L ++ F W ++ Y+ NP ++R K IR Sbjct: 61 SLRQSVLKYFTEK--ASPSTRNKRLAHLKAFFSWCAKEGYIPANPAEGIKRAKEDITNIR 118 Query: 173 PWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228 + E++++ G + + +G+R + + L I+ + Sbjct: 119 HVSLEEVKKLLQQPDKKTYTGLRDYCLMLVQIDTGVRPGELLQVRGSDLSLESREIRIRP 178 Query: 229 TGTI----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS-------IWFKAKA 277 T+ + + +A + + ++ + + + Sbjct: 179 EVAKTRIGRTLIITPFTAQQIARFLRIRPEHWGDDVPLFASENGITLNENDWAKRVRQYC 238 Query: 278 TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 KAGV + +G+R A AG L G + Y + Sbjct: 239 KKAGVKVTPYGLRHTFAIEFLKAGGDPFSLQRILGHTDLTMTRRYVR 285 >gi|42782923|ref|NP_980170.1| site-specific tyrosine recombinase XerC [Bacillus cereus ATCC 10987] gi|42738850|gb|AAS42778.1| site-specific recombinase, phage integrase family [Bacillus cereus ATCC 10987] Length = 299 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 43/287 (14%), Positives = 97/287 (33%), Gaps = 27/287 (9%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126 +K L+ + + + + S+++ + ++ G + IT +R + + Sbjct: 3 VKKLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFMEREGISSFLDITYADVRLYLTTL 62 Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 S + ++S+R L+++ +R+ Y NP PK++ + E++++ Sbjct: 63 HDEKLARKSVARKVSSLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELF 122 Query: 184 SFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238 G+ + + E + +G+R S+ + + + +I K + Sbjct: 123 KVSDTGTPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFG 182 Query: 239 DGFMKLLAMTPI------------GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284 L F+N + + KA + Sbjct: 183 SYAQDALITYIENGRKQLAKKTEEQSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRI 242 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 S H +R AT D GA + G + + + YT + RL Sbjct: 243 SPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTH-VSKERL 288 >gi|222097276|ref|YP_002531333.1| site-specific tyrosine recombinase xerc [Bacillus cereus Q1] gi|229197941|ref|ZP_04324656.1| Tyrosine recombinase xerC [Bacillus cereus m1293] gi|221241334|gb|ACM14044.1| site-specific integrase/recombinase [Bacillus cereus Q1] gi|228585520|gb|EEK43623.1| Tyrosine recombinase xerC [Bacillus cereus m1293] gi|324327728|gb|ADY22988.1| site-specific tyrosine recombinase XerC [Bacillus thuringiensis serovar finitimus YBT-020] Length = 299 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 43/287 (14%), Positives = 95/287 (33%), Gaps = 27/287 (9%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126 +K L+ + + + + S+++ + ++ G + IT +R + + Sbjct: 3 VKKLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFMEREGISSFLDITYADVRLYLTTL 62 Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----M 179 S + ++S+R L+++ +R+ Y NP PK++ + E+ Sbjct: 63 HDEKLARKSVARKVSSLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELF 122 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238 + + G + + E + +G+R S+ + + + +I K + Sbjct: 123 EVSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFG 182 Query: 239 DGFMKLLAMTPI------------GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284 L F+N + + KA + Sbjct: 183 SYAQDALITYIENGRKQLAKKTEEQSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRI 242 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 S H +R AT D GA + G + + + YT + RL Sbjct: 243 SPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTH-VSKERL 288 >gi|327312733|ref|YP_004328170.1| putative tyrosine recombinase XerD [Prevotella denticola F0289] gi|326945335|gb|AEA21220.1| putative tyrosine recombinase XerD [Prevotella denticola F0289] Length = 315 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 48/276 (17%), Positives = 95/276 (34%), Gaps = 23/276 (8%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVE---S 125 K ++ +R+ + N+ ++ D+++R +T + + Sbjct: 8 KDIVGRFRRYLKLEKGCSPNTLDAYLHDVDKLLRYLAGEQVSVTDVTLEQLEHFAASVSD 67 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 S + L+S+R +++ V Y+ +P +E PK+ + ++ + Sbjct: 68 LGIGARSLARILSSVRQFYRFLVLDGYMEADPTELLESPKQPDHLPEVLSTAEVDLLEQA 127 Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDG 240 EG + R E L GLR S+ + L + ++ V + Sbjct: 128 VDLTKWEGHRNRAIIEVLFSCGLRVSELTHLKLSDLYRDEQFVRVMGKGSKERLVPISPR 187 Query: 241 FMKLLAMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKAGVNKS--AHG 288 + L + I N + T I K A +AG+ K+ H Sbjct: 188 ALDELDCWFADRNVMKIKSGEEDYVFLNRRGHHLTRTMILIMIKRYAVEAGIRKTISPHT 247 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT + GA + A G +++ E YT Sbjct: 248 LRHSFATSLLEGGADLRAIQAMLGHESIGTTEIYTH 283 >gi|255011423|ref|ZP_05283549.1| putative tyrosine recombinase [Bacteroides fragilis 3_1_12] gi|313149239|ref|ZP_07811432.1| integrase [Bacteroides fragilis 3_1_12] gi|313138006|gb|EFR55366.1| integrase [Bacteroides fragilis 3_1_12] Length = 319 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 55/296 (18%), Positives = 105/296 (35%), Gaps = 24/296 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKH-- 128 +I +Y++ SL+ N+ ++ + D+++ D D +I+ K ++ Sbjct: 16 IIKKYQQYLKLEKSLSKNTLDAYLTDLDKLLNFLSDEGVDILEISLKDLQRFAAGLHDIG 75 Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185 S + ++ ++ F + + +Y+ +P +E PK + T E++ S Sbjct: 76 IHARSQARIISGIKSFFHFLIMADYIEADPSELLEGPKIGFKLPEVLTVEEIDHIISTVD 135 Query: 186 --WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFM 242 +EG + R E L GLR S+ + L N F K V + + Sbjct: 136 LSKNEGQRNRAILETLYSCGLRVSELTNLKLSDLYFNEGFIKVEGKGSKQRLVPISPRAI 195 Query: 243 KLLAMTPIGKETFFINNDK----------QKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 + + + + I D ++ K A AG+ K S H R Sbjct: 196 QEIKYYFMDRNRINIKKDYEDYLFLSRRGTHLSRIMIFHLIKELADMAGITKNISPHTFR 255 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346 AT + GA + G +++ E YT DR L + + Sbjct: 256 HSFATHLLEGGANLRAIQCMLGHESISTTEIYTH-IDRNMLRSEIIEHHPRNIKYR 310 >gi|239827068|ref|YP_002949692.1| integrase [Geobacillus sp. WCH70] gi|239807361|gb|ACS24426.1| integrase family protein [Geobacillus sp. WCH70] Length = 301 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 37/294 (12%), Positives = 94/294 (31%), Gaps = 30/294 (10%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKIT----TKHIRS 121 + I E+ + ++N+ + IT + I+ Sbjct: 3 FRQAIDEFVLYLQIEKNYSLNTVDGYAYDLRCFENFLVQHGYSVQLNNITKTHVRRFIQH 62 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT-----K 176 + P + + ++ ++ K+ V++ + + + ++ PK ++ + K Sbjct: 63 QITKENVKPRTIYRRISCLKSFSKYCVKENLIDNDFMIGIDTPKTDSKLPTYMSLSELRK 122 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 + + L F+ L +G+R S+ + + + +I+ G + Sbjct: 123 LFHFLEQDNSRMAMRNHLLFKLLATTGMRRSEIVELTWEQIDLSNNTIRIYGKGKKERLL 182 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKM---------NATQFSIWFKAKATKAGVN---K 284 + L + + + + Q + N FK KAG+ Sbjct: 183 PLHPMVVPLMKSYMESLEEYQLHPSQPVFLNKNGKKLNPRGLHKIFKDILQKAGLPPQRF 242 Query: 285 SAHGVRKFSATISADAG---ATAHELMATYGWKTVDQAETYTKG-ADRIRLGIK 334 S H +R AT+ + G +++ + YT ++ + I+ Sbjct: 243 SLHHLRHTFATLLIQENKENVDLRTVQELLGHESLVTTQVYTHVDFEQKKKAIE 296 >gi|154686593|ref|YP_001421754.1| site-specific tyrosine recombinase XerD [Bacillus amyloliquefaciens FZB42] gi|154352444|gb|ABS74523.1| XerD [Bacillus amyloliquefaciens FZB42] Length = 296 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 39/269 (14%), Positives = 94/269 (34%), Gaps = 24/269 (8%) Query: 85 GSLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVESRKHTPS---SAIQFL 137 L+ N+ +S+E + + +T HI ++ K + ++ + L Sbjct: 16 RGLSQNTMMSYERDLKSYSLFLTETLQITSWNDVTRLHIIQYLKHIKDSGKSGKTSARHL 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193 S+R ++ +R++ +P + +E K + + ++++ G + + Sbjct: 76 ASIRSFHQFLLREKAADKDPSVHIETQKTERTLPKVLALHEVERLLDTPKLDSPFGLRDK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252 E L +G+R S+ + + + ++ V + + + Sbjct: 136 AMLELLYATGIRVSEMIELKLSDVHLTMGFVRCFGKGRKERIVPIGEAASHAIEAYIEKA 195 Query: 253 ETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 F+N+ ++++ F K A +AG+ K + H +R AT + Sbjct: 196 RGKLLKKNVTEALFLNHHGRQISRQGFWKNLKKIALEAGIKKELTPHTLRHSFATHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329 GA + G + + YT Sbjct: 256 GADLRAVQEMLGHADISTTQIYTHVTKTR 284 >gi|315023982|gb|EFT36984.1| tyrosine recombinase XerD [Riemerella anatipestifer RA-YM] Length = 303 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 48/280 (17%), Positives = 92/280 (32%), Gaps = 26/280 (9%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGVESRKHT 129 I ++ + + +L+ N+ ++ ++ K D I+ + I+ + Sbjct: 7 IQDFANALKFEKNLSNNTIDAYTRDIKKLQYFAENKLNDTSALDISYEQIQEYLYQISKN 66 Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 S ++++S++ FK+ E A NP +E PK E+++ Sbjct: 67 YTNERSQSRWISSIKAFFKFLHEDELRADNPARLLETPKLGLYLPDTLNFEEIESLIEAI 126 Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ------------KTG 230 G + E L GLR S+ + +L I + Sbjct: 127 DKTTSLGKRNHTIIETLYGCGLRVSELVELKISNLNFEEEFIIVDGKGGKTRLVPLAQYT 186 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288 + + + + P + F+N K+ I K A +A + K S H Sbjct: 187 AELIKDYLLEVRSEIKINPKHSDILFLNRRGSKLTRVMVFIIIKDLALQANIKKNISPHT 246 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 R AT GA + G ++ E YT + Sbjct: 247 FRHSFATHLLKNGADLRYIQEMLGHSSITTTEIYTHLDNE 286 >gi|182418976|ref|ZP_02950232.1| tyrosine recombinase XerC [Clostridium butyricum 5521] gi|237668918|ref|ZP_04528902.1| tyrosine recombinase XerC [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377259|gb|EDT74827.1| tyrosine recombinase XerC [Clostridium butyricum 5521] gi|237657266|gb|EEP54822.1| tyrosine recombinase XerC [Clostridium butyricum E4 str. BoNT E BL5262] Length = 334 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 39/260 (15%), Positives = 86/260 (33%), Gaps = 15/260 (5%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQ 135 Y + + + + ++ + + IT IR + PS+ Sbjct: 61 YLQVRKLENYSQATLSNYMYTLRKFASFI-NKPVGTITKNDIRYYMAINFTELKPSTVNN 119 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195 + + F+W ++E + NP S++ + + T E++++ + + + R Sbjct: 120 KIACFKAFFQWLEQEEMIPKNPARSLDETRLPKRLRKSLTAEELERVRIACVDN-RDRAL 178 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMTPIGKET 254 EFL+ +G R S+ ++ L N + K TV D + Sbjct: 179 VEFLVATGCRVSEVVSCNIKDLDLNDNTLKVIGKGDKERTVCFTDKAKLYIRKYIEEDRQ 238 Query: 255 FFI--------NNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATA 304 +++ + +A + H +R AT+S +GA Sbjct: 239 KDNEDALFVSTKFPYNRISRRSIEVAISKIGIRANLGKPLFPHLLRHTMATLSLQSGADI 298 Query: 305 HELMATYGWKTVDQAETYTK 324 + + G T + Y + Sbjct: 299 TIIQSLLGHTTPSTTQIYAE 318 >gi|57651821|ref|YP_186127.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus COL] gi|87162376|ref|YP_493842.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194960|ref|YP_499760.1| site-specific recombinase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151221374|ref|YP_001332196.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus str. Newman] gi|161509418|ref|YP_001575077.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142042|ref|ZP_03566535.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253731871|ref|ZP_04866036.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733510|ref|ZP_04867675.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus TCH130] gi|258452551|ref|ZP_05700557.1| tyrosine recombinase xerC [Staphylococcus aureus A5948] gi|262048146|ref|ZP_06021033.1| hypothetical protein SAD30_1922 [Staphylococcus aureus D30] gi|262051314|ref|ZP_06023537.1| hypothetical protein SA930_2036 [Staphylococcus aureus 930918-3] gi|282920496|ref|ZP_06328217.1| tyrosine recombinase XerC [Staphylococcus aureus A9765] gi|284024245|ref|ZP_06378643.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus 132] gi|294848247|ref|ZP_06788994.1| tyrosine recombinase XerC [Staphylococcus aureus A9754] gi|304381184|ref|ZP_07363837.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|81694641|sp|Q5HGI0|XERC_STAAC RecName: Full=Tyrosine recombinase xerC gi|123003475|sp|Q2FZ30|XERC_STAA8 RecName: Full=Tyrosine recombinase xerC gi|123486192|sp|Q2FHI6|XERC_STAA3 RecName: Full=Tyrosine recombinase xerC gi|172048862|sp|A6QGF2|XERC_STAAE RecName: Full=Tyrosine recombinase xerC gi|189030085|sp|A8Z3T2|XERC_STAAT RecName: Full=Tyrosine recombinase xerC gi|57286007|gb|AAW38101.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus COL] gi|87128350|gb|ABD22864.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202518|gb|ABD30328.1| site-specific recombinase, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150374174|dbj|BAF67434.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus str. Newman] gi|160368227|gb|ABX29198.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253724281|gb|EES93010.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728564|gb|EES97293.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus TCH130] gi|257859769|gb|EEV82611.1| tyrosine recombinase xerC [Staphylococcus aureus A5948] gi|259160689|gb|EEW45710.1| hypothetical protein SA930_2036 [Staphylococcus aureus 930918-3] gi|259163712|gb|EEW48267.1| hypothetical protein SAD30_1922 [Staphylococcus aureus D30] gi|269940743|emb|CBI49125.1| putative integrase/recombinase [Staphylococcus aureus subsp. aureus TW20] gi|282594158|gb|EFB99145.1| tyrosine recombinase XerC [Staphylococcus aureus A9765] gi|294825047|gb|EFG41469.1| tyrosine recombinase XerC [Staphylococcus aureus A9754] gi|302751075|gb|ADL65252.1| site-specific recombinase XerC [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340167|gb|EFM06108.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315198492|gb|EFU28821.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus CGS01] gi|320140931|gb|EFW32778.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus MRSA131] gi|320144353|gb|EFW36119.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus MRSA177] gi|329313922|gb|AEB88335.1| Tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus T0131] gi|329727838|gb|EGG64289.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus 21189] Length = 298 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 36/276 (13%), Positives = 88/276 (31%), Gaps = 23/276 (8%) Query: 76 SEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH------ 128 + + + + ++ S++ Q + ++ T R + Sbjct: 6 DAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLEQEHL-ELNTFEYRDARNYLSYLYSNHL 64 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +S + ++++R +++ + + INP + + PK++ + + +E+M+ E Sbjct: 65 KRTSVSRKISTLRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEALFKTVEE 124 Query: 189 GS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMK 243 + + R+ E L +G+R S+ Q + K V + Sbjct: 125 DTSKNLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVLGKGSKERFVPFGAYCRQ 184 Query: 244 LLAMTPIGKETFFINNDKQ--------KMNATQFSIWFKAKATK-AGV-NKSAHGVRKFS 293 + + N + + AGV H +R Sbjct: 185 SIENYLEHFKPIQSCNHDFLIVNMKGEAITERGVRYVLNDIVKRTAGVSEIHPHKLRHTF 244 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + GA + + G + YT +++ Sbjct: 245 ATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQ 280 >gi|289523581|ref|ZP_06440435.1| integrase/recombinase XerD [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503273|gb|EFD24437.1| integrase/recombinase XerD [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 297 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 45/268 (16%), Positives = 93/268 (34%), Gaps = 16/268 (5%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR---K 127 + + + + N+ I++ Q + G + KI HIR+ + Sbjct: 9 VDAFLEYLKYVSGRTDNTVINYAVDLSQFVDYVISQGVEEVEKIEQAHIRAFLRELAAYG 68 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 ++ SS ++ L+S+R + ++ + +P V PK R ED++ Sbjct: 69 YSKSSVLRKLSSLRSWTNFLLQSGKLTSDPTKGVRGPKEPKRLPRALAYEDVKMMLENGP 128 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243 G + R E L GLR ++ + + ++ + V + K Sbjct: 129 NGEFEIRDRAILELLYGCGLRVAELVALDWEDVDIEERWLRVKGKGEKERLVPMGRHAQK 188 Query: 244 LLAMTPIG----KETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISA 298 L + F + +++ A + G+ S H +R AT Sbjct: 189 ALREWQVFLGKLSGPLFPGDGCERIAVRTVHRVVSRAAKRVGLAGVSPHMLRHSFATHML 248 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGA 326 + GA+ L G +++ + Y K + Sbjct: 249 EGGASLRVLQELLGHQSLVTTQRYLKIS 276 >gi|258511054|ref|YP_003184488.1| integrase family protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477780|gb|ACV58099.1| integrase family protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 391 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 55/383 (14%), Positives = 117/383 (30%), Gaps = 48/383 (12%) Query: 9 PFVTKERTRHGKIIYYF---------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE 59 V T+ + Y + + G ++ A SA+ E Sbjct: 4 GRVFSYTTKSNEKKYGYTITITPADPQTGRYPQVTRKGFKSE---RAAKSAMMEHLRSLE 60 Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKH 118 K TL S + SL +R ++ I+ + G KI +H Sbjct: 61 DTPVVHAKSFTLHEWASRWFAD-KSSSLRPWTRRTYHHVLQAYILPELGKMPISKIEARH 119 Query: 119 IRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 I++ + P + + ++ AV+ Y+ +P L+VE P+ KT + Sbjct: 120 IQALYRKLSNRLKPVTVHRIHRVLKTCLLAAVKAGYLDKSPFLNVEPPEHKTPPKPVLSV 179 Query: 177 EDMQQFK-SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------------- 218 D + +A +++G+R + + + Sbjct: 180 NDAFRLLAWLREHRPTSYMAAFLAIHTGMRMGEIAGLQWRDIDLDTGVIQLERTRYRPKG 239 Query: 219 NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ-----------KMNAT 267 F + G+ + + + L ++ + + Sbjct: 240 GQDFLGPPKTFGSRRRIVVTREVVDELRRWKQSQQEIERESWTPESFVVRLPNSAPPSPA 299 Query: 268 QFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKG 325 F+ + + G+ S HG+R AT ++G + G ++ A+ Y Sbjct: 300 SFNNAIQNARKELGLPPVSFHGLRHTHATWLLESGVDLKIVSERLGHSSITITADIYAHV 359 Query: 326 ADR-IRLGIKNSRRISSVVDSDD 347 D R I+ +R+ +++ Sbjct: 360 TDALQREAIEKLQRMMRSRRTNN 382 >gi|150003451|ref|YP_001298195.1| integrase [Bacteroides vulgatus ATCC 8482] gi|254881251|ref|ZP_05253961.1| integrase [Bacteroides sp. 4_3_47FAA] gi|294777667|ref|ZP_06743118.1| tyrosine recombinase XerD [Bacteroides vulgatus PC510] gi|319640253|ref|ZP_07994978.1| integrase [Bacteroides sp. 3_1_40A] gi|149931875|gb|ABR38573.1| integrase [Bacteroides vulgatus ATCC 8482] gi|254834044|gb|EET14353.1| integrase [Bacteroides sp. 4_3_47FAA] gi|294448735|gb|EFG17284.1| tyrosine recombinase XerD [Bacteroides vulgatus PC510] gi|317388028|gb|EFV68882.1| integrase [Bacteroides sp. 3_1_40A] Length = 313 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 52/306 (16%), Positives = 111/306 (36%), Gaps = 25/306 (8%) Query: 65 RKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRS 121 ++ T ++ +Y++ SL+ N+ ++ + D+++ + + + +++ Sbjct: 2 KRTEKT-DKILVKYKQYLKLEKSLSDNTVDAYLTDLDKLLAYLTLENINILDVRLENLED 60 Query: 122 GVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 P S + L+ +R +++ + ++Y+ +P +E P+ + T E+ Sbjct: 61 FSAGLHDIGIHPRSQARILSGIRSFYRFLIMEDYLKADPTELLESPQTGFKLPEVMTVEE 120 Query: 179 MQ----QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTII 233 + EG + R E L GLR S+ C + L F K Sbjct: 121 IDLLIGSIDRSTKEGQRNRAILETLYSCGLRVSELCNLKLSELYFEEGFIKVEGKGSKQR 180 Query: 234 TVELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN 283 V + +K + + + FI+N + ++ K A + G+ Sbjct: 181 LVPISPRAIKEIRLYFTDRNLMKIKPGFEDFVFISNFGKNISRIMVFHIIKELAARIGLK 240 Query: 284 K--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 K S H R AT + GA + G +++ E YT DR L + Sbjct: 241 KKISPHTFRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYTH-IDRNMLRSEIIEHHPR 299 Query: 342 VVDSDD 347 + + Sbjct: 300 NIKFRE 305 >gi|320353406|ref|YP_004194745.1| integrase family protein [Desulfobulbus propionicus DSM 2032] gi|320121908|gb|ADW17454.1| integrase family protein [Desulfobulbus propionicus DSM 2032] Length = 350 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 54/345 (15%), Positives = 111/345 (32%), Gaps = 21/345 (6%) Query: 16 TRHGK--IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 TR GK Y + ++ +A + K + PR+ TL Sbjct: 6 TRKGKKKTTYTITVRVKGYESISRTFDTKGEARIWAAEMEAEMKNQRFKDPRRAHRTLDE 65 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESR--KHTP 130 Y ++ A+ ++ + K G + IT + + R + Sbjct: 66 AFDRYLETVTSQK-ALTTQERERRIAKLLKEKFGRNTLLPDITPSVVAKYRDQRLKSVSA 124 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 + L + LF A ++ + I + + +G + KED + S Sbjct: 125 YAVRLELALLSHLFIKACKEWELPIENPVKSIERPKVPKGRIFFLKEDEAVRLLKECKAS 184 Query: 191 QPRLAFEFLL---YSGLRCSDSCRAGVQHL---------QNNIFSIKTQKTGTIITVELP 238 + + + ++L ++ +R S++ + +T + L Sbjct: 185 RNKRLYPYVLILLHTAMRPSEAAGLKWHQIDFDRRSLTLYITKNEPRTVPLTKTVITALE 244 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATIS 297 D + + + Q + +++F F +A + H +R +A+ Sbjct: 245 DLKKTAFDNEFVFLKGEGKSQHAQNIPSSRFRPSFDRARERAKLPLLHMHDLRHTAASQM 304 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342 AG L A G T+ YT + +L K RI+S+ Sbjct: 305 LMAGTDIRTLAAILGHSTLQMVLRYTHLLNEHKL--KAVDRINSL 347 >gi|182417143|ref|ZP_02948516.1| integrase/recombinase, phage integrase family [Clostridium butyricum 5521] gi|237667184|ref|ZP_04527168.1| phage integrase [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378985|gb|EDT76491.1| integrase/recombinase, phage integrase family [Clostridium butyricum 5521] gi|237655532|gb|EEP53088.1| phage integrase [Clostridium butyricum E4 str. BoNT E BL5262] Length = 332 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 38/258 (14%), Positives = 86/258 (33%), Gaps = 13/258 (5%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV--ESRKHTPSSAIQ 135 Y + + + + ++ + IT IR + PS+ Sbjct: 61 YLQVKKLENYSKATLSNYMYTLRNFSTFI-NKPVSTITKNDIRYFMAINYTNLKPSTVNN 119 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195 L S++ F+W ++E + NP + + + T E++++ + + + R+ Sbjct: 120 KLASLKAFFEWMEQEEIIPKNPARHLSGTRLPKRLRKSLTIEELEKIRLVC-KDVRERVL 178 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKET 254 EFL +G R S+ +A + L + S++ V D L ++ Sbjct: 179 IEFLFATGCRISEVVKANISDLDLSNNSLRVIGKGDKQRIVFFSDKTKLHLKNYIDTRKD 238 Query: 255 FFI------NNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHE 306 +++ + ++ + H +R AT+ +GA Sbjct: 239 NEDALFISSKFPYNRISKRGLELIVSKIGERSNIGKPVFPHLLRHTMATLGLQSGADITT 298 Query: 307 LMATYGWKTVDQAETYTK 324 + G T + Y + Sbjct: 299 IQHLLGHTTPSTTQIYAE 316 >gi|222053854|ref|YP_002536216.1| tyrosine recombinase XerC [Geobacter sp. FRC-32] gi|221563143|gb|ACM19115.1| tyrosine recombinase XerC [Geobacter sp. FRC-32] Length = 294 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 54/297 (18%), Positives = 100/297 (33%), Gaps = 29/297 (9%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVESR 126 K LI ++ + +++ ++ + S + D I+ IR + Sbjct: 2 KKLIDQFCRYLAIERNVSPHTVAGYRSDLTFFLSFLDREKVQADVGSISHLLIRRYIAGL 61 Query: 127 K--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 H SS + L ++R LFK+ +RQ V+ NP V PK++ + T +++ Sbjct: 62 YKDHQKSSIGRQLAAIRALFKYLLRQGLVSKNPAELVSTPKKEKKIPYHLTIDEVTTLVE 121 Query: 185 FWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPD 239 + R E L G+R S+ V ++ N I+ V + Sbjct: 122 APQQEDLLSLRDRAILELLYSCGIRVSELTALNVGEVEMNERLIRVCGKGNKERIVPIGR 181 Query: 240 GFMKLLAMTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAG--VNKSAHGVRK 291 ++ LA + T N ++ + + K S H +R Sbjct: 182 KALEALADYLSARNTPPEEAPLILNARGTRLTSRSVARIVDRYIVKIATMKKISPHTLRH 241 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 AT + GA + G ++ + YT + R+ V D P Sbjct: 242 TFATHMLEGGADLRAIQELLGHASLSTTQKYTHVS---------IDRLMEVYDKAHP 289 >gi|92115127|ref|YP_575055.1| tyrosine recombinase XerD subunit [Chromohalobacter salexigens DSM 3043] gi|91798217|gb|ABE60356.1| tyrosine recombinase XerD subunit [Chromohalobacter salexigens DSM 3043] Length = 295 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 45/272 (16%), Positives = 95/272 (34%), Gaps = 21/272 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRK--HTPSSAIQFLTSM 140 L+ ++ ++ D + + + + + +R+ + P S + L+ + Sbjct: 18 RGLSQHTLAAYRRDLDAWLAHLAARGACLMAPDEQALETFLAARREHYHPRSVARLLSCL 77 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAF 196 R ++WA+ + +V+++P P+ T+ + ++++ + G + R Sbjct: 78 RRFYRWALAEGHVSVDPLADARAPRAVTKLPDTLDEAEVERLLAAPDVELPLGLRDRTML 137 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKETF 255 E L GLR S+ V + ++ K V L + LA Sbjct: 138 EVLYGCGLRVSELVGLTVDAVNLRQGVLRVLGKGDKERLVPLGEEATAWLARYLRQGRGD 197 Query: 256 FINNDKQK----------MNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303 + + + M F K A AG++K S H +R AT + GA Sbjct: 198 LMQDPTRPPLFPGRHDGFMTRQTFWHRIKRHAVSAGIDKPLSPHTLRHAFATHLLNHGAN 257 Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 + G + + YT+ A + Sbjct: 258 LRVVQMLLGHSDLSTTQIYTQVAQARLEALHA 289 >gi|311745481|ref|ZP_07719266.1| tyrosine recombinase XerD [Algoriphagus sp. PR1] gi|126578034|gb|EAZ82254.1| tyrosine recombinase XerD [Algoriphagus sp. PR1] Length = 294 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 33/285 (11%), Positives = 91/285 (31%), Gaps = 26/285 (9%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSGVESR--- 126 I + + + ++ +++ +Q + G+ D + IR+ V Sbjct: 2 IDSFINYLEFEKKSSSHTVLAYRKDLEQFLEFVSVSFGEEDILFVGHSEIRAWVIDLVEN 61 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW-----TKEDMQQ 181 + + ++ + + ++R +K+ +R ++ +P ++ K + + + Sbjct: 62 QLSTTTVNRKIATLRSYYKFLLRSRVISKDPTYKLKSLKNPKKLPEFLQELTISSVLEES 121 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--------- 232 EG + ++ EFL +G+R S+ + + +K Sbjct: 122 VYEENFEGQRDKMVLEFLYLTGVRLSELTGLKWGDINLSEKVVKVLGKRKKERIIPLTNG 181 Query: 233 --ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT--KAGVNKSAHG 288 + + + F ++N+ + + +S H Sbjct: 182 LARNIISYQKVFEERFSKVSQSDYFIVSNNGKPSYPMMIYRVVRKYLDIFAQTSKRSPHV 241 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 +R AT + GA + + G + + YT + + Sbjct: 242 LRHTFATHLLNKGADLNAVKDLLGHSNLAATQVYTHNSLEKLKAV 286 >gi|162452703|ref|YP_001615070.1| site-specific recombinase [Sorangium cellulosum 'So ce 56'] gi|161163285|emb|CAN94590.1| site-specific recombinase [Sorangium cellulosum 'So ce 56'] Length = 323 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 48/286 (16%), Positives = 97/286 (33%), Gaps = 23/286 (8%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126 L + Y +LA + ++ +++ + G + I + + + Sbjct: 30 LATWVDAYLDHLRVERALAPLTLEAYGHDLAKLVAHAEASGITTVEGLDQSLIGTYLVAL 89 Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + SSA + L+++R ++ +R+ + +PC VERP+ + + +++ Sbjct: 90 GQAGISASSAARHLSAVRGFVRFLLRERRIERDPCALVERPRVGRRLPKVLSFDEIALLI 149 Query: 184 SFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELP 238 +G+ + R + +GLR S+ R + + + K G V L Sbjct: 150 EAPEQGTFKGLRDRAMLHVMYAAGLRVSEVVRLKLADIDRRKGIVMALGKGGKRRLVPLG 209 Query: 239 DGFMKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWFKAKATKAGV--NKSAH 287 + + + + T + Q + A G+ S H Sbjct: 210 EPALAAIDAYLELRATHPRSAATQVLFLSPRGGPLTRQAVWKLLGGYARAVGIAKPSSPH 269 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 +R AT + GA + A G V E YT AD Sbjct: 270 KLRHSFATHLLEGGADLRSVQALLGHANVVTTEIYTHLADDHVRAA 315 >gi|237785449|ref|YP_002906154.1| integrase/recombinase [Corynebacterium kroppenstedtii DSM 44385] gi|237758361|gb|ACR17611.1| integrase/recombinase [Corynebacterium kroppenstedtii DSM 44385] Length = 326 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 36/284 (12%), Positives = 88/284 (30%), Gaps = 32/284 (11%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRK- 127 +++ Y + + N+ +++ ++ + D + + I + + Sbjct: 25 SHMVAAYIDHLAVEKNASPNTLSNYQRDLNKYVAWLDQHDLNIDSVDEPDIEQFIADLRR 84 Query: 128 ------HTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 +P SSA + ++R L +++ + +A + V + T E Sbjct: 85 GDSTLGWSPLAASSAARATVAVRSLHRFSHEEGQLARDVAAGVTVLRSGQSLPHALTVEQ 144 Query: 179 MQQFKSFWSEG-------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-G 230 + + + R E L +G+R S++ + + N ++ Sbjct: 145 VNRLIEACPVNESSNPIALRDRAVIELLYGTGMRISEALNLDIDSIDRNHAYVRVVGKGR 204 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDK---------QKMNATQFSIWFKAKATKAG 281 V + + + + + ++ + A A + G Sbjct: 205 KERLVPIGAPALHAIDAWLVRGRPSMVKRSDKALFLNARGNRLGRQSVWKFLHAAAERCG 264 Query: 282 VNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + S H +R AT GA + G +V + YT Sbjct: 265 LGDSVGPHTLRHSYATHLLQGGADIRAVQELLGHASVTTTQIYT 308 >gi|308069572|ref|YP_003871177.1| Tyrosine recombinase xerD [Paenibacillus polymyxa E681] gi|305858851|gb|ADM70639.1| Tyrosine recombinase xerD [Paenibacillus polymyxa E681] Length = 317 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 41/282 (14%), Positives = 100/282 (35%), Gaps = 32/282 (11%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGVESRKHTP--- 130 +Y + L+ ++ +++ Q G + H+ + K Sbjct: 13 QYMEEE--KGLSRSTLEAYQRDVQQFAEFAESCGIEQPDNVQRSHLVLYLGRLKEQGKAA 70 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---- 186 ++ + + S+R F + +R+ +P + +E PK + T++++++ Sbjct: 71 ATISRSVASIRSFFHFLIREGITIHDPSVLLELPKATKKKPSVLTQDEIERLLDAPDVTA 130 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-----------QKTGTIITV 235 +G + + E L +G+R S+ V+ ++ ++ + Sbjct: 131 PQGVRDKAMLELLYATGIRVSELIALNVRDVRTDLRFVHCGGEAGKERVVPISREASQWA 190 Query: 236 ELPDGFMKLL-------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 + +LL + +E F+N Q+++ F K +AG+ + + Sbjct: 191 QAYMDEQRLLLLKSGQGEEAQVEQEAMFLNVSGQRLSRQGFWKMIKKYGQEAGISEDITP 250 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 H +R A + GA + G + + Y + A R Sbjct: 251 HTLRHSFAVHMLEGGADLRSVQEMLGHADLSTTQVYAQTARR 292 >gi|282879077|ref|ZP_06287837.1| putative tyrosine recombinase XerD [Prevotella buccalis ATCC 35310] gi|281298811|gb|EFA91220.1| putative tyrosine recombinase XerD [Prevotella buccalis ATCC 35310] Length = 321 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 47/283 (16%), Positives = 102/283 (36%), Gaps = 23/283 (8%) Query: 65 RKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KH 118 T ++ Y + + + N+ I++++ ++ + + +H Sbjct: 2 ESNKKTTTDIVKSYTRYLKLERNYSPNTLIAYQNDLGWLLSFCEQQEISPLDVRLEDLQH 61 Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + P+S + L+ +R +++ V Y+ +P +E P+ + E+ Sbjct: 62 FAGQLHEHDIGPTSQARILSGVRSFYRFLVLDGYIEQDPTELLESPRLGEHLPEVLSTEE 121 Query: 179 MQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTII 233 + ++ EG + + E L GLR S+ + +L + I+ Sbjct: 122 VDMIENSIDLSKPEGQRNKAIIEVLFSCGLRVSELVNLQLSNLYLDEGFIRVTGKGNKER 181 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQ----------KMNATQFSIWFKAKATKAGVN 283 V + +K L + + + I +Q + T I K +A +AG+ Sbjct: 182 LVPISPKAIKELNLWFLDRNLMKIKPGEQDYVFLNRRGAHLTRTMILIMLKRQAQEAGIQ 241 Query: 284 KS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 K+ H +R AT GA + G +++ E YT Sbjct: 242 KTISPHTLRHSFATELLKGGADLRAIQVMLGHESIGTTEIYTH 284 >gi|292491052|ref|YP_003526491.1| tyrosine recombinase XerD [Nitrosococcus halophilus Nc4] gi|291579647|gb|ADE14104.1| tyrosine recombinase XerD [Nitrosococcus halophilus Nc4] Length = 306 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 57/300 (19%), Positives = 102/300 (34%), Gaps = 28/300 (9%) Query: 55 TPKREYINSPRKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFD 110 P L++ + + + LA N+ ++ + R G Sbjct: 1 MPGSPEKVRLAADQRQLEYFLDALWLEE----GLAENTLAAYRRDLEGFSRWLYPQGRTL 56 Query: 111 YRKITTKHI--RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168 + + R H SA + ++S+R +++ VR++ +P VE P+ Sbjct: 57 VEAQREDLLAYLAHRLERSHKARSAARSVSSLRRFYRYLVREKVRDSDPSDRVEAPRLGR 116 Query: 169 EGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 ++E+++ + + G + R E L +GLR S+ + L + Sbjct: 117 PLPESLSEEEVEALLAAPEVNCNLGLRDRAMLETLYATGLRVSELVHLTLPQLNLRQGVV 176 Query: 225 K-TQKTGTIITVELPDGFMKLLAMTP----------IGKETFFINNDKQKMNATQFSIWF 273 + + K V L + + L E F+ M F Sbjct: 177 RLSGKGNKERLVPLGEVALSWLECYSREARPGLIKAQMSEILFLTRRGGAMTRQAFWYLI 236 Query: 274 KAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 K A +AGV K S H +R AT + GA + G + + YT A R RL Sbjct: 237 KRYARQAGVRKALSPHTLRHAFATHLLNHGADLRVVQMLLGHADLSTTQIYTHVA-RARL 295 >gi|289596337|ref|YP_003483033.1| integrase family protein [Aciduliprofundum boonei T469] gi|289534124|gb|ADD08471.1| integrase family protein [Aciduliprofundum boonei T469] Length = 284 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 44/265 (16%), Positives = 91/265 (34%), Gaps = 19/265 (7%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134 + ++++ + N+ + + ++R IT + + Sbjct: 13 LEKFKEYLRGEKRSENTIKEYAHFISDMLRYF-HKRAEDITPGDLNKYKMYLSTKRKYSK 71 Query: 135 QFL----TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 L ++R FK+ ++ ++ PKR + + +++++++ SE Sbjct: 72 NSLYLATKAIRSYFKYKN------LDTAKNLSSPKRPRQMPKYLSEDEVKRLIEASSENP 125 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPDGFMKLLAMT 248 + L YSGLR S+ C ++ + N + K V + ++ L Sbjct: 126 RDYAIISLLAYSGLRVSELCNLKIEDVDFNERIVYVHSGKGDKDRIVVVSPRVIEALQNY 185 Query: 249 PIGKETFFIN----NDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302 +E K++ Q K A KAG+ K + H +R AT G Sbjct: 186 LYTREDDMEYLFASQKSNKISRVQVFRIVKKYAEKAGIKKEVTPHVLRHTLATTLLRRGV 245 Query: 303 TAHELMATYGWKTVDQAETYTKGAD 327 + G +V + YT D Sbjct: 246 DIRFIQQFLGHSSVATTQIYTHVDD 270 >gi|226949603|ref|YP_002804694.1| site-specific recombinase, phage integrase family [Clostridium botulinum A2 str. Kyoto] gi|226843121|gb|ACO85787.1| site-specific recombinase, phage integrase family [Clostridium botulinum A2 str. Kyoto] Length = 331 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 44/265 (16%), Positives = 89/265 (33%), Gaps = 13/265 (4%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSS 132 + Y S L++ + ++ I T +R + +R SS Sbjct: 59 LQIYLASKKLDGLSIETLKNYRYNLIIFADYL-RKPLAAIETMDLRMFLGARCKDMKQSS 117 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 ++ ++ F W +EY+ NP +++ K+ +P T+E+ + + + Sbjct: 118 VNGQISILKSFFGWLADEEYIPKNPAKKLKQTKQPKRVRKPLTEEEAELLRQACETD-RQ 176 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMTPIG 251 + EFL+ +G R + + + + S K V LL Sbjct: 177 KALTEFLISTGCRLDEVFKVNKDDINWHEMSLFIVGKGDKERKVYFNTKAKILLKKYLFS 236 Query: 252 KETFFI------NNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGAT 303 +E ++ FK A AG+ KS H R AT ++G Sbjct: 237 REDDNPALFVTSKRPYHRLGKRSIQREFKKIANIAGIEKSIHPHLFRHSFATYKINSGMP 296 Query: 304 AHELMATYGWKTVDQAETYTKGADR 328 + G ++ + Y + ++ Sbjct: 297 MPIIQHLMGHESPATTQIYAQLSEE 321 >gi|206978533|ref|ZP_03239383.1| tyrosine recombinase XerC [Bacillus cereus H3081.97] gi|217961251|ref|YP_002339819.1| site-specific tyrosine recombinase XerC [Bacillus cereus AH187] gi|229140473|ref|ZP_04269028.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-ST26] gi|206743256|gb|EDZ54713.1| tyrosine recombinase XerC [Bacillus cereus H3081.97] gi|217067516|gb|ACJ81766.1| tyrosine recombinase XerC [Bacillus cereus AH187] gi|228643034|gb|EEK99310.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-ST26] Length = 299 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 43/287 (14%), Positives = 95/287 (33%), Gaps = 27/287 (9%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126 +K L+ + + + + S+++ + ++ G + IT +R + + Sbjct: 3 VKKLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFMEREGISSFLDITYADVRLYLTTL 62 Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----M 179 S + ++S+R L+++ +R+ Y NP PK++ + E+ Sbjct: 63 HDEKLARKSVARKVSSLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELF 122 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238 + + G + + E + +G+R S+ + + + +I K + Sbjct: 123 EVSDTKTPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFG 182 Query: 239 DGFMKLLAMTPI------------GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284 L F+N + + KA + Sbjct: 183 SYAQDALITYIENGRKQLAKKTEEQSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRI 242 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 S H +R AT D GA + G + + + YT + RL Sbjct: 243 SPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTH-VSKERL 288 >gi|126665073|ref|ZP_01736056.1| site-specific tyrosine recombinase XerD [Marinobacter sp. ELB17] gi|126630443|gb|EBA01058.1| site-specific tyrosine recombinase XerD [Marinobacter sp. ELB17] Length = 314 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 41/268 (15%), Positives = 88/268 (32%), Gaps = 24/268 (8%) Query: 86 SLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLT 138 L+ +R ++ S + + G + + + + S+A + L+ Sbjct: 35 GLSEKTREAYRSDLGGLAQWLQGQPGTPLLIATQRSDLLTWLSGGLAGGVKASTAARRLS 94 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRL 194 +R +++ +R+ + +P L +E PK T+ ++ + + + Sbjct: 95 GIRRFYRYLLREGLIPEDPTLRIESPKLTRPLPDTLTEAEVNALLTEPDPEVPIELRDKA 154 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTP---- 249 E L GLR ++ + + ++ V L + + L Sbjct: 155 MLEILYGCGLRVTELTSLRLDQVNLRQGVVRITGKGDKDRLVPLGEEAIDWLQRYIKEAR 214 Query: 250 ------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAG 301 + F N + M F K A + G+ + S H +R AT + G Sbjct: 215 PELLKGHACDDLFPGNRPKAMTRQTFWHRIKHYAARTGIQKHLSPHTLRHAFATHLLNHG 274 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRI 329 A + G + + YT A + Sbjct: 275 ADLRVVQMLLGHADLSTTQIYTHVARQR 302 >gi|227549328|ref|ZP_03979377.1| site-specific tyrosine recombinase XerD [Corynebacterium lipophiloflavum DSM 44291] gi|227078647|gb|EEI16610.1| site-specific tyrosine recombinase XerD [Corynebacterium lipophiloflavum DSM 44291] Length = 301 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 48/287 (16%), Positives = 96/287 (33%), Gaps = 29/287 (10%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKH 128 + + + +A N+ ++ ++ I G ++T H+ + V + Sbjct: 5 QVATMWLDHLAVERGVAANTLSNYRRDVERYIAWLEAAGISRLDDVSTNHVEAYVADLRR 64 Query: 129 --------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + SSA + L R L K+AV + + +V P + + +++ Sbjct: 65 GVGRAKPLSASSAGRALVVARGLHKFAVAEGLTQADVASAVAPPSAGEKLPDTLSIDEVA 124 Query: 181 QFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITV 235 + + + + E L +G R S+ V + ++ T K V Sbjct: 125 RLLDACPTRTPCDLRDKALLEVLYATGARVSEVLGLVVDDVASDADVLTVTGKGSKQRLV 184 Query: 236 ELPDGFMKLLAMT---------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284 L + + F+N ++ K A +AG+ + Sbjct: 185 PLGSHAREAVDAYLVRGRPVLAKGSTYALFLNRRGTALSRQSAWGIIKDAAERAGLAKDI 244 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330 S H +R AT + GA + G +V + YT AD +R Sbjct: 245 SPHTLRHSFATHLLEGGADVRTVQELLGHASVTTTQIYTHITADNLR 291 >gi|323464636|gb|ADX76789.1| tyrosine recombinase XerC [Staphylococcus pseudintermedius ED99] Length = 296 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 33/275 (12%), Positives = 82/275 (29%), Gaps = 21/275 (7%) Query: 76 SEYRKSAHWGSL-AVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVESRKHT 129 ++ + ++ ++ Q R I ++ + Sbjct: 6 EQFLDMLKRERFFSDHTLKAYHDDLVQFNRFLAQEQLSLTAFKYIDARNYLQTLYDLGLQ 65 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSF 185 ++ + ++++R + + + Q+ +NP + + PK++ + E+M Q Sbjct: 66 RTTVSRKISTLRSFYAFWMTQDDEIVNPFVQLVHPKKERYLPTFFYTEEMEALFQTVMQD 125 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKL 244 +G + R+ E +G+R S+ + + + K G V + + Sbjct: 126 AHKGLRDRVILELFYATGIRVSELVSLKTEDVDLEMCWIKVLGKGGKERIVPFGEFCRQS 185 Query: 245 LAMTPIGKETFFINNDKQ--------KMNATQFSIWFKAKATK-AGVN-KSAHGVRKFSA 294 + + + AGV H +R A Sbjct: 186 IEQYLAEFAPIQNVQHPYLITNLKGQPITERGVRYVLNDIVKRTAGVTSIHPHKLRHTFA 245 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 T + GA + + G + YT ++ Sbjct: 246 THLLNEGADLRTVQSLLGHVNLSTTGRYTHVTNQQ 280 >gi|148273162|ref|YP_001222723.1| site-specific tyrosine recombinase XerD [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147831092|emb|CAN02037.1| integrase/recombinase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 328 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 44/305 (14%), Positives = 84/305 (27%), Gaps = 32/305 (10%) Query: 53 GSTPKREYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY 111 ++ + P L+ + + + L+ N+ ++ + D Sbjct: 5 AEGSGGAAPDAVPEVPVALRRAVDRWLRHVEVERGLSRNTLQAYRRDLARYTAHLADEGV 64 Query: 112 RKITTKHIR---------SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162 E T SS + L+S+R ++ V + V ++ Sbjct: 65 ADPADASAAHIAAFAQRVRDPEHGGLTASSLARMLSSVRSFHRFLVEEGIVEVDVSAEQR 124 Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHL- 217 PK + + + E M + + + E L +G R S+ V + Sbjct: 125 PPKLPSRLPKAVSIETMGRILDATDGDEPLRVRDKALLELLYATGARVSEITALTVDDVL 184 Query: 218 ---------------QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262 + +LA F+ Sbjct: 185 GADGAAAELVRVLGKGGKQRIVPVGSFARRAVDAYLVRVRPILAARGSATPALFLGLRGH 244 Query: 263 KMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320 ++ + KA A +AGV S H R AT GA + G +V + Sbjct: 245 ALSRQNAWLVIKAAAERAGVAEEISPHTFRHSFATHLIAGGADVRVVQELLGHSSVATTQ 304 Query: 321 TYTKG 325 YT+ Sbjct: 305 IYTRV 309 >gi|312134835|ref|YP_004002173.1| integrase family protein [Caldicellulosiruptor owensensis OL] gi|311774886|gb|ADQ04373.1| integrase family protein [Caldicellulosiruptor owensensis OL] Length = 376 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 53/378 (14%), Positives = 117/378 (30%), Gaps = 56/378 (14%) Query: 17 RHGKII---YYFRK----GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 + G Y + G + ++ L K+E++ K Sbjct: 7 KRGSTYSVVVYVGRDETTGKKKYKWYSGFKTKKEAEKALAELVNQIEKQEFV---EDKNV 63 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128 T+ I+E+ + H L ++ S++ ++ D + + I + K Sbjct: 64 TIGEFINEWFE-IHCKKLTPKTQESYQKMLRFYVLPYLNDIELATLKPLTIAKFYNTLKE 122 Query: 129 TP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 ++ +R ++ +AV+ +YV NP +VE PK+ + ++ W +++++ + Sbjct: 123 QGISNTTLNYVHRLLREIYNFAVKWQYVTKNPFDNVETPKKDRKEMQVWNLDEIRKAEEV 182 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-----------------KTQK 228 + LY+G+R + C + K + Sbjct: 183 -FRDTPIFAHVMLALYTGMRLGEVCGLKWDDIDFKNKVCAVRRVAEYINGEVVIKEKPKT 241 Query: 229 TGTIITVELPDGFMKLL----------------AMTPIGKETFFINNDKQKMNATQFSIW 272 ++ V L D +++L + D + S Sbjct: 242 DKSLRIVALTDNLVEILKEEKKRQLENKLKFGQNYDTTYDGFISVWEDGRFKVPDYVSKK 301 Query: 273 FKAKA-TKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKG-ADR 328 F + + K H +R AT+ AG + G + Y+ D Sbjct: 302 FSKILSKQNEIKKIRFHDLRHTHATLLLQAGVNMKVISDRLGHSQISITMDLYSHVNLDM 361 Query: 329 IRLGIKNSRRISSVVDSD 346 R + ++ + D Sbjct: 362 QR---EAIEKLEQRLAKD 376 >gi|30263835|ref|NP_846212.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str. Ames] gi|47529259|ref|YP_020608.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str. 'Ames Ancestor'] gi|49186681|ref|YP_029933.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str. Sterne] gi|165873312|ref|ZP_02217917.1| tyrosine recombinase XerC [Bacillus anthracis str. A0488] gi|167642028|ref|ZP_02400258.1| tyrosine recombinase XerC [Bacillus anthracis str. A0193] gi|170689658|ref|ZP_02880838.1| tyrosine recombinase XerC [Bacillus anthracis str. A0465] gi|170709363|ref|ZP_02899777.1| tyrosine recombinase XerC [Bacillus anthracis str. A0389] gi|177655993|ref|ZP_02937120.1| tyrosine recombinase XerC [Bacillus anthracis str. A0174] gi|229603261|ref|YP_002868069.1| tyrosine recombinase XerC [Bacillus anthracis str. A0248] gi|254683462|ref|ZP_05147322.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str. CNEVA-9066] gi|254735869|ref|ZP_05193575.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str. Western North America USA6153] gi|254739605|ref|ZP_05197299.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str. Kruger B] gi|254751200|ref|ZP_05203239.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str. Vollum] gi|254759317|ref|ZP_05211342.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str. Australia 94] gi|30258479|gb|AAP27698.1| tyrosine recombinase XerC [Bacillus anthracis str. Ames] gi|47504407|gb|AAT33083.1| tyrosine recombinase XerC [Bacillus anthracis str. 'Ames Ancestor'] gi|49180608|gb|AAT55984.1| site-specific recombinase, phage integrase family [Bacillus anthracis str. Sterne] gi|164710950|gb|EDR16522.1| tyrosine recombinase XerC [Bacillus anthracis str. A0488] gi|167510008|gb|EDR85424.1| tyrosine recombinase XerC [Bacillus anthracis str. A0193] gi|170125737|gb|EDS94650.1| tyrosine recombinase XerC [Bacillus anthracis str. A0389] gi|170666382|gb|EDT17165.1| tyrosine recombinase XerC [Bacillus anthracis str. A0465] gi|172079892|gb|EDT65000.1| tyrosine recombinase XerC [Bacillus anthracis str. A0174] gi|229267669|gb|ACQ49306.1| tyrosine recombinase XerC [Bacillus anthracis str. A0248] Length = 299 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 43/287 (14%), Positives = 95/287 (33%), Gaps = 27/287 (9%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126 +K L+ + + + + S+++ + ++ G + IT +R + + Sbjct: 3 VKKLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFMEREGISSFLDITYADVRLYLTTL 62 Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----M 179 S + ++S+R L+++ +R+ Y NP PK++ + E+ Sbjct: 63 HDEKLARKSVARKVSSLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELF 122 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238 + + G + + E + +G+R S+ + + + +I K + Sbjct: 123 EVSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFG 182 Query: 239 DGFMKLLAMTPI------------GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284 L F+N + + KA + Sbjct: 183 SYAQDALITYIENGRKQLAEKTEEQSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRI 242 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 S H +R AT D GA + G + + + YT + RL Sbjct: 243 SPHILRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTH-VSKERL 288 >gi|51245456|ref|YP_065340.1| integrase/recombinase [Desulfotalea psychrophila LSv54] gi|50876493|emb|CAG36333.1| related to integrase/recombinase [Desulfotalea psychrophila LSv54] Length = 357 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 44/341 (12%), Positives = 101/341 (29%), Gaps = 22/341 (6%) Query: 12 TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 K + G + + G R A+ ++ + + +L Sbjct: 5 KKRENKSGIVWEAHIRIKGHTPRRKSFPTKCRAQAWAVEYEALLRAKDAGDPRLAEQISL 64 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGV---ESRK 127 + + +Y + + ++ + R G D I + + Sbjct: 65 QEALDKYAEDSTAAGKKESTLDLESRATRHLTRLLGADRSLADIRPALVAQYQLTRQKEG 124 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFKS-- 184 ++ S+ L + ++ A + + NP + R R T + + Sbjct: 125 YSNSAIRTELAILSKMYNNARKIWGLNIKNPVNDITRVPPDKGNTRFLTTAEAKIVLDES 184 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--IITVELPDGFM 242 + L+++G+R S+ R + + S++ +T + +V L Sbjct: 185 KNIRNPKFYPFVLLLMHTGMRSSEVARLRPEDINFETLSLRIHETKSGIPRSVPLTTKAA 244 Query: 243 KLLAMTPIGKETFFINNDKQKMNAT-------QFSIWFKAKATKAG------VNKSAHGV 289 ++L ++ + FS +++ K + H + Sbjct: 245 EVLQTVSPEATGYYFLKENHLNQKDIRLAPAKAFSSCWRSLRKKMEASGHKIPHFRPHDL 304 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 R +A+ AG E+ G T+ YT D R Sbjct: 305 RHTAASHLLMAGVDIREVADILGHSTLAMTMRYTHLLDSRR 345 >gi|257094620|ref|YP_003168261.1| tyrosine recombinase XerD [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047144|gb|ACV36332.1| tyrosine recombinase XerD [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 304 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 54/304 (17%), Positives = 103/304 (33%), Gaps = 26/304 (8%) Query: 62 NSPRKKPTTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRK---ITTK 117 + P L I + + LA S S+ S Q+ + I Sbjct: 2 KAAEADPADLAE-IDAFCDTLWLEDGLAKASLSSYRSDLGQLAGWLAEQRLGSLCGIDEA 60 Query: 118 HIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 + V + T SS ++L+++R ++ V + +P L + P + + + + Sbjct: 61 TLLRFVATLAQTLRASSQARYLSTLRRFYRHQVAHGRRSSDPTLRIAMPVKPSRLPKVLS 120 Query: 176 KEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG- 230 + +++ G + R E L +GLR S+ + + ++ ++ G Sbjct: 121 ELQVERLLGAPPSETPLGQRDRAMLETLYATGLRVSELVGLKLHEVSLDMGVVRVFGKGA 180 Query: 231 TIITVELPDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKA 280 V L + L + F+ M F K A +A Sbjct: 181 KERLVPLGEEARDWLRRHLADGRLALLAGRQSDDVFVTARGAAMTRQAFWQLIKRYALQA 240 Query: 281 GVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 G++ S H +R AT + GA + G + + YT A R RL I +++ Sbjct: 241 GMDPARLSPHVLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVA-RERLKILHAQ 299 Query: 338 RISS 341 Sbjct: 300 HHPR 303 >gi|314938036|ref|ZP_07845346.1| tyrosine recombinase XerC [Enterococcus faecium TX0133a04] gi|314941978|ref|ZP_07848839.1| tyrosine recombinase XerC [Enterococcus faecium TX0133C] gi|314948769|ref|ZP_07852141.1| tyrosine recombinase XerC [Enterococcus faecium TX0082] gi|314951787|ref|ZP_07854826.1| tyrosine recombinase XerC [Enterococcus faecium TX0133A] gi|314991806|ref|ZP_07857264.1| tyrosine recombinase XerC [Enterococcus faecium TX0133B] gi|314995847|ref|ZP_07860934.1| tyrosine recombinase XerC [Enterococcus faecium TX0133a01] gi|313589951|gb|EFR68796.1| tyrosine recombinase XerC [Enterococcus faecium TX0133a01] gi|313593617|gb|EFR72462.1| tyrosine recombinase XerC [Enterococcus faecium TX0133B] gi|313596066|gb|EFR74911.1| tyrosine recombinase XerC [Enterococcus faecium TX0133A] gi|313599230|gb|EFR78075.1| tyrosine recombinase XerC [Enterococcus faecium TX0133C] gi|313642611|gb|EFS07191.1| tyrosine recombinase XerC [Enterococcus faecium TX0133a04] gi|313644835|gb|EFS09415.1| tyrosine recombinase XerC [Enterococcus faecium TX0082] Length = 314 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 42/293 (14%), Positives = 93/293 (31%), Gaps = 28/293 (9%) Query: 61 INSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYF---DQIIRKSGDFDYRKITT 116 + + T ++ + + ++ ++E + +SGD D K Sbjct: 6 LGQKEGEKMTEATWEQKFLRYLIVERGYSEKTKEAYEEDILHFKHFLEESGDADLLKAEY 65 Query: 117 KHIRSGVESRK-----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 +R + + ++ +S + + S+R +++ +++E + NP V K+ Sbjct: 66 FTVRVYLSALADHRPSYSRNSISRKIASLRSFYQYLLKEEVIKENPFSYVHLKKKNLRLP 125 Query: 172 RPWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KT 226 R + + +MQ + R E L SG+R S+ V + + + Sbjct: 126 RFFYENEMQALFDSVAGDSPLDLRNRALLEVLYGSGIRLSECSSLSVSDIDFDSEVMLIH 185 Query: 227 QKTGTIITVELPDGFMKLLA------------MTPIGKETFFINNDKQKMNATQFSIWFK 274 K L L + F+N+ + + T Sbjct: 186 GKGNKERYAPLGSFAQDALQEYFREGRQVLMTKYHEEHDIVFVNHHGKPITPTGIEYVLN 245 Query: 275 AKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 K+ ++ H +R AT + GA + G + + Y Sbjct: 246 QMIKKSSLDSDIHPHMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHV 298 >gi|310642630|ref|YP_003947388.1| phage integrase:phage integrase, n-terminal sam-like protein [Paenibacillus polymyxa SC2] gi|309247580|gb|ADO57147.1| Phage integrase:Phage integrase, N-terminal SAM-like protein [Paenibacillus polymyxa SC2] Length = 314 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 44/282 (15%), Positives = 102/282 (36%), Gaps = 32/282 (11%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGVESRKHTP--- 130 +Y + L+ ++ +++ Q G + H+ + K Sbjct: 10 QYMEEE--KGLSRSTLEAYQRDVQQFAEFAESCGLEQPDNVQRSHLVLYLGHLKEQGKAA 67 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---- 186 ++ + + S+R F + +R+ +P + VE PK + T++++++ + Sbjct: 68 ATISRSVASIRSFFHFLIREGIAIHDPSVLVELPKATKKKPSVLTQDEIERLLAAPDVSA 127 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-----QKTGTIITVELPDGF 241 +G + + E L +G+R S+ V ++ ++ + ++ I+ E Sbjct: 128 PQGGRDKAMLELLYATGIRVSELIALNVCDVRIDLRFVHCGGEAGKERVVPISREASQWA 187 Query: 242 MKLLAMT-------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 L +E F+N Q+++ F K A +AG+ + + Sbjct: 188 QAYLDEQRPALLRPGQGEEAQTKQEALFLNVSGQRLSRQGFWKIIKKYAQEAGISKDITP 247 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 H +R A + GA + G + + Y + A R Sbjct: 248 HTLRHSFAVHMLEGGADLRSVQEMLGHADLATTQVYAQTARR 289 >gi|116625461|ref|YP_827617.1| tyrosine recombinase XerD subunit [Candidatus Solibacter usitatus Ellin6076] gi|116228623|gb|ABJ87332.1| tyrosine recombinase XerD subunit [Candidatus Solibacter usitatus Ellin6076] Length = 302 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 51/267 (19%), Positives = 94/267 (35%), Gaps = 22/267 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMR 141 L+ NS ++ + + ++ +GD IR ++ T S + LT++R Sbjct: 27 KGLSPNSISAYSADLARFVQFTGDVQ-EPPGVPEIRQYIDHLYQTGLSNRSVGRHLTTLR 85 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFE 197 + + +R+ VA +P + P++ + E++++ G + R E Sbjct: 86 NFYGFLLREGKVATDPTEHLRTPRQWQTIPKYLNLEEIERIIQAPDLAKPLGLRDRAMME 145 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIK-----TQKTGTIITVELPDGFMKLLAMTPIG- 251 L SGLR S+ C+ G+ L ++ ++ + L G Sbjct: 146 VLYASGLRVSELCKLGIGDLDLEYQVLRTTGKGNKQRLVPVGKAAVLAVRAYLESGRPGL 205 Query: 252 -----KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATA 304 F+ M F A KAG+ + H +R AT + GA Sbjct: 206 LKGRASRYLFVTARGGCMTRQGFWKLLAAYGRKAGIFHGLTPHVLRHSFATHLLEGGADL 265 Query: 305 HELMATYGWKTVDQAETYTKGADRIRL 331 + G + + YT R RL Sbjct: 266 RSVQVMLGHADISTTQIYTHVM-RSRL 291 >gi|229019026|ref|ZP_04175867.1| Tyrosine recombinase xerC [Bacillus cereus AH1273] gi|229025272|ref|ZP_04181692.1| Tyrosine recombinase xerC [Bacillus cereus AH1272] gi|228736025|gb|EEL86600.1| Tyrosine recombinase xerC [Bacillus cereus AH1272] gi|228742266|gb|EEL92425.1| Tyrosine recombinase xerC [Bacillus cereus AH1273] Length = 302 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 42/287 (14%), Positives = 94/287 (32%), Gaps = 27/287 (9%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126 +K L+ + + + + S+++ + ++ G + +T +R + + Sbjct: 6 VKKLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYADVRLYLTTL 65 Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----M 179 S + ++S+R L+++ +R+ Y NP PK++ + E+ Sbjct: 66 HDEKLARKSVARKVSSLRSLYRFLMREGYQKDNPFALASLPKKELSIPKFLYAEELEELF 125 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238 + + G + + E + +G+R S+ + + + +I K + Sbjct: 126 EVSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFG 185 Query: 239 DGFMKLLAMTPI------------GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284 L F+N + KA + Sbjct: 186 SYAQDALITYIENGRKQLIQKTEEHSHMVFLNAKGTPLTDRGVRYVLNELIKKASLTMRI 245 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 S H +R AT D GA + G + + + YT + RL Sbjct: 246 SPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTH-VSKERL 291 >gi|296122593|ref|YP_003630371.1| tyrosine recombinase XerC [Planctomyces limnophilus DSM 3776] gi|296014933|gb|ADG68172.1| tyrosine recombinase XerC [Planctomyces limnophilus DSM 3776] Length = 302 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 40/283 (14%), Positives = 89/283 (31%), Gaps = 31/283 (10%) Query: 76 SEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----------GDFDYRKITTKHIRSGVE 124 + + + + + S+ F + G ++ + + Sbjct: 6 DRFLRYLQIERNASELTLKSYAEDFGSLHDYLTERVGHITEPGQLGISELR--GYVAYLN 63 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + ++ + L S+R F++ R++ V NP ++ P+ + + T E + + Sbjct: 64 ECGYAKTTIARRLASLRSFFRFCQREQLVEGNPAKALRTPRVGRKLPKFLTTEQIVKLLE 123 Query: 185 FWS----EGSQPRLAFEFLLYSGLRCSDSCRAG-VQHLQNNIFSIKTQKTGTIITVELPD 239 +G + R E +GLR ++ Q+ K L Sbjct: 124 APPANEVDGLRDRAILETFYSAGLRVAELVGLNLDDWDQDAQILHVFGKGKKERIAPLGK 183 Query: 240 GFMKLLAMTPIGKETF-----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286 K L ++ F+N ++ + G+++ S Sbjct: 184 HATKALEKWVAVRKPEEAAPPQLKNALFLNRFGTRLTTRSVGRMLEKYIQLTGLDQLISP 243 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 H +R AT D GA + G K++ + YT + + Sbjct: 244 HTLRHTFATHLLDGGADLRSVQEMLGHKSLTTTQIYTHVSTQR 286 >gi|322806579|emb|CBZ04148.1| integrase/recombinase (XerC/CodV family) [Clostridium botulinum H04402 065] Length = 330 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 42/265 (15%), Positives = 85/265 (32%), Gaps = 13/265 (4%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG--VESRKHTPSS 132 + Y + L+ + ++E I T +R V + +S Sbjct: 58 LQIYLATKKLDGLSRKTLKNYECNLLIFADHL-RKPLSTINTMDLRMFLTVRCKSMKATS 116 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 ++ ++ F W +EY+ NP +++ K +P T+E+++ + + Sbjct: 117 VNGQISILKSFFGWLHEEEYIPKNPAKKLKQTKEPKRVRKPLTEEEIELLRQSCKTD-RE 175 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMTPIG 251 EFL+ +G R S+ + + S K V LL + Sbjct: 176 EALIEFLISTGCRLSEIVEVNKDDINWHEMSLFVVGKGDKERKVYFSTKAKILLKKYLLT 235 Query: 252 KETFFINNDKQKMNA------TQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGAT 303 + + K A AG+ KS H R AT ++G Sbjct: 236 RADNNEALFVTSRSPHNRLGGRSIQREIKKIANMAGIEKSIHPHLFRHSFATYKINSGMP 295 Query: 304 AHELMATYGWKTVDQAETYTKGADR 328 + G ++ + Y + ++ Sbjct: 296 MPIIQHLMGHESPATTQIYAQLSEE 320 >gi|312891380|ref|ZP_07750897.1| tyrosine recombinase XerD [Mucilaginibacter paludis DSM 18603] gi|311296074|gb|EFQ73226.1| tyrosine recombinase XerD [Mucilaginibacter paludis DSM 18603] Length = 299 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 51/273 (18%), Positives = 94/273 (34%), Gaps = 28/273 (10%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI--------RSGVESRKHTPSSAIQF 136 SL+ NS ++ D++I+ D K+ I V PSS + Sbjct: 18 KSLSANSVGAYLGDLDKLIQ-FADSKLIKLYPDTIGMNDLREFIMWVNELGMIPSSQARI 76 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQP 192 ++ ++ +K+ + ++ +P +E PK + + D+ + EG + Sbjct: 77 ISGIKAFYKYLLMDNQLSYDPSELLEAPKLMRKLPDTLSIVDIDKLIDAIDLSKPEGMRN 136 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251 + E L GLR ++ + +L + F K V + +K L + Sbjct: 137 KTMIEVLYGCGLRVTELVNLRISNLYLDIEFIKVLGKGNKERLVPIGAQAIKFLKIWLQE 196 Query: 252 KETFFINNDK-----------QKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISA 298 +++ + K A K G+ KS H R AT Sbjct: 197 VRVHTPVKMGEEDIVFLNRRGNRLSRVYVFMMIKELAEKIGLKKSISPHTFRHSFATHLI 256 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 + GA + G +++ E YT DR L Sbjct: 257 EGGADLRAVQEMLGHESITTTEIYTH-LDREYL 288 >gi|225850417|ref|YP_002730651.1| phage integrase family protein [Persephonella marina EX-H1] gi|225645629|gb|ACO03815.1| phage integrase family protein [Persephonella marina EX-H1] Length = 292 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 42/298 (14%), Positives = 95/298 (31%), Gaps = 33/298 (11%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRK 127 + + Y + + ++ + Q ++ GD D +IT I R +++ + Sbjct: 3 ISECVELYLSYI--SDRSAYTVRNYRTDLKQFVQSVGDKDITEITKADIAKFRMFLQANR 60 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S+ + L S+ F++ + E ++ +P RPK + + E++Q+ Sbjct: 61 RKSSTIARKLASVNSFFEYLIDLELISSSPVSKSHRPKVSQKIPSSLSNEEIQKVLKSC- 119 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----------------- 230 E + +L +G+R S+ + Sbjct: 120 ENLLEKTVIVLMLTTGIRSSELLSIRRSDILIEKDGRTFAPDTILENYTDGSEVAYIKIK 179 Query: 231 ----TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA 286 V + + +L + + +++G+ Sbjct: 180 GKGGKERVVPVSGKPLNILLQYLDKNRDERLF----PFSYHTLRRLISNIGSRSGIPLHP 235 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 H +R +ATI+ +GA + G + Y K +K +R +S +D Sbjct: 236 HKLRHTAATIALKSGAELRVIQELLGHASPLTTARYAKVGHEQ--LVKATRTLSESID 291 >gi|282916512|ref|ZP_06324270.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus D139] gi|283770316|ref|ZP_06343208.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus H19] gi|282318999|gb|EFB49351.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus D139] gi|283460463|gb|EFC07553.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus H19] Length = 298 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 36/276 (13%), Positives = 88/276 (31%), Gaps = 23/276 (8%) Query: 76 SEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH------ 128 + + + + ++ S++ Q + ++ T R + Sbjct: 6 EAFLNTLKVERNFSEHTLKSYKDDLIQFNQFLEQEHL-QLNTFEYRDARNYLSYLYSNHL 64 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +S + ++++R +++ + + INP + + PK++ + + +E+M+ E Sbjct: 65 KRTSVSRKISTLRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEALFKTVEE 124 Query: 189 GS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMK 243 + + R+ E L +G+R S+ Q + K V + Sbjct: 125 DTSKSLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVLGKGSKERFVPFGAYCRQ 184 Query: 244 LLAMTPIGKETFFINNDKQ--------KMNATQFSIWFKAKATK-AGV-NKSAHGVRKFS 293 + + N + + AGV H +R Sbjct: 185 SIENYLEHFKPIQSCNHDFLIVNMKGEAITERGVRYVLNDIVKRTAGVSEIHPHKLRHTF 244 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + GA + + G + YT +++ Sbjct: 245 ATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQ 280 >gi|237795760|ref|YP_002863312.1| phage integrase [Clostridium botulinum Ba4 str. 657] gi|229261691|gb|ACQ52724.1| phage integrase [Clostridium botulinum Ba4 str. 657] Length = 330 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 46/301 (15%), Positives = 94/301 (31%), Gaps = 15/301 (4%) Query: 41 STFIPAYMSALTGSTPKREYINSPRKKPTT--LKWLISEYRKSAHWGSLAVNSRISFESY 98 + + + + T ++ + Y S L++ + +++ Sbjct: 22 PEIDQRKVRTIAEEVLYKYRVLPEETGLVTSDIEEKLQIYLASKKLDGLSLKTLKNYQYN 81 Query: 99 FDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAIN 156 ITT +R + R +S ++ ++ F W +EY+ N Sbjct: 82 LAIFADHL-RKPLGTITTMDLRMFLAVRCKNMKATSVNGQISILKSFFGWLHDEEYIPKN 140 Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216 P +++ K T+E+++ + + + EFL+ +G R S+ Sbjct: 141 PAKKLKQTKEPKRLRHAMTEEEVELLRQASKTD-REKALVEFLISTGCRLSEVVGVNKDD 199 Query: 217 LQNNIFS-IKTQKTGTIITVELPDGFMKLLAMT------PIGKETFFINNDKQKMNATQF 269 L + S K V LL ++ Sbjct: 200 LNWHEMSLNVIGKGNKERKVYFSTKAKILLKKYLLTRKDDNEALFVTSKRPHGRLGGRSV 259 Query: 270 SIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 K A +AG+NKS H R AT ++G L G ++ + Y + ++ Sbjct: 260 QREIKKIANRAGLNKSVYPHLFRHSFATCKINSGMPLPVLQHIMGHESPSTTQVYAQLSE 319 Query: 328 R 328 Sbjct: 320 E 320 >gi|118594103|ref|ZP_01551450.1| Tyrosine recombinase XerC [Methylophilales bacterium HTCC2181] gi|118439881|gb|EAV46508.1| Tyrosine recombinase XerC [Methylophilales bacterium HTCC2181] Length = 300 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 40/273 (14%), Positives = 83/273 (30%), Gaps = 20/273 (7%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS---GVESRK 127 K I +Y + L+ + S+ + + D + IR ++ Sbjct: 4 KDYIEKYTDYIKFEKRLSALTIKSYLRDIRLLDSELQGKDLQSYQVDDIRRGISVFHAKG 63 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ---FKS 184 S + L+S R F + + ++NP + ++ PK K + + + + Sbjct: 64 INGKSLSRMLSSWRGFFDFLNHRYEFSLNPVMGIKAPKAKKLLPQTLSIDHAIKLVSITD 123 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMK 243 G + R E SGLR S+ + + + + K V + ++ Sbjct: 124 KSFLGLRDRAIMELFYSSGLRLSELAAMKLADINMDEQTASILGKGNKSRIVPIGSHALQ 183 Query: 244 LLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAGVN--KSAHGVRK 291 L + ++ N + K A K G+ H +R Sbjct: 184 ALNDWIVMRKKISDFNPRTTHLFLSEKGNALGVRSIQYRLKFWAIKQGIPENIHPHLLRH 243 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324 A+ + + G + + YT Sbjct: 244 SFASHLLQSSQDLRAVQELLGHANISTTQIYTH 276 >gi|297537394|ref|YP_003673163.1| tyrosine recombinase XerC [Methylotenera sp. 301] gi|297256741|gb|ADI28586.1| tyrosine recombinase XerC [Methylotenera sp. 301] Length = 294 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 37/278 (13%), Positives = 88/278 (31%), Gaps = 21/278 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TP 130 + +Y + + L+ + ++ + + + +T IR + + + Sbjct: 4 LDDYLQHLTFERGLSALTLKNYARDIQLLESLADNTALDTVTNTQIRRYIATLHGRGLSG 63 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 + + L++ R + + + NP + + PK + + + +F +G Sbjct: 64 KTIARALSAWRGFYNYLTHHKGYTQNPVMGLRAPKSAKTLPQALSTDQAVKFVDIKGDGP 123 Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQN-----------NIFSIKTQKTGTIITVE 236 + E SGLR ++ + L N I + + ++ Sbjct: 124 LERRDHAILELFYSSGLRLAELVNLDIGMLDFSEGTVTVTGKGNKTRIVPMGSHAVSAIQ 183 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSA 294 L+ + I F+ +++ K + K G+N S H +R A Sbjct: 184 TWLQSRALIKIADINPNALFVTQQGKRITPRAVQYRVKEWSIKQGLNISMHPHLLRHSFA 243 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 + + + G + + YT D L Sbjct: 244 SHVLQSSQDLRAVQEMLGHANISTTQIYTH-LDFQHLA 280 >gi|206889998|ref|YP_002248163.1| site specific recombinase [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741936|gb|ACI20993.1| site specific recombinase [Thermodesulfovibrio yellowstonii DSM 11347] Length = 345 Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 44/320 (13%), Positives = 90/320 (28%), Gaps = 20/320 (6%) Query: 17 RHGKIIYYFRKGHGR--RIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 + G I ++ G+ R Y AL + + + + Sbjct: 5 KRGNIWWFSVTIKGKQFRFSTKTTDRKKATEIYAKALLELDNPTKDVEN----QISFGEF 60 Query: 75 IS-EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPS 131 +Y + S S + YF I +ITT+ I TP+ Sbjct: 61 FENQYLPFSE----RQASHQSKKYYFKVIPEWFKKIPINQITTRDIELLQGDLLKGRTPA 116 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED-MQQFKSFWSEGS 190 S + + +++ + A E V+R K ++ + K Sbjct: 117 SVNRIIATIKHSLRKAYEWELTEEETLKRVQRVKPLKGEVQRLRFLSLEECHKLIEVAEP 176 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMT 248 + L +G+R + + + ++ K G + + D L Sbjct: 177 HLKPIIITALNTGMRKGEILSLTWSQIDLKHGFIHLEKTKNGERRDIPMNDTLKILFRDL 236 Query: 249 PIGKETFFINNDKQKMNATQFSIW---FKAKATKAGV-NKSAHGVRKFSATISADAGATA 304 + + + F+ +AG+ + H +R A+ G Sbjct: 237 IKNRRLDSDYVFLNPETGKRLTDIKRSFRTACKRAGITDFRFHDLRHTFASHLIMNGVDL 296 Query: 305 HELMATYGWKTVDQAETYTK 324 + G KT+ Y+ Sbjct: 297 KTVQELLGHKTIKMTLKYSH 316 >gi|307565005|ref|ZP_07627522.1| putative tyrosine recombinase XerD [Prevotella amnii CRIS 21A-A] gi|307346318|gb|EFN91638.1| putative tyrosine recombinase XerD [Prevotella amnii CRIS 21A-A] Length = 310 Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 42/272 (15%), Positives = 90/272 (33%), Gaps = 24/272 (8%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVESRKHT 129 Y K + ++ ++ +++ + + + + Sbjct: 15 FRRYLKLE--KGYSEHTIDAYMRDIEKLSSFLEAEKIDVLDVRLEDLERFTACMSELGIG 72 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----F 185 S + L+ +R +++ + Y+ I+P +E PK+ + ++ + Sbjct: 73 ARSLSRVLSGIRHFYRFLILDGYLEIDPTELLESPKQPKHLPEVLSTAEVDIILNSIDLT 132 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKL 244 EG + + E L GLR S+ + +L ++ V + ++ Sbjct: 133 KWEGQRNKAIIEVLFSCGLRVSELTSLKISNLYFQEQYVRIMGKGSKERLVPISPRAIEE 192 Query: 245 LAMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKF 292 L + + I N + T I K A AG+ K+ H +R Sbjct: 193 LNYWFLDRSQMKIKEGEDDYVFLNRRGSHLTRTMILIMLKRYAYAAGIKKTISPHTLRHS 252 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324 AT + GA + A G +++ E YT Sbjct: 253 FATALLEGGADLRSIQAMLGHESIVTTELYTH 284 >gi|294669707|ref|ZP_06734774.1| hypothetical protein NEIELOOT_01608 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291308620|gb|EFE49863.1| hypothetical protein NEIELOOT_01608 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 290 Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 36/277 (12%), Positives = 92/277 (33%), Gaps = 19/277 (6%) Query: 72 KWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKH 128 L + L+ N+ ++ ++I + D+ + + V Sbjct: 2 SDLTDRFLDHLWLQERLSANTLAAYRRDLNKIAVRLAGQGEDWLSADGSGLAAVVYHPDE 61 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-- 186 S + L++ + + W + E ++ +P + PK++ ++ ++ + Sbjct: 62 KTRSQARALSACKRFYGWLLETEQLSNDPTEYLTAPKQERILPAIVSESQIEMLLAAPDT 121 Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-----------FSIKTQKTGTII 233 G + + E + SGLR S++ + + + + Sbjct: 122 DSPHGLRDKALLELMYASGLRVSEAVKLTLGEIDLQRGLVVTVGKGGKQRLVPMGEEASY 181 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKF 292 +E + + + + F+ + ++ + A AG+ + S H +R Sbjct: 182 WIERYLAQARPVLLKNARCDELFVGQKRNGISRQLAWMIVDKYAEAAGIRHLSPHSLRHA 241 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + GA + + G + + YT A+ Sbjct: 242 FATHLVNHGADLRVVQSLLGHADISTTQIYTHVANER 278 >gi|254166742|ref|ZP_04873596.1| site-specific recombinase, phage integrase family protein [Aciduliprofundum boonei T469] gi|197624352|gb|EDY36913.1| site-specific recombinase, phage integrase family protein [Aciduliprofundum boonei T469] Length = 279 Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 44/265 (16%), Positives = 91/265 (34%), Gaps = 19/265 (7%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134 + ++++ + N+ + + ++R IT + + Sbjct: 8 LEKFKEYLRGEKRSENTIKEYAHFISDMLRYF-HKRAEDITPGDLNKYKMYLSTKRKYSK 66 Query: 135 QFL----TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 L ++R FK+ ++ ++ PKR + + +++++++ SE Sbjct: 67 NSLYLATKAIRSYFKYKN------LDTAKNLSSPKRPRQMPKYLSEDEVKRLIEASSENP 120 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPDGFMKLLAMT 248 + L YSGLR S+ C ++ + N + K V + ++ L Sbjct: 121 RDYAIISLLAYSGLRVSELCNLKIEDVDFNERIVYVHSGKGDKDRIVVVSPRVIEALQNY 180 Query: 249 PIGKETFFIN----NDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302 +E K++ Q K A KAG+ K + H +R AT G Sbjct: 181 LYTREDDMEYLFASQKSNKISRVQVFRIVKKYAEKAGIKKEVTPHVLRHTLATTLLRRGV 240 Query: 303 TAHELMATYGWKTVDQAETYTKGAD 327 + G +V + YT D Sbjct: 241 DIRFIQQFLGHSSVATTQIYTHVDD 265 >gi|118592100|ref|ZP_01549494.1| probable site-specific integrase/recombinase [Stappia aggregata IAM 12614] gi|118435396|gb|EAV42043.1| probable site-specific integrase/recombinase [Stappia aggregata IAM 12614] Length = 307 Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 94/301 (31%), Gaps = 33/301 (10%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP--- 130 + + + A N+ + + G ++ I + + Sbjct: 7 LENFLEMLAAERGAAENTLAGYRRDLEDFSGFLGRKSLASAQSEDISAYLGDLNRRGFAE 66 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 +S + L++++ +K+ + +P ++ PK++ + + ED+ + + Sbjct: 67 TSQARRLSALKQFYKFLYAEGTREDDPTRTLSAPKKRASLPKVLSIEDVDRLIETARAET 126 Query: 191 --------------QPRLAFEFLLYSGLRCSDSCR-AGVQHLQNNIFSIKTQKTGTIITV 235 + E L +GLR S+ L++ K G V Sbjct: 127 ERPRKSATARLRAQRMYTLIEVLYATGLRVSELVALPVTAALRDARLIEIKGKGGKERLV 186 Query: 236 ELPDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-- 283 L + F + D + F+ K A AG++ Sbjct: 187 PLSRAAQAAMKDYVGLRAAEGAYEKSPWLFPSHGDSGHLTRQHFARELKDLAVAAGLDAG 246 Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSRRISS 341 S H +R A+ GA + G + + YT D R+R ++++ ++ Sbjct: 247 KISPHVLRHAFASHLLQNGADLRVVQQLLGHADISTTQIYTHVLDERLRELVESAHPLAK 306 Query: 342 V 342 Sbjct: 307 K 307 >gi|163839570|ref|YP_001623975.1| XerD/RipX family integrase/recombinase [Renibacterium salmoninarum ATCC 33209] gi|162953046|gb|ABY22561.1| integrase/recombinase (XerD/RipX family) [Renibacterium salmoninarum ATCC 33209] Length = 312 Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 45/289 (15%), Positives = 90/289 (31%), Gaps = 39/289 (13%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHT 129 + EY + LA N+ ++ + G +I+ K++ ++ Sbjct: 4 ALREYLQHLAVERGLAANTLAAYRRDLTRYTNFLASQGVRTPEQISRKNVTDFAQALSTG 63 Query: 130 --------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 SA + + ++R + K+ + +P V P + + ++ + Sbjct: 64 SDGATALGVRSAARCIVALRGMHKFWALEATTTADPASEVHPPMAGRRLPKAISVAEVTK 123 Query: 182 FKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ------------------- 218 + + R EFL +G R S++ V + Sbjct: 124 ILEASGSDTATGLRDRALLEFLYSTGARISEAIGLDVDDVVGANSVGNDQSGPAVVRLFG 183 Query: 219 --NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK 276 + + G LL+ T F+N +++ K Sbjct: 184 KGSKERIVPLGSYGARAIEAYLVRGRPLLSATGKATPALFLNVRGGRLSRQSAWAILKTA 243 Query: 277 ATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 A KA ++K S H +R AT + GA + G +V + YT Sbjct: 244 AEKAEISKVVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYT 292 >gi|229545742|ref|ZP_04434467.1| site-specific recombinase XerD [Enterococcus faecalis TX1322] gi|229309192|gb|EEN75179.1| site-specific recombinase XerD [Enterococcus faecalis TX1322] Length = 299 Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 37/280 (13%), Positives = 90/280 (32%), Gaps = 27/280 (9%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESR- 126 L + Y + ++ +++ ++ SG+ +Y + +R+ + Sbjct: 6 WPELFARYL--IVERGYSEKTKKAYQEDIQHFFLFLKTSGNDNYLTVEHLDVRAYLSELY 63 Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 +++ +S + + S+R +++ ++ E + NP V K++ R + +++M Sbjct: 64 DQEYSRNSISRKIASLRSFYQFLLKNEAIQENPFSYVHMKKKQLRLPRFFYEKEMDALFE 123 Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD 239 + + E L +G+R S+ V + + K V Sbjct: 124 SAQGEQPLDLRNQALLEVLYGTGIRVSECANLTVDAVDFQASVLLVHGKGNKDRYVPFGS 183 Query: 240 GFMKLLAMT------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285 L F+N+ +++ T K+ + Sbjct: 184 FAQDALKDYLENGRALLMTKYQKKHPYVFVNHHGEQITPTGIEYVLNQLIKKSSLNAEIH 243 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 H +R AT + GA + G + + Y Sbjct: 244 PHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHV 283 >gi|229047517|ref|ZP_04193107.1| Tyrosine recombinase xerC [Bacillus cereus AH676] gi|228723764|gb|EEL75119.1| Tyrosine recombinase xerC [Bacillus cereus AH676] Length = 299 Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 42/287 (14%), Positives = 94/287 (32%), Gaps = 27/287 (9%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126 +K L+ + + + + S+++ + ++ G + +T +R + + Sbjct: 3 VKKLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYADVRLYLTTL 62 Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----M 179 S + ++S+R L+++ +R+ Y NP PK++ + E+ Sbjct: 63 HDEKLARKSVARKVSSLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELF 122 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238 + G + + E + +G+R S+ + + + +I K + Sbjct: 123 EVSDMETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFG 182 Query: 239 DGFMKLLAMTPIG------------KETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284 L F+N + + KA + Sbjct: 183 SYAQDSLITYIENGRKQLVNKTDEDSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRI 242 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 S H +R AT D GA + G + + + YT + RL Sbjct: 243 SPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTH-VSKERL 288 >gi|68535950|ref|YP_250655.1| integrase/recombinase [Corynebacterium jeikeium K411] gi|68263549|emb|CAI37037.1| integrase/recombinase [Corynebacterium jeikeium K411] Length = 299 Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 46/278 (16%), Positives = 95/278 (34%), Gaps = 23/278 (8%) Query: 72 KWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESR 126 + L++ Y + ++V++ +++ D+ + G +++T I + Sbjct: 7 RKLVTAYIRHLKTERDVSVHTLSNYQRDLDRYLVWLGSKALQEVTATDIEDHLVYLRKDL 66 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 SSA + L ++R L +A + + + V P + + + ++ + Sbjct: 67 NLAASSAARGLAAIRGLHSFAHADGRLPFDVAVDVPTPSQGGSIPKALSLAQVEALLNAV 126 Query: 187 SEGS-------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238 G + R E L +G R ++ V L + K G V L Sbjct: 127 PAGDGASQINIRDRALLEMLYSTGARITELLDLDVDDLDREQRVLLVRGKGGKERIVPLG 186 Query: 239 DGFMKLLAMTPIGKETF---------FINNDKQKMNATQFSIWFKAKATKAGVNK-SAHG 288 ++ + + F+NN ++ A AG+ S H Sbjct: 187 RPALQAVERYLVRARPSLNKKGSPALFLNNRGARLGRQSGFKIVSQAAEAAGLEHVSPHS 246 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 +R AT + GA + G +V + YTK + Sbjct: 247 LRHSFATHLLEGGADIRVVQELLGHASVATTQIYTKVS 284 >gi|49483415|ref|YP_040639.1| integrase/recombinase [Staphylococcus aureus subsp. aureus MRSA252] gi|257425306|ref|ZP_05601731.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus 55/2053] gi|257427967|ref|ZP_05604365.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus 65-1322] gi|257430600|ref|ZP_05606982.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus 68-397] gi|257433360|ref|ZP_05609718.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus E1410] gi|257436202|ref|ZP_05612249.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus M876] gi|282903807|ref|ZP_06311695.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus C160] gi|282905570|ref|ZP_06313425.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus Btn1260] gi|282908545|ref|ZP_06316375.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910824|ref|ZP_06318627.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus WBG10049] gi|282914029|ref|ZP_06321816.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus M899] gi|282918951|ref|ZP_06326686.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus C427] gi|282924074|ref|ZP_06331750.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus C101] gi|283957995|ref|ZP_06375446.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus A017934/97] gi|293501061|ref|ZP_06666912.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus 58-424] gi|293510023|ref|ZP_06668731.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus M809] gi|293526609|ref|ZP_06671294.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus M1015] gi|295427739|ref|ZP_06820371.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus EMRSA16] gi|297591303|ref|ZP_06949941.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus MN8] gi|81651263|sp|Q6GHI3|XERC_STAAR RecName: Full=Tyrosine recombinase xerC gi|49241544|emb|CAG40230.1| putative integrase/recombinase [Staphylococcus aureus subsp. aureus MRSA252] gi|257271763|gb|EEV03901.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus 55/2053] gi|257274808|gb|EEV06295.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus 65-1322] gi|257278728|gb|EEV09347.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus 68-397] gi|257281453|gb|EEV11590.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus E1410] gi|257284484|gb|EEV14604.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus M876] gi|282314046|gb|EFB44438.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus C101] gi|282316761|gb|EFB47135.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus C427] gi|282322097|gb|EFB52421.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus M899] gi|282325429|gb|EFB55738.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus WBG10049] gi|282327607|gb|EFB57890.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330862|gb|EFB60376.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus Btn1260] gi|282595425|gb|EFC00389.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus C160] gi|283790144|gb|EFC28961.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus A017934/97] gi|290920681|gb|EFD97744.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus M1015] gi|291096066|gb|EFE26327.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus 58-424] gi|291466967|gb|EFF09485.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus M809] gi|295128097|gb|EFG57731.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus EMRSA16] gi|297576189|gb|EFH94905.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus MN8] gi|312438369|gb|ADQ77440.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus TCH60] gi|315194139|gb|EFU24532.1| putative integrase/recombinase [Staphylococcus aureus subsp. aureus CGS00] gi|323441030|gb|EGA98737.1| integrase/recombinase [Staphylococcus aureus O11] gi|323443899|gb|EGB01510.1| integrase/recombinase [Staphylococcus aureus O46] Length = 298 Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 36/276 (13%), Positives = 88/276 (31%), Gaps = 23/276 (8%) Query: 76 SEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH------ 128 + + + + ++ S++ Q + ++ T R + Sbjct: 6 EAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLEQEHL-QLNTFEYRDARNYLSYLYSNHL 64 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +S + ++++R +++ + + INP + + PK++ + + +E+M+ E Sbjct: 65 KRTSVSRKISTLRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEALFKTVEE 124 Query: 189 GS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMK 243 + + R+ E L +G+R S+ Q + K V + Sbjct: 125 DTSKSLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVLGKGSKERFVPFGAYCRQ 184 Query: 244 LLAMTPIGKETFFINNDKQ--------KMNATQFSIWFKAKATK-AGV-NKSAHGVRKFS 293 + + N + + AGV H +R Sbjct: 185 SIENYLEHFKPIQSCNHDFLIVNMKGEAITERGVRYVLNDIVKRTAGVSEIHPHKLRHTF 244 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + GA + + G + YT +++ Sbjct: 245 ATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQ 280 >gi|309805721|ref|ZP_07699761.1| putative tyrosine recombinase XerC [Lactobacillus iners LactinV 09V1-c] gi|308164974|gb|EFO67217.1| putative tyrosine recombinase XerC [Lactobacillus iners LactinV 09V1-c] Length = 300 Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 38/276 (13%), Positives = 95/276 (34%), Gaps = 27/276 (9%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIR---SGVESRKHTP 130 Y K+ + ++N+ ++ + G D+ K++++ I + +K Sbjct: 7 YLKNE--RNYSINTCKAYMDDLSEARTFFVENGGFIDWIKLSSRDIEIFIQYLAQKKDKR 64 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FW 186 S+ + ++++R +++ ++ + +NP + + ++M + Sbjct: 65 STQSRKISTLRSFYRFLNKRNIIPVNPVELISLRGEHKKLPEFLYNDEMVKVLKSISTTT 124 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKLL 245 G + E +G+R S+ ++ + + I K V + L Sbjct: 125 PLGLRNMALLELFYATGMRVSEIANLKLEQIDFELNLILVHGKGNKDRYVAFGEEAKTAL 184 Query: 246 AM-----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKF 292 F+N++ ++ + K AGV+ S H +R Sbjct: 185 NNYLVEARKKLLLHKTDYGYVFLNSNGNRITSRGLEYIIKNIFLNAGVSASVHPHMLRHT 244 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 AT + GA + G +++ + YT + Sbjct: 245 FATQMLNNGADLRTVQELLGHESISTTQIYTHVTKQ 280 >gi|91789051|ref|YP_550003.1| tyrosine recombinase XerD subunit [Polaromonas sp. JS666] gi|91698276|gb|ABE45105.1| tyrosine recombinase XerD subunit [Polaromonas sp. JS666] Length = 300 Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 46/274 (16%), Positives = 89/274 (32%), Gaps = 24/274 (8%) Query: 86 SLAVNSRISFESYFDQIIRKSG-----DFDYRKITTKHIRSGVESRK--HTPSSAIQFLT 138 L+ N+ ++ + +R +SA + LT Sbjct: 21 GLSKNTLAAYRRDLSLFAAWLAAPAQQGRRLDDTVETDLNRYFSTRHATTKATSANRRLT 80 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194 + F+WA+R+ + ++P L ++ K+ + ++ ++ + SE G + R Sbjct: 81 VFKRYFRWALRERLITVDPTLKLQSAKQALRVPKVMSEAQVEALLAAPSESTPLGQRDRA 140 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT----- 248 E + SGLR S+ H+ N ++ V + + + Sbjct: 141 MLELMYASGLRVSELVGLKTFHVGLNEGVLRVMGKGSKERLVPFGQVAREWVVLYLAEAR 200 Query: 249 -----PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAG 301 + F+ N M+ F + K A AG+ S H +R AT + G Sbjct: 201 PAILGGQQTDDLFVTNRGSGMSRVMFWMLVKKYAQLAGIHSPLSPHTLRHAFATHLLNHG 260 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 A + G + YT A + Sbjct: 261 ADLRAVQMLLGHADISTTTIYTHVARERLKALHA 294 >gi|300870084|ref|YP_003784955.1| tyrosine recombinase XerD [Brachyspira pilosicoli 95/1000] gi|300687783|gb|ADK30454.1| tyrosine recombinase, XerD [Brachyspira pilosicoli 95/1000] Length = 288 Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 53/263 (20%), Positives = 93/263 (35%), Gaps = 22/263 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTP---SSAIQFLTS 139 L+ N+ S+ + G K T K I + RK + + S Sbjct: 3 KGLSQNTLESYRRDIVIYLDFLGRNKKTILKATRKDIEKFLSERKEQGSKSRTVARNKVS 62 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLA 195 + L+K+ V + Y++ NP ++E + K T E++ S +E G + + Sbjct: 63 IVNLYKFLVMENYISKNPTDNLEVIRLKRVLPESLTTEEVDDLLSVHNEKTDKGLRDKAI 122 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVELPDGFMKLLAMTPIGKET 254 FE + SGLR S+ C ++ + + +K G V + D + +L Sbjct: 123 FELMYSSGLRVSEICSLKIEDIFFDEKYLKICGKGKRERIVPINDKALDILKRYIQTSRV 182 Query: 255 FFI----------NNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGA 302 + N K++ K K+G+ K+ H +R AT GA Sbjct: 183 VMVKGKKTSELFLNFRGDKISRVGIWKIVKEAMKKSGIEKNVYPHTLRHSFATHLIQHGA 242 Query: 303 TAHELMATYGWKTVDQAETYTKG 325 + G + E YT Sbjct: 243 DLRSVQRMLGHSDITTTEIYTHV 265 >gi|161611265|ref|YP_294803.2| site-specific tyrosine recombinase XerD [Ralstonia eutropha JMP134] Length = 305 Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 48/269 (17%), Positives = 88/269 (32%), Gaps = 24/269 (8%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFD---YRKITTKHIRSGVESRKH--TPSSAIQFLTSM 140 L+ N+ ++ + R I + + +R SS+ + L Sbjct: 27 GLSRNTMDAYRRDLSMLARWLHQSSNGGLLGIGDTELNAYFLARHPETRASSSNRRLAVF 86 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAF 196 R ++WA+R++ + +PC+ + K+ + ++ ++ G + R Sbjct: 87 RRFYQWALREQMIEADPCILLRPAKQPPRVPKTLSEAQVEALLEAPDTTTPLGLRDRTML 146 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPDGFMKLLAMT------ 248 E + SGLR S+ + + N + K V L Sbjct: 147 ELMYASGLRVSELTQMKTVEIGLNEGVARVVGGKGDKERLVPFGMQASDWLRRYLGSARP 206 Query: 249 ----PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302 + F+ + M F K A AG+ S H +R AT + GA Sbjct: 207 ALLAGRACDALFVTQRGEGMTRQAFWHLIKRHARDAGITAPLSPHTLRHAFATHLLNHGA 266 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRL 331 + G + + YT A R RL Sbjct: 267 DLRVVQLLLGHADISTTQIYTHVA-RERL 294 >gi|325971096|ref|YP_004247287.1| tyrosine recombinase xerC [Spirochaeta sp. Buddy] gi|324026334|gb|ADY13093.1| Tyrosine recombinase xerC [Spirochaeta sp. Buddy] Length = 300 Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 51/293 (17%), Positives = 100/293 (34%), Gaps = 22/293 (7%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKH 128 LI +Y L+ ++ + + DY IT I + + ++R Sbjct: 10 LIEDYTDYLAMQRRLSEATQSVYAHELALFLAA--GSDYETITASLIEAYIVIQVQTRHL 67 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187 + S + L+++R F + + NP L ++R ++K + + + Sbjct: 68 SERSVAKLLSALRSFFSFLQMSKIREDNPVLLIQRGRQKQSLPQVASVAQVDALLESIDT 127 Query: 188 ---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 G + R FE + GLR S++C V Q + ++ I M + Sbjct: 128 SDLLGFRDRTLFELIYSCGLRISEACTLQVSDYQKTSIRVVGKRHKIRIIPVGEIARMWV 187 Query: 245 ----------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSA 294 L + + F+ ++ F A AG++ H +R A Sbjct: 188 DAYLKDIRPKLIGMRLSTKALFVGRRGHQLTRQAMYKRFIAYCDVAGLDAKVHTLRHSFA 247 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347 T + GA + G + + YT D +L + + + D +D Sbjct: 248 THLLEGGADLRSVQELLGHSDIKTTQIYTH-VDTKQLQKAYEQFHAGIHDKED 299 >gi|167754200|ref|ZP_02426327.1| hypothetical protein ALIPUT_02493 [Alistipes putredinis DSM 17216] gi|167658825|gb|EDS02955.1| hypothetical protein ALIPUT_02493 [Alistipes putredinis DSM 17216] Length = 372 Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 59/363 (16%), Positives = 107/363 (29%), Gaps = 54/363 (14%) Query: 2 TPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHES-------------------T 42 P ++L P V R+G+ G+ IRL E Sbjct: 7 KPKIKLSPVV-----RNGREFVEVTFGNDNDIRLSLSKEENVLLVGGRAYLPAENFVLAE 61 Query: 43 FIPAYMS-------ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF 95 F Y+ A+ + P++E P Y + + ++ + Sbjct: 62 FFDRYVKMAFIDYSAIKETAPRKEEDKRPPLPEG--------YLEKLQQVRYSDHTVRVY 113 Query: 96 ESYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQE 151 SYF + +T I + + + Q + +++ + + Sbjct: 114 TSYFRDFQQYFEGRKIETVTPGEINDYLLYLIHEKNISSCQQNQRINAIK----FYYEKV 169 Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCR 211 C V R KR+ +KE++++ + F L +GLR S+ Sbjct: 170 LGQERRCYKVNRAKREKTLPDVLSKEEIKKILDVTVTDLRFFCMFSILYSAGLRISELLE 229 Query: 212 AGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK---MNA 266 + ++ K L MK L + + + Sbjct: 230 LKPGDINEPRSLIRVRQGKGKKDRYTLLSKPLMKKLTEYNRLYKPKVWLFEHRPGEPFTE 289 Query: 267 TQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + S KA A +AG+ K H +R AT + G + G + E Y Sbjct: 290 SIVSKRLKAAAREAGITKRIYPHLLRHSFATHLLEQGIDIKIVKELMGHNNIKTTERYVH 349 Query: 325 GAD 327 AD Sbjct: 350 IAD 352 >gi|329667430|gb|AEB93378.1| putative integrase/recombinase [Lactobacillus johnsonii DPC 6026] Length = 307 Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 43/302 (14%), Positives = 106/302 (35%), Gaps = 27/302 (8%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVESR 126 LI +++ ++ + + N+ S+ + D G + ++ ++ + +++ Sbjct: 6 DKLIKQFQDYLNYERNYSKNTVNSYLNDLIEAKDFFRENGGFSGWDQVKSRDVEIFLQNL 65 Query: 127 K---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + ++ + ++S+R +++ V++E + +P ++ + + + + +++M+Q Sbjct: 66 ATQNRSRTTQARKMSSLRSFYRFLVKREVLENDPMQTISLRLGEKKLPQFFYEKEMRQVF 125 Query: 184 S----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238 + R FE +G+R S+ + + ++ I K V Sbjct: 126 DSLAGHEKLVVRNRAMFELFYATGMRLSEMASLKLDQIDFDLKIILVHGKGNKDRYVPFG 185 Query: 239 DGFMKLLAMTPIGKE-----------TFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285 L F+NN QK+ + KAGV Sbjct: 186 KDAASALKEYCDESRLALLGKNEDLGYVFLNNRGQKLTGRGIEYIMQQVFIKAGVGGKVH 245 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345 H +R AT + GA + G +++ + YT L + Sbjct: 246 PHMLRHSFATEMLNNGADLRSVQELLGHESLSTTQIYTHVT-MKHLQADYQKFFPRKDKK 304 Query: 346 DD 347 D+ Sbjct: 305 DE 306 >gi|117928448|ref|YP_872999.1| tyrosine recombinase XerD [Acidothermus cellulolyticus 11B] gi|117648911|gb|ABK53013.1| tyrosine recombinase XerD [Acidothermus cellulolyticus 11B] Length = 311 Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 49/288 (17%), Positives = 96/288 (33%), Gaps = 33/288 (11%) Query: 69 TTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVE 124 T+ L+ Y LA N+ + + + + G D R +T +HI + + Sbjct: 4 RTVGDLVEAYLAHVAVEKGLAKNTVAGYRRDLRRYQEFLEQRGTTDPRAVTEEHITAFLA 63 Query: 125 SRKHT--------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + + SS+ + + ++R L ++A A +P V P + T Sbjct: 64 ALRTGDADHPPLAVSSSARAVVAVRGLHRFAAMDGITADDPSRDVRPPTPGRRLPKAITV 123 Query: 177 EDMQQFKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGT 231 ++++ + + R E L +G R S++ + L + ++ K Sbjct: 124 AEVERLLAAVDGHAPRELRDRALLEVLYGTGARISEAVGLAIDDLDLDAGLVRLRGKGSK 183 Query: 232 IITVELPDGFMKLLAMTPIGKET--------------FFINNDKQKMNATQFSIWFKAKA 277 V L L F+N +++ + A Sbjct: 184 QRVVPLGGYARSALREYLTAGRPALLAAARSGSARGAVFLNARGGRLSRQSAWTVLRRAA 243 Query: 278 TKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 +AG+ S H +R AT + GA + G +V + YT Sbjct: 244 LRAGLATVISPHTLRHSFATHLLEGGADIRVVQELLGHASVTTTQIYT 291 >gi|303232711|ref|ZP_07319396.1| phage integrase, N-terminal SAM domain protein [Atopobium vaginae PB189-T1-4] gi|302481197|gb|EFL44272.1| phage integrase, N-terminal SAM domain protein [Atopobium vaginae PB189-T1-4] Length = 324 Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 34/296 (11%), Positives = 86/296 (29%), Gaps = 42/296 (14%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR---KITTKHIRSG---V 123 ++ I EY + + + + N+ ++ + D IT + + V Sbjct: 3 VREAIDEYLRYIRFERNFSANTLEAYARDLNAYCEFLTDKHIDTPVHITRRVVEEYLSYV 62 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + PSS + +++++ ++ V ++ +P + PK+ + + ++++ Sbjct: 63 ATLDKAPSSVQRCVSAIKSFHRFMVIEQICTAHPTADIALPKKPALLPQVLSHTEVERLL 122 Query: 184 SFWSEG----------------------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221 + + E L GLR S+ C ++ Sbjct: 123 DEPFLQELQPAAHTTKQGTTTMTKAACFWRDKAILELLYGCGLRVSELCNLTCDNVSRTD 182 Query: 222 FSIKTQKT-GTII-----------TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269 ++ D + L F++ ++ Sbjct: 183 EVLRVIGKGSKERVVPLIGSALAAYTRYVDTWRAELYNPRRSNHAVFLSVRGSAISRQAV 242 Query: 270 SIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + G+ H +R AT + G + G ++ + YT Sbjct: 243 FALVEKYGRMVGIRGLHPHTLRHTYATHLLEGGMDLRIVQELLGHASIATTQLYTH 298 >gi|56420265|ref|YP_147583.1| integrase/recombinase [Geobacillus kaustophilus HTA426] gi|56380107|dbj|BAD76015.1| integrase/recombinase [Geobacillus kaustophilus HTA426] Length = 301 Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 37/294 (12%), Positives = 94/294 (31%), Gaps = 30/294 (10%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKIT----TKHIRS 121 + I E+ + ++N+ + IT + I+ Sbjct: 3 FRQAIDEFVLYLQIEKNYSLNTVDGYAYDLRCFENFLIQHGYSVQLHDITKTHVRRFIQH 62 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT-----K 176 + P + + ++ ++ K+ V++ + + + ++ PK ++ + K Sbjct: 63 QITKENVKPRTIYRRISCLKSFSKYCVKENLIDSDFMIGIDTPKTDSKLPTYMSLSELRK 122 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 + + L F+ L +G+R S+ + + + +I+ G + Sbjct: 123 LFHFLEQDNSRMAMRNHLLFKLLATTGMRRSEIVELTWEQIDLSNNTIRIYGKGKKERLL 182 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKM---------NATQFSIWFKAKATKAGVN---K 284 + L + + + + Q + N FK KAG+ Sbjct: 183 PLHPMVVPLIKSYMESLEEYQLHPSQPVFLNKNGKKLNPRGLHKIFKEILQKAGLPPQRF 242 Query: 285 SAHGVRKFSATISADAG---ATAHELMATYGWKTVDQAETYTKG-ADRIRLGIK 334 S H +R AT+ + G +++ + YT ++ + I+ Sbjct: 243 SLHHLRHTFATLLIQENKENVDLRTVQELLGHESLVTTQVYTHVDFEQKKKAIE 296 >gi|89068699|ref|ZP_01156085.1| tyrosine recombinase [Oceanicola granulosus HTCC2516] gi|89045662|gb|EAR51724.1| tyrosine recombinase [Oceanicola granulosus HTCC2516] Length = 307 Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 38/290 (13%), Positives = 79/290 (27%), Gaps = 29/290 (10%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRS 121 L + A + + ++ + + G ++ +R+ Sbjct: 9 LTDAAEAWLAHARALRGASEKTINAYRTDVLGFLAFMAEHHGGQQGLAPLARVGVSDMRA 68 Query: 122 GVESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + SA + L++++ ++W +E LS PK + + RP + Sbjct: 69 WMAHERGRGVSARSLARALSAVKGFYRWIAEREGFEPTAVLSTRSPKFQKKLPRPLAVDA 128 Query: 179 MQQFKSFW-------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 Q ++ L GLR S++ + K G Sbjct: 129 AQAMIDRVELQAREGWVAARDVAVVTLLYGCGLRISEALGLTGAAVPLPEVVRIVGKGGK 188 Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKM-------NATQFSIWFKAKATKAGVNK 284 V + + + N + + G+ Sbjct: 189 ERVVPVIAPARDAVDAYARLCPHPLEPHLPLFRGVRGGALNPRAIQKVMEQARLQLGLPA 248 Query: 285 S--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 + H +R AT AG + G ++ + YT D RL Sbjct: 249 TATPHALRHSFATHLLGAGGDLRSIQELLGHASLSTTQAYT-AVDTARLM 297 >gi|87309301|ref|ZP_01091437.1| integrase/recombinase [Blastopirellula marina DSM 3645] gi|87287940|gb|EAQ79838.1| integrase/recombinase [Blastopirellula marina DSM 3645] Length = 291 Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 44/282 (15%), Positives = 94/282 (33%), Gaps = 25/282 (8%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--- 128 ++Y +S LA N+ ++ + R G + R + + V Sbjct: 2 SAAFTDYLQSE--CHLAANTVAAYRRDLVRFERWLGAREIRTLRVGELSDYVAWLYKEEL 59 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 P+S + + S+++ F++ + + N + K + + Sbjct: 60 APASIARAVVSLKIFFRYLQLEGILQDNLVELLGSQKIWRRIPSVIAPHKIDDLLTAPWS 119 Query: 189 GS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-------------QKTGT 231 + R E L +G R S+ + + + +K QK+ Sbjct: 120 EDPYWRRDRALLEVLYATGCRASEVSGLRMDDVHLDEGYVKCEGKGSKQRIAPLAQKSAR 179 Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGV 289 ++ L + +L F++ ++++ K A +AG++ S H + Sbjct: 180 VVKTYLDEERPRLSKKNLRDAAFLFLSRSGKRLSRIAIWELVKKYAARAGIDPDVSPHSL 239 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 R AT GA + G ++ + YT D+ RL Sbjct: 240 RHSFATHLLAGGADLRHVQEMMGHASIATTQIYTH-VDQSRL 280 >gi|218961949|ref|YP_001741724.1| site-specific recombinase, phage integrase family [Candidatus Cloacamonas acidaminovorans] gi|167730606|emb|CAO81518.1| site-specific recombinase, phage integrase family [Candidatus Cloacamonas acidaminovorans] Length = 298 Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 50/282 (17%), Positives = 95/282 (33%), Gaps = 29/282 (10%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVES 125 + I+++ + + +++ +Q G+ D + IT +IR Sbjct: 2 EKYIADFCNYLALEGKSPRTITAYKLDLEQFHSFIQRYFENGEVDIKGITVLNIRDFFRF 61 Query: 126 RKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 P S + ++ F++ R ++ NP ++RPK + + +T+E+++ Sbjct: 62 LNEKPDCNRSLARKSAALNSFFRYCKRSGFIQNNPMEKIKRPKYEVPLPKCFTEEEVRTL 121 Query: 183 KSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVEL 237 S S + + E L SGLR S+ +Q + ++ V L Sbjct: 122 LSIPDTDSPFGIRNKAILETLYSSGLRISELAGIRLQDIDLKRGLVRVTGKGNKQRIVPL 181 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWFKAK----ATKAGVNK 284 ++ + + F N + Q I K A G Sbjct: 182 GSYAIEAINNYLKVRPQFMRENSPDLLFLTKSGKAFDTKQLDIILKRYFELVAKAKG--Y 239 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 S H +R AT GA + G + ETYT + Sbjct: 240 SPHSLRHSFATHLLSRGADLRAIQELLGHSLLSTTETYTHIS 281 >gi|258648906|ref|ZP_05736375.1| tyrosine recombinase XerD [Prevotella tannerae ATCC 51259] gi|260850938|gb|EEX70807.1| tyrosine recombinase XerD [Prevotella tannerae ATCC 51259] Length = 296 Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 49/293 (16%), Positives = 96/293 (32%), Gaps = 25/293 (8%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKHT 129 L +Y+ L+ N+R ++ +++I D + + E+ Sbjct: 2 ELTDKYKTYILLEQGLSDNTREAYMHDVEKLIDFLQQEGIDILNVKLDDLHRFTEALTDV 61 Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK--- 183 S + L+ +R + + + + Y+ +P +E PK + E++ Sbjct: 62 GIMARSINRILSGVRSFYHFLLLEGYLEADPTQLLESPKVGAHLPTVLSIEEVDALLAVI 121 Query: 184 -SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 EG++ E L GLR S+ C + L + I+ V + Sbjct: 122 DQSTKEGARDHAIIEILYSCGLRVSELCFLMLSDLYLDEGFIRIIGKGNKQRIVPISPRA 181 Query: 242 MKLLAMTPIGKETFFINN-----------DKQKMNATQFSIWFKAKATKAGVNK--SAHG 288 +K L + + I + ++ K A +AG+ K S H Sbjct: 182 VKELKNWLLIRHEINIKKGEEDYVFVSALRGKHLSRITVFHNLKVYAAEAGITKNISPHT 241 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 +R AT + GA + G + + YT DR + + Sbjct: 242 LRHTFATHLLEGGANLRAIQMMLGHTDLSTTQVYT-NIDRRFIRQQILDHFPR 293 >gi|255264826|ref|ZP_05344168.1| site-specific tyrosine recombinase XerC [Thalassiobium sp. R2A62] gi|255107161|gb|EET49835.1| site-specific tyrosine recombinase XerC [Thalassiobium sp. R2A62] Length = 304 Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 43/290 (14%), Positives = 89/290 (30%), Gaps = 29/290 (10%) Query: 71 LKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRS 121 L+ + + S A + N+ ++++ + G +I +R+ Sbjct: 6 LRDALEGWLASTAALNGTSENTTKAYQADVAGFLAFMTVHHGGAQGLGPISQICVSDMRA 65 Query: 122 GVESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + S + +A + L++++ + W +E LS PK + + RP ++ Sbjct: 66 WMASERGRGVAARSLARSLSAVKTFYCWFAEREGFEPTAVLSTRAPKFQKKLPRPLAEDA 125 Query: 179 MQQFKSF-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 + ++ L GLR S++ + + K G Sbjct: 126 ARAMIDTVELQAAEPWVAARDMAVMTLLYGCGLRISEALGLCGRDVPLPQTLRILGKGGK 185 Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKM-------NATQFSIWFKAKATKAGVNK 284 V + +A + N +A + G+ Sbjct: 186 ERVVPVIPQACDAVAAYLRQCPYPVEPDAPLFRGVRGGALNPRAIQKVTEAARLQLGLPA 245 Query: 285 S--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 + H +R AT AG + G ++ +TYT D RL Sbjct: 246 TATPHAMRHSFATHLLSAGGDLRAIQELLGHASLSTTQTYT-AVDTARLM 294 >gi|78222639|ref|YP_384386.1| tyrosine recombinase XerD subunit [Geobacter metallireducens GS-15] gi|78193894|gb|ABB31661.1| tyrosine recombinase XerD subunit [Geobacter metallireducens GS-15] Length = 295 Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 49/283 (17%), Positives = 96/283 (33%), Gaps = 25/283 (8%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD------YRKITTKHIRSGVES 125 + + LA NS S+ + + + R + + ++ Sbjct: 3 QYLDLFLNYLLVEKGLAKNSLDSYGRDMIRYLDFLEKRNCGEPSAVRPVDVADFLAHLKD 62 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 P S + L+++R+ ++ + + Y NP +E PK + + +++ + Sbjct: 63 CGLAPRSRARALSAVRMFHRFLLVEGYAEANPTAIIEAPKTLAKLPQILAGREVEALLAA 122 Query: 186 WSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDG 240 S + R E L +GLR S+ G++ + + K G V + + Sbjct: 123 PGSDSAQDMRDRAMLELLYATGLRVSELVGLGLRDVNVTAGYLMAFGKGGKERLVPMGES 182 Query: 241 FMKLLAMTPIGKETFFINNDKQ----------KMNATQFSIWFKAKATKAGVNKS--AHG 288 ++ N +M F K +A +AG+ K+ H Sbjct: 183 ACAAVSRYLAEARPEMDRNGDNAYLFLTRLGDRMTRQAFWNIIKKRAIEAGIRKTISPHT 242 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +R AT + GA + A G + + YT R RL Sbjct: 243 LRHSFATHLLENGADLRSVQAMLGHADLATTQIYTHVT-RERL 284 >gi|332159818|ref|YP_004296395.1| site-specific tyrosine recombinase XerC [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318607639|emb|CBY29137.1| tyrosine recombinase XerC [Yersinia enterocolitica subsp. palearctica Y11] gi|325664048|gb|ADZ40692.1| site-specific tyrosine recombinase XerC [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862565|emb|CBX72719.1| tyrosine recombinase xerC [Yersinia enterocolitica W22703] Length = 303 Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 45/278 (16%), Positives = 90/278 (32%), Gaps = 21/278 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGVESRKHTP 130 + + + L+ + S+ ++ + G ++ + +RS V K Sbjct: 12 VEAFLRYLKVERQLSPLTITSYRRQLQALMEMGEQMGLAHWQTLDAAQVRSLVSRSKRAG 71 Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 SS L+++R W V Q + NP V P+ + +++ + Sbjct: 72 LHSSSLALRLSALRSFLNWLVSQGVLQANPAKGVSTPRSGRHLPKNIDVDEVDKLLDIDL 131 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243 + R E + +GLR S+ +H+ + K V + +K Sbjct: 132 NDPLAVRDRAMLEVMYGAGLRLSEMVGMNCKHVDLASGDVWVMGKGSKERKVPIGKTAVK 191 Query: 244 LLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 L + F+ N ++++A F K GV + H +R A Sbjct: 192 WLEHWLELRELFEPQDDAIFLANTGKRISARNVQKRFAEWGVKQGVSSHIHPHKLRHSFA 251 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 T ++ + G + + YT D L Sbjct: 252 THMLESSGDLRAVQELLGHANLTTTQIYTH-LDFQHLA 288 >gi|283769465|ref|ZP_06342361.1| phage integrase, N-terminal SAM domain protein [Bulleidia extructa W1219] gi|283103733|gb|EFC05119.1| phage integrase, N-terminal SAM domain protein [Bulleidia extructa W1219] Length = 297 Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 52/281 (18%), Positives = 102/281 (36%), Gaps = 23/281 (8%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGVESR 126 L ++ + + S+E+ Q + + +K+T + ++ + + Sbjct: 3 LDQAFQQFHLHLEINQGKSPRTVRSYENDLKQYLAYLKEKHILDSQKVTLQVVQDFLSQQ 62 Query: 127 K--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + +S + TS+R + + NP ++ K +T + E+++Q + Sbjct: 63 STIKSSNSVVHMATSIRNFHE-DIEFSTGEENPVSLIQVRKNETYLPSFLSVEEVKQLLN 121 Query: 185 FWSEGSQ----PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239 ++ R E + GLR S+ C V +Q ++ K V +P+ Sbjct: 122 SFTRDDPKQELNRTILELIYACGLRISELCSLTVAQVQLETGILRILGKGNKERIVPIPN 181 Query: 240 GFMKLLA---------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHG 288 +K L TFFIN+ ++ A + K KA + G + + H Sbjct: 182 QVVKDLDYYLNLIRPIWNQHKTNTFFINHLGNRITARSIQLLLKQKAMECGFQKDITPHS 241 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R AT AGA + G + E YT +R Sbjct: 242 LRHTYATHLLQAGADLRIIQELLGHSNIKTTEIYTHVQNRQ 282 >gi|221194870|ref|ZP_03567927.1| tyrosine recombinase XerD [Atopobium rimae ATCC 49626] gi|221185774|gb|EEE18164.1| tyrosine recombinase XerD [Atopobium rimae ATCC 49626] Length = 313 Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 45/296 (15%), Positives = 106/296 (35%), Gaps = 32/296 (10%) Query: 74 LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRK 127 + E+ +L+ N+ ++ I + + H S ++ + Sbjct: 13 YVDEFIAYLRTVRNLSDNTTRAYSVDLASYISWCKREELDPLQATHRSLRAYLSYLDQAR 72 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 ++ + + L+++R +KW +++Y+ ++P L + P+ + + ED+Q+ Sbjct: 73 YSARTLNRHLSALRGFYKWLNKEKYLEVDPSLILTSPRTSRRLPQTMSDEDVQKLLLSCD 132 Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFM 242 + + R E + +G R S+ + + + ++ K V L Sbjct: 133 TDTAVGLRDRAILECMYATGARISEISHLDREDVDMSQGVVRLFGKGSKERDVPLYKTAR 192 Query: 243 KLLAMTPIGKETF------------------FINNDKQKMNATQFSIWFKAKATKAGVN- 283 L G + F++ +M+A F+ KAG++ Sbjct: 193 DWLEAYMYGARSQLIGKGRKSLRNPREEKALFVSIRGHRMSADVLRKMFETYVKKAGLDP 252 Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSR 337 + H +R AT GA + G +++ + YT +R++ K + Sbjct: 253 MLTPHAMRHTFATELLSGGADLRVVQELLGHQSLSTTQIYTHLSIERLKDAAKQAH 308 >gi|149201080|ref|ZP_01878055.1| site-specific tyrosine recombinase XerC [Roseovarius sp. TM1035] gi|149145413|gb|EDM33439.1| site-specific tyrosine recombinase XerC [Roseovarius sp. TM1035] Length = 306 Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 45/289 (15%), Positives = 92/289 (31%), Gaps = 29/289 (10%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSG 122 + +S + + A N+ ++ +R G +ITT +R+ Sbjct: 7 RDALSTWLATQKALKGAAANTIDAYARDVGDFLRFMTLHNGETQGLGALSRITTSDMRAW 66 Query: 123 VESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + + P S + L++++ ++W +E L++ PK + + RP + E Sbjct: 67 MAHTRGGDVGPRSLARKLSAVKSFYRWLSEREGFEPTAVLAIRSPKFQRKLPRPLSPEAA 126 Query: 180 QQFKSF-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 + ++ + L GLR S++ L K G Sbjct: 127 SDMINTLDAQSLTPWIAARDQAVVTLLYGCGLRISEALSLTGADLPLGQVLRIIGKGGKE 186 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKM-------NATQFSIWFKAKATKAGVNKS 285 V + + +A N + + + + G+ + Sbjct: 187 RLVPVIEPARAAVAQYARLCPYDIPRNGPLFLGARGGALSPRLIQKVMEQARAQLGLPAT 246 Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R AT +AG + G ++ + YT G D RL Sbjct: 247 ATPHAMRHSFATHLLNAGGDLRAIQELLGHASLSTTQAYT-GVDTARLM 294 >gi|258423907|ref|ZP_05686792.1| tyrosine recombinase XerC [Staphylococcus aureus A9635] gi|257845936|gb|EEV69965.1| tyrosine recombinase XerC [Staphylococcus aureus A9635] Length = 298 Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 37/275 (13%), Positives = 90/275 (32%), Gaps = 21/275 (7%) Query: 76 SEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVESRKHT 129 + + + + ++ S++ Q + + T ++ S + S Sbjct: 6 EAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLEQEHLQLNTFEYKDARNYLSYLYSNHLK 65 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 +S + ++++R +++ + + INP + + PK++ + + +E+M+ E Sbjct: 66 RTSVSRKISTLRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEALFKTVEED 125 Query: 190 S----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKL 244 + + R+ E L +G+R S+ Q + K V + Sbjct: 126 TSKSLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVLGKGSKERFVPFGAYCRQS 185 Query: 245 LAMTPIGKETFFINNDKQ--------KMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSA 294 + + N + + AGV H +R A Sbjct: 186 IENYLEHFKPIQSCNHDFLIVNMKGEAITERGVRYVLNDIVKRTAGVSEIHPHKLRHTFA 245 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 T + GA + + G + YT +++ Sbjct: 246 THLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQ 280 >gi|228960047|ref|ZP_04121711.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar pakistani str. T13001] gi|228799563|gb|EEM46516.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar pakistani str. T13001] Length = 299 Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 43/287 (14%), Positives = 96/287 (33%), Gaps = 27/287 (9%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126 +K L+ + + + + S+++ + ++ G + +T +R + + Sbjct: 3 VKKLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYADVRLYLTTL 62 Query: 127 ---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----M 179 K S + ++S+R L+++ +R+ Y NP PK++ + E+ Sbjct: 63 YDEKLARKSVARKVSSLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELF 122 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238 + + G + + E + +G+R S+ + + + +I K + Sbjct: 123 EVSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFG 182 Query: 239 DGFMKLLAMTPIG------------KETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284 L F+N + + KA + Sbjct: 183 SYAQDSLITYIENGRKQLVNKTDEDSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRI 242 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 S H +R AT D GA + G + + + YT + RL Sbjct: 243 SPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTH-VSKERL 288 >gi|228998607|ref|ZP_04158194.1| Tyrosine recombinase xerC [Bacillus mycoides Rock3-17] gi|229006107|ref|ZP_04163795.1| Tyrosine recombinase xerC [Bacillus mycoides Rock1-4] gi|228755183|gb|EEM04540.1| Tyrosine recombinase xerC [Bacillus mycoides Rock1-4] gi|228761075|gb|EEM10034.1| Tyrosine recombinase xerC [Bacillus mycoides Rock3-17] Length = 302 Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 44/287 (15%), Positives = 96/287 (33%), Gaps = 27/287 (9%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126 +K L+ + + + + S+++ + ++ G + +T +R + + Sbjct: 6 VKKLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYVDVRLYLTTL 65 Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----M 179 S + ++S+R L+++ +R+ Y NP PK+ + E+ Sbjct: 66 HDEKLARKSVARKVSSLRSLYRFLMREGYREDNPFALASLPKKDLSIPKFLYVEELEKLF 125 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238 + G + + E + +G+R S+ + + ++ +I T K V Sbjct: 126 EVSDVKTPLGQRDQALLELMYATGIRVSECVSLQLTDIDFSVGTILVTGKGKKQRYVPFG 185 Query: 239 DGFMKLLAMTPI------------GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284 L + F+N + + KA + Sbjct: 186 SYAQDALITYIENGRKQLAKKTEEHSQMVFLNAKGKPLTDRGVRYILNELIKKASLTMRI 245 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 S H +R AT D GA + G + + + YT + RL Sbjct: 246 SPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTH-VSKERL 291 >gi|229824242|ref|ZP_04450311.1| hypothetical protein GCWU000282_01546 [Catonella morbi ATCC 51271] gi|229786596|gb|EEP22710.1| hypothetical protein GCWU000282_01546 [Catonella morbi ATCC 51271] Length = 331 Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 44/283 (15%), Positives = 95/283 (33%), Gaps = 25/283 (8%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIR---SGVES 125 I+ + + + + +++ G D ++I + +R + + Sbjct: 32 EAIARFLQYISVERRYSQKTLAAYQQDLAAFQSFIETSGGGDLKQIAYQDVRLYLAYLNE 91 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-----WTKEDMQ 180 + + +S + L+S+R F + + Q ++ NP V+ +K + T+ Sbjct: 92 QAYAKTSIRRKLSSLRSFFTYCLSQGWIETNPMELVQYQVKKKTLPQFFYEQELTQLFDS 151 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239 +K + R+ E L +G+R S+ ++ L + I+ K V L D Sbjct: 152 LYKREDDAAWRDRMLLEVLYATGMRVSELSELSLERLNLEVQLIRVLGKGNKERIVPLGD 211 Query: 240 GFMKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWFKAKAT--KAGVNKSAHG 288 + + N+ M+ Q K+ + H Sbjct: 212 SATQAIRDYLSHLRPKIDRNNSPYLLLTDKGAPMSPRQIRTRLKSLVEEQAMNLKIYPHK 271 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330 +R AT + GA + G + + YT D++R Sbjct: 272 LRHSFATHLLNKGADLRTVQELLGHANLSSTQIYTHVTKDQLR 314 >gi|154494032|ref|ZP_02033352.1| hypothetical protein PARMER_03377 [Parabacteroides merdae ATCC 43184] gi|154086292|gb|EDN85337.1| hypothetical protein PARMER_03377 [Parabacteroides merdae ATCC 43184] Length = 301 Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 49/295 (16%), Positives = 94/295 (31%), Gaps = 24/295 (8%) Query: 75 ISEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKH--- 128 I Y+ L+ NS ++ + D++ Y +T ++ V Sbjct: 8 IERYKTYLRLEKALSANSIDAYLTDLDKLTNFVESEGKKYADVTYDDLQQFVARLHDIGI 67 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-- 186 P S + ++ ++ +++ +Y+ +P +E PK + T ++ Sbjct: 68 HPRSQARIISGIKSFYRFLFLDDYITTDPTELLESPKIGLKLPEVLTVNEINSILDTIDL 127 Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFMK 243 EG + R E L GLR S+ + + F K V + + +K Sbjct: 128 TLPEGQRNRAMLEVLYSCGLRVSELVSLRFTDVYFDEGFIKVEGKGSKQRLVPISETAIK 187 Query: 244 LLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAGVNK--SAHGVRK 291 + + + + + + K + AG+ K S H R Sbjct: 188 EIKNYLYDRNHVAVKKGFEDILFLSRRGTALSRIMVFHIIKQQTEMAGIKKNVSPHTFRH 247 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346 AT + GA + G + + E YT DR L + D Sbjct: 248 SFATHLLEGGANLLAIQEMLGHEKITTTEIYTH-IDRQFLRKEILEHHPRSKPRD 301 >gi|297620964|ref|YP_003709101.1| Tyrosine recombinase XerD [Waddlia chondrophila WSU 86-1044] gi|297376265|gb|ADI38095.1| Tyrosine recombinase XerD [Waddlia chondrophila WSU 86-1044] Length = 292 Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 52/269 (19%), Positives = 94/269 (34%), Gaps = 22/269 (8%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHT---PS 131 Y S L N+ +++ I G + ++ + I + K S Sbjct: 11 YLGSE--KGLTQNTIEAYQRDVFSFISHLESKGIQGFNEVGQEEIVDFLSYLKSRQLAVS 68 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS---- 187 + + L +++V F++ R+ V N L ++ PK T E+M+ + Sbjct: 69 TISRHLIAIKVFFRFLKREGVVENNVSLYLQSPKGWQIIPDVLTMEEMEILLNQPDPETS 128 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247 EG + R E L GLR S+ C+ ++ L+ + + I + Sbjct: 129 EGVRDRAILELLYACGLRVSELCQMKIEDLEEETVRVFGKGRKERIVPLGSHASQAINRY 188 Query: 248 TPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATIS 297 + F+N + MN K +AG+ KS H +R AT Sbjct: 189 LAKRADCKSIDEAGYLFVNKRGKPMNRVLIWKMIKEYGAQAGITKSLSPHTMRHSFATHL 248 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGA 326 D GA + G ++ + YT + Sbjct: 249 LDNGAELRVIQEMLGHASISSTDRYTHIS 277 >gi|212715582|ref|ZP_03323710.1| hypothetical protein BIFCAT_00481 [Bifidobacterium catenulatum DSM 16992] gi|212660949|gb|EEB21524.1| hypothetical protein BIFCAT_00481 [Bifidobacterium catenulatum DSM 16992] Length = 317 Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 39/298 (13%), Positives = 92/298 (30%), Gaps = 42/298 (14%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSGVESR 126 + +I ++ L+ + ++ + + + + D +TT+ + + V Sbjct: 4 FERMIRQFLAHIDVERGLSKATVSAYGADLKKYRQWLANRGINDITSVTTQDVENYVAFL 63 Query: 127 KHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + SA + L S+ ++AV + VA + V+ PK + +++ + Sbjct: 64 DESGESARSKARRLASIHAFHRFAVDEHSVADDVSAQVKAPKGASTLPDVLAIDEVARLL 123 Query: 184 SFWSEG------------------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225 + + EF+ +G R S++C A + + + Sbjct: 124 EAIPVSQNRACDDASLEVSDDPVMLRDKALLEFMYATGARVSEACGANLDDVDTESRIAR 183 Query: 226 -TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--------------NATQFS 270 K V + + ++ + K + Sbjct: 184 LMGKGSKQRLVPVGSYACEAISRYVRSGRPILESKSKGPQERRALFLNKRGRRLSRQSVW 243 Query: 271 IWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 + +A ++K H +R AT GA + G +V + YT + Sbjct: 244 EIIRVAGERAHIDKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVS 301 >gi|313887306|ref|ZP_07820997.1| phage integrase, N-terminal SAM domain protein [Porphyromonas asaccharolytica PR426713P-I] gi|312923225|gb|EFR34043.1| phage integrase, N-terminal SAM domain protein [Porphyromonas asaccharolytica PR426713P-I] gi|332176305|gb|AEE11995.1| Tyrosine recombinase xerC [Porphyromonas asaccharolytica DSM 20707] Length = 314 Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 51/292 (17%), Positives = 94/292 (32%), Gaps = 24/292 (8%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR--- 126 LI Y+ L+ NS S+ D++ D R++ +H+ + Sbjct: 8 QLILRYKTYLRLEQHLSDNSIDSYLYDVDKLYTYIEDMGLSLREVELQHLNNFAAHLLDL 67 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + S + L+ ++ F++ +E + +P ++ P + T ++ Sbjct: 68 GISMRSLARVLSGVKSFFRFLTLEEEIERDPTDMLQTPPIHKKLPEVLTLAEIDSLLGAI 127 Query: 187 SEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDG- 240 E S+ E L GLR S+ C + + K V + Sbjct: 128 DEDRIEASRDTAIIEVLYSCGLRVSELCGLTYSDVFLDEGYLHVWGKGRKERLVPMSPKA 187 Query: 241 ---FMKLLAMTPIGKETFFINND------KQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 + L + Q ++ + A +AG+ K S H + Sbjct: 188 VADVQRYLNDPYRYNAKPEYDQYLFISRRGQPISRITVFCLIRTLAEQAGIQKEISPHTL 247 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 R AT + GA H + G +++ E YT DR L R Sbjct: 248 RHSFATHLLEGGADLHAIQLMMGHESIATTEVYTH-VDRSALRADILRYHPR 298 >gi|257896182|ref|ZP_05675835.1| phage integrase [Enterococcus faecium Com12] gi|293377182|ref|ZP_06623390.1| tyrosine recombinase XerC [Enterococcus faecium PC4.1] gi|257832747|gb|EEV59168.1| phage integrase [Enterococcus faecium Com12] gi|292644202|gb|EFF62304.1| tyrosine recombinase XerC [Enterococcus faecium PC4.1] Length = 301 Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 43/283 (15%), Positives = 90/283 (31%), Gaps = 29/283 (10%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFDYRKITTKHIRSGVESR 126 T + Y + ++ ++E + +SGD D K +R + + Sbjct: 5 TWEQKFLRYL--IVERGYSEKTKEAYEEDILHFKHFLEESGDADLLKAEYFTVRVYLSAL 62 Query: 127 K-----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 ++ +S + + S+R +++ +++E + NP V K+ R + + +MQ Sbjct: 63 ADHRPSYSRNSISRKIASLRSFYQYLLKEEVIKENPFSYVHLKKKNLRLPRFFYENEMQA 122 Query: 182 FKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVE 236 + R E L SG+R S+ V + + + K Sbjct: 123 LFDSVAGDSPLDLRNRALLEVLYGSGIRLSECSNLLVSDIDFDSEVMLIHGKGNKERYAP 182 Query: 237 LPDGFMKLLA------------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN- 283 L L + F+N+ + + T K+ ++ Sbjct: 183 LGSFAQDALQEYFTEGRQVLMTKYHEEHDIVFVNHHGKPITPTGIEYVLNQIIKKSSLDS 242 Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 H +R AT + GA + G + + Y Sbjct: 243 DIHPHMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHV 285 >gi|149915062|ref|ZP_01903591.1| Possible integrase/recombinase [Roseobacter sp. AzwK-3b] gi|149811250|gb|EDM71087.1| Possible integrase/recombinase [Roseobacter sp. AzwK-3b] Length = 329 Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 83/324 (25%), Positives = 148/324 (45%), Gaps = 15/324 (4%) Query: 31 RRIRLP-YPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA- 88 R+I L P F+ Y A G P+ + P +L WLI+++ KS A Sbjct: 7 RKIALGVDPDHPEFMERYTRARNGKRPEIPREED-KAIPQSLSWLIAKFEKSMQERVRAG 65 Query: 89 ---VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFK 145 + +++D++ GD ++ I +S TP +A + ++R L+ Sbjct: 66 AMHPGTLKQRSAFYDRLRAPYGDKHM-EMPRSKIIEIRDSMIATPGAADNMVKALRALYA 124 Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205 W+V +V NP + + R T G PW+ +D++ FK S+GS LA +++ R Sbjct: 125 WSVENGFVRSNPASGIGKINRGT-GATPWSIDDLRAFKDHHSKGSMAHLALTLFMFTACR 183 Query: 206 CSDSCRAGVQHLQ-----NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND 260 SD G QH + +K +TV + +A + T+ +N Sbjct: 184 ISDVVILGRQHEIERGGITYLDWQPAKKGSARVTVPILPPLADAIAAQKVVGSTYLLNGH 243 Query: 261 KQKM-NATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 + +A F WF+ + +AG++ +S HG+RK + + A GAT + +MA +G Sbjct: 244 GKPFASAAAFGNWFRDRVREAGLDGRSPHGIRKAAGELMALQGATQYHIMAVHGHTQAKT 303 Query: 319 AETYTKGADRIRLGIKNSRRISSV 342 +E YT+G +R RL + ++++S+ Sbjct: 304 SEGYTRGVNRQRLAAEAMQKMASM 327 >gi|298694544|gb|ADI97766.1| Site-specific tyrosine recombinase [Staphylococcus aureus subsp. aureus ED133] Length = 298 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 36/276 (13%), Positives = 88/276 (31%), Gaps = 23/276 (8%) Query: 76 SEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH------ 128 + + + + ++ S++ Q + ++ T R + Sbjct: 6 EAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLEQEHL-QLNTFEYRDARNYLSYLYSNHL 64 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +S + ++++R +++ + + INP + + PK++ + + +E+M+ E Sbjct: 65 KRTSVSRKISTLRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEALFKTVEE 124 Query: 189 GS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMK 243 + + R+ E L +G+R S+ Q + K V + Sbjct: 125 DTSKSLRDRVVLELLYATGIRVSELVNIKKQDIDFYANGVTVLGKGSKERFVPFGAYCRQ 184 Query: 244 LLAMTPIGKETFFINNDKQ--------KMNATQFSIWFKAKATK-AGV-NKSAHGVRKFS 293 + + N + + AGV H +R Sbjct: 185 SIENYLEHFKPIQSCNHDFLIVNMKGEAITERGVRYVLNDIVKRTAGVSEIHPHKLRHTF 244 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + GA + + G + YT +++ Sbjct: 245 ATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQ 280 >gi|254427826|ref|ZP_05041533.1| tyrosine recombinase XerC [Alcanivorax sp. DG881] gi|196193995|gb|EDX88954.1| tyrosine recombinase XerC [Alcanivorax sp. DG881] Length = 307 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 43/297 (14%), Positives = 100/297 (33%), Gaps = 25/297 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTP 130 ++ + L+ ++ S++ + + G + +T IR + + + + Sbjct: 12 VNAFLTHLASERRLSPHTVSSYQRDLVEARKVLGTQPWDTLTVHDIRSLAATLHRKGKSG 71 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 + + L+++R F++ +R+ NP + + PK + + + + S Sbjct: 72 KTIQRMLSTLRTFFRYLMREGLARDNPAMDIRAPKSGKRLPKALDADQVSHLLDAGTHSS 131 Query: 191 -----QPRLAFEFLLYSGLR---------CSDSCRAGVQHLQNNIFSIKTQKTGTI-ITV 235 + + E L GLR S R G + + G +T Sbjct: 132 EPLALRDQAMMELLYACGLRLAELLSLNLDSIDLRDGQLLVTGKGNKTRQLPVGKPALTA 191 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFS 293 ++ L + + FI+ + ++++ + K A + G++ H +R Sbjct: 192 VRRWLKVRPLLIKSGEQTALFISKNGRRLSPSSVQQRLKRHALERGLDDHLHPHKLRHSF 251 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG---IKNSRRISSVVDSDD 347 AT ++ + G + + YT D L R D D+ Sbjct: 252 ATHLLESSGDLRAVQELLGHADLATTQVYTH-LDFQHLAQVYDGAHPRAQRRKDEDE 307 >gi|283798528|ref|ZP_06347681.1| integrase/recombinase XerD [Clostridium sp. M62/1] gi|291073790|gb|EFE11154.1| integrase/recombinase XerD [Clostridium sp. M62/1] gi|295090134|emb|CBK76241.1| tyrosine recombinase XerD subunit [Clostridium cf. saccharolyticum K10] Length = 287 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 44/268 (16%), Positives = 92/268 (34%), Gaps = 24/268 (8%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGV---ESRKHTPS 131 Y + ++ N+ +S+ Q D + +T + S + E + Sbjct: 11 YLRDV--KKMSQNTILSYRRDLLQFASYMADRGVAEAGKVTKTSLDSYILFLEREGKAAA 68 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWS 187 + + L S++ F + + Y+ NP + PK + + + E++ + + Sbjct: 69 TISRMLASIKAFFHYESTEGYIKRNPAEMIRAPKIEKKAPSILSVEEVTRLLNQPGGRTP 128 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247 + + + E L +G+R S+ + H+ I I +G T+ K L Sbjct: 129 KEIRDKAMLELLYATGIRVSELMNLNLHHINMTIGFITCSDSGRERTIPFGRVAKKALDD 188 Query: 248 T----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSAT 295 + F+N +M+ F K KAG+ + + H +R A Sbjct: 189 YLKNSRPELTKKKESDWLFVNCSGGQMSRQGFWKIIKYYGEKAGIQTDITPHTLRHSFAA 248 Query: 296 ISADAGATAHELMATYGWKTVDQAETYT 323 +GA + G + + Y Sbjct: 249 HLISSGADMKAVQQILGHSDMATTQMYA 276 >gi|126464049|ref|YP_001045162.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029] gi|126105860|gb|ABN78390.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029] Length = 360 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 69/350 (19%), Positives = 124/350 (35%), Gaps = 29/350 (8%) Query: 9 PFVTKERTR--HGKI-IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65 V K + R GK+ ++Y+ G +I P F P Sbjct: 2 KGVHKVKRRLVSGKVAVHYYAWRGGPKIE-AEPDSPEF-------RAAYDAAHAARQKPV 53 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----S 121 TL+ LI+ Y+++ + LA ++ + + QI + GD + + +R Sbjct: 54 HHDGTLQALITAYQQTPAFTVLAPTTKAGYIRHIRQIEAEFGDMPLKALADPRVRGEFLD 113 Query: 122 GVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + + SA + + ++ WA + + NPC R + WT+ + Sbjct: 114 WRDRLGQKSKRSADYAFSVLALILAWAYDRRKIPSNPCEKPGRLYAGSRADDIWTESQIA 173 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 F + RL F +++G R +D + + +K KTG + + + Sbjct: 174 AFLDKAPK--PVRLPFLLAIWTGQRQADILKLTWSAYDGQVIRLKQSKTGRHMVIPVARQ 231 Query: 241 FMKLLA--MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATIS 297 + L T + Q + F F AG+ + H +R + T Sbjct: 232 LREALDAAKARRKTLTICETSRGQPWTSDGFKTSFGKAQAAAGIEGVTFHDLRGTAVTFL 291 Query: 298 ADAGATAHELMATYGWKTVDQAE-----TYTKGADRIRLGIKNSRRISSV 342 A AG + E+ A G ++ AE Y G DR RLG ++ Sbjct: 292 ALAGCSVPEIAALTGH-SLKDAEAILSKHYL-GRDR-RLGESAVAKLERH 338 >gi|294674930|ref|YP_003575546.1| tyrosine recombinase XerD [Prevotella ruminicola 23] gi|294472077|gb|ADE81466.1| tyrosine recombinase XerD [Prevotella ruminicola 23] Length = 303 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 48/274 (17%), Positives = 95/274 (34%), Gaps = 23/274 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKH-- 128 ++ Y + +++ N+ +++ +++ +T + S Sbjct: 7 IVKAYVRYLKLQRNMSGNTLDAYQRDLRKLLDYLEHEQLAISDVTLADLEHFSASLHDIG 66 Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 P S + L+ +R FK+ Y +P +E P+ T +++ + + Sbjct: 67 IHPRSQCRILSGIRSFFKFVQLDGYRDDDPTELLESPQIGDHLPEVLTTQEVDRLEESID 126 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFM 242 EG + R E L GLR S+ + L + ++ K V + + Sbjct: 127 LSKWEGHRNRAIIEVLFSCGLRVSELVNLKLSDLYLDEEYVRVLGKGSKERLVPISPKAI 186 Query: 243 KLLAMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290 + L + I N + T I KA+A +A + K+ H +R Sbjct: 187 QELRFWFNVRNLMKIKPGEEDYVFLNRRGAHLTRTMILIMIKAQAKEARIQKTISPHTLR 246 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324 AT + GA + A G + + E YT Sbjct: 247 HSFATALLEGGADLRFIQALLGHEDIGTTEIYTH 280 >gi|149927220|ref|ZP_01915477.1| Tyrosine recombinase XerD [Limnobacter sp. MED105] gi|149824159|gb|EDM83380.1| Tyrosine recombinase XerD [Limnobacter sp. MED105] Length = 299 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 47/277 (16%), Positives = 89/277 (32%), Gaps = 22/277 (7%) Query: 72 KWLISEYRKSAHWG-SLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVESR 126 LI E+ + LA + ++ + + + + + Sbjct: 5 ADLIDEFCTTLWLEEGLAKATLQAYRGDLQQLGNWLDEHFAENLLQASNEHIRNHVHDLL 64 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + PSS + L+S + + W NPC ++ KR + +++ + S Sbjct: 65 ELKPSSLNRKLSSYKRFYLWLNTTRQREDNPCSQLQSAKRGLRIPKTLSEKQVLDLLSAP 124 Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGF 241 G + + EF+ SGLR S+ ++ + N K V + + Sbjct: 125 DLSNAAGQRDKAMLEFMYASGLRVSELVNMPLRAVDLNVGAVKVLGKGKKERLVPMGEPA 184 Query: 242 MKLLAMTPIG----------KETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGV 289 + + + F+ + M F K A AG+N S H + Sbjct: 185 RLAIQLYLQQARGELLKGKTSDFLFVTHFGTPMTRQGFWKNTKRLALIAGINTTVSPHVL 244 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 R AT + GA + G + + YT A Sbjct: 245 RHAFATHLINHGADLRVVQLLLGHADIGTTQIYTHVA 281 >gi|86133261|ref|ZP_01051843.1| phage integrase family protein [Polaribacter sp. MED152] gi|85820124|gb|EAQ41271.1| phage integrase family protein [Polaribacter sp. MED152] Length = 385 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 46/272 (16%), Positives = 97/272 (35%), Gaps = 17/272 (6%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK----HIRSGVESRK 127 K L++ + + ++ ++ + I + + I R Sbjct: 91 KKLLNGFYLYMKGKRYSESTLKTYTFFIADFINFHSKKACSDLDNRDVELFIEKVFIERN 150 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 ++ SS QF++++++ + + I PK+ + ++E++ + S + Sbjct: 151 YSVSSQRQFISALKIFTNYYPSTKINDIELTR----PKKSKKLPSVLSQEEVLRIISVTT 206 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 + R L GLR S+ ++ H++ +K+ K V L + FM LL Sbjct: 207 -NLKHRAIIALLYSCGLRISELINLKLKDFHIERKQLIVKSGKGRKDRYVSLAESFMPLL 265 Query: 246 AMTPIGKETFFIN---NDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 E + +K +A+ + K KAG+ + + H +R AT + Sbjct: 266 KNYYYSYEPKEFFVEGMNGEKYSASSVRAFLKKSCKKAGIQRAVTPHTLRHSYATHLLEN 325 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLG 332 G + + G + YT R L Sbjct: 326 GVDIRYIQSLLGHSRPETTMIYTH-VKRKDLM 356 >gi|228992559|ref|ZP_04152486.1| Tyrosine recombinase xerC [Bacillus pseudomycoides DSM 12442] gi|228767193|gb|EEM15829.1| Tyrosine recombinase xerC [Bacillus pseudomycoides DSM 12442] Length = 302 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 44/287 (15%), Positives = 97/287 (33%), Gaps = 27/287 (9%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126 +K L+ + + + + S+++ + ++ G + +T +R + + Sbjct: 6 VKKLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYVDVRLYLTTL 65 Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----M 179 S + ++S+R L+++ +R+ Y NP PK++ + E+ Sbjct: 66 HDEKLARKSVARKVSSLRSLYRFLMREGYREDNPFALASLPKKELSIPKFLYVEELEKLF 125 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238 + G + + E + +G+R S+ + + ++ +I T K V Sbjct: 126 EVSDVKTPLGQRDQALLELMYATGIRVSECVSLQLTDIDFSVGTILVTGKGKKQRYVPFG 185 Query: 239 DGFMKLLAMTPI------------GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284 L + F+N + + KA + Sbjct: 186 SYAQDALITYIENGRKQLAKKTEEHSQMVFLNAKGKPLTDRGVRYILNELIKKASLTMRI 245 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 S H +R AT D GA + G + + + YT + RL Sbjct: 246 SPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTH-VSKERL 291 >gi|114570821|ref|YP_757501.1| phage integrase family protein [Maricaulis maris MCS10] gi|114341283|gb|ABI66563.1| phage integrase family protein [Maricaulis maris MCS10] Length = 321 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 47/304 (15%), Positives = 106/304 (34%), Gaps = 31/304 (10%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT---KHIRSGVESRKHT 129 LI + + N+ ++ + + + TT +H+ + + + Sbjct: 15 LIELFLDMMAAERGASPNTLDAYRRDLVDVAARLSSRNLEAATTPDLEHVLASMAADGLA 74 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--- 186 S+A + L++++ +++ + NP + PK+ + T++D+ + Sbjct: 75 ASTAARRLSAIKRFYRFLLSDGVREDNPATPLRAPKQGRPLPKILTEDDVDRLFDAASGL 134 Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCR-AGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 G + R E L GLR ++ ++ T K G V L + ++ Sbjct: 135 SGPAGLRTRALMELLYAGGLRVTELVSLPLGAFVRAERCIQITGKGGRERLVPLTEAALE 194 Query: 244 LLAMTPIGKETFFINNDKQ-----------------KMNATQFSIWFKAKATKAGVN--- 283 +A + +E + + + +F+ AG++ Sbjct: 195 AVAAYKVVREAHLPVDRTKSGKAARYLFPSRTAKTGHLTRERFAQILSELTLAAGLDPAK 254 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSRRISSV 342 S H +R AT GA + G V + YT D R++ ++++ ++ Sbjct: 255 VSPHVLRHAFATHLLARGADLRSVQILLGHADVSTTQIYTHVLDERLKSLVQSAHPLARR 314 Query: 343 VDSD 346 D D Sbjct: 315 TDDD 318 >gi|218235700|ref|YP_002368632.1| site-specific tyrosine recombinase XerC [Bacillus cereus B4264] gi|229111302|ref|ZP_04240855.1| Tyrosine recombinase xerC [Bacillus cereus Rock1-15] gi|229129107|ref|ZP_04258080.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-Cer4] gi|229146402|ref|ZP_04274773.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-ST24] gi|229152030|ref|ZP_04280225.1| Tyrosine recombinase xerC [Bacillus cereus m1550] gi|296504326|ref|YP_003666026.1| site-specific tyrosine recombinase [Bacillus thuringiensis BMB171] gi|218163657|gb|ACK63649.1| tyrosine recombinase XerC [Bacillus cereus B4264] gi|228631379|gb|EEK88013.1| Tyrosine recombinase xerC [Bacillus cereus m1550] gi|228637035|gb|EEK93494.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-ST24] gi|228654344|gb|EEL10209.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-Cer4] gi|228672078|gb|EEL27369.1| Tyrosine recombinase xerC [Bacillus cereus Rock1-15] gi|296325378|gb|ADH08306.1| site-specific tyrosine recombinase [Bacillus thuringiensis BMB171] Length = 299 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 42/287 (14%), Positives = 95/287 (33%), Gaps = 27/287 (9%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126 +K L+ + + + + S+++ + ++ G + +T +R + + Sbjct: 3 VKKLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYADVRLYLTTL 62 Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----M 179 S + ++S+R L+++ +R+ Y NP PK++ + E+ Sbjct: 63 HDEKLARKSVARKVSSLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELF 122 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238 + + G + + E + +G+R S+ + + + +I K + Sbjct: 123 EVSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFG 182 Query: 239 DGFMKLLAMTPIG------------KETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284 L F+N + + KA + Sbjct: 183 SYAQDSLITYIENGRKQLVNKTDEDSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRI 242 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 S H +R AT D GA + G + + + YT + RL Sbjct: 243 SPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTH-VSKERL 288 >gi|148267742|ref|YP_001246685.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus JH9] gi|150393800|ref|YP_001316475.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus JH1] gi|189030083|sp|A6U170|XERC_STAA2 RecName: Full=Tyrosine recombinase xerC gi|189030084|sp|A5ISD6|XERC_STAA9 RecName: Full=Tyrosine recombinase xerC gi|147740811|gb|ABQ49109.1| tyrosine recombinase XerC subunit [Staphylococcus aureus subsp. aureus JH9] gi|149946252|gb|ABR52188.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus JH1] Length = 298 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 36/276 (13%), Positives = 88/276 (31%), Gaps = 23/276 (8%) Query: 76 SEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH------ 128 + + + + ++ S++ Q + ++ T R + Sbjct: 6 EAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLEQEHL-QLKTFEYRDARNYLSYLYSNHL 64 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +S + ++++R +++ + + INP + + PK++ + + +E+M+ E Sbjct: 65 KRTSVSRKISTLRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEALFKTVEE 124 Query: 189 GS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMK 243 + + R+ E L +G+R S+ Q + K V + Sbjct: 125 DTSKNLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVLGKGSKERFVPFGAYCRQ 184 Query: 244 LLAMTPIGKETFFINNDKQ--------KMNATQFSIWFKAKATK-AGV-NKSAHGVRKFS 293 + + N + + AGV H +R Sbjct: 185 SIENYLEHFKPIQSCNHDFLILNMKGEAITERGVRYVLNDIVKRTAGVSEIHPHKLRHTF 244 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + GA + + G + YT +++ Sbjct: 245 ATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQ 280 >gi|225573518|ref|ZP_03782273.1| hypothetical protein RUMHYD_01711 [Blautia hydrogenotrophica DSM 10507] gi|225039115|gb|EEG49361.1| hypothetical protein RUMHYD_01711 [Blautia hydrogenotrophica DSM 10507] Length = 294 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 43/272 (15%), Positives = 90/272 (33%), Gaps = 23/272 (8%) Query: 74 LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGD------FDYRKITTKHIRSGVESR 126 I E+ H + N+ IS+E +++ + S + Sbjct: 4 AIREFITYLHNIKQTSNNTEISYERDLNKMAAYLERQGVYNPLKVTETDLNGYLSYLRRN 63 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 K S+ + + S+R +++ R + +P +++ PK + + T E++ Sbjct: 64 KFAASTISRSVASIRAFYQFLFRAHQIVQDPSENLKPPKVEKKTPEILTVEEVDLLLRQP 123 Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242 S + + + E L +G+R S+ V + N+ + + + + Sbjct: 124 SLDTAKGLRDKAMLELLYATGMRVSELMHLKVSDVNLNLGYVDCSEGARERVIPFGNVCK 183 Query: 243 KLLAMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290 + L F N + M+ F K A+ AG+ + + H +R Sbjct: 184 RALVQYLEQGREAFQRKGETDILFPNCSGKMMSRQGFWKVLKGYASAAGITTDITPHTLR 243 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETY 322 A GA L G + + Y Sbjct: 244 HSFAAHMLQNGADIKSLQEMLGHSDISTTQMY 275 >gi|212550782|ref|YP_002309099.1| site-specific recombinase XerC [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212549020|dbj|BAG83688.1| site-specific recombinase XerC [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 299 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 42/270 (15%), Positives = 89/270 (32%), Gaps = 23/270 (8%) Query: 78 YRKSAHW-GSLAVNSRISFESYF---DQIIRKSGDFDYRKITTKHIRSGV---ESRKHTP 130 + + + +V + ++ ++ + S FD R IT+ IR + R ++P Sbjct: 13 FLCHLRYERNYSVRTLKTYCDDLVQFERFVFCSEGFDMRTITSSVIREWIVFLMDRNYSP 72 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-----SF 185 S + L+++R F++ R + NP + + +M Sbjct: 73 RSVNRKLSTLRSFFRYLYRNGQIESNPVKGIVGVRTGRPLPYFVRDREMNTLLLDLSKGE 132 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKL 244 E + R E +G+RCS+ + + I+ + ++ Sbjct: 133 GFEDERDRTILEVFYSTGIRCSELVGLNDEDIDFESCLIRVTGKGNKQRLIPFSKTLEEI 192 Query: 245 LAMTPIGKETFFINNDKQKM--------NATQFSIWFKAKATKAG--VNKSAHGVRKFSA 294 L+ ++ + K N K + + +S H +R A Sbjct: 193 LSYYKTIRDETIWDVSKAFFVREDGRSLNYNIVYRIVKKRLSDIPNLPKRSPHVLRHTFA 252 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324 T + GA + + G ++ E YT Sbjct: 253 TSMLNNGANLNAVKELLGHSSLASTEIYTH 282 >gi|67459687|ref|YP_247311.1| site-specific tyrosine recombinase XerC [Rickettsia felis URRWXCal2] gi|75535922|sp|Q4UJZ3|XERC_RICFE RecName: Full=Tyrosine recombinase xerC gi|67005220|gb|AAY62146.1| Tyrosine recombinase XerC [Rickettsia felis URRWXCal2] Length = 305 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 46/287 (16%), Positives = 100/287 (34%), Gaps = 28/287 (9%) Query: 68 PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRS 121 T+++ LI +++K + + ++ IS+ + + I T IR Sbjct: 3 DTSIQELIDKWQKYLDLQRNYSNHTVISYNNDLKHFLEFMNYYNSELVTINHIKTADIRL 62 Query: 122 GVESRK------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 T SS + L++++ +++ + + + S++ PK+ + + Sbjct: 63 IRSWLAKRNCDNFTTSSISRGLSAVKNFYRFLEKTTQLNSHIIFSIKSPKKTKLLPKALS 122 Query: 176 KEDMQQFKSFW-------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228 ++D+ + + + SGLR S++ HLQN F K Sbjct: 123 EDDVVISLEHIEEYGNVKWVELRNKALLVLIYASGLRISEALSITKLHLQNLEFIRIIGK 182 Query: 229 TGTIITVEL-------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 + ++++L E F +K+ F+ G Sbjct: 183 GSKERIIPWLPIAKNLITQYLEILPYKLGDNEPIFRGKQGKKLQPPVFNRELIKLKHFYG 242 Query: 282 VN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 + +AH R A+ + GA + G K++ + YTK + Sbjct: 243 LPQHLTAHSFRHSFASHLLEHGADLRSIQELLGHKSLSTTQNYTKTS 289 >gi|21282864|ref|NP_645952.1| hypothetical protein MW1135 [Staphylococcus aureus subsp. aureus MW2] gi|49486091|ref|YP_043312.1| putative integrase/recombinase [Staphylococcus aureus subsp. aureus MSSA476] gi|297208102|ref|ZP_06924533.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300912183|ref|ZP_07129626.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus TCH70] gi|34222912|sp|Q8NWZ8|XERC_STAAW RecName: Full=Tyrosine recombinase xerC gi|81649416|sp|Q6G9W1|XERC_STAAS RecName: Full=Tyrosine recombinase xerC gi|21204303|dbj|BAB95000.1| xerC [Staphylococcus aureus subsp. aureus MW2] gi|49244534|emb|CAG42963.1| putative integrase/recombinase [Staphylococcus aureus subsp. aureus MSSA476] gi|296887345|gb|EFH26247.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300886429|gb|EFK81631.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus TCH70] Length = 298 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 36/276 (13%), Positives = 88/276 (31%), Gaps = 23/276 (8%) Query: 76 SEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH------ 128 + + + + ++ S++ Q + ++ T R + Sbjct: 6 EAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLEQEHL-QLKTFEYRDARNYLSYLYSNHL 64 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +S + ++++R +++ + + INP + + PK++ + + +E+M+ E Sbjct: 65 KRTSVSRKISTLRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEALFKTVEE 124 Query: 189 GS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMK 243 + + R+ E L +G+R S+ Q + K V + Sbjct: 125 DTSKSLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVLGKGSKERFVPFGAYCRQ 184 Query: 244 LLAMTPIGKETFFINNDKQ--------KMNATQFSIWFKAKATK-AGV-NKSAHGVRKFS 293 + + N + + AGV H +R Sbjct: 185 SIENYLEHFKPIQSCNHDFLIVNMKGEAITERGVRYVLNDIVKRTAGVSEIHPHKLRHTF 244 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + GA + + G + YT +++ Sbjct: 245 ATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQ 280 >gi|229104393|ref|ZP_04235062.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-28] gi|228679091|gb|EEL33299.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-28] Length = 299 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 43/287 (14%), Positives = 95/287 (33%), Gaps = 27/287 (9%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126 +K L+ + + + + S+++ + +R G + +T +R + + Sbjct: 3 VKKLLQLFVGYLQIERNYSKYTIASYQNDLEHFVRFMEREGISSFLDVTYADVRLYLTTL 62 Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----M 179 S + ++S+R L+++ +R+ Y NP PK++ + E+ Sbjct: 63 HDEKLARKSVARKVSSLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELF 122 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238 + + G + + E + +G+R S+ + + + +I K + Sbjct: 123 EVSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFG 182 Query: 239 DGFMKLLAMTPI------------GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284 L F+N + + KA + Sbjct: 183 SYAQDALITYMENGRKQLANKTEEQSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRI 242 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 S H +R AT D GA + G + + + YT + RL Sbjct: 243 SPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTH-VSKERL 288 >gi|299142044|ref|ZP_07035178.1| tyrosine recombinase XerD [Prevotella oris C735] gi|298576506|gb|EFI48378.1| tyrosine recombinase XerD [Prevotella oris C735] Length = 307 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 46/274 (16%), Positives = 93/274 (33%), Gaps = 23/274 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKI-----TTKHIRSGVESRK 127 ++ Y + + + N+ ++ ++ +H + + + Sbjct: 11 VLKSYLRYLKLERNYSQNTLDAYSHDITWLMDYCKREGLEMTALQLEDLQHFAATLHEFQ 70 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 P S + L+ +R +++ + Y+ +P +E P + ++ + Sbjct: 71 IGPRSQSRILSGIRSFYRFLLLDGYIETDPTELLESPALGQHLPEVLSTAEVDMLEQSID 130 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFM 242 EG + R E L GLR S+ + L + I+ K V + + Sbjct: 131 LSKPEGQRNRAIIEVLFSCGLRVSELVNLKLSQLYLDDGFIRVLGKGSKERLVPISPRAI 190 Query: 243 KLLAMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290 K L + + I N + T I K +A +AG+ K+ H +R Sbjct: 191 KELQLWFTDRVHLNIKPGEEDFVFLNRRGHHLTRTMILIMIKRQAEEAGIKKTISPHTLR 250 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324 AT GA + A G +++ E YT Sbjct: 251 HSFATALLQGGADLRAIQAMLGHESIGTTEIYTH 284 >gi|260425750|ref|ZP_05779730.1| site-specific recombinase, phage integrase family [Citreicella sp. SE45] gi|260423690|gb|EEX16940.1| site-specific recombinase, phage integrase family [Citreicella sp. SE45] Length = 308 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 42/289 (14%), Positives = 88/289 (30%), Gaps = 29/289 (10%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSG 122 + + + SA A N+ ++ + + I G ++TT +R+ Sbjct: 10 REALENWLASARALKGAAENTITAYRADVLEFIVFLTTHHAEPQGLKPLARVTTPDMRAF 69 Query: 123 VESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW----- 174 + + P S + L++++ ++W +E + PK + + RP Sbjct: 70 MAHLRGQGAAPRSMARKLSAVKSFYRWLAEREGFEPTAVIMARAPKFQKKLPRPLDESAA 129 Query: 175 --TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 E ++ + G++ L GLR S++ + T K G Sbjct: 130 RAMIETVEMQSADSWIGARDAAVVTLLYGCGLRISEALGLRGRDWPMGESLRITGKGGKE 189 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKM-------NATQFSIWFKAKATKAGVNKS 285 V + + + N + + G+ + Sbjct: 190 RIVPVLPVARDAVGIYLQLCPFEPEPEAPIFRGARGGALNPRLIQKVTEKARLQLGLPAT 249 Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R AT AG + G ++ + YT D + L Sbjct: 250 ATPHAMRHSFATHLLAAGGDLRAIQELLGHASLSTTQAYT-AVDEVHLM 297 >gi|256391647|ref|YP_003113211.1| tyrosine recombinase XerD [Catenulispora acidiphila DSM 44928] gi|256357873|gb|ACU71370.1| tyrosine recombinase XerD [Catenulispora acidiphila DSM 44928] Length = 306 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 46/271 (16%), Positives = 96/271 (35%), Gaps = 25/271 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFD---YRKITTKHIRSGVESRKHTP-SSAIQFLTSM 140 L+ N+ ++ + D + I + + + S + SSA + ++++ Sbjct: 23 RGLSANTLAAYRRDLSRYRVFLDTRDRANFSDIDRADVSAFLASLQDGAASSAARTMSAV 82 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG----SQPRLAF 196 R L ++AV + +V ++ V P+ + +D+++ + + R Sbjct: 83 RGLHRFAVAEGWVGVDVSDDVAPPQVPMRLPKALPLDDIERLLAATEIDEPMALRDRALL 142 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPIGKETF 255 EFL +G R S++ V + ++ K G V + + + + Sbjct: 143 EFLYSTGARVSEAVALDVDDIDREDRTVVLDGKGGKQRLVPVGSYACRAVDDYLVRLRPE 202 Query: 256 -------------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300 F+N ++ A A + G+ S H +R AT D Sbjct: 203 LTRKARSGNGGALFLNARGGRLTRQGAWTVLGAVAERVGLAGRVSPHTLRHSFATHLLDG 262 Query: 301 GATAHELMATYGWKTVDQAETYTKG-ADRIR 330 GA + G + + YT+ DR+R Sbjct: 263 GADIRTVQELLGHSSATTTQIYTRVTVDRLR 293 >gi|160883082|ref|ZP_02064085.1| hypothetical protein BACOVA_01050 [Bacteroides ovatus ATCC 8483] gi|156111554|gb|EDO13299.1| hypothetical protein BACOVA_01050 [Bacteroides ovatus ATCC 8483] Length = 293 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 46/276 (16%), Positives = 98/276 (35%), Gaps = 24/276 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSGVESRKH 128 LI + + + + + +++ Q+ G F+ ++ + IR + S Sbjct: 2 LIESFLDYLQYERNYSEKTVLAYGEDIKQLQEFAQEEYGKFNPLEVEAELIREWIVSLMD 61 Query: 129 TPSS---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + + L+S+R +K+ +RQ I+P ++ PK K + +M + Sbjct: 62 KGYTSTSVNRKLSSLRTFYKYLLRQGETTIDPLRKIKGPKNKKPLPVFLKENEMNRLLDE 121 Query: 186 W-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 +G + RL E +G+R S+ + + + +K + Sbjct: 122 TDFGEGFKGCRDRLIIEVFYATGMRLSELIGLDNKDVDFSASLLKVTGKRNKQRLIPFGD 181 Query: 241 FMKLLAMTPIGKET---------FFINNDKQKMNATQFSIWFKA-KATKAGVNK-SAHGV 289 ++ L + I FFI + +++ K + A + K S H + Sbjct: 182 ELQELMLEYINVRNETIPERSEAFFIRENGERLYKNLVYNLVKRNLSKVATLKKKSPHVL 241 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 R AT + A + G +++ E YT Sbjct: 242 RHTFATTMLNNEAELGVVKELLGHESITTTEIYTHA 277 >gi|15924242|ref|NP_371776.1| site-specific recombinase XerC-like protein [Staphylococcus aureus subsp. aureus Mu50] gi|15926835|ref|NP_374368.1| hypothetical protein SA1095 [Staphylococcus aureus subsp. aureus N315] gi|156979573|ref|YP_001441832.1| site-specific recombinase XerC homologue [Staphylococcus aureus subsp. aureus Mu3] gi|253315609|ref|ZP_04838822.1| hypothetical protein SauraC_05582 [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255006039|ref|ZP_05144640.2| hypothetical protein SauraM_06200 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795692|ref|ZP_05644671.1| tyrosine recombinase XerC [Staphylococcus aureus A9781] gi|258415916|ref|ZP_05682186.1| conserved hypothetical protein [Staphylococcus aureus A9763] gi|258421678|ref|ZP_05684602.1| tyrosine recombinase XerC [Staphylococcus aureus A9719] gi|258434834|ref|ZP_05688908.1| xerC protein [Staphylococcus aureus A9299] gi|258444590|ref|ZP_05692919.1| xerC protein [Staphylococcus aureus A8115] gi|258447577|ref|ZP_05695721.1| tyrosine recombinase xerC [Staphylococcus aureus A6300] gi|258449419|ref|ZP_05697522.1| tyrosine recombinase xerC [Staphylococcus aureus A6224] gi|258454798|ref|ZP_05702762.1| tyrosine recombinase XerC [Staphylococcus aureus A5937] gi|269202868|ref|YP_003282137.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus ED98] gi|282892740|ref|ZP_06300975.1| tyrosine recombinase XerC [Staphylococcus aureus A8117] gi|282927594|ref|ZP_06335210.1| tyrosine recombinase XerC [Staphylococcus aureus A10102] gi|295406188|ref|ZP_06815995.1| tyrosine recombinase XerC [Staphylococcus aureus A8819] gi|296274810|ref|ZP_06857317.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus MR1] gi|297244416|ref|ZP_06928299.1| tyrosine recombinase XerC [Staphylococcus aureus A8796] gi|54039882|sp|P67631|XERC_STAAN RecName: Full=Tyrosine recombinase xerC gi|54042779|sp|P67630|XERC_STAAM RecName: Full=Tyrosine recombinase xerC gi|166918904|sp|A7X1M7|XERC_STAA1 RecName: Full=Tyrosine recombinase xerC gi|13701052|dbj|BAB42347.1| xerC [Staphylococcus aureus subsp. aureus N315] gi|14247022|dbj|BAB57414.1| site-specific recombinase XerC homologue [Staphylococcus aureus subsp. aureus Mu50] gi|156721708|dbj|BAF78125.1| site-specific recombinase XerC homologue [Staphylococcus aureus subsp. aureus Mu3] gi|257789664|gb|EEV28004.1| tyrosine recombinase XerC [Staphylococcus aureus A9781] gi|257839252|gb|EEV63726.1| conserved hypothetical protein [Staphylococcus aureus A9763] gi|257842364|gb|EEV66789.1| tyrosine recombinase XerC [Staphylococcus aureus A9719] gi|257849195|gb|EEV73177.1| xerC protein [Staphylococcus aureus A9299] gi|257850083|gb|EEV74036.1| xerC protein [Staphylococcus aureus A8115] gi|257853768|gb|EEV76727.1| tyrosine recombinase xerC [Staphylococcus aureus A6300] gi|257857407|gb|EEV80305.1| tyrosine recombinase xerC [Staphylococcus aureus A6224] gi|257863181|gb|EEV85945.1| tyrosine recombinase XerC [Staphylococcus aureus A5937] gi|262075158|gb|ACY11131.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus ED98] gi|282590597|gb|EFB95674.1| tyrosine recombinase XerC [Staphylococcus aureus A10102] gi|282764737|gb|EFC04862.1| tyrosine recombinase XerC [Staphylococcus aureus A8117] gi|285816934|gb|ADC37421.1| Site-specific tyrosine recombinase [Staphylococcus aureus 04-02981] gi|294968776|gb|EFG44798.1| tyrosine recombinase XerC [Staphylococcus aureus A8819] gi|297178446|gb|EFH37692.1| tyrosine recombinase XerC [Staphylococcus aureus A8796] gi|312829646|emb|CBX34488.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315131045|gb|EFT87029.1| hypothetical protein CGSSa03_05869 [Staphylococcus aureus subsp. aureus CGS03] gi|329727078|gb|EGG63534.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus 21172] Length = 298 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 36/276 (13%), Positives = 88/276 (31%), Gaps = 23/276 (8%) Query: 76 SEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH------ 128 + + + + ++ S++ Q + ++ T R + Sbjct: 6 EAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLEQEHL-QLKTFEYRDARNYLSYLYSNHL 64 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +S + ++++R +++ + + INP + + PK++ + + +E+M+ E Sbjct: 65 KRTSVSRKISTLRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEALFKTVEE 124 Query: 189 GS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMK 243 + + R+ E L +G+R S+ Q + K V + Sbjct: 125 DTSKNLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVLGKGSKERFVPFGAYCRQ 184 Query: 244 LLAMTPIGKETFFINNDKQ--------KMNATQFSIWFKAKATK-AGV-NKSAHGVRKFS 293 + + N + + AGV H +R Sbjct: 185 SIENYLEHFKPIQSCNHDFLILNMKGEAITERGVRYVLNDIVKRTAGVSEIHPHKLRHTF 244 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + GA + + G + YT +++ Sbjct: 245 ATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQ 280 >gi|257887688|ref|ZP_05667341.1| phage integrase [Enterococcus faecium 1,141,733] gi|257823742|gb|EEV50674.1| phage integrase [Enterococcus faecium 1,141,733] Length = 301 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 43/283 (15%), Positives = 91/283 (32%), Gaps = 29/283 (10%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFDYRKITTKHIRSGVESR 126 T + Y + ++ ++E + +SGD D K +R + + Sbjct: 5 TWEQKFLRYL--IVERGYSEKTKEAYEEDILHFKHFLEESGDADLLKAEYFTVRVYLSAL 62 Query: 127 K-----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 ++ +S + + S+R +++ +++E + NP V K+ R + + +MQ Sbjct: 63 ADHRPSYSRNSISRKIASLRSFYQYLLKEEVIKENPFSYVHLKKKNLRLPRFFYENEMQA 122 Query: 182 FKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVE 236 + + R E L SG+R S+ V + + + K Sbjct: 123 LFDSVAGDSTLDLRNRALLEVLYGSGIRLSECSNLLVSDIDFDSEVMLIHGKGNKERYAP 182 Query: 237 LPDGFMKLLA------------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN- 283 L L + F+N+ + + T K+ ++ Sbjct: 183 LGSFAQDALQEYFTEGRQVLMTKYHEEHDIVFVNHHGKPITPTGIEYVLNQIIKKSSLDS 242 Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 H +R AT + GA + G + + Y Sbjct: 243 DIHPHMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHV 285 >gi|325860159|ref|ZP_08173284.1| putative tyrosine recombinase XerD [Prevotella denticola CRIS 18C-A] gi|325482246|gb|EGC85254.1| putative tyrosine recombinase XerD [Prevotella denticola CRIS 18C-A] Length = 315 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 47/276 (17%), Positives = 93/276 (33%), Gaps = 23/276 (8%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVE---S 125 K ++ +R+ + N+ ++ D+++R +T + + Sbjct: 8 KDIVGRFRRYLKLEKGCSPNTLDAYLHDVDKLLRYLAGEQVSVTDVTLEQLEHFAASVSD 67 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 S + L+ +R +++ V Y+ +P +E PK+ + ++ + Sbjct: 68 LGIGARSLARILSGVRQFYRFLVLDGYMEADPTELLESPKQPDHLPEVLSTAEVDLLEQA 127 Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDG 240 EG + R E L GLR S+ + L ++ V + Sbjct: 128 VDLTKWEGHRNRAIIEVLFSCGLRVSELTHLKLSDLYREEQFVRVMGKGSKERLVPISPR 187 Query: 241 FMKLLAMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKAGVNKS--AHG 288 + L + I N + T I K A +AG+ K+ H Sbjct: 188 ALDELDCWFADRNVMKIKPGEEDYVFLNRRGHHLTRTMILIMIKRYAVEAGIRKTISPHT 247 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT + GA + A G +++ E YT Sbjct: 248 LRHSFATSLLEGGADLRAIQAMLGHESIGTTEIYTH 283 >gi|260578657|ref|ZP_05846565.1| integrase/recombinase XerD [Corynebacterium jeikeium ATCC 43734] gi|258603154|gb|EEW16423.1| integrase/recombinase XerD [Corynebacterium jeikeium ATCC 43734] Length = 299 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 47/278 (16%), Positives = 95/278 (34%), Gaps = 23/278 (8%) Query: 72 KWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESR 126 + L++ Y + ++V++ +++ D+ + G +++T I + Sbjct: 7 RKLVTAYIRHLKTERDVSVHTLSNYQRDLDRYLVWLGSKALQEVTATDIEDHLVYLRKDL 66 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 SSA + L ++R L +A +A + V P + + + ++ + Sbjct: 67 NLAASSAARGLAAIRGLHSFAHTDGRLAFDVAADVPTPSQGGSIPKALSLAQVEALLNAV 126 Query: 187 SEGS-------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238 G + R E L +G R ++ V L + K G V L Sbjct: 127 PAGDGASQINIRDRALLEMLYSTGARITELLDLDVDDLDREQRVLLVRGKGGKERIVPLG 186 Query: 239 DGFMKLLAMTPIGKETF---------FINNDKQKMNATQFSIWFKAKATKAGVNK-SAHG 288 ++ + + F+NN ++ A AG+ S H Sbjct: 187 RPALQAVERYLVRARPSLNKKGSPALFLNNRGARLGRQSGFKIVSQAAEAAGLEHVSPHS 246 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 +R AT + GA + G +V + YTK + Sbjct: 247 LRHSFATHLLEGGADIRVVQELLGHASVATTQIYTKVS 284 >gi|15838026|ref|NP_298714.1| site-specific tyrosine recombinase XerD [Xylella fastidiosa 9a5c] gi|34223080|sp|Q9PDF4|XERD_XYLFA RecName: Full=Tyrosine recombinase xerD gi|9106440|gb|AAF84234.1|AE003973_2 integrase/recombinase [Xylella fastidiosa 9a5c] Length = 324 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 52/294 (17%), Positives = 96/294 (32%), Gaps = 35/294 (11%) Query: 66 KKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSG 122 + TT+ + + K L+ ++ S+ + + R + +T + Sbjct: 22 EDATTIAHFLDALWIKH----GLSQHTLNSYRRDLEGLARWNNGRAGPLATLTPPALLDY 77 Query: 123 VESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + R ++P S + L+ +R F +AV + NP + P + T+ + Sbjct: 78 LTWRTQQHYSPLSNARLLSVLRTFFSYAVECGWRNDNPSTLLAHPVLPHPLPKALTESQI 137 Query: 180 QQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIIT 234 + + EG + R E + +GLR S+ V L ++ G Sbjct: 138 EALLAAPSIETPEGLRNRAMLELMYAAGLRVSELVTLPVAMLNRRQGVLRIIGKGGKERL 197 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKM-----------------NATQFSIWFKAKA 277 V L + L + + QF W K A Sbjct: 198 VPLGEESQHWLQRYLEQARPSLAADKPIPADSDGDVPLFINTTLKRLSRQQFWRWIKHYA 257 Query: 278 TKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 AG+ S H +R AT + GA L G +++ + YT A + Sbjct: 258 ALAGIAPNKVSPHVLRHSFATHLLNHGADLRALQMLLGHRSISTTQIYTFIARQ 311 >gi|145300550|ref|YP_001143391.1| tyrosine recombinase XerC [Aeromonas salmonicida subsp. salmonicida A449] gi|142853322|gb|ABO91643.1| tyrosine recombinase XerC [Aeromonas salmonicida subsp. salmonicida A449] Length = 322 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 47/302 (15%), Positives = 102/302 (33%), Gaps = 23/302 (7%) Query: 53 GSTPKREYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GD 108 P + + P +L ++ + + L+ ++R ++ES+ + + G Sbjct: 2 AREPAKASAPAAEPLPASLADELAAFIEYLRVERQLSPHTRSNYESHLQAMAAELVRLGV 61 Query: 109 FDYRKITTKHIRSGVESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165 D+ ++ +RS V P S ++++R W VRQ + NP + PK Sbjct: 62 SDWARLEASQVRSLVTRMHKAGLAPRSLSTKISALRSFCDWQVRQGRLTANPARGIVTPK 121 Query: 166 RKTEGIRPWTKEDMQQFKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221 + + ++M Q + + R E + SGLR ++ + ++ + Sbjct: 122 QGRPLPKNLDVDEMYQLLNITDEQDPLAVRDRAIMELMYSSGLRLAELVGLNLGDIKLDD 181 Query: 222 FS-IKTQKTGTIITVELPDGFMKLLAMTPIGKE--------TFFINNDKQKMNATQFSIW 272 T K + + ++ L + F++ KQ+++A Sbjct: 182 RQLKVTGKGSRERVLPMGRMAVEWLHKWLKVRPLLAGDEADALFVSKRKQRLSARSVQER 241 Query: 273 FKAK--ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 + H +R AT ++ + G + + YT D Sbjct: 242 LDGWGNKQALNAHVHPHKLRHSFATHMLESSGDLRAVQELLGHADLSTTQIYTH-LDFQH 300 Query: 331 LG 332 L Sbjct: 301 LA 302 >gi|300781243|ref|ZP_07091097.1| tyrosine recombinase XerD [Corynebacterium genitalium ATCC 33030] gi|300532950|gb|EFK54011.1| tyrosine recombinase XerD [Corynebacterium genitalium ATCC 33030] Length = 298 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 51/279 (18%), Positives = 88/279 (31%), Gaps = 25/279 (8%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRK 127 + L + L+ N+ ++ D+ + G D +T + V + Sbjct: 4 EALGKLWLDHLAVERGLSANTLSNYRRDVDRYVTWLESAGKTDLNSVTASDLGDYVADLR 63 Query: 128 HTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 SSA + L R L K+A + VA + V PK + + E++ Sbjct: 64 RGGLAASSAGRALVVARGLHKFATVEGAVAADVAAGVSPPKTGEKLPDTLSIEEVGLLLD 123 Query: 185 FWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN---IFSIKTQKTGTIITVEL 237 + + + E L +G R S+ V + F T K V + Sbjct: 124 ACPTDTPADLRDKALLEVLYATGARVSEVLGLVVDDVVGLEDGTFIKVTGKGNKQRIVPV 183 Query: 238 PDGFMKLLAMT---------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286 + F+N ++ K A +AGV+K S Sbjct: 184 GSAARDAVEAYLVRGRPALSKGKTHALFLNKRGGALSRQSAWTVIKEAAGRAGVDKHISP 243 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 H +R AT + GA + G +V + YT Sbjct: 244 HTLRHSFATHLLEGGADVRTVQELLGHASVTTTQIYTHV 282 >gi|119385813|ref|YP_916868.1| phage integrase family protein [Paracoccus denitrificans PD1222] gi|119376408|gb|ABL71172.1| phage integrase family protein [Paracoccus denitrificans PD1222] Length = 384 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 49/350 (14%), Positives = 105/350 (30%), Gaps = 21/350 (6%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRR---IRLPYPHESTFIPAYMSAL-----TGSTPKREY 60 P G+ Y + GRR I L T A A+ + Sbjct: 27 PGFGLRVLPSGRKGYVVQYRAGRRSRRISLGPATVLTCEQARNRAISIVAAARNGEDPAA 86 Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHI 119 +K T++ L + + + ++ + + + G IT + Sbjct: 87 ERDAGRKTITVRELAERFDREHIAIRVKASTAGEYRRNLRRFILPALGQLTVTGITRADV 146 Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW----- 174 +H P A + L + +F +A K E + Sbjct: 147 AKFHHDLRHIPYQANRCLEVVSKMFGYAEMWGLRPDGTNPRKHIRKYPEEKRERFLSAAE 206 Query: 175 ---TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 E +++ ++ E + LA L+ +G R ++ H+ +++ + T Sbjct: 207 LRRIGEVLREMETEGIELTSAILAARLLILTGCRLNEIMTLQWDHVDLEGRALRLPDSKT 266 Query: 232 IITVEL-PDGFMKLLAMTPIGKETFFINNDKQKMNA-TQFSIWFKAKATKAGV-NKSAHG 288 + ++LL P K ++ + +++ +AGV + H Sbjct: 267 GAKIVHLGQPVVELLRDAPRIKGNPWVIPGTLPGKRLSDLQPFWQRVRARAGVKDVRIHD 326 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSR 337 +R A+ + AG + G Y A+ +++ Sbjct: 327 LRHTFASTAVAAGQGLPMIGKLLGHTQAQTTARYAHLAAEPVKMAADAVA 376 >gi|75763959|ref|ZP_00743586.1| Integrase/recombinase (XerD/RipX family) [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74488552|gb|EAO52141.1| Integrase/recombinase (XerD/RipX family) [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 302 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 42/287 (14%), Positives = 95/287 (33%), Gaps = 27/287 (9%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126 +K L+ + + + + S+++ + ++ G + +T +R + + Sbjct: 6 VKKLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYADVRLYLTTL 65 Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----M 179 S + ++S+R L+++ +R+ Y NP PK++ + E+ Sbjct: 66 HDEKLARKSVARKVSSLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELF 125 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238 + + G + + E + +G+R S+ + + + +I K + Sbjct: 126 EVSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFG 185 Query: 239 DGFMKLLAMTPIG------------KETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284 L F+N + + KA + Sbjct: 186 SYAQDSLITYIENGRKQLVNKTDEDSRMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRI 245 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 S H +R AT D GA + G + + + YT + RL Sbjct: 246 SPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTH-VSKERL 291 >gi|228954107|ref|ZP_04116136.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229071329|ref|ZP_04204552.1| Tyrosine recombinase xerC [Bacillus cereus F65185] gi|229081086|ref|ZP_04213596.1| Tyrosine recombinase xerC [Bacillus cereus Rock4-2] gi|229192000|ref|ZP_04318970.1| Tyrosine recombinase xerC [Bacillus cereus ATCC 10876] gi|228591551|gb|EEK49400.1| Tyrosine recombinase xerC [Bacillus cereus ATCC 10876] gi|228702130|gb|EEL54606.1| Tyrosine recombinase xerC [Bacillus cereus Rock4-2] gi|228711783|gb|EEL63735.1| Tyrosine recombinase xerC [Bacillus cereus F65185] gi|228805673|gb|EEM52263.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 299 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 42/287 (14%), Positives = 96/287 (33%), Gaps = 27/287 (9%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126 +K L+ + + + + S+++ + ++ G + +T +R + + Sbjct: 3 VKKLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYADVRLYLTTL 62 Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----M 179 S + ++S+R L+++ +R+ Y NP PK++ + E+ Sbjct: 63 HDEKLARKSVARKVSSLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELF 122 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238 + + G + + E + +G+R S+ + + + +I K + Sbjct: 123 EVSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFG 182 Query: 239 DGFMKLLAMTPIG------------KETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284 L F+N + + + KA + Sbjct: 183 SYAQDSLITYIENGRKQLVNKTDEDSHMVFLNAKGKPLTSRGVRYVLNELIKKASLTMRI 242 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 S H +R AT D GA + G + + + YT + RL Sbjct: 243 SPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTH-VSKERL 288 >gi|228922585|ref|ZP_04085885.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228837014|gb|EEM82355.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 299 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 42/287 (14%), Positives = 95/287 (33%), Gaps = 27/287 (9%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126 +K L+ + + + + S+++ + ++ G + +T +R + + Sbjct: 3 VKKLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYADVRLYLTTL 62 Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----M 179 S + ++S+R L+++ +R+ Y NP PK++ + E+ Sbjct: 63 HDEKLARKSVARKVSSLRSLYRFLIREGYRKDNPFALASLPKKELSIPKFLYAEELEELF 122 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238 + + G + + E + +G+R S+ + + + +I K + Sbjct: 123 EVSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFG 182 Query: 239 DGFMKLLAMTPIG------------KETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284 L F+N + + KA + Sbjct: 183 SYAQDSLITYIENGRKQLVNKTDEDSHMVFLNAKGTPLTSRGVRYVLNEIIKKASLTMRI 242 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 S H +R AT D GA + G + + + YT + RL Sbjct: 243 SPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTH-VSKERL 288 >gi|189182982|ref|YP_001936767.1| site-specific tyrosine recombinase XerD [Orientia tsutsugamushi str. Ikeda] gi|189179753|dbj|BAG39533.1| integrase/recombinase XerD [Orientia tsutsugamushi str. Ikeda] Length = 309 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 38/288 (13%), Positives = 101/288 (35%), Gaps = 35/288 (12%) Query: 73 WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRKH 128 + ++ ++ +++ NS ++++ + +T I S ++ Sbjct: 2 DFLEQFLETVLAEKNVSANSLLAYKRDLQDFNDFLKSIQLQSSLAVTNNDIDSFIQHLLG 61 Query: 129 TP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 S + ++++R + + + + V + ++E P+ T+ + + ++++ + Sbjct: 62 KNLSFRSIARKISTLRQYYLFLLTENAVQADLVTNIEVPRYSTKLPKILSIKEIKVLIDY 121 Query: 186 WSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-------TII 233 + + + L +GLR S+ + L+ + + K + Sbjct: 122 CFKDTTAEGIRTLAMICLLYSTGLRVSELVSVKITDLKFDHNTGKIKNHFVILGKGNKER 181 Query: 234 TVELPDGFMKLLAMTPIGKETFFINND-------------KQKMNATQFSIWFKAKATKA 280 V + D +++ ++ F + + M F+I K A A Sbjct: 182 LVIMNDLTGDVISKYLPYRDFFSPFKNAKNSVYLFPSKAKQGYMTRQNFAILLKHAAINA 241 Query: 281 GV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 G+ N S H +R A+ + GA + G + + YT Sbjct: 242 GLSPDNVSPHILRHSFASHLLEGGADLKVIQELLGHVDISSTQIYTHV 289 >gi|72117696|gb|AAZ59959.1| tyrosine recombinase XerD subunit [Ralstonia eutropha JMP134] Length = 327 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 50/320 (15%), Positives = 98/320 (30%), Gaps = 29/320 (9%) Query: 36 PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE-YRKSAHWGSLAVNSRIS 94 P ++ A+ + + + + + L+ N+ + Sbjct: 2 KRPAGASQTTRKPRAVHADAEMVALDAAIAPELDLVSRFCDALWLED----GLSRNTMDA 57 Query: 95 FESYFDQIIRKSGDFD---YRKITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVR 149 + + R I + + +R SS+ + L R ++WA+R Sbjct: 58 YRRDLSMLARWLHQSSNGGLLGIGDTELNAYFLARHPETRASSSNRRLAVFRRFYQWALR 117 Query: 150 QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLR 205 ++ + +PC+ + K+ + ++ ++ G + R E + SGLR Sbjct: 118 EQMIEADPCILLRPAKQPPRVPKTLSEAQVEALLEAPDTTTPLGLRDRTMLELMYASGLR 177 Query: 206 CSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPDGFMKLLAMT----------PIGKE 253 S+ + + N + K V L + Sbjct: 178 VSELTQMKTVEIGLNEGVARVVGGKGDKERLVPFGMQASDWLRRYLGSARPALLAGRACD 237 Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATY 311 F+ + M F K A AG+ S H +R AT + GA + Sbjct: 238 ALFVTQRGEGMTRQAFWHLIKRHARDAGITAPLSPHTLRHAFATHLLNHGADLRVVQLLL 297 Query: 312 GWKTVDQAETYTKGADRIRL 331 G + + YT A R RL Sbjct: 298 GHADISTTQIYTHVA-RERL 316 >gi|300773591|ref|ZP_07083460.1| tyrosine recombinase XerD [Sphingobacterium spiritivorum ATCC 33861] gi|300759762|gb|EFK56589.1| tyrosine recombinase XerD [Sphingobacterium spiritivorum ATCC 33861] Length = 297 Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 41/273 (15%), Positives = 97/273 (35%), Gaps = 25/273 (9%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRS---GVESRKHT 129 Y + LA +S ++ + ++ + +++ H++ + + + Sbjct: 10 FKRYLQLE--RGLAPHSIEAYLNDISKLEVFCTNQQLTVNQLSVDHLQEFLVWLNTFNIS 67 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---- 185 P + + ++ ++ F + + + NP ++ P+ + E++ Q Sbjct: 68 PYTQSRLISGLKAFFGYLQLEGLITKNPAELIQSPRLSRKIPVVLNIEEIDQLIGALDLS 127 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKL 244 ++G + + E L GLR S+ + +L + F K + + +K Sbjct: 128 TTDGMRNKAILEILYGCGLRVSELVNLRISNLFLHIDFIKVEGKGNKERLIPIGQHAIKY 187 Query: 245 LAMTPI-----------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291 L + ++ F+N ++ + K A K G+ K S H R Sbjct: 188 LNIYLNEIRVQQPVKAGFEDYVFLNKRGTSLSRVMIFLIIKDLAAKTGLQKEISPHTFRH 247 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324 A+ + GA + G +++ E YT Sbjct: 248 SFASHLVEGGADLRAVQDMLGHESITTTEIYTH 280 >gi|156935864|ref|YP_001439780.1| site-specific tyrosine recombinase XerC [Cronobacter sakazakii ATCC BAA-894] gi|156534118|gb|ABU78944.1| hypothetical protein ESA_03747 [Cronobacter sakazakii ATCC BAA-894] Length = 301 Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 46/278 (16%), Positives = 92/278 (33%), Gaps = 21/278 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRS---GVESRK 127 I+ + + L+ + +++E I+ +G+ + + +RS Sbjct: 10 IARFLRYLKVERQLSPVTLLNYERQLTAIVGLAGEAGLKSWAQCDAAMVRSLAVRSRRAG 69 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 PSS L+++R F W V Q + NP V PK + +D+ + Sbjct: 70 LGPSSLALRLSALRSFFDWQVSQGELKANPAKGVSTPKTPRHLPKNIDVDDVNRLLDIDL 129 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243 + R E + +GLR S+ HL + K + + + Sbjct: 130 NDPLAVRDRAMLEIMYGAGLRLSELVNIDCNHLDLTSGEVWVMGKGSKERRLPIGRSAVA 189 Query: 244 LLAMTPIGKETFFINN-------DKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 + +E F ++ ++++A F K G+ + H +R A Sbjct: 190 WIEHWLNLRELFGPDDDALFLSKQGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFA 249 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 T ++ + G + + YT D L Sbjct: 250 THMLESSGDLRAVQELLGHANLSTTQIYTH-LDFQHLA 286 >gi|229496921|ref|ZP_04390628.1| tyrosine recombinase XerD [Porphyromonas endodontalis ATCC 35406] gi|229316168|gb|EEN82094.1| tyrosine recombinase XerD [Porphyromonas endodontalis ATCC 35406] Length = 313 Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 44/278 (15%), Positives = 92/278 (33%), Gaps = 23/278 (8%) Query: 74 LISEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR---K 127 L +++ L+ NS ++ ++I + D ++ +H+ + V S Sbjct: 20 LAEAFKRHLQLEQALSPNSISAYLMDLGKLIAYAEDCALPLDQVEYEHLETFVASLYDCG 79 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 S + + ++ +++ +Y+ +P +E PK + ++ E++ Sbjct: 80 IAARSIARIIAGVKSFYRFLYVDQYIQKDPTELLESPKLELHLPTVFSVEEIDHILEAID 139 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFM 242 ++ + R E L GLR S+ C + + F K V + + Sbjct: 140 YSKNDALRNRAIIEVLYSCGLRVSELCHLKLGDVHPEEAFVHVYGKGCKERLVPISPVAL 199 Query: 243 KLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAGVNKS--AHGVR 290 LA ++ +A + AG+ K+ H R Sbjct: 200 DALAQYLASPHRPVPKAGQEDYIFLSRLGKAIARNSVFDLIRALSEAAGITKTVSPHTFR 259 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 AT D GA + G + + E YT + Sbjct: 260 HSFATHLLDGGANLQAIRLMLGHEDISTTEIYTHIDSQ 297 >gi|302332858|gb|ADL23051.1| site-specific recombinase XerC [Staphylococcus aureus subsp. aureus JKD6159] Length = 298 Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 35/276 (12%), Positives = 87/276 (31%), Gaps = 23/276 (8%) Query: 76 SEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH------ 128 + + + + ++ S++ Q + ++ T R + Sbjct: 6 EAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLEQEHL-QLNTFEYRDARNYLSYLYSNHL 64 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +S + ++++R +++ + + INP + + PK++ + + +E+M+ E Sbjct: 65 KRTSVSRKISTLRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEALFKTVEE 124 Query: 189 GS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMK 243 + + R+ E L +G+R S+ Q + K V + Sbjct: 125 DTSKSLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVLGKGSKERFVPFGAYCRQ 184 Query: 244 LLAMTPIGKETFFINNDKQ--------KMNATQFSIWFKAKATK-AGV-NKSAHGVRKFS 293 + + + + AGV H +R Sbjct: 185 SIENYLEHFKPIQSCKHDFLIVNMKGEAITERGVRYVLNDIVKRTAGVSEIHPHKLRHTF 244 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + GA + + G + YT +++ Sbjct: 245 ATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQ 280 >gi|167041136|gb|ABZ05896.1| putative Phage integrase family protein [uncultured marine microorganism HF4000_001A02] Length = 298 Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 52/284 (18%), Positives = 95/284 (33%), Gaps = 27/284 (9%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRKH 128 + +Y +LA NS S+E Q + R +T HIRS V + Sbjct: 4 FLQDYMTMLKVERNLARNSLESYERDLQQYHQYLKTELKLKTIRNVTLGHIRSFVRKLSN 63 Query: 129 TPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 +A + ++S+R + + ++ NP ++ PK + T +++ + Sbjct: 64 RGLAANSIKRAVSSIRTYHNFLSAEGHMKDNPAQLLDTPKIPRKLPNVLTIQEIDKILGI 123 Query: 186 WSEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ------------KT 229 E + FE + GLR ++ C + + I+ Q Sbjct: 124 IPENAPMAQRDLAIFEMMYSCGLRVTELCDFKTSDILWDSEMIRVQGKGSKQRFVPIGPI 183 Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287 + LA F++ + +K+ + K A V K S H Sbjct: 184 ARENLKNYLNHERNTLADKNPNVAEVFLSRNGRKLTRMMIWVLLKKWTESAEVKKEVSPH 243 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +R AT + GA + G + + YT D+ L Sbjct: 244 TLRHSFATHLLEGGADLRSVQEMLGHTDITTTQVYTH-LDKEHL 286 >gi|84685885|ref|ZP_01013781.1| Phage integrase [Maritimibacter alkaliphilus HTCC2654] gi|84665978|gb|EAQ12452.1| Phage integrase [Rhodobacterales bacterium HTCC2654] Length = 379 Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 54/347 (15%), Positives = 104/347 (29%), Gaps = 24/347 (6%) Query: 14 ERTRHGKIIY--YFRKGHGRRIRLPYPHES----TFIPAYMSALTGSTPKRE-----YIN 62 +G Y +R R R ++ +F A A+ + + Sbjct: 29 RVKPNGTKSYLVQYRNRTTGRSRRQTIGQAGPLLSFANARKEAMRLLSEAAQGGDPVESK 88 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRS 121 +K T+ L +Y S + S + II K G ++ + I++ Sbjct: 89 QSARKAETIADLADQYLTLHAKPKKREKSVANDVSMLNGIIIPKLGKQKVAQVGHRDIQA 148 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 S + TP A + L + +F +VR + NP VER + R + E++ + Sbjct: 149 LHNSLRETPYRANRTLALLSKMFALSVRWGWRQDNPAKGVERFPEEK-RYRWLSDEELAR 207 Query: 182 FKSFWSEGSQPRLAFEF--LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP- 238 F + +E R A L +G R + + T Sbjct: 208 FVAELNEHPNQRAANAIRLQLLTGARIGEVLTSKWSDFDLVRGVWVKPSHHTKQKRTEHL 267 Query: 239 ------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRK 291 ++ + + + + +++ T A + + H R Sbjct: 268 PLSNTAISLLQTIQESADLNHPYVFPGRNPGQPLKELKRFWQNVTTAAELSDYRIHDNRH 327 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSR 337 A+ G T + G + Y AD +R + Sbjct: 328 THASHLVSNGLTLPVVGRLLGHTNPLTTQRYAHLADDPLRAAAEIMA 374 >gi|261400435|ref|ZP_05986560.1| tyrosine recombinase XerD [Neisseria lactamica ATCC 23970] gi|313668771|ref|YP_004049055.1| integrase/recombinase [Neisseria lactamica ST-640] gi|269209883|gb|EEZ76338.1| tyrosine recombinase XerD [Neisseria lactamica ATCC 23970] gi|313006233|emb|CBN87695.1| putative integrase/recombinase [Neisseria lactamica 020-06] Length = 291 Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 44/275 (16%), Positives = 94/275 (34%), Gaps = 19/275 (6%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTP 130 LI ++ L+ N+ S+ ++I R+ + + V + Sbjct: 5 LIDRLLETLWLDRRLSRNTLDSYRRDLEKIARRLSLCGKTLADAEETDLAAAVYADGEQR 64 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---- 186 SS + L++ + L+ W + A NP ++ PK T++ + + Sbjct: 65 SSQARALSACKRLYAWMEWEGMRADNPTRLLKPPKTDRNIPPLITEQQVSRLLDAPDTET 124 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL 245 G + + E + +GLR S++ ++ + I K V + + Sbjct: 125 PHGLRDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITALGKGDKQRMVPMGQESAYWV 184 Query: 246 AMTPIG----------KETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294 + F++ K ++ + K A++AG+ + S H +R A Sbjct: 185 GRYYTEARPVLLKGRSCDALFVSQKKTGISRQLAWMIVKEYASQAGIGHISPHSLRHAFA 244 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 T G + G ++ + YT A+ Sbjct: 245 THLVQHGLDLRVVQDMLGHADLNTTQIYTHIANVR 279 >gi|163754938|ref|ZP_02162059.1| site-specific recombinase [Kordia algicida OT-1] gi|161325005|gb|EDP96333.1| site-specific recombinase [Kordia algicida OT-1] Length = 298 Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 47/289 (16%), Positives = 98/289 (33%), Gaps = 28/289 (9%) Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK----ITTKHIRSGV 123 TL+ + + L+ N+ +++ +++IR + I ++ + Sbjct: 4 THTLRD-FQHFLRIE--RGLSENTIVNYSHDIEKLIRFVENNAINHSPLSIDEATVQQFI 60 Query: 124 ESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 S + ++ ++ F + V ++Y NP +E PK + +D+++ Sbjct: 61 YEIAKVLNARSQTRIISGLKSFFNYLVFEDYRKDNPTELIEAPKIGRKLPDTLALKDIEK 120 Query: 182 FKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236 + +EG + + E L GLR S+ + L + I+ V Sbjct: 121 LIAAIDLSKNEGHRNKAIIETLYGCGLRVSELVNLKISDLFFDEGFIRVTGKGDKQRFVP 180 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQ-----------KMNATQFSIWFKAKATKAGVNK- 284 + K + + G+ + ++ K K+G+ K Sbjct: 181 ISSITKKYINLYIQGQRQHVPYIPEFGDTVFLNRRGKQLTRVMIFTIVKRLTEKSGLKKN 240 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 S H R AT + GA + G +++ E Y DR L Sbjct: 241 ISPHTFRHSFATHLLENGADLRAIQLMLGHESITTTEIYMH-VDRSHLA 288 >gi|88813548|ref|ZP_01128781.1| tyrosine recombinase [Nitrococcus mobilis Nb-231] gi|88789177|gb|EAR20311.1| tyrosine recombinase [Nitrococcus mobilis Nb-231] Length = 313 Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 43/267 (16%), Positives = 82/267 (30%), Gaps = 22/267 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 L+ ++ ++ S R G + + P + + L++ Sbjct: 35 RGLSAHTLSAYRSDLVAYARWLERHGTGLLRAGRDGPTAYLAERVRSGVRPRTTARLLST 94 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWSEGSQPRLA 195 +R ++ +R +A +P ++ PK +++++++ G + R Sbjct: 95 LRCFYRLQLRDGRLAEDPTAQLDSPKLDRPLPATLSEQEVEELLAAPDCQNPIGLRDRTM 154 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT------ 248 E +GLR S+ + L + V L D L Sbjct: 155 LEVAYATGLRVSELVSLRLGQLNLRQGMARIIGKADKERLVPLGDEAQAWLEDYLQDARS 214 Query: 249 ----PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302 FI + M F K A AG+ S H +R AT + GA Sbjct: 215 VLLTHPSASVLFITRRGEAMTRQAFWYRIKYYAQVAGISKPLSPHTLRHSFATHLLNHGA 274 Query: 303 TAHELMATYGWKTVDQAETYTKGADRI 329 + G + + YT A + Sbjct: 275 DLRVVQLLLGHSDLTTTQIYTHVARQR 301 >gi|83950126|ref|ZP_00958859.1| tyrosine recombinase [Roseovarius nubinhibens ISM] gi|83838025|gb|EAP77321.1| tyrosine recombinase [Roseovarius nubinhibens ISM] Length = 305 Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 46/289 (15%), Positives = 88/289 (30%), Gaps = 30/289 (10%) Query: 72 KWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSG 122 + + + S + N+ ++ + + G +I+ +RS Sbjct: 7 RDALQGWLDMSRALKGQSDNTIEAYGRDVAEFLTFMSLHLGGEAGIAALGRISVTDMRSW 66 Query: 123 VESRK----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + P S + L++++ +W +E LS+ PK + RP + E Sbjct: 67 MAQMRSGGEVGPRSLARKLSAVKSFIRWLAEREGFDPTAVLSMRSPKFTRKLPRPLSAEH 126 Query: 179 MQ-------QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 + Q S GS+ L GLR S++ + L K G Sbjct: 127 ARDVIETAGQQSSAPWIGSRDMAVITLLYGCGLRISEALSLTGESLPLGEMLRIRGKGGK 186 Query: 232 II-------TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284 + KL F ++ + + G+ Sbjct: 187 ERLVPVIGAARAAVAEYAKLCPYPLDEGAPLFRGARGGPLSPRIVQKVVQQVRMQLGLPA 246 Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 + H +R AT +AG + G ++ + YT D RL Sbjct: 247 SATPHAMRHSFATHLLNAGGDLRTIQELLGHASLSTTQAYT-AVDTARL 294 >gi|223044229|ref|ZP_03614266.1| tyrosine recombinase XerC [Staphylococcus capitis SK14] gi|222442379|gb|EEE48487.1| tyrosine recombinase XerC [Staphylococcus capitis SK14] Length = 296 Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 35/265 (13%), Positives = 90/265 (33%), Gaps = 20/265 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTS 139 + + + S+ Q D K R+ + ++ + +++ Sbjct: 16 RNFSEYTLKSYHDDLIQFNDFLVSEHLDLATFEYKDARNYLSFLYSHNLKRTTVSRKIST 75 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLA 195 +R +++ + Q+ +NP + + PK++ + + +E+M+ + S + R+ Sbjct: 76 LRTFYEYWMTQDESIVNPFVQLVHPKKEQYLPQFFYEEEMEALFQTVKQDSKKGIRDRVI 135 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254 E L +G+R S+ ++ + N K + + + + + Sbjct: 136 IELLYATGIRVSELVNIKIKDIDMNLPGVKVLGKGNKERFIPFGEFCKQSIERYLDEFQP 195 Query: 255 FFINNDKQ--------KMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGATA 304 N+ + + + AGV + H +R AT + GA Sbjct: 196 RKTNDHEYLIVNMNGAPITERGVRYVLNDVVKRTAGVTDIHPHKLRHTFATHLLNQGADL 255 Query: 305 HELMATYGWKTVDQAETYTKGADRI 329 + + G + YT +++ Sbjct: 256 RTVQSLLGHVNLSTTGRYTHVSNQQ 280 >gi|120602477|ref|YP_966877.1| tyrosine recombinase XerD [Desulfovibrio vulgaris DP4] gi|120562706|gb|ABM28450.1| tyrosine recombinase XerD subunit [Desulfovibrio vulgaris DP4] gi|311233936|gb|ADP86790.1| tyrosine recombinase XerD [Desulfovibrio vulgaris RCH1] Length = 321 Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 48/287 (16%), Positives = 94/287 (32%), Gaps = 22/287 (7%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGV---E 124 L ++ + + LA N+ ++ + ++ + ++ + + V Sbjct: 24 LAPVMDRWLEHLLVERGLAENTLAAYSADLIELQVFLEERGCLLAEVDEQTLFMHVVDLR 83 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 R + + L ++R F +AV + + +P L +E PK T+++M + Sbjct: 84 RRGMAGRTLARHLATLRGFFAFAVGEGELEADPALFLENPKLARNLPDVLTRDEMATILA 143 Query: 185 FW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 G + R E + +GLR S+ C ++ G + Sbjct: 144 RPDLSDRLGFRDRTMLELMYAAGLRVSELCALRPLDFDAQAGVVRVFGKGAKERIVPVHH 203 Query: 241 FMKLLAMTPIGKETFFINNDKQKM---------NATQFSIWFKAKATKAGVNK--SAHGV 289 L + + + M + K +AG++K S H Sbjct: 204 VSCALVTAYLRDWRPAFSPVEPAMFLNRSGKGLSRQAVWKVVKRHVAEAGIHKDISPHTF 263 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKN 335 R AT + GA + G + E YT ADR+R Sbjct: 264 RHSFATHLLEGGADLRSVQLLLGHADISATEIYTHVQADRLRRIHNA 310 >gi|38233776|ref|NP_939543.1| site-specific tyrosine recombinase XerD [Corynebacterium diphtheriae NCTC 13129] gi|38200037|emb|CAE49713.1| integrase/recombinase [Corynebacterium diphtheriae] Length = 311 Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 51/299 (17%), Positives = 97/299 (32%), Gaps = 37/299 (12%) Query: 69 TTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVE 124 ++ + ++ ++ N+ ++ ++ R G D I+ + I V+ Sbjct: 2 GSISNIARQWLTHLAVEKGVSDNTLSNYRRDLERYTRWLQVQGITDIENISAQDIERYVQ 61 Query: 125 SRKHTPS----------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 + S SA + L R L ++A+ + V + V P Sbjct: 62 ELRKGDSDTGKKPLAASSAARALIVARGLHRFALLENLVENDVSADVSPPAMGRHLPDTL 121 Query: 175 TKEDMQQFKSFWS-------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFS 223 + E++ + E + EFL +G R S++ V + +N Sbjct: 122 SVEEVNRLIEAIPIDDAASPENLRDCALLEFLYATGARISEAVGLVVDDVAAIVENEGIV 181 Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWFK 274 T K V + D + L + +++ K Sbjct: 182 RITGKGNKQRIVPVGDQCLSALERYVVRSRPAMSKGKSHALFLNKRGGQLSRQSAWQILK 241 Query: 275 AKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIR 330 A +AG+ K S H +R AT + GA + G +V + YT AD +R Sbjct: 242 NSAQRAGIEKDISPHTLRHSFATHLLEGGADVRVVQELLGHSSVTTTQIYTHVTADNLR 300 >gi|146276876|ref|YP_001167035.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025] gi|145555117|gb|ABP69730.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025] Length = 294 Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 58/271 (21%), Positives = 113/271 (41%), Gaps = 7/271 (2%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134 I +Y S + +L+ + + + D + ++G + + ++ +H+ + + P++A Sbjct: 2 IEQYLGSLRFQNLSDSRKRTIRHELDWLREQAGRYHFARLEVRHVEKLMTKKA-GPTAAN 60 Query: 135 QFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193 +M +L+ +A ++ Y NP E+ K +G W +E++++F G++ Sbjct: 61 TVKKNMSMLYNFASKKLGYKGPNPAKFAEKLKTNPDGYHTWNEEEVERFLDRHGPGTKAH 120 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL-----AMT 248 L L +G+ D R G QH++ + + KT + + L + Sbjct: 121 LVILLALNTGMARQDLARVGRQHVKAGRIAYRRGKTSVAADLPILPELAVELEAALANWS 180 Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELM 308 + WF+ + +A V + HG+RK AT ADAGAT E+ Sbjct: 181 DGQMLFITQDKRPVGYTPESLGNWFRDRCAEANVPGALHGLRKAGATRLADAGATEWEIA 240 Query: 309 ATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 + K A Y K A+R RL ++ Sbjct: 241 SYLAHKDTKTAAIYVKKANRARLADSGFAKL 271 >gi|241896013|ref|ZP_04783309.1| integrase/recombinase [Weissella paramesenteroides ATCC 33313] gi|241870744|gb|EER74495.1| integrase/recombinase [Weissella paramesenteroides ATCC 33313] Length = 308 Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats. Identities = 43/283 (15%), Positives = 87/283 (30%), Gaps = 31/283 (10%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD------YRKITTKHIRSGVES 125 K L +Y + ++ ++ ++E + + IT+ +R + Sbjct: 10 KQLFLDYLRIE--RQYSLETQKAYEGDIAEFLTFLSGTQATKSIVLSNITSFDVRVFLSE 67 Query: 126 RKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-----WTKE 177 + + ++S+R +++ + E VA NP + + K R TK Sbjct: 68 LYEKGDGSRTIARKVSSLRSFYRFLINNEMVAENPFVGIVLKKPGQHLPRYFYQKELTKM 127 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236 + G + L E L +G R S+ +Q++ ++ + V Sbjct: 128 FDVVMTDQSALGLRNHLLLEMLYGTGARVSEIANMTLQNVDSHARVVTITGKGNKTRIVP 187 Query: 237 LPDGFMKLLAMT------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-- 282 LA F+N + K K+G+ Sbjct: 188 FGRYAADALAKYLKTGRPVLASKQADTSNKLFLNQRGAPVTTAGIEYILKQIGKKSGLTQ 247 Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 +AH R AT + A + G ++ + YT Sbjct: 248 EVTAHMFRHTFATDLLNNQADLRTVQQLLGHSSLSTTQIYTHV 290 >gi|297571450|ref|YP_003697224.1| tyrosine recombinase XerD [Arcanobacterium haemolyticum DSM 20595] gi|296931797|gb|ADH92605.1| tyrosine recombinase XerD [Arcanobacterium haemolyticum DSM 20595] Length = 310 Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats. Identities = 43/285 (15%), Positives = 88/285 (30%), Gaps = 30/285 (10%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT----------KHI 119 + +Y SL+ N+ ++ + +++ Sbjct: 7 FDRALRDYVAHLGIERSLSDNTLGAYRRDLTHYKEHLELRSVASLAAISPEDAASFVEYL 66 Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 R G SS + +T++R ++ + + + + PK + T +M Sbjct: 67 RDGSAGSVMATSSVARMVTAVRRFHEFLLAEGITTTDASADLHPPKIGMRLPKAITIPEM 126 Query: 180 QQFKSFWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTII 233 +Q + + G ++ R E L +G R S+ V + +I+ K Sbjct: 127 EQLLAVVARGDDAISTRDRALLEILYGTGARISEVVGLTVDDMSCENATIRLFGKGRKER 186 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMN------------ATQFSIWFKAKATKAG 281 + L ++ + T + + +A A +AG Sbjct: 187 ILPLGTYAIEAIRAYLNHGRTELVARSAAPTSSFFLNKRGKTLSRQSAWGVIQAVAEEAG 246 Query: 282 V-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 + + S H R AT GA + G +V + YTK Sbjct: 247 LTDISPHTFRHSFATHLLQGGADVRVVQEMLGHSSVTTTQIYTKV 291 >gi|134299829|ref|YP_001113325.1| tyrosine recombinase XerC [Desulfotomaculum reducens MI-1] gi|134052529|gb|ABO50500.1| tyrosine recombinase XerC subunit [Desulfotomaculum reducens MI-1] Length = 298 Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats. Identities = 41/283 (14%), Positives = 89/283 (31%), Gaps = 27/283 (9%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG---DFDYRKITTKHI--------RS 121 LI + + ++++ +++ + + K+ I + Sbjct: 4 LIDNFVNYLKVQKNFSIHTIEAYQKDLFDGLDYFSIVLNKPIEKMDHASINSSLVREFLA 63 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + + + ++ + L S R FK+ + NP L V PKR+ + +E+ +Q Sbjct: 64 YLRQKNLSRATVARKLASWRAFFKFLYNERLAYTNPMLRVANPKREKRLPKFLYQEETKQ 123 Query: 182 ---FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVEL 237 G + R E L +G+R S+ + ++ I+ V Sbjct: 124 LVEAPDHSPLGIRDRALLELLYATGIRVSELVALDLSNIDLARGYIRVMGKGSKERVVPF 183 Query: 238 PDGFMKLLAMTPIGKETFFINNDK---------QKMNATQFSIWFKAKATKAG--VNKSA 286 + + + D +++ + G +N S Sbjct: 184 HQSAVAAMKEYCRNARPKMVIKDCEAVFVNYKGTRLSDRGIRKIVDKYCQRLGMKLNVSP 243 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 H +R AT D GA + G ++ + YT + Sbjct: 244 HTIRHSFATHLLDNGADLRSVQELLGHVSLSTTQIYTHVTKKK 286 >gi|295399802|ref|ZP_06809783.1| tyrosine recombinase XerC [Geobacillus thermoglucosidasius C56-YS93] gi|312111686|ref|YP_003990002.1| tyrosine recombinase XerC [Geobacillus sp. Y4.1MC1] gi|294978205|gb|EFG53802.1| tyrosine recombinase XerC [Geobacillus thermoglucosidasius C56-YS93] gi|311216787|gb|ADP75391.1| tyrosine recombinase XerC [Geobacillus sp. Y4.1MC1] Length = 300 Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats. Identities = 46/284 (16%), Positives = 97/284 (34%), Gaps = 28/284 (9%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR--- 126 L EY + + + + + ++ +Q G D ++T +R + Sbjct: 9 QLFIEYLQIE--KNYSQYTIVCYQRDIEQFFEFMNEQGIHDLAEVTYSDVRLYLTKLYEQ 66 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 K + S + ++S+R +K+ +R++ V NP PK++ + +++++ Sbjct: 67 KQSSRSVSRKISSLRSFYKFLLREKKVLENPFALAALPKKEQKIPNFLYEQELEILFHVN 126 Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGF 241 + + + E L +G+R S+ C + + + +I K V Sbjct: 127 DVNTAIGQRNQAMLELLYATGVRVSECCHIQLSDIDFSSSTILIHGKGSKQRYVPFGRFA 186 Query: 242 MKLLAMTPIG------------KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287 + L F+N + KA + + S H Sbjct: 187 KEALERYIHHGRRELLQNAKAAHAYLFVNARGNPLTPRGARYILDEMVKKAALTQHVSPH 246 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330 +R AT + GA + G + + YT DR+R Sbjct: 247 VLRHTFATHLLNEGADMRAVQELLGHAHLSSTQVYTHVTKDRLR 290 >gi|229180107|ref|ZP_04307451.1| Tyrosine recombinase xerC [Bacillus cereus 172560W] gi|228603316|gb|EEK60793.1| Tyrosine recombinase xerC [Bacillus cereus 172560W] Length = 299 Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats. Identities = 43/287 (14%), Positives = 96/287 (33%), Gaps = 27/287 (9%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIR---SGV 123 +K L+ + + + + S+++ + ++ G + +T +R + + Sbjct: 3 VKKLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFMKREGISSFLDVTYADVRLYLTML 62 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----M 179 K S + ++S+R L+++ +R+ Y NP PK++ + E+ Sbjct: 63 HDEKLARKSVARKVSSLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELF 122 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238 + + G + + E + +G+R S+ + + + +I K + Sbjct: 123 EVSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFG 182 Query: 239 DGFMKLLAMTPIG------------KETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284 L F+N + + KA + Sbjct: 183 SYAQDSLITYIENGRKQLVNKTDEDSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRI 242 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 S H +R AT D GA + G + + + YT + RL Sbjct: 243 SPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTH-VSKERL 288 >gi|78187478|ref|YP_375521.1| phage/XerD family site-specific recombinase [Chlorobium luteolum DSM 273] gi|78167380|gb|ABB24478.1| site-specific recombinase, phage/XerD family [Chlorobium luteolum DSM 273] Length = 341 Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats. Identities = 50/315 (15%), Positives = 93/315 (29%), Gaps = 49/315 (15%) Query: 65 RKKPTTLKW-LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS------GDFDYRKITT 116 + P TL LI E+ S +L+ + +++ + Q G+FD +T Sbjct: 17 KDNPATLSERLIEEFLLSGRGQKNLSGTTIVAYRTDLRQFFGFLARHSGSGEFDLSLVTP 76 Query: 117 KHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 +R + S + L S++ F++ ++ + +V P+ Sbjct: 77 SLVRMFMGDLLRRGLQQRSIARKLASLKSFFRFLHESRHLTESALSAVSMPRYSRPIPSF 136 Query: 174 WTKED-------------------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214 T+ + + + E L GLR S+ Sbjct: 137 LTEPEASMLFEDVVPMAPHREGFAHGRELQRNFTLLRDAAILEMLYGCGLRISELTGLRQ 196 Query: 215 QHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPIGKETFFIN--------------- 258 L+ +K T K V L + L + FF Sbjct: 197 SDLEMVGGFVKLTGKGRKQRIVPLGAPAVSALKKYFEVRLNFFRISVDGALGESDFVFLT 256 Query: 259 NDKQKMNATQFSIWFKAKATKA--GVNKSAHGVRKFSATISADAGATAHELMATYGWKTV 316 N +++ + K+ H +R AT + GA + G + Sbjct: 257 NKGKQIYPMLVQRMTRRYLAAVTEQKKKNPHTLRHTFATHLLNGGADLQSVSEMLGHSNL 316 Query: 317 DQAETYTKGA-DRIR 330 E YT +R+R Sbjct: 317 STTEIYTHVTFERLR 331 >gi|325960047|ref|YP_004291513.1| tyrosine recombinase xerC [Methanobacterium sp. AL-21] gi|325331479|gb|ADZ10541.1| Tyrosine recombinase xerC [Methanobacterium sp. AL-21] Length = 331 Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats. Identities = 32/274 (11%), Positives = 75/274 (27%), Gaps = 21/274 (7%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRK---ITTKHIRSGVESR 126 +I +Y + + N+ ++ S + + D + R + Sbjct: 41 FPEMIEDYLIELEIRNYSKNTIKTYRSIIINFHKFLKSEKDLYDERLVLRAFKRYIRYLK 100 Query: 127 KHTPSSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF- 182 + S ++ F++ + + + + + Sbjct: 101 REKNVSQNYIYLVTVVVKKFFEFGGIGVLKDVQTPKRTKSLPKSLNENEILSLINAMDHD 160 Query: 183 ------KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITV 235 ++ + ++ L SGLR S+ +I+ + V Sbjct: 161 KDDYLSETSEFLRLRNKVILALLYSSGLRVSELVTLHSDSFDLTDRTIRIRGKGEKDRIV 220 Query: 236 ELPDGFMK----LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 + + L + + F+N + + K A AG+ K + H + Sbjct: 221 LFDEQTKELLEGYLQVRGDHSDYLFVNRSGNHLTPRYIQMMIKDYAKAAGIKKKVTPHIL 280 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323 R AT G + G + + YT Sbjct: 281 RHSFATHLLKNGVDIRAIQQLLGHSNLSTTQIYT 314 >gi|281424791|ref|ZP_06255704.1| tyrosine recombinase XerD [Prevotella oris F0302] gi|281401161|gb|EFB31992.1| tyrosine recombinase XerD [Prevotella oris F0302] Length = 307 Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats. Identities = 44/274 (16%), Positives = 93/274 (33%), Gaps = 23/274 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRK--- 127 ++ Y + + + N+ ++ ++ + + + ++ + Sbjct: 11 VLKSYLRYLKLERNYSQNTLDAYSHDITWLMDYCKREGLEVTALQLEDLQHFAATLHEFQ 70 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 P S + L+ +R +++ + Y+ +P +E P + ++ + Sbjct: 71 IGPRSQSRILSGIRSFYRFLLLDGYIETDPTELLESPALGQHLPEVLSTAEVDMLEQSID 130 Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFM 242 EG + E L GLR S+ + L + I+ K V + + Sbjct: 131 LSKLEGQRNLAIIEVLFSCGLRVSELVNLKLSQLYLDDGFIRVLGKGSKERLVPISPRAI 190 Query: 243 KLLAMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290 K L + + I N + T I K +A +AG+ K+ H +R Sbjct: 191 KELQLWFTDRVHLNIKPGEEDFVFLNRRGHHLTRTMILIMIKRQAEEAGIKKTISPHTLR 250 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324 AT GA + A G +++ E YT Sbjct: 251 HSFATALLQGGADLRAIQAMLGHESIGTTEIYTH 284 >gi|291612618|ref|YP_003522775.1| tyrosine recombinase XerC [Sideroxydans lithotrophicus ES-1] gi|291582730|gb|ADE10388.1| tyrosine recombinase XerC [Sideroxydans lithotrophicus ES-1] Length = 299 Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats. Identities = 38/279 (13%), Positives = 91/279 (32%), Gaps = 20/279 (7%) Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122 + + P TL+ + Y + + + + ++ ++ +G + + HIR Sbjct: 3 AAEQVPATLQGYL-AYLNNE--RNYSPLTAENYARDIRRLFELAGATPLPDLKSHHIRRY 59 Query: 123 VESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + + S + L++ R + + +R NPC+ + PK + ++ Sbjct: 60 IAQLHGSGLGGRSLARVLSAWRGFYGYLMRDHGCKSNPCVGLRAPKAPKTLPHALSPDEA 119 Query: 180 QQ---FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV-QHLQNNIFSIKTQKTGTIITV 235 + ++ + FE L SGLR ++ + T K V Sbjct: 120 VKLVEMLVATPLDARDKAMFELLYSSGLRLAELVSLDPIDMDFADASVRVTGKGNKTRIV 179 Query: 236 ELPDGFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGV--NKS 285 L + L ++ F+ + +++ + + + G+ Sbjct: 180 PLGSHAIDALKAWLAVRDQIAKPGETALFVGKNGARISPRTVQLQLRQRGITQGIASGVH 239 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT + + G ++ + YT Sbjct: 240 PHLLRHSFATHVLQSSGDLRAVQEMLGHASISTTQVYTH 278 >gi|218289606|ref|ZP_03493826.1| tyrosine recombinase XerD [Alicyclobacillus acidocaldarius LAA1] gi|218240256|gb|EED07439.1| tyrosine recombinase XerD [Alicyclobacillus acidocaldarius LAA1] Length = 294 Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats. Identities = 44/274 (16%), Positives = 91/274 (33%), Gaps = 23/274 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTP- 130 I + L+ N+ S+ + R + + K Sbjct: 5 IRTFLDHLRLERGLSENTATSYARDLADFSQYLACEQRTMRDADRTVVLRYLSDLKRRGM 64 Query: 131 --SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 ++ + ++++R F++ +R+ + +P ++E R ++ED+++ Sbjct: 65 KSTTIARRMSALRSFFRYLLREGILQADPTANIEVAAPDEHLPRVVSEEDVERLIGAVRR 124 Query: 189 ----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243 G + R E L +G+R S+ ++ ++ I+ V L + Sbjct: 125 PDAMGLRDRAMLETLYATGVRVSELLALSLEDVELAAGFIRVFGKGKKERVVPLGEIAQD 184 Query: 244 LLAMTPIGKET----------FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRK 291 L + F+N ++M F K A +AGV + H +R Sbjct: 185 ALGLYLRYGRPLLVRDRGESAVFLNRLGRRMTRQGFWNILKGYARQAGVSAEVTPHTLRH 244 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKG 325 AT + GA + G + E YT Sbjct: 245 SFATHLLEGGADLRVVQELLGHADISTTERYTHV 278 >gi|325103648|ref|YP_004273302.1| tyrosine recombinase XerD [Pedobacter saltans DSM 12145] gi|324972496|gb|ADY51480.1| tyrosine recombinase XerD [Pedobacter saltans DSM 12145] Length = 299 Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats. Identities = 48/275 (17%), Positives = 98/275 (35%), Gaps = 27/275 (9%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG----DFDYRKITTKHIR---SGVESRK 127 Y K SL+ NS ++ + D++++ K+ T+ +R + Sbjct: 10 FESYLKLE--RSLSPNSVNAYVNDVDKLVQFLSVQSNPKSLLKVNTQDLRNFIKWINEFG 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS--- 184 S+ + ++ ++ +K+ + ++ + +P +E PK + + T ++ Sbjct: 68 LIASTQSRIISGIKSFYKYLLLEDLIEHDPADIIESPKIRRKLPEVLTVHEINTMLDGFD 127 Query: 185 -FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------- 232 E + + E L SGLR S+ + L + +K G Sbjct: 128 LSKPENIRNKAMLEILYSSGLRVSELTNLKLSDLYRELEFVKVVGKGNKERLVPVGSSAL 187 Query: 233 -ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 + L + ++ F+N K++ + K AT G+ K S H Sbjct: 188 KHLEIYLENIRNKLNIQKGNEDIIFLNKRGSKLSRVMVFMIIKDLATAVGIKKNISPHTF 247 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT + GA + G +++ E YT Sbjct: 248 RHSFATHLIEGGADLRAIQEMLGHESITTTEIYTH 282 >gi|146297662|ref|YP_001181433.1| phage integrase family protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145411238|gb|ABP68242.1| phage integrase family protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 332 Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats. Identities = 44/317 (13%), Positives = 95/317 (29%), Gaps = 27/317 (8%) Query: 51 LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110 L + + T K + + ++ ++ +++ + +R G+ Sbjct: 18 LENVLKILKQYSKVSNSSITFKEFVDYWFEAYASTAVKPSTQKRYRQLLKPALRAIGNKP 77 Query: 111 YRKITTKHIRSGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168 K+ I++ + T S + ++ + +FK A EY++ NP V P + Sbjct: 78 LNKVKPLDIQNIYIALAGTQSNCTILKLHRLLHEIFKHAQMWEYISDNPVKKVVPPTPEK 137 Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228 + W E ++F + A L++G+R + + I K Sbjct: 138 KVFDVWDVETAKRFLEIIKDEPIYYPA-LIALHTGMRAGEILSLKWCDVNFETRVISIVK 196 Query: 229 TGTI---------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKM-----NATQ 268 + V + D K L + + ++ Sbjct: 197 SERKNRGLKTVNLKTKTSKRAVYMNDILYKELKNLYEITKPKPDDFVCPRLPTGNLTVNY 256 Query: 269 FSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA 326 S FK K H +R AT+ G + G + A+TY+ Sbjct: 257 LSRKFKKLVKKHNFPLIRFHDLRHTFATLMLSLGVNTKIVAEILGHSDIKLTADTYSHVL 316 Query: 327 DRIRLGIKNSRRISSVV 343 + + + + Sbjct: 317 PT--MQEEAMKEFVKLW 331 >gi|293570278|ref|ZP_06681347.1| tyrosine recombinase XerC [Enterococcus faecium E980] gi|291609685|gb|EFF38946.1| tyrosine recombinase XerC [Enterococcus faecium E980] Length = 301 Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats. Identities = 43/283 (15%), Positives = 90/283 (31%), Gaps = 29/283 (10%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFDYRKITTKHIRSGVESR 126 T + Y + ++ ++E + +SGD D K +R + + Sbjct: 5 TWEQKFLRYL--IVERGYSEKTKEAYEEDILHFKHFLEESGDADLLKAEYFTVRVYLSAL 62 Query: 127 K-----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 ++ +S + + S+R +++ +++E + NP V K+ R + + +MQ Sbjct: 63 ADHRPSYSRNSISRKIASLRSFYQYLLKEEVIKENPFSYVHLKKKNLRLPRFFYENEMQA 122 Query: 182 FKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVE 236 + R E L SG+R S+ V + + + K Sbjct: 123 LFDSVAGDSPLDLRNRALLEVLYGSGIRLSECSNLLVSDIDFDSEVMLIHGKGNKERYAP 182 Query: 237 LPDGFMKLLA------------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN- 283 L L + F+N+ + + T K+ ++ Sbjct: 183 LGSFAQDALQEYFTEGRQVLMTKYHEEHDIVFVNHHGKPITPTGIEYVLNQMIKKSSLDS 242 Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 H +R AT + GA + G + + Y Sbjct: 243 DIHPHMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHV 285 >gi|288940120|ref|YP_003442360.1| tyrosine recombinase XerD [Allochromatium vinosum DSM 180] gi|288895492|gb|ADC61328.1| tyrosine recombinase XerD [Allochromatium vinosum DSM 180] Length = 297 Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats. Identities = 55/294 (18%), Positives = 95/294 (32%), Gaps = 25/294 (8%) Query: 72 KWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHI--RSGVE 124 + LI + + L+ N+ +++S G + + + Sbjct: 4 RALIEGFADALWMERGLSRNTLTAYQSDLRAFAHWLSQERGRTLIAAERADLLDYLARLA 63 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + P S+ + L+ +R ++ R+ + +P VE PK + ++ D++ + Sbjct: 64 KQGRNPRSSARLLSCLRQFYQHLRRRGLIEADPSARVEAPKLGRPLPKSLSEADVEALLN 123 Query: 185 FWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239 G + R E L SGLR S+ + ++ K G V L + Sbjct: 124 APDTEDARGHRDRTMLEVLYASGLRVSELVNLTPSQVSLTQGVVRILGKGGKERLVPLGE 183 Query: 240 GFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287 L G F M F K A AGV S H Sbjct: 184 DACNWLRDYVRGPRFDILGGRASDFLFPTRRSDCMTRQAFWQLIKRYAILAGVAKPLSPH 243 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 +R AT + GA + G + + YT A R RL ++R Sbjct: 244 TLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RERLKQLHARHHPR 296 >gi|225077168|ref|ZP_03720367.1| hypothetical protein NEIFLAOT_02223 [Neisseria flavescens NRL30031/H210] gi|224951516|gb|EEG32725.1| hypothetical protein NEIFLAOT_02223 [Neisseria flavescens NRL30031/H210] Length = 292 Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats. Identities = 45/278 (16%), Positives = 102/278 (36%), Gaps = 19/278 (6%) Query: 69 TTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVES 125 ++ LI + +S L+ N+ S+ ++ + G D+ + V + Sbjct: 1 MSMDDLIDKLLESLWLQDRLSHNTLQSYRRDLVKVAARLAEGGQDWLSADEFALSDAVYA 60 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 +S + L++ + ++ W A NP ++ PK + + T+ + + Sbjct: 61 EGEKSTSQARALSACKRMYVWLEETGQRADNPTRFLKAPKSERKLPTLITEAQIDALLAA 120 Query: 186 W----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-----------TG 230 G + + E + +GLR +++ + + + + SI+T Sbjct: 121 PDVETPHGLRDKALLEVMYATGLRVTEAVKLTLSDIDLHRGSIRTIGKGDKLRLVPLGQE 180 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGV 289 VE + L + + F++ + ++ + K A AG+ + S HG+ Sbjct: 181 AAYWVERYCNESRPLLLKNKICDEVFVSQKRSGISRQLAWMIVKEYAEAAGIASLSPHGL 240 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 R AT + G + G ++ + YT A+ Sbjct: 241 RHAFATHLVNHGVDLRSVQMMLGHSDINTTQIYTHVAN 278 >gi|168703879|ref|ZP_02736156.1| integrase/recombinase [Gemmata obscuriglobus UQM 2246] Length = 301 Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats. Identities = 57/289 (19%), Positives = 101/289 (34%), Gaps = 28/289 (9%) Query: 69 TTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRS 121 TL+ ++++ + + + S+ Q + G TT+ +RS Sbjct: 1 MTLEQGLADFLTHLGLEKNSSDKTVKSYREDLTQALGFVRDRTKKGHVAVGDWTTRTVRS 60 Query: 122 GVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 V S+ + L ++R K+ R + +NP L++ PK+ + T D Sbjct: 61 FVSWLHEQGYAKSTIARRLAAVRSFSKYLCRAGVLDVNPALALRGPKQDKKLPHFLTLAD 120 Query: 179 MQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-- 232 +Q+ + G + R E L SG+R S+ + + N I + G Sbjct: 121 VQKLLTAPPATDWAGRRDRAVLETLYASGIRVSELVGLDLLAVDLNDGVITVRGKGKKER 180 Query: 233 ----------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 + LLA T E F+NN ++ AG+ Sbjct: 181 LALLGPDAVKAITLWYEDRSALLARTGQETEAVFLNNKGGRLTTRSVGRLLSHHLKVAGL 240 Query: 283 N--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + S H +R AT DAGA + G K++ + YT + Sbjct: 241 DPRTSPHTLRHSFATHMLDAGADIRGVQELLGHKSLATTQVYTHVTTQR 289 >gi|218898984|ref|YP_002447395.1| tyrosine recombinase XerC [Bacillus cereus G9842] gi|228909656|ref|ZP_04073479.1| Tyrosine recombinase xerC [Bacillus thuringiensis IBL 200] gi|228940919|ref|ZP_04103478.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973848|ref|ZP_04134424.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980438|ref|ZP_04140748.1| Tyrosine recombinase xerC [Bacillus thuringiensis Bt407] gi|218544580|gb|ACK96974.1| tyrosine recombinase XerC [Bacillus cereus G9842] gi|228779258|gb|EEM27515.1| Tyrosine recombinase xerC [Bacillus thuringiensis Bt407] gi|228785873|gb|EEM33876.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818755|gb|EEM64821.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228849945|gb|EEM94776.1| Tyrosine recombinase xerC [Bacillus thuringiensis IBL 200] gi|326941600|gb|AEA17496.1| site-specific tyrosine recombinase XerC [Bacillus thuringiensis serovar chinensis CT-43] Length = 299 Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats. Identities = 42/287 (14%), Positives = 97/287 (33%), Gaps = 27/287 (9%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126 +K L+ + + + + S+++ + ++ G + +T +R + + Sbjct: 3 VKKLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYADVRLYLTTL 62 Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 S + ++S+R L+++ +R+ Y NP PK++ + E++++ Sbjct: 63 HDEKLARKSVARKVSSLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELF 122 Query: 184 SFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238 G+ + + E + +G+R S+ + + + +I K + Sbjct: 123 EVSDTGTPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFG 182 Query: 239 DGFMKLLAMTPIG------------KETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284 L F+N + + KA + Sbjct: 183 SYAQDSLITYIENGRKQLVNKTDEDSRMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRI 242 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 S H +R AT D GA + G + + + YT + RL Sbjct: 243 SPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTH-VSKERL 288 >gi|283787512|ref|YP_003367377.1| tyrosine recombinase [Citrobacter rodentium ICC168] gi|282950966|emb|CBG90643.1| tyrosine recombinase [Citrobacter rodentium ICC168] Length = 298 Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats. Identities = 42/278 (15%), Positives = 91/278 (32%), Gaps = 21/278 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSG---VESRK 127 + + + L+ + +++ D I ++G +++ +RS + Sbjct: 8 VDRFLRYLGVERQLSPITLKNYQRQLDAIIALAAEAGLESWQQCDAAMVRSFAVRSRRKG 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 P+S L+++R F W V + + NP V PK + +D+ + Sbjct: 68 LGPASLALRLSALRSFFDWIVSEGKLNANPAKGVSAPKAPRHLPKNIDVDDVNRLLDIDL 127 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243 + R E + +GLR S+ + HL + K + + + Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDINHLDLDTGEVWVMGKGSKERRLPIGRNAVA 187 Query: 244 LLAMTPIGKETFFINND-------KQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 + + F + ++++A F K G+ + H +R A Sbjct: 188 WIEHWLDLRGLFGCEENALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFA 247 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 T ++ + G + + YT D L Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 284 >gi|329963595|ref|ZP_08301073.1| integron integrase [Bacteroides fluxus YIT 12057] gi|328528500|gb|EGF55473.1| integron integrase [Bacteroides fluxus YIT 12057] Length = 372 Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats. Identities = 59/363 (16%), Positives = 108/363 (29%), Gaps = 54/363 (14%) Query: 2 TPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHES-------------------T 42 P ++L P V R+G+ G+ IRL E Sbjct: 7 KPKIKLSPVV-----RNGREFVEVTFGNDNDIRLSLSKEENVLLVGGRAYLPAEDFVLAE 61 Query: 43 FIPAYMS-------ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF 95 F Y+ A+ + P++E P Y + + ++ + Sbjct: 62 FFDRYVKMAFIDYSAIKETAPRKEEDKRPPLPEG--------YLEKLQQVRYSDHTVRVY 113 Query: 96 ESYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQE 151 SYF + +T I + + + Q + +++ + + Sbjct: 114 TSYFRDFQQHFEGRKIETVTPGEINDYLLYLIHEKNISSCQQNQRINAIK----FYYEKV 169 Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCR 211 C V R KR+ +KE++++ + F L +GLR S+ Sbjct: 170 LGQERRCYKVNRAKREKTLPDVLSKEEIKKILDATVTDLRFFCMFSILYSAGLRISELLE 229 Query: 212 AGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK---MNA 266 + + ++ K L MK L + + + Sbjct: 230 LKPGDINESRSLIRVRQGKGKKDRYTLLSKPLMKKLTEYNRLYKPKVWLFEHRPGEPFTE 289 Query: 267 TQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + S KA A +AG+ K H +R AT + G + G + E Y Sbjct: 290 SIVSKRLKAAAREAGITKRIYPHLLRHSFATHLLEQGTDIKIVKELMGHNNIKTTERYVH 349 Query: 325 GAD 327 AD Sbjct: 350 IAD 352 >gi|16078677|ref|NP_389496.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp. subtilis str. 168] gi|221309489|ref|ZP_03591336.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp. subtilis str. 168] gi|221313814|ref|ZP_03595619.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318738|ref|ZP_03600032.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp. subtilis str. JH642] gi|221323009|ref|ZP_03604303.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp. subtilis str. SMY] gi|321315380|ref|YP_004207667.1| site-specific tyrosine recombinase XerC [Bacillus subtilis BSn5] gi|729174|sp|P39776|XERC_BACSU RecName: Full=Tyrosine recombinase xerC gi|535348|gb|AAB03369.1| CodV [Bacillus subtilis subsp. subtilis str. JH642] gi|2633986|emb|CAB13487.1| site-specific tyrosine recombinase for chromosome partitioning [Bacillus subtilis subsp. subtilis str. 168] gi|320021654|gb|ADV96640.1| site-specific tyrosine recombinase XerC [Bacillus subtilis BSn5] Length = 304 Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats. Identities = 35/283 (12%), Positives = 91/283 (32%), Gaps = 27/283 (9%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVE 124 L EY + + + + +++ ++ G + T+ + Sbjct: 7 FVKLFVEYLQIE--KNYSQYTIVNYVDSIEEFETFLRVQGINGFEEAAYQDTRIFLTEAY 64 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQ 180 + + + + ++++R +K+ +R++ + NP V PK++ + +++ + Sbjct: 65 EKGLSRRTISKKISALRSFYKFLMREKLIEENPFQLVHLPKQEKRIPKFLYQKELEELFE 124 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD 239 G + + E L +G+R S+ C + + + ++ K + Sbjct: 125 VSDISQPAGMRDQALLELLYATGMRVSECCSITINDVDLFMDTVLVHGKGKKQRYIPFGS 184 Query: 240 GFMKLLAMTPIGKETFFINNDKQKM------------NATQFSIWFKAKATKAG--VNKS 285 + L + + K+ A KA ++ Sbjct: 185 YAREALKVYMNSGRQCLLMKAKEPHDLLFVNQRGGPLTARGIRHILSGLVQKASSTLHIH 244 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 H +R AT + GA + G + + YT + Sbjct: 245 PHMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQIYTHVSKE 287 >gi|307692277|ref|ZP_07634514.1| Phage integrase [Ruminococcaceae bacterium D16] Length = 385 Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats. Identities = 59/383 (15%), Positives = 117/383 (30%), Gaps = 41/383 (10%) Query: 1 MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRR-IRLPYPHESTFIPAYMSALTGSTPKRE 59 M + ++R G+ GH + + + L + + Sbjct: 1 MAKRRPSGDGMVRKRE-DGRWEGRIVIGHKADGTPIFRYVSAKTQKELLKKLHQNIEEYR 59 Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKH 118 +N L + + + S+ ++ + Y ++ + GD KIT + Sbjct: 60 DVNLNEGSRMPLSQWLDRWLEEYAAPSVRPSTLDGYRRYIERNLKPYLGDKPVGKITRED 119 Query: 119 IRSGVESRKH--------------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164 ++ + + SS + + AVR+ +A NP + P Sbjct: 120 VQKLYRELQRNGRQEYHPEYGHKLSGSSIRRIHGVLHQAMDAAVRENLIARNPTEGITLP 179 Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 K+KT + +++F + F L +GLR + C ++ Sbjct: 180 KKKTTPKQILNDAQLERFMDVIQKDEVWHEFFYTELTTGLRRGEICGLMWSDFDAAHGTL 239 Query: 225 KTQKTGT-----------------IITVELPDGFMKLLAMTPIGKETFFINNDK----QK 263 ++T T+ LP ++LLA + +I + Q Sbjct: 240 TVRRTMHVQKGGGLAAGETKTGAGKRTITLPPSTVELLAQRKKQSYSQWIFPNPLRPEQP 299 Query: 264 MNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAET 321 +N K +AG+ H +R AT + +G A L G +T Sbjct: 300 VNPNAAYDHLKKLLQQAGLPSIRFHDLRHTFATHALASGVDAKTLSGILGHTQASFTLDT 359 Query: 322 YTKGA-DRIRLGIKNSRRISSVV 343 YT D + + + Sbjct: 360 YTHVTGDMQKRASEIVGGFMEHI 382 >gi|229031461|ref|ZP_04187461.1| Tyrosine recombinase xerC [Bacillus cereus AH1271] gi|228729750|gb|EEL80730.1| Tyrosine recombinase xerC [Bacillus cereus AH1271] Length = 299 Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats. Identities = 43/287 (14%), Positives = 96/287 (33%), Gaps = 27/287 (9%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126 +K L+ + + + + S+++ + ++ G + +T +R + + Sbjct: 3 VKKLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYADVRLYLTTL 62 Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----M 179 S + ++S+R L+++ +R+ Y NP PK++ + E+ Sbjct: 63 HDEKLARKSVARKVSSLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELF 122 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238 + + G + + E + +G+R S+ + + + +I K + Sbjct: 123 EVSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFG 182 Query: 239 DGFMKLL------------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284 L T F+N + + KA + Sbjct: 183 SYAQDALITYIENGRKQLAHKTEEHSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRI 242 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 S H +R AT D GA + G + + + YT + RL Sbjct: 243 SPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTH-VSKERL 288 >gi|163759949|ref|ZP_02167033.1| tyrosine recombinase [Hoeflea phototrophica DFL-43] gi|162282907|gb|EDQ33194.1| tyrosine recombinase [Hoeflea phototrophica DFL-43] Length = 313 Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats. Identities = 45/286 (15%), Positives = 96/286 (33%), Gaps = 31/286 (10%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQ---IIRKSGDF--DYRKITTKHIRSGVESRKH 128 + + + A+N+ ++ D +++ G T + + S + +R Sbjct: 9 VEAFLEMMSAERGAALNTLEAYRRDLDDASSVVKALGSTLDRANADTIRTVISDLAARGF 68 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +P+S + L+++R +K+ + +P VE P+++ + + +D+ + + Sbjct: 69 SPASQARRLSALRQFYKFLHAEGLRDDDPTGVVESPRKRRSLPKILSVDDVSRLLAQAEA 128 Query: 189 GS-------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIIT 234 + R E L +G+R S+ + L + I K Sbjct: 129 DISKARDESETTQRIRFRALLELLYATGMRVSELVGLPYRVLAEDGRFLIIRGKGAKERM 188 Query: 235 VELPDGFMKLLAMTPIGK--------ETFFINNDKQKMNATQFSIWFKAKATKAGVN--- 283 V + L F N+ ++ F+ K A +AG+ Sbjct: 189 VPMSRPARLALEAWMAEIGEVAEETGFLFPANSSDGHLSRQVFARELKDVAARAGLPSAK 248 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 S H +R A+ GA + G + + YT D Sbjct: 249 VSPHVLRHAFASHLLAGGADLRAVQKLLGHTDISTTQIYTHVLDER 294 >gi|302338071|ref|YP_003803277.1| integrase family protein [Spirochaeta smaragdinae DSM 11293] gi|301635256|gb|ADK80683.1| integrase family protein [Spirochaeta smaragdinae DSM 11293] Length = 313 Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats. Identities = 51/290 (17%), Positives = 99/290 (34%), Gaps = 23/290 (7%) Query: 64 PRKKPTTLKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYR-KITTKHIRS 121 P + + ++ L+ Y + +L+ + ++ D+ R D +++ +R Sbjct: 2 PETEKSEIRSLVDTYLRYLVAVRTLSPRTVDAYGVDLDRFCRFVEDEGCGLELSPSLVRR 61 Query: 122 GVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 V K +P+S + L+S+R +++AV+Q NP SV R+ ++ + Sbjct: 62 FVAELKDALSPASCARALSSIRGFYRYAVKQGAAVSNPFASVRGKGRERRLPEVLSEVEA 121 Query: 180 QQFK---SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITV 235 + G + +L E L +G R S++ + + ++K K Sbjct: 122 SELLSFSENGFIGVRDKLLMELLYSTGARVSEAVGIDMLDIDTKKRTVKLLGKGDRQRIA 181 Query: 236 ELPDGFMKLLAMTPIGKETF------------FINNDKQKMNATQFSIWFKAKATKA--G 281 L M LA + F+N +++ + + G Sbjct: 182 YLGPQAMSALAAYLPYRRERVASDKKDAVQALFLNAHGERLTRRGAGFILRKHQERLASG 241 Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 H R AT D GA + G + YT RL Sbjct: 242 KRLHPHLFRHSFATHLLDRGADIRTVQELLGHADLSTTGIYTH-VSLKRL 290 >gi|257898819|ref|ZP_05678472.1| phage integrase [Enterococcus faecium Com15] gi|257836731|gb|EEV61805.1| phage integrase [Enterococcus faecium Com15] Length = 301 Score = 129 bits (325), Expect = 4e-28, Method: Composition-based stats. Identities = 43/283 (15%), Positives = 91/283 (32%), Gaps = 29/283 (10%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFDYRKITTKHIRSGVESR 126 T + Y + ++ ++E + +SGD D K +R + + Sbjct: 5 TWEQKFLRYL--IVERGYSEKTKEAYEEDILHFKHFLEESGDADLLKAEYFTVRVYLSAL 62 Query: 127 K-----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 ++ +S + + S+R +++ +++E + NP V K+ R + +++MQ Sbjct: 63 ADHRPSYSRNSISRKIASLRSFYQYLLKEEVIKENPFSYVHLKKKNLRLPRFFYEDEMQA 122 Query: 182 FKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVE 236 + R E L SG+R S+ V + + + K Sbjct: 123 LFDSVAGDSPLDLRNRALLEVLYGSGIRLSECSNLLVSDIDFDSEVMLIHGKGNKERYAP 182 Query: 237 LPDGFMKLLA------------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN- 283 L L + F+N+ + + T K+ ++ Sbjct: 183 LGSFAQDALQEYFTEGRQVLMTKYHEEHDIVFVNHHGKPITPTGIEYVLNQMIKKSSLDS 242 Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 H +R AT + GA + G + + Y Sbjct: 243 DIHPHMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHV 285 >gi|281491988|ref|YP_003353968.1| phage integrase [Lactococcus lactis subsp. lactis KF147] gi|281375697|gb|ADA65201.1| Phage protein, integrase [Lactococcus lactis subsp. lactis KF147] Length = 359 Score = 129 bits (325), Expect = 4e-28, Method: Composition-based stats. Identities = 40/338 (11%), Positives = 100/338 (29%), Gaps = 24/338 (7%) Query: 11 VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK-PT 69 + + ++G Y F+ G++ E + A +E I++P K Sbjct: 3 IKAYKKKNGTTAYKFKAYIGKKNGKSQYAEKSGFKTKADARAALHNIQEEIDNPTPKSAM 62 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129 T K L E+ + ++ ++ G T +++ Sbjct: 63 TFKELYDEWLLVYEKEVQNSTYYKTTRAFEKHVLPVIGSTKLSDFTPMELQNFRNDLSEK 122 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPC-----LSVERPKRKTEGIRPWTKEDMQQFKS 184 A + +R +F A Y+ NP +++ + + + Sbjct: 123 LKFARKLFGMVRKVFNHAALLSYIQANPALPVTSQGIKKKVEEKKDFYDTDELRDFMALV 182 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL------- 237 + + F L ++G+R + + + + I + + + E+ Sbjct: 183 EKTNDIKKIALFRILAFTGIRKGELLALEWKDYRKSTLDINKAISHSPVGYEILPPKANS 242 Query: 238 ---------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAH 287 + L T F + + ++ ++ W + + H Sbjct: 243 NRLLSLDEKTCKILDELHQTYPESTRIFESENGGMLSPSKPRKWLLEITKEKEIEPIRIH 302 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324 R A++ ++G + ++ G + YT Sbjct: 303 AFRHTHASLLFESGMSLKQVQYRLGHADLKTTMNIYTH 340 >gi|123440588|ref|YP_001004582.1| site-specific tyrosine recombinase XerC [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122087549|emb|CAL10330.1| putative integrase/recombinase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 303 Score = 129 bits (325), Expect = 4e-28, Method: Composition-based stats. Identities = 45/278 (16%), Positives = 90/278 (32%), Gaps = 21/278 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGVESRKHTP 130 + + + L+ + S+ ++ + G ++ + +RS V K Sbjct: 12 VEAFLRYLKVERQLSPLTITSYRRQLQALMEMGEQMGLAHWQTLDAAQVRSLVSRSKRAG 71 Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 SS L+++R W V Q + NP V P+ + +++ + Sbjct: 72 LHSSSLALRLSALRSFLNWLVSQGVLQANPAKGVSTPRSGRHLPKNIDVDEVAKLLDIDL 131 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243 + R E + +GLR S+ +H+ + K V + +K Sbjct: 132 NDPLAVRDRAMLEVMYGAGLRLSELVGMNCKHVDLASGEVWVMGKGSKERKVPIGKTAVK 191 Query: 244 LLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 L + F+ N ++++A F K GV + H +R A Sbjct: 192 WLDHWLELRELFEPQDDAIFLANTGKRISARNVQKRFAEWGVKQGVSSHIHPHKLRHSFA 251 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 T ++ + G + + YT D L Sbjct: 252 THMLESSGDLRAVQELLGHANLTTTQIYTH-LDFQHLA 288 >gi|317476478|ref|ZP_07935727.1| tyrosine recombinase XerD [Bacteroides eggerthii 1_2_48FAA] gi|316907504|gb|EFV29209.1| tyrosine recombinase XerD [Bacteroides eggerthii 1_2_48FAA] Length = 316 Score = 129 bits (325), Expect = 4e-28, Method: Composition-based stats. Identities = 53/296 (17%), Positives = 101/296 (34%), Gaps = 24/296 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKH-- 128 +I +Y++ SLA N+ ++ + +++ + + +T ++ Sbjct: 16 IIRKYQQYLKLEKSLAPNTFDAYMTDLQKLLHFLEGENIEVGNVTPDDLQRFAAGLHDIG 75 Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---- 183 P S + L+ ++ F + +Y+ +P +E PK + T E++ + Sbjct: 76 IHPRSQARILSGIKSFFHFLTVADYLETDPSELLEGPKIGFKIPEVLTVEEIDRIISAVD 135 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFM 242 EG + R E L GLR S+ C + L F K V + + Sbjct: 136 MDKKEGQRNRAILETLYSCGLRVSELCNLKLSDLYFEEGFIKVEGKGSKQRLVPISPRAI 195 Query: 243 KLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 K + ++ F+ ++ K A K G+ K S H R Sbjct: 196 KEIKYWLTDRNLGKIKKGYEDYVFLARWGNNISRIMVFHMIKELAEKTGITKNISPHTFR 255 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346 AT + GA + G +++ E YT DR L + + Sbjct: 256 HSFATHLLEGGANLRAIQCMLGHESIATTEIYTH-IDRNMLRSEIIEHHPRNIKYR 310 >gi|293607049|ref|ZP_06689392.1| integrase/recombinase [Achromobacter piechaudii ATCC 43553] gi|292814539|gb|EFF73677.1| integrase/recombinase [Achromobacter piechaudii ATCC 43553] Length = 332 Score = 129 bits (325), Expect = 4e-28, Method: Composition-based stats. Identities = 49/314 (15%), Positives = 91/314 (28%), Gaps = 51/314 (16%) Query: 71 LKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGD--------------------- 108 + I + + L+ N+ ++ R D Sbjct: 19 IDAFIDAVWLED----GLSANTLAAYRRDLTGFARWLEDPQAYAREMADRHGDAAGEHAL 74 Query: 109 -----FDYRKITTKHIRSGVESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161 I + R ++A + L ++R F WA+R+ +PCL++ Sbjct: 75 PVGPAKPLCDAQKADIEAWFAFRHEETRATTANRRLAALRRFFAWALREHRSQRDPCLTL 134 Query: 162 ERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217 K+ + +++ + G + R E L +GLR S+ + Sbjct: 135 VAAKQPPRLPKTLSEQQVDALLRAPDATQPRGLRDRAMLETLYATGLRVSELVGVRALDV 194 Query: 218 QNNIFSIKTQ--KTGTIITVELPDGFMKLLAMTPIGKETF----------FINNDKQKMN 265 N ++ K G V L + + FI + M+ Sbjct: 195 SLNEGVVRVVLGKGGKDRLVPLGAEAAHWIDLYSKTARPELAAGRQSDALFITGRAEAMS 254 Query: 266 ATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 F K A A + S H +R AT + GA + G + + YT Sbjct: 255 RQAFWQLVKKYALLADIHAPLSPHVLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYT 314 Query: 324 KGADRIRLGIKNSR 337 A + + Sbjct: 315 HVARERLKALHAAH 328 >gi|67458963|ref|YP_246587.1| site-specific tyrosine recombinase XerD [Rickettsia felis URRWXCal2] gi|75536599|sp|Q4UM01|XERD_RICFE RecName: Full=Tyrosine recombinase xerD gi|67004496|gb|AAY61422.1| Tyrosine recombinase XerD [Rickettsia felis URRWXCal2] Length = 306 Score = 129 bits (325), Expect = 5e-28, Method: Composition-based stats. Identities = 47/287 (16%), Positives = 101/287 (35%), Gaps = 35/287 (12%) Query: 73 WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRK--ITTKHIRSGVESRKH- 128 IS++ + +L+ NS +S++ + ITT+++R +E Sbjct: 2 EFISQFLEMLLAERALSKNSILSYKRDLFDFQNYLAKQRLSELNITTENVRDWIEYLASN 61 Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 S + +++++ +++ + + + A NP L+V+ PK + + + + ++ + Sbjct: 62 DLQARSINRKISTIKSYYEFLISENHTAFNPVLNVDLPKYQNKLPEILSIDQIKSLLEYC 121 Query: 187 -----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--------QNNIFSIKTQKTGTII 233 EG + L SGLR S+ + + + K Sbjct: 122 SQDNSPEGIRLNAMIHLLYASGLRVSELVSLKLTDILTNKTSKGEVRKIFSVLGKGNKER 181 Query: 234 TVELPDG----FMKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWFKAKATKA 280 + + + K LA+ + N M F+I K+ A A Sbjct: 182 VIVINEQAVISIAKYLAIRDVFVNKAKPKNLIYLFPSSALAGYMTRQNFAILLKSAALYA 241 Query: 281 GV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + + S H +R A+ + GA + G + + YT Sbjct: 242 NLNPEHISPHILRHSFASHLLEGGADLRVIQGLLGHADISTTQIYTH 288 >gi|293372135|ref|ZP_06618526.1| tyrosine recombinase XerC [Bacteroides ovatus SD CMC 3f] gi|292632927|gb|EFF51514.1| tyrosine recombinase XerC [Bacteroides ovatus SD CMC 3f] Length = 293 Score = 129 bits (325), Expect = 5e-28, Method: Composition-based stats. Identities = 47/276 (17%), Positives = 97/276 (35%), Gaps = 24/276 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSGVESRKH 128 LI + + + + + +++ Q+ G FD ++ + IR + S Sbjct: 2 LIESFLDYLQYERNYSEKTVLAYGEDIKQLQEFAQEEYGKFDPLEVEAELIREWIVSLMD 61 Query: 129 TPSS---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS- 184 + + L+S+R +K+ +RQ I+P ++ PK K + +M + Sbjct: 62 KGYTSTSVNRKLSSLRTFYKYLIRQGETTIDPLRKIKGPKNKKPLPVFLKENEMNRLLDD 121 Query: 185 ----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 +G + RL E +G+R S+ + + + +K + Sbjct: 122 TDFGQGFKGCRDRLVIEVFYATGMRLSELIGLDDKDVDFSASLLKVTGKRNKQRLIPFGD 181 Query: 241 FMKLLAMTPIGKET---------FFINNDKQKMNATQFSIWFKAKATKA--GVNKSAHGV 289 ++ L + I FFI + +++ K +K KS H + Sbjct: 182 ELQELMLEYINVRNETIPERSEAFFIRENGERLYKNLVYNLVKRNLSKVVTLKKKSPHVL 241 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 R AT + A + G +++ E YT Sbjct: 242 RHTFATTMLNNEAELGAVKELLGHESITTTEIYTHA 277 >gi|262406148|ref|ZP_06082698.1| tyrosine recombinase XerC [Bacteroides sp. 2_1_22] gi|294644043|ref|ZP_06721820.1| tyrosine recombinase XerC [Bacteroides ovatus SD CC 2a] gi|294810195|ref|ZP_06768862.1| tyrosine recombinase XerC [Bacteroides xylanisolvens SD CC 1b] gi|298483048|ref|ZP_07001229.1| tyrosine recombinase XerC [Bacteroides sp. D22] gi|262357023|gb|EEZ06113.1| tyrosine recombinase XerC [Bacteroides sp. 2_1_22] gi|292640567|gb|EFF58808.1| tyrosine recombinase XerC [Bacteroides ovatus SD CC 2a] gi|294442607|gb|EFG11407.1| tyrosine recombinase XerC [Bacteroides xylanisolvens SD CC 1b] gi|298270792|gb|EFI12372.1| tyrosine recombinase XerC [Bacteroides sp. D22] Length = 293 Score = 129 bits (325), Expect = 5e-28, Method: Composition-based stats. Identities = 46/276 (16%), Positives = 98/276 (35%), Gaps = 24/276 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSGVESRKH 128 LI + + + + + +++ Q+ G F+ ++ + IR + S Sbjct: 2 LIESFLDYLQYERNYSEKTVLAYGEDIKQLQEFAQEEYGKFNPLEVEAELIREWIVSLMD 61 Query: 129 TPSS---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + + L+S+R +K+ +RQ I+P ++ PK K + +M + Sbjct: 62 KGYTSTSVNRKLSSLRTFYKYLLRQGETTIDPLRKIKGPKNKKPLPVFLKENEMNRLLDE 121 Query: 186 W-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 +G + RL E +G+R S+ + + + +K + Sbjct: 122 TDFGEGFKGCRDRLIIEMFYATGMRLSELIGLDNKDVDFSASLLKVTGKRNKQRLIPFGD 181 Query: 241 FMKLLAMTPIGKET---------FFINNDKQKMNATQFSIWFKA-KATKAGVNK-SAHGV 289 ++ L + I FFI + +++ K + A + K S H + Sbjct: 182 ELQELMLEYINVRNETIPERSEAFFIRENGERLYKNLVYNLVKRNLSKVATLKKKSPHVL 241 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 R AT + A + G +++ E YT Sbjct: 242 RHTFATTMLNNEAELGAVKELLGHESITTTEIYTHA 277 >gi|46580064|ref|YP_010872.1| phage integrase family site specific recombinase [Desulfovibrio vulgaris str. Hildenborough] gi|46449480|gb|AAS96131.1| site-specific recombinase, phage integrase family [Desulfovibrio vulgaris str. Hildenborough] Length = 294 Score = 129 bits (325), Expect = 5e-28, Method: Composition-based stats. Identities = 47/283 (16%), Positives = 92/283 (32%), Gaps = 22/283 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGV---ESRKH 128 + + + LA N+ ++ + ++ + ++ + + V R Sbjct: 1 MDRWLEHLLVERGLAENTLAAYSADLIELQVFLEERGCLLAEVDEQTLFMHVVDLRRRGM 60 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-- 186 + + L ++R F +AV + + +P L +E PK T+++M + Sbjct: 61 AGRTLARHLATLRGFFAFAVGEGELEADPALFLENPKLARNLPDVLTRDEMATILARPDL 120 Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 G + R E + +GLR S+ C ++ G + Sbjct: 121 SDRLGFRDRTMLELMYAAGLRVSELCALRPLDFDAQAGVVRVFGKGAKERIVPVHHVSCA 180 Query: 245 LAMTPIGKETFFINNDKQKM---------NATQFSIWFKAKATKAGVNK--SAHGVRKFS 293 L + + + M + K +AG++K S H R Sbjct: 181 LVTAYLRDWRPAFSPVEPAMFLNRSGKGLSRQAVWKVVKRHVAEAGIHKDISPHTFRHSF 240 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKN 335 AT + GA + G + E YT ADR+R Sbjct: 241 ATHLLEGGADLRSVQLLLGHADISATEIYTHVQADRLRRIHNA 283 >gi|301063905|ref|ZP_07204380.1| tyrosine recombinase XerC [delta proteobacterium NaphS2] gi|300441980|gb|EFK06270.1| tyrosine recombinase XerC [delta proteobacterium NaphS2] Length = 329 Score = 129 bits (325), Expect = 5e-28, Method: Composition-based stats. Identities = 51/313 (16%), Positives = 103/313 (32%), Gaps = 44/313 (14%) Query: 71 LKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSG------------DFDYRKITTK 117 L+ I + + + +++ ++ +Q DF +I +K Sbjct: 23 LEEGIKRFIRYLHDEKGYSKHTQRNYRVDLEQFASFVAREMALPLKETDLDFSIEEIESK 82 Query: 118 HIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 IR V S K ++ + L+++R F + ++E + NP ++ PK + Sbjct: 83 TIRKFVGSLYGKLKRTTIARKLSAVRSFFLFLEKEELIKTNPAGELQSPKLEKYIPSHLP 142 Query: 176 KEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTG 230 +++ + + G + E L G+R ++ V + ++ T K Sbjct: 143 VDEVFRLMDLPNRERSLGLRDLAILEVLYSCGIRVAELAGMNVSSIDHDQRLVKVTGKGN 202 Query: 231 TIITVELPDGFMKLLAMT-------------PIGKETFFINNDKQKMNATQFSIWFKAKA 277 V + +K + E +N ++ K A Sbjct: 203 KERLVPIGRQALKAVKAYLAATDEDRRRAALRGEGEPLIMNFRGGRLTTRSIGRIVKKYA 262 Query: 278 TKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 G+ + S H +R AT D GA + G K++ + YT + Sbjct: 263 GAGGLTEDISPHSMRHTFATHMLDGGADLRSVQELLGHKSLSTTQKYTHVS--------- 313 Query: 336 SRRISSVVDSDDP 348 R+ V D P Sbjct: 314 LDRLMEVYDKTHP 326 >gi|253578510|ref|ZP_04855782.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850828|gb|EES78786.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 294 Score = 129 bits (325), Expect = 5e-28, Method: Composition-based stats. Identities = 42/260 (16%), Positives = 89/260 (34%), Gaps = 22/260 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD------FDYRKITTKHIRSGVESRKHTPSSAIQFLT 138 + N+ IS++ ++ + D +++ + S +E K SS + + Sbjct: 16 KKTSANTEISYQRDLKKMAEFLKERGIRNYKDVKELELEGYISYMEREKFASSSISRSVA 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194 SMR F++ ++ +A +P +++ PK + T E++ + + + Sbjct: 76 SMRAFFQYLWKEGVIAEDPADNLKPPKVEKRAPEILTIEEVDKLLQQPKLDTPKGIRDSA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254 E L +G+R S+ + + + + G + + K + T Sbjct: 136 MLELLYATGMRVSEMLHLQIFDVNLQFGYVVCNENGKERIIPIGIPCKKAMERYLQTART 195 Query: 255 FF----------INNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGA 302 F N + M+ F K A AG+ + H +R A GA Sbjct: 196 VFVKDEKETALFTNCSGKAMSRQGFWKVLKGYADDAGIKRDIAPHTLRHSFAVHMLQNGA 255 Query: 303 TAHELMATYGWKTVDQAETY 322 + G + + Y Sbjct: 256 DIRSVQEMLGHSDISTTQVY 275 >gi|239816431|ref|YP_002945341.1| tyrosine recombinase XerD [Variovorax paradoxus S110] gi|239803008|gb|ACS20075.1| tyrosine recombinase XerD [Variovorax paradoxus S110] Length = 303 Score = 129 bits (325), Expect = 5e-28, Method: Composition-based stats. Identities = 46/286 (16%), Positives = 95/286 (33%), Gaps = 30/286 (10%) Query: 71 LKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVES 125 + I + + L+ N+ ++ + G +++ + + Sbjct: 12 IDDFIDALWLED----GLSKNTLAAYRRDLALFAQWLGSQRSGRALDTAQESDLQAYMGA 67 Query: 126 R---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 R + +SA + LT + ++WA+R+ +A +P + + ++ I+ +++ + Sbjct: 68 RLSTRGKATSANRRLTVFKRYYRWALRERRIAADPSIRLAPARQMPRAIKTLSEKQVDDL 127 Query: 183 KSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAG-VQHLQNNIFSIKTQKTGTIITVEL 237 + G + R E + SGLR S+ + N+ K V Sbjct: 128 LAAPDVETPLGLRDRAMLELMYASGLRVSELVALKVIDMSLNDGVLRVLGKGSKERLVPF 187 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQK----------MNATQFSIWFKAKATKAGV--NKS 285 + + ++ + M F I K +A AG+ S Sbjct: 188 GGEARRWIERYLDESRPTILDGQQTPDLFVTARGAGMTRVMFWIIVKKQAAAAGIHVPLS 247 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 H +R AT + G + G + YT A R RL Sbjct: 248 PHTLRHAFATHLLNRGVDLRAVQLLLGHADISTTTIYTHVA-RERL 292 >gi|212639574|ref|YP_002316094.1| site-specific tyrosine recombinase XerC [Anoxybacillus flavithermus WK1] gi|254799325|sp|B7GGC7|XERC_ANOFW RecName: Full=Tyrosine recombinase xerC gi|212561054|gb|ACJ34109.1| Site-specific recombinase XerD [Anoxybacillus flavithermus WK1] Length = 300 Score = 129 bits (325), Expect = 5e-28, Method: Composition-based stats. Identities = 39/277 (14%), Positives = 90/277 (32%), Gaps = 27/277 (9%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI------TTKHIRSGVESRK 127 L EY + + + + ++ + +++ + + + RK Sbjct: 10 LFIEYLQIE--KNYSEYTIACYKHDIGEFFEFMEREQIKQLQQVSYSDVRLFLTELHQRK 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + S + ++S+R +K+ +R++ V+ NP PK++ + ++++Q Sbjct: 68 QSSRSIARKMSSLRSFYKFLLREKIVSENPFALASLPKKEQKIPHFLYPDELEQLFVVND 127 Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFM 242 + + + E L +G+R S+ C + H+ ++ +I + K V Sbjct: 128 LNTAIGQRNQAMIELLYATGIRVSECCNIRLSHIDFSVCTILISGKGNKQRYVPFGTYAK 187 Query: 243 KLLAMTPIGKETFFINNDKQKM------------NATQFSIWFKAKATKA--GVNKSAHG 288 + L + K +A + S H Sbjct: 188 EALERYIQDGRQQLASKAKTPTDVLFLNARGGALTPRGVRHILNDIVERAALSLKVSPHT 247 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 R AT + GA + G + + YT Sbjct: 248 FRHTFATHLLNEGADLRSVQELLGHAHLSSTQVYTHV 284 >gi|312797553|ref|YP_004030475.1| integrase/recombinase (XerC/CodV family) [Burkholderia rhizoxinica HKI 454] gi|312169328|emb|CBW76331.1| Integrase/recombinase (XerC/CodV family) [Burkholderia rhizoxinica HKI 454] Length = 312 Score = 129 bits (325), Expect = 5e-28, Method: Composition-based stats. Identities = 47/288 (16%), Positives = 88/288 (30%), Gaps = 31/288 (10%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TP 130 I+ Y S L+ ++ + D + + +G + ++T +R V +P Sbjct: 8 IARYLDSLAHERRLSAHTLRGYAHELDMLRQLAGTRELTQLTPVDVRGAVSRAHSGGLSP 67 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 S L+ R ++W + + +NP V PKR + + +D + Sbjct: 68 RSIAHRLSVWRSFYRWLALHQPLTMNPVAGVRAPKRAKTLPKALSVDDAVTLMEASCIET 127 Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------GTIIT 234 + R E GLR ++ + + + G T Sbjct: 128 PDALRDRAMLELFYSCGLRLAELIGLDIAFVNTAQYRSVGWIDLGTADVTVLGKGGKRRT 187 Query: 235 VELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--K 284 V + + L F++ +M+A + A AGV Sbjct: 188 VPIGSKALDALHRWLAVRDQLLKHDPHPLFLSARGMRMSAGVVRERVRRAALAAGVPSHV 247 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R AT + + G +V + YT D L Sbjct: 248 HPHVLRHSFATHLLQSSGDLRAVQELLGHASVAATQVYT-SLDFQHLA 294 >gi|169826674|ref|YP_001696832.1| integrase-recombinase protein [Lysinibacillus sphaericus C3-41] gi|168991162|gb|ACA38702.1| integrase-recombinase protein [Lysinibacillus sphaericus C3-41] Length = 277 Score = 129 bits (325), Expect = 5e-28, Method: Composition-based stats. Identities = 36/267 (13%), Positives = 94/267 (35%), Gaps = 11/267 (4%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP-- 130 ++ + + + S++ Q + + +Y ++ K IR+ + + Sbjct: 4 EVLQAFYDDN-CNQFSSETIRSYKISLSQFFSE-SEKNYDEVRAKDIRNWLATLSEKGLK 61 Query: 131 -SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 S LT+++ +++ + + + NP V+ PK + K + + + Sbjct: 62 IRSIQLKLTALKSFYQYCIEENKINHNPTKKVKTPKSEDLLPYYLNKRQLALLQELTKDN 121 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDGF----MK 243 + R E L +G+R ++ ++ ++ I+ K V Sbjct: 122 LRERAIVEVLYATGVRINELLNIKLEDIKWDTRQIWIRKGKGNKDRFVLFSHECALRLKN 181 Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGAT 303 L + + F + + ++ ++F+ + + G + H +R A A+ G Sbjct: 182 YLHVRYENSDFLFSSPRGKHISCDLVQLFFRKYSKELGFKVTPHTLRHTFAAHLAEKGME 241 Query: 304 AHELMATYGWKTVDQAETYTKGADRIR 330 + G ++ YT+ + R Sbjct: 242 FIYIQDLLGHANINSTRIYTRLMNHAR 268 >gi|121604082|ref|YP_981411.1| tyrosine recombinase XerD [Polaromonas naphthalenivorans CJ2] gi|120593051|gb|ABM36490.1| tyrosine recombinase XerD subunit [Polaromonas naphthalenivorans CJ2] Length = 300 Score = 129 bits (325), Expect = 5e-28, Method: Composition-based stats. Identities = 47/287 (16%), Positives = 94/287 (32%), Gaps = 30/287 (10%) Query: 70 TLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSG-----DFDYRKITTKHIRSGV 123 ++ I + + L+ N+ ++ +++ Sbjct: 8 SIDAFIDALWLED----GLSRNTLAAYRRDLSLYAGWLHAKEQQHRKLDDTDEDDLKAYF 63 Query: 124 ESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 R +SA + LT + F+WA+R+ +A +P L ++ K+ + ++ + Sbjct: 64 SFRHAATKATSANRCLTVFKRYFRWALRENLIAADPTLKLQSAKQALRVPKVMSEAQVDA 123 Query: 182 FKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236 + + + + R E + SGLR S+ H+ N +++ V Sbjct: 124 LLAAPDDDTPLGLRDRAMLELMYASGLRVSELVGLKTFHVGLNEGALRVMGKGSAERLVP 183 Query: 237 LPDGFMKLLAMTP----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284 + + + F+ M+ F + K A AG+ Sbjct: 184 FGQVAREWIVRYIAESRPAILGGQQTDDLFVTGHGHGMSRVMFWMLVKKYALLAGIHSPL 243 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 S H +R AT + GA + G + YT A R RL Sbjct: 244 SPHTLRHAFATHLLNHGADLRAVQMLLGHADISTTTIYTHVA-RERL 289 >gi|94986617|ref|YP_594550.1| prophage DLP12 integrase [Lawsonia intracellularis PHE/MN1-00] gi|94730866|emb|CAJ54229.1| prophage DLP12 integrase [Lawsonia intracellularis PHE/MN1-00] Length = 388 Score = 129 bits (325), Expect = 5e-28, Method: Composition-based stats. Identities = 53/368 (14%), Positives = 107/368 (29%), Gaps = 31/368 (8%) Query: 2 TPSLRLPPFVTKERTRHG-----KIIYYFRKGHGRRIRLPYPH------ESTFIPAYMSA 50 + P +E R G K+ Y K +G+ I S Sbjct: 14 RNKTKYPGVFFREEKRIGASGSEKVYYVVFKKNGKVIEEKVGRQFIDDMTPAKASRIRSE 73 Query: 51 LTGSTPKREYINSPRKKPTTLKWLIS-EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF 109 L K + + +L+ I + + A N+ I Y + G Sbjct: 74 LIEGKRKTKKLAKEEALAASLRKNIHGIWEEYAKGRPKNKNTDIDLCRYELHLKNIFGHK 133 Query: 110 DYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQ--EYVAINPCLSVERP 164 +ITT +R ++ +P + + L +R + ++ + + L E P Sbjct: 134 FPEEITTNDVRIFKDNLIQSGKSPQTVLNTLALLRRILRFGEKNGFCTLPDRSQLVFEMP 193 Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIF 222 K T+ ++ + +A L +G+R L Sbjct: 194 KVDNIKTENLTETQLKALMEALDAETDQVMASCLRLALVTGMRKGALLALEWTDLDFEQG 253 Query: 223 SIKTQKTGTIITVELPDGFMKL--LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280 I Q + + + + + ++ + + + F KA Sbjct: 254 IITLQGKSAKKGKTAYIPMSEAAKIILEKLPHTSRYVFPNTKGEKRSDFRSMPNRIKQKA 313 Query: 281 GVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 + + HG+R A+ A +G + L + + Y L + Sbjct: 314 QLPADFRPFHGLRHTYASHLASSGKVDLYTLQKLLTHSSPQMTQRYAH------LADEAM 367 Query: 337 RRISSVVD 344 +R + V D Sbjct: 368 KRAARVAD 375 >gi|21716073|ref|NP_663635.1| putative integrase [Lactococcus phage ul36] gi|21700236|gb|AAM75749.1| putative integrase [Lactococcus phage ul36] gi|89212524|gb|ABD63636.1| putative integrase [Lactococcus phage ul36.k1] gi|89212585|gb|ABD63696.1| putative integrase [Lactococcus phage ul36.k1t1] gi|89212637|gb|ABD63747.1| putative integrase [Lactococcus phage ul36.t1] gi|89212690|gb|ABD63799.1| putative integrase [Lactococcus phage ul36.t1k1] Length = 359 Score = 129 bits (325), Expect = 5e-28, Method: Composition-based stats. Identities = 40/338 (11%), Positives = 100/338 (29%), Gaps = 24/338 (7%) Query: 11 VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK-PT 69 + + ++G Y F+ G++ E + A +E I++P K Sbjct: 3 IKAYKKKNGTTAYKFKAYIGKKNGKSQYAEKSGFKTKADARAALHNIQEEIDNPTPKSAM 62 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129 T K L E+ + ++ ++ G T +++ Sbjct: 63 TFKELYDEWLLVYEKEVQNSTYYKTTRAFEKHVLPVIGSTKLSDFTPMELQNFRNDLSEK 122 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPC-----LSVERPKRKTEGIRPWTKEDMQQFKS 184 A + +R +F A Y+ NP +++ + + + Sbjct: 123 LKFARKLFGMVRKVFNHAALLSYIQANPAAPVTSQGIKKKVEEKKDFYDTDELRDFMALV 182 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL------- 237 + + F L ++G+R + + + + I + + + E+ Sbjct: 183 EKTNDIKKIALFRILAFTGIRKGELLALEWKDYRKSTLDINKAISHSPVGYEILPPKANS 242 Query: 238 ---------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAH 287 + L T F + + ++ ++ W + + H Sbjct: 243 NRLLSLDEKTCKILDELHQTYPESTRIFESENGGMLSPSKPRKWLLEITKEKEIEPIRIH 302 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324 R A++ ++G + ++ G + YT Sbjct: 303 AFRHTHASLLFESGMSLKQVQYRLGHADLKTTMNIYTH 340 >gi|304382767|ref|ZP_07365251.1| tyrosine recombinase XerD [Prevotella marshii DSM 16973] gi|304336086|gb|EFM02332.1| tyrosine recombinase XerD [Prevotella marshii DSM 16973] Length = 315 Score = 129 bits (325), Expect = 5e-28, Method: Composition-based stats. Identities = 46/275 (16%), Positives = 102/275 (37%), Gaps = 23/275 (8%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESR--- 126 ++ Y + + + N+ ++ ++++ ++ +H++ Sbjct: 10 EMVKAYLRYLKLQRNYSGNTLEAYRRDLNRLLVYLKQEGLTPTEVKLEHLQHFSAQLYDC 69 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 S + L+ +R +++ Y+ +P +E P+ T + E++ + ++ Sbjct: 70 GIGARSQARVLSGVRSFYRFLQLDGYMESDPSELLESPQIGTHLPEVLSTEEVDRLENSL 129 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241 EG + R E L GLR ++ + +L + I+ K V + Sbjct: 130 DLSKPEGQRNRAIIEVLFSCGLRVTELVSLRLSNLYLDEGFIRVLGKGRKERFVPISPRA 189 Query: 242 MKLLAMTPIGKE----------TFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289 +K L + + F+N + T I K +AT+AG+ K+ H + Sbjct: 190 IKELKLWFYDRNELKIRAGEEDYVFLNRRGVHLTRTMILIMIKRQATEAGIQKTISPHTL 249 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT + GA + G +++ E YT Sbjct: 250 RHSFATALLEGGADLRAIQVMLGHESISTTEIYTH 284 >gi|229174497|ref|ZP_04302029.1| Tyrosine recombinase xerC [Bacillus cereus MM3] gi|228609057|gb|EEK66347.1| Tyrosine recombinase xerC [Bacillus cereus MM3] Length = 299 Score = 129 bits (325), Expect = 5e-28, Method: Composition-based stats. Identities = 43/287 (14%), Positives = 96/287 (33%), Gaps = 27/287 (9%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126 +K L+ + + + + S+++ + ++ G + +T +R + + Sbjct: 3 VKKLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYADVRLYLTTL 62 Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----M 179 S + ++S+R L+++ +R+ Y NP PK++ + E+ Sbjct: 63 HDEKLARKSVARKVSSLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELF 122 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238 + + G + + E + +G+R S+ + + + +I K + Sbjct: 123 EVADTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFG 182 Query: 239 DGFMKLL------------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284 L T F+N + + KA + Sbjct: 183 SYAQDALITYIENGRKQLAHKTEEHSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRI 242 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 S H +R AT D GA + G + + + YT + RL Sbjct: 243 SPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTH-VSKERL 288 >gi|328952112|ref|YP_004369446.1| Tyrosine recombinase xerC [Desulfobacca acetoxidans DSM 11109] gi|328452436|gb|AEB08265.1| Tyrosine recombinase xerC [Desulfobacca acetoxidans DSM 11109] Length = 295 Score = 129 bits (325), Expect = 5e-28, Method: Composition-based stats. Identities = 44/277 (15%), Positives = 91/277 (32%), Gaps = 24/277 (8%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYF---DQIIRKSGDFDYRKITTKHIR---SGVE 124 + ++ + LA + ++ + G + + T + ++ + +E Sbjct: 2 DAAVEQFFQHLIVERGLAPLTVEAYAHDLAGLRSFLTGLGRSRWDETTLEDLQFFLNHLE 61 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + P S + L+++R L+++ +RQ + NP ++ PK E++ + + Sbjct: 62 EQGVGPRSRARKLSAVRQLYRFLLRQGTTSHNPLEWLDSPKLPKGLPTVLGLEEVDRLLA 121 Query: 185 FW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD 239 G + E L +G+R S+ L + K G + + Sbjct: 122 APDPTTPLGQRDDAMLELLYATGMRVSELVGLTASQLDLRRGVVLVRGKGGKERLIPMVM 181 Query: 240 GFMKLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAGVNK--SAH 287 ++ L + + K F K A + G+ K S H Sbjct: 182 RAVEKLQLYLQYVRPVLLKRQKTPELFLNRSGTGLTRQGFWKILKGYARQTGLPKDLSPH 241 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT GA L G + + YT Sbjct: 242 TLRHSFATHLLWQGADLRALQLLLGHADISTTQIYTH 278 >gi|193068085|ref|ZP_03049050.1| tyrosine recombinase XerC [Escherichia coli E110019] gi|192958705|gb|EDV89143.1| tyrosine recombinase XerC [Escherichia coli E110019] Length = 298 Score = 129 bits (325), Expect = 5e-28, Method: Composition-based stats. Identities = 42/278 (15%), Positives = 90/278 (32%), Gaps = 21/278 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SRK 127 + Y + L+ + ++++ + II + + + + + Sbjct: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +S L+++R F W V Q + NP V PK + +DM + Sbjct: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI 127 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243 + R E + +GLR S+ ++HL + K + + + Sbjct: 128 NDPLAVRDRAMLEVMYGTGLRLSELVGLDIKHLDLESGEVWVMGKGCKERRLPIGRNAVA 187 Query: 244 LLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 + ++ F +D ++++A F K G+ + H +R A Sbjct: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 T ++ + G + + YT D L Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 284 >gi|188532374|ref|YP_001906171.1| site-specific tyrosine recombinase XerC [Erwinia tasmaniensis Et1/99] gi|188027416|emb|CAO95263.1| Tyrosine recombinase XerC [Erwinia tasmaniensis Et1/99] Length = 302 Score = 129 bits (325), Expect = 5e-28, Method: Composition-based stats. Identities = 37/280 (13%), Positives = 90/280 (32%), Gaps = 21/280 (7%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIR---SGVES 125 + + + L+ ++I++ + + + D+ ++ +R + Sbjct: 9 AAVEGFLRFLKVERQLSPLTQINYRRQLSALIVLLDELKVVDWARLDAALVRSLAARSTR 68 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 P+S L+++R W + Q + NP V P+ + +++ + Sbjct: 69 SGLKPASLALRLSALRSFLDWLMSQGMIKANPAKGVATPRAGRHLPKNIDVDEVNRLLEI 128 Query: 186 WSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGF 241 + R E + +GLR S+ + HL + K + + Sbjct: 129 DLNDPLAVRDRAMLEVMYGAGLRLSELVGIDLGHLDLASGEVWVVGKGSKERRLPMGRTA 188 Query: 242 MKLLAMTPIGKETFFINND-------KQKMNATQFSIWFKAKATKAGV--NKSAHGVRKF 292 + + +E F ++ ++++ F K G+ + H +R Sbjct: 189 VHWIENWLEMRELFDPEDNALFLSNKGKRISTRNVQKRFAEWGVKQGISSHIHPHKLRHS 248 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 AT ++ + G + + YT D L Sbjct: 249 FATHMLESSGDLRAVQELLGHANLTTTQIYTH-LDFQHLA 287 >gi|13095744|ref|NP_076635.1| integrase [Lactococcus phage bIL286] gi|15673415|ref|NP_267589.1| integrase [Lactococcus lactis subsp. lactis Il1403] gi|12724422|gb|AAK05531.1|AE006373_10 prophage pi3 protein 60, integrase [Lactococcus lactis subsp. lactis Il1403] gi|12830933|gb|AAK08288.1|AF323669_1 integrase [Lactococcus phage bIL286] Length = 359 Score = 129 bits (325), Expect = 5e-28, Method: Composition-based stats. Identities = 40/338 (11%), Positives = 100/338 (29%), Gaps = 24/338 (7%) Query: 11 VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP-T 69 + + ++G Y F+ G++ E + A +E I++P K Sbjct: 3 IKAYKKKNGTTAYKFKAYIGKKNGKSQYAEKSGFKTKADARAALHNIQEEIDNPTPKSSM 62 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129 T K L E+ + ++ ++ G T +++ Sbjct: 63 TFKELYDEWLLVYEKEVQNSTYYKTTRAFEKHVLPVIGSTKLSDFTPMELQNFRNDLSEK 122 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPC-----LSVERPKRKTEGIRPWTKEDMQQFKS 184 A + +R +F A Y+ NP +++ + + + Sbjct: 123 LKFARKLFGMVRKVFNHAALLSYIQANPALPVTSQGIKKKVEEKKDFYDTDELRDFMALV 182 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL------- 237 + + F L ++G+R + + + + I + + + E+ Sbjct: 183 EKTNDIKKIALFRILAFTGIRKGELLALEWKDYRKSTLDINKAISHSPVGYEILPPKANS 242 Query: 238 ---------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAH 287 + L T F + + ++ ++ W + + H Sbjct: 243 NRLLSLDEKTCKILDELHQTYPESTRIFESENGGMLSPSKPRKWLLEITKEKEIEPIRIH 302 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324 R A++ ++G + ++ G + YT Sbjct: 303 AFRHTHASLLFESGMSLKQVQYRLGHADLKTTMNIYTH 340 >gi|298253366|ref|ZP_06977158.1| site-specific recombinase XerD [Gardnerella vaginalis 5-1] gi|297532761|gb|EFH71647.1| site-specific recombinase XerD [Gardnerella vaginalis 5-1] Length = 322 Score = 129 bits (325), Expect = 5e-28, Method: Composition-based stats. Identities = 54/287 (18%), Positives = 98/287 (34%), Gaps = 34/287 (11%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGV--ESRK 127 LI +Y L ++ ++ S Q + G + ++TT +RS + ESR Sbjct: 21 LIDDYIDYVRANKGLGERTQKAYASDILQCLAWCNRHGFNNISELTTDDLRSWMADESRS 80 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED--------- 178 H SS + + ++R F W EY++ NP + PK K + Sbjct: 81 HARSSLARKVVAVRGFFAWCQHVEYISGNPAEILMTPKIKNMLPSVLDEYQAESLMNNVD 140 Query: 179 ------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGT 231 K+ + G + E L +G+R + +Q + + T K Sbjct: 141 SKANVSTSCPKNQKAVGLRNAAILELLYATGIRVGELTSLNIQDINFSSHTIKVTGKGNK 200 Query: 232 IITVELPDGFMKLLAMTPIGKETF-----------FINNDKQKMNATQFSIWFKAKATKA 280 V K L+ F+ ++++ +A A Sbjct: 201 QRVVPFGVPAYKALSAWISKDGREILLRNSVEEAVFLGTRGKRIDQRLVRQIVHDEAKSA 260 Query: 281 GVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 V S H +R +AT + GA E+ G +++ + YT + Sbjct: 261 HVPDISPHALRHSAATHMLNGGADLREVQELLGHSSLNTTQRYTHVS 307 >gi|77918237|ref|YP_356052.1| site-specific recombinase [Pelobacter carbinolicus DSM 2380] gi|77544320|gb|ABA87882.1| site-specific recombinase [Pelobacter carbinolicus DSM 2380] Length = 332 Score = 129 bits (325), Expect = 5e-28, Method: Composition-based stats. Identities = 49/304 (16%), Positives = 104/304 (34%), Gaps = 36/304 (11%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD-----------YRKITTKHI 119 LI+ + + +L+ ++ ++ + R ++ + Sbjct: 32 DRLIARFCRHLEVERNLSPHTLRAYRQDLTEFSRFLKQEAGEEGSSNTASAIEQVDALVL 91 Query: 120 RSGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 R + + + L+++R F++ VRQ +A++P +V PKR+ + T + Sbjct: 92 RRYLARLHKRNRKTTIGRKLSAVRSFFRYLVRQGELAVSPAETVATPKREQYLPKVLTVD 151 Query: 178 DMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTI 232 ++ + R E SGLR + V H+ ++ + Sbjct: 152 EVFALIKAADGDEPLTVRDRAILELFYSSGLRVGELEGLDVGHVDLRDGLVRVRGKGDKE 211 Query: 233 ITVELPDGFMKLLAMT------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284 V + + L P ++ F+N ++++ K AG+ + Sbjct: 212 RIVPMGRPARQALGRYLAERGVPDREQPLFLNYRGGRLSSRSIERNLKKWLLCAGILKDA 271 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 S H +R AT D GA + G ++ + YT+ + R+ V D Sbjct: 272 SPHALRHTFATHLLDGGADLRAIQELLGHASLSTTQKYTQVS---------LDRLMEVYD 322 Query: 345 SDDP 348 P Sbjct: 323 RTHP 326 >gi|283470467|emb|CAQ49678.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus ST398] Length = 298 Score = 129 bits (325), Expect = 5e-28, Method: Composition-based stats. Identities = 36/276 (13%), Positives = 87/276 (31%), Gaps = 23/276 (8%) Query: 76 SEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH------ 128 + + + + ++ S++ Q + ++ T R + Sbjct: 6 EAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLEQEHL-QLNTFEYRDARNYLSYLYSNHL 64 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +S + ++++R +++ + + INP + + PK++ + + +E+M+ E Sbjct: 65 KRTSVSRKISTLRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEALFKTVEE 124 Query: 189 G----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMK 243 + R+ E L +G+R S+ Q + K V + Sbjct: 125 DASKSLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVLGKGSKERFVPFGAYCRQ 184 Query: 244 LLAMTPIGKETFFINNDKQ--------KMNATQFSIWFKAKATK-AGV-NKSAHGVRKFS 293 + + N + + AGV H +R Sbjct: 185 SIENYLEHFKPIQSCNHDFLIVNMKGEAITERGVRYVLNNIVKRTAGVSEIHPHKLRHTF 244 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + GA + + G + YT +++ Sbjct: 245 ATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQ 280 >gi|319954827|ref|YP_004166094.1| integrase family protein [Cellulophaga algicola DSM 14237] gi|319423487|gb|ADV50596.1| integrase family protein [Cellulophaga algicola DSM 14237] Length = 375 Score = 129 bits (325), Expect = 5e-28, Method: Composition-based stats. Identities = 47/273 (17%), Positives = 92/273 (33%), Gaps = 9/273 (3%) Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122 RK K+ EY A N+ ++ S F+ I D + +R Sbjct: 95 RSRKPKDGFKYCPEEYLLKLELKRYADNTVRNYVSCFEGFINYYYTIDPIALNEIDVRKY 154 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 ++ S ++ + K+ + N ++ERP+++ + +K+++ Sbjct: 155 LQKLIQEGKSNSYINMAVNSI-KFFYEIVHGMPNRFYAIERPRKERQLPEVISKDEIVLI 213 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDG 240 + + + R L +GLR ++ + + + IK K L Sbjct: 214 MNNTNT-LKHRCIIGLLYSAGLRRAELLNLNITDIDSKRMVVKIKNAKGNKDRISLLSPS 272 Query: 241 FMKLLAMTPIGKETFFINNDKQ---KMNATQFSIWFKAKATKAGV--NKSAHGVRKFSAT 295 +K L + Q K + T + A +AG+ + H +R AT Sbjct: 273 ILKDLQEYYKEYRPKKFLFEGQSGGKYSPTSVLNLISSAALRAGILKRVTPHMLRHSFAT 332 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADR 328 + G + G + E YT A+R Sbjct: 333 HLLENGTDIRHIQLLLGHSSTKTTEIYTHVANR 365 >gi|284799628|ref|ZP_05984435.2| tyrosine recombinase XerD [Neisseria subflava NJ9703] gi|284797559|gb|EFC52906.1| tyrosine recombinase XerD [Neisseria subflava NJ9703] Length = 292 Score = 129 bits (325), Expect = 5e-28, Method: Composition-based stats. Identities = 46/286 (16%), Positives = 106/286 (37%), Gaps = 20/286 (6%) Query: 69 TTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVES 125 ++ LI + +S L+ N+ S+ ++ + G D+ + V + Sbjct: 1 MSMDDLIDKLLESLWLQDRLSYNTLQSYRRDLVKVAARLTEGGQDWLSADEFALSDAVYA 60 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 +S + L++ + ++ W A NP ++ PK + + T+ + + Sbjct: 61 EGEKNTSQARALSACKRMYGWLEETGQRADNPTRFLKAPKSERKLPTLITEAQIDALLAE 120 Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-----------TG 230 G + + E + +GLR +++ + + + + SI+T Sbjct: 121 PDVETLHGLRDKALLEVMYATGLRVTEAVKLTLSDIDLHRGSIRTIGKGDKLRLVPLGQE 180 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGV 289 VE + L + + F++ + ++ + K A AG+ + S HG+ Sbjct: 181 AAYWVERYCNESRPLLLKNKICDEVFVSQKRSGISRQLAWMIVKEYAEAAGIASLSPHGL 240 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIK 334 R AT + G + G ++ + YT A+ R++ + Sbjct: 241 RHAFATHLVNHGVDLRSVQMMLGHSDINTTQIYTHVANIRLKNMVD 286 >gi|261250028|ref|ZP_05942605.1| tyrosine recombinase XerC [Vibrio orientalis CIP 102891] gi|260939532|gb|EEX95517.1| tyrosine recombinase XerC [Vibrio orientalis CIP 102891] Length = 310 Score = 129 bits (325), Expect = 5e-28, Method: Composition-based stats. Identities = 36/279 (12%), Positives = 99/279 (35%), Gaps = 22/279 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRS---GVESRK 127 + + + L+++++ +++ + + + + G +++++ +R Sbjct: 16 LERFYEYLRSEKGLSLHTQRNYKQQLETMAGHLAQLGLKEWQQVDAGWVRQLASKGMREG 75 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 PSS L+S+R F + + + ++ NP V P++K + +++ Q Sbjct: 76 MKPSSLATRLSSLRSFFDFMMLRGEMSANPAKGVSAPRKKRPLPKNLDVDEIGQLLEVNE 135 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243 + + R E + +GLR ++ V+ + + I+ V + Sbjct: 136 DDPLAIRDRAMMELMYGAGLRLAELVSINVKDVGLSSGEIRVVGKGDKERKVPFTGMAAE 195 Query: 244 LLAMTPIGKETFFINND--------KQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293 ++ + + +++ +++ K V + S H +R Sbjct: 196 WVSKWLRVRPSLANSDELGLFVSKLGVRISHRNVQKRMAEWGQKQAVASHISPHKLRHSF 255 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 AT ++ + G + + + YT D L Sbjct: 256 ATHMLESSNNLRAVQELLGHENISTTQIYTH-LDFQHLA 293 >gi|168185960|ref|ZP_02620595.1| phage integrase [Clostridium botulinum C str. Eklund] gi|169296151|gb|EDS78284.1| phage integrase [Clostridium botulinum C str. Eklund] Length = 366 Score = 129 bits (325), Expect = 5e-28, Method: Composition-based stats. Identities = 51/333 (15%), Positives = 110/333 (33%), Gaps = 36/333 (10%) Query: 44 IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103 +AL + E + T+K I + ++ + + ++ ++ + II Sbjct: 37 KKECEAALAELINQIEKGSIITNDKMTVKEYIEYWLETYPKNNCSPSTYKRYKFFIKDII 96 Query: 104 RKSGDFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159 G K+ I+ E R + ++ I+ + + K A + + + NPC Sbjct: 97 NYIGKHKLSKLNPMIIQKFYEDLLSDRNISNNTVIKTHRMLHLALKHAQQWQLINNNPCD 156 Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219 V PK + ++ W +++ + E A + +G R + C + Sbjct: 157 LVTPPKATKQEMKYWQPDEINIYLDILKEEF-LYPAIFLAIQTGCRVGELCAIKWSDVDL 215 Query: 220 NIFSIKTQKTGTIITV---------------------------ELPDGFMKLLAMTPIGK 252 +I+ KT I L ++ I Sbjct: 216 IDKTIRIDKTLQRIDCKLALKYPKTQNSIRTITLLETAITFLKNLKKNRIEKKLKYGIEL 275 Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATY 311 + D + ++ S F K + K H +R AT+ AG A + Sbjct: 276 DYVLCWEDGRPIDPHYISQHFPKLLDKYNLPKIRFHDLRHSHATLLLKAGVNAKIISKRL 335 Query: 312 GWKTVD-QAETYTKGADRIRLGIKNSRRISSVV 343 G TV +TY+ + ++ + ++ +++ Sbjct: 336 GHSTVAFTLDTYSHVST--KMQKEEMSKVENLL 366 >gi|91774554|ref|YP_544310.1| tyrosine recombinase XerC subunit [Methylobacillus flagellatus KT] gi|91708541|gb|ABE48469.1| tyrosine recombinase XerC subunit [Methylobacillus flagellatus KT] Length = 291 Score = 129 bits (325), Expect = 5e-28, Method: Composition-based stats. Identities = 39/278 (14%), Positives = 87/278 (31%), Gaps = 19/278 (6%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--- 128 ++ Y + + L++ + + + + + HIR + + Sbjct: 2 DVLQRYLEYLQFERGLSLLTVKHYRRDLELLFDLKSGMALDALQPSHIRRFIATLHGRGL 61 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + + + L+ R F + V++ NPC + PK + + Q E Sbjct: 62 SGKTIARHLSGWRGFFDYLVKRHGATCNPCHDMRAPKSPKSLPKALAIDQAVQLVDMKGE 121 Query: 189 G---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKL 244 + + E SGLR S+ + L + K V + ++ Sbjct: 122 DVLSIRDKAILELFYSSGLRLSEVTGLNIGDLNLHEGTVKVLGKGSKSRIVPIGRHAIQA 181 Query: 245 LAMTPIGKET--------FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 + ++ F+N + ++++ K A + G+ N H +R A Sbjct: 182 MQDWLAVRQPAISSDEQAVFLNRNGRRISGRAIQYRIKQWAIRRGISSNVHPHMLRHSFA 241 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 + + + G + + YT D L Sbjct: 242 SHVLQSSGDLRAVQEMLGHANISTTQVYTH-LDFQHLA 278 >gi|30021919|ref|NP_833550.1| site-specific tyrosine recombinase XerC [Bacillus cereus ATCC 14579] gi|29897475|gb|AAP10751.1| Integrase/recombinase (XerC/CodV family) [Bacillus cereus ATCC 14579] Length = 294 Score = 129 bits (325), Expect = 5e-28, Method: Composition-based stats. Identities = 42/284 (14%), Positives = 93/284 (32%), Gaps = 28/284 (9%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKH- 128 L Y + + + + S+++ + ++ G + +T +R + + Sbjct: 3 QLFVGYLQIE--RNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYADVRLYLTTLHDE 60 Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQF 182 S + ++S+R L+++ +R+ Y NP PK++ + E+ + Sbjct: 61 KLARKSVARKVSSLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELFEVS 120 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGF 241 + G + + E + +G+R S+ + + + +I K + Sbjct: 121 DTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFGSYA 180 Query: 242 MKLLAMTPIG------------KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287 L F+N + + KA + S H Sbjct: 181 QDSLITYIENGRKQLVNKTDEDSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRISPH 240 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +R AT D GA + G + + + YT + RL Sbjct: 241 MLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTH-VSKERL 283 >gi|228902334|ref|ZP_04066491.1| Tyrosine recombinase xerC [Bacillus thuringiensis IBL 4222] gi|228966776|ref|ZP_04127820.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar sotto str. T04001] gi|228792875|gb|EEM40433.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar sotto str. T04001] gi|228857303|gb|EEN01806.1| Tyrosine recombinase xerC [Bacillus thuringiensis IBL 4222] Length = 299 Score = 129 bits (325), Expect = 5e-28, Method: Composition-based stats. Identities = 42/287 (14%), Positives = 95/287 (33%), Gaps = 27/287 (9%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126 +K L+ + + + + S+++ + ++ G + +T +R + + Sbjct: 3 VKKLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYADVRLYLTTL 62 Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----M 179 S + ++S+R L+++ +R+ Y NP PK++ + E+ Sbjct: 63 HDEKLARKSVARKVSSLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELF 122 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238 + + G + + E + +G+R S+ + + + +I K + Sbjct: 123 EVSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFG 182 Query: 239 DGFMKLLAMTPIG------------KETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284 L F+N + + KA + Sbjct: 183 SYAQDSLITYIENGRKQLVNKTDEDSRMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRI 242 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 S H +R AT D GA + G + + + YT + RL Sbjct: 243 SPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTH-VSKERL 288 >gi|154491730|ref|ZP_02031356.1| hypothetical protein PARMER_01346 [Parabacteroides merdae ATCC 43184] gi|154087971|gb|EDN87016.1| hypothetical protein PARMER_01346 [Parabacteroides merdae ATCC 43184] Length = 302 Score = 129 bits (325), Expect = 5e-28, Method: Composition-based stats. Identities = 46/277 (16%), Positives = 96/277 (34%), Gaps = 25/277 (9%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVESR- 126 LI + + + + + ++ Q + ++ T +R+ + S Sbjct: 4 LIDSFLDYLRYERNYSEYTINAYFKDLQQFEDFVKEKKEGIFVPEEVDTDIVRNWIISLL 63 Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-----RPWTKEDM 179 K +P S + L+S++ FK+ ++Q +V++NP V PK K + + Sbjct: 64 DNKISPVSVNRKLSSLKSFFKFLMKQGFVSVNPLRFVTGPKTKKPLPTFVKEKDMEELLD 123 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239 EG + RL E L +G+R S+ + + I+ + Sbjct: 124 GDGFDEDFEGVRDRLVLEMLYDTGVRRSELVGLQDTDIDYDAMLIRVTGKRNKQRLIPFA 183 Query: 240 GFMKLLAMTPIG---------KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHG 288 +K L + FF+ + ++++ K + + S H Sbjct: 184 ERLKNLMLAYTEVRNREVDAGCGWFFVRKNGEQLSTGILYTIVKKRLSDIPTLAKCSPHV 243 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 +R AT + GA + + G ++ YT Sbjct: 244 LRHSFATSMLNNGAELNAVKELLGHSSLASTSIYTHT 280 >gi|114571348|ref|YP_758028.1| phage integrase family protein [Maricaulis maris MCS10] gi|114341810|gb|ABI67090.1| phage integrase family protein [Maricaulis maris MCS10] Length = 311 Score = 129 bits (325), Expect = 5e-28, Method: Composition-based stats. Identities = 38/291 (13%), Positives = 84/291 (28%), Gaps = 28/291 (9%) Query: 71 LKWLISEYRKSAH-WGSLAVNSRISFESYFDQI----IRKSGDFD----YRKITTKHIRS 121 ++ + L+ + +++ D G ++++ R+ Sbjct: 10 WTDALAAFLAHLSGERRLSPRTLDAYQRDLDNFGAFLCEHHGRLPDLMTLGDLSSRDFRA 69 Query: 122 GVESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + SR+ SA + L+++R F +A R+ V VE PK +P ++ Sbjct: 70 YMASRRRDGLSARSLARALSAIRTFFDYAKRRWGVDNAALSLVESPKLLRSAPKPVSESA 129 Query: 179 MQQFKSF-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 + + ++ L GLR S++ L K Sbjct: 130 AKSLLAETGARGGPDWVSARDNAVLLLLYGCGLRISEALSLTGNDLPIGDTLRIAGKGNK 189 Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKM-------NATQFSIWFKAKATKAGVN- 283 V + + ++ ++ +A + + G+ Sbjct: 190 TRIVPVLPAVAEAISQYVALCPFATKDDAALFRGVRGGNLSARSVQALMQELRGRLGLPE 249 Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 + H +R AT G + G ++ + Y L I Sbjct: 250 TATPHALRHAFATHLLAHGGDLRAIQELLGHASLSTTQIYADVESARLLSI 300 >gi|118579574|ref|YP_900824.1| tyrosine recombinase XerD [Pelobacter propionicus DSM 2379] gi|118502284|gb|ABK98766.1| tyrosine recombinase XerD subunit [Pelobacter propionicus DSM 2379] Length = 295 Score = 129 bits (325), Expect = 5e-28, Method: Composition-based stats. Identities = 47/283 (16%), Positives = 98/283 (34%), Gaps = 25/283 (8%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKH 128 + + LA N+R ++ + + G + ++T I S + + Sbjct: 3 EYLDLFLGYIAVERGLATNTRQAYSRDLGRYLDFLAERGKNEPAEVTAADIASFLVRLRD 62 Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 P+S + L+++R+ K+ + ++Y NP +E P+ + ++ + S Sbjct: 63 EGLAPASRARCLSAIRMFHKFLMIEKYCDDNPSAILEAPRTLHKLPAFLEPAEVDRLFSA 122 Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTII------- 233 + E + R E L +GLR S+ ++ + ++ + K Sbjct: 123 CAGTSGEDLRDRAMLELLYATGLRVSELVTITLRQVNLDVGYLMVVGKGDKERLVPIGES 182 Query: 234 ---TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHG 288 V + F++ M+ F + +A A + + S H Sbjct: 183 ARGRVRRYIEEARYRLDPQGRTPHLFLSRLGDAMSRQAFWNLIRKRAKLAAIAKDISPHT 242 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +R AT + GA + G + + YT R RL Sbjct: 243 LRHSFATHLLENGADLRSVQIMLGHADLSSTQIYTHVT-RERL 284 >gi|257056527|ref|YP_003134359.1| tyrosine recombinase XerD subunit [Saccharomonospora viridis DSM 43017] gi|256586399|gb|ACU97532.1| tyrosine recombinase XerD subunit [Saccharomonospora viridis DSM 43017] Length = 311 Score = 129 bits (325), Expect = 5e-28, Method: Composition-based stats. Identities = 51/283 (18%), Positives = 98/283 (34%), Gaps = 30/283 (10%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSGVESR 126 L+ +++ Y A N+ + + + D D R++ H+ S Sbjct: 9 LRVVVAAYVDHLTVERGTARNTVDGYARDLRRYLAHLADAGVTDLRQVARDHVVGFAASL 68 Query: 127 KHT--------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 +H PSSA + L+++R L ++A + + +P V P + D Sbjct: 69 RHGEGDRPPLAPSSAARALSAVRGLHRFAHAEGWTEEDPARDVRPPPLTRRLPKALPVAD 128 Query: 179 MQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTII 233 + + + + + R E L +G R S++ V + ++ K G Sbjct: 129 VLRLLNTPTGDDARSLRDRALLELLYSTGARISEATGLDVDDVDRAERTVVLDGKGGRQR 188 Query: 234 TVELPDGFMKLLAMTPIGKET-----------FFINNDKQKMNATQFSIWFKAKATKAGV 282 V + ++ L I F+N +++ K A +AG+ Sbjct: 189 LVPVGRPALEALDAYLIRARPALAAKGRGTGAVFLNARGGRLSRQGAWQVLKVAAERAGI 248 Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 S H +R AT + GA + G +V + YT Sbjct: 249 STPVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYT 291 >gi|300088077|ref|YP_003758599.1| tyrosine recombinase XerD [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527810|gb|ADJ26278.1| tyrosine recombinase XerD [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 303 Score = 129 bits (325), Expect = 5e-28, Method: Composition-based stats. Identities = 43/299 (14%), Positives = 100/299 (33%), Gaps = 31/299 (10%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRK-------SGDFDY-RKITTKHIRSGV-- 123 + + + N+R ++ + Q+ GD D + + S + Sbjct: 5 VDNFLNYLMVEKGFSGNTRDAYHNDLYQLADFSTRCLRQRGDQDLWDNFNRQDMLSYLLD 64 Query: 124 -ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED---- 178 + R + ++ ++ L + + F + + + + NP ++E PK + + Sbjct: 65 LKERNYAVTTVVRKLAAAKSFFSFLLEENKIRQNPTDNIESPKVGKPLPDAISVQQVKAL 124 Query: 179 -MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236 Q + E + R E L SG+R S+ + + + ++ + Sbjct: 125 LEQPTLAGGPEAKRDRAMLELLYASGMRVSELIGLDLADVDCDEEQVRCFGKGNKERIIP 184 Query: 237 LPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK-- 284 + ++++ F+N +++ K A AG+N Sbjct: 185 IHPQAARIVSEYIEEVRPRLVRSNDEKALFLNRRGERLTRQGLWQILKEYAVAAGLNGQV 244 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISSV 342 + H +R AT + GA + G + + YT +D IR ++ + Sbjct: 245 TPHTLRHSFATHMLNGGADLRSVQELLGHANISTTQIYTHLTSDHIRRAYDSAHPRARK 303 >gi|119944179|ref|YP_941859.1| phage integrase family protein [Psychromonas ingrahamii 37] gi|119862783|gb|ABM02260.1| phage integrase family protein [Psychromonas ingrahamii 37] Length = 337 Score = 129 bits (325), Expect = 5e-28, Method: Composition-based stats. Identities = 45/333 (13%), Positives = 112/333 (33%), Gaps = 23/333 (6%) Query: 17 RHGKIIYYFRK---GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 R GK +R G+RI + + +M+ L + + Sbjct: 7 RKGKKSITYRVEFMRDGKRISKSFKLKKE-AQTFMALLLVDNDLANSLTNHILTTLNFSD 65 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TPS 131 + + + + + R + G K+T + +++ ++ + P+ Sbjct: 66 AVKKLLDQDNGRDPSKHQR------LRYWVSVFGSLKVGKVTRQQVKAELKRLSNDKAPA 119 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED--MQQFKSFWSEG 189 + ++ ++ L+++ + + NP + + R + E+ + S+ Sbjct: 120 TLNRYKAALGSLYRYLSDEFDIDYNPVKGIRQYTENDARTRFLSDEELSILFAMVKQSKW 179 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAM 247 Q L + +G R S+ + + K G + L + L Sbjct: 180 DQLFLLVLMAITTGARRSEMLTLEWDDINFKTKTAHLPNTKNGEQRILTLTGDVITELMK 239 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHE 306 F + D + F I +++ + + + H +R A++ A GA+ E Sbjct: 240 YRCIGGYVFPHPDDPTIYFRNFDIHWQSALREGEITDFRFHDLRHTCASLLAMNGASLLE 299 Query: 307 LMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 + G K++ + Y+ L I++ ++ Sbjct: 300 IAQVLGHKSITMTQRYSH------LCIEHKAKL 326 >gi|313897322|ref|ZP_07830865.1| phage integrase, N-terminal SAM domain protein [Clostridium sp. HGF2] gi|312957692|gb|EFR39317.1| phage integrase, N-terminal SAM domain protein [Clostridium sp. HGF2] Length = 307 Score = 129 bits (325), Expect = 5e-28, Method: Composition-based stats. Identities = 43/307 (14%), Positives = 96/307 (31%), Gaps = 38/307 (12%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSG---- 122 L+ + +Y ++ + S+ + + G + I + I+S Sbjct: 3 LQEALQDYLHYIQAVDQKSLATIHSYTQDLQEYLSWLQMQGKTEMEDILPRDIQSFLSDM 62 Query: 123 ------VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + + SS L+S+ + ++ ++P + + K++ + + Sbjct: 63 EQGDIQEDGLCYKRSSVNHMLSSIHMFHRFISMNHPSILDPSIHLRGGKKEQKLPLYFNP 122 Query: 177 EDMQQFKSFWSE---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTI 232 D++ + + G + E L GLR S+ C + + ++ Sbjct: 123 HDIELLLDSFGQDAQGLYQKAILELLYGCGLRVSEVCELRINQVHLEQGYLRVIGKGDKE 182 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKM---------NATQFSIWFKAKATKAGVN 283 V + + M++L + ++ K + G++ Sbjct: 183 RMVPMHERCMRVLRTYLTQIRPTWEKRKSTRVFLNSRGNVLTRQYVHTLIKQRLQALGLD 242 Query: 284 --KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 SAH R AT D GA + G + + YT +R R+ Sbjct: 243 ERLSAHSFRHSFATHLLDGGADLRVVQELLGHSDIATTQIYTHVQNR---------RLKE 293 Query: 342 VVDSDDP 348 +D P Sbjct: 294 AIDQYHP 300 >gi|327402648|ref|YP_004343486.1| tyrosine recombinase XerD subunit [Fluviicola taffensis DSM 16823] gi|327318156|gb|AEA42648.1| tyrosine recombinase XerD subunit [Fluviicola taffensis DSM 16823] Length = 301 Score = 129 bits (324), Expect = 6e-28, Method: Composition-based stats. Identities = 55/290 (18%), Positives = 97/290 (33%), Gaps = 27/290 (9%) Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVES 125 T+K + Y K SLA NS +++ ++ + I T H++ V Sbjct: 5 ERTIKQFVH-YLKIE--RSLAENSIFAYQQDIAKLRDFCESYTLSPEHIQTGHLKQFVAE 61 Query: 126 ---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + S + ++ + F + V +E +P ++E PK + T E++ Sbjct: 62 LYDMGLSARSQARIISGWKQFFDFLVLEEIRKDDPSEALELPKIGRKLPEVLTIEEIDAL 121 Query: 183 KSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGV-QHLQNNIFSIKTQKTGTIITVE- 236 +EG + + E L G+R S+ F K V Sbjct: 122 IDAIDLSSNEGQRNKAILETLYSCGIRVSELVSLRFEDCFFEEGFIRVIGKGNKERLVPV 181 Query: 237 ----------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284 + L + ++ F+N ++ K A AG+ K Sbjct: 182 SPSVIEEVGEYVEHDRSNLLIKKGHEQFVFLNRRGAQLTRVMIFTIIKRLADLAGIKKNI 241 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGI 333 S H R AT + GA + G +++ E YT R +R I Sbjct: 242 SPHTFRHSFATHLIEGGANLRAIQDMLGHESITTTEIYTHLDQRFLREAI 291 >gi|255692650|ref|ZP_05416325.1| tyrosine recombinase XerC [Bacteroides finegoldii DSM 17565] gi|260621626|gb|EEX44497.1| tyrosine recombinase XerC [Bacteroides finegoldii DSM 17565] Length = 293 Score = 129 bits (324), Expect = 6e-28, Method: Composition-based stats. Identities = 40/276 (14%), Positives = 94/276 (34%), Gaps = 24/276 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSGVESRKH 128 LI + + + + + +++ Q+ G+FD ++ + IR + S Sbjct: 2 LIESFLDYLRYERNYSDKTVLAYGEDIRQLQEFAQEEYGEFDPLEVEAELIREWIVSLMD 61 Query: 129 TPSS---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + + L+++R +K+ +++ V ++P + PK K + +M + Sbjct: 62 KGYTSTSVNRKLSTLRTFYKFLLKKGEVTVDPLRKIVGPKNKKTLPVFLKENEMNKLLDE 121 Query: 186 W-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPD 239 +G + RL E +G+R S+ + + + T K + D Sbjct: 122 TDFGEGFKGCRDRLIIEMFYATGMRLSELIDLDDKDVDFSGSCLKVTGKRNKQRLIPFGD 181 Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQ---------FSIWFKAKATKAGVNK-SAHGV 289 + + + +++ + + A + K S H + Sbjct: 182 ELRDWMLGYIDVRNEMIPERSEAFFVRENGERLYKNLVYNLVKRNLSKVATLKKKSPHVL 241 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 R AT + A + G +++ E YT Sbjct: 242 RHTFATTMLNNNAELGAVKELLGHESITTTEIYTHA 277 >gi|224824765|ref|ZP_03697872.1| tyrosine recombinase XerD [Lutiella nitroferrum 2002] gi|224603258|gb|EEG09434.1| tyrosine recombinase XerD [Lutiella nitroferrum 2002] Length = 296 Score = 129 bits (324), Expect = 6e-28, Method: Composition-based stats. Identities = 42/267 (15%), Positives = 89/267 (33%), Gaps = 22/267 (8%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-----KHTPSSAIQFLTSM 140 L+ N+ ++ ++ + + + + + + ++ + +++M Sbjct: 20 GLSRNTLSAYRRDLLKLGARLDEEGGVHLVEAGVADLQRALLLGVEQEKATTRARLVSAM 79 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAF 196 R +++ +P ++ERPK + +++ + G + R Sbjct: 80 RRFYQYLHASGQRPDDPSAALERPKHGQPLPKSLSEKHVVALLEAPDVATPLGLRDRAML 139 Query: 197 EFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMT------- 248 E L +GLR S+ +Q + + + K G V + + L Sbjct: 140 EVLYATGLRVSELVGLTLQQVDLTSGVVMTLGKGGKERLVPMGEVAQDWLGRYLATGRPA 199 Query: 249 ---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATA 304 + E F+ K M A + G+ S H +R AT + GA Sbjct: 200 LLTGVPCEQVFVTRLKAGMTRQMAWHLISGYARRQGLPPVSPHTLRHAFATHLVNHGADL 259 Query: 305 HELMATYGWKTVDQAETYTKGADRIRL 331 + G + + YT A R RL Sbjct: 260 RVVQLLLGHSDISTTQIYTHVA-RERL 285 >gi|183221728|ref|YP_001839724.1| tyrosine recombinase xerD [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911803|ref|YP_001963358.1| site-specific recombinase XerD [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167776479|gb|ABZ94780.1| Site-specific recombinase XerD [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167780150|gb|ABZ98448.1| Tyrosine recombinase xerD [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 302 Score = 129 bits (324), Expect = 6e-28, Method: Composition-based stats. Identities = 45/276 (16%), Positives = 95/276 (34%), Gaps = 24/276 (8%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVES---RKHT 129 EY S L+ NS S+ ++ ++ I +E RK + Sbjct: 16 FQEYL-SVE-KGLSDNSIYSYGYDLNKFAIFLEKEHINFLEVKANDIMRFLEEERERKIS 73 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + + + ++R +K+ ++ + NP +E P+ T+ ++++ E Sbjct: 74 AKTLAREVVAIRQFYKYLRDEKRLDSNPTEKIETPEVARTIPDYLTQAEIEELFRNIKED 133 Query: 190 ----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELPDGFMKL 244 + + FE L SGLR S++C + + N+ K G V + +++ Sbjct: 134 NLYELRDKCIFELLYSSGLRISEACNLKMTDIDMENMTITVEGKGGRQRLVPFGEKSLEI 193 Query: 245 LAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292 L + F++ +N + + K + H +R Sbjct: 194 LKRYLVESRTEILKKRTCDFVFVSKKGSYINRKSVWRLLNHYIKRTKIKKKVTPHTLRHS 253 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 AT + A + G + + YT A++ Sbjct: 254 FATHLLENHADLKSVQELLGHIDISTTQIYTHMANK 289 >gi|89894917|ref|YP_518404.1| hypothetical protein DSY2171 [Desulfitobacterium hafniense Y51] gi|89334365|dbj|BAE83960.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 290 Score = 129 bits (324), Expect = 6e-28, Method: Composition-based stats. Identities = 42/266 (15%), Positives = 88/266 (33%), Gaps = 12/266 (4%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG-VESRKHTPSSA 133 I + L+ + + +ITT +R E + SS Sbjct: 17 IQLFLAGKKLEGLSDLTLKGYGIELRIFAEHV-HKAADEITTADLRLYLGEFKGLRLSSI 75 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193 L+ ++ F W ++ + +P ++ PK++ + + E+++ + + R Sbjct: 76 SGKLSVLKSFFSWLAAEDILLKDPSRKIKPPKKEKRIPKALSIEELEMLREAC-ITPRER 134 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMTPIGK 252 E + +G R S+ + + S K TV M L + + Sbjct: 135 ALIEVMYATGCRLSEVQKMNRDDVDYQTMSASVIGKGNKERTVYFSYKAMYHLKKYLMRR 194 Query: 253 E------TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304 ++++A K A ++ V K H +R AT+ + GA Sbjct: 195 ADEAEALFITERRPYRRLSARGIQREVKLIADRSEVRKNVHPHVLRHTFATLMLNNGADI 254 Query: 305 HELMATYGWKTVDQAETYTKGADRIR 330 + A G + + Y + D + Sbjct: 255 ASVQALLGHEDPGTTQIYAQSTDERK 280 >gi|251773301|gb|EES53851.1| phage integrase family protein [Leptospirillum ferrodiazotrophum] Length = 347 Score = 129 bits (324), Expect = 6e-28, Method: Composition-based stats. Identities = 55/337 (16%), Positives = 122/337 (36%), Gaps = 14/337 (4%) Query: 17 RHGKIIYYFRKGHGRRIRLPYPHE-STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75 + G + + G++IR + G + ++ + + TL L Sbjct: 5 KRGALWWMRFSVQGKQIRRSTGTSERKLADKVYKKVLGEIAEGDWFDRLPGEEKTLSELF 64 Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSS 132 +Y + + + S I ++ +++++ GD +I T+ I + R+ P+S Sbjct: 65 DKYLEEHSKPNKSSKSYIRDKAISLRMLKEFGDVTLIEIGTEQIFDYKKKRREENLAPAS 124 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 + + +R F+ AV ++ +NP + R K K R T E+ ++ E + Sbjct: 125 LNKEIAFLRHAFEMAVLWGWLEVNPVSRIPREKVKNRMERWLTGEEEERLLKACPEWLRD 184 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQN------NIFSIKTQKTGTIITVELPDGFMKLLA 246 + F L +G R ++ + + + + D ++ Sbjct: 185 MVIFA--LNTGFRQNEMLSLTWNQVDWDRKAILFWDQKNNGRDTVPVNEKAIDVLKRIGK 242 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAH 305 + + F+ ++ A F KA + N H +R AT AG + Sbjct: 243 VKSLSSGHVFLTSNGTPFIARNVVRSFSLALEKAKITNFRWHDLRHTFATRLVHAGVDLY 302 Query: 306 ELMATYGWKTVDQAETYTKG-ADRIRLGIKNSRRISS 341 + W+++ Y + +R G++ R++S Sbjct: 303 TVQRLGRWRSLSMVMRYAHHNLESLRTGMEAVNRLAS 339 >gi|212715594|ref|ZP_03323722.1| hypothetical protein BIFCAT_00493 [Bifidobacterium catenulatum DSM 16992] gi|212660961|gb|EEB21536.1| hypothetical protein BIFCAT_00493 [Bifidobacterium catenulatum DSM 16992] Length = 308 Score = 129 bits (324), Expect = 6e-28, Method: Composition-based stats. Identities = 47/288 (16%), Positives = 92/288 (31%), Gaps = 36/288 (12%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVES--RK 127 Y K+ L+ N+R ++ ++ + + G + ++T + +R + +K Sbjct: 8 EAFDTYLKAN--RGLSENTRKAYRGDVEECLLALERLGCRNLNEVTIEDLRMWMAESSKK 65 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 H SS + ++R F W +P + PK ++ +Q Sbjct: 66 HAKSSMARKTVAVRGFFAWTHEHGVTTTDPACVLMTPKIPDTLPDVLSESQAEQLMERVD 125 Query: 188 EGS-----------------QPRLAFEFLLYSGLRCSDSCRAG-VQHLQNNIFSIKTQKT 229 E S + E L +G+R ++ + +N T K Sbjct: 126 EDSETSQPKERTMKQQAIELRDAAMLELLYATGMRVAELVGLDVPDVVFSNRTVKVTGKG 185 Query: 230 GTIITVELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATK 279 + K + F+ ++++ A A Sbjct: 186 NKQRVMPFGAPAQKAIRRWLDDGRPLLVGEQSAAALFLGRQGKRIDQRMVRRVVHACARD 245 Query: 280 AGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 AGV S H +R +AT D GA E+ G ++ + YT + Sbjct: 246 AGVPDISPHALRHSAATHMLDGGADLREVQELLGHSSLKTTQRYTHVS 293 >gi|269213994|ref|ZP_05983350.2| tyrosine recombinase XerD [Neisseria cinerea ATCC 14685] gi|269144753|gb|EEZ71171.1| tyrosine recombinase XerD [Neisseria cinerea ATCC 14685] Length = 308 Score = 129 bits (324), Expect = 6e-28, Method: Composition-based stats. Identities = 49/277 (17%), Positives = 99/277 (35%), Gaps = 19/277 (6%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKH 128 + LI ++ L+ N+ S+ ++I R+ R + + V Sbjct: 20 EDLIDRLLETLWLDRRLSRNTLESYRRDLEKIARRLSLCGQTLRDADESDLAAAVYVAGE 79 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-- 186 SS + L++ + L+ W R+ NP ++ PK T++ + + S Sbjct: 80 ERSSQARALSACKRLYIWMEREGMRTDNPTRLLKPPKIDKNIPTLITEQQISRLLSAPDT 139 Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-----------KTQKTGTII 233 G + + E + +GLR S++ R +L + I ++ Sbjct: 140 DTPHGLRDKALLELMYATGLRVSEAVRLSFGNLDLDRGCITTLGKGNKQRIVPMGRESVY 199 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKF 292 VE + L + + F++ K ++ + K A++AG+ S H +R Sbjct: 200 WVERYYKEARPLLLKGRSCDALFVSQKKTGISRQLAWMIVKEYASQAGIEHISPHSLRHA 259 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT G + G ++ + YT A+ Sbjct: 260 FATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANVR 296 >gi|323701841|ref|ZP_08113511.1| tyrosine recombinase XerC [Desulfotomaculum nigrificans DSM 574] gi|323533145|gb|EGB23014.1| tyrosine recombinase XerC [Desulfotomaculum nigrificans DSM 574] Length = 300 Score = 129 bits (324), Expect = 6e-28, Method: Composition-based stats. Identities = 43/283 (15%), Positives = 96/283 (33%), Gaps = 27/283 (9%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRS--- 121 L+ + + + ++ +++ + I +I ++ R+ Sbjct: 4 LVDHFINFLKVQKNFSDHTIEAYQKDLFEGIDFFSTVLNVCDEKLHPSQIDSRLFRNFLS 63 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 ++ R S+ + L + R F++ R+ V NP L + PK++ + +++ ++ Sbjct: 64 HMQERNLQRSTIARRLAAWRTFFRFLYREGLVQTNPLLRMANPKQEKRLPKFLYQDEAKE 123 Query: 182 FKS---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVEL 237 G + R E L +G+R S+ + HL + ++ V + Sbjct: 124 LVESPGNTPLGVRDRSLLELLYATGIRVSELVALDLYHLDLSRGYLRVWGKGSKERLVPI 183 Query: 238 PDGFMKLLAMT---------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286 D + L F+N +++ + G+ K S Sbjct: 184 HDRAVAALKRYLTEARPKLAQPDCPAVFVNYKGSRLSDRGVRKLIDKYCQQVGLTKNISP 243 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 H +R AT D GA + G ++ + YT + Sbjct: 244 HVIRHSFATHLLDNGADLRSVQELLGHVSLSTTQIYTHVTKQK 286 >gi|295085443|emb|CBK66966.1| tyrosine recombinase XerC subunit [Bacteroides xylanisolvens XB1A] Length = 293 Score = 129 bits (324), Expect = 6e-28, Method: Composition-based stats. Identities = 46/276 (16%), Positives = 98/276 (35%), Gaps = 24/276 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSGVESRKH 128 LI + + + + + +++ Q+ G F+ ++ + IR + S Sbjct: 2 LIESFLDYLQYERNYSEKTVLAYGEDIKQLQEFAQEEYGKFNPLEVEAELIREWIVSLMD 61 Query: 129 TPSS---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + + L+S+R +K+ +RQ I+P ++ PK K + +M + Sbjct: 62 KGYTSTSVNRKLSSLRTFYKYLLRQGETTIDPLRKIKGPKNKKPLPVFLKENEMNRLLDE 121 Query: 186 W-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 +G + RL E +G+R S+ + + + +K + Sbjct: 122 TDFGEGFKGCRDRLIIEMFYATGMRLSELIGLDNKDVDFSASLLKVTGKRNKQRLIPFGD 181 Query: 241 FMKLLAMTPIGKET---------FFINNDKQKMNATQFSIWFKA-KATKAGVNK-SAHGV 289 ++ L + I FFI + +++ K + A + K S H + Sbjct: 182 ELQELMLEYISVRNETIPERSEAFFIRENGERLYKNLVYNLVKRNLSKVATLKKKSPHVL 241 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 R AT + A + G +++ E YT Sbjct: 242 RHTFATTMLNNEAELGAVKELLGHESITTTEIYTHA 277 >gi|242280181|ref|YP_002992310.1| integrase family protein [Desulfovibrio salexigens DSM 2638] gi|242123075|gb|ACS80771.1| integrase family protein [Desulfovibrio salexigens DSM 2638] Length = 319 Score = 129 bits (324), Expect = 6e-28, Method: Composition-based stats. Identities = 41/264 (15%), Positives = 86/264 (32%), Gaps = 24/264 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVESRKHTP---SSAIQF 136 + + S+ Q KIT+ +R+ + S+ + Sbjct: 26 KRSSAATLRSYAKDISQFEEFLETRKKTLAVPEKITSDLVRAFLAKLHGQRLAKSTMSRK 85 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQP 192 L+S+R FK+ + ++ +P + + PK++ R + + Sbjct: 86 LSSLRSFFKYMTKHRFIQNDPMVGIRNPKQEIRHPRSLNVDQAVNLMDAHVGDEPADKRD 145 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIG 251 E L SGLR S++ + + + ++ L D K + Sbjct: 146 LALAEMLYGSGLRVSEAITLDLFDIDTSSGVVRVSGKGNKERLSPLSDAACKAVNDYLAV 205 Query: 252 K---------ETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADA 300 + + F+ N ++N Q + A AG++ H +R A+ + Sbjct: 206 RAELGPALEEQALFVGNRGGRINRRQVNRILARMAEGAGLHEGVHPHMLRHSFASHMLQS 265 Query: 301 GATAHELMATYGWKTVDQAETYTK 324 GA + G + + + YT Sbjct: 266 GADMRSVQELLGHEHLSTTQRYTH 289 >gi|303245447|ref|ZP_07331731.1| tyrosine recombinase XerD [Desulfovibrio fructosovorans JJ] gi|302493296|gb|EFL53158.1| tyrosine recombinase XerD [Desulfovibrio fructosovorans JJ] Length = 307 Score = 129 bits (324), Expect = 6e-28, Method: Composition-based stats. Identities = 45/281 (16%), Positives = 87/281 (30%), Gaps = 21/281 (7%) Query: 74 LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTP 130 + Y + LA +S ++ + + D +T + + + Sbjct: 15 WVENYLEHLIVAKGLAEHSIKAYSTDITDFLIFLNDHAGSLETVTDDTLFLYLMHLRSRG 74 Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 S + L+++R F +A + ++ +P +E PK +++D+ + Sbjct: 75 LASRSLARHLSALRGFFAYAAGEGWLPESPAALIENPKLPRLLPDVLSRDDVARLLDAPD 134 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCR-AGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242 G + R E L +GLR S+ A K + + Sbjct: 135 TATPLGYRDRTMLELLYAAGLRVSELIGLALTDFDAQAGLLRVFGKGSKERLIPIHALAQ 194 Query: 243 KLLAMTPIGKETFFINNDKQKM--------NATQFSIWFKAKATKAGV--NKSAHGVRKF 292 + L+ F ++ + K A AG+ + S H +R Sbjct: 195 EFLSTYIQTIRGAFHPKEQFVFLNRSGRGLSRQAVWKGIKRHALVAGISLHISPHSLRHS 254 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 AT D GA + G + E YT L + Sbjct: 255 FATHLLDGGADLRTVQTLLGHADISATEIYTHVQAERLLAV 295 >gi|293400627|ref|ZP_06644772.1| integrase/recombinase XerD [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305653|gb|EFE46897.1| integrase/recombinase XerD [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 303 Score = 129 bits (324), Expect = 6e-28, Method: Composition-based stats. Identities = 43/296 (14%), Positives = 89/296 (30%), Gaps = 22/296 (7%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGVESRKH 128 +Y + ++ + S+ + + G +T ++ ++ +K Sbjct: 5 DAFEDYLHYIQVVENKSLATVASYRNDLKEYLAFLDAHGFTAIEDVTYMDLQDFLKEQKV 64 Query: 129 TP--SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 SS +TS+R+ ++ + L + K + + D+++ + Sbjct: 65 KKKTSSVNHMITSLRMFHRYLTMTYPKIPDATLHICSSKTAKKLPTYFNVADIERLLDSF 124 Query: 187 SEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFM 242 + + E L GLR S+ + K V + + Sbjct: 125 QDSDMDIFHKALLEVLYGCGLRVSELTHLRLNMTHLEQGFLKVLGKGEKERMVPMHQRSV 184 Query: 243 KLLAMTPIGKETFFINNDK---------QKMNATQFSIWFKAKATKAGVN--KSAHGVRK 291 L ++ Q ++ K+K T G++ SAH R Sbjct: 185 HALQQYLEFVRPQWVKQRSPFVFLNSRGQNISRQYVHNLIKSKLTALGLDERLSAHSFRH 244 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347 AT D GA + G + + YT + RL + + DD Sbjct: 245 SFATHLLDGGADLRVVQELLGHADIATTQIYTHIQN-KRLQDAYASFHPRSKEEDD 299 >gi|327395985|dbj|BAK13407.1| tyrosine recombinase XerC [Pantoea ananatis AJ13355] Length = 301 Score = 129 bits (324), Expect = 6e-28, Method: Composition-based stats. Identities = 39/282 (13%), Positives = 87/282 (30%), Gaps = 21/282 (7%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR---KITTKHIRSGVESR 126 L+ + + + L+ + S+ ++ + + ++ +RS Sbjct: 5 LQETVDGFLRHLKVERQLSPLTLSSYARQLAALVTIADEMKISAWSQLDPAMVRSMAARS 64 Query: 127 KHTPSSAIQ---FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + +A L+++R W V ++ +A NP + P+ + +D+ Q Sbjct: 65 RRAGLAASSLALRLSALRSFLDWQVSRDMLAANPAKGIATPRNGRHLPKNIDVDDVNQLL 124 Query: 184 SFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD 239 + R E + GLR S+ +H+ K V + Sbjct: 125 EIDLTDPLAIRDRTMLEVMYGGGLRLSELVNMDCRHVDLEAGEVWVLGKGSKERRVPIGR 184 Query: 240 GFMKLLAMTPIGKETFFINN-------DKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290 + + + F + +++A F K G+ + H +R Sbjct: 185 TAVSWIQQWLPLRTAFNPGDDALFLSSRGSRISARNVQKRFAEWGIKQGISSHIHPHKLR 244 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 AT ++ + G + + YT D L Sbjct: 245 HSFATHLLESSGDLRAVQELLGHANLSTTQIYTH-LDFQHLA 285 >gi|269215605|ref|ZP_06159459.1| tyrosine recombinase XerD [Slackia exigua ATCC 700122] gi|269131092|gb|EEZ62167.1| tyrosine recombinase XerD [Slackia exigua ATCC 700122] Length = 307 Score = 129 bits (324), Expect = 6e-28, Method: Composition-based stats. Identities = 48/290 (16%), Positives = 91/290 (31%), Gaps = 26/290 (8%) Query: 73 WLISEY-RKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSG---VES 125 + Y + A +V++ + + + G +T + IRS Sbjct: 15 DALDSYCVERASVRGDSVHTVRGYRNDLLDFGRWAARHGIVPL-DVTYRQIRSYLGEQNQ 73 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + + + L+S+R F+W V+ +P V PK R DM + + Sbjct: 74 AGYARRTINRRLSSLRGFFRWLNVTGRVSGDPVGVVSGPKLSKGLPRFIPASDMARILNV 133 Query: 186 WS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPD 239 E + + EFL SG R S++ + + ++ V L D Sbjct: 134 HHSSSEPEDMRNQAILEFLYASGARISEASGLLASDVDFSSRQVRVMGKGSKERIVPLHD 193 Query: 240 GFMKLLAMTPIGKETFFINNDKQK----------MNATQFSIWFKAKATKAGVN--KSAH 287 + + + M+ FK AGV+ + H Sbjct: 194 LAVSSMRAYAEHARPQLQGSGSCPRFFVSSRGRAMSTDALRKMFKRTLASAGVDGTYTPH 253 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 +R AT D GA + G ++ + YT + + ++ Sbjct: 254 DMRHTFATDLLDGGADLRSVQEMLGHASLSTTQIYTHVSSERLRSVHHAA 303 >gi|296121441|ref|YP_003629219.1| tyrosine recombinase XerD [Planctomyces limnophilus DSM 3776] gi|296013781|gb|ADG67020.1| tyrosine recombinase XerD [Planctomyces limnophilus DSM 3776] Length = 315 Score = 129 bits (324), Expect = 6e-28, Method: Composition-based stats. Identities = 42/263 (15%), Positives = 87/263 (33%), Gaps = 23/263 (8%) Query: 86 SLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTS 139 LA N+ IS+E + G IT + + + K S+ + L S Sbjct: 37 GLARNTVISYERDIKRFSDWFHESGVVRVTDITLQDLSGYLRYLHELKLATSTIARHLVS 96 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLA 195 +++ F++ + + + + + PK + +++ + + + R Sbjct: 97 LKMFFRYLMLEGILKESVADLLNSPKLWEHLPKVLSEDAVNRLLDAPMHQDLNPYRDRAL 156 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT------ 248 L +G R S+ C ++ LQ + + V L + L Sbjct: 157 LAVLYATGCRASEVCSLKMRDLQLDEGFCRCVGKGNKERLVSLNPVAVSALKTYLARERP 216 Query: 249 ----PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGA 302 F + + ++ Q K A++ G++ + H +R AT GA Sbjct: 217 ARAGTNLDSPVFTSRSGRSIDRIQVWKLVKRYASRIGLSDAVTPHTLRHSFATHMLANGA 276 Query: 303 TAHELMATYGWKTVDQAETYTKG 325 L G ++ + YT Sbjct: 277 EIRALQELLGHASIRTTQIYTHV 299 >gi|297617131|ref|YP_003702290.1| tyrosine recombinase XerC [Syntrophothermus lipocalidus DSM 12680] gi|297144968|gb|ADI01725.1| tyrosine recombinase XerC [Syntrophothermus lipocalidus DSM 12680] Length = 306 Score = 129 bits (324), Expect = 7e-28, Method: Composition-based stats. Identities = 36/305 (11%), Positives = 92/305 (30%), Gaps = 40/305 (13%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD--------YRKITTKHIRSGVES 125 + + + + + + S ++ + D + + + +R + Sbjct: 9 VKRFLEHLEIEKGASPLTLAGYRSDLERFVAHFADKRGIGPEEIGFEVLDPRTVREYLAH 68 Query: 126 RKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + S+ + + ++R K+ + + +NP +V P+R+ R ++++ Sbjct: 69 LQECGLKRSTMARKVAALRSFGKYLCSSQIIEVNPVATVSTPRREKRLPRFLYSQEVEAL 128 Query: 183 KSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAG-VQHLQNNIFSIKTQKTGTIITVEL 237 + G + + E L +G+R + F K V + Sbjct: 129 LAAPDGGDVLGLRDQAILELLYATGIRVGELVGLDLPDFDAEERFIRVMGKGSKERIVPV 188 Query: 238 PDGFMKLLAMT------------PIGKETFFINNDKQKMNATQFSIWFKAKAT--KAGVN 283 ++ + + F+N +++A + Sbjct: 189 GARAVEAMNRYLNSSRRVLAARKQGTENAIFLNRHGTRLSARGVRNIVNRYVEEIALRLK 248 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343 S H +R AT + GA + G + + YT + R+ ++ Sbjct: 249 ISPHTLRHTFATHLLNGGADLRSVQELLGHARLSTTQVYTHVT---------AERLKNIY 299 Query: 344 DSDDP 348 D P Sbjct: 300 DDKFP 304 >gi|163784459|ref|ZP_02179335.1| Phage integrase [Hydrogenivirga sp. 128-5-R1-1] gi|159880274|gb|EDP73902.1| Phage integrase [Hydrogenivirga sp. 128-5-R1-1] Length = 283 Score = 129 bits (324), Expect = 7e-28, Method: Composition-based stats. Identities = 42/282 (14%), Positives = 92/282 (32%), Gaps = 12/282 (4%) Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 K L I EY + + + + + ++ GD + I KH+ + Sbjct: 10 SEGKKIKLSEFIEEYLEWCR-ENRSDETFKKAQYVLNKFKDYIGDIYVKSINKKHMDDYI 68 Query: 124 ESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + ++A + +++ AV EYV +P + K + + + + ++ Sbjct: 69 SKLLSEGLSRTTANIHIRTIKSALTKAVEWEYVKEHPLRGYKLLKIQQKPPKFLLPQQIK 128 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 + + E + F +Y+G+R + R +H+ N I +K+ + + +P Sbjct: 129 EVEKIIDEEIWQFVFRLF-IYTGMRLGEITRLKWEHINLNREIITVEKSKSFHSRVIPIH 187 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSATISAD 299 + K KAG + H +R A++ Sbjct: 188 P----TLKKDIIRYKKDIGKVVPFKRRYIQERLKNYFRKAGYPDLRVHDLRHTFASLMVM 243 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 AG + G ++ E Y A + ++ Sbjct: 244 AGVDLKTVQELLGHQSYRTTEIYAHLAP--HHLKEAIKKFPG 283 >gi|305681436|ref|ZP_07404243.1| tyrosine recombinase XerD [Corynebacterium matruchotii ATCC 14266] gi|305659641|gb|EFM49141.1| tyrosine recombinase XerD [Corynebacterium matruchotii ATCC 14266] Length = 305 Score = 129 bits (324), Expect = 7e-28, Method: Composition-based stats. Identities = 46/296 (15%), Positives = 91/296 (30%), Gaps = 34/296 (11%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126 L +++ + + N+ ++ + + G D ++TT + + V Sbjct: 2 LDDVVAAWLTHLKVEKGYSSNTLSNYRRDLYRYVTWLHAVGVTDLNQVTTSQVEAYVTEL 61 Query: 127 KHT----------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + SSA + L R L K+A+ + V + V P T Sbjct: 62 RRGDPDRNIKPLAVSSAARALIVARGLHKFALLEGLVTTDVAADVSPPATGRHLPDVLTI 121 Query: 177 -------EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229 + + + + R E L +G R S+ V + +N ++ Sbjct: 122 AEVTQLIDAIPTDDTASPIDLRDRALIELLYGTGARISEITALTVDNFHDNDGMLRITGK 181 Query: 230 -GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM---------NATQFSIWFKAKATK 279 V + M + + F + + K A + Sbjct: 182 GNKQRLVPVGSQAMAAVDQYLVRARPVFATGASHALLLNTRGRTLSRQSAWAVLKTAAAR 241 Query: 280 AGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLG 332 A + + S H +R AT + GA + G +V + YT A+ +R Sbjct: 242 AHITKDISPHTLRHSFATHLLEGGAGERVVQELLGHSSVTTTQIYTHVSAENLRQA 297 >gi|160938560|ref|ZP_02085913.1| hypothetical protein CLOBOL_03456 [Clostridium bolteae ATCC BAA-613] gi|158438489|gb|EDP16247.1| hypothetical protein CLOBOL_03456 [Clostridium bolteae ATCC BAA-613] Length = 331 Score = 129 bits (324), Expect = 7e-28, Method: Composition-based stats. Identities = 40/261 (15%), Positives = 87/261 (33%), Gaps = 12/261 (4%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES----RKHTP 130 + + + + + ++ ++ + ++ G ++IT + + + R+ + Sbjct: 56 LDIFIGKMRFENYSASTVNQYQRFLTDLLVYVG-KPVQEITGEDVVECLNYYEQVRQIST 114 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 S+ F + + Y+ NP +V+ K E T ++++ + Sbjct: 115 STKDHKRRIASSFFAFLHDRGYIRKNPMATVDPIKYVAEIREALTSREVEKLRIACGGNV 174 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFMKLLAMTP 249 + E L +G R S+ V+ + + K V D M+ L Sbjct: 175 RDNAVLELFLATGCRVSEVVGMHVEDIDMQVGCVKVLGKGQKERIVFFGDRAMEYLERYL 234 Query: 250 IGKE----TFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGAT 303 G+ Q + + A +AG+ K H +R AT + + G Sbjct: 235 DGRRAGAVILSSRAPHQGLKKNALENIIRRIANQAGLGKRVFPHLLRHTFATRALNKGMP 294 Query: 304 AHELMATYGWKTVDQAETYTK 324 L G +V+ Y K Sbjct: 295 LPTLCDLMGHASVETTRIYAK 315 >gi|313674963|ref|YP_004052959.1| tyrosine recombinase xerd [Marivirga tractuosa DSM 4126] gi|312941661|gb|ADR20851.1| tyrosine recombinase XerD [Marivirga tractuosa DSM 4126] Length = 299 Score = 129 bits (324), Expect = 7e-28, Method: Composition-based stats. Identities = 44/281 (15%), Positives = 94/281 (33%), Gaps = 28/281 (9%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI--------RS 121 ++EY+ SLA N+ ++ ++ + D R + + Sbjct: 3 WDVFLTEYKNYLQLERSLAENTVAAYVHDVIKLKQFL-DISNRNVDPLQVSSTDLHNFLE 61 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 V T + + ++ ++ +K+ V ++ + NP +E PK + + ++++Q Sbjct: 62 YVNELGMTVHTQARVVSGIKGFYKYLVFEDIIEDNPAELLEAPKLGRKLPDVLSFDEIEQ 121 Query: 182 FKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236 S G + E L SGLR ++ + + ++ ++ V Sbjct: 122 IISSIDRSTANGQRDLTMLEVLYSSGLRVTELTSLKISNTYFDLGFLRIIGKGSKERLVP 181 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKM-----------NATQFSIWFKAKATKAGVNK- 284 + K L + + + + K + AG+ K Sbjct: 182 MGKSAAKQLKIYLTEVRVHQKPKPEARDIVFLNRFGGAISRISVFTMIKKQCVMAGIRKN 241 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 S H R AT + GA + G +++ E YT Sbjct: 242 VSPHTFRHSFATHLIEGGADLRAVQEMLGHESITTTEIYTH 282 >gi|225021521|ref|ZP_03710713.1| hypothetical protein CORMATOL_01542 [Corynebacterium matruchotii ATCC 33806] gi|224945903|gb|EEG27112.1| hypothetical protein CORMATOL_01542 [Corynebacterium matruchotii ATCC 33806] Length = 305 Score = 129 bits (324), Expect = 7e-28, Method: Composition-based stats. Identities = 47/296 (15%), Positives = 91/296 (30%), Gaps = 34/296 (11%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126 L +++ + + N+ ++ + + G D ++TT + + V Sbjct: 2 LDDVVAAWLTHLKVEKGYSSNTLSNYRRDLYRYVTWLHAVGVTDLNQVTTSQVEAYVTEL 61 Query: 127 KHT----------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + SSA + L R L K+A+ + V + V P T Sbjct: 62 RRGDPDRNIKPLAVSSAARALIVARGLHKFALLEGLVTTDVAADVSPPATGRHLPDVLTI 121 Query: 177 EDMQQFKSFWS-------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229 ++ Q + R E L +G R S+ V + +N ++ Sbjct: 122 AEITQLIDAIPTDDTASPIDLRDRALIELLYGTGARISEITALTVDNFHDNDGMLRITGK 181 Query: 230 -GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM---------NATQFSIWFKAKATK 279 V + M + + F + + K A + Sbjct: 182 GNKQRLVPVGSQAMAAVDQYLVRARPVFATGASHALLLNTRGRTLSRQSAWAVLKTAAAR 241 Query: 280 AGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLG 332 A + + S H +R AT + GA + G +V + YT A+ +R Sbjct: 242 AHITKDISPHTLRHSFATHLLEGGAGERVVQELLGHSSVTTTQIYTHVSAENLRQA 297 >gi|257063755|ref|YP_003143427.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM 20476] gi|256791408|gb|ACV22078.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM 20476] Length = 313 Score = 129 bits (324), Expect = 7e-28, Method: Composition-based stats. Identities = 46/288 (15%), Positives = 103/288 (35%), Gaps = 25/288 (8%) Query: 75 ISEY-RKSAHWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESR---KH 128 + +Y + A + + ++ ++ R + D +IT + +R + ++ Sbjct: 23 VDDYCLEMAQVKNASAHTVRNYRIDLLDFGRWAVRCHVDPMRITYRQVRRYLGELTQAQY 82 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-- 186 + + + L++++ LF+W + +P ++ PK R DM + + + Sbjct: 83 SRKTINRRLSAIKGLFRWMNLTGVIDSDPVSVIQGPKSAKGLPRMIPASDMGRILTVYKD 142 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFM 242 + + EFL G R S++ + + + K + L D + Sbjct: 143 SDDPADMRNQAILEFLYACGARISEASGLMLADVDFDAKQVKVFGKGSKERIIPLHDMAV 202 Query: 243 KLLAMTPI----------GKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVR 290 K + E FF++ +M FK AGV+ + H +R Sbjct: 203 KTMKSYAWRARPVLLKGKPNEFFFVSTRGNRMGPDAMRKMFKNTLIMAGVDTSYTPHDMR 262 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSR 337 AT + GA + G +++ + YT D ++ + + Sbjct: 263 HTFATDLVEGGADLKSVQEMLGHESLSTTQIYTHLSVDHLKQAVHQAH 310 >gi|307942508|ref|ZP_07657856.1| tyrosine recombinase XerD [Roseibium sp. TrichSKD4] gi|307774147|gb|EFO33360.1| tyrosine recombinase XerD [Roseibium sp. TrichSKD4] Length = 307 Score = 129 bits (324), Expect = 7e-28, Method: Composition-based stats. Identities = 42/306 (13%), Positives = 85/306 (27%), Gaps = 41/306 (13%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP--- 130 I + + A N+ S+ D + + + T I + + Sbjct: 7 IESFLEMLSAERGAAENTLQSYRRDLDDFAEFTAPQNPSAVNTDRISAYLRDLSLRGFAE 66 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE------------- 177 +S + L++++ FK+ +P ++ PK++ + + + Sbjct: 67 TSQARRLSALKQYFKFLYADGIRTDDPTRTLSAPKKRQALPKVLSIDEVDKLIGEAQQAA 126 Query: 178 -DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-----------SIK 225 Q + + E L +GLR S+ V Q + + Sbjct: 127 TKKQDSPAKQLRAQRLYTLLEVLYATGLRVSELVALPVTAAQRDQRLIEVTGKGGKERLV 186 Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-- 283 + L F + F K A ++ Sbjct: 187 PLSPAAQKAMRDYIRQRAELGAYATSPWLFPSHGKSGHFTRQAFGRDLKDLAVDTKIDTD 246 Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342 S H +R A+ GA + G + + YT D R++ + Sbjct: 247 KVSPHVLRHAFASHLLQNGADLRVVQQLLGHADISTTQIYTHVLDE---------RLTQL 297 Query: 343 VDSDDP 348 V+S P Sbjct: 298 VESAHP 303 >gi|213965974|ref|ZP_03394164.1| tyrosine recombinase XerD [Corynebacterium amycolatum SK46] gi|213951388|gb|EEB62780.1| tyrosine recombinase XerD [Corynebacterium amycolatum SK46] Length = 312 Score = 129 bits (324), Expect = 7e-28, Method: Composition-based stats. Identities = 40/272 (14%), Positives = 91/272 (33%), Gaps = 33/272 (12%) Query: 85 GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESRKHT----------PS 131 L+ N+ S++ ++ +R+ G + ++T + + + P+ Sbjct: 19 KGLSANTLASYKRDLEKYRTYLREIGRTELAQVTEQDVSEFLAYLARGDKSEGRPALAPT 78 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-- 189 S + L+++R K+AV + + ++ V PK+ + + + +++ + + Sbjct: 79 SVTRSLSAVRSFHKFAVGEGALDVDVAKRVAPPKQPSRYPKALSIDEVTRLIESIPDDGT 138 Query: 190 -----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMK 243 + R EFL +G R S+ + + + K G V + M Sbjct: 139 AVVTDLRNRALVEFLYSTGARVSEVTGLDIDDVDRETNLVLLRGKGGKERIVPVGSPAMA 198 Query: 244 LLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAGVNK--SAHGVRK 291 L ++ + + +AG+ S H +R Sbjct: 199 ALDAWLTRGRPSWVRANSGPALFINSLGRRLSRQSAGNTLAELGERAGLKVKISPHTLRH 258 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYT 323 T + GA + G +V + YT Sbjct: 259 SFGTHLIEGGADVRVVQELLGHASVTTTQIYT 290 >gi|229061589|ref|ZP_04198932.1| Prophage LambdaBa02, site-specific recombinase, phage integrase [Bacillus cereus AH603] gi|228717710|gb|EEL69361.1| Prophage LambdaBa02, site-specific recombinase, phage integrase [Bacillus cereus AH603] Length = 362 Score = 129 bits (324), Expect = 7e-28, Method: Composition-based stats. Identities = 50/332 (15%), Positives = 102/332 (30%), Gaps = 32/332 (9%) Query: 27 KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS 86 G ++I ++ +T +Y NS + L+ + + S Sbjct: 9 TGRRKQITKGGFKTKKAAQEEVARVTNDLANGDYENSDIR----FSQLVEIWMQEKE-SS 63 Query: 87 LAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS---MRV 142 ++ ++ +++ + G+ I + + + + + ++ Sbjct: 64 CRPSTLYQYKRILRSRVMPEFGEKRLSDIKPLTVHNFHQKLLKEGLTTKYISSVDVMLKQ 123 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202 + V E + NP +RPK K + WT E+ +F + + F L++ Sbjct: 124 ILDKGVELEMINSNPAKKAKRPKVKKKAQASWTIEEAMKFMEYAKIQGSYYITFVLALHT 183 Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKT-----------------GTIITVELPDGFMKLL 245 G+R + + +I Q+T I + +LL Sbjct: 184 GMRIGEVLALKWNDINFENKTIHVQRTLTLVDGKYELGETKTEASNRIIPMTEELMGELL 243 Query: 246 AMTPIGKETFFINNDKQKM----NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300 KE F + + KA V H +R+ TI D+ Sbjct: 244 EYQNHKKENSFDLLICTRNKKIVHPYTIRYQMKALCEAIDVPYIRFHDIRRTFTTILIDS 303 Query: 301 GATAHELMATYGWKTVDQA-ETYTKGADRIRL 331 GA A + G V YT + ++ Sbjct: 304 GANAKVVSKLLGHTNVSTTLNIYTDVYEERQI 335 >gi|289550957|ref|YP_003471861.1| Site-specific tyrosine recombinase [Staphylococcus lugdunensis HKU09-01] gi|315658459|ref|ZP_07911331.1| tyrosine recombinase XerC [Staphylococcus lugdunensis M23590] gi|289180489|gb|ADC87734.1| Site-specific tyrosine recombinase [Staphylococcus lugdunensis HKU09-01] gi|315496788|gb|EFU85111.1| tyrosine recombinase XerC [Staphylococcus lugdunensis M23590] Length = 297 Score = 129 bits (324), Expect = 7e-28, Method: Composition-based stats. Identities = 36/267 (13%), Positives = 90/267 (33%), Gaps = 21/267 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVESRKHTPSSAIQFLTS 139 + + ++ S+ Q T ++ S + ++ ++ + +++ Sbjct: 16 RNFSDHTIKSYHDDLMQFNEFLAQEMLTLSTFEYKDARNYLSYLYNKNLKRTTVSRKIST 75 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----QFKSFWSEGSQPRLA 195 +R +++ + Q+ INP + + PK++ + + + +M +G + R+ Sbjct: 76 LRSFYEYWMTQDETVINPFVQLVHPKKEQYLPQFFYEAEMDALFETVLHDAKKGLRDRVI 135 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLAMT------ 248 E L +G+R S+ + K + + + + Sbjct: 136 LELLYSTGMRVSELVHIKKMDIDLTLPGVKVLGKGSKERFLPFGEFCKQSIEQYLLEFGP 195 Query: 249 --PIGKETFFINNDKQKMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGATA 304 +N + Q + + AGV + H +R AT + GA Sbjct: 196 VKQNDHPFLLVNMNGQPITERGVRYVLNDIVKRTAGVTDIHPHKLRHTFATHLLNQGADL 255 Query: 305 HELMATYGWKTVDQAETYTKGA-DRIR 330 + + G + YT + D++R Sbjct: 256 RTVQSLLGHVNLSTTGRYTHVSKDQLR 282 >gi|237746680|ref|ZP_04577160.1| site specific integrase/recombinase [Oxalobacter formigenes HOxBLS] gi|229378031|gb|EEO28122.1| site specific integrase/recombinase [Oxalobacter formigenes HOxBLS] Length = 326 Score = 129 bits (324), Expect = 7e-28, Method: Composition-based stats. Identities = 48/301 (15%), Positives = 97/301 (32%), Gaps = 43/301 (14%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TP 130 + Y + L+ N+ S+ Q+ +G+ ++++ IR V +P Sbjct: 11 VKSYLDTLSGQRKLSGNTLDSYRRDLAQLTEMAGETGLNRLSSTDIRRFVSRLHASGLSP 70 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 S + L++ R F+W V + ++ NP + PK+ + + +D + S + Sbjct: 71 RSIGRKLSAWRGFFQWLVDEALLSTNPAEDIHAPKKSKPLPKALSVDDAVRLVSSGPADT 130 Query: 191 Q-----------PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------- 232 R FE L SGLR S+ +Q ++ + Sbjct: 131 NASSAGQAAALCDRAMFELLYSSGLRVSELTGLDIQAVRQAGYVSAGWIDLNEKEVTVTG 190 Query: 233 ------------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274 + P F+N+ ++++ Q + K Sbjct: 191 KGNKTRIVPAGDAAITAVRNWLAARDNLVHPEALPRDAFALFVNSRGKRISPRQVQLRLK 250 Query: 275 AKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 A A + G+ H +R A+ + + G ++ + YT D L Sbjct: 251 AHAKRLGLPVNVHPHVLRHSFASHILQSSGDLRAVQEMLGHSSIASTQIYT-ALDFQHLA 309 Query: 333 I 333 Sbjct: 310 A 310 >gi|308271353|emb|CBX27961.1| Tyrosine recombinase xerC [uncultured Desulfobacterium sp.] Length = 310 Score = 129 bits (323), Expect = 7e-28, Method: Composition-based stats. Identities = 51/297 (17%), Positives = 98/297 (32%), Gaps = 42/297 (14%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDY------RKITTKHIRSGVE----------SRKH 128 +VN+ ++ + + + + +I+T + +K+ Sbjct: 21 KGYSVNTCRAYANDLYEFSSYAAEKSGQDSDEESEISTFMVEDANYLLIRAYLGFLHKKN 80 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 S I+ L+++R FK VR+ ++ NP + PK+ T ++M + Sbjct: 81 KKKSIIRKLSALRSFFKHLVRRNIISDNPLELISTPKQDKNIPAYLTVDEMFRLLDSIKT 140 Query: 189 GS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMK 243 + + R FE + SG+R S+ V + K G V + M Sbjct: 141 DTVSGLRNRAIFETMYSSGIRVSELAGLNVSSVDFGAGLIKVFGKGGKERIVPIGSKAMD 200 Query: 244 LLAMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATK--AGVNKSAHGVRK 291 + + I N +K ++ + + ++ V S H +R Sbjct: 201 TIKSYRQKIQGDNILSDKNSPLFLNKNKGRLTTRSIARVLEKFVSEFCISVPVSPHALRH 260 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 AT DAGA + G K++ + YT R+ D P Sbjct: 261 SFATHMLDAGADLRVVQELLGHKSLSTTQRYTHV---------GIDRLMETYDKAHP 308 >gi|317153262|ref|YP_004121310.1| tyrosine recombinase XerD [Desulfovibrio aespoeensis Aspo-2] gi|316943513|gb|ADU62564.1| tyrosine recombinase XerD [Desulfovibrio aespoeensis Aspo-2] Length = 307 Score = 129 bits (323), Expect = 7e-28, Method: Composition-based stats. Identities = 50/279 (17%), Positives = 91/279 (32%), Gaps = 22/279 (7%) Query: 74 LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTP 130 + Y + L+ NS + + ++ + +T + + + + Sbjct: 17 WVDGYLEHVLIEKGLSENSLSGYSADLASLLAFLEEKSFRLEDLTERTLFLYLTYLRARG 76 Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---- 183 S + L+S+R F +A+ Q + +P +E PK + T+E+M + Sbjct: 77 LQSRSLARHLSSLRGFFAFALDQRWYKEDPGHLLENPKLPKKLPEFLTREEMSRVLALPE 136 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV-QHLQNNIFSIKTQKTGTIITVELPDGFM 242 + G + + E L +GLR S+ V + K V + Sbjct: 137 TATKLGMRDQAMLELLYAAGLRVSELIEMKVLDYDAQTGLLRVFGKGAKERLVPIHYVAQ 196 Query: 243 KLLAMTPIGKETFFINNDKQKM--------NATQFSIWFKAKATKAGVNKS--AHGVRKF 292 +L+ + F K A KAG+ +S H R Sbjct: 197 DVLSRYLLNTRPAFRPAVDFMFLNRSGKGLTRQGVWKLIKTYADKAGIKRSISPHTFRHS 256 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIR 330 AT + GA + G + E YT A R+R Sbjct: 257 FATHLLEGGADLRTVQMLLGHSDISATEIYTHIQAGRLR 295 >gi|288937766|ref|YP_003441825.1| tyrosine recombinase XerC [Klebsiella variicola At-22] gi|288892475|gb|ADC60793.1| tyrosine recombinase XerC [Klebsiella variicola At-22] Length = 300 Score = 129 bits (323), Expect = 7e-28, Method: Composition-based stats. Identities = 44/282 (15%), Positives = 95/282 (33%), Gaps = 21/282 (7%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSG---V 123 L + + + L+ + +++ D + ++G +++ +RS Sbjct: 6 LSACVDRFLRYLGVERQLSPITLTNYQRQLDALIALADEAGLKSWQQCDAAQVRSFAVRS 65 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 P+S L+++R F W V Q +A NP + PK + +D+ + Sbjct: 66 RRAGLGPASLALRLSALRSFFDWMVSQGELAANPAKGIAAPKIPRHLPKNIDVDDVNRLL 125 Query: 184 SFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD 239 + R E + +GLR S+ ++HL + K + + Sbjct: 126 DIDLNDPLAVRDRAMLEVMYGAGLRLSELVNLDIKHLDLESGEVWVMGKGSKERRLPIGR 185 Query: 240 GFMKLLAMTPIGKETFFINND-------KQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290 + + + F ++D ++++A F K G+ + H +R Sbjct: 186 NAVTWIEHWLDLRGLFGTDDDALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLR 245 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 AT ++ + G + + YT D L Sbjct: 246 HSFATHMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 286 >gi|209883739|ref|YP_002287596.1| tyrosine recombinase XerC [Oligotropha carboxidovorans OM5] gi|209871935|gb|ACI91731.1| tyrosine recombinase XerC [Oligotropha carboxidovorans OM5] Length = 355 Score = 129 bits (323), Expect = 7e-28, Method: Composition-based stats. Identities = 42/319 (13%), Positives = 89/319 (27%), Gaps = 36/319 (11%) Query: 50 ALTGSTPKREYINSPRKKPTT--LKWLISEYRKSAHW-GSLAVNSRISFESYFDQ----I 102 A S P+ + P T + ++ + L+ + ++E Q + Sbjct: 29 AKRTSKPQAQPDPGSIALPATGDFQAEVARWLAHLKSERRLSPKTLEAYERDLRQCIGFL 88 Query: 103 IRKSGD----FDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAI 155 G + I +R+ + SR+ S ++ L +R ++ R+ + Sbjct: 89 AEHWGKPVSLASFAGIEATDVRAFMASRRSHDVAGRSLMRALAGLRSFGRFLEREGKGKV 148 Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL---------LYSGLRC 206 ++ PK +P + + R + + SGLR Sbjct: 149 GALSAIRAPKISKSLPKPLAVSAARHLTEAEIRAGEDRPPWIWARDAAVMALLYGSGLRI 208 Query: 207 SDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ---- 262 S++ + + TG + +L Sbjct: 209 SEALGLARRDIPEPGRGDVITVTGKGNKTRMVPVLQAVLDAVQDYIAQCPYELSPDKPVF 268 Query: 263 ------KMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWK 314 ++ + + G+ + H +R AT G + G Sbjct: 269 VGARGGPLSPRIIQLTMERLRGALGLPDSATPHALRHSFATHLLSRGGDLRAIQELLGHA 328 Query: 315 TVDQAETYTKGADRIRLGI 333 ++ + YT G D RL Sbjct: 329 SLSTTQIYT-GIDAERLMD 346 >gi|197116868|ref|YP_002137295.1| site-specific recombinase, XerC [Geobacter bemidjiensis Bem] gi|197086228|gb|ACH37499.1| site-specific recombinase, XerC [Geobacter bemidjiensis Bem] Length = 293 Score = 129 bits (323), Expect = 7e-28, Method: Composition-based stats. Identities = 43/294 (14%), Positives = 91/294 (30%), Gaps = 29/294 (9%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRK-- 127 + ++ +++ ++ ++ S +Q + ++ IR + Sbjct: 5 LEQFYSYLETERNVSPHTLAAYRSDLEQFLSFLAREREAPRAEEVDHLAIRRYLAQLHKG 64 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 SS + L+++R LF++ +R+ + NP V PK++ + + + + Sbjct: 65 CAKSSIGRKLSAIRALFRYLMREGKLEKNPAELVSTPKKEKRLPFHLNIDQVSALVTAPA 124 Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGV-QHLQNNIFSIKTQKTGTIITVELPDGFM 242 + R E L G+R S+ V + K G V + Sbjct: 125 GSSGLPLRDRAVLETLYSCGIRVSELTGMNVGDMDLAAGLARVMGKGGKERLVPVGSCAR 184 Query: 243 KLLAMTPIGKETFFI------NNDKQKMNATQFSIWF--KAKATKAGVNKSAHGVRKFSA 294 LA + N ++ + A S H +R A Sbjct: 185 SALAAYLAERADPGPAEPLILNARGGRLTRRSVARIVDAHMLLIAAMRKVSPHTLRHTFA 244 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 T + GA + G ++ + YT + ++ V D P Sbjct: 245 THLLEGGADLRAIQELLGHASLSTTQKYTHVS---------IDKLMEVYDKAHP 289 >gi|149919060|ref|ZP_01907545.1| site-specific recombinase, phage integrase family protein [Plesiocystis pacifica SIR-1] gi|149820213|gb|EDM79632.1| site-specific recombinase, phage integrase family protein [Plesiocystis pacifica SIR-1] Length = 361 Score = 129 bits (323), Expect = 7e-28, Method: Composition-based stats. Identities = 45/327 (13%), Positives = 91/327 (27%), Gaps = 28/327 (8%) Query: 24 YFRKGHGR--RIRLPYP-HESTFIPAYMSALTGS------TPKREYINSPRKKP-TTLKW 73 F+ GR RIR P + Y + + P+++P + Sbjct: 9 QFQHPDGRIERIRRRSPVNTRRGAQQYEREVRSALLSGTYQKGDTTRQEPKQEPCPSFAQ 68 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVE--SRKHTP 130 S++ + + +S S S + + G +I + I ++ + Sbjct: 69 FASQFIDNYATVNNKPSSVRSKRSMLEHHLTPFFGKMRLSQIGPRQIERYKALKAKTLSA 128 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 + LT++R + A Y+ P SV+ + R E+ + E Sbjct: 129 KTINNHLTTVRKMLVVASEWGYLEAVP--SVKWMRAPKPEFRFLDFEEADRLLEGAKEEP 186 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-----------TGTIITVELPD 239 + +GLR + + + ++ + L + Sbjct: 187 MWWTMILVAMRTGLRQGELLGLRWCDVDLKSGRLVIRQAVAEGIVGTPKNHRQRELPLAE 246 Query: 240 GFMKLLAMTPIGKET-FFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATIS 297 + L F D + KAG+ H +R A+ Sbjct: 247 SVHQALEAWRHRLGPLVFCQPDGTMLTKNMCKWPLIRAKRKAGIEALGWHDLRHTFASHL 306 Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324 G + G T++ Y Sbjct: 307 VMRGVPLRAVQELLGHSTIEMTMRYAH 333 >gi|145588480|ref|YP_001155077.1| tyrosine recombinase XerD [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145046886|gb|ABP33513.1| tyrosine recombinase XerD subunit [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 305 Score = 129 bits (323), Expect = 8e-28, Method: Composition-based stats. Identities = 50/283 (17%), Positives = 92/283 (32%), Gaps = 25/283 (8%) Query: 73 WLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRK- 127 I + + LA NS ++ + + D +T K + + + R+ Sbjct: 13 EAIERFCDACWLEDGLAKNSLSAYRRDLLLLAQWLYQQSGVDLYAVTEKDLTAYIAHRRA 72 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 ++A + LT + ++ A+R V +PC+ + K+ + +++ + + Sbjct: 73 DKATTANRRLTVFKRFYRHALRINLVKSDPCIGLRAAKQALRFPKTLSEDQVTALLNAPD 132 Query: 188 E----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGF 241 G + R E + SGLR S+ L N ++ V Sbjct: 133 IETPLGLRDRTMLELMYASGLRVSEIVSLKTVALGLNEGVVRVVNGKGGKERLVPFGGEA 192 Query: 242 MKLLAMT-----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHG 288 + L F + + F K AT A + S H Sbjct: 193 GQWLRRYLAEARTPLLEGKTTDAVFVGRHTGTGLTRQAFWALIKRYATVANIPVALSPHT 252 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +R AT + GA + G + + YT A R RL Sbjct: 253 LRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVA-RERL 294 >gi|329895691|ref|ZP_08271114.1| site-specific tyrosine recombinase XerC [gamma proteobacterium IMCC3088] gi|328922209|gb|EGG29563.1| site-specific tyrosine recombinase XerC [gamma proteobacterium IMCC3088] Length = 306 Score = 129 bits (323), Expect = 8e-28, Method: Composition-based stats. Identities = 42/283 (14%), Positives = 87/283 (30%), Gaps = 23/283 (8%) Query: 72 KWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKI---TTKHIRSGVESRK 127 +++ A L+ ++ ++ D + + D I H+RS S + Sbjct: 8 SEAAAQFITYARDVKQLSAHTLKHYQRDIDSFVAQLEPSDADNIHSLKEYHVRSWANSLR 67 Query: 128 HT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 P+S + L+S+R F++ ++ ++ NP V PK+ + + + + Q Sbjct: 68 RKGLAPASIARHLSSVRSWFQFCAKRFGLSHNPAAGVRAPKQARKLPKAMDADQINQCLV 127 Query: 185 FWSE---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDG 240 SE ++ E L GLR S+ + + T K + + Sbjct: 128 APSESDLDTRDLAMAELLYSCGLRLSELQSLTLAQIDIQQRLVTVTGKGNKTRQIPIGGV 187 Query: 241 FMKLLAMTPIGKETFFINNDKQKM---------NATQFSIWFKAKAT--KAGVNKSAHGV 289 + L + + A V+ H + Sbjct: 188 ALDALKKWMRQHPLAGDLQASTPVFTTRQGKALSPRSIQTRLDRLAKHNAIPVHVHPHMM 247 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 R A+ ++ + G + + YT D L Sbjct: 248 RHSFASHLLESSGDLRAVQELLGHSNISTTQIYTH-LDFQHLA 289 >gi|264677254|ref|YP_003277160.1| tyrosine recombinase XerD [Comamonas testosteroni CNB-2] gi|262207766|gb|ACY31864.1| tyrosine recombinase XerD [Comamonas testosteroni CNB-2] Length = 318 Score = 129 bits (323), Expect = 8e-28, Method: Composition-based stats. Identities = 53/314 (16%), Positives = 97/314 (30%), Gaps = 27/314 (8%) Query: 45 PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR 104 A A P P+ + L I L+ N+ ++ R Sbjct: 3 DAPKKARESQIPDDWPPPLPQSQ-HALDQFIDALLLED---GLSRNTLSAYRRDLTATAR 58 Query: 105 KSGDF-DYRKITTK---HIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158 + + ++ +R +S+ + LT +R F WA+R++ +A +P Sbjct: 59 WLARLQPPKALDAALEGDLQGYFTARVEGTKATSSNRRLTVLRRYFHWALREKRIAADPT 118 Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGV 214 + + K+ + T+E ++ G + R E + SGLR S+ + Sbjct: 119 VRMLAAKQPPRMPKTLTQEQVEALLDAPDVDSPLGLRDRAMLELMYASGLRVSELVGVCM 178 Query: 215 QHLQ-----------NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK 263 L + +E + + + E F+ Sbjct: 179 HELDLRSGVLRVTGKGRKERLVPFGQEAQHWLERYLQQARAVILGGQQTEEVFVTQRGAG 238 Query: 264 MNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321 M+ F + K A AGV S H +R AT + GA + G + Sbjct: 239 MSRVMFWVIVKKCAQIAGVNSPLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTTI 298 Query: 322 YTKGADRIRLGIKN 335 YT A + Sbjct: 299 YTHVARERLKALHA 312 >gi|255689937|ref|ZP_05413612.1| tyrosine recombinase XerD [Bacteroides finegoldii DSM 17565] gi|260624543|gb|EEX47414.1| tyrosine recombinase XerD [Bacteroides finegoldii DSM 17565] Length = 319 Score = 129 bits (323), Expect = 8e-28, Method: Composition-based stats. Identities = 46/297 (15%), Positives = 103/297 (34%), Gaps = 25/297 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKH-- 128 +I +Y++ SL+ N+ ++ + D+++ + + ++ Sbjct: 16 IIRKYQQYLKLEKSLSPNTLEAYLTDLDKLLSFLTLEGINILDVCLADLQRFAAGLHDIG 75 Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---- 183 P S + L+ ++ F++ + +Y+ +P +E P + T E++ + Sbjct: 76 IHPRSQARILSGIKSFFRFLIMADYLEADPSELLESPNIGLKLPEVLTVEEIDRIIATVD 135 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFM 242 +EG + R E L GLR S+ + L + F K + + + Sbjct: 136 RSKAEGQRNRAILETLYSCGLRVSELVNLKLSDLYFDEGFIKVEGKGNKQRLIPISPRAI 195 Query: 243 KLLAMTPIGKETFFINNDK-----------QKMNATQFSIWFKAKATKAGVNK--SAHGV 289 + + + + + ++++ K A +A + K S H Sbjct: 196 NEIKLYFTDRNQIEVKSGHEDFVFISLRRGKRLSRIMIFHMIKELAQQASITKNISPHTF 255 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346 R AT + GA + G +++ E YT DR L + + Sbjct: 256 RHSFATHLLEGGANLRAIQCMLGHESIATTEIYTH-IDRNVLRSEIIEHHPRNIKYR 311 >gi|124516260|gb|EAY57768.1| putative phage integrase family protein [Leptospirillum rubarum] gi|206603101|gb|EDZ39581.1| Putative phage integrase family protein [Leptospirillum sp. Group II '5-way CG'] Length = 321 Score = 129 bits (323), Expect = 8e-28, Method: Composition-based stats. Identities = 37/275 (13%), Positives = 82/275 (29%), Gaps = 21/275 (7%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSGV 123 + ++ + + + +++ D R D + + Sbjct: 23 DDAVRDFLEELAQSGHSPRTLMAYRRDLDAFRRFLLLRGKDSPSDPSIDRTLALSYLFDL 82 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 E +++ P S ++ L+S+R ++W R+ NP + P+R ++ +M Sbjct: 83 EQQEYRPRSVLRILSSLRSFYQWLCRKGRCPSNPFEDLSGPRRPKTVPTVLSEREMATLL 142 Query: 184 SFW----SEGSQPRLAFEFLLYSGLRCSDSCR-AGVQHLQNNIFSIKTQKTGTIITVELP 238 E + + E +G+R S+ K V L Sbjct: 143 ESRPGNSWEDRRDTVMLELFYLTGIRLSELAGLVRGDLSPGMDRIQVRGKGNKERMVPLL 202 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW-----FKAKATKAGVN---KSAHGVR 290 +LL + S+ + + +G+ + H R Sbjct: 203 GLTRELLRDFLSEEGGPGAPLFAVSPGGEALSVHQIGRIVRRRVRLSGLGDRGVTPHTFR 262 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 AT D G ++ G +++ + YT Sbjct: 263 HSCATHLLDRGMDLRKIQELLGHQSLGTTQKYTHV 297 >gi|74318396|ref|YP_316136.1| tyrosine recombinase XerD [Thiobacillus denitrificans ATCC 25259] gi|74057891|gb|AAZ98331.1| tyrosine recombinase XerD [Thiobacillus denitrificans ATCC 25259] Length = 296 Score = 129 bits (323), Expect = 8e-28, Method: Composition-based stats. Identities = 47/290 (16%), Positives = 98/290 (33%), Gaps = 24/290 (8%) Query: 72 KWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSGVESR- 126 LI + LA + ++ + + + + R Sbjct: 3 DALIDRFCDHLWLEDGLAELTLAAYRRDLRSFAGWLDKTRARSLDAVAPGDVEAYLGWRF 62 Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 P SA ++ ++++ +++ +R+ +A +P L+++RPK ++ D+++ Sbjct: 63 AHHVGPRSAARYTSALKRFYRYLLRENLIAADPTLNLDRPKLPRALPASLSETDVERLLE 122 Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPD 239 +G + R E L +GLR S+ + L + ++ V L + Sbjct: 123 RADSDTPQGLRDRAMLETLYATGLRVSELVGLKLNALNLDDGVLRVTGKGNKDRLVPLGE 182 Query: 240 GFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287 ++ L + F+ M F K +A AGV + S H Sbjct: 183 EAVRRLRHYLAEARSQLLRRQVSDAVFVTPRGAAMTRQAFWYLIKRRAAAAGVTRQLSPH 242 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 +R AT + GA + G + + YT A + + Sbjct: 243 TLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARERMKRLHAAH 292 >gi|84517223|ref|ZP_01004578.1| Phage integrase [Loktanella vestfoldensis SKA53] gi|84508898|gb|EAQ05360.1| Phage integrase [Loktanella vestfoldensis SKA53] Length = 401 Score = 129 bits (323), Expect = 8e-28, Method: Composition-based stats. Identities = 51/353 (14%), Positives = 102/353 (28%), Gaps = 24/353 (6%) Query: 6 RLPPFVTKERTRHGKIIYYFR----KGHGRRIRLPYPHESTFIPAYMSALTGSTPK---- 57 R + E G YY R + R I+L + T A Sbjct: 28 RRAKGLALEVRISGGRTYYLRYSDDRSKTRYIKLADAGDVTLPQARTLCERMRNKIAMGV 87 Query: 58 -REYINSPRKKPTTLKW-LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115 + +K T + + Y + + + + +I G +IT Sbjct: 88 DPLKERAGKKLVPTFEAFAWNSYMPFSQANKRSWKTDETLIRT--HLIPAFGKKHLDEIT 145 Query: 116 TKHIRSGVE---SRKHTPSSAIQFLTSMRVLFKWAVRQEYV-----AINPCLSVERPKRK 167 T+ + S + P S + L +R +F A R + + + + K Sbjct: 146 TEDVLSMQQAGLKAGAAPGSVNRRLILLRYMFNTAWRDWKIAGVKENPTHGVRLLKENNK 205 Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227 E + + S+ + + FLL +G R ++ A Q + + Sbjct: 206 KERYVRADEMARLYAEICSSQNTMLKHVVAFLLLTGARRNEVLHATWQDINLTTGKWRIP 265 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT---QFSIWFKAKATKAGVN- 283 T + LP + + + + + +AG+ Sbjct: 266 DTKSGYARHLPLNDGAMAVLHQMQGVSRSQYIFGNPKTGKPYVHIYYAWDTARRRAGLPD 325 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 H +R A++ + G + +E+ G + + Y L N Sbjct: 326 VRMHDLRHTFASLLINNGRSIYEVQKLLGHTQIKTTQRYAHLTQETLLDASNI 378 >gi|294637959|ref|ZP_06716226.1| tyrosine recombinase XerC [Edwardsiella tarda ATCC 23685] gi|291088891|gb|EFE21452.1| tyrosine recombinase XerC [Edwardsiella tarda ATCC 23685] Length = 303 Score = 129 bits (323), Expect = 8e-28, Method: Composition-based stats. Identities = 46/283 (16%), Positives = 94/283 (33%), Gaps = 21/283 (7%) Query: 70 TLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVES 125 TL +S + + L+ + ++ II G D+ + + +R+ V Sbjct: 7 TLNAPVSAFLQMLRVERQLSPRTVDTYRRQLAAIIALLQESGVTDWLALDSARVRALVAR 66 Query: 126 RKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + P+S L+++R W V +A NP V P++ + +D+ + Sbjct: 67 SRRQGLEPASLALRLSALRSFLDWQVSCGALAANPAKGVAAPRQGRHLPKNLDVDDVNRL 126 Query: 183 KSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELP 238 + + + R E + GLR S+ +HL K + + Sbjct: 127 LAIDESDTLAVRDRAMLELMYGGGLRLSELVGLDCRHLDLATGEVWVLGKGSKERRLPIG 186 Query: 239 DGFMKLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289 ++ + + FI++ +++ F K GV + H + Sbjct: 187 REAVRWVEKWLALRIALQPQDDALFISSRGGRISPRNVQKRFAEWGVKQGVTSHIHPHKL 246 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 R AT ++ + G + + YT D L Sbjct: 247 RHSFATHLLESSGDLRAVQELLGHANLSTTQIYTH-LDFQHLA 288 >gi|85708393|ref|ZP_01039459.1| integrase [Erythrobacter sp. NAP1] gi|85689927|gb|EAQ29930.1| integrase [Erythrobacter sp. NAP1] Length = 295 Score = 129 bits (323), Expect = 8e-28, Method: Composition-based stats. Identities = 44/297 (14%), Positives = 93/297 (31%), Gaps = 31/297 (10%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-T 129 + A N+ ++ D GD K + + Sbjct: 2 SAATRAFLDMLAAERGAAANTLAAYRRDLDGAEEALGD--LDKASRAAVAKLSAQWASLA 59 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---- 185 PS+ + +++R F +AV + + +P ++ +P+ + + + E ++ Sbjct: 60 PSTVARKASALRQFFGFAVDEGWREDDPSGALPKPRTRRPLPKILSHEAVETLLQRAELE 119 Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDG 240 + E L SGLR ++ + + + K G V + + Sbjct: 120 ANSGQPTALRQLALLEMLYGSGLRATELVSLPLVSVPRDAPLITVKGKGGQARMVPVSER 179 Query: 241 FMKLLAMTPIGKETFFINNDKQKM------NATQFSIWFKAKATKAGVN---KSAHGVRK 291 + LA + + + + K A +A ++ S H +R Sbjct: 180 AKEALAEWVKVRPSDPPTGHLFPSRGGKHLSRVRLFQILKELAVRADLDPAGISPHVLRH 239 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 AT + GA L G + + YT ++ R+ +V+S P Sbjct: 240 AFATHLLEGGADLRVLQTLLGHADIATTQIYTHV---------DAARLVELVNSRHP 287 >gi|282880564|ref|ZP_06289271.1| phage integrase domain protein [Prevotella timonensis CRIS 5C-B1] gi|281305667|gb|EFA97720.1| phage integrase domain protein [Prevotella timonensis CRIS 5C-B1] Length = 316 Score = 129 bits (323), Expect = 8e-28, Method: Composition-based stats. Identities = 41/283 (14%), Positives = 100/283 (35%), Gaps = 23/283 (8%) Query: 65 RKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKH 118 ++ ++ Y + + + ++ +++ ++ + D + + Sbjct: 2 ESNKESVANVVKAYTRYLKLERNYSPHTLDAYQHDLRWLLDYCENAGMHPKDMQLKDLEL 61 Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + P+S + L+ +R +++ V + +P +E P+ + E+ Sbjct: 62 FAGQLHEHHIGPTSQARILSGVRSFYRFLVLDGRIEQDPTELLESPRLGEHLPEVLSTEE 121 Query: 179 MQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-- 232 + ++ EG + + E L GLR S+ + +L ++ G+ Sbjct: 122 VDMIENSIDLSKPEGQRNKAIIEVLFSCGLRVSELVNLKLSNLYLEEGFVRVMGKGSKER 181 Query: 233 ---------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 ++ L+ + ++ F+N + + T I K +A AG+ Sbjct: 182 LVPISSKAIRELQYWFVDRNLMKIQQGEEDYVFLNRRGKHLTRTMILIMLKRQAVAAGIT 241 Query: 284 KS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 K+ H +R AT GA + A G +++ E Y Sbjct: 242 KTISPHTLRHSFATELLKGGADLRAIQAMLGHESIGTTELYMH 284 >gi|157144439|ref|YP_001451758.1| site-specific tyrosine recombinase XerC [Citrobacter koseri ATCC BAA-895] gi|157081644|gb|ABV11322.1| hypothetical protein CKO_00153 [Citrobacter koseri ATCC BAA-895] Length = 300 Score = 129 bits (323), Expect = 8e-28, Method: Composition-based stats. Identities = 45/286 (15%), Positives = 99/286 (34%), Gaps = 21/286 (7%) Query: 67 KPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSG 122 +L ++ + + L+ + ++++ D II +G+ +++ +R+ Sbjct: 2 TELSLSQDVARFLRYLGVERQLSPITLLNYQRQLDAIIALAGETGLQSWQQCDAAMVRAF 61 Query: 123 ---VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + P+S L+++R F W V Q + NP V PK + +D+ Sbjct: 62 AVRSRRKGLGPASLALRLSALRSFFDWLVSQGELNANPAKGVSAPKAPRHLPKNIDVDDI 121 Query: 180 QQFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITV 235 + + R E + +GLR S+ ++HL + K + Sbjct: 122 NRLLDIDLNDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRL 181 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSA 286 + + + + F ++D ++++A F K G+ + Sbjct: 182 PIGRNAVAWIEHWLDLRGLFGSDDDALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHP 241 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R AT ++ + G + + YT D L Sbjct: 242 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 286 >gi|196047758|ref|ZP_03114951.1| tyrosine recombinase XerC [Bacillus cereus 03BB108] gi|196021406|gb|EDX60120.1| tyrosine recombinase XerC [Bacillus cereus 03BB108] Length = 299 Score = 129 bits (323), Expect = 9e-28, Method: Composition-based stats. Identities = 43/287 (14%), Positives = 95/287 (33%), Gaps = 27/287 (9%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126 +K L+ + + + + S+++ + ++ G + IT +R + + Sbjct: 3 VKKLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFMEREGISSFLDITYADVRLYLTTL 62 Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----M 179 S + ++S+R L+++ +R+ Y NP PK++ + E+ Sbjct: 63 HDEKLARKSVARKVSSLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELF 122 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238 + + G + + E + +G+R S+ + + + +I K + Sbjct: 123 EVSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFG 182 Query: 239 DGFMKLLAMTPI------------GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284 L F+N + + KA + Sbjct: 183 SYAQDALITYIENGRKQLAEKTEEQSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRI 242 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 S H +R AT D GA + G + + + YT + RL Sbjct: 243 SPHMLRHTFATHMLDEGADLRTVQELLGHENLSATQIYTH-VSKERL 288 >gi|91776681|ref|YP_546437.1| tyrosine recombinase XerD [Methylobacillus flagellatus KT] gi|91710668|gb|ABE50596.1| Tyrosine recombinase XerD [Methylobacillus flagellatus KT] Length = 277 Score = 129 bits (323), Expect = 9e-28, Method: Composition-based stats. Identities = 52/266 (19%), Positives = 99/266 (37%), Gaps = 23/266 (8%) Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKI---TTKHIRSGVESR--KHTPSSAIQFLTSMRV 142 A N+ S+ R + + I+ + R + P S + + S+R Sbjct: 2 AKNTLTSYRQDLAAFAAWLQQTRRRAMLEAGPEDIQGFIAFRFPQSQPRSISRLVASLRR 61 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFEF 198 +++A+R+ Y++ +P + +E PK + +++++++ + + G + R E Sbjct: 62 FYRFALRESYISADPSIHIESPKLPRSLPKSLSEDEVERLINAPDTNTNLGLRDRAMLET 121 Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT--------- 248 L +GLR S+ V L ++ V L + ++ LA Sbjct: 122 LYATGLRVSELVGMHVTELSLTDGVVRITGKGSKTRLVPLGEQAVEWLARYLQEGRPSIL 181 Query: 249 -PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAH 305 + F+ + M F K A AG+ S H +R AT + GA Sbjct: 182 QQRLSDHLFVTQRGEGMTRQAFWYLIKRYAAIAGIQASLSPHVLRHAFATHLLNHGADLR 241 Query: 306 ELMATYGWKTVDQAETYTKGADRIRL 331 + G + + YT A R RL Sbjct: 242 VVQMLLGHADISTTQIYTHVA-RERL 266 >gi|167568329|ref|ZP_02361203.1| site-specific tyrosine recombinase XerC [Burkholderia oklahomensis C6786] Length = 306 Score = 129 bits (323), Expect = 9e-28, Method: Composition-based stats. Identities = 41/291 (14%), Positives = 92/291 (31%), Gaps = 31/291 (10%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRK 127 LI++Y + L+ ++ ++ D++ + + +T +R + + Sbjct: 3 ADLIADYLSNLRHVRKLSDHTLRAYAHELDELKKLANGRPLESLTAVDVRGAVARAHAGG 62 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + S L++ R ++W + + NP ++ PKR + + +D + Sbjct: 63 LSARSISHRLSAWRAFYRWFAQHVEMNANPVATIRAPKRAKMLPKALSVDDAAALMDAPA 122 Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------GT 231 G+ + E SGLR ++ V +++ + + Sbjct: 123 SGTAESLRDHAILELFYSSGLRLAELIGLDVAYVKIGEYRSEGWLDLAEAEVTVRGKGDK 182 Query: 232 IITVELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 V + + L F++ +M+ K A AG+ Sbjct: 183 ERKVPVGRKAIDALNAWLAVRGEFVRHDPHPLFLSVRGNRMSPGVVRGRVKRAALAAGIP 242 Query: 284 --KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R AT + + G ++ + YT D L Sbjct: 243 ANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYT-SLDFQHLA 292 >gi|158521685|ref|YP_001529555.1| tyrosine recombinase XerD [Desulfococcus oleovorans Hxd3] gi|158510511|gb|ABW67478.1| tyrosine recombinase XerD [Desulfococcus oleovorans Hxd3] Length = 297 Score = 129 bits (323), Expect = 9e-28, Method: Composition-based stats. Identities = 43/281 (15%), Positives = 96/281 (34%), Gaps = 24/281 (8%) Query: 72 KWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI------RSGVE 124 + L+ +Y LA NS ++ S + + +++ + + Sbjct: 5 ERLVDQYMSYLLIEKGLAENSLEAYGSDLAAYLDYLKAQNIDRVSETDMPVLLKYLIFLR 64 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 R S + L ++R +++ +++ +A +P +++ PK+ + +++++ + Sbjct: 65 DRGLNKRSRSRHLVTLRGFYRYLAQEKVLAFSPAETIDLPKKGLRLPDVLSVDEVKKLLA 124 Query: 185 FWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPD 239 G + E + +GLR S+ VQ + + ++ G V + Sbjct: 125 APDTTTARGMRDAAMIELMYAAGLRVSELVAMKVQDVNTEVCFVRVFGKGAKERVVPMGA 184 Query: 240 GFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AH 287 + L F+ + M F K AG+ KS H Sbjct: 185 YAKEKLEAYLSGARPALLKNYASLFLFVAWRGRPMTRQGFWKALKKYGLAAGIRKSIKPH 244 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 +R A+ + GA + G + + YT R Sbjct: 245 TLRHSFASHLLEGGADLRSVQIMLGHSDISTTQIYTHVTYR 285 >gi|313633457|gb|EFS00282.1| tyrosine recombinase XerC [Listeria seeligeri FSL N1-067] Length = 300 Score = 129 bits (323), Expect = 9e-28, Method: Composition-based stats. Identities = 37/280 (13%), Positives = 95/280 (33%), Gaps = 27/280 (9%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHIRSGVE 124 + L +Y S + + N+ ++E+ R + + + + + ++ Sbjct: 7 WEQLFLDYLHSE--RNYSENTSTAYENDLIDFRRFLNEQAITEYSQVTFLDVRIYLTELK 64 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + + ++ + ++S+R + + +R+ + NP V K + + + E+M+ Sbjct: 65 QKSFSRTTVARKISSLRSFYTFLLRENVITENPFTYVSHAKNQLRLPKFFYSEEMEALFQ 124 Query: 185 FWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF------------SIKTQ 227 E + R+ E L +G+R S+ + + + Sbjct: 125 VVYEDNETLTLRDRVLLEVLYGTGIRVSECAGILLTDIDKTYQSILIRGKGNKERYVPFG 184 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285 + D ++L+ ++ IN+ + + +KA + Sbjct: 185 AYAEDAITDYLDSRIELMKHFNKTHDSLLINHYGEPLTTRGIRYCLTKIISKASLTRKIH 244 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 H +R AT + GA + G ++ + YT Sbjct: 245 PHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHV 284 >gi|254796542|ref|YP_003081378.1| tyrosine recombinase XerD [Neorickettsia risticii str. Illinois] gi|254589779|gb|ACT69141.1| tyrosine recombinase XerD [Neorickettsia risticii str. Illinois] Length = 301 Score = 129 bits (323), Expect = 9e-28, Method: Composition-based stats. Identities = 40/296 (13%), Positives = 98/296 (33%), Gaps = 30/296 (10%) Query: 74 LISEYR-KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---T 129 + ++ K + +N+ S+ + + + + + + + + + Sbjct: 8 YVEQFLEKILVERNATLNTISSYRTDLRLLGAFLKKKGLKDASKEDLYGYIADLRAQQLS 67 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 ++ + + R F + ++ + NP ++E PK+ R TKE++ +F G Sbjct: 68 NATIRRKTATFRQFFSFLYSEKISSGNPAQTLELPKKTLVLPRYLTKEEVLSLLTFLETG 127 Query: 190 ----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQN----NIFSIKTQKTGTIITVELPDGF 241 + E L SG+R S+ + ++ I K + Sbjct: 128 QPATLRLYAILEILYSSGMRVSELINMKISDIRPLLNGQQHIIIVGKGRKERILPFSKKA 187 Query: 242 MKLLAMTPIGKETFFIN------NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKF 292 +++L + ++ + M+ + K A K ++ S H +R Sbjct: 188 IQVLKLYLTSYQSNSPWLFPGAGRKDRPMSRQRLGQLLKELALKCSIDPKRISPHVIRHS 247 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 AT D G + G + + YT + ++ +++ P Sbjct: 248 FATHLLDNGMDIKVVQDLLGHAQITTTQIYTHISQ---------NKLHKEIEAKHP 294 >gi|228960186|ref|ZP_04121843.1| Prophage LambdaBa02, site-specific recombinase, phage integrase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228799454|gb|EEM46414.1| Prophage LambdaBa02, site-specific recombinase, phage integrase [Bacillus thuringiensis serovar pakistani str. T13001] Length = 376 Score = 129 bits (323), Expect = 9e-28, Method: Composition-based stats. Identities = 51/332 (15%), Positives = 103/332 (31%), Gaps = 32/332 (9%) Query: 27 KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS 86 G ++I ++ +T +Y NS + L+ + + S Sbjct: 23 TGKRKQITKGGFKTKKAAQEEVARVTNDLANGDYENSDIR----FSQLVEIWMQEKE-SS 77 Query: 87 LAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS---MRV 142 ++ ++ +++ + G+ I + + + + + ++ Sbjct: 78 CRPSTLYQYKRILRSRVMPEFGEKRLSDIKPLTVHNFHQKLLKEGLTTKYISSVDVMLKQ 137 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202 + V E + NP +RPK K + WT E+ +F + +AF L++ Sbjct: 138 ILDKGVELEMINSNPAKKAKRPKVKKKAQASWTVEEAMKFMEYAKIQGSYYIAFVLALHT 197 Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKT-----------------GTIITVELPDGFMKLL 245 G+R + + +I Q+T I + +LL Sbjct: 198 GMRIGEVLALQWDDINFENKTIHVQRTLTLVDGKYELGETKTEASNRIIPMTEELMGELL 257 Query: 246 AMTPIGKETFFINNDKQKM----NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300 KE F + + KA V H +R+ TI D+ Sbjct: 258 EYQSHKKENSFDLLICTRNKKIVHPYTIRYQMKALCEAIDVPYIRFHDIRRTFTTILIDS 317 Query: 301 GATAHELMATYGWKTVDQA-ETYTKGADRIRL 331 GA A + G V YT + ++ Sbjct: 318 GANAKVVSKLLGHTNVSTTLNIYTDVYEERQI 349 >gi|294787717|ref|ZP_06752961.1| tyrosine recombinase XerD [Simonsiella muelleri ATCC 29453] gi|294484010|gb|EFG31693.1| tyrosine recombinase XerD [Simonsiella muelleri ATCC 29453] Length = 290 Score = 129 bits (323), Expect = 9e-28, Method: Composition-based stats. Identities = 41/276 (14%), Positives = 87/276 (31%), Gaps = 19/276 (6%) Query: 73 WLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHT 129 LI + + LA N+ ++ ++ ++ T + Sbjct: 3 ELIDKLLEHLWLQERLAHNTLEAYRRDLSKLAQRLDTQHADFWTADAVALASAIYVSDEQ 62 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSF 185 P S + L++ + L+ W V +P ++ K + T++ + Sbjct: 63 PRSQARSLSACKRLYAWLVETGQREDDPTRDLKATKLPHTLPKIITEQQIENLLNMPDCD 122 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKL 244 G + + E + +GLR +++ + + + N K V L + + Sbjct: 123 TPHGLRDKALLELMYATGLRVTEAVKLRMNEINLNHGLVNTIGKGDKQRIVPLGEEAVHW 182 Query: 245 LAMTPIG----------KETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFS 293 + + F++ K M + K A G+ S H +R Sbjct: 183 IGQYVQFSRPQLLKGRRCDELFVSQKKSGMTRQLAWLIVKQYADLVGIKSLSPHSLRHAF 242 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + GA + G + + YT A+ Sbjct: 243 ATHLVNHGADLRTVQMLLGHADIATTQIYTHVANER 278 >gi|260559074|ref|ZP_05831260.1| phage integrase [Enterococcus faecium C68] gi|260074831|gb|EEW63147.1| phage integrase [Enterococcus faecium C68] Length = 301 Score = 129 bits (323), Expect = 9e-28, Method: Composition-based stats. Identities = 43/283 (15%), Positives = 90/283 (31%), Gaps = 29/283 (10%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFDYRKITTKHIRSGVESR 126 T + Y + ++ ++E + +SGD D K +R + + Sbjct: 5 TWEQKFLRYL--IVERGYSEKTKEAYEEDILHFKHFLEESGDADLLKAEYFTVRVYLSAL 62 Query: 127 K-----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 ++ +S + + S+R +++ +++E + NP V K+ R + + +MQ Sbjct: 63 ADHRSSYSRNSISRKIASLRSFYQYLLKEEVIKENPFSYVHLKKKNLRLPRFFYENEMQA 122 Query: 182 FKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVE 236 + R E L SG+R S+ V + + + K Sbjct: 123 LFDSVAGDSPLDLRNRALLEVLYGSGIRLSECSSLSVSDIDFDSEVMLIHGKGNKERYAP 182 Query: 237 LPDGFMKLLA------------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN- 283 L L + F+N+ + + T K+ ++ Sbjct: 183 LGSFAQDALQEYFREGRQVLMTKYHEEHDIVFVNHHGKPITPTGIEYVLNQMIKKSSLDS 242 Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 H +R AT + GA + G + + Y Sbjct: 243 DIHPHMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHV 285 >gi|222529994|ref|YP_002573876.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725] gi|222456841|gb|ACM61103.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725] Length = 392 Score = 129 bits (323), Expect = 9e-28, Method: Composition-based stats. Identities = 45/384 (11%), Positives = 103/384 (26%), Gaps = 56/384 (14%) Query: 15 RTRHGKI-----IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 + + G+ + Y KG+ ++ AL + + Sbjct: 13 KRKDGRWCGFITVGYDEKGNQKKKFFYGKTRQEVAEKINQALN----EIKQGILITDNNI 68 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128 TL+ ++ + ++ ++ +ES I ++ + + +H++ + Sbjct: 69 TLENWLNIWLHQYKKNQISESTFDDYESIIKNHINPVLEKYNLKDLRPEHLQMLYNEKHK 128 Query: 129 TPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 S + + A++ + N + PK E + Q+ Sbjct: 129 AGLSTKRIKDIHVILHSALNQAIKNGLIVRNVSEATTLPKNTREKEMKVLTIEEQKRFLQ 188 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD------ 239 EG + + AF L +G+R + Q + I + + I Sbjct: 189 VLEGERLKPAFVLALSTGMRLGEILALKWQDVDLENKRITIRNSVRRIKNRNEQSEIKTK 248 Query: 240 -----------------------------------GFMKLLAMTPIGKETFFINNDKQKM 264 + + + F + Sbjct: 249 TVLVLKEPKTENSGRIIPLPDVAYQELVNFKLLQEEEKRQAGSSYVDSGFVFTTKVGTPI 308 Query: 265 NATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYT 323 F F KAG+N + H +R AT +A + G + Y+ Sbjct: 309 EPRNFLRTFYRITEKAGLNINFHALRHTFATRLLEANTNPKVVQELLGHSDISTTLNIYS 368 Query: 324 KGA-DRIRLGIKNSRRISSVVDSD 346 D + I + + ++ Sbjct: 369 HVLFDTKQKAIGEINDLMKNLTNE 392 >gi|291615720|ref|YP_003518462.1| XerC [Pantoea ananatis LMG 20103] gi|291150750|gb|ADD75334.1| XerC [Pantoea ananatis LMG 20103] Length = 301 Score = 129 bits (323), Expect = 9e-28, Method: Composition-based stats. Identities = 39/282 (13%), Positives = 87/282 (30%), Gaps = 21/282 (7%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR---KITTKHIRSGVESR 126 L+ + + + L+ + S+ ++ + + ++ +RS Sbjct: 5 LQETVDGFLRHLKVERQLSPLTLSSYARQLAALVTIADEMKISAWSQLDPAMVRSMAARS 64 Query: 127 KHTPSSAIQ---FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + +A L+++R W V ++ +A NP + P+ + +D+ Q Sbjct: 65 RRAGLAASSLALRLSALRSFLDWQVSRDMLAANPAKGIATPRNGRHLPKNIDVDDVNQLL 124 Query: 184 SFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD 239 + R E + GLR S+ +H+ K V + Sbjct: 125 EIDLTDPLAIRDRTMLEVMYGGGLRLSELVNMDCRHVDLEAGEVWVLGKGSKERRVPIGR 184 Query: 240 GFMKLLAMTPIGKETFFINN-------DKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290 + + + F + +++A F K G+ + H +R Sbjct: 185 TAVSWIQQWLPLRTAFNPGDDALFLSSRGSRISARNVQKRFAEWGIKQGLSSHIHPHKLR 244 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 AT ++ + G + + YT D L Sbjct: 245 HSFATHLLESSGDLRAVQELLGHANLSTTQIYTH-LDFQHLA 285 >gi|258511717|ref|YP_003185151.1| tyrosine recombinase XerD [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478443|gb|ACV58762.1| tyrosine recombinase XerD [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 294 Score = 129 bits (323), Expect = 9e-28, Method: Composition-based stats. Identities = 44/274 (16%), Positives = 91/274 (33%), Gaps = 23/274 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHTP- 130 I + L+ N+ S+ + R + + K Sbjct: 5 IRTFLDHLRLERGLSENTATSYARDLADFSQYLAREQRTMRDADRTAVLRYLSDLKRRGM 64 Query: 131 --SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 ++ + ++++R F++ +R+ + +P ++E R ++ED+++ Sbjct: 65 KSTTIARRMSALRSFFRYLLREGVLQADPTANIEVAAPDEHLPRVVSEEDVERLIGAVRR 124 Query: 189 ----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243 G + R E L +G+R S+ ++ ++ I+ V L + Sbjct: 125 PDAMGLRDRAMLETLYATGVRVSELLALSLEDVELAAGFIRVFGKGKKERVVPLGEIAQD 184 Query: 244 LLAMTPIGKET----------FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRK 291 L + F+N ++M F K A +AGV + H +R Sbjct: 185 ALGLYLRYGRPLLVRDRGESAVFLNRLGRRMTRQGFWNILKGYARQAGVSAEVTPHTLRH 244 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKG 325 AT + GA + G + E YT Sbjct: 245 SFATHLLEGGADLRVVQELLGHADISTTERYTHV 278 >gi|289434561|ref|YP_003464433.1| integrase/recombinase XerC [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170805|emb|CBH27347.1| integrase/recombinase XerC [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 300 Score = 129 bits (323), Expect = 9e-28, Method: Composition-based stats. Identities = 37/280 (13%), Positives = 94/280 (33%), Gaps = 27/280 (9%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHIRSGVE 124 + L +Y S + + N+ ++E+ R + + + + + ++ Sbjct: 7 WEQLFLDYLHSE--RNYSENTSTAYENDLIDFRRFLNEQAITEYNQVTFLDVRIYLTELK 64 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + + ++ + ++S+R + + +R+ + NP V K + + + E+M+ Sbjct: 65 QKSFSRTTVARKISSLRSFYTFLLRENVITENPFTYVSHAKNQLRLPKFFYSEEMEALFQ 124 Query: 185 FWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF------------SIKTQ 227 E + R+ E L +G+R S+ + + + Sbjct: 125 VVYEDNETLTLRDRVLLEVLYGTGIRVSECAGILLTDIDKTYQAILIRGKGNKERYVPFG 184 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285 + D ++L+ ++ IN+ + +KA + Sbjct: 185 AYAEDAITDYLDSRIELMKHFNKTHDSLLINHYGDPLTTRGIRYCLTKIISKASLTRKIH 244 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 H +R AT + GA + G ++ + YT Sbjct: 245 PHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHV 284 >gi|69246761|ref|ZP_00604109.1| Phage integrase:Phage integrase, N-terminal SAM-like [Enterococcus faecium DO] gi|257878024|ref|ZP_05657677.1| phage integrase [Enterococcus faecium 1,230,933] gi|257881190|ref|ZP_05660843.1| phage integrase [Enterococcus faecium 1,231,502] gi|257884853|ref|ZP_05664506.1| phage integrase [Enterococcus faecium 1,231,501] gi|257889777|ref|ZP_05669430.1| phage integrase [Enterococcus faecium 1,231,410] gi|257892286|ref|ZP_05671939.1| phage integrase [Enterococcus faecium 1,231,408] gi|261207608|ref|ZP_05922293.1| phage integrase [Enterococcus faecium TC 6] gi|289565120|ref|ZP_06445573.1| tyrosine recombinase XerC [Enterococcus faecium D344SRF] gi|293556768|ref|ZP_06675331.1| tyrosine recombinase XerC [Enterococcus faecium E1039] gi|293563426|ref|ZP_06677875.1| tyrosine recombinase XerC [Enterococcus faecium E1162] gi|293568161|ref|ZP_06679497.1| tyrosine recombinase XerC [Enterococcus faecium E1071] gi|294614817|ref|ZP_06694712.1| tyrosine recombinase XerC [Enterococcus faecium E1636] gi|294617496|ref|ZP_06697127.1| tyrosine recombinase XerC [Enterococcus faecium E1679] gi|294622307|ref|ZP_06701350.1| tyrosine recombinase XerC [Enterococcus faecium U0317] gi|68195115|gb|EAN09575.1| Phage integrase:Phage integrase, N-terminal SAM-like [Enterococcus faecium DO] gi|257812252|gb|EEV41010.1| phage integrase [Enterococcus faecium 1,230,933] gi|257816848|gb|EEV44176.1| phage integrase [Enterococcus faecium 1,231,502] gi|257820691|gb|EEV47839.1| phage integrase [Enterococcus faecium 1,231,501] gi|257826137|gb|EEV52763.1| phage integrase [Enterococcus faecium 1,231,410] gi|257828665|gb|EEV55272.1| phage integrase [Enterococcus faecium 1,231,408] gi|260077991|gb|EEW65697.1| phage integrase [Enterococcus faecium TC 6] gi|289163127|gb|EFD10974.1| tyrosine recombinase XerC [Enterococcus faecium D344SRF] gi|291589151|gb|EFF20963.1| tyrosine recombinase XerC [Enterococcus faecium E1071] gi|291592279|gb|EFF23893.1| tyrosine recombinase XerC [Enterococcus faecium E1636] gi|291596236|gb|EFF27498.1| tyrosine recombinase XerC [Enterococcus faecium E1679] gi|291598199|gb|EFF29297.1| tyrosine recombinase XerC [Enterococcus faecium U0317] gi|291601100|gb|EFF31389.1| tyrosine recombinase XerC [Enterococcus faecium E1039] gi|291604687|gb|EFF34172.1| tyrosine recombinase XerC [Enterococcus faecium E1162] Length = 301 Score = 129 bits (323), Expect = 9e-28, Method: Composition-based stats. Identities = 43/283 (15%), Positives = 90/283 (31%), Gaps = 29/283 (10%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFDYRKITTKHIRSGVESR 126 T + Y + ++ ++E + +SGD D K +R + + Sbjct: 5 TWEQKFLRYL--IVERGYSEKTKEAYEEDILHFKHFLEESGDADLLKAEYFTVRVYLSAL 62 Query: 127 K-----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 ++ +S + + S+R +++ +++E + NP V K+ R + + +MQ Sbjct: 63 ADHRPSYSRNSISRKIASLRSFYQYLLKEEVIKENPFSYVHLKKKNLRLPRFFYENEMQA 122 Query: 182 FKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVE 236 + R E L SG+R S+ V + + + K Sbjct: 123 LFDSVAGDSPLDLRNRALLEVLYGSGIRLSECSSLSVSDIDFDSEVMLIHGKGNKERYAP 182 Query: 237 LPDGFMKLLA------------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN- 283 L L + F+N+ + + T K+ ++ Sbjct: 183 LGSFAQDALQEYFREGRQVLMTKYHEEHDIVFVNHHGKPITPTGIEYVLNQMIKKSSLDS 242 Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 H +R AT + GA + G + + Y Sbjct: 243 DIHPHMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHV 285 >gi|291457670|ref|ZP_06597060.1| tyrosine recombinase XerD [Bifidobacterium breve DSM 20213] gi|291380723|gb|EFE88241.1| tyrosine recombinase XerD [Bifidobacterium breve DSM 20213] Length = 309 Score = 128 bits (322), Expect = 9e-28, Method: Composition-based stats. Identities = 40/288 (13%), Positives = 94/288 (32%), Gaps = 32/288 (11%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126 L ++ LA + ++ES ++ + G I + + + + Sbjct: 6 FGTLREQFLVHIGIERGLAKATVSAYESDLNKYVAWLQTHGITKPDDIAKQDVEDYIAAL 65 Query: 127 KHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 SA + L S+ ++A+ Q V+ + SV+ PK + + +++ + Sbjct: 66 DADGESARSKARRLASIHEFHRFALAQHAVSADVAASVKAPKGASVLPDVLSVDEVSRLL 125 Query: 184 SFWSEG-------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT----- 231 + G + + EF+ +G R S++ + + ++ G+ Sbjct: 126 DAAAVGGSTDPVVLRDKALLEFMYATGCRVSEAVGTNLDDIDLEEKVVRLMGKGSKQRLV 185 Query: 232 IITVELPDGFMKLLAM-----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280 + + + L + F+N ++++ K +A Sbjct: 186 PLGSYARNSVVAYLNAGRGELERRSTAKVPERRALFLNKRGKRISRQSVWEIVKTAGGRA 245 Query: 281 GV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 + H +R AT GA + G +V + YT + Sbjct: 246 DITKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVS 293 >gi|225630477|ref|YP_002727268.1| site-specific recombinase, phage integrase family [Wolbachia sp. wRi] gi|225592458|gb|ACN95477.1| site-specific recombinase, phage integrase family [Wolbachia sp. wRi] Length = 306 Score = 128 bits (322), Expect = 9e-28, Method: Composition-based stats. Identities = 40/282 (14%), Positives = 85/282 (30%), Gaps = 29/282 (10%) Query: 71 LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS-----GDFD---YRKITTKHIRS 121 L +I ++ + S + N+ S+ +I G+ + + ++ +RS Sbjct: 3 LGSIIEKWYEWLRCNRSYSPNTLESYMRDLKDLISFLNTHIGGEVNVGTLKNLSIPELRS 62 Query: 122 GVESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + SR +A + L+ +R FK+ + S+ RP ++ + + + Sbjct: 63 WLTSRYARGVNARSNTRALSVIRNFFKYIKNNHNIDNEAVFSLSRPIQRRTLPKALSIPN 122 Query: 179 MQQFKSFW--------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230 ++ + L +GLR S++ V + N T K Sbjct: 123 IKTLLKEMKLSDLGEPWVVKREIAIIVLLYGTGLRISEALNLRVSDINNESLI-VTGKGD 181 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQ------KMNATQFSIWFKAKATKAGVN- 283 V + K + K+ T + + + Sbjct: 182 KQRQVFILPVVKKCIQEYIKACPYLDEAQHLFVGVRGKKLGRTYVANRLQKIRRMLNLPE 241 Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 S H R AT + G +++ + YT Sbjct: 242 ILSPHAFRHSFATHLLQEDIDIRSIQQLLGHSSLETTQIYTH 283 >gi|241758661|ref|ZP_04756775.1| tyrosine recombinase XerD [Neisseria flavescens SK114] gi|241321172|gb|EER57368.1| tyrosine recombinase XerD [Neisseria flavescens SK114] Length = 293 Score = 128 bits (322), Expect = 9e-28, Method: Composition-based stats. Identities = 44/278 (15%), Positives = 102/278 (36%), Gaps = 19/278 (6%) Query: 69 TTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVES 125 ++ LI + +S L+ N+ S+ ++ + + D+ + V + Sbjct: 2 MSMDDLIDKLLESLWLQDRLSHNTLQSYRRDLVKVAARLAECGQDWLSADEFALSDSVYA 61 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 +S + L++ + ++ W A NP ++ PK + + T+ + + Sbjct: 62 EGEKSTSQARALSACKRMYGWLEETGQRADNPTRFLKAPKSERKLPTLITEAQIDALLAA 121 Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-----------TG 230 G + + E + +GLR +++ + + + + SI+T Sbjct: 122 PDVETSHGLRDKALLEVMYATGLRVTEAVKLTLSDIDLHRGSIRTIGKGDKLRLVPLGQE 181 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGV 289 VE + L + + F++ + ++ + K A AG+ + S HG+ Sbjct: 182 AAYWVERYCNESRPLLLKNKICDEVFVSQKRSGISRQLAWMIVKEYAEAAGIASLSPHGL 241 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 R AT + G + G ++ + YT A+ Sbjct: 242 RHAFATHLVNHGVDLRSVQMMLGHSDINTTQIYTHVAN 279 >gi|15604648|ref|NP_221166.1| site-specific tyrosine recombinase XerC [Rickettsia prowazekii str. Madrid E] gi|34223090|sp|Q9ZCE0|XERC_RICPR RecName: Full=Tyrosine recombinase xerC gi|3861343|emb|CAA15242.1| PROBABLE INTEGRASE/RECOMBINASE RIPX (xerC) [Rickettsia prowazekii] gi|292572467|gb|ADE30382.1| Tyrosine recombinase XerC [Rickettsia prowazekii Rp22] Length = 305 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 44/284 (15%), Positives = 97/284 (34%), Gaps = 28/284 (9%) Query: 68 PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRS 121 +++ LI +++K + + N+ I++ + + I T IR Sbjct: 3 DISIQELIKQWQKYLILQKNYSNNTVIAYNNDLKHFLEFMNYYNSELVTLNHIKTADIRL 62 Query: 122 GVESRK------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 T SS + L++++ +K+ + + + S++ PK+ + + Sbjct: 63 IRSWLAKRKCENFTASSIARGLSTVKNFYKFLEKTLLLNNHIIFSIKSPKKAKLLPKGLS 122 Query: 176 KEDMQQFKSFW-------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228 +D+ + + + +GLR S++ HLQN F K Sbjct: 123 VDDVLISLEHIEEYGNVKWVELRNKALIVLIYAAGLRISEALSITKLHLQNLEFIKIIGK 182 Query: 229 TGTIITVEL-------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 + ++++L E F +K+ + F+ G Sbjct: 183 GSKERIIPWLPLTKNLITKYLEILPYKLDENEPIFRGRQGKKLQPSVFNRELIKLKRIYG 242 Query: 282 VN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + +AH R A+ + GA + G K++ + YT Sbjct: 243 LPEYLTAHSFRHSFASHLLEYGADLRSIQELLGHKSLSTTQKYT 286 >gi|148543941|ref|YP_001271311.1| phage integrase family protein [Lactobacillus reuteri DSM 20016] gi|184153337|ref|YP_001841678.1| phage integrase [Lactobacillus reuteri JCM 1112] gi|227364850|ref|ZP_03848897.1| phage integrase family protein [Lactobacillus reuteri MM2-3] gi|325682524|ref|ZP_08162041.1| phage integrase family site-specific recombinase [Lactobacillus reuteri MM4-1A] gi|148530975|gb|ABQ82974.1| phage integrase family protein [Lactobacillus reuteri DSM 20016] gi|183224681|dbj|BAG25198.1| phage integrase [Lactobacillus reuteri JCM 1112] gi|227070113|gb|EEI08489.1| phage integrase family protein [Lactobacillus reuteri MM2-3] gi|324978363|gb|EGC15313.1| phage integrase family site-specific recombinase [Lactobacillus reuteri MM4-1A] Length = 386 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 45/368 (12%), Positives = 102/368 (27%), Gaps = 52/368 (14%) Query: 15 RTRHGKIIYYFRK--GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 R R K Y F G+R + ++ A + Sbjct: 6 RKRGKKWYYRFDIADKDGKRRQYERVGGDSYKEAMHRLRVALELYENTGAVTNTDKISTH 65 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHT-- 129 + + +L+ N+++++ + G + K+T + I+ + + Sbjct: 66 DYFEFWYDNYVKTNLSKNTQLNYRHVLDKYVQPTLGIYQLSKVTPELIQKTINKIADSTE 125 Query: 130 ---------PSSAIQFLTSMRVLFKWAVRQEYVAINPCL------SVERPKRKTEGIRPW 174 + L ++ F+ AV ++ PK E ++ Sbjct: 126 YKPDHSRLHGHTVEIILMVIKEGFRQAVHPWHILTQSPAEYVRQPKYNHPKTTREDLKII 185 Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-- 232 T + Q + G L Y+G+R + ++ I + Sbjct: 186 TLQQFNQLLEQFPLGHPFHLPLLISFYTGMRRGEVAGLEWDNVSLPDAEINVTQQMKQYS 245 Query: 233 ---------------ITVELPDGFMKLLA--------------MTPIGKETFFINNDKQK 263 T+ + D + L + + Sbjct: 246 KTDVRLGKLKTAASYRTIAIGDQLIHALKVQRRLQNENRLRYGKNYHESNFVCTKENGKP 305 Query: 264 MNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETY 322 + + + G + H +R AT+ +AGA+A E+ G + +TY Sbjct: 306 VTPNSIKYYASTVTKELGFPFNFHSLRHTHATMLLEAGASAKEVQVRLGHNKIATTLDTY 365 Query: 323 TKGADRIR 330 +++ + Sbjct: 366 VHLSNKKK 373 >gi|24215183|ref|NP_712664.1| integrase/recombinase XerD [Leptospira interrogans serovar Lai str. 56601] gi|45657354|ref|YP_001440.1| putative integrase/recombinase protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|34222802|sp|Q7ZAM7|XERD_LEPIN RecName: Full=Tyrosine recombinase xerD gi|73920480|sp|Q72SA5|XERD_LEPIC RecName: Full=Tyrosine recombinase xerD gi|24196257|gb|AAN49682.1| integrase/recombinase XerD [Leptospira interrogans serovar Lai str. 56601] gi|45600593|gb|AAS70077.1| putative integrase/recombinase protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 298 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 43/276 (15%), Positives = 90/276 (32%), Gaps = 24/276 (8%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVES---RKHT 129 EY S L+ NS S+ ++ K+ I + RK + Sbjct: 12 FQEYL-SVE-KGLSDNSIYSYGYDLNKFKNFLEKEHIDFLKVQADDIMRFLNEEKDRKIS 69 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + + + ++R +K+ ++ + NP +E P+ T++++++ + E Sbjct: 70 SKTIAREVVAIRQFYKFLKDEKKLDTNPTEKIETPEVMRSIPDYLTQDEIEELFASIKED 129 Query: 190 ----SQPRLAFEFLLYSGLRCSDSCRAG-VQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 + + FE L SGLR S++C + K G V + + + Sbjct: 130 NLYELRDKCIFELLYSSGLRISEACNLRLNDMDLEGMTLTVEGKGGRQRLVPFGEKSLDI 189 Query: 245 LAMTPIGKETFFINNDKQ----------KMNATQFSIWFKAKATKAGV--NKSAHGVRKF 292 L F + + +N + + + H +R Sbjct: 190 LNRYLKQSRPFILKSRNCEYLFVSKKGSYINRKSVWRLLNHYIKRTSILKKVTPHTLRHS 249 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 AT + A + G + + YT A++ Sbjct: 250 FATHLLENHADLKSVQELLGHIDIATTQIYTHMANK 285 >gi|329724319|gb|EGG60831.1| tyrosine recombinase XerC [Staphylococcus epidermidis VCU144] Length = 296 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 35/265 (13%), Positives = 93/265 (35%), Gaps = 20/265 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVESRKHTPSSAIQFLTS 139 + + + S+ Q + T ++ + + S + ++ + +++ Sbjct: 16 RNFSEYTLKSYHDDLVQFNNFLEREHLQLETFEYKDARNYLAFLYSNQLKRTTVSRKIST 75 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPRLA 195 +R +++ + Q+ INP + + PK++ + + +E+M Q + +G + ++ Sbjct: 76 LRTFYEFWMTQDNSIINPFVQLVHPKKEKYLPQFFYEEEMEALFQTVEHDNKKGIRDKVI 135 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254 E L +G+R S+ ++ + N K + + + + + Sbjct: 136 IELLYATGIRVSELINIKLKDIDMNLPGVKVLGKGNKERFIPFGEFCRQSIERYLEEFQP 195 Query: 255 FFINNDKQ--------KMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGATA 304 + N + + AGV + H +R AT + GA Sbjct: 196 KQLANHDYLIVNMKGDPITERGVRYVLNDVVKRTAGVNDIHPHKLRHTFATHLLNQGADL 255 Query: 305 HELMATYGWKTVDQAETYTKGADRI 329 + + G + YT +++ Sbjct: 256 RTVQSLLGHANLSTTGRYTHVSNQQ 280 >gi|329962250|ref|ZP_08300256.1| putative tyrosine recombinase XerC [Bacteroides fluxus YIT 12057] gi|328530358|gb|EGF57235.1| putative tyrosine recombinase XerC [Bacteroides fluxus YIT 12057] Length = 294 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 43/276 (15%), Positives = 90/276 (32%), Gaps = 24/276 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSGVESRKH 128 L + + + + + + S ++ GD I + +R + S Sbjct: 3 LTDSFLDYLLYERNYSEGTVKYYRSDILELQDFGKEMLGDLTPSDIDAELVREWIASLMD 62 Query: 129 TP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 S+ + L+S+R +K+ +R+ VA++P + PK+K + +M + Sbjct: 63 RGCASSTINRKLSSIRAYYKFLLRRGEVAVDPLRKITGPKKKKPLPVFLREGEMDKLLDD 122 Query: 186 W-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPD 239 EG + L E +G+R S+ + + + T K + + Sbjct: 123 TDFGEGFEGCRNHLIIEMFYATGMRLSELIGLDDKDVDYSASLIKVTGKRNKQRLIPFDE 182 Query: 240 GFMKLLAMTPIGKETFFINN---DKQKMNATQFSIWFKAKATKAGV-------NKSAHGV 289 + + + N + A K + +S H + Sbjct: 183 ELKFSMQEYVNVRNETIPVRSDAFFVRENGKRLYRSIVAYLVKRNLSKVVTVKKRSPHVL 242 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 R AT + GA + G +++ E YT Sbjct: 243 RHTFATAMLNNGADLGSIKELLGHESLATTEVYTHT 278 >gi|166713420|ref|ZP_02244627.1| site-specific tyrosine recombinase XerD [Xanthomonas oryzae pv. oryzicola BLS256] Length = 323 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 46/312 (14%), Positives = 99/312 (31%), Gaps = 37/312 (11%) Query: 46 AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK 105 A L P + ++ ++ + + +A + S+ + + R Sbjct: 7 AERRQLAQQLPPLQAADAGV-----IERFLDRFWAE---QGVARQTLESYRRDLEGLARW 58 Query: 106 S-----GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 G + ++P S + L+++R + W +R + +P Sbjct: 59 RDGAGGGLLGIDRAALFDYLRWRAQATYSPRSTARLLSTLRAFYGWCLRDGVRSDDPTAL 118 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQH 216 ++ P+ + T+ ++ + + + R E + +GLR S+ Sbjct: 119 IDPPQLPRSLPKALTESQIEALLAAPEVDTPAGLRDRAMLELMYAAGLRVSELVNLPAVG 178 Query: 217 LQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIG----------------KETFFINN 259 + ++ V L + L + FI+ Sbjct: 179 VNLRQGVLRVTGKGSKDRLVPLGEESQHWLERYLRQARPLLAANKPVAAVDGQVPLFIDA 238 Query: 260 DKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTV 316 +Q ++ F K A AG++ S HG+R AT + GA L G ++ Sbjct: 239 ARQALSRQHFWALVKRYAAVAGIDPATVSPHGLRHSFATHLLNHGADLRALQMLLGHSSL 298 Query: 317 DQAETYTKGADR 328 + YT A + Sbjct: 299 STTQIYTLVARQ 310 >gi|298373800|ref|ZP_06983789.1| tyrosine recombinase XerD [Bacteroidetes oral taxon 274 str. F0058] gi|298274852|gb|EFI16404.1| tyrosine recombinase XerD [Bacteroidetes oral taxon 274 str. F0058] Length = 307 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 39/270 (14%), Positives = 90/270 (33%), Gaps = 29/270 (10%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDY----RKITT-KHIRSGVESRKHTPSSAIQFLTS 139 S++ N+ +++ + +T K++ + + S + ++ Sbjct: 20 KSMSENTVVAYIRDLHTLSEYLDGIGIDYRQATLTNLKNLIVELTDLGISGRSRARMISG 79 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----------SE 188 ++ +++ + + +P +E+P+ + E++ + + Sbjct: 80 IKSFYRFCIIDRLLEADPTEQLEQPQLPLYLPDVLSVEEIDRIIVTIDLSEVDKYTKLNI 139 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-----------KTQKTGTIITVEL 237 G + E L SG+R S+ A + + + I I + Sbjct: 140 GHRNLAIVEVLYGSGVRVSELVYAKISDINFDEKFIKILGKGNKERLVPLSDPAIRAINN 199 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSAT 295 ++L P ++ F+N +M + K KAG+ K+ H R AT Sbjct: 200 WFLARRVLTPKPKHEDYIFLNRRGARMTRQMVFLAIKNMVEKAGITKTVSPHTFRHSFAT 259 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKG 325 + GA + G ++ E YT Sbjct: 260 HLLENGANLRAIQQLLGHASITTTEIYTHV 289 >gi|71274794|ref|ZP_00651082.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Dixon] gi|71897599|ref|ZP_00679844.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Ann-1] gi|71902531|ref|ZP_00684453.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Ann-1] gi|71164526|gb|EAO14240.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Dixon] gi|71727745|gb|EAO30016.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Ann-1] gi|71732502|gb|EAO34555.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Ann-1] Length = 324 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 52/294 (17%), Positives = 96/294 (32%), Gaps = 35/294 (11%) Query: 66 KKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSG 122 + TT+ + + K L+ ++ S+ + + R + +T + Sbjct: 22 EDATTIAHCLDALWIKH----GLSRHTLNSYRRDLEGLARWNNGRAGPLATLTPPALLDY 77 Query: 123 VESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + R ++P S + L+ +R F +AV + NP + P + T+ + Sbjct: 78 LTWRTQQHYSPLSNARLLSVLRTFFSYAVECGWRNDNPSTLLAHPVLPHPLPKALTESQI 137 Query: 180 QQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIIT 234 + + EG + R E + +GLR S+ V L ++ G Sbjct: 138 EALLAAPSIETPEGLRNRAMLELMYAAGLRVSELVTLPVAMLNRRQGVLRITGKGGKERL 197 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKM-----------------NATQFSIWFKAKA 277 V L + L + + QF W K A Sbjct: 198 VPLGEESQHWLQRYLEQARPSLAADKPIPADSDGDVPLFINTNLKRLSRQQFWRWIKHYA 257 Query: 278 TKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 AG+ S H +R AT + GA L G +++ + YT A + Sbjct: 258 ALAGIAPNKVSPHVLRHSFATHLLNHGADLRALQMLLGHRSISTTQIYTLIARQ 311 >gi|83590631|ref|YP_430640.1| Phage integrase [Moorella thermoacetica ATCC 39073] gi|83573545|gb|ABC20097.1| Phage integrase [Moorella thermoacetica ATCC 39073] Length = 390 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 53/377 (14%), Positives = 113/377 (29%), Gaps = 49/377 (12%) Query: 14 ERTRHGKIIYYFRKG-----HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 + G+ G RR+ L + + AL + Sbjct: 13 YQRPDGRWTAQITVGIDHEGKQRRLTLYGKSKKEVLEKLTQALYQQ----QNGGFIEPSK 68 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR- 126 T++ ++ + L ++ S+E+ +I G +K+ I+ S+ Sbjct: 69 ITVEQWLNRWLTDYAKPHLRQSTWESYETVLRLHVIPTLGSIPLKKLQPADIQRLYASKL 128 Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 +P+ + A + NP + + P+ + ++P E +++F Sbjct: 129 ESGLSPTRVRYIHVVLHEAMSQARESGLLLQNPTEAAKPPRHPKKKVQPLNPEQVKRFLE 188 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------------ 232 + AF L +GLR + Q L ++ +++ Sbjct: 189 TAKQDP-LYPAFLLALGTGLRRGEILGLRWQDLDLQKGILQVRQSLIRTREGLKFEEPKT 247 Query: 233 ------------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274 + +L + F + + + F+ +F Sbjct: 248 EKSRRQIPLPPSVVAALKRHKAWVNQNKLILGPDYEDHDLVFPVENGRPRDPKGFAEYFN 307 Query: 275 AKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLG 332 KAG+ H +R AT+ G + G TV + Y+ L Sbjct: 308 RLLDKAGLPHIRLHDLRHTHATLLLLEGVHPKVVQERLGHSTVSITLDIYSHILPG--LQ 365 Query: 333 IKNSRRISSVV-DSDDP 348 K + RI ++ ++P Sbjct: 366 EKAAERIDGLLQPKENP 382 >gi|308233786|ref|ZP_07664523.1| tyrosine recombinase XerD [Atopobium vaginae DSM 15829] gi|328943765|ref|ZP_08241230.1| tyrosine recombinase XerD [Atopobium vaginae DSM 15829] gi|327491734|gb|EGF23508.1| tyrosine recombinase XerD [Atopobium vaginae DSM 15829] Length = 319 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 37/298 (12%), Positives = 91/298 (30%), Gaps = 42/298 (14%) Query: 69 TTLKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVE 124 T + EY +V++ S++ + D IT + + + + Sbjct: 2 DTFDTIKEEYLNYVLIERGYSVHTLHSYDHDLTLYLSFLQSHDIDDPAYITREIVEAYIA 61 Query: 125 SR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + S+ + ++S++ K+ V ++ +P +++ PK+ T++ + Sbjct: 62 HLFHEGMSSSTVQRAVSSIKGFHKFMVVEQICENHPTTNLKLPKKSFHLPDVLTQDQIIH 121 Query: 182 FKSFWSEGS----------------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219 + + + E L GLR S+ C + Sbjct: 122 LLDDPFKPQLLPAPKLTARKALSLKPQACFYRDKAILEMLYGCGLRVSELCGLNQGDVLV 181 Query: 220 NIFSIKTQKT-GTII-----------TVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT 267 + ++ + LLA +P + F++ +++ Sbjct: 182 SDELVRVFGKGSKERLVPCLGTALESYQNYCTKWRALLACSPKTTDAVFLSVRGTRISRQ 241 Query: 268 QFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + + G+ H +R AT + G + G ++ + YT Sbjct: 242 AVFSLVERYGSYVGIKGLHPHTLRHSYATHMLEGGMNLRIVQELLGHASISTTQLYTH 299 >gi|325919208|ref|ZP_08181257.1| tyrosine recombinase XerD subunit [Xanthomonas gardneri ATCC 19865] gi|325550308|gb|EGD21113.1| tyrosine recombinase XerD subunit [Xanthomonas gardneri ATCC 19865] Length = 323 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 45/312 (14%), Positives = 96/312 (30%), Gaps = 37/312 (11%) Query: 46 AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK 105 A L P + ++ ++ + + +A + S+ + + R Sbjct: 7 AERRQLAQQLPPLQAADASA-----IERFLDRFWAE---NGVARQTLDSYRRDLEGLARW 58 Query: 106 S-----GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 G + +++P S + L+++R + +R+ + +P Sbjct: 59 RDGAGGGLLGVDRAAVFDYLRWRSEARYSPRSTARLLSTLRAFYGLCLREGLRSDDPTAL 118 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQH 216 ++ P + T+ ++ + G + R E + +GLR S+ Sbjct: 119 IDPPHLPRSLPKALTESQIEALLAAPDIDSPLGLRDRAMLELMYAAGLRVSELVNLPAVG 178 Query: 217 LQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFINNDK-------------- 261 + ++ V L + L ++ Sbjct: 179 VNLRQGVLRVTGKGSKDRLVPLGEESQHWLERYLHEARPLLASHKPVASVDGQVPLFVDA 238 Query: 262 --QKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTV 316 Q + QF K A AG++ S HG+R AT + GA L G ++ Sbjct: 239 ARQPPSRQQFWALVKRYAAVAGIDPDTVSPHGLRHSFATHLLNHGADLRALQMLLGHSSL 298 Query: 317 DQAETYTKGADR 328 + YT A + Sbjct: 299 STTQIYTLVARQ 310 >gi|299538025|ref|ZP_07051311.1| integrase-recombinase protein [Lysinibacillus fusiformis ZC1] gi|298726607|gb|EFI67196.1| integrase-recombinase protein [Lysinibacillus fusiformis ZC1] Length = 276 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 39/265 (14%), Positives = 85/265 (32%), Gaps = 13/265 (4%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSGVESRKHTPS 131 + L+ + + Q G+ I + +E + P Sbjct: 7 QAFFNDHQAR-LSPETIRGYRIALTQFFTFCVKGFGEVKATDIRAW--LASLEEKGLKPR 63 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 S L +++ + + + + V NP L+V PK ++ ++ + + Sbjct: 64 SIHAKLAALKSFYNYCMEENQVKKNPTLTVRAPKIDDSLPYYLSRREVALLQELTRHDPR 123 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDGFMK----LL 245 R E L +G+R S+ + ++ ++ I+ K V ++ L Sbjct: 124 NRAIVETLYTTGVRISELLQIKLEDVKWDTRQIWIRKGKGNKERFVLFSYDCLERLNTYL 183 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAH 305 A F N + ++ F+A + + G H +R A A+ Sbjct: 184 AHRKRESAYLFSNYWGKPLSHVFVEQQFQAFSEELGFRVRPHTLRHTFAAHLAEKNMPQS 243 Query: 306 ELMATYGWKTVDQAETYTKGADRIR 330 + G ++ YT+ + R Sbjct: 244 YIQELLGHVNINSTRIYTRLMEHAR 268 >gi|154488853|ref|ZP_02029702.1| hypothetical protein BIFADO_02161 [Bifidobacterium adolescentis L2-32] gi|154082990|gb|EDN82035.1| hypothetical protein BIFADO_02161 [Bifidobacterium adolescentis L2-32] Length = 308 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 52/286 (18%), Positives = 92/286 (32%), Gaps = 36/286 (12%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVES--RKHT 129 Y K+ L+ N+R ++ S ++ + G D ++T + +R + + H Sbjct: 10 FDAYLKAN--RGLSANTRRAYRSDVEECLVALRKQGCVDLNEVTIEDLRLWMAKSSKNHA 67 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 SS + ++R F WA + + NP S++ PK + QQ E Sbjct: 68 RSSMARKTVAVRGFFAWAYDHDMASANPAASLQTPKIPDTLPAVLNETQAQQLMDRVDED 127 Query: 190 -----------------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGT 231 + E L +G+R ++ V + N T K Sbjct: 128 GMEARSQEPNMKKQAIALRDAAMLELLYATGMRVAELVGLDVADVTFGNRTVKVTGKGDK 187 Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQ----------KMNATQFSIWFKAKATKAG 281 + K L + ++ +A KAG Sbjct: 188 QRVMPFGAPADKALRDWLEHGRPVLCGDMSDDAFFLGSQGGRIGQRMVRKVVHDRARKAG 247 Query: 282 VN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 V S H +R +AT D GA E+ G ++ + YT + Sbjct: 248 VPDISPHALRHSAATHMLDGGADLREVQEMLGHSSLKTTQRYTHVS 293 >gi|310822341|ref|YP_003954699.1| Tyrosine recombinase XerC [Stigmatella aurantiaca DW4/3-1] gi|309395413|gb|ADO72872.1| Tyrosine recombinase XerC [Stigmatella aurantiaca DW4/3-1] Length = 300 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 45/294 (15%), Positives = 98/294 (33%), Gaps = 27/294 (9%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-GDFDYRKI--TTKHIRSGVESR 126 L L+ ++R + ++ ++ + G + T IR + + Sbjct: 4 LSPLLEKFRIHLEHEKGASPHTVRNYLIDLVDFEKYLVGTMKLSLLAGTHAAIRGYLGTL 63 Query: 127 K--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 H P+S + L S++ +K+ VRQ+ ++ +P V+ PK + +++ Sbjct: 64 SVDHAPASRGRRLASIKSFYKYLVRQKLLSASPAKLVKSPKLPKSLPKVLPVDEVFAILE 123 Query: 185 FW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPD 239 G + R E L GLR S+ C + + + ++ G + + Sbjct: 124 MPSLKTVLGLRDRAILEILYGGGLRISELCGLNLLDVDRSGRIVRVMGKGGKERLCPVNE 183 Query: 240 GFMKLL-------------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284 ++ L E F+N ++ + K + Sbjct: 184 PSIRALEAYLARRGELLATPHAGQDPEAMFLNYRGGRLTPRSIARHLDTYVVKCALTRKV 243 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKNSR 337 S H +R AT GA + G ++ + YT ++++ + Sbjct: 244 SPHALRHSFATHLLGGGADVRSIQELLGHASLSTTQRYTHVTVEQLQQVYDAAH 297 >gi|119026081|ref|YP_909926.1| site-specific tyrosine recombinase XerC [Bifidobacterium adolescentis ATCC 15703] gi|118765665|dbj|BAF39844.1| probable integrase [Bifidobacterium adolescentis ATCC 15703] Length = 329 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 51/286 (17%), Positives = 93/286 (32%), Gaps = 36/286 (12%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVES--RKHT 129 Y K+ L+ N+R ++ S ++ + G D ++T + +R + + H Sbjct: 31 FDAYLKAN--RGLSANTRRAYRSDVEECLVALRKQGCVDLNEVTIEDLRLWMAESSKNHA 88 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 SS + ++R F WA + + NP S++ PK + QQ E Sbjct: 89 RSSMARKTVAVRGFFAWAYDHDMASANPAASLQTPKIPDTLPAVLNETQAQQLMDRVDED 148 Query: 190 -----------------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGT 231 + E L +G+R ++ V + N T K Sbjct: 149 GMEARSQEPNMKKQAIALRDAAMLELLYATGMRVAELVGLDVADVTFGNRTVKVTGKGDK 208 Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQ----------KMNATQFSIWFKAKATKAG 281 + K L + +++ +A +AG Sbjct: 209 QRVMPFGAPADKALRDWLEHGRPVLCGDMSDDAFFLGSQGGRIDQRMVRKVVHDRAREAG 268 Query: 282 VN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 V S H +R +AT D GA E+ G ++ + YT + Sbjct: 269 VPDISPHALRHSAATHMLDGGADLREVQEMLGHSSLKTTQRYTHVS 314 >gi|110835195|ref|YP_694054.1| integrase/recombinase XerC [Alcanivorax borkumensis SK2] gi|122959294|sp|Q0VM16|XERC_ALCBS RecName: Full=Tyrosine recombinase xerC gi|110648306|emb|CAL17782.1| integrase/recombinase XerC [Alcanivorax borkumensis SK2] Length = 307 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 37/286 (12%), Positives = 95/286 (33%), Gaps = 24/286 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLTSMR 141 L+ ++ ++ + G + +T +R + + + + + + L+++R Sbjct: 23 RRLSPHTVNGYQRDLIEARTLLGSQPWDTLTVHDMRSLAASLHRQGKSGKTIQRMLSTLR 82 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-----QPRLAF 196 F++ +R+ NP + + PK + + + + S + + Sbjct: 83 TFFRYLMREGLARDNPAIDIRAPKSGKRLPKALDVDQVSHLLDAGTSNSEPLALRDQAIM 142 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKLLAMTPIGKETF 255 E L GLR ++ + + + + T K + + + + + Sbjct: 143 ELLYACGLRLAELLSLNLDSIDLHESQLLVTGKGNKTRQLPVGKPALTAVRRWLQVRPML 202 Query: 256 ---------FINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATA 304 FI+ + ++++ + K A + G++ H +R AT ++ Sbjct: 203 IKSSDQNALFISKNGRRLSPSSVQQRLKRHALERGLDAHLHPHKLRHSFATHLLESSGDL 262 Query: 305 HELMATYGWKTVDQAETYTKGADRIRLG---IKNSRRISSVVDSDD 347 + G + + YT D L R D D+ Sbjct: 263 RAVQELLGHADLATTQVYTH-LDFQHLAQVYDGAHPRAQRRKDDDE 307 >gi|313638152|gb|EFS03409.1| tyrosine recombinase XerC [Listeria seeligeri FSL S4-171] Length = 300 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 37/280 (13%), Positives = 95/280 (33%), Gaps = 27/280 (9%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHIRSGVE 124 + L +Y S + + N+ ++E+ R + + + + + ++ Sbjct: 7 WEQLFLDYLHSE--RNYSENTSTAYENDLIDFRRFLNEQAITEYSQVTFLDVRIYLTELK 64 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + + ++ + ++S+R + + +R+ + NP V K + + + E+M+ Sbjct: 65 QKSFSRTTVARKISSLRSFYTFLLRENVITENPFTYVSHAKNQLRLPKFFYSEEMEALFQ 124 Query: 185 FWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF------------SIKTQ 227 E + R+ E L +G+R S+ + + + Sbjct: 125 VVYEDNETLTLRDRVLLEVLYGTGIRVSECAGILLTDIDKTYQAILIRGKGNKERYVPFG 184 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285 + D ++L+ ++ IN+ + + +KA + Sbjct: 185 AYAEDAITDYLDSRIELMKHFNKTHDSLLINHYGEPLTTRGIRYCLTKIISKASLTRKIH 244 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 H +R AT + GA + G ++ + YT Sbjct: 245 PHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHV 284 >gi|51594547|ref|YP_068738.1| site-specific tyrosine recombinase XerC [Yersinia pseudotuberculosis IP 32953] gi|186893547|ref|YP_001870659.1| site-specific tyrosine recombinase XerC [Yersinia pseudotuberculosis PB1/+] gi|51587829|emb|CAH19432.1| putative integrase/recombinase [Yersinia pseudotuberculosis IP 32953] gi|186696573|gb|ACC87202.1| tyrosine recombinase XerC [Yersinia pseudotuberculosis PB1/+] Length = 303 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 47/278 (16%), Positives = 91/278 (32%), Gaps = 21/278 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGVESRKHTP 130 + + + L+ + S+ ++ + G ++ + +RS V K T Sbjct: 12 VEAFLRYLSIERQLSPLTVTSYRRQLSALMEIGEQMGLAHWQTLDAAQVRSLVSRSKRTG 71 Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 SS L+++R W V Q + NP V P+ + +++ + S Sbjct: 72 LHASSLALRLSALRSFLNWLVSQGVLPANPAKGVSTPRSGRHLPKNIDVDEINKLLSIDL 131 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243 + R E + +GLR S+ +H+ + K V L + Sbjct: 132 NDPLAVRDRAMLEVMYGAGLRLSELVGMNCKHVDLASGDVWVMGKGSKERKVPLGKTAVT 191 Query: 244 LLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 L + F+ N ++++A F K GV + H +R A Sbjct: 192 WLQHWLALRELFEPQDDAIFLANTGKRISARNVQKRFAEWGVKQGVSSHIHPHKLRHSFA 251 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 T ++ + G + + YT D L Sbjct: 252 THMLESSGDLRAVQELLGHANLTTTQIYTH-LDFQHLA 288 >gi|23465930|ref|NP_696533.1| integrase/recombinase [Bifidobacterium longum NCC2705] gi|34222807|sp|Q7ZAP1|XERD_BIFLO RecName: Full=Tyrosine recombinase xerD gi|23326639|gb|AAN25169.1| probable integrase/recombinase [Bifidobacterium longum NCC2705] Length = 308 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 46/288 (15%), Positives = 96/288 (33%), Gaps = 32/288 (11%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126 L ++ LA + ++ES + I G + IT + + + + Sbjct: 5 FTRLTEQFLIHIGVERGLATATVTAYESDIAKYIDWLETRGIHEPDAITKQDVEDYIAAL 64 Query: 127 KHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 SA + L S+ ++A+ Q V + +V+ PK + T +++ + Sbjct: 65 DQAGESARSKARRLASIHEFHRFALGQHAVTADVSAAVKAPKGASTLPDVLTVDEVTRLL 124 Query: 184 SFWSEG-------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITV 235 + G + + EF+ +G R S++ A + + + + K V Sbjct: 125 DAAAVGGSTDPVVLRDKALLEFMYATGCRVSEATGANLDDIDLDEHIARLMGKGSKQRLV 184 Query: 236 ELPDGFMKLLAMT---------------PIGKETFFINNDKQKMNATQFSIWFKAKATKA 280 L + + + F+N ++++ KA +A Sbjct: 185 PLGSYACRAITAYLNAGRGELEQRSSAKIPERRALFLNKRGKRISRQSVWEIVKATGERA 244 Query: 281 GV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 G+ H +R AT GA + G +V + YT + Sbjct: 245 GITKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVS 292 >gi|46201486|ref|ZP_00208119.1| COG4974: Site-specific recombinase XerD [Magnetospirillum magnetotacticum MS-1] Length = 305 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 38/283 (13%), Positives = 79/283 (27%), Gaps = 26/283 (9%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITT--KHIRSGVE 124 I + + + N+ ++ G + Sbjct: 5 FDRHIESFLEMMQVERGASPNTLDAYGRDLADFAEFLDGRGQSPLNAEGRSVAAYIARQA 64 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + + L+ ++ + +A + +P +++ P+ + KE++ Sbjct: 65 EIGMAARTQARRLSCLKQFYGFAFAERLRPDDPTANIDAPRLGRPLPKYLRKEEVTALLD 124 Query: 185 FWS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELP 238 +G E L +GLR S+ + + + + K V L Sbjct: 125 AARALEGRDGILMTALMETLYATGLRVSELVSLPLSAVARDPNVLVVRGKGSKERMVPLS 184 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKM-----------NATQFSIWFKAKATKAGVN---K 284 D L +ET + + + F+ A AG++ Sbjct: 185 DPARAALIAWKAERETMVPKSRPSRWLFPSSGRLGHLTRSGFAKMLARAAVLAGLDPFKV 244 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 S H +R A+ GA + G + E YT D Sbjct: 245 SPHVLRHSFASHLLAGGADLRSVQEMLGHADIATTEIYTHLID 287 >gi|297571163|ref|YP_003696937.1| integrase family protein [Arcanobacterium haemolyticum DSM 20595] gi|296931510|gb|ADH92318.1| integrase family protein [Arcanobacterium haemolyticum DSM 20595] Length = 313 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 45/295 (15%), Positives = 94/295 (31%), Gaps = 30/295 (10%) Query: 68 PTTLKWLISEYRKSAH-WGSLAVNSRISF---ESYFDQIIRKSGDFDYRKITTKHIRSGV 123 PT + ++ Y++ L+ ++ ++ + + K D + IR Sbjct: 11 PTQFEQILERYQRELELRRGLSAHTCRAYLHEARSLLEFVCKHSDDPATSLPEIDIRDMR 70 Query: 124 ESR------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 H+ +S + S+R +W + Y A +P ++ PK E T E Sbjct: 71 LWLADNQQAGHSRASIARHSASIRTFTRWLFKNAYTAADPGTQLKSPKVSNELPHVLTVE 130 Query: 178 DMQQFKSFWSEGS--------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229 ++ E + + E L + +R S+ V + + K Sbjct: 131 QARELLRVAKERTADGNALAIRDAAIVELLYATAIRVSELTGTDVSDVSPSSNLRVIGKG 190 Query: 230 GTIITVELPDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATK 279 V L ++ F+ ++++ Sbjct: 191 DKERIVPFGRPARNALMAWLDVRGTLLEKNPTEQALFVGARGKRIDPRTVRTLLTQLTKA 250 Query: 280 AGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLG 332 AG+ + H +R +AT D G+ + G ++ + YT A+R+R Sbjct: 251 AGLPDITPHDLRHSAATHLLDGGSDLRTVQEILGHSSIGTTQRYTHVSAERLRAA 305 >gi|298208960|ref|YP_003717139.1| putative tyrosine recombinase [Croceibacter atlanticus HTCC2559] gi|83848887|gb|EAP86756.1| putative tyrosine recombinase [Croceibacter atlanticus HTCC2559] Length = 298 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 48/290 (16%), Positives = 95/290 (32%), Gaps = 30/290 (10%) Query: 69 TTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY--------RKITTKHI 119 T + +Y+ L++NS S+ +++++ D IT + Sbjct: 1 MTWLQTLKDYQHYLKIERGLSLNSIKSYSYDVEKLMKFLEKNDLKTSPLKIDANITKAFV 60 Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + S + ++ ++ F + V ++Y NP +E P+ + + E++ Sbjct: 61 YDVAKHMNE--RSQARLISGLKSFFNYLVFEDYRETNPVDLIESPRIGRKLPDTLSLEEI 118 Query: 180 QQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIIT 234 + EG + R + L GLR S+ + L F T K Sbjct: 119 DNLIAHIDLSKPEGERNRAMIDTLYSCGLRVSELITLNLSDLFFEEGFIKVTGKGNKQRF 178 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMN-----------ATQFSIWFKAKATKAGVN 283 V + + KL+++ + K + K G+ Sbjct: 179 VPIAEHTQKLISIYKTEIRNHQDIKKGHEDTLFLNRRGRGLTRAMIFTIVKNLSEKCGLQ 238 Query: 284 KS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 K+ H R AT + GA + G +++ E Y D+ L Sbjct: 239 KTISPHTFRHSFATHLLENGADLRAIQQMLGHESITTTEIYMH-LDQTHL 287 >gi|167036461|ref|YP_001664039.1| phage integrase family protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320114886|ref|YP_004185045.1| integrase family protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166855295|gb|ABY93703.1| phage integrase family protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319927977|gb|ADV78662.1| integrase family protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 373 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 59/370 (15%), Positives = 122/370 (32%), Gaps = 47/370 (12%) Query: 17 RHGKIIYYF----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 + G R +G+R + T A AL K E TL+ Sbjct: 7 KRGSTYSIVVDVGRDENGKRKQKWISGFKTKKEA-EKALAEIIAKIEKNEFIEPSKITLQ 65 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH--- 128 I+E+ K A + +S +S + II G + +K+ I+ S K Sbjct: 66 QFINEWLKIYGEPKWAPKTLVSNKSLIDNYIIPNLGHIELQKLKPVEIQKFYNSLKEKQL 125 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + ++ + + K+AV+ +Y+A NPC VE PK+ + W E +++ + Sbjct: 126 SNTTINYVHRLLNQVLKFAVKWQYIAKNPCELVEAPKKDKKEFVTWNFEHVKKA-KKIFK 184 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF------- 241 + + LY+GLR + C + + +I ++T I Sbjct: 185 DTPIYIHVMIALYTGLRLGEICGLRWEDIDFKNQTITVRRTAQRIDGRFIFKEPKTETSK 244 Query: 242 ---------MKLLAMTPIGKETFFINNDKQKMN----------------ATQFSIWFKAK 276 +++L + + ++ + + F+ Sbjct: 245 GIISIPDFLVQILKQEKNKQLQNKLIFGEKYITEYEGFISVWEDGRFKEPDYVTKKFRKI 304 Query: 277 ATK-AGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKGADRIRLGI 333 K + + H +R AT+ +G + + Y+ + + Sbjct: 305 LKKQSDIPVIRFHDLRHTHATLMLRSGVDLKIISKRLRHGRISTTADFYSHV--DLEMDR 362 Query: 334 KNSRRISSVV 343 + R++ S + Sbjct: 363 EALRKLESNL 372 >gi|311695984|gb|ADP98857.1| phage integrase family protein [marine bacterium HP15] Length = 327 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 43/343 (12%), Positives = 98/343 (28%), Gaps = 32/343 (9%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 + G+ R R+ + + + + N + TLK Sbjct: 3 RKLPSGRWQVDLRTDGRGSKRIRKSFDSKAEAKRFETFVMAKRAEGREWNPSKADNRTLK 62 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS- 131 LI + + L + D + G+ R + + + + Sbjct: 63 QLIKLWFNAKGVH-LKDG--ERRKRCLDTMAEFLGNPIARTVKPTSFLAYRAHKIQKGAS 119 Query: 132 --SAIQFLTSMRVLFKWAVRQEYV-AINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--- 185 + L + ++ R + NP +VE + + T E ++ Sbjct: 120 KKTLNNHLGYLNAVYNQLNRLNEIDFDNPIRNVEMIRLDERELSWLTVEQIRHLLKTIED 179 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 +S+ L L +G R ++ ++H+Q + K+G +V + + + Sbjct: 180 FSQNPHVHLLTRICLATGARWGEAENLQLRHVQEGKLTFVNTKSGKSRSVPVSKELFEEI 239 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA----HGVRKFSATISADAG 301 F + F+ K+G+ H +R A+ G Sbjct: 240 RKHLKEHGCFSFSLS-----------AFRRALDKSGITLPPGQAAHVLRHTFASHFLMNG 288 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 L G + Y+ L ++ + +++ Sbjct: 289 GDIVTLQKILGHSHISMTLRYSH------LAPEHLSKAATLGP 325 >gi|254460911|ref|ZP_05074327.1| tyrosine recombinase XerC [Rhodobacterales bacterium HTCC2083] gi|206677500|gb|EDZ41987.1| tyrosine recombinase XerC [Rhodobacteraceae bacterium HTCC2083] Length = 306 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 41/289 (14%), Positives = 88/289 (30%), Gaps = 29/289 (10%) Query: 72 KWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSG 122 + + + ++ + N+ ++ + I G +ITT+ +R+ Sbjct: 9 RDALEHWLETQKSLKGGSENTIKAYSADTADFIGFMTSYKSEPQGLAALARITTRDMRAW 68 Query: 123 VESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW----- 174 + + + S + L+S++ ++W +E L++ PK + + RP Sbjct: 69 MAQTRGDEVSARSLARKLSSVKSFYRWLAEREGFEPTAVLTIRAPKFQKKLPRPLAVEAA 128 Query: 175 --TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 E ++ + ++ L GLR S++ + K G Sbjct: 129 KAMIETVEYQTAHTWVAARDSAVLTLLYGCGLRISEALGLTGADVPLPTALRILGKGGKE 188 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKM-------NATQFSIWFKAKATKAGVNKS 285 V + + + N N + G+ + Sbjct: 189 RVVPVLPAAREAVQAYLNICPYPLEPNAPLFRGIRGGALNPRAVQSVMAKARMQLGLPAT 248 Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R AT AG + G ++ + YT D RL Sbjct: 249 ATPHAMRHSFATHLLSAGGDLRSIQELLGHSSLSTTQAYT-AVDTARLM 296 >gi|254478334|ref|ZP_05091713.1| site-specific recombinase, phage integrase family [Carboxydibrachium pacificum DSM 12653] gi|214035692|gb|EEB76387.1| site-specific recombinase, phage integrase family [Carboxydibrachium pacificum DSM 12653] Length = 373 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 59/370 (15%), Positives = 122/370 (32%), Gaps = 47/370 (12%) Query: 17 RHGKIIYYF----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 + G R +G+R + T A AL K E TL+ Sbjct: 7 KRGSTYSIVVDVGRDENGKRKQKWISGFKTKKEA-EKALAEIIAKIEKNEFIEPSKITLQ 65 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH--- 128 I+E+ K A + +S +S + II G + +K+ I+ S K Sbjct: 66 QFINEWLKIYGEPKWAPKTLVSNKSLIDNYIIPNLGHIELQKLKPVEIQKFYNSLKEKQL 125 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + ++ + + K+AV+ +Y+A NPC VE PK+ + W E +++ + Sbjct: 126 SNTTINYVHRLLNQVLKFAVKWQYIAKNPCELVEAPKKDKKEFVTWNFEHVKKA-KKIFK 184 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF------- 241 + + LY+GLR + C + + +I ++T I Sbjct: 185 DTPIYIHVMIALYTGLRLGEICGLRWEDIDFKNQTITVRRTAQRIDGRFIFKEPKTETSK 244 Query: 242 ---------MKLLAMTPIGKETFFINNDKQKMN----------------ATQFSIWFKAK 276 +++L + + ++ + + F+ Sbjct: 245 GIISIPDFLVQILKQEKNKQLQNKLIFGEKYVTEYEGFISVWEDGRFKEPDYVTKKFRKI 304 Query: 277 ATK-AGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKGADRIRLGI 333 K + + H +R AT+ +G + + Y+ + + Sbjct: 305 LKKQSDIPVIRFHDLRHTHATLMLRSGVDLKIISKRLRHGRISTTADFYSHV--DLEMDR 362 Query: 334 KNSRRISSVV 343 + R++ S + Sbjct: 363 EALRKLESNL 372 >gi|212550679|ref|YP_002308996.1| site-specific recombinase XerD [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212548917|dbj|BAG83585.1| site-specific recombinase XerD [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 299 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 42/262 (16%), Positives = 90/262 (34%), Gaps = 22/262 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVE---SRKHTPSSAIQFLTS 139 +L+ NS ++ S +++++ D + ++ P S + ++ Sbjct: 18 KALSHNSVNAYMSDLEKLLKYLDSIGKDLLNVELSDLQKMFTTLCEMGIHPRSQARIISG 77 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLA 195 ++ + + ++ + NP +E PK + T ++ + G + R Sbjct: 78 IKSFYYFLELEDQITNNPTEYLESPKVGRKLPEFLTVNEINSIIATIDLSKPNGQRNRAI 137 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT------ 248 E L GLR S+ + + +K V + + +K + + Sbjct: 138 IETLYSCGLRISELVKLSFSDFFPDEGFLKINGKGNKQRIVPISNSAIKEIQLYLIDRQR 197 Query: 249 ----PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302 + F+N +++ K +AG+ K S H R AT + GA Sbjct: 198 SSIEKEFENIIFLNRRGTRLSRVMVFYLVKGCTVQAGIKKNVSPHTFRHSFATHLLEGGA 257 Query: 303 TAHELMATYGWKTVDQAETYTK 324 + A G + + E YT Sbjct: 258 NLRAIQAMLGHENITTTEIYTH 279 >gi|239628231|ref|ZP_04671262.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239518377|gb|EEQ58243.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 294 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 41/268 (15%), Positives = 87/268 (32%), Gaps = 24/268 (8%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPS 131 Y + + N+ IS++ +Q+ + ++ +E + Sbjct: 11 YLRDV--RQTSKNTEISYQRDLNQLAAFLAEKGITEVEKVTRTSLNSYILYLEKEGKATT 68 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS- 190 + + L S++ F + R+ + +P ++ PK + + + ++ S Sbjct: 69 TISRELASIKAFFSYLFREGMIRRDPSELLKAPKIEKKAPVILSVNEVNSLLDQPGTSSP 128 Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247 + + E L +G+R S+ + L I I + V + +++ Sbjct: 129 KEIRDKAMMELLYATGIRVSELIGLELSDLNMQIGYITCRDGLKERMVPFGKTASQAMSI 188 Query: 248 T----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSAT 295 F N + M+ F K KAG+ + + H +R A Sbjct: 189 YLERGRRELLKGKESPWLFTNCSGKAMSRQGFWKIIKYYGEKAGIQADITPHTLRHSFAA 248 Query: 296 ISADAGATAHELMATYGWKTVDQAETYT 323 GA H + A G A+ Y Sbjct: 249 HLIRGGADVHAVQAMLGHSDSTTAQMYA 276 >gi|23335402|ref|ZP_00120638.1| COG4974: Site-specific recombinase XerD [Bifidobacterium longum DJO10A] gi|227547607|ref|ZP_03977656.1| integrase/recombinase XerD family protein [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239621212|ref|ZP_04664243.1| tyrosine recombinase xerD [Bifidobacterium longum subsp. infantis CCUG 52486] gi|312132535|ref|YP_003999874.1| integrase/recombinase [Bifidobacterium longum subsp. longum BBMN68] gi|317482508|ref|ZP_07941524.1| tyrosine recombinase XerD [Bifidobacterium sp. 12_1_47BFAA] gi|322689456|ref|YP_004209190.1| recombinase [Bifidobacterium longum subsp. infantis 157F] gi|227211862|gb|EEI79758.1| integrase/recombinase XerD family protein [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239515673|gb|EEQ55540.1| tyrosine recombinase xerD [Bifidobacterium longum subsp. infantis CCUG 52486] gi|291516706|emb|CBK70322.1| tyrosine recombinase XerD subunit [Bifidobacterium longum subsp. longum F8] gi|311773469|gb|ADQ02957.1| probable integrase/recomBinase [Bifidobacterium longum subsp. longum BBMN68] gi|316916060|gb|EFV37466.1| tyrosine recombinase XerD [Bifidobacterium sp. 12_1_47BFAA] gi|320460792|dbj|BAJ71412.1| recombinase [Bifidobacterium longum subsp. infantis 157F] Length = 311 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 46/288 (15%), Positives = 96/288 (33%), Gaps = 32/288 (11%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126 L ++ LA + ++ES + I G + IT + + + + Sbjct: 8 FTRLTEQFLVHIGVERGLATATVTAYESDIAKYIDWLETRGIHEPDAITKQDVEDYIAAL 67 Query: 127 KHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 SA + L S+ ++A+ Q V + +V+ PK + T +++ + Sbjct: 68 DQAGESARSKARRLASIHEFHRFALGQHAVTADVSAAVKAPKGASTLPDVLTVDEVTRLL 127 Query: 184 SFWSEG-------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITV 235 + G + + EF+ +G R S++ A + + + + K V Sbjct: 128 DAAAVGGSTDPVVLRDKALLEFMYATGCRVSEATGANLDDIDLDEHIARLMGKGSKQRLV 187 Query: 236 ELPDGFMKLLAMT---------------PIGKETFFINNDKQKMNATQFSIWFKAKATKA 280 L + + + F+N ++++ KA +A Sbjct: 188 PLGSYACRAITAYLNAGRGELEQRSSAKIPERRALFLNKRGKRISRQSVWEIVKATGERA 247 Query: 281 GV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 G+ H +R AT GA + G +V + YT + Sbjct: 248 GITKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVS 295 >gi|291527676|emb|CBK93262.1| Site-specific recombinase XerD [Eubacterium rectale M104/1] Length = 306 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 38/285 (13%), Positives = 88/285 (30%), Gaps = 28/285 (9%) Query: 69 TTLKWLISEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127 TL+ +I+ Y + + L + ++ Q + + +IT K + + Sbjct: 2 DTLETVINNYLEYCNSQKCLDEKTLKAYRIDLRQFSEQISIINITEITPKILEQYIVRLH 61 Query: 128 --HTPSSAIQFLTSMRVLFKWAVRQEYVAINPC----LSVERPKRKTEGIRPWTKEDMQQ 181 + P + + + S++ LF + ++ + NP + P + I T E Sbjct: 62 EQYKPKTVKRKIASVKALFHYLEYKDILDHNPFNKILIHFRDPVILPKTIPLHTVETFLS 121 Query: 182 FKSFWSEG----------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--T 229 + + E L +G+R S+ C + + +I Sbjct: 122 TIYKQRKNAKTSYQKRNALRDAAVAELLFATGMRISELCSLKINDVNLYDGTILIYGKGD 181 Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM-------NATQFSIWFKAKATKAGV 282 + + +L +T + + + + A + Sbjct: 182 KERRIQIGNEAVINILTEYNDAFDTERQACNNFFINQSGKALSDQSVRRMINKYTSLASI 241 Query: 283 NK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 ++ + H R AT +A + G +++ E YT Sbjct: 242 DQHITPHMFRHTFATSLLEADVDIRYIQEMLGHSSINITEIYTHV 286 >gi|28198608|ref|NP_778922.1| site-specific tyrosine recombinase XerC [Xylella fastidiosa Temecula1] gi|182681291|ref|YP_001829451.1| site-specific tyrosine recombinase XerC [Xylella fastidiosa M23] gi|73920479|sp|Q87DI2|XERC_XYLFT RecName: Full=Tyrosine recombinase xerC gi|254799363|sp|B2IA18|XERC_XYLF2 RecName: Full=Tyrosine recombinase xerC gi|28056692|gb|AAO28571.1| site-specific recombinase [Xylella fastidiosa Temecula1] gi|182631401|gb|ACB92177.1| tyrosine recombinase XerC [Xylella fastidiosa M23] gi|307579742|gb|ADN63711.1| site-specific tyrosine recombinase XerC [Xylella fastidiosa subsp. fastidiosa GB514] Length = 294 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 42/269 (15%), Positives = 92/269 (34%), Gaps = 18/269 (6%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRKHT 129 L+ ++ H ++ ++ ++ +I G + + +++ V + Sbjct: 4 LVEDFFAFLHVERGMSSHTLDAYRRDIGALIAWGGQQAVGEVVALDRAQLQAFVSAEHRR 63 Query: 130 PSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED---MQQFK 183 SA + L++ R + W V++ ++A+NP + PK + R ++ Q Sbjct: 64 GLSAKSLQRRLSACRGFYTWLVKRGHIAVNPAAGLRAPKALRKLPRILDADEAVSFVQIP 123 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFM 242 + G + R E SGLR S+ C L + K V + + Sbjct: 124 TDTPLGLRDRALLELFYSSGLRLSELCGLRWDGLDLDAGLVSVLGKGSRQRVVPVGSYAL 183 Query: 243 KLLAMTPIG-----KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSAT 295 L ++ F ++A + K A + G+ + H +R A+ Sbjct: 184 SALREWCASSGGGAQQPVFPGRYGGPISARAVQVRIKQLAQRQGMAKHVHPHMLRHSFAS 243 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324 ++ + G + + YT Sbjct: 244 HLLESSGDLRGVQELLGHADITTTQIYTH 272 >gi|326799953|ref|YP_004317772.1| Tyrosine recombinase xerC [Sphingobacterium sp. 21] gi|326550717|gb|ADZ79102.1| Tyrosine recombinase xerC [Sphingobacterium sp. 21] Length = 298 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 46/279 (16%), Positives = 95/279 (34%), Gaps = 25/279 (8%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVES- 125 + I ++++ SLA NS ++ +++ + + D I T+ IR +E Sbjct: 3 WESAIKDFKQYLRLERSLAKNSIEAYLHDVEKLRQHALYSHKKDPNAILTQDIRDFLEWI 62 Query: 126 --RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + S + L+ ++ + + + + NP +E P+ + + ++ Sbjct: 63 YSLGMSAHSQARVLSGIKTFYHYLTLEGAMEHNPAALIEAPRLGRKLPDTLSIVEIDALI 122 Query: 184 SFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELP 238 EG + + E L GLR S+ + +L I I+ + + Sbjct: 123 GAIDLSTPEGLRNKAMLEVLYSCGLRVSELVNLKISNLFLEIEFIRVTGKGNKERLIPIG 182 Query: 239 DGFMKLLAMTPIGKETFFINNDKQ-----------KMNATQFSIWFKAKATKAGVNKS-- 285 +K L + ++ + K A K G+ K+ Sbjct: 183 HSAIKHLQIYLQHTRKEGPQKPGMEDYVFLNRRGSPLSRVMVFLIIKELAIKVGLKKTIS 242 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H R AT + GA + G +++ E YT Sbjct: 243 PHTFRHSFATHLIEGGADLRAVQDMLGHESISTTEIYTH 281 >gi|271502380|ref|YP_003335406.1| tyrosine recombinase XerC [Dickeya dadantii Ech586] gi|270345935|gb|ACZ78700.1| tyrosine recombinase XerC [Dickeya dadantii Ech586] Length = 302 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 43/278 (15%), Positives = 88/278 (31%), Gaps = 21/278 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTP 130 + + L+ ++ S+ II G D+ + +R+ V K Sbjct: 11 ADAFLRYLRVERQLSPLTQRSYAHQLQVIIEMLSASGVTDWSSLDAAGVRAVVARSKRDG 70 Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +S Q L+++R W V + + NP V PK + ++M + Sbjct: 71 LNAASLAQRLSALRSFLDWLVGRGELKANPARGVPAPKAGRHLPKNMDVDEMDRLLDIDL 130 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243 + R E + +GLR ++ H+ + K + + + Sbjct: 131 NDPLAVRDRAMLEVMYGAGLRLAELVGLDCGHVNLESGEIWVMGKGSKERKLPVGATAVT 190 Query: 244 LLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 L ++ + +D ++++ F K GV + H +R A Sbjct: 191 WLTHWLAIRDIYAPEDDAVFVSSLGRRISMRNVQKRFAEWGVKQGVNSHVHPHKLRHSFA 250 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 T ++ + G + + YT D L Sbjct: 251 THMLESSGDLRAVQELLGHANLSTTQIYTH-LDFQHLA 287 >gi|237668049|ref|ZP_04528033.1| tyrosine recombinase XerC [Clostridium butyricum E4 str. BoNT E BL5262] gi|237656397|gb|EEP53953.1| tyrosine recombinase XerC [Clostridium butyricum E4 str. BoNT E BL5262] Length = 332 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 38/260 (14%), Positives = 86/260 (33%), Gaps = 13/260 (5%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV--ESRKHTPSSAIQ 135 Y + + + + ++ I+ IR + PS+ Sbjct: 61 YLQVKKLENYSKATLNNYMYTLRNFSNFI-VKPVSNISKNDIRYFMAINYENLKPSTVNN 119 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195 L ++ F+W ++E + NP ++ + T E++++ + + + R Sbjct: 120 KLACIKAFFEWLEQEEIIPKNPARYLQGTRLPKHLRHSLTIEELEKIRLSC-KDVRERAL 178 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKET 254 EFL +G R S+ +A + L + ++ TV D + ++ Sbjct: 179 IEFLFATGCRISEVVKANISDLDLSNNLLRVIGKGDKERTVFFNDKTKLHIKNYIDTRKD 238 Query: 255 FFI------NNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHE 306 +++ + +A + KS H +R AT+ +GA Sbjct: 239 ENEALFIASKFPYKRIGKRGLELIISRIGERADIGKSVYPHLLRHTMATLGLQSGADITT 298 Query: 307 LMATYGWKTVDQAETYTKGA 326 + G T + Y + + Sbjct: 299 IQHLLGHTTPSTTQIYAETS 318 >gi|83943902|ref|ZP_00956359.1| tyrosine recombinase [Sulfitobacter sp. EE-36] gi|83845149|gb|EAP83029.1| tyrosine recombinase [Sulfitobacter sp. EE-36] Length = 315 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 42/290 (14%), Positives = 82/290 (28%), Gaps = 29/290 (10%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSG 122 + + + A N+ +++ + G +IT +R+ Sbjct: 14 RDALQSWLDHQRALKGAAENTITAYQGDLVDFLAFMTLHKGDSQGLGALSQITISDMRAW 73 Query: 123 VESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW----- 174 + + P S + L++++ ++W +E LS PK + RP Sbjct: 74 MAQTRSGDVGPRSMARKLSAVKAFYRWLAEREGFEPTAVLSTRSPKFPKKLPRPLAIDAA 133 Query: 175 --TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 + ++ ++ L GLR S++ K G Sbjct: 134 QAMIDSVEMQSRHAWVAARDVAVLTLLWGCGLRISEALGLKGADAPLPEVLRIIGKGGKE 193 Query: 233 ITVELPDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKAGVNK- 284 V + + F + A S + G+ Sbjct: 194 RVVPVLPAARDAVDAYLRVCPFGKERDAPLFRAMRGGPLAARAISQVMADARMQLGLPAS 253 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 + H +R AT DAG + G ++ + YT D RL Sbjct: 254 ATPHALRHSFATHLLDAGGDLRAIQELLGHASLSTTQAYT-AVDTARLMD 302 >gi|260774849|ref|ZP_05883751.1| tyrosine recombinase XerC [Vibrio coralliilyticus ATCC BAA-450] gi|260609274|gb|EEX35429.1| tyrosine recombinase XerC [Vibrio coralliilyticus ATCC BAA-450] Length = 309 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 40/277 (14%), Positives = 95/277 (34%), Gaps = 23/277 (8%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRS---GVESRKHTP 130 EY +S L+++++ +++ + + + G D+ ++ +R Sbjct: 21 EYLRSE--KGLSLHTQRNYKQQLETMAQHLVTMGLKDWSQVDAAWVRQLASKGMRDGMKA 78 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 SS L+++R F + + + + NP V P++K + +++ Q + Sbjct: 79 SSLATRLSALRSFFDFLILRGELTANPAKGVSAPRKKRPLPKNLDVDEVGQLLEVNEDDP 138 Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLA 246 + R E + +GLR ++ V+ + + I+ V + +A Sbjct: 139 LAIRDRAMMELMYGAGLRLAEMVSVDVRDVSLSSGEIRVVGKGDKERKVPFAGMAEEWVA 198 Query: 247 MT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296 + F++ +++ K V + S H +R AT Sbjct: 199 KWLKVRGALANTDEPALFVSKLGVRISHRNVQKRMAEWGQKQSVASHISPHKLRHSFATH 258 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 ++ + G + + + YT D L Sbjct: 259 MLESSNNLRAVQELLGHENISTTQIYTH-LDFQHLAD 294 >gi|255011626|ref|ZP_05283752.1| putative site-specific recombinase [Bacteroides fragilis 3_1_12] gi|313149461|ref|ZP_07811654.1| integrase [Bacteroides fragilis 3_1_12] gi|313138228|gb|EFR55588.1| integrase [Bacteroides fragilis 3_1_12] Length = 293 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 45/276 (16%), Positives = 99/276 (35%), Gaps = 24/276 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSGV---ES 125 L + + + + + +++ Q+ G+F+ ++ + IR + Sbjct: 2 LADSFLDYLRYERNYSEKTVLAYGEDISQLQEFVQEEIGEFNPLEVKPELIREWIVSLMD 61 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 R +T +S + L+S+R +K+ +RQ V+++P + PK K + +M + Sbjct: 62 RGYTSTSVNRKLSSLRSFYKYLLRQGEVSVDPLRKITGPKNKKPLPSFLKESEMNKLLDD 121 Query: 186 W-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPD 239 +G + RL E +G+R S+ + + + T K + D Sbjct: 122 TDFGEGFKGCRDRLIIEVFYATGMRLSELIGLDDKDVDFSASLLKVTGKRNKQRLIPFGD 181 Query: 240 GFMKLLAMTPIGKET--------FFINNDKQKMNATQFSIWFKAKATKA--GVNKSAHGV 289 + + + FF+ + +++ K +K +S H + Sbjct: 182 ELKEAMFEYVDVRNKVISVKSDAFFVRENGERLYKNLVYNLVKRNLSKVVTLKKRSPHVL 241 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 R AT + A + G ++ E YT Sbjct: 242 RHTFATTMLNNDAELGAVKELLGHSSLATTEIYTHT 277 >gi|34222761|sp|O31087|XERC_SERMA RecName: Full=Tyrosine recombinase xerC gi|2625019|gb|AAC46276.1| site specific recombinase [Serratia marcescens] Length = 303 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 43/285 (15%), Positives = 91/285 (31%), Gaps = 21/285 (7%) Query: 68 PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGV 123 +L+ + + + L+ +++S+ ++ ++ G D+ + +R Sbjct: 5 APSLQQPVDAFLRYLKVERQLSPLTQLSYSRQLTALMRLAQEIGVTDWTTLDAARVRMLA 64 Query: 124 ESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 K +S L+S+R W V Q + NP + P+ + ++M Sbjct: 65 ARSKRAGLQSASLALRLSSLRSFLDWLVSQGVLHANPAKGIRTPRSGRHLPKNIDVDEMN 124 Query: 181 QFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVE 236 Q + R E + +GLR S+ +H+ K + Sbjct: 125 QLLEIDLNDPLAVRDRAMLEVMYGAGLRLSELVGLDCRHVDMAAGEVWVMGKGSKERKLP 184 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQ-------KMNATQFSIWFKAKATKAGV--NKSAH 287 + + L ++ F +D +++ F K GV + H Sbjct: 185 IGRTAVTWLEHWLAMRDLFGPQDDAMFLSNQGRRISTRNVQKRFAEWGVKQGVNSHIHPH 244 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 +R AT ++ + G + + YT D L Sbjct: 245 KLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTH-LDFQHLA 288 >gi|257063600|ref|YP_003143272.1| tyrosine recombinase XerD [Slackia heliotrinireducens DSM 20476] gi|256791253|gb|ACV21923.1| tyrosine recombinase XerD [Slackia heliotrinireducens DSM 20476] Length = 309 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 37/290 (12%), Positives = 82/290 (28%), Gaps = 25/290 (8%) Query: 76 SEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGVESRKHTP- 130 ++Y + + S+ + + I G+ IT + + + Sbjct: 16 NDYLAYLSVERGSSSLTVGSYATDLNDYISFLGERGVPDSAAITRDDVVAYEYDLRRRGY 75 Query: 131 --SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187 SS + L++++ ++ V + NP V PK + ++ + Sbjct: 76 ADSSIERHLSALKGFHRFLVGEGVTKGNPADLVSLPKVPDRLPDVLSVSEVNELLDQPFK 135 Query: 188 ---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243 G + + A E L GLR S+ + + ++ V + + Sbjct: 136 DGPLGLRDQAALELLYGCGLRASELISLDLGDVFFAEGILRVMGKGSRERIVPIGGSAQR 195 Query: 244 LLAMTPIGKETFFINNDKQ-----------KMNATQFSIWFKAKATKAG-VNKSAHGVRK 291 +L K +++ + G + H +R Sbjct: 196 VLLDYLENGRPKLAKPSKTDGAVILNARGGRLSRQALHTIVRTAGATIGRPDLHPHTLRH 255 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 AT + GA + G + + Y DR + + Sbjct: 256 SFATHMLEGGADLRTIQEILGHSDISTTQIYVH-VDRSHIREEYLAAHPR 304 >gi|227813261|ref|YP_002813270.1| tyrosine recombinase XerC [Bacillus anthracis str. CDC 684] gi|227007518|gb|ACP17261.1| tyrosine recombinase XerC [Bacillus anthracis str. CDC 684] Length = 299 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 43/287 (14%), Positives = 96/287 (33%), Gaps = 27/287 (9%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126 +K L+ + + + + S+++ + ++ G + IT +R + + Sbjct: 3 VKKLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFMEREGISSFLDITYADVRLYLTTL 62 Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 S + ++S+R L+++ +R+ Y NP PK++ + E++++ Sbjct: 63 HDEKLARKSVARKVSSLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELF 122 Query: 184 SF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238 G + + E + +G+R S+ + + + +I K + Sbjct: 123 EASDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFG 182 Query: 239 DGFMKLLAMTPI------------GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284 L F+N + + KA + Sbjct: 183 SYAQDALITYIENGRKQLAEKTEEQSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRI 242 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 S H +R AT D GA + G + + + YT + RL Sbjct: 243 SPHILRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTH-VSKERL 288 >gi|296117987|ref|ZP_06836570.1| tyrosine recombinase XerD [Corynebacterium ammoniagenes DSM 20306] gi|295969218|gb|EFG82460.1| tyrosine recombinase XerD [Corynebacterium ammoniagenes DSM 20306] Length = 322 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 42/313 (13%), Positives = 95/313 (30%), Gaps = 35/313 (11%) Query: 50 ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD 108 A ++ + P + ++ + + N+ ++ + + Sbjct: 3 AEAKASKSKIDHAEPAPELVSVAQ---GWLDHLAVEKGASKNTVSNYRRDLKRYVSWLTT 59 Query: 109 FD---YRKITTKHIRSGVESRKHTP--------SSAIQFLTSMRVLFKWAVRQEYVAINP 157 + ++++ H+ S V + +S + L R L K+A+ + + ++ Sbjct: 60 ANISTLSEVSSHHVESYVADLRRGWDGQKPLSSASTSRALIVARGLHKFALSEGLIDVDV 119 Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-------QPRLAFEFLLYSGLRCSDSC 210 V P + +++ + G + + E L +G R S+ Sbjct: 120 AAEVAPPSPGKHLPDSLSIDEVTRLIDSVPAGEVATAVDIRDKALLEMLYGTGARVSELL 179 Query: 211 RAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ------- 262 V + ++ T K V L + + Sbjct: 180 DLAVDDVADSPEILTVTGKGSKQRLVPLGSHARTAIEEYLVRARPQLSRGKSHALFLNTL 239 Query: 263 --KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 ++ + +AG++K S H +R AT GA + G +V Sbjct: 240 GKPLSRQSAWAVIQQAVQRAGLDKKVSPHTLRHSFATHLLQGGADVRTVQELLGHSSVTT 299 Query: 319 AETYTKG-ADRIR 330 + YT AD +R Sbjct: 300 TQIYTHVTADSLR 312 >gi|94266129|ref|ZP_01289843.1| Phage integrase [delta proteobacterium MLMS-1] gi|93453304|gb|EAT03747.1| Phage integrase [delta proteobacterium MLMS-1] Length = 465 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 58/346 (16%), Positives = 124/346 (35%), Gaps = 22/346 (6%) Query: 7 LPPFVTKERTRHGKIIY-YFRKGHGR--RIRLPYPHESTFIPAYMSALTGST-----PKR 58 L F+ + R+ GK + +R GHG+ + ++ + +F A +A + Sbjct: 116 LTGFILEVRSTGGKTYHLRYRDGHGKLRQHKIGGADDISFDKAQAAATRLRSRVVLGEDP 175 Query: 59 EYINSPRKKPTTLKW-LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117 +K+ TL+ +Y + + + F + ++ G+ +I Sbjct: 176 LAERQTKKQVPTLEEFAAEKYM--PYVKGYKRSWKSDFGYLKNHLLPLFGNQHLDQIKQA 233 Query: 118 HIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIR 172 + K ++ + + +R +F A + + NP V + R Sbjct: 234 EVIELHHGMKARGYALATCNRQVILLRYIFNLARKWKIPGADNNPTTGVALFEANNGRER 293 Query: 173 PWTKEDMQQFKSF--WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--K 228 T+++ + K+ SE +Q + LL G R S+ + + S + K Sbjct: 294 YLTEDEAARLKAALESSENTQLKYIVSLLLLLGCRKSELLNSRWEDFDLARRSWRIPLSK 353 Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAH 287 +G V L +++LA P N + + F + KAG+ H Sbjct: 354 SGKARYVPLSTAALEVLASIPRLSPYVVPNPKTLQPFVSVFRS-WDTARKKAGLPDVRMH 412 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 +R A+ ++G + +E+ G + + Y+ ++ L Sbjct: 413 DLRHSFASFLVNSGRSIYEVSQLLGHSQLKTTQRYSHLSNDTLLAA 458 >gi|328541970|ref|YP_004302079.1| Tyrosine recombinase XerD [Polymorphum gilvum SL003B-26A1] gi|326411720|gb|ADZ68783.1| Tyrosine recombinase XerD [Polymorphum gilvum SL003B-26A1] Length = 308 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 45/299 (15%), Positives = 91/299 (30%), Gaps = 33/299 (11%) Query: 76 SEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---S 131 + + A N+ S+ D G R T + + + + S Sbjct: 9 ESFLEMLAAERGAAHNTLDSYRRDLDDFAAFLGTTATRDATAEDVSAYLSDLAARGFAAS 68 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-- 189 S + L+++R FK+ + +P ++ PK++ R ++ ++ + Sbjct: 69 SQARRLSALRQYFKFLYAEGERGDDPTRTLASPKKRQGLPRILSEAEVDRLIEAACFDAT 128 Query: 190 ------------SQPRLAFEFLLYSGLRCSDSCR-AGVQHLQNNIFSIKTQKTGTIITVE 236 + E L +GLR S+ L++ K G V Sbjct: 129 LEHETPGRALRAQRLYTLLEVLYATGLRVSELVALPVGAALRDARLIGIRGKGGKERLVP 188 Query: 237 LPDGFMKLLAMTPIG----------KETFFINNDKQKMNATQFSIWFKAKATKAGVN--- 283 L + + F + + F+ K A G++ Sbjct: 189 LSPRAQEAMRAYVARRNAEGAYKGSPWLFPSHGESGHFTRQAFARDLKDLARAVGLDAAK 248 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSRRISS 341 S H +R A+ GA + G + + YT D R+R ++ ++ Sbjct: 249 VSPHVLRHAFASHLLQNGADLRVVQQLLGHADISTTQIYTHVLDERLRQLVEAHHPLAK 307 >gi|260892612|ref|YP_003238709.1| integrase family protein [Ammonifex degensii KC4] gi|260864753|gb|ACX51859.1| integrase family protein [Ammonifex degensii KC4] Length = 285 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 46/280 (16%), Positives = 99/280 (35%), Gaps = 14/280 (5%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRK 127 L+ ++ +R+S L+ + + + + G D ++T + R ++ + Sbjct: 3 LEEVLKAFRQSCLSRGLSPGTAEVYLGHVRRFFGWLGCADITEVTPFDVASYRRHLQEKG 62 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 P++ L ++ F WA V+ +P V + R K ++ +F Sbjct: 63 RKPATVNNALNALSSFFSWAKEAGLVSSDPTEGVRQVPEDRPAPRWLGKRELGRFLRAVQ 122 Query: 188 EG--SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI---FSIKTQKTGTIITVELPDGFM 242 + + R LL++GLR S++ ++ + F K G V L Sbjct: 123 KHGSPRDRALVALLLHAGLRVSEAVSLRLEDVVIRERSGFVRVRGKGGKYREVPLNVTVR 182 Query: 243 KLLAMT-----PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATIS 297 ++L P F + + F + +GV + H +R Sbjct: 183 RVLKEYLAELPPQEGGWLFPGKGGEYLTRFAVEKLFARLSRLSGVEVTPHRLRHTFCKWL 242 Query: 298 ADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNS 336 DAG + ++ G ++ YT+ G + + ++ Sbjct: 243 IDAGESLDKVALLAGHSNLNTTARYTRPGVEDLERAVEKL 282 >gi|189439098|ref|YP_001954179.1| Integrase [Bifidobacterium longum DJO10A] gi|189427533|gb|ACD97681.1| Integrase [Bifidobacterium longum DJO10A] Length = 308 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 46/288 (15%), Positives = 96/288 (33%), Gaps = 32/288 (11%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126 L ++ LA + ++ES + I G + IT + + + + Sbjct: 5 FTRLTEQFLVHIGVERGLATATVTAYESDIAKYIDWLETRGIHEPDAITKQDVEDYIAAL 64 Query: 127 KHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 SA + L S+ ++A+ Q V + +V+ PK + T +++ + Sbjct: 65 DQAGESARSKARRLASIHEFHRFALGQHAVTADVSAAVKAPKGASTLPDVLTVDEVTRLL 124 Query: 184 SFWSEG-------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITV 235 + G + + EF+ +G R S++ A + + + + K V Sbjct: 125 DAAAVGGSTDPVVLRDKALLEFMYATGCRVSEATGANLDDIDLDEHIARLMGKGSKQRLV 184 Query: 236 ELPDGFMKLLAMT---------------PIGKETFFINNDKQKMNATQFSIWFKAKATKA 280 L + + + F+N ++++ KA +A Sbjct: 185 PLGSYACRAITAYLNAGRGELEQRSSAKIPERRALFLNKRGKRISRQSVWEIVKATGERA 244 Query: 281 GV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 G+ H +R AT GA + G +V + YT + Sbjct: 245 GITKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVS 292 >gi|297242743|ref|ZP_06926681.1| site-specific recombinase XerD [Gardnerella vaginalis AMD] gi|296888954|gb|EFH27688.1| site-specific recombinase XerD [Gardnerella vaginalis AMD] Length = 322 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 54/287 (18%), Positives = 99/287 (34%), Gaps = 34/287 (11%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGV--ESRK 127 LI +Y L ++ ++ S Q + G + ++TT +RS + ESR Sbjct: 21 LIDDYIDYVRANKGLGERTQKAYASDILQCLAWCNRHGFNNISELTTDDLRSWMADESRS 80 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ------- 180 H SS + + ++R F W EY++ NP + PK K + + Sbjct: 81 HARSSLARKVVAVRGFFAWCQHVEYISSNPAEILMTPKIKNMLPSVLDEYQAESLMNNVD 140 Query: 181 --------QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGT 231 K+ + G + E L +G+R + +Q + + T K Sbjct: 141 SKANVSSSCTKNQKAVGLRNAAILELLYATGIRVGELTSLNIQDINFSSHTIKVTGKGNK 200 Query: 232 IITVELPDGFMKLLAMTPIGKETF-----------FINNDKQKMNATQFSIWFKAKATKA 280 V K L+ F+ ++++ +A A Sbjct: 201 QRVVPFGVPAYKALSAWISKDGREILLRNSVEEAAFLGTRGKRIDQRLVRRIVHDEAKSA 260 Query: 281 GVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 V S H +R +AT + GA E+ G +++ + YT + Sbjct: 261 HVPDISPHALRHSAATHMLNGGADLREVQELLGHSSLNTTQRYTHVS 307 >gi|225849231|ref|YP_002729395.1| recombinase [Sulfurihydrogenibium azorense Az-Fu1] gi|225644770|gb|ACN99820.1| recombinase [Sulfurihydrogenibium azorense Az-Fu1] Length = 297 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 44/299 (14%), Positives = 99/299 (33%), Gaps = 30/299 (10%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRK 127 L + + N+ ++ +Q I+ GD + ++ I R ++S+K Sbjct: 3 LSECCELFLSYIA--DKSPNTIKNYSVDLNQFIKIVGDKEVELVSKSDIAKFRMVLQSQK 60 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S+ + L ++ L+++ + E V ++P RPK + E+++ Sbjct: 61 KKSSTIARKLATLNSLYQYLIDLELVKVSPITKSHRPKISQRIPSSLSNEEIKTLL-KNI 119 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------------ 229 + Q + LL +GLR S+ ++ + Sbjct: 120 DNLQDKAIVVLLLTTGLRSSELLNIKKSNILIERQNQTFSVDKVIEEGLKEDDIAYIRVV 179 Query: 230 ---GTIITVELPDGFMKLLAMT-PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285 V + +++L ++ K K + Sbjct: 180 GKGDKEREVPITGKPLQILVEYLKEVNHYIDSKTPIFPISYHTLWRKIKDIGKKIATSLH 239 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 H +R +AT++ +GA + G + Y K + +L +K ++ +S +D Sbjct: 240 PHKLRHTAATVALASGAELRVIQELLGHASPITTARYAK-VGQKQL-LKATKALSENID 296 >gi|322691424|ref|YP_004220994.1| recombinase [Bifidobacterium longum subsp. longum JCM 1217] gi|320456280|dbj|BAJ66902.1| recombinase [Bifidobacterium longum subsp. longum JCM 1217] Length = 311 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 46/288 (15%), Positives = 96/288 (33%), Gaps = 32/288 (11%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126 L ++ LA + ++ES + I G + IT + + + + Sbjct: 8 FTRLTEQFLVHIGVERGLATATVTAYESDIAKYIDWLETRGIHEPDAITKQDVEDYIAAL 67 Query: 127 KHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 SA + L S+ ++A+ Q V + +V+ PK + T +++ + Sbjct: 68 DQAGESARSKARRLASIHEFHRFALGQHAVTADVSAAVKAPKGASTLPDVLTVDEVTRLL 127 Query: 184 SFWSEG-------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITV 235 + G + + EF+ +G R S++ A + + + + K V Sbjct: 128 DAAAAGGSTDPVVLRDKALLEFMYATGCRVSEATGANLDDIDLDEHIARLMGKGSKQRLV 187 Query: 236 ELPDGFMKLLAMT---------------PIGKETFFINNDKQKMNATQFSIWFKAKATKA 280 L + + + F+N ++++ KA +A Sbjct: 188 PLGSYACRAITAYLNAGRGELEQRSSAKIPERRALFLNKRGKRISRQSVWEIVKATGERA 247 Query: 281 GV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 G+ H +R AT GA + G +V + YT + Sbjct: 248 GITKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVS 295 >gi|290513161|ref|ZP_06552523.1| tyrosine recombinase XerC [Klebsiella sp. 1_1_55] gi|289774372|gb|EFD82378.1| tyrosine recombinase XerC [Klebsiella sp. 1_1_55] Length = 300 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 43/280 (15%), Positives = 94/280 (33%), Gaps = 21/280 (7%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSG---VES 125 + + + L+ + +++ D + ++G +++ +RS Sbjct: 8 ACVDRFLRYLGVERQLSPITLTNYQRQLDALIVLADEAGLKSWQQCDAAQVRSFAVRSRR 67 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 P+S L+++R F W V Q +A NP + PK + +D+ + Sbjct: 68 AGLGPASLALRLSALRSFFDWMVSQGELAANPAKGIAAPKIPRHLPKNIDVDDVNRLLDI 127 Query: 186 WSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGF 241 + R E + +GLR S+ ++HL + K + + Sbjct: 128 DLNDPLAVRDRAMLEVMYGAGLRLSELVNLDIKHLDLESGEVWVMGKGSKERRLPIGRNA 187 Query: 242 MKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKF 292 + + + F ++D ++++A F K G+ + H +R Sbjct: 188 VAWIEHWLDLRGLFGTDDDALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHS 247 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 AT ++ + G + + YT D L Sbjct: 248 FATHMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 286 >gi|186475291|ref|YP_001856761.1| site-specific tyrosine recombinase XerD [Burkholderia phymatum STM815] gi|184191750|gb|ACC69715.1| tyrosine recombinase XerD [Burkholderia phymatum STM815] Length = 315 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 43/290 (14%), Positives = 82/290 (28%), Gaps = 26/290 (8%) Query: 70 TLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH----IRSGVE 124 ++ + + LA N+ ++ + + Sbjct: 26 SIDAFCDALWLEH----GLARNTLDAYRRDLRLFSEWLAERRDASLDAASEADLTAYSAA 81 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 +SA + L+ R + WAVR+ + +P L + K+ T+ ++ Sbjct: 82 RSADKSTSANRRLSVFRRYYAWAVREHRASADPTLRIRSAKQPPRFPSTLTEAQVEALLG 141 Query: 185 FW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPD 239 G + R E + SGLR S+ + N ++ + + Sbjct: 142 APDVTTPLGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGSKERLIPFGE 201 Query: 240 GFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287 + F+ + M QF K A A V S H Sbjct: 202 EAHAWIERYLRESRPALLGQRSADALFVTARAEGMTRQQFWNIIKRHALTAHVHAPLSPH 261 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 +R AT + GA + G + + YT A + + Sbjct: 262 TLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVARERLKSLHAAH 311 >gi|291484165|dbj|BAI85240.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp. natto BEST195] Length = 304 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 35/283 (12%), Positives = 91/283 (32%), Gaps = 27/283 (9%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVE 124 L EY + + + + +++ ++ G + T+ + Sbjct: 7 FVKLFVEYLQIE--KNNSQYTIVNYVDSIEEFETFLRVQGINGFEEAAYQDTRIFLTEAY 64 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQ 180 + + + + ++++R +K+ +R++ + NP V PK++ + +++ + Sbjct: 65 EKGLSRRTISKKISALRSFYKFLMREKLIEENPFQLVHLPKQEKRIPKFLYQKELEELFE 124 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD 239 G + + E L +G+R S+ C + + + ++ K + Sbjct: 125 VSDISQPAGMRDQALLELLYATGMRVSECCSITINDVDLFMDTVLVHGKGKKQRYIPFGS 184 Query: 240 GFMKLLAMTPIGKETFFINNDKQKM------------NATQFSIWFKAKATKAG--VNKS 285 + L + + K+ A KA ++ Sbjct: 185 YAREALKVYMNSGRQCLLMKAKEPHDLLFVNQRGGPLTARGIRHILSGLVQKASSTLHIH 244 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 H +R AT + GA + G + + YT + Sbjct: 245 PHMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQIYTHVSKE 287 >gi|296330829|ref|ZP_06873304.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674347|ref|YP_003866019.1| site-specific tyrosine recombinase for chromosome partitioning [Bacillus subtilis subsp. spizizenii str. W23] gi|296151834|gb|EFG92708.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412591|gb|ADM37710.1| site-specific tyrosine recombinase for chromosome partitioning [Bacillus subtilis subsp. spizizenii str. W23] Length = 304 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 35/283 (12%), Positives = 87/283 (30%), Gaps = 27/283 (9%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV------E 124 L EY + + + + +++ ++ + Sbjct: 7 FVKLFVEYLQIE--KNYSQYTIVNYVDSIEEFETFLRVQGINGFEKAVYQDTRIFLTEAY 64 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQ 180 + + + + ++++R +K+ +R++ V NP V PK++ + +++ + Sbjct: 65 EKGLSRRTISKKISALRSFYKFLMREKLVEENPFQLVHLPKQEKRIPKFLYQKELEELFE 124 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD 239 G + + E L +G+R S+ C V + + ++ K + Sbjct: 125 VSDISQPTGMRDQALLELLYATGMRVSECCSITVNDVDLFMDTVLVHGKGKKQRYIPFGS 184 Query: 240 GFMKLLAMTPIGKETFFINNDKQKM------------NATQFSIWFKAKATKAG--VNKS 285 + L + + K+ A KA ++ Sbjct: 185 YAREALKVYMNSGRQCLLMKAKEPHDLLFVNQRGGPLTARGIRHILSGLVQKASGTLHIH 244 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 H +R AT + GA + G + + YT + Sbjct: 245 PHMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQIYTHVSKE 287 >gi|300690586|ref|YP_003751581.1| site-specific tyrosine recombinase [Ralstonia solanacearum PSI07] gi|299077646|emb|CBJ50282.1| site-specific tyrosine recombinase [Ralstonia solanacearum PSI07] Length = 308 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 48/301 (15%), Positives = 93/301 (30%), Gaps = 28/301 (9%) Query: 54 STPKREYINSPRKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FD 110 + E + R T++ + + LA N+ ++ + + Sbjct: 2 TKAAPEVLAPARLSAETIQRFCDALWLED----GLARNTLDAYRRDLTLYAQWLAERGKA 57 Query: 111 YRKITTKHIRSGVESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168 + + +R SSA + T + F+WA+R+ ++ +P + K+ Sbjct: 58 IDQTEDGDLADYFAARHAESRASSANRRRTVFKRFFQWALREHVISADPSRLLSTAKQPP 117 Query: 169 EGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 + ++ ++ + + + R E + SGLR S+ + N + Sbjct: 118 RIPKTLSEAQVEALIAAPDIDTPLGLRDRAMIELMYASGLRVSEIVALKTVEVGLNEGVV 177 Query: 225 KTQKTG--TIITVELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIW 272 + V L T F+ M F Sbjct: 178 RVVSGKGGKDRLVPFGAEAGDWLRRYLRDGRTALLGERTADALFVTARGDGMTRQAFWHL 237 Query: 273 FKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 K A +A + S H +R AT + GA + G + + YT A R R Sbjct: 238 IKRYALRADLHAPLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVA-RER 296 Query: 331 L 331 L Sbjct: 297 L 297 >gi|71905836|ref|YP_283423.1| tyrosine recombinase XerC subunit [Dechloromonas aromatica RCB] gi|71845457|gb|AAZ44953.1| tyrosine recombinase XerC subunit [Dechloromonas aromatica RCB] Length = 295 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 38/281 (13%), Positives = 83/281 (29%), Gaps = 23/281 (8%) Query: 74 LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP-- 130 + + L+ ++ ++ +++ +GD + H+R V Sbjct: 3 AVDTWLAELSDQRRLSAHTVSNYRRDLQKLLAAAGDIPLASLQVHHLRRFVAQLHGQGLA 62 Query: 131 -SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 S + L++ R F W + V NPC + PK + + ++ + + Sbjct: 63 GRSLARALSAWRGFFHWLGERGMVKANPCDGIRPPKSPRMLPKALSVDETSRLLMPVDDD 122 Query: 190 S-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 + FE SGLR ++ + L + + + G + L K Sbjct: 123 DPVQAARDLAMFELFYSSGLRLAELVALDCEALDDIAHESEVRVLGKRNKLRLVPVGSKA 182 Query: 245 LAMTPIGKETF-----------FINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRK 291 F+ +++ +A G+ H +R Sbjct: 183 REALAAWAAVRNELAKPEEKALFVGQRGGRISPRMVEARLARRAVLLGLPTHVHPHMLRH 242 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 A+ + + G ++ + YT D L Sbjct: 243 SFASHVLQSSGDLRAVQEMLGHASIASTQVYTH-LDFQHLA 282 >gi|258544388|ref|ZP_05704622.1| tyrosine recombinase XerD [Cardiobacterium hominis ATCC 15826] gi|258520347|gb|EEV89206.1| tyrosine recombinase XerD [Cardiobacterium hominis ATCC 15826] Length = 289 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 45/296 (15%), Positives = 95/296 (32%), Gaps = 31/296 (10%) Query: 74 LISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHT 129 +I + ++ LA S S+ ++ + + +++ + + Sbjct: 2 VIERFCEAMWLEAGLAEASVASYRRDL-RLAERLCAKPLSDFSAADVQAVLAQLLDLQRK 60 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--- 186 SS + S+R F W V + A +P + +E + + R ++ ++++ + Sbjct: 61 ASSLARMRVSLRRFFAWMVEERLRADDPTVLLEAVRHEKPLPRSLSEAEVERLLAAPDLA 120 Query: 187 -SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 G + E L GLR S+ + + ++ + G + + + Sbjct: 121 TPAGLRDAAMLELLYACGLRVSELVGLPLSAVFLQEAVLRVRGKGDKVRLVPMGEQAAEM 180 Query: 246 AMTPIGKETF-----------FINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKF 292 + FI MN F A G+ S H +R Sbjct: 181 VERYCREARPLLLEGRVSDVLFIAARGGAMNRRTFWKLIHDYAIAVGIRTAVSPHTLRHA 240 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 AT + GA + G + + YT A+ R++ V + P Sbjct: 241 FATHLVNHGADLRVVQMLLGHSNLSTTQIYTHVAE---------ARLAKVFAAHHP 287 >gi|58616838|ref|YP_196037.1| tyrosine recombinase xerD [Ehrlichia ruminantium str. Gardel] gi|58416450|emb|CAI27563.1| Tyrosine recombinase xerD [Ehrlichia ruminantium str. Gardel] Length = 312 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 37/292 (12%), Positives = 102/292 (34%), Gaps = 34/292 (11%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSG---VES 125 + ++E+ + ++ N+ S+ S + + + +++ ++ + Sbjct: 5 EKYVNEFLTAIAAEKHISYNTYQSYMSDLLDLCKFFDCKNLPLIEVSRDDLKDYVRLMHK 64 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW-----TKEDMQ 180 R++ S+ + +++++ L+K+ + +A +P LS++ P+ + ++ Sbjct: 65 REYKSSTISRKISAIKNLYKFFCKDNIIAYDPALSLDFPRLSRALPKALNIEEVSRLLDT 124 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 +G + L SG+R S+ + ++ + + + + I + Sbjct: 125 AALDSSPDGLRTNAIINILYSSGIRVSELIYLKLNSIKEALNNDNIEISYITIRGKANRE 184 Query: 241 FMKLLAM--------------------TPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280 + LL I + F + + K + A Sbjct: 185 RIVLLNSSAIVSIQKYLEVYMHFVPNGYEISQWLFPGTKFDNPITRQRIGQLLKDLSISA 244 Query: 281 GVNKS---AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 GV+ + H +R AT + G+ + G ++ + YT A+ Sbjct: 245 GVDMTRISPHKLRHSFATHLLNNGSDIIFIQKMLGHTSLSTTQIYTYVANEK 296 >gi|146313613|ref|YP_001178687.1| site-specific tyrosine recombinase XerC [Enterobacter sp. 638] gi|145320489|gb|ABP62636.1| tyrosine recombinase XerC subunit [Enterobacter sp. 638] Length = 300 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 42/282 (14%), Positives = 94/282 (33%), Gaps = 21/282 (7%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRS---GV 123 L ++ + + L+ + ++++ D Q+ + G + +R+ Sbjct: 6 LSSFVARFLRYLGIERQLSPITLLNYQRQLDAIMQLAEEIGLKSWPLCDAATVRALVVRS 65 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + P+S L+++R F W V Q + NP + PK + +D+ + Sbjct: 66 RRKGLGPASLALRLSALRSFFDWLVSQGELNANPAKGISTPKAPRHLPKNIDVDDVNRLL 125 Query: 184 SFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD 239 + + R E + +GLR S+ ++HL + K + + Sbjct: 126 NIDLNDPLAVRDRAMLEVMYGAGLRLSELVNLDLKHLDLDTGEVWVMGKGSKERRLPIGR 185 Query: 240 GFMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVR 290 + + + F + ++++A F K G+ + H +R Sbjct: 186 NAVAWIEHWLDLRGLFGAEENALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLR 245 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 AT ++ + G + + YT D L Sbjct: 246 HSFATHMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 286 >gi|74318546|ref|YP_316286.1| tyrosine recombinase XerC [Thiobacillus denitrificans ATCC 25259] gi|74058041|gb|AAZ98481.1| tyrosine recombinase XerC [Thiobacillus denitrificans ATCC 25259] Length = 294 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 41/275 (14%), Positives = 84/275 (30%), Gaps = 21/275 (7%) Query: 78 YRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSA 133 Y + L+ ++ ++ + + R + +T+ IR + + +S Sbjct: 7 YLQHLAAERRLSAHTLSAYARDLENLARLTDGKPLDTLTSHDIRGAIVKLRAGGLAAASV 66 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-----E 188 + L+S R + +A R+ NPC + PK + + + Sbjct: 67 ARQLSSWRGFYAFACRRLGYPDNPCAGLRPPKASRALPDILSPDACARLLDAPDGDEDLL 126 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRA---------GVQHLQNNIFSIKTQKTGTIITVELPD 239 ++ R FE SGLR S+ G + + G + Sbjct: 127 ATRDRAMFELFYSSGLRLSELVGIDLPDLDLASGEARVTGKGKKTRLVPVGRQAVAAITA 186 Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297 L + E F+ ++ + A +G+ + H +R AT Sbjct: 187 WLPLRLTLVRTPTEALFVGQRGARLTPRNVQLRLARWARASGLGQHVHPHMLRHAFATHV 246 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 + + G ++ + YT D L Sbjct: 247 LQSSGDLRAVQEMLGHASISTTQVYTH-LDWQHLA 280 >gi|170729959|ref|YP_001775392.1| site-specific tyrosine recombinase XerD [Xylella fastidiosa M12] gi|167964752|gb|ACA11762.1| integrase/recombinase [Xylella fastidiosa M12] Length = 324 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 53/294 (18%), Positives = 96/294 (32%), Gaps = 35/294 (11%) Query: 66 KKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSG 122 K TT+ + + K L+ ++ S+ + + R + +T + Sbjct: 22 KDATTIAHCLDALWIKH----GLSRHTLNSYRRDLEGLARWNNGRAGPLATLTPPALLDY 77 Query: 123 VESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + R ++P S + L+ +R F +AV + NP + P + T+ + Sbjct: 78 LTWRTQQHYSPLSNARLLSVLRTFFSYAVECGWRNDNPSTLLAHPVLPHPLPKALTESQI 137 Query: 180 QQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIIT 234 + + EG + R E + +GLR S+ V L ++ G Sbjct: 138 EALLAAPSIETPEGLRNRAMLELMYAAGLRVSELITLPVAMLNRRQGVLRITGKGGKERL 197 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKM-----------------NATQFSIWFKAKA 277 V L + L + + QF W K A Sbjct: 198 VPLGEESQHWLQRYLEQARPSLAADKPIPADSDGDVPLFINTNLKRLSRQQFWRWIKHYA 257 Query: 278 TKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 AG+ S H +R AT + GA L G +++ + YT A + Sbjct: 258 ALAGIAPNKVSPHVLRHSFATHLLNHGADLRALQMLLGHRSISTTQIYTLIARQ 311 >gi|153805793|ref|ZP_01958461.1| hypothetical protein BACCAC_00029 [Bacteroides caccae ATCC 43185] gi|149130470|gb|EDM21676.1| hypothetical protein BACCAC_00029 [Bacteroides caccae ATCC 43185] Length = 316 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 50/297 (16%), Positives = 103/297 (34%), Gaps = 25/297 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKH-- 128 +I +Y++ SL+ N+ ++ + D+++ + ++ ++ Sbjct: 16 IIRKYQQYLKLEKSLSPNTLEAYLTDLDKLMSFLTLEGINVLEVCLSDLQRFTAGLHDIG 75 Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 P S + L+ ++ F++ + +Y+ +P +E PK + T E++ + S Sbjct: 76 IHPRSQARILSGIKSFFRFLLMADYLEADPSELLEGPKIGFKLPEVLTVEEIDRIISAVD 135 Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFM 242 EG + R E L GLR S+ + L + F K V + + Sbjct: 136 RSKAEGQRNRAILETLYSCGLRVSELVNLKLSDLYFDEGFIKVEGKGSKQRLVPISPRAI 195 Query: 243 KLLAMTPIGKETFFINNDKQKM-----------NATQFSIWFKAKATKAGV--NKSAHGV 289 + + + + + + + K A AG+ N S H Sbjct: 196 NEIKLYFTDRNRIEVKKEYEDFVFVSQRRGKGLSRIMIFHMIKELAQTAGIIKNISPHTF 255 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346 R AT + GA + G +++ E YT DR L + + Sbjct: 256 RHSFATHLLEGGANLRAIQCMLGHESIATTEIYTH-IDRNMLRSEIIEHHPRNIKYR 311 >gi|149184272|ref|ZP_01862590.1| integrase [Erythrobacter sp. SD-21] gi|148831592|gb|EDL50025.1| integrase [Erythrobacter sp. SD-21] Length = 292 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 42/291 (14%), Positives = 93/291 (31%), Gaps = 27/291 (9%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132 I ++ A N+ +++ +Q G+ T + + P++ Sbjct: 4 IDDFLAMLAAERGAARNTLLAYGRDLNQAEELLGEK-LAGATPAQLAKLGQGWSSLAPAT 62 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF------- 185 + ++++R F + V + +P ++ RP + + + ++ Sbjct: 63 LARKISALRQFFGFLVDEGEREDDPTYALPRPATRRPLPKILSHAQVEALFGRAEDEAAS 122 Query: 186 -WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMK 243 + + E L SGLR S+ + + + T K G V + + Sbjct: 123 DRPQAVRLLAMLELLYGSGLRASELVSLPLSAVPRDEPFLTVTGKGGQARLVPVSTRAKQ 182 Query: 244 LLAMT---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATIS 297 L+ + + + + K A +A + S H +R AT Sbjct: 183 ALSRWLALRPTGSNYLFPSRSGHLTRIRLYQMLKELAVRADLPPEKLSPHVLRHAFATHL 242 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 + GA L G + + YT ++ R+ +V+ P Sbjct: 243 LEGGADLRALQTLLGHADIATTQIYTHV---------DAARLVKLVNERHP 284 >gi|296283728|ref|ZP_06861726.1| integrase [Citromicrobium bathyomarinum JL354] Length = 304 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 40/294 (13%), Positives = 92/294 (31%), Gaps = 28/294 (9%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-T 129 I ++ + A N+ ++ + + G T + + Sbjct: 3 ARAIEDFLAALAVDRGAAANTLAAYRRDLEGAVGIVG--PLEDATRTDLARLGAAWADLA 60 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED--------MQQ 181 P++ + +++R F + + + NP ++ P ++ + ++ Sbjct: 61 PATVARKASALRQFFGFLEDEGLRSDNPSAALPSPTKRRSLPKILDHAQVEALFAQAERE 120 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDG 240 + + E L SGLR S+ + + + + G V L Sbjct: 121 AEEGDPAALRLLAMIELLYGSGLRASELVTLPLSAVPRDAPFLTITGKGGKERLVPLGTR 180 Query: 241 FMKLLAMT---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSA 294 +L+ + + + + + KA A ++G++ S H +R A Sbjct: 181 ARAVLSRWLAVRPEGSPWLFPSRGKHLTRIRLYQLLKALAERSGIDPAKISPHVLRHAFA 240 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 T + GA L G + + YT R+ ++V+ P Sbjct: 241 THLLEGGADLRALQTLLGHADIATTQIYTHVES---------ARLVALVNERHP 285 >gi|168186262|ref|ZP_02620897.1| tyrosine recombinase XerD [Clostridium botulinum C str. Eklund] gi|169295813|gb|EDS77946.1| tyrosine recombinase XerD [Clostridium botulinum C str. Eklund] Length = 292 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 45/280 (16%), Positives = 104/280 (37%), Gaps = 20/280 (7%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH--IRSGVESRKHT 129 + + +Y + L+ N+ ++ + + + D + I + V++ K Sbjct: 2 EEYLRQYIEDMRKKELSKNTIEAYNRDIIKFGKFLKERDENILNADMVSIMAYVQTLKKE 61 Query: 130 PSS---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK--- 183 + I+ + S+R +K+ +R NP ++ E PK K T +++++F Sbjct: 62 KKADSSIIRSIVSIRNFYKYLIRIGKDVDNPLINYEVPKNKRNIPEVLTIDEVEKFLNAP 121 Query: 184 -SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KTGTIITVELPDGF 241 +G + + E + +G++ S+ R + + + +K + + + Sbjct: 122 ECNEYKGIRDKAMLELMYATGMKVSELLRVTIFDINLKLCYVKCRGAKDKERIIPIGSYA 181 Query: 242 MKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRK 291 + L ++ F N KM F K A +AG+NK + +R Sbjct: 182 VNCLNEYLNVRDKMSAANSEILFCNLRGGKMTRQGFWKIVKKYAKEAGINKKIDSYTLRH 241 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 A GA + G T+ + Y+ + + ++ Sbjct: 242 SFAVHLLQNGADIKSVQELLGHNTIATTQIYSSISKQNKI 281 >gi|298571314|gb|ADI87658.1| tyrosine recombinase XerC [uncultured Nitrospirae bacterium MY2-1F] gi|298571415|gb|ADI87756.1| tyrosine recombinase XerC [uncultured Nitrospirae bacterium MY3-11A] Length = 288 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 38/266 (14%), Positives = 81/266 (30%), Gaps = 27/266 (10%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMR 141 + + ++ +++ ++ D + IR V ++ SS ++ L++++ Sbjct: 5 KNASPHTLRAYKKDLEEFAAFV-KKDPASVDLYDIRGFVAAQSKQGLAKSSVMRRLSTVK 63 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFE 197 F + V NP V PK +K+D ++ + E Sbjct: 64 AFFNYLASIGAVTANPTRLVPSPKVPKHLPNFLSKDDTFTMMEKAEGIGFTAARNKAILE 123 Query: 198 FLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF 256 SGLR S+ A ++ + K V + + L + + Sbjct: 124 LFYSSGLRVSELAGADMESINLKQAMVKVRGKGKKERIVPIGSYALGALKTYLVERLLIK 183 Query: 257 INNDKQKMNA----------------TQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298 + + +++ A GV H +R AT Sbjct: 184 EDTTRPRISTDPAALFINSSGERLTDRHIRRIVVKFARLTGVEGAVGPHTLRHTFATHLL 243 Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324 +GA + G ++ + YT Sbjct: 244 QSGADLRVIQELLGHASLSTTQKYTH 269 >gi|295095176|emb|CBK84266.1| tyrosine recombinase XerC subunit [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 300 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 44/278 (15%), Positives = 96/278 (34%), Gaps = 21/278 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGV---ESRK 127 ++ + + L+ + ++++ D QI + G +++ +R V + Sbjct: 10 VNRFLRYLGVERQLSPITLLNYQRQLDAIMQIADEIGLKSWQQCDAATVRGFVVRSRKKN 69 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +P+S L+++R F W V Q + NP + PK + +D+ + Sbjct: 70 LSPASLALRLSALRSFFDWLVSQGGLKANPAKGIATPKAPRHLPKNIDVDDVNRLLDIDL 129 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243 + R E + +GLR S+ ++HL + K + + + Sbjct: 130 NDPLAVRDRAMLEVMYGAGLRLSELVNLDLKHLDLESGEVWVMGKGSKERRLPIGRNAVS 189 Query: 244 LLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 + + F + D ++++A F K G+ + H +R A Sbjct: 190 WIEHWLDLRGLFGADEDALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFA 249 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 T ++ + G + + YT D L Sbjct: 250 THMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 286 >gi|269958529|ref|YP_003328316.1| site-specific tyrosine recombinase [Anaplasma centrale str. Israel] gi|269848358|gb|ACZ49002.1| site-specific tyrosine recombinase [Anaplasma centrale str. Israel] Length = 312 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 34/281 (12%), Positives = 90/281 (32%), Gaps = 31/281 (11%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---------GDFDYRKITTKHIRSGV 123 I+++ + N+ ++E + G D +++ + +RS + Sbjct: 9 AINDWLCWLRVERKCSPNTVAAYERDIMDFYKFICGEPCERVAGLKDIQELRSAELRSWL 68 Query: 124 ESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 R SS + + +R F++ R+ + + ++ RP + + + ++ Sbjct: 69 ADRFKQGKQSSSNARAVAVVRSFFRYLHRKCGMNGSVVSNISRPIVRKSLPKVLEESQIR 128 Query: 181 QFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 + ++ L GLR S++ L + K + Sbjct: 129 KVMGEREAPHWTHTRDLAVSALLYGCGLRISEAVNVKFCDLGQDGLR-VLGKGSKERVIP 187 Query: 237 LPDGFMKLLAMTPIGKETFFINN-----------DKQKMNATQFSIWFKAKATKAGVNKS 285 + + + +++ +++ T F+ + + G+ ++ Sbjct: 188 VLPWVRRAIDEYVANCPHLRVHSASGTEYIFVGLRGGRLSRTYFAHRMRKLRRRVGLPET 247 Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT GA + G ++ + YT Sbjct: 248 TTPHTLRHSFATHLFLEGADIRVVQELLGHASLATTQIYTH 288 >gi|194336037|ref|YP_002017831.1| tyrosine recombinase XerD [Pelodictyon phaeoclathratiforme BU-1] gi|194308514|gb|ACF43214.1| tyrosine recombinase XerD [Pelodictyon phaeoclathratiforme BU-1] Length = 304 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 43/265 (16%), Positives = 92/265 (34%), Gaps = 25/265 (9%) Query: 85 GSLAVNSRISFESYFDQ--IIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTS 139 + + N+R S+ + + I + IT +HI + SS + +++ Sbjct: 23 RNFSANTRESYSNDLKRYLIFMQHRSRRLEMITKEHIEEFMGELYDIGLEASSIARNISA 82 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-------SQP 192 +R K+ V + + NP ++ +PK+ T ++ + + + Sbjct: 83 IRSFHKFLVIERTLNTNPAENIHQPKKAQYLPSVLTVDETMRLLAAPQSVNPPGKYVLRD 142 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTII----------TVELPDGF 241 + E L +G+R S+ Q L + ++ V Sbjct: 143 KAMLELLYATGVRVSELINIRQQSLYLDAGFVRIFGKGSKERLVPVGTSAIGWVTRYQAE 202 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 +++ + + F+N K++ + A AG+ K S H R AT + Sbjct: 203 LRIALVQRNSDDYLFLNARGIKLSRMALFTMVQKYAVMAGIEKNISPHTFRHTFATHLLE 262 Query: 300 AGATAHELMATYGWKTVDQAETYTK 324 GA + G +++ + YT Sbjct: 263 GGADLRAVQEMLGHRSIVTTQIYTH 287 >gi|227504282|ref|ZP_03934331.1| site-specific tyrosine recombinase XerD [Corynebacterium striatum ATCC 6940] gi|227199121|gb|EEI79169.1| site-specific tyrosine recombinase XerD [Corynebacterium striatum ATCC 6940] Length = 298 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 45/285 (15%), Positives = 89/285 (31%), Gaps = 26/285 (9%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRK 127 + L + + N+ ++ + + G D + + ++ + Sbjct: 4 EALAQTWLNHLAVEKGASANTLSNYRRDVRRYLGWLADNGIDDLADVDRGMVEEYLKFLR 63 Query: 128 HTPSSAIQFLTSM--RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT-------KED 178 ++A + R L K+ V + + ++ V PK + Sbjct: 64 GGLAAASASRALIVARGLHKFGVAEGVLDVDVAGEVAPPKNAAHLPETLRVDEVEKLIDS 123 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVEL 237 + ++ + R E L +G R S+ V + +N + T K V + Sbjct: 124 VPDGETATPIDIRDRALLEMLYGTGARISEVIALSVDDMSDNDGILVLTGKGNKQRMVPV 183 Query: 238 PDGFMKLLAMT---------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--A 286 K + F+N ++ K +AG+NKS Sbjct: 184 GSQAQKAVEEYLVRARPVLSKGKSHALFLNTRGGALSRQSAWAALKLAVQRAGLNKSISP 243 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIR 330 H +R AT + GA + G +V + YT AD +R Sbjct: 244 HTLRHSFATHLLEGGADVRTVQELLGHSSVTTTQIYTHVTADSLR 288 >gi|83644610|ref|YP_433045.1| tyrosine recombinase XerD [Hahella chejuensis KCTC 2396] gi|83632653|gb|ABC28620.1| tyrosine recombinase XerD [Hahella chejuensis KCTC 2396] Length = 284 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 46/269 (17%), Positives = 100/269 (37%), Gaps = 23/269 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 L+ N+R+S+ ++ D + + + +S+ + L++ Sbjct: 6 QGLSENTRMSYRCDLLRLAEWLMGRGRTLVDASREDLFSFLAVRMQKGAKGASSARMLST 65 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPRLA 195 +R +++ +R+ V +P L +E PK ++ +++Q + ++ ++ Sbjct: 66 LRKFYRYLLREGVVQEDPTLRIEHPKVGRLLPGAISEMEVEQLLAEPDASQPIEARDKVM 125 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLLAMTPIGKET 254 E L SGLR S+ + + ++ G L + ++ L G Sbjct: 126 LEVLYASGLRVSELVSLRLYQVNLRQGVLRVVGKGGKERLTPLGEQAVEQLEAYIKGVRP 185 Query: 255 F----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302 F + +M F K A+++G++K + H +R AT + GA Sbjct: 186 QLLAGREDGVLFPSMRGSEMTRQTFWHRIKLYASRSGISKNITPHTLRHAFATHLLNHGA 245 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRL 331 + G + + YT A + RL Sbjct: 246 DLRVVQLLLGHSDLSTTQIYTHVA-KARL 273 >gi|116747518|ref|YP_844205.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB] gi|189030087|sp|A0LEB8|XERC_SYNFM RecName: Full=Tyrosine recombinase xerC gi|116696582|gb|ABK15770.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB] Length = 328 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 94/302 (31%), Gaps = 34/302 (11%) Query: 70 TLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSG 122 T + + L+ + ++ DQ D ++ IR Sbjct: 17 TWSEASARFIAHLRHERGLSAETVRAYAGDLDQFREHMNATAGTADPRLSQVDADAIRGY 76 Query: 123 VESRKHTP--SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + + T +S + L+++R + + +E V NP V PK T+ +D+ Sbjct: 77 LAALHKTRKKTSRARKLSTLRSFYHFLNDRELVRENPAALVAYPKLGTKIPSFLGVDDVF 136 Query: 181 QFKS----------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKT 229 + FE + +G+R S+ + + ++ K Sbjct: 137 HLLDSLNAGAARAGASWRRCRNWALFECMYSTGVRVSELAGMDESDVDFHEGMVRVLGKG 196 Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQ-----------KMNATQFSIWFKAKAT 278 V + + + + ++ F + ++ + + Sbjct: 197 SKERIVPVGGKALDAVKLYLRVLDSQFPEARRMGSALFRNARGRRLTTRSVHRLLRMELR 256 Query: 279 KAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKN 335 + G+ + S HG+R AT ++GA + G + + YT D++ Sbjct: 257 RCGLWQHLSPHGLRHTFATHLLNSGADLRAIQEMLGHSNLSTTQRYTHVHVDQLMKVYDA 316 Query: 336 SR 337 + Sbjct: 317 AH 318 >gi|317504379|ref|ZP_07962363.1| integrase/recombinase XerD [Prevotella salivae DSM 15606] gi|315664501|gb|EFV04184.1| integrase/recombinase XerD [Prevotella salivae DSM 15606] Length = 307 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 50/274 (18%), Positives = 97/274 (35%), Gaps = 23/274 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRK--- 127 ++ Y + + + N+ ++ +I + D + + ++ S Sbjct: 11 ILKAYLRYLKLERNYSPNTLDAYSHDIAWLIDYCKREERDLLGLQLEDLQHFAASLHEFH 70 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 P S + L+ +R F++ + Y+ +P +E P + E++ + + Sbjct: 71 IGPRSQSRILSGIRSFFRFLLLDGYIDNDPTELLESPVLGQHLPEVLSTEEVDRLEESID 130 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFM 242 EG + R E L GLR S+ + L + I+ K V + + Sbjct: 131 LSKPEGQRNRTIIEVLFSCGLRVSELVHLKLSELYLDDGFIRVLGKGSKERLVPISPRAI 190 Query: 243 KLLAMTPIGKET----------FFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290 K L + + F+N + T I K +A +AG+ K+ H +R Sbjct: 191 KELRLWFADRVHLDIKPGEEDFVFLNRRGHHLTRTMILIMIKRQAEEAGIKKTISPHTLR 250 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324 AT GA + A G + + E YT Sbjct: 251 HSFATALLQGGADLRAIQAMLGHEHIGTTEIYTH 284 >gi|289705629|ref|ZP_06502018.1| tyrosine recombinase XerD [Micrococcus luteus SK58] gi|289557653|gb|EFD50955.1| tyrosine recombinase XerD [Micrococcus luteus SK58] Length = 338 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 44/314 (14%), Positives = 87/314 (27%), Gaps = 39/314 (12%) Query: 49 SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS- 106 +A + R + L + + LA N+ ++ ++ R Sbjct: 6 AARGSGEAEARGSRGGRGAESALAAPFRRHLEHLAVERGLAANTLAAYRRDLERYRRWLE 65 Query: 107 --GDFDYRKITTKHIRSGVESRKHT--------PSSAIQFLTSMRVLFKWAVRQEYVAIN 156 G + H+ + + SA + L ++R L ++ + + Sbjct: 66 AHGVRAPADVDPGHVSGFLRALGTGEDGGRPLAVRSAARVLAAVRGLHRFWALEGLTPAD 125 Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRA 212 P V PK + E + + + R EFL +G R S+ Sbjct: 126 PARDVHPPKPGDRLPKALPVEQVTALLEAVPVDTPAGLRDRALLEFLYGTGARISEVVGL 185 Query: 213 GVQHLQNNIFSIKTQKTG---------TIITVELPDGFMKLLAMTPIGKETFFINNDKQ- 262 V + + V + L + + + Sbjct: 186 DVDDVVGLAQTGDDGGQPVVRLFGKGSKERVVPIGSYAAAALDAWLVRGRPTIMTGVTRS 245 Query: 263 -----------KMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMA 309 +++ K A +AG+ + S H +R AT GA + Sbjct: 246 TPALFVNARGGRLSRQSAWAVLKRAAERAGLEADVSPHTLRHCFATHLLAGGADVRVVQE 305 Query: 310 TYGWKTVDQAETYT 323 G +V + YT Sbjct: 306 LLGHASVTTTQVYT 319 >gi|116333414|ref|YP_794941.1| integrase [Lactobacillus brevis ATCC 367] gi|116098761|gb|ABJ63910.1| tyrosine recombinase XerD subunit [Lactobacillus brevis ATCC 367] Length = 298 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 41/270 (15%), Positives = 79/270 (29%), Gaps = 24/270 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKI---TTKHIRSGVESRKHTPSSAI---QFLT 138 LA NS S+ + I + + + T S ++ Sbjct: 19 QGLAANSVTSYTQELRNLGTYLAQQHLTSFKDADRLTIMAYLSNLTATGKSRNSVIHAVS 78 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194 ++R +++ V+ + NP +V PK T ++ + + G + R Sbjct: 79 ALRKFYRYLVQTHQMTTNPMANVAAPKHAEHLPAVLTVAEVDRLLAAPDTTTKYGLRDRA 138 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253 E + +GLR S+ + L + K + + D + Sbjct: 139 ILEVMYATGLRVSELVHLKLADLHLEMGLIQTLGKGDKERIIPIGDVATDWINRYLQTSR 198 Query: 254 TFFINNDKQKM----------NATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301 + + K A +NK + H +R AT + G Sbjct: 199 PVLLKQRTSPYLFLNAHGGGLSRQAIWQKIKQYVAVAQINKDVTPHTLRHSFATHILENG 258 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRL 331 A + G + + YT + RL Sbjct: 259 ADLRVVQELLGHADITTTQIYTH-ISKKRL 287 >gi|206577103|ref|YP_002241126.1| tyrosine recombinase XerC [Klebsiella pneumoniae 342] gi|206566161|gb|ACI07937.1| tyrosine recombinase XerC [Klebsiella pneumoniae 342] Length = 300 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 43/280 (15%), Positives = 94/280 (33%), Gaps = 21/280 (7%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSG---VES 125 + + + L+ + +++ D + ++G +++ +RS Sbjct: 8 ACVDRFLRYLGVERQLSPITLTNYQRQLDALIALADEAGLKSWQQCDAAQVRSFAVRSRR 67 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 P+S L+++R F W V Q +A NP + PK + +D+ + Sbjct: 68 AGLGPASLALRLSALRSFFDWMVSQGELAANPAKGIAAPKIPRHLPKNIDVDDVNRLLDI 127 Query: 186 WSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGF 241 + R E + +GLR S+ ++HL + K + + Sbjct: 128 DLNDPLAVRDRAMLEVMYGAGLRLSELVNLDIKHLDLESGEVWVMGKGSKERRLPIGRNA 187 Query: 242 MKLLAMTPIGKETFFINND-------KQKMNATQFSIWFKAKATKAGV--NKSAHGVRKF 292 + + + F ++D ++++A F K G+ + H +R Sbjct: 188 VAWIEHWLDLRGLFGTDDDALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHS 247 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 AT ++ + G + + YT D L Sbjct: 248 FATHMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 286 >gi|85706394|ref|ZP_01037488.1| tyrosine recombinase XerC [Roseovarius sp. 217] gi|85669167|gb|EAQ24034.1| tyrosine recombinase XerC [Roseovarius sp. 217] Length = 306 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 45/289 (15%), Positives = 90/289 (31%), Gaps = 29/289 (10%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSG 122 + +S + + A N+ ++ +R G +ITT +R+ Sbjct: 7 RDALSAWLAAQKALKGAAANTIDAYARDVGDFLRFMTQHHGETQGLGALSRITTSDMRAW 66 Query: 123 VESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + + P S + L++++ ++W +E LS PK + + RP + E Sbjct: 67 MAHTRGGDVGPRSLARKLSAVKSFYRWLSEREGFEPTAVLSTRSPKFQRKLPRPLSPEAA 126 Query: 180 QQFKSF-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 + ++ + L GLR S++ L K G Sbjct: 127 SEMIDTLEVQSLTPWIAARDQAVVTLLYGCGLRISEALGLTGADLPIGTVLRILGKGGKE 186 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKM-------NATQFSIWFKAKATKAGVNKS 285 V + + + N + + + + G+ + Sbjct: 187 RLVPVIEPARAAVTQYARLCPYDIPRNGPLFLGARGGALSPRLIQKVMEQTRAQLGLPAT 246 Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R AT +AG + G ++ + YT G D RL Sbjct: 247 ATPHAMRHSFATHLLNAGGDLRAIQELLGHASLSTTQAYT-GVDTARLM 294 >gi|332186170|ref|ZP_08387916.1| phage integrase family protein [Sphingomonas sp. S17] gi|332013985|gb|EGI56044.1| phage integrase family protein [Sphingomonas sp. S17] Length = 367 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 66/346 (19%), Positives = 121/346 (34%), Gaps = 32/346 (9%) Query: 14 ERTRHG-KIIYYFRKGHGRRIRLPY-------PHESTFIPAYMSALTGSTPKREYINSPR 65 ++ +G + YY+ +G G L P F+ +Y +A+ Sbjct: 13 KKLANGSRATYYYLRGSGALNPLEGDEDQPFAPGTPAFMRSYYAAIDA--------PRRA 64 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIR 120 + TL+ +I Y KS + LA ++ + + +I K G KI + + Sbjct: 65 RTAGTLQSVIDAYEKSPQFTKLAPRTQRDYGTALLKISDKFGTHPLAVVEDPKIRIRFLE 124 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 E K +P A L +R++ +W + ++ N ++ R + W D++ Sbjct: 125 WRDEMAKSSPRQADAVLGVLRIVLEWGRDRGHLIHNHATRPKKVYRADRADKLWLPADIE 184 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 ++ + RLAFE L +G R D ++ Sbjct: 185 ALRAV--ASPEIRLAFELALGTGQRKGDLLALTWSSYDGQRIQLRQ-AKRKRFVDMPVTR 241 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISAD 299 +K L + + + + F ++ +AG N H +R + T+ A Sbjct: 242 SLKALLDAQPRTAATILTRNGKPWGSVNFDHRWRETVLQAGRNGLHFHDLRGTACTVLAQ 301 Query: 300 AGATAHELMATYGWKTVDQAET----YTKGADRIRLGIKNSRRISS 341 AGAT E+ A GW TV Y A L ++ + Sbjct: 302 AGATPSEIAAMLGW-TVSTVARMLDLY--QAMTASLSDSAVAKLEA 344 >gi|228473046|ref|ZP_04057803.1| tyrosine recombinase XerD [Capnocytophaga gingivalis ATCC 33624] gi|228275628|gb|EEK14405.1| tyrosine recombinase XerD [Capnocytophaga gingivalis ATCC 33624] Length = 301 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 46/279 (16%), Positives = 95/279 (34%), Gaps = 25/279 (8%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG----DFDYRKITTKHIRS--GV 123 K L+ ++ ++ NS S+ +++ + I+ + +R Sbjct: 6 WKKLLKDFEHYLKIERGMSPNSVQSYLFDLEKLSDYINLHQIEERPENISAETLREFVYQ 65 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 +S++ S + ++S++ FK+ + + Y P ++ PK + + E++ Sbjct: 66 QSKELQARSQSRLISSLKSFFKYLLLENYREDFPMEYIDTPKYGMKLPDTLSVEEIDALI 125 Query: 184 S----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK------------TQ 227 + SEG + R E L GLR S+ + L I+ Sbjct: 126 AGIDLSTSEGHRNRAIIETLYGCGLRVSELVNLHLSDLFFEEGFIRVLGKGDKQRLVPIS 185 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-- 285 + K + + F+N +++ K A G+ K+ Sbjct: 186 EYTQKQINNYIQHQRKEVPQVKEFTDIVFLNRRGKQLTRAMIFTIIKQTAAAIGLTKTIS 245 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H R AT + GA + G +++ E YT Sbjct: 246 PHTFRHSFATHLLENGANLRAIQLMLGHESITTTEIYTH 284 >gi|295426272|ref|ZP_06818932.1| tyrosine recombinase XerC [Lactobacillus amylolyticus DSM 11664] gi|295064011|gb|EFG54959.1| tyrosine recombinase XerC [Lactobacillus amylolyticus DSM 11664] Length = 307 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 45/278 (16%), Positives = 99/278 (35%), Gaps = 27/278 (9%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRKH 128 L Y K+ + N+ +S+++ + G D+ KI T+ I ++S Sbjct: 8 ALFISYLKNE--RQYSKNTILSYQTDLLEAKSFWRENGGFVDWDKIQTRDIEVYLQSMAE 65 Query: 129 TPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 S + ++S+R +++ +++ + ++P ++ + + + + +M+Q S Sbjct: 66 RKLSRNSQMRKMSSLRSFYRFLAKRKLIKVDPTQTIVLRTEERKLPQFFYAPEMKQVISS 125 Query: 186 WSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDG 240 + + FE +G+R S+ + + ++ I K V D Sbjct: 126 LQGNTALTERNLALFELFYTTGMRVSEVSSLKINQVDFDLQMILVHGKGNKDRYVAFDDK 185 Query: 241 FMKLLAMT-----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287 L ++ F+NN Q + + KAG+ H Sbjct: 186 TKSALQNYLENARPKLLGSKADQDFIFLNNQGQPLTDRGIEYIMQRTFNKAGISGKVHPH 245 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 +R AT + GA + G + + + YT Sbjct: 246 ELRHTFATAMLNNGADLRTVQELLGHENLSTTQIYTHV 283 >gi|169826676|ref|YP_001696834.1| hypothetical protein Bsph_1094 [Lysinibacillus sphaericus C3-41] gi|168991164|gb|ACA38704.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41] Length = 280 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 43/270 (15%), Positives = 92/270 (34%), Gaps = 12/270 (4%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV---ESRK 127 + I ++++ + LA + ++ Q+ + + + KIT K IR + + Sbjct: 5 INEFIEKFKEEYMYR-LAPRTIRGYQLSVKQLQDYT-EKPFNKITKKDIRHWMMVLNEKG 62 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + +S L ++ +++ + + INP + PK R +K+ + Sbjct: 63 YKQNSIKNKLIGLKTFYQYCFDEGLMIINPAKDIPFPKVAETLPRYLSKKQLTCLLEHVC 122 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT--QKTGTIITVELPDGFMKLL 245 E R E L +G+R S+ + + + + SI+ K V + L Sbjct: 123 ERLYERTIIEVLYATGVRISELVKIKKEDINWSERSIQILEGKGNRSRIVLFNLDCAQHL 182 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIW-----FKAKATKAGVNKSAHGVRKFSATISADA 300 + K F+ + + G + H +R A A+ Sbjct: 183 ETYLNSRTDKLPYVFVDKKETRMIRSREINTLFQFYSKQLGFRVTPHMLRHTFAAHLAER 242 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIR 330 G + G +T + Y + + R Sbjct: 243 GMPLECIQQLLGHETTHSTQLYARLYNHAR 272 >gi|183602465|ref|ZP_02963831.1| probable integrase/recombinase [Bifidobacterium animalis subsp. lactis HN019] gi|219683221|ref|YP_002469604.1| tyrosine recombinase XerD [Bifidobacterium animalis subsp. lactis AD011] gi|241191181|ref|YP_002968575.1| Integrase [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196587|ref|YP_002970142.1| Integrase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218384|gb|EDT89029.1| probable integrase/recombinase [Bifidobacterium animalis subsp. lactis HN019] gi|219620871|gb|ACL29028.1| tyrosine recombinase XerD [Bifidobacterium animalis subsp. lactis AD011] gi|240249573|gb|ACS46513.1| Integrase [Bifidobacterium animalis subsp. lactis Bl-04] gi|240251141|gb|ACS48080.1| Integrase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295794174|gb|ADG33709.1| Integrase [Bifidobacterium animalis subsp. lactis V9] Length = 307 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 45/282 (15%), Positives = 88/282 (31%), Gaps = 31/282 (10%) Query: 77 EYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRKHTPSS 132 + L+ + ++E+ DQ +R G+ K IT+ + V ++ + +S Sbjct: 11 RFLAHIDVERGLSAATVQAYENDIDQYVRWLGEQGIAKAASITSNDVEDFVAAQSKSGTS 70 Query: 133 A---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 A + L S+ + ++ + VA + SV PK T +++Q+ Sbjct: 71 AVSLARRLASIHMFHRFMQSERVVADDVSQSVRPPKSAETLPEVLTVDEVQRLLDAARHD 130 Query: 190 S-------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGF 241 + E + +G R S++ + + ++ T K V Sbjct: 131 DASEAVSMRDSALLELMYATGCRVSEAVGLDFTDVDMDAQVVRLTGKGAKQRLVPFGTYA 190 Query: 242 MKLLAMTPIGKET--------------FFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285 L F+N +++ K A V Sbjct: 191 ANALRAYVEHARPELENKAKGERERSAIFLNKRGKRLTRQSVWEIIKHAGALAHVSKPLH 250 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 H +R AT GA + G +V + YT + Sbjct: 251 PHTLRHSFATHMLQGGADVRTVQELLGHASVKTTQMYTHVSQ 292 >gi|242280626|ref|YP_002992755.1| integrase family protein [Desulfovibrio salexigens DSM 2638] gi|242123520|gb|ACS81216.1| integrase family protein [Desulfovibrio salexigens DSM 2638] Length = 307 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 98/302 (32%), Gaps = 34/302 (11%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVE--S 125 L+ I + +L+ + +++ Q D I +R ++ S Sbjct: 3 LEESIHTFLNHCIIERNLSELTMKAYQKDLLQFKHFIPDSTDSIHDINKFILRDYIKFIS 62 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKS 184 ++ P S + + +++ F + R + + +P + + R + +K + Sbjct: 63 NQYKPRSIKRKIATLKSFFNFMERDDIIETSPFRKIHLKIDRSKILPKTISKSSINNLLK 122 Query: 185 F--------------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230 + + E ++ E L +G+R S+ C+ + IK G Sbjct: 123 YTYTERAKYQLSGRGYREATRDIAIIETLFMTGIRVSELCQITTSSMDLINEQIKITGKG 182 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFI---------NNDKQKMNATQFSIWFKAKATKAG 281 V LL + N DK+ ++ + + G Sbjct: 183 KKERVIPICANNALLILREYETLYRDHLLPDSPFFLNRDKRPISDQSVRRIIRKYCSMCG 242 Query: 282 VN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK---GADRIRLGIKNS 336 + + H R AT+ + G + G ++ E YT + R L +K+ Sbjct: 243 IPEHVTPHMFRHTIATMLLENGVDIRNIQTLLGHSSLSVTEIYTHVSLSSQREILSMKHP 302 Query: 337 RR 338 R+ Sbjct: 303 RK 304 >gi|171463113|ref|YP_001797226.1| tyrosine recombinase XerD [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192651|gb|ACB43612.1| tyrosine recombinase XerD [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 307 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 50/283 (17%), Positives = 92/283 (32%), Gaps = 25/283 (8%) Query: 73 WLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSGVE-SRK 127 I + + LA NS ++ + + D +T K + + + R Sbjct: 14 EAIERFCDACWLEDGLAQNSLAAYRRDLLLLAQWLYKDSGGDLYGVTEKDLTAYIAYRRA 73 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 ++A + LT + ++ A+R V +PC+ + K+ + +++ + + Sbjct: 74 DKATTANRRLTVFKRFYRHALRMNLVKSDPCMGLRAAKQALRFPKTLSEDQVTALLNAPD 133 Query: 188 E----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGF 241 G + R E + SGLR S+ L N ++ V Sbjct: 134 IETSLGLRDRTMLELMYASGLRVSEIVSLKTAALGLNEGVVRVVNGKGGKERLVPFGGEA 193 Query: 242 MKLLAMT-----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHG 288 + L F + + F K AT A ++ S H Sbjct: 194 GQWLRRYLAEARTPLLEGKTSDAVFVGRHTGTGLTRQAFWALIKRYATVANISVALSPHT 253 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +R AT + GA + G + + YT A R RL Sbjct: 254 LRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVA-RERL 295 >gi|154252172|ref|YP_001412996.1| tyrosine recombinase XerD [Parvibaculum lavamentivorans DS-1] gi|154156122|gb|ABS63339.1| tyrosine recombinase XerD [Parvibaculum lavamentivorans DS-1] Length = 319 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 46/290 (15%), Positives = 91/290 (31%), Gaps = 35/290 (12%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKH--- 128 + + + A N+ ++E D + + IR +E+ Sbjct: 12 LEAFLEMLSAERGAARNTLDAYERDLKDFSGFLVSRGRDLVQASANDIRQYLENLSDQGL 71 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + S+A + L+++R + + +PC S+E P+R + T E++ S Sbjct: 72 SASTAARRLSAIRQFHGFLFAEGVRTDDPCGSIEGPRRARPLPKTLTVEEVDALLSAAQR 131 Query: 189 G-------------SQPRLAFEFL--LYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTI 232 + RL +GLR S+ + ++ + K G Sbjct: 132 AEDGRTQEESVLAYKRARLVCLMEVLYATGLRVSELVGLPLSAVRGQERFLAVSGKGGRE 191 Query: 233 ITVELPDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 V L + + + F + + +F+ K A AG+ Sbjct: 192 RLVPLSETARAAIDAYLPLRSLRLGEQVSPWLFPSRGRQGHLTRHRFAQLLKDLAVAAGL 251 Query: 283 N---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + S H +R A+ GA + G + + YT D Sbjct: 252 DASRVSPHTLRHAFASHLLANGADLRAVQQMLGHADISTTQIYTHVLDER 301 >gi|229192133|ref|ZP_04319101.1| Prophage LambdaBa02, site-specific recombinase, phage integrase [Bacillus cereus ATCC 10876] gi|228591340|gb|EEK49191.1| Prophage LambdaBa02, site-specific recombinase, phage integrase [Bacillus cereus ATCC 10876] Length = 376 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 49/332 (14%), Positives = 103/332 (31%), Gaps = 32/332 (9%) Query: 27 KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS 86 G ++I ++ +T +Y NS + L+ + + S Sbjct: 23 TGKRKQITKGGFKTKKAAQEEVAKVTNDLANGDYENSDIR----FSQLVEIWMQEKE-SS 77 Query: 87 LAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS---MRV 142 ++ ++ +++ + G+ I + + + + + ++ Sbjct: 78 CRPSTLYQYKRILRSRVMPEFGEKRLSDIKPLTVHNFHQKLLKEGLTTKYISSVDVMLKQ 137 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202 + V E + NP +RPK K + WT E+ +F + +AF L++ Sbjct: 138 ILDKGVELEMINSNPAKKAKRPKVKKKAQASWTIEEAMKFMEYAKIQGSYYIAFVLALHT 197 Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKT-----------------GTIITVELPDGFMKLL 245 G+R + + + I Q+T + + +LL Sbjct: 198 GMRIGEVLALQWKDINFESKIIHVQRTLTLVDGKYELGETKTEASNRMIPMTEELMGELL 257 Query: 246 AMTPIGKETFFINNDKQKM----NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300 K+ F + + KA V H +R+ TI D+ Sbjct: 258 EYQSHKKDNSFDLLICTRNKKIVHPYTIRYQMKALCEAIDVPYIRFHDIRRTFTTILIDS 317 Query: 301 GATAHELMATYGWKTVDQA-ETYTKGADRIRL 331 GA A + G V YT + ++ Sbjct: 318 GANAKVVSKLLGHTNVSTTLNIYTDVYEERQI 349 >gi|167628445|ref|YP_001678944.1| tyrosine recombinase xerd, putative [Heliobacterium modesticaldum Ice1] gi|167591185|gb|ABZ82933.1| tyrosine recombinase xerd, putative [Heliobacterium modesticaldum Ice1] Length = 328 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 41/296 (13%), Positives = 90/296 (30%), Gaps = 32/296 (10%) Query: 76 SEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRS---GVESRKH 128 + L+ N+ ++ + + D +T ++ R Sbjct: 28 DAFLAHLAVERGLSGNTIDAYRRDLADLAAFLAERGIGDPADVTRSDLQDYLYHTYRRGL 87 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + ++ + L +++ F + + +P ++ P+ + E++ Sbjct: 88 SAATRARRLAAIKGYFGFLFDEAIRRDDPTELIDGPRLQRLLPDVLNVEEVAALLQAPPR 147 Query: 189 ---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKL 244 G + R E + GLR S+ + ++ ++ ++ V L Sbjct: 148 TIVGLRDRAMLETMYACGLRVSELIALTLDQVRLDLGLVRVVGKGMKERIVPLGGLAAAA 207 Query: 245 LAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKF 292 + ++ F+N + + F KA A +AG+ + H +R Sbjct: 208 IEEYLSRTRGTLAGHGAEKHLFLNQRGKPLTRQGFWKILKAYAAEAGIAKEVTPHTLRHS 267 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 AT GA + G V + YT R+ V D P Sbjct: 268 FATHLLSNGADLRAVQEMLGHADVSTTQIYTHLT---------MGRLREVYDRSHP 314 >gi|299065844|emb|CBJ37023.1| site-specific tyrosine recombinase [Ralstonia solanacearum CMR15] Length = 311 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 46/285 (16%), Positives = 84/285 (29%), Gaps = 27/285 (9%) Query: 73 WLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHT 129 I + + LA N+ ++ + + + +R Sbjct: 17 EAIQRFCDALWLEDGLARNTLDAYRRDLTLYAQWLAGRGKALDQTEDADLSDYFAARHED 76 Query: 130 --PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 S+A + T + F+WA+R+ V +P + K+ + ++ ++ + Sbjct: 77 SLASTANRRRTVFKRFFQWALREHVVNADPTRLLPTAKQPPRVPQTLSEAQVEALIAAPD 136 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGF 241 G + R E + SGLR S+ + N ++ V Sbjct: 137 VDAPLGLRDRAMIELMYASGLRVSEIVALKTVEVGLNEGVVRVIGGKGGKDRLVPFGAEA 196 Query: 242 MKLLAMTPIGKETFFINNDKQK-------------MNATQFSIWFKAKATKAGV--NKSA 286 L Q+ M F K A +A + S Sbjct: 197 GDWLRRYLQDGHKGRTALLGQRTADALFVTARGDGMTRQAFWYLIKRYAQRADIHAPLSP 256 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 H +R AT + GA + G + + YT A R RL Sbjct: 257 HTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVA-RERL 300 >gi|322421383|ref|YP_004200606.1| tyrosine recombinase XerC [Geobacter sp. M18] gi|320127770|gb|ADW15330.1| tyrosine recombinase XerC [Geobacter sp. M18] Length = 292 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 46/289 (15%), Positives = 97/289 (33%), Gaps = 29/289 (10%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESRK--HTPSS 132 Y ++ +++ ++ ++ S +Q + + G+ ++ IR + H SS Sbjct: 11 YLETE--RNVSPHTLAAYRSDLEQFASSLSRHGEPLPEQVDHLAIRRYLAQLHKGHAKSS 68 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----E 188 + L+++R LF++ +R+ + NP V PK++ + + + Sbjct: 69 IGRKLSAIRALFRFLLREGRLEKNPAELVSTPKKEKRLPFHLNIDQVSALVEAPAGAAGL 128 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLLAM 247 + R E L G+R S+ V L + + G V + K L+ Sbjct: 129 PLRDRAVLETLYSCGIRVSELTGMNVGDLDLHQALARVMGKGGKERIVPVGSFARKALSA 188 Query: 248 TPIGKETFFINNDKQ------KMNATQFSIWFKA--KATKAGVNKSAHGVRKFSATISAD 299 + + ++ + A S H +R AT + Sbjct: 189 YLEERGDPPPCDPLILNSRGGRLTRRSVARIVDRHMLMIAAMRKVSPHTLRHTFATHLLE 248 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 GA + G ++ + YT+ + R+ V D P Sbjct: 249 GGADLRCIQELLGHASLSTTQKYTQVS---------IDRLMEVYDQAHP 288 >gi|253699136|ref|YP_003020325.1| tyrosine recombinase XerC [Geobacter sp. M21] gi|251773986|gb|ACT16567.1| tyrosine recombinase XerC [Geobacter sp. M21] Length = 293 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 44/294 (14%), Positives = 92/294 (31%), Gaps = 29/294 (9%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRK-- 127 + ++ +++ ++ ++ S +Q + ++ IR + Sbjct: 5 LEQFYSYLETERNVSPHTLAAYRSDLEQFLSFLAKEREEPRAEEVDHLAIRRYLAQLHKG 64 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 SS + L+++R L+++ +R+ + NP V PKR+ + + + + Sbjct: 65 CAKSSIGRKLSAIRALYRYLMREGKLEKNPAELVSTPKREKRLPFHLNIDQVSALVTAPA 124 Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGV-QHLQNNIFSIKTQKTGTIITVELPDGFM 242 GS + R E L G+R S+ V + K G V + Sbjct: 125 GGSELPLRDRAILETLYSCGIRVSELTGMNVGDMDLAAGLARVMGKGGKERLVPVGSCAG 184 Query: 243 KLLAMTPIGKETFFI------NNDKQKMNATQFSIWF--KAKATKAGVNKSAHGVRKFSA 294 LA + N ++ + S H +R A Sbjct: 185 SALAAYLAERADPGPAEPLILNARGGRLTRRSVARIVDAHMLMIATMRKVSPHTLRHTFA 244 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 T + GA + G ++ + YT + ++ V D P Sbjct: 245 THLLEGGADLRAIQELLGHASLSTTQKYTHVS---------IDKLMEVYDKSHP 289 >gi|126733327|ref|ZP_01749074.1| tyrosine recombinase [Roseobacter sp. CCS2] gi|126716193|gb|EBA13057.1| tyrosine recombinase [Roseobacter sp. CCS2] Length = 304 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 38/290 (13%), Positives = 82/290 (28%), Gaps = 29/290 (10%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRS 121 L + + A N+ ++++ + G ++T + +R+ Sbjct: 6 LSDALGAWLAGQRALAGTAENTLKAYQTDVMGFLAFMTQYNGESQGLAPIARVTVRDMRA 65 Query: 122 GVES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + R S + L++++ ++W +E LS PK + + RP Sbjct: 66 WMAHERGRGIGARSLARSLSAVKSFYRWLAEREGFEPTAVLSTRAPKFQRKLPRPLEVNA 125 Query: 179 MQQFK-------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 + ++ L GLR S++ + K G Sbjct: 126 ASAMIDTVELQANEPWVAARDAAVVTLLYGCGLRISEALGLTSVDVPLPEVLRIVGKGGK 185 Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKM-------NATQFSIWFKAKATKAGVNK 284 V + + +A + + + + G+ Sbjct: 186 ERIVPVIAEAREAVATYVRLCPYPVAQDQPIFRAVRGGILSPRAIQKVMEQARLQLGLPA 245 Query: 285 S--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 + H +R AT AG + G ++ + YT D L Sbjct: 246 TATPHAMRHSFATHLLAAGGDLRAIQELLGHASLSTTQAYT-AVDAAHLM 294 >gi|242373543|ref|ZP_04819117.1| tyrosine recombinase XerC [Staphylococcus epidermidis M23864:W1] gi|242348906|gb|EES40508.1| tyrosine recombinase XerC [Staphylococcus epidermidis M23864:W1] Length = 286 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 33/266 (12%), Positives = 92/266 (34%), Gaps = 22/266 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH------TPSSAIQFLT 138 + + + S+ Q ++TT + + ++ + ++ Sbjct: 6 RNFSEYTLKSYHDDLVQFNEFLNSEHL-ELTTFEYKDARNYLSYLYSNNLKRTTVSRKIS 64 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPRL 194 ++R +++ + Q+ +NP + + PK++ + + +E+M + + ++G + R+ Sbjct: 65 TLRTFYEYWMTQDESVVNPFVQLVHPKKEQYLPQFFYEEEMEALFRTVEQDRTKGMRDRV 124 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253 E L +G+R S+ ++ + N K + + + + + Sbjct: 125 IIELLYATGIRVSELVNIKIKDIDMNLPGVKVLGKGNKERFIPFGEFCKQSIERYLDEFQ 184 Query: 254 TFFINNDKQ--------KMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGAT 303 + + + + AGV + H +R AT + GA Sbjct: 185 PRKAVDHEYLIVNMKGEPITERGVRYVLNDVVKRTAGVTDIHPHKLRHTFATHLLNQGAD 244 Query: 304 AHELMATYGWKTVDQAETYTKGADRI 329 + + G + YT +++ Sbjct: 245 LRTVQSLLGHVNLSTTGRYTHVSNQQ 270 >gi|51459866|gb|AAU03829.1| integrase/recombinase [Rickettsia typhi str. Wilmington] Length = 297 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 47/284 (16%), Positives = 98/284 (34%), Gaps = 35/284 (12%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRK--ITTKHIRSGVESRKH---TPSSAIQFLTS 139 +L+ NS +S++ + ITT++IR +E S + +++ Sbjct: 6 RALSKNSILSYKRDLLDFHNYLTKQKISELNITTRNIRKWIEYLASNNLHARSINRKIST 65 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-----QQFKSFWSEGSQPRL 194 ++ + + + + + A NP L+V+ PK + + + + + K EG + Sbjct: 66 IKSYYTFLISENHTAFNPVLNVDLPKYQNKLPVILSIDQIKLILEYCSKDHTPEGIRLNA 125 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNI--------FSIKTQKTGTIITVELPDGFMKLLA 246 L SGLR S+ + + N K + + D + + Sbjct: 126 MIHLLYASGLRVSELVSLKLADILTNNTSKGIVRKIFSVLGKGNKERVIVINDQAVLSIT 185 Query: 247 MTPIGKETFFINNDKQ-------------KMNATQFSIWFKAKATKAGVN---KSAHGVR 290 ++ F + M F+I K+ A G+N S H +R Sbjct: 186 KYLKIRDIFVNKAKSKNLIYLFPSSAVAGYMTRQNFAILLKSVALDIGLNPKNVSPHILR 245 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGI 333 A+ + GA + G + + YT + ++ + Sbjct: 246 HSFASHLLEGGADLRVIQELLGHADISTTQIYTHLHTNHLKQAL 289 >gi|317121982|ref|YP_004101985.1| tyrosine recombinase XerD [Thermaerobacter marianensis DSM 12885] gi|315591962|gb|ADU51258.1| tyrosine recombinase XerD subunit [Thermaerobacter marianensis DSM 12885] Length = 401 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 43/315 (13%), Positives = 102/315 (32%), Gaps = 27/315 (8%) Query: 60 YINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITT 116 + ++EY + LA + ++ + + +T Sbjct: 6 QGAATDPGTGPWAAALAEYLEILRVERGLAARTLEAYRRDLADFAAFAAGRERGPEAVTR 65 Query: 117 KHIRSGVESRKHTPS---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 + + + + + + L ++R F++ V + ++ +P + P+ R Sbjct: 66 SLVMAYLHHLRQAGRAHTTVARRLAALRGFFRYLVEEGRLSQDPVEGMTAPRAGRPLPRV 125 Query: 174 WTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229 + ++++ G + R E L +GLR S+ + L + ++ + Sbjct: 126 MSVAEVERMLEVPQPPSPAGLRDRAVLELLYATGLRVSELVGLDLDDLLLDHGLLRCRGK 185 Query: 230 G-TIITVELPDGFMKLLAMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKAT 278 G V + ++ + N+ +++ + A Sbjct: 186 GGKERVVPVAPPAVEATRIYLERGRPHLCRRPSQRALFLNHRGGRLSRQWVWHLLRRAAR 245 Query: 279 KAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 +AGV++ S H +R AT GA + G + + YT R L Sbjct: 246 RAGVSRAVSPHTIRHSFATHLLAGGADLRAVQELLGHADISTTQIYTHLT-RHHLLEAYL 304 Query: 337 R---RISSVVDSDDP 348 + R++ S +P Sbjct: 305 KAHPRLAQGTASGEP 319 >gi|227536514|ref|ZP_03966563.1| integrase/recombinase XerD [Sphingobacterium spiritivorum ATCC 33300] gi|227243591|gb|EEI93606.1| integrase/recombinase XerD [Sphingobacterium spiritivorum ATCC 33300] Length = 297 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 42/273 (15%), Positives = 93/273 (34%), Gaps = 25/273 (9%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRS---GVESRKHT 129 Y + L NS ++ + ++ D ++++ +I+ + + + Sbjct: 10 FKRYLQLE--RGLTSNSIEAYLNDIAKLEVYCTDQQLTLKQLSVHNIQEFLVWINTFDIS 67 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---- 185 P S + ++ ++ F + + + NP ++ P+ + E++ Q Sbjct: 68 PYSQSRLISGLKAFFGYLQLEGLITKNPVELIQSPRLSRKIPVVLNIEEIDQLIGALDLS 127 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKL 244 ++G + + E L GLR S+ + +L + F K + + +K Sbjct: 128 TADGMRNKAILEILYGCGLRVSELVNLRISNLFLHIDFIKVEGKGNKERLIPIGQHAIKY 187 Query: 245 LAMTPIGKETFFI-----------NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291 L + N ++ + K A K G+ K S H R Sbjct: 188 LNIYLNEIRVHQPVKAGFEDYVFLNKRGTSLSRVMIFLIIKDLAAKTGLQKEISPHTFRH 247 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324 A+ + GA + G +++ E YT Sbjct: 248 SFASHLVEGGADLRAVQDMLGHESITTTEIYTH 280 >gi|270308385|ref|YP_003330443.1| integrase/recombinase [Dehalococcoides sp. VS] gi|270154277|gb|ACZ62115.1| integrase/recombinase [Dehalococcoides sp. VS] Length = 302 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 36/283 (12%), Positives = 88/283 (31%), Gaps = 30/283 (10%) Query: 85 GSLAVNSRISFESYFDQI-------IRKSGDFD-YRKITTKHIRSGVESRKHTP---SSA 133 + N+ ++E+ Q+ K G + T + + + + K ++ Sbjct: 16 KGFSENTTEAYENDLRQMMTFADKEAAKFGKIPGWENFTRQTMLAYMLDLKERNYAITTV 75 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-----E 188 ++ + + + F + V + + NP ++ PK + ++ + E Sbjct: 76 VRKMAAAKSFFNFMVAEGKLKENPTENISTPKVGKPLPDAISISQVRALLNQPVKSGSSE 135 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAM 247 + + E L SG+R ++ V + ++ + + + + Sbjct: 136 AKRDKAMLELLYASGMRVTELVNLNVLDIDLKEGFVRCFGKGRKERMIPIYPQAAQSIQE 195 Query: 248 TPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSAT 295 F+N ++ K A +AG++ + H +R AT Sbjct: 196 YLTEIRPNLVRAETEKALFLNRRGDRLTRQGLWQILKGYAREAGLDDVVTPHTLRHSFAT 255 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRI-RLGIKNSR 337 GA + G + + YT R + + Sbjct: 256 HMLSGGADLRSVQELLGHANISTTQIYTHLTSEHIRRSYEKAH 298 >gi|294787053|ref|ZP_06752307.1| tyrosine recombinase XerD [Parascardovia denticolens F0305] gi|315226701|ref|ZP_07868489.1| tyrosine recombinase XerD [Parascardovia denticolens DSM 10105] gi|294485886|gb|EFG33520.1| tyrosine recombinase XerD [Parascardovia denticolens F0305] gi|315120833|gb|EFT83965.1| tyrosine recombinase XerD [Parascardovia denticolens DSM 10105] Length = 310 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 43/274 (15%), Positives = 92/274 (33%), Gaps = 30/274 (10%) Query: 85 GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR---KHTPSSAIQFLT 138 L+ +R ++ES + + G +I + + + V S + S + L Sbjct: 23 KGLSEATRRAYESDLKKYMAWLARHGIDRPDQIRQEDVETFVASLSQEGESSRSIARRLA 82 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-------SQ 191 S+ ++ + + V+ PK + T E++++ S + Sbjct: 83 SIHEYHRFLTSRGMAQADVSQGVKPPKAASVLPDVLTIEEVRRLLEKTSNERDTDPVVLR 142 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK---------------TGTIITVE 236 R EFL +G R S++ A + + + + ++ Sbjct: 143 DRALLEFLYATGARVSEAVGANLTDVDLDDHFARLTGKGNKQRLVPLGSYACQAMERYLD 202 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294 P ++ A F+N ++++ + A +AG+ K H +R A Sbjct: 203 GPRAQLQAKAAKGAEVNAIFLNKKGKRLSRQSVWEIVQKAADRAGITKEVHPHTLRHSCA 262 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADR 328 T GA + G +V + YT + + Sbjct: 263 THLIQGGADVRMVQELLGHASVTTTQIYTHISPQ 296 >gi|167753897|ref|ZP_02426024.1| hypothetical protein ALIPUT_02182 [Alistipes putredinis DSM 17216] gi|167658522|gb|EDS02652.1| hypothetical protein ALIPUT_02182 [Alistipes putredinis DSM 17216] Length = 298 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 43/260 (16%), Positives = 86/260 (33%), Gaps = 20/260 (7%) Query: 85 GSLAVNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGVESRKHTPS---SAIQFLT 138 L+ N+ S+ Q D RK+ I + S + L+ Sbjct: 23 KRLSENTVESYMRDLRQFAHFILRFYDVPPRKVEAPMIERYLALLYDQGREKTSQARALS 82 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRL 194 +R + + + + + P ++ PK T E++ + + +G + Sbjct: 83 GIRSFYNYLMLTDVIDSTPTQFIDTPKFGRHLPDILTVEEIDRIVAAVDTSTVKGRRDSA 142 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK- 252 E L GLR S+ + L I+ V + + + + Sbjct: 143 MLEVLYSCGLRVSELTSLRLGDLFFGEGYIRVTGKGDKQRLVPVSGAAREKIQRYLDDRA 202 Query: 253 ------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304 + F+NN ++ + +AG++K S H R AT + GA+ Sbjct: 203 TKTSASDVVFLNNRGTQLTRVMVFTILREAVHRAGIDKHISPHTFRHSFATHLLEGGASI 262 Query: 305 HELMATYGWKTVDQAETYTK 324 ++ G +++ E YT Sbjct: 263 RQVQEMLGHESILTTEIYTH 282 >gi|317476381|ref|ZP_07935630.1| tyrosine recombinase XerC [Bacteroides eggerthii 1_2_48FAA] gi|316907407|gb|EFV29112.1| tyrosine recombinase XerC [Bacteroides eggerthii 1_2_48FAA] Length = 294 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 42/276 (15%), Positives = 93/276 (33%), Gaps = 24/276 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSGV---ES 125 L + + + + + +++ ++ + GD + IR + Sbjct: 3 LTDSFLDYLLYERNYSKGTVRYYQADILELQKFGEELLGDLTPSDVDAGLIREWITSLMD 62 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 R P++ + L+S+R +K+ +R+ VA +P + PK+K + D+ + Sbjct: 63 RGCAPNTVNRKLSSVRSYYKYLLRKGMVAADPLQKITGPKKKKPLPVFLREGDVNRLLDD 122 Query: 186 W-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPD 239 EG + RL E +G+R S+ + + + T K + + Sbjct: 123 VDFGEGFEGCRDRLIIEMFYVTGMRLSELIGLDDKDIDFSASLIKVTGKRNKQRLLPFDE 182 Query: 240 GFMKLLAMTPIGKET---FFINNDKQKMNATQFSIWFKAKATKAGV-------NKSAHGV 289 + + + + + + A K + +S H + Sbjct: 183 ELRCSMQEYVNVRNQALPVRSDAFFIRKTGERLNRSIVAYIVKRNLSKVVTVKKRSPHVL 242 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 R AT + GA + G +++ E YT Sbjct: 243 RHTFATAMLNNGADLGSIKELLGHESLATTEVYTHT 278 >gi|299530798|ref|ZP_07044213.1| tyrosine recombinase XerD [Comamonas testosteroni S44] gi|298721314|gb|EFI62256.1| tyrosine recombinase XerD [Comamonas testosteroni S44] Length = 318 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 48/288 (16%), Positives = 90/288 (31%), Gaps = 26/288 (9%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF-DYRKITTK---HIRSGVESR 126 L I L+ N+ ++ R + + ++ +R Sbjct: 28 LDQFIDALLLED---GLSRNTLSAYRRDLTATARWLARLQPPKALDAALEGDLQGYFTAR 84 Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 +S+ + LT +R F WA+R++ +A +P + + K+ + T+E ++ Sbjct: 85 VEGTKATSSNRRLTVLRRYFHWALREKRIAADPTVRMLAAKQPPRMPKTLTQEQVEALLD 144 Query: 185 FW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-----------NNIFSIKTQKT 229 G + R E + SGLR S+ + L + Sbjct: 145 APDVDSPLGLRDRAMLELMYASGLRVSELVGVRMHELDLRSGVLRVTGKGRKERLVPFGQ 204 Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287 +E + + E F+ M+ F + K A AG+ S H Sbjct: 205 EAQHWLERYLQQARAAILGGQQTEEVFVTQRGAGMSRVMFWVIVKKCAQIAGINSPLSPH 264 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 +R AT + GA + G + YT A + Sbjct: 265 TLRHAFATHLLNHGADLRVVQMLLGHADISTTTIYTHVARERLKALHA 312 >gi|58040221|ref|YP_192185.1| integrase/recombinase XerD [Gluconobacter oxydans 621H] gi|58002635|gb|AAW61529.1| Integrase/recombinase XerD [Gluconobacter oxydans 621H] Length = 311 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 44/293 (15%), Positives = 97/293 (33%), Gaps = 22/293 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP--- 130 + + + A+ +R ++ S + + +RS + Sbjct: 14 VEAFLEMLAAERGAALKTRQAYASDLADFATHCAPLSLSEARGEEVRSYLAELSRAGLAA 73 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 +A + L+ +R +++ + + +P + P+ + RP +++++ + G Sbjct: 74 RTAARRLSCLRQFYRFLMLESVREDDPTERQQAPRITSSLPRPLDEDEIRLLLETGTRGH 133 Query: 191 QP-------RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFM 242 + R A E L +GLR S+ + + K G V L Sbjct: 134 ENERRDIVSRAALELLYTTGLRISELLALPATCVHVRGPMLLVRGKGGRERLVPLSQSAR 193 Query: 243 KLLAMTPIG------KETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFS 293 F + ++ + F A A KAG++ S H +R Sbjct: 194 DAADQLVHFDRDLGSPWLFPGRDPQKHLTRQGFDKILLACALKAGLDPDRVSPHVLRHSF 253 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKNSRRISSVVDS 345 A+ GA L G + + YT+ ++R+R + ++ + Sbjct: 254 ASHLLAHGADLRALQMLLGHADIATTQIYTQVMSERLRQAVAAHHPLARKAGA 306 >gi|294664569|ref|ZP_06729911.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292605653|gb|EFF48962.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 323 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 46/312 (14%), Positives = 99/312 (31%), Gaps = 37/312 (11%) Query: 46 AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK 105 A L P + ++ ++ + + +A + S+ + + R Sbjct: 7 AERRQLARHLPPVQPADASV-----IERFLDRFWAE---QGVARQTLESYRRDLEGLARW 58 Query: 106 S-----GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 G + ++P S + L+++R + +R + +P Sbjct: 59 RDGAGGGLLGIDRAALFDYLRWRTRANYSPRSTARLLSTLRAFYGLCLRDGVRSDDPTAL 118 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQH 216 ++ P+ + T+ ++ + + + R E + +GLR S+ Sbjct: 119 IDPPQLPRSLPKALTESQIEALLAAPDLDTPAGLRDRAMLELMYAAGLRVSELVNLPAVG 178 Query: 217 LQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIG----------------KETFFINN 259 + ++ V L + L + FI+ Sbjct: 179 VNLRQGVLRVTGKGSKDRLVPLGEESQHWLERYLREARPLLAANKPVTAVDGQVPLFIDV 238 Query: 260 DKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTV 316 +Q ++ QF K A AG++ S HG+R AT + GA L G ++ Sbjct: 239 SRQPLSRQQFWALVKRYAAAAGIDPVTVSPHGLRHSFATHLLNHGADLRALQMLLGHSSL 298 Query: 317 DQAETYTKGADR 328 + YT A + Sbjct: 299 STTQIYTLVARQ 310 >gi|25028473|ref|NP_738527.1| site-specific tyrosine recombinase XerC [Corynebacterium efficiens YS-314] gi|34222795|sp|Q7ZAK0|XERC_COREF RecName: Full=Tyrosine recombinase xerC gi|23493758|dbj|BAC18727.1| putative phage integrase/recombinase XerC [Corynebacterium efficiens YS-314] Length = 310 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 38/263 (14%), Positives = 88/263 (33%), Gaps = 19/263 (7%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES---RKHTPSSAIQFLTSMRV 142 + + + S + D + T ++R+ + + ++ + S++ Sbjct: 40 GRSDATVRGYRSDLRHMAATIPD--LTEFTLPNLRAWLGRAVEEGKSRATLARRTASVKS 97 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-----QPRLAFE 197 WAV+ ++ + + PK R + +F + + + E Sbjct: 98 FSTWAVKNGLISGDEAARLVSPKVTRNLPRVLGEVQAGEFMGSAAADTEDEFRRDSAILE 157 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKETFF 256 L +G+R S+ C + + ++ ++ K + L ++ Sbjct: 158 LLYATGMRVSELCGLDLGDVDHHRRMVRVLGKGDKERMIPFGKAAADALEQWLEARDRMA 217 Query: 257 INNDKQ-------KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELM 308 D +++A Q A AG + S H +R +AT D GA ++ Sbjct: 218 KVEDAMFVGVRGGRIDARQIRRIVDRTAQVAGADHLSPHSLRHTAATHLLDGGADLRQVQ 277 Query: 309 ATYGWKTVDQAETYTKGADRIRL 331 G ++ + YT + + L Sbjct: 278 EMLGHSSLQTTQIYTHVSSQRLL 300 >gi|329113917|ref|ZP_08242684.1| Shufflon-specific DNA recombinase [Acetobacter pomorum DM001] gi|326696664|gb|EGE48338.1| Shufflon-specific DNA recombinase [Acetobacter pomorum DM001] Length = 392 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 50/327 (15%), Positives = 93/327 (28%), Gaps = 16/327 (4%) Query: 14 ERTRHGKIIY--YFRKGHG-RRIRLPYPHESTFIPAYMSALTGSTPKR-----EYINSPR 65 G+ IY FR G RR+ + T A A+ + R Sbjct: 44 RVHPSGRKIYLAQFRAGGRIRRVNIGPHGPLTPDQARTEAMKHLSDVRLGSDPGAQRDRL 103 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSGVE 124 + T+K + +++ + D I K G IT + + Sbjct: 104 RAAATMKEFGKRFLDEHVASHCKPSTQYEYRRCVDLFIIPKLGTLKVIDITRADVVELHQ 163 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 K TP A + L + ++F A + + + K + D Sbjct: 164 GLKETPYQANRVLGVLSIMFTLADTWGVRSDGSNPCWKVKRYKEVKRERYLTPDELARLG 223 Query: 185 FWSEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELP 238 + LL +G R + +++ ++ KTG + Sbjct: 224 KVLREAEGEPEAAYCIRLLLLTGCRLGEIQTLKWEYVDARAGVLRLPDSKTGAKVVPIGK 283 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATIS 297 L + I + I + T ++ +AG++ H +R A+ + Sbjct: 284 AALDVLADIPRIEGNPYVITGKMEGQYLTDTQKPWRRLRARAGLDTLRIHDLRHSFASDA 343 Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324 GA + G V Y Sbjct: 344 LQLGADLTMIGRLLGHTQVQTTARYAH 370 >gi|192362212|ref|YP_001983742.1| tyrosine recombinase XerC [Cellvibrio japonicus Ueda107] gi|190688377|gb|ACE86055.1| tyrosine recombinase XerC [Cellvibrio japonicus Ueda107] Length = 313 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 45/300 (15%), Positives = 103/300 (34%), Gaps = 25/300 (8%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESR 126 ++ + + +++ ++ ++ R +G ++ + +R V S Sbjct: 8 FAEPLAAFYTYMRSEKQFSPHTQSNYARDLEKFQRYCRDAGIQQLTEVDARAVRMAVASL 67 Query: 127 KHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF- 182 S ++L+S+R F++A+R +++INP + PK + + + QF Sbjct: 68 HRQGLAGKSLQRWLSSLRGFFQYAIRHHWMSINPADGIAAPKTPKKLPKTLDVDQTAQFV 127 Query: 183 --KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPD 239 + + R E + SGLR ++ + + T K T+ + Sbjct: 128 AVEGDDFIHKRDRALLELIYSSGLRLAEVTSLNLGDIDWGDAMVTVTGKGSKTRTLPVGS 187 Query: 240 GFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289 + L +E + FI ++++ + + + + G+ H + Sbjct: 188 VAIAALKDWLSQREQYAPASEPALFITQRGKRISHRAVQLRLQQLSVQQGMDNPVHPHML 247 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG---IKNSRRISSVVDSD 346 R A+ ++ + G + + YT D L K R SD Sbjct: 248 RHSFASHMLESSGDLRLVQELLGHANISTTQIYTH-LDFQHLAKVYDKAHPRAGRKKSSD 306 >gi|90581049|ref|ZP_01236849.1| tyrosine recombinase [Vibrio angustum S14] gi|90437745|gb|EAS62936.1| tyrosine recombinase [Vibrio angustum S14] Length = 301 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 38/286 (13%), Positives = 94/286 (32%), Gaps = 22/286 (7%) Query: 68 PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR---KITTKHIRSGV 123 P TL+ + + + L+++++ +++ ++ + + ++ +R Sbjct: 3 PRTLEQPLERFYEYLRSERELSLHTQQNYKRQLTRVAEQLVELSVDNWQQVDAGWVRQIA 62 Query: 124 ---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 SS L+++R F + V Q + NP V P++ + ++M Sbjct: 63 SKGMRDGLKASSLAMRLSALRSFFDFLVHQNVLKANPAKGVAAPRKARPLPKNLDVDEMN 122 Query: 181 QFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236 Q + + R E + +GLR ++ V+H+ + ++ V Sbjct: 123 QLLDVNDDDPLAIRDRAMMELMYGAGLRLAELVGIDVRHISLSKGDLRVIGKGDKERVVP 182 Query: 237 LPDGFMKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKAGV--NKSA 286 + +A ++ + +++ K V + + Sbjct: 183 FSGLAREWIAKWLKLRDNIAQAEEPALFVSKLGTRISTRNVQKRMAEWGQKQAVSSHINP 242 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R AT ++ + G + + YT D L Sbjct: 243 HKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTH-LDFQHLA 287 >gi|332042840|gb|EGI79039.1| integrase family protein [Lacinutrix algicola 5H-3-7-4] Length = 298 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 46/286 (16%), Positives = 99/286 (34%), Gaps = 26/286 (9%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRK----ITTKHIRSGVES 125 +++Y+ L+ NS ++ ++I+ + + I + I+ + + Sbjct: 3 WTNALNDYKLYLKIERGLSNNSIDNYSFDVKKLIKHLEENNIVSSPVNIQKQTIQEFIYA 62 Query: 126 RKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 T S + ++ ++ F + V ++Y NP +++ PK + +++++ Sbjct: 63 ISKTINSRSQSRLISGLKGFFNYLVFEDYRFDNPLDTIDAPKIGRKLPDTLSEQEINNLI 122 Query: 184 SF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELP 238 S +G + R E L GLR S+ + L + + T K V + Sbjct: 123 SAVDLSTPQGERNRCILELLYGCGLRVSELTHLKISDLFFDEGYIKVTGKGDKQRFVPIV 182 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMN-----------ATQFSIWFKAKATKAGVNKS-- 285 K + + + + K K+ A K + K+ Sbjct: 183 PATQKFINIYRNEVRNHMVIPSEYKDTLFLNRRGKQLTRAMIFTIVKSLAIKINLGKTIS 242 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 H R AT + GA + G +++ E Y D+ L Sbjct: 243 PHTFRHSFATHLLENGADLRAIQLMLGHESITTTEIYMH-VDKSHL 287 >gi|269956359|ref|YP_003326148.1| tyrosine recombinase XerD [Xylanimonas cellulosilytica DSM 15894] gi|269305040|gb|ACZ30590.1| tyrosine recombinase XerD [Xylanimonas cellulosilytica DSM 15894] Length = 331 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 42/297 (14%), Positives = 87/297 (29%), Gaps = 44/297 (14%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESR 126 L+ + +Y L+ N+ ++ + + + G + + V + Sbjct: 16 LEAALDDYLAHLRVERGLSHNTTAAYRRDLARYVRHLERLGRTSLGAVREDDVTGFVTAV 75 Query: 127 KH--------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + SS + L ++R ++A + +P V P + + + Sbjct: 76 REGADGGARLSASSTARALAAVRGWHRFAHAEGLATQDPAAEVRAPTQLRRLPHALSVDA 135 Query: 179 MQQFKSFWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-------------- 219 + + G + R E L +G R S+ V L Sbjct: 136 VTRLLDAAGVGDGPVPLRDRALLELLYSTGGRISEVVGLDVDALGWLGAGSAPGDGAGDD 195 Query: 220 -NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF-----------FINNDKQKMNAT 267 K V + + L + F+N + ++ Sbjct: 196 GPAVVRLHGKGDKQRIVPVGSYAIAALDAYLVRARPALAAAGSGTPALFLNTRGRPLSRQ 255 Query: 268 QFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 +A + +AG+ S H +R AT GA + G +V + YT Sbjct: 256 SAWAVLQAASARAGLENVSPHTLRHSFATHLLQGGADVRVVQELLGHASVTTTQIYT 312 >gi|238918092|ref|YP_002931606.1| site-specific tyrosine recombinase XerC [Edwardsiella ictaluri 93-146] gi|238867660|gb|ACR67371.1| tyrosine recombinase XerC, putative [Edwardsiella ictaluri 93-146] Length = 300 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 41/285 (14%), Positives = 91/285 (31%), Gaps = 21/285 (7%) Query: 68 PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIR--- 120 P +L + + + L+ + ++ ++ + G D+ + T +R Sbjct: 2 PESLSTPVVAFLQMMRVERQLSPRTVETYRRQLAASVALLLEGGLCDWTALDTVRVRSLV 61 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + + P+S L+++R W V + + NP V P++ + +D+ Sbjct: 62 ARSRRQGLEPASLALRLSALRSFLDWQVSRGALTANPAKGVSAPRQGRHLPKNLDVDDVN 121 Query: 181 QFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVE 236 + + + R E + GLR S+ +H K + Sbjct: 122 RLLDIDEGDTLAVRDRAMLEVMYGGGLRLSELVGLDCRHADLTTGEVWVLGKGSKERRLP 181 Query: 237 LPDGFMKLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287 + ++ L + F++ +++ F K GV + H Sbjct: 182 VGREAVRWLQKWLSLRLSLQPQDDALFVSRLGGRISPRSVQKRFAEWGVKQGVTSHIHPH 241 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 +R AT ++ + G + + YT D L Sbjct: 242 KLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTH-LDFQHLA 285 >gi|237717383|ref|ZP_04547864.1| integrase [Bacteroides sp. D1] gi|229443366|gb|EEO49157.1| integrase [Bacteroides sp. D1] Length = 292 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 45/275 (16%), Positives = 97/275 (35%), Gaps = 24/275 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSGVESRKHT 129 I + + + + + +++ Q+ G F+ ++ + IR + S Sbjct: 2 IESFLDYLQYERNYSEKTVLAYGEDIKQLQEFAQEEYGKFNPLEVEAELIREWIVSLMDK 61 Query: 130 PSS---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + + L+S+R +K+ +RQ I+P ++ PK K + +M + Sbjct: 62 GYTSTSVNRKLSSLRTFYKYLLRQGETTIDPLRKIKGPKNKKPLPVFLKENEMNRLLDET 121 Query: 187 -----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 +G + RL E +G+R S+ + + + +K + Sbjct: 122 DFGEGFKGCRDRLIIEMFYATGMRLSELIGLDNKDVDFSASLLKVTGKRNKQRLIPFGDE 181 Query: 242 MKLLAMTPIGKET---------FFINNDKQKMNATQFSIWFKA-KATKAGVNK-SAHGVR 290 ++ L + I FFI + +++ K + A + K S H +R Sbjct: 182 LQELMLEYINVRNETIPERSEAFFIRENGERLYKNLVYNLVKRNLSKVATLKKKSPHVLR 241 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 AT + A + G +++ E YT Sbjct: 242 HTFATTMLNNEAELGAVKELLGHESITTTEIYTHA 276 >gi|197287151|ref|YP_002153023.1| site-specific tyrosine recombinase XerC [Proteus mirabilis HI4320] gi|227357156|ref|ZP_03841525.1| tyrosine recombinase [Proteus mirabilis ATCC 29906] gi|34222763|sp|O31207|XERC_PROMI RecName: Full=Tyrosine recombinase xerC gi|2645802|gb|AAB87500.1| site-specific recombinase [Proteus mirabilis] gi|194684638|emb|CAR46553.1| tyrosine recombinase [Proteus mirabilis HI4320] gi|227162688|gb|EEI47655.1| tyrosine recombinase [Proteus mirabilis ATCC 29906] Length = 307 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 44/292 (15%), Positives = 98/292 (33%), Gaps = 22/292 (7%) Query: 62 NSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTK 117 + P TL I + L+ + +++ I + + + ++ Sbjct: 2 SQIIDVPETLSLAIDSFLSYIEVERRLSPVTVENYQRQLMTIAQMMVAIKINQWSLLESQ 61 Query: 118 HIRSGVESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 H+R + + P+S +++R W V Q +A+NP V PK + Sbjct: 62 HVRMLLAKSHRSGLQPASLALRFSALRSFLDWQVSQGMLAVNPAKGVRTPKSGRHLPKNM 121 Query: 175 TKEDMQQFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTG 230 +++ Q + + + R E + +GLR S+ + + ++ K Sbjct: 122 DVDEVSQLMNIDLKDPLSVRDRTMLEVMYGAGLRLSELTNLNINDIDLQEGEVRVLGKGS 181 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKAGV 282 V L ++ L +E + + ++++ F+ K G+ Sbjct: 182 KERKVPLGRKAVEWLQHWFAMRELYSPEDTAVFISTKSGKRLSVRSVQKRFELWGVKQGL 241 Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 + + H +R AT ++ + G + + YT D L Sbjct: 242 SSHVNPHKLRHSFATHLLESSGDLRAVQELLGHANLSTTQVYTH-LDFQHLA 292 >gi|289177291|gb|ADC84537.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium animalis subsp. lactis BB-12] Length = 309 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 45/282 (15%), Positives = 88/282 (31%), Gaps = 31/282 (10%) Query: 77 EYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRKHTPSS 132 + L+ + ++E+ DQ +R G+ K IT+ + V ++ + +S Sbjct: 13 RFLAHIDVERGLSAATVQAYENDIDQYVRWLGEQGIAKAASITSNDVEDFVAAQSKSGTS 72 Query: 133 A---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 A + L S+ + ++ + VA + SV PK T +++Q+ Sbjct: 73 AVSLARRLASIHMFHRFMQSERVVADDVSQSVRPPKSAETLPEVLTVDEVQRLLDAARHD 132 Query: 190 S-------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGF 241 + E + +G R S++ + + ++ T K V Sbjct: 133 DASEAVSMRDSALLELMYATGCRVSEAVGLDFTDVDMDAQVVRLTGKGAKQRLVPFGTYA 192 Query: 242 MKLLAMTPIGKET--------------FFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285 L F+N +++ K A V Sbjct: 193 ANALRAYVEHARPELENKAKGERERSAIFLNKRGKRLTRQSVWEIIKHAGALAHVSKPLH 252 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 H +R AT GA + G +V + YT + Sbjct: 253 PHTLRHSFATHMLQGGADVRTVQELLGHASVKTTQMYTHVSQ 294 >gi|222528753|ref|YP_002572635.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725] gi|222455600|gb|ACM59862.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725] Length = 325 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 42/307 (13%), Positives = 83/307 (27%), Gaps = 43/307 (14%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR-- 126 T + + L + S+ I K G + ++ I+ S Sbjct: 12 TFSQWLDIWMNQFMKIKLRPTTYSSYIQLINKHIKPKLGHIQLQNLSPLAIQECYNSLLL 71 Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 +P + + K A++ Y+ N +V PK + I+ + E + F Sbjct: 72 ENLSPKTVKNIHVIIHSALKQAIKCGYINQNVSEAVALPKVERPEIKTLSSEQVTTFLQA 131 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 S AF LY+GLR + + + +I +++ + LL Sbjct: 132 AQTDS-LYPAFLLELYTGLRRGELLGLKWDDIDFDNCTIHVKRSLVRVYDHNLKKTTLLL 190 Query: 246 AMTPIGKET-----------------------------------FFINNDKQKMNATQFS 270 F+ ++ F Sbjct: 191 QPPKTKAGYRVIPIPDFVVAELKELYEEHQRIKLSQPNFNSLNLMFVTTQGTPIDPRNFE 250 Query: 271 IWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG-AD 327 FK KA + H +R AT+ + G + + + Y+ + Sbjct: 251 RKFKQLLKKANLPNIRLHDLRHTVATLLLQQNVHPKIVQEILGHRDISTTLDIYSHVNIE 310 Query: 328 RIRLGIK 334 + Sbjct: 311 LKKKATS 317 >gi|149919028|ref|ZP_01907513.1| site-specific recombinase, phage integrase family protein [Plesiocystis pacifica SIR-1] gi|149820181|gb|EDM79600.1| site-specific recombinase, phage integrase family protein [Plesiocystis pacifica SIR-1] Length = 363 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 43/330 (13%), Positives = 92/330 (27%), Gaps = 30/330 (9%) Query: 25 FRKGHGRRIRLPYPH---ESTFIPAYMSALTGSTPKREYINSPRK-KPTTLKWLISEYRK 80 F +GRR + AY L + Y + + T + E++ Sbjct: 6 FTHPNGRRQTVRKVSPVQTRRGAEAYERQLRNALLTGTYDKEAQADQAPTFRVFAREFQT 65 Query: 81 SAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFL 137 + + +++ S E +I G I +HI ++ ++ + L Sbjct: 66 NYVATNNKPSTQRSKERVLRLHLIPFFGYMRLDAIGPRHIERYKATKLKDYSRKTLNNHL 125 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197 T +R L + A + P + K R + ++ + R+ Sbjct: 126 TILRKLLETAREWGLIDKVPSI--RWLKAAKPEFRWLDFAEAERLLEASRCEPEWRMMIL 183 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--------------------ITVEL 237 L +GLR + Q + I ++ + + Sbjct: 184 LGLRTGLRQGELLALRWQDVCFEARRIAVRQAVAEGILGTPKSGRAREVPLSPATLAEFV 243 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATI 296 +P ++ + + + +A + H +R A+ Sbjct: 244 RHQARYRHLRSPWVFCQLDGDHAGEMLTKGMCKWPLRRARDRADLEALGWHDLRHSFASH 303 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326 A G + G T++ Y A Sbjct: 304 LAMRGVPLKAIQELLGHSTIEMTMRYAHLA 333 >gi|119385228|ref|YP_916284.1| site-specific tyrosine recombinase XerC [Paracoccus denitrificans PD1222] gi|119374995|gb|ABL70588.1| phage integrase family protein [Paracoccus denitrificans PD1222] Length = 312 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 40/287 (13%), Positives = 82/287 (28%), Gaps = 28/287 (9%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD--------YRKITTKHIRSGVES 125 + + S + ++ ++++ + G + +T +R+ + Sbjct: 18 LERWLASERAARDRSDHTIRAYQADLLAFLTFLGSYHGTPALPATLAGLTQTDMRAFAAA 77 Query: 126 RKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + SA + L++ R +W + + L+ PK RP E Q Sbjct: 78 ERGRGLSARSLARRLSATRSFIRWMSDRHGFDASRALASRGPKYTRSLPRPLAPEQAQDV 137 Query: 183 K-------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 ++ L GLR S++ K G V Sbjct: 138 LEITGSTHPEAWIATRDAAVLTLLWGCGLRISEALGLNGADWPLREALTIRGKGGRERQV 197 Query: 236 ELPDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKAGVN--KSA 286 + + +A F +++ T S + G+ + Sbjct: 198 PVLPIAREAIADYLRLCPYPLQAKAPLFRGARGGRLSPTLISGAMRQARQVLGLPPTATP 257 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 H +R AT AG + G ++ + YT D L + Sbjct: 258 HALRHSFATHLLTAGGDLRTIQELLGHASLSTTQVYTGVDDAHLLAV 304 >gi|317494831|ref|ZP_07953242.1| tyrosine recombinase XerC [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917156|gb|EFV38504.1| tyrosine recombinase XerC [Enterobacteriaceae bacterium 9_2_54FAA] Length = 303 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 48/286 (16%), Positives = 97/286 (33%), Gaps = 21/286 (7%) Query: 67 KPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSG 122 + TL + + + L+ ++ S+ II SG D+R++ + +R Sbjct: 4 ETQTLALPVEAFLRFLRVERQLSPHTIESYHHQLMAIIEIVSASGLRDWRQLDSNQVRMI 63 Query: 123 VES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 +S L+S+R W V Q +++NP + PK+ + +D+ Sbjct: 64 TARSKRMGLEAASIALRLSSLRSFLDWQVSQGVMSVNPAKGISAPKQARHLPKNLDVDDV 123 Query: 180 QQFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITV 235 + S + R E + +GLR S+ +H+ K + Sbjct: 124 NRLLEIDSSDPLAVRDRTMLEVMYGAGLRLSELVGLDCRHMNMASGEVWVLGKGSKERKL 183 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSA 286 + + L +E + +D ++++ F K GV + + Sbjct: 184 PIGRTAIHWLEQWLPLREIYDPVDDAVFVSKLGKRISVRSVQKRFAEWGVKQGVTSHINP 243 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R AT ++ + G + + YT D L Sbjct: 244 HKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTH-LDFQHLA 288 >gi|300853246|ref|YP_003778230.1| phage integrase-like protein [Clostridium ljungdahlii DSM 13528] gi|300433361|gb|ADK13128.1| phage integrase related protein [Clostridium ljungdahlii DSM 13528] Length = 391 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 43/381 (11%), Positives = 97/381 (25%), Gaps = 57/381 (14%) Query: 17 RHGKIIYYFRKGHGRRI---RLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 R+GK Y R GR R+ L S TL Sbjct: 9 RNGKKYYRLRVDLGRDSDGNRIRKTFYGKSKKDAEDKLQEYKNGLNSGLSNDYDKLTLGN 68 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESRKHTPS 131 + + ++ ++ +E + I+ +++ + I+ ++ Sbjct: 69 VCKLWLFEKIKNTVKPSTFERYEGVYRIYIKSSPLYPVKLKELKSLDIQRYYNDLFNSGK 128 Query: 132 S---AIQFLTSMRVLFKWAVRQEYVAINPCLSVER-------PKRKTEGIRPWTKEDMQQ 181 S ++ F + + + Y+ N C+ + D Q Sbjct: 129 STSIIKNLDKLLKSFFNYCIDEGYIVRNYCIGKSITIPESNSVNENKKDDITVFTVDEQN 188 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS------------------ 223 + + + F L +GLR + + + Sbjct: 189 QFINAVQDHRLKALFLLDLGTGLREGEILGLKWSDIDFENCTLSVKRAIKGVTLIEGTKR 248 Query: 224 ------IKTQKTGTIITVELPDGFMKLLAMT--------------PIGKETFFINNDKQK 263 + +I T+ P+ + +L + F Sbjct: 249 NYHLIEQTPKTKNSIRTIPFPENLIPILEKHQLQQKEEKIKAGPAYTKNDYVFCTELGLP 308 Query: 264 MNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-T 321 ++ ++ + K H +R AT + + G ++ Sbjct: 309 IDPRNLRRSYERVLKNNNIPYKKFHSLRHTFATRLFENNVPLKTVQMLLGHSNINITANI 368 Query: 322 YTKGADRIRLGIKNSRRISSV 342 YT + K +I+S+ Sbjct: 369 YTHVMPPEK--FKAIDKINSI 387 >gi|319655065|ref|ZP_08009133.1| hypothetical protein HMPREF1013_05756 [Bacillus sp. 2_A_57_CT2] gi|317393243|gb|EFV74013.1| hypothetical protein HMPREF1013_05756 [Bacillus sp. 2_A_57_CT2] Length = 279 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 47/263 (17%), Positives = 96/263 (36%), Gaps = 11/263 (4%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-- 128 + + Y+ + + ++ +I+ GD ITT+ I+ + Sbjct: 3 VSEAWNLYKADKQIQGYSSQTLKVYKVQMSLLIKYFGDIKITDITTESIKLYLGEVAAEL 62 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 SS + ++ LFKWA ++YV++NP +++ PK ++ + T+E+++ + + Sbjct: 63 KASSLCHRIRFIKSLFKWAQEEKYVSVNPVSTIKEPKPESRIPKFLTEEEIELLREAC-K 121 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELPDGFMKLLAM 247 + + FEF+ +G R + + + I K V L Sbjct: 122 TTFEKALFEFMYSTGCRIGEVVKLDRHSINMAEQSVIVFGKGKKEREVYFNTRCSIWLKR 181 Query: 248 TPIGKETFFI-----NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 + +M+ Q K + +AG+NK H +R AT + Sbjct: 182 YLEERYDDQQALFVTIRAPHRMSIAQMRYVIKQISKRAGINKCIHPHQLRHSYATTLINN 241 Query: 301 GATAHELMATYGWKTVDQAETYT 323 GA + G + + Y Sbjct: 242 GAPLEVIQNLMGHEKSETTRVYA 264 >gi|83954474|ref|ZP_00963185.1| tyrosine recombinase [Sulfitobacter sp. NAS-14.1] gi|83840758|gb|EAP79929.1| tyrosine recombinase [Sulfitobacter sp. NAS-14.1] Length = 315 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 42/290 (14%), Positives = 82/290 (28%), Gaps = 29/290 (10%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSG 122 + + + A N+ +++ + G KIT +R+ Sbjct: 14 RDALQSWLDHQRALKGAAENTITAYQGDLVDFLAFMTLHKGDSQGLGALSKITISDMRAW 73 Query: 123 VESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW----- 174 + + P S + L++++ ++W +E LS PK + RP Sbjct: 74 MAQTRSGDVGPRSMARKLSAVKAFYRWLAEREGFEPTAVLSTRSPKFPKKLPRPLAIDAA 133 Query: 175 --TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 + ++ ++ L GLR S++ K G Sbjct: 134 QAMIDSVEMQSRHAWVAARDVAVLTLLWGCGLRISEALGLKGADAPLPEVLRIIGKGGKE 193 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGVNK- 284 V + + + + A S + G+ Sbjct: 194 RVVPVLPAARDAVEAYLRVCPFGKERDAPLFRAVRGGPLAARAISQVMADARMQLGLPAS 253 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 + H +R AT DAG + G ++ + YT D RL Sbjct: 254 ATPHALRHSFATHLLDAGGDLRAIQELLGHASLSTTQAYT-AVDTARLMD 302 >gi|261343068|ref|ZP_05970926.1| tyrosine recombinase XerC [Enterobacter cancerogenus ATCC 35316] gi|288314633|gb|EFC53571.1| tyrosine recombinase XerC [Enterobacter cancerogenus ATCC 35316] Length = 300 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 44/278 (15%), Positives = 96/278 (34%), Gaps = 21/278 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGV---ESRK 127 ++ + + L+ + ++++ D QI + G +++ +R V +K Sbjct: 10 VTRFLRYLGVERQLSPVTLLNYQRQLDAIMQIADEIGLKSWQQCDAATVRGFVVRSRKKK 69 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +P+S L+++R F W V Q + NP + PK + +D+ + Sbjct: 70 LSPASLALRLSALRSFFDWLVSQGVLKANPAKGIATPKAPRHLPKNIDVDDVNRLLDIDL 129 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243 + R E + +GLR S+ ++HL + K + + + Sbjct: 130 NDPLAVRDRAMLEVMYGAGLRLSELVNLDLKHLDLESGEVWVMGKGSKERRLPIGRNAVS 189 Query: 244 LLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 + + F + ++++A F K G+ + H +R A Sbjct: 190 WIEHWLDLRGLFGAEENALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFA 249 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 T ++ + G + + YT D L Sbjct: 250 THMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 286 >gi|261364728|ref|ZP_05977611.1| tyrosine recombinase XerD [Neisseria mucosa ATCC 25996] gi|288567026|gb|EFC88586.1| tyrosine recombinase XerD [Neisseria mucosa ATCC 25996] Length = 291 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 46/275 (16%), Positives = 100/275 (36%), Gaps = 19/275 (6%) Query: 72 KWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKH 128 LI + +S L+ N+ + ++I + G + + + V + Sbjct: 3 DELIDKLLESLWLQDRLSHNTLQGYRRDLEKIAARLEEGGYTWLNAEVADLADAVYAADE 62 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-- 186 SS + L++ + L+ W E NP ++ PK+ + T+ +++ + Sbjct: 63 KHSSQARALSACKRLYAWLEETERRTDNPTRFLKAPKQTQKLPTLITEAQIEKLLAAPDT 122 Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-----------TQKTGTII 233 G + + E + +GLR +++ + + L N I+ + Sbjct: 123 ETPHGLRDKALLEVMYATGLRVTEAVKLQLGDLDLNRGCIRTIGKGDKLRIVPMGEEAVY 182 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKF 292 VE + L + + F++ + ++ + K A AG+ S HG+R Sbjct: 183 WVERYCAESRPLLLKNKICDEVFVSQKRSGISRQLAWMIVKNYAETAGITSLSPHGLRHA 242 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 AT + G + G ++ + YT A+ Sbjct: 243 FATHLVNHGVDLRAVQLMLGHANINTTQIYTHVAN 277 >gi|116491053|ref|YP_810597.1| tyrosine recombinase XerC subunit [Oenococcus oeni PSU-1] gi|118586889|ref|ZP_01544323.1| integrase/recombinase [Oenococcus oeni ATCC BAA-1163] gi|290890534|ref|ZP_06553609.1| hypothetical protein AWRIB429_0999 [Oenococcus oeni AWRIB429] gi|116091778|gb|ABJ56932.1| tyrosine recombinase XerC subunit [Oenococcus oeni PSU-1] gi|118432721|gb|EAV39453.1| integrase/recombinase [Oenococcus oeni ATCC BAA-1163] gi|290479930|gb|EFD88579.1| hypothetical protein AWRIB429_0999 [Oenococcus oeni AWRIB429] Length = 307 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 34/275 (12%), Positives = 82/275 (29%), Gaps = 28/275 (10%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVE---SRKH 128 EY ++ + + ++ + + G D+ I +R + RK Sbjct: 12 EEYLQAE--RQYSTLTLKAYREDIGEFVNFFSQNGGFKDFSAIDRFDVRIYLNNLYERKL 69 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--- 185 +S + ++S+R + + + NP ++E + ++ ++ Sbjct: 70 AKTSIARKISSLRSFYHFLIENSLAKKNPFANIEFRSSNKKLPEFLYPAEVIEYLRAAAD 129 Query: 186 --WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF-- 241 + + E L +G+R + + N + G + Sbjct: 130 PQNDQYLRNSALIELLYATGMRIFEITNLTFSQIDFNSQIVDITGKGKKQRIIPFGKPAL 189 Query: 242 ---MKLLAMTPIGKETFFINNDKQKMNATQFS-------IWFKAKATKAGV--NKSAHGV 289 + L + F + +N K + ++ + N H + Sbjct: 190 ASLKQYLPWREKTMQKFSEKHSYIFINTRGRQLTETGAEYILKQVSKRSKLTANIHPHML 249 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT + GA + G ++ + YT Sbjct: 250 RHSFATHLLNNGADIRTVQELLGHASLSTTQIYTH 284 >gi|266621718|ref|ZP_06114653.1| integrase/recombinase XerD [Clostridium hathewayi DSM 13479] gi|288866619|gb|EFC98917.1| integrase/recombinase XerD [Clostridium hathewayi DSM 13479] Length = 295 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 47/271 (17%), Positives = 92/271 (33%), Gaps = 23/271 (8%) Query: 75 ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTP 130 I+E+ K + N+ +S+ Q+ G D K+T + S V + Sbjct: 5 INEFVKYLREVKKTSKNTEVSYHRDLLQMASYLEEQGITDVEKVTKTSLNSYVLHLEKEG 64 Query: 131 S---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + + L SM+ F + + + +P ++ PK + + T E++ + Sbjct: 65 RATTTISRTLASMKAFFHYEYGEGRIRRDPAELIKAPKIEKKAPTILTVEEVNSLLEQPT 124 Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 S + + E L +G+R S+ V+ + + I + + + Sbjct: 125 GDSPKELRDKAMLELLYATGIRVSELIHLKVEDMNLAVGFITCRDEHKERMIPFGKVARQ 184 Query: 244 LLAMTP----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRK 291 + E F N + M+ F K KAG+ + + H +R Sbjct: 185 AMVNYMESGRASLLKGQESEWLFTNCSGRPMSRQGFWKIIKYYGEKAGIQADITPHTLRH 244 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETY 322 A GA H + A G + + Y Sbjct: 245 SFAAHLLGNGADIHAVQAMMGHSDMATTQMY 275 >gi|254508894|ref|ZP_05121003.1| integrase [Vibrio parahaemolyticus 16] gi|219548208|gb|EED25224.1| integrase [Vibrio parahaemolyticus 16] Length = 391 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 48/341 (14%), Positives = 98/341 (28%), Gaps = 36/341 (10%) Query: 20 KIIYYFRKGHGRR---IRLPYPHESTFIPAYMSALTG--------STPKREYINSPRKKP 68 K +Y+R +R I G T + E + ++ Sbjct: 41 KYYFYYRLNGKQRNYLIGSADSMTPAQARDLAKEKAGLVASGVDVQTQRAEERKAEVRRS 100 Query: 69 TTLKWLISEYRKSAHWGSLAVNS-RISFESYFDQIIRKSGDFDYRKITTKHIRSG---VE 124 TL + E+ K + + + + S++S + D I I+ Sbjct: 101 LTLGKYLEEHYKDYLFA-MNPKTAKQSYQSIANTFA-FLADKPLEDIKAWDIQQWVTDKR 158 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 P++ ++ AV E++ + SV+ K IR ++ + S Sbjct: 159 KLGRAPATIEYTFNRLKAALNRAVEWEFIESHNLSSVKIAKEDNTRIRYLSELEEAALLS 218 Query: 185 ---------FWSEGSQPRLAFEFLL-----YSGLRCSDSCRAGVQHLQNNIFSIK----T 226 S F L ++G+R + + + + Sbjct: 219 ALAAREAQLCEDNDSHQYADFFTPLITLAMHTGMRKGEMLTLRWESVSFENRYLTILSEN 278 Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKS 285 K+ T+ + D +L+ + + F ++ AG+ N Sbjct: 279 AKSKKKRTIPMNDTVFNMLSQWRAQNLNEEYVFVHEGKRVSFFQYPWQNLLKAAGISNFR 338 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 H +R A+ AG + + G + Y A Sbjct: 339 FHDLRHHFASKLVMAGVDLNVVRELLGHADLKMTLRYAHLA 379 >gi|218131354|ref|ZP_03460158.1| hypothetical protein BACEGG_02969 [Bacteroides eggerthii DSM 20697] gi|217986286|gb|EEC52623.1| hypothetical protein BACEGG_02969 [Bacteroides eggerthii DSM 20697] Length = 294 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 42/276 (15%), Positives = 93/276 (33%), Gaps = 24/276 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSGV---ES 125 L + + + + + +++ ++ + GD + IR + Sbjct: 3 LTDSFLDYLLYERNYSKGTVRYYQADILELQKFGEELLGDLTPSDVDAGLIREWITSLMD 62 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 R P++ + L+S+R +K+ +R+ VA +P + PK+K + D+ + Sbjct: 63 RGCAPNTVNRKLSSVRSYYKYLLRKGMVAADPLQKITGPKKKKPLPVFLREGDVNRLLDD 122 Query: 186 W-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPD 239 EG + RL E +G+R S+ + + + T K + + Sbjct: 123 VDFGEGFEGCRDRLIIEMFYATGMRLSELIGLDDKDIDFSASLIKVTGKRNKQRLLPFDE 182 Query: 240 GFMKLLAMTPIGKET---FFINNDKQKMNATQFSIWFKAKATKAGV-------NKSAHGV 289 + + + + + + A K + +S H + Sbjct: 183 ELRCSMQEYVNVRNQALPVRSDAFFIRKTGERLNRSIVAYIVKRNLSKVVTVKKRSPHVL 242 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 R AT + GA + G +++ E YT Sbjct: 243 RHTFATAMLNNGADLGSIKELLGHESLATTEVYTHT 278 >gi|237721804|ref|ZP_04552285.1| integrase [Bacteroides sp. 2_2_4] gi|299144803|ref|ZP_07037871.1| tyrosine recombinase XerD [Bacteroides sp. 3_1_23] gi|229448673|gb|EEO54464.1| integrase [Bacteroides sp. 2_2_4] gi|298515294|gb|EFI39175.1| tyrosine recombinase XerD [Bacteroides sp. 3_1_23] Length = 319 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 53/299 (17%), Positives = 104/299 (34%), Gaps = 29/299 (9%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG-------DFDYRKITTKHIRSGVES 125 +I +Y++ SL++N+ ++ + D+++ D + +G+ Sbjct: 16 IIRKYQQYLKLEKSLSLNTLDAYLTDLDKLMSFLTLEGINVLDVCLSDLQR--FAAGLHD 73 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 P S + L+ ++ F++ + + Y+ +P +E PK + T E++ + S Sbjct: 74 IGIHPRSQARILSGIKSFFRFLILENYLEADPSELLEGPKIGFKLPEVLTVEEIDRIISA 133 Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDG 240 EG + R E L GLR S+ + L + F K V + Sbjct: 134 VDRSKAEGQRNRAILETLYSCGLRVSELITLKLSDLYFDEGFIKVEGKGSKQRLVPISPR 193 Query: 241 FMKLLAMTPIGKETFFINNDKQKM-----------NATQFSIWFKAKATKAGVNK--SAH 287 + + + + + + + K A KAG+ K S H Sbjct: 194 AINEIKLYIPDRNQIEVKKGHEDFVFVSQRRGKGLSRIMIFHMIKELAEKAGITKNISPH 253 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346 R AT + GA + G +++ E YT DR L + + Sbjct: 254 TFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTH-IDRNMLRSEIIEHHPRNIKYR 311 >gi|34499125|ref|NP_903340.1| integrase/recombinase [Chromobacterium violaceum ATCC 12472] gi|34104976|gb|AAQ61332.1| integrase/recombinase [Chromobacterium violaceum ATCC 12472] Length = 295 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 44/298 (14%), Positives = 94/298 (31%), Gaps = 28/298 (9%) Query: 66 KKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 ++ + + + + L+ N+ ++ ++ + + + T + + Sbjct: 3 SDKDSIDAFLDQLWLED----GLSQNTLAAYRRDLSKLAARLAERGVS-LETATLADLEQ 57 Query: 125 SR-----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + P++ + +++R ++ R +P + PK+ + ++ D+ Sbjct: 58 ALLAGVASEKPATRARLTSALRRYYQHLSRNGVRQDDPSARLASPKQGLRLPKSMSEMDV 117 Query: 180 QQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIIT 234 + G + R E L SGLR S+ + L + K Sbjct: 118 EALLDAPDVETPLGLRDRAMLEVLYASGLRVSELVGMTLNQLNLLDGVVKTMGKGSKERL 177 Query: 235 VELPDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-N 283 V L + L + F+ K M A + G+ Sbjct: 178 VPLGEIAQDWLLRYLKEARPLLLAGQPCDAVFVTQRKAGMTRQMAWHLITQYAGRQGLAK 237 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 S H +R AT + GA + G + + YT A R RL ++R Sbjct: 238 VSPHVLRHAFATHLVNHGADLRVVQLLLGHADISTTQIYTHVA-RERLKQLHARHHPR 294 >gi|190570559|ref|YP_001974917.1| site-specific recombinase, phage integrase family [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|190356831|emb|CAQ54200.1| site-specific recombinase, phage integrase family [Wolbachia endosymbiont of Culex quinquefasciatus Pel] Length = 306 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 40/282 (14%), Positives = 82/282 (29%), Gaps = 29/282 (10%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRS 121 L +I ++ + S + N+ S+ +I K++ +RS Sbjct: 3 LGSIIEKWYDWLKYNRSYSPNTLESYMRDLKDLISFLNTHIGEEVNVGSLEKLSIPELRS 62 Query: 122 GVESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 SR +A + L+ +R FK+ + S+ RP ++ + + + Sbjct: 63 WFTSRYARGVNARSNTRALSVIRNFFKYIKNNYEINNEAVFSLSRPIQRRTLPKALSISN 122 Query: 179 MQQFKSFW--------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230 ++ + L +GLR +++ V + N T K Sbjct: 123 IETLLKEMKLPDLGEPWVVKREIAIVVLLYGTGLRITEALNLKVSDISNESLI-VTGKGD 181 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQ------KMNATQFSIWFKAKATKAGVN- 283 V + K + F K+ T + + + Sbjct: 182 KQRQVFILPVVKKCIQKYIKACPHFDEAGHLFVGVRGKKLGRTYVANRLQKIRRFLNLPE 241 Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 S H R AT + G +++ + YT Sbjct: 242 ILSPHAFRHSFATHLLQEDIDIRSIQQLLGHSSLETTQVYTH 283 >gi|163741192|ref|ZP_02148584.1| tyrosine recombinase XerD [Phaeobacter gallaeciensis 2.10] gi|161385545|gb|EDQ09922.1| tyrosine recombinase XerD [Phaeobacter gallaeciensis 2.10] Length = 337 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 45/309 (14%), Positives = 98/309 (31%), Gaps = 42/309 (13%) Query: 73 WLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSG---VESR 126 I+ + + A N+ +++ + G + + I + ++ Sbjct: 17 QWIATFLDAQAADLGAARNTLLAYGRDLKDVASWLGHKNLDFGSASRDDIEAYLIACDAE 76 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 ++ + L++++ ++++A + + + NP + ++ P R+ + ++ + Sbjct: 77 GLARATRARRLSAIKQIYRFAFDEGWRSDNPAIQIKGPGRQKALPKTLEVIEVDRLLDAA 136 Query: 187 SEGSQPR-------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238 + + E L +G+R S+ V + + + K G V L Sbjct: 137 RQSGRNLSDRLRNTCMMELLYATGMRVSELVGLPVAAARGDPRMLLVLGKGGKERMVPLS 196 Query: 239 DGFMKLLAMT----------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 LA + F + +F + K A G+ Sbjct: 197 PPARDALAAWLTTRDAAEEAAVAKGAAPSRFLFPSRGKSGHLTRHRFYLLIKEFAVAGGL 256 Query: 283 N---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 S H +R AT GA + A G + E YT D R+ Sbjct: 257 PPEAVSPHTLRHAFATHLLTNGADLRAIQALLGHADIATTEIYTHVLD---------ARL 307 Query: 340 SSVVDSDDP 348 S +V P Sbjct: 308 SELVLEHHP 316 >gi|144898915|emb|CAM75779.1| Tyrosine recombinase xerC [Magnetospirillum gryphiswaldense MSR-1] Length = 314 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 41/294 (13%), Positives = 84/294 (28%), Gaps = 29/294 (9%) Query: 66 KKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS-----GDFDYR---KITT 116 L I ++R + ++ + G+ D ++ Sbjct: 9 AARPDLAAAIGQWRDWLAGEKRSSPHTLDGYARDVSAFTTFLLGHLGGEADLAALGQLQP 68 Query: 117 KHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 R+ + +R+ SS + ++S+R FK+ R + V +V+ P+ +P Sbjct: 69 ADFRAFLAARQADGLGRSSVARLMSSLRGFFKYLDRHDLVHNPAINAVKSPRPPKSLPKP 128 Query: 174 WTKEDMQQFK-------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226 ED + ++ F L GLR ++ + + T Sbjct: 129 LAAEDAIEALSTAGELHDEPWLAARDVALFTLLYGCGLRLGEALALQKRDIPAGDAMTIT 188 Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-------FSIWFKAKATK 279 K V + + + + + A + Sbjct: 189 GKGRKQRLVPVLPIVRQAIGEYVTLCPHPLAADGPLFVGARGGLLNPGVVQRQMRRLRAL 248 Query: 280 AGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 G+ + H +R AT G + G ++ + YT D RL Sbjct: 249 MGLPDTATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQRYT-QVDEARL 301 >gi|189459539|ref|ZP_03008324.1| hypothetical protein BACCOP_00163 [Bacteroides coprocola DSM 17136] gi|189465731|ref|ZP_03014516.1| hypothetical protein BACINT_02092 [Bacteroides intestinalis DSM 17393] gi|189433791|gb|EDV02776.1| hypothetical protein BACCOP_00163 [Bacteroides coprocola DSM 17136] gi|189433995|gb|EDV02980.1| hypothetical protein BACINT_02092 [Bacteroides intestinalis DSM 17393] Length = 372 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 49/318 (15%), Positives = 95/318 (29%), Gaps = 30/318 (9%) Query: 28 GHGRRIRLPYPHESTFIPAYMS-------ALTGSTPKREYINSPRKKPTTLKWLISEYRK 80 G + + F Y+ A+ + P++E P Y + Sbjct: 47 GGRAYLPAEDFVLAEFFDRYVKMAFIDYSAIKETAPRKEEDKRPPLPEG--------YLE 98 Query: 81 SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQF 136 + ++ + SYF + +T I + + + Q Sbjct: 99 KLQQVRYSDHTVRVYTSYFRDFQQHFEGRKIETVTPGEINDYLLYLIHEKNISSCQQNQR 158 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196 + +++ + + C V R KR+ +KE++++ + F Sbjct: 159 INAIK----FYYEKVLGQERRCYKVNRAKREKTLPDVLSKEEIKKILDATVTDLRFFCMF 214 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254 L +GLR S+ + + ++ K L MK L + Sbjct: 215 SILYSAGLRISELLELKPGDINESRSLIRVRQGKGKKDRYTLLSKPLMKKLTEYNRLYKP 274 Query: 255 FFINNDKQK---MNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMA 309 + + + S KA A +AG+ K H +R AT + G + Sbjct: 275 KVWLFEHRPGEPFTESIVSKRLKAAAREAGITKRIYPHLLRHSFATHLLEQGTDIKIVKE 334 Query: 310 TYGWKTVDQAETYTKGAD 327 G + E Y AD Sbjct: 335 LMGHNNIKTTERYVHIAD 352 >gi|114320644|ref|YP_742327.1| tyrosine recombinase XerD [Alkalilimnicola ehrlichii MLHE-1] gi|114227038|gb|ABI56837.1| tyrosine recombinase XerD [Alkalilimnicola ehrlichii MLHE-1] Length = 304 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 50/292 (17%), Positives = 96/292 (32%), Gaps = 24/292 (8%) Query: 61 INSPRKKPTTLKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTK 117 + T L L + + L + ++ S R G Sbjct: 2 TAATNSAETPLAEL-EAFLDALWMEQGLGERTLSAYRSDLLGFQRWLGGQGGSLLSARRD 60 Query: 118 HIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 + + + R P S + LTS+R +++ +R+ VA +P VE P+ Sbjct: 61 QVLAYLGGRLGQGAKPRSVARLLTSLRRFYRYQLREGRVAEDPTRDVESPRLGRPLPGGL 120 Query: 175 TKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230 ++ ++++ + G + R E L SGLR S+ + L + ++ G Sbjct: 121 SESEVERLLAAPDPETPLGQRDRCMLEVLYASGLRVSELVGLSLSELSLSQGLVRVVGKG 180 Query: 231 -TIITVELPDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATK 279 V L + ++ + + F+ + + F K A Sbjct: 181 GRERLVPLGETALEQVQQWLREGRPALLGRRVSDAVFVTGRGEGLTRQAFWYRVKKHARS 240 Query: 280 AGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 G+ S H +R AT + GA + G + + YT A + Sbjct: 241 VGITRPISPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARQR 292 >gi|42520593|ref|NP_966508.1| phage integrase family site specific recombinase [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410332|gb|AAS14442.1| site-specific recombinase, phage integrase family [Wolbachia endosymbiont of Drosophila melanogaster] Length = 309 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 45/285 (15%), Positives = 89/285 (31%), Gaps = 32/285 (11%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-----GDFD---YRKITTKHIRS 121 L +I ++ + S + N+ S+ +I G+ + K++ +RS Sbjct: 3 LGSIIEKWYEWLRRNRSYSPNTLESYMRDLKDLISFLNTHIGGEVNVGTLEKLSVPELRS 62 Query: 122 GVESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + SR +A + L+ +R FK+ + S+ RP ++ + + D Sbjct: 63 WLTSRYARGVNARSNTRALSVIRNFFKYIKNNHNIDNEAVFSLSRPIQRRTLPKALSIPD 122 Query: 179 MQQFKSFW--------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230 ++ + L +GLR S++ V + N T K Sbjct: 123 IKTLLKEMKLSDLGESWVVKREIAIIVLLYSTGLRISEALNLRVSDINNESLI-VTGKGD 181 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWFKAKATKAG 281 V + K + NN+ Q K+ T + + Sbjct: 182 KQRQVFILPVVKKCIQEYVKACPYLGTNNETQYLFLGVRGKKLGRTYVANRLQKIRRMLN 241 Query: 282 VN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + S H R AT + G +++ + YT Sbjct: 242 LPEILSPHAFRHSFATHLLQEDIDIRSIQQLLGHSSLETTQIYTH 286 >gi|300855279|ref|YP_003780263.1| putative site-specific recombinase [Clostridium ljungdahlii DSM 13528] gi|300435394|gb|ADK15161.1| predicted site-specific recombinase [Clostridium ljungdahlii DSM 13528] Length = 328 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 41/293 (13%), Positives = 92/293 (31%), Gaps = 44/293 (15%) Query: 85 GSLAVNSRISFESYFDQIIRK-------------SGDFDYRKITTKHIRSGV-------- 123 + N++ ++ R + D I T IR Sbjct: 28 RGKSKNTQDGYQVDLTMFFRFLKIYRGIVKENYEFENIDISDINTDFIRKITLSDLYAFI 87 Query: 124 ----ESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 R + + + + ++ FK+ + + + NP L +E PK + ++ Sbjct: 88 SFAENYRNNGNYARARKVACLKSFFKYLFSKAKLIDTNPALELESPKIDKRNPIYLSLKE 147 Query: 179 MQQFKSFWS--EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 + + + F L G+R S+ C + ++ + ++ + T+ Sbjct: 148 SKILLNSIDGKFKERDYCIITFFLNCGMRLSELCSINISKIKEDTLTVVGKGN-KERTIY 206 Query: 237 LPDGFMKLLAMTPIGKETFFINN----------DKQKMNATQFSIWFKAKATKAGVN--- 283 L + L + + + ++N + K AG++ Sbjct: 207 LNRACLTALNNYLEIRNKDYDKIKDKDALFLSKNHTRINKRSVEMMLKKYLKNAGLDSNK 266 Query: 284 KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD-RIRLGIK 334 + H +R +AT+ G L G + V + YT D ++R + Sbjct: 267 YTPHKLRHTAATLMYKYGNVDIRSLQKILGHENVSTTQIYTHVDDEQLREAVN 319 >gi|84517237|ref|ZP_01004592.1| Phage integrase [Loktanella vestfoldensis SKA53] gi|84508912|gb|EAQ05374.1| Phage integrase [Loktanella vestfoldensis SKA53] Length = 401 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 46/345 (13%), Positives = 100/345 (28%), Gaps = 23/345 (6%) Query: 13 KERTRHGKIIY-YF--RKGHGRRIRLPYPHESTFIPAYMSALTGSTPK-----REYINSP 64 + R G+ Y + + R I+L + T A + Sbjct: 36 EVRISGGRTYYLRYSDDRSKTRYIKLADAGDVTLPQARTLCERMRNKIAMGVDPLKERAG 95 Query: 65 RKKPTTLKW-LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 +K T + + Y + + + + +I G +ITT+ + + Sbjct: 96 KKLVPTFEAFAWNSYMPFSQANKRSWKTDETLIRT--HLIPTFGKKHLDEITTEDVLNMQ 153 Query: 124 E---SRKHTPSSAIQFLTSMRVLFKWAVRQEYV-----AINPCLSVERPKRKTEGIRPWT 175 + P S + L +R +F A R + + + + K E Sbjct: 154 QAGLKAGAAPGSVNRRLILLRYMFNTAWRDWKIAGVKENPTHGVRLLKENNKKERYVRAD 213 Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 + + S+ + + FL+ +G R ++ A + + T + Sbjct: 214 EMARLYAEICSSQNTMLKHIVAFLVLTGARRNEVLHATWHDINMTTGKWRIPDTKSGYAR 273 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ---FSIWFKAKATKAGVN-KSAHGVRK 291 LP + + + + + KAG+ H +R Sbjct: 274 HLPLNDGAMAVLHQMRGVSRSHFIFGNPKTGKAYVHIWYAWNTARKKAGLPDVRMHDLRH 333 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 A++ + G + +E+ G + + Y L N Sbjct: 334 TFASLLINNGRSIYEVQKLLGHTQIKTTQRYAHLTQETLLDASNI 378 >gi|45442956|ref|NP_994495.1| site-specific tyrosine recombinase XerC [Yersinia pestis biovar Microtus str. 91001] gi|108806177|ref|YP_650093.1| site-specific tyrosine recombinase XerC [Yersinia pestis Antiqua] gi|108810287|ref|YP_646054.1| site-specific tyrosine recombinase XerC [Yersinia pestis Nepal516] gi|145600710|ref|YP_001164786.1| site-specific tyrosine recombinase XerC [Yersinia pestis Pestoides F] gi|153948314|ref|YP_001399204.1| site-specific tyrosine recombinase XerC [Yersinia pseudotuberculosis IP 31758] gi|153997101|ref|ZP_02022234.1| putative integrase/recombinase [Yersinia pestis CA88-4125] gi|161484900|ref|NP_667725.2| site-specific tyrosine recombinase XerC [Yersinia pestis KIM 10] gi|162418493|ref|YP_001605136.1| site-specific tyrosine recombinase XerC [Yersinia pestis Angola] gi|165926246|ref|ZP_02222078.1| tyrosine recombinase XerC [Yersinia pestis biovar Orientalis str. F1991016] gi|165939104|ref|ZP_02227655.1| tyrosine recombinase XerC [Yersinia pestis biovar Orientalis str. IP275] gi|166011640|ref|ZP_02232538.1| tyrosine recombinase XerC [Yersinia pestis biovar Antiqua str. E1979001] gi|166213553|ref|ZP_02239588.1| tyrosine recombinase XerC [Yersinia pestis biovar Antiqua str. B42003004] gi|167401874|ref|ZP_02307362.1| tyrosine recombinase XerC [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167420989|ref|ZP_02312742.1| tyrosine recombinase XerC [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426292|ref|ZP_02318045.1| tyrosine recombinase XerC [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167468815|ref|ZP_02333519.1| site-specific tyrosine recombinase XerC [Yersinia pestis FV-1] gi|170026220|ref|YP_001722725.1| site-specific tyrosine recombinase XerC [Yersinia pseudotuberculosis YPIII] gi|218930846|ref|YP_002348721.1| site-specific tyrosine recombinase XerC [Yersinia pestis CO92] gi|229837173|ref|ZP_04457338.1| site-specific tyrosine recombinase [Yersinia pestis Pestoides A] gi|229839533|ref|ZP_04459692.1| site-specific tyrosine recombinase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229900096|ref|ZP_04515233.1| site-specific tyrosine recombinase [Yersinia pestis biovar Orientalis str. India 195] gi|229900458|ref|ZP_04515587.1| site-specific tyrosine recombinase [Yersinia pestis Nepal516] gi|270488812|ref|ZP_06205886.1| tyrosine recombinase XerC [Yersinia pestis KIM D27] gi|294505507|ref|YP_003569569.1| tyrosine recombinase [Yersinia pestis Z176003] gi|34222851|sp|Q8D1K0|XERC_YERPE RecName: Full=Tyrosine recombinase xerC gi|45437823|gb|AAS63372.1| putative integrase/recombinase [Yersinia pestis biovar Microtus str. 91001] gi|108773935|gb|ABG16454.1| tyrosine recombinase XerC subunit [Yersinia pestis Nepal516] gi|108778090|gb|ABG12148.1| tyrosine recombinase XerC subunit [Yersinia pestis Antiqua] gi|115349457|emb|CAL22430.1| putative integrase/recombinase [Yersinia pestis CO92] gi|145212406|gb|ABP41813.1| tyrosine recombinase XerC subunit [Yersinia pestis Pestoides F] gi|149289407|gb|EDM39485.1| putative integrase/recombinase [Yersinia pestis CA88-4125] gi|152959809|gb|ABS47270.1| tyrosine recombinase XerC [Yersinia pseudotuberculosis IP 31758] gi|162351308|gb|ABX85256.1| tyrosine recombinase XerC [Yersinia pestis Angola] gi|165912877|gb|EDR31503.1| tyrosine recombinase XerC [Yersinia pestis biovar Orientalis str. IP275] gi|165921770|gb|EDR38967.1| tyrosine recombinase XerC [Yersinia pestis biovar Orientalis str. F1991016] gi|165989409|gb|EDR41710.1| tyrosine recombinase XerC [Yersinia pestis biovar Antiqua str. E1979001] gi|166205226|gb|EDR49706.1| tyrosine recombinase XerC [Yersinia pestis biovar Antiqua str. B42003004] gi|166961118|gb|EDR57139.1| tyrosine recombinase XerC [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048767|gb|EDR60175.1| tyrosine recombinase XerC [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054811|gb|EDR64615.1| tyrosine recombinase XerC [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169752754|gb|ACA70272.1| tyrosine recombinase XerC [Yersinia pseudotuberculosis YPIII] gi|229682477|gb|EEO78564.1| site-specific tyrosine recombinase [Yersinia pestis Nepal516] gi|229686876|gb|EEO78955.1| site-specific tyrosine recombinase [Yersinia pestis biovar Orientalis str. India 195] gi|229695899|gb|EEO85946.1| site-specific tyrosine recombinase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706116|gb|EEO92125.1| site-specific tyrosine recombinase [Yersinia pestis Pestoides A] gi|262363573|gb|ACY60294.1| tyrosine recombinase [Yersinia pestis D106004] gi|262367501|gb|ACY64058.1| tyrosine recombinase [Yersinia pestis D182038] gi|270337316|gb|EFA48093.1| tyrosine recombinase XerC [Yersinia pestis KIM D27] gi|294355966|gb|ADE66307.1| tyrosine recombinase [Yersinia pestis Z176003] gi|320013559|gb|ADV97130.1| site-specific tyrosine recombinase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 303 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 46/278 (16%), Positives = 90/278 (32%), Gaps = 21/278 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGVESRKHTP 130 + + + L+ + S+ ++ + G ++ + +RS V K Sbjct: 12 VEAFLRYLSIERQLSPLTVTSYRRQLSALMEIGEQMGLAHWQTLDAAQVRSLVSRSKRAG 71 Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 SS L+++R W V Q + NP V P+ + +++ + S Sbjct: 72 LHASSLALRLSALRSFLNWLVSQGVLPANPAKGVSTPRSGRHLPKNIDVDEVNKLLSIDL 131 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243 + R E + +GLR S+ +H+ + K V L + Sbjct: 132 NDPLAVRDRAMLEVMYGAGLRLSELVGMNCKHVDLASGDVWVMGKGSKERKVPLGKTAVT 191 Query: 244 LLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 L + F+ N ++++A F K GV + H +R A Sbjct: 192 WLQHWLALRELFEPQDDAIFLANTGKRISARNVQKRFAEWGVKQGVSSHIHPHKLRHSFA 251 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 T ++ + G + + YT D L Sbjct: 252 THMLESSGDLRAVQELLGHANLTTTQIYTH-LDFQHLA 288 >gi|291527524|emb|CBK93110.1| Site-specific recombinase XerD [Eubacterium rectale M104/1] Length = 306 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 42/289 (14%), Positives = 89/289 (30%), Gaps = 28/289 (9%) Query: 71 LKWLISEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK-- 127 L+ L Y + L + ++ Q + +ITT + + Sbjct: 4 LQTLTENYLEYCRTQKCLDEKTLKAYRIDLRQFSEEPSLEKIIEITTNDLEDYIARLHQQ 63 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK--------------TEGIRP 173 + P + + + S++ F + +E +AINP ++ R+ Sbjct: 64 YKPKTVKRKIASIKAFFHYLEYKELLAINPFTKIQVHFREPTILPKIIPLHTVEKFLTMI 123 Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--TGT 231 +T+ D + + E L +G+R S+ C + + + SI Sbjct: 124 YTQRDNAKTNYQRRNALRDAAVSELLFATGMRISELCSLKNEDINLHDGSILIYGKGDKE 183 Query: 232 IITVELPDGFMKLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284 D K++ FF N + + ++ + A ++ Sbjct: 184 RRIHIGNDSVSKIIEEYKAEFQTEIRSCNHFFANQNGKPLSDQAVRRMINKYCSLADIDL 243 Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 + H R AT +A + G +++ E YT + Sbjct: 244 HITPHMFRHTFATSLLEADVDIRYIQEMLGHSSINVTEIYTHVTTAKQR 292 >gi|259507532|ref|ZP_05750432.1| tyrosine recombinase XerC [Corynebacterium efficiens YS-314] gi|259164917|gb|EEW49471.1| tyrosine recombinase XerC [Corynebacterium efficiens YS-314] Length = 296 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 38/263 (14%), Positives = 88/263 (33%), Gaps = 19/263 (7%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES---RKHTPSSAIQFLTSMRV 142 + + + S + D + T ++R+ + + ++ + S++ Sbjct: 26 GRSDATVRGYRSDLRHMAATIPD--LTEFTLPNLRAWLGRAVEEGKSRATLARRTASVKS 83 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-----QPRLAFE 197 WAV+ ++ + + PK R + +F + + + E Sbjct: 84 FSTWAVKNGLISGDEAARLVSPKVTRNLPRVLGEVQAGEFMGSAAADTEDEFRRDSAILE 143 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKETFF 256 L +G+R S+ C + + ++ ++ K + L ++ Sbjct: 144 LLYATGMRVSELCGLDLGDVDHHRRMVRVLGKGDKERMIPFGKAAADALEQWLEARDRMA 203 Query: 257 INNDKQ-------KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELM 308 D +++A Q A AG + S H +R +AT D GA ++ Sbjct: 204 KVEDAMFVGVRGGRIDARQIRRIVDRTAQVAGADHLSPHSLRHTAATHLLDGGADLRQVQ 263 Query: 309 ATYGWKTVDQAETYTKGADRIRL 331 G ++ + YT + + L Sbjct: 264 EMLGHSSLQTTQIYTHVSSQRLL 286 >gi|227833151|ref|YP_002834858.1| integrase/recombinase [Corynebacterium aurimucosum ATCC 700975] gi|262182358|ref|ZP_06041779.1| site-specific tyrosine recombinase XerD [Corynebacterium aurimucosum ATCC 700975] gi|227454167|gb|ACP32920.1| integrase/recombinase [Corynebacterium aurimucosum ATCC 700975] Length = 292 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 49/276 (17%), Positives = 94/276 (34%), Gaps = 30/276 (10%) Query: 85 GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTP--SSAIQFLTS 139 + N+ ++ ++ + G D R++T H+ + + + + SSA + L Sbjct: 7 KGASKNTVSNYRRDINRYVDWLAESGITDLRRVTRAHVENYLVFLRESLAQSSASRALIV 66 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED-------MQQFKSFWSEGSQP 192 R L K+A+ + + + V PKR + +D + +S + Sbjct: 67 ARGLHKFALAEGMIEEDVAAEVSPPKRAQALPETLSVQDVEALLNAIPTDESATPIDIRD 126 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ------KTGTIITVELPDGFMKLLA 246 R E L +G R S+ V + + K V L + + Sbjct: 127 RALLEMLYGTGARISEVISLSVDDVTGEGPASVRDILVLSGKGDKQRLVPLGSHAVTAVE 186 Query: 247 MTPIG---------KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSAT 295 + + F+N + ++ K A +A + S H +R AT Sbjct: 187 NYLVRARPVLATGASHSLFLNTRGKALSRQSAWAAIKTAAQRAHLSTKISPHTLRHSFAT 246 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKG-ADRIR 330 + GA + G +V + YT AD +R Sbjct: 247 HLLEGGADVRTVQELLGHSSVTTTQIYTHVTADSLR 282 >gi|15893191|ref|NP_360905.1| site-specific tyrosine recombinase XerC [Rickettsia conorii str. Malish 7] gi|34222950|sp|Q92G55|XERC_RICCN RecName: Full=Tyrosine recombinase xerC gi|15620404|gb|AAL03806.1| integrase/recombinase [Rickettsia conorii str. Malish 7] Length = 305 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 47/287 (16%), Positives = 101/287 (35%), Gaps = 28/287 (9%) Query: 68 PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRS 121 T+++ LI++++K + + ++ IS+ + + I T IR Sbjct: 3 DTSIQALINKWQKYLALQRNYSNHTVISYNNDLKHFLEFMNYYNSELVTINHIKTADIRL 62 Query: 122 GVESRK------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 T SS + L++++ +++ + + + S++ PK+ + + Sbjct: 63 IRSWLAKRNCDNFTASSISRGLSAVKNFYRFLEKTTQLNSHIIFSIKSPKKTKLLPKALS 122 Query: 176 KEDMQQFKSFW-------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228 ++D+ + + + SGLR S++ HLQN F K Sbjct: 123 EDDVVISLEHIEEYGNVKWVELRNKALLVLIYASGLRISEALSITKLHLQNLEFIRIIGK 182 Query: 229 TGTIITVEL-------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 + ++++L E F +K+ F+ G Sbjct: 183 GSKERIIPWLPIAKNLITQYLEILPYKLGDNEPIFRGKQGKKLQPPVFNRELIKLKHFYG 242 Query: 282 VN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 + +AH R A+ + GA L G K++ + YTK + Sbjct: 243 LPQHLTAHSFRHSFASHLLEHGADLRSLQELLGHKSLSTTQNYTKTS 289 >gi|220933239|ref|YP_002512138.1| tyrosine recombinase XerC [Thioalkalivibrio sp. HL-EbGR7] gi|219994549|gb|ACL71151.1| tyrosine recombinase XerC [Thioalkalivibrio sp. HL-EbGR7] Length = 298 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 38/292 (13%), Positives = 92/292 (31%), Gaps = 22/292 (7%) Query: 74 LISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS- 131 I Y + + ++ ++ ++ GD D+ + IR+ V + Sbjct: 8 WIDRYLRHLREERRYSPHTVENYARDLRRLCEAVGD-DWSSVKVHDIRALVAKEHRQGAG 66 Query: 132 --SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + + L+++R F + +R+ NP L V PK + + + + + Sbjct: 67 SKTLQRLLSAIRGFFNYLIREGVADANPALDVRAPKSGRKLPGVLDVDQVARLLDLPGDE 126 Query: 190 S---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLL 245 + + R E SGLR ++ + + ++ + + + L Sbjct: 127 ALVVRDRAILELFYSSGLRLAELVGLDLVDVDLGDAQLRVTGKGRKARDLPIGRHAVAAL 186 Query: 246 AMTPIGK--------ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSAT 295 + + F+ +++ A A G+++ H +R A+ Sbjct: 187 KAWLPMRAGLAAADEQALFVGQRGRRLGARAVQTRLARHAGLQGLDRRVHPHLLRHSFAS 246 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG--IKNSRRISSVVDS 345 ++ + G + + YT D L + + S Sbjct: 247 HLLESSGDLRAVQELLGHADISTTQVYTH-LDYQHLAKVYDAAHPRARRKPS 297 >gi|218131523|ref|ZP_03460327.1| hypothetical protein BACEGG_03142 [Bacteroides eggerthii DSM 20697] gi|217986455|gb|EEC52792.1| hypothetical protein BACEGG_03142 [Bacteroides eggerthii DSM 20697] Length = 316 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 53/296 (17%), Positives = 101/296 (34%), Gaps = 24/296 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKH-- 128 +I +Y++ SLA N+ ++ + +++ + + +T ++ Sbjct: 16 IIRKYQQYLKLEKSLASNTFDAYMTDLQKLLHFLEGENIEVGNVTPDDLQRFAAGLHDIG 75 Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---- 183 P S + L+ ++ F + +Y+ +P +E PK + T E++ + Sbjct: 76 IHPRSQARILSGIKSFFHFLTVADYLETDPSELLEGPKIGFKIPEVLTVEEIDRIISAVD 135 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFM 242 EG + R E L GLR S+ C + L F K V + + Sbjct: 136 MDKKEGQRNRAILETLYSCGLRVSELCNLKLSDLYFEEGFIKVEGKGSKQRLVPISPRAI 195 Query: 243 KLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 K + ++ F+ ++ K A K G+ K S H R Sbjct: 196 KEIKYWLTDRNLGKIKKGYEDYVFLARWGNNISRIMVFHMIKELAEKTGITKNISPHTFR 255 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346 AT + GA + G +++ E YT DR L + + Sbjct: 256 HSFATHLLEGGANLRAIQCMLGHESIATTEIYTH-IDRNMLRSEIIEHHPRNIKYR 310 >gi|302389546|ref|YP_003825367.1| integrase family protein [Thermosediminibacter oceani DSM 16646] gi|302200174|gb|ADL07744.1| integrase family protein [Thermosediminibacter oceani DSM 16646] Length = 310 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 39/281 (13%), Positives = 79/281 (28%), Gaps = 29/281 (10%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHI----RSGV 123 K+ I ++ + +L+ + +E + D + IT + I Sbjct: 6 FKFAIQDFLDDRKFKNLSPETLKGYEITLKEFHNYCTDNNLIDTSDITPRVIKNYLIHCQ 65 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK----------RKTEGIRP 173 R + P + + ++++ F + E + P + + Sbjct: 66 NERSNNPVTLNHKIRNLKIFFNYLEEIEIYDEKNNPAKPIPYLKEDVKIEVFTDYQIRQM 125 Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-I 232 T + + + LL +G+R + +H+ + Sbjct: 126 LTYYRRLKTRDKAFWAYRDYTIIVTLLGTGIRLGELVNLQWRHIDFVNQVMTIFGKKRIQ 185 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQ--------KMNATQFSIWFKAKATKAG--- 281 ++ L + +K LA + E +F + M A FK Sbjct: 186 RSIPLTEKLVKELAEFKVFCERYFGKLNDYVFVNSKNEPMTADAVKCMFKRLKEIMNFRD 245 Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 V SAH R A G L G ++ Y Sbjct: 246 VRLSAHTFRHTFAHRFLMNGGDVFSLQKILGHSKIEMTMRY 286 >gi|189425748|ref|YP_001952925.1| tyrosine recombinase XerD [Geobacter lovleyi SZ] gi|189422007|gb|ACD96405.1| tyrosine recombinase XerD [Geobacter lovleyi SZ] Length = 295 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 49/284 (17%), Positives = 88/284 (30%), Gaps = 26/284 (9%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSG---VE 124 L + L+ N+R ++ + + + I I Sbjct: 4 FLDLFLAWLT--VEKGLSANTRSAYAADLGRYLDYLERLQRDTPDSIQPSDIAEFLGKER 61 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 R P S + L+++R+L ++ + + Y NP +E P+ + + ++ + Sbjct: 62 ERGLAPRSRARLLSAIRMLHRFLLIERYAVTNPSAIIEAPRPLKKLPTFLSMAEVDRLLG 121 Query: 185 FWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPD 239 E + R E L +GLR S+ + + I + K + + Sbjct: 122 ATHGSRSEDIRDRAMLELLYATGLRVSELVNLKQREVNLEIGYLMTIGKGNKERLIPIGA 181 Query: 240 GFMKLLAMTPIGKETFFINNDKQK----------MNATQFSIWFKAKATKAGVN--KSAH 287 +A + Q M F K +A AGV S H Sbjct: 182 AACHRVADYLEQVRSKQDPEGLQPQLFLSRLGEAMTRQAFWNIIKKRALLAGVRTSISPH 241 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +R AT GA + G + + YT R RL Sbjct: 242 TLRHSFATHLLANGADLRSVQIMLGHADLSTTQIYTHVT-RERL 284 >gi|157368433|ref|YP_001476422.1| site-specific tyrosine recombinase XerC [Serratia proteamaculans 568] gi|157320197|gb|ABV39294.1| tyrosine recombinase XerC [Serratia proteamaculans 568] Length = 303 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 42/283 (14%), Positives = 93/283 (32%), Gaps = 21/283 (7%) Query: 70 TLKWLISEYRKSAHW-GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVES 125 +L+ + + + L+ +++S+ + ++ G ++ + +R Sbjct: 7 SLQQPVDAFLRYLKVERQLSPLTQLSYSRQLQALMALAQEIGVTEWPLLDAAKVRQLAAR 66 Query: 126 RKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 K SS L+++R W V Q + NP + P+ + ++M Q Sbjct: 67 SKRAGLQSSSLALRLSALRSFLDWQVSQGMLIANPAKGIRTPRSGRHLPKNIDVDEMNQL 126 Query: 183 KSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELP 238 + + R E + +GLR S+ +H+ K + + Sbjct: 127 LNIDLNDPLAVRDRAMLEVMYGAGLRLSELVGLDCRHVDLAAGEIWVLGKGSKERKLPVG 186 Query: 239 DGFMKLLAMTPIGKE-------TFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289 + L ++ F++N ++++ F K GV + H + Sbjct: 187 RTAVTWLEHWLAMRDLFGPSDDAMFLSNQGKRISTRNVQKRFAEWGVKQGVNSHIHPHKL 246 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 R AT ++ + G + + YT D L Sbjct: 247 RHSFATHMLESSGDLRAVQELLGHANLTTTQIYTH-LDFQHLA 288 >gi|282859943|ref|ZP_06269031.1| tyrosine recombinase XerD [Prevotella bivia JCVIHMP010] gi|282587346|gb|EFB92563.1| tyrosine recombinase XerD [Prevotella bivia JCVIHMP010] Length = 310 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 47/272 (17%), Positives = 91/272 (33%), Gaps = 24/272 (8%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVESRKHT 129 Y K + N+ ++ +++ + K H + + Sbjct: 15 FRRYLKLE--KGHSENTVDAYMHDIEKLSSYLKAEKVDVLDVKLDDLEHFAASISEIGIG 72 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--- 186 S + L+ +R +++ V Y+ +P +E PK+ + ++ Sbjct: 73 ARSLARILSGVRHFYRFLVLDGYLEADPTELLESPKQPQHLPEVLSTAEVDIILQSIDLS 132 Query: 187 -SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKL 244 EG + + E L GLR S+ + +L + I+ V + ++ Sbjct: 133 KWEGQRNKAIIEMLFSCGLRVSELTNLKLSNLYLDDLYIRVMGKGSKERLVPISPRAVEE 192 Query: 245 LAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKF 292 L + + F+N + T I K A AG+ K+ H +R Sbjct: 193 LNYWFLDRNQMVIKEGEEDYVFLNRRGAHLTRTMILIMLKRYAKGAGIKKTISPHTLRHS 252 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324 AT + GA + A G ++V E YT Sbjct: 253 FATALLEGGADLRSIQAMLGHESVVTTEIYTH 284 >gi|238650850|ref|YP_002916705.1| site-specific tyrosine recombinase XerC [Rickettsia peacockii str. Rustic] gi|259710438|sp|C4K256|XERC_RICPU RecName: Full=Tyrosine recombinase xerC gi|238624948|gb|ACR47654.1| site-specific tyrosine recombinase XerC [Rickettsia peacockii str. Rustic] Length = 305 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 46/287 (16%), Positives = 102/287 (35%), Gaps = 28/287 (9%) Query: 68 PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRS 121 T+++ LI++++K + + ++ IS+ + + I T IR Sbjct: 3 DTSIQALINKWQKYLVLQRNYSNHTVISYNNDLKHFLEFMNYYNSELVTINHIKTADIRL 62 Query: 122 GVESRK------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 T SS + L++++ +++ + + + S++ PK+ + + Sbjct: 63 IRSWLAKRNCDNFTASSISRGLSAVKNFYRFLEKTTQLNSHIIFSIKSPKKTKLLPKALS 122 Query: 176 KEDMQQFKSFW-------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228 ++D+ + + + SGLR S++ HLQN F K Sbjct: 123 EDDVVISLEHIEEYGNVKWVELRNKALLVLIYASGLRISEALSITKLHLQNLEFIRIIGK 182 Query: 229 TGTIITVEL-------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 + ++++L E F +++ + F+ G Sbjct: 183 GSKERIIPWLPIAKNLITQYLEILPYKLGDNEPIFRGKQGKELQPSVFNRELIKLKHFYG 242 Query: 282 VN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 + +AH R A+ + GA L G K++ + YTK + Sbjct: 243 LPQHLTAHSFRHSFASHLLEHGADLRSLQELLGHKSLSTTQNYTKTS 289 >gi|238892411|ref|YP_002917145.1| site-specific tyrosine recombinase XerC [Klebsiella pneumoniae NTUH-K2044] gi|262040877|ref|ZP_06014103.1| tyrosine recombinase XerC [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|329997490|ref|ZP_08302792.1| tyrosine recombinase XerC [Klebsiella sp. MS 92-3] gi|238544727|dbj|BAH61078.1| tyrosine recombinase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259041766|gb|EEW42811.1| tyrosine recombinase XerC [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328539058|gb|EGF65097.1| tyrosine recombinase XerC [Klebsiella sp. MS 92-3] Length = 300 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 42/279 (15%), Positives = 95/279 (34%), Gaps = 21/279 (7%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSG---VESR 126 ++ + + L+ + ++++ D + ++G + + +RS Sbjct: 9 AVARFLRHLGVERQLSPITLLNYQRQLDALIALADEAGLKSWSQCDAAQVRSFAVRSRRA 68 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 P+S L+++R F W V Q ++ NP + PK + +D+ + Sbjct: 69 GLGPASLALRLSALRSFFDWLVGQGELSANPAKGIAAPKIPRHLPKNIDVDDVNRLLDID 128 Query: 187 SEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFM 242 + R E + +GLR S+ ++HL + K + + + Sbjct: 129 LNDPLAVRDRAMLEVMYGAGLRLSELVNLDIKHLDLESGEVWVMGKGSKERRLPIGRNAV 188 Query: 243 KLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293 + + F ++D ++++A F K G+ + H +R Sbjct: 189 AWIEHWLDLRGLFGTDDDALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSF 248 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 AT ++ + G + + YT D L Sbjct: 249 ATHMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 286 >gi|119716715|ref|YP_923680.1| tyrosine recombinase XerD [Nocardioides sp. JS614] gi|119537376|gb|ABL81993.1| tyrosine recombinase XerD subunit [Nocardioides sp. JS614] Length = 318 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 46/290 (15%), Positives = 91/290 (31%), Gaps = 37/290 (12%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126 + + Y LA N+ S+ + G +T + + + Sbjct: 9 VARAVRTYLDHLTVERGLATNTLTSYRRDLRRYQEYLAECGVEHLADVTEGTVAAFLVRL 68 Query: 127 KH--------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + +SA + + ++R ++AV A +P +V+ P + D Sbjct: 69 REGDRDHPALSATSAARTVVAVRGFHRFAVADGLAATDPASAVKPPTPAKRLPKALPLAD 128 Query: 179 MQQFKSF-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-----TQK 228 ++ + + R E L +G R S++ V L ++ K Sbjct: 129 VEAILEAAGAPGTTLALRDRALLEVLYGTGARISEAVGLDVDDLDWGESGVEGTVLLRGK 188 Query: 229 TGTIITVELPDGFMKLLAMTPIGKETF-------------FINNDKQKMNATQFSIWFKA 275 G V + + + + F+N +++ Sbjct: 189 GGKERLVPVGSYAREAVDAYLVRGRPELVAASARVTGGALFLNARGGRLSRQSAWAVLVR 248 Query: 276 KATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 A +AGV + S H +R AT D GA + G +V + YT Sbjct: 249 AAERAGVTRDVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQVYT 298 >gi|120436224|ref|YP_861910.1| tyrosine recombinase [Gramella forsetii KT0803] gi|117578374|emb|CAL66843.1| tyrosine recombinase [Gramella forsetii KT0803] Length = 298 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 52/279 (18%), Positives = 93/279 (33%), Gaps = 26/279 (9%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSG----DFDYRKITTKHIRSGVES--RKHTP 130 +Y L+ NS ++ ++I KI+ K I+ + S + Sbjct: 11 QYYLKLE-RGLSENSIANYSLDVIKLINYLDVNEIQISPDKISEKWIQEFIYSVSKDLNA 69 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---- 186 S + ++ +R F + + ++Y NP +E PK + + ++ + + Sbjct: 70 RSQSRLISGLRSFFSYLLFEDYRKDNPLDLMESPKIGRKLPDTISIAEVDKIIAAIDLSK 129 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFMKLL 245 +EG + R E L GLR S+ + L F T K V + + +K + Sbjct: 130 NEGERNRAIIETLYGCGLRVSELTDLKISDLFFKEGFIKVTGKGDKQRFVPISEYTVKFI 189 Query: 246 AMTPIGKETFFI-----------NNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKF 292 + N K+ K AG+ S H R Sbjct: 190 NLYKDQVRNHQDIKPEATDTLFLNRRGNKLTRAMIFTIVKKLTEVAGISKKVSPHTFRHS 249 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 AT + GA + G +++ E Y DR L Sbjct: 250 FATHLLENGADLRAIQQMLGHESITTTEVYVH-VDRSHL 287 >gi|302338068|ref|YP_003803274.1| tyrosine recombinase XerD [Spirochaeta smaragdinae DSM 11293] gi|301635253|gb|ADK80680.1| tyrosine recombinase XerD [Spirochaeta smaragdinae DSM 11293] Length = 311 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 55/281 (19%), Positives = 95/281 (33%), Gaps = 22/281 (7%) Query: 69 TTLKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVE 124 T K L+ +Y SLA SR S+ S +++ G + + Sbjct: 1 MTGKTLLRDYDAHLGAVLSLAPLSRESYVSAISRLLGWLEEEGKNPFSASDADLVDYLTL 60 Query: 125 SRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + + + ++ MR F + V +EY NP V+ PK + E+++ F Sbjct: 61 RFEEGSDKHTIAKLVSIMRSFFDFLVSEEYRQDNPARMVDAPKLGRSLPSVLSIEEVEAF 120 Query: 183 KSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVEL 237 + EG + R FE + +GLR S++ L I+ + L Sbjct: 121 LNAIPLETPEGLRDRALFELIYSAGLRVSEAVGLSAGSLYLRDGIIRVTGKGSKQRVIPL 180 Query: 238 PDGFMKLLAMT-----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA 286 D K + + F++ ++ FK + AGV+ Sbjct: 181 GDEARKWIGRYLTDARPLLAKSFHPTDALFLSRRGTPLSRKNVWKRFKQFSLLAGVDGKV 240 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 H +R AT GA + G + + YT D Sbjct: 241 HTLRHSFATHLLAGGADLRSVQELLGHSDISTTQIYTHIDD 281 >gi|183982521|ref|YP_001850812.1| integrase/recombinase, XerD [Mycobacterium marinum M] gi|183175847|gb|ACC40957.1| integrase/recombinase, XerD [Mycobacterium marinum M] Length = 313 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 46/292 (15%), Positives = 94/292 (32%), Gaps = 36/292 (12%) Query: 68 PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSGV 123 TL + Y +A N+ S+ + + D D K+ + + Sbjct: 3 TLTLDTQLQGYLDHLAIERGVAANTLSSYRRDLRRYSKHLEDRGITDLAKVGEDDVSEFL 62 Query: 124 ESRKH----------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 + + + SA + L ++R L ++A + A++ +V P + Sbjct: 63 VALRRGDPESGVLGLSAVSAARALIAVRGLHRFAAAEGLAALDVARAVRPPTPGRRLPKS 122 Query: 174 WTKEDMQQFKS--------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225 T +++ + R E L +G R S++ V + ++ Sbjct: 123 LTIDEVLALLEGAGGDNPADGPLTLRNRALLELLYSTGSRISEAVGLDVDDIDTQARTVL 182 Query: 226 -TQKTGTIITVELPDGFMKLLAMTPIGKET-----------FFINNDKQKMNATQFSIWF 273 K G V + ++ L + F+N +++ Sbjct: 183 LQGKGGKQRLVPVGRPAVQALDAYLVRGRPELARRGRGTPAIFLNARGGRLSRQSAWQVL 242 Query: 274 KAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + A +AG+ S H +R AT + GA + G +V + YT Sbjct: 243 QDAAERAGITSGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYT 294 >gi|94266109|ref|ZP_01289825.1| Phage integrase [delta proteobacterium MLMS-1] gi|93453327|gb|EAT03764.1| Phage integrase [delta proteobacterium MLMS-1] Length = 379 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 58/346 (16%), Positives = 124/346 (35%), Gaps = 22/346 (6%) Query: 7 LPPFVTKERTRHGKIIY-YFRKGHGR--RIRLPYPHESTFIPAYMSALTGST-----PKR 58 L F+ + R+ GK + +R GHG+ + ++ + +F A +A + Sbjct: 30 LTGFILEVRSTGGKTYHLRYRDGHGKLRQHKIGGADDISFDKAQAAATRLRSRVVLGEDP 89 Query: 59 EYINSPRKKPTTLKWLIS-EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117 +K+ TL+ +Y + + + F + ++ G+ +I Sbjct: 90 LAERQVKKQVPTLEEFAHGKYL--PYVKGYKRSWKSDFGYLKNHLLPLFGNQHLDQIKQA 147 Query: 118 HIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIR 172 + K ++ + + +R +F A + + NP V + R Sbjct: 148 EVIELHHGMKARGYALATCNRQVILLRYIFNLARKWKIPGADNNPTTGVVLFETNNGRER 207 Query: 173 PWTKEDMQQFKSF--WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--K 228 T+++ + K+ SE +Q + LL G R S+ + + S + K Sbjct: 208 YLTEDEAARLKAALESSENTQLKYIVSLLLLLGCRKSELLNSRWEDFDLARRSWRIPLSK 267 Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAH 287 +G V L +++LA P N + + F + KAG+ H Sbjct: 268 SGKARYVPLSTAALEVLASIPRLSPYVVPNPKTLQPFVSVFRS-WDTARKKAGLPDVRMH 326 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 +R A+ ++G + +E+ G + + Y+ ++ L Sbjct: 327 DLRHSFASFLVNSGRSIYEVSQLLGHSQLKTTQRYSHLSNDTLLAA 372 >gi|134093692|ref|YP_001098767.1| site-specific tyrosine recombinase [Herminiimonas arsenicoxydans] gi|133737595|emb|CAL60638.1| tyrosine recombinase XerD [Herminiimonas arsenicoxydans] Length = 309 Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats. Identities = 45/285 (15%), Positives = 90/285 (31%), Gaps = 30/285 (10%) Query: 71 LKWLIS-EYRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVES 125 + + + LA NS ++ G + + + Sbjct: 20 IDEFCDTLWLED----GLAKNSLEAYRRDLRLFAVWLQAERGKTLLAA-HADDVNAYFFA 74 Query: 126 RK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 R +S+ + L ++ ++ A+RQ ++ +PCL + K+ + ++ ++ Sbjct: 75 RHEVTKATSSNRRLAVLKRFYQLALRQNRISDDPCLKMRSAKQPLRIPKTLSEAQVEALL 134 Query: 184 SFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----------IFSIKTQK 228 + G + R E + SGLR ++ + N + Sbjct: 135 AAPDVTTPLGLRDRTMLELMYASGLRVTELVLLKSIEVGMNEGVLRITGKGGKTRLVPFG 194 Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 + +E + L + + F+ M F K A A + S Sbjct: 195 EEARVWIERYLKEARPLILDGQIDDALFVTARGAAMTRQMFWTLIKKHAAAAEINAPLSP 254 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 H +R AT + GA + G + + YT A R RL Sbjct: 255 HTLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVA-RERL 298 >gi|57238849|ref|YP_179985.1| tyrosine recombinase xerD [Ehrlichia ruminantium str. Welgevonden] gi|58578779|ref|YP_196991.1| tyrosine recombinase xerD [Ehrlichia ruminantium str. Welgevonden] gi|57160928|emb|CAH57833.1| putative integrase/recombinase XerD or XerC [Ehrlichia ruminantium str. Welgevonden] gi|58417405|emb|CAI26609.1| Tyrosine recombinase xerD [Ehrlichia ruminantium str. Welgevonden] Length = 312 Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats. Identities = 39/292 (13%), Positives = 99/292 (33%), Gaps = 34/292 (11%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKI-----TTKHIRSGVES 125 + ++E+ + ++ N+ S+ S + + + I K + Sbjct: 5 EKYVNEFLTAIAAEKHISYNTYQSYMSDLLDLCKFFDCKNLALIEVSRDDLKDYVRLMHK 64 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW-----TKEDMQ 180 R++ S+ + +++++ L+K+ + +A +P LS++ P+ + ++ Sbjct: 65 REYKSSTISRKISAIKNLYKFFCKDNIIAYDPALSIDFPRLSRTLPKALNIEEVSRLLDT 124 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 +G + L SG+R S+ + ++ + + + + I + Sbjct: 125 AALDSSPDGLRTNAIINILYSSGIRVSELIYLKLNSIKEALNNDNIEISYITIRGKANRE 184 Query: 241 FMKLLAM--------------------TPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280 + LL I + F + + K + A Sbjct: 185 RIVLLNSSAIVSIQKYLEVYMHFVPNGYEISQWLFPGTKFDNPITRQRIGQLLKDLSISA 244 Query: 281 GVNKS---AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 GV+ + H +R AT + G+ + G ++ + YT A+ Sbjct: 245 GVDMTRISPHKLRHSFATHLLNNGSDIIFIQKMLGHTSLSTTQIYTYVANEK 296 >gi|242242534|ref|ZP_04796979.1| tyrosine recombinase XerC [Staphylococcus epidermidis W23144] gi|242233961|gb|EES36273.1| tyrosine recombinase XerC [Staphylococcus epidermidis W23144] Length = 286 Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats. Identities = 35/265 (13%), Positives = 92/265 (34%), Gaps = 20/265 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVESRKHTPSSAIQFLTS 139 + + + S+ Q + T ++ + + S + ++ + +++ Sbjct: 6 RNFSEYTLKSYHDDLVQFNNFLEREHLQLETFEYKDARNYLAFLYSNQLKRTTVSRKIST 65 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPRLA 195 +R +++ + Q INP + + PK++ + + +E+M Q + +G + ++ Sbjct: 66 LRTFYEFWMTQNNSIINPFVQLVHPKKEKYLPQFFYEEEMEALFQTVEHDNKKGIRDKVI 125 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254 E L +G+R S+ ++ + N K + + + + + Sbjct: 126 IELLYATGIRVSELINIKLKDIDMNLPGVKVLGKGNKERFIPFGEFCRQSIERYLEEFQP 185 Query: 255 FFINNDKQ--------KMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGATA 304 + N + + AGV + H +R AT + GA Sbjct: 186 KQLANHDYLIVNMKGDPITERGVRYVLNDVVKRTAGVNDIHPHKLRHTFATHLLNQGADL 245 Query: 305 HELMATYGWKTVDQAETYTKGADRI 329 + + G + YT +++ Sbjct: 246 RTVQSLLGHVNLSTTGRYTHVSNQQ 270 >gi|257784281|ref|YP_003179498.1| tyrosine recombinase XerD [Atopobium parvulum DSM 20469] gi|257472788|gb|ACV50907.1| tyrosine recombinase XerD [Atopobium parvulum DSM 20469] Length = 302 Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats. Identities = 39/284 (13%), Positives = 86/284 (30%), Gaps = 24/284 (8%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR---KITTKHIRSGV--- 123 L +EY L+VN+ ++ + + ++T + + Sbjct: 3 LAQARTEYIAYVAVERGLSVNTLDAYTRDLEGYLFWLSGKKITSPNQVTRSDVEEYIGSL 62 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 P+S + ++R K+ ++ +P + R ++E ++ Sbjct: 63 RDLGMAPASVERHTAAIRNFHKFMAVEQICESSPAEDLPTTARIQRLPDVISQEKAEELL 122 Query: 184 SFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------- 232 S + + E L GLR S+ C V+ + ++ G+ Sbjct: 123 DQPFPNSPLGIRDKAILELLYGCGLRVSELCDLEVRGVLLEDELLRVFGKGSKERVVPVL 182 Query: 233 ----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAH 287 ++ + L + F+N +++ G+ H Sbjct: 183 GSAYRALKTYLFEARSLLLKHGQVSEVFVNARGGRISRQSVHKLVANYGRVVGIEGLHPH 242 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +R AT + GA + G + + YT DR + Sbjct: 243 TLRHSFATHLLEGGADLRSVQELLGHVDISTTQLYTH-VDRSHI 285 >gi|114705350|ref|ZP_01438258.1| tyrosine recombinase [Fulvimarina pelagi HTCC2506] gi|114540135|gb|EAU43255.1| tyrosine recombinase [Fulvimarina pelagi HTCC2506] Length = 323 Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats. Identities = 37/291 (12%), Positives = 91/291 (31%), Gaps = 33/291 (11%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQ----IIRKSGDFDYRKITTKHIRSGVESR 126 +I + + A N+ ++ D + G + + + + Sbjct: 16 GAVIEAFLEMMAVERGAADNTLQAYARDLDAARSFLKPHGGLMRADSDAIRAYLTSLSAE 75 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + S+ + L+++R L+++ + +P +E ++K + +++++ + Sbjct: 76 GLSESTRSRRLSALRQLYRFLYTEGRRTDDPTSPIEGARKKRPLPKVMSEDEVDRLLDLA 135 Query: 187 SEGS--------------QPRLAFEFLLYSGLRCSDSCRAGVQH-LQNNIFSIKTQKTGT 231 + + R+ E L +GLR S+ + K Sbjct: 136 EAETNDAELSPSSRVRAIRLRVLVELLYATGLRVSELVSLPKSMLVNRARTITVLGKGNK 195 Query: 232 IITVELPDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 V + + L G F +++ ++ F+ K A + G Sbjct: 196 ERLVPIGAAARESLDAYGQALKAAGLNNEGPWLFPADSESGHLSRQVFARELKGLAARTG 255 Query: 282 V---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + S H +R A+ GA + G + + YT + Sbjct: 256 ISAAKISPHVLRHAFASHLLQNGADLRAVQELLGHADISTTQIYTHVLEER 306 >gi|260596035|ref|YP_003208606.1| site-specific tyrosine recombinase XerC [Cronobacter turicensis z3032] gi|260215212|emb|CBA27069.1| Tyrosine recombinase xerC [Cronobacter turicensis z3032] Length = 306 Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats. Identities = 45/278 (16%), Positives = 93/278 (33%), Gaps = 21/278 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRS---GVESRK 127 I+ + + L+ + +++E I+ +G+ + + +R+ Sbjct: 15 IARFLRYLKVERQLSPVTLLNYERQLAAIVGLAGEAGLKSWAQCDAAMVRTLAVRSRRAG 74 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 PSS L+++R F W V Q + NP V PK + +D+ + Sbjct: 75 LGPSSLALRLSALRSFFDWQVSQGELKANPAKGVSTPKTPRHLPKNIDVDDVNRLLDIDL 134 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243 + R E + +GLR S+ +HL + K + + + Sbjct: 135 NDPLAVRDRAMLEIMYGAGLRLSELVNIDCRHLDLASGEVWVMGKGSKERRLPIGRSAVA 194 Query: 244 LLAMTPIGKETFFINN-------DKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 + +E F ++ ++++A F K G+ + H +R A Sbjct: 195 WIDHWLNLRELFGPDDDALFLSKQGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFA 254 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 T ++ + G + + YT D L Sbjct: 255 THMLESSGDLRAVQELLGHANLSTTQIYTH-LDFQHLA 291 >gi|237718760|ref|ZP_04549241.1| integrase [Bacteroides sp. 2_2_4] gi|260175400|ref|ZP_05761812.1| integrase, site-specific recombinase [Bacteroides sp. D2] gi|299144639|ref|ZP_07037707.1| tyrosine recombinase XerC [Bacteroides sp. 3_1_23] gi|315923630|ref|ZP_07919870.1| integrase [Bacteroides sp. D2] gi|229451892|gb|EEO57683.1| integrase [Bacteroides sp. 2_2_4] gi|298515130|gb|EFI39011.1| tyrosine recombinase XerC [Bacteroides sp. 3_1_23] gi|313697505|gb|EFS34340.1| integrase [Bacteroides sp. D2] Length = 293 Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats. Identities = 46/276 (16%), Positives = 98/276 (35%), Gaps = 24/276 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSGVESRKH 128 LI + + + + + +++ Q+ G F+ ++ + IR + S Sbjct: 2 LIESFLDYLQYERNYSEKTVLAYGEDIKQLQEFAQEEYGKFNPLEVEAELIREWIVSLMD 61 Query: 129 TPSS---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + + L+S+R +K+ +RQ I+P ++ PK K + +M + Sbjct: 62 KGYTSTSVNRKLSSLRTFYKYLIRQGKTTIDPLRKIKGPKNKKPLPVFLKENEMNRLLDD 121 Query: 186 W-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 +G + RL E +G+R S+ + + + +K + Sbjct: 122 TDFGEGFKGCRDRLVIEVFYATGMRLSELIGLDDKDVDFSASLLKVTGKRNKQRLIPFGD 181 Query: 241 FMKLLAMTPIGKET---------FFINNDKQKMNATQFSIWFKA-KATKAGVNK-SAHGV 289 ++ L + I FFI + +++ K + A + K S H + Sbjct: 182 ELRELMLEYINVRNETIPERSEAFFIRENGERLYKNLVYNLVKRNLSKVATLKKRSPHVL 241 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 R AT + A + G +++ E YT Sbjct: 242 RHTFATTMLNNEAELGAVKELLGHESITTTEIYTHA 277 >gi|189485678|ref|YP_001956619.1| tyrosine recombinase XerC [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287637|dbj|BAG14158.1| tyrosine recombinase XerC [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 314 Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats. Identities = 36/270 (13%), Positives = 82/270 (30%), Gaps = 21/270 (7%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY--RKITTKHIRSGVESRKH---T 129 +Y + + + ++ +++ + IR +E + + Sbjct: 30 FEKYLNAE--RNFSAHTLRAYKRDISDFALFLQKKRLNFSHAGKRDIREFLEELGNKKLS 87 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSFWSE 188 ++ + L + +K+ + + + N S+ K+ + T+ +MQ + Sbjct: 88 RATLARKLAVLHSFYKFLIINKIIKENFIESMPASLKKDKKVPSFLTENEMQMLLNLPDL 147 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLAM 247 + R E GLR + ++++ T K V + D + + Sbjct: 148 KPRDRAMIELFYSCGLRIEELVSLDLKNIDFISNVVTVTGKRNKERIVPVGDICLHAIKD 207 Query: 248 TPIGKETFFINNDKQ----------KMNATQFSIWFKAKATKAGV--NKSAHGVRKFSAT 295 + + D + ++ KAG S H +R AT Sbjct: 208 YINKRRNLGLPYDIRSPVFLSDRAKRLGQRTARRILHRYFVKAGFTKKVSPHTLRHTFAT 267 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKG 325 D G + G K + + YT Sbjct: 268 HILDRGCDLRSVQEMLGHKNLSSTQIYTHV 297 >gi|294625207|ref|ZP_06703848.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292600481|gb|EFF44577.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 323 Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats. Identities = 46/312 (14%), Positives = 99/312 (31%), Gaps = 37/312 (11%) Query: 46 AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK 105 A L P + ++ ++ + + +A + S+ + + R Sbjct: 7 AERRQLARHLPPVQPADASV-----IERFLDRFWAE---QGVARQTLESYRRDLEGLARW 58 Query: 106 S-----GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 G + ++P S + L+++R + +R + +P Sbjct: 59 RDGAGGGLLGIDRAVLFDYLRWRTRANYSPRSTARLLSTLRAFYGLCLRDGVRSDDPTAL 118 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQH 216 ++ P+ + T+ ++ + + + R E + +GLR S+ Sbjct: 119 IDPPQLPRSLPKALTESQIEALLAAPDLDTLAGLRDRAMLELMYAAGLRVSELVNLPAVG 178 Query: 217 LQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIG----------------KETFFINN 259 + ++ V L + L + FI+ Sbjct: 179 VNLRQGVLRVTGKGSKDRLVPLGEESQHWLERYLREARPLLAANKPVTAVDGQVPLFIDV 238 Query: 260 DKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTV 316 +Q ++ QF K A AG++ S HG+R AT + GA L G ++ Sbjct: 239 SRQPLSRQQFWALVKRYAAAAGIDPATVSPHGLRHSFATHLLNHGADLRALQMLLGHSSL 298 Query: 317 DQAETYTKGADR 328 + YT A + Sbjct: 299 STTQIYTLVARQ 310 >gi|153008242|ref|YP_001369457.1| site-specific tyrosine recombinase XerD [Ochrobactrum anthropi ATCC 49188] gi|151560130|gb|ABS13628.1| tyrosine recombinase XerD [Ochrobactrum anthropi ATCC 49188] Length = 307 Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats. Identities = 39/289 (13%), Positives = 87/289 (30%), Gaps = 33/289 (11%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR---K 127 I + + A N+ S+ + + + + HIRS +++ Sbjct: 6 AIENFLEMMSAERGAAENTLESYRRDLEAVAEALSARGVNLAEAGADHIRSAIDAMATEG 65 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185 +S + L+++R F++ + Y +P +V+ PK++ + + E++ + Sbjct: 66 FAATSQARRLSALRQFFRFLYSEGYRQDDPTGTVDAPKKQKPLPKIMSVENVTKLLDRAA 125 Query: 186 -----------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTII 233 + + E L +G+R S+ V + + + K Sbjct: 126 LETSEEAEPAERFKALRLHALIETLYATGMRVSELVGLPVGVARIDHRFLLVCGKGSKER 185 Query: 234 TVELPDGFMKLLAMTP------IGKETFFINNDKQKMNATQFSIWFKAKAT-------KA 280 V L + L G + + F + + Sbjct: 186 MVPLSPKAREALQRFLALRDSLPGSDDNPWLFPAFSESGHLARQVFARELKGLAARAGLS 245 Query: 281 GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 S H +R A+ GA + G + + YT + Sbjct: 246 AAAVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEER 294 >gi|296840755|ref|ZP_06863381.2| tyrosine recombinase XerC [Neisseria polysaccharea ATCC 43768] gi|296840030|gb|EFH23968.1| tyrosine recombinase XerC [Neisseria polysaccharea ATCC 43768] Length = 334 Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats. Identities = 39/293 (13%), Positives = 98/293 (33%), Gaps = 30/293 (10%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGV 123 Y ++ + ++ ++ +++ + ++ + + + Sbjct: 35 FAAHFDAYLENIVREGKSEHTVAAYRRDLEELFALLAQMPSEAEGGVPQDLSRRDFTAAL 94 Query: 124 ESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + + L+S R W V++ + +P ++ PK+ + ++E + Sbjct: 95 RRLSQRGLNARTLARKLSSWRQYCAWLVKRGLLHTDPTADIKPPKQPERVPKALSQEWLN 154 Query: 181 QFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIIT 234 + +G + FE + SGLR S+ V + + + T K Sbjct: 155 RMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNVDDVYLDEAWVHVTGKGRKQRQ 214 Query: 235 VELPDGFMKLLAMTPIGKETF------FINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 V L ++ L ++T F + +++ Q ++ A + G + S Sbjct: 215 VPLTGKSVEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLESWAVQNGDGRHISP 274 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 H +R A+ + + G ++ + YTK L + R+ Sbjct: 275 HMMRHSYASHLLQSSRDIRAVQELLGHSSLSTTQIYTK------LDFDHIARL 321 >gi|167618213|ref|ZP_02386844.1| phage integrase family protein [Burkholderia thailandensis Bt4] Length = 448 Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats. Identities = 61/366 (16%), Positives = 112/366 (30%), Gaps = 26/366 (7%) Query: 9 PFVTKERTRHGKI----IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64 P + T HG+ Y G R+ ++ E T A A R+ + Sbjct: 29 PGFLCKVTAHGRKVFMLQYRTNWGERRKPKIGQFGELTVEQARSIAQDWLADVRKGNDPS 88 Query: 65 RKK-----PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTKH 118 K T+K L +++ + ++ +++ D+ I G +T +H Sbjct: 89 AAKLAARMSPTVKELCTQFMEEYSRPRNKPSTVDTYQDQIDRFIVPMLGKLKVPDVTRQH 148 Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 I + + P +A + L+ +R +F A Y PK G + D Sbjct: 149 ITTLMRDLAKIPVTANRVLSCIRKMFNMAEVWGYRPDGSNPCRHVPKYPENGETRYIVND 208 Query: 179 MQQFKSFWSEGSQPR--------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230 + + + LA R S+ + I + Sbjct: 209 ELARLYTYLDRADAEGLEHPTLTLAVRLQFEFSARMSEIRLLEWSWIDFENRRIVWPDSK 268 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA-----TQFSIWFKAKATKAGV-NK 284 T + L + ++ + + +K +A V + Sbjct: 269 TGDISKPMSEVAYQLLSNACRIDDSPYVCPAIFDSSIPLPESTYYNGWKRILKRANVVHV 328 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSRRISS-V 342 HG+R +AT A++G MA KTV Y D IR + + Sbjct: 329 GTHGIRHRAATDIANSGIPVKVGMALTAHKTVSMFMRYVHAEDDPIRAAAEKVANLRRDT 388 Query: 343 VDSDDP 348 +D+ P Sbjct: 389 IDNRAP 394 >gi|34581137|ref|ZP_00142617.1| integrase/recombinase [Rickettsia sibirica 246] gi|28262522|gb|EAA26026.1| integrase/recombinase [Rickettsia sibirica 246] Length = 305 Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats. Identities = 47/287 (16%), Positives = 101/287 (35%), Gaps = 28/287 (9%) Query: 68 PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRS 121 T+++ LI++++K + + ++ IS+ + + I T IR Sbjct: 3 DTSIQALINKWQKYLVLQRNYSNHTVISYNNDLKHFLEFMNYYNSELVTINHIKTADIRL 62 Query: 122 GVESRK------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 T SS + L++++ +++ + + + S++ PK+ + + Sbjct: 63 IRSWLAKRNCDNFTASSISRGLSAVKNFYRFLEKTTQLNSHIIFSIKSPKKTKLLPKALS 122 Query: 176 KEDMQQFKSFW-------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228 ++D+ + + + SGLR S++ HLQN F K Sbjct: 123 EDDVVISLEHIEEYGNVKWVELRNKALLVLIYASGLRISEALSITKLHLQNLEFIRIIGK 182 Query: 229 TGTIITVEL-------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 + ++++L E F +K+ F+ G Sbjct: 183 GSKERIIPWLPIAKNLITQYLEILPYKLGDNEPIFRGKQGKKLQPPVFNRELIKLKHFYG 242 Query: 282 VN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 + +AH R A+ + GA L G K++ + YTK + Sbjct: 243 LPQHLTAHSFRHSFASHLLEHGADLRSLQELLGHKSLSTTQNYTKTS 289 >gi|27467846|ref|NP_764483.1| xerC protein [Staphylococcus epidermidis ATCC 12228] gi|57866718|ref|YP_188400.1| tyrosine recombinase XerC [Staphylococcus epidermidis RP62A] gi|282876316|ref|ZP_06285183.1| tyrosine recombinase XerC [Staphylococcus epidermidis SK135] gi|34222792|sp|Q7ZAJ4|XERC_STAES RecName: Full=Tyrosine recombinase xerC gi|81674902|sp|Q5HPU0|XERC_STAEQ RecName: Full=Tyrosine recombinase xerC gi|27315391|gb|AAO04525.1|AE016747_22 xerC protein [Staphylococcus epidermidis ATCC 12228] gi|57637376|gb|AAW54164.1| tyrosine recombinase XerC [Staphylococcus epidermidis RP62A] gi|281295341|gb|EFA87868.1| tyrosine recombinase XerC [Staphylococcus epidermidis SK135] gi|329736214|gb|EGG72486.1| tyrosine recombinase XerC [Staphylococcus epidermidis VCU028] gi|329736604|gb|EGG72870.1| tyrosine recombinase XerC [Staphylococcus epidermidis VCU045] Length = 296 Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats. Identities = 35/265 (13%), Positives = 93/265 (35%), Gaps = 20/265 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVESRKHTPSSAIQFLTS 139 + + + S+ Q + T ++ + + S + ++ + +++ Sbjct: 16 RNFSEYTLKSYHDDLVQFNNFLEREHLQLETFEYKDARNYLAFLYSNQLKRTTVSRKIST 75 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPRLA 195 +R +++ + Q+ INP + + PK++ + + +E+M Q + +G + ++ Sbjct: 76 LRTFYEFWMTQDNSIINPFVQLVHPKKEKYLPQFFYEEEMEALFQTVEHDNKKGIRDKVI 135 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254 E L +G+R S+ ++ + N K + + + + + Sbjct: 136 IELLYATGIRVSELINIKLKDIDMNLPGVKVLGKGNKERFIPFGEFCRQSIERYLEEFQP 195 Query: 255 FFINNDKQ--------KMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGATA 304 + N + + AGV + H +R AT + GA Sbjct: 196 KQLANHDYLIVNMKGDPITERGVRYVLNDVVKRTAGVNDIHPHKLRHTFATHLLNQGADL 255 Query: 305 HELMATYGWKTVDQAETYTKGADRI 329 + + G + YT +++ Sbjct: 256 RTVQSLLGHVNLSTTGRYTHVSNQQ 280 >gi|283782972|ref|YP_003373726.1| site-specific tyrosine recombinase XerC [Gardnerella vaginalis 409-05] gi|283441162|gb|ADB13628.1| site-specific tyrosine recombinase XerC [Gardnerella vaginalis 409-05] Length = 322 Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats. Identities = 53/287 (18%), Positives = 97/287 (33%), Gaps = 34/287 (11%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGV--ESRK 127 LI +Y L ++ ++ S Q + G + ++TT +RS + ESR Sbjct: 21 LIDDYIDYVRANKGLGERTQKAYASDILQCLAWCNRHGFNNISELTTDDLRSWMADESRS 80 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED--------- 178 H SS + + ++R F W EY++ NP + K K + Sbjct: 81 HARSSLARKVVAVRGFFAWCQHVEYISGNPAEILMTSKIKNMLPSVLDEYQAESLMNNVD 140 Query: 179 ------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGT 231 K+ + G + E L +G+R + +Q + + T K Sbjct: 141 SKANVSTSCPKNQKAVGLRNAAILELLYATGIRVGELTSLNIQDINFSSHTIKVTGKGNK 200 Query: 232 IITVELPDGFMKLLAMTPIGKETF-----------FINNDKQKMNATQFSIWFKAKATKA 280 V K L+ F+ ++++ +A A Sbjct: 201 QRVVPFGVPAYKALSAWISKDGREILLRNSVEEAVFLGTRGKRIDQRLVRQIVHDEAKSA 260 Query: 281 GVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 V S H +R +AT + GA E+ G +++ + YT + Sbjct: 261 HVPDISPHALRHSAATHMLNGGADLREVQELLGHSSLNTTQRYTHVS 307 >gi|299135445|ref|ZP_07028635.1| tyrosine recombinase XerC [Afipia sp. 1NLS2] gi|298589853|gb|EFI50058.1| tyrosine recombinase XerC [Afipia sp. 1NLS2] Length = 327 Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats. Identities = 36/292 (12%), Positives = 81/292 (27%), Gaps = 34/292 (11%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQ----IIRKSGD----FDYRKITTKHIRSGVES 125 + + L+ + ++E Q + G + I +R+ + + Sbjct: 28 AARWLAHLKSERRLSPKTLEAYERDLRQCLMFLAEHWGKPASLKAFAAIEATDVRAFMAA 87 Query: 126 RK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 R+ S ++ L +R ++ R+ + ++ PK +P + Sbjct: 88 RRADDIGGRSLMRALAGLRSFGRFLEREGKGKVGALSAIRAPKISKTLPKPLAVSAARNL 147 Query: 183 KSFWSEGSQPRLAFEFL---------LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233 + R + + SGLR S++ + + TG Sbjct: 148 TEADIRAGEDRPPWIWARDAAVMALLYGSGLRISEALGLNRRDIPEPGRGDVITVTGKGN 207 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQ----------KMNATQFSIWFKAKATKAGVN 283 + +L + ++ + + G+ Sbjct: 208 KTRMVPVLQGVLEAVQDYIAQCPYPLAPEKPVFVGARGGPLSPRIIQLTMERLRGALGLP 267 Query: 284 --KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 + H +R AT G + G ++ + YT G D RL Sbjct: 268 DSATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQIYT-GIDAERLMD 318 >gi|229916183|ref|YP_002884829.1| tyrosine recombinase XerD [Exiguobacterium sp. AT1b] gi|229467612|gb|ACQ69384.1| tyrosine recombinase XerD [Exiguobacterium sp. AT1b] Length = 295 Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats. Identities = 48/280 (17%), Positives = 101/280 (36%), Gaps = 24/280 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTP 130 I + + ++ N+R ++ S Q G ++ ++T HI +E Sbjct: 6 IESFLQYMTVEKRMSANTRQAYASDLTQYASTLTQLGVEEWNEVTRSHIVKHIEELSQAG 65 Query: 131 S---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185 S + ++S+R+ +P L +E PK + + W++ ++++ Sbjct: 66 RASSSLRRAVSSIRMFHHHLKMTGVTTTDPSLYLESPKAEKQLPDTWSQTEVERLLDSVP 125 Query: 186 --WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 + R E L +G+R S+ + LQ + ++ + G + + Sbjct: 126 TSDPLSLRDRAMLELLYGTGMRVSELLGLDLDDLQFELGYLQCEGKGERARIIPVSSVAQ 185 Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291 I + F+N +++ F K +A AG+ K + H +R Sbjct: 186 SFVERYIQQARNGLGGRETEALFLNGRGGRLSRQGFWKMIKRRAKLAGIEKEITPHVLRH 245 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 AT + GA + G + + YT ++ RL Sbjct: 246 SFATHLLENGADLRAIQQMLGHADLATTQVYTH-VNKSRL 284 >gi|120555190|ref|YP_959541.1| tyrosine recombinase XerD [Marinobacter aquaeolei VT8] gi|120325039|gb|ABM19354.1| tyrosine recombinase XerD subunit [Marinobacter aquaeolei VT8] Length = 301 Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats. Identities = 48/283 (16%), Positives = 94/283 (33%), Gaps = 25/283 (8%) Query: 72 KWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESR 126 + LI + + L +R ++ S ++ G R + + + Sbjct: 7 EQLIERFSDAVWLEDGLGEKTRQAYASDLYRLSGWLEQQAGAPTLRSARRTDLLAWMSRG 66 Query: 127 ---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 S+A + L+ +R +++ +R+ +A +P L ++ P+ T+ D++ Sbjct: 67 LSDGLKTSTAARRLSGVRRFYRFLLREGIIAEDPTLRIDSPRLPRRLPDTLTEADVESLL 126 Query: 184 SFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELP 238 + + R E L GLR S+ V + ++ Q G V L Sbjct: 127 TEPDPELPVELRDRAMLEILYGCGLRVSELTGLTVDQVNLRQGVVRIQGKGGKERLVPLG 186 Query: 239 DGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 + + L F N M F + A + G+ + S Sbjct: 187 EEAVDWLLQYMRQARGELLRGKTSDALFPGNRGTAMTRQAFWYRIRHYAIRCGITKHLSP 246 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 H +R AT + GA + G + + YT A + Sbjct: 247 HTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARQR 289 >gi|152972799|ref|YP_001337945.1| site-specific tyrosine recombinase XerC [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150957648|gb|ABR79678.1| tyrosine recombinase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 300 Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats. Identities = 41/279 (14%), Positives = 95/279 (34%), Gaps = 21/279 (7%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSG---VESR 126 ++ + + L+ + ++++ D + ++G + + +RS Sbjct: 9 AVARFLRHLGVERQLSPITLLNYQRQLDALIALADEAGLKSWSQCDAAQVRSFAVRSRRA 68 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 P+S L+++R F W V Q ++ NP + PK + +D+ + Sbjct: 69 GLGPASLALRLSALRSFFDWLVGQGELSANPAKGIAAPKIPRHLPKNIDVDDVNRLLDID 128 Query: 187 SEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFM 242 + R E + +GLR S+ ++HL + K + + + Sbjct: 129 LNDPLAVRDRAMLEVMYGAGLRLSELVNLDIKHLDLESGEVWVMGKGSKERRLPIGRNAV 188 Query: 243 KLLAMTPIGKETFFINND-------KQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293 + + F ++D ++++A F + G+ + H +R Sbjct: 189 AWIEHWLDLRGLFGTDDDALFLSKLGKRISARNVQKRFAEWGIRQGLNSHVHPHKLRHSF 248 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 AT ++ + G + + YT D L Sbjct: 249 ATHMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 286 >gi|51473985|ref|YP_067742.1| site-specific tyrosine recombinase XerC [Rickettsia typhi str. Wilmington] gi|81389926|sp|Q68VT2|XERC_RICTY RecName: Full=Tyrosine recombinase xerC gi|51460297|gb|AAU04260.1| DNA integrase/recombinase XerC [Rickettsia typhi str. Wilmington] Length = 305 Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats. Identities = 45/284 (15%), Positives = 101/284 (35%), Gaps = 28/284 (9%) Query: 68 PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKH 118 +++ LI +++K + + N+ I++ + + + + + + Sbjct: 3 DISIQELIKQWQKYLILQRNYSNNTVIAYNNDLKHFLEFMNYYNSELVTINHIKTVDIRL 62 Query: 119 IRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 IRS + RK+ T SS + L++++ +K+ + + + S++ PK+ + + Sbjct: 63 IRSWLAKRKYENFTASSIARGLSTVKNFYKFLEKTILLNSHIIFSIKSPKKAKLLPKALS 122 Query: 176 KEDMQQFKSFW-------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228 +D+ + + + +GLR S++ HLQN F K Sbjct: 123 VDDVLISLEHIEGYGNVKWVELRNKALLVLIYAAGLRISEALSITKLHLQNLEFIKIIGK 182 Query: 229 TGTIITVELPDGFMK-------LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 + +L E F +K+ + F+ G Sbjct: 183 GSKERIIPWLPFARNLITKYLGILPYKLDENEPIFRGKHGKKLQPSVFNRELIKLKRVYG 242 Query: 282 VN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + +AH R A+ + GA + G K++ + YT Sbjct: 243 LPEYLTAHSFRHSFASHLLEYGADLRSIQELLGHKSLSTTQKYT 286 >gi|52080216|ref|YP_079007.1| site-specific tyrosine recombinase XerC [Bacillus licheniformis ATCC 14580] gi|52785593|ref|YP_091422.1| site-specific tyrosine recombinase XerC [Bacillus licheniformis ATCC 14580] gi|81385577|sp|Q65JN5|XERC_BACLD RecName: Full=Tyrosine recombinase xerC gi|52003427|gb|AAU23369.1| site-specific integrase/recombinase [Bacillus licheniformis ATCC 14580] gi|52348095|gb|AAU40729.1| CodV [Bacillus licheniformis ATCC 14580] Length = 304 Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats. Identities = 42/278 (15%), Positives = 91/278 (32%), Gaps = 27/278 (9%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSG---VESRK 127 L EY + + + + + + S + R G + +T +R + Sbjct: 10 LFIEYLQIE--KNYSKYTIVGYISSIEDFERFLHVQGIKGFEDVTYPDVRIFLTEAHEKG 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFK 183 T + + ++++R +K+ +R++ V NP L V PK+ + +++ + Sbjct: 68 LTRRTISKKISALRSFYKFLLREKLVKENPFLLVSLPKQDKRIPKFLYEKELEELFEVSD 127 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFM 242 G + + EFL +G+R S+ C L + ++ K + Sbjct: 128 LSTPLGQRNQALLEFLYATGMRVSELCSLKESDLDLFLDTVLVHGKGRKQRYIPFGSFAR 187 Query: 243 KLLAMTPIG------------KETFFINNDKQKMNATQFSIWFKAKATKAG--VNKSAHG 288 + L + F+N + K ++ H Sbjct: 188 EALDLYLQNGRRILLLKAKEPCPFIFLNQRGGPLTPRGVRYILGELVKKTSGTLHIHPHM 247 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 +R AT + GA + G + + YT + Sbjct: 248 LRHTFATHLLNEGADLRSVQELLGHSNLSSTQVYTHVS 285 >gi|225677009|ref|ZP_03788023.1| site-specific recombinase, phage integrase [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590948|gb|EEH12161.1| site-specific recombinase, phage integrase [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 310 Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats. Identities = 44/285 (15%), Positives = 90/285 (31%), Gaps = 32/285 (11%) Query: 71 LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS-----GDFD---YRKITTKHIRS 121 L +I ++ + S + N+ S+ +I G+ + K++ +RS Sbjct: 3 LGSIIEKWYEWLRCNRSYSPNTLESYMRDLKDLISFLNTHIGGEVNVGTLEKLSVPELRS 62 Query: 122 GVESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + SR +A + L+ +R FK+ + S+ RP ++ + + + Sbjct: 63 WLTSRYARGVNARSNARALSVIRNFFKYIKNNYNIDNEAVFSLSRPIQRRTLPKALSIPN 122 Query: 179 MQQFKSFW--------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230 ++ + L +GLR S++ V + N T K Sbjct: 123 IKTLLKEMKLSDLGESWVVKREIAIIVLLYSTGLRISEALNLRVSDINNESLI-VTGKGD 181 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWFKAKATKAG 281 V + K + IN++ Q K+ T + + Sbjct: 182 KQRQVFILPVVKKCIQEYVKTCPYLGINDEAQYLFLGVRGKKLGRTYVANRLQKIRRILN 241 Query: 282 VN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + S H R AT + G +++ + YT Sbjct: 242 LPEILSPHAFRHSFATHLLQEDIDIRSIQQLLGHSSLETTQVYTH 286 >gi|73666749|ref|YP_302765.1| Phage integrase, N-terminal SAM- like [Ehrlichia canis str. Jake] gi|72393890|gb|AAZ68167.1| Phage integrase, N-terminal SAM- like protein [Ehrlichia canis str. Jake] Length = 309 Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats. Identities = 33/289 (11%), Positives = 90/289 (31%), Gaps = 34/289 (11%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH--IRSGVESRKHTPS 131 + + ++ ++ N+ S+++ + + + T +++ + Sbjct: 7 VEIFLEAITAEKHISYNTYQSYKTDLLGLCEFVSKKNLLLVDTSINELQNYIRLLYEKGY 66 Query: 132 SAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--- 185 A + +++++ + + R + +P L ++ PK + + E++ + Sbjct: 67 KANTVLRKISAIKNFYGFLYRDNMIESDPTLYLDAPKLSRSLPKALSFEEISRLLDVAAL 126 Query: 186 --WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 +G + L SG+R S+ + + + I + + Sbjct: 127 DGSPDGRRLNAMVNILYSSGIRISELVCLKFYSVLEALKDHNAEIYHIKIKGKANKERIV 186 Query: 244 LLA--------------------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 LL + + F + + K A AG++ Sbjct: 187 LLNLSAVESIKKYIEIYKYFVPNGFEVSQWLFPGTKFDYPITRQRVGQLLKDLAMNAGID 246 Query: 284 KS---AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + H +R AT + G+ + G + + YT A+ Sbjct: 247 ITKISPHKLRHSFATHLLNNGSNIIFIQKMLGHANLSTTQIYTHIANEK 295 >gi|331701475|ref|YP_004398434.1| Tyrosine recombinase xerC [Lactobacillus buchneri NRRL B-30929] gi|329128818|gb|AEB73371.1| Tyrosine recombinase xerC [Lactobacillus buchneri NRRL B-30929] Length = 314 Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats. Identities = 34/302 (11%), Positives = 91/302 (30%), Gaps = 32/302 (10%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRK 127 +Y +S + ++ +++ + R + ++ + + + + Sbjct: 12 QWFLKYLQSD--RHYSTDTIQAYQQAIAEFTRFLAEIPSERKPLTQVDSFDVEAFLSDLY 69 Query: 128 HTPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ---- 180 + +++++ + + V+ +A NP V R + +M+ Sbjct: 70 ERKYARNSIAQKVSALKSFYAFLVKNTVIANNPFEYVHLKSNHRRLPRFLYQNEMRALFQ 129 Query: 181 --QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVEL 237 + G + E L +G+R S+ + + + +I T K V Sbjct: 130 GARQNPNHQLGLRDTAVLETLYATGIRVSECAGIQLNDIDLDNRTILVTGKGNKQRYVPF 189 Query: 238 PDGFMKLLA------------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--N 283 + + + F+N+ + + + ++ + Sbjct: 190 GEYAQEAIETYLSDARSPIMAKYHQDHPFLFVNHYGRPLTSRGIEYLMDQIVKQSSLTTK 249 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343 H +R AT + GA + G ++ + YT + L + Sbjct: 250 IHPHMLRHTFATEMLNNGADMRSVQELLGHSSLSTTQIYTHVT-KSHLMNDYKKYFPRNN 308 Query: 344 DS 345 DS Sbjct: 309 DS 310 >gi|302342643|ref|YP_003807172.1| tyrosine recombinase XerD [Desulfarculus baarsii DSM 2075] gi|301639256|gb|ADK84578.1| tyrosine recombinase XerD [Desulfarculus baarsii DSM 2075] Length = 311 Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats. Identities = 47/279 (16%), Positives = 92/279 (32%), Gaps = 25/279 (8%) Query: 71 LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGV 123 L ++ Y LA N+ ++ I G ++ + Sbjct: 16 LHGMVDVYLDHLAGERGLARNTLAAYADDLADICGFLHDNGVQGWEQVDELHMVAYLAHA 75 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 +S + L++ R L + +R+E ++ +P ++ PK+ ++E+M + Sbjct: 76 AKEGLAANSRARRLSAARGLVGYLLRREKLSADPLATLRGPKKTAGLPHFLSQEEMLRLL 135 Query: 184 SFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS------------IKTQ 227 G + R E + +GLR S+ GV +Q I + Sbjct: 136 ETPAADSDLGRRDRAMLEAMYGAGLRVSEVIDLGVGQIQFQIGCLLVRGKGAKERLVPLH 195 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--S 285 + + G + L +T F+N K++ AG++ S Sbjct: 196 QVAIQRLEDYLRGPRQNLLRGQKASDTVFLNARGGKLSRMGVWKILAKHVAAAGIDHHVS 255 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT + GA + G + + YT Sbjct: 256 PHTLRHTFATHLLEGGADLRSVQLMLGHADIGTTQIYTH 294 >gi|295133714|ref|YP_003584390.1| tyrosine recombinase [Zunongwangia profunda SM-A87] gi|294981729|gb|ADF52194.1| tyrosine recombinase [Zunongwangia profunda SM-A87] Length = 299 Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats. Identities = 49/279 (17%), Positives = 94/279 (33%), Gaps = 25/279 (8%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRK----ITTKHIRSGVES 125 ++++ +Y L+VNS S+E ++I I + ++ + Sbjct: 3 WEYILKDYLTYLKLERGLSVNSISSYELDLIKLINFLKVKSISASPLTIDQETLQLFLYE 62 Query: 126 RKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 S + ++ ++ F + + ++Y NP +E PK + + E++ + Sbjct: 63 IAKELNSRSRARIISGLKSFFNYLIFEDYRKDNPTDLIEAPKIGRKLPETISVEEIDELI 122 Query: 184 SFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELP 238 + EG + R E L GLR S+ + L F T K V + Sbjct: 123 AAIDLTKTEGERNRAIIETLYGCGLRVSELTNLRISDLYFEEGFIKVTGKGDKQRFVPIS 182 Query: 239 DGFMKLLAMTPIGKETFFI-----------NNDKQKMNATQFSIWFKAKATKAGVNK--S 285 D +K + + N ++ + A KA + K S Sbjct: 183 DYNIKYITIYKDQVRAHQEIKPEASDTLFLNRRGAQLTRAMIFTIIRQLAEKANIRKKIS 242 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H R AT + GA + G +++ E Y Sbjct: 243 PHTFRHSFATHLLENGADLRAIQQMLGHESITTTEIYMH 281 >gi|254247398|ref|ZP_04940719.1| Phage integrase [Burkholderia cenocepacia PC184] gi|124872174|gb|EAY63890.1| Phage integrase [Burkholderia cenocepacia PC184] Length = 316 Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats. Identities = 47/302 (15%), Positives = 90/302 (29%), Gaps = 27/302 (8%) Query: 52 TGSTPKREYINSPRKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSG--- 107 + ++ + + LA N+ ++ + Sbjct: 9 AADNDTDAASPALLASRASIDVFCDALWLE----RGLARNTLDAYRRDLALFSQWLAATH 64 Query: 108 DFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 D + + +R +S+ + L+ R + WAVR+ + +P L + K+ Sbjct: 65 DAPLDSADEAMVTGYIAARSDGKATSSNRRLSVFRRYYGWAVREHRASADPTLRITSAKQ 124 Query: 167 KTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222 ++ ++ G+ + R E + SGLR S+ + N Sbjct: 125 GARFPSTLSEAQVEALLGAPDIGTPLGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEG 184 Query: 223 SIKTQKT-GTIITVELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSI 271 ++ V + + F+ M QF Sbjct: 185 VVRVMGKGSKERLVPFGEVAHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFWN 244 Query: 272 WFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 K A +A V + S H +R AT + GA + G + + YT A R Sbjct: 245 IIKRHAQQADVRAHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVA-RE 303 Query: 330 RL 331 RL Sbjct: 304 RL 305 >gi|325925497|ref|ZP_08186888.1| tyrosine recombinase XerD subunit [Xanthomonas perforans 91-118] gi|325544089|gb|EGD15481.1| tyrosine recombinase XerD subunit [Xanthomonas perforans 91-118] Length = 323 Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats. Identities = 46/312 (14%), Positives = 99/312 (31%), Gaps = 37/312 (11%) Query: 46 AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK 105 A L P + ++ ++ + + +A + S+ + + R Sbjct: 7 AERRQLARQLPPVQAADASV-----IERFLDRFWAE---QGVARQTLESYRRDLEGLARW 58 Query: 106 S-----GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 G + ++P S + L+++R + +R + +P Sbjct: 59 RDGAHGGLLGIDRAALFDYLRWRTQANYSPRSTARLLSTLRAFYGLCLRDGVRSDDPTTL 118 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQH 216 ++ P+ + T+ ++ + + + R E + +GLR S+ Sbjct: 119 IDPPQLPRSLPKALTESQIEALLAAPDVDTPAGLRDRAMLELMYAAGLRVSELVNLPAVG 178 Query: 217 LQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIG----------------KETFFINN 259 + ++ V L + L + FI+ Sbjct: 179 VNLRQGVLRVTGKGSKDRLVPLGEESQHWLERYLREARPLLAANTPVAAVDGQVPLFIDA 238 Query: 260 DKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTV 316 +Q ++ QF K A AG++ S HG+R AT + GA L G ++ Sbjct: 239 ARQPLSRQQFWALVKRYAAVAGIDPDTVSPHGLRHSFATHLLNHGADLRALQMLLGHSSL 298 Query: 317 DQAETYTKGADR 328 + YT A + Sbjct: 299 STTQIYTLVARQ 310 >gi|307546449|ref|YP_003898928.1| site-specific tyrosine recombinase XerD [Halomonas elongata DSM 2581] gi|307218473|emb|CBV43743.1| site-specific tyrosine recombinase XerD [Halomonas elongata DSM 2581] Length = 300 Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats. Identities = 38/287 (13%), Positives = 87/287 (30%), Gaps = 23/287 (8%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVES 125 LI + + N+ ++ + + + Sbjct: 8 SALIDAFLDGLWLERGASDNTLAAYRHDLNTWQARLAGLGATLLAPPPRALPDWLDERRE 67 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + S + L+S+R + WA+ + + +P ++ P+ + ++++ Sbjct: 68 AGYKLRSNARLLSSLRRFYHWALGEGRIEYDPLAEIKLPRVTPSLPNTLEEGEVERLLEA 127 Query: 186 WSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDG 240 + + R E L +GLR ++ L ++ + V L + Sbjct: 128 PDVDTELGLRDRAMLEVLYGAGLRVTELVGLTTDALNLRQGVVRVRGKGDKERLVPLGEE 187 Query: 241 FMKLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAGVNKS--AHG 288 + L++ + + + F KA A AG+++S H Sbjct: 188 AVDWLSLYLRSARGALMRDVTRPALFPGRGDACLTRQAFWYRIKAHARSAGIDRSLSPHT 247 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 +R AT + GA + G + + YT A + Sbjct: 248 LRHAFATHLLNHGANLRVVQLLLGHSDLSTTQIYTHVAQVRLEALHA 294 >gi|260173069|ref|ZP_05759481.1| integrase [Bacteroides sp. D2] gi|315921346|ref|ZP_07917586.1| integrase [Bacteroides sp. D2] gi|313695221|gb|EFS32056.1| integrase [Bacteroides sp. D2] Length = 319 Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats. Identities = 53/299 (17%), Positives = 104/299 (34%), Gaps = 29/299 (9%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG-------DFDYRKITTKHIRSGVES 125 +I +Y++ SL++N+ ++ + D+++ D + +G+ Sbjct: 16 IIRKYQQYLKLEKSLSLNTLDAYLTDLDKLMSFLTLEGINVLDVCLSDLQR--FAAGLHD 73 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 P S + L+ ++ F++ + + Y+ +P +E PK + T E++ + S Sbjct: 74 IGIHPRSQARILSGIKSFFRFLILENYLEADPSELLEGPKIGFKLPEVLTVEEIDRIISA 133 Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDG 240 EG + R E L GLR S+ + L + F K V + Sbjct: 134 VDRSKAEGQRNRAILETLYSCGLRVSELITLKLSDLYFDEGFIKVEGKGSKQRLVPISPR 193 Query: 241 FMKLLAMTPIGKETFFINNDKQKM-----------NATQFSIWFKAKATKAGVNK--SAH 287 + + + + + + + K A KAG+ K S H Sbjct: 194 AINEIKLYITDRNQIEVKKGHEDFVFVSQRRGKGLSRIMIFHMIKELAQKAGITKNISPH 253 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346 R AT + GA + G +++ E YT DR L + + Sbjct: 254 TFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTH-IDRNMLRSEIIEHHPRNIKYR 311 >gi|54307771|ref|YP_128791.1| site-specific tyrosine recombinase XerD [Photobacterium profundum SS9] gi|46912194|emb|CAG18989.1| putative integrase/recombinase XerD [Photobacterium profundum SS9] Length = 292 Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats. Identities = 43/279 (15%), Positives = 98/279 (35%), Gaps = 24/279 (8%) Query: 75 ISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRKH 128 I + + L+ N+ +S+ + ++ R S + YR +T + + + Sbjct: 2 IERFLDAMWMERGLSENTLMSYRNDLTKLRRWSDEKSYRLVTLSSDDLQRYQQWLFDADF 61 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +S + ++++R L+++ R++ +P + P+ + T+E + Sbjct: 62 KQTSRARMVSAIRRLYQYLYREKVRDDDPSSMMISPRLPKRLPKDLTEEQVGALLDAPDT 121 Query: 189 G----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMK 243 + + E L +GLR ++ +++ ++ K G V + + + Sbjct: 122 NNPIELRDKAMLELLYATGLRVTELVSLTMENTNLRQGVVRVLGKGGKERLVPMGENAID 181 Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290 + F + ++M F K A AG++ S H +R Sbjct: 182 WIEEFIDSGRPLLLGEKSSDVLFPSKRARQMTRQTFWHRIKYYAVIAGIDTDTLSPHVMR 241 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + GA + G + + YT A Sbjct: 242 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 280 >gi|169629452|ref|YP_001703101.1| site-specific tyrosine recombinase XerD [Mycobacterium abscessus ATCC 19977] gi|169241419|emb|CAM62447.1| Tyrosine recombinase XerD [Mycobacterium abscessus] Length = 315 Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats. Identities = 45/285 (15%), Positives = 92/285 (32%), Gaps = 36/285 (12%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSGVESRKH-- 128 I Y +A N+ S+ + + D ++ + V + + Sbjct: 12 IQSYLDHLDVERGVAANTLSSYRRDLRRYQQHLADRKIDRLAEVCETDVSDFVVTLRRGD 71 Query: 129 --------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + SSA + L ++R L ++A + + +V+ P + T E ++ Sbjct: 72 PANGVPELSASSAARALIAVRGLHRFAAIEGLAPTDVARAVKPPTPNRRLPKSLTVEQVE 131 Query: 181 QFKSFW-------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTI 232 + + R E L +G R S++ V + S+ K G Sbjct: 132 ALLNAAGGGGSDGPLDLRNRALLELLYSTGARISEAVGLDVDDVDVQARSVLLWGKGGKQ 191 Query: 233 ITVELPDGFMKLLAMTPIGKETF------------FINNDKQKMNATQFSIWFKAKATKA 280 V + ++ L + F+N+ +++ A +A Sbjct: 192 RLVPVGRPAVEALQAYLVRGRPDLARRGRGGVPALFLNSRGGRLSRQSAWQVLADAAERA 251 Query: 281 GVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 ++ S H +R AT + GA + G +V + YT Sbjct: 252 KISAAVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYT 296 >gi|89901430|ref|YP_523901.1| tyrosine recombinase XerD [Rhodoferax ferrireducens T118] gi|89346167|gb|ABD70370.1| tyrosine recombinase XerD subunit [Rhodoferax ferrireducens T118] Length = 306 Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats. Identities = 45/298 (15%), Positives = 96/298 (32%), Gaps = 31/298 (10%) Query: 70 TLKWLISE-YRKSAHWGSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVE 124 ++ I + + L+ N+ ++ + + + + Sbjct: 13 SIDAFIDALWLEE----GLSKNTLAAYRRDLTLYGAWLQPQHKALPATLEHDLNGYFAAQ 68 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 S+A + LT + F+WA+R+ ++ +P L ++ K+ + ++ ++ + Sbjct: 69 HSATKASTANRRLTVFKRYFRWALREHLISADPTLKLQAAKQALRVPKTLSEFQVEALLA 128 Query: 185 FWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----------- 229 E G + R E + SGLR S+ V ++ + ++ Sbjct: 129 APDEQTPLGVRDRTMLELMYASGLRVSELVTLKVFNVSLSDNVLRVFGKGNKERLVPFGE 188 Query: 230 ----GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--N 283 + + T T M+ F + K A AG+ Sbjct: 189 VASLWIKRYLAQARPELLAGKQTEDLFVTHRGATPGTAMSRVMFWMIVKKYALSAGITAP 248 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 S H +R AT + G + G + YT A R RL + +++ Sbjct: 249 LSPHTLRHAFATHLLNHGVDLRAVQMLLGHVDISTTTIYTHVA-RERLKVLHAQHHPR 305 >gi|251810683|ref|ZP_04825156.1| tyrosine recombinase XerC [Staphylococcus epidermidis BCM-HMP0060] gi|293366784|ref|ZP_06613460.1| tyrosine recombinase XerC [Staphylococcus epidermidis M23864:W2(grey)] gi|251805843|gb|EES58500.1| tyrosine recombinase XerC [Staphylococcus epidermidis BCM-HMP0060] gi|291319085|gb|EFE59455.1| tyrosine recombinase XerC [Staphylococcus epidermidis M23864:W2(grey)] Length = 286 Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats. Identities = 35/265 (13%), Positives = 93/265 (35%), Gaps = 20/265 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVESRKHTPSSAIQFLTS 139 + + + S+ Q + T ++ + + S + ++ + +++ Sbjct: 6 RNFSEYTLKSYHDDLVQFNNFLEREHLQLETFEYKDARNYLAFLYSNQLKRTTVSRKIST 65 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPRLA 195 +R +++ + Q+ INP + + PK++ + + +E+M Q + +G + ++ Sbjct: 66 LRTFYEFWMTQDNSIINPFVQLVHPKKEKYLPQFFYEEEMEALFQTVEHDNKKGIRDKVI 125 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254 E L +G+R S+ ++ + N K + + + + + Sbjct: 126 IELLYATGIRVSELINIKLKDIDMNLPGVKVLGKGNKERFIPFGEFCRQSIERYLEEFQP 185 Query: 255 FFINNDKQ--------KMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGATA 304 + N + + AGV + H +R AT + GA Sbjct: 186 KQLANHDYLIVNMKGDPITERGVRYVLNDVVKRTAGVNDIHPHKLRHTFATHLLNQGADL 245 Query: 305 HELMATYGWKTVDQAETYTKGADRI 329 + + G + YT +++ Sbjct: 246 RTVQSLLGHVNLSTTGRYTHVSNQQ 270 >gi|110807498|ref|YP_691018.1| site-specific tyrosine recombinase XerC [Shigella flexneri 5 str. 8401] gi|123342340|sp|Q0SZ02|XERC_SHIF8 RecName: Full=Tyrosine recombinase xerC gi|110617046|gb|ABF05713.1| tyrosine recombinase [Shigella flexneri 5 str. 8401] Length = 298 Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats. Identities = 43/278 (15%), Positives = 94/278 (33%), Gaps = 21/278 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESRKHTP 130 + Y + L+ + ++++ + ++G +++ +R+ +H Sbjct: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDAAMVRNFAVRSRHKG 67 Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +S L+++R F W V Q + NP V PK + +DM + Sbjct: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI 127 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243 + R E + +GLR S+ ++HL + K + + + Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187 Query: 244 LLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 + ++ F +D ++++A F K G+ + H +R A Sbjct: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 T ++ + G + + YT D L Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 284 >gi|91792109|ref|YP_561760.1| tyrosine recombinase XerD [Shewanella denitrificans OS217] gi|91714111|gb|ABE54037.1| Tyrosine recombinase XerD [Shewanella denitrificans OS217] Length = 303 Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats. Identities = 44/291 (15%), Positives = 92/291 (31%), Gaps = 28/291 (9%) Query: 66 KKPTTLKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKI-----TTKHI 119 K T +I + + L+ N+ S+ + R + T + Sbjct: 5 KSSVTADPIIDVFLDALWSSKGLSNNTLASYGTDLRHFQRYLAAQQLNLLDASQETVRQY 64 Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + + + SS+ + ++S+R + + + + +AI+PC + PK ++ ++ Sbjct: 65 LAWRQEQGFAKSSSARLMSSLRRFYAYWLSLKRIAIDPCAKLASPKLSRGLPAALSEAEV 124 Query: 180 QQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------ 229 S + + + E L +GLR ++ + + ++ Sbjct: 125 DALLSEPAADDPIEIRDKAMLELLYATGLRVTELVSLTMDQISLRQGLVRITGKGGKERL 184 Query: 230 -------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 + L +LL F K A +A + Sbjct: 185 VPLGELAVAEVDTYLSLARSELLKGKQSEVLFPSKRGTMM--TRQTFWHRIKHYALRASI 242 Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 S H +R AT + GA + G + + YT A + RL Sbjct: 243 ATELSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVA-KARL 292 >gi|15004784|ref|NP_149244.1| site-specific tyrosine recombinase XerC [Clostridium acetobutylicum ATCC 824] gi|14994396|gb|AAK76826.1|AE001438_79 Site-Specific Recombinase, Xerd [Clostridium acetobutylicum ATCC 824] Length = 323 Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats. Identities = 42/291 (14%), Positives = 88/291 (30%), Gaps = 41/291 (14%) Query: 85 GSLAVNSRISFESYFDQIIRKS------------GDFDYRKITTKHIRS----------- 121 + +R +++ +++ + D I I++ Sbjct: 16 KGKSKRTRNEYKNDLILMLKYIKVIKYDINTNGIENVDISDIDNDFIKAISLEDLYIFLE 75 Query: 122 -GVESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + R++ S + + ++R F + +++ + NP +E+PK T Sbjct: 76 YCEDERRNGAYSRARKVAAIRSFFNYLTTKKKILDYNPAQELEKPKLPKRNPVYLTIGQA 135 Query: 180 QQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 F S L G+R S+ C + ++N++ SI + Sbjct: 136 NTFLSGIKMNKHYYRNTCIVTLFLNCGMRVSELCNININSIKNDMISIIGKGDKERTVYL 195 Query: 237 LPDGFMKL---------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NK 284 + L ++ FI+ +++ K + + Sbjct: 196 NDMCIDAINKYIEKERSLQKNIKCQQALFISQKGTRISVRTIENLVKKINEDSKLNINKL 255 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIK 334 + H +R AT AG L G V + YT DR+R Sbjct: 256 TPHKLRHTFATTMYQAGTDIISLQQLLGHSNVSTTQIYTHVTDDRLREATN 306 >gi|322834929|ref|YP_004214956.1| tyrosine recombinase XerC [Rahnella sp. Y9602] gi|321170130|gb|ADW75829.1| tyrosine recombinase XerC [Rahnella sp. Y9602] Length = 303 Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats. Identities = 43/279 (15%), Positives = 93/279 (33%), Gaps = 21/279 (7%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIR---SGVESR 126 + + + H L+ + ++ + +I + G ++++ +R + + Sbjct: 11 AVEAFLRYLHVERQLSPLTTTNYSRQLEALIAISGEIGISHWQQLDAPKVRMLLARSKRA 70 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 PSS ++S+R W VRQ ++ NP + P+ + +++ + Sbjct: 71 GLGPSSLALRMSSLRSFLDWLVRQGVLSANPAKGISTPRSPKHLPKNLDVDEVNKLLDID 130 Query: 187 SEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFM 242 + R E + GLR S+ +H+ ++ K V + + Sbjct: 131 LNDPLSVRDRAMLEVMYGGGLRLSELVGIDCKHIDMASGEVRVLGKGSKERKVPIGRTAV 190 Query: 243 KLLAMTPIGKETFFINNDKQ-------KMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293 L + F +D +++A F K GV + H +R Sbjct: 191 IWLEHWLERRADFNPQDDAMFLSSKGSRISARNVQKRFAEWGVKQGVNSHIHPHKLRHSF 250 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 AT ++ + G + + YT D L Sbjct: 251 ATHVLESSGDLRAVQELLGHANLSTTQIYTH-LDFQHLA 288 >gi|193214605|ref|YP_001995804.1| integrase family protein [Chloroherpeton thalassium ATCC 35110] gi|193088082|gb|ACF13357.1| integrase family protein [Chloroherpeton thalassium ATCC 35110] Length = 289 Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats. Identities = 44/285 (15%), Positives = 101/285 (35%), Gaps = 22/285 (7%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK----HIRSGVESRK 127 + ++ Y+ + N++ + SYF G+ + K+TTK +I ++S+ Sbjct: 11 EEVLRRYKNLLIQKRYSQNTQDIYCSYFKDFCMYFGEEELEKLTTKQINSYILDLIKSKN 70 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + S Q + +++ F + + RP+++ + + +K +++ Sbjct: 71 ISISQQNQRINAVKFYF----EKVLGREKQYYELHRPRKENKLPKVLSKNEVKSILVST- 125 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247 + + + + +GLR S+ + + I L + Sbjct: 126 DNIKHKCILMLIYSAGLRRSELLNLKPTDIDSGRMLIHILGAKGKKDRISLLSENLLKLL 185 Query: 248 TPIGKETFFINNDKQ-----KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 KE + K + T + K + KAG++K + H +R AT + Sbjct: 186 RQYYKEFHPKKYLFEGLDGGKYSPTSVANILKKASLKAGIHKNVTPHMLRHSFATHLLEQ 245 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345 G + G ++ E YT + + +I + +D Sbjct: 246 GTDLRYIQELLGHESSKTTEIYTHVSKK------AIDKIKNPIDE 284 >gi|255065181|ref|ZP_05317036.1| tyrosine recombinase XerD [Neisseria sicca ATCC 29256] gi|255050602|gb|EET46066.1| tyrosine recombinase XerD [Neisseria sicca ATCC 29256] Length = 291 Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats. Identities = 46/275 (16%), Positives = 98/275 (35%), Gaps = 19/275 (6%) Query: 72 KWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKH 128 LI + +S L+ N+ + ++I + G + + V + Sbjct: 3 DELIDKLLESLWLQDRLSHNTLQGYRRDLEKIAARLEAGGHTWLDAEAADLADAVYAADE 62 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-- 186 SS + L++ + L+ W E NP ++ PK+ + T+ ++ + Sbjct: 63 KHSSQARALSACKRLYAWLEETERRTDNPTRFLKAPKQTQKLPTLITEAQIENLLAAPDT 122 Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-----------TQKTGTII 233 G + + E + +GLR +++ + + L N I+ + Sbjct: 123 DTPHGLRDKALLEVMYATGLRVTEAVKLQLGDLDLNRGCIRTIGKGDKLRIVPMGEEAVY 182 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKF 292 VE + L + + F++ + ++ + K A AG+ S HG+R Sbjct: 183 WVERYCAESRPLLLKNKICDEVFVSQKRSGISRQLAWMIVKNYAEAAGITSLSPHGLRHA 242 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 AT + G + G ++ + YT A+ Sbjct: 243 FATHLVNHGVDLRAVQLMLGHANINTTQIYTHVAN 277 >gi|311281510|ref|YP_003943741.1| tyrosine recombinase XerC [Enterobacter cloacae SCF1] gi|308750705|gb|ADO50457.1| tyrosine recombinase XerC [Enterobacter cloacae SCF1] Length = 300 Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats. Identities = 46/282 (16%), Positives = 97/282 (34%), Gaps = 21/282 (7%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKI---TTKHIRSG---V 123 L + + + L+ + +++ D I+ +G+ IRS Sbjct: 6 LSAAVERFLRYLGVERQLSPITLLNYRRQLDAIMTLAGESGVASWQQCDAAVIRSWAVRS 65 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + P+S L+++R F W V Q ++ NP +V PK + +D+ + Sbjct: 66 RRKGLGPASLALRLSALRSFFDWLVSQGELSANPAKAVSAPKAPRHLPKNIDVDDVNRLL 125 Query: 184 SFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIIT----- 234 + R E + +GLR S+ ++HL + K Sbjct: 126 DIDLNDPLAVRDRAMLEVMYGAGLRLSELVNLDLRHLSLESGEVWVMGKGSKERRLPIGR 185 Query: 235 --VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290 V+ + ++ L + + F++ ++++ F K G+ + + H +R Sbjct: 186 SAVQWVEHWLDLRGLFGAEDDALFLSKLGKRISTRNVQKRFAEWGIKQGLNSHVNPHKLR 245 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 AT ++ + G + + YT D L Sbjct: 246 HSFATHMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 286 >gi|239946786|ref|ZP_04698539.1| tyrosine recombinase XerC [Rickettsia endosymbiont of Ixodes scapularis] gi|239921062|gb|EER21086.1| tyrosine recombinase XerC [Rickettsia endosymbiont of Ixodes scapularis] Length = 305 Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats. Identities = 45/287 (15%), Positives = 100/287 (34%), Gaps = 28/287 (9%) Query: 68 PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRS 121 +++ LI++++K + + ++ IS+ + + I T IR Sbjct: 3 DISIQELINKWQKYLVLQRNCSNHTVISYNNDLKHFLEFMNYYNSELVTINHIKTADIRL 62 Query: 122 GVESRK------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 T SS + L++++ +++ + + + S++ PK+ + + Sbjct: 63 IRSWLAKRNCNNFTTSSISRGLSAVKNFYRFLEKTTQLNSHIIFSIKSPKKTKLLPKALS 122 Query: 176 KEDMQQFKSFW-------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228 ++D+ + + + SGLR S++ HLQN F K Sbjct: 123 EDDVVISLEHIEEYGNVKWVELRNKALLVLIYASGLRISEALSITKLHLQNLEFIRIIGK 182 Query: 229 TGTIITVEL-------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 + ++++L E F +K+ F+ G Sbjct: 183 GSKERIIPWLPITKNLITKYLEILPYKLGDNEPIFRGKQGKKLQPPVFNRELIKLKHFYG 242 Query: 282 VN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 + +AH R A+ + GA + G K++ + YTK + Sbjct: 243 LPQHLTAHSFRHSFASHLLEHGADLRSIQELLGHKSLSTTQNYTKTS 289 >gi|152994022|ref|YP_001359743.1| phage integrase family site specific recombinase [Sulfurovum sp. NBC37-1] gi|151425883|dbj|BAF73386.1| site-specific recombinase, phage integrase family [Sulfurovum sp. NBC37-1] Length = 366 Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats. Identities = 56/349 (16%), Positives = 104/349 (29%), Gaps = 30/349 (8%) Query: 4 SLRLPPFVTKERTRHGK--IIYYFRKGHGRRIR--LPYPHESTFIPAY--MSALTGSTPK 57 R + E T + K +YY R ++R + Y L Sbjct: 6 KTRYKNVIYLETTTNNKPDKVYYIRYRENGKLREIKVGKYSEGIRENYCNQKLLETVNAI 65 Query: 58 REYINSP------RKKPTTLKWLISEYRKSAHWGSLA-VNSRISFESYFDQIIRKSGDFD 110 R P ++K T ++++Y KS + ++ ++S G D Sbjct: 66 RLGEQPPIINATHKRKIVTFDEIVTKYFKSKELHNKTNEQTKNRYKSQLK---EYIGSKD 122 Query: 111 YRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRK 167 IT I + + P + Q++ ++ ++ +A+ + +NP ++ K Sbjct: 123 IYSITKNDILAIQTDMAQSRAPKTVNQYIQFIKAVYNYAIAEDLFSGVNPVKGIKEQKID 182 Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227 + R + ++++ E L L +G R + L N I Sbjct: 183 NKRERFLSIDEIKALIEEVKENEDLYLFTLLSLSTGGRLGTIMAIAKKDLDFNNNMITLN 242 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA---GVN- 283 T L + N+ MN TK G++ Sbjct: 243 DIKNEDTYGGFFDNT-LKEILIKRTANLKPNDKLIVMNERTLRRQLSKVLTKLFNVGIDA 301 Query: 284 ------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 H +R A+ A G + K + Q Y K A Sbjct: 302 DDRKNRVVIHTLRHTFASQLAIKGTPIFTIQKLLNHKDIKQTLRYAKLA 350 >gi|229544386|ref|ZP_04433444.1| tyrosine recombinase XerC [Bacillus coagulans 36D1] gi|229324871|gb|EEN90548.1| tyrosine recombinase XerC [Bacillus coagulans 36D1] Length = 300 Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats. Identities = 37/265 (13%), Positives = 85/265 (32%), Gaps = 24/265 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLT 138 + + + + + + + + + ++ ++ + ++ Sbjct: 20 KNYSAYTIKFYRLDLEDFFAFLTAQGIASLDEVGYPAGRLYLTMLHEHGYSRATVARKIS 79 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194 S+R FK+ +R+ V NP + +PK+ + + +E+M+Q + + R Sbjct: 80 SIRSFFKFLMRERIVKENPFALLSQPKQHKRLPKFFYEEEMEQLFAACEGDDALSRRNRA 139 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------------IITVELPDGFM 242 E L +G+R S+ +Q + +I + G + Sbjct: 140 LLEILYATGIRVSECVNIRLQDIDFEFETIHVKGKGKKERIVLFGHFAGEAVSDYMAHAR 199 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300 K L F+N + KA + H +R AT + Sbjct: 200 KTLMRGKEDHPYLFVNARGGALTDKGVRYILNEMIKKAALTGKIHPHMLRHTFATHLLNH 259 Query: 301 GATAHELMATYGWKTVDQAETYTKG 325 GA + G +++ + YT Sbjct: 260 GADLRTVQDLLGHESLSSTQVYTHV 284 >gi|121593407|ref|YP_985303.1| tyrosine recombinase XerD [Acidovorax sp. JS42] gi|222110117|ref|YP_002552381.1| tyrosine recombinase xerd [Acidovorax ebreus TPSY] gi|120605487|gb|ABM41227.1| tyrosine recombinase XerD [Acidovorax sp. JS42] gi|221729561|gb|ACM32381.1| tyrosine recombinase XerD [Acidovorax ebreus TPSY] Length = 303 Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats. Identities = 47/273 (17%), Positives = 88/273 (32%), Gaps = 23/273 (8%) Query: 86 SLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRK--HTPSSAIQFLTS 139 L+ N+ ++ + H++ +R +SA + LT Sbjct: 25 GLSRNTLAAYRRDLTLYAQWLAQQNPPLALDATAEHHLQGYFAARHAQTRATSANRRLTV 84 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLA 195 +R F WA+R+ +A +P + ++ ++ + T+ ++ G + R Sbjct: 85 LRRYFHWALRERRIAADPTVRLQAARQPLRVPKTLTQAQVEALLHAPDDATPLGLRDRTM 144 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLLAMT------ 248 E + SGLR S+ HL ++ G V + + L Sbjct: 145 LELMYASGLRVSELVTLKTFHLGLAEGVLRVMGKGGKERLVPFGEEAHRWLQRYLAEGRG 204 Query: 249 ----PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302 + F+ M+ F + K A AG+ S H +R AT + GA Sbjct: 205 AILGGQQTDDLFVTQRGAAMSRVMFWVIVKKCAQAAGITAPLSPHTLRHAFATHLLNHGA 264 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 + G + YT A + Sbjct: 265 DLRVVQLLLGHADISTTTIYTHVARERLKALHA 297 >gi|88705495|ref|ZP_01103205.1| site-specific recombinase [Congregibacter litoralis KT71] gi|88700008|gb|EAQ97117.1| site-specific recombinase [Congregibacter litoralis KT71] Length = 312 Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats. Identities = 40/277 (14%), Positives = 93/277 (33%), Gaps = 24/277 (8%) Query: 77 EYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFDYRKITTKHIRSGVE---SRKHTP 130 EY +S L+ ++ +++ D ++ H+R + R P Sbjct: 20 EYLRSV--RRLSPHTVAAYQRDLGSFRAFCDAQSLQDCDEVQESHVRQWLAQGHRRSLAP 77 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 +S + L+++R F+W NP L+V+ P+++ + + + + +E Sbjct: 78 NSLQRQLSALRAYFEWESSDTGRRRNPALAVQAPRKRRKLPGTLEADQVGVYLRADAEDP 137 Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLA 246 + E SGLR + + + T K TV + + + Sbjct: 138 LQLRDLAMAELFYSSGLRLGELRAVNLYDIDRGQSLISVTGKGSKTRTVPVGSAAIAAID 197 Query: 247 MTPIGKETFFINNDK---------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSAT 295 + ++D+ ++++ + A + G+ + H +R A+ Sbjct: 198 AYLPHRPAAVSDDDQEALFLSSRGRRISERSIQSRVQLLAERNGLGRDVHPHMLRHSFAS 257 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 ++ + G + + YT D L Sbjct: 258 HLLESSGDLRAVQELLGHSDISTTQIYTH-LDFQHLA 293 >gi|319646005|ref|ZP_08000235.1| tyrosine recombinase xerC [Bacillus sp. BT1B_CT2] gi|317391755|gb|EFV72552.1| tyrosine recombinase xerC [Bacillus sp. BT1B_CT2] Length = 305 Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats. Identities = 42/278 (15%), Positives = 91/278 (32%), Gaps = 27/278 (9%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSG---VESRK 127 L EY + + + + + + S + R G + +T +R + Sbjct: 11 LFIEYLQIE--KNYSKYTIVGYISSIEDFERFLHVQGIKGFEDVTYPDVRIFLTEAHEKG 68 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFK 183 T + + ++++R +K+ +R++ V NP L V PK+ + +++ + Sbjct: 69 LTRRTISKKISALRSFYKFLLREKLVKENPFLLVSLPKQDKRIPKFLYEKELEELFEVSD 128 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFM 242 G + + EFL +G+R S+ C L + ++ K + Sbjct: 129 LSTPLGQRNQALLEFLYATGMRVSELCSLKESDLDLFLDTVLVHGKGRKQRYIPFGSFAR 188 Query: 243 KLLAMTPIG------------KETFFINNDKQKMNATQFSIWFKAKATKAG--VNKSAHG 288 + L + F+N + K ++ H Sbjct: 189 EALDLYLQNGRRILLLKAKEPCPFIFLNQRGGPLTPRGVRYILGELVKKTSGTLHIHPHM 248 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 +R AT + GA + G + + YT + Sbjct: 249 LRHTFATHLLNEGADLRSVQELLGHSNLSSTQVYTHVS 286 >gi|213691797|ref|YP_002322383.1| tyrosine recombinase XerD [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213523258|gb|ACJ52005.1| tyrosine recombinase XerD [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320457891|dbj|BAJ68512.1| recombinase [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 308 Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats. Identities = 45/288 (15%), Positives = 95/288 (32%), Gaps = 32/288 (11%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126 L ++ LA + ++ES + I G + IT + + + + Sbjct: 5 FTRLTEQFLVHIGVERGLATATVTAYESDIAKYIDWLETRGIHEPDAITKQDVEDYIAAL 64 Query: 127 KHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 SA + L S+ ++A+ Q V + +V+ PK + T +++ + Sbjct: 65 DQAGESARSKARRLASIHEFHRFALGQHAVTADVSAAVKAPKGASTLPDVLTVDEVTRLL 124 Query: 184 SFWSEG-------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITV 235 + G + + EF+ +G R S++ + + + + K V Sbjct: 125 DTAAVGGSTDPVVLRDKALLEFMYATGCRVSEATGTNLDDIDLDEHIARLMGKGSKQRLV 184 Query: 236 ELPDGFMKLLAMT---------------PIGKETFFINNDKQKMNATQFSIWFKAKATKA 280 L + + + F+N ++++ KA +A Sbjct: 185 PLGSYACRAITAYLNAGRGELERRSSAKIPERRALFLNKRGKRISRQSVWEIVKATGERA 244 Query: 281 GV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 G+ H +R AT GA + G +V + YT + Sbjct: 245 GITKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVS 292 >gi|320161519|ref|YP_004174743.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1] gi|319995372|dbj|BAJ64143.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1] Length = 300 Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats. Identities = 51/279 (18%), Positives = 99/279 (35%), Gaps = 22/279 (7%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 L + I E+ + L+ + + +E+ + R+ GDFD I K I + S + Sbjct: 4 LSYCIDEFLEFKRAQRLSRWTLLDYETVLRRFNREIGDFDIDHIERKTIAHYLASLDLSK 63 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ--------- 181 T++ L+ WAV Y ++ ++ PK + I P+T++ + Sbjct: 64 KRVKNIYTALSSLWTWAVEMGYCTVHIIRQIKPPKPEKRPILPFTRDQIMNMLASTDASK 123 Query: 182 ---------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 ++ G + R LL +G+R S+ C V+ ++ + I + + Sbjct: 124 EYTRPGKRACRNRLKTGVRDRAIILLLLDTGIRASELCGIKVKDIKPHGIYIHGKGSKDR 183 Query: 233 ---ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHG 288 I+ + ++ F ++ + + +AGV + H Sbjct: 184 LVPISETTRSALCDYIGEQKDIEKYVFKTEQGNVLSRDALRLIIRRIGDRAGVNDAHPHR 243 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 R A G L A G +T+D Y A Sbjct: 244 FRHTFAINFLRNGGDVFTLQAILGHETLDMVRRYLAIAQ 282 >gi|259047877|ref|ZP_05738278.1| phage integrase family site-specific recombinase [Granulicatella adiacens ATCC 49175] gi|259035554|gb|EEW36809.1| phage integrase family site-specific recombinase [Granulicatella adiacens ATCC 49175] Length = 393 Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats. Identities = 56/358 (15%), Positives = 117/358 (32%), Gaps = 32/358 (8%) Query: 4 SLRLPPFVTKERTRHGKIIYYFR--KGHGRRIRLPYPHESTFIP---AYMSALTGSTPKR 58 R+ + + ++G++ Y F+ G + A +AL + Sbjct: 3 KKRIDDRIKPYKKKNGQVYYQFKIYYGTNPKTGKKQYTTRRGFESVLAATTALQRLEVEL 62 Query: 59 EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNS-RISFESYFDQIIRKSGDFDYRKITTK 117 K+ T + L +E+ + + ++ + + + I+ GD+ IT + Sbjct: 63 MDTGLVVKQKFTYRELYNEWLVTYQ-KRVRPSTFQATVTYFKKHILPAFGDYYIDTITIQ 121 Query: 118 HIRSGVESRKHT-PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 ++ V P S + +++FK+A + + NP V+ PK Sbjct: 122 DCQAQVNRWYSNYPKSTQSYKIYAQMIFKYAQKLNLIEKNPMSLVDLPKSGDFKDDKLKY 181 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLL---YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI- 232 D + F + + F Y+GLRC ++ + SI KT Sbjct: 182 YDRETLIRFLEYIEPFKEVYTFFYLLSYTGLRCGEAFALTWNDIDFRNHSISVNKTVARS 241 Query: 233 ---------------ITVELPDGFMKLLAMTPI---GKETFFINNDKQKMNATQFSIWFK 274 T+ + +L++ + F N + ++ W Sbjct: 242 MEDKYISQTKTKNGMRTIRINGSLERLISEWKELSGNETYVFQNRNNSFYSSNTAVYWLN 301 Query: 275 AKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330 + + HG R A++ A+AGA ++ G + YT + + Sbjct: 302 QILEGTNFPRITPHGFRHTHASLLAEAGADLKDIQDRLGHGDIQTTANIYTHVTNNKK 359 >gi|254440821|ref|ZP_05054314.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 307] gi|198250899|gb|EDY75214.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 307] Length = 319 Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats. Identities = 40/289 (13%), Positives = 89/289 (30%), Gaps = 29/289 (10%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSG 122 + ++ A N+ ++++ + G +IT +R+ Sbjct: 7 SSALGDWLDHKRALNGAASNTITAYQTDLLGFLNFMTSYYSGAQGLGPISRITVSDMRAW 66 Query: 123 VESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + S + +A + L++++ ++W +E LS PK + + RP + Sbjct: 67 MASERSRGVAARSLARSLSAVKSFYRWLADREGFEPTAVLSTRSPKFQKKLPRPLAVDAA 126 Query: 180 QQFKSF-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 + ++ L GLR S++ + K G Sbjct: 127 RAMIDTVQLQAGEPWIAARDMAVVTLLYGCGLRISEALGLIPADVPLPATLRIIGKGGKE 186 Query: 233 ITVELP-------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285 V + + +++ + F + + I + G+ + Sbjct: 187 RLVPVIPAARTAVNAYLEACPHPMDADQPIFRGSRGGPLYPRAIQIVMANARMQLGLPAT 246 Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R AT +AG + G ++ + YT D RL Sbjct: 247 ATPHAMRHSFATHLLNAGGDLRSIQELLGHASLSTTQAYT-AVDTARLM 294 >gi|281357729|ref|ZP_06244215.1| tyrosine recombinase XerD [Victivallis vadensis ATCC BAA-548] gi|281315676|gb|EFA99703.1| tyrosine recombinase XerD [Victivallis vadensis ATCC BAA-548] Length = 299 Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats. Identities = 44/286 (15%), Positives = 98/286 (34%), Gaps = 29/286 (10%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTP 130 L +Y + L+ N+ ++ S ++ G ++ ++ + I +++ + Sbjct: 8 LFIDYLVTE--RGLSSNTTAAYRSDLEEFRDWLTERGFKEWSQVDREAILDYLDAERDLG 65 Query: 131 S---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + + L ++++L ++ + + + ++ PK ++ ++ F + Sbjct: 66 RETATLARRLVAVKMLSRFLTEEGILKKDVTAVMDSPKLWRILPDFLSEAEVDAFLKAFP 125 Query: 188 EG------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---------- 231 + R E L SGLR S+ R + + + ++ G+ Sbjct: 126 ASVKEPFEMRNRAILEVLYSSGLRVSELARLPLTAVDFDNELLRVVGKGSKTRIVPIGKV 185 Query: 232 --IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287 LLA F++ + +N K A +AG++K H Sbjct: 186 ALRTLRRYLADVRPLLAEKNPRSPYVFLSKSGRPLNREWIWNVVKVAAARAGIHKNIHPH 245 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 +R A+ GA + G + E YT D RL Sbjct: 246 TLRHSFASHLLAHGADLRVIQEMLGHADISTTEIYTH-IDSNRLAA 290 >gi|171320434|ref|ZP_02909468.1| tyrosine recombinase XerD [Burkholderia ambifaria MEX-5] gi|171094319|gb|EDT39392.1| tyrosine recombinase XerD [Burkholderia ambifaria MEX-5] Length = 320 Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats. Identities = 47/288 (16%), Positives = 90/288 (31%), Gaps = 27/288 (9%) Query: 66 KKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSG---DFDYRKITTKHIRS 121 ++ + + LA N+ ++ + D + Sbjct: 27 ASRASIDVFCDALWLEH----GLARNTLDAYRRDLVLFSQWLAATHDVPLDSADEAMLIG 82 Query: 122 GVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + +R +S+ + L+ R + WAVR+ + + +P L + K+ ++ ++ Sbjct: 83 YIAARSDGKATSSNRRLSVFRRYYGWAVREHHASADPTLRITSAKQAARFPSTLSEAQVE 142 Query: 181 QFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITV 235 G+ + R E + SGLR S+ + N ++ V Sbjct: 143 ALLGAPDIGTPLGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGSKERLV 202 Query: 236 ELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--N 283 + + F+ M QF K A +A V + Sbjct: 203 PFGEVAHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHARQADVRAH 262 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 S H +R AT + GA + G + + YT A R RL Sbjct: 263 LSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVA-RERL 309 >gi|317504008|ref|ZP_07962015.1| tyrosine recombinase XerD [Prevotella salivae DSM 15606] gi|315664868|gb|EFV04528.1| tyrosine recombinase XerD [Prevotella salivae DSM 15606] Length = 293 Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats. Identities = 41/275 (14%), Positives = 95/275 (34%), Gaps = 24/275 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKHT 129 I+E+ + + + + ++ G+ D ++ + + IR +ES Sbjct: 3 INEFLNYLKFERNRSDLTIKNYGEDLRAFEEFYGNLDSRLSWKSVDSDVIRDWMESMMDK 62 Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 +S + L+++R +++A+ ++ V NP V PK+ + + +M + Sbjct: 63 GNNATSINRRLSALRSFYRFALTRKLVDKNPVHGVTGPKKGRPLPQFLKENEMDRLLDAE 122 Query: 187 -----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDG 240 E + R +G+R S+ + + T K + + Sbjct: 123 SWTESFEDVRDRTVIMTFYETGIRLSELIGLDDSMVDFSNRQLKVTGKRNKQRVIPFGEE 182 Query: 241 FMKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKAG--VNKSAHGVR 290 + L ++ + Q+M ++Q K +K ++ H +R Sbjct: 183 LLVTLRDYMKCRDKEVNRQSEALFVSTKGQRMTSSQVREGVKRNLSKVCTLKKRTPHVLR 242 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 AT + A + G +++ E YT Sbjct: 243 HTFATAMLNNKAGIESVKKLLGHESLSTTEIYTHT 277 >gi|296454370|ref|YP_003661513.1| tyrosine recombinase XerD [Bifidobacterium longum subsp. longum JDM301] gi|296183801|gb|ADH00683.1| tyrosine recombinase XerD [Bifidobacterium longum subsp. longum JDM301] Length = 308 Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats. Identities = 46/288 (15%), Positives = 96/288 (33%), Gaps = 32/288 (11%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126 L ++ LA + ++ES + I G + IT + + + + Sbjct: 5 FTRLTEQFLIHIGVERGLATATVTAYESDIAKYIDWLETRGIHEPDAITKQDVEDYIAAL 64 Query: 127 KHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 SA + L S+ ++A+ Q V + +V+ PK + T +++ + Sbjct: 65 DQAGESARSKARRLASIHEFHRFALGQHAVTADVSAAVKAPKGASTLPDVLTVDEVTRLL 124 Query: 184 SFWSEG-------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITV 235 + G + + EF+ +G R S++ A + + + + K V Sbjct: 125 DTAAVGGSTDPVVLRDKALLEFMYATGCRVSEATGANLDDIDLDEHIARLMGKGSKQRLV 184 Query: 236 ELPDGFMKLLAMT---------------PIGKETFFINNDKQKMNATQFSIWFKAKATKA 280 L + + + F+N ++++ KA +A Sbjct: 185 PLGSYACRAITAYLNAGRGELERRSSAKIPERRALFLNKRGKRISRQSVWEIVKATGERA 244 Query: 281 GV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 G+ H +R AT GA + G +V + YT + Sbjct: 245 GITKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVS 292 >gi|21957074|gb|AAM83976.1|AE013639_5 site-specific recombinase [Yersinia pestis KIM 10] Length = 308 Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats. Identities = 46/278 (16%), Positives = 90/278 (32%), Gaps = 21/278 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGVESRKHTP 130 + + + L+ + S+ ++ + G ++ + +RS V K Sbjct: 17 VEAFLRYLSIERQLSPLTVTSYRRQLSALMEIGEQMGLAHWQTLDAAQVRSLVSRSKRAG 76 Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 SS L+++R W V Q + NP V P+ + +++ + S Sbjct: 77 LHASSLALRLSALRSFLNWLVSQGVLPANPAKGVSTPRSGRHLPKNIDVDEVNKLLSIDL 136 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243 + R E + +GLR S+ +H+ + K V L + Sbjct: 137 NDPLAVRDRAMLEVMYGAGLRLSELVGMNCKHVDLASGDVWVMGKGSKERKVPLGKTAVT 196 Query: 244 LLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 L + F+ N ++++A F K GV + H +R A Sbjct: 197 WLQHWLALRELFEPQDDAIFLANTGKRISARNVQKRFAEWGVKQGVSSHIHPHKLRHSFA 256 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 T ++ + G + + YT D L Sbjct: 257 THMLESSGDLRAVQELLGHANLTTTQIYTH-LDFQHLA 293 >gi|34223075|sp|Q9KJF6|XERC_STAAU RecName: Full=Tyrosine recombinase xerC gi|9622622|gb|AAF89877.1| putative site-specific recombinase XerC [Staphylococcus aureus] Length = 298 Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 36/276 (13%), Positives = 89/276 (32%), Gaps = 23/276 (8%) Query: 76 SEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH------ 128 + + + + ++ S++ Q + ++ T R + Sbjct: 6 EAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLEQEHL-QLNTFEYRDARNYLSYLYLNHL 64 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +S + ++++R L+++ + + INP + + PK++ + +E+M+ + + Sbjct: 65 KRTSVSRKISTLRTLYEYWMTLDENIINPFVHLVHPKKEKYLPQFSLEEEMEALFTTVEK 124 Query: 189 GS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMK 243 + + R+ E L +G+R S+ Q + K V + Sbjct: 125 DTSKNLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVLGKGSKERFVPFGAYCRQ 184 Query: 244 LLAMTPIGKETFFINNDKQ--------KMNATQFSIWFKAKATK-AGV-NKSAHGVRKFS 293 + + N + + AGV H +R Sbjct: 185 SIENYLEHFKPIQSCNHDFLILNMKGEAITERGVRYVLNDIVKRTAGVSEIHPHKLRHTF 244 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + GA + + G + YT +++ Sbjct: 245 ATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQ 280 >gi|162147966|ref|YP_001602427.1| putative tyrosine recombinase xerD [Gluconacetobacter diazotrophicus PAl 5] gi|209542583|ref|YP_002274812.1| integrase family protein [Gluconacetobacter diazotrophicus PAl 5] gi|161786543|emb|CAP56125.1| putative tyrosine recombinase xerD [Gluconacetobacter diazotrophicus PAl 5] gi|209530260|gb|ACI50197.1| integrase family protein [Gluconacetobacter diazotrophicus PAl 5] Length = 304 Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats. Identities = 44/298 (14%), Positives = 87/298 (29%), Gaps = 26/298 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKH--- 128 + + A N+ ++ D + + +R + S Sbjct: 5 AEAFLEMLAAERGAAANTLKAYGRDLDDFAAHARQAGRSLHDADSALLRDYMGSLARAGL 64 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +P + + L+ ++ + R+ NP ++ P+ R T++++ + Sbjct: 65 SPRTQARRLSCLKQFHLFLAREGVRQDNPAELLDTPRLPATLPRFLTEDEVDALLAACVP 124 Query: 189 GSQ---------PRLAFEFLLYSGLRCS-------DSCRAGVQHLQNNIFSIKTQKTGTI 232 R A E L SGLR S Q L + + Sbjct: 125 PPDGGAARRWLVARAALEMLYASGLRISELLALPRRGLGRDAQMLMVRGKGGRERLVPLS 184 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289 + F + + F A +AG++ S H + Sbjct: 185 AAARAAAEALIAHDGPRRSPYLFPGRAPDRPLTRQGFDRILHDVALRAGLDPARLSPHVL 244 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKNSRRISSVVDSD 346 R AT GA L G + + YT A+R+R ++ ++ D + Sbjct: 245 RHSFATHMLARGADLRALQVLLGHADIATTQIYTHVLAERLRQAVEAYHPLARGGDGE 302 >gi|254293147|ref|YP_003059170.1| integrase family protein [Hirschia baltica ATCC 49814] gi|254041678|gb|ACT58473.1| integrase family protein [Hirschia baltica ATCC 49814] Length = 308 Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats. Identities = 44/297 (14%), Positives = 91/297 (30%), Gaps = 30/297 (10%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKHT 129 + + + + N+ ++ D ++SR Sbjct: 10 VDAFLEMMSASRGASQNTLDAYRRDLSDASEFLADKGGLVGANSENLSAYMRDLDSRGMA 69 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---- 185 S+A + L+S++ FK+ + + +P ++ P+ +KE++ + Sbjct: 70 KSTAARRLSSLKSFFKFELEEGEREDDPTSRLDGPQIIRNIPDVLSKEEVVALINAADGD 129 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--IKTQKTGTIITVELPDGFMK 243 + R E L +GLR S++C + L + I K L Sbjct: 130 EPSDIRDRCILELLYSAGLRASEACELPMSSLPRGKDTALIIRGKGDKDRLTPLGKPARD 189 Query: 244 LLAMTPI---------------GKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKS 285 L K F + + + ATKA + + Sbjct: 190 ALEQWFSVREKFLPKNETRKIADKYVFPSRGKTGHFTRRRLAQILENLATKAAISPKRVT 249 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKNSRRISS 341 H +R AT GA + G + + YT D ++ ++ + +S+ Sbjct: 250 PHALRHAFATHLLSGGADLRAVQMLLGHADISTTQIYTHVMTDELQKLLEAAHPLSN 306 >gi|325511227|gb|ADZ22862.1| site-specific tyrosine recombinase XerC [Clostridium acetobutylicum EA 2018] Length = 326 Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats. Identities = 42/291 (14%), Positives = 88/291 (30%), Gaps = 41/291 (14%) Query: 85 GSLAVNSRISFESYFDQIIRKS------------GDFDYRKITTKHIRS----------- 121 + +R +++ +++ + D I I++ Sbjct: 19 KGKSKRTRNEYKNDLILMLKYIKVIKYDINTNGIENVDISDIDNDFIKAISLEDLYIFLE 78 Query: 122 -GVESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + R++ S + + ++R F + +++ + NP +E+PK T Sbjct: 79 YCEDERRNGAYSRARKVAAIRSFFNYLTTKKKILDYNPAQELEKPKLPKRNPVYLTIGQA 138 Query: 180 QQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 F S L G+R S+ C + ++N++ SI + Sbjct: 139 NTFLSGIKMNKHYYRNTCIVTLFLNCGMRVSELCNININSIKNDMISIIGKGDKERTVYL 198 Query: 237 LPDGFMKL---------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NK 284 + L ++ FI+ +++ K + + Sbjct: 199 NDMCIDAINKYIEKERSLQKNIKCQQALFISQKGTRISVRTIENLVKKINEDSKLNINKL 258 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIK 334 + H +R AT AG L G V + YT DR+R Sbjct: 259 TPHKLRHTFATTMYQAGTDIISLQQLLGHSNVSTTQIYTHVTDDRLREATN 309 >gi|282892593|ref|ZP_06300866.1| hypothetical protein pah_c272o032 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281497717|gb|EFB40086.1| hypothetical protein pah_c272o032 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 369 Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats. Identities = 49/341 (14%), Positives = 109/341 (31%), Gaps = 22/341 (6%) Query: 10 FVTKERTRHGKIIYYFRKG--HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67 + K ++ + Y + G + + + + Sbjct: 6 GIQKRISKKNVVSYRVQIRESDGFPPKSKTFPTLQEAKDWQKQEKARRRQGYGSSDLMTG 65 Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR- 126 TL LI Y + + + D K G + KI++ I + Sbjct: 66 KKTLIDLIDRYETIILPT--KPKDARNMKRHLDWWRNKIGKYGLTKISSDLIAQCRQELA 123 Query: 127 --------KHTPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKE 177 K + ++ ++L ++ +F + + + ++ NPC V + R + Sbjct: 124 EGVTSKKTKRSHATVNRYLATLSTVFTYGINECGWITDNPCRRVSKFTESKGRDRIVAEN 183 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTII 233 + + L +L +G+R + + + +I K K G Sbjct: 184 EFTRLFEECKNSRNEHLLPVVVLAVTTGMRRGEILGLTWDCINLDRQTIILKETKNGKQR 243 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDK--QKMNATQFSIWFKAKATKAGV-NKSAHGVR 290 TV + ++LL + ++ + +AG+ N H +R Sbjct: 244 TVSIVGEALELLRSHYQKRNPNTPYVFPAKKRFGKICIRKAWDEALKRAGIQNLRIHDLR 303 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 T +++ GA+ EL A G +T+ YT ++ ++ Sbjct: 304 HTFCTYASETGASILELAAAMGHQTLQMVNRYTH-MNQKKI 343 >gi|118581964|ref|YP_903214.1| phage integrase family protein [Pelobacter propionicus DSM 2379] gi|118504674|gb|ABL01157.1| phage integrase family protein [Pelobacter propionicus DSM 2379] Length = 402 Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats. Identities = 51/358 (14%), Positives = 117/358 (32%), Gaps = 31/358 (8%) Query: 10 FVTKERTRHGKIIYYFRKGHGRRI---RLPYPHESTFIPAY-----MSALTGSTPKREYI 61 + +++G+ + R + R L + A AL Sbjct: 43 GLHLRVSKNGRRFFQHRYRYLGRKMCLSLGEFPAVSVQDARSRVAEHKALLARDKDPAAE 102 Query: 62 NSPRKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHI 119 + T + ++ Y A + ++ ++ G + IT + + Sbjct: 103 RGKVRADLTFEEFSTQHYLPHAKAHKQ---TWDDDKNQIERRLNPILGKLRLQAITPRDV 159 Query: 120 RSGV--ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 E + T +A L +++ + AV+ + NP E+ K R +KE Sbjct: 160 AMVHSKEKERTTACTANHLLATLKRMLNLAVKWGLLEKNPAGGQEKFKEGPLRERYLSKE 219 Query: 178 DMQQFKSF--WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTII 233 ++ +F + A LLY+G R + ++++ + K G Sbjct: 220 ELPKFLKALEDQDDLLSVAALRMLLYTGCRREEIMSLRWENVRLDEERIFLPKTKNGRSR 279 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ----------FSIWFKAKATKAGVN 283 TV L +++ K+ + + ++ F+ AG++ Sbjct: 280 TVHLNARAKEVIQDLQARKDQEDRTRGSEYVFPSRQGTKKGYIYDLRKPFEKACLNAGID 339 Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRI 339 H +R A+++ +GA + + G + + + Y AD ++ + + Sbjct: 340 NFRIHDLRHTFASMAVSSGADLYAVQRLLGHQDIAMTQRYAHLNADDLKKATEGVSEM 397 >gi|158320318|ref|YP_001512825.1| integrase family protein [Alkaliphilus oremlandii OhILAs] gi|158140517|gb|ABW18829.1| integrase family protein [Alkaliphilus oremlandii OhILAs] Length = 380 Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats. Identities = 49/372 (13%), Positives = 112/372 (30%), Gaps = 52/372 (13%) Query: 15 RTRHGKIIYYFRKG--HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 R R YY+ G G+R ++ T A + T P+ T+ Sbjct: 6 RKRGSSWYYYYDAGSVDGKRNKIERKGGKTKKEALNALNEALTKLGSGYVEPK--KITVH 63 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSG---VESRKH 128 ++++ ++ + +N+ ++ + + G ++ H+ + + Sbjct: 64 EYMTDWVENYIKENRKLNTYNRYKEIYNRHLKPYIGHLGLSEVKPIHLDQMLLGEKKKGL 123 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + S+ ++ F AV+ + + NP ++RPKR E++ Q Sbjct: 124 SGSTLQNIYGTLNSAFNRAVKLQIMYDNPLRFIDRPKRDKFVASTLAVEEIGQLFDALDT 183 Query: 189 GSQPRLAF----EFLLYSGLRCSDSCRAGVQHLQNNIFSIKT---------------QKT 229 + +L GLR + +++ N I KT Sbjct: 184 SKYNDYIMSLGLKIVLELGLRRGELAGLEWKYIDFNKQIITIANNLVDTYTEVSLTTPKT 243 Query: 230 GTIITVELPDGFMKLLAMTP---------------------IGKETFFINNDKQKMNATQ 268 + + G M+LL + D ++ Sbjct: 244 DERRDLYVSKGLMQLLKQHKVLQTKNRMKYRPHYKENEFNGNVCDFVMTWEDGTYVHPNY 303 Query: 269 FSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325 +++ F K ++ H +R +AT+ G + G ++ Y+ Sbjct: 304 YTVKFNKLLKKVNFDRNIRFHDLRHTNATLLLQQGIDFKVIQTRLGHSDINTTLNIYSHV 363 Query: 326 -ADRIRLGIKNS 336 + + + Sbjct: 364 NVEMQKKATEKL 375 >gi|90407171|ref|ZP_01215359.1| tyrosine recombinase [Psychromonas sp. CNPT3] gi|90311747|gb|EAS39844.1| tyrosine recombinase [Psychromonas sp. CNPT3] Length = 298 Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats. Identities = 42/283 (14%), Positives = 92/283 (32%), Gaps = 27/283 (9%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-------GDFDYRKITTKHIRSGVESR 126 I ++ S L+ N+ S+ + + Y+ + Sbjct: 6 IDQFLDSLWLERGLSQNTLASYRFDLCLVQNFLEANNKVLAEASYQDLCDYFSFRLYSDI 65 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + SS + ++++R +++ R++ +P ++ PK + ++ ++ S Sbjct: 66 AYKNSSTARLMSALRRYYQFLCREKLRDDDPSAKLQSPKTLKPLPKSLSESEVDGLLSAP 125 Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242 + + E L +GLR S+ +Q L ++ G + Sbjct: 126 DLSDSVQFRDKAMLELLYATGLRVSELVGLQMQELNLQQGVVRVTGKGEKTRLVPLGEEA 185 Query: 243 KLLAMTPIG-----------KETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHG 288 I + F + +M F K A + ++K+ H Sbjct: 186 NYWVDRYIEEVRPELLKGRSCDILFPSRRGSQMVRQTFWHRIKYYALRCNIDKTLISPHV 245 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330 +R AT + GA + G + + YT A DR++ Sbjct: 246 LRHAFATHLLNYGADLRVVQMLLGHSDLSSTQIYTHIAQDRLK 288 >gi|149199225|ref|ZP_01876263.1| tyrosine recombinase [Lentisphaera araneosa HTCC2155] gi|149137650|gb|EDM26065.1| tyrosine recombinase [Lentisphaera araneosa HTCC2155] Length = 292 Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats. Identities = 37/270 (13%), Positives = 89/270 (32%), Gaps = 24/270 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSG---DFDYRKITTKHIRSGVESRKHTP---SSAIQFLT 138 L+ N+ ++ + + + +Y I + + E K+ S+ + L Sbjct: 13 RGLSQNTIDAYINDLNDFTAYQEQKLNKEYPSINKDDLLNYCEDCKNRELNDSTISRRLV 72 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG----SQPRL 194 ++++ F++ +++ V + +E + + ++++ + E + + Sbjct: 73 TLKIFFRFLYQEKIVPKDVGEHLESARLSRLLPDYLSLPEIERLLHIYDEAIPLQFRNKF 132 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254 E L GLR S+ C ++ + G+ + ++ I Sbjct: 133 IIELLYSCGLRISELCGLRTDSFNYESGFLRVKGKGSKERSVPFGTQVASMSRQYIKNIR 192 Query: 255 FFINNDKQKM-----------NATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301 + ++ + K A KA +NK H +R A+ Sbjct: 193 PQLCKKNNPPELIVSNNGRPLTRSRVWQFLKEAAIKAEINKNLHPHVLRHSFASHLLSNN 252 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRL 331 A + G + E YT ++ RL Sbjct: 253 ADLRIIQELLGHADIATTEIYTH-VEKTRL 281 >gi|127511259|ref|YP_001092456.1| tyrosine recombinase XerC [Shewanella loihica PV-4] gi|126636554|gb|ABO22197.1| tyrosine recombinase XerC [Shewanella loihica PV-4] Length = 297 Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats. Identities = 33/279 (11%), Positives = 91/279 (32%), Gaps = 19/279 (6%) Query: 72 KWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVESRKHT 129 + E+ L+ ++ ++ +++ +F + +++ + +++ + Sbjct: 3 DDWVQEFVSYLVSERQLSPHTVRNYRFELERVGELLPENFIWAEVSDEQLQAVLNKLHRK 62 Query: 130 ---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 P S L++++ + +++ Y+ +PCL++ PK++ + + + S Sbjct: 63 GLGPRSIALTLSALKQFCHYLLQEGYIKKDPCLNLSAPKQQKPLPKNMDLDSVTHLLSIE 122 Query: 187 SEG---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELPDGFM 242 + + + E SGLR ++ + + + K V + + Sbjct: 123 GDDALALRDKAIMELFYSSGLRLAELAALDTRDIASGEHQVKVMGKGSKERIVPIGRMAL 182 Query: 243 KLLAMTPIGKETFFINNDKQKMN-------ATQFSIWFKAKATKAGVN--KSAHGVRKFS 293 + + +D + G+N H +R Sbjct: 183 SAIDDWLKVRSLLPCEDDALFVTAKGKRLAHRSIQARLNKWGQLQGLNARVHPHKLRHSF 242 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 AT ++ A + G + + YT D L Sbjct: 243 ATHMLESSADLRAVQELLGHANLSTTQVYT-SLDFQHLA 280 >gi|291515144|emb|CBK64354.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301] Length = 372 Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats. Identities = 49/318 (15%), Positives = 95/318 (29%), Gaps = 30/318 (9%) Query: 28 GHGRRIRLPYPHESTFIPAYMS-------ALTGSTPKREYINSPRKKPTTLKWLISEYRK 80 G + + F Y+ A+ + P++E P Y + Sbjct: 47 GGRAYLPAEDFVLAEFFDRYVKMAFIDYSAIKETAPRKEEDKRPPLPEG--------YLE 98 Query: 81 SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQF 136 + ++ + SYF + +T I + + + Q Sbjct: 99 KLQQVRYSDHTVRVYTSYFRDFQQHFEGRKIETVTPGEINDYLLYLIHEKNISSCQQNQR 158 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196 + +++ + + C V R KR+ +KE++++ + F Sbjct: 159 INAIK----FYYEKVLGQERRCYKVNRAKREKTLPDVLSKEEIKKILDVTVTDLRFFCMF 214 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254 L +GLR S+ + + ++ K L MK L + Sbjct: 215 SILYSAGLRISELLELKPGDINESRSLIRVRQGKGKKDRYTLLSRPLMKKLTEYNRLYKP 274 Query: 255 FFINNDKQK---MNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMA 309 + + + S KA A +AG+ K H +R AT + G + Sbjct: 275 KVWLFEHRPGEPFTESIVSKRLKAAAREAGITKRIYPHLLRHSFATHLLEQGTDIKIVKE 334 Query: 310 TYGWKTVDQAETYTKGAD 327 G + E Y AD Sbjct: 335 LMGHNNIKTTERYVHIAD 352 >gi|317046395|ref|YP_004114043.1| tyrosine recombinase XerC [Pantoea sp. At-9b] gi|316948012|gb|ADU67487.1| tyrosine recombinase XerC [Pantoea sp. At-9b] Length = 302 Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats. Identities = 42/279 (15%), Positives = 88/279 (31%), Gaps = 21/279 (7%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESR 126 + + + L+ ++ ++ II + + T ++I + Sbjct: 10 AVEGFLRYLKVERQLSPLTQQNYARQLQAIITMADEMKITAWTQLEPAQVRNIAARSRRA 69 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 SS L+++R W V Q+ ++ NP + P+ + +++ Q Sbjct: 70 GLGASSLALRLSALRSFLDWQVSQDMLSGNPAKGIATPRNARHLPKNMDVDEVNQLLEID 129 Query: 187 SEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFM 242 + R E + GLR S+ ++HL K V + + Sbjct: 130 LNDPLAVRDRAMLETMYGGGLRLSELVNMDLRHLDLEAGEVWVLGKGSKERRVPIGGTAV 189 Query: 243 KLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293 L + F+++ +++A F K GV + H +R Sbjct: 190 TWLQHWLPLRASFAPQDDAVFVSSRGSRISARNVQKRFAEWGIKQGVASHIHPHKLRHSF 249 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 AT ++ + G + + YT D L Sbjct: 250 ATHLLESSGDLRAVQELLGHANLSTTQIYTH-LDFQHLA 287 >gi|229815095|ref|ZP_04445432.1| hypothetical protein COLINT_02137 [Collinsella intestinalis DSM 13280] gi|229809325|gb|EEP45090.1| hypothetical protein COLINT_02137 [Collinsella intestinalis DSM 13280] Length = 333 Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats. Identities = 48/318 (15%), Positives = 99/318 (31%), Gaps = 33/318 (10%) Query: 34 RLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSR 92 R P + ++ G +R + L+ EY +LA N+ Sbjct: 5 RPPVRDPEQGVEDRRASYNGRVERRRTGVTE------LERCRGEYLNHLTVERNLAANTI 58 Query: 93 ISFESYFDQIIRKSGDF---DYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKW 146 ++E + G+ + + + V +++ +S + L++++ ++ Sbjct: 59 AAYERDLRAYLAFLGERGTRRPDDVIRRDVEDFVAAKRADHAADASVNRALSAVKGFHRF 118 Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPRLAFEFLLYS 202 VR+ ++NP ++ PK + E Q + G + R E L Sbjct: 119 MVREGLSSVNPTATLRVPKMGDHLPDVISIEAAERLLDQDFPATAAGMRDRAVLEVLYGC 178 Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFI---- 257 GLR S+ C V + + ++ V L ++L + Sbjct: 179 GLRASELCGLDVNEVYLDEGFVRVMGKGSKERLVPLVGTARRVLGTYLAEARSELFSHTR 238 Query: 258 ----------NNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHE 306 N +++ + G++ H +R AT GA Sbjct: 239 SASASAAVFLNMRGTRLSRQSVHAICERYGRMVGIDGLHPHTLRHSFATHMLAGGADLRA 298 Query: 307 LMATYGWKTVDQAETYTK 324 L G + + YT Sbjct: 299 LQEILGHADIATTQIYTH 316 >gi|149915599|ref|ZP_01904125.1| tyrosine recombinase [Roseobacter sp. AzwK-3b] gi|149810491|gb|EDM70334.1| tyrosine recombinase [Roseobacter sp. AzwK-3b] Length = 304 Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats. Identities = 46/289 (15%), Positives = 88/289 (30%), Gaps = 29/289 (10%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSG 122 + + + ++ A N+ ++ + G +I +R+ Sbjct: 7 RDALQGWLETQKALKGAADNTLEAYGRDVAGFLTFMTGHKGEMQGIAPLTRIGVTDMRAW 66 Query: 123 VESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + + P S + L++++ ++W +E LS PK + + RP E Sbjct: 67 MAFIRGEDVGPRSLARKLSAVKSFYRWLAEREGFDATAVLSARAPKFQRKLPRPLAPEAA 126 Query: 180 QQFKSF-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 Q ++ + L GLR S++ L T K G Sbjct: 127 QDLIDTLELQSATPWVAARDQAVVTLLYGCGLRISEALGLTGGDLPMGEALRITGKGGKE 186 Query: 233 ITVELPDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKAGVNKS 285 V + +A F +N +A T+ G+ + Sbjct: 187 RIVPVIAPARDAVAHYARLCPFDLRPGTPLFRGMRGGPLNPRAVQKVTEAARTQLGLPAT 246 Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R AT +AG + G ++ + YT D RL Sbjct: 247 ATPHAMRHSFATHLLNAGGDLRAIQELLGHASLSTTQAYT-AVDTSRLM 294 >gi|126651787|ref|ZP_01723989.1| site-specific tyrosine recombinase XerC [Bacillus sp. B14905] gi|126591465|gb|EAZ85572.1| site-specific tyrosine recombinase XerC [Bacillus sp. B14905] Length = 355 Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats. Identities = 50/292 (17%), Positives = 93/292 (31%), Gaps = 43/292 (14%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRK------------SGDFDYRKITTKHIRS---- 121 Y + + +R +E R D IT + IR Sbjct: 51 YLTTI--KGKSQRTRKEYEYDLTLFFRFHTAVQEDLDIENLAVIDIATITIEEIRDITLE 108 Query: 122 --------GVESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIR 172 R ++ +S + + +++ FK+ ++ + NP +E PK + Sbjct: 109 DLYYFMEYCEVQRGNSAASRARKVATLKSFFKYLKGKRRLIEENPAEELETPKIGRKRPI 168 Query: 173 PWTKE---DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229 + + F L G+R ++ C+ + +Q ++ + Sbjct: 169 YMNFQEATQFIDGIPANQASPRNYCMMMFFLNLGIRVTELCQLNITSIQGRHLTVVGKGN 228 Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQK---------MNATQFSIWFKAKATKA 280 TV L D M+ LA +T + N + + K ++ Sbjct: 229 -KERTVYLNDSCMQALADYENSGKTPYKGNGDEPLFVSQKGTRFTRQTVAKIVKRINQQS 287 Query: 281 GVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 G+ K + H +R SAT+ AGA L G +V + YT D Sbjct: 288 GLQKERLTPHKLRHTSATMMYKAGADIRSLQHILGHSSVATTQIYTHIEDEQ 339 >gi|84622421|ref|YP_449793.1| site-specific tyrosine recombinase XerD [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|161899015|ref|YP_199478.2| site-specific tyrosine recombinase XerD [Xanthomonas oryzae pv. oryzae KACC10331] gi|84366361|dbj|BAE67519.1| integrase-recombinase XerD [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 323 Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats. Identities = 46/312 (14%), Positives = 100/312 (32%), Gaps = 37/312 (11%) Query: 46 AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK 105 A L P + ++ ++ + + +A + S+ + + R Sbjct: 7 AERRQLAQQLPPLQAADAGV-----IERFLDRFWAE---QGVARQTLESYRRDLEGLARW 58 Query: 106 -----SGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 G ++ ++P S + L+++R + W +R + +P Sbjct: 59 RAGAGGGLLGIDRVALFDYLRWRAQANYSPRSTARLLSTLRAFYGWCLRDGVRSDDPTAL 118 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQH 216 ++ P+ + T+ ++ + + + R E + +GLR S+ Sbjct: 119 IDPPQLPRSLPKALTESQIEALLAAPEVDTPAGLRDRAMLELMYAAGLRVSELVNLPAVG 178 Query: 217 LQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIG----------------KETFFINN 259 + ++ V L + L + FI+ Sbjct: 179 VNLRQGVLRVTGKGSKDRLVPLGEESQHWLERYLREARPLLAANKPVAAVDGQVPLFIDA 238 Query: 260 DKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTV 316 +Q ++ F K A AG++ S HG+R AT + GA L G ++ Sbjct: 239 ARQALSRQHFWALVKRYAAVAGIDPAMVSPHGLRHSFATHLLNHGADLRALQMLLGHSSL 298 Query: 317 DQAETYTKGADR 328 + YT A + Sbjct: 299 STTQIYTLVARQ 310 >gi|311108190|ref|YP_003981043.1| tyrosine recombinase XerD [Achromobacter xylosoxidans A8] gi|310762879|gb|ADP18328.1| tyrosine recombinase XerD [Achromobacter xylosoxidans A8] Length = 327 Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats. Identities = 51/323 (15%), Positives = 94/323 (29%), Gaps = 51/323 (15%) Query: 62 NSPRKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGD------------ 108 P + + I + + L+ N+ ++ R D Sbjct: 5 RPPLESQADIDAFIDAVWLED----GLSANTLAAYRRDLTGFARWLEDPEAYAREMADRH 60 Query: 109 --------------FDYRKITTKHIRSGVESRK--HTPSSAIQFLTSMRVLFKWAVRQEY 152 R I + R ++A + L ++R + WA+R+ Sbjct: 61 GDAAQAHALPAGPAKPLRDAGKADIEAWFAFRHEETRATTANRRLAALRRFYAWALREHR 120 Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG----SQPRLAFEFLLYSGLRCSD 208 +PCL++ K+ + +++ + G + R E L +GLR S+ Sbjct: 121 AERDPCLTLIAAKQPPRMPKTLSEQQVDALLRAPDLGQARGLRDRAMLETLYATGLRVSE 180 Query: 209 SCRAGVQHLQNNIFSIKTQ--KTGTIITVELPDGFMKLLAMTPIGKETF----------F 256 + N ++ K G V L + + F Sbjct: 181 LVGVRALDVSLNEGVVRVVLGKGGKDRLVPLGAEAAHWIDLYLKSGRPELAAGRVSDALF 240 Query: 257 INNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWK 314 I + M+ F K A A V S H +R AT + GA + G Sbjct: 241 ITGRAEAMSRQAFWQLVKKYALLADVRAPLSPHVLRHAFATHLLNHGADLRVVQMLLGHA 300 Query: 315 TVDQAETYTKGADRIRLGIKNSR 337 + + YT A + + Sbjct: 301 DISTTQIYTHVARERLKALHAAH 323 >gi|238028460|ref|YP_002912691.1| site-specific tyrosine recombinase XerD [Burkholderia glumae BGR1] gi|237877654|gb|ACR29987.1| Tyrosine recombinase XerD [Burkholderia glumae BGR1] Length = 341 Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats. Identities = 49/317 (15%), Positives = 103/317 (32%), Gaps = 28/317 (8%) Query: 38 PHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI--SEYRKSAHWGSLAVNSRISF 95 P + +A + + + + R+ T L + + + L+ N+ ++ Sbjct: 19 PRGAAGRKPRTAAGSANGAEPLGASPEREASRTSIELFCDALWLEH----GLSQNTLDAY 74 Query: 96 ESYFDQIIRKSGDFD---YRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQE 151 + + + + +R +S+ + L+ R + WA+R+ Sbjct: 75 RRDLTLFAQWLATVHGASIDAVDEAMLTGYIAARSDGKATSSNRRLSVFRRYYGWALREH 134 Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCS 207 A++P L + K+ ++ ++ + G+ + R E + SGLR S Sbjct: 135 RAALDPTLRLLSAKQPARFPATLSEAQVEALLAAPEVGTALGLRDRTMLELMYASGLRVS 194 Query: 208 DSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETF----------F 256 + + N ++ V + + F Sbjct: 195 ELVMLKTVEVGLNDGVVRVMGKGSKERLVPFGEVAHGWIERYLREARPALLGARTSDALF 254 Query: 257 INNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWK 314 + + M QF K A +A + + S H +R AT + GA + G Sbjct: 255 VTARGEGMTRQQFWNIIKRHAMRAEIRAHLSPHTLRHAFATHLLNHGADLRVVQMLLGHS 314 Query: 315 TVDQAETYTKGADRIRL 331 + + YT A R RL Sbjct: 315 DISTTQIYTHVA-RERL 330 >gi|226313077|ref|YP_002772971.1| tyrosine recombinase [Brevibacillus brevis NBRC 100599] gi|226096025|dbj|BAH44467.1| probable tyrosine recombinase [Brevibacillus brevis NBRC 100599] Length = 314 Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats. Identities = 38/281 (13%), Positives = 89/281 (31%), Gaps = 26/281 (9%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY------RKITTKHIRSGVESR 126 + + Y + + + ++ + + + + + + + + R Sbjct: 12 EMFTRYLR--VEKNASPHTVKQYVADISEFVSFMEQHQITVFAAVSYLHGRSFLAQLAGR 69 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-- 184 + S + L+S+R L+++ +R+ + NP V PK + + +++Q F Sbjct: 70 GLSRRSIARKLSSLRSLYRFLLREGQLEQNPFQLVSTPKMEKKLPSFLYPQEVQAFFDLP 129 Query: 185 --FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI------------FSIKTQKTG 230 G + RL FE L SG+R ++ V + ++ + Sbjct: 130 DTTTPLGIRDRLIFELLYASGMRVTELTTLSVSDVNPSMGVALVYGKGAKERYVPVGSYA 189 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT--KAGVNKSAHG 288 + + + + L + +N + ++ + S H Sbjct: 190 CDVLRQYLEHGREKLLAGKVEHGNLLVNYRGEPLSDRSVRRIVDKYVDTYALQLRVSPHT 249 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + GA + G V + YT Sbjct: 250 FRHTFATHMLNGGADLRTVQELLGHVNVSTTQVYTHVTKER 290 >gi|239631511|ref|ZP_04674542.1| tyrosine recombinase XerC subunit [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239525976|gb|EEQ64977.1| tyrosine recombinase XerC subunit [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 298 Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats. Identities = 38/291 (13%), Positives = 87/291 (29%), Gaps = 29/291 (9%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-------FDYRKITTKHIRSGVES 125 EY + + + ++ S + + + + + Sbjct: 5 AAFQEYLE--VERQYSPETVTAYLSDLQEFQAFLKANGGFTDFRHVDDLDVQTYLTDLNK 62 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS- 184 + +S + ++S+R +++ R + V NP VE K+ + + + ++Q+ Sbjct: 63 QDLARTSIARKISSLRSFYRYLTRIDVVKSNPFELVELKKQHHHLPQFFYEAEIQELFKT 122 Query: 185 ---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDG 240 + R E L +G+R S+ + + + N + K V Sbjct: 123 VAGKTPLDQRNRALLEVLYGTGIRVSECAKLTLNQVDFNTALLLIHGKGNKDRYVPFGQY 182 Query: 241 FMKLLAMT------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 + L F+N + + + + + N Sbjct: 183 AQQALRTYLKDGRQVLMAKSQAQHRYVFVNQYGRPITSRGIEYILDQLIKQTTLTANIHP 242 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 H +R AT D GA + G ++ + YT L + + Sbjct: 243 HMLRHSFATHMLDHGADLRTVQELLGHASLSTTQIYTHVT-MAHLKNEYMK 292 >gi|90408775|ref|ZP_01216920.1| integrase/recombinase (XerC/CodV family) [Psychromonas sp. CNPT3] gi|90310119|gb|EAS38259.1| integrase/recombinase (XerC/CodV family) [Psychromonas sp. CNPT3] Length = 298 Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats. Identities = 36/279 (12%), Positives = 92/279 (32%), Gaps = 22/279 (7%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSG---DFDYRKITTKHIRSGVESRKHTP 130 I Y L+ + ++ + I ++ + + H+R ++ Sbjct: 7 IDRYLNHIASQRGLSPITIKNYSRNLAEFISLLEPQNIKSWQDLNSDHVRLIIKELHQKG 66 Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S ++++R ++ V+ E + NP V PK + + +++ Q + Sbjct: 67 IKSRSIATKISALRSFLEFLVQDEVLTFNPAKGVVTPKLNKPLPKNISVDEVFQLLNIHE 126 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243 + + + E + SGLR S+ ++ L+ + K + + ++ Sbjct: 127 DDPLSLRDQCMMELMYSSGLRLSELVGIDLKDLKLREAEVMVLGKGSKQRLLPITKKAVE 186 Query: 244 LLAMTPIGKETFFIN--------NDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFS 293 L + + K++++A + + + + H +R Sbjct: 187 SLRAWLKVRPELCESGEQALFVSKQKKRISARNVQMRMEKWGLQQQLPSHLNPHKLRHSF 246 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 AT ++ + + G + + YT D L Sbjct: 247 ATHMLESSGNLRAVQSLLGHANLSTTQVYTH-LDFQHLA 284 >gi|320104451|ref|YP_004180042.1| tyrosine recombinase XerD subunit [Isosphaera pallida ATCC 43644] gi|319751733|gb|ADV63493.1| tyrosine recombinase XerD subunit [Isosphaera pallida ATCC 43644] Length = 325 Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats. Identities = 40/296 (13%), Positives = 84/296 (28%), Gaps = 28/296 (9%) Query: 56 PKREYINSPRKKPTTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDF----- 109 P + + R T I + L+ + ++ + R Sbjct: 16 PPARSLPARRAPDGT--QWIGGFLHYLMTECRLSPGTLAAYRGDLVKFTRWRAAREAVPR 73 Query: 110 DYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 + + + V+ P++ + L+S+ F++ + ++ N V P Sbjct: 74 PIAALQVGDLEAYVDYLHGLGLAPATVCRHLSSLSSFFRYLAIEGRLSENRVELVTAPSL 133 Query: 167 KTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---- 218 + + Q +G + R E L +G R S+ ++ L Sbjct: 134 WERLPTVIGPQAVSQLLEAPAEWGWKGRRDRAILETLYATGCRVSEVAGLTIRDLDLDSA 193 Query: 219 -------NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271 + I + F++ + ++ Sbjct: 194 SARVVGKGDRERIVPLGQPAQRALRRWLEERPRRVQRRPQVVAVFVSRTGRPLDRGSIWR 253 Query: 272 WFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 KA A AG+ S H +R AT GA + G ++ + YT+ Sbjct: 254 IVKASARLAGLSATVSPHTLRHSFATHLLAGGADLRAVQELLGHASISTTQIYTRV 309 >gi|320352237|ref|YP_004193576.1| integrase family protein [Desulfobulbus propionicus DSM 2032] gi|320120739|gb|ADW16285.1| integrase family protein [Desulfobulbus propionicus DSM 2032] Length = 354 Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats. Identities = 48/323 (14%), Positives = 105/323 (32%), Gaps = 20/323 (6%) Query: 35 LPYPHESTFIPAYMSA--LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSR 92 L + + + + ++ + T + Y N++ Sbjct: 31 LSQTFDRLSEAQRWAEDTESLLRSGGQITDNDVPEELTFVDALDRYELEVSNRK-RPNTK 89 Query: 93 ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQ 150 I + +++ ++IT + + + R + PS+ + L + LF A + Sbjct: 90 IRERTSANRLREHFSGLKLKEITPSLVAAFRDKRLKSVGPSTVQKDLALLSHLFTIANAE 149 Query: 151 EYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFKS--FWSEGSQPRLAFEFLLYSGLRCS 207 + NP ++ +P + +R +K++ + S + + +L++G+R S Sbjct: 150 WALDIKNPVATIRKPAKPDSRLRLLSKDEARHLLETSKQSRNKKLYHFLQLMLHTGMRPS 209 Query: 208 DSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA 266 ++ + + I T V L ++LL + + Sbjct: 210 EAAGITWGQIDIDARIIDLTVTKTKPRRVPLTVKAVELLLELMPDQYEKNSFVFLPNNCS 269 Query: 267 TQ--------FSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317 F F KA + + H +R +A+ AG L G T+ Sbjct: 270 ETLRRRPNLFFRRAFWNALKKANIEDFHMHDLRHTAASYLLMAGVDLRTLADILGHSTMQ 329 Query: 318 QAETYTKGADRIRLGIKNSRRIS 340 + YT D +L K +I Sbjct: 330 MVQRYTHLLDDHKL--KAIDKIE 350 >gi|313159128|gb|EFR58503.1| tyrosine recombinase XerD [Alistipes sp. HGB5] Length = 298 Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats. Identities = 51/291 (17%), Positives = 93/291 (31%), Gaps = 28/291 (9%) Query: 76 SEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG---DFDYRKITTKHIRSGVESRKHTPS 131 YR L+ N+ S+ Q D RK+ I + Sbjct: 13 RRYRTYIKLEKRLSQNTVESYMRDLRQFAHFILRQYDVAPRKVEGTMIERYMAWLYDRGR 72 Query: 132 ---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----S 184 S + L +R F + + + + +P V+ PK T +++ Sbjct: 73 EKTSQARCLCGIRSFFNFLLVNDQIETSPAEFVDTPKFGRPLPDILTTDEIDSIIATVDM 132 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243 ++G + E L GLR S+ + L I+ V + + Sbjct: 133 RSTKGLRDSAMLEVLYSCGLRVSELTSLRLSDLFFGEGYIRVIGKGNKQRLVPISNTARD 192 Query: 244 LLAMTPIGKE-------TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294 + + T F+NN ++ K +AG++K S H R A Sbjct: 193 KIQRYLEERRSARSGEETVFLNNRGGQLTRVMVFTILKRAVERAGIDKHISPHTFRHSFA 252 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR-ISSVVD 344 T + GA+ ++ G +++ E YT L + RR + + Sbjct: 253 THLLEGGASIRQVQEMLGHESILTTEIYTH------LDSDHLRRTLEEHLP 297 >gi|116328373|ref|YP_798093.1| site-specific recombinase XerD [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116331099|ref|YP_800817.1| site-specific recombinase XerD [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116121117|gb|ABJ79160.1| Site-specific recombinase XerD [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124788|gb|ABJ76059.1| Site-specific recombinase XerD [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 298 Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats. Identities = 42/276 (15%), Positives = 89/276 (32%), Gaps = 24/276 (8%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVES---RKHT 129 EY S L+ NS S+ ++ K+ I + RK + Sbjct: 12 FQEYL-SVE-KGLSDNSIYSYGYDLNKFKNFLEKEHIDFLKVQANDIMRFLNEERDRKIS 69 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + + + ++R +K+ ++ + NP +E P+ T++++++ + E Sbjct: 70 SKTIAREVVAIRQFYKFLKDEKKLDTNPTEKIETPEVMRNIPDYLTQDEIEELFASIRED 129 Query: 190 ----SQPRLAFEFLLYSGLRCSDSCRAG-VQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 + + FE L SGLR S++C + K G V + + + Sbjct: 130 NLYELRDKCIFELLYSSGLRISEACNLRLSDMDLEGMILTVEGKGGRQRLVPFGEKSLDI 189 Query: 245 LAMTPIGKETFFINNDKQ----------KMNATQFSIWFKAKATKAGV--NKSAHGVRKF 292 + F + +N + + + H +R Sbjct: 190 MNRYLKQSRPFILKARNCEYLFVSKKGSYINRKSVWRLLNHYIKRTSISKKVTPHTLRHS 249 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 AT + A + G + + YT A++ Sbjct: 250 FATHLLENHADLKSVQELLGHIDISTTQIYTHMANK 285 >gi|330818124|ref|YP_004361829.1| Tyrosine recombinase XerD [Burkholderia gladioli BSR3] gi|327370517|gb|AEA61873.1| Tyrosine recombinase XerD [Burkholderia gladioli BSR3] Length = 392 Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats. Identities = 45/275 (16%), Positives = 90/275 (32%), Gaps = 26/275 (9%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSG---DFDYRKITTKHIRSGVESRKH-TPSSA 133 + + L+ N+ ++ + + ++ + + + +R +S+ Sbjct: 112 WLEH----GLSKNTLDAYRRDLTLFAQWLAQTHEASLDVVSEPILTAYIAARSDGKATSS 167 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EG 189 + L+ R + WA+R+ A +P L V K+ ++ ++ G Sbjct: 168 NRRLSVFRRYYGWALREHRAAADPTLRVLSAKQAPRFPSTLSEGQVEALLGAPEVETALG 227 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT 248 + R E + SGLR S+ + N ++ V + + Sbjct: 228 LRDRTMLELMYASGLRVSELVTLKTVEVGLNDGVVRVMGKGSKERLVPFGEVAHGWIERY 287 Query: 249 PIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296 F+ + M QF K A +A + + S H +R AT Sbjct: 288 LREARPALLGARASDALFVTARGEGMTRQQFWNIIKRHALRAEIRAHLSPHTLRHAFATH 347 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 + GA + G + + YT A R RL Sbjct: 348 LLNHGADLRVVQMLLGHSDISTTQIYTHVA-RERL 381 >gi|227549015|ref|ZP_03979064.1| site-specific tyrosine recombinase XerC [Corynebacterium lipophiloflavum DSM 44291] gi|227078925|gb|EEI16888.1| site-specific tyrosine recombinase XerC [Corynebacterium lipophiloflavum DSM 44291] Length = 298 Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats. Identities = 40/280 (14%), Positives = 90/280 (32%), Gaps = 23/280 (8%) Query: 71 LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES---R 126 L I ++ + A + + ++ S ++ + ++T +R+ + R Sbjct: 9 LGEAIEDFAEHAELVLGRSPATVKAYRSDLATLLPF--ATTFAELTLPTLRAWLADAVSR 66 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT-------KEDM 179 S+ + +++R WA Q Y+ +P + PK E Sbjct: 67 GLARSTLARRTSAVRAFSTWACNQGYLQSDPAARLLSPKVNRHLPTVVEAEAAGELVEAE 126 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELP 238 +E + R E L +G+R ++ + + T K V Sbjct: 127 INDDDHPAETLRDRAMLELLYATGMRVAELSALDIGDVDLGRGAVKVTGKGDKQRIVPFG 186 Query: 239 DGFMKLLAMTPI--------GKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGV 289 + + F+ + ++++ Q + A + G S H + Sbjct: 187 GAASDAVQRWVSAGRGELAGDTDALFVGSRGKRIDQRQVRRIVERAAVRTGAGEISPHSL 246 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R +AT + GA + G ++ + YT + + Sbjct: 247 RHSAATHMIEGGADLRVVQEMLGHSSLQTTQIYTHVSAQR 286 >gi|222035509|emb|CAP78254.1| Tyrosine recombinase xerC [Escherichia coli LF82] gi|312948364|gb|ADR29191.1| site-specific tyrosine recombinase XerC [Escherichia coli O83:H1 str. NRG 857C] gi|324007468|gb|EGB76687.1| tyrosine recombinase XerC [Escherichia coli MS 57-2] Length = 298 Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats. Identities = 42/278 (15%), Positives = 93/278 (33%), Gaps = 21/278 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSG---VESRK 127 + Y + L+ + ++++ + ++G +++ +R+ + Sbjct: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIIHFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +S L+++R F W V Q + NP V PK + +DM + Sbjct: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI 127 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243 + R E + +GLR S+ ++HL + K + + + Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187 Query: 244 LLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 + ++ F +D ++++A F K G+ + H +R A Sbjct: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 T ++ + G + + YT D L Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 284 >gi|170769828|ref|ZP_02904281.1| tyrosine recombinase XerC [Escherichia albertii TW07627] gi|170121266|gb|EDS90197.1| tyrosine recombinase XerC [Escherichia albertii TW07627] Length = 298 Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats. Identities = 41/278 (14%), Positives = 93/278 (33%), Gaps = 21/278 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSG---VESRK 127 + Y + L+ + ++++ + ++G +++ +R+ + Sbjct: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDAAMVRNFAVRSRRKG 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +S L+++R F W V Q + NP V PK + +D+ + Sbjct: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDINRLLDIDI 127 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243 + R E + +GLR S+ ++HL + K + + + Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187 Query: 244 LLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 + ++ F +D ++++A F K G+ + H +R A Sbjct: 188 WIEHWFDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 T ++ + G + + YT D L Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 284 >gi|295111500|emb|CBL28250.1| Site-specific recombinase XerD [Synergistetes bacterium SGP1] Length = 308 Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats. Identities = 41/280 (14%), Positives = 94/280 (33%), Gaps = 29/280 (10%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVES--- 125 LI + S S + ++ +++ S Q G + R + +R+ + + Sbjct: 3 DHLIDAFMASVQNRSQSEHTLVNYASDLRQFAEYLEGCGASEVRSVEAPILRAYLRALFG 62 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + ++ + L+S+R F + + + +P ++ P R ++E +++ + Sbjct: 63 WGYAKATVARKLSSLRSFFAFLKERGVLERDPARNLRGPGAPRRIPRALSEEVVERLFAA 122 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241 E + E L GLR S+ + + + + K V Sbjct: 123 AGESEEALRDTAILEVLYGCGLRVSELTGLRWEDVDLDERWLIILGKGSKERRVPFGRCA 182 Query: 242 MKLLAMTP------------------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 + L G+E ++ + A A +AG+ Sbjct: 183 QRALTALRGEQALGPFVFVGHEGAGSPGREGRRGRTGQKPVTVRTVHRVVTALAARAGLE 242 Query: 284 K-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 + H +R AT + GA+ + G +++ + Y Sbjct: 243 GVTPHVLRHSCATHLLEHGASLKFVQEFLGHESLATTQIY 282 >gi|85859268|ref|YP_461470.1| integrase/recombinase [Syntrophus aciditrophicus SB] gi|123725256|sp|Q2LT92|XERC_SYNAS RecName: Full=Tyrosine recombinase xerC gi|85722359|gb|ABC77302.1| integrase/recombinase [Syntrophus aciditrophicus SB] Length = 310 Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats. Identities = 44/297 (14%), Positives = 106/297 (35%), Gaps = 35/297 (11%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD----------YRKITTKHIR 120 LI E+ + +L+ ++R ++ S +Q + ++ + +R Sbjct: 2 DELIKEFDRYMDLERNLSTHTRKNYLSDLNQFKIYLEENHRVPTELKTEAWQNVDYMMVR 61 Query: 121 SGVE---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 + + R+ + + L S+R FK+ ++ + NP +V P+ + + + Sbjct: 62 AFLGALYRRRVKKVTIARKLASLRAFFKYLHQKRKIQCNPLEAVSTPRTEKYIPAVLSVD 121 Query: 178 DMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTI 232 ++ + G + R E SG+R S+ + + + I+ + Sbjct: 122 EIFVLLNLPFPEDVFGLRDRAILELFYSSGIRVSELTGINEEDMDFSQGLIRIRGKGKKE 181 Query: 233 ITVELPDGFMKLLAMTPI--------------GKETFFINNDKQKMNATQFSIWFKAKAT 278 V + + + + F+N + +++A + + Sbjct: 182 RIVPIGQPASEAVQRYMMKKPGSETSGKAVATCPVPLFVNRRQGRLSARSVARILSKYVS 241 Query: 279 KAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 +G+ K S H +R AT DAGA + G +++ + YT + + + Sbjct: 242 MSGLQKQISPHTLRHSFATHLMDAGADLRSIQELLGHESLSTTQKYTAVSVNRLMAV 298 >gi|254448959|ref|ZP_05062414.1| tyrosine recombinase XerC [gamma proteobacterium HTCC5015] gi|198261496|gb|EDY85786.1| tyrosine recombinase XerC [gamma proteobacterium HTCC5015] Length = 301 Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats. Identities = 37/286 (12%), Positives = 86/286 (30%), Gaps = 29/286 (10%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESRKHTP- 130 + Y + + ++ ++ + G ++ + +R + Sbjct: 1 MQRYLQHLMAERRYSSHTLDNYRRDLKALCDYIGPLPIDWQQVIGQDVRDFAAASHRGGL 60 Query: 131 --SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--- 185 S + L++ R F++ +R+ + NP V P+ + + + +Q Sbjct: 61 ASRSIARRLSAARGFFQFLIREGQLQANPAQGVPAPRGEKKLPEVLDADRLQHLLDAPSQ 120 Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDG 240 S + R E +GLR ++ L++ K V + Sbjct: 121 RDDANSADVRERAILELFYSTGLRLAELAALDCADLRHQERDLEVVGKGSKARHVMVGGK 180 Query: 241 FMKLLAMTPIGKETF------------FINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286 + L + + FIN +++ A + G+++ Sbjct: 181 ARESLDDWLAVRSQWLEGSGAKREDALFINQRGGRLSVRGIQQRIADYAQRRGLDRNLHP 240 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R AT ++ + G + + YT D L Sbjct: 241 HMLRHSFATHLLESSGDLRAVQKLLGHANIGTTQIYTH-LDFQHLA 285 >gi|78067360|ref|YP_370129.1| site-specific tyrosine recombinase XerD [Burkholderia sp. 383] gi|77968105|gb|ABB09485.1| Tyrosine recombinase XerD [Burkholderia sp. 383] Length = 316 Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats. Identities = 48/275 (17%), Positives = 88/275 (32%), Gaps = 26/275 (9%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSG---DFDYRKITTKHIRSGVESRKH-TPSSA 133 + + LA N+ ++ + D + + + +R +S+ Sbjct: 36 WLEH----GLARNTLDAYRRDLVLFSQWLAETHDAPLDSVDEAMVTGYIAARSDGKATSS 91 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--- 190 + L+ R + WAVR+ V+ +P L + K+ ++ ++ G+ Sbjct: 92 NRRLSVFRRYYGWAVREHRVSADPTLRITSAKQAARFPSTLSEAQVEALLGAPDIGTPLG 151 Query: 191 -QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT 248 + R E + SGLR S+ + N ++ V + + Sbjct: 152 LRDRTMLELMYASGLRVSELVMLKTVEVGLNEGVVRVMGKGSKERLVPFGEVAHGWIERY 211 Query: 249 PIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296 F+ M QF K A A V + S H +R AT Sbjct: 212 LRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQHAEVRAHLSPHTLRHAFATH 271 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 + GA + G + + YT A R RL Sbjct: 272 LLNHGADLRVVQLLLGHSDISTTQIYTHVA-RERL 305 >gi|296105305|ref|YP_003615451.1| site-specific tyrosine recombinase XerC [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059764|gb|ADF64502.1| site-specific tyrosine recombinase XerC [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 300 Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats. Identities = 45/278 (16%), Positives = 97/278 (34%), Gaps = 21/278 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGV---ESRK 127 +S + + L+ + ++++ D QI + G +++ +R V + Sbjct: 10 VSRFLRYLGVERQLSPITLLNYQRQLDAIMQIADEIGLKSWQQCDAATVRGFVVRSRKKN 69 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +P+S L+++R F W V Q + NP + PK + +D+ + Sbjct: 70 LSPASLALRLSALRSFFDWLVSQGGLKANPAKGIATPKAPRHLPKNIDVDDVNRLLDIDL 129 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243 + R E + +GLR S+ ++HL + K + + + Sbjct: 130 NDPLAVRDRAMLEVMYGAGLRLSELVNLDLKHLDLESGEVWVMGKGSKERRLPIGRNAVS 189 Query: 244 LLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 + + F F++ ++++A F K G+ + H +R A Sbjct: 190 WIEHWLDLRGLFGAEEDALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFA 249 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 T ++ + G + + YT D L Sbjct: 250 THMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 286 >gi|91213336|ref|YP_543322.1| site-specific tyrosine recombinase XerC [Escherichia coli UTI89] gi|117626070|ref|YP_859393.1| site-specific tyrosine recombinase XerC [Escherichia coli APEC O1] gi|218560875|ref|YP_002393788.1| site-specific tyrosine recombinase XerC [Escherichia coli S88] gi|237702820|ref|ZP_04533301.1| tyrosine recombinase xerC [Escherichia sp. 3_2_53FAA] gi|331649636|ref|ZP_08350718.1| tyrosine recombinase XerC [Escherichia coli M605] gi|123084331|sp|Q1R4C3|XERC_ECOUT RecName: Full=Tyrosine recombinase xerC gi|166918885|sp|A1AHX9|XERC_ECOK1 RecName: Full=Tyrosine recombinase xerC gi|254799332|sp|B7MH75|XERC_ECO45 RecName: Full=Tyrosine recombinase xerC gi|91074910|gb|ABE09791.1| integrase/recombinase XerC [Escherichia coli UTI89] gi|115515194|gb|ABJ03269.1| site-specific tyrosine recombinase XerC [Escherichia coli APEC O1] gi|218367644|emb|CAR05429.1| site-specific tyrosine recombinase [Escherichia coli S88] gi|226902991|gb|EEH89250.1| tyrosine recombinase xerC [Escherichia sp. 3_2_53FAA] gi|281180860|dbj|BAI57190.1| recombinase [Escherichia coli SE15] gi|294489806|gb|ADE88562.1| tyrosine recombinase XerC [Escherichia coli IHE3034] gi|307628874|gb|ADN73178.1| site-specific tyrosine recombinase XerC [Escherichia coli UM146] gi|315284713|gb|EFU44158.1| tyrosine recombinase XerC [Escherichia coli MS 110-3] gi|323189763|gb|EFZ75042.1| tyrosine recombinase XerC [Escherichia coli RN587/1] gi|323949305|gb|EGB45195.1| tyrosine recombinase XerC [Escherichia coli H252] gi|323954018|gb|EGB49816.1| tyrosine recombinase XerC [Escherichia coli H263] gi|330908111|gb|EGH36630.1| tyrosine recombinase XerC [Escherichia coli AA86] gi|331041506|gb|EGI13654.1| tyrosine recombinase XerC [Escherichia coli M605] Length = 298 Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats. Identities = 42/278 (15%), Positives = 93/278 (33%), Gaps = 21/278 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSG---VESRK 127 + Y + L+ + ++++ + ++G +++ +R+ + Sbjct: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIIHFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +S L+++R F W V Q + NP V PK + +DM + Sbjct: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI 127 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243 + R E + +GLR S+ ++HL + K + + + Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187 Query: 244 LLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 + ++ F +D ++++A F K G+ + H +R A Sbjct: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 T ++ + G + + YT D L Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 284 >gi|107023497|ref|YP_621824.1| site-specific tyrosine recombinase XerD [Burkholderia cenocepacia AU 1054] gi|116690579|ref|YP_836202.1| site-specific tyrosine recombinase XerD [Burkholderia cenocepacia HI2424] gi|170733919|ref|YP_001765866.1| site-specific tyrosine recombinase XerD [Burkholderia cenocepacia MC0-3] gi|105893686|gb|ABF76851.1| Tyrosine recombinase XerD [Burkholderia cenocepacia AU 1054] gi|116648668|gb|ABK09309.1| tyrosine recombinase XerD [Burkholderia cenocepacia HI2424] gi|169817161|gb|ACA91744.1| tyrosine recombinase XerD [Burkholderia cenocepacia MC0-3] Length = 318 Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats. Identities = 49/304 (16%), Positives = 92/304 (30%), Gaps = 27/304 (8%) Query: 50 ALTGSTPKREYINSPRKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSG- 107 A T + ++ + + LA N+ ++ + Sbjct: 9 AADNDTDAVAASPALLASRASIDVFCDALWLEH----GLARNTLDAYRRDLALFSQWLAA 64 Query: 108 --DFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164 D + + +R +S+ + L+ R + WAVR+ + +P L + Sbjct: 65 THDAPLDSADEAMVTGYIAARSDGKATSSNRRLSVFRRYYGWAVREHRASADPTLRITSA 124 Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220 K+ ++ ++ G+ + R E + SGLR S+ + N Sbjct: 125 KQGARFPSTLSEAQVEALLGAPDIGTPLGLRDRTMLELMYASGLRVSELVTLKTVEVGLN 184 Query: 221 IFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQF 269 ++ V + + F+ M QF Sbjct: 185 EGVVRVMGKGSKERLVPFGEVAHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQF 244 Query: 270 SIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 K A +A V + S H +R AT + GA + G + + YT A Sbjct: 245 WNIIKRHAQQADVRAHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVA- 303 Query: 328 RIRL 331 R RL Sbjct: 304 RERL 307 >gi|53715763|ref|YP_101755.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] gi|60683694|ref|YP_213838.1| putative tyrosine recombinase [Bacteroides fragilis NCTC 9343] gi|265767295|ref|ZP_06094961.1| tyrosine recombinase XerD [Bacteroides sp. 2_1_16] gi|52218628|dbj|BAD51221.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] gi|60495128|emb|CAH09949.1| putative tyrosine recombinase [Bacteroides fragilis NCTC 9343] gi|263252600|gb|EEZ24112.1| tyrosine recombinase XerD [Bacteroides sp. 2_1_16] Length = 317 Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats. Identities = 49/296 (16%), Positives = 104/296 (35%), Gaps = 24/296 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGVESRK 127 +I +Y++ SL+ N+ ++ + ++++ + + +G+ Sbjct: 16 IIKKYQQYLKLEKSLSKNTLEAYLTDLEKLLSFLSAEGVEILEVSLTDLQRFAAGLHDIG 75 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 S + ++ ++ F + + +Y+ +P +E PK + T E++ + S Sbjct: 76 IHARSQARIISGIKSFFHFLIIADYIEADPSELLEGPKIGFKLPEVLTVEEIDRIISTID 135 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-----------KTQKTGTI 232 +EG + R E L GLR S+ + L + I I Sbjct: 136 LSKNEGQRNRAILETLYSCGLRVSELTGLKLSDLYFDEGFIKVEGKGSKQRLVPISPKAI 195 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 ++L + + ++ F++ ++ K A AG+ K S H R Sbjct: 196 QEIKLYFLDRNRINIKKDHEDYLFLSRRGTHLSRIMIFHLIKELADMAGITKNISPHTFR 255 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346 AT + GA + G +++ E YT DR L + + Sbjct: 256 HSFATHLLEGGANLRAIQCMLGHESISTTEIYTH-IDRNMLRSEIIEHHPRNIKYR 310 >gi|15966434|ref|NP_386787.1| site-specific tyrosine recombinase XerD [Sinorhizobium meliloti 1021] gi|307318393|ref|ZP_07597828.1| tyrosine recombinase XerD [Sinorhizobium meliloti AK83] gi|34222988|sp|Q92ME3|XERD_RHIME RecName: Full=Tyrosine recombinase xerD gi|15075705|emb|CAC47260.1| Probable integrase/recombinase DNA recombination protein [Sinorhizobium meliloti 1021] gi|306896075|gb|EFN26826.1| tyrosine recombinase XerD [Sinorhizobium meliloti AK83] Length = 311 Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats. Identities = 42/287 (14%), Positives = 87/287 (30%), Gaps = 29/287 (10%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGVES 125 + + + A N+ S+E + G D + S + Sbjct: 6 AAYVEAFLEMMSAERGAAANTLQSYERDLEDARSFLRSRGTGLTDASADDLRSYLSHLAG 65 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-- 183 + SS + L+++R +K+ + +P ++ PK+ + + ED+ + Sbjct: 66 QGFKASSQARRLSALRQFYKFLYAEGLRTDDPTGILDAPKKARTLPKTLSIEDVTRLIGQ 125 Query: 184 ---------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTII 233 + E L +G+R S+ L N I K Sbjct: 126 AEAEAKSGSDDVMAKLRMHALIELLYATGMRVSELVSLPASVLAQNGRFLIIRGKGNKER 185 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMN--------ATQFSIWFKAKATKAGVNK- 284 V L ++ + + ++ + F+ K+ A +AG+ Sbjct: 186 LVPLSQAAIRAMRAYGEALQEESADSPWLFPSNGKSGHLPRQVFARDLKSLAARAGIRVA 245 Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 S H +R A+ GA + G + + YT + Sbjct: 246 AISPHVLRHAFASHLLANGADLRAVQELLGHSDISTTQIYTHVLEER 292 >gi|325136023|gb|EGC58633.1| tyrosine recombinase XerD [Neisseria meningitidis M0579] gi|325202450|gb|ADY97904.1| tyrosine recombinase XerD [Neisseria meningitidis M01-240149] gi|325207798|gb|ADZ03250.1| tyrosine recombinase XerD [Neisseria meningitidis NZ-05/33] Length = 291 Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats. Identities = 43/273 (15%), Positives = 96/273 (35%), Gaps = 19/273 (6%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTP 130 LI ++ L+ N+ + ++I R+ + + + V Sbjct: 5 LIDRLLETLWLDRRLSQNTLNGYRRDLEKIARRLSQSGRMLKDADEADLAAAVYVDGEQR 64 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---- 186 SS + L++ + L+ W R+ NP ++ PK T++ + + + Sbjct: 65 SSQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLLATPDTDT 124 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-----------IKTQKTGTIITV 235 G + + E + +GLR S++ ++ + + + V Sbjct: 125 PHGLRDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITALGKGDKQRMVPMGQESAYWV 184 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294 E + L + + F++ K ++ + K A++AG+ + S H +R A Sbjct: 185 ERYYTEARPLLLKGRNCDALFVSQKKTGISRQLAWMIVKEYASQAGIGHISPHSLRHAFA 244 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGAD 327 T G + G ++ + YT A+ Sbjct: 245 THLVQHGLDLRVVQDMLGHADLNTTQIYTHVAN 277 >gi|163815939|ref|ZP_02207309.1| hypothetical protein COPEUT_02119 [Coprococcus eutactus ATCC 27759] gi|158448749|gb|EDP25744.1| hypothetical protein COPEUT_02119 [Coprococcus eutactus ATCC 27759] Length = 306 Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats. Identities = 35/292 (11%), Positives = 78/292 (26%), Gaps = 28/292 (9%) Query: 74 LISEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTP 130 LI Y + L + +++ Q D ++T + + K+ P Sbjct: 7 LIKNYLEYCGKQKCLDEKTLKAYKIDLKQFSDYLCSSDITNVSTSILEDYIGELHNKYKP 66 Query: 131 SSAIQFLTSMRVLFKW-----AVRQEYVAINPCLSVERPKRKTEGIRP---------WTK 176 + + + S + F + + + E + + Sbjct: 67 KTVKRKIASAKAFFHYLEYKEILDRNPFNKLQIKFREPVILPKTIPLHTVETILSTIYEQ 126 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--TGTIIT 234 + + + E L +G+R S+ C V + SI Sbjct: 127 LNCAKTIYQRRNSLRDAAVIELLFATGMRISELCALKVNDINLYDGSILIYGKGDKERRL 186 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKM-------NATQFSIWFKAKATKAGVNK--S 285 + +L + + +N + A ++ + Sbjct: 187 QIGNPSVISILNKYEVDFHSEIMNCNHFFANQSGRSLTDQTVRRMINKYTALAAIDLHIT 246 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 H R AT +A + G +++ E YT A + I ++ Sbjct: 247 PHMFRHTFATSLLEADVDIRYIQEMLGHSSINITEIYTHVALAKQRSILATK 298 >gi|262091779|gb|ACY25367.1| site-specific recombinase XerD [uncultured actinobacterium] Length = 308 Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats. Identities = 42/276 (15%), Positives = 81/276 (29%), Gaps = 31/276 (11%) Query: 78 YRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSA 133 + LA NS ++ + G ++ + I S + + +S Sbjct: 15 FLNHLQIERGLAANSIAAYRRDLVKFSIFLGSKSLSEVDSNAINDFEISLREAKLSVASI 74 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--- 190 + +++R FK ++ +P L + K + T + Sbjct: 75 NRVDSTLRSFFKHLQQEYG-YADPTLEIAPQKSARRLPKALTISQIVSMIDVAYREGQPI 133 Query: 191 --QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII--------------- 233 + + E L SG R S+ + L + S T + Sbjct: 134 TARDQAMLELLYSSGARVSELIGINLNDLSSIDTSDGKVTTLKLRGKGAKERIVPLGSFA 193 Query: 234 ----TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287 L L + + F+N+ +++ A AG+ + S H Sbjct: 194 TKAVENYLVRVRPDLASKSSKVTSALFLNSRGSRISRQSAWQMVLDAADAAGITEHVSPH 253 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 R AT + GA + G +V + YT Sbjct: 254 VFRHSYATHLLNGGADIRVVQELLGHASVTTTQIYT 289 >gi|57234341|ref|YP_181631.1| phage integrase family site specific recombinase [Dehalococcoides ethenogenes 195] gi|57234884|ref|YP_181043.1| phage integrase family site specific recombinase [Dehalococcoides ethenogenes 195] gi|57234923|ref|YP_181020.1| phage integrase family site specific recombinase [Dehalococcoides ethenogenes 195] gi|57224789|gb|AAW39846.1| site-specific recombinase, phage integrase family [Dehalococcoides ethenogenes 195] gi|57225332|gb|AAW40389.1| site-specific recombinase, phage integrase family [Dehalococcoides ethenogenes 195] gi|57225371|gb|AAW40428.1| site-specific recombinase, phage integrase family [Dehalococcoides ethenogenes 195] Length = 319 Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats. Identities = 49/312 (15%), Positives = 108/312 (34%), Gaps = 30/312 (9%) Query: 58 REYINSPRKKPTTLKWL------------ISEYRKSAHWGSLAVNSRISFESYFDQIIRK 105 ++ + +P+ T++ L + + + L+ + + QII Sbjct: 2 KDTLIAPQAHDRTIRKLDTLIVSTGLRRHLEAFLLACRVEDLSRRTIFDYRQKIGQIIDY 61 Query: 106 ---SGDFDYRKITTKHIRSG--VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 G D +++T HIR + P S + S++V F W R+ ++ +P Sbjct: 62 MVALGLTDPKEVTASHIRGFLLTKQETCQPVSVHGYYRSIKVFFNWLTREGVISFSPMAP 121 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216 + PK + IRP+ ++++ + R L+ +G+R + + Sbjct: 122 IRPPKVPKKIIRPYYPDELRSLLLACEGRGILSLRDRAIMLVLIDNGIRLGELANINISD 181 Query: 217 LQNNIFSIKTQKTGTI-----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271 + + +I G I+ K L + ++ D + + + Sbjct: 182 IDVDRETISVWGKGRKQRVVGISKRTQMAVYKYLHARVDNNPSLWVTTDSKTLTPKGIYL 241 Query: 272 WFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 +AG+ S H R +AT+S G ++ + G T+ Y + Sbjct: 242 AIHRLGERAGLKDVRNSPHTFRHTAATLSIKNGGDLFQVQSMLGHTTLAMTRRYAASL-Q 300 Query: 329 IRLGIKNSRRIS 340 + ++ S Sbjct: 301 SEAAAEAHKKFS 312 >gi|328952276|ref|YP_004369610.1| integrase family protein [Desulfobacca acetoxidans DSM 11109] gi|328452600|gb|AEB08429.1| integrase family protein [Desulfobacca acetoxidans DSM 11109] Length = 362 Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats. Identities = 52/328 (15%), Positives = 96/328 (29%), Gaps = 19/328 (5%) Query: 18 HGKIIYYFRKGHGRRIRLPYPHE-STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76 G+I + H RR+R + + ++ TT K L Sbjct: 32 SGRIWWIEYYDHERRLRRERIGPNKAAAEQRYREVRSLLAEGRFVRKCPDAKTTFKTLAD 91 Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---------K 127 Y A S E +++ GD + IT + + R Sbjct: 92 WYLNLPEVK--AKRSYSRDERSLKKLLPVFGDKLLKDITPAMVEKYRQDRLSELSYRGNP 149 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 P++ + + ++++F A+ E P ++ K R ++ + + Sbjct: 150 TKPATVNREMALLKIIFNKAIANEKAEKTPVKGLKMLKENNARDRVLSEAEYLNLINQCP 209 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247 +P + ++G+R + + I + T L Sbjct: 210 GYLRP--IVKVAYHTGMRQGEILSLTWGQIDLKEGFITLRPEDTKTNEARLIPLNSELMD 267 Query: 248 TPIGKETFFINNDKQKMNAT---QFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGAT 303 G N F++ KA + + + H +R T AG Sbjct: 268 LFKGIPRGLPQLRVFLKNGNPITSIRESFQSACRKANITDFTFHDLRHTFTTNMRRAGIH 327 Query: 304 AHELMATYGWKTVDQAETY-TKGADRIR 330 +MA G KT Y T G D +R Sbjct: 328 DSVIMAITGHKTTAMFLRYNTVGRDELR 355 >gi|160940780|ref|ZP_02088122.1| hypothetical protein CLOBOL_05674 [Clostridium bolteae ATCC BAA-613] gi|158436300|gb|EDP14067.1| hypothetical protein CLOBOL_05674 [Clostridium bolteae ATCC BAA-613] Length = 382 Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats. Identities = 41/261 (15%), Positives = 86/261 (32%), Gaps = 12/261 (4%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---- 130 + Y + + A ++ + + ++ G KI I + + T Sbjct: 108 LEIYIAKMRFDNKAKSTIDQYSKFLGDMLCYLG-KPVDKIQDFDIMNFLNFYAETNGISD 166 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 S+ F + ++ Y+ NP +V+ K + T++++++ + E Sbjct: 167 STKNHKRLIASSFFTFLHKRGYIIKNPMATVDTIKYTAQVREALTQKEVERMRVACGENL 226 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM-----KLL 245 + + E L SG R S+ V+++ ++ G + K L Sbjct: 227 RDNVVLELFLASGCRVSEVAGMRVENIDMKQKTVIVLGKGKKERPVFFSDRLLVYLEKYL 286 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGAT 303 G + Q + + + KAG+ K H +R AT + + G Sbjct: 287 DGRREGPVVISVRAPYQGIKKNAMENIVREISKKAGIEKRVFPHLLRHTFATHALNKGMP 346 Query: 304 AHELMATYGWKTVDQAETYTK 324 L G ++ Y K Sbjct: 347 LESLSDLMGHACIETTRIYAK 367 >gi|218288287|ref|ZP_03492586.1| integrase family protein [Alicyclobacillus acidocaldarius LAA1] gi|218241646|gb|EED08819.1| integrase family protein [Alicyclobacillus acidocaldarius LAA1] Length = 307 Score = 126 bits (317), Expect = 5e-27, Method: Composition-based stats. Identities = 46/284 (16%), Positives = 91/284 (32%), Gaps = 21/284 (7%) Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSGVE 124 ++ + + A + + S+ + + D D ++T+ +R Sbjct: 2 TQSVGDAVKAFLDDAALR-FSPRTVRSYGQDLEAFRQWLDDRGVYDLDALSTRDVRMHAS 60 Query: 125 SRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 SS + L+ +R ++ + +V +V PKR R +E++ Sbjct: 61 DLLAKGAAKSSVARRLSCLRTFLRFCAERGWVRQVMAENVRLPKRDRRLPRYLHEEEVAA 120 Query: 182 FKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE 236 + R EFL +G+R S+ V L + + K G V Sbjct: 121 LIDHVGGDDFVALRDRALLEFLYATGVRVSECVNLDVGDLDLSTGFARVLGKGGRERYVI 180 Query: 237 LPDGFMKLLAMT------PIGKETFFINNDKQKMNATQFSIWFKAKATKA-GVN-KSAHG 288 + + L FIN ++ + + + G+ HG Sbjct: 181 VGRRAVDALRRYLPLRDRMARCSAVFINRRGGRLTDRSVRRVLERRIQEVPGLRSIHVHG 240 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 +R AT + GA + G ++ + YT R +L Sbjct: 241 LRHSFATHMLNGGADLRSVQELLGHASLSSTQIYTHT-SREQLA 283 >gi|224476375|ref|YP_002633981.1| putative site-specific recombinase XerC [Staphylococcus carnosus subsp. carnosus TM300] gi|254799358|sp|B9DPG4|XERC_STACT RecName: Full=Tyrosine recombinase xerC gi|222420982|emb|CAL27796.1| putative site-specific recombinase XerC [Staphylococcus carnosus subsp. carnosus TM300] Length = 296 Score = 126 bits (317), Expect = 5e-27, Method: Composition-based stats. Identities = 34/262 (12%), Positives = 88/262 (33%), Gaps = 20/262 (7%) Query: 88 AVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRV 142 + ++ S+ Q + K R+ + ++ + ++++R Sbjct: 19 SKHTLKSYHDDLVQFNAFLEHEHLKLKSFEYKDARNYLSFLYSKGLKRTTVSRKISTLRS 78 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPRLAFEF 198 +++ + Q+ +NP + + PK++ + +E+M + ++ +G + R+ E Sbjct: 79 FYEFWMTQDDTVVNPFVQLVHPKKEQYLPHFFYEEEMSALFETVEADGHKGLRDRVILEL 138 Query: 199 LLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI 257 L +G+R S+ ++ L N+ K + + + + Sbjct: 139 LYGTGIRVSELVNIKLEDLDLNSPGVKVLGKGNKERFIPFGNMCRESIERYLELFPPIQN 198 Query: 258 NNDKQ--------KMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGATAHEL 307 + + AGV + H +R AT + GA + Sbjct: 199 VKHDYLLVNINGRPITERGVRYVLNDIVKRTAGVTDIHPHKLRHTFATHMLNEGADLRTV 258 Query: 308 MATYGWKTVDQAETYTKGADRI 329 + G + YT +++ Sbjct: 259 QSLLGHVNLSTTGRYTHVSNQQ 280 >gi|254480874|ref|ZP_05094120.1| site-specific recombinase, phage integrase family [marine gamma proteobacterium HTCC2148] gi|214038669|gb|EEB79330.1| site-specific recombinase, phage integrase family [marine gamma proteobacterium HTCC2148] Length = 392 Score = 126 bits (317), Expect = 5e-27, Method: Composition-based stats. Identities = 56/348 (16%), Positives = 113/348 (32%), Gaps = 18/348 (5%) Query: 10 FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 + + ++ GK Y G I L + ++ A + +K+ Sbjct: 47 YRLRYKSEGGKT-AYVTIGRSCDISLAGARKR---ARHLKAQIELGADPQAEAKAKKQVL 102 Query: 70 TLKWLI-SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-- 126 T Y + + E + +I G+ KIT ++ S Sbjct: 103 TWNAFFTDHYLPHVKQHKRS--WKNDLEMHNLRISAFIGNKRLNKITRSEVQRFHASLVE 160 Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 +P++A L +R AV E + NP V+ + + R + E+MQ+ Sbjct: 161 EDLSPATADHHLKLIRQALNLAVDWELLEANPVAKVKLFNQDNQVERYLSDEEMQRLLKV 220 Query: 186 WSEGSQPRLAFE--FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 S + FLL +G R S++ A + Q T + + Sbjct: 221 LKTDSNRVVCNVILFLLSTGARVSEALSAEWSDIDRKNRVWVIQATNSKSKKKRSVPLND 280 Query: 244 LLAMTPIGKETFFINNDKQKMNA---TQFSIWFKAKATKAGV-NKSAHGVRKFSATISAD 299 + +T ++ T + + ++AG+ + H +R A++ + Sbjct: 281 VAIGVLDALDTEGKHDRLFVGKRGPLTTINKVWFRIRSEAGLEDYRIHDLRHSYASLLVN 340 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADR--IRLGIKNSRRISSVVDS 345 AG + E+ G Y + R S +I+ +++ Sbjct: 341 AGHSLFEVQQALGHSDPKVTMRYAHLSKESLQRAANSASDKITEAMEA 388 >gi|254475428|ref|ZP_05088814.1| tyrosine recombinase XerC [Ruegeria sp. R11] gi|214029671|gb|EEB70506.1| tyrosine recombinase XerC [Ruegeria sp. R11] Length = 305 Score = 126 bits (317), Expect = 5e-27, Method: Composition-based stats. Identities = 41/289 (14%), Positives = 85/289 (29%), Gaps = 29/289 (10%) Query: 72 KWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSG 122 + + + A N+ ++ + G +ITT +R+ Sbjct: 8 RDALEHWLAHLGGLRDAADNTLTAYRGDVVDFLAFMTQHFGSPQGLGALAEITTGDMRAW 67 Query: 123 VESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW----- 174 + + + + A + L++++ + W ++ LS PK + + RP Sbjct: 68 MAATRAGGTGARSLARKLSAVKSFYTWLAERQGFEATAVLSARSPKFQKKLPRPLAEDAA 127 Query: 175 --TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 E ++ + ++ L GLR S++ T K G Sbjct: 128 KAMIETVEYQSTSDWVAARDVAVVTVLYGCGLRISEALGLTGGDAPLPAVLRITGKGGKE 187 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGVNKS 285 V + + N +NA+ + G+ + Sbjct: 188 RIVPVLPAARAAVDRYLDLCPHPQETNAPLFRGVRGGPLNASIIRKAMAQARAQLGLPAT 247 Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R AT +AG + G ++ + YT D L Sbjct: 248 ATPHALRHSFATHLLEAGGDLRAIQELLGHASLSTTQAYT-AVDTAHLM 295 >gi|188578603|ref|YP_001915532.1| site-specific tyrosine recombinase XerD [Xanthomonas oryzae pv. oryzae PXO99A] gi|58425056|gb|AAW74093.1| integrase-recombinase XerD [Xanthomonas oryzae pv. oryzae KACC10331] gi|188523055|gb|ACD61000.1| tyrosine recombinase XerD [Xanthomonas oryzae pv. oryzae PXO99A] Length = 336 Score = 126 bits (317), Expect = 5e-27, Method: Composition-based stats. Identities = 49/314 (15%), Positives = 103/314 (32%), Gaps = 32/314 (10%) Query: 47 YMSALTGSTPKREYINSPRKKPTTLKW--LISEYRKS-AHWGSLAVNSRISFESYFDQII 103 Y A++ S+P + + P +I + +A + S+ + + Sbjct: 10 YAVAMSASSPAERRQLAQQLPPLQAADAGVIERFLDRFWAEQGVARQTLESYRRDLEGLA 69 Query: 104 RK-----SGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158 R G ++ ++P S + L+++R + W +R + +P Sbjct: 70 RWRAGAGGGLLGIDRVALFDYLRWRAQANYSPRSTARLLSTLRAFYGWCLRDGVRSDDPT 129 Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGV 214 ++ P+ + T+ ++ + + + R E + +GLR S+ Sbjct: 130 ALIDPPQLPRSLPKALTESQIEALLAAPEVDTPAGLRDRAMLELMYAAGLRVSELVNLPA 189 Query: 215 QHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIG----------------KETFFI 257 + ++ V L + L + FI Sbjct: 190 VGVNLRQGVLRVTGKGSKDRLVPLGEESQHWLERYLREARPLLAANKPVAAVDGQVPLFI 249 Query: 258 NNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWK 314 + +Q ++ F K A AG++ S HG+R AT + GA L G Sbjct: 250 DAARQALSRQHFWALVKRYAAVAGIDPAMVSPHGLRHSFATHLLNHGADLRALQMLLGHS 309 Query: 315 TVDQAETYTKGADR 328 ++ + YT A + Sbjct: 310 SLSTTQIYTLVARQ 323 >gi|254508806|ref|ZP_05120917.1| tyrosine recombinase XerC [Vibrio parahaemolyticus 16] gi|219548263|gb|EED25277.1| tyrosine recombinase XerC [Vibrio parahaemolyticus 16] Length = 310 Score = 126 bits (316), Expect = 5e-27, Method: Composition-based stats. Identities = 37/279 (13%), Positives = 95/279 (34%), Gaps = 22/279 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRS---GVESRK 127 + + + L+++++ +++ + + + G D+ ++ + +R Sbjct: 16 LERFYEYLRSEKGLSLHTQRNYKQQLETMAQHLVQLGLKDWSQVDSAWVRQLASKGMRDG 75 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 SS L+S+R F + + + ++ NP V P++K + +++ Q Sbjct: 76 MKASSLATRLSSLRSFFDFLILRGEMSANPAKGVSAPRKKRPLPKNLDVDEVGQLLEVNE 135 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243 + + R E + +GLR ++ V+ + I+ V + Sbjct: 136 DDPLSIRDRAMMEMMYGAGLRLAELVSINVKDVSFFSGEIRVVGKGDKERKVPFSGMASE 195 Query: 244 LLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293 + + T +++ +++ K V + S H +R Sbjct: 196 WVGKWMKVRGTLAKSDEPALFVSKLGVRISHRNVQKRMAEWGQKQAVASHISPHKLRHSF 255 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 AT ++ + G + + + YT D L Sbjct: 256 ATHVLESSNNLRAVQELLGHENISTTQIYTH-LDFQHLA 293 >gi|163755827|ref|ZP_02162945.1| integrase, site-specific recombinase [Kordia algicida OT-1] gi|161324348|gb|EDP95679.1| integrase, site-specific recombinase [Kordia algicida OT-1] Length = 295 Score = 126 bits (316), Expect = 5e-27, Method: Composition-based stats. Identities = 39/273 (14%), Positives = 93/273 (34%), Gaps = 25/273 (9%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSGVESRKHTP 130 +EY K + + ++ ++E D + IR+ + S Sbjct: 6 FTEYLKLE--KNYSEHTVTAYEKDLRSFAEFCKKEYEDDSIINVHYVQIRNWIVSLVEKG 63 Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185 ++ + ++S++ +K+ ++ + + +P + K + P+++++M + Sbjct: 64 LQNATINRKISSLKTYYKYLLKTKQIEASPLAKHKALKTAKKVQVPFSQKEMDIVLNAVE 123 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241 EG + + E +G+R S+ + +I+ K V L Sbjct: 124 FKNDFEGVRNKTIIEMFYATGMRRSELINLKQSDIDYTAKTIRILGKRNKERIVPLLQKL 183 Query: 242 MKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKA--GVNKSAHGVRK 291 L + ++ + K+ + + A V KS H +R Sbjct: 184 EAQLKEYILHRKQIDNQKKEELFLTAKGNKIYSNLVYRLINDYFSIASTKVKKSPHMLRH 243 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324 AT + GA + + G ++ + YT Sbjct: 244 TFATHLLNQGADLNAVKELLGHASLASTQVYTH 276 >gi|189347316|ref|YP_001943845.1| tyrosine recombinase XerD [Chlorobium limicola DSM 245] gi|189341463|gb|ACD90866.1| tyrosine recombinase XerD [Chlorobium limicola DSM 245] Length = 306 Score = 126 bits (316), Expect = 5e-27, Method: Composition-based stats. Identities = 45/285 (15%), Positives = 100/285 (35%), Gaps = 33/285 (11%) Query: 73 WLISEYRKSAH--------WGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSG 122 L YR++ + +VN+R S+ + + + D + T IR Sbjct: 5 DLAEPYRRTLENFLNHLSVERNFSVNTRESYRNDLKRYLLFMQDENKAIGAVETADIRKF 64 Query: 123 VESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + T S+ + ++++R L K+ + + + NP ++++PK + ++ Sbjct: 65 ISELHATGLEASTLGRNISAIRSLHKFLLIERTLETNPAETIQQPKLAKNLPDVLSLSEV 124 Query: 180 QQFKSFWSEG-------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGT 231 + + + EFL +G+R S+ QHL + ++ K Sbjct: 125 MSLLEAPLQQNPPGKFLLRDKAILEFLYAAGVRVSELTALQQQHLYFDAGFVRILGKGSK 184 Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAG 281 V + + ++ + + + + + + + A AG Sbjct: 185 ERLVPVGNAAIEAITQYQNQLRIGMVTKESEDCLFLNARGKKLSRMAVYLMVREYAALAG 244 Query: 282 VNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + K S H +R AT + GA + G ++ + YT Sbjct: 245 IRKNISPHTLRHTFATHLLEGGADLRAVQEMLGHSSILATQIYTH 289 >gi|227535113|ref|ZP_03965162.1| site-specific recombinase XerD [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187254|gb|EEI67321.1| site-specific recombinase XerD [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 298 Score = 126 bits (316), Expect = 5e-27, Method: Composition-based stats. Identities = 38/291 (13%), Positives = 87/291 (29%), Gaps = 29/291 (9%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-------FDYRKITTKHIRSGVES 125 EY + + + ++ S + + + + + Sbjct: 5 AAFQEYLE--VERQYSPETVTAYLSDLREFQAFLKANGGFTDFRHVDDLDVQTYLTDLNK 62 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS- 184 + +S + ++S+R +++ R + V NP VE K+ + + + ++Q+ Sbjct: 63 QDLARTSIARKISSLRSFYRYLTRIDVVKRNPFELVELKKQHHHLPQFFYEAEIQELFKT 122 Query: 185 ---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDG 240 + R E L +G+R S+ + + + N + K V Sbjct: 123 VAGKTPLDQRNRALLEVLYGTGIRVSECAKLTLNQVDFNTALLLIHGKGNKDRYVPFGQY 182 Query: 241 FMKLLAMT------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 + L F+N + + + + + N Sbjct: 183 AQQALRTYLKDGRQVLMAKSQAQHRYVFVNQYGRPITSRGIEYILDQLIKQTTLTANIHP 242 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 H +R AT D GA + G ++ + YT L + + Sbjct: 243 HMLRHSFATHMLDHGADLRTVQELLGHASLSTTQIYTHVT-MAHLKNEYMK 292 >gi|34222917|sp|Q8PGR5|XERD_XANAC RecName: Full=Tyrosine recombinase xerD gi|21109924|gb|AAM38394.1| integrase-recombinase XerD [Xanthomonas axonopodis pv. citri str. 306] Length = 305 Score = 126 bits (316), Expect = 5e-27, Method: Composition-based stats. Identities = 44/287 (15%), Positives = 91/287 (31%), Gaps = 30/287 (10%) Query: 72 KWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGVES 125 +I + +A + S+ + + R G + Sbjct: 6 ASVIERFLDRFWAEQGVARQTLESYRRDLEGLARWRDGAGGGLLGIDRAALFDYLRWRTR 65 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 ++P S + L+++R + +R + +P ++ P + T+ ++ + Sbjct: 66 ANYSPRSTARLLSTLRAFYGLCLRDGARSDDPTALIDPPHLPRSLPKALTESQIEALLAA 125 Query: 186 WSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDG 240 + + R E + +GLR S+ + ++ V L + Sbjct: 126 PDLDTPAGLRDRAMLELMYAAGLRVSELVNLPAVGVNLRQGVLRVTGKGSKDRLVPLGEE 185 Query: 241 FMKLLAMTPIG----------------KETFFINNDKQKMNATQFSIWFKAKATKAGVN- 283 L + FI+ +Q ++ QF K A AG++ Sbjct: 186 SQHWLERYLREARPLLAANKPVAAVDGQVPLFIDVSRQPLSRQQFWALVKRYAAVAGIDP 245 Query: 284 --KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 S HG+R AT + GA L G ++ + YT A + Sbjct: 246 ATVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQ 292 >gi|237717200|ref|ZP_04547681.1| integrase [Bacteroides sp. D1] gi|262405968|ref|ZP_06082518.1| tyrosine recombinase XerD [Bacteroides sp. 2_1_22] gi|294647940|ref|ZP_06725492.1| tyrosine recombinase XerD [Bacteroides ovatus SD CC 2a] gi|294806338|ref|ZP_06765185.1| tyrosine recombinase XerD [Bacteroides xylanisolvens SD CC 1b] gi|298479972|ref|ZP_06998171.1| tyrosine recombinase XerD [Bacteroides sp. D22] gi|229443183|gb|EEO48974.1| integrase [Bacteroides sp. D1] gi|262356843|gb|EEZ05933.1| tyrosine recombinase XerD [Bacteroides sp. 2_1_22] gi|292636848|gb|EFF55314.1| tyrosine recombinase XerD [Bacteroides ovatus SD CC 2a] gi|294446594|gb|EFG15214.1| tyrosine recombinase XerD [Bacteroides xylanisolvens SD CC 1b] gi|295085584|emb|CBK67107.1| tyrosine recombinase XerD subunit [Bacteroides xylanisolvens XB1A] gi|298273781|gb|EFI15343.1| tyrosine recombinase XerD [Bacteroides sp. D22] Length = 319 Score = 126 bits (316), Expect = 5e-27, Method: Composition-based stats. Identities = 53/299 (17%), Positives = 104/299 (34%), Gaps = 29/299 (9%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG-------DFDYRKITTKHIRSGVES 125 +I +Y++ SL++N+ ++ + D+++ D + +G+ Sbjct: 16 IIRKYQQYLKLEKSLSLNTLDAYLTDLDKLMSFLTLEGIYVLDVCLSDLQR--FAAGLHD 73 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 P S + L+ ++ F++ + + Y+ +P +E PK + T E++ + S Sbjct: 74 IGIHPRSQARILSGIKSFFRFLILENYLEADPSELLEGPKIGFKLPEVLTVEEIDRIISA 133 Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDG 240 EG + R E L GLR S+ + L + F K V + Sbjct: 134 VDRSKAEGQRNRAILETLYSCGLRVSELITLKLSDLYFDEGFIKVEGKGSKQRLVPISPR 193 Query: 241 FMKLLAMTPIGKETFFINNDKQKM-----------NATQFSIWFKAKATKAGVNK--SAH 287 + + + + + + + K A KAG+ K S H Sbjct: 194 AINEIKLYITDRNQIEVKKGHEDFVFVSQRRGKGLSRIMIFHMIKELAQKAGITKNISPH 253 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346 R AT + GA + G +++ E YT DR L + + Sbjct: 254 TFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTH-IDRNMLRSEIIEHHPRNIKYR 311 >gi|83313028|ref|YP_423292.1| site-specific recombinase XerD [Magnetospirillum magneticum AMB-1] gi|82947869|dbj|BAE52733.1| Site-specific recombinase XerD [Magnetospirillum magneticum AMB-1] Length = 308 Score = 126 bits (316), Expect = 5e-27, Method: Composition-based stats. Identities = 34/283 (12%), Positives = 80/283 (28%), Gaps = 26/283 (9%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVE 124 I + + + N+ ++ + + + Sbjct: 5 FDRHIESFLEMMQVERGASPNTLDAYGRDLADFAEFLDGRGFSPLRADARAVAAYIARQA 64 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + + L+ ++ + + + +P +++ P+ + +E++ Sbjct: 65 EIGMAARTQARRLSCLKQFYGFVFAERLRPDDPTANIDAPRLGRPLPKYLRREEVTALLD 124 Query: 185 FWS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELP 238 +G E L +GLR S+ + + + + K V L Sbjct: 125 AARALEGSDGILMTALLETLYAAGLRVSELVSLPLSAVARDPSVLVVRGKGSKERMVPLS 184 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKM-----------NATQFSIWFKAKATKAGVN---K 284 D L + ++T + + + F+ A AG++ Sbjct: 185 DPARAALLAWKVERQTLVPKSKPSRWLFPSSGALGHLTRSGFAKMLGRVAVLAGLDPAKV 244 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 S H +R A+ GA + G + E YT D Sbjct: 245 SPHVLRHSFASHLLAGGADLRSVQEMLGHADIATTEIYTHLID 287 >gi|283834576|ref|ZP_06354317.1| tyrosine recombinase XerC [Citrobacter youngae ATCC 29220] gi|291069704|gb|EFE07813.1| tyrosine recombinase XerC [Citrobacter youngae ATCC 29220] Length = 300 Score = 126 bits (316), Expect = 5e-27, Method: Composition-based stats. Identities = 47/282 (16%), Positives = 99/282 (35%), Gaps = 21/282 (7%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSG---V 123 L ++ + + L+ + ++++ D II +G+ +++ +RS Sbjct: 6 LSQDVARFLRYLGVERQLSPITLLNYQRQLDAIIALAGETGLQSWQQCDAAMVRSFAVRS 65 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + P+S L+++R F W V Q + NP SV PK + +D+ + Sbjct: 66 RRKGLGPASLALRLSALRSFFDWLVNQGELKANPAKSVSAPKAPRHLPKNIDVDDVNRLL 125 Query: 184 SFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD 239 + R E + +GLR S+ ++HL + K + + Sbjct: 126 DIDLNDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLPIGR 185 Query: 240 GFMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVR 290 + + + F ++D ++++A F K G+ + H +R Sbjct: 186 NAVAWIEHWLDLRGLFGGDDDALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLR 245 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 AT ++ + G + + YT D L Sbjct: 246 HSFATHMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 286 >gi|296125451|ref|YP_003632703.1| integrase family protein [Brachyspira murdochii DSM 12563] gi|296017267|gb|ADG70504.1| integrase family protein [Brachyspira murdochii DSM 12563] Length = 310 Score = 126 bits (316), Expect = 5e-27, Method: Composition-based stats. Identities = 37/279 (13%), Positives = 98/279 (35%), Gaps = 23/279 (8%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRKH 128 L+ E+ + A ++ S+ + + + + + ++S+ Sbjct: 17 LLDEFSDYLQTLNFAAHTINSYNKDLKEYFNFLESKNILLDNADHYSVRDYLTFLKSKSL 76 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 T S+ + L+S++ +K+ +R + ++ PKR+ + + +D+ + + + Sbjct: 77 TNSTMSRHLSSIKKFYKYLIRNGLSDKTRIVDMKSPKREEHIAKFLSLDDIDRILAIDDD 136 Query: 189 G----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII----------- 233 G + ++ F+ GLR S+ + ++ +++ G+ + Sbjct: 137 GDFTLLRDKMMALFMYAIGLRVSELASLRLSMIKKGDETLRICGKGSKVRDIPVLPVVYE 196 Query: 234 -TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290 + + + FIN + ++ K A + + S H +R Sbjct: 197 NWDIYMEKRRMIQKEYSQNNDYLFINRFGKPISDRSIRTSMKRLIRNANISMDFSPHTLR 256 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + A + G +T+ + YT + Sbjct: 257 HTFATHLLNNDAEIRGVQELLGHETIATTQRYTHVTNSR 295 >gi|228966946|ref|ZP_04127984.1| Prophage LambdaBa02, site-specific recombinase, phage integrase [Bacillus thuringiensis serovar sotto str. T04001] gi|228792680|gb|EEM40244.1| Prophage LambdaBa02, site-specific recombinase, phage integrase [Bacillus thuringiensis serovar sotto str. T04001] Length = 376 Score = 126 bits (316), Expect = 5e-27, Method: Composition-based stats. Identities = 51/332 (15%), Positives = 102/332 (30%), Gaps = 32/332 (9%) Query: 27 KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS 86 G ++I ++ +T +Y NS + L+ + + S Sbjct: 23 TGRRKQITKGGFKTKKAAQEEVARVTNDLANGDYENSDIR----FSQLVEIWMQEKE-SS 77 Query: 87 LAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS---MRV 142 ++ ++ +++ + G+ I + + + + + ++ Sbjct: 78 CRPSTLYQYKRILRSRVMPEFGEKRLSDIKPLTVHNFHQKLLKEGLTTKYISSVDVMLKQ 137 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202 + V E + NP +RPK K + WT E+ +F + +AF L++ Sbjct: 138 ILDKGVELEMINSNPAKKAKRPKVKKKAQASWTVEEAMKFMEYAKIQGSYYIAFVLALHT 197 Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKT-----------------GTIITVELPDGFMKLL 245 G+R + + +I Q+T + D LL Sbjct: 198 GMRIGEVLALQWDDINFENKTIHVQRTLTLVDGKYELGETKTEASNRMIPMTEDLMGALL 257 Query: 246 AMTPIGKETFFINNDKQKM----NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300 KE F + + KA V H +R+ TI D+ Sbjct: 258 EYQNHRKENSFDLLICTRNKKIVHPYTIRYQMKALCEAIDVPYIRFHDIRRTFTTILIDS 317 Query: 301 GATAHELMATYGWKTVDQA-ETYTKGADRIRL 331 GA A + G V YT + ++ Sbjct: 318 GANAKVVSKLLGHTNVSTTLNIYTDVYEERQI 349 >gi|159045753|ref|YP_001534547.1| integrase family protein [Dinoroseobacter shibae DFL 12] gi|157913513|gb|ABV94946.1| integrase family protein [Dinoroseobacter shibae DFL 12] Length = 388 Score = 126 bits (316), Expect = 5e-27, Method: Composition-based stats. Identities = 55/341 (16%), Positives = 102/341 (29%), Gaps = 19/341 (5%) Query: 10 FVTKERTR-HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMS-ALTGSTPKREYINSPRKK 67 +V + R R G+ HG + L Y++ AL G P E + K Sbjct: 43 YVVQYRNRQTGRSRRKTIGQHGPLMTL--YQAREIARGYLADALRGGDPVMEAQARRKAK 100 Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESR 126 + L +Y + S S D++ + G +++ K I+ S Sbjct: 101 SM--RDLADDYMTNHALPKKRPRSAAMDRSLLDRVVLPAFGRQSVDEVSHKDIQRLHNSL 158 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + TP A + L + +F+ A+R NP V R + R + ++ + + Sbjct: 159 RDTPYQANRVLALLSKMFELAIRWGLRGDNPVKGVPRFAEEK-RYRWLSDNELDRLREAL 217 Query: 187 SEGSQPRLAFEF--LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 R A L +G R + + + T Sbjct: 218 DAHPNQRAANAIRLQLLTGARTGEVLTSQWSDFDLDRGVWVKPSHHTKQKRTEHLPLSAA 277 Query: 245 -------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATI 296 +A F K ++ + + AG+ + H R A+ Sbjct: 278 TVALLRSIAHGRTDDSPFVFPGRKPGHPIKDLKRFWTSVTSTAGLKDYRLHDNRHTHASH 337 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNS 336 +G + + G + Y AD +R + Sbjct: 338 LVSSGHSLPIVGRLLGHTNPMTTQRYAHLADDPLRQAAEVM 378 >gi|325127862|gb|EGC50768.1| tyrosine recombinase XerD [Neisseria meningitidis N1568] Length = 291 Score = 126 bits (316), Expect = 5e-27, Method: Composition-based stats. Identities = 43/273 (15%), Positives = 94/273 (34%), Gaps = 19/273 (6%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTP 130 LI ++ L+ N+ + ++I R+ + + + V Sbjct: 5 LIDRLLETLWLDRRLSQNTLNGYRRDLEKIARRLSQSGRTLKDADEADLAAAVYVDGEQR 64 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---- 186 SS + L++ + L+ W R+ NP ++ PK T++ + + + Sbjct: 65 SSQARALSACKRLYIWMEREGIRTDNPTCLLKPPKIDKNIPTLITEQQISRLLAAPDTDT 124 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL 245 G + + E + +GLR S++ ++ + I K V + + Sbjct: 125 PHGLRDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITALGKGDKQRMVPMGQESAYWV 184 Query: 246 AMTP----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294 + F++ K ++ + K A++AG+ + S H +R A Sbjct: 185 GRYYTEARPALLKGRSCDALFVSQKKTGISRQLAWMIVKEYASQAGIGHISPHSLRHAFA 244 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGAD 327 T G + G ++ + YT A+ Sbjct: 245 THLVQHGLDLRVVQDMLGHADLNTTQIYTHVAN 277 >gi|229587180|ref|YP_002845681.1| site-specific tyrosine recombinase XerC [Rickettsia africae ESF-5] gi|259710437|sp|C3PLU8|XERC_RICAE RecName: Full=Tyrosine recombinase xerC gi|228022230|gb|ACP53938.1| Tyrosine recombinase XerC [Rickettsia africae ESF-5] Length = 305 Score = 126 bits (316), Expect = 5e-27, Method: Composition-based stats. Identities = 47/287 (16%), Positives = 102/287 (35%), Gaps = 28/287 (9%) Query: 68 PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRS 121 T+++ LI++++K + + ++ IS+ + + I T IR Sbjct: 3 DTSIQALINKWQKYLVLQRNYSNHTVISYNNDLKHFLEFMNYYNSELVTINHIKTADIRL 62 Query: 122 GVESRK------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 T SS + L++++ +++ + + + S++ PK+ + + Sbjct: 63 IRSWLAKRNCDNFTASSISRGLSAVKNFYRFLEKTTQLNSHIIFSIKSPKKTKLLPKALS 122 Query: 176 KEDMQQFKSFW-------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228 ++D+ + + + SGLR S++ HLQN F K Sbjct: 123 EDDVVISLEHIEEYGNVKWIELRNKALLVLIYASGLRISEALSITKLHLQNLEFIRIIGK 182 Query: 229 TGTIITVEL-------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 + ++++L E F +K+ F+ G Sbjct: 183 GSKERIIPWLPIAKNLITQYLEILPYKLGDNEPIFRGKQGKKLQPPVFNRELIKLKHFYG 242 Query: 282 VN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 + +AH R A+ + GA L G K++ ++YTK + Sbjct: 243 LPQHLTAHSFRHSFASHLLEHGADLRSLQELLGHKSLSTTQSYTKTS 289 >gi|152981084|ref|YP_001352164.1| integrase/recombinase [Janthinobacterium sp. Marseille] gi|151281161|gb|ABR89571.1| integrase/recombinase [Janthinobacterium sp. Marseille] Length = 301 Score = 126 bits (316), Expect = 5e-27, Method: Composition-based stats. Identities = 43/284 (15%), Positives = 87/284 (30%), Gaps = 28/284 (9%) Query: 71 LKWLIS-EYRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTK-HIRSGVE 124 + + + LA NS ++ G T + + Sbjct: 12 IDEFCDTLWLED----GLAKNSLEAYRRDLRLFATWLQQERGKSLLAAHTEDLNGYFFAK 67 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 +S+ + L ++ ++ A+RQ + +PCL + K+ + ++ ++ + Sbjct: 68 HATTKATSSNRRLAVLKRFYQLALRQNKIKDDPCLRLRSAKQPPRMPKTLSEAQVEALLA 127 Query: 185 FWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPD 239 + + R E + SGLR ++ + N ++ G + + Sbjct: 128 APDVNTPLGLRDRTMLELMYASGLRVTELVLLKSVEVGMNEGVLRVTGKGGKTRLIPFGE 187 Query: 240 GFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287 + + F+ M F K A A + S H Sbjct: 188 EARAWIERYLKEARGAILNGQMDDALFVTARGGAMTRQMFWTLIKKHAAAADINAPLSPH 247 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +R AT + GA + G + + YT A R RL Sbjct: 248 TLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVA-RERL 290 >gi|24115108|ref|NP_709618.1| site-specific tyrosine recombinase XerC [Shigella flexneri 2a str. 301] gi|30064893|ref|NP_839064.1| site-specific tyrosine recombinase XerC [Shigella flexneri 2a str. 2457T] gi|82779010|ref|YP_405359.1| site-specific tyrosine recombinase XerC [Shigella dysenteriae Sd197] gi|194438678|ref|ZP_03070766.1| tyrosine recombinase XerC [Escherichia coli 101-1] gi|253775565|ref|YP_003038396.1| site-specific tyrosine recombinase XerC [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254163753|ref|YP_003046861.1| site-specific tyrosine recombinase XerC [Escherichia coli B str. REL606] gi|293417277|ref|ZP_06659902.1| tyrosine recombinase XerC [Escherichia coli B185] gi|297521542|ref|ZP_06939928.1| site-specific tyrosine recombinase XerC [Escherichia coli OP50] gi|300904066|ref|ZP_07121946.1| tyrosine recombinase XerC [Escherichia coli MS 84-1] gi|300921478|ref|ZP_07137826.1| tyrosine recombinase XerC [Escherichia coli MS 115-1] gi|300930023|ref|ZP_07145455.1| tyrosine recombinase XerC [Escherichia coli MS 187-1] gi|301303707|ref|ZP_07209828.1| tyrosine recombinase XerC [Escherichia coli MS 124-1] gi|309784527|ref|ZP_07679165.1| tyrosine recombinase XerC [Shigella dysenteriae 1617] gi|312971902|ref|ZP_07786076.1| tyrosine recombinase XerC [Escherichia coli 1827-70] gi|331655496|ref|ZP_08356489.1| tyrosine recombinase XerC [Escherichia coli M718] gi|34222798|sp|Q7ZAL9|XERC_SHIFL RecName: Full=Tyrosine recombinase xerC gi|123769525|sp|Q329Y7|XERC_SHIDS RecName: Full=Tyrosine recombinase xerC gi|24054376|gb|AAN45325.1| site-specific recombinase [Shigella flexneri 2a str. 301] gi|30043153|gb|AAP18875.1| site-specific recombinase [Shigella flexneri 2a str. 2457T] gi|81243158|gb|ABB63868.1| site-specific recombinase [Shigella dysenteriae Sd197] gi|194422482|gb|EDX38481.1| tyrosine recombinase XerC [Escherichia coli 101-1] gi|242379341|emb|CAQ34153.1| site-specific recombinase, acts on cer sequence of ColE1, effects chromosome segregation at cell division, subunit of Xer site-specific recombination system [Escherichia coli BL21(DE3)] gi|253326609|gb|ACT31211.1| tyrosine recombinase XerC [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975654|gb|ACT41325.1| site-specific tyrosine recombinase XerC [Escherichia coli B str. REL606] gi|253979810|gb|ACT45480.1| site-specific tyrosine recombinase XerC [Escherichia coli BL21(DE3)] gi|281603204|gb|ADA76188.1| Tyrosine recombinase xerC [Shigella flexneri 2002017] gi|291431045|gb|EFF04040.1| tyrosine recombinase XerC [Escherichia coli B185] gi|300403946|gb|EFJ87484.1| tyrosine recombinase XerC [Escherichia coli MS 84-1] gi|300411595|gb|EFJ94905.1| tyrosine recombinase XerC [Escherichia coli MS 115-1] gi|300462056|gb|EFK25549.1| tyrosine recombinase XerC [Escherichia coli MS 187-1] gi|300841007|gb|EFK68767.1| tyrosine recombinase XerC [Escherichia coli MS 124-1] gi|308927633|gb|EFP73102.1| tyrosine recombinase XerC [Shigella dysenteriae 1617] gi|310334279|gb|EFQ00484.1| tyrosine recombinase XerC [Escherichia coli 1827-70] gi|313647147|gb|EFS11602.1| tyrosine recombinase XerC [Shigella flexneri 2a str. 2457T] gi|315254176|gb|EFU34144.1| tyrosine recombinase XerC [Escherichia coli MS 85-1] gi|323959066|gb|EGB54735.1| tyrosine recombinase XerC [Escherichia coli H489] gi|323969348|gb|EGB64647.1| tyrosine recombinase XerC [Escherichia coli TA007] gi|331046817|gb|EGI18901.1| tyrosine recombinase XerC [Escherichia coli M718] Length = 298 Score = 126 bits (316), Expect = 5e-27, Method: Composition-based stats. Identities = 42/278 (15%), Positives = 93/278 (33%), Gaps = 21/278 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSG---VESRK 127 + Y + L+ + ++++ + ++G +++ +R+ + Sbjct: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDAAMVRNFAVRSRRKG 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +S L+++R F W V Q + NP V PK + +DM + Sbjct: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI 127 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243 + R E + +GLR S+ ++HL + K + + + Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187 Query: 244 LLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 + ++ F +D ++++A F K G+ + H +R A Sbjct: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 T ++ + G + + YT D L Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 284 >gi|322515579|ref|ZP_08068560.1| tyrosine recombinase XerC [Actinobacillus ureae ATCC 25976] gi|322118382|gb|EFX90648.1| tyrosine recombinase XerC [Actinobacillus ureae ATCC 25976] Length = 331 Score = 126 bits (316), Expect = 5e-27, Method: Composition-based stats. Identities = 41/292 (14%), Positives = 95/292 (32%), Gaps = 24/292 (8%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTPSSA 133 +Y + + ++ +++ + G ++++ +R + SA Sbjct: 43 DYLRIEKQA--SPHTLSNYQRQLLAVSEMFSQAGIGAWQEVNVAAVRWMLTQSHKQGLSA 100 Query: 134 IQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 L ++R F + V+QE + +NP L ++ PK + E + Q + + Sbjct: 101 KSIGLRLVALRQWFNYLVQQEQMTVNPALGIKSPKVGKHLPKNIDAEQIGQLLNTETSEP 160 Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAG-VQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246 + E + SGLR S+ N K + + ++ L Sbjct: 161 LELRDLAMMELMYSSGLRLSELQGLDLGDMDLNAREVKVLGKGNKERILPIGTKALQALQ 220 Query: 247 MTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297 G+ F ++ +++ + + K G+ + H +R AT Sbjct: 221 AWLGGRHDFNPQDNALFLNKRGGRLSHRSIQLAMQKWGKKQGLETHLHPHKLRHSFATHM 280 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLG--IKNSRRISSVVDSDD 347 +A + G ++ + YT D L + + ++ Sbjct: 281 LEASGDLRAVQELLGHSSLSTTQIYT-SLDFQHLAQIYDAAHPRARRKKEEE 331 >gi|153009120|ref|YP_001370335.1| phage integrase family protein [Ochrobactrum anthropi ATCC 49188] gi|151561008|gb|ABS14506.1| phage integrase family protein [Ochrobactrum anthropi ATCC 49188] Length = 361 Score = 126 bits (316), Expect = 5e-27, Method: Composition-based stats. Identities = 72/346 (20%), Positives = 124/346 (35%), Gaps = 30/346 (8%) Query: 1 MTPSLR------LPPFVTKERTRHGKIIYYFRKGHGR-----RIRLP-YPHESTFIPAYM 48 M+ R LP V + +R GK +Y++ G G R++LP PH F A Sbjct: 1 MSRKHRRPATVSLPKGVHRVVSR-GKEYFYYQTGRGTNHVGERVKLPNDPHSPEFWQAVR 59 Query: 49 SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH--WGSLAVNSRISFESYFDQIIRKS 106 A S T+ LI Y + LAV++ + + + Sbjct: 60 QA---------QGISGPVVDGTIGALIDAYEAAWPGLPRKLAVSTTEQYRRQLRIVRKVW 110 Query: 107 GDFDYRKITTKHIRSGVESRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165 GD + H+++ +E TP +A L ++R + +WA + Sbjct: 111 GDLQAEALRPSHVQALMEKIGATTPGAANNLLDALRAMCRWASGPRELLGRDPTQGVAHF 170 Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225 ++ EG +PWT + + ++ A+ Y+G R SD R G + FS+ Sbjct: 171 QQGEGHKPWTPDQLAFADKNFT--GMLHRAYVLARYTGQRISDVVRLGWNDIDEGGFSLP 228 Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--N 283 +KTG + +A F ++ + W T V + Sbjct: 229 QKKTGVRPWCPIFPELESEMAKWEKRPGPFLYQDNGKPFTTNLMWKWLNDARTGQPVIED 288 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 HG+R + G +A ++ G + E Y++ ADR Sbjct: 289 VVWHGLRANAVIRLRQDGFSAPQICDAVG-MSPQMVERYSRYADRK 333 >gi|121594962|ref|YP_986858.1| phage integrase family protein [Acidovorax sp. JS42] gi|330824224|ref|YP_004387527.1| integrase family protein [Alicycliphilus denitrificans K601] gi|120607042|gb|ABM42782.1| phage integrase family protein [Acidovorax sp. JS42] gi|321116506|dbj|BAJ72205.1| integrase [Acidovorax sp. KKS102] gi|329309596|gb|AEB84011.1| integrase family protein [Alicycliphilus denitrificans K601] Length = 400 Score = 126 bits (316), Expect = 5e-27, Method: Composition-based stats. Identities = 58/365 (15%), Positives = 116/365 (31%), Gaps = 30/365 (8%) Query: 7 LPPFVTKERTRHGKIIYYFRKGH----GRRIRLPYPHESTFIPAY-----MSALTGSTPK 57 L P + T G+ ++ + R+ L E T A A Sbjct: 27 LVPGFLCKITPTGRKVFMVQYRTNSGVRRKPALGQFGELTVEQARSLAQDWLAEVRRGGD 86 Query: 58 REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITT 116 + +K T+K L + +++ S++ D I G ++T Sbjct: 87 PGLDKAEARKAPTVKELCGRFMDDHSKPHNKPSTQASYQYQIDNFVIPAFGSKKVHEVTR 146 Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 I + ++ + +P+ A + L+ +R +F A Y PK +G Sbjct: 147 HDITALMKRMERSPTQANRVLSLVRKMFNLAELWGYRPDGSNPCRHVPKYPEKGSTRLIT 206 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 ++ + + ++ + +R A + + + G ++ + Sbjct: 207 DEQMVSLFAYLDKAEAEGLEHPIYLLAVRLQFEFAARMSEILLLQWDWLDLPNGRVVWPD 266 Query: 237 LPD---------GFMKLLAMTPIGKETFFINN----DKQKMNATQFSIWFKAKATKAGVN 283 +LL P + ++ + + + ++ +AGV Sbjct: 267 SKTGDMSKPLSEEARRLLTNAPRYGNSPYVCPAILDHDKPLGPHSYYQAWRRILDRAGVP 326 Query: 284 K-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342 K HG+R SAT A++G MA KTV Y D R+ + + Sbjct: 327 KVGTHGIRHRSATDIANSGIPVKVGMALTAHKTVAMFMRYVHTED------DPVRKAAEL 380 Query: 343 VDSDD 347 V S Sbjct: 381 VASRR 385 >gi|323358629|ref|YP_004225025.1| site-specific recombinase XerD [Microbacterium testaceum StLB037] gi|323275000|dbj|BAJ75145.1| site-specific recombinase XerD [Microbacterium testaceum StLB037] Length = 309 Score = 126 bits (316), Expect = 5e-27, Method: Composition-based stats. Identities = 43/290 (14%), Positives = 81/290 (27%), Gaps = 35/290 (12%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKI---TTKHIRSGVESR 126 L+ + Y + L+ ++ ++ I I T I R Sbjct: 3 LERAVEGYLRHVALERGLSDHTVAAYRRDLAVYIEWLRGRGVDAIETVTPALIADFAAER 62 Query: 127 K-----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 SS + +S+R L ++ V + V +P + PK + T + + Sbjct: 63 ASAEPPPASSSLARLQSSVRGLHRFLVLEGRVDDDPSGRLRPPKAPRRLPKALTIGQVNE 122 Query: 182 FKSFWSEGS-------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228 + R E L +G R S+ + V + K Sbjct: 123 LLDAAGPAPGSSDASVAEPAAVRDRALLELLYATGARVSEIVQLDVDDTVHGDLLRVRGK 182 Query: 229 TGTIITVELPDGFMKLLAMTPIGKETF-----------FINNDKQKMNATQFSIWFKAKA 277 V + + F+ ++ + +A A Sbjct: 183 GDKERVVPVGSYARAAIEAYLTRVRPALAAKGRATPRLFLGVRGAPLSRQSAWLIIQAAA 242 Query: 278 TKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 +A + + S H +R AT GA + G +V + YT Sbjct: 243 ERASLTAHVSPHTLRHSFATHLLQGGADVRVVQELLGHASVATTQIYTHV 292 >gi|319401458|gb|EFV89668.1| tyrosine recombinase XerC [Staphylococcus epidermidis FRI909] Length = 296 Score = 126 bits (316), Expect = 5e-27, Method: Composition-based stats. Identities = 35/265 (13%), Positives = 93/265 (35%), Gaps = 20/265 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVESRKHTPSSAIQFLTS 139 + + + S+ Q + T ++ + + S + ++ + +++ Sbjct: 16 RNFSAYTLKSYHDDLVQFNNFLEREHLQLETFEYKDARNYLAFLYSNQLKRTTVSRKIST 75 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPRLA 195 +R +++ + Q+ INP + + PK++ + + +E+M Q + +G + ++ Sbjct: 76 LRTFYEFWMTQDNSIINPFVQLVHPKKEKYLPQFFYEEEMEALFQTVEHDNKKGIRDKVI 135 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254 E L +G+R S+ ++ + N K + + + + + Sbjct: 136 IELLYATGIRVSELINIKLKDIDMNLPGVKVLGKGNKERFIPFGEFCRQSIERYLEEFQP 195 Query: 255 FFINNDKQ--------KMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGATA 304 + N + + AGV + H +R AT + GA Sbjct: 196 KQLANHDYLIVNMKGDPITERGVRYVLNDVVKRTAGVNDIHPHKLRHTFATHLLNQGADL 255 Query: 305 HELMATYGWKTVDQAETYTKGADRI 329 + + G + YT +++ Sbjct: 256 RTVQSLLGHVNLSTTGRYTHVSNQQ 280 >gi|222529021|ref|YP_002572903.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725] gi|222455868|gb|ACM60130.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725] Length = 400 Score = 126 bits (316), Expect = 5e-27, Method: Composition-based stats. Identities = 56/366 (15%), Positives = 115/366 (31%), Gaps = 50/366 (13%) Query: 26 RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85 R +GR+ R + ++ + + TTLK ++ + Sbjct: 31 RDENGRQKRQYFYGKT--RQEVAEKIAKTLNDLANGVYVDPAKTTLKDWLNTWLWEYKKQ 88 Query: 86 SLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMR 141 +L ++ + Y I G + + + +H+++ ++ S+ Q T + Sbjct: 89 TLRPSTFKDYLCYIERHINPAIGHYKLKDLRPEHLQALYNAKYQEGLSISTIKQIHTVLH 148 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201 A++ V N + PK K + + QQ EG + + AF L Sbjct: 149 SALDQALKNGLVNRNVSEATTLPKGKPKREIRILSLEEQQRFIAALEGERLKTAFLVELA 208 Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------------------------ITVE 236 SGLR + + + I+ +++ V Sbjct: 209 SGLRIGELLALRWKDVNFKDGYIEVRRSLQRVRIFDGGNSKKTALAFQEPKTEAGKRIVP 268 Query: 237 LPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 LP ++ L + F ++ F F KAG+ Sbjct: 269 LPPVIIEELKQHRKKQLEEKLKAGALYEDNDLVFATELGTPIDPRNFERLFYRIREKAGL 328 Query: 283 NKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRI 339 +KS H +R AT +A + G K + Y+ I+ + ++ Sbjct: 329 DKSVNFHALRHTYATRLLEANEHPKVVQELLGHKDISTTLNIYSHVMPEIKKA--AAMKL 386 Query: 340 SSVVDS 345 +S+ ++ Sbjct: 387 NSLFEN 392 >gi|194445824|ref|YP_002043179.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|200387005|ref|ZP_03213617.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|194404487|gb|ACF64709.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|199604103|gb|EDZ02648.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 300 Score = 126 bits (316), Expect = 5e-27, Method: Composition-based stats. Identities = 46/282 (16%), Positives = 96/282 (34%), Gaps = 21/282 (7%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSG---V 123 L +S + + L+ + +++ D II +G+ +++ +RS Sbjct: 6 LSQDVSRFLRYLGVERQLSPITLQNYQRQLDAIIALAGETGLKSWQQCDAAIVRSFAVRS 65 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + P+S L+++R F W V Q + NP V PK + +D+ + Sbjct: 66 RRKGLGPASLALRLSALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKNIDVDDVNRLL 125 Query: 184 SFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD 239 + R E + +GLR S+ ++HL + K + + Sbjct: 126 DIDLNDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLPIGR 185 Query: 240 GFMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVR 290 + + + F + + ++++A F K G+ + H +R Sbjct: 186 NAVTWIEHWLDLRGLFASDEEALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLR 245 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 AT ++ + G + + YT D L Sbjct: 246 HSFATHMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 286 >gi|227498489|ref|ZP_03928635.1| tyrosine recombinase xerC [Acidaminococcus sp. D21] gi|226903947|gb|EEH89865.1| tyrosine recombinase xerC [Acidaminococcus sp. D21] Length = 302 Score = 126 bits (316), Expect = 5e-27, Method: Composition-based stats. Identities = 47/305 (15%), Positives = 98/305 (32%), Gaps = 36/305 (11%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126 L + + + + + N+ ++++ G + +++ IRS + Sbjct: 5 LDPMAERFLRYLRVERNDSPNTILNYKDDLIAFSVFLSGRGKATWLEVSLLDIRSYLAQL 64 Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + + ++S+R +++ +R+ NP V+ PK + + + +M Sbjct: 65 HREEKARRTIARRISSLRSFYRYLMREGLTDKNPFTKVKTPKLEKKLPVFLEEFEMNHLL 124 Query: 184 S----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP 238 G + R EFL +G R S+ + L + K V L Sbjct: 125 ELPDLSTELGQRDRALLEFLYSTGCRVSELVGLTLTRLDLSNRYALLLGKGHKERIVPLG 184 Query: 239 DGFMKLLA-------------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--N 283 ++ + + F+N+ + A A + + Sbjct: 185 HPCIRAMNAYLTGARRVLMEKYEVPSHDFIFVNHRGTPLTARSVRRILDRYVEMASIQKH 244 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343 S H +R AT D GA + G ++ + YT + RI+SV Sbjct: 245 VSPHTIRHTFATHLLDHGADLRSVQELLGHASLSTTQIYTHVT---------ADRIASVY 295 Query: 344 DSDDP 348 P Sbjct: 296 KKHHP 300 >gi|17547263|ref|NP_520665.1| site-specific tyrosine recombinase XerD [Ralstonia solanacearum GMI1000] gi|34222936|sp|Q8XWD0|XERD_RALSO RecName: Full=Tyrosine recombinase xerD gi|17429565|emb|CAD16251.1| probable integrase/recombinase protein [Ralstonia solanacearum GMI1000] Length = 308 Score = 126 bits (316), Expect = 5e-27, Method: Composition-based stats. Identities = 47/282 (16%), Positives = 86/282 (30%), Gaps = 24/282 (8%) Query: 73 WLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHT 129 I + + LA N+ ++ + + + +R Sbjct: 17 EAIQRFCDALWLEDGLARNTLDAYRRDLTLYAQWLAGRGKALDQTEDVDLSDYFAARHED 76 Query: 130 --PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 S+A + T + F+WA+R+ V+ +P + K+ + ++ ++ + Sbjct: 77 SLASTANRRRTVFKRFFQWALREHLVSADPTRLLSTAKQPPRVPKTLSEAQVEALIAAPD 136 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGF 241 G + R E + SGLR S+ + N ++ V Sbjct: 137 VDAPLGLRDRAMIELMYASGLRVSEIVALKTVEVGLNEGVVRVIGGKGGKDRLVPFGAEA 196 Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289 L T F+ M F K A +A + S H + Sbjct: 197 GDWLRRYLRDGRTALLGERTADALFVTARGDGMTRQAFWYLIKRYAQRADIHAPLSPHTL 256 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 R AT + GA + G + + YT A R RL Sbjct: 257 RHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVA-RERL 297 >gi|85708305|ref|ZP_01039371.1| putative integrase [Erythrobacter sp. NAP1] gi|85689839|gb|EAQ29842.1| putative integrase [Erythrobacter sp. NAP1] Length = 351 Score = 126 bits (316), Expect = 5e-27, Method: Composition-based stats. Identities = 70/354 (19%), Positives = 119/354 (33%), Gaps = 33/354 (9%) Query: 12 TKERTRHGK-IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 K+R GK + YY+ G R+ P FI +Y +AL Sbjct: 11 VKKRLASGKTVTYYYAWKGGPRLE-GEPGSPKFIESYNAALATRFTTPPDQ--------- 60 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI----TTKHIRSGVESR 126 L+ ++ +Y+ S + LA +R ++ + I + GDF + T + E Sbjct: 61 LRSILKQYQASHSFTDLADRTRQDYKKHLRTIEAEYGDFPIEALADRRTRGEFLAWRERL 120 Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 K++ A + + WA + + +NPC R R T + WT ED Q + + Sbjct: 121 AKNSRRQADYAYAVLARVLSWASNRGFAPLNPCERPGRLYRSTRSTKVWTAEDEQ--RFY 178 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 L L++G R D + QKT + + L Sbjct: 179 KHAPRHLHLPLLMALWTGQRQGDLLALRWSAYDGQYLRLTQQKTKVRVQIPAGKPLKAEL 238 Query: 246 A----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294 +N A F ++ +AG+ + + H +R + Sbjct: 239 DALREARTKPANELAANSHILLNTRHSPWTAAGFRASWRKACKQAGIEDLTFHDLRGTAV 298 Query: 295 TISADAGATAHELMATYGWK--TVDQAETYTKGADR-IRLGIKNSRRISSVVDS 345 T A AG T E+ G V + DR LG R++ + + Sbjct: 299 TRLAIAGCTIPEIATITGHSLKDVGTILD-SHYLDRNSALGESAIRKLEDLDGA 351 >gi|191174259|ref|ZP_03035768.1| tyrosine recombinase XerC [Escherichia coli F11] gi|300979372|ref|ZP_07174530.1| tyrosine recombinase XerC [Escherichia coli MS 200-1] gi|190905442|gb|EDV65072.1| tyrosine recombinase XerC [Escherichia coli F11] gi|300308044|gb|EFJ62564.1| tyrosine recombinase XerC [Escherichia coli MS 200-1] gi|324014716|gb|EGB83935.1| tyrosine recombinase XerC [Escherichia coli MS 60-1] Length = 298 Score = 126 bits (316), Expect = 5e-27, Method: Composition-based stats. Identities = 42/278 (15%), Positives = 93/278 (33%), Gaps = 21/278 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSG---VESRK 127 + Y + L+ + ++++ + ++G +++ +R+ + Sbjct: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIIHFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +S L+++R F W V Q + NP V PK + +DM + Sbjct: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMSRLLDIDI 127 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243 + R E + +GLR S+ ++HL + K + + + Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187 Query: 244 LLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 + ++ F +D ++++A F K G+ + H +R A Sbjct: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 T ++ + G + + YT D L Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 284 >gi|198244691|ref|YP_002217878.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205354490|ref|YP_002228291.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207859151|ref|YP_002245802.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|197939207|gb|ACH76540.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205274271|emb|CAR39290.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206710954|emb|CAR35322.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326625666|gb|EGE32011.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326629624|gb|EGE35967.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 300 Score = 126 bits (316), Expect = 6e-27, Method: Composition-based stats. Identities = 46/282 (16%), Positives = 96/282 (34%), Gaps = 21/282 (7%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSG---V 123 L +S + + L+ + +++ D II +G+ +++ +RS Sbjct: 6 LSQDVSRFLRYLGVERQLSPITVQNYQRQLDAIIALAGETGLKSWQQCDAAIVRSFAVRS 65 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + P+S L+++R F W V Q + NP V PK + +D+ + Sbjct: 66 RRKGLGPASLALRLSALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKNIDVDDVNRLL 125 Query: 184 SFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD 239 + R E + +GLR S+ ++HL + K + + Sbjct: 126 DIDLNDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLPIGR 185 Query: 240 GFMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVR 290 + + + F + + ++++A F K G+ + H +R Sbjct: 186 NAVTWIEHWLDLRGLFASDEEALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLR 245 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 AT ++ + G + + YT D L Sbjct: 246 HSFATHMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 286 >gi|295396859|ref|ZP_06806987.1| tyrosine recombinase XerC [Aerococcus viridans ATCC 11563] gi|294974885|gb|EFG50584.1| tyrosine recombinase XerC [Aerococcus viridans ATCC 11563] Length = 311 Score = 126 bits (316), Expect = 6e-27, Method: Composition-based stats. Identities = 39/287 (13%), Positives = 86/287 (29%), Gaps = 30/287 (10%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-- 128 +K L S+Y + + ++ + D D ++ R + Sbjct: 6 IKNLFSDYLTHE--KQYSPETIKAYMADLDNFQAFMKDAGIAQLDQVAYRDIRIYLGNLQ 63 Query: 129 ----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + S + L+S+R + + +E V+ NP V+ K + + + ++Q Sbjct: 64 RGGLSRKSISRHLSSLRSAYNLLLDRELVSENPFNYVKTAKTGLKLPDFFYESEIQSLFD 123 Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239 + R EFL +G R S+ + + + K V + Sbjct: 124 SVQGSDPIALRNRALLEFLYGTGARVSEVRDLAINQVDLTADMVLLRGKGNKDRYVPIGS 183 Query: 240 GFMKLL---------------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG--V 282 L F+N +++ + + + + Sbjct: 184 FCHDALVDYLENGRSQLMAKGHYEDNEHVFLFVNYKGEQLTSQGIAYILDQIVKNSATTL 243 Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + H +R AT + GA + G ++ + YT + Sbjct: 244 SIHPHKLRHSFATHLLNNGADIRTVQELLGHASLSTTQIYTHLSKEK 290 >gi|281602227|gb|ADA75211.1| Tyrosine recombinase xerD [Shigella flexneri 2002017] Length = 273 Score = 126 bits (316), Expect = 6e-27, Method: Composition-based stats. Identities = 38/259 (14%), Positives = 85/259 (32%), Gaps = 23/259 (8%) Query: 94 SFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRKHTPSSAIQFLTSMRVLFKWAV 148 ++ ++ T + + + + +S+ + L+++R LF++ Sbjct: 3 AYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKATSSARLLSAVRRLFQYLY 62 Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG----SQPRLAFEFLLYSGL 204 R+++ +P + PK + ++ +++ + + E L +GL Sbjct: 63 REKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAMLEVLYATGL 122 Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETF-------- 255 R S+ + + ++ V L + + L + Sbjct: 123 RVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSID 182 Query: 256 --FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMAT 310 F + Q+M F K A AG++ S H +R AT + GA + Sbjct: 183 VLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQML 242 Query: 311 YGWKTVDQAETYTKGADRI 329 G + + YT A Sbjct: 243 LGHSDLSTTQIYTHVATER 261 >gi|308173576|ref|YP_003920281.1| site-specific tyrosine recombinase [Bacillus amyloliquefaciens DSM 7] gi|307606440|emb|CBI42811.1| site-specific tyrosine recombinase for chromosome partitioning [Bacillus amyloliquefaciens DSM 7] gi|328553491|gb|AEB23983.1| site-specific tyrosine recombinase XerC [Bacillus amyloliquefaciens TA208] gi|328911717|gb|AEB63313.1| site-specific tyrosine recombinase for chromosome partitioning [Bacillus amyloliquefaciens LL3] Length = 305 Score = 126 bits (316), Expect = 6e-27, Method: Composition-based stats. Identities = 37/283 (13%), Positives = 90/283 (31%), Gaps = 27/283 (9%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI------TTKHIRSGVE 124 L EY + + + + +++ + ++ + + + + Sbjct: 8 FLKLFVEYLQIE--KNYSQYTIVNYVNSIEEFGMFLHAQNINGLNEAAYHDVRIFLTEAY 65 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQ 180 + + + + ++++R +K+ +R++ V NP V PK++ + +++ Sbjct: 66 EKGLSRKTISKKISALRSFYKFLMREKLVEENPFQLVHLPKQEKRIPKFLYEKELEELFA 125 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD 239 G + + E L +G+R S+ C V L + ++ K + Sbjct: 126 VSDRSQPSGMRDQALLELLYATGMRVSECCTLTVSDLDLFMDTVLVHGKGRKQRYIPFGS 185 Query: 240 GFMKLLAMTPIGKETF------------FINNDKQKMNATQFSIWFKAKATKAG--VNKS 285 L + F+N + A KA ++ Sbjct: 186 YARDALELYINSGRQCLLEKAKEPHDVLFVNQRGGPLTARGIRYILSGLVKKASGTLHIH 245 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 H +R AT + GA + G + + YT + Sbjct: 246 PHMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQIYTHVSKE 288 >gi|157964965|ref|YP_001499789.1| site-specific tyrosine recombinase XerC [Rickettsia massiliae MTU5] gi|166918900|sp|A8F2V6|XERC_RICM5 RecName: Full=Tyrosine recombinase xerC gi|157844741|gb|ABV85242.1| Tyrosine recombinase XerC [Rickettsia massiliae MTU5] Length = 305 Score = 126 bits (316), Expect = 6e-27, Method: Composition-based stats. Identities = 45/287 (15%), Positives = 102/287 (35%), Gaps = 28/287 (9%) Query: 68 PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRS 121 T+++ LI++++K + + ++ IS+ + + ++ I T IR Sbjct: 3 DTSIQALINKWQKYLVLQRNYSNHTVISYNNDLKHFLEFMNYYNSEFVTINHIKTADIRL 62 Query: 122 GVESRKHTP------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 SS + L++++ +++ + + + S++ PK+ + + Sbjct: 63 IRSWLAKRHCDNFTTSSISRGLSAVKNFYRFLEKTTQLNSHIIFSIKSPKKTKLLPKALS 122 Query: 176 KEDMQQFKSFW-------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228 ++D+ + + + SGLR S++ HLQN F K Sbjct: 123 EDDVVISLEHIEEYGNVKWVELRNKALLVLIYASGLRISEALSITKLHLQNLEFIRIIGK 182 Query: 229 TGTIITVEL-------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 + ++++L E F +K+ F+ G Sbjct: 183 GSKERIIPWLPIAKNLITQYLEILPYKLGDNEPIFRGKQGKKLQPPVFNRELIKLKHFYG 242 Query: 282 VN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 + +AH R A+ + GA + G K++ + YTK + Sbjct: 243 LPQHLTAHSFRHSFASHLLEHGADLRSIQELLGHKSLSTTQNYTKTS 289 >gi|227114723|ref|ZP_03828379.1| site-specific tyrosine recombinase XerC [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 311 Score = 126 bits (316), Expect = 6e-27, Method: Composition-based stats. Identities = 44/278 (15%), Positives = 91/278 (32%), Gaps = 21/278 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESRKHTP 130 + + + L+ ++ S+ I+ +G D+R + +RS V K Sbjct: 20 VDAFLRYLKVERQLSPLTQTSYLRQLSAVITILSAAGVADWRNLDASGVRSVVSRSKRDG 79 Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 SS L+++R W V + + NP V P+ + ++ + Sbjct: 80 LHSSSLALRLSALRSFLDWMVSRGVLVANPAKGVSAPRAGRPLPKNMDVDETNRLLEIDL 139 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243 + + R E + +GLR ++ QH+ + K + + + Sbjct: 140 DDPLAVRDRTMLEVMYGAGLRLAELVGMDYQHIDLASGEVWVMGKGSKERKLPIGKTAVT 199 Query: 244 LLAMTP-------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 L + FI+N ++++ F K G+ + H +R A Sbjct: 200 WLERWMALRELFGPQDDAVFISNQGRRISMRNVQKRFAEWGIKQGINSHVHPHKLRHSFA 259 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 T ++ + G + + YT D L Sbjct: 260 THMLESSGDLRAVQELLGHANLTTTQIYTH-LDFQHLA 296 >gi|163782731|ref|ZP_02177727.1| phage integrase family protein [Hydrogenivirga sp. 128-5-R1-1] gi|159881852|gb|EDP75360.1| phage integrase family protein [Hydrogenivirga sp. 128-5-R1-1] Length = 351 Score = 126 bits (316), Expect = 6e-27, Method: Composition-based stats. Identities = 50/324 (15%), Positives = 97/324 (29%), Gaps = 16/324 (4%) Query: 17 RHGKIIYY-FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75 + GK+ Y+ F R T + + R +++ TT + Sbjct: 10 KRGKVFYFEFMYKGQRYYEKIGVVSKTVAKEIANEIRSRI-IRGEYIPQKERKTTFSDAV 68 Query: 76 SEYRKSAHWGSLA-VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPS 131 Y + S A S+ ++ G +I+T + S + R P Sbjct: 69 RVYIEWYRKKSTAREKSKEENIRRARRLEEFFGSRKLSQISTFLVESYKKKRLEEGVKPQ 128 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 + L + + + A + E +R ++ + Q+ S E + Sbjct: 129 TINMELNILGSILRRAKEAGLFDGELPKIEKFRNADRERLRFLSEREAQRLISACPEWFK 188 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----TIITVELPDGFMKLLA- 246 P + F L +GLR + + + I ++ + + + KLL Sbjct: 189 PVVIFA--LNTGLRAGEIFSLRWEDVDFERGVITVREASSKSGKVRKLPMNATVKKLLQG 246 Query: 247 --MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGAT 303 G K + FK KAG+ + H +R A+ A Sbjct: 247 LERKEHGYIFTNRFGLPYKYEDKTYRRVFKTACEKAGIKDFRFHDLRHTFASWVAMNSKD 306 Query: 304 AHELMATYGWKTVDQAETYTKGAD 327 + + G + + Y D Sbjct: 307 IYAVQNLLGHSSPSVTKRYAHLTD 330 >gi|300858389|ref|YP_003783372.1| tyrosine recombinase [Corynebacterium pseudotuberculosis FRC41] gi|300685843|gb|ADK28765.1| tyrosine recombinase [Corynebacterium pseudotuberculosis FRC41] gi|302206103|gb|ADL10445.1| site-specific tyrosine recombinase XerD [Corynebacterium pseudotuberculosis C231] gi|302330656|gb|ADL20850.1| site-specific tyrosine recombinase XerD [Corynebacterium pseudotuberculosis 1002] gi|308276340|gb|ADO26239.1| site-specific tyrosine recombinase XerD [Corynebacterium pseudotuberculosis I19] Length = 310 Score = 126 bits (316), Expect = 6e-27, Method: Composition-based stats. Identities = 43/295 (14%), Positives = 86/295 (29%), Gaps = 37/295 (12%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKI---TTKHIRSGVESRKHT 129 + ++ N+ ++ + + + T++ + S V + Sbjct: 7 AADRWLTHLAIERGVSANTLSNYRRDVQRYLDWIESRGIDDLGILTSRDVESYVLDLRRG 66 Query: 130 ----------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED- 178 SSA + L R L K+A+ + ++++ V P + + Sbjct: 67 DPDTGKQPLAASSAGRALVVARGLHKFAMMEGLISVDVAGEVSPPSTGRHLPDTLSVTEV 126 Query: 179 ------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----NNIFSIKTQK 228 + E + E L +G R S+ V + K Sbjct: 127 EELISAIPTDNIATPEDLRDAALIELLYGTGARISEIMNLTVDEVTVLEETEGMLRIVGK 186 Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM---------NATQFSIWFKAKATK 279 V + K L + + + K+ A + Sbjct: 187 GDKHRIVPVGSMAQKALRRYLVRARPQLTKGKSHALFLNKRGGALSRQSAWQILKSSARR 246 Query: 280 AGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRL 331 AGV + S H +R A+ + GA + G +V + YT AD +R+ Sbjct: 247 AGVQKDISPHTLRHSYASHLLEGGADVRVVQELLGHSSVTTTQIYTHITADNLRI 301 >gi|297543544|ref|YP_003675846.1| integrase family protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841319|gb|ADH59835.1| integrase family protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 373 Score = 126 bits (316), Expect = 6e-27, Method: Composition-based stats. Identities = 56/370 (15%), Positives = 122/370 (32%), Gaps = 47/370 (12%) Query: 17 RHGKIIYYF----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 + G R +G+R + T A AL K E TL+ Sbjct: 7 KRGTTYSIVVDVGRDENGKRKQKWISGFKTKKEA-EKALAEIIAKIEKNEFIEPSKITLQ 65 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE---SRKH 128 I+E+ K A + IS +S + II G + +K+ I+ ++ Sbjct: 66 QFINEWLKIYGEPKWAPKTLISNKSLINNYIIPNLGHIELQKLKPVEIQKFYNFLKEKQL 125 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + ++ + + K+AV+ +Y+A NPC VE PK+ + W E +++ + Sbjct: 126 SNTTVNYVHKLLNQVLKFAVKWQYIAKNPCELVEAPKKDKKEFVTWNFEHVKKA-KKIFK 184 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF------- 241 + + L++GLR + C + + +I ++T I Sbjct: 185 DTPIYIHVMIALHTGLRLGEICGLRWEDIDFKNQTITVRRTAQRIDGRFIFKEPKTETSK 244 Query: 242 ---------MKLLAMTPIGKETFFINNDKQKMN----------------ATQFSIWFKAK 276 +++L + + ++ + + FK Sbjct: 245 GIIAIPDFLVQILKQEKNKQLQNKLIFGEKYITEYEGFISVWEDGRFKEPDYVTKKFKKI 304 Query: 277 A-TKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKGADRIRLGI 333 ++ + H +R AT+ +G + + Y+ + + Sbjct: 305 LQKQSEIPVIRFHDLRHTHATLMLRSGVDLKTISKRLRHGRISTTADFYSHV--DLEMER 362 Query: 334 KNSRRISSVV 343 + R++ + + Sbjct: 363 EALRKLEANL 372 >gi|148978770|ref|ZP_01815150.1| site-specific tyrosine recombinase XerC [Vibrionales bacterium SWAT-3] gi|145962191|gb|EDK27475.1| site-specific tyrosine recombinase XerC [Vibrionales bacterium SWAT-3] Length = 310 Score = 126 bits (316), Expect = 6e-27, Method: Composition-based stats. Identities = 39/276 (14%), Positives = 95/276 (34%), Gaps = 23/276 (8%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRS---GVESRKHTP 130 EY +S L+++++ +++ + + G D+R++ +R Sbjct: 22 EYLRSE--KGLSLHTQRNYKQQLETMAEHLVTLGLKDWRQVDAAWVRQLASKGMRDGMKA 79 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 SS L+S+R F + V + + NP V P+++ + +++ Q + Sbjct: 80 SSIATRLSSLRSFFDFLVLRGEITANPAKGVSAPRKQRPLPKNLDVDEVGQLLDVNEDDP 139 Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLA 246 + R E + +GLR ++ ++ + + I+ + + Sbjct: 140 LSIRDRAMMEVMYGAGLRLAELVGINLKDVLSRQGEIRVIGKGDKERKAPFSGLAKEWVD 199 Query: 247 MTPIGK--------ETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296 + + F++ +++ + K V + S H +R AT Sbjct: 200 KWLRVRGELASPGEDALFVSKLGTRISHRSVQKRMEEWGKKQSVASHISPHKLRHSFATH 259 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 ++ + G + + + YT D L Sbjct: 260 VLESSQNLRTVQELLGHENISTTQVYTH-LDFQHLA 294 >gi|194434030|ref|ZP_03066300.1| tyrosine recombinase XerC [Shigella dysenteriae 1012] gi|194417688|gb|EDX33787.1| tyrosine recombinase XerC [Shigella dysenteriae 1012] gi|320178102|gb|EFW53082.1| Tyrosine recombinase XerC [Shigella boydii ATCC 9905] gi|332084672|gb|EGI89860.1| tyrosine recombinase XerC [Shigella boydii 5216-82] gi|332084963|gb|EGI90145.1| tyrosine recombinase XerC [Shigella dysenteriae 155-74] Length = 298 Score = 126 bits (316), Expect = 6e-27, Method: Composition-based stats. Identities = 42/278 (15%), Positives = 94/278 (33%), Gaps = 21/278 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSG---VESRK 127 + Y + L+ + ++++ + ++G ++++ +R+ + Sbjct: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLKNWQQCDVTMVRNFAVRSRRKG 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +S L+++R F W V Q + NP V PK + +DM + Sbjct: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI 127 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243 + R E + +GLR S+ ++HL + K + + + Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187 Query: 244 LLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 + ++ F +D ++++A F K G+ + H +R A Sbjct: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 T ++ + G + + YT D L Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 284 >gi|68171293|ref|ZP_00544693.1| Phage integrase:Phage integrase, N-terminal SAM-like [Ehrlichia chaffeensis str. Sapulpa] gi|88658163|ref|YP_506998.1| tyrosine recombinase XerD [Ehrlichia chaffeensis str. Arkansas] gi|67999274|gb|EAM85923.1| Phage integrase:Phage integrase, N-terminal SAM-like [Ehrlichia chaffeensis str. Sapulpa] gi|88599620|gb|ABD45089.1| tyrosine recombinase XerD [Ehrlichia chaffeensis str. Arkansas] Length = 309 Score = 126 bits (316), Expect = 6e-27, Method: Composition-based stats. Identities = 36/291 (12%), Positives = 94/291 (32%), Gaps = 36/291 (12%) Query: 74 LISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SR 126 ++ + ++ ++ N+ S+ + + + D +T I + + Sbjct: 6 YVNIFLEAIVAEKHVSHNTYQSYRTDLLGLCKFIDRNDL-LLTDASIHELQDYIRFLYEK 64 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ----- 181 + ++ + +++++ L+ + R + +P + ++ PK + + E++ Sbjct: 65 GYKANTVSRKISAIKNLYGFLYRDNIIENDPTVYLDSPKLSRSLPKTLSYEEVNILLDVA 124 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 +G + L SG+R S+ + ++ + T+ I + Sbjct: 125 ALDVSPDGRRINAIVNILYSSGIRISELVYLKFREVREALDDGDTEICHMKIQGKAKKER 184 Query: 242 MKLLAM--------------------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 + LL + + F + + K A AG Sbjct: 185 IILLNSSAVTSIQKYMEVYEYFIPNGYKMSQWLFPGTKFDNPVTRQRVGQLLKNLAMNAG 244 Query: 282 V---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + + S H +R AT + G+ + G + + YT A Sbjct: 245 INVTHVSPHKLRHSFATHLLNNGSDIVFIQKMLGHANLATTQIYTHVASER 295 >gi|262369523|ref|ZP_06062851.1| site-specific tyrosine recombinase [Acinetobacter johnsonii SH046] gi|262315591|gb|EEY96630.1| site-specific tyrosine recombinase [Acinetobacter johnsonii SH046] Length = 308 Score = 126 bits (316), Expect = 6e-27, Method: Composition-based stats. Identities = 46/294 (15%), Positives = 95/294 (32%), Gaps = 32/294 (10%) Query: 69 TTLK--WLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-------SGDFDYRKITTKHI 119 T + L++ + K + + ++ ++E + GD + + + I Sbjct: 1 MTFEPMQLLAMWLKQREIQNQSAHTLQAYERDVSDFLLFCEQKKLELGDVEATDL-REFI 59 Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 VE ++ + SS + L+S+R KWA + +++A NP + ++ E + Sbjct: 60 AQKVEYQQLSSSSLQRMLSSIRQFMKWAEQGQHLAFNPADDFQLKRKPRPLPGLVDIETI 119 Query: 180 QQFKSF--------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-G 230 Q + + E L SGLR ++ ++ + N ++ Sbjct: 120 NQILDQALPEKEVEQQMWYRDKALLELLYSSGLRLAEVQGLRIKDIDFNRQLLRITGKGN 179 Query: 231 TIITVELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKA 280 V + + FI + Q K +A +A Sbjct: 180 KTRVVPFGSKAKDAVMKWLSIYPLWNGDFVPDAQVFITQKGNPLGMRQIENRVKFQAQRA 239 Query: 281 G--VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 G ++ H +R A+ + G + + YT D RL Sbjct: 240 GVNIDLHPHLLRHCFASHMLSNSGDLRAVQEMLGHSNLSTTQIYTH-VDFDRLA 292 >gi|120404256|ref|YP_954085.1| site-specific tyrosine recombinase XerD [Mycobacterium vanbaalenii PYR-1] gi|119957074|gb|ABM14079.1| tyrosine recombinase XerD subunit [Mycobacterium vanbaalenii PYR-1] Length = 317 Score = 126 bits (316), Expect = 6e-27, Method: Composition-based stats. Identities = 44/293 (15%), Positives = 89/293 (30%), Gaps = 36/293 (12%) Query: 67 KPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSG 122 P L Y +A N+ S+ + G D + + Sbjct: 6 DPAALDDQFQGYLDHLAIERGVAANTLSSYRRDLRRYAEHLASRGVTDLAGVAEADVSEF 65 Query: 123 VESRKH----------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 + S + + SA + + ++R L ++A + ++ V+ P + Sbjct: 66 LVSLRRGDPDNGVVPLSAVSAARAVIAVRGLHRFAAAEGITTVDVAREVKPPTPGRRLPK 125 Query: 173 PWTKEDMQQFKSF--------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 + +++ + R E L +G R S++ V + S+ Sbjct: 126 SLSIDEVLALLEAAGGDGEADGPLTLRNRALLELLYSTGARISEAVGLDVDDVDTEARSV 185 Query: 225 K-TQKTGTIITVELPDGFMKLLAMTPIGKETF-----------FINNDKQKMNATQFSIW 272 K G + + + L + F+N +++ Sbjct: 186 LLRGKGGKQRLIPIGRPAVSALDNYLVRGRPDLARRGRGTPAIFLNARGGRLSRQSAWQV 245 Query: 273 FKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + A +AG+ S H +R AT D GA + G +V + YT Sbjct: 246 LQDAAERAGITATVSPHVLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYT 298 >gi|304387940|ref|ZP_07370113.1| tyrosine recombinase XerD [Neisseria meningitidis ATCC 13091] gi|304338037|gb|EFM04174.1| tyrosine recombinase XerD [Neisseria meningitidis ATCC 13091] Length = 291 Score = 126 bits (316), Expect = 6e-27, Method: Composition-based stats. Identities = 43/273 (15%), Positives = 93/273 (34%), Gaps = 19/273 (6%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTP 130 LI ++ L+ N+ + ++I R+ + + + V Sbjct: 5 LIDRLLETLWLDRRLSQNTLNGYRRDLEKIARRLSQSGRTLKDADEADLAAAVYVDGEQR 64 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---- 186 SS + L++ + L+ W R+ NP ++ PK T++ + + + Sbjct: 65 SSQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLLATPDTDT 124 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-----------IKTQKTGTIITV 235 G + + E + +GLR S++ + + + V Sbjct: 125 PHGLRDKALLELMYATGLRVSEAVGLNFGSVDLGRGCITALGKGDKQRMVPMGQESAYWV 184 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294 E + L + + F++ K ++ + K A +AG+ + S H +R A Sbjct: 185 ERYYTEARPLLLKGRSCDALFVSQKKTGISRQLAWMIVKEYAGRAGIGHISPHSLRHAFA 244 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGAD 327 T G + G ++ + YT A+ Sbjct: 245 THLVQHGLDLRVVQDMLGHADLNTTQIYTHVAN 277 >gi|146299694|ref|YP_001194285.1| phage integrase family protein [Flavobacterium johnsoniae UW101] gi|146154112|gb|ABQ04966.1| phage integrase family protein [Flavobacterium johnsoniae UW101] Length = 297 Score = 126 bits (316), Expect = 6e-27, Method: Composition-based stats. Identities = 33/295 (11%), Positives = 97/295 (32%), Gaps = 32/295 (10%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSGVE--- 124 K +Y + + ++ ++ + ++ IRS + Sbjct: 5 KQAFQDYLQFE--KKYSPHTVNAYLNDLGFFEEFNKERFEQDSIERVNYSQIRSWIVFLV 62 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + + S + + S++ +K+ ++ + + ++P L + K P++++++ Sbjct: 63 DQGVSNVSVNRKMASLKAFYKFLLKIKQIEVSPMLKHKALKTPKIVQIPFSEKEVSDLMF 122 Query: 185 -----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIIT---- 234 E + +L + +G+R ++ ++++ ++ K Sbjct: 123 GVESPIGFEEVRDKLIVDLFYTTGMRRAELIGLMLKNVDLSSGVVKVLGKRSKERIVPLL 182 Query: 235 ---------VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285 + + + + + + +F + K V KS Sbjct: 183 PIVADQINLYIKEREQLDQIVDSEYFFISKKGLKLSESFVYRLINCYFSRVSEK--VKKS 240 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIKNSRR 338 H +R AT + GA + + G ++ + YT A+ ++ + R Sbjct: 241 PHVLRHTFATHLLNNGADLNSVKELLGHSSLASTQVYTHNSLAELKKVYSEAHPR 295 >gi|331665461|ref|ZP_08366360.1| tyrosine recombinase XerC [Escherichia coli TA143] gi|331057359|gb|EGI29348.1| tyrosine recombinase XerC [Escherichia coli TA143] Length = 298 Score = 126 bits (315), Expect = 6e-27, Method: Composition-based stats. Identities = 42/278 (15%), Positives = 90/278 (32%), Gaps = 21/278 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SRK 127 + Y + L+ + ++++ + II + + + + + Sbjct: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +S L+++R F W V Q + NP V PK + +DM + Sbjct: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSVPKAPRHLPKNIDVDDMNRLLDIDI 127 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243 + R E + +GLR S+ ++HL + K + + + Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187 Query: 244 LLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 + ++ F +D ++++A F K G+ + H +R A Sbjct: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 T ++ + G + + YT D L Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 284 >gi|294085315|ref|YP_003552075.1| phage integrase family protein [Candidatus Puniceispirillum marinum IMCC1322] gi|292664890|gb|ADE39991.1| phage integrase family protein [Candidatus Puniceispirillum marinum IMCC1322] Length = 396 Score = 126 bits (315), Expect = 6e-27, Method: Composition-based stats. Identities = 59/342 (17%), Positives = 104/342 (30%), Gaps = 30/342 (8%) Query: 12 TKERTRHGKIIYYFRKGHGR--RIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 + R K K GR R+ + T A AL + Sbjct: 38 VRVRDTGHKSYILMTKRKGRPLRMTIGAVQHMTCDAARQRAL---DHLATDCGASSDPAI 94 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH 128 TL L++ H +++ ++ + +Q+I G IT + I + Sbjct: 95 TLGALVAGRWHDEHLMRCKPSTQRTYRNMLQNQLIPNFGTMQLDAITREAIADWFDRFSQ 154 Query: 129 T-PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI--------RPWTKEDM 179 T P +A + L + + +AVR +A N + + K K R + D Sbjct: 155 TAPGNANRGLILLNQILNFAVRHGLLARNVAAGLTKNKGKKLTRFLSGEELARLYHVMDE 214 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239 +E Q R L+ +G R + R + + +K KTG V L Sbjct: 215 HVADCPRTERKQGRDIVRLLILTGCRKGEILRLRWDEIDGDRLRLKDSKTG-PREVHLSL 273 Query: 240 GFMKLLAMT-------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KS 285 +L F + T ++ A +AG++ Sbjct: 274 SARAILDRHKRATRSHAGGHGSQYRDGYVFPSKICPDQPITSIESFWYAVRQRAGLDDVR 333 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 H +R A+ + +G + G + Y D Sbjct: 334 LHDLRHTFASHAVMSGVPLPVVARLLGHSKISMTMRYAHVGD 375 >gi|78224235|ref|YP_385982.1| tyrosine recombinase XerD subunit [Geobacter metallireducens GS-15] gi|78195490|gb|ABB33257.1| tyrosine recombinase XerD subunit [Geobacter metallireducens GS-15] Length = 294 Score = 126 bits (315), Expect = 6e-27, Method: Composition-based stats. Identities = 48/295 (16%), Positives = 95/295 (32%), Gaps = 30/295 (10%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGVE--SR 126 I+ + + +++ ++ ++ S Q + ++ IR + R Sbjct: 5 IAAFIRHLETERNVSPHTLAAYRSDLAQFREFVRQETGAAAEPEGVSHLLIRRWLALLHR 64 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQF 182 HT SS + L ++R FK +R + NP V PK++ + + ++ ++ Sbjct: 65 DHTKSSVGRKLAAVRAFFKHLIRTGRLVKNPAELVSTPKKEKKVPYHLSIDEATALVETP 124 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241 K + R E L G+R S+ + + + + + K G V + Sbjct: 125 KEPDILSLRDRAILETLYSCGVRVSELTGLNIGGIDLDDGTARVLGKGGKERIVPVGSIA 184 Query: 242 MKLLAMTPIGKETF------FINNDKQKMNATQFSIWFKA--KATKAGVNKSAHGVRKFS 293 L+ + F N ++ A S H +R Sbjct: 185 RAALSHYLTARNHPPLDAPLFTNARGGRLTPRSVRRVVDKHILRIAAMRKISPHTLRHTF 244 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 AT + GA + G ++ + YT R+ V D P Sbjct: 245 ATHLLEGGADLRAIQELLGHASLSTTQKYTHV---------GIDRLMEVYDKAHP 290 >gi|315302916|ref|ZP_07873649.1| tyrosine recombinase XerC [Listeria ivanovii FSL F6-596] gi|313628712|gb|EFR97112.1| tyrosine recombinase XerC [Listeria ivanovii FSL F6-596] Length = 300 Score = 126 bits (315), Expect = 6e-27, Method: Composition-based stats. Identities = 37/284 (13%), Positives = 94/284 (33%), Gaps = 27/284 (9%) Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHIR 120 + + + +Y S + + N+ ++E+ R + + + + Sbjct: 3 QEGKWEQMFLDYLHSE--RNYSENTSTAYENDLLDFRRFLNEQAITQYKQVTFLDVRIYL 60 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + ++ + + ++ + ++S+R + + +R+ + NP V K + + + E+M+ Sbjct: 61 TELKQKSFSRTTVARKISSLRSFYTFLLRENVITENPFTYVSHAKNQLRLPKFFYSEEME 120 Query: 181 QFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIIT 234 E + + R+ E L +G+R S+ + + +I K Sbjct: 121 ALFQVVYEDNETLTIRDRVLLEVLYGTGIRVSECAGILLTDIDQTYQAILIRGKGNKERY 180 Query: 235 VELPDGFMKLLAMTPIG-----------KETFFINNDKQKMNATQFSIWFKAKATKAGV- 282 V + ++ IN+ + +KA + Sbjct: 181 VPFGVYAEDAITDYLDCRLALMKRFNKTHDSLLINHYGDPLTTRGIRYCLTKIISKASLT 240 Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 H +R AT + GA + G ++ + YT Sbjct: 241 RKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHV 284 >gi|313676501|ref|YP_004054497.1| integrase family protein [Marivirga tractuosa DSM 4126] gi|312943199|gb|ADR22389.1| integrase family protein [Marivirga tractuosa DSM 4126] Length = 293 Score = 126 bits (315), Expect = 6e-27, Method: Composition-based stats. Identities = 52/298 (17%), Positives = 104/298 (34%), Gaps = 34/298 (11%) Query: 76 SEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRKH-- 128 + K + + ++ +S+++ DQ + D D K +HIRS V + Sbjct: 3 DTFFKYLQFEKRYSSHTLVSYQNDLDQFSKYLEDQFQTCDLLKAEHRHIRSWVVNLMQDG 62 Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185 P S + + ++R +K+A+ +E + NP ++ K E + +++M S Sbjct: 63 VKPRSINRKIIALRSFYKFAISREAIHQNPTQKIKALKSAKELPQFVQEKEMDNLLSHIV 122 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241 EG++ L E L +G+R ++ +I+ K V Sbjct: 123 FPEDFEGNRDALIMELLYGTGMRLAELIGLKEDDFNRQAGTIRILGKGNKERVVPFHLEI 182 Query: 242 MKLLAMTPIGKETFFINNDKQK---------MNATQFSIWFKAKATKAGV--NKSAHGVR 290 + L K+ F +N + + K + +S H +R Sbjct: 183 GRRLDKYIFHKKELFSHNGQSPLIVSNNGSKAYPMLINRITKKYLDQVTTISKRSPHVLR 242 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 AT + GA + + G ++ + YT + ++ V D P Sbjct: 243 HTFATHLLNKGADLNAVKDMLGHSSLAATQVYTH---------NSLDKLKKVFDQAHP 291 >gi|261337541|ref|ZP_05965425.1| tyrosine recombinase XerD [Bifidobacterium gallicum DSM 20093] gi|270277948|gb|EFA23802.1| tyrosine recombinase XerD [Bifidobacterium gallicum DSM 20093] Length = 306 Score = 126 bits (315), Expect = 6e-27, Method: Composition-based stats. Identities = 36/287 (12%), Positives = 91/287 (31%), Gaps = 32/287 (11%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVE 124 ++ S L+ + ++ + +Q + + T + ++ Sbjct: 4 ADWARKFLTSMDVERGLSRATLDAYRTDLEQYLTFLDARGLNEPTRIRTEDVEQFVQHLD 63 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 ++ P+S + L +R+ ++ +++ VA++ ++ PK + +D+ Q Sbjct: 64 AQGLQPASIARRLACVRMFHRFLLQERAVAVDVTATMHAPKTGEHLPDVLSVDDVFQLLD 123 Query: 185 FWS--------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITV 235 ++ E L +G R S++ + + ++ T K V Sbjct: 124 TAQQMASTGDVVATRDWALLEMLYATGARVSEAVGLNLDDIDETDRVMRLTGKGSKQRLV 183 Query: 236 ELPDGFMKLLAMTPIGKETF--------------FINNDKQKMNATQFSIWFKAKATKAG 281 + L ++N ++++ + A +A Sbjct: 184 PFGSTAAQALQQYLDASRPVLEAKAKGERELRAVWLNKRGKRLSRQSAWEVLQTAAGRAK 243 Query: 282 V--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 + H +R AT GA + G +V + YT + Sbjct: 244 LTRPIHPHTLRHSFATHLIQGGADVRSVQELLGHASVQTTQIYTHVS 290 >gi|70733299|ref|YP_263073.1| site-specific tyrosine recombinase XerC [Pseudomonas fluorescens Pf-5] gi|123748313|sp|Q4K3W0|XERC_PSEF5 RecName: Full=Tyrosine recombinase xerC gi|68347598|gb|AAY95204.1| tyrosine recombinase XerC [Pseudomonas fluorescens Pf-5] Length = 298 Score = 126 bits (315), Expect = 6e-27, Method: Composition-based stats. Identities = 35/279 (12%), Positives = 83/279 (29%), Gaps = 21/279 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR------SGVESRK 127 + Y ++ ++ ++ ++++ R T I+ + + + Sbjct: 5 LDAYCAHLRSERQVSPHTLQAYRRDLEKVLGFCEKMQVRSWTDLDIQGLRSLIARLHQQG 64 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + S + L+++R L+ + R+ +P + PK + + + Q Sbjct: 65 QSSRSLARLLSAVRGLYHYLNREGLCTHDPANGLAPPKGERRLPKTLDTDRTLQLLDGAV 124 Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFM 242 E + + E GLR S+ + L K + + Sbjct: 125 EDDFLAHRDQAILELFYSCGLRLSELTSLNLDQLDLADGLVQVHGKGSKTRVLPVGKKAR 184 Query: 243 KLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSA 294 L F++ +++ + KA + G N H +R A Sbjct: 185 SALEQWLPLRALSNPPDGALFVSQKGRRLGPRAIQLRVKAAGERELGQNLHPHMLRHSFA 244 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 + ++ + G + + YT D L Sbjct: 245 SHLLESSQDLRAVQELLGHSDIKTTQIYTH-LDFQHLAA 282 >gi|91227527|ref|ZP_01261864.1| tyrosine recombinase [Vibrio alginolyticus 12G01] gi|91188551|gb|EAS74843.1| tyrosine recombinase [Vibrio alginolyticus 12G01] Length = 310 Score = 126 bits (315), Expect = 6e-27, Method: Composition-based stats. Identities = 39/286 (13%), Positives = 98/286 (34%), Gaps = 22/286 (7%) Query: 68 PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRS-- 121 P +L+ + + + L+++++ +++ + + + G D+ ++ +R Sbjct: 10 PNSLQKPLERFYEFLRSEKGLSLHTQRNYKQQLETMAQHLAEMGLKDWSQVDAGWVRQLA 69 Query: 122 -GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 SS L+S+R F + + + ++ NP V P++K + +++ Sbjct: 70 GKGMREGMKASSLATRLSSLRSFFDFLILRGEMSANPAKGVSAPRKKRPLPKNLDVDEVS 129 Query: 181 QFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236 Q + + R E + +GLR ++ V+ +Q ++ V Sbjct: 130 QLLEVNEDDPLAVRDRAMMELMYGAGLRLAELVGVDVRDVQLRSGELRVIGKGDKERKVP 189 Query: 237 LPDGFMKLLAMTPIGK--------ETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 + + + F++ +++ K V + S Sbjct: 190 FSGMATEWVGKWLRVRGDLAAPGEPALFVSKLGTRISHRSVQKRMAEWGQKQSVASHISP 249 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R AT ++ + G + + + YT D L Sbjct: 250 HKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTH-LDFQHLA 294 >gi|161617068|ref|YP_001591033.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168238402|ref|ZP_02663460.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168244638|ref|ZP_02669570.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168263161|ref|ZP_02685134.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|194447983|ref|YP_002047961.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194736121|ref|YP_002116878.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|161366432|gb|ABX70200.1| hypothetical protein SPAB_04901 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194406287|gb|ACF66506.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194711623|gb|ACF90844.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288766|gb|EDY28141.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|205336497|gb|EDZ23261.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205348233|gb|EDZ34864.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 300 Score = 126 bits (315), Expect = 6e-27, Method: Composition-based stats. Identities = 45/278 (16%), Positives = 95/278 (34%), Gaps = 21/278 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSG---VESRK 127 +S + + L+ + +++ D II +G+ +++ +RS + Sbjct: 10 VSRFLRYLGVERQLSPITLQNYQRQLDAIIALAGETGLKSWQQCDAAIVRSFAVRSRRKG 69 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 P+S L+++R F W V Q + NP V PK + +D+ + Sbjct: 70 LGPASLALRLSALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKNIDVDDVNRLLDIDL 129 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243 + R E + +GLR S+ ++HL + K + + + Sbjct: 130 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLPIGRNAVT 189 Query: 244 LLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 + + F + + ++++A F K G+ + H +R A Sbjct: 190 WIEHWLDLRGLFASDEEALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFA 249 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 T ++ + G + + YT D L Sbjct: 250 THMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 286 >gi|309796245|ref|ZP_07690655.1| tyrosine recombinase XerC [Escherichia coli MS 145-7] gi|308120127|gb|EFO57389.1| tyrosine recombinase XerC [Escherichia coli MS 145-7] Length = 298 Score = 126 bits (315), Expect = 6e-27, Method: Composition-based stats. Identities = 42/278 (15%), Positives = 89/278 (32%), Gaps = 21/278 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SRK 127 + Y + L+ + ++++ + II + + + + + Sbjct: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +S L+++R F W V Q + NP V PK + +DM + Sbjct: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI 127 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243 + R E + +GLR S+ + HL + K + + + Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDINHLDLESGEVWVMGKGSKERRLPIGRNAVA 187 Query: 244 LLAMTPIGKETFFINND-------KQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 + ++ F +D ++++A F K G+ + H +R A Sbjct: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 T ++ + G + + YT D L Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 284 >gi|256841123|ref|ZP_05546630.1| tyrosine recombinase XerC [Parabacteroides sp. D13] gi|256736966|gb|EEU50293.1| tyrosine recombinase XerC [Parabacteroides sp. D13] Length = 302 Score = 126 bits (315), Expect = 6e-27, Method: Composition-based stats. Identities = 50/277 (18%), Positives = 97/277 (35%), Gaps = 25/277 (9%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGV---E 124 LI ++ + + + + ++ DQ R G FD +I + +RS + Sbjct: 2 LIDDFLNYLRYERNYSNYTIGAYSKDLDQFQRYVREHREGVFDPGEIDSDFVRSWIVCLM 61 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-----WTKEDM 179 K +P S + L+S++ FK+ +++ V+ NP V PK K Sbjct: 62 DEKFSPVSVNRKLSSLKSFFKFLMKRGIVSANPLRLVSGPKTKKPLPCFIKDSELEALLD 121 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239 EG + RL E L +G+R S+ + +K + Sbjct: 122 GDGFDEDFEGVRNRLVIEMLYDTGMRRSELIGIRNVDVDYEAMQVKVTGKRNKQRLIPFA 181 Query: 240 GFMKLLAMTPIGKE---------TFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHG 288 +K L + FF+ + +++ K + ++ + +S H Sbjct: 182 EGLKNLMLAYTEVRDREVEAAGEWFFVRKNGNQLSTGIVYNIVKKQLSEIPMLAKRSPHV 241 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 +R AT + GA + + G ++ YT Sbjct: 242 LRHSFATSMLNNGAELNAVKDLLGHSSLASTSVYTHT 278 >gi|149198674|ref|ZP_01875717.1| integrase/recombinase XerD [Lentisphaera araneosa HTCC2155] gi|149138110|gb|EDM26520.1| integrase/recombinase XerD [Lentisphaera araneosa HTCC2155] Length = 394 Score = 126 bits (315), Expect = 6e-27, Method: Composition-based stats. Identities = 49/336 (14%), Positives = 103/336 (30%), Gaps = 30/336 (8%) Query: 17 RHGKIIY-YFRKGHGRRI-RLPYPHESTFIPAYMSALT-----GSTPKREYINSPR---- 65 + G I Y F +++ L P+++ L+ E+I + Sbjct: 12 KRGNIYYLRFTVNGKKKVVSLKTPNKAIATKEAEKYLSPQKASNEAEAAEFIAKAKGLIS 71 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIR 120 + +L Y KS ++ S++ + + +R ++T K Sbjct: 72 TERISLDDAWDLYFKSKRRRDSGKSTITSYKQHLQKFVRFVEAEYDELIYLDELTPKVAE 131 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 +ES K +P++ ++ +++ F + V NP + K E R +++ Sbjct: 132 EFLESLKVSPNTYNKYKNFLKLYFDTVSKDCGVTKNPFEGIISKSLKKESWRELNDDEVD 191 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-----TIITV 235 + + + +Y+G+R D+ + I ++ V Sbjct: 192 KL--TSYPKGEVWVLMNLGIYTGMRLKDAALLKWADVDLKREKIIFTPWKTAKSEKVVHV 249 Query: 236 ELPDGFMKLLAMTPIGKETF----FINNDKQKMNATQFSIWFKAKATKAGV---NKSAHG 288 + K L K + + + T S K + H Sbjct: 250 PILPELRKALQWVKQQKLSNDLVLPEMAASYQKSRTNLSSLVKRIFIDLKIRDGKVGFHS 309 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R + A AG + A G + YT Sbjct: 310 LRHTFVSTCAKAGVPMSVVQAIVGHGSPAMTRHYTH 345 >gi|260905256|ref|ZP_05913578.1| tyrosine recombinase XerD [Brevibacterium linens BL2] Length = 315 Score = 126 bits (315), Expect = 6e-27, Method: Composition-based stats. Identities = 44/289 (15%), Positives = 86/289 (29%), Gaps = 28/289 (9%) Query: 68 PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGV 123 P +L Y S + L+ NS ++ + G ++ H+ + Sbjct: 13 PASLARAFETYLNSLRFERGLSRNSIDAYARDLARYGTWLNGQGMSHLGEVERTHVEAFA 72 Query: 124 ESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 P + + L ++R +A+ + A +P V P+ + + +D++ Sbjct: 73 LHLLDENLAPRTRARALVAVRRFHGFALGEGLAATDPASEVSPPQEGLRLPKALSLDDIE 132 Query: 181 QFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITV 235 + + E L +G R S++ + L ++ K G V Sbjct: 133 AMLATTGGEEPAQIRAAALLELLYATGARISEAVGVDLDDLDLETSLVRLYGKGGKERIV 192 Query: 236 ELPDGFMKLLAMTPIGKETFFI--------------NNDKQKMNATQFSIWFKAKATKAG 281 L N +++ K AG Sbjct: 193 PFGSHAATALGAWVSRTRPSMAAKARSSAPAGALFLNARGTRLSRQTAWQIVKDAGELAG 252 Query: 282 VN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 + S H R AT + GA + G +V + YTK ++ Sbjct: 253 LEAEVSPHTFRHSFATHLLEGGADIRVVQELLGHASVTTTQIYTKVSEE 301 >gi|15603566|ref|NP_246640.1| site-specific tyrosine recombinase XerC [Pasteurella multocida subsp. multocida str. Pm70] gi|34223005|sp|Q9CKC2|XERC_PASMU RecName: Full=Tyrosine recombinase xerC gi|12722110|gb|AAK03785.1| XerC [Pasteurella multocida subsp. multocida str. Pm70] Length = 295 Score = 126 bits (315), Expect = 6e-27, Method: Composition-based stats. Identities = 39/270 (14%), Positives = 89/270 (32%), Gaps = 20/270 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIR---SGVESRK 127 + +Y ++ ++ +++ +I+ G ++ +T +R + Sbjct: 5 LDKYWNYLRIERQVSPHTLTNYQRQLYRIVDILAENGITSWQAVTPSIVRFILAQSNKDG 64 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 S L+ +R F + V+Q+ + +NP V PK+ + E +QQ + Sbjct: 65 LKERSLALRLSVLRRFFTYLVQQQDINVNPATGVSAPKQNRHLPKNIDAEQVQQLLNNDS 124 Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243 + R E L SGLR S+ + + + ++ V Sbjct: 125 KEPIDIRDRAILELLYSSGLRLSELQSLNLNSINTRVREVRVMGKGNKERIVPFGRYASH 184 Query: 244 LLAMTPIGKETFFINND-------KQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 + + F ++ ++ + K G+ + + H +R A Sbjct: 185 AIQQWLKVRILFNPKDEALFVSQLGNRLTHRAIQQRLEVWGIKQGLSSHLNPHKLRHSFA 244 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324 T +A + + G + + YT Sbjct: 245 THMLEASSDLRAVQELLGHSNLSTTQIYTH 274 >gi|225351382|ref|ZP_03742405.1| hypothetical protein BIFPSEUDO_02976 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157726|gb|EEG71009.1| hypothetical protein BIFPSEUDO_02976 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 308 Score = 126 bits (315), Expect = 6e-27, Method: Composition-based stats. Identities = 44/288 (15%), Positives = 89/288 (30%), Gaps = 36/288 (12%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVES--RK 127 Y K+ L+ N+R ++ ++ + + D ++T + +R + + Sbjct: 8 EAFDTYLKAN--RGLSENTRKAYRGDVEECLLALERLRCRDLNEVTIEDLRMWMAESSKN 65 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 H SS + ++R F W +P ++ PK ++ +Q Sbjct: 66 HAKSSMARKTVAVRGFFAWTHEHGVTTTDPACALMTPKIPDTLPDVLSESQAEQLMERVD 125 Query: 188 EG-----------------SQPRLAFEFLLYSGLRCSDSCRAG-VQHLQNNIFSIKTQKT 229 E + E L +G+R ++ + +N T K Sbjct: 126 EDGETSQPKERTMKQQAIELRDAAMLELLYATGMRVAELVGLDVPDVVFSNRTVKVTGKG 185 Query: 230 GTIITVELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATK 279 + K + F+ ++++ A Sbjct: 186 NKQRVMPFGAPAQKAIRRWLDDGRPLLVGEQSAAALFLGRQGKRIDQRMVRRVVHECARD 245 Query: 280 AGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 AGV S H +R +AT D GA E+ G ++ + YT + Sbjct: 246 AGVPDISPHALRHSAATHMLDGGADLREVQELLGHSSLKTTQRYTHVS 293 >gi|168467636|ref|ZP_02701473.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195629975|gb|EDX48635.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 300 Score = 126 bits (315), Expect = 6e-27, Method: Composition-based stats. Identities = 44/278 (15%), Positives = 94/278 (33%), Gaps = 21/278 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSG---VESRK 127 +S + + L+ + +++ D II +G+ +++ +RS + Sbjct: 10 VSRFLRYLGVERQLSPITLQNYQRQLDAIIALAGETGLKSWQQCDAAIVRSFAVRSRRKG 69 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 P+S L+++R F W V Q + NP V PK + +D+ + Sbjct: 70 LGPASLALRLSALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKNIDVDDVNRLLDIDL 129 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243 + R E + +GLR S+ ++HL + K + + + Sbjct: 130 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLPIGRNAVT 189 Query: 244 LLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 + + F + + ++++ F K G+ + H +R A Sbjct: 190 WIEHWLDLRGLFASDEEALFLSKLGKRISVRNVQKRFAEWGIKQGLNSHVHPHKLRHSFA 249 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 T ++ + G + + YT D L Sbjct: 250 THMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 286 >gi|152991432|ref|YP_001357154.1| phage integrase family site specific recombinase [Nitratiruptor sp. SB155-2] gi|151423293|dbj|BAF70797.1| site-specific recombinase, phage integrase family [Nitratiruptor sp. SB155-2] Length = 365 Score = 126 bits (315), Expect = 6e-27, Method: Composition-based stats. Identities = 53/362 (14%), Positives = 111/362 (30%), Gaps = 31/362 (8%) Query: 1 MTP-SLRLPPFVTKERTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPA-----YMSALT 52 M R P V + +G I Y F G++ + +S I + Sbjct: 1 MARVKSRKYPGVYLNKLANGDISYSFTYKDENGKKKWVTVGKKSAGITEVYTYNKRNEYI 60 Query: 53 GSTPKREYINSPRKKPTT--LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110 E +K + L Y K + +++ + Y + I G Sbjct: 61 NKVKLGEDPLRAKKLRKSKVLDEAFELYVKDRELHNKSLHDEKA--RYINHIQPTFGSTP 118 Query: 111 YRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKR 166 IT + I+ + + ++ + + + + + + Y NP V+R K Sbjct: 119 IAAITPEAIQKLQKKKINEGYSYKTVNHIINLLSTIINVGIEKGLYQGSNPAKKVKRLKV 178 Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSI 224 R + ++++ + L L +G R + + + + Sbjct: 179 DNARERFLSVDEVKLLLDTVKDNPTLYLFCNLSLSTGGRLETILAIQKKDIDLESGTIKL 238 Query: 225 KTQKTGTIITVELPDGFMKLLAM--TPIGKETFFINNDKQKMNATQFSIWFKAKATKA-- 280 K K + T + D LL + + ++ + + + Q + K + Sbjct: 239 KDFKNDSTYTGFINDTLHSLLKDLLPQLKANDYILSKSSKPLTSRQIQVPLKPILDRLFN 298 Query: 281 -GV-------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRL 331 G+ H +R A+ A G + + K ++ Y K A D R Sbjct: 299 QGLQPNDRKNRVVIHTLRHTFASHLAINGTPIYTIQRLMNHKDINMTLRYAKLAPDSGRE 358 Query: 332 GI 333 + Sbjct: 359 AV 360 >gi|73667280|ref|YP_303296.1| Phage integrase, N-terminal SAM- like [Ehrlichia canis str. Jake] gi|72394421|gb|AAZ68698.1| Phage integrase, N-terminal SAM- like protein [Ehrlichia canis str. Jake] Length = 310 Score = 126 bits (315), Expect = 6e-27, Method: Composition-based stats. Identities = 35/276 (12%), Positives = 77/276 (27%), Gaps = 32/276 (11%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP----SSA 133 + + +VN+ ++ ++ + + R +T + + + + A Sbjct: 16 WLE--KERRYSVNTVDAYVRDVNKFLGFLYTYVLRPVTLEDVVNIKVADLRKWFTFRYQA 73 Query: 134 I-------QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED-----MQQ 181 + L++++ F++ R V + RPK K+ + + Sbjct: 74 NVEAITNARSLSALKNFFRYLSRTYDVDNQSIFCLSRPKLKSALPKTLGQFHIENIVNYY 133 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 + L GLR S++ Q ++ I + + + Sbjct: 134 SLHDNWVFKRDFAIIMLLYGCGLRISEAVGLKFQDVRTGEILITGKGN-KERILPILPVV 192 Query: 242 MKLLAMTPIGKETFFINNDKQKMN-----------ATQFSIWFKAKATKAGVNKS--AHG 288 L N T F+ + K G+ + H Sbjct: 193 RNSLDEYIKFCPYHTKLNSVGNEYIFVGVNGKKLGRTYFANRIQKICEKIGLPDTTTPHV 252 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT +GA + G + + YT Sbjct: 253 FRHSFATHLLLSGADIRSIQELLGHANLSTTQIYTH 288 >gi|28198560|ref|NP_778874.1| site-specific tyrosine recombinase XerD [Xylella fastidiosa Temecula1] gi|182681239|ref|YP_001829399.1| site-specific tyrosine recombinase XerD [Xylella fastidiosa M23] gi|73920482|sp|Q87DN0|XERD_XYLFT RecName: Full=Tyrosine recombinase xerD gi|28056644|gb|AAO28523.1| integrase/recombinase [Xylella fastidiosa Temecula1] gi|182631349|gb|ACB92125.1| tyrosine recombinase XerD [Xylella fastidiosa M23] gi|307579687|gb|ADN63656.1| site-specific tyrosine recombinase XerD [Xylella fastidiosa subsp. fastidiosa GB514] Length = 324 Score = 126 bits (315), Expect = 6e-27, Method: Composition-based stats. Identities = 53/294 (18%), Positives = 100/294 (34%), Gaps = 35/294 (11%) Query: 66 KKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSG 122 + TT+ + + K L+ ++ S+ + + R + +T + Sbjct: 22 EDATTIAHCLDALWIKH----GLSRHTLNSYRRDLEGLARWNNGRAGPLATLTPPALLDY 77 Query: 123 VESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + R ++P S + + +R F +AV + NP + P + T+ + Sbjct: 78 LTWRTQQHYSPLSNARLRSVLRTFFSYAVECGWRNDNPSTLLAHPVLPHPLPKALTESQI 137 Query: 180 QQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIIT 234 + + EG + R E + +GLR S+ V L ++ G Sbjct: 138 EALLAAPSIETPEGLRNRAMLELMYAAGLRVSELVTLPVAMLNQRQGVLRITGKGGKERL 197 Query: 235 VELPDGFMKLLAMTPIGKETF-----------------FINNDKQKMNATQFSIWFKAKA 277 V L + L FIN + ++++ QF W K A Sbjct: 198 VPLGEESQHWLQRYLEQARPSLAADKPIPADSDGDVPLFINTNLKRLSRQQFWRWIKHYA 257 Query: 278 TKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 G+ S H +R AT + GA L G +++ + YT A + Sbjct: 258 ALVGIAPNKVSPHVLRHSFATHLLNHGADLRALQMLLGHRSISTTQIYTLIARQ 311 >gi|16762185|ref|NP_457802.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143674|ref|NP_807016.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213162145|ref|ZP_03347855.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213425411|ref|ZP_03358161.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213649576|ref|ZP_03379629.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213854889|ref|ZP_03383129.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289829107|ref|ZP_06546781.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|34222945|sp|Q8Z3A8|XERC_SALTI RecName: Full=Tyrosine recombinase xerC gi|25299264|pir||AI0918 integrase/recombinase [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504489|emb|CAD09371.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Typhi] gi|29139309|gb|AAO70876.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 300 Score = 126 bits (315), Expect = 6e-27, Method: Composition-based stats. Identities = 45/278 (16%), Positives = 95/278 (34%), Gaps = 21/278 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSG---VESRK 127 +S + + L+ + +++ D II +G+ +++ +RS + Sbjct: 10 VSRFLRYLGVERQLSPITLQNYQRQLDAIIALAGETGLKSWQQCDAAIVRSFAVRSRRKG 69 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 P+S L+++R F W V Q + NP V PK + +D+ + Sbjct: 70 LGPASLALRLSALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKNIDVDDVNRLLDIDL 129 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243 + R E + +GLR S+ ++HL + K + + + Sbjct: 130 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLPIGRNAVT 189 Query: 244 LLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 + + F + + ++++A F K G+ + H +R A Sbjct: 190 WIEHWLDLRGLFASDEEALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFA 249 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 T ++ + G + + YT D L Sbjct: 250 THMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 286 >gi|323964056|gb|EGB59546.1| tyrosine recombinase XerC [Escherichia coli M863] gi|327250661|gb|EGE62367.1| tyrosine recombinase XerC [Escherichia coli STEC_7v] Length = 298 Score = 126 bits (315), Expect = 7e-27, Method: Composition-based stats. Identities = 41/278 (14%), Positives = 93/278 (33%), Gaps = 21/278 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSG---VESRK 127 + Y + L+ + ++++ + ++G +++ +R+ + Sbjct: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDAAMVRNFAVRSRRKG 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +S L+++R F W V Q + NP V PK + +D+ + Sbjct: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDINRLLDIDI 127 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243 + R E + +GLR S+ ++HL + K + + + Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187 Query: 244 LLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 + ++ F +D ++++A F K G+ + H +R A Sbjct: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 T ++ + G + + YT D L Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 284 >gi|323500158|ref|ZP_08105103.1| site-specific tyrosine recombinase XerC [Vibrio sinaloensis DSM 21326] gi|323314787|gb|EGA67853.1| site-specific tyrosine recombinase XerC [Vibrio sinaloensis DSM 21326] Length = 310 Score = 126 bits (315), Expect = 7e-27, Method: Composition-based stats. Identities = 37/279 (13%), Positives = 95/279 (34%), Gaps = 22/279 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRS---GVESRK 127 + + + L+++++ +++ + + + G D+ ++ + +R Sbjct: 16 LDRFYEYLRSEKGLSLHTQRNYKQQLETMAQHLVQLGLKDWSQVDSAWVRQLASKGMRDG 75 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 SS L+S+R F + + + ++ NP V P++K + +++ Q Sbjct: 76 MKASSLATRLSSLRSFFDFLILRGEMSANPAKGVSAPRKKRPLPKNLDVDEVGQLLEVNE 135 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243 + + R E + +GLR ++ V+ + I+ V + Sbjct: 136 DDPLSVRDRAMMEMMYGAGLRLAELVSINVRDVSFTSGEIRVVGKGDKERKVPFSGMAAE 195 Query: 244 LLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293 + ++ F++ +++ K V + S H +R Sbjct: 196 WVNKWLKVRASLANSDEQALFVSKLGVRISHRNVQKRMAEWGQKQAVASHISPHKLRHSF 255 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 AT ++ + G + + + YT D L Sbjct: 256 ATHVLESSNNLRAVQELLGHENISTTQIYTH-LDFQHLA 293 >gi|317477593|ref|ZP_07936813.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] gi|316906241|gb|EFV27975.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] Length = 348 Score = 126 bits (315), Expect = 7e-27, Method: Composition-based stats. Identities = 49/318 (15%), Positives = 95/318 (29%), Gaps = 30/318 (9%) Query: 28 GHGRRIRLPYPHESTFIPAYMS-------ALTGSTPKREYINSPRKKPTTLKWLISEYRK 80 G + + F Y+ A+ + P++E P Y + Sbjct: 23 GGRAYLPAEDFVLAEFFDRYVKMAFIDYSAIKETAPRKEEDKRPPLPEG--------YLE 74 Query: 81 SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQF 136 + ++ + SYF + +T I + + + Q Sbjct: 75 KLQQVRYSDHTVRVYTSYFRDFQQHFEGRKIETVTPGEINDYLLYLIHEKNISSCQQNQR 134 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196 + +++ + + C V R KR+ +KE++++ + F Sbjct: 135 INAIK----FYYEKVLGQERRCYKVNRAKREKTLPDVLSKEEIKKILDVTVTDLRFFCMF 190 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254 L +GLR S+ + + ++ K L MK L + Sbjct: 191 SILYSAGLRISELLELKPGDINESRSLIRVRQGKGKKDRYTLLSRPLMKKLTEYNRLYKP 250 Query: 255 FFINNDKQK---MNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMA 309 + + + S KA A +AG+ K H +R AT + G + Sbjct: 251 KVWLFEHRPGEPFTESIVSKRLKAAAREAGITKRIYPHLLRHSFATHLLEQGTDIKIVKE 310 Query: 310 TYGWKTVDQAETYTKGAD 327 G + E Y AD Sbjct: 311 LMGHNNIKTTERYVHIAD 328 >gi|254294584|ref|YP_003060607.1| integrase family protein [Hirschia baltica ATCC 49814] gi|254043115|gb|ACT59910.1| integrase family protein [Hirschia baltica ATCC 49814] Length = 318 Score = 126 bits (315), Expect = 7e-27, Method: Composition-based stats. Identities = 46/302 (15%), Positives = 94/302 (31%), Gaps = 30/302 (9%) Query: 66 KKPTTLKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDF--------DYRKITT 116 P T + + + H ++ ++ + + + D +T Sbjct: 14 HAPNTASQALYAFVEHLTHERRMSEHTIDGYRRDVGNFLGFLVNHLGGEAHVNDLVNLTP 73 Query: 117 KHIRSGVESRKH----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 +R+ + R+ +S + L+++R FK+ RQ V+ PKR R Sbjct: 74 SDVRAWLAFRRANDDLQATSISRALSAVRAFFKYLDRQLDKPNARIQMVKAPKRPQRLPR 133 Query: 173 PWTKEDMQQFKSF-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225 P ++E + ++ + +GLR S++ + Sbjct: 134 PVSQEIAKNLLKEVENQDVEPWIAARDAAMVALMYGAGLRISEALSLTDADVPARDILRI 193 Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKAT 278 K + V L L + + F +K+N + Sbjct: 194 QGKGNKVRLVPLIPAVRDALNVYYEKRPFLSDEEGPLFRGVKGKKLNPRIIQKLIEKLRI 253 Query: 279 KAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKN 335 G+ + H +R AT GA + G ++ + YT ADR++ K Sbjct: 254 SMGLPDTATPHALRHSFATHLLANGADLRSIQTLLGHASLSSTQIYTGVEADRLKAIHKA 313 Query: 336 SR 337 + Sbjct: 314 AH 315 >gi|253566424|ref|ZP_04843877.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5] gi|251944596|gb|EES85071.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5] gi|301165207|emb|CBW24778.1| putative tyrosine recombinase [Bacteroides fragilis 638R] Length = 317 Score = 126 bits (315), Expect = 7e-27, Method: Composition-based stats. Identities = 49/296 (16%), Positives = 104/296 (35%), Gaps = 24/296 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGVESRK 127 +I +Y++ SL+ N+ ++ + ++++ + + +G+ Sbjct: 16 IIKKYQQYLKLEKSLSKNTLEAYLTDLEKLLSFLSAEGVEILEVSLTDLQRFAAGLHDIG 75 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 S + ++ ++ F + + +Y+ +P +E PK + T E++ + S Sbjct: 76 IHARSQARIISGIKSFFHFLIIADYIEADPSELLEGPKIGFKLPEVLTVEEIDRIISTID 135 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-----------KTQKTGTI 232 +EG + R E L GLR S+ + L + I I Sbjct: 136 LSKNEGQRNRAILETLYSCGLRVSELTGLKLSDLYFDEGFIKVEGKGSKQRLVPISPKAI 195 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290 ++L + + ++ F++ ++ K A AG+ N S H R Sbjct: 196 QEIKLYFLDRNRINIKKDHEDYLFLSRRGTHLSRIMIFHLIKELADMAGITQNISPHTFR 255 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346 AT + GA + G +++ E YT DR L + + Sbjct: 256 HSFATHLLEGGANLRAIQCMLGHESISTTEIYTH-IDRNMLRSEIIEHHPRNIKYR 310 >gi|158320625|ref|YP_001513132.1| tyrosine recombinase XerD [Alkaliphilus oremlandii OhILAs] gi|158140824|gb|ABW19136.1| tyrosine recombinase XerD [Alkaliphilus oremlandii OhILAs] Length = 294 Score = 126 bits (315), Expect = 7e-27, Method: Composition-based stats. Identities = 37/268 (13%), Positives = 93/268 (34%), Gaps = 24/268 (8%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI------TTKHIRSGVESRKHTPS 131 Y L+ N+ ++ Q + + + T ++ + + Sbjct: 11 YLD--QEKKLSKNTLECYKRDIVQYLIYIDHVVNQDLFLTNKTTVITYLLHLQKSGKSTA 68 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----QFKSFWS 187 + + L S+R +K+ + + + +P +++E PK + + T E++ Q Sbjct: 69 TISRNLASIRCFYKFLLLNKRMDYDPTINLEAPKIERKTPMTLTLEEVDLLLSQPLEITD 128 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247 +G++ + E L +G+R ++ ++ + N+ I+ + ++ L Sbjct: 129 KGARDKAMLELLYATGIRVTELISLNLEDVNLNLGFIRCHNGSKERFIPTGSIALESLTK 188 Query: 248 TPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSAT 295 F+ N + ++ F KA ++ + K + + +R AT Sbjct: 189 YIENHRASFLKDPSERSLFLNYYGKPLSRQGFWKIIKAYTEQSNIEKSITPNTLRHSFAT 248 Query: 296 ISADAGATAHELMATYGWKTVDQAETYT 323 GA + G + + Y Sbjct: 249 HLIQNGADLKSVQEMLGHADISTTQIYA 276 >gi|27375557|ref|NP_767086.1| site-specific tyrosine recombinase XerC [Bradyrhizobium japonicum USDA 110] gi|34222842|sp|Q89X68|XERC_BRAJA RecName: Full=Tyrosine recombinase xerC gi|27348694|dbj|BAC45711.1| xerC [Bradyrhizobium japonicum USDA 110] Length = 321 Score = 126 bits (315), Expect = 7e-27, Method: Composition-based stats. Identities = 35/299 (11%), Positives = 86/299 (28%), Gaps = 34/299 (11%) Query: 66 KKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQ----IIRKSGD----FDYRKITT 116 ++ ++ + L+ + ++ Q + G+ + + Sbjct: 13 SADPSIAQEMTRWLSHLGAERRLSPKTLEAYGRDLRQCLDFLCNHWGERVTLKRFAALEA 72 Query: 117 KHIRSGVESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 +R+ + R+ S ++ L +R ++ R+ + ++ PK +P Sbjct: 73 TDVRAFMAMRRADDIAGRSLMRALAGLRSFGRFLEREGKGKVGALSAIRAPKVAKSLPKP 132 Query: 174 WTK---------EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 ++ + ++ L SGLR S++ + + Sbjct: 133 LPMASAKRLADADERAGEERETWILARDAAVMALLYGSGLRISEALGLKRREVPKPGEGD 192 Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ----------KMNATQFSIWFK 274 TG + +LA+ + ++ + + Sbjct: 193 VLVVTGKGNKTRMVPVLQNVLALVQEYVSMCPYPLPAEGPIFVGARGGPLSPRIIQLAME 252 Query: 275 AKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 G+ + H +R AT G + G ++ + YT G D RL Sbjct: 253 RLRGALGLPDSATPHALRHSFATHLLSRGGDLRAIQELLGHSSLSTTQIYT-GIDSERL 310 >gi|116494889|ref|YP_806623.1| integrase [Lactobacillus casei ATCC 334] gi|191638400|ref|YP_001987566.1| Tyrosine recombinase xerC [Lactobacillus casei BL23] gi|301066449|ref|YP_003788472.1| integrase [Lactobacillus casei str. Zhang] gi|122263693|sp|Q039E1|XERC_LACC3 RecName: Full=Tyrosine recombinase xerC gi|254799345|sp|B3WEA7|XERC_LACCB RecName: Full=Tyrosine recombinase xerC gi|116105039|gb|ABJ70181.1| tyrosine recombinase XerC subunit [Lactobacillus casei ATCC 334] gi|190712702|emb|CAQ66708.1| Tyrosine recombinase xerC [Lactobacillus casei BL23] gi|300438856|gb|ADK18622.1| Integrase [Lactobacillus casei str. Zhang] gi|327382429|gb|AEA53905.1| Site-specific recombinase [Lactobacillus casei LC2W] gi|327385628|gb|AEA57102.1| Site-specific recombinase [Lactobacillus casei BD-II] Length = 298 Score = 126 bits (315), Expect = 7e-27, Method: Composition-based stats. Identities = 38/291 (13%), Positives = 87/291 (29%), Gaps = 29/291 (9%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-------FDYRKITTKHIRSGVES 125 EY + + + ++ S + + + + + Sbjct: 5 AAFQEYLE--VERQYSPETVTAYLSDLQEFQAFLKANGGFTDFRHVDDLDVQTYLTDLNK 62 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS- 184 + +S + ++S+R +++ R + V NP VE K+ + + + ++Q+ Sbjct: 63 QDLARTSIARKISSLRSFYRYLTRIDVVKRNPFELVELKKQHHHLPQFFYEAEIQELFKT 122 Query: 185 ---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDG 240 + R E L +G+R S+ + + + N + K V Sbjct: 123 VAGKTPLDQRNRALLEVLYGTGIRVSECAKLTLNQVDFNTALLLIHGKGNKDRYVPFGQY 182 Query: 241 FMKLLAMT------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 + L F+N + + + + + N Sbjct: 183 AQQALRTYLKDGRQVLMAKSQAQHRYVFVNQYGRPITSRGIEYILDQLIKQTTLTANIHP 242 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 H +R AT D GA + G ++ + YT L + + Sbjct: 243 HMLRHSFATHMLDHGADLRTVQELLGHASLSTTQIYTHVT-MAHLKNEYMK 292 >gi|314936587|ref|ZP_07843934.1| tyrosine recombinase XerC [Staphylococcus hominis subsp. hominis C80] gi|313655206|gb|EFS18951.1| tyrosine recombinase XerC [Staphylococcus hominis subsp. hominis C80] Length = 297 Score = 126 bits (315), Expect = 7e-27, Method: Composition-based stats. Identities = 37/265 (13%), Positives = 89/265 (33%), Gaps = 20/265 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKH---TPSSAIQFLTS 139 + + ++ ++ Q + + R K R+ + ++ + +++ Sbjct: 16 RNFSDHTLKAYHDDLAQFNQFLEQELLNLRTFEYKDARNYLSYLYSNNLKRTTVSRKIST 75 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLA 195 +R +++ + Q+ NP + + PK++ + + +E+M+ + +G + R+ Sbjct: 76 LRTFYEFWMTQDTSVNNPFIQLVHPKKEQYLPQFFYEEEMEALFNTVSNDAKKGLRDRVV 135 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLAMT------ 248 E L +G+R S+ V L N K V + + + Sbjct: 136 IELLYATGIRVSELVNIKVMDLDMNLPGVKVLGKGNKERFVPFGEFCRQSIEQYLEKFKP 195 Query: 249 --PIGKETFFINNDKQKMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGATA 304 +N + + AGV H +R AT + GA Sbjct: 196 LKSKSHPYLIVNMKGDPITERGIRYLLNDVVKRTAGVTEIHPHKLRHTFATHLLNQGADL 255 Query: 305 HELMATYGWKTVDQAETYTKGADRI 329 + + G + YT +++ Sbjct: 256 RTVQSLLGHVNLSTTGKYTHVSNQQ 280 >gi|298386165|ref|ZP_06995722.1| tyrosine recombinase XerC [Bacteroides sp. 1_1_14] gi|298261393|gb|EFI04260.1| tyrosine recombinase XerC [Bacteroides sp. 1_1_14] Length = 293 Score = 126 bits (315), Expect = 7e-27, Method: Composition-based stats. Identities = 50/276 (18%), Positives = 99/276 (35%), Gaps = 24/276 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSGV---ES 125 LI + + + + + +++ Q+ G FD ++ + IR + Sbjct: 2 LIKSFLDYLRYERNYSEKTVLAYGEDIKQLQEFAQEEYGKFDPLEVEGELIREWIVSLMD 61 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 R +T +S + L+S+R +K+ +RQ V ++P + PK K + +M + Sbjct: 62 RGYTSTSVNRKLSSLRSFYKYLLRQGEVTVDPLRKITGPKNKKPLPVFLKENEMDKLLDD 121 Query: 186 W-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 +G + RL E +G+R S+ + + + +K + Sbjct: 122 TDFGEGFKGCRDRLIIEMFYATGMRLSELIGLDDKDVDFSASLLKVTGKRNKQRLIPFGD 181 Query: 241 FMKLLAMTPIGKET---------FFINNDKQKMNATQFSIWFKA-KATKAGVNK-SAHGV 289 +K L + I FFI D ++ K + A + K S H + Sbjct: 182 ELKELMLEYINVRNEAIPERSKAFFIKEDGGRLYKNLVYNLVKRNLSKVATLKKRSPHVL 241 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 R AT + A + G +++ E Y Sbjct: 242 RHTFATTMLNNDAELGAVKELLGHESIATTEIYAHA 277 >gi|288553072|ref|YP_003425007.1| integrase/recombinase [Bacillus pseudofirmus OF4] gi|288544232|gb|ADC48115.1| integrase/recombinase [Bacillus pseudofirmus OF4] Length = 321 Score = 126 bits (315), Expect = 7e-27, Method: Composition-based stats. Identities = 41/272 (15%), Positives = 91/272 (33%), Gaps = 26/272 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFD---YRKITTKHIRSGVESRKHTPSSAI---QFLT 138 + ++++ S+ S + + + + +T +RS + + + ++ Sbjct: 40 KNYSLHTVKSYLSDIEDFCHFMKEHNCAAFSDVTYLFVRSYLTFLYDKAYARNSVARKIS 99 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194 SMR LF + +R+E + N PK+ ++ +E+M + + + + R Sbjct: 100 SMRSLFHFLMREEELTRNVFAETHLPKQASKLPSFLYEEEMDELFKAFEGNTPLDKRDRA 159 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253 E L +G+R + + V + + K V + L Sbjct: 160 ILELLYATGMRVGECSQLDVADIDLRIGTAFVKGKGNKERYVPIGSFACDALHEYIEDAR 219 Query: 254 TF------------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISAD 299 F+N + + +A + + H +R AT + Sbjct: 220 VNLLKKGNSETKRLFLNYRGGPLTDRSIRRMLAKRVEEASMQKHIRPHDLRHSFATHLLN 279 Query: 300 AGATAHELMATYGWKTVDQAETYTKGA-DRIR 330 GA + G + + + YT DR+R Sbjct: 280 NGADLRVVQELLGHEHLSTTQVYTHVTKDRLR 311 >gi|289432900|ref|YP_003462773.1| tyrosine recombinase XerD [Dehalococcoides sp. GT] gi|288946620|gb|ADC74317.1| tyrosine recombinase XerD [Dehalococcoides sp. GT] Length = 302 Score = 126 bits (315), Expect = 7e-27, Method: Composition-based stats. Identities = 37/283 (13%), Positives = 90/283 (31%), Gaps = 30/283 (10%) Query: 85 GSLAVNSRISFESYFDQI-------IRKSGDFD-YRKITTKHIRSGVESRKHTP---SSA 133 + N+ ++E+ Q+ KSG + T + + + + K ++ Sbjct: 16 KGFSENTSEAYENDLRQMTTFADKEAAKSGKIPGWDNFTRQTMLAYMLDLKERNYAITTV 75 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-----E 188 ++ + + + F + V + + NP ++ PK + ++ + E Sbjct: 76 VRKMAAAKSFFNFMVAEGKLKENPTENISTPKVGKPLPDAISISQVRALLNQPVKSGSSE 135 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAM 247 + + E L SG+R ++ + + ++ + + + + Sbjct: 136 AKRDKAMLELLYASGMRVTELVNLNMLDVDLKEGFVRCFGKGRKERMIPIYPQAAQSVQE 195 Query: 248 TPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSAT 295 F+N ++ KA A +AG++ + H +R AT Sbjct: 196 YLNEIRPNLVRAEAEKALFLNRRGDRLTRQGLWQILKAYAREAGLDDVVTPHTLRHSFAT 255 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRI-RLGIKNSR 337 GA + G + + YT R + + Sbjct: 256 HMLSGGADLRSVQELLGHANISTTQIYTHLTSEHIRRSYEKAH 298 >gi|152992017|ref|YP_001357738.1| site-specific DNA tyrosine recombinase XerD [Sulfurovum sp. NBC37-1] gi|151423878|dbj|BAF71381.1| site-specific DNA tyrosine recombinase XerD [Sulfurovum sp. NBC37-1] Length = 271 Score = 126 bits (315), Expect = 7e-27, Method: Composition-based stats. Identities = 35/263 (13%), Positives = 80/263 (30%), Gaps = 19/263 (7%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 EY L + S+ Q+ K+ T + + + ++ + Sbjct: 7 AFEEYISVTKA--LDALTISSYLGDLRQLEEAV-QKPLTKLDTTDVLKFLSTFENK-RTL 62 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWSEG 189 + L+S+ F + Q + + + K + + E++ + + G Sbjct: 63 NRKLSSINTFFHFCHLQNFTHEK--IRIPMAKVPKNLPKYLSPEEIMEGISLIDRSSTIG 120 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT----VELPDGFMKLL 245 + FL SG R S++ A + I+ K + L Sbjct: 121 LRDYALILFLYASGCRISEALNAQRSDILEGWLKIRFAKGEKERVVPLAPIAIEAVEAYL 180 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAH 305 + ++N ++++ K + S H +R A+ GA Sbjct: 181 QAQDMSSSYLWLNYRAEQLSRISAYKIVKKY-----LGVSPHVLRHSFASSLIIGGADLR 235 Query: 306 ELMATYGWKTVDQAETYTKGADR 328 + G +++ + YT + Sbjct: 236 VVQELLGHSSLETTQIYTHIQKQ 258 >gi|73748904|ref|YP_308143.1| tyrosine recombinase XerD [Dehalococcoides sp. CBDB1] gi|147669665|ref|YP_001214483.1| tyrosine recombinase XerD subunit [Dehalococcoides sp. BAV1] gi|73660620|emb|CAI83227.1| tyrosine recombinase XerD [Dehalococcoides sp. CBDB1] gi|146270613|gb|ABQ17605.1| tyrosine recombinase XerD subunit [Dehalococcoides sp. BAV1] Length = 302 Score = 126 bits (315), Expect = 7e-27, Method: Composition-based stats. Identities = 37/283 (13%), Positives = 90/283 (31%), Gaps = 30/283 (10%) Query: 85 GSLAVNSRISFESYFDQI-------IRKSGDFD-YRKITTKHIRSGVESRKHTP---SSA 133 + N+ ++E+ Q+ KSG + T + + + + K ++ Sbjct: 16 KGFSENTSEAYENDLRQMTTFADKEAAKSGKIPGWDNFTRQTMLAYMLDLKERNYAITTV 75 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-----E 188 ++ + + + F + V + + NP ++ PK + ++ + E Sbjct: 76 VRKMAAAKSFFNFMVAEGKLKENPTENISTPKVGKPLPDAISISQVRALLNQPIKSGSSE 135 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAM 247 + + E L SG+R ++ + + ++ + + + + Sbjct: 136 AKRDKAMLELLYASGMRVTELVNLNMLDVDLKEGFVRCFGKGRKERMIPIYPQAAQSVQE 195 Query: 248 TPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSAT 295 F+N ++ KA A +AG++ + H +R AT Sbjct: 196 YLNEIRPNLVRAEAEKALFLNRRGDRLTRQGLWQILKAYAREAGLDDVVTPHTLRHSFAT 255 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRI-RLGIKNSR 337 GA + G + + YT R + + Sbjct: 256 HMLSGGADLRSVQELLGHANISTTQIYTHLTSEHIRRSYEKAH 298 >gi|269978219|ref|ZP_06185169.1| tyrosine recombinase XerD [Mobiluncus mulieris 28-1] gi|269933728|gb|EEZ90312.1| tyrosine recombinase XerD [Mobiluncus mulieris 28-1] Length = 319 Score = 126 bits (315), Expect = 7e-27, Method: Composition-based stats. Identities = 44/285 (15%), Positives = 89/285 (31%), Gaps = 32/285 (11%) Query: 85 GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHT--------PSSA 133 + ++ +++ + + G ++T + V + +S Sbjct: 28 RGASPHTIAAYQRDLQRYVAYLQILGRDTLAQVTEVDLEGFVRALGDGFASFPPLGSTSV 87 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-----WSE 188 + L + R ++ + N SV+ K E+M+ + S Sbjct: 88 RRCLAAARSWHRYLFDSGSLGANVASSVKPAKLPRRLPETLNLEEMEALLAAASSPGDSN 147 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL---- 244 + R EFL SG R S++ + + + G + + Sbjct: 148 SLRDRALLEFLYASGARISEAMNLVLDDIDFETEPALVRLFGKGRKERISMLGRQACQAL 207 Query: 245 ----------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292 LA F+N + M+ +A A +A +++ H +R Sbjct: 208 QAYLVRVRPTLAEKGQSIGRVFLNTYGKPMSRQTAWAIIQAAAKRAQIDRPVHPHTLRHC 267 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 AT GA + G +V E YTK + ++ L + S Sbjct: 268 FATHLLQGGADIRVVQELLGHASVTTTEIYTKVSKQMLLEVYASA 312 >gi|284037325|ref|YP_003387255.1| tyrosine recombinase XerD [Spirosoma linguale DSM 74] gi|283816618|gb|ADB38456.1| tyrosine recombinase XerD [Spirosoma linguale DSM 74] Length = 305 Score = 126 bits (315), Expect = 7e-27, Method: Composition-based stats. Identities = 44/281 (15%), Positives = 100/281 (35%), Gaps = 28/281 (9%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI--------RS 121 + I+ ++ SLA NS ++ +++ D + T + Sbjct: 2 WQSYINAFKNYLKLERSLAENSVEAYLHDAEKLYEYILLTDPAR-TPMQVTEKELMNFLK 60 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + + S + L+ ++ FK+ + + + +P +E PK + + +++ Sbjct: 61 YLGELGLSAHSQARMLSGIKSFFKYLLLEGLIERDPTQLLESPKLGRKLPDTLSFPEIED 120 Query: 182 FKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK------------ 225 + G++ R E L SGLR S+ + + ++ Sbjct: 121 MLAAIDLSTPGGTRDRAMLEVLYSSGLRVSELLNLRLTNCFFTEGFVRVLGKGDKVRLVP 180 Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285 + T + + L + ++T F+N ++++ K A++ G+ K+ Sbjct: 181 IGEDAMHYTRIYVEHVRQKLDVQKGDEDTIFLNLRGKQLSRISVFTTIKKLASEVGIKKT 240 Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H R AT + GA + G +++ E YT Sbjct: 241 ISPHTFRHSFATHLIEGGADLRAVQQMLGHESITTTEIYTH 281 >gi|327398234|ref|YP_004339103.1| integrase family protein [Hippea maritima DSM 10411] gi|327180863|gb|AEA33044.1| integrase family protein [Hippea maritima DSM 10411] Length = 283 Score = 126 bits (315), Expect = 7e-27, Method: Composition-based stats. Identities = 45/277 (16%), Positives = 97/277 (35%), Gaps = 19/277 (6%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK----HIRSGVESRK 127 + ++ +Y+ + N++ + SYF + ITT +I ++S+ Sbjct: 2 EKVLRQYKDLLIQKRYSQNTQDIYYSYFKDFCVYFQNEKLMNITTAQINSYILDLIKSKN 61 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + S Q + +++ + + + RPK++ + + +K++++ Sbjct: 62 ISISQQNQRINAIK----FYYEKVMGGEKQYYELHRPKKEHKLPKVLSKKEVKIIFDVT- 116 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPDGFMKLL 245 + + + +GLR S+ + + I K L D + LL Sbjct: 117 SNLKHKCILMLIYSAGLRRSEPLNLAPTDIDSERMIIHINGAKGKKDRISLLSDNLLNLL 176 Query: 246 AMTPIGKETFFINNDKQK---MNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADA 300 + QK + T + K A KAG+ K+ H +R AT + Sbjct: 177 LKYYKEYRPQKYLFEGQKGGMYSPTSIANILKKAAIKAGIKKTVTPHMLRHSFATHLLEQ 236 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 G + G ++ E YT + + I + Sbjct: 237 GTDLRYIQELLGHESSKTTEIYTHVS---KKAIDKIK 270 >gi|38234089|ref|NP_939856.1| site-specific tyrosine recombinase XerC [Corynebacterium diphtheriae NCTC 13129] gi|38200351|emb|CAE50037.1| Putative integrase/recombinase [Corynebacterium diphtheriae] Length = 302 Score = 126 bits (315), Expect = 7e-27, Method: Composition-based stats. Identities = 39/284 (13%), Positives = 93/284 (32%), Gaps = 27/284 (9%) Query: 71 LKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--- 126 L L+ ++ + G + + S++S + + + T ++R + Sbjct: 5 LTELVDDFCEYLDLGLGRSPATVRSYKSDLFGFVNRFAT--LDQFTLDNVREWLAQAVAD 62 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + ++ + S++ W +R Y I+ + PK + ++ M Sbjct: 63 GKSRATIARRTASIKAFSGWLLRNGYNDIDVAARLVAPKVQRTLPMVVSERTMTNIVEKP 122 Query: 187 SEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDG 240 + + + R E L SG+R S+ C + + + V D Sbjct: 123 ASTTEDTFVRDRAICELLYASGIRVSELCGLNTGDVDLKRQTARVTGKGNKQRVVPFGDQ 182 Query: 241 FMKLLAMTPIGKETFFINNDKQ--------------KMNATQFSIWFKAKATKAGVN-KS 285 L+ G + + + +++ Q + + G+ + Sbjct: 183 ATAALSHWLNGVRSEMLISAGCTSGVDALFVGVRGKRIDPRQVRRIVETSGQEHGIGGLA 242 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 H +R +AT D GA + G +++ + YT + + Sbjct: 243 PHALRHTAATHLLDNGADLRVVQEMLGHSSLNTTQIYTHVSTQR 286 >gi|189465402|ref|ZP_03014187.1| hypothetical protein BACINT_01751 [Bacteroides intestinalis DSM 17393] gi|189437676|gb|EDV06661.1| hypothetical protein BACINT_01751 [Bacteroides intestinalis DSM 17393] Length = 294 Score = 126 bits (315), Expect = 7e-27, Method: Composition-based stats. Identities = 47/277 (16%), Positives = 100/277 (36%), Gaps = 24/277 (8%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGV---E 124 WL + + + + + S+ Q + GD ++ + +R + Sbjct: 2 WLTDSFLDYLQYERNYSEETIKSYREDLRQFEEFAREEIGDSAPSEVKAELVREWIVSLM 61 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 R +T +S + L+S+R +K+ +R+ VA+NP + PK K + DM + Sbjct: 62 DRGYTSTSINRKLSSLRSFYKFLLRKGEVAVNPLQKITGPKNKKPLPAFLRESDMDRLLD 121 Query: 185 FW-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239 +G + + E +G+R S+ + + + IK + Sbjct: 122 EVDFGEGFKGCRDHMIIEMFYATGVRLSELIGLDNKDVDFSSSLIKVTGKRNKQRLIPFG 181 Query: 240 GFMKLLAMTPIGKET---------FFINNDKQKMNATQFSIWFKAKATKA--GVNKSAHG 288 +K+ M + FF+ + ++++ + K +K +S H Sbjct: 182 EELKIAMMEYVDVRNEAVPIRTNAFFVRENGERLSRSIVENLVKRNLSKVVTLKKRSPHV 241 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 +R AT + A + G +++ E YT Sbjct: 242 LRHTFATTMLNHDAELGAIKELLGHESLATTEVYTHT 278 >gi|171742561|ref|ZP_02918368.1| hypothetical protein BIFDEN_01674 [Bifidobacterium dentium ATCC 27678] gi|283456353|ref|YP_003360917.1| Integrase/recombinase [Bifidobacterium dentium Bd1] gi|306822472|ref|ZP_07455850.1| tyrosine recombinase XerD [Bifidobacterium dentium ATCC 27679] gi|309801397|ref|ZP_07695524.1| site-specific tyrosine recombinase XerC [Bifidobacterium dentium JCVIHMP022] gi|171278175|gb|EDT45836.1| hypothetical protein BIFDEN_01674 [Bifidobacterium dentium ATCC 27678] gi|283102987|gb|ADB10093.1| Integrase/recombinase [Bifidobacterium dentium Bd1] gi|304554017|gb|EFM41926.1| tyrosine recombinase XerD [Bifidobacterium dentium ATCC 27679] gi|308221912|gb|EFO78197.1| site-specific tyrosine recombinase XerC [Bifidobacterium dentium JCVIHMP022] Length = 306 Score = 126 bits (315), Expect = 7e-27, Method: Composition-based stats. Identities = 46/286 (16%), Positives = 92/286 (32%), Gaps = 34/286 (11%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVES--RK 127 Y K+ L+ N+R ++ ++ + G D ++T + +R + ++ Sbjct: 8 DAFDAYLKAN--RGLSDNTRKAYRGDLEECMTQLEILGCEDLNEVTIEDLRMWMSQSSKR 65 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 H SS + ++R F W + NP + PK ++ ++ Sbjct: 66 HARSSMARKTVAVRGFFAWTHERGVTNANPAAMLMTPKIPDTLPAVLSESQAEKLMDCVD 125 Query: 188 E---------------GSQPRLAFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGT 231 E G + E L +G+R ++ V + +N T K Sbjct: 126 EQMPKSRTKSVRKQAVGLRNAAMLEVLYATGIRVAELVGLDVHDVAFDNRTMKVTGKGNK 185 Query: 232 IITVELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAG 281 V + + F+ +++ A +AG Sbjct: 186 QRVVPFGVPAEQSIRRWLEDGRPRLVRARSADALFLGAQGNRIDQRVVRQVVHECAQRAG 245 Query: 282 VN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 V S H +R +AT D GA ++ G ++ + YT + Sbjct: 246 VPDISPHALRHSAATHLLDGGADLRQVQELLGHSSLKTTQRYTHVS 291 >gi|225620975|ref|YP_002722233.1| site-specific recombinase XerD [Brachyspira hyodysenteriae WA1] gi|225215795|gb|ACN84529.1| site-specific recombinase XerD [Brachyspira hyodysenteriae WA1] Length = 297 Score = 126 bits (315), Expect = 7e-27, Method: Composition-based stats. Identities = 52/283 (18%), Positives = 95/283 (33%), Gaps = 24/283 (8%) Query: 78 YRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTP---S 131 Y L+ N+ S++ + K T K I + RK Sbjct: 2 YLNYEAVEKGLSSNTLESYKRDIVIYLDFLSRNKKSILKATRKDIEKFLSERKEQGSKSR 61 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE--- 188 + + S+ L+K+ V + Y++ NP ++E + K T ++ + +E Sbjct: 62 TVARNKVSIVNLYKFLVMENYISKNPTDNLEVIRLKRVLPESLTDTEVDDLLAVHNEKTD 121 Query: 189 -GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVELPDGFMKLLA 246 G + + FE + SGLR S+ C + + +K G V + D + +L Sbjct: 122 KGLRDKAIFELMYSSGLRVSEICSLKIDDIFFEGKYLKICGKGKRERIVPINDRALDILQ 181 Query: 247 MTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSA 294 + N K++ K K+ + K+ H +R A Sbjct: 182 RYIQTSRVIMVKGKKTSELFLNFRGDKISRVGIWKIVKEAMKKSKIEKNIYPHTLRHSFA 241 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 T GA + G + E YT D L + ++ Sbjct: 242 THLIQHGADLRAVQRMLGHSDITTTEIYTH-VDSAHLKKQIAK 283 >gi|260467239|ref|ZP_05813415.1| integrase family protein [Mesorhizobium opportunistum WSM2075] gi|319782065|ref|YP_004141541.1| integrase family protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|259029014|gb|EEW30314.1| integrase family protein [Mesorhizobium opportunistum WSM2075] gi|317167953|gb|ADV11491.1| integrase family protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 396 Score = 126 bits (315), Expect = 7e-27, Method: Composition-based stats. Identities = 59/369 (15%), Positives = 115/369 (31%), Gaps = 36/369 (9%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYINSP-RKKPTTLK 72 R ++GK+ Y +R I+LP P + F AY +A G I+ P R P T Sbjct: 16 RIKNGKLTYRYRAKGMPEIQLPGKPGDPEFEVAYENATQGQHKNAVIIDLPGRALPKTFG 75 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIR---------KSGDFDYRKITTKHIRSGV 123 + W ++ ++ + + + +R+ + Sbjct: 76 HAARRLETTMEWLDFDEATQRKNARLIERFLSLKVDPAYPLTWRETPVEHLDADRLRAII 135 Query: 124 ESRKHTPSS-AIQFLTSMRVLFKW---AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 E T + A L +++ L + +P LS+ K+ W Sbjct: 136 EGIFRTNRTVAKHMLVAIKKLVWVATDIEKWIKPQDDPSLSIRVRVPKSTKNPAWPIAMR 195 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH------------------LQNNI 221 + F+ G+ R + + G R D Sbjct: 196 ETFEERHPVGTAARTCYALGFWLGNRRGDIAALAWDDLLTEEIELFDGSLVLIEAFDFRQ 255 Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF-INNDKQKMNATQFSIWFKAKATKA 280 + + G + + + D L K N + S + +A Sbjct: 256 KKNRNRHGGREMFIPVVDKLAAALDPLDRSKGGTVLKNGYGNPFSEKSLSGMMQHWTRQA 315 Query: 281 GVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338 G+ + HG+R+ T A+ A +M G ++ + Y + A++ R+ + +R Sbjct: 316 GIPSGYTLHGLRRTFGTYLAECNIQARAIMEAMGHSSMAVTDDYVREANKKRIAVDIARA 375 Query: 339 ISSVVDSDD 347 I+ D Sbjct: 376 INEREAKRD 384 >gi|315181198|gb|ADT88112.1| phage integrase family protein [Vibrio furnissii NCTC 11218] Length = 395 Score = 126 bits (315), Expect = 7e-27, Method: Composition-based stats. Identities = 59/361 (16%), Positives = 117/361 (32%), Gaps = 29/361 (8%) Query: 10 FVTKERTRHGKIIYYFRK---GHGRRIRLPYPHESTFIPAYMSALTGSTPK-----REYI 61 + R G+ + FR G + I+L A A + I Sbjct: 37 GLKMIVNRQGRKRFLFRYTLHGTKKSIQLGEYPGLDINTARQIANDHKREIALGNDPKAI 96 Query: 62 NSPRKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHI 119 ++ T + Y A L + S K G I + I Sbjct: 97 RDEKRNVLTFQEFSELHYLPYAMMNKL---TAKSDAGSLKLHFYPKWGKKPLTDIGQQDI 153 Query: 120 RSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 + ++ P++ + + + +F+ A+ +V NP + + K R ++ Sbjct: 154 QKLLDGLLEGRKPATVNRLRSLVLRMFRLAMEWGFVDKNPGQYIRKLKENNVRQRFLSRA 213 Query: 178 DMQQFKSFWSEGSQ--PRLAFEFLLYSGLRCSDSCRAGVQHLQ-----NNIFSIKTQKTG 230 ++ +F +E A +F L +G+R + + + L N + K+G Sbjct: 214 EVSRFIKACNEEPNRTQSNALKFALLTGMRIGEITSSKWECLTVDDDGNWSLFLPHTKSG 273 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI---WFKAKATKAGV--NKS 285 TV L +++ ++ + F AG+ N Sbjct: 274 LSRTVLLNQLAKEVIHDQRRFQQPKNPYIFAGDAPGRPIAHPKKAFARIKKAAGITDNFR 333 Query: 286 AHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSRRISSVV 343 H +R A+I ++G AT +++ G ++ + Y A R+R N + V Sbjct: 334 IHDLRHSFASILINSGNATLYDVQHLLGHQSPQTSTRYAHLASSRLREVSANVAELVGDV 393 Query: 344 D 344 Sbjct: 394 G 394 >gi|298529892|ref|ZP_07017294.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] gi|298509266|gb|EFI33170.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] Length = 386 Score = 126 bits (315), Expect = 7e-27, Method: Composition-based stats. Identities = 59/345 (17%), Positives = 120/345 (34%), Gaps = 29/345 (8%) Query: 9 PFVTKERTRHGKIIYYFR----KGHGRRIRLPYPHESTFIPAYMS--ALTGSTPKREYIN 62 + E G Y+ R +G ++I+L + + A + G + Sbjct: 31 RGLILEVRPTGVKTYFIRYKTLRGRYKQIKLGRATDLSVNQARKLGHKILGDVAMGKDPQ 90 Query: 63 SPRKK---PTTLKW-LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH 118 +K T + + EY + + + + +I K G +I H Sbjct: 91 QEKKVLQSVPTFEEFVWHEYLPYIKSYKKSWKTDVILLR--NHLIPKFGGMHMDQIKRDH 148 Query: 119 IRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEY--VAINPCLSVERPKRKTEGIRP 173 I S + + P++A + + +R +F A++ + V NP V + + R Sbjct: 149 IISLHQQCLLADYKPATANRLVVLLRYIFNLALKWDTAGVRTNPTKEVTLAEENNQRDRY 208 Query: 174 WTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQN----NIFSIKTQ 227 K ++ + E P L LL +G R S+ +A + Sbjct: 209 LDKNELDRLCKALKESENPLLEPIILMLLLTGARKSEVLKAKWHNFDFERRTWQIPGTDT 268 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK---ATKAGV-N 283 KTG T+ L D +++L ++ + F+ F++ KAG+ Sbjct: 269 KTGKTRTIPLSDSALEVLDKIKYVDGCPYVFPN--PDTQKPFTAIFRSWDTARKKAGLGE 326 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 H +R ++ ++G + +E+ G + Y A++ Sbjct: 327 VRIHDLRHSFSSFLINSGRSIYEVSELLGHTQIKTTMRYAHLANQ 371 >gi|229552209|ref|ZP_04440934.1| site-specific recombinase XerD [Lactobacillus rhamnosus LMS2-1] gi|229314431|gb|EEN80404.1| site-specific recombinase XerD [Lactobacillus rhamnosus LMS2-1] Length = 298 Score = 126 bits (315), Expect = 7e-27, Method: Composition-based stats. Identities = 39/291 (13%), Positives = 85/291 (29%), Gaps = 29/291 (9%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-------FDYRKITTKHIRSGVES 125 EY + + ++ + + + + + + Sbjct: 5 AAFQEYLT--VERQYSPETVTAYLNDIQEFQAFLKANGGFTDFSKVDDLDVQTYLTDLNK 62 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT----KEDMQQ 181 + +S + ++S+R +++ VR + V NP VE K+ + + +E + Sbjct: 63 QALARTSIARKISSLRSFYRYLVRIDVVKRNPFELVELKKQHHHLPQFFYEAEIQELFKT 122 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDG 240 + + R E L +G+R S+ + + N + K V Sbjct: 123 VEGETPLDQRNRALLEVLYGTGIRVSECANLTLNQVDFNTGLLLIHGKGNKDRYVPFGRY 182 Query: 241 FMKLLA------------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 + L F+N + + A + + N Sbjct: 183 AQRALQTYLKDGRQTLMNKHDAQHRFVFVNQYGRPITARGIEYILDQLIKQTSLTANIHP 242 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 H +R AT D GA + G ++ + YT L + + Sbjct: 243 HMLRHSFATHMLDHGADLRTVQELLGHASLSTTQIYTHVT-MAHLKNEYMK 292 >gi|307297306|ref|ZP_07577112.1| integrase family protein [Thermotogales bacterium mesG1.Ag.4.2] gi|306916566|gb|EFN46948.1| integrase family protein [Thermotogales bacterium mesG1.Ag.4.2] Length = 299 Score = 126 bits (315), Expect = 7e-27, Method: Composition-based stats. Identities = 36/291 (12%), Positives = 93/291 (31%), Gaps = 28/291 (9%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHI-------- 119 + ++++ + +++ N+ ++ S + DY+ + K I Sbjct: 3 FSEAVERFKENMEFVRNMSSNTVAAYLSDLHHFELFLNERGIDYKSVKRKDIELFVKEYS 62 Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + ++ + ++ + L+++R + + V+ P ++ PK + T +++ Sbjct: 63 QGKYSRKRPSATTVARNLSTIRSFYTFLYISGTVSKVPTELIKNPKTRRRIPDYITHDEV 122 Query: 180 QQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 + S + + G + + + + GLR S+ C+ + L+ +G Sbjct: 123 MEILSSFRSTNLGKRNKAIVAIMYFCGLRVSEVCKLRLGDLRMGNSPAVRIMSGKGNRDR 182 Query: 237 LPDGFMKLL------------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284 ++L ++ FI + M + K Sbjct: 183 EVPMNDQVLSIVKEYLQIRREFPMSEYEDHVFIGTRGEPMARNVIPKVLNTQVKYVYPEK 242 Query: 285 S--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 H R AT GA+ + G + Y D+ + Sbjct: 243 RVHPHLFRHSFATQLLQKGASIKIVQELLGHANLSTTSIYLHITDKEKRAA 293 >gi|215489139|ref|YP_002331570.1| site-specific tyrosine recombinase XerC [Escherichia coli O127:H6 str. E2348/69] gi|312969461|ref|ZP_07783663.1| tyrosine recombinase XerC [Escherichia coli 2362-75] gi|254799331|sp|B7UNC8|XERC_ECO27 RecName: Full=Tyrosine recombinase xerC gi|215267211|emb|CAS11659.1| site-specific tyrosine recombinase XerC [Escherichia coli O127:H6 str. E2348/69] gi|312286008|gb|EFR13926.1| tyrosine recombinase XerC [Escherichia coli 2362-75] gi|320197620|gb|EFW72232.1| Tyrosine recombinase XerC [Escherichia coli WV_060327] gi|325499220|gb|EGC97079.1| site-specific tyrosine recombinase XerC [Escherichia fergusonii ECD227] Length = 298 Score = 126 bits (315), Expect = 7e-27, Method: Composition-based stats. Identities = 42/278 (15%), Positives = 89/278 (32%), Gaps = 21/278 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SRK 127 + Y + L+ + ++++ + II + + + + + Sbjct: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +S L+++R F W V Q + NP V PK + +DM + Sbjct: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI 127 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243 + R E + +GLR S+ ++HL + K + + + Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187 Query: 244 LLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 + + F +D ++++A F K G+ + H +R A Sbjct: 188 WIEHWLDLRNLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 T ++ + G + + YT D L Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 284 >gi|50954349|ref|YP_061637.1| site-specific tyrosine recombinase XerD [Leifsonia xyli subsp. xyli str. CTCB07] gi|50950831|gb|AAT88532.1| integrase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 301 Score = 126 bits (315), Expect = 7e-27, Method: Composition-based stats. Identities = 37/282 (13%), Positives = 86/282 (30%), Gaps = 27/282 (9%) Query: 69 TTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGVE 124 T+ + Y + L+ N+ ++ +T + + ++ Sbjct: 1 MTVPADVDAYLRHVAIERGLSANTVAAYRRDLAVYAGWLAVEQVTQTAAVTPATVSAYLQ 60 Query: 125 SRKHTP------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 SS + L+++R ++ + + V ++ + PK + + + Sbjct: 61 HLATRGESPLTASSLARMLSTVRSFHRFLLEEGRVTVDAAHDIRPPKLPSRLPKAIGVDQ 120 Query: 179 MQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234 + + + + E + +G R S++ V + + T K Sbjct: 121 VAALLAATDGDDLADLRDKALLELMYATGARVSEAVGLNVDDVIDTDVVRLTGKGAKQRI 180 Query: 235 VELPDGFMKL-----------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV- 282 V L L+ F+ +++ + +A A +A + Sbjct: 181 VPLGSYARAAVSAYLVRARPTLSTRGRATPALFLGMRGARLSRQNVWLIIRAAADRADLT 240 Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 S H +R AT GA + G +V + YT Sbjct: 241 VEVSPHILRHSFATHLLAGGADVRVVQELLGHSSVATTQLYT 282 >gi|15676649|ref|NP_273793.1| integrase/recombinase XerD [Neisseria meningitidis MC58] gi|34223072|sp|Q9K068|XERD_NEIMB RecName: Full=Tyrosine recombinase xerD gi|7225980|gb|AAF41164.1| integrase/recombinase XerD [Neisseria meningitidis MC58] gi|325133733|gb|EGC56389.1| tyrosine recombinase XerD [Neisseria meningitidis M13399] gi|325140092|gb|EGC62621.1| tyrosine recombinase XerD [Neisseria meningitidis CU385] Length = 291 Score = 126 bits (315), Expect = 7e-27, Method: Composition-based stats. Identities = 43/273 (15%), Positives = 96/273 (35%), Gaps = 19/273 (6%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTP 130 LI ++ L+ N+ + ++I R+ + + + V Sbjct: 5 LIDRLLETLWLDRRLSQNTLNGYRRDLEKIARRLSQSGRMLKDADEADLAAAVYVDGEQR 64 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---- 186 SS + L++ + L+ W R+ NP ++ PK T++ + + + Sbjct: 65 SSQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLLAAPDTDT 124 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-----------IKTQKTGTIITV 235 G + + E + +GLR S++ ++ + + + V Sbjct: 125 PHGLRDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITALGKGDKQRMVPMGQESAYWV 184 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294 E + L + + F++ K ++ + K A++AG+ + S H +R A Sbjct: 185 ERYYTEARPLLLKGRNCDALFVSQKKTGISRQLAWMIVKEYASQAGIGHISPHSLRHAFA 244 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGAD 327 T G + G ++ + YT A+ Sbjct: 245 THLVRHGLDLRVVQDMLGHADLNTTQIYTHVAN 277 >gi|295093615|emb|CBK82706.1| Site-specific recombinase XerD [Coprococcus sp. ART55/1] Length = 306 Score = 126 bits (315), Expect = 7e-27, Method: Composition-based stats. Identities = 38/292 (13%), Positives = 85/292 (29%), Gaps = 28/292 (9%) Query: 74 LISEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTP 130 LI Y + L + +++ Q D ++T + + K+ P Sbjct: 7 LIKNYLEYCGKQKCLDEKTLKAYKIDLKQFSDYLCSSDITNVSTSILEDYIGELHNKYKP 66 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR--------------PWTK 176 + + + S + F + +E + NP ++ R+ + + + Sbjct: 67 KTVKRKIASAKAFFHYLEYKEILDRNPFNKLQIKFREPVILPKTIPLRTVETILSTIYEQ 126 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--TGTIIT 234 + + + E L +G+R S+ C V + SI Sbjct: 127 LNCAKTIYQRRNSLRDAAVIELLFATGMRISELCALKVNDINLYDGSILIYGKGDKERRL 186 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKM-------NATQFSIWFKAKATKAGVNK--S 285 + +L + + +N + A ++ + Sbjct: 187 QIGNPSVISILNKYEVDFHSEIMNCNHFFANQSGRSLTDQTVRRMINKYTALAAIDLHIT 246 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 H R AT +A + G +++ E YT A + I ++ Sbjct: 247 PHMFRHTFATSLLEADVDIRYIQEMLGHSSINITEIYTHVALAKQRSILATK 298 >gi|227875332|ref|ZP_03993474.1| tyrosine recombinase [Mobiluncus mulieris ATCC 35243] gi|227844237|gb|EEJ54404.1| tyrosine recombinase [Mobiluncus mulieris ATCC 35243] Length = 319 Score = 126 bits (315), Expect = 7e-27, Method: Composition-based stats. Identities = 44/285 (15%), Positives = 91/285 (31%), Gaps = 32/285 (11%) Query: 85 GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHT--------PSSA 133 + ++ +++ + + G ++T + V + +S Sbjct: 28 RGASPHTIAAYQRDLQRYVAYLQILGRDTLAQVTEVDLEGFVRALGDGFASFPPLGSTSV 87 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-----WSE 188 + L + R ++ + N SV+ K + E+M+ + S Sbjct: 88 RRCLAAARSWHRYLFDSGSLGANVASSVKPAKLPRRLPETLSLEEMEALLAAASSPGDSN 147 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL---- 244 + R EFL SG R S++ + + + G + + Sbjct: 148 SLRDRALLEFLYASGARISEAMNLVLDDIDFETEPALVRLFGKGRKERISMLGHQACQAL 207 Query: 245 ----------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292 LA + F+N + M+ +A A +A +++ H +R Sbjct: 208 QAYLVRVRPTLAEKGQSRGRVFLNTYGKPMSRQTAWAIIQAAAKRAQIDRPVHPHTLRHC 267 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 AT GA + G +V E YTK + ++ L + S Sbjct: 268 FATHLLQGGADIRVVQELLGHASVTTTEIYTKVSKQMLLEVYASA 312 >gi|224537800|ref|ZP_03678339.1| hypothetical protein BACCELL_02683 [Bacteroides cellulosilyticus DSM 14838] gi|224520620|gb|EEF89725.1| hypothetical protein BACCELL_02683 [Bacteroides cellulosilyticus DSM 14838] Length = 294 Score = 126 bits (315), Expect = 7e-27, Method: Composition-based stats. Identities = 39/277 (14%), Positives = 89/277 (32%), Gaps = 24/277 (8%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGVESRK 127 WL + + + + + + S+ Q + GD + + +R + S Sbjct: 2 WLTNSFLDYLQYERNYSEETIKSYREDLCQFEKFAREEIGDSALSGVKAELVREWIVSLM 61 Query: 128 HTPSS---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + + L+S+R +K+ +R+ V +NP + PK K + +M + Sbjct: 62 DKGYTSTSINRKLSSLRSFYKFLLRKGEVCVNPLQKITGPKNKKPLPTFLRESEMDKLLD 121 Query: 185 FW-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELP 238 +G + + E +G+R S+ +++ + T K + Sbjct: 122 EVDFGEGFKGCRDHMIIEMFYATGMRLSELIGLDDKNVDFSSLLIKVTGKRNKQRLIPFG 181 Query: 239 DGFMKLLAMTPIGKETFFINN---DKQKMNATQFSIWFKAKATKAGV-------NKSAHG 288 + + + + + + S K + +S H Sbjct: 182 EELKNAMIEYVNVRNEIVQARTDAFFVRESGERLSRSIVENLVKRNLSKVVTLKKRSPHV 241 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 +R AT + A + G +++ E YT Sbjct: 242 LRHTFATTMLNHDAELGAIKELLGHESLATTEVYTHT 278 >gi|254504224|ref|ZP_05116375.1| site-specific recombinase, phage integrase family protein [Labrenzia alexandrii DFL-11] gi|222440295|gb|EEE46974.1| site-specific recombinase, phage integrase family protein [Labrenzia alexandrii DFL-11] Length = 317 Score = 126 bits (315), Expect = 7e-27, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 80/289 (27%), Gaps = 30/289 (10%) Query: 75 ISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIR---SG 122 I+++ L+ + I++E Q +R G D + R + Sbjct: 21 IAKWLDHLSDERRLSDKTLIAYERDLRQFLRFLTDHLGGAPGIKDIADLRPADFRGFLAQ 80 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ- 181 K S + L +R K+ R+ + +V P++ +P + +D Sbjct: 81 RRRNKVQSRSLARGLAGIRSFLKFLERRGEINAAASDAVRPPRQLRSLPKPVSAKDAIDI 140 Query: 182 ------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQKTGTII 233 ++ ++ L GLR S++ + K Sbjct: 141 TSGDLAMETEAWVEARNAAVLTLLYGCGLRISEALSLTGKMAPQPGTKTMRIIGKGRKER 200 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGVN--K 284 V + + +A + +N + G+ Sbjct: 201 IVPILPAVCEAVAHYVKLCPYAISPDGPLFLGARGGPLNPRMIQLSMAKLRGALGLPETA 260 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 + H +R AT G + G ++ + YT+ L Sbjct: 261 TPHALRHSFATHLLAGGGDLRTIQELLGHASLASTQIYTEIDSAHLLAA 309 >gi|256379436|ref|YP_003103096.1| tyrosine recombinase XerD [Actinosynnema mirum DSM 43827] gi|255923739|gb|ACU39250.1| tyrosine recombinase XerD [Actinosynnema mirum DSM 43827] Length = 299 Score = 126 bits (315), Expect = 7e-27, Method: Composition-based stats. Identities = 47/273 (17%), Positives = 88/273 (32%), Gaps = 21/273 (7%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKH 128 ++ Y A N+ S+ + + +T + + + Sbjct: 7 ADAVTAYLDHLAVERGAARNTLDSYARDLRRYLAHLESAGLGLDAVTEAVVGDFLAGLRE 66 Query: 129 TP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + SSA + L ++R L ++A R+ A +P V+ P + D+ + Sbjct: 67 SGLAASSAARTLVAVRGLHRFAHREGLTAADPAKDVQPPAAPRRLPKALPVADVLRLLDT 126 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGF 241 + R E L +G R S+ V + + K G V + Sbjct: 127 AGDTPAALRDRALLELLYSTGARISEVVGLDVDDVDAAERTALLDGKGGKQRVVPVGRPA 186 Query: 242 MKLLAMTPIGKETF---------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290 + + + F+N +++ K A +AGV S H +R Sbjct: 187 LAAVEAYLVRARPVLAKRGGPALFLNARGGRLSRQSAWQVLKTAAERAGVAAEVSPHTLR 246 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYT 323 AT +AGA + G +V + YT Sbjct: 247 HSFATHLLEAGADVRVVQELLGHASVTTTQVYT 279 >gi|56551494|ref|YP_162333.1| integrase family protein [Zymomonas mobilis subsp. mobilis ZM4] gi|56543068|gb|AAV89222.1| integrase family protein [Zymomonas mobilis subsp. mobilis ZM4] Length = 307 Score = 126 bits (315), Expect = 8e-27, Method: Composition-based stats. Identities = 42/294 (14%), Positives = 96/294 (32%), Gaps = 26/294 (8%) Query: 72 KWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 + LI + + + N+ +++ S ++ + + T GV + Sbjct: 14 ESLILRFLEMMAAESGSSPNTLMAYGSDLRLASQQLENGLVKADTDDLASLGVVWSDYAR 73 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE---------DMQQ 181 ++ + +++ +++ + + +P S+ + T + Sbjct: 74 NTVARKSAALKHFYRFLLEEGMRTDDPSSSLPHAGISRNLPKILTTVEVERLFVTLQQRY 133 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCR-AGVQHLQNNIFSIKTQKTGTIITVELPDG 240 ++ + E L SGLR S+ ++ F I K G V + D Sbjct: 134 ERAATPSTLRLIALVELLYGSGLRASELVSLPKQAFIRKQPFLILKGKGGRERLVPISDR 193 Query: 241 FMKLLAMTPIGKET---FFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSA 294 +A + + + K ++ + K A +A + + S H +R A Sbjct: 194 ATDAVAAWLVHVPEKSLWLFPSGKGHISRIRLYQLIKELAVEADLPRERVSPHVLRHAFA 253 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 T + GA L G + + YT + ++ +V+S P Sbjct: 254 THLLEGGADLRVLQLLLGHADISTTQIYTHVDSQ---------KLVELVNSRHP 298 >gi|199599532|ref|ZP_03212920.1| Integrase [Lactobacillus rhamnosus HN001] gi|199589573|gb|EDY97691.1| Integrase [Lactobacillus rhamnosus HN001] gi|259649723|dbj|BAI41885.1| integrase [Lactobacillus rhamnosus GG] Length = 298 Score = 126 bits (315), Expect = 8e-27, Method: Composition-based stats. Identities = 39/291 (13%), Positives = 86/291 (29%), Gaps = 29/291 (9%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-------FDYRKITTKHIRSGVES 125 EY + + ++ + + + + + + Sbjct: 5 AAFQEYLT--VERQYSPETVTAYLNDIQEFQAFLKANGGFTDFSKVDDLDVQTYLTDLNK 62 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT----KEDMQQ 181 + +S + ++S+R +++ VR + V NP VE K+ + + +E + Sbjct: 63 QALARTSIARKISSLRSFYRYLVRIDVVKRNPFELVELKKQHHHLPQFFYEAEIQELFKT 122 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDG 240 + + R E L +G+R S+ + + N + K V Sbjct: 123 VEGKTPLDQRNRALLEVLYGTGIRVSECANLTLNQVDFNTGLLLIHGKGNKDRYVPFGRY 182 Query: 241 FMKLLAMT------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 + L + F+N + + A + + N Sbjct: 183 AQRALQTYLKDGRQTLMNKRDVQHRFVFVNQYGRPITARGIEYILDQLIKQTSLIANIHP 242 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 H +R AT D GA + G ++ + YT L + + Sbjct: 243 HMLRHSFATHMLDHGADLRTVQELLGHASLSTTQIYTHVT-MAHLKNEYMK 292 >gi|57234018|ref|YP_181928.1| tyrosine recombinase XerD [Dehalococcoides ethenogenes 195] gi|57224466|gb|AAW39523.1| tyrosine recombinase XerD [Dehalococcoides ethenogenes 195] Length = 302 Score = 126 bits (315), Expect = 8e-27, Method: Composition-based stats. Identities = 34/273 (12%), Positives = 86/273 (31%), Gaps = 29/273 (10%) Query: 85 GSLAVNSRISFESYFDQIIRKS-------GDFD-YRKITTKHIRSGVESRKHTP---SSA 133 + N+ ++E+ Q++ + G + T + + + + K ++ Sbjct: 16 KGFSENTTEAYENDLRQMMTFADKEAAKSGKIPGWENFTRQTMLAYMLDLKERNYAITTV 75 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-----E 188 ++ + + + F + V + + NP ++ PK + ++ + E Sbjct: 76 VRKMAAAKSFFNFMVAEGKLKENPTENISTPKVGKPLPDAISISQVRALLNQPVKSGSSE 135 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAM 247 + + E L SG+R ++ V + ++ + + + + Sbjct: 136 AKRDKAMLELLYASGMRVTELVNLNVLDVDLKEGFVRCFGKGRKERMIPIYPQAAQSIQE 195 Query: 248 TPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSAT 295 F+N ++ K A +AG++ + H +R AT Sbjct: 196 YLTEIRPNLVRAETEKALFLNRRGDRLTRQGLWQILKGYAREAGLDDVVTPHTLRHSFAT 255 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADR 328 GA + G + + YT Sbjct: 256 HMLSGGADLRSVQELLGHANISTTQIYTHLTSE 288 >gi|161485706|ref|NP_643858.2| site-specific tyrosine recombinase XerD [Xanthomonas axonopodis pv. citri str. 306] Length = 323 Score = 126 bits (315), Expect = 8e-27, Method: Composition-based stats. Identities = 46/312 (14%), Positives = 98/312 (31%), Gaps = 37/312 (11%) Query: 46 AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK 105 A L P + ++ ++ + + +A + S+ + + R Sbjct: 7 AERRQLARHLPPVQPADASV-----IERFLDRFWAE---QGVARQTLESYRRDLEGLARW 58 Query: 106 S-----GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 G + ++P S + L+++R + +R + +P Sbjct: 59 RDGAGGGLLGIDRAALFDYLRWRTRANYSPRSTARLLSTLRAFYGLCLRDGARSDDPTAL 118 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQH 216 ++ P + T+ ++ + + + R E + +GLR S+ Sbjct: 119 IDPPHLPRSLPKALTESQIEALLAAPDLDTPAGLRDRAMLELMYAAGLRVSELVNLPAVG 178 Query: 217 LQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIG----------------KETFFINN 259 + ++ V L + L + FI+ Sbjct: 179 VNLRQGVLRVTGKGSKDRLVPLGEESQHWLERYLREARPLLAANKPVAAVDGQVPLFIDV 238 Query: 260 DKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTV 316 +Q ++ QF K A AG++ S HG+R AT + GA L G ++ Sbjct: 239 SRQPLSRQQFWALVKRYAAVAGIDPATVSPHGLRHSFATHLLNHGADLRALQMLLGHSSL 298 Query: 317 DQAETYTKGADR 328 + YT A + Sbjct: 299 STTQIYTLVARQ 310 >gi|283852933|ref|ZP_06370193.1| tyrosine recombinase XerD [Desulfovibrio sp. FW1012B] gi|283571691|gb|EFC19691.1| tyrosine recombinase XerD [Desulfovibrio sp. FW1012B] Length = 309 Score = 126 bits (315), Expect = 8e-27, Method: Composition-based stats. Identities = 45/281 (16%), Positives = 87/281 (30%), Gaps = 21/281 (7%) Query: 74 LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKHTP 130 + Y + LA +S ++ + + +T + + + Sbjct: 15 WVDRYLEHLIVAKGLAEHSIAAYSTDITSFLIFLNSHAAALETVTDDTLFLYLMHLRTRG 74 Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 S + L+++R F +A ++++ +P +E PK ++ED+ + Sbjct: 75 LQSRSLARHLSALRGFFAFAAAEKWLPESPAALIENPKLPRLLPDVLSREDVARLLDAPD 134 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAG-VQHLQNNIFSIKTQKTGTIITVELPDGFM 242 G + R E L +GLR S+ + K + Sbjct: 135 TATPLGYRDRTMLELLYAAGLRVSELVGLTLGDYDAQAGLLRVFGKGAKERLTPIHALAR 194 Query: 243 KLLAMTPIGKETFFINNDKQKM--------NATQFSIWFKAKATKAGV--NKSAHGVRKF 292 + L+ + F ++ + KA A AGV S H +R Sbjct: 195 EFLSTYILTMRGAFHPREQFIFLNRSGQGLSRQAVWKKIKAHALAAGVSTRISPHSLRHS 254 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 AT + GA + G + E YT L + Sbjct: 255 FATHLLEGGADLRTVQMLLGHADISATEIYTHVQAGRLLAV 295 >gi|323342009|ref|ZP_08082242.1| integrase/recombinase XerD [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464434|gb|EFY09627.1| integrase/recombinase XerD [Erysipelothrix rhusiopathiae ATCC 19414] Length = 304 Score = 126 bits (315), Expect = 8e-27, Method: Composition-based stats. Identities = 37/277 (13%), Positives = 84/277 (30%), Gaps = 23/277 (8%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI---TTKHIRSGVESRK--HTPSS 132 Y + A + S+ + +Q I + + IR ++ K + S+ Sbjct: 11 YLQFIDPK--AALTVASYRNDLNQYIEYLEHESVSSLESVDAEVIRKYIDDIKNDYAAST 68 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW---TKEDMQQFKSFWSEG 189 + +R ++ + + +P V + T T + F + Sbjct: 69 IQHKIVVIRQFHQYLLNSGQLQHDPTAFVSLKNKGTRLPTIVSDDTIRKLFSFDRVTGKD 128 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMT 248 L GLR S+ + + ++ K + L + L+ Sbjct: 129 FMDYAILLLLYRCGLRVSECVHLEFSQVYLDQKWLRILGKGNKERMIPLSIDAIDGLSEY 188 Query: 249 PIGKETFFINNDKQKM---------NATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297 ++ +++ + K++ + G+ SAH +R AT Sbjct: 189 INIIRPQWMIQPTEQIFINAKGKGISRQYIDSMIKSRCKEMGILTPISAHTLRHSFATAI 248 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334 D G + G + + + YT ++ L + Sbjct: 249 LDTGVDLRIIQELLGHQDISTTQIYTH-VNKKTLKRE 284 >gi|284991421|ref|YP_003409975.1| tyrosine recombinase XerD [Geodermatophilus obscurus DSM 43160] gi|284064666|gb|ADB75604.1| tyrosine recombinase XerD [Geodermatophilus obscurus DSM 43160] Length = 315 Score = 126 bits (315), Expect = 8e-27, Method: Composition-based stats. Identities = 48/302 (15%), Positives = 97/302 (32%), Gaps = 37/302 (12%) Query: 66 KKPTT--LKWLISEYRKSAHW-GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHI 119 PTT + +++ Y LA N+ S+ + + +G ++ + Sbjct: 2 SAPTTSAVDRVVTGYLDHLTVERGLAANTISSYRRDLRRYTEFLDAAGVRGLGEVAESDV 61 Query: 120 RSGVESRKH--------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 + + + + +SA + + ++R L ++A+ V + V P Sbjct: 62 AGFLAALRQGDDDHPPLSATSAARAVVAVRGLHRFALLDGLVPDDVAHEVRPPSPARRLP 121 Query: 172 RPWTKEDMQQFKSF-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK- 225 + E + G + R E L +G R S++ V L ++ Sbjct: 122 KAIPVESVVALIEAAGALEGPRGLRDRALLELLYGTGARISEAVGLAVDDLDRGQSVVRL 181 Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--------------NATQFSI 271 K G V + ++ + + + + + Sbjct: 182 AGKGGKQRIVPVGSYALRAVEDYLVRARPALAAAGRGGVRGGALFLNARGGSLSRQSAWA 241 Query: 272 WFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT-KGADR 328 + A +AG+ S H +R AT D GA + G +V + YT DR Sbjct: 242 ILRTAAERAGLTAEVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQVYTLVTVDR 301 Query: 329 IR 330 +R Sbjct: 302 LR 303 >gi|270264257|ref|ZP_06192524.1| site-specific tyrosine recombinase XerC [Serratia odorifera 4Rx13] gi|270041906|gb|EFA15003.1| site-specific tyrosine recombinase XerC [Serratia odorifera 4Rx13] Length = 303 Score = 126 bits (315), Expect = 8e-27, Method: Composition-based stats. Identities = 41/283 (14%), Positives = 93/283 (32%), Gaps = 21/283 (7%) Query: 70 TLKWLISEYRKSAHW-GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVES 125 +L+ + + + L+ +++S+ + ++ G ++ + +R Sbjct: 7 SLQQPVDAFLRYLKVERQLSPLTQLSYSRQLQALMALAQEMGVTEWPALDAAKVRMLAAR 66 Query: 126 RKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 K SS L+++R W V Q + NP + P+ + +++ Q Sbjct: 67 SKRAGLQSSSLALRLSALRSFLDWQVSQGALIANPAKGIRTPRSGRHLPKNIDVDEINQL 126 Query: 183 KSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELP 238 + + R E + +GLR S+ +H+ K + + Sbjct: 127 LNIDLNDPLAVRDRAMLEVMYGAGLRLSELVGLDCRHVDLAAGDIWVLGKGSKERKLPIG 186 Query: 239 DGFMKLLAMTPIGKE-------TFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289 + L ++ F++N ++++ F K GV + H + Sbjct: 187 RTAVTWLEHWLAMRDLFGPADDAMFLSNQGKRISTRNVQKRFAEWGVKQGVNSHIHPHKL 246 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 R AT ++ + G + + YT D L Sbjct: 247 RHSFATHMLESSGDLRAVQELLGHANLTTTQIYTH-LDFQHLA 288 >gi|258539622|ref|YP_003174121.1| tyrosine recombinase xerD [Lactobacillus rhamnosus Lc 705] gi|257151298|emb|CAR90270.1| Tyrosine recombinase xerD [Lactobacillus rhamnosus Lc 705] Length = 299 Score = 126 bits (315), Expect = 8e-27, Method: Composition-based stats. Identities = 39/291 (13%), Positives = 85/291 (29%), Gaps = 29/291 (9%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-------FDYRKITTKHIRSGVES 125 EY + + ++ + + + + + + Sbjct: 6 AAFQEYLT--VERQYSPETVTAYLNDIQEFQAFLKANGGFTDFSKVDDLDVQTYLTDLNK 63 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT----KEDMQQ 181 + +S + ++S+R +++ VR + V NP VE K+ + + +E + Sbjct: 64 QALARTSIARKISSLRSFYRYLVRIDVVKRNPFELVELKKQHHHLPQFFYEAEIQELFKT 123 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDG 240 + + R E L +G+R S+ + + N + K V Sbjct: 124 VEGETPLDQRNRALLEVLYGTGIRVSECANLTLNQVDFNTGLLLIHGKGNKDRYVPFGRY 183 Query: 241 FMKLLA------------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 + L F+N + + A + + N Sbjct: 184 AQRALQTYLKDGRQTLMNKHDAQHRFVFVNQYGRPITARGIEYILDQLIKQTSLTANIHP 243 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 H +R AT D GA + G ++ + YT L + + Sbjct: 244 HMLRHSFATHMLDHGADLRTVQELLGHASLSTTQIYTHVT-MAHLKNEYMK 293 >gi|255029340|ref|ZP_05301291.1| hypothetical protein LmonL_09813 [Listeria monocytogenes LO28] Length = 450 Score = 126 bits (315), Expect = 8e-27, Method: Composition-based stats. Identities = 37/278 (13%), Positives = 88/278 (31%), Gaps = 27/278 (9%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHIRSGVESRKHTP 130 +Y S + +VN+ ++E+ R + + + + ++ + + Sbjct: 13 DYLHSE--RNYSVNTSTAYENDLLDFRRFLNEQAITTYQQVTFLDVRIYLTELKQKSFSR 70 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG- 189 ++ + ++S+R + + +R+ + NP V K + + + E+M+ E Sbjct: 71 TTVARKISSLRSFYTFLLRENVINENPFTYVSHAKNQLRLPKFFYSEEMEALFQVVYEDN 130 Query: 190 ----SQPRLAFEFLLYSGLRCSDSCRAG-VQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 + R+ E L +G+R S+ + + K V Sbjct: 131 ETLTLRDRVLLEVLYGTGIRVSECAGILLPDLDTSYQAILIRGKGNKERYVPFGAYAEDA 190 Query: 245 LAMTPIGKETFF-----------INNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRK 291 + + +N+ + +KA + H +R Sbjct: 191 ITDYLPERVNLMSRYKKSHDALLVNHYGDPLTTRGIRYCLTKIISKASLTRKIHPHMLRH 250 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + GA + G ++ + YT R Sbjct: 251 TFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKRA 288 >gi|254561653|ref|YP_003068748.1| tyrosine recombinase xerD [Methylobacterium extorquens DM4] gi|254268931|emb|CAX24892.1| Tyrosine recombinase xerD [Methylobacterium extorquens DM4] Length = 328 Score = 126 bits (315), Expect = 8e-27, Method: Composition-based stats. Identities = 45/273 (16%), Positives = 86/273 (31%), Gaps = 28/273 (10%) Query: 85 GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTS 139 A N+ ++ D + G D + +R+ + S + SSA + L+ Sbjct: 27 RGAAANTLAAYRRDLDDYLGYLAQGGIDPEEAQADQVRAYIASLEPRGLKASSAARRLSC 86 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----------- 188 +R ++ + Y +P V P+R + + ++ + + E Sbjct: 87 IRGFHRFLYAEGYSETDPTAPVAAPRRAKGLPKVLSVAEVDRLLATARERVEAAGDDRAE 146 Query: 189 ---GSQPRLAFEFLLYSGLRCSDSCR-AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 ++ E L +GLR S+ + + K G V L D + Sbjct: 147 ARSAARMLCLLELLYATGLRVSELVALPRSAAATRERYLVVKGKGGRERLVPLTDLAREA 206 Query: 245 LAMTPIG-----KETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATI 296 + F ++ + F+ K A AG+ S H +R A+ Sbjct: 207 MRTHVAYLTAEGAWLFPAESESGHLTRQAFARDLKTAAAAAGLRTDRVSPHVLRHAFASH 266 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRI 329 GA + G + + YT D Sbjct: 267 LLQNGADLRIVQELLGHADISTTQIYTHVLDER 299 >gi|160934248|ref|ZP_02081635.1| hypothetical protein CLOLEP_03119 [Clostridium leptum DSM 753] gi|156866921|gb|EDO60293.1| hypothetical protein CLOLEP_03119 [Clostridium leptum DSM 753] Length = 309 Score = 125 bits (314), Expect = 8e-27, Method: Composition-based stats. Identities = 35/279 (12%), Positives = 94/279 (33%), Gaps = 26/279 (9%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGVE---SRKH 128 +Y K+ ++ N+ S+ + + +T ++ +E Sbjct: 18 FQDYLKNQKC--VSSNTLQSYVRDIEHFSIYLAAENIDNPASVTADDLQHYIESLEKLGR 75 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---- 184 + S+ + + S+R +++ + + NP ++R K + + T E+++ Sbjct: 76 SASTVTRNIASIRCFYQYLILINIASENPAKEIKREKTEKKPPSILTGEEIRLLLDQPNV 135 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 +G + + E L +G+R S+ +Q + + ++ + + + + Sbjct: 136 MDPKGCRDKAMIELLYATGIRVSELIDLNLQDINLKTGMLHCRRPKSDRIIPIYAEAVAS 195 Query: 245 LAMTPIGKETFFINN------------DKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290 L+ I+ + ++ F K A +A + + + H +R Sbjct: 196 LSDYISRVRRIIIDPVGKDGQALFVNLNGHRLTRQGFWKIIKGYAAQARITKDITPHTLR 255 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 A GA ++ G + + Y + Sbjct: 256 HSFALHLLQNGADLKDIQEMLGHADIASTQVYANLLNNR 294 >gi|84393557|ref|ZP_00992311.1| tyrosine recombinase [Vibrio splendidus 12B01] gi|84375836|gb|EAP92729.1| tyrosine recombinase [Vibrio splendidus 12B01] Length = 310 Score = 125 bits (314), Expect = 8e-27, Method: Composition-based stats. Identities = 39/276 (14%), Positives = 94/276 (34%), Gaps = 23/276 (8%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRS---GVESRKHTP 130 EY +S L+++++ +++ + + G D+ ++ +R Sbjct: 22 EYLRSE--KGLSLHTQRNYKQQLETMAAHLVTLGLKDWGQVDAAWVRQLASKGMREGMKA 79 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 SS L+S+R F + V + + NP V P+++ + +++ Q + Sbjct: 80 SSIATRLSSLRSFFDFLVLRGEMTANPAKGVSAPRKQRPLPKNLDVDEVGQLLDVNEDDP 139 Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLA 246 + R E + +GLR ++ ++ + I+ + + Sbjct: 140 LSIRDRAMMEVMYGAGLRLAELVGINLKDVLGRQGEIRVIGKGDKERKAPFSGLAKEWVD 199 Query: 247 MT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296 G++ F++ +++ + K V + S H +R AT Sbjct: 200 KWLKVRGDLASPGEKALFVSKLGTRISHRSVQKRMEEWGKKQSVASHISPHKLRHSFATH 259 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 ++ + G + + + YT D L Sbjct: 260 VLESSQNLRAVQELLGHENISTTQIYTH-LDFQHLA 294 >gi|330991502|ref|ZP_08315453.1| Tyrosine recombinase xerC [Gluconacetobacter sp. SXCC-1] gi|329761521|gb|EGG78014.1| Tyrosine recombinase xerC [Gluconacetobacter sp. SXCC-1] Length = 390 Score = 125 bits (314), Expect = 8e-27, Method: Composition-based stats. Identities = 53/350 (15%), Positives = 103/350 (29%), Gaps = 20/350 (5%) Query: 14 ERTRHGKIIYYFRKGHGRRIRL------PYPHESTFIPAYM---SALTGSTPKREYINSP 64 G+ +Y G R+R P + A + S Sbjct: 34 RVWPSGRKVYVIHYRSGGRLRRYTIGQHGSPWTADLARDEAIRILARVHTGENPADKRSD 93 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSGV 123 +K T+ + L +R + + I K G + ++ + Sbjct: 94 DRKAMTVTSFSRRFLDEYVDVHLKPRTRGEYRRSVELFIVPKFGSWRMADLSRAEVVEFH 153 Query: 124 ESRKHTPSSAIQFLTSMRVLFK----WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 S +H P A + L + +F W +RQ+ V + R +R+ + + Sbjct: 154 GSFRHIPYQANRTLGVLSKMFSLADLWGIRQDGVNPCRGVKRYREERRERFLTREEYARL 213 Query: 180 QQFKSFWSEGSQPRL-AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVE 236 +E A L +G R + H+ N ++ + Sbjct: 214 GNSLDEATEDMPEAARAIRLLALTGCRLREIQTLQWTHVWLNEAELRLPDSKTGAKTVQL 273 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSAT 295 L A + + I K T ++ AG++ H +R A+ Sbjct: 274 GTAAVDVLKATPRLPDNPYVITGRKAGEYLTDLQKPWRRIRKAAGLDGVRLHDLRHSFAS 333 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK--GADRIRLGIKNSRRISSVV 343 + + GA + G + Y + R + ++RISS + Sbjct: 334 DALEMGADLTMIGRMLGHSDIKTTSRYAHLKRENVKRSTDQVAQRISSAL 383 >gi|292493801|ref|YP_003529240.1| tyrosine recombinase XerC [Nitrosococcus halophilus Nc4] gi|291582396|gb|ADE16853.1| tyrosine recombinase XerC [Nitrosococcus halophilus Nc4] Length = 300 Score = 125 bits (314), Expect = 8e-27, Method: Composition-based stats. Identities = 37/281 (13%), Positives = 88/281 (31%), Gaps = 22/281 (7%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRS---GVES 125 I + + L+ + +S+ + + G + ++ + +R+ Sbjct: 7 AWIQRFLTHLQYERGLSGQTIVSYRRDLAKVATFCDRHGIQGWGELDAQKVRALVAAHHQ 66 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + + S + L+++R + R+ V +P V PK K + + + Q Sbjct: 67 KGLSGRSIQRLLSALRSFSTYLQREGVVENHPAQGVSAPKGKRQLPHALDVDQVAQLLKG 126 Query: 186 WSEG---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGF 241 + + E SGLR ++ ++ L ++ G V L Sbjct: 127 EPSDQLLLRDQAMLELFYSSGLRLAELVGLNLRELDLEAALVRVVGKGAKTREVPLGRQA 186 Query: 242 MKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291 L +E + N ++++ + + G++ H +R Sbjct: 187 KAALLAWLPVREAWTPRNQDAVFVSRQGRRLSPRGVQKRLRIWGLRQGLDVAIHPHRLRH 246 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 A+ ++ + G + + YT D L Sbjct: 247 AFASHLLESSGDLRAVQELLGHADISTTQIYTH-LDFQHLA 286 >gi|237727927|ref|ZP_04558408.1| site-specific tyrosine recombinase XerC [Citrobacter sp. 30_2] gi|226910376|gb|EEH96294.1| site-specific tyrosine recombinase XerC [Citrobacter sp. 30_2] Length = 300 Score = 125 bits (314), Expect = 8e-27, Method: Composition-based stats. Identities = 47/282 (16%), Positives = 98/282 (34%), Gaps = 21/282 (7%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSG---V 123 L + + + L+ + ++++ D II +G+ +++ +RS Sbjct: 6 LSQDVVRFLRYLGVERQLSPITLLNYQRQLDAIIALAGETGLQSWQQCDAAMVRSFAVRS 65 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + P+S L+++R F W V Q + NP SV PK + +D+ + Sbjct: 66 RRKGLGPASLALRLSALRSFFDWLVNQGELKANPAKSVSAPKAPRHLPKNIDVDDVNRLL 125 Query: 184 SFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD 239 + R E + +GLR S+ ++HL + K + + Sbjct: 126 DIDLNDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLPIGR 185 Query: 240 GFMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVR 290 + + + F ++D ++++A F K G+ + H +R Sbjct: 186 NAVAWIEHWLDLRGLFGSDDDALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLR 245 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 AT ++ + G + + YT D L Sbjct: 246 HSFATHMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 286 >gi|86148174|ref|ZP_01066472.1| tyrosine recombinase [Vibrio sp. MED222] gi|85834021|gb|EAQ52181.1| tyrosine recombinase [Vibrio sp. MED222] Length = 310 Score = 125 bits (314), Expect = 8e-27, Method: Composition-based stats. Identities = 39/276 (14%), Positives = 93/276 (33%), Gaps = 23/276 (8%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRS---GVESRKHTP 130 EY +S L+++++ +++ + + G D+ ++ +R Sbjct: 22 EYLRSE--KGLSLHTQRNYKQQLETMAAHLVTLGLKDWSQVDAAWVRQLASKGMREGMKA 79 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 SS L+S+R F + V + + NP V P+++ + +++ Q + Sbjct: 80 SSIATRLSSLRSFFDFLVLRGEMTANPAKGVSAPRKQRPLPKNLDVDEVGQLLDVNEDDP 139 Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLA 246 + R E + +GLR ++ ++ + I+ + + Sbjct: 140 LSIRDRAMMEVMYGAGLRLAELVGINLKDVLGRQGEIRVIGKGDKERKAPFSGLAKEWVE 199 Query: 247 MT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296 G+ F++ +++ + K V + S H +R AT Sbjct: 200 KWLKVRGELASPGEPALFVSKLGTRISHRSVQKRMEEWGKKQSVASHISPHKLRHSFATH 259 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 ++ + G + + + YT D L Sbjct: 260 VLESSQNLRAVQELLGHENISTTQVYTH-LDFQHLA 294 >gi|157829099|ref|YP_001495341.1| site-specific tyrosine recombinase XerC [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933823|ref|YP_001650612.1| site-specific tyrosine recombinase XerC [Rickettsia rickettsii str. Iowa] gi|166918901|sp|A8GTV8|XERC_RICRS RecName: Full=Tyrosine recombinase xerC gi|189030082|sp|B0BVE6|XERC_RICRO RecName: Full=Tyrosine recombinase xerC gi|157801580|gb|ABV76833.1| site-specific tyrosine recombinase XerC [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908910|gb|ABY73206.1| integrase/recombinase (XerC/CodV family) [Rickettsia rickettsii str. Iowa] Length = 305 Score = 125 bits (314), Expect = 8e-27, Method: Composition-based stats. Identities = 47/287 (16%), Positives = 101/287 (35%), Gaps = 28/287 (9%) Query: 68 PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRS 121 T+++ LI++++K + + ++ IS+ + + I T IR Sbjct: 3 DTSIQALINKWQKYLVLQRNYSNHTVISYNNDLKHFLEFMNYYNSELVTINHIKTADIRL 62 Query: 122 GVESRKHT------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 SS + L++++ +++ + + + S++ PK+ + + Sbjct: 63 IRSWLAKRNCDNFAASSISRGLSAVKNFYRFLEKTTQLNSHIIFSIKSPKKTKLLPKALS 122 Query: 176 KEDMQQFKSFW-------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228 ++D+ + + + SGLR S++ HLQN F K Sbjct: 123 EDDVVISLEHIEEYGNIKWVELRNKALLVLIYASGLRISEALSITKLHLQNLEFIRIIGK 182 Query: 229 TGTIITVEL-------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 + ++++L E F +K+ F+ G Sbjct: 183 GSKERIIPWLPIAKNLITQYLEILPYKLGDNEPIFRGKQGKKLQPPVFNRELIKLKHFYG 242 Query: 282 VN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 + +AH R A+ + GA L A G K++ + YTK + Sbjct: 243 LPQHLTAHSFRHSFASHLLEHGADLRSLQALLGHKSLSTTQNYTKTS 289 >gi|70726663|ref|YP_253577.1| hypothetical protein SH1662 [Staphylococcus haemolyticus JCSC1435] gi|82582336|sp|Q4L5V4|XERC_STAHJ RecName: Full=Tyrosine recombinase xerC gi|68447387|dbj|BAE04971.1| xerC [Staphylococcus haemolyticus JCSC1435] Length = 297 Score = 125 bits (314), Expect = 8e-27, Method: Composition-based stats. Identities = 33/265 (12%), Positives = 91/265 (34%), Gaps = 20/265 (7%) Query: 85 GSLAVNSRISFESYF---DQIIRK--SGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 + + ++ S+ + + + + ++ S + S+ ++ + +++ Sbjct: 16 RNFSAHTLKSYHDDLVQFNHFLEQELINLRTFEYKDARNYLSYLYSQNLKRTTVSRKIST 75 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 +R +++ + Q+ INP + + PK++ + + +E+M+ +G + R+ Sbjct: 76 LRTFYEFWMTQDETIINPFVQLVHPKKENYLPQFFYEEEMEALFETVAKDTKKGLRDRVI 135 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254 E L +G+R S+ ++ + + K V + + + + Sbjct: 136 LELLYATGIRVSELVNIQLKDIDMSLPGVKVLGKGNKERFVPFGEFCRQSIEQYLREFKP 195 Query: 255 FFINNDKQ--------KMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGATA 304 + + AGV H +R AT + GA Sbjct: 196 IQHTKHSFLLVNMNGAPITERGVRYVLNDVVKRTAGVTEIHPHKLRHTFATHLLNQGADL 255 Query: 305 HELMATYGWKTVDQAETYTKGADRI 329 + + G + YT +++ Sbjct: 256 RTVQSLLGHVNLSTTGRYTHVSNQQ 280 >gi|258508408|ref|YP_003171159.1| tyrosine recombinase XerD [Lactobacillus rhamnosus GG] gi|257148335|emb|CAR87308.1| Tyrosine recombinase xerD [Lactobacillus rhamnosus GG] Length = 299 Score = 125 bits (314), Expect = 8e-27, Method: Composition-based stats. Identities = 39/291 (13%), Positives = 86/291 (29%), Gaps = 29/291 (9%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-------FDYRKITTKHIRSGVES 125 EY + + ++ + + + + + + Sbjct: 6 AAFQEYLT--VERQYSPETVTAYLNDIQEFQAFLKANGGFTDFSKVDDLDVQTYLTDLNK 63 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT----KEDMQQ 181 + +S + ++S+R +++ VR + V NP VE K+ + + +E + Sbjct: 64 QALARTSIARKISSLRSFYRYLVRIDVVKRNPFELVELKKQHHHLPQFFYEAEIQELFKT 123 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDG 240 + + R E L +G+R S+ + + N + K V Sbjct: 124 VEGKTPLDQRNRALLEVLYGTGIRVSECANLTLNQVDFNTGLLLIHGKGNKDRYVPFGRY 183 Query: 241 FMKLLAMT------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 + L + F+N + + A + + N Sbjct: 184 AQRALQTYLKDGRQTLMNKRDVQHRFVFVNQYGRPITARGIEYILDQLIKQTSLIANIHP 243 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 H +R AT D GA + G ++ + YT L + + Sbjct: 244 HMLRHSFATHMLDHGADLRTVQELLGHASLSTTQIYTHVT-MAHLKNEYMK 293 >gi|294085482|ref|YP_003552242.1| tyrosine recombinase XerD [Candidatus Puniceispirillum marinum IMCC1322] gi|292665057|gb|ADE40158.1| tyrosine recombinase XerD [Candidatus Puniceispirillum marinum IMCC1322] Length = 311 Score = 125 bits (314), Expect = 8e-27, Method: Composition-based stats. Identities = 50/300 (16%), Positives = 94/300 (31%), Gaps = 37/300 (12%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQII-------RKSGDFDYRKITTKHIRSGVESR 126 I + ++ + A N+ ++ + + + + + + Sbjct: 15 IEGFLQALSADRASAANTLAAYRRDLNDVATIMQGIDKTLHNATVDDLRQAIHAWHLRRL 74 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + S + L+++R W V NP ++ P + T+ ++ Sbjct: 75 --SARSVARRLSALRQFMGWLVEDNIRIDNPMRWIDSPSVPAPAPKSLTEAEVIALLKAA 132 Query: 187 SE------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD 239 + + R E +GLR S+ + V + N S+ T K G V L D Sbjct: 133 NALEPEAAAVRARAILEIFYATGLRVSEVVKLQVAQFRRNPESLLVTGKGGRERVVPLGD 192 Query: 240 GFMKLLAMTPIGKETFF--------INNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 + ++ M QF+ K+ A AG+N S H Sbjct: 193 AAKTAVQYWIEIRDRHAAALMSDYLFPMGDGPMTRHQFASLLKSLALAAGINPDRVSPHV 252 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 +R AT + GA L G + + YT R++ +V S P Sbjct: 253 LRHSFATHMLNRGADLRSLQTLLGHADITTTQIYT---------ATRPDRLAGLVASAHP 303 >gi|253690334|ref|YP_003019524.1| tyrosine recombinase XerC [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756912|gb|ACT14988.1| tyrosine recombinase XerC [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 311 Score = 125 bits (314), Expect = 8e-27, Method: Composition-based stats. Identities = 47/295 (15%), Positives = 94/295 (31%), Gaps = 22/295 (7%) Query: 59 EYINSPRKKPTTLKWL-ISEYRKSAHW-GSLAVNSRISFESYFDQI---IRKSGDFDYRK 113 SP ++L + + + L+ ++ S+ I + +G D+RK Sbjct: 3 RQPASPEAPSSSLLQADVDAFLRYLKVERQLSPLTQTSYLRQLSAIITILSAAGVVDWRK 62 Query: 114 ITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170 + +RS V K S L+++R W V + + NP + P+ Sbjct: 63 LDAAGVRSVVSRSKRDGLHSGSLALRLSALRSFLDWMVSRGVLTANPAKGISTPRAGRPL 122 Query: 171 IRPWT---KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKT 226 + + + + R E + +GLR ++ QH+ + Sbjct: 123 PKNMDVDEMDRLLDIDLDDPLAVRDRTMLEVMYGAGLRLAELVGMDCQHIDLASGEVWVM 182 Query: 227 QKTGTIITVELPDGFMKLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATK 279 K + + + L + FI+N ++++ F K Sbjct: 183 GKGSKERKLPIGKTAVTWLERWLALRELFGPQDDAVFISNQGRRISMRNVQKRFAEWGIK 242 Query: 280 AGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 GV + H +R AT ++ + G + + YT D L Sbjct: 243 QGVNSHVHPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTH-LDFQHLA 296 >gi|258405018|ref|YP_003197760.1| integrase family protein [Desulfohalobium retbaense DSM 5692] gi|257797245|gb|ACV68182.1| integrase family protein [Desulfohalobium retbaense DSM 5692] Length = 306 Score = 125 bits (314), Expect = 8e-27, Method: Composition-based stats. Identities = 41/279 (14%), Positives = 90/279 (32%), Gaps = 25/279 (8%) Query: 71 LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI--------RS 121 L + + + + ++ +Q + I + Sbjct: 7 LPETVETFLAYLDGQRGASPATVRAYRRDLEQFEAVLRRRGLDMDRPQQIDREAVQGFAA 66 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED--- 178 + + SS + L+++R F++ +++++V NP SV PK++ + T E Sbjct: 67 DLHRQGLRRSSVSRKLSAVRRFFRFCLQRQWVDTNPAHSVANPKQEVRHPKVLTVEQALE 126 Query: 179 -MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-----TI 232 M +G + E L SGLR S++ + + ++ ++ G Sbjct: 127 LMDTHLPNDPKGCRDLALAELLYGSGLRISEALQLDIDDIEPGRGVVRVVGKGGKERLAP 186 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDK-----QKMNATQFSIWFKAKATKAGVN--KS 285 +T + L +++ + + + AG+ S Sbjct: 187 LTEPGQSRLRRYLEQRRAFVVDPQEPALFLGLRGKRLQRREANRILARLSQTAGLPEEIS 246 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT +GA + G + + YT Sbjct: 247 PHVLRHSFATHLLRSGADLRSVQELLGHSRLSTTQRYTH 285 >gi|163851935|ref|YP_001639978.1| tyrosine recombinase XerD [Methylobacterium extorquens PA1] gi|163663540|gb|ABY30907.1| tyrosine recombinase XerD [Methylobacterium extorquens PA1] Length = 328 Score = 125 bits (314), Expect = 8e-27, Method: Composition-based stats. Identities = 45/273 (16%), Positives = 87/273 (31%), Gaps = 28/273 (10%) Query: 85 GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTS 139 A N+ ++ D + G D + + +R+ + S + SSA + L+ Sbjct: 27 RGAAANTLAAYRRDLDDYLGYLAQGGIDPEEAQAEQVRAYIASLEPRGLKASSAARRLSC 86 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG---------- 189 +R ++ + Y +P V P+R + + ++ + + E Sbjct: 87 IRGFHRFLYAEGYAETDPTAPVAAPRRAKGLPKVLSVAEVDRLLATARERVEAAGDDRAE 146 Query: 190 ----SQPRLAFEFLLYSGLRCSDSCR-AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 ++ E L +GLR S+ + + K G V L D + Sbjct: 147 ARAAARMLCLLELLYATGLRVSELVALPRSAAATRERYLVVKGKGGRERLVPLTDLAREA 206 Query: 245 LAMTPIG-----KETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATI 296 + F ++ + F+ K A AG+ S H +R A+ Sbjct: 207 MRTHVAHLTAEGSWLFPAESESGHLTRQAFARDLKTAAAAAGLRTDRVSPHVLRHAFASH 266 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRI 329 GA + G + + YT D Sbjct: 267 LLQNGADLRIVQELLGHADISTTQIYTHVLDER 299 >gi|172061520|ref|YP_001809172.1| site-specific tyrosine recombinase XerD [Burkholderia ambifaria MC40-6] gi|171994037|gb|ACB64956.1| tyrosine recombinase XerD [Burkholderia ambifaria MC40-6] Length = 322 Score = 125 bits (314), Expect = 8e-27, Method: Composition-based stats. Identities = 48/288 (16%), Positives = 89/288 (30%), Gaps = 27/288 (9%) Query: 66 KKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFDYRKITTKHIRS 121 ++ + + LA N+ ++ Q + D + Sbjct: 29 ASRASIDVFCDALWLEH----GLARNTLDAYRRDLVLFSQWLAAMHDAPLDSADEAMLIG 84 Query: 122 GVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + +R +S+ + L+ R + WAVR+ +P L + K+ ++ ++ Sbjct: 85 YIAARSDGKATSSNRRLSVFRRYYGWAVREHRANADPTLRITSAKQAARFPSTLSEAQVE 144 Query: 181 QFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITV 235 G+ + R E + SGLR S+ + N ++ V Sbjct: 145 ALLGAPDVGTPLGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGSKERLV 204 Query: 236 ELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--N 283 + + F+ M QF K A +A V + Sbjct: 205 PFGEVAHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRAH 264 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 S H +R AT + GA + G + + YT A R RL Sbjct: 265 LSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVA-RERL 311 >gi|119943804|ref|YP_941484.1| tyrosine recombinase XerC [Psychromonas ingrahamii 37] gi|254799353|sp|A1SQX0|XERC_PSYIN RecName: Full=Tyrosine recombinase xerC gi|119862408|gb|ABM01885.1| tyrosine recombinase XerC subunit [Psychromonas ingrahamii 37] Length = 299 Score = 125 bits (314), Expect = 8e-27, Method: Composition-based stats. Identities = 40/272 (14%), Positives = 95/272 (34%), Gaps = 21/272 (7%) Query: 74 LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGVESRKHT 129 LI Y L+ + +++S + + + ++ + +R V++ Sbjct: 7 LIDTYLNHIASQRGLSPVTITNYQSNLAEFVALLNENKVGCWTELDGQLVRLMVKTLHKK 66 Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 S L+++R + V+ + ++ NP + PK + + +DM Q Sbjct: 67 GLKARSIATKLSALRSFLDYLVQFDILSNNPAKGIAAPKLDKPLPKNVSVDDMFQLLDID 126 Query: 187 SEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFM 242 + + + E + SGLR S+ +Q ++ + + T K + + D + Sbjct: 127 EKDPLSIRDQCMMELMYSSGLRLSELVGINLQDIKLSAKEIMVTGKGSKQRLLPITDRAV 186 Query: 243 KLLAMTPIGKETFFINN--------DKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKF 292 + + + F I + K++++A + K + H +R Sbjct: 187 ATVKIWLKIRPEFCIKDEKALFVSKQKKRISARNVQARMEKWGLKQALPGHINPHKLRHS 246 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324 AT ++ + G + + YT Sbjct: 247 FATHMLESSGNLRAVQTLLGHADLATTQIYTH 278 >gi|293609893|ref|ZP_06692195.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292828345|gb|EFF86708.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 304 Score = 125 bits (314), Expect = 9e-27, Method: Composition-based stats. Identities = 47/279 (16%), Positives = 91/279 (32%), Gaps = 27/279 (9%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR---- 126 L+S + K + + ++ ++E + D R I +R + R Sbjct: 6 QLLSMWLKERKIQNQSEHTINAYERDVKSFLEFCEHKQLDLRNIEASDLREYLAQRVEQD 65 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + + SS + LTS+R KWA + +Y+ INP + ++ E + Q Sbjct: 66 QLSSSSMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILDQP 125 Query: 187 SEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVEL 237 + + E L SGLR ++ V+ + N ++ V Sbjct: 126 MPEKPVDQQLWLRDKAMLELLYSSGLRLAELQGLTVKDVDFNRQLVRITGKGNKTRIVPF 185 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAGV--NKS 285 + L + + + D+ Q K +A +AGV + Sbjct: 186 GKKAKESLLNWLKVYKIWKGHFDQNDSVFISLRGGALTPRQIEKRVKLQAQRAGVNVDLH 245 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R A+ + + G + + YT Sbjct: 246 PHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTH 284 >gi|85859956|ref|YP_462158.1| phage integrase family protein [Syntrophus aciditrophicus SB] gi|85723047|gb|ABC77990.1| phage integrase family protein [Syntrophus aciditrophicus SB] Length = 364 Score = 125 bits (314), Expect = 9e-27, Method: Composition-based stats. Identities = 52/340 (15%), Positives = 103/340 (30%), Gaps = 15/340 (4%) Query: 17 RHGKIIYY-FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75 + G + + F + R + L G + ++ K L+ Sbjct: 5 KRGTVWWMSFSHNGEQFRRSTETEDRKLAIRIFDKLKGDIAEGKWFEKLPGDSYKFKDLM 64 Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HTPSS 132 +Y + A +S +S Q+ G+ ++T I R+ + + Sbjct: 65 DKYMTEYSAVNKAASSYKRDKSIVTQLKSYFGEKYLTELTPAMISDYKVKRRSDGVSSRT 124 Query: 133 AIQFLTSMRVLFKWAVRQEYV-AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 L +M F A+R+ + NP V++ + + R T E+ + Q Sbjct: 125 INYELITMSHAFNLAIREWGLANENPVSKVKKDRVTNKIERWLTSEEETNLLKESPKWLQ 184 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251 F +++GLR S+ + ++ + LP + + Sbjct: 185 D--IIIFAIHTGLRQSEILDLKWSQVDMKRRTVTIHEQKNRCIDTLPLNETAMTVLKNRH 242 Query: 252 KETFFINNDKQKMN------ATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATA 304 + F KA + N H +R AT GA Sbjct: 243 NPELPLEGYVFPNTLGDRKGNRLLLKAFYVALKKANISNFRFHDLRHTFATRLIRKGADL 302 Query: 305 HELMATYGWKTVDQAETYT-KGADRIRLGIKNSRRISSVV 343 + + WKTV + Y + +R I+ + + Sbjct: 303 YTVQKLGRWKTVTMVQRYAHHHTESLRAAIEMMDDVEKPI 342 >gi|16131663|ref|NP_418256.1| site-specific tyrosine recombinase [Escherichia coli str. K-12 substr. MG1655] gi|26250551|ref|NP_756591.1| site-specific tyrosine recombinase XerC [Escherichia coli CFT073] gi|74314323|ref|YP_312742.1| site-specific tyrosine recombinase XerC [Shigella sonnei Ss046] gi|82546162|ref|YP_410109.1| site-specific tyrosine recombinase XerC [Shigella boydii Sb227] gi|89110208|ref|AP_003988.1| site-specific tyrosine recombinase [Escherichia coli str. K-12 substr. W3110] gi|157163288|ref|YP_001460606.1| site-specific tyrosine recombinase XerC [Escherichia coli HS] gi|170022166|ref|YP_001727120.1| site-specific tyrosine recombinase XerC [Escherichia coli ATCC 8739] gi|170083293|ref|YP_001732613.1| site-specific tyrosine recombinase [Escherichia coli str. K-12 substr. DH10B] gi|170683603|ref|YP_001746128.1| site-specific tyrosine recombinase XerC [Escherichia coli SMS-3-5] gi|187731086|ref|YP_001882505.1| site-specific tyrosine recombinase XerC [Shigella boydii CDC 3083-94] gi|188496206|ref|ZP_03003476.1| tyrosine recombinase XerC [Escherichia coli 53638] gi|191166069|ref|ZP_03027904.1| tyrosine recombinase XerC [Escherichia coli B7A] gi|193065702|ref|ZP_03046767.1| tyrosine recombinase XerC [Escherichia coli E22] gi|194429226|ref|ZP_03061754.1| tyrosine recombinase XerC [Escherichia coli B171] gi|209921289|ref|YP_002295373.1| site-specific tyrosine recombinase XerC [Escherichia coli SE11] gi|218550965|ref|YP_002384756.1| site-specific tyrosine recombinase XerC [Escherichia fergusonii ATCC 35469] gi|218692087|ref|YP_002400299.1| site-specific tyrosine recombinase XerC [Escherichia coli ED1a] gi|218697529|ref|YP_002405196.1| site-specific tyrosine recombinase XerC [Escherichia coli 55989] gi|218701275|ref|YP_002408904.1| site-specific tyrosine recombinase XerC [Escherichia coli IAI39] gi|218707445|ref|YP_002414964.1| site-specific tyrosine recombinase XerC [Escherichia coli UMN026] gi|227888604|ref|ZP_04006409.1| site-specific tyrosine recombinase [Escherichia coli 83972] gi|238902887|ref|YP_002928683.1| site-specific tyrosine recombinase [Escherichia coli BW2952] gi|254039023|ref|ZP_04873074.1| tyrosine recombinase xerC [Escherichia sp. 1_1_43] gi|256021445|ref|ZP_05435310.1| site-specific tyrosine recombinase XerC [Shigella sp. D9] gi|256026158|ref|ZP_05440023.1| site-specific tyrosine recombinase XerC [Escherichia sp. 4_1_40B] gi|260846413|ref|YP_003224191.1| site-specific tyrosine recombinase XerC [Escherichia coli O103:H2 str. 12009] gi|260857783|ref|YP_003231674.1| site-specific tyrosine recombinase XerC [Escherichia coli O26:H11 str. 11368] gi|260870536|ref|YP_003236938.1| site-specific tyrosine recombinase XerC [Escherichia coli O111:H- str. 11128] gi|293407438|ref|ZP_06651358.1| xerC [Escherichia coli FVEC1412] gi|293413253|ref|ZP_06655915.1| tyrosine recombinase XerC [Escherichia coli B354] gi|293468129|ref|ZP_06664541.1| tyrosine recombinase XerC [Escherichia coli B088] gi|298383178|ref|ZP_06992772.1| tyrosine recombinase xerC [Escherichia coli FVEC1302] gi|300818718|ref|ZP_07098925.1| tyrosine recombinase XerC [Escherichia coli MS 107-1] gi|300823347|ref|ZP_07103478.1| tyrosine recombinase XerC [Escherichia coli MS 119-7] gi|300900639|ref|ZP_07118797.1| tyrosine recombinase XerC [Escherichia coli MS 198-1] gi|300939969|ref|ZP_07154597.1| tyrosine recombinase XerC [Escherichia coli MS 21-1] gi|300950424|ref|ZP_07164346.1| tyrosine recombinase XerC [Escherichia coli MS 116-1] gi|300955183|ref|ZP_07167580.1| tyrosine recombinase XerC [Escherichia coli MS 175-1] gi|300985705|ref|ZP_07177560.1| tyrosine recombinase XerC [Escherichia coli MS 45-1] gi|301025744|ref|ZP_07189259.1| tyrosine recombinase XerC [Escherichia coli MS 69-1] gi|301029028|ref|ZP_07192182.1| tyrosine recombinase XerC [Escherichia coli MS 196-1] gi|301047307|ref|ZP_07194393.1| tyrosine recombinase XerC [Escherichia coli MS 185-1] gi|301646121|ref|ZP_07246021.1| tyrosine recombinase XerC [Escherichia coli MS 146-1] gi|307140510|ref|ZP_07499866.1| site-specific tyrosine recombinase XerC [Escherichia coli H736] gi|307313615|ref|ZP_07593235.1| tyrosine recombinase XerC [Escherichia coli W] gi|331644544|ref|ZP_08345664.1| tyrosine recombinase XerC [Escherichia coli H736] gi|331660156|ref|ZP_08361092.1| tyrosine recombinase XerC [Escherichia coli TA206] gi|331670657|ref|ZP_08371494.1| tyrosine recombinase XerC [Escherichia coli TA271] gi|331679921|ref|ZP_08380584.1| tyrosine recombinase XerC [Escherichia coli H591] gi|331685531|ref|ZP_08386115.1| tyrosine recombinase XerC [Escherichia coli H299] gi|67475542|sp|P0A8P6|XERC_ECOLI RecName: Full=Tyrosine recombinase xerC gi|67475545|sp|P0A8P7|XERC_ECOL6 RecName: Full=Tyrosine recombinase xerC gi|123728303|sp|Q31UH7|XERC_SHIBS RecName: Full=Tyrosine recombinase xerC gi|123732258|sp|Q3YVF5|XERC_SHISS RecName: Full=Tyrosine recombinase xerC gi|166918884|sp|A8A6R9|XERC_ECOHS RecName: Full=Tyrosine recombinase xerC gi|189030076|sp|B1IW93|XERC_ECOLC RecName: Full=Tyrosine recombinase xerC gi|254799333|sp|B7L968|XERC_ECO55 RecName: Full=Tyrosine recombinase xerC gi|254799335|sp|B7NTD1|XERC_ECO7I RecName: Full=Tyrosine recombinase xerC gi|254799336|sp|B7N2A1|XERC_ECO81 RecName: Full=Tyrosine recombinase xerC gi|254799338|sp|B1XAH7|XERC_ECODH RecName: Full=Tyrosine recombinase xerC gi|254799339|sp|B7NFB3|XERC_ECOLU RecName: Full=Tyrosine recombinase xerC gi|254799340|sp|B6I4F2|XERC_ECOSE RecName: Full=Tyrosine recombinase xerC gi|254799341|sp|B1LLY2|XERC_ECOSM RecName: Full=Tyrosine recombinase xerC gi|254799342|sp|B7LU45|XERC_ESCF3 RecName: Full=Tyrosine recombinase xerC gi|254799357|sp|B2TUW7|XERC_SHIB3 RecName: Full=Tyrosine recombinase xerC gi|259710430|sp|C4ZZ74|XERC_ECOBW RecName: Full=Tyrosine recombinase xerC gi|26110981|gb|AAN83165.1|AE016769_280 Integrase/recombinase xerC [Escherichia coli CFT073] gi|148270|gb|AAA24763.1| lambda-integrase [Escherichia coli] gi|1790244|gb|AAC76814.1| site-specific tyrosine recombinase [Escherichia coli str. K-12 substr. MG1655] gi|73857800|gb|AAZ90507.1| site-specific recombinase, acts on cer sequence of ColE1, effects chromosome segregation at cell division [Shigella sonnei Ss046] gi|81247573|gb|ABB68281.1| site-specific recombinase [Shigella boydii Sb227] gi|85676239|dbj|BAE77489.1| site-specific tyrosine recombinase [Escherichia coli str. K12 substr. W3110] gi|157068968|gb|ABV08223.1| tyrosine recombinase XerC [Escherichia coli HS] gi|169757094|gb|ACA79793.1| tyrosine recombinase XerC [Escherichia coli ATCC 8739] gi|169891128|gb|ACB04835.1| site-specific tyrosine recombinase [Escherichia coli str. K-12 substr. DH10B] gi|170521321|gb|ACB19499.1| tyrosine recombinase XerC [Escherichia coli SMS-3-5] gi|187428078|gb|ACD07352.1| tyrosine recombinase XerC [Shigella boydii CDC 3083-94] gi|188491405|gb|EDU66508.1| tyrosine recombinase XerC [Escherichia coli 53638] gi|190903845|gb|EDV63559.1| tyrosine recombinase XerC [Escherichia coli B7A] gi|192926669|gb|EDV81298.1| tyrosine recombinase XerC [Escherichia coli E22] gi|194412738|gb|EDX29032.1| tyrosine recombinase XerC [Escherichia coli B171] gi|209914548|dbj|BAG79622.1| recombinase [Escherichia coli SE11] gi|218354261|emb|CAV00939.1| site-specific tyrosine recombinase [Escherichia coli 55989] gi|218358506|emb|CAQ91153.1| site-specific tyrosine recombinase [Escherichia fergusonii ATCC 35469] gi|218371261|emb|CAR19095.1| site-specific tyrosine recombinase [Escherichia coli IAI39] gi|218429651|emb|CAR10472.1| site-specific tyrosine recombinase [Escherichia coli ED1a] gi|218434542|emb|CAR15469.1| site-specific tyrosine recombinase [Escherichia coli UMN026] gi|226838714|gb|EEH70742.1| tyrosine recombinase xerC [Escherichia sp. 1_1_43] gi|227834443|gb|EEJ44909.1| site-specific tyrosine recombinase [Escherichia coli 83972] gi|238863558|gb|ACR65556.1| site-specific tyrosine recombinase [Escherichia coli BW2952] gi|257756432|dbj|BAI27934.1| site-specific tyrosine recombinase XerC [Escherichia coli O26:H11 str. 11368] gi|257761560|dbj|BAI33057.1| site-specific tyrosine recombinase XerC [Escherichia coli O103:H2 str. 12009] gi|257766892|dbj|BAI38387.1| site-specific tyrosine recombinase XerC [Escherichia coli O111:H- str. 11128] gi|260451346|gb|ACX41768.1| tyrosine recombinase XerC [Escherichia coli DH1] gi|291321507|gb|EFE60945.1| tyrosine recombinase XerC [Escherichia coli B088] gi|291425549|gb|EFE98587.1| xerC [Escherichia coli FVEC1412] gi|291468201|gb|EFF10698.1| tyrosine recombinase XerC [Escherichia coli B354] gi|298276414|gb|EFI17933.1| tyrosine recombinase xerC [Escherichia coli FVEC1302] gi|299878022|gb|EFI86233.1| tyrosine recombinase XerC [Escherichia coli MS 196-1] gi|300300826|gb|EFJ57211.1| tyrosine recombinase XerC [Escherichia coli MS 185-1] gi|300317900|gb|EFJ67684.1| tyrosine recombinase XerC [Escherichia coli MS 175-1] gi|300355855|gb|EFJ71725.1| tyrosine recombinase XerC [Escherichia coli MS 198-1] gi|300395867|gb|EFJ79405.1| tyrosine recombinase XerC [Escherichia coli MS 69-1] gi|300407979|gb|EFJ91517.1| tyrosine recombinase XerC [Escherichia coli MS 45-1] gi|300450231|gb|EFK13851.1| tyrosine recombinase XerC [Escherichia coli MS 116-1] gi|300455173|gb|EFK18666.1| tyrosine recombinase XerC [Escherichia coli MS 21-1] gi|300524133|gb|EFK45202.1| tyrosine recombinase XerC [Escherichia coli MS 119-7] gi|300528684|gb|EFK49746.1| tyrosine recombinase XerC [Escherichia coli MS 107-1] gi|301075647|gb|EFK90453.1| tyrosine recombinase XerC [Escherichia coli MS 146-1] gi|306906596|gb|EFN37108.1| tyrosine recombinase XerC [Escherichia coli W] gi|307555937|gb|ADN48712.1| integrase/recombinase XerC [Escherichia coli ABU 83972] gi|309704246|emb|CBJ03594.1| tyrosine recombinase [Escherichia coli ETEC H10407] gi|315063103|gb|ADT77430.1| site-specific tyrosine recombinase [Escherichia coli W] gi|315138388|dbj|BAJ45547.1| xerC [Escherichia coli DH1] gi|315293146|gb|EFU52498.1| tyrosine recombinase XerC [Escherichia coli MS 153-1] gi|315296792|gb|EFU56084.1| tyrosine recombinase XerC [Escherichia coli MS 16-3] gi|320185472|gb|EFW60241.1| Tyrosine recombinase XerC [Shigella flexneri CDC 796-83] gi|320198482|gb|EFW73083.1| Tyrosine recombinase XerC [Escherichia coli EC4100B] gi|323155217|gb|EFZ41401.1| tyrosine recombinase XerC [Escherichia coli EPECa14] gi|323161125|gb|EFZ47043.1| tyrosine recombinase XerC [Escherichia coli E128010] gi|323173426|gb|EFZ59055.1| tyrosine recombinase XerC [Escherichia coli LT-68] gi|323177824|gb|EFZ63408.1| tyrosine recombinase XerC [Escherichia coli 1180] gi|323182583|gb|EFZ67987.1| tyrosine recombinase XerC [Escherichia coli 1357] gi|323380833|gb|ADX53101.1| tyrosine recombinase XerC [Escherichia coli KO11] gi|323934199|gb|EGB30630.1| tyrosine recombinase XerC [Escherichia coli E1520] gi|323938947|gb|EGB35166.1| tyrosine recombinase XerC [Escherichia coli E482] gi|323943787|gb|EGB39882.1| tyrosine recombinase XerC [Escherichia coli H120] gi|324016212|gb|EGB85431.1| tyrosine recombinase XerC [Escherichia coli MS 117-3] gi|324111036|gb|EGC05023.1| tyrosine recombinase XerC [Escherichia fergusonii B253] gi|324115726|gb|EGC09661.1| tyrosine recombinase XerC [Escherichia coli E1167] gi|331036216|gb|EGI08451.1| tyrosine recombinase XerC [Escherichia coli H736] gi|331052724|gb|EGI24759.1| tyrosine recombinase XerC [Escherichia coli TA206] gi|331062130|gb|EGI34052.1| tyrosine recombinase XerC [Escherichia coli TA271] gi|331072468|gb|EGI43800.1| tyrosine recombinase XerC [Escherichia coli H591] gi|331077232|gb|EGI48446.1| tyrosine recombinase XerC [Escherichia coli H299] gi|332089061|gb|EGI94172.1| tyrosine recombinase XerC [Shigella boydii 3594-74] gi|332105033|gb|EGJ08379.1| tyrosine recombinase xerC [Shigella sp. D9] Length = 298 Score = 125 bits (314), Expect = 9e-27, Method: Composition-based stats. Identities = 42/278 (15%), Positives = 90/278 (32%), Gaps = 21/278 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SRK 127 + Y + L+ + ++++ + II + + + + + Sbjct: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +S L+++R F W V Q + NP V PK + +DM + Sbjct: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI 127 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243 + R E + +GLR S+ ++HL + K + + + Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187 Query: 244 LLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 + ++ F +D ++++A F K G+ + H +R A Sbjct: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 T ++ + G + + YT D L Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 284 >gi|254459169|ref|ZP_05072591.1| phage integrase [Campylobacterales bacterium GD 1] gi|207084062|gb|EDZ61352.1| phage integrase [Campylobacterales bacterium GD 1] Length = 277 Score = 125 bits (314), Expect = 9e-27, Method: Composition-based stats. Identities = 35/259 (13%), Positives = 82/259 (31%), Gaps = 10/259 (3%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 + + + +L+ S +++ I + + + + S + K+ + Sbjct: 11 LEAFIEYISVTRALSKKSVEAYKGDLSSIEDEL-QIPLINLESNSVLSFLSKYKNK-RTL 68 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWSEG 189 + L+++ F + + + A + K + + +++Q G Sbjct: 69 NRKLSAINAFFDFCYKSHFSAEKT--KYKFAKIPKLLPKFLSYKEIQNSLLLIDRNSWLG 126 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249 + FL SG R S+ + +++ I+ K V + + ++ Sbjct: 127 LRDYALIIFLFASGARISECLALRREDIEDGWLHIRHAKGEKERIVPVAKVALDAISTYL 186 Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMA 309 K S K T+ +N S H +R AT GA + Sbjct: 187 NEKPKENEYVWCN-YKGDALSRISAYKITQKYLNVSPHVLRHSYATSLISGGADLRVVQE 245 Query: 310 TYGWKTVDQAETYTKGADR 328 G ++ + YT + Sbjct: 246 LLGHASLLTTQIYTHIQKQ 264 >gi|262392887|ref|YP_003284741.1| tyrosine recombinase XerC [Vibrio sp. Ex25] gi|262336481|gb|ACY50276.1| tyrosine recombinase XerC [Vibrio sp. Ex25] Length = 310 Score = 125 bits (314), Expect = 9e-27, Method: Composition-based stats. Identities = 40/286 (13%), Positives = 99/286 (34%), Gaps = 22/286 (7%) Query: 68 PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRS-- 121 P +L+ + + + L+++++ +++ + + + G D+ ++ +R Sbjct: 10 PNSLQKPLERFYEFLRSEKGLSLHTQRNYKQQLETMAQHLAEMGLKDWSQVDAGWVRQLA 69 Query: 122 -GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 SS L+S+R F + + + ++ NP V P++K + +++ Sbjct: 70 GKGMREGMKASSLATRLSSLRSFFDFLILRGEMSANPAKGVSAPRKKRPLPKNLDVDEVS 129 Query: 181 QFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236 Q + + R E + +GLR ++ V+ +Q ++ V Sbjct: 130 QLLEVNEDDPLAVRDRAMMELMYGAGLRLAELVSVDVRDVQLRSGELRVIGKGDKERKVP 189 Query: 237 LPDGFMKLLAMTPIGK--------ETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 + +A + F++ +++ K V + S Sbjct: 190 FSGMATEWVAKWLKVRGDLAAPGEPALFVSKLGTRISHRSVQKRMAEWGQKQSVASHISP 249 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R AT ++ + G + + + YT D L Sbjct: 250 HKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTH-LDFQHLA 294 >gi|170740412|ref|YP_001769067.1| tyrosine recombinase XerD [Methylobacterium sp. 4-46] gi|168194686|gb|ACA16633.1| tyrosine recombinase XerD [Methylobacterium sp. 4-46] Length = 309 Score = 125 bits (314), Expect = 9e-27, Method: Composition-based stats. Identities = 49/284 (17%), Positives = 88/284 (30%), Gaps = 28/284 (9%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVES---RK 127 L+ Y + N+ ++ D + D + +R+ V R Sbjct: 11 LMQPYLDMLAAERGASANTLAAYRRDLDDYLAHLAAEGLDPASVAPAGVRAYVADLAARG 70 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 PSSA + L+ +R ++ + + +P V PKR + + ++ + Sbjct: 71 LKPSSAARRLSCIRGFHRFLYAEGHAPSDPTAPVSGPKRGRALPKVLSVAEVDTLLAVAK 130 Query: 188 EG-------------SQPRLAFEFLLYSGLRCSDSCR-AGVQHLQNNIFSIKTQKTGTII 233 E + E L +GLR S+ L F + K G Sbjct: 131 EAVARAPNPGEAARAQRLLCLLELLYATGLRVSELVSLPRAAALTKERFLVVRGKGGRER 190 Query: 234 -----TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KS 285 + L + G F +++ + F+ KA A AG+ S Sbjct: 191 LVPLTDIARAAMAAHLAHLAVPGPWLFPADSESGHLTRQAFARDLKAVAGAAGIRADRIS 250 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 H +R A+ GA + G + + YT D Sbjct: 251 PHVLRHAFASHLLQNGADLRVVQELLGHADISTTQIYTHILDER 294 >gi|260752898|ref|YP_003225791.1| integrase family protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552261|gb|ACV75207.1| integrase family protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 307 Score = 125 bits (314), Expect = 9e-27, Method: Composition-based stats. Identities = 42/294 (14%), Positives = 96/294 (32%), Gaps = 26/294 (8%) Query: 72 KWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 + LI + + + N+ +++ S ++ + + T GV + Sbjct: 14 ESLILRFLEMMAAESGSSPNTLMAYGSDLRLASQQLENGLVKADTDDLASLGVVWSDYAR 73 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE---------DMQQ 181 ++ + +++ +++ + + +P S+ + T + Sbjct: 74 NTVARKSAALKHFYRFLLEEGMRTDDPSSSLPHAGISRNLPKILTTAEVERLFVTLQQRY 133 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCR-AGVQHLQNNIFSIKTQKTGTIITVELPDG 240 ++ + E L SGLR S+ ++ F I K G V + D Sbjct: 134 DRAATPSTLRLMALVELLYGSGLRASELVSLPKQAFIRKQPFLILKGKGGRERLVPISDR 193 Query: 241 FMKLLAMTPIGKET---FFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSA 294 +A + + + K ++ + K A +A + + S H +R A Sbjct: 194 ATDAVAAWLVHVPEKSLWLFPSGKGHISRIRLYQLIKELAVEADLPRERVSPHVLRHAFA 253 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 T + GA L G + + YT + ++ +V+S P Sbjct: 254 THLLEGGADLRVLQLLLGHADISTTQIYTHVDSQ---------KLVELVNSRHP 298 >gi|167561111|ref|ZP_02354027.1| site-specific tyrosine recombinase XerC [Burkholderia oklahomensis EO147] Length = 306 Score = 125 bits (314), Expect = 9e-27, Method: Composition-based stats. Identities = 40/288 (13%), Positives = 91/288 (31%), Gaps = 31/288 (10%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTP 130 I++Y + L+ ++ ++ D++ + + +T +R + + + Sbjct: 6 IADYLSNLRHVRKLSDHTLRAYAHELDELKKLANGRPLESLTAVDVRGAVARAHAGGLSA 65 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 S L++ R ++W + + NP ++ PKR + + +D + G+ Sbjct: 66 RSISHRLSAWRAFYRWFAQHVEMNANPVATIRAPKRAKMLPKALSVDDAAALMDAPASGT 125 Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------GTIIT 234 + E SGLR ++ V +++ + + Sbjct: 126 AESLRDHAILELFYSSGLRLAELIGLDVAYVKIGEYRSEGWLDLAEAEVTVRGKGDKERK 185 Query: 235 VELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--K 284 V + + L F++ +M+ K A AG+ Sbjct: 186 VPVGRKAIDALNAWLAVRGEFVRHDPHPLFLSVRGNRMSPGVVRGRVKRAALAAGIPANV 245 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R AT + + G ++ + YT D L Sbjct: 246 HPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYT-SLDFQHLA 292 >gi|257881842|ref|ZP_05661495.1| integrase [Enterococcus faecium 1,231,502] gi|294619302|ref|ZP_06698771.1| integrase [Enterococcus faecium E1679] gi|257817500|gb|EEV44828.1| integrase [Enterococcus faecium 1,231,502] gi|291594462|gb|EFF25870.1| integrase [Enterococcus faecium E1679] Length = 382 Score = 125 bits (314), Expect = 9e-27, Method: Composition-based stats. Identities = 56/383 (14%), Positives = 119/383 (31%), Gaps = 54/383 (14%) Query: 11 VTKERTRHGKIIYYFRK--------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62 + + + ++G+ +YF+ G + AL+ + + Sbjct: 4 IKQYKKKNGEKAWYFKTYLGIDPLTGKKKYTTKRGFRTQKEAKT---ALSRLELELQKTG 60 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122 P TT K + +S + + + I K G+ KI T + + Sbjct: 61 MPTSTNTTFKEAAELWLESYKKTVKESSYSRTKIIFNKHIYPKFGNIKLSKINTAYCQKV 120 Query: 123 VESRKHTPSSAIQ--FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 V +S F+ M +FK+A+ + NP L++ PK + + + + Sbjct: 121 VNDWSEKGTSKQYPLFINYMNKVFKYAINIGLTSDNPTLNLLIPKPQIKTEKKLKLYTKE 180 Query: 181 Q---------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 Q + ++ F L +SG R + ++ + +KT Sbjct: 181 QLELFLNEVSQEQNPYFKNRDYTLFRLLAFSGCRIGEILALTWDNINFKTNEMAIKKTVA 240 Query: 232 IITVE---------------------------LPDGFMKLLAMTPIGKETFFINNDKQKM 264 K L K + ND+ Sbjct: 241 RSDKYYISETPKTKKSNRIIYLDEKTIKQLKFWKLEQRKYLFQLGFTKANYLFTNDENNF 300 Query: 265 NAT-QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-T 321 + + +AG+ HG R A++ +AGA E+ G + T Sbjct: 301 TINQSVAERYNIYRERAGLPYIGLHGFRHTHASMLYEAGADHKEVQERMGHANIKTTMDT 360 Query: 322 YTKGADRIRLGIKNSRRISSVVD 344 YT + + + ++++++ ++ Sbjct: 361 YTHITNSKK--EETTQKLTNYIN 381 >gi|228475035|ref|ZP_04059763.1| tyrosine recombinase XerC [Staphylococcus hominis SK119] gi|228271020|gb|EEK12408.1| tyrosine recombinase XerC [Staphylococcus hominis SK119] Length = 297 Score = 125 bits (314), Expect = 9e-27, Method: Composition-based stats. Identities = 37/265 (13%), Positives = 89/265 (33%), Gaps = 20/265 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKH---TPSSAIQFLTS 139 + + ++ ++ Q + + R K R+ + ++ + +++ Sbjct: 16 RNFSDHTLKAYHDDLAQFNQFLEQELLNLRTFEYKDARNYLSYLYSNNLKRTTVSRKIST 75 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLA 195 +R +++ + Q+ NP + + PK++ + + +E+M+ + +G + R+ Sbjct: 76 LRTFYEFWMTQDTSVNNPFIQLVHPKKEQYLPQFFYEEEMEALFNTVSNDAKKGLRDRVV 135 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLAMT------ 248 E L +G+R S+ V L N K V + + + Sbjct: 136 IELLYATGIRVSELVNIKVMDLDMNLPGVKVLGKGNKERFVPFGEFCRQSIEQYLEKFKP 195 Query: 249 --PIGKETFFINNDKQKMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGATA 304 +N + + AGV H +R AT + GA Sbjct: 196 LKSKSHPYLIVNMKGDPITERGVRYLLNDVVERTAGVTEIHPHKLRHTFATHLLNQGADL 255 Query: 305 HELMATYGWKTVDQAETYTKGADRI 329 + + G + YT +++ Sbjct: 256 RTVQSLLGHVNLSTTGKYTHVSNQQ 280 >gi|325125940|gb|ADY85270.1| Tyrosine recombinase xerC [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 295 Score = 125 bits (314), Expect = 9e-27, Method: Composition-based stats. Identities = 42/298 (14%), Positives = 109/298 (36%), Gaps = 27/298 (9%) Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFD-YRKITTKHIRSGVE 124 TL+ Y K+ S + + ++++ + +++G F + +I+ + + + Sbjct: 1 MTLEEQFLSYLKNE--RSYSPKTVLAYQKDLAATKKFWQENGGFPGWDQISRRDLEIYLL 58 Query: 125 SRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + S+ + L+S++ +++ R+ V +P ++++ + K + + ++++ Q Sbjct: 59 ATGQKLASSTLSRKLSSLKSFYRFLTRRGLVKADPTVAIQLRRGKKKLPEFFYQDEVGQV 118 Query: 183 KSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVEL 237 ++G + R +G+R S+ ++ L I K V Sbjct: 119 IRSLNDGKPLTVRNRAIVALFYATGMRLSELTDLKIKQLDLENGMILVHGKGNKDRYVFF 178 Query: 238 PDGFMKLLAMTPIGKET-----------FFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284 K L F+N + +++ + + KAG+ Sbjct: 179 DQESKKYLEEYLQAARPSLLKNEPDTGAVFLNKLGRPISSRGIAKAVQQIFQKAGLTAGA 238 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342 H +R AT + GA + G + + + YT + + L ++ + Sbjct: 239 HPHELRHSFATAMLNNGADLRSVQELLGHEDLSTTQIYTHVSMQ-HLTVEYRQHFPRK 295 >gi|28899755|ref|NP_799360.1| site-specific tyrosine recombinase XerC [Vibrio parahaemolyticus RIMD 2210633] gi|153838746|ref|ZP_01991413.1| tyrosine recombinase XerC [Vibrio parahaemolyticus AQ3810] gi|260878123|ref|ZP_05890478.1| tyrosine recombinase XerC [Vibrio parahaemolyticus AN-5034] gi|260895820|ref|ZP_05904316.1| tyrosine recombinase XerC [Vibrio parahaemolyticus Peru-466] gi|260900847|ref|ZP_05909242.1| tyrosine recombinase XerC [Vibrio parahaemolyticus AQ4037] gi|81726659|sp|Q87KJ6|XERC_VIBPA RecName: Full=Tyrosine recombinase xerC gi|28808007|dbj|BAC61244.1| integrase/recombinase XerC [Vibrio parahaemolyticus RIMD 2210633] gi|149747832|gb|EDM58716.1| tyrosine recombinase XerC [Vibrio parahaemolyticus AQ3810] gi|308087191|gb|EFO36886.1| tyrosine recombinase XerC [Vibrio parahaemolyticus Peru-466] gi|308092778|gb|EFO42473.1| tyrosine recombinase XerC [Vibrio parahaemolyticus AN-5034] gi|308110579|gb|EFO48119.1| tyrosine recombinase XerC [Vibrio parahaemolyticus AQ4037] Length = 310 Score = 125 bits (314), Expect = 9e-27, Method: Composition-based stats. Identities = 39/286 (13%), Positives = 98/286 (34%), Gaps = 22/286 (7%) Query: 68 PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRS-- 121 P +L+ + + + L+++++ +++ + + + G D+ ++ +R Sbjct: 10 PNSLQKPLERFYEFLRSEKGLSLHTQRNYKQQLETMAQHLAEMGLKDWSQVDAGWVRQLA 69 Query: 122 -GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 SS L+S+R F + + + ++ NP V P++K + +++ Sbjct: 70 GKGMREGMKASSLATRLSSLRSFFDFLILRGEMSANPAKGVSAPRKKRPLPKNLDVDEVN 129 Query: 181 QFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236 Q + + R E + +GLR ++ V+ +Q ++ V Sbjct: 130 QLLEVNEDDPLAIRDRAMMELMYGAGLRLAELVSVDVRDVQLRSGELRVIGKGDKERKVP 189 Query: 237 LPDGFMKLLAMTPIGK--------ETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 + + + F++ +++ K V + S Sbjct: 190 FSGMATEWVGKWLRVRGDLAAPGEPALFVSKLGTRISHRSVQKRMAEWGQKQSVASHISP 249 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R AT ++ + G + + + YT D L Sbjct: 250 HKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTH-LDFQHLA 294 >gi|254512300|ref|ZP_05124367.1| tyrosine recombinase XerC [Rhodobacteraceae bacterium KLH11] gi|221536011|gb|EEE38999.1| tyrosine recombinase XerC [Rhodobacteraceae bacterium KLH11] Length = 306 Score = 125 bits (314), Expect = 9e-27, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 84/289 (29%), Gaps = 29/289 (10%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSG 122 + + + S + N++ ++ + + G +IT +R+ Sbjct: 9 RDALQHWLDSLRALAGRSENTQNAYRGDVTEFLSFMTLHHSERQGLAALERITVSDMRAW 68 Query: 123 VESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + ++++ SA + L++++ ++W +E LS PK + RP ++ Sbjct: 69 MADQRNSDVSARSLARKLSAVKSFYRWLAEREGFEPTAVLSTRAPKFTKKLPRPLAEDAA 128 Query: 180 QQFKSF-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 + ++ L GLR S++ K Sbjct: 129 RAMIETVELQSASDWVAARDVAVVTLLYGCGLRISEALSLTGADAPLPDTLRILGKGEKE 188 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKM-------NATQFSIWFKAKATKAGVNKS 285 V + + + N + + G+ + Sbjct: 189 RVVPVIPAARSAVDRYLRLCPHPQSPDAALFRGVRGGALNPSAIQGVMAKARMQLGLPAT 248 Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R AT AG + G ++ + YT D RL Sbjct: 249 ATPHAMRHSFATHLLSAGGDLRAIQELLGHASLSTTQAYT-AVDTARLM 296 >gi|157377259|ref|YP_001475859.1| tyrosine recombinase XerC [Shewanella sediminis HAW-EB3] gi|157319633|gb|ABV38731.1| tyrosine recombinase XerC [Shewanella sediminis HAW-EB3] Length = 301 Score = 125 bits (314), Expect = 9e-27, Method: Composition-based stats. Identities = 30/278 (10%), Positives = 86/278 (30%), Gaps = 19/278 (6%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF-DYRKITTKHIR---SGVESRK 127 ++ L+ ++ ++ +++ ++ + + +T + ++ S + + Sbjct: 4 EWFQKFESYLSAERQLSKHTVRNYLYELERVSKRLDETTSWLDVTREQLQGALSQIHRQG 63 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +P S L++++ + + + + NP +S+ PK+ + + + Sbjct: 64 LSPRSISLTLSAIKQFCDFLLAEGAIQANPAMSLSAPKQNKPLPKNMDLDSVTHLLEIDG 123 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELPDGFMK 243 + + + E SGLR ++ V+ + K V + + M Sbjct: 124 DDPLSVRDKAIMELFYSSGLRLAELAALDVKDIDFGERQVKVMGKGSKERIVPIGNMAMN 183 Query: 244 LLAMTPIGKETFFINNDKQKMN-------ATQFSIWFKAKAT--KAGVNKSAHGVRKFSA 294 + ++ + + + H +R A Sbjct: 184 AIECWLTCRKGIVCEDGALFVTGKGKRLAHRSIQARLAKWGQEQALNMRVHPHKLRHSFA 243 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 T ++ A + G + + YT D L Sbjct: 244 THMLESSADLRAVQELLGHANLSTTQIYT-SLDFQHLA 280 >gi|15804400|ref|NP_290440.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H7 EDL933] gi|15833995|ref|NP_312768.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H7 str. Sakai] gi|168750377|ref|ZP_02775399.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4113] gi|168753708|ref|ZP_02778715.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4401] gi|168763936|ref|ZP_02788943.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4501] gi|168768092|ref|ZP_02793099.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4486] gi|168775638|ref|ZP_02800645.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4196] gi|168780710|ref|ZP_02805717.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4076] gi|168801125|ref|ZP_02826132.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC508] gi|195938100|ref|ZP_03083482.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4024] gi|208806813|ref|ZP_03249150.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4206] gi|208813099|ref|ZP_03254428.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4045] gi|208821301|ref|ZP_03261621.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4042] gi|209397621|ref|YP_002273328.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4115] gi|217326194|ref|ZP_03442278.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. TW14588] gi|254795807|ref|YP_003080644.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H7 str. TW14359] gi|261225585|ref|ZP_05939866.1| site-specific tyrosine recombinase [Escherichia coli O157:H7 str. FRIK2000] gi|261255631|ref|ZP_05948164.1| site-specific tyrosine recombinase [Escherichia coli O157:H7 str. FRIK966] gi|291285225|ref|YP_003502043.1| Tyrosine recombinase xerC [Escherichia coli O55:H7 str. CB9615] gi|34222932|sp|Q8X4T6|XERC_ECO57 RecName: Full=Tyrosine recombinase xerC gi|254799334|sp|B5YY58|XERC_ECO5E RecName: Full=Tyrosine recombinase xerC gi|12518679|gb|AAG59004.1|AE005612_7 site-specific recombinase, acts on cer sequence of ColE1, effects chromosome segregation at cell division [Escherichia coli O157:H7 str. EDL933] gi|13364217|dbj|BAB38164.1| site-specific recombinase XerC [Escherichia coli O157:H7 str. Sakai] gi|187768906|gb|EDU32750.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4196] gi|188015455|gb|EDU53577.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4113] gi|189001561|gb|EDU70547.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4076] gi|189358976|gb|EDU77395.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4401] gi|189362670|gb|EDU81089.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4486] gi|189365973|gb|EDU84389.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4501] gi|189376684|gb|EDU95100.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC508] gi|208726614|gb|EDZ76215.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4206] gi|208734376|gb|EDZ83063.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4045] gi|208741424|gb|EDZ89106.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4042] gi|209159021|gb|ACI36454.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4115] gi|209753248|gb|ACI74931.1| putative phosphatase [Escherichia coli] gi|209753250|gb|ACI74932.1| putative phosphatase [Escherichia coli] gi|209753252|gb|ACI74933.1| putative phosphatase [Escherichia coli] gi|209753254|gb|ACI74934.1| putative phosphatase [Escherichia coli] gi|209753256|gb|ACI74935.1| putative phosphatase [Escherichia coli] gi|217322415|gb|EEC30839.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. TW14588] gi|254595207|gb|ACT74568.1| site-specific tyrosine recombinase [Escherichia coli O157:H7 str. TW14359] gi|290765098|gb|ADD59059.1| Tyrosine recombinase xerC [Escherichia coli O55:H7 str. CB9615] gi|320191096|gb|EFW65746.1| Tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC1212] gi|320639294|gb|EFX08916.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H7 str. G5101] gi|320644679|gb|EFX13729.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H- str. 493-89] gi|320650004|gb|EFX18507.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H- str. H 2687] gi|320655350|gb|EFX23292.1| site-specific tyrosine recombinase XerC [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320660976|gb|EFX28419.1| site-specific tyrosine recombinase XerC [Escherichia coli O55:H7 str. USDA 5905] gi|320666100|gb|EFX33114.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H7 str. LSU-61] gi|326344267|gb|EGD68027.1| Tyrosine recombinase XerC [Escherichia coli O157:H7 str. 1125] gi|326347905|gb|EGD71619.1| Tyrosine recombinase XerC [Escherichia coli O157:H7 str. 1044] Length = 298 Score = 125 bits (314), Expect = 9e-27, Method: Composition-based stats. Identities = 41/278 (14%), Positives = 94/278 (33%), Gaps = 21/278 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSG---VESRK 127 + Y + L+ + ++++ + ++G ++++ +R+ + Sbjct: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQNWQQCDAAMVRNFAVRSRRKG 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +S L+++R F W V Q + NP V PK + +D+ + Sbjct: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKTPRHLPKNIDVDDINRLLDIDI 127 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243 + R E + +GLR S+ ++HL + K + + + Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNALS 187 Query: 244 LLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 + ++ F +D ++++A F K G+ + H +R A Sbjct: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 T ++ + G + + YT D L Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 284 >gi|301312479|ref|ZP_07218393.1| tyrosine recombinase XerD [Bacteroides sp. 20_3] gi|300829545|gb|EFK60201.1| tyrosine recombinase XerD [Bacteroides sp. 20_3] Length = 314 Score = 125 bits (314), Expect = 9e-27, Method: Composition-based stats. Identities = 36/311 (11%), Positives = 99/311 (31%), Gaps = 38/311 (12%) Query: 67 KPTTLKWLISEYRKSAHW-GSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRS 121 + T ++ +IS++ + +L + ++ S I + +++ +++ Sbjct: 5 RKTAVEQVISDFLFHCQYEKNLNEKTIYAYRSDLYMFNRYIHELYPSVVFEQVSKDMLKT 64 Query: 122 GVESRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-GIRPWTKEDM 179 ++ + P + + L S++ LF + + +NP + ++ T ++ Sbjct: 65 YLQHISTYKPKTVKRKLASLKALFNYYDFEHDDFLNPFRKLRIRFKEPYVLPTVMTCNEV 124 Query: 180 QQFK---------------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 ++ + ++ E L +G+R S+ C + +I Sbjct: 125 KEILKYLYKLRADNPDTGGYAYKAQTRDIAVVELLFATGIRVSELCELSCDAVDLKQATI 184 Query: 225 KTQKT--GTIITVELPDGFMKLLAMTPIGKETFFINNDK---QKMNATQFSIWFKAKATK 279 K + +K+L ++++ + K + Sbjct: 185 KVFGKGSKERVIQICSVEVLKILRQYQRLFAPSKCFFINRLGNRLSSQSVRLLIKRCREE 244 Query: 280 AGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 G+ + H R AT+ + + G ++ + YT N Sbjct: 245 IGIGKKITPHTFRHTFATLLLEEDVDIKYIQNLLGHSSITTTQIYTHV---------NMN 295 Query: 338 RISSVVDSDDP 348 + ++ S P Sbjct: 296 KQKKILSSKHP 306 >gi|255022087|ref|ZP_05294091.1| prophage integrase [Acidithiobacillus caldus ATCC 51756] gi|254968445|gb|EET26003.1| prophage integrase [Acidithiobacillus caldus ATCC 51756] Length = 341 Score = 125 bits (314), Expect = 9e-27, Method: Composition-based stats. Identities = 45/317 (14%), Positives = 99/317 (31%), Gaps = 20/317 (6%) Query: 17 RHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 + GK + + R R + L ++ + T Sbjct: 4 KRGKTWWVDFVDASGQRVRRSAGTTDKAAAQELHDQLRAEAWRQSKL--GEAPARTWDEA 61 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--SRKHTPSS 132 + + + E + + + I+ + IR +E ++ + S+ Sbjct: 62 ALRWLEEKTHK----ATLEKDEQQLEWLHPYLSGKKLKDISWETIRGILEIKKKETSAST 117 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 A +L +R + + A + ++ + P K + R T+E+ + Sbjct: 118 ANHYLALIRGILRRANKWGWLEVLPSFEPYPVKNQRL--RWLTQEEAARLLQ--ELPPHL 173 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----TIITVELPDGFMKLLAMT 248 EF L +GLR S+ + I V L + +++L Sbjct: 174 ASMAEFSLLTGLRQSNVTGLEWSQVDMQRRCAWIHPDQAKARKPIPVSLNEQAVQVLLRQ 233 Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHEL 307 + + + + ++ +AG+ + + HG+R A+ AG L Sbjct: 234 IGKHPRYVFTYKGRPVTQVT-TKAWRNALQRAGIEDFTWHGLRHTWASWHVQAGTPLLVL 292 Query: 308 MATYGWKTVDQAETYTK 324 GW ++D + Y Sbjct: 293 QQMGGWASLDMVQRYAH 309 >gi|226306747|ref|YP_002766707.1| tyrosine recombinase XerD [Rhodococcus erythropolis PR4] gi|226185864|dbj|BAH33968.1| tyrosine recombinase XerD [Rhodococcus erythropolis PR4] Length = 307 Score = 125 bits (314), Expect = 9e-27, Method: Composition-based stats. Identities = 45/283 (15%), Positives = 90/283 (31%), Gaps = 34/283 (12%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHT- 129 + Y A N+ +S+ ++ G D +T + V + Sbjct: 6 VDSYLDHLAVERGSARNTLLSYRRDLNRYAEYLDGRGIDDVAGVTENDVTEFVTHLRLGD 65 Query: 130 ---------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 SSA + L ++R K++ + V ++ +V+ P + + +D+ Sbjct: 66 KDAGVLPLAASSAARTLIAVRGFHKFSAAEGLVGVDVARTVKPPTPGRKLPKALPLDDVI 125 Query: 181 QFKSFW--------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGT 231 + R E L +G R +++ V + S+ K G Sbjct: 126 ALLDASGGGAAGDGPRDLRDRALLELLYSTGARITEAIDLDVDDIDTETRSVLLKGKGGK 185 Query: 232 IITVELPDGFMKLLAMTPIGKETF---------FINNDKQKMNATQFSIWFKAKATKAGV 282 V + + + + F+N +++ + A AG+ Sbjct: 186 QRIVPVGRPAIAAVDAYLVRGRPSLATRGVPALFLNARGGRLSRQSAWQILQDAAASAGI 245 Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + S H +R AT D GA + G +V + YT Sbjct: 246 KADVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYT 288 >gi|183602476|ref|ZP_02963842.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis subsp. lactis HN019] gi|241191170|ref|YP_002968564.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196576|ref|YP_002970131.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218395|gb|EDT89040.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis subsp. lactis HN019] gi|240249562|gb|ACS46502.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis subsp. lactis Bl-04] gi|240251130|gb|ACS48069.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289177279|gb|ADC84525.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium animalis subsp. lactis BB-12] gi|295794163|gb|ADG33698.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis subsp. lactis V9] Length = 311 Score = 125 bits (314), Expect = 9e-27, Method: Composition-based stats. Identities = 44/302 (14%), Positives = 95/302 (31%), Gaps = 43/302 (14%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGVESRKHT 129 L+ + + L+ ++ +++ Q + G + +T +R + HT Sbjct: 6 LMERFIEYLRSNRGLSEHTCMAYRGDILQCLEALDAFGRGNPDDVTLDDLRMWMGRMAHT 65 Query: 130 --PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED--------- 178 +S + ++R F WA +A NP ++ PK ++ Sbjct: 66 VGKTSLARKTIAVRSFFTWAYEHGMLAHNPAHALRTPKIDRNLPAVLNEDQAERLMDTVD 125 Query: 179 -----------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT- 226 + ++ + E L +G+R + + + +++ Sbjct: 126 AEAGEKNAGKSKDDALNAHAKALRDCAMLELLYATGMRVGELVGLDMGSFDWSNRTVRVL 185 Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK----------QKMNATQFSIWFKAK 276 K + + + G F N + +++ + Sbjct: 186 GKGNKTRVIPFGAPAQQAVEHWLHGGRPVFANGNSGNAVFIGVRGCRIDQRVVRQVVHEQ 245 Query: 277 ATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-----DRIR 330 A +AGV S H +R +AT D GA E+ G ++ + Y + DR R Sbjct: 246 AEQAGVPDISPHALRHSAATHMLDGGADLREVQEMLGHSSLQTTQRYAHVSIEQLKDRYR 305 Query: 331 LG 332 Sbjct: 306 QA 307 >gi|104774158|ref|YP_619138.1| site-specific recombinase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116514251|ref|YP_813157.1| integrase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|122275017|sp|Q04A03|XERC_LACDB RecName: Full=Tyrosine recombinase xerC gi|123378433|sp|Q1G9V2|XERC_LACDA RecName: Full=Tyrosine recombinase xerC gi|103423239|emb|CAI98072.1| Site-specific recombinase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116093566|gb|ABJ58719.1| tyrosine recombinase XerC subunit [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 295 Score = 125 bits (314), Expect = 9e-27, Method: Composition-based stats. Identities = 42/298 (14%), Positives = 109/298 (36%), Gaps = 27/298 (9%) Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFD-YRKITTKHIRSGVE 124 TL+ Y K+ S + + ++++ + +++G F + +I+ + + + Sbjct: 1 MTLEEQFLSYLKNE--RSYSPKTVLAYQKDLAAAKKFWQENGGFPGWDQISRRDLEIYLL 58 Query: 125 SRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + S+ + L+S++ +++ R+ V +P ++++ + K + + ++++ Q Sbjct: 59 ATGQKLASSTLSRKLSSLKSFYRFLTRRGLVKADPTVAIQLRRGKKKLPEFFYQDEVGQV 118 Query: 183 KSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVEL 237 ++G + R +G+R S+ ++ L I K V Sbjct: 119 IRSLNDGKPLTVRNRAIVALFYATGMRLSELTDLKIKQLDLENGMILVHGKGNKDRYVFF 178 Query: 238 PDGFMKLLAMTPIGKET-----------FFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284 K L F+N + +++ + + KAG+ Sbjct: 179 DQESKKYLEEYLQAARPSLLKNEPDTGAVFLNKLGRPISSRGIAKAVQQIFQKAGLTAGA 238 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342 H +R AT + GA + G + + + YT + + L ++ + Sbjct: 239 HPHELRHSFATAMLNNGADLRSVQELLGHEDLSTTQIYTHVSMQ-HLTVEYRQHFPRK 295 >gi|330685662|gb|EGG97303.1| tyrosine recombinase XerC [Staphylococcus epidermidis VCU121] Length = 297 Score = 125 bits (314), Expect = 9e-27, Method: Composition-based stats. Identities = 37/265 (13%), Positives = 94/265 (35%), Gaps = 20/265 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTS 139 + + ++ S+ Q D K R+ + S+ ++ + +++ Sbjct: 16 RNFSDHTLKSYRDDIVQFNDFLYQESLDLNDFEYKDARNYLSFLYSKNLKRTTVSRKIST 75 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPRLA 195 +R +++ + Q+ +NP + + PK++ + + +E+M + ++ +G + ++ Sbjct: 76 LRTFYEYWMTQDESVVNPFVQLVHPKKEQYLPQFFYEEEMEALFKTVETDSKKGMRDKVI 135 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLAMT------ 248 E L +G+R S+ Q L K + + + + Sbjct: 136 LELLYATGIRVSELVHIKTQDLDMKLPGVKVLGKGNKERFIPFGEFCKQSIERYLKEFKP 195 Query: 249 --PIGKETFFINNDKQKMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGATA 304 + + +N Q + + +GV N H +R AT + GA Sbjct: 196 LKHVDHDYLIVNMQGQPITERGVRYVLNDVVKRTSGVTNIHPHKLRHTFATHLLNQGADL 255 Query: 305 HELMATYGWKTVDQAETYTKGADRI 329 + + G + YT +++ Sbjct: 256 RTVQSLLGHVNLSTTGKYTHVSNQQ 280 >gi|297621664|ref|YP_003709801.1| Site-specific tyrosine recombinase XerC [Waddlia chondrophila WSU 86-1044] gi|297376965|gb|ADI38795.1| Site-specific tyrosine recombinase XerC [Waddlia chondrophila WSU 86-1044] Length = 301 Score = 125 bits (314), Expect = 9e-27, Method: Composition-based stats. Identities = 44/267 (16%), Positives = 91/267 (34%), Gaps = 26/267 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSG-------DFDYRKITTKHIR---SGVESRKHTPSSAI 134 + + ++ ++ + + DF +I + IR + + S+ + + + Sbjct: 19 KNASEHTIRNYAIDLNIFKQHLEQEWQSDEDFALNRIERRQIRGFLAMMNSKGASKRTIL 78 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ----FKSFWSEGS 190 + L+S+R FKWA + + NP +E PK + P + ++ + GS Sbjct: 79 RRLSSLRTFFKWAFANQLITSNPIEEIESPKLEKTIPTPLSYTQVEHLFSLPEIETLLGS 138 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLAMTP 249 + R E SGLR S+ + K + + + + Sbjct: 139 RDRCMMELFYSSGLRVSELVGLNKNDVDITTRLMKVRGKGKKERVIPVTHNAVYWIQKYL 198 Query: 250 IGKETFFINNDKQ---------KMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISA 298 E F + +++ FK K+G+ N + H +R AT Sbjct: 199 RHPERKFSCEENHAIFLNKLGTRLSVRSVDRNFKRYLIKSGLGGNVTPHTIRHTIATHWL 258 Query: 299 DAGATAHELMATYGWKTVDQAETYTKG 325 + G + G +++ YT Sbjct: 259 ENGMDLKTIQTLLGHESLSSTTIYTHV 285 >gi|121608682|ref|YP_996489.1| tyrosine recombinase XerD [Verminephrobacter eiseniae EF01-2] gi|121553322|gb|ABM57471.1| tyrosine recombinase XerD [Verminephrobacter eiseniae EF01-2] Length = 303 Score = 125 bits (314), Expect = 9e-27, Method: Composition-based stats. Identities = 48/281 (17%), Positives = 91/281 (32%), Gaps = 24/281 (8%) Query: 73 WLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRK 127 I + + LA N+ ++ S + + H+++ +R Sbjct: 5 DAIDAFLDALWLEDGLARNTLAAYRSDLTRYAQWLHAQQPAVALDDTAEHHLQAYFAARH 64 Query: 128 --HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 +SA + LT +R F WA+R+ ++ +P + + + T+ ++ Sbjct: 65 AQTRATSANRRLTVLRRYFHWALRERRISADPTARLAAARVPLRVPKTMTETQVEALLQA 124 Query: 186 WSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDG 240 G+ + R E + SGLR ++ HL + ++ G + Sbjct: 125 PDPGTPLGLRDRAMLELMYASGLRVTELVGLKTFHLALDENLLRVTGKGGKERLLPFGVE 184 Query: 241 FMKLLAMTPIG----------KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHG 288 + L + F+ M F I K A AG+ S H Sbjct: 185 AGQWLERYLQQARGVILGGQRTDDLFVTRRGCGMTRVMFWIIVKQWARVAGITVPLSPHT 244 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R AT + GA + G + YT A + Sbjct: 245 LRHAFATHLLNHGADLRVVQLLLGHADISTTTIYTHVARQR 285 >gi|218530686|ref|YP_002421502.1| tyrosine recombinase XerD [Methylobacterium chloromethanicum CM4] gi|218522989|gb|ACK83574.1| tyrosine recombinase XerD [Methylobacterium chloromethanicum CM4] Length = 328 Score = 125 bits (314), Expect = 9e-27, Method: Composition-based stats. Identities = 45/273 (16%), Positives = 87/273 (31%), Gaps = 28/273 (10%) Query: 85 GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTS 139 A N+ ++ D + G D + + +R+ + S + SSA + L+ Sbjct: 27 RGAAANTLAAYRRDLDDYLGYLAQGGIDPEEAQAEQVRAYIASLEPRGLKASSAARRLSC 86 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----------- 188 +R ++ + Y +P V P+R + + ++ + + E Sbjct: 87 IRGFHRFLYAEGYSETDPTAPVAAPRRAKGLPKVLSVAEVDRLLATARERVEAAGDDRAE 146 Query: 189 ---GSQPRLAFEFLLYSGLRCSDSCR-AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 ++ E L +GLR S+ + + K G V L D + Sbjct: 147 ARAAARMLCLLELLYATGLRVSELVALPRSAAATRERYLVVKGKGGRERLVPLTDLAREA 206 Query: 245 LAMTPIG-----KETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATI 296 + F ++ + F+ K A AG+ S H +R A+ Sbjct: 207 MRTHVAHLTAEGAWLFPAESESGHLTRQAFARDLKTAAAAAGLRTDRVSPHVLRHAFASH 266 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRI 329 GA + G + + YT D Sbjct: 267 LLQNGADLRIVQELLGHADISTTQIYTHVLDER 299 >gi|30263996|ref|NP_846373.1| prophage LambdaBa02, site-specific recombinase phage integrase family protein protein [Bacillus anthracis str. Ames] gi|47778252|ref|YP_020778.2| prophage lambdaba02, site-specific recombinase phage integrase family protein protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49186834|ref|YP_030086.1| prophage LambdaBa02, site-specific recombinase phage integrase family protein protein [Bacillus anthracis str. Sterne] gi|65321318|ref|ZP_00394277.1| COG0582: Integrase [Bacillus anthracis str. A2012] gi|165872111|ref|ZP_02216750.1| prophage LambdaBa02, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0488] gi|167633704|ref|ZP_02392028.1| prophage LambdaBa02, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0442] gi|167641018|ref|ZP_02399275.1| prophage LambdaBa02, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0193] gi|170688722|ref|ZP_02879926.1| prophage LambdaBa02, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0465] gi|170705756|ref|ZP_02896219.1| prophage LambdaBa02, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0389] gi|190565741|ref|ZP_03018660.1| prophage LambdaBa02, site-specific recombinase, phage integrase family [Bacillus anthracis Tsiankovskii-I] gi|227816697|ref|YP_002816706.1| prophage LambdaBa02, site-specific recombinase, phage integrase family [Bacillus anthracis str. CDC 684] gi|229604530|ref|YP_002868225.1| prophage LambdaBa02, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0248] gi|254683690|ref|ZP_05147550.1| prophage LambdaBa02, site-specific recombinase, phage integrase family protein [Bacillus anthracis str. CNEVA-9066] gi|254721526|ref|ZP_05183315.1| prophage LambdaBa02, site-specific recombinase, phage integrase family protein [Bacillus anthracis str. A1055] gi|254736035|ref|ZP_05193741.1| prophage LambdaBa02, site-specific recombinase, phage integrase family protein [Bacillus anthracis str. Western North America USA6153] gi|254743926|ref|ZP_05201609.1| prophage LambdaBa02, site-specific recombinase, phage integrase family protein [Bacillus anthracis str. Kruger B] gi|254754295|ref|ZP_05206330.1| prophage LambdaBa02, site-specific recombinase, phage integrase family protein [Bacillus anthracis str. Vollum] gi|254758014|ref|ZP_05210041.1| prophage LambdaBa02, site-specific recombinase, phage integrase family protein [Bacillus anthracis str. Australia 94] gi|30258640|gb|AAP27859.1| prophage LambdaBa02, site-specific recombinase, phage integrase family [Bacillus anthracis str. Ames] gi|47551957|gb|AAT33253.2| prophage LambdaBa02, site-specific recombinase, phage integrase family [Bacillus anthracis str. 'Ames Ancestor'] gi|49180761|gb|AAT56137.1| prophage LambdaBa02, site-specific recombinase, phage integrase family [Bacillus anthracis str. Sterne] gi|164712058|gb|EDR17596.1| prophage LambdaBa02, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0488] gi|167511068|gb|EDR86457.1| prophage LambdaBa02, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0193] gi|167531110|gb|EDR93797.1| prophage LambdaBa02, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0442] gi|170129296|gb|EDS98160.1| prophage LambdaBa02, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0389] gi|170667238|gb|EDT17997.1| prophage LambdaBa02, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0465] gi|190562660|gb|EDV16626.1| prophage LambdaBa02, site-specific recombinase, phage integrase family [Bacillus anthracis Tsiankovskii-I] gi|227005467|gb|ACP15210.1| prophage LambdaBa02, site-specific recombinase, phage integrase family [Bacillus anthracis str. CDC 684] gi|229268938|gb|ACQ50575.1| prophage LambdaBa02, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0248] Length = 376 Score = 125 bits (314), Expect = 9e-27, Method: Composition-based stats. Identities = 49/332 (14%), Positives = 103/332 (31%), Gaps = 32/332 (9%) Query: 27 KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS 86 G ++I ++ +T +Y NS + L+ + + S Sbjct: 23 TGKRKQITKGGFKTKKAAQEEVARVTNDLANGDYENSDIR----FSQLVEIWTQEKE-SS 77 Query: 87 LAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS---MRV 142 ++ ++ +++ + G+ I + + + + + ++ Sbjct: 78 CRPSTLYQYKRILRSRVMPEFGEKRLSDIKPLSVHNFHQKLLKEGLTTKYISSVDVMLKQ 137 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202 + V E + NP +RPK K + WT E+ +F + +AF L++ Sbjct: 138 ILDKGVELEMINSNPAKKAKRPKVKKKAQASWTVEEAMKFMEYAKIQGSYYIAFVLALHT 197 Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKT-----------------GTIITVELPDGFMKLL 245 G+R + + + I Q+T + + +LL Sbjct: 198 GMRIGEVLALQWKDINFESKVIHVQRTLTLVDGKYELGETKTEASNRMIPMTQELMRELL 257 Query: 246 AMTPIGKETFFINNDKQKM----NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300 K+ F + + KA V H +R+ TI D+ Sbjct: 258 EYQSHKKDNSFDLLICTRNKKIVHPYTIRYQMKALCEAIDVPYIRFHDIRRTFTTILIDS 317 Query: 301 GATAHELMATYGWKTVDQA-ETYTKGADRIRL 331 GA A + G V YT + ++ Sbjct: 318 GANAKVVSKLLGHTNVSTTLNIYTDVYEERQI 349 >gi|241761139|ref|ZP_04759228.1| integrase family protein [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241374758|gb|EER64219.1| integrase family protein [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 307 Score = 125 bits (314), Expect = 9e-27, Method: Composition-based stats. Identities = 42/294 (14%), Positives = 96/294 (32%), Gaps = 26/294 (8%) Query: 72 KWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 + LI + + + N+ +++ S ++ + + T GV + Sbjct: 14 ESLILRFLEMMAAESGSSPNTLMAYGSDLRLASQQLENGLVKADTDDLASLGVVWSDYAR 73 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE---------DMQQ 181 ++ + +++ +++ + + +P S+ + T + Sbjct: 74 NTVARKSAALKHFYRFLLEEGMRTDDPSSSLPHAGISRNLPKILTTAEVERLFVTLQQRY 133 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCR-AGVQHLQNNIFSIKTQKTGTIITVELPDG 240 ++ + E L SGLR S+ ++ F I K G V + D Sbjct: 134 ERAATPSTLRLMALVELLYGSGLRASELVSLPKQAFIRKQPFLILKGKGGRERLVPISDR 193 Query: 241 FMKLLAMTPIGKET---FFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSA 294 +A + + + K ++ + K A +A + + S H +R A Sbjct: 194 ATDAVAAWLVHVPEKSLWLFPSGKGHISRIRLYQLIKELAVEADLPRERVSPHVLRHAFA 253 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 T + GA L G + + YT + ++ +V+S P Sbjct: 254 THLLEGGADLRVLQLLLGHADISTTQIYTHVDSQ---------KLVELVNSRHP 298 >gi|163791334|ref|ZP_02185747.1| site-specific recombinase, phage integrase family protein [Carnobacterium sp. AT7] gi|159873413|gb|EDP67504.1| site-specific recombinase, phage integrase family protein [Carnobacterium sp. AT7] Length = 299 Score = 125 bits (314), Expect = 9e-27, Method: Composition-based stats. Identities = 36/288 (12%), Positives = 93/288 (32%), Gaps = 27/288 (9%) Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGV 123 T K + +Y + + ++ ++E GD ++ +T + +R + Sbjct: 2 VDQTAKTIFLQYLITE--RHYSELTKKAYEEDITHFESFLNQTGDTNFSNVTLQDVRIYL 59 Query: 124 ---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + + +S + ++SMR +++ ++ + V NP + K+ + + +++M Sbjct: 60 GELNEQGLSRNSISRKISSMRAFYQFLLKNQLVEDNPFSYIHLKKKTLRLPKFFYEKEMD 119 Query: 181 QFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITV 235 + E L +G+R S+ ++ + ++ + K V Sbjct: 120 ALFEAVKGEKPLDFRNEAILEILYGTGIRVSECSGIQLKDIDFDLSVLLIHGKGNKERYV 179 Query: 236 ELPDGFMKLLAMTPIGKETFFI------------NNDKQKMNATQFSIWFKAKATKAGV- 282 + T + N+ + +T K+ + Sbjct: 180 PFGHYAAVAMRDYMEKSRTPLMAKYKKSHDLLFVNHHGDPITSTGIEYVLNQVIKKSSLT 239 Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + H +R AT + GA + G ++ + Y Sbjct: 240 SDIHPHMLRHSFATHLLNNGADMRTVQELLGHASLSSTQIYAHVTKER 287 >gi|254466182|ref|ZP_05079593.1| tyrosine recombinase XerC [Rhodobacterales bacterium Y4I] gi|206687090|gb|EDZ47572.1| tyrosine recombinase XerC [Rhodobacterales bacterium Y4I] Length = 306 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 40/294 (13%), Positives = 84/294 (28%), Gaps = 29/294 (9%) Query: 72 KWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSG 122 + + + + + N+ ++ + G +ITT +R+ Sbjct: 9 RDALQLWLERLGGLEDASANTLAAYRGDVTAFLAFMTQHFGGPQGLGALARITTADMRAW 68 Query: 123 VESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + S +++ + A + L++++ ++W ++E L PK + + RP E Sbjct: 69 MASERNSGTGARSLARKLSAVKTFYRWLAKREGFEPAAVLLARAPKFQKKLPRPLAPEAA 128 Query: 180 QQFKSF-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 + ++ L GLR S++ K Sbjct: 129 KAVLEAVELQSETDWVAARDVAVVTLLYGCGLRISEALGLKGADAPLPQVLRILGKGRKE 188 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKM-------NATQFSIWFKAKATKAGVNKS 285 V + + N Q + G+ + Sbjct: 189 RVVPVLPAARAAVDRYLELCPHPQERAAPLFRGVRGGALNPRQIQGVMAKTRAQLGLPAT 248 Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 H +R AT +AG + G ++ +TYT D L R Sbjct: 249 ATPHALRHSFATHLLEAGGDLRAIQELLGHASLSTTQTYT-AVDTTHLMDVYMR 301 >gi|300714802|ref|YP_003739605.1| Tyrosine recombinase XerC [Erwinia billingiae Eb661] gi|299060638|emb|CAX57745.1| Tyrosine recombinase XerC [Erwinia billingiae Eb661] Length = 302 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 41/279 (14%), Positives = 91/279 (32%), Gaps = 21/279 (7%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIR---SGVESR 126 + + + L+ ++I+++ + + K+ +R + Sbjct: 10 AVEGFLRYLKVERQLSPLTQINYQRQLAACLALLTEMKLTAWDKLDAAQVRSLAARSRRG 69 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 P+S L+++R W + Q + NP V P+ + +++ Q Sbjct: 70 GLKPASLALRLSALRSFLDWQISQGVLKANPAKGVATPRAPRHLPKNIDVDEVSQLLDID 129 Query: 187 SEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIIT-------V 235 + R E + +GLR S+ HL + K V Sbjct: 130 LNDPLAVRDRAMLEIMYGAGLRLSELVGIDTGHLDLASGEVWVVGKGSKERRLPIGRTAV 189 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293 + + ++++ + + F++ ++M+A F K GV + H +R Sbjct: 190 QWMEHWLEMRELFAPEDQAVFLSKYGKRMSARNVQKRFAEWGAKQGVSSHIHPHKLRHSF 249 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 AT ++ + G + + YT D L Sbjct: 250 ATHMLESSGDLRAVQELLGHANLSTTQIYTH-LDFQHLA 287 >gi|157265299|ref|YP_001467858.1| XerD-like integrase [Thermus phage P23-45] gi|156905194|gb|ABU96838.1| XerD-like integrase [Thermus phage P23-45] Length = 327 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 50/284 (17%), Positives = 99/284 (34%), Gaps = 14/284 (4%) Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 + + T++ + E+ K + +ES ++++ + +T + Sbjct: 33 WSYREGEAMTIEQALKEFLKEKRLEGKREKTLRWYESTVRYLLKEHLNKPLDALTRNLVV 92 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 ++ P++ + ++R W + EY+ NP +RPK + T ++++ Sbjct: 93 EVLDK-PVAPATLANYDRALRGFVNWLIGVEYLEHNPFKGRKRPKEEFYLKDVLTLDEIK 151 Query: 181 QFKSFWSEGSQPRL----AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ----KTGTI 232 + R L SGLR ++ CR V + + +++ Sbjct: 152 ALFKAAMRDPRYRYRNASILALALGSGLRAAEICRLQVADILWDEMAVRVHGKTGHGVVP 211 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVR 290 +T E L + + + + + S W K +A AG+NK H +R Sbjct: 212 VTRETLRYLRLYLDRERKATSPYLFVHRNRPLTSEVLSHWIKRQAKVAGINKKVGMHLLR 271 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK--GAD-RIRL 331 AT +G L K+ Y AD R RL Sbjct: 272 HTFATNYLKSGGDPFTLQRILRHKSPAMTSRYLHFLTADLRERL 315 >gi|157159369|ref|YP_001465295.1| site-specific tyrosine recombinase XerC [Escherichia coli E24377A] gi|218556374|ref|YP_002389288.1| site-specific tyrosine recombinase XerC [Escherichia coli IAI1] gi|300923315|ref|ZP_07139363.1| tyrosine recombinase XerC [Escherichia coli MS 182-1] gi|301328427|ref|ZP_07221508.1| tyrosine recombinase XerC [Escherichia coli MS 78-1] gi|166918883|sp|A7ZU16|XERC_ECO24 RecName: Full=Tyrosine recombinase xerC gi|254799337|sp|B7M613|XERC_ECO8A RecName: Full=Tyrosine recombinase xerC gi|157081399|gb|ABV21107.1| tyrosine recombinase XerC [Escherichia coli E24377A] gi|218363143|emb|CAR00784.1| site-specific tyrosine recombinase [Escherichia coli IAI1] gi|300420401|gb|EFK03712.1| tyrosine recombinase XerC [Escherichia coli MS 182-1] gi|300845137|gb|EFK72897.1| tyrosine recombinase XerC [Escherichia coli MS 78-1] Length = 298 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 42/278 (15%), Positives = 90/278 (32%), Gaps = 21/278 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SRK 127 + Y + L+ + ++++ + II + + + + + Sbjct: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTVVRNFAVRSRRKG 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +S L+++R F W V Q + NP V PK + +DM + Sbjct: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI 127 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243 + R E + +GLR S+ ++HL + K + + + Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187 Query: 244 LLAMTPIGKETFFINND-------KQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 + ++ F +D ++++A F K G+ + H +R A Sbjct: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 T ++ + G + + YT D L Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 284 >gi|260556505|ref|ZP_05828723.1| tyrosine recombinase XerC [Acinetobacter baumannii ATCC 19606] gi|260409764|gb|EEX03064.1| tyrosine recombinase XerC [Acinetobacter baumannii ATCC 19606] Length = 308 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 45/279 (16%), Positives = 90/279 (32%), Gaps = 27/279 (9%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRK--SGDFDYRKITTKHIRSGVESR---- 126 L+S + K + + ++ ++E + D R + +R + R Sbjct: 10 QLLSMWLKERKIQNQSEHTITAYERDVKSFLEFCELKKVDLRNVEASDLREYLAQRVEQD 69 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + + SS + LTS+R KWA + +Y+ INP + ++ E + Q Sbjct: 70 QLSSSSMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILDQP 129 Query: 187 SEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVEL 237 + + E L SGLR ++ ++ + N ++ V Sbjct: 130 MPEKPIDQQLWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKGNKTRIVPF 189 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAGV--NKS 285 + L + + D+ Q K +A +AGV + Sbjct: 190 GKKAKESLLNWLKIYNIWKGHFDQNAPVFISQRGGALTPRQIEKRVKLQAQRAGVNVDLH 249 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R A+ + + G + + YT Sbjct: 250 PHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTH 288 >gi|78049232|ref|YP_365407.1| site-specific tyrosine recombinase XerD [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78037662|emb|CAJ25407.1| integrase-recombinase XerD [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 323 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 45/312 (14%), Positives = 99/312 (31%), Gaps = 37/312 (11%) Query: 46 AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK 105 A L P + ++ ++ + + +A + S+ + + R Sbjct: 7 AERRQLARQLPPVQAADASV-----IERFLDRFWAE---QGVARQTLESYRRDLEGLARW 58 Query: 106 S-----GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 G + ++P S + L+++R + +R + +P Sbjct: 59 RDGAHGGLLGIDRAALFDYLRWRTQANYSPRSTARLLSTLRAFYGLCLRDGVRSDDPTTL 118 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQH 216 ++ P+ + T+ ++ + + + R E + +GLR S+ Sbjct: 119 IDPPQLPRSLPKALTESQIEALLAAPDVDTPAGLRNRAMLELMYAAGLRVSELVNLPAVG 178 Query: 217 LQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIG----------------KETFFINN 259 + ++ V L + L + FI+ Sbjct: 179 VNLRQGVLRVTGKGSKDRLVPLGEESQHWLERYLREARPLLAANKPVAAVDGQVPLFIDA 238 Query: 260 DKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTV 316 ++ ++ QF K A AG++ S HG+R AT + GA L G ++ Sbjct: 239 ARRPLSRQQFWALVKRYAAVAGIDPDTVSPHGLRHSFATHLLNHGADLRALQMLLGHSSL 298 Query: 317 DQAETYTKGADR 328 + YT A + Sbjct: 299 STTQIYTLVARQ 310 >gi|89074452|ref|ZP_01160929.1| tyrosine recombinase [Photobacterium sp. SKA34] gi|89049740|gb|EAR55290.1| tyrosine recombinase [Photobacterium sp. SKA34] Length = 302 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 39/286 (13%), Positives = 96/286 (33%), Gaps = 22/286 (7%) Query: 68 PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR---KITTKHIRSGV 123 P +L+ + + + L+++++ +++ +I + + ++ +R Sbjct: 3 PRSLEQPLERFYEYLRSERELSLHTQQNYKRQLTRIAEQLVELSVDNWQQVDAGWVRQIA 62 Query: 124 ---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 SS L+++R F + V Q + NP V P++ + ++M Sbjct: 63 SKGMRDGLKASSLAMRLSALRSFFDFLVHQNVLKANPAKGVAAPRKARPLPKNLDVDEMN 122 Query: 181 QFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236 Q + + R E + +GLR ++ V+H+ + ++ V Sbjct: 123 QLLDVNDDDPLAIRDRAMMELMYGAGLRLAELVGIDVRHISLSKGDLRVIGKGDKERVVP 182 Query: 237 LPDGFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 + +A ++ F++ +++ K V + + Sbjct: 183 FSGLAREWVAKWLKLRDNIALAEEPALFVSKLGTRISTRNVQKRMAEWGQKQAVSSHINP 242 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R AT ++ + G + + YT D L Sbjct: 243 HKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTH-LDFQHLA 287 >gi|314948558|ref|ZP_07851938.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0082] gi|313645055|gb|EFS09635.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0082] Length = 382 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 57/369 (15%), Positives = 110/369 (29%), Gaps = 52/369 (14%) Query: 11 VTKERTRHGKIIYYFRK--------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62 + + + ++G+ +YF+ G + AL+ + + Sbjct: 4 IKQYKKKNGEKAWYFKTYLGIDPLTGKKKYTTKRGFRTQKEAKT---ALSRLELELQKTG 60 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122 P TT K + +S + + + I K G+ KI T + + Sbjct: 61 MPTSTNTTFKEAAELWLESYKKTVKESSYSRTKIIFNKHIYPKFGNIKLSKINTAYCQKV 120 Query: 123 VESRKHTPSSAIQ--FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 V SS F+ M +FK+A+ + NP L++ PK + + + + Sbjct: 121 VNDWSEKGSSKQYPLFVNYMNKVFKYAINIGLTSDNPTLNLIIPKPQIKTDKKLKLYTKE 180 Query: 181 Q---------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 Q + ++ F L +SG R + ++ + +KT Sbjct: 181 QLELFLNEVSQEQNPYFKNRDYTLFRLLAFSGCRIGEILALTWDNINFKTNEMAIKKTVA 240 Query: 232 IITVE---------------------------LPDGFMKLLAMTPIGKETFFINNDKQKM 264 K L K + ND+ Sbjct: 241 RSDKYYISETPKTKKSNRIIYLDEKTIKQLKFWKLEQRKYLFQLGFTKANYLFTNDENNF 300 Query: 265 NAT-QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-T 321 + + +AG+ HG R A++ +AGA E+ G + T Sbjct: 301 TINQSVAERYNIYRERAGLPYIGLHGFRHTHASMLYEAGADHKEVQERMGHANIKTTMDT 360 Query: 322 YTKGADRIR 330 YT + + Sbjct: 361 YTHITNSKK 369 >gi|256371915|ref|YP_003109739.1| integrase family protein [Acidimicrobium ferrooxidans DSM 10331] gi|256008499|gb|ACU54066.1| integrase family protein [Acidimicrobium ferrooxidans DSM 10331] Length = 299 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 46/275 (16%), Positives = 99/275 (36%), Gaps = 19/275 (6%) Query: 72 KWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVES--R 126 + ++ EY + + I++ S + + + +RS V++ R Sbjct: 6 EAVVDEYLTLLVVAADRSELTAIAYRSDLEAVATWLEARGSRLLDASPALLRSWVDAAGR 65 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK--- 183 + +P + +++R LF++A R A +P + P R ++++++ Sbjct: 66 ERSPRGVQRAASALRGLFRYAQRVGARADDPMEGIHAPGTAVALPRALARDEVERLIESV 125 Query: 184 -SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242 + G++ R E L SG+R S+ C + + + K G V + Sbjct: 126 GTADVAGARDRAILEVLYGSGVRVSELCGFTLDTIAQGRWVPVVGKRGRERLVPISAPAR 185 Query: 243 KLLAMTPIGKETFFINNDKQ--------KMNATQFSIWFKAKATKAGV--NKSAHGVRKF 292 L + + + + K +A++ G+ S H +R Sbjct: 186 DALEQWVVRWRPQLAPKHRMLFVNLRGAPITRQGVWLVLKQRASRVGLGDRVSPHVLRHS 245 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 A +AGA + G ++ E YTK ++ Sbjct: 246 LAVHMVEAGADLRVVQEILGHASLATTELYTKVSE 280 >gi|193078105|gb|ABO13046.2| site-specific tyrosine recombinase [Acinetobacter baumannii ATCC 17978] Length = 308 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 44/279 (15%), Positives = 90/279 (32%), Gaps = 27/279 (9%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRK--SGDFDYRKITTKHIRSGVESR---- 126 L+S + K + + ++ +++ + D R + +R + R Sbjct: 10 QLLSMWLKERKIQNQSEHTITAYKRDVKSFLEFCELKKVDLRNVEASDLREYLAQRVEQD 69 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + + SS + LTS+R KWA + +Y+ INP + ++ E + Q Sbjct: 70 QLSSSSMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIEMVNQILDQP 129 Query: 187 SEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVEL 237 + + E L SGLR ++ ++ + N ++ V Sbjct: 130 MPEKPVDQQLWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKGNKTRIVPF 189 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAGV--NKS 285 + L + + D+ Q K +A +AGV + Sbjct: 190 GKKAKESLLNWLKIYNIWKGHFDQNASVFISQRGGALTPRQIEKRVKLQAQRAGVNVDLH 249 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R A+ + + G + + YT Sbjct: 250 PHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTH 288 >gi|315444421|ref|YP_004077300.1| tyrosine recombinase XerD subunit [Mycobacterium sp. Spyr1] gi|315262724|gb|ADT99465.1| tyrosine recombinase XerD subunit [Mycobacterium sp. Spyr1] Length = 320 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 46/282 (16%), Positives = 91/282 (32%), Gaps = 36/282 (12%) Query: 78 YRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKH----- 128 Y +A N+ S+ + G D +T + + + + Sbjct: 20 YLDHLAIERGVAANTLSSYRRDLRRYAEHLKARGVGDLAAVTETDVSEFLVALRLGDPDG 79 Query: 129 -----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + SA + L ++R L ++A + AI+ V+ P + + +++ Sbjct: 80 GVVPLSAVSAARALIAVRGLHRFAAAEGIAAIDVARDVKPPTPSRRLPKSLSIDEVLALL 139 Query: 184 SFWSEGS--------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIIT 234 S + R E L +G R S++ + + + S+ K G Sbjct: 140 EAAGGDSEADSPLTLRNRALLELLYSTGARISEAVGLDIDDVDTSARSVLLRGKGGKQRL 199 Query: 235 VELPDGFMKLLAMTPIGKETF-----------FINNDKQKMNATQFSIWFKAKATKAGVN 283 + + + L + F+N +++ + A +AGV Sbjct: 200 IPIGRPAVTALETYLVRGRPDLARRGRGTPAIFLNARGGRLSRQSAWQVLQDAAGRAGVT 259 Query: 284 --KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 S H +R AT D GA + G +V + YT Sbjct: 260 ATVSPHVLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYT 301 >gi|91204992|ref|YP_537347.1| site-specific tyrosine recombinase XerC [Rickettsia bellii RML369-C] gi|122990944|sp|Q1RK56|XERC_RICBR RecName: Full=Tyrosine recombinase xerC gi|91068536|gb|ABE04258.1| Tyrosine recombinase XerC [Rickettsia bellii RML369-C] Length = 305 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 44/284 (15%), Positives = 102/284 (35%), Gaps = 28/284 (9%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129 ++ LI +++K + + ++ IS+ + + ++ +T +I++ + Sbjct: 6 IQELIIKWQKYLSLQKNYSNHTLISYNNDLKHFLEFMNYYNSDIVTMDYIKAADIRLMRS 65 Query: 130 P-----------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 SS + L++++ +K+ + + + S++ PK+ + ++E+ Sbjct: 66 WLAKRKCDNFVTSSIARGLSAIKNFYKFLEKTAELHNHVVFSIKSPKKSKLLPKALSEEE 125 Query: 179 MQQFKSF-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 + + + + SGLR S++ HLQN F K Sbjct: 126 VNISLDHIEEYGNSQWIEIRNKALLVLIYASGLRISEALSITKLHLQNLEFIKIMGKGSK 185 Query: 232 IITVEL-------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN- 283 + +++ L E F +K+ F+ G+ Sbjct: 186 ERVIPWLAIARNLITEYLEKLPYELKDDEPIFRGKQGKKLQPPVFNRELIKLKRFYGLPE 245 Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 SAH R A+ + GA + G K++ ++YTK + Sbjct: 246 YLSAHSFRHSFASHLLENGADLRSIQELLGHKSLSTTQSYTKTS 289 >gi|261207379|ref|ZP_05922066.1| predicted protein [Enterococcus faecium TC 6] gi|289566793|ref|ZP_06447205.1| predicted protein [Enterococcus faecium D344SRF] gi|260078439|gb|EEW66143.1| predicted protein [Enterococcus faecium TC 6] gi|289161420|gb|EFD09308.1| predicted protein [Enterococcus faecium D344SRF] Length = 382 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 57/383 (14%), Positives = 118/383 (30%), Gaps = 54/383 (14%) Query: 11 VTKERTRHGKIIYYFRK--------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62 + + + ++G+ +YF+ G + AL+ + + Sbjct: 4 IKQYKKKNGEKAWYFKTYLGIDPLTGKKKYTTKRGFRTQKEAKT---ALSRLELELQKTG 60 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122 P TT K + +S + + + I G+ KI T + + Sbjct: 61 MPTSTNTTFKEAAELWLESYKKTVKESSYSRTKIIFNKHIYPNFGNIKLSKINTAYCQKV 120 Query: 123 VESRKHTPSSAIQ--FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 V +S F+ M +FK+A+ + NP L++ PK + E + + Sbjct: 121 VNDWSEKGTSKQYPLFINYMNKVFKYAINIGLTSDNPTLNLIIPKPQIETEKKLKLYTKE 180 Query: 181 Q---------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 Q + ++ F L +SG R + ++ + +KT Sbjct: 181 QLELFLNEVSQEQNPYFKNRDYTLFRLLAFSGCRIGEILALTWDNINFKTNEMAIKKTVA 240 Query: 232 I---------------------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264 K L K F ND+ Sbjct: 241 RSDKYYISETPKTKKSNRIIYLDEKTIKQLKFWKLEQRKYLFQLGFTKANFLFTNDENNF 300 Query: 265 NAT-QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-T 321 + + +AG+ HG R A++ +AGA E+ G + T Sbjct: 301 TINQAVAERYNIYRERAGLPYIGLHGFRHTHASMLYEAGADHKEVQERMGHANIKTTMDT 360 Query: 322 YTKGADRIRLGIKNSRRISSVVD 344 YT + + + ++++++ ++ Sbjct: 361 YTHITNSKK--EETTQKLTNYIN 381 >gi|224368839|ref|YP_002603000.1| tyrosine recombinase XerD [Desulfobacterium autotrophicum HRM2] gi|223691555|gb|ACN14838.1| tyrosine recombinase XerD [Desulfobacterium autotrophicum HRM2] Length = 384 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 57/346 (16%), Positives = 119/346 (34%), Gaps = 23/346 (6%) Query: 17 RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76 ++ K R +G+RI + + L G + E+ K TL+ + Sbjct: 30 KNKKYRVIVR-ANGKRI-IRTVNNLELARDIEGKLQGDIVRGEFDIEKPKSAITLQEVWE 87 Query: 77 EYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRK-------- 127 +Y + ++ + +++ + D I+ I + + K Sbjct: 88 KYLPWVKVNK---KTWLNDQYHYNHHLKPVFADNPLDTISPFDIEKFMVTMKKGKSKRGK 144 Query: 128 -HTPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + ++ + + L+ A + Y NPC V++PK + T +++ Sbjct: 145 PYAAATIKHQVVLLTRLYSVAEQWGLYSGDNPCKKVKKPKLNNQVTEFLTDDELNSLLDV 204 Query: 186 --WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP--DGF 241 F L++GLR + + +++ S+ + + LP D Sbjct: 205 LEKWHNKMSAGFILFCLHTGLRRGELFKLTWENVDLTRQSMVLKDPKGKLDQTLPLSDKA 264 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 +++L P +T +I K T F + AG+ K HG+R A+ Sbjct: 265 VEVLNSLPKDYKTQWIFYGKDGKQRTDFKGPWDRIKVAAGLPKDFRLHGLRHHFASALVS 324 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSRRISSVVD 344 AG + + K + Y AD+ +R + S + + Sbjct: 325 AGVDLYTVQKLLCHKDAAMTQRYAHLADKTLRDAVNLSDSLLEKKE 370 >gi|289663723|ref|ZP_06485304.1| site-specific tyrosine recombinase XerD [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289668605|ref|ZP_06489680.1| site-specific tyrosine recombinase XerD [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 323 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 47/312 (15%), Positives = 100/312 (32%), Gaps = 37/312 (11%) Query: 46 AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK 105 A L P + ++ ++ + + +A + S+ + + R Sbjct: 7 AERRQLAQQLPPLQAADAGV-----IERFLDRFWAE---QGVARQTLESYRRDLEGLARW 58 Query: 106 --SGDFDYRKITTKHIRSG---VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 I + ++P S + L+++R + +R + +P Sbjct: 59 RAGAGGGLLGIDRAALFDYLRLRAKANYSPRSTARLLSTLRAFYGLCLRDGMRSDDPTAL 118 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQH 216 ++ P+ + T+ ++ + + + R E + +GLR S+ Sbjct: 119 IDPPQLPRSLPKALTESQIEALLAAPEVDTPAGLRDRAMLELMYAAGLRVSELVNLPAVG 178 Query: 217 LQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT----------------PIGKETFFINN 259 + ++ V L + L G+ FI+ Sbjct: 179 VNLRQGVLRVTGKGSKDRLVPLGEESQHWLERYLRGARPLLAANKPVAAVDGQVPLFIDA 238 Query: 260 DKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTV 316 +Q ++ QF K A AG++ S HG+R AT + GA L G ++ Sbjct: 239 ARQPLSRQQFWALVKRYAAVAGIDPATVSPHGLRHSFATHLLNHGADLRALQMLLGHSSL 298 Query: 317 DQAETYTKGADR 328 + YT A + Sbjct: 299 STTQIYTLVARQ 310 >gi|256819226|ref|YP_003140505.1| tyrosine recombinase XerD [Capnocytophaga ochracea DSM 7271] gi|315224660|ref|ZP_07866483.1| tyrosine recombinase XerD [Capnocytophaga ochracea F0287] gi|256580809|gb|ACU91944.1| tyrosine recombinase XerD [Capnocytophaga ochracea DSM 7271] gi|314945288|gb|EFS97314.1| tyrosine recombinase XerD [Capnocytophaga ochracea F0287] Length = 303 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 39/265 (14%), Positives = 88/265 (33%), Gaps = 24/265 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVES--RKHTPSSAIQFLT 138 L+ N+ +S+ +++I + I +R V ++ S + ++ Sbjct: 17 RGLSQNTVVSYGLDIEKLIGYLEKYNITEPPDTIQVDTLRQFVYEVSKELNARSQARLIS 76 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRL 194 +++ FK+ + ++ P ++ PK + + +++ + EG + + Sbjct: 77 ALKSFFKFMISEKGREDFPMSLIDSPKIGVKLPDTLSLKEIDAMLASIDLSTDEGHRNKA 136 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ------------KTGTIITVELPDGFM 242 E L GLR S+ + L I+ + Sbjct: 137 IIETLYGCGLRVSELVSLRLSDLFFEEDFIRVMGKGSKQRLVPIESYTQKQINNYINNQR 196 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADA 300 K L + ++ F+N +++ + A G+ K+ H R AT + Sbjct: 197 KQLKIAKGHEDYVFLNRRGKQLTRAMIFTIVRQVAENIGLQKTISPHTFRHSFATHLLEN 256 Query: 301 GATAHELMATYGWKTVDQAETYTKG 325 GA + G + + E Y Sbjct: 257 GANLRAIQMMLGHENITTTEIYVHV 281 >gi|218290869|ref|ZP_03494933.1| integrase family protein [Alicyclobacillus acidocaldarius LAA1] gi|218239136|gb|EED06338.1| integrase family protein [Alicyclobacillus acidocaldarius LAA1] Length = 377 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 44/376 (11%), Positives = 109/376 (28%), Gaps = 48/376 (12%) Query: 15 RTRHGKIIYYF----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 + G + R G+R + + +T A + + S T Sbjct: 5 VRKRGNKWCFVIDVGRDEQGKRKQKWFSGFATKKEAERALAAKLQELNNGLLS--TSDMT 62 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT 129 + L+ ++ + + + + I G + HI++ + Sbjct: 63 VGKLLEDWLLDKQFH-VKPTTFELYSRIVTIHIAPMIGHLTLSDLRPDHIQNMYRMLQQK 121 Query: 130 -----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK- 183 + + +R K A++ + +P +VE P+ + WT E ++ F Sbjct: 122 TPPLQAKTIRTIHSILRNALKRALKWGLIPRDPSEAVELPRSPRRTLAIWTPEQIRTFLA 181 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------- 232 S+ F +Y+G+R + + I+ +T + Sbjct: 182 VNQDIDSRYYTIFVLAIYTGMRKGEILALRWSDIDFERDIIQVTRTFSWVDGEAMFLEAK 241 Query: 233 -------------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273 E + +L A + D + + + + Sbjct: 242 THHSNRSIAISHDVKVQLLRHREFQEQEKRLYADSYHDGNLVVARPDGEPIRLSSLQKQW 301 Query: 274 KAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRL 331 + +AG+ H +R A++ G + G + TY+ + Sbjct: 302 RHAVKRAGLPEIRFHDLRHTHASLLLLQGVHPKIVSERLGHSNISITMDTYSHVLPSLHR 361 Query: 332 GIKNSRRISSVVDSDD 347 + + + ++ + + Sbjct: 362 --EVAEDFARLISNKN 375 >gi|184159192|ref|YP_001847531.1| site-specific recombinase XerC [Acinetobacter baumannii ACICU] gi|294840725|ref|ZP_06785408.1| site-specific tyrosine recombinase [Acinetobacter sp. 6014059] gi|183210786|gb|ACC58184.1| Site-specific recombinase XerC [Acinetobacter baumannii ACICU] Length = 308 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 45/279 (16%), Positives = 90/279 (32%), Gaps = 27/279 (9%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRK--SGDFDYRKITTKHIRSGVESR---- 126 L+S + K + + ++ ++E + D R + +R + R Sbjct: 10 QLLSMWLKERKIQNQSEHTITAYERDVKSFLEFCELKKVDLRNVEASDLREYLAQRVEQD 69 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + + SS + LTS+R KWA + +Y+ INP + ++ E + Q Sbjct: 70 QLSSSSMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILDQP 129 Query: 187 SEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVEL 237 + + E L SGLR ++ ++ + N ++ V Sbjct: 130 MPEKPVDQQLWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKGNKTRIVPF 189 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAGV--NKS 285 + L + + D+ Q K +A +AGV + Sbjct: 190 GKKAKESLLNWLKIYNIWKGHFDQNASVFISQRGGALTPRQIEKRVKLQAQRAGVNVDLH 249 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R A+ + + G + + YT Sbjct: 250 PHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTH 288 >gi|325131793|gb|EGC54493.1| tyrosine recombinase XerD [Neisseria meningitidis M6190] gi|325137843|gb|EGC60418.1| tyrosine recombinase XerD [Neisseria meningitidis ES14902] Length = 291 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 43/273 (15%), Positives = 93/273 (34%), Gaps = 19/273 (6%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTP 130 LI ++ L+ N+ + ++I R+ + + + V Sbjct: 5 LIDRLLETLWLDRRLSQNTLNGYRRDLEKIARRLSQSGRMLKDADEADLAAAVYVDGEQR 64 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---- 186 SS + L++ + L+ W R+ NP ++ PK T++ + + + Sbjct: 65 SSQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLLAAPDTDT 124 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-----------IKTQKTGTIITV 235 G + + E + +GLR S++ + + + + V Sbjct: 125 PHGLRDKALLELMYATGLRVSEAVGLNFSSVDLDRGCITALGKGDKQRMVPMGQESAYWV 184 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSA 294 E + L + + F++ K ++ + K A +AG+ S H +R A Sbjct: 185 ERYYTEARPLLLKGRNCDALFVSQKKTGISRQLAWMIVKEYAGRAGIGYISPHSLRHAFA 244 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGAD 327 T G + G ++ + YT A+ Sbjct: 245 THLVRHGLDLRVVQDMLGHADLNTTQIYTHVAN 277 >gi|313888282|ref|ZP_07821953.1| phage integrase, N-terminal SAM domain protein [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845685|gb|EFR33075.1| phage integrase, N-terminal SAM domain protein [Peptoniphilus harei ACS-146-V-Sch2b] Length = 329 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 46/320 (14%), Positives = 100/320 (31%), Gaps = 46/320 (14%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD---------------------Y 111 LI ++ + N+ + R Sbjct: 6 LIDDFLDYMKSTKGASDNTVKEYYYDLRMFARFIKRRKGLVDSKIEFDHITIEDISPDLL 65 Query: 112 RKITTKHIRSGVE----SRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKR 166 +T + I + RK + S + ++S+R + + + + + INP + ++ PK Sbjct: 66 ESVTKQDIYAYNAFLERERKISNRSKFRKISSIRSFYNYLHAKIDIIKINPVIDIDMPKV 125 Query: 167 KTEGIRPWTKEDMQQFKSFWSEGS-------QPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219 + T + E + L G+R S+ + HLQ Sbjct: 126 EKTLPVYLTLDQSLNLLKTIEESKIKPLYKKRDYAIVTLFLNCGMRLSELAGMDISHLQQ 185 Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN-----NDKQKMNATQFSIWFK 274 + K + L + + + + + +Q+M+ + Sbjct: 186 DNTLKVIGKGNKERVIYLNEASVYAIEEYLKLRPQIKDDALFLSMRQQRMSNRSIQHMIE 245 Query: 275 AKATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKG---AD 327 +G++ S H +R +AT+ + G A L G ++V+ E YT A Sbjct: 246 KHMKNSGLDTNIYSVHKLRHTAATLLYEYGNADIRALQEILGHESVNTTEIYTHVNKKAL 305 Query: 328 RIRLGIKNSRRISSVVDSDD 347 R + ++++ + D Sbjct: 306 RKMVDSNPLSKLNNYTNKKD 325 >gi|15838084|ref|NP_298772.1| site-specific tyrosine recombinase XerC [Xylella fastidiosa 9a5c] gi|34223079|sp|Q9PD96|XERC_XYLFA RecName: Full=Tyrosine recombinase xerC gi|9106507|gb|AAF84292.1|AE003977_15 site-specific recombinase [Xylella fastidiosa 9a5c] Length = 294 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 41/269 (15%), Positives = 91/269 (33%), Gaps = 18/269 (6%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRKHT 129 L+ ++ H ++ ++ ++ +I + + +++ V + Sbjct: 4 LVDDFFAFLHVERGMSAHTLDAYRRDIGALIAWGVQQAVGEVVALDRAQLQAFVAAEHRR 63 Query: 130 PSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED---MQQFK 183 SA + L++ R + W V++ ++AINP + PK + R ++ Q Sbjct: 64 GLSAKSLQRRLSACRGFYAWLVKRGHIAINPAAGLRAPKALRKLPRILDADEAVSFVQIP 123 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFM 242 + G + R E SGLR S+ C + + K V + + Sbjct: 124 TDTPLGLRDRALLELFYSSGLRLSELCGLRWGGVDLDAGLVSVLGKGSRQRVVPVGSYAL 183 Query: 243 KLLAMTPIG-----KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSAT 295 L ++ F ++A + K A + G+ + H +R A+ Sbjct: 184 SALREWCASSGGGAQQPVFPGRYGGPISARAVQVRIKQLAQRQGMAKHVHPHMLRHSFAS 243 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324 ++ + G + + YT Sbjct: 244 HLLESSGDLRGVQELLGHADITTTQIYTH 272 >gi|163792809|ref|ZP_02186786.1| integrase/recombinase XerD [alpha proteobacterium BAL199] gi|159182514|gb|EDP67023.1| integrase/recombinase XerD [alpha proteobacterium BAL199] Length = 314 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 44/309 (14%), Positives = 99/309 (32%), Gaps = 26/309 (8%) Query: 63 SPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHI 119 + + P I + + A N+ ++ + + Sbjct: 2 ARQAAPRGWTSAIETFLEMMAAERGAARNTLDAYGRDLMHAELWLNERGGSLETADVDGL 61 Query: 120 RSGVESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 R+ + + + P +A + L++ R F++ + A +P +++ P+R + ++ Sbjct: 62 RAYLSAAEAGGVMPRTAARRLSAQRQFFRFLYAEGRRADDPTATLDAPRRGRPLPKILSE 121 Query: 177 EDMQQFKSFWS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--------- 222 D+ EG + E L +GLR S+ + + Sbjct: 122 ADVDALLDAACDRPGPEGLRLICLLEVLYATGLRVSELVGLPFAAVARDPHVLIVRGKGG 181 Query: 223 --SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280 + + + + T F + + + +F A A Sbjct: 182 KERMVPLTAAAMDAIAAYKAVRGVFLTTKASPHLFPSRSAQGHLTRRRFGQLLDETAILA 241 Query: 281 GVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKNS 336 G++ S H +R AT D GA + G + + YT A+R+R ++ Sbjct: 242 GIDPAKVSPHVLRHAFATHLLDHGADLRSVQQMLGHADISTTQIYTHVLAERLRALVETH 301 Query: 337 RRISSVVDS 345 ++ + S Sbjct: 302 HPLARSLSS 310 >gi|323974393|gb|EGB69521.1| tyrosine recombinase XerC [Escherichia coli TW10509] Length = 298 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 41/278 (14%), Positives = 90/278 (32%), Gaps = 21/278 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SRK 127 + Y + L+ + ++++ + II + + + + + Sbjct: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +S L+++R F W V Q + NP V PK + +D+ + Sbjct: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDINRLLDIDI 127 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243 + R E + +GLR S+ ++HL + K + + + Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187 Query: 244 LLAMTPIGKETFFINND-------KQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 + ++ F +D ++++A F K G+ + H +R A Sbjct: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 T ++ + G + + YT D L Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 284 >gi|269121304|ref|YP_003309481.1| integrase family protein [Sebaldella termitidis ATCC 33386] gi|268615182|gb|ACZ09550.1| integrase family protein [Sebaldella termitidis ATCC 33386] Length = 304 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 40/283 (14%), Positives = 92/283 (32%), Gaps = 31/283 (10%) Query: 77 EYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSA 133 E+ + + N+ S++ + + +++ I + + V+ T ++ Sbjct: 9 EFLDYLRYEKGSSENTLSSYKRDLNLFFSEVP-KNFQSIEDEEVIEYVDKLSKTVKRNTV 67 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW---TKEDMQQFKSFWSEGS 190 ++ + S+R +K+ +Y+ NP S++ KR+ + +D+ EG Sbjct: 68 LRKIASIRAFYKFCYINKYITDNPTESLKNLKREFKLPEVLKLSEIKDIIDAIPNTPEGV 127 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPDGFMKLLAMT 248 + ++ + L+ +G R S+ ++ ++N + K + + + + Sbjct: 128 RDKIIIKILVATGARISEVLTLDIKDVENQDYEFIRVLGKGSKYRLIPIYSQLEEEIKAY 187 Query: 249 PIGKE--------------------TFFINNDKQKMNATQFSIWFKAKATKAGVNKS--A 286 F K A A + K+ Sbjct: 188 IENDRKILVLERKEKESENKNKKKGHELEYKLFLGTRRENFWKRLKKYAKNAKIEKNVYP 247 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 H R AT+ + GA + G + E YT R Sbjct: 248 HIFRHSVATMLINNGADIRIVQEILGHVNISTTEIYTHVGKRE 290 >gi|219854481|ref|YP_002471603.1| hypothetical protein CKR_1138 [Clostridium kluyveri NBRC 12016] gi|219568205|dbj|BAH06189.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 295 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 35/275 (12%), Positives = 93/275 (33%), Gaps = 20/275 (7%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTPSSAIQ 135 Y + ++ N+ ++ ++ + +++ I + V+ + + Sbjct: 11 YAEQLEKKHMSKNTLDAYIRDINRFYNFIKKREGNLKEVEVVSIMAYVQYLQKEGKAISS 70 Query: 136 FLT---SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SE 188 + S+R +K+ + + + NP L E PK K + T +++ + + Sbjct: 71 IVRNIVSLRNFYKYLMVKGVINENPLLYYEIPKVKHNIPKVLTVDEVDKLLDSPDSTTYK 130 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-TGTIITVELPDGFMKLLAM 247 G + + E + +G++ + + + I+ + V + ++ L Sbjct: 131 GIRDKAMLEIMYAAGMKVMELLTLTIYDIDLKFSYIRCKSLKNKERLVPIGSVAVQYLKN 190 Query: 248 TPIGKETFFINNDKQ--------KMNATQFSIWFKAKATKAGVNKSAH--GVRKFSATIS 297 + I N M+ F K A ++ ++K + +R A Sbjct: 191 YLDIRPQLNIYNLDTLFLNLRGAAMSRQGFWKIVKYYAKESKIDKDINAFTLRHSFAVHL 250 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 GA + G K + + Y+ + ++ Sbjct: 251 LQNGADIKSVQELLGHKDLSATQIYSAVLKKNKIA 285 >gi|261392878|emb|CAX50459.1| tyrosine recombinase XerD [Neisseria meningitidis 8013] gi|325144209|gb|EGC66516.1| tyrosine recombinase XerD [Neisseria meningitidis M01-240013] gi|325203840|gb|ADY99293.1| tyrosine recombinase XerD [Neisseria meningitidis M01-240355] gi|325206404|gb|ADZ01857.1| tyrosine recombinase XerD [Neisseria meningitidis M04-240196] Length = 291 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 43/273 (15%), Positives = 96/273 (35%), Gaps = 19/273 (6%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTP 130 LI ++ L+ N+ + ++I R+ + + + V Sbjct: 5 LIDRLLETLWLDRRLSQNTLNGYRRDLEKIARRLSQSGRMLKDADEADLAAAVYVDGEQR 64 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---- 186 SS + L++ + L+ W R+ NP ++ PK T++ + + + Sbjct: 65 SSQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLLATPDTDT 124 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-----------IKTQKTGTIITV 235 G + + E + +GLR S++ ++ + + + V Sbjct: 125 PHGLRDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITALGKGDKQRMVPMGQESAYWV 184 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294 E + L + + F++ K ++ + K A++AG+ + S H +R A Sbjct: 185 ERYYTEARPLLLKGRNCDALFVSQKKTGISRQLAWMIVKEYASQAGIGHISPHSLRHAFA 244 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGAD 327 T G + G ++ + YT A+ Sbjct: 245 THLVRHGLDLRVVQDMLGHADLNTTQIYTHVAN 277 >gi|258514510|ref|YP_003190732.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771] gi|257778215|gb|ACV62109.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771] Length = 301 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 43/286 (15%), Positives = 84/286 (29%), Gaps = 30/286 (10%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYF----DQIIRKSGDFD----YRKITTKHIRSGVE 124 L+ + + + + S++ D D ++ +R + Sbjct: 4 LLDNFIIYLQLQKNASPKTVESYQKDLFDGIDFFSAALNKKDNELLPMDVSHNLMRRYLA 63 Query: 125 SRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + S+ + L S R +K+ R++Y+ N V PK + E ++ Sbjct: 64 QMQQKGLARSTVARRLASWRSFYKYLCREDYLQQNHLAGVATPKGNGKLPLFLETEQLKL 123 Query: 182 FKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236 G + E L +GLR S++ + L + +K + Sbjct: 124 LLEAPDSTTSLGQRDAALLEILYAAGLRVSEAVNLDLSALDFDSRMLKAYGKGSKERMIP 183 Query: 237 LPDGFMKLLAMTPIGKETF-----------FINNDKQKMNATQFSIWFKAKATKAGVN-- 283 L + F+NN +++ K G+ Sbjct: 184 FGTYAAAALKLYIKDGRHKLSKISQSEQAVFLNNSGTRLSDRGIRKIIDKYIEKTGLKSA 243 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 S H +R AT D GA + G + + YT + Sbjct: 244 ISPHTLRHTFATHLLDNGADLRSVQELLGHVRLSTTQIYTHVSVEK 289 >gi|78186473|ref|YP_374516.1| tyrosine recombinase XerD [Chlorobium luteolum DSM 273] gi|78166375|gb|ABB23473.1| Tyrosine recombinase XerD [Chlorobium luteolum DSM 273] Length = 306 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 48/265 (18%), Positives = 89/265 (33%), Gaps = 25/265 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTS 139 + A N+R S+ + + + D IT + I V + PSS + +++ Sbjct: 25 RNFAGNTRESYRNDLGRYLLAMQEDDVPLEAITAERINHFVLALHQAGLEPSSIARNVSA 84 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-------QP 192 +R L ++ + +A NP ++ +PK+ T ++ ++ S + Sbjct: 85 IRSLHRFLFNEHRLASNPAETLHQPKQARYLPAVLTLQETERVLEAPMLQSPPGRFLLRD 144 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIG 251 R E L SG+R ++ Q+L + I+ V + D + Sbjct: 145 RAILELLYASGIRVTELVDMTQQNLYLDERFIRIFGKGSKERLVPIGDAAAAWIRRYREE 204 Query: 252 KETFFINNDKQKM----------NATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 N + K A AG+ K S H R AT + Sbjct: 205 LRMKLSNRNSLDHLFLNARGRKLTRMAVYNMVKEYARLAGIEKNISPHTFRHTFATHLLE 264 Query: 300 AGATAHELMATYGWKTVDQAETYTK 324 GA + G ++ + YT Sbjct: 265 GGADLRAVQEMLGHSSIVATQIYTH 289 >gi|297618132|ref|YP_003703291.1| integrase family protein [Syntrophothermus lipocalidus DSM 12680] gi|297145969|gb|ADI02726.1| integrase family protein [Syntrophothermus lipocalidus DSM 12680] Length = 349 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 45/351 (12%), Positives = 102/351 (29%), Gaps = 33/351 (9%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 ++ G+ G+ + A + + + T++ Sbjct: 2 KKRPDGRYQAKVTLPGGKVKFVYGRTIREVNEAKE-----TLKMQYALGVIPDNKITVQE 56 Query: 74 LISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132 ++ ++ G +S+ + I G+ + + H+++ + S Sbjct: 57 WAEKWWRTVKEGKTGNSSQEGYLLAMNKYIFPALGNMKLKDVRPIHVQNLINQMGEQGKS 116 Query: 133 ---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 Q L ++ +FK+AVR ++ NP E + + T + + +G Sbjct: 117 KSLQRQVLVALNGMFKYAVRNGLISGNPAQYTEYYEVPANERQALTPAQVAELLQAC-KG 175 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGV----------------QHLQNNIFSIKTQKTGTII 233 ++ LA LY GLR + + + N + Sbjct: 176 TRAELATHLALYCGLRRGEMVALKWSDLDENTRTIHVKKAVEFVNNQPKEKSPKSKAEER 235 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFS 293 + +P +L P ++ +M T + K + H +R Sbjct: 236 IIPIPPHLWDMLQSQPKKSMFVIPSDQGTQMTKTAVRRLLEPVQKKVSFYFTWHMLRHTY 295 Query: 294 ATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVV 343 AT G G + + YT D ++ + + + Sbjct: 296 ATALDKLGIPPKTCQYLLGHADISTTKNIYTHIQD------EHIAQAARQI 340 >gi|256827378|ref|YP_003151337.1| tyrosine recombinase XerD [Cryptobacterium curtum DSM 15641] gi|256583521|gb|ACU94655.1| tyrosine recombinase XerD [Cryptobacterium curtum DSM 15641] Length = 302 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 41/283 (14%), Positives = 83/283 (29%), Gaps = 29/283 (10%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF-------DYRKITTKHIRSGV 123 + E+ A ++ ++E + + + IT +I + Sbjct: 2 DDTVREFLSYLRVERGAATSTVRAYEHDLTRYVEFLASLQPAGTAISWSHITRDNIVAFE 61 Query: 124 ESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 S K +S + L+S++ ++ + NP + PK+ + + + Sbjct: 62 SSLKDQGLALTSRARALSSIKSFHRFLEVDGRCSKNPASLISLPKKPQRLPDVLSIDTVG 121 Query: 181 QFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITV 235 + + R E L GLR S+ C V + + + K V Sbjct: 122 RLLDSSIGDRPVDLRDRALLEVLYGCGLRASELCGLDVDRVNTDDGVLLVRGKGDKERIV 181 Query: 236 ELPDGFMKLLAMTPIG------------KETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 L K L F+N ++ + + G++ Sbjct: 182 PLAGTAEKALCDYLEHGRPVLARAGRTSTMAVFLNARGSRLTRQSVHRIVRNAGLRVGID 241 Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 H +R AT + GA + G + + YT Sbjct: 242 NLHPHTLRHSCATHLLEGGADLRIIQDMLGHSDIATTQIYTHV 284 >gi|218710942|ref|YP_002418563.1| site-specific tyrosine recombinase XerC [Vibrio splendidus LGP32] gi|254799361|sp|B7VMD2|XERC_VIBSL RecName: Full=Tyrosine recombinase xerC gi|218323961|emb|CAV20323.1| Integrase/recombinase XerC [Vibrio splendidus LGP32] Length = 310 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 39/276 (14%), Positives = 93/276 (33%), Gaps = 23/276 (8%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRS---GVESRKHTP 130 EY +S L+++++ +++ + + G D+ ++ +R Sbjct: 22 EYLRSE--KGLSLHTQRNYKQQLETMAAHLVTLGLKDWSQVDAAWVRQLASKGMREGMKA 79 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 SS L+S+R F + V + + NP V P+++ + +++ Q + Sbjct: 80 SSIATRLSSLRSFFDFLVLRGEMTANPAKGVSAPRKQRPLPKNLDVDEVGQLLDVNEDDP 139 Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLA 246 + R E + +GLR ++ ++ + I+ + + Sbjct: 140 LSIRDRAMMEVMYGAGLRLAELVGINLKDVLGRQGEIRVIGKGDKERKAPFSGLAKEWVD 199 Query: 247 MT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296 G+ F++ +++ + K V + S H +R AT Sbjct: 200 KWLKVRGALASPGETALFVSKLGTRISHRSVQKRMEEWGKKQSVASHISPHKLRHSFATH 259 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 ++ + G + + + YT D L Sbjct: 260 VLESSQNLRAVQELLGHENISTTQVYTH-LDFQHLA 294 >gi|300854312|ref|YP_003779296.1| putative integrase/recombinase XerD [Clostridium ljungdahlii DSM 13528] gi|300434427|gb|ADK14194.1| predicted integrase/recombinase XerD [Clostridium ljungdahlii DSM 13528] Length = 292 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 36/275 (13%), Positives = 96/275 (34%), Gaps = 20/275 (7%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTPSSAIQ 135 Y ++ ++ N+ ++ + D + + I + V+ + + Sbjct: 8 YEETLEKKHMSKNTMDAYVRDITRFYNFIKDREENLENVEVVSIMAYVQYLQKEGRAISS 67 Query: 136 FLT---SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-- 190 + S+R +K+ + + + NP L + PK + + + T E++ + + + Sbjct: 68 IVRNIVSLRNFYKYLMLKGVLNENPVLYYQIPKVEHKVPKILTIEEVDKLLEAPNLDTNK 127 Query: 191 --QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-TGTIITVELPDGFMKLLAM 247 + + E + +G++ + + + + ++ + V + +K L Sbjct: 128 GIRDKAMLEVMYAAGMKVMELLSLTIYDIDLKLSYVRCRSLKEEERIVPIGSVAVKYLKN 187 Query: 248 TPIGKETFFINN--------DKQKMNATQFSIWFKAKATKAGVNKSAH--GVRKFSATIS 297 + I N +M+ F K A +A ++K+ + +R A Sbjct: 188 YLNIRHKLNIYNLDVLFLNLRGVQMSRQGFWKIVKYYAKEANIDKNINAFTLRHSFAVHL 247 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 GA + G K + + Y+ R ++ Sbjct: 248 LQNGADIKSVQELLGHKELSATQIYSSVIKRNKIA 282 >gi|325662745|ref|ZP_08151339.1| hypothetical protein HMPREF0490_02079 [Lachnospiraceae bacterium 4_1_37FAA] gi|325470982|gb|EGC74210.1| hypothetical protein HMPREF0490_02079 [Lachnospiraceae bacterium 4_1_37FAA] Length = 361 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 52/352 (14%), Positives = 109/352 (30%), Gaps = 38/352 (10%) Query: 22 IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS 81 + G+ I +T A + + + Y + Sbjct: 3 QVRVKDYTGKTIHKKKRGFTTKKEALEWERDFLNKANADMG------MLFQDFVDLYFED 56 Query: 82 AHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR-----KHTPSSAIQ 135 L ++ IS +I+ G +IT K IR K+ A Sbjct: 57 MKHR-LKESTIISKRYMVDKKILPVFGKIPINEITPKDIRKWQNGLTAYRDKNGKPYAQT 115 Query: 136 FLTSMR----VLFKWAVRQEYVAINPC-LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 +L ++ +F +AV+ + NPC + K E ++ WTK + +QF + + Sbjct: 116 YLRAINNQITAMFNYAVKYYDLRENPCTKAGSMGKSNAEEMQFWTKAEFEQFITAVQDKP 175 Query: 191 QPRLAFEFLLYSGLRCSDSCRAG----------------VQHLQNNIFSIKTQKTGTIIT 234 AF + Y+G+R + C Q + + + Sbjct: 176 ASYTAFMTMYYTGMRVGELCALTPADVDLKNNTIAISKTFQRINGKDVIWAPKTPKSNRV 235 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293 + +P L N+ + K+GV K H +R Sbjct: 236 ITIPQTLADCLKTYMDKCYEIQPNDRLFPYTKHFLNHEMLRGCKKSGVKKIRVHDLRHSH 295 Query: 294 ATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVD 344 A++ + G + G + + TY+ + + ++++ ++++ Sbjct: 296 ASLLIEMGCQPLLIADRLGHEKIQTTLNTYSHLYPNKQ--AEVAQQLENLIN 345 >gi|73662825|ref|YP_301606.1| putative integrase recombinase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|82582337|sp|Q49X37|XERC_STAS1 RecName: Full=Tyrosine recombinase xerC gi|72495340|dbj|BAE18661.1| putative integrase recombinase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 296 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 38/275 (13%), Positives = 87/275 (31%), Gaps = 21/275 (7%) Query: 76 SEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHT--- 129 Y + ++ S+ +Q D K R+ + Sbjct: 6 QAYLYMLKVEKQFSEHTLKSYHDDLEQFNVFLAQEHLDLNAFEYKDARNYLSYLYSKNLK 65 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSF 185 +S + ++++R +++ + Q+ +NP + + PK++ + +E+M ++ Sbjct: 66 RTSVSRKISTLRSFYEYWMTQDEAVVNPFIQLVHPKKEHYLPHFFYEEEMEALFDTVEND 125 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKL 244 +G + R+ E L +G+R S+ Q + K G + + + Sbjct: 126 AKKGLRDRVILELLYSTGIRVSELVHIKEQDIDMTSPGVKVLGKGGKERFIPFGEFCKQS 185 Query: 245 LAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSA 294 + + +N + + AGV H +R A Sbjct: 186 MERYLASFKPKLNSNHDYLLVNMKGDPITERGVRYVLNDVVKRTAGVTEIHPHKLRHTFA 245 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 T + GA + + G + YT + Sbjct: 246 THMLNQGADLRTVQSLLGHVNLSTTGRYTHVTNEQ 280 >gi|309389348|gb|ADO77228.1| integrase family protein [Halanaerobium praevalens DSM 2228] Length = 312 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 96/301 (31%), Gaps = 35/301 (11%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-------GDFDYRKITTKHIRSG 122 +++++K + + + S +Q+ + DF ++ I Sbjct: 9 FLQALNKFKKYLKVEKGYSQLTIKEYNSDLNQLHKYLKEELDFKADFKPAEVDRLDISEF 68 Query: 123 VES----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER-PKRKTEGIRPWTKE 177 + + + + L ++R +K+ + V NP ++E + Sbjct: 69 LADAVIINDNKAVTRNRKLFAIRSFYKYLLHYGIVNQNPAEAIESSKTEIRLEPIYLKLK 128 Query: 178 DMQQFKSFWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GT 231 + +QF + SE + + LY+GLR S+ +L SIK Sbjct: 129 EAKQFINAISENGGINRLRDLAIVKLFLYAGLRISELVNLDFDNLDFEDCSIKFYGKGNK 188 Query: 232 IITVELPDGFMKLLAMT-----------PIGKETFFINNDKQKMNATQFSIWFKAKATKA 280 V L + + ++ FI+ ++++ ++ K A K+ Sbjct: 189 ERYVPLHHDVILAIKKYLPERNSIKIKENDARQAIFISRHGKRISPRTIQLFVKKYAKKS 248 Query: 281 GV----NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKN 335 G+ + H +R A+ + G + + YT + + I Sbjct: 249 GLGRADKITPHKLRHTFASTLYRQTKDIKVVQDLLGHANLSTTQIYTHVDTEEKKSAIDE 308 Query: 336 S 336 Sbjct: 309 M 309 >gi|110644136|ref|YP_671866.1| site-specific tyrosine recombinase XerC [Escherichia coli 536] gi|123048654|sp|Q0TAR4|XERC_ECOL5 RecName: Full=Tyrosine recombinase xerC gi|110345728|gb|ABG71965.1| integrase/recombinase XerC [Escherichia coli 536] Length = 298 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 42/278 (15%), Positives = 92/278 (33%), Gaps = 21/278 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 + Y + L+ + ++++ + ++G +++ +R+ + Sbjct: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIIHFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 Query: 131 SSAIQ---FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 A L+++R F W V Q + NP V PK + +DM + Sbjct: 68 LGAAGLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMSRLLDIDI 127 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243 + R E + +GLR S+ ++HL + K + + + Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187 Query: 244 LLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 + ++ F +D ++++A F K G+ + H +R A Sbjct: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 T ++ + G + + YT D L Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 284 >gi|310821627|ref|YP_003953985.1| Tyrosine recombinase XerD [Stigmatella aurantiaca DW4/3-1] gi|309394699|gb|ADO72158.1| Tyrosine recombinase XerD [Stigmatella aurantiaca DW4/3-1] Length = 310 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 41/284 (14%), Positives = 94/284 (33%), Gaps = 24/284 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHT 129 + + L+ + ++ + G D ++ + + + + Sbjct: 4 FLDTFIAFIRAERGLSGKTVDAYAADLTVYFEDLRARGVLDVARVKQEDVTAHLMQLGAR 63 Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 S + L ++R ++ + +++ +P ++ P+ + T E+++Q + Sbjct: 64 GLSKRSQARHLAAVRGFHRFLIAEKHAEKDPTEDLDTPRSARKLPSFLTLEEVEQLLAAP 123 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 G + + E L +GLR S+ C G+ +Q + + V + Sbjct: 124 DERHPTGMRDKAMLELLYATGLRVSELCSLGINDVQLGAGYLVAKGKGSKERVVPVGSVA 183 Query: 242 MKLLAMTPIGKETFFINNDKQK----------MNATQFSIWFKAKATKAGVNK--SAHGV 289 ++ + G + + + F K A KAG+ K S H + Sbjct: 184 VEKVQAYLGGPRQHLLGKRQSRSLFITPRGGAFTRQGFWKLLKRYALKAGIRKPISPHKL 243 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 R AT + GA + A G + + YT + Sbjct: 244 RHSFATHLVERGADLRAVQAMLGHADLATTQIYTHVNSARLRAV 287 >gi|306815150|ref|ZP_07449303.1| site-specific tyrosine recombinase XerC [Escherichia coli NC101] gi|305851519|gb|EFM51973.1| site-specific tyrosine recombinase XerC [Escherichia coli NC101] Length = 298 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 42/278 (15%), Positives = 90/278 (32%), Gaps = 21/278 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SRK 127 + Y + L+ + ++++ + II + + + + + Sbjct: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +S L+++R F W V Q + NP V PK + +DM + Sbjct: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMSRLLDIDI 127 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243 + R E + +GLR S+ ++HL + K + + + Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187 Query: 244 LLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 + ++ F +D ++++A F K G+ + H +R A Sbjct: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 T ++ + G + + YT D L Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 284 >gi|262383756|ref|ZP_06076892.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_33B] gi|298375888|ref|ZP_06985844.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_19] gi|262294654|gb|EEY82586.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_33B] gi|298266925|gb|EFI08582.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_19] Length = 302 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 50/277 (18%), Positives = 97/277 (35%), Gaps = 25/277 (9%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGVESRK 127 LI ++ + + + + ++ DQ R G FD +I + +RS + S Sbjct: 2 LIDDFLNYLRYERNYSNYTIGAYSKDLDQFQRYVREHREGVFDPGEIDSDFVRSWIVSLM 61 Query: 128 H---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-----WTKEDM 179 +P S + L+S++ FK+ +++ V+ NP V PK K Sbjct: 62 DEKLSPVSVNRKLSSLKSFFKFLMKRGIVSANPLRLVSGPKTKKPLPYFIKDSELEALLD 121 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239 EG + RL E L +G+R S+ + +K + Sbjct: 122 GDGFDEDFEGVRNRLVIEMLYDTGMRRSELIGIRNVDVDYEAMQVKVTGKRNKQRLIPFA 181 Query: 240 GFMKLLAMTPIGKE---------TFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHG 288 +K L + FF+ + +++ K + ++ + +S H Sbjct: 182 EGLKNLMLAYTEVRDREVEAAGEWFFVRKNGNQLSTGIVYNIVKKQLSEIPMLAKRSPHV 241 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 +R AT + GA + + G ++ YT Sbjct: 242 LRHSFATSMLNNGAELNAVKDLLGHSSLASTSVYTHT 278 >gi|261880904|ref|ZP_06007331.1| tyrosine recombinase XerD [Prevotella bergensis DSM 17361] gi|270332412|gb|EFA43198.1| tyrosine recombinase XerD [Prevotella bergensis DSM 17361] Length = 292 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 44/288 (15%), Positives = 97/288 (33%), Gaps = 25/288 (8%) Query: 75 ISEYRKSAHWG-SLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRKHT 129 I ++ + + + S+ G + + + IR +E Sbjct: 2 IEKFLNYLQFELCRSPLTVESYRRDLQAFEVFFRNLNGQLSWESVDSDVIRDWMEGMMDR 61 Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 +S + L+++R L+++A+ + VA +P ++ PK++ + + +M + Sbjct: 62 GNNAASVNRRLSALRSLYRFALSHQLVARDPARCIDGPKKQKPLPQFLKENEMDRLLDDM 121 Query: 187 SEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDG 240 GS + + +G+R S+ + + T K + D Sbjct: 122 EWGSGYKDVRAKTIITTFYETGIRLSELVGLDDESADFHNHQLKVTGKGNKQRIIPFGDE 181 Query: 241 FMKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFK-AKATKAGVNK-SAHGVR 290 K L + +M + Q K A + K + H +R Sbjct: 182 LEKTLRWFVETRNREVERTGNALFVTEEGVRMTSQQVRQEVKARLAQVCTLKKLTPHVLR 241 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337 AT + GA + G ++V E YT ++++ K++ Sbjct: 242 HTFATTMLNHGAGLESVKRLLGHESVSTTEIYTHTTFEQLKQAYKDAH 289 >gi|56415803|ref|YP_152878.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197364733|ref|YP_002144370.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56130060|gb|AAV79566.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197096210|emb|CAR61807.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 300 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 45/278 (16%), Positives = 96/278 (34%), Gaps = 21/278 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSG---VESRK 127 +S + + L+ + ++++ D II +G+ +++ +RS + Sbjct: 10 VSRFLRYLDVERQLSPITLLNYQRQLDAIIALAGETGLKSWQQCDAAIVRSFAVRSRRKG 69 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 P+S L+++R F W V Q + NP V PK + +D+ + Sbjct: 70 LGPASLALRLSALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKNIDVDDVNRLLDIDL 129 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243 + R E + +GLR S+ ++HL + K + + + Sbjct: 130 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLPIGRNAVT 189 Query: 244 LLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 + + F + + ++++A F K G+ + H +R A Sbjct: 190 WIEHWLDLRGLFASDEEALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFA 249 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 T ++ + G + + YT D L Sbjct: 250 THMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 286 >gi|323136790|ref|ZP_08071871.1| integrase family protein [Methylocystis sp. ATCC 49242] gi|322398107|gb|EFY00628.1| integrase family protein [Methylocystis sp. ATCC 49242] Length = 357 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 59/344 (17%), Positives = 118/344 (34%), Gaps = 17/344 (4%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYP-HESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 + RHG+ Y RK +P + FI + + +P++KP L Sbjct: 13 KDRHGRWRCYHRKSRTPIDLARFPLGSAEFIAECARIVA-----LKEAQTPKEKPGALGM 67 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPS 131 LI +YR S + L+ ++ ++ +FD + D + + + Sbjct: 68 LICDYRASPAFLDLSARTQADYQKHFDYLRP-IADTPLARFDRPLVVRIRDKAAAAKGRR 126 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 ++ V+F W + Y+A NP ++ +R + + Sbjct: 127 FGNYLKATLSVVFGWGRERGYLADNPASGIKAIRRPKGAPDANRPWSDAERHAVLDAAPA 186 Query: 192 PRL-AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250 L A ++ +GL D+ H ++ + K KTG + +P+ +L P Sbjct: 187 HMLPAIALMMMTGLGPKDALALPRNHWRDGEIATKRAKTGEPVFWPVPEPLDAILRAAPR 246 Query: 251 GKETF-FINNDKQKMNATQFSIWFKAKATKA------GVNKSAHGVRKFSATISADAGAT 303 ++ + F ++ + G + +G+R A I +AG Sbjct: 247 HDAVTLCASSTGRPWTLDGFRASWRTLRLRLEAQGAIGPGLTLYGLRHTVAVILREAGFD 306 Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347 + G KT++ A Y +GAD + ++ Sbjct: 307 ERTIADALGQKTIEMARRYARGADLRPKMRGVVASFDAELNKRR 350 >gi|331675279|ref|ZP_08376030.1| tyrosine recombinase XerC [Escherichia coli TA280] gi|331067565|gb|EGI38969.1| tyrosine recombinase XerC [Escherichia coli TA280] Length = 298 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 43/278 (15%), Positives = 91/278 (32%), Gaps = 21/278 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SRK 127 + Y + L+ + ++++ + II + + + + + Sbjct: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +S L+++R F W V Q + NP V PK + +DM + Sbjct: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI 127 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243 + R E + +GLR S+ ++HL + K + + + Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187 Query: 244 LLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 + ++ F +D ++++A F A K G+ + H +R A Sbjct: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAAWGIKQGLNNHVHPHKLRHSFA 247 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 T ++ + G + + YT D L Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 284 >gi|187734784|ref|YP_001876896.1| tyrosine recombinase XerC [Akkermansia muciniphila ATCC BAA-835] gi|187424836|gb|ACD04115.1| tyrosine recombinase XerC [Akkermansia muciniphila ATCC BAA-835] Length = 300 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 32/284 (11%), Positives = 78/284 (27%), Gaps = 30/284 (10%) Query: 76 SEYRKSAHW-GSLAVNSRISFESYFDQIIRK-------SGDFDYRKITTKHIRSGVESRK 127 ++ + + ++ + Q + ++ + + Sbjct: 10 QDFLQYLEVEKQASPHTVEVYARALRQFRAWAADSFPGWENCTPDQMRDWLFQELKDEAA 69 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 + S ++R +++ +R+ + NP V P+RK T M + Sbjct: 70 TS--SIRLRFAALRSFYRFMMRRHGLETNPMTGVSLPRRKKTLPVFLTLNQMLELLELPY 127 Query: 187 ----------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITV 235 + E G+R S+ V + + K + Sbjct: 128 KTAVPANAPAWLPYRDAAILELFYSCGMRLSELVGLDVGSVDHRFRGVKVMGKGRKERIL 187 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDK-----QKMNATQFSIWFKAKATKAGVNKS--AHG 288 + + L + +++A + + + + H Sbjct: 188 PVGTPALAALETYVSMACLPKNSPLFVSRIGTRLSARSVQMMLNKYVKLSSIPFTISPHK 247 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 +R AT +AGA + G ++ + YT R R+ Sbjct: 248 IRHTFATHILEAGADLRSVQELLGHASLSTTQIYTHVT-RARMA 290 >gi|170698617|ref|ZP_02889685.1| tyrosine recombinase XerD [Burkholderia ambifaria IOP40-10] gi|170136470|gb|EDT04730.1| tyrosine recombinase XerD [Burkholderia ambifaria IOP40-10] Length = 320 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 47/288 (16%), Positives = 89/288 (30%), Gaps = 27/288 (9%) Query: 66 KKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSG---DFDYRKITTKHIRS 121 ++ + + LA N+ ++ + D + Sbjct: 27 ASRASIDVFCDALWLEH----GLARNTLDAYRRDLVLFSQWLAATHDAPLDSADEAMLIG 82 Query: 122 GVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + +R +S+ + L+ R + WAVR+ + +P L + K+ ++ ++ Sbjct: 83 YIAARSDGKATSSNRRLSVFRRYYGWAVREHRASADPTLRITSAKQAARFPSTLSEAQVE 142 Query: 181 QFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITV 235 G+ + R E + SGLR S+ + N ++ V Sbjct: 143 ALLGAPDIGTPLGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGSKERLV 202 Query: 236 ELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--N 283 + + F+ M QF K A +A V + Sbjct: 203 PFGEVAHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQAAVRAH 262 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 S H +R AT + GA + G + + YT A R RL Sbjct: 263 LSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVA-RERL 309 >gi|302391937|ref|YP_003827757.1| integrase family protein [Acetohalobium arabaticum DSM 5501] gi|302204014|gb|ADL12692.1| integrase family protein [Acetohalobium arabaticum DSM 5501] Length = 310 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 39/287 (13%), Positives = 91/287 (31%), Gaps = 35/287 (12%) Query: 85 GSLAVNSRISFESYF----DQIIRKS----GDFDYRKITTKHIRSGVES----RKHTPSS 132 + ++ ++ + ++ + + I + + + ++P + Sbjct: 21 RGYSESTVNHYKHDLSVFGRYLEKEFDCNLEELNVTNINRFEVSEFLSDIILVKDNSPEA 80 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSFWSEG-- 189 + L S+R F++ ++ + NP S+E +++M+++ Sbjct: 81 RNRKLYSLRSFFEYLKKRNIIKNNPTDSIEASKSELKSEPIYLNEKNMEKYLEAIKNYNS 140 Query: 190 ---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLL 245 S+ + LYSGLR S+ + + SIK V L + + Sbjct: 141 KYCSRDLAINKLFLYSGLRISELVNLNLDDINYEDQSIKFFGKGNKERYVPLHQEALTAI 200 Query: 246 AMTPIGKETFFINND-----------KQKMNATQFSIWFKAKATKAGV----NKSAHGVR 290 + N +++++ K A KAGV + H +R Sbjct: 201 KDYLPDRNKITPKNQDARQALFLSNQRRRISVRTIQKMVKKYAKKAGVRNASKITPHKLR 260 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNS 336 A++ L G + + YT ++ + I Sbjct: 261 HTFASLLYQKTKDLRVLQDLLGHSDISTTQIYTHTDKEQRKSAIDEM 307 >gi|229494828|ref|ZP_04388582.1| tyrosine recombinase XerD [Rhodococcus erythropolis SK121] gi|229318266|gb|EEN84133.1| tyrosine recombinase XerD [Rhodococcus erythropolis SK121] Length = 307 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 44/283 (15%), Positives = 88/283 (31%), Gaps = 34/283 (12%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHT- 129 + Y A N+ +S+ ++ G D +T + V + Sbjct: 6 VDSYLDHLAVERGSARNTLLSYRRDLNRYAEYLNGRGIDDVAGVTENDVTEFVTHLRLGD 65 Query: 130 ---------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT----- 175 SSA + L ++R K++ + V+++ +V+ P + + Sbjct: 66 KDAGVVPLAASSAARTLIAVRGFHKFSAAEGLVSVDVARTVKPPTPGRKLPKALPLDDVI 125 Query: 176 ---KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGT 231 + R E L +G R +++ V + S+ K G Sbjct: 126 ALLDASGGGAAGDGPRDLRDRALLELLYSTGARITEAIDLDVDDIDTETRSVLLKGKGGK 185 Query: 232 IITVELPDGFMKLLAMTPIGKETF---------FINNDKQKMNATQFSIWFKAKATKAGV 282 V + + + + F+N +++ + A AG+ Sbjct: 186 QRIVPVGRPAIAAVDAYLVRGRPSLATRGVPALFLNARGGRLSRQSAWQILQDAAASAGI 245 Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + S H +R AT D GA + G +V + YT Sbjct: 246 KADVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYT 288 >gi|125974940|ref|YP_001038850.1| phage integrase [Clostridium thermocellum ATCC 27405] gi|125715165|gb|ABN53657.1| phage integrase [Clostridium thermocellum ATCC 27405] Length = 370 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 50/365 (13%), Positives = 108/365 (29%), Gaps = 43/365 (11%) Query: 17 RHGKIIYYF----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 + G R +G+R + + T A AL K E T+ Sbjct: 7 KRGSTYSIVVDIGRDENGKRKQKWFSGYKTKKEA-EKALADIIAKIEKGEYFEPANMTVA 65 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHT 129 ++ + + ++A ++ + + I G K+ HI+S S + Sbjct: 66 EYLNYWLDTYPKNNVAPSTYRRYTEFAAHIKTHIGGIMMPKLKPAHIQSFYSSLLEKNLS 125 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 S+ ++ + + K AV + + NP +V P+ +R W E ++F Sbjct: 126 KSTVLKIHRMLHLALKHAVNWQIIISNPTDAVTPPRPDKVEMRVWDVETAKKFLD-DIAE 184 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII---------------- 233 + + L +G+R + C +++ + + I Sbjct: 185 TPIYIPVLLALQTGMRAGEICGLKWENIDLPRGFLMVKYALQRINGVLTLKEPKTAKSMR 244 Query: 234 --------------TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279 + L+ ++ +D + + F Sbjct: 245 TIALMDYTVQALKEHKRKQNKTKLLMGSAYNDQDFVCAWDDGRPYDPHYLGQKFTKLIKL 304 Query: 280 AGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSR 337 G K H +R AT+ G + G + +TY+ + + Sbjct: 305 LGYPKIRFHDLRHTHATMLLQQGINPKIVSERLGHSQISVTLDTYSHVLPN--IQKEAVS 362 Query: 338 RISSV 342 +I + Sbjct: 363 KIEEL 367 >gi|154686030|ref|YP_001421191.1| site-specific tyrosine recombinase XerC [Bacillus amyloliquefaciens FZB42] gi|154351881|gb|ABS73960.1| CodV [Bacillus amyloliquefaciens FZB42] Length = 305 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 38/283 (13%), Positives = 90/283 (31%), Gaps = 27/283 (9%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVE 124 L EY + + + + +++ + ++ G + + + Sbjct: 8 FLKLFVEYLQIE--KNYSQYTIVNYVNSIEEFGMFLHAQNINGMKEAAYHDVRIFLTEAY 65 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQ 180 + + + + ++++R +K+ +R++ V NP V PK++ + +++ Sbjct: 66 EKGLSRKTISKKISALRSFYKFLMREKLVEENPFQLVHLPKQEKRIPKFLYEKELEELFA 125 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD 239 G + + E L +G+R S+ C V L + ++ K + Sbjct: 126 VSDRSQPSGMRDQALLELLYATGMRVSECCTLTVGDLDLFMDTVLVHGKGKKQRYIPFGS 185 Query: 240 GFMKLLAMTPIGKETF------------FINNDKQKMNATQFSIWFKAKATKAG--VNKS 285 L + F+N + A KA ++ Sbjct: 186 YARDALELYINSGRQCLLEKAKEPHDVLFVNQRGGPLTARGIRYILSGLVKKASGTLHIH 245 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 H +R AT + GA + G + + YT + Sbjct: 246 PHMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQIYTHVSKE 288 >gi|168786649|ref|ZP_02811656.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC869] gi|189373217|gb|EDU91633.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC869] Length = 298 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 43/278 (15%), Positives = 95/278 (34%), Gaps = 21/278 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSG---VESRK 127 + Y + L+ + ++++ + II + G ++++ +R+ + Sbjct: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQNWQQCDAAMVRNFAVRSRRKG 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +S L+++R F W V Q + NP V PK + +D+ + Sbjct: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKTPRHLPKNIDVDDINRLLDIDI 127 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243 + R E + +GLR S+ ++HL + K + + + Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVIGKGSKERRLPIGRNALS 187 Query: 244 LLAMTPIGKETFFINND-------KQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 + ++ F +D ++++A F K G+ + H +R A Sbjct: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 T ++ + G + + YT D L Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 284 >gi|84490143|ref|YP_448375.1| site-specific recombinase/integrase [Methanosphaera stadtmanae DSM 3091] gi|84373462|gb|ABC57732.1| predicted site-specific recombinase/integrase [Methanosphaera stadtmanae DSM 3091] Length = 316 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 37/274 (13%), Positives = 83/274 (30%), Gaps = 21/274 (7%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRK---ITTKHIRSGVESR 126 + + +Y + N+ +++S D + D + + R + Sbjct: 11 FEDQVEDYILEMDIQGYSSNTLKTYKSILDNFYKFILSDRKIKDEKGMLRAFKRYLQYLK 70 Query: 127 KHTPSSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + S ++ F++A Y I + + + + + Sbjct: 71 REKEVSTNYIYLVTVVLKKFFEFAEIHIYEEIKAPKRTKSLPKSLNEQEVYDLIHAKDNE 130 Query: 184 S-------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITV 235 + +L L +GLR S+ + V + N +I+ + V Sbjct: 131 YDPEKTNPQNITRLRNKLILTLLYSTGLRVSELTKLKVTTIDENERTIRVRGKGDKDRIV 190 Query: 236 ELPDG----FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 + + L + E F+N +++ + K A AG+ + + H + Sbjct: 191 IFDEDTLDLIHEYLDKRGVENEYLFVNQRNTSLSSRYIQLMIKEYAKDAGITRRVTPHIL 250 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323 R AT G + G + + YT Sbjct: 251 RHSFATHLLKNGVDIRAIQQLLGHSNLSTTQIYT 284 >gi|319778943|ref|YP_004129856.1| Tyrosine recombinase XerC [Taylorella equigenitalis MCE9] gi|317108967|gb|ADU91713.1| Tyrosine recombinase XerC [Taylorella equigenitalis MCE9] Length = 315 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 41/291 (14%), Positives = 97/291 (33%), Gaps = 38/291 (13%) Query: 72 KWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT- 129 + ++ +S + + ++ +++ +I + D K+ +R + + Sbjct: 2 SKYVEQWLQSLVTEKNSSPHTVAAYKRDLQHLIDIFPEKDLSKLNNMDVRQAIATLHSRD 61 Query: 130 --PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ------- 180 P S + L+S R +KW + + INP L ++ PK + T ++ + Sbjct: 62 FNPRSLTRILSSWRNFYKWYSLKYELDINPTLGIKAPKVARPLPKALTADEAKLLLDVGL 121 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----------- 229 Q + ++ + FE L SGLR S+ +++ ++ K Sbjct: 122 QTDDNSAVHARDQAMFELLYSSGLRLSELVNLDIEYHKSQDHVSKGWLDINNHELTVIGK 181 Query: 230 -GTIITVELPDGFMKLLAMTPIGK-------------ETFFINNDKQKMNATQFSIWFKA 275 V L + + + + F+ ++++ + K Sbjct: 182 GNKPRIVPLGEKAEEAILHWLNRRIELEGPKTSASDKCALFLGAQGKRISTRVVQLQLKK 241 Query: 276 KATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 A K + H +R A+ + + G + + YT+ Sbjct: 242 LALKTNIPSNIHPHVLRHSFASHILQSSQDLRAVQDLLGHSKISTTQLYTR 292 >gi|227325794|ref|ZP_03829818.1| site-specific tyrosine recombinase XerC [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 311 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 44/278 (15%), Positives = 92/278 (33%), Gaps = 21/278 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESRKHTP 130 + + + L+ ++ S+ I+ +G D+R++ +RS V K Sbjct: 20 VDAFLRYLKVERQLSPLTQTSYLRQLSAVITILSAAGVADWRRLDASGVRSVVSRSKRDG 79 Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 SS L+++R W V + + NP V P+ + ++ + Sbjct: 80 LHSSSLALRLSALRSFLDWMVSRGVLVANPAKGVSTPRAGRPLPKNMDVDETNRLLEINL 139 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243 + + R E + +GLR ++ QH+ + K + + + Sbjct: 140 DDPLAVRDRTMLEVMYGAGLRLAELVGMDYQHIDLASGEIWVMGKGSKERKLPIGKTAVT 199 Query: 244 LLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 L + FI+N ++++ F K G+ + H +R A Sbjct: 200 WLERWLALRELFGPQDDAVFISNQGRRISMRNVQKRFAEWGIKQGINSHVHPHKLRHSFA 259 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 T ++ + G + + YT D L Sbjct: 260 THMLESSGDLRAVQELLGHANLTTTQIYTH-LDFQHLA 296 >gi|300726218|ref|ZP_07059671.1| tyrosine recombinase XerC [Prevotella bryantii B14] gi|299776415|gb|EFI72972.1| tyrosine recombinase XerC [Prevotella bryantii B14] Length = 293 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 40/276 (14%), Positives = 92/276 (33%), Gaps = 24/276 (8%) Query: 74 LISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKH 128 +I ++ + + + + S+ D + + + +R +E Sbjct: 2 IIEDFLDYLQFELNRSERTVQSYGDDLRAFQSYFEGLDDHLSWESVDSDVVRGWIELMMD 61 Query: 129 TPSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 +SA + L+++R +++A+ ++ V +P ++ PKR + + +M Sbjct: 62 KGNSATSINRRLSALRTFYRFALSRKRVESDPVHMIKGPKRGKPLPQFLKENEMNALLDT 121 Query: 186 WSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPD 239 G + R +G+R S+ + T K + + Sbjct: 122 AMHGESFYDVRDRTIIMTFYETGIRLSELIGLDDNDVDFQKGELKVTGKRNKQRIIPFGN 181 Query: 240 GFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGV 289 L + ++ F F++N ++N Q + ++ +S H + Sbjct: 182 ELASALTIYMKLRDEFIGNTSLALFVSNKGCRLNGNQVRYLVQKNLSRVSTLKKRSPHVL 241 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 R AT + A L G ++ E YT Sbjct: 242 RHTFATAMLNHEAGLESLKKLLGHASLSTTEIYTHT 277 >gi|298531237|ref|ZP_07018637.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] gi|298508847|gb|EFI32753.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] Length = 384 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 58/342 (16%), Positives = 114/342 (33%), Gaps = 25/342 (7%) Query: 9 PFVTKERTRHGKIIYYFR----KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64 + E G Y+ + +G ++I+L + A A P Sbjct: 31 KGLMLEVRPTGIKTYFLKYKTPRGGYKQIKLGRNSFLSVEQARDIA-AKVLADVAMGKDP 89 Query: 65 RKKPTTL-------KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117 + + TL + + Y + + + ++ K G +IT Sbjct: 90 QDEKKTLKVVPTFEDFAWNSYL--PYVQGYKRSWKSDLSFLRTHLVPKFGKLHLDQITRD 147 Query: 118 HIRSGVESR---KHTPSSAIQFLTSMRVLFKW--AVRQEYVAINPCLSVERPKRKTEGIR 172 I + + R P+SA + + +R +F V +NP V + + R Sbjct: 148 DIMAMHQERLKNGAAPASANRLVILLRYMFNLAIQWETPGVTVNPTKGVPLAEENNQRER 207 Query: 173 PWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230 T+E++Q+ E P L L+ +G R S+ A + L + T Sbjct: 208 YLTEEEVQRLCKAVKESENPLLEPIISMLILTGARKSEVLNAKWEDLDLERKRWRIPYTK 267 Query: 231 --TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA-TQFSIWFKAKATKAGV-NKSA 286 TV L + +++L P + + +I + K+G+ + Sbjct: 268 SGKPRTVPLSESALEVLRSVPKVEGSEYIFPSPVTGKPFNSIYNSWNTARIKSGLEDVKI 327 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 H +R A+ +AG +E+ G + Y+ +D Sbjct: 328 HTLRHSFASFLVNAGRNLYEVGKLLGHTQMRTTMRYSHLSDE 369 >gi|121533770|ref|ZP_01665597.1| tyrosine recombinase XerC [Thermosinus carboxydivorans Nor1] gi|121307761|gb|EAX48676.1| tyrosine recombinase XerC [Thermosinus carboxydivorans Nor1] Length = 302 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 39/287 (13%), Positives = 87/287 (30%), Gaps = 28/287 (9%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGVESRK- 127 I ++ + + + ++ S+ + + + + IT IR+ + K Sbjct: 8 IEQFFRYLRLEKNASPHTVKSYREDIEHFWEFALQHNGSEVLFAAITPMLIRAYLARLKA 67 Query: 128 --HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + ++ + + ++R +++ R+ V NP V PK + + + ++ + Sbjct: 68 DDYARTTIARRIAALRSFYRFLCREGLVDTNPFKLVHTPKIEKKLPVFLDEREVAELLEL 127 Query: 186 W---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGF 241 G + E L +G+R ++ + + F I K V + Sbjct: 128 PADDVLGRRDAAILELLYATGIRVAELTGLKTSDVDLVSRFVIVCGKGAKERIVPIGRTA 187 Query: 242 MKLL-------------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 L + FIN+ + V S Sbjct: 188 AAALERYLADARPRLYSKWRKEQHQFLFINSKGGPLTDRSVRRIIDKYIANLAVAKKVSP 247 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 H +R AT + GA + G + + YT + Sbjct: 248 HTIRHTFATHMLNNGADLRSVQEMLGHVNLSTTQLYTHVTKERLKAV 294 >gi|328472418|gb|EGF43284.1| site-specific tyrosine recombinase XerC [Vibrio parahaemolyticus 10329] Length = 310 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 39/286 (13%), Positives = 99/286 (34%), Gaps = 22/286 (7%) Query: 68 PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRS-- 121 P++L+ + + + L+++++ +++ + + + G D+ ++ +R Sbjct: 10 PSSLQKPLERFYEFLRSEKGLSLHTQRNYKQQLETMAQHLAEMGLKDWSQVDAGWVRQLA 69 Query: 122 -GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 SS L+S+R F + + + ++ NP V P++K + +++ Sbjct: 70 GKGMREGMKASSLATRLSSLRSFFDFLILRGEMSANPAKGVSAPRKKRPLPKNLDVDEVN 129 Query: 181 QFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236 Q + + R E + +GLR ++ V+ +Q ++ V Sbjct: 130 QLLEVNEDDPLAIRDRAMMELMYGAGLRLAELVSVDVRDVQLRSGELRVIGKGDKERKVP 189 Query: 237 LPDGFMKLLAMTPIGK--------ETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 + + + F++ +++ K V + S Sbjct: 190 FSGMATEWVGKWLRVRGDLAAPGEPALFVSKLGTRISHRSVQKRMAEWGQKQSVASHISP 249 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R AT ++ + G + + + YT D L Sbjct: 250 HKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTH-LDFQHLA 294 >gi|307132969|ref|YP_003884985.1| site-specific tyrosine recombinase [Dickeya dadantii 3937] gi|306530498|gb|ADN00429.1| site-specific tyrosine recombinase [Dickeya dadantii 3937] Length = 302 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 43/278 (15%), Positives = 89/278 (32%), Gaps = 21/278 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTP 130 + + L+ ++ S+ II G D++ + +R+ V K Sbjct: 11 AEAFLRYLRVERQLSPLTQSSYAHQLQVIIDMLSASGIADWQALDAAGVRAVVARGKRDG 70 Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +S Q L+++R W V + + NP V PK + ++M + Sbjct: 71 LNAASLAQRLSALRSFLDWLVGRGELKANPARGVPAPKAGRHLPKNMDVDEMSRLLDIDL 130 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243 + R E + +GLR ++ H+ ++ K + + + Sbjct: 131 SDPLAVRDRAMLEVMYGAGLRLAELVGLDCGHVDLDSGEVWVMGKGSKERKLPIGATAVT 190 Query: 244 LLAMTPIGKETFFINNDKQ-------KMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 L ++ + +D +++ F K GV + H +R A Sbjct: 191 WLRNWLAIRDIYAPEDDAIFISSLGKRISMRNVQKRFAEWGVKQGVNSHVHPHKLRHSFA 250 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 T ++ + G + + YT D L Sbjct: 251 THMLESSGDLRAVQELLGHANLSTTQIYTH-LDFQHLA 287 >gi|319900908|ref|YP_004160636.1| tyrosine recombinase XerC subunit [Bacteroides helcogenes P 36-108] gi|319415939|gb|ADV43050.1| tyrosine recombinase XerC subunit [Bacteroides helcogenes P 36-108] Length = 294 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 37/276 (13%), Positives = 94/276 (34%), Gaps = 24/276 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSGV---ES 125 L + + + + + + + ++ + GD + + +R + Sbjct: 3 LTDSFLDYLLYERNYSEGTVKYYRADILELQKFGEEMLGDLTPSDVDAELVREWITFLMD 62 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + ++ + L+S+R +++ +++ VA++P + PK+K + +M + Sbjct: 63 KGCASNTVNRKLSSIRTYYRFLLQRGMVAMDPLQKIVGPKKKKPLPTFLRQGEMDRLLDD 122 Query: 186 W-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 +G + R+ E +G+R S+ + + + IK + D Sbjct: 123 IDFGEGFKGCRDRMIIEMFYATGMRLSELIGLNDKDVDFSASLIKVTGKRNKQRLIPFDK 182 Query: 241 FMKLLAMTPIGKET----FFINNDKQKMNATQFSIWFKAKATKAGV-------NKSAHGV 289 ++L + + + N + K + +S H + Sbjct: 183 ELELSMRKYVNVRNEAIPIRTDAFFVRKNGRRLYRSIVEYLVKRNLSKVVTVKKRSPHVL 242 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 R AT + GA + G +++ E YT Sbjct: 243 RHTFATAMLNNGADLGSIKELLGHESLATTEIYTHT 278 >gi|170734437|ref|YP_001766384.1| site-specific tyrosine recombinase XerC [Burkholderia cenocepacia MC0-3] gi|169817679|gb|ACA92262.1| tyrosine recombinase XerC [Burkholderia cenocepacia MC0-3] Length = 306 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 43/288 (14%), Positives = 89/288 (30%), Gaps = 31/288 (10%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS---GVESRKHTP 130 I+ Y + L+ ++ ++ D++ + + +T +R + + Sbjct: 6 IAAYLSNLKHVRQLSEHTLRAYTHELDELKKLAAGRPLEALTAADMRGAVVRGHAAGLSA 65 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 S L++ R ++W ++ + NP V PKR+ + + +D G+ Sbjct: 66 RSISHRLSAWRAFYRWFAQRVEMPANPVAGVRAPKREKSLPKALSVDDAVALMDAPLAGT 125 Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------GTIIT 234 + E SGLR ++ V++ Q + + Sbjct: 126 TEGIRDHAILELFYSSGLRLAELVGLDVRYTQADGYRSAGWLDLAEAEVTVRGKGNKERK 185 Query: 235 VELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--K 284 V + + L F++ +M+ K A AG+ Sbjct: 186 VPVGSKAIDALNAWLAVRGEFVKHDPHPLFVSVRGNRMSPGVVRERVKRAALAAGIPANV 245 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R AT + + G +V + YT D L Sbjct: 246 HPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQIYT-SLDFQHLA 292 >gi|284923919|emb|CBG37018.1| tyrosine recombinase [Escherichia coli 042] gi|320176053|gb|EFW51122.1| Tyrosine recombinase XerC [Shigella dysenteriae CDC 74-1112] Length = 298 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 43/278 (15%), Positives = 93/278 (33%), Gaps = 21/278 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSG---VESRK 127 + Y + L+ + ++++ + ++G +++ +RS + Sbjct: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRSFAVRSRRKG 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +S L+++R F W V Q + NP V PK + +DM + Sbjct: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI 127 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243 + R E + +GLR S+ ++HL + K + + + Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187 Query: 244 LLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 + ++ F +D ++++A F K G+ + H +R A Sbjct: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 T ++ + G + + YT D L Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 284 >gi|83595882|gb|ABC25244.1| tyrosine recombinase xerC [uncultured marine bacterium Ant4D3] Length = 312 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 45/283 (15%), Positives = 89/283 (31%), Gaps = 22/283 (7%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126 L ++ +Y + + ++ ++ ++I G + IR + + Sbjct: 8 LNHVVQQYLDYLAYNKRYSPHTINAYARDMQRLIETLEDQGHGMWADAQADTIRDAMVTA 67 Query: 127 KHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + T P S + L+S R F + ++Q V +NP + PK + + + Q Sbjct: 68 RKTHLAPKSIQRILSSWRSFFTYLLQQNLVKLNPVDGIRAPKSPRKLPNSLDPDQISQVL 127 Query: 184 SF-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVEL 237 + + + E GLR ++ V + S I T K + + Sbjct: 128 NATITSDDPMAMRDKAMLELTYSCGLRLAELASLNVFDIDLTDASLIVTGKGNKTRQLPI 187 Query: 238 PDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGV 289 + L FIN+ Q+M + A G + H + Sbjct: 188 GRQAITALKSWLQQRGQLKCHDANALFINHRGQRMGVRGIQMRMANMAATHGQHIHPHML 247 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 R A+ + + G + + YT D L Sbjct: 248 RHSFASHLLQSSGDLRAVQELLGHSNISTTQVYTH-LDYQHLA 289 >gi|291301889|ref|YP_003513167.1| tyrosine recombinase XerD [Stackebrandtia nassauensis DSM 44728] gi|290571109|gb|ADD44074.1| tyrosine recombinase XerD [Stackebrandtia nassauensis DSM 44728] Length = 301 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 41/280 (14%), Positives = 91/280 (32%), Gaps = 28/280 (10%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRK 127 ++ +Y + N+ ++ + + G ++T I + Sbjct: 3 ARVVRDYLDHVTVERGHSANTIAAYRRDLGRYLDWLSETGLDALSQVTAADIGGYLARLS 62 Query: 128 H--------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + S + +++R L ++A+ + +P ++ PK + +++ Sbjct: 63 QGDDEHPGLSARSIARATSALRGLHRFALDEGVTDTDPTQALSTPKPALRLPKAIGVDEV 122 Query: 180 QQFKSF-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTII 233 + G + EFL +G R S++ A + L + +++ K G + Sbjct: 123 ARLLEAAAILDNPTGLRDTALVEFLYGTGARVSETIGADIDDLDFDAAAVRLRGKGGKVR 182 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQ--------KMNATQFSIWFKAKATKAG--VN 283 V L ++ L + + + + A +AG V+ Sbjct: 183 VVPLGGYAVRALENYLTRARPSWTPGHPKLFVNSRGKPLTRQGVFFILRGLADRAGMAVD 242 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 H +R AT D GA + G V + YT Sbjct: 243 LGPHTLRHSFATHLLDGGADIRVVQELLGHAAVSTTQIYT 282 >gi|83749114|ref|ZP_00946119.1| Integrase/recombinase (XerD/RipX family) [Ralstonia solanacearum UW551] gi|207721732|ref|YP_002252171.1| integrase/recombinase protein [Ralstonia solanacearum MolK2] gi|207742496|ref|YP_002258888.1| integrase/recombinase protein [Ralstonia solanacearum IPO1609] gi|83724235|gb|EAP71408.1| Integrase/recombinase (XerD/RipX family) [Ralstonia solanacearum UW551] gi|206586895|emb|CAQ17480.1| integrase/recombinase protein [Ralstonia solanacearum MolK2] gi|206593887|emb|CAQ60814.1| integrase/recombinase protein [Ralstonia solanacearum IPO1609] Length = 308 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 46/282 (16%), Positives = 86/282 (30%), Gaps = 24/282 (8%) Query: 73 WLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKH- 128 I + + LA N+ ++ + + + +R Sbjct: 17 EAIQRFCDALWLEDGLARNTLDAYRRDLTLYAQWLAGRGKAIDQTEDDDLADYFAARHEE 76 Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S+A + T + F+WA+R+ V +P + K+ + ++ ++ + Sbjct: 77 SRASTANRRRTVFKRFFQWALREHVVGADPSRLLSTAKQPPRIPKTLSEAQVEALIAAPD 136 Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGF 241 + + R E + SGLR S+ + N ++ V Sbjct: 137 VDTPLGLRDRAMIELMYASGLRVSEIVALKTVEVGLNEGVVRVIGGKGGKDRLVPFGAEA 196 Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289 L T F+ + M F K A +A + S H + Sbjct: 197 GDWLRRYLRDGRTALLGKRTADALFVTARGEGMTRQAFWHLIKRYALRADIHAPLSPHTL 256 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 R AT + GA + G + + YT A R RL Sbjct: 257 RHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVA-RERL 297 >gi|115352658|ref|YP_774497.1| site-specific tyrosine recombinase XerD [Burkholderia ambifaria AMMD] gi|115282646|gb|ABI88163.1| tyrosine recombinase XerD [Burkholderia ambifaria AMMD] Length = 322 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 47/275 (17%), Positives = 88/275 (32%), Gaps = 26/275 (9%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSG---DFDYRKITTKHIRSGVESRKH-TPSSA 133 + + LA N+ ++ + D + + +R +S+ Sbjct: 42 WLEH----GLARNTLDAYRRDLVLFSQWLAATHDVPLDSADEAMLIGYIAARSDGKATSS 97 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--- 190 + L+ R + WAVR+ + + +P L + K+ ++ ++ G+ Sbjct: 98 NRRLSVFRRYYGWAVREHHASADPTLRITSAKQAARFPSTLSEAQVEALLGAPDIGTPLG 157 Query: 191 -QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT 248 + R E + SGLR S+ + N ++ V + + Sbjct: 158 LRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGSKERLVPFGEVAHGWIERY 217 Query: 249 PIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296 F+ M QF K A +A V + S H +R AT Sbjct: 218 LRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRAHLSPHTLRHAFATH 277 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 + GA + G + + YT A R RL Sbjct: 278 LLNHGADLRVVQLLLGHSDISTTQIYTHVA-RERL 311 >gi|307700994|ref|ZP_07638019.1| site-specific tyrosine recombinase XerD [Mobiluncus mulieris FB024-16] gi|307613989|gb|EFN93233.1| site-specific tyrosine recombinase XerD [Mobiluncus mulieris FB024-16] Length = 319 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 44/285 (15%), Positives = 90/285 (31%), Gaps = 32/285 (11%) Query: 85 GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHT--------PSSA 133 + ++ +++ + + G ++T + V + +S Sbjct: 28 RGASPHTIAAYQRDLQRYVAYLQILGRDTLAQVTEIDLEGFVRALGDGFASFPPLGSTSV 87 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-----WSE 188 + L + R ++ + N SV+ K E+M+ + S Sbjct: 88 RRCLAAARSWHRYLFDSGSLGANVASSVKPAKLPRRLPETLNLEEMEALLAAASSPGDSN 147 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL---- 244 + R EFL SG R S++ + + + G + + Sbjct: 148 SLRDRALLEFLYASGARISEAMNLVLDDIDFETEPALVRLFGKGRKERISMLGHQACQAL 207 Query: 245 ----------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292 LA + F+N + M+ +A A +A +++ H +R Sbjct: 208 QAYLVRVRPTLAEKGQSRGRVFLNTYGKPMSRQTAWAIIQAAAKRAQIDRPVHPHTLRHC 267 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 AT GA + G +V E YTK + ++ L + S Sbjct: 268 FATHLLQGGADIRVVQELLGHASVTTTEIYTKVSKQMLLEVYASA 312 >gi|302035680|ref|YP_003796002.1| tyrosine recombinase xerC [Candidatus Nitrospira defluvii] gi|300603744|emb|CBK40076.1| Tyrosine recombinase xerC [Candidatus Nitrospira defluvii] Length = 317 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 47/278 (16%), Positives = 90/278 (32%), Gaps = 29/278 (10%) Query: 85 GSLAVNSRISFESYFDQIIRKS-------GDFDYRKITTKHIRSGVESRKHTP---SSAI 134 + + + ++ S Q + G +T IR + +R T +S Sbjct: 16 QNASSQTIRAYTSDLAQFHAFALGVQQPGGTLVPESVTPALIREFLAARDRTGDKKTSLA 75 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFWSEGS 190 + L +R F++ VR + +NP V PK + TK+D M+ G Sbjct: 76 RKLACLRSFFRYLVRIGQLDVNPAEDVRAPKLPKHLSQVLTKDDAGALMEFPGGTERVGL 135 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTP 249 + R E L +G R S+ + + ++ K + L ++ + Sbjct: 136 RDRAILETLYSTGARVSELVGMNCDDISRSEGLVRLRGKGRKERVIPLGIIALEAIDAYH 195 Query: 250 IGKETF-------------FINNDKQKMNATQFSIWFKAKATKA-GVNKSAHGVRKFSAT 295 + F N+ ++ + + + G H +R AT Sbjct: 196 AQIQAVPGPSSGRSDAAAVFRNSRGGRLTTRTIARIVAKYSRQLTGGAVHPHTLRHSFAT 255 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 D GA + G ++ + YT A L + Sbjct: 256 HLLDEGADLRAIQEMLGHASLSTTQKYTHLATDQLLAL 293 >gi|206561110|ref|YP_002231875.1| site-specific tyrosine recombinase XerD [Burkholderia cenocepacia J2315] gi|198037152|emb|CAR53073.1| putative integrase/recombinase [Burkholderia cenocepacia J2315] Length = 316 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 46/302 (15%), Positives = 89/302 (29%), Gaps = 27/302 (8%) Query: 52 TGSTPKREYINSPRKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDF- 109 + ++ + + LA N+ ++ + Sbjct: 9 EADDDAVAASPALLASRASIDVFCDALWLEH----GLARNTLDAYRRDLVLFSQWLAATH 64 Query: 110 --DYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 + + +R +S+ + L+ R + WAVR+ + +P L + K+ Sbjct: 65 AAPLDGADEAMVTGYIAARSDGKATSSNRRLSVFRRYYGWAVREHRASADPTLRITSAKQ 124 Query: 167 KTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222 ++ ++ G+ + R E + SGLR S+ + N Sbjct: 125 AARFPSTLSEAQVEALLGAPDIGTPLGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEG 184 Query: 223 SIKTQKT-GTIITVELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSI 271 ++ V + + F+ M QF Sbjct: 185 VVRVMGKGSKERLVPFGEVAHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFWN 244 Query: 272 WFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 K A +A V + S H +R AT + GA + G + + YT A R Sbjct: 245 IIKRHAQQADVRAHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVA-RE 303 Query: 330 RL 331 RL Sbjct: 304 RL 305 >gi|148379752|ref|YP_001254293.1| site-specific recombinase, phage integrase family [Clostridium botulinum A str. ATCC 3502] gi|153934110|ref|YP_001384049.1| site-specific tyrosine recombinase XerC [Clostridium botulinum A str. ATCC 19397] gi|153936224|ref|YP_001387591.1| site-specific tyrosine recombinase XerC [Clostridium botulinum A str. Hall] gi|168180365|ref|ZP_02615029.1| site-specific recombinase, phage integrase family [Clostridium botulinum NCTC 2916] gi|226949034|ref|YP_002804125.1| site-specific recombinase, phage integrase family [Clostridium botulinum A2 str. Kyoto] gi|148289236|emb|CAL83332.1| tyrosine recombinase [Clostridium botulinum A str. ATCC 3502] gi|152930154|gb|ABS35654.1| site-specific recombinase, phage integrase family [Clostridium botulinum A str. ATCC 19397] gi|152932138|gb|ABS37637.1| site-specific recombinase, phage integrase family [Clostridium botulinum A str. Hall] gi|182668709|gb|EDT80687.1| site-specific recombinase, phage integrase family [Clostridium botulinum NCTC 2916] gi|226843631|gb|ACO86297.1| site-specific recombinase, phage integrase family [Clostridium botulinum A2 str. Kyoto] Length = 326 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 50/299 (16%), Positives = 109/299 (36%), Gaps = 46/299 (15%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRK-------------SGDFDYRKITTKHIRSG-- 122 Y ++ + N+ S++ R D + + I+ + I++ Sbjct: 23 YLRTI--KGKSENTIESYKLDLIMFFRFLKLYKGMVPGETEFNDIEIKDISDEDIKNISL 80 Query: 123 ----------VESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGI 171 R + + + + +++ F++ + + + NP L +E PK Sbjct: 81 TDLFAFVSFVENYRNNGSYAKARKVATLKSFFRFLQGKVKIIKENPALELESPKISKRNP 140 Query: 172 RPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229 T ++ ++ S + R L GLR S+ C + +++N+I ++ + Sbjct: 141 VYLTLDESKRLLSSIDGKFKERDLCIVTMFLNCGLRLSELCGINISNIKNDILTVVGKGN 200 Query: 230 GTIITVELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATK 279 TV L +K L ++ F++ + ++N + K K Sbjct: 201 -KERTVYLNKACIKTLNDYLNVRKEMGEKIVDKDALFLSKNYTRINKRSVEMLVKKYVKK 259 Query: 280 AGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKG-ADRIRLGI 333 AG++ S H +R +AT+ G L G + + + YT +DR+R + Sbjct: 260 AGLDGEKYSPHKLRHTAATLMYKHGGVDIRSLQMILGHENISTTQIYTHVDSDRLREAV 318 >gi|116333446|ref|YP_794973.1| integrase [Lactobacillus brevis ATCC 367] gi|116098793|gb|ABJ63942.1| tyrosine recombinase XerC subunit [Lactobacillus brevis ATCC 367] Length = 311 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 35/275 (12%), Positives = 88/275 (32%), Gaps = 29/275 (10%) Query: 85 GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVES---RKHTPSSAIQFL 137 + + ++ + ++ G+ + I + + R + ++ + L Sbjct: 16 RQYSAETVKAYHEDLSEFVQFLADNGGEKPWTAIDQLDVEVYLSDLYDRHYARTTIARKL 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF- 196 +++R L+ + + +P V+ + + R + + +M + + +LA Sbjct: 76 STLRSLYSFLMSNGQAQDDPFAYVQLKRHQNHLPRFFYEREMTALFTAAAANPNEQLATR 135 Query: 197 -----EFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKLLA---- 246 E L +G+R S+ + + + + K V L Sbjct: 136 DTALLEVLYGTGIRVSECVNLALSEIDFDGRIMLIHGKGNKERYVPFGHYASDALQTYFD 195 Query: 247 --------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296 FIN+ Q++ + + ++ + + H +R AT Sbjct: 196 TARTPLMAQYQQDHPYVFINHRGQQLTSAGVTYLLNQIIKRSTLTTDIHPHMLRHTFATH 255 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 + GA + G ++ + YT R L Sbjct: 256 LLNRGADLRSVQELLGHSSLSTTQIYTHVT-REHL 289 >gi|157827676|ref|YP_001496740.1| site-specific tyrosine recombinase XerC [Rickettsia bellii OSU 85-389] gi|166918898|sp|A8GXV3|XERC_RICB8 RecName: Full=Tyrosine recombinase xerC gi|157802980|gb|ABV79703.1| site-specific tyrosine recombinase XerC [Rickettsia bellii OSU 85-389] Length = 305 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 44/284 (15%), Positives = 102/284 (35%), Gaps = 28/284 (9%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129 ++ LI +++K + + ++ IS+ + + ++ +T +I++ + Sbjct: 6 IQELIIKWQKYLSLQKNYSNHTLISYNNDLKHFLEFMNYYNSDIVTMDYIKAADIRLMRS 65 Query: 130 P-----------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 SS + L++++ +K+ + + + S++ PK+ + ++E+ Sbjct: 66 WLAKRKCDNFVTSSIARGLSAIKNFYKFLEKTAELHNHVVFSIKSPKKSKLLPKALSEEE 125 Query: 179 MQQFKSF-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 + + + + SGLR S++ HLQN F K Sbjct: 126 VNISLDHIEEYGNSQWIEIRNKALLVLIYASGLRISEALSITKLHLQNLEFIKIMGKGSK 185 Query: 232 IITVEL-------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN- 283 + +++ L E F +K+ F+ G+ Sbjct: 186 ERVIPWLAIARNLITEYLEKLPYELKDDEPIFRGKQGKKLQPPVFNRELIKLKRFYGLPE 245 Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 SAH R A+ + GA + G K++ ++YTK + Sbjct: 246 HLSAHSFRHSFASHLLENGADLRSIQELLGHKSLSTTQSYTKTS 289 >gi|237737422|ref|ZP_04567903.1| DNA integration/recombination/invertion protein [Fusobacterium mortiferum ATCC 9817] gi|229421284|gb|EEO36331.1| DNA integration/recombination/invertion protein [Fusobacterium mortiferum ATCC 9817] Length = 350 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 51/345 (14%), Positives = 119/345 (34%), Gaps = 24/345 (6%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE----STFIPAYMSALTGSTPKREYINSP 64 + K + + RK R+ Y + +I Y + EY+ +P Sbjct: 14 GNIYKMKDKS-------RKPRAVRVTTRYTLDCKQIRKYIGTYETKREAQESLFEYLKNP 66 Query: 65 RK-KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 + K T K + + +S + + + + + + D I H++ + Sbjct: 67 KLYKKITFKEITDLWFESYKKKIGSPKTLETNKYRL-RFLEPLNDMQITDIKLYHLQKLI 125 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + + S + + ++F++A + ++++ N +E K++ R + + Sbjct: 126 DEIDTSWSFKNGCKSVLNMIFEYAFKNDFISTNKVKFIELGKKEKVIERKIFTQKEIEIL 185 Query: 184 SFWSEGSQPR----LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239 L+Y+G+R + + + +IK + + T V Sbjct: 186 WENLNSKTYHGKYTYIILILIYTGMRIGELFNLKTEDIDLENRTIKVRVSKTSAGVRTIP 245 Query: 240 GFMKLLAMTPIG----KETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294 F K+ + +E F + +++ F FK + G+ + H R A Sbjct: 246 IFSKIFNLFKDNLIIGQEYFVKGDTTTQLSYATFKPRFKKLLKELGIQEHTIHDTRHTFA 305 Query: 295 TISADAGATAHELMATYGWKTVDQAE-TYTKG-ADRIRLGIKNSR 337 T+ +A A + ++ G E YT + +R ++ Sbjct: 306 TMLNNANANSTSIIRLIGHSNFSTTENIYTHKDTEELRKAMELLN 350 >gi|146337558|ref|YP_001202606.1| site-specific tyrosine recombinase XerC [Bradyrhizobium sp. ORS278] gi|146190364|emb|CAL74360.1| Tyrosine recombinase (integrase/recombinase) [Bradyrhizobium sp. ORS278] Length = 327 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 38/291 (13%), Positives = 84/291 (28%), Gaps = 34/291 (11%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQ----IIRKSGDF----DYRKITTKHIRSGVE 124 ++++ L+ + ++ Q + G+ + + IR+ + Sbjct: 27 AMTQWLAHLRSERRLSPKTVEAYARDLRQCLQFLCTHWGEPVTLPRFAALEASDIRAFMA 86 Query: 125 SRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 R+ S ++ L +R ++ R+ + V PK +P + ++ Sbjct: 87 MRRADDIAGRSLMRTLAGLRSFGRFLEREGQGKVGALAGVRAPKIAKSLPKPLPMDSAKR 146 Query: 182 FKSFW---------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN---IFSIKTQKT 229 ++ L SGLR S++ + + I T K Sbjct: 147 LTDADERAGESRETWVLARDAAVMALLYGSGLRISEALGLKRREVPRPGEGDVLIVTGKG 206 Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQ-------KMNATQFSIWFKAKATKAGV 282 V + + L+ ++ + + G+ Sbjct: 207 NKTRMVPVLQNVLALIDEYARLCPYPLPAEGPMFLGAKGGPLSPRIIQLAMERLRGALGL 266 Query: 283 N--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 + H +R AT G + G ++ + YT G D RL Sbjct: 267 PDSATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQVYT-GIDSERL 316 >gi|85373824|ref|YP_457886.1| integrase [Erythrobacter litoralis HTCC2594] gi|123099544|sp|Q2NB52|XERC_ERYLH RecName: Full=Tyrosine recombinase xerC gi|84786907|gb|ABC63089.1| integrase [Erythrobacter litoralis HTCC2594] Length = 306 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 44/293 (15%), Positives = 94/293 (32%), Gaps = 26/293 (8%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 I E+ A N+ ++ + +GD + R G P Sbjct: 5 SAAIEEFLAMLAAERGAAANTLAAYRRDLEGAEALAGDLATAR-RPALSRLGSAWSDLAP 63 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK--------EDMQQF 182 ++ + +++R + + V + +P ++ RP + + + + ++ Sbjct: 64 ATVARKASALRQFYGFLVDEGLREDDPSSALPRPTMRRPLPKTLSHKEVERLFEQAEREA 123 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGF 241 ++ + E L SGLR ++ V + + T K G V + Sbjct: 124 ETSRPLPVRLLALIELLYGSGLRATELVSLPVAAVPRDAPFLTVTGKGGVARMVPVSGRA 183 Query: 242 MKLLAMTPI---GKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSAT 295 + L + + K + + K A +A + S H +R AT Sbjct: 184 REALQSWMGLRGSDSPYLFPSRKAHITRVRLFQMLKELAVRADLNPDKVSPHVLRHAFAT 243 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 + GA L G + + YT ++ R+ ++V+ P Sbjct: 244 HLLEGGADLRVLQTLLGHADISTTQIYTHV---------DAARLVALVNERHP 287 >gi|114319227|ref|YP_740910.1| tyrosine recombinase XerC [Alkalilimnicola ehrlichii MLHE-1] gi|114225621|gb|ABI55420.1| tyrosine recombinase XerC [Alkalilimnicola ehrlichii MLHE-1] Length = 304 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 48/285 (16%), Positives = 97/285 (34%), Gaps = 23/285 (8%) Query: 70 TLKWLISEYRKSAHW-GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVES 125 TL I + + L+ ++ +++ + ++G D ++ IR + Sbjct: 3 TLDDDIRHFLHHLRYERGLSPHTLQAYQRDLTRFHHWCAENGLADRDAVSAHDIRRFAAA 62 Query: 126 RKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 R P S + L+S+R LF++ VR+ + NP V P+R + ++ + Sbjct: 63 RHRQGLAPGSVQRTLSSLRSLFRYLVREGRLTGNPAEGVAAPRRPRRLPGVLSPDEAARL 122 Query: 183 KSFWSEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVEL 237 E + R +E + SGLR +++ + L K V + Sbjct: 123 LEGSPEDDPLALRDRALYELIYSSGLRLAEAVGLDLGRLDLTEGLVEVVGKGAKTRRVPV 182 Query: 238 PDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287 + L + F++ +++A AT +GV H Sbjct: 183 GGKAREALQAWLAVRPALAGADEPAVFVSQRGGRLSARSVQARLARLATLSGVGRPVHPH 242 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 +R A+ ++ + G + + YT D L Sbjct: 243 MLRHSFASHLLESSGDLRAVQELLGHADIATTQVYTH-LDFQHLA 286 >gi|306818595|ref|ZP_07452318.1| tyrosine recombinase XerD [Mobiluncus mulieris ATCC 35239] gi|304648768|gb|EFM46070.1| tyrosine recombinase XerD [Mobiluncus mulieris ATCC 35239] Length = 319 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 44/285 (15%), Positives = 90/285 (31%), Gaps = 32/285 (11%) Query: 85 GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHT--------PSSA 133 + ++ +++ + + G ++T + V + +S Sbjct: 28 RGASPHTIAAYQRDLQRYVAYLQILGRDTLAQVTEIDLEGFVRALGDGFASFPPLGSTSV 87 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-----WSE 188 + L + R ++ + N SV+ K E+M+ + S Sbjct: 88 RRCLAAARSWHRYLFDSGSLGANVASSVKPAKLPRRLPETLNLEEMEALLAAASSPGDSN 147 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL---- 244 + R EFL SG R S++ + + + G + + Sbjct: 148 SLRDRALLEFLYASGARISEAMNLVLDDIDFETEPALVRLFGKGRKERISMLGRQACQAL 207 Query: 245 ----------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292 LA + F+N + M+ +A A +A +++ H +R Sbjct: 208 QAYLVRVRPTLAEKGQSRGRVFLNTYGKPMSRQTAWAIIQAAAKRAQIDRPVHPHTLRHC 267 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 AT GA + G +V E YTK + ++ L + S Sbjct: 268 FATHLLQGGADIRVVQELLGHASVTTTEIYTKVSKQMLLEVYASA 312 >gi|56963097|ref|YP_174824.1| phage-related integrase/recombinase [Bacillus clausii KSM-K16] gi|56909336|dbj|BAD63863.1| phage-related integrase/recombinase [Bacillus clausii KSM-K16] Length = 321 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 44/281 (15%), Positives = 97/281 (34%), Gaps = 22/281 (7%) Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY----RKITTKHIRS 121 K+ T + + + + + A + +++ R + + K+T I Sbjct: 21 KEDLTFEKAVELFIRDVKLKNRADATVTFYKNELKGFKRTLKEMNLPIEPAKVTPFMIEE 80 Query: 122 ---GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + L ++R LF + ++ + NP ++ K I P++K+ Sbjct: 81 FAFHMMEEGSKAGAVNARLRAVRALFNFLFKKRLIPENPVADLKLLKNIKGDIIPFSKDQ 140 Query: 179 ----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTI 232 Q G + + +L +G+R + C+ + + + I+ K G + Sbjct: 141 LQRLFNQADRRTFTGLRNYVMMMVMLDTGVRVKELCQIDMVDVLWDDNSIVIRHPKNGYV 200 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINN------DKQKMNATQFSIWFKAKATKAGV---N 283 V + + +K L + NN D ++++ Q + A + Sbjct: 201 RRVPISEETIKALEQYVNHRGQNIGNNALFVTLDDKRISKRQVQNFLSQYGKGASITDVR 260 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 S H R A ++ GA EL G +++ Y Sbjct: 261 CSPHTFRHTFAKMALQGGANMFELQQILGHSSLEMVRVYVH 301 >gi|329119991|ref|ZP_08248663.1| tyrosine recombinase XerD [Neisseria bacilliformis ATCC BAA-1200] gi|327463904|gb|EGF10218.1| tyrosine recombinase XerD [Neisseria bacilliformis ATCC BAA-1200] Length = 290 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 43/279 (15%), Positives = 101/279 (36%), Gaps = 23/279 (8%) Query: 70 TLKWLIS-EYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR 126 T++ LI + + L+ N+ ++ ++ + + + + + + V Sbjct: 4 TIERLIDHLWLQD----RLSANTLAAYRRDLEKTAARLSEQGKGWLDAQSGDLAAAVYRA 59 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + +P S + L++ + L+ W + A +P + PK++ + + + Sbjct: 60 EASPRSQARALSACKRLYGWLLDTGQTAADPTEHLRSPKQEKTLPPVIGEAQIDALLAAP 119 Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGF 241 + + + E + +GLR S++ R + F K G V + + Sbjct: 120 DADTPHGLRDKALLELMYATGLRVSEAVRLRQDEAKLQAGFVSTIGKGGKQRIVPMGEEA 179 Query: 242 MKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVR 290 + L + F++ + ++ + + A AG+ + S HG+R Sbjct: 180 VYWLERYLAQARPQLLKNARCDEIFVSQKRVGISRQLAWMIVEKHAAAAGIRHLSPHGLR 239 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + GA + G ++ E YT+ A Sbjct: 240 HAFATHLVNHGADLRVVQELLGHASISTTEIYTRVAAER 278 >gi|325576773|ref|ZP_08147388.1| site-specific tyrosine recombinase XerC [Haemophilus parainfluenzae ATCC 33392] gi|325160979|gb|EGC73097.1| site-specific tyrosine recombinase XerC [Haemophilus parainfluenzae ATCC 33392] Length = 295 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 37/271 (13%), Positives = 89/271 (32%), Gaps = 20/271 (7%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESR 126 L+++Y L+ ++ +++ + I+ + + + I + Sbjct: 4 LLNQYWDYLRIERQLSPHTLTNYQHQLNAILAILAEKGIQHWQQVNPSVVRLILAESRKH 63 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 S L+++R F + V Q + +NP + PK+ + E +Q+ S Sbjct: 64 GLKEKSLALRLSALRQFFSYLVHQGQMKVNPATGISAPKQSKHLPKNIDAEQVQKLLSND 123 Query: 187 SEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 S+ + R E + SGLR S+ + + + ++ V Sbjct: 124 SKDPIDLRDRAMMELMYSSGLRLSELQGLNLNSINTRVREVRVIGKGNKERIVPFGRYAS 183 Query: 243 KLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293 + + F++ ++ + + G+ + + H +R Sbjct: 184 HAIQQWLKVRPLFNPKDDAIFVSQQGNRLTHRSIQKRMENWGIRQGLNSHLNPHKLRHSF 243 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324 AT +A + + G + + YT Sbjct: 244 ATHMLEASSDLRAVQELLGHSNLSTTQIYTH 274 >gi|323167559|gb|EFZ53265.1| tyrosine recombinase XerC [Shigella sonnei 53G] Length = 298 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 42/278 (15%), Positives = 90/278 (32%), Gaps = 21/278 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SRK 127 + Y + L+ + ++++ + II + + + + + Sbjct: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENVLQSWQQCDVTMVRNFAVRSRRKG 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +S L+++R F W V Q + NP V PK + +DM + Sbjct: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI 127 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243 + R E + +GLR S+ ++HL + K + + + Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187 Query: 244 LLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 + ++ F +D ++++A F K G+ + H +R A Sbjct: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 T ++ + G + + YT D L Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 284 >gi|126663869|ref|ZP_01734864.1| putative tyrosine recombinase [Flavobacteria bacterium BAL38] gi|126624133|gb|EAZ94826.1| putative tyrosine recombinase [Flavobacteria bacterium BAL38] Length = 580 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 40/267 (14%), Positives = 87/267 (32%), Gaps = 16/267 (5%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFK 145 + + ++ ++ F Q +R + +I+ + I + S SA + + + + Sbjct: 309 NYSSSTLRTYCGAFIQFLRYFAFRNPEEISREEIIRFLGSLMERGLSATSGHSMVNGV-Q 367 Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205 + +Q + + RPK++ + T E+ + + +L +GLR Sbjct: 368 FYYQQVLGKRDFTFVLPRPKKEKKLPVVLTMEECLL-IFKVVDNPKHKLLLLIGYGAGLR 426 Query: 206 CSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK----ETFFINN 259 S+ + + +K K V LP + L + F Sbjct: 427 VSEIVSLKWSDILFEEHKIHVKNAKGKKDRMVMLPYSIVSSLQLYRELYKGKLYVFEGQF 486 Query: 260 DKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVD 317 + + + +G+ K + H +R AT + G + G ++ Sbjct: 487 AGEPYSTGSVQQVMRTALKLSGLEKKATVHTLRHSFATHLLENGTDIRYIQQFLGHSSIK 546 Query: 318 QAETYTKGADRIRLGIKNSRRISSVVD 344 YT L +I S +D Sbjct: 547 TTTVYTH------LTKTAVDKIQSPLD 567 >gi|320539384|ref|ZP_08039053.1| site-specific tyrosine recombinase [Serratia symbiotica str. Tucson] gi|320030509|gb|EFW12519.1| site-specific tyrosine recombinase [Serratia symbiotica str. Tucson] Length = 303 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 42/278 (15%), Positives = 87/278 (31%), Gaps = 21/278 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESRKHTP 130 + + + L+ +++S+ + + G ++ + +R K Sbjct: 12 VDAFLRYLKVERQLSPLTQLSYAHQLQALMLLAQSIGVSEWTSLDAAAVRMLAVRSKRAG 71 Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +S L+S+R W V Q + NP + P+ + ++M Q Sbjct: 72 LQSASLALRLSSLRSFLDWLVSQGVLNANPAKGIRTPRSGRHLPKNIDVDEMNQLLDIDL 131 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243 + R E + +GLR S+ +H+ K + L + Sbjct: 132 NDPLAVRDRAMLETMYGAGLRLSELVGLDCRHIDLAAGEIWVMGKGSKERKLPLGRTAVT 191 Query: 244 LLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 L + F++N ++++ F K GV + H +R A Sbjct: 192 WLQHWLAIRELFEPEDDAIFLSNQGRRISPRNVQKRFAEWGVKQGVNSHIHPHKLRHSFA 251 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 T ++ + G + + YT D L Sbjct: 252 THMLESSGDLRAVQELLGHANLTTTQIYTH-LDFQHLA 288 >gi|157265417|ref|YP_001467975.1| phage XerD-like integrase [Thermus phage P74-26] gi|156905312|gb|ABU96955.1| phage XerD-like integrase [Thermus phage P74-26] Length = 327 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 50/284 (17%), Positives = 98/284 (34%), Gaps = 14/284 (4%) Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 + + T++ + E+ K + +ES ++++ +T + Sbjct: 33 WSYREGEAMTIEQALKEFLKEKRLEGKREKTLRWYESTVRYLLKEHLHKPLDALTRNLVV 92 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 ++ P++ + ++R W + EY+ NP +RPK + T ++++ Sbjct: 93 EVLDK-PVAPATLANYDRALRGFVNWLIGVEYLEHNPFKGRKRPKEEFYLKDVLTLDEIK 151 Query: 181 QFKSFWSEGSQPRL----AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ----KTGTI 232 + R L SGLR ++ CR V + + +++ Sbjct: 152 ALFKAAMRDPRYRYRNASILALALGSGLRAAEICRLQVADILWDEMAVRVHGKTGHGVVP 211 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVR 290 +T E L + + + + + S W K +A AG+NK H +R Sbjct: 212 VTRETLRYLRLYLDRERKATSPYLFVHRNRPLTSEVLSHWIKRQAKVAGINKKVGMHLLR 271 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK--GAD-RIRL 331 AT +G L K+ Y AD R RL Sbjct: 272 HTFATNYLKSGGDPFTLQRILRHKSPAMTSRYLHFLTADLRERL 315 >gi|114566378|ref|YP_753532.1| hypothetical protein Swol_0842 [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337313|gb|ABI68161.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 290 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 42/268 (15%), Positives = 85/268 (31%), Gaps = 29/268 (10%) Query: 91 SRISFESYFDQIIRKSGDFD--------YRKITTKHIRSGVESRKHTP---SSAIQFLTS 139 + S+++ Q I+ +R + + ++ + L + Sbjct: 11 TLSSYKTDLSQFFAFLSQKKGINPEEVGVELISHNSVRKYLAQMQEKGLSRATMARKLAA 70 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 +R K+ R+ +A NP +V PK++ + R ++ + + G + R Sbjct: 71 LRSFIKFLCRENILADNPIAAVSTPKQERKLPRFLYTREIDLLMNAPDLSMAAGKRDRAI 130 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254 E L SGLR S+ + + K G V L + L + Sbjct: 131 LETLYASGLRVSELTNLDKPDIDFGEDYIKVLGKGGKERIVPLGSKAREALLLYLQQGRV 190 Query: 255 F-----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAG 301 + F+N + Q+++ + S H +R AT + G Sbjct: 191 YLEAKGQASPALFLNKNGQRLSTRSIRNIINKYVETIAINQKVSPHTLRHSFATHLLNNG 250 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRI 329 A + G + + YT + Sbjct: 251 ADLRSVQELLGHVKLSTTQIYTHLSREK 278 >gi|169632680|ref|YP_001706416.1| site-specific tyrosine recombinase [Acinetobacter baumannii SDF] gi|169151472|emb|CAP00223.1| site-specific tyrosine recombinase [Acinetobacter baumannii] Length = 308 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 45/279 (16%), Positives = 90/279 (32%), Gaps = 27/279 (9%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRK--SGDFDYRKITTKHIRSGVESR---- 126 L+S + K + + ++ ++E + D R + +R + R Sbjct: 10 QLLSMWLKERKIQNQSEHTITAYERDVRSFLEFCELKKVDLRNVEASDLREYLAQRVEQD 69 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + + SS + LTS+R KWA + +Y+ INP + ++ E + Q Sbjct: 70 QLSSSSMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILDQP 129 Query: 187 SEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVEL 237 + + E L SGLR ++ ++ + N ++ V Sbjct: 130 MPEKPVDQQLWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKGNKTRIVPF 189 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAGV--NKS 285 + L + + D+ Q K +A +AGV + Sbjct: 190 GKKAKESLLNWLKIYNIWKGHFDQNASVFISQRGGALTPRQIEKRVKLQAQRAGVNVDLH 249 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R A+ + + G + + YT Sbjct: 250 PHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTH 288 >gi|299769077|ref|YP_003731103.1| site-specific tyrosine recombinase [Acinetobacter sp. DR1] gi|298699165|gb|ADI89730.1| site-specific tyrosine recombinase [Acinetobacter sp. DR1] Length = 310 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 46/279 (16%), Positives = 91/279 (32%), Gaps = 27/279 (9%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRK--SGDFDYRKITTKHIRSGVESR---- 126 L+S + K + + ++ ++E + D R I +R + R Sbjct: 10 QLLSMWLKERKIQNQSEHTITAYERDVKSFLEFCELKQIDLRNIEASDLREYLAQRVEQD 69 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + + SS + LTS+R KWA + +Y+ INP + ++ E + Q Sbjct: 70 QLSSSSMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILDQS 129 Query: 187 SEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVEL 237 + + E L SGLR ++ ++ + N ++ V Sbjct: 130 MPEKPIDQQLWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKGNKTRIVPF 189 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAGV--NKS 285 + L + + + D+ Q K +A +AGV + Sbjct: 190 GKKAKESLLNWLKIYKIWKGHFDQNAFVFISQRGGALTPRQIEKRVKLQAQRAGVNVDLH 249 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R A+ + + G + + YT Sbjct: 250 PHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTH 288 >gi|238925026|ref|YP_002938542.1| integrase/recombinase-like protein [Eubacterium rectale ATCC 33656] gi|259710431|sp|C4ZGY6|XERC_EUBR3 RecName: Full=Tyrosine recombinase xerC gi|238876701|gb|ACR76408.1| integrase/recombinase-like protein [Eubacterium rectale ATCC 33656] Length = 306 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 34/280 (12%), Positives = 79/280 (28%), Gaps = 28/280 (10%) Query: 75 ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPS 131 IS Y + L + ++ Q + D KI + + +E K+ P Sbjct: 8 ISSYLEYCLAQKRLDEKTIKAYRIDLIQFYNEISISDPCKIASYDLEKYIEKMHLKYKPK 67 Query: 132 SAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-- 188 S + + S++ F + + + + + +++F + Sbjct: 68 SVRRKIASIKAFFHYLEYKNIILQNPFNKIQIHFREPVILPKTIPLYIVEKFLFTIYKQR 127 Query: 189 -----------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--GTIITV 235 + E L +G+R S+ C + + I I Sbjct: 128 SAAKTNYQKRNALRDAAIVELLFSTGIRISELCNLKISDVNLIDGVILIYGKGSKERILQ 187 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQ-------KMNATQFSIWFKAKATKAGVNK--SA 286 + +L + + ++ A+ + ++ + Sbjct: 188 IGNSSVLNILKEYKNDFYNEIVQCNHFFSSQSGKPLSDQSVRRMINKYASLSSIDLHITP 247 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 H R AT +A + G +++ + YT A Sbjct: 248 HMFRHTFATSLLEADVDIRYIQEMLGHSSINITQIYTHVA 287 >gi|218264364|ref|ZP_03478221.1| hypothetical protein PRABACTJOHN_03917 [Parabacteroides johnsonii DSM 18315] gi|218222062|gb|EEC94712.1| hypothetical protein PRABACTJOHN_03917 [Parabacteroides johnsonii DSM 18315] Length = 302 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 45/278 (16%), Positives = 94/278 (33%), Gaps = 29/278 (10%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVESR-- 126 I + + + + + ++ Q + ++ +R+ + S Sbjct: 5 IDSFLDCLRYERNYSEYTIGAYSKDLQQFEDFVKEKKEGIFVPEEVDADIVRNWIISLLD 64 Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-----RPWTKEDMQ 180 K +P S + L+S++ FK+ ++Q +V++NP V PK K + + Sbjct: 65 NKISPVSVNRKLSSLKSFFKFLMKQGFVSVNPLRFVTGPKTKKPLPTFVKEKDMEELLDG 124 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 EG + RL E L +G+R S+ + + IK + Sbjct: 125 DGFDEDFEGVRDRLILEMLYDTGVRRSELVGLQDIDIDYDAMLIKVTGKRNKQRLIPFAE 184 Query: 241 FMKLLAMTPIGKE---------TFFINNDKQKMNATQFSIWFKAKATKAGVN----KSAH 287 +K L + FF+ + ++++ K + + S H Sbjct: 185 RLKNLMLAYTEVRNREVGAGSGWFFVRKNGEQLSTGILYTIVKK--KLSDIPTLAKCSPH 242 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 +R AT + GA + + G ++ YT Sbjct: 243 VLRHSFATSMLNNGAELNAVKELLGHSSLASTSIYTHT 280 >gi|326384761|ref|ZP_08206438.1| site-specific tyrosine recombinase XerD [Gordonia neofelifaecis NRRL B-59395] gi|326196569|gb|EGD53766.1| site-specific tyrosine recombinase XerD [Gordonia neofelifaecis NRRL B-59395] Length = 307 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 50/287 (17%), Positives = 89/287 (31%), Gaps = 31/287 (10%) Query: 68 PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGV 123 T+ I+ Y A N+ S+ + G ++T +R+ + Sbjct: 2 AGTVDDAIARYLDHLTVERGSATNTVASYRRDLLRYNTFLAGRGVTTMSEVTEDDVRAFL 61 Query: 124 ESRKHTP----------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 + + SS + L + R K+ + A + SV PK + Sbjct: 62 VALRRGDPERGVPGLADSSVARTLVAARGFHKFCAAEGLTATDVAHSVRPPKPPRRLPKS 121 Query: 174 WTKEDMQQFKSF-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQ 227 +D+ G + R E L G R S+ + L ++ Sbjct: 122 LPIDDVLAILDAAGAVDGPRGLRDRALVELLYSCGARISEVTSLDLDDLDLEHRAVVLRG 181 Query: 228 KTGTIITVELPDGFMKLLAMT---------PIGKETFFINNDKQKMNATQFSIWFKAKAT 278 K G V + ++ + F+N +++ A Sbjct: 182 KGGKERIVPVGGPAIEAVDAYLVRGRPALVKKSTPALFLNIRGGRLSRQSAWQVLVDAAE 241 Query: 279 KAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 +AGV+K S H +R AT D GA + G +V + YT Sbjct: 242 RAGVDKEVSPHTLRHSFATHLLDGGADVRVVQELLGHSSVTTTQVYT 288 >gi|254251586|ref|ZP_04944904.1| Site-specific recombinase XerD [Burkholderia dolosa AUO158] gi|124894195|gb|EAY68075.1| Site-specific recombinase XerD [Burkholderia dolosa AUO158] Length = 316 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 46/302 (15%), Positives = 89/302 (29%), Gaps = 27/302 (8%) Query: 52 TGSTPKREYINSPRKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSG--- 107 + + ++ + + LA N+ ++ + Sbjct: 9 EADGAEGAASPALLASRASIDVFCDALWLEH----GLARNTLDAYRRDLMLFSQWLAATH 64 Query: 108 DFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 D + + +R +S+ + L+ R + WAVR+ + +P L + K+ Sbjct: 65 DAPLDAADEAMVTGYIAARSDGKATSSNRRLSVFRRYYGWAVREHRASADPTLRITSAKQ 124 Query: 167 KTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222 ++ ++ + + R E + SGLR S+ + N Sbjct: 125 AARFPSTLSEAQVEALLGAPDIDTPLGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEG 184 Query: 223 SIKTQKT-GTIITVELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSI 271 ++ V + + F+ M QF Sbjct: 185 VVRVMGKGSKERLVPFGEVAHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFWN 244 Query: 272 WFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 K A A V + S H +R AT + GA + G + + YT A R Sbjct: 245 IIKRHARHADVRAHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVA-RE 303 Query: 330 RL 331 RL Sbjct: 304 RL 305 >gi|153953866|ref|YP_001394631.1| hypothetical protein CKL_1241 [Clostridium kluyveri DSM 555] gi|146346747|gb|EDK33283.1| XerD [Clostridium kluyveri DSM 555] Length = 292 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 35/275 (12%), Positives = 93/275 (33%), Gaps = 20/275 (7%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTPSSAIQ 135 Y + ++ N+ ++ ++ + +++ I + V+ + + Sbjct: 8 YAEQLEKKHMSKNTLDAYIRDINRFYNFIKKREGNLKEVEVVSIMAYVQYLQKEGKAISS 67 Query: 136 FLT---SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SE 188 + S+R +K+ + + + NP L E PK K + T +++ + + Sbjct: 68 IVRNIVSLRNFYKYLMVKGVINENPLLYYEIPKVKHNIPKVLTVDEVDKLLDSPDSTTYK 127 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-TGTIITVELPDGFMKLLAM 247 G + + E + +G++ + + + I+ + V + ++ L Sbjct: 128 GIRDKAMLEIMYAAGMKVMELLTLTIYDIDLKFSYIRCKSLKNKERLVPIGSVAVQYLKN 187 Query: 248 TPIGKETFFINNDKQ--------KMNATQFSIWFKAKATKAGVNKSAH--GVRKFSATIS 297 + I N M+ F K A ++ ++K + +R A Sbjct: 188 YLDIRPQLNIYNLDTLFLNLRGAAMSRQGFWKIVKYYAKESKIDKDINAFTLRHSFAVHL 247 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 GA + G K + + Y+ + ++ Sbjct: 248 LQNGADIKSVQELLGHKDLSATQIYSAVLKKNKIA 282 >gi|16767219|ref|NP_462834.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167553868|ref|ZP_02347612.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167993887|ref|ZP_02574980.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168233881|ref|ZP_02658939.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168822681|ref|ZP_02834681.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194470289|ref|ZP_03076273.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197251815|ref|YP_002148873.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|224585764|ref|YP_002639563.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238912952|ref|ZP_04656789.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|2497413|sp|P55888|XERC_SALTY RecName: Full=Tyrosine recombinase xerC gi|1916339|gb|AAC45778.1| site-specific recombinase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|6960253|gb|AAF33443.1| S. typhimurium site-specific recombinase (XERC) (SP:P55888); contains similarity to Pfam family PF00589 ('Phage' integrase family), score=227.1, E=2.5e-64, N=1 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16422513|gb|AAL22793.1| putative site-specific integrase/recombinase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|194456653|gb|EDX45492.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197215518|gb|ACH52915.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|205321790|gb|EDZ09629.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205328137|gb|EDZ14901.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205332099|gb|EDZ18863.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205340961|gb|EDZ27725.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|224470292|gb|ACN48122.1| tyrosine recombinase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261249072|emb|CBG26933.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267996228|gb|ACY91113.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301160464|emb|CBW19994.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312915067|dbj|BAJ39041.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320088359|emb|CBY98119.1| Tyrosine recombinase xerC [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321225467|gb|EFX50524.1| Tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323132296|gb|ADX19726.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 300 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 46/282 (16%), Positives = 97/282 (34%), Gaps = 21/282 (7%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSG---V 123 L +S + + L+ + ++++ D II +G+ +++ +RS Sbjct: 6 LSQDVSRFLRYLGVERQLSPITLLNYQRQLDAIIALAGETGLKSWQQCDAAIVRSFAVRS 65 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + P+S L+++R F W V Q + NP V PK + +D+ + Sbjct: 66 RRKGLGPASLALRLSALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKNIDVDDVNRLL 125 Query: 184 SFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD 239 + R E + +GLR S+ ++HL + K + + Sbjct: 126 DIDLNDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLPIGR 185 Query: 240 GFMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVR 290 + + + F + + ++++A F K G+ + H +R Sbjct: 186 NAVTWIEHWLDLRGLFASDEEALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLR 245 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 AT ++ + G + + YT D L Sbjct: 246 HSFATHMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 286 >gi|78043985|ref|YP_361456.1| phage integrase family site specific recombinase [Carboxydothermus hydrogenoformans Z-2901] gi|77996100|gb|ABB14999.1| site-specific recombinase, phage integrase family [Carboxydothermus hydrogenoformans Z-2901] Length = 312 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 41/269 (15%), Positives = 87/269 (32%), Gaps = 16/269 (5%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 L L E+ + LA + + + ++ + +G + K I + +P Sbjct: 15 LSQLKEEFLIARQADGLAPRTLEDYRWHIEKFMELTGANPTYEAVRKAILQHLSE-PSSP 73 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFW 186 L ++ F W VR+ Y+ NP + + K +R + E +++ Sbjct: 74 RYRNIKLQYLKAFFNWCVREGYLPANPTDGIRKAKEDISNVRHVSIEAVKKLLAQPDKKT 133 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----ITVELPDGFM 242 G + + +G R S+ + L + I + T+ + + Sbjct: 134 YAGLRDYCLMLVQIDTGARPSELLQIKPDDLNLDAREIYVRADVAKTRIGRTLVISPFTV 193 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQ-------FSIWFKAKATKAGVNKSAHGVRKFSAT 295 + L + +++ N + +S K +AGV + +G+R A Sbjct: 194 QALMRFLKIRPSWWSNEVPLFASENGRQLTAQRWSRIVKRYCEEAGVKVTPYGLRHTFAI 253 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324 G L G + Y + Sbjct: 254 EFLKGGGDPFSLQRILGHTDLTMTRRYVR 282 >gi|182680307|ref|YP_001834453.1| integrase family protein [Beijerinckia indica subsp. indica ATCC 9039] gi|182636190|gb|ACB96964.1| integrase family protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 325 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 48/295 (16%), Positives = 94/295 (31%), Gaps = 35/295 (11%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKH-- 128 LI + A N+ ++ + D T++ IR + + Sbjct: 9 LIEAFLDMIGAERGAARNTLEAYGRDLTDYAQALADRGRSLLDATSEDIRHYLGDLETQG 68 Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---- 183 PSS+ + L+++R ++ + + + +P L +E P+R + T ++++ Sbjct: 69 LKPSSSARRLSAIRQFHRFLASESHRSDDPALILEGPRRSRGLPKTLTMAEVERLLTVSK 128 Query: 184 -----SFWSEGSQPRLAFEFLLY-----SGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TI 232 G + R A L +GLR S+ ++ I + G Sbjct: 129 EGLEDPARPLGERVRAARTACLLELLYATGLRVSELVSLPDSAMRGADPLITIRGKGGRE 188 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKM-----------NATQFSIWFKAKATKAG 281 V LP + + + K + F+ K A AG Sbjct: 189 RLVPLPPVARRAITFYRDLLHQKHLGLSKGGWLFPADSETGYLSRQAFARDLKVVAAAAG 248 Query: 282 VN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 ++ S H +R A+ GA + G + + YT D + Sbjct: 249 IDTARISPHVLRHAFASHLLQNGADLRIVQELLGHADIATTQIYTHVLDERMKAM 303 >gi|62182418|ref|YP_218835.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62130051|gb|AAX67754.1| putative integrase/recombinase, site-specific [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322716911|gb|EFZ08482.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 300 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 46/282 (16%), Positives = 97/282 (34%), Gaps = 21/282 (7%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSG---V 123 L +S + + L+ + ++++ D II +G+ +++ +RS Sbjct: 6 LSQDVSRFLRYLGVERQLSPITLLNYQRQLDAIIALAGEAGLKSWQQCDAAIVRSFAVRS 65 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + P+S L+++R F W V Q + NP V PK + +D+ + Sbjct: 66 RRKGLGPASLALRLSALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKNIDVDDVNRLL 125 Query: 184 SFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD 239 + R E + +GLR S+ ++HL + K + + Sbjct: 126 DIDLNDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLPIGR 185 Query: 240 GFMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVR 290 + + + F + + ++++A F K G+ + H +R Sbjct: 186 NAVTWIEHWLDLRGLFASDEEALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLR 245 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 AT ++ + G + + YT D L Sbjct: 246 HSFATHMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 286 >gi|197262705|ref|ZP_03162779.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197240960|gb|EDY23580.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 300 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 45/282 (15%), Positives = 96/282 (34%), Gaps = 21/282 (7%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSG---V 123 L +S + + L+ + ++++ D II +G+ +++ +RS Sbjct: 6 LSQDVSRFLRYLGVERQLSPITLLNYQRQLDAIIALAGETGLKSWQQCDAAIVRSFAVRS 65 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + P+S L+++R F W V Q + NP V PK + +D+ + Sbjct: 66 RRKGLGPASLALRLSALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKNIDVDDVNRLL 125 Query: 184 SFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD 239 + R E + +GLR S+ ++HL + K + + Sbjct: 126 DIDLNDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLPIGR 185 Query: 240 GFMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVR 290 + + + F + + ++++ F K G+ + H +R Sbjct: 186 NAVTWIEHWLDLRGLFASDEEALFLSKLGKRISVRNVQKRFAEWGIKQGLNSHVHPHKLR 245 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 AT ++ + G + + YT D L Sbjct: 246 HSFATHMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 286 >gi|119357566|ref|YP_912210.1| tyrosine recombinase XerD [Chlorobium phaeobacteroides DSM 266] gi|119354915|gb|ABL65786.1| tyrosine recombinase XerD [Chlorobium phaeobacteroides DSM 266] Length = 304 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 43/277 (15%), Positives = 102/277 (36%), Gaps = 26/277 (9%) Query: 74 LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHT- 129 + + + + N+R+S+ + + + + +T IR + T Sbjct: 11 YLENFLNHLLIERNFSQNTRVSYRNDLHRYLLTVQETMKPITSVTASDIRQFISELHETG 70 Query: 130 --PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 P++ + ++++R LF++ V + + NP ++ +PK+ T E+ + Sbjct: 71 LEPATIARNISAIRSLFRFLVIEHLLEANPAENIHQPKQAKNLPSVLTIEETLRLLEAPI 130 Query: 188 EG-------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTII------ 233 + + EFL +G+R S+ Q L ++ K Sbjct: 131 LQHPPGKYLLRDKAILEFLYATGVRVSELTELQQQSLFLEAGFVRILGKGSKERLVPIGL 190 Query: 234 ----TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287 ++ +++ + ++ F+N +K++ + A+ +G+ K S H Sbjct: 191 SAINSINRYRTELRIGLINRNSQDYVFLNARGKKLSRMAIYSMVQEYASLSGIEKKISPH 250 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT + GA + G ++ + YT Sbjct: 251 TLRHTFATHLLEGGADLRAVQEMLGHSSILATQLYTH 287 >gi|145224084|ref|YP_001134762.1| site-specific tyrosine recombinase XerD [Mycobacterium gilvum PYR-GCK] gi|145216570|gb|ABP45974.1| tyrosine recombinase XerD [Mycobacterium gilvum PYR-GCK] Length = 314 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 46/282 (16%), Positives = 91/282 (32%), Gaps = 36/282 (12%) Query: 78 YRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKH----- 128 Y +A N+ S+ + G D +T + + + + Sbjct: 14 YLDHLAIERGVAANTLSSYRRDLRRYAEHLKARGVGDLAAVTETDVSEFLVALRLGDPDG 73 Query: 129 -----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + SA + L ++R L ++A + AI+ V+ P + + +++ Sbjct: 74 GVVPLSAVSAARALIAVRGLHRFAAAEGIAAIDVARDVKPPTPSRRLPKSLSIDEVLALL 133 Query: 184 SFWSEGS--------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIIT 234 S + R E L +G R S++ + + + S+ K G Sbjct: 134 EAAGGDSEADSPLTLRNRALLELLYSTGARISEAVGLDIDDVDTSARSVLLRGKGGKQRL 193 Query: 235 VELPDGFMKLLAMTPIGKETF-----------FINNDKQKMNATQFSIWFKAKATKAGVN 283 + + + L + F+N +++ + A +AGV Sbjct: 194 IPIGRPAVTALETYLVRGRPDLARRGRGTPAIFLNARGGRLSRQSAWQVLQDAAGRAGVT 253 Query: 284 --KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 S H +R AT D GA + G +V + YT Sbjct: 254 ATVSPHVLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYT 295 >gi|118617318|ref|YP_905650.1| site-specific tyrosine recombinase XerD [Mycobacterium ulcerans Agy99] gi|118569428|gb|ABL04179.1| integrase/recombinase, XerD [Mycobacterium ulcerans Agy99] Length = 313 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 45/292 (15%), Positives = 93/292 (31%), Gaps = 36/292 (12%) Query: 68 PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSGV 123 TL + Y +A N+ S+ + + D D K+ + + Sbjct: 3 TLTLDTQLQGYLDHLAIERGVAANTLSSYRRDLRRYSKHLEDRGITDLAKVGEDDVSEFL 62 Query: 124 ESRKH----------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 + + + SA + L ++R L ++A + A++ +V P + Sbjct: 63 VALRRGDPESGVLGLSAVSAARALIAVRGLHRFAAAEGLAALDVARAVRPPTPGRRLPKS 122 Query: 174 WTKEDMQQFKS--------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225 T +++ + R E L +G R S++ V + ++ Sbjct: 123 LTIDEVLALLEGAGGDNPADGPLTLRNRALLELLYSTGSRISEAVGLDVDDIDTQARTVL 182 Query: 226 -TQKTGTIITVELPDGFMKLLAMTPIGKET-----------FFINNDKQKMNATQFSIWF 273 K G V + ++ L + F+N +++ Sbjct: 183 LQGKGGKQRLVPVGRPAVQALDAYLVRGRPELARRGRGTPAIFLNARGGRLSRQSAWQVL 242 Query: 274 KAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + A +A + S H +R AT + GA + G +V + YT Sbjct: 243 QDAAERADITSGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYT 294 >gi|59800775|ref|YP_207487.1| hypothetical protein NGO0329 [Neisseria gonorrhoeae FA 1090] gi|194098059|ref|YP_002001107.1| XerD [Neisseria gonorrhoeae NCCP11945] gi|239998519|ref|ZP_04718443.1| XerD [Neisseria gonorrhoeae 35/02] gi|240013644|ref|ZP_04720557.1| XerD [Neisseria gonorrhoeae DGI18] gi|240016083|ref|ZP_04722623.1| XerD [Neisseria gonorrhoeae FA6140] gi|240117462|ref|ZP_04731524.1| XerD [Neisseria gonorrhoeae PID1] gi|240120714|ref|ZP_04733676.1| XerD [Neisseria gonorrhoeae PID24-1] gi|240123018|ref|ZP_04735974.1| XerD [Neisseria gonorrhoeae PID332] gi|240125270|ref|ZP_04738156.1| XerD [Neisseria gonorrhoeae SK-92-679] gi|240127724|ref|ZP_04740385.1| XerD [Neisseria gonorrhoeae SK-93-1035] gi|268594379|ref|ZP_06128546.1| tyrosine recombinase xerD [Neisseria gonorrhoeae 35/02] gi|268603162|ref|ZP_06137329.1| tyrosine recombinase xerD [Neisseria gonorrhoeae PID1] gi|268681643|ref|ZP_06148505.1| tyrosine recombinase xerD [Neisseria gonorrhoeae PID332] gi|268683870|ref|ZP_06150732.1| tyrosine recombinase xerD [Neisseria gonorrhoeae SK-92-679] gi|268686113|ref|ZP_06152975.1| tyrosine recombinase xerD [Neisseria gonorrhoeae SK-93-1035] gi|293399522|ref|ZP_06643675.1| tyrosine recombinase XerD [Neisseria gonorrhoeae F62] gi|59717670|gb|AAW89075.1| putative integrase/recombinase [Neisseria gonorrhoeae FA 1090] gi|193933349|gb|ACF29173.1| XerD [Neisseria gonorrhoeae NCCP11945] gi|268547768|gb|EEZ43186.1| tyrosine recombinase xerD [Neisseria gonorrhoeae 35/02] gi|268587293|gb|EEZ51969.1| tyrosine recombinase xerD [Neisseria gonorrhoeae PID1] gi|268621927|gb|EEZ54327.1| tyrosine recombinase xerD [Neisseria gonorrhoeae PID332] gi|268624154|gb|EEZ56554.1| tyrosine recombinase xerD [Neisseria gonorrhoeae SK-92-679] gi|268626397|gb|EEZ58797.1| tyrosine recombinase xerD [Neisseria gonorrhoeae SK-93-1035] gi|291610091|gb|EFF39213.1| tyrosine recombinase XerD [Neisseria gonorrhoeae F62] gi|317163795|gb|ADV07336.1| hypothetical protein NGTW08_0364 [Neisseria gonorrhoeae TCDC-NG08107] Length = 291 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 45/275 (16%), Positives = 97/275 (35%), Gaps = 19/275 (6%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTP 130 LI ++ L+ N+ S+ ++I R+ + + + V Sbjct: 5 LIDRLLETLWLDRRLSRNTLDSYRRDLEKIARRLSLCGRTLKDADEADLAAAVYVDGEQR 64 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---- 186 SS + L++ + L+ W R+ A NP ++ PK T++ + + + Sbjct: 65 SSQARALSACKRLYVWMEREGMRADNPTRLLKPPKIDRNIPTLITEQQISRLLAAPDTDT 124 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-----------IKTQKTGTIITV 235 G + + E + +GLR S++ ++ + + + V Sbjct: 125 PHGLRDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITTLGKGDKQRMVPMGQESAYWV 184 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294 E + L + + F++ K ++ + K A +AG+ + S H +R A Sbjct: 185 ERYYTEARPLLLKGRSCDALFVSQKKTGISRQLAWMIVKEYAGRAGIGHISPHSLRHAFA 244 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 T G + G ++ + YT A+ Sbjct: 245 THLVRHGLDLRVVQDMLGHADLNTTQIYTHVANVR 279 >gi|169795024|ref|YP_001712817.1| site-specific tyrosine recombinase [Acinetobacter baumannii AYE] gi|294858572|ref|ZP_06796341.1| site-specific tyrosine recombinase [Acinetobacter sp. 6013150] gi|301345401|ref|ZP_07226142.1| site-specific tyrosine recombinase [Acinetobacter baumannii AB056] gi|301511585|ref|ZP_07236822.1| site-specific tyrosine recombinase [Acinetobacter baumannii AB058] gi|169147951|emb|CAM85814.1| site-specific tyrosine recombinase [Acinetobacter baumannii AYE] Length = 308 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 45/279 (16%), Positives = 90/279 (32%), Gaps = 27/279 (9%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRK--SGDFDYRKITTKHIRSGVESR---- 126 L+S + K + + ++ ++E + D R + +R + R Sbjct: 10 QLLSMWLKERKIQNQSEHTITAYERDVRSFLEFCELKKVDLRNVEASDLREYLAQRVEQD 69 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + + SS + LTS+R KWA + +Y+ INP + ++ E + Q Sbjct: 70 QLSSSSMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILDQP 129 Query: 187 SEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVEL 237 + + E L SGLR ++ ++ + N ++ V Sbjct: 130 MPEKPIDQQLWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKGNKTRIVPF 189 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAGV--NKS 285 + L + + D+ Q K +A +AGV + Sbjct: 190 GKKAKESLLNWLKIYNIWKGHFDQNASVFISQRGGALTPRQIEKRVKLQAQRAGVNVDLH 249 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R A+ + + G + + YT Sbjct: 250 PHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTH 288 >gi|150389215|ref|YP_001319264.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF] gi|149949077|gb|ABR47605.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF] Length = 354 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 31/255 (12%), Positives = 88/255 (34%), Gaps = 18/255 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----KHTPSSAIQFLTSM 140 + ++ S+ + + + + +T + + + +++ + A Q L+++ Sbjct: 91 KGYSPKTKKSYIGHVKRFLGFINNKP-EVLTKQDVEKYMYHLLNVQENSHAFANQALSAI 149 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200 + ++ +++++ V + RPK++ ++ ++ + + + Sbjct: 150 KFYYQHSLKKDKV----LYDLPRPKKEKTLPNILSQREVLSILDSVN-NIKHKSILLLTY 204 Query: 201 YSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN 258 +GLR + R V + ++ ++ K L + + L + ++ Sbjct: 205 SAGLRIGEVVRLKVGDIDSDRMLIHVRQGKGRKDRYTILSEVALSTLRKYAMIEKPKDWL 264 Query: 259 ND----KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYG 312 + F +A V K S H +R AT + G + G Sbjct: 265 FPGGKENCFLTERSVQKIFSVACKRAKVKKHASVHSLRHSFATHLLEGGTDLRYIQELLG 324 Query: 313 WKTVDQAETYTKGAD 327 + E YT ++ Sbjct: 325 HSSSKTTEIYTHVSE 339 >gi|312142439|ref|YP_003993885.1| integrase family protein [Halanaerobium sp. 'sapolanicus'] gi|311903090|gb|ADQ13531.1| integrase family protein [Halanaerobium sp. 'sapolanicus'] Length = 380 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 53/361 (14%), Positives = 104/361 (28%), Gaps = 48/361 (13%) Query: 12 TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSA--LTGSTPKREYINSPRKKPT 69 +T G + G TF + + ++ Sbjct: 3 HIRKTESGNYEVFMDMGKDPATGKRNRISKTFNTKREAKDWVAKKRQEKTMGIGTSLTKI 62 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH 128 +++ + + + L+ + +E II G +++ HI+S + Sbjct: 63 SVEKYLKRWLEDYALPKLSPTTYAGYEMIVTKHIIPALGALKLKEVKPLHIQSYQNKKLK 122 Query: 129 TPS-----------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 + +Q + FK AV + ++ NP +V P + IR + E Sbjct: 123 KGRLDGKEGGLSKKTVLQHHRILNRAFKQAVLWQLISYNPVKAVPAPSPEKPEIRTLSIE 182 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI---------------- 221 +++ + S + +G+R + G H+ N Sbjct: 183 EVEHLLNKAG-NSWLYYFIYVAVNTGMRRGELLGLGWNHIDFNGKTIQVTRTLVKTKKTG 241 Query: 222 FSIKTQKTGTIIT---------------VELPDGFMKLLAMTPIGKETFFINNDKQKMNA 266 K K + + L F +D K+ Sbjct: 242 MVYKGPKNKSSRRVISIAEDDTKILKKLKIKQNENKLLFGPEYQNNNLVFCKSDGSKIYP 301 Query: 267 TQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 + FK A + G+N S H +R AT+ AG + G T+ +TY+ Sbjct: 302 NTTTNRFKLLAKRIGLNSVSLHDLRHTHATLMLQAGVHPKVVQERLGHSTITTTLDTYSH 361 Query: 325 G 325 Sbjct: 362 V 362 >gi|260461664|ref|ZP_05809911.1| tyrosine recombinase XerD [Mesorhizobium opportunistum WSM2075] gi|259032734|gb|EEW33998.1| tyrosine recombinase XerD [Mesorhizobium opportunistum WSM2075] Length = 305 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 49/306 (16%), Positives = 95/306 (31%), Gaps = 42/306 (13%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES---RKHTP 130 I + + A N+ S+ + + D IR+ ++ R P Sbjct: 7 IEAFLEMMSAERGAAENTLSSYRRDLEDASNEI-DGGLAGAAAADIRAYLDDIAARGFAP 65 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----- 185 +S + L+++R FK+ + +P +++ PK+ + ++ D + Sbjct: 66 TSQARKLSAIRQFFKFLYAEGLRGDDPTGTLDSPKKGRPLPKTMSEADTGRLIDRAATEA 125 Query: 186 ---------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITV 235 + E L +GLR S+ V Q + F + K V Sbjct: 126 GDAGLGHADRLAALRLHALVEVLYATGLRVSELVGLPVTVAQRDDRFFMVRGKGDKERMV 185 Query: 236 ELPDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--- 282 L + F +D ++ F+ K A +AG+ Sbjct: 186 PLSAKARAAMRTWLAARAGVPAFAESPFLFPAASDSGYLSRQVFARDLKGLAARAGIASA 245 Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342 S H +R A+ GA + G + + YT + R+ + Sbjct: 246 KVSPHVLRHAFASHLLQNGADLRAVQQLLGHADISTTQIYTHVLEE---------RLVRL 296 Query: 343 VDSDDP 348 V+ P Sbjct: 297 VNDHHP 302 >gi|240851370|ref|YP_002972773.1| integrase /recombinase xerD [Bartonella grahamii as4aup] gi|240268493|gb|ACS52081.1| integrase /recombinase xerD [Bartonella grahamii as4aup] Length = 312 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 39/290 (13%), Positives = 92/290 (31%), Gaps = 33/290 (11%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVES 125 +I + + + ++ +++ + + + + S + + Sbjct: 4 GAVIDHFLEMMSAERGASPHTLAAYQHDLQWAQDELSSHSVSLFSAQKEDLIALLSLMHT 63 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK--------- 176 SS + L+++R +++ + A +P ++ P++ + ++ Sbjct: 64 FGFAASSQARRLSTLRQFYQFLYAEGLRADDPSHDIDAPRQGRPLPKIMSEDAVIKLLDL 123 Query: 177 -----EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTG 230 + + +L E L +GLR S+ VQ ++ +SI K Sbjct: 124 AQLEVNQADYGSKDYLRALRLQLLSEMLYATGLRISELVSLPVQAVRGKAYSILVRGKGK 183 Query: 231 TIITVELPDGFMKLLAMTPI---------GKETFFINNDKQKMNATQFSIWFKAKATKAG 281 V L ++L F N++ + + K A +AG Sbjct: 184 KERMVLLSKKAYQVLLQWLNLRDQGKDVASPYLFPANSETGYIARQVVARELKNLARRAG 243 Query: 282 VN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 + S H +R A+ GA + G + + YT + Sbjct: 244 IESDSFSPHVLRHAFASHLLQNGADLRAVQHLLGHSDIATTQIYTHVLEE 293 >gi|314939813|ref|ZP_07847031.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0133a04] gi|314941456|ref|ZP_07848346.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0133C] gi|314949549|ref|ZP_07852882.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0082] gi|314992246|ref|ZP_07857685.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0133B] gi|314995374|ref|ZP_07860479.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0133a01] gi|313590420|gb|EFR69265.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0133a01] gi|313593214|gb|EFR72059.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0133B] gi|313599741|gb|EFR78584.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0133C] gi|313640909|gb|EFS05489.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0133a04] gi|313644077|gb|EFS08657.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0082] Length = 372 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 37/343 (10%), Positives = 95/343 (27%), Gaps = 41/343 (11%) Query: 29 HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA 88 G R ++ T A + + E T +K + + + +L Sbjct: 16 DGSRKKVEKVGGDTRPEAEAALRKVLSDIDETGQYFLGTDTRVKQYLDFWMEEYVKLNLK 75 Query: 89 VNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF---LTSMRVLF 144 N+ ++ I G ++ +++ + + S + ++ Sbjct: 76 YNTYENYRFTIKNHINGYLGKKKLTDLSPALLQNFINAEFKKGYSKKTMTITHSVLKNAL 135 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGI------RPWTKEDMQQFKSFWSEGSQPRLAFEF 198 AV + + + + + + ED EG + Sbjct: 136 NMAVYPWGLIKQNPMLYVKIPKYEARPTTKKDLKIISLEDFDHMLEITPEGHPFYIPLNI 195 Query: 199 LLYSGLRCSDSCRAGVQHLQNN----------------IFSIKTQKTGTIITVELPDGFM 242 Y+G+R + C + + + + + T+ + + Sbjct: 196 GFYTGMRVGEVCGLTWDDVDFSNGTITVEKQMVKNDGAWVYGTPKTSSSNRTIFIGQTLL 255 Query: 243 KLLAMTPIGKETFFINNDKQKM--------------NATQFSIWFKAKATKAGVNKSAHG 288 +L + + K + + + + ++ + H Sbjct: 256 AILKKHKKQQLENRMKYGKLYIDSNAVCTKEDGELVTPSVVKWNTRRISNALSLSFNFHS 315 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330 +R AT+ + GA E+ G + TY+ D++R Sbjct: 316 LRHTHATLLLENGAKMKEISERLGHSRISITMDTYSHVTDKMR 358 >gi|262278120|ref|ZP_06055905.1| site-specific recombinase XerC [Acinetobacter calcoaceticus RUH2202] gi|262258471|gb|EEY77204.1| site-specific recombinase XerC [Acinetobacter calcoaceticus RUH2202] Length = 310 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 45/279 (16%), Positives = 91/279 (32%), Gaps = 27/279 (9%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRK--SGDFDYRKITTKHIRSGVESR---- 126 L+S + K + + ++ ++E + D R + +R + R Sbjct: 10 QLLSMWLKERKIQNQSEHTITAYERDVKSFLEFCDLKQIDLRNVEASDLREYLAQRVEQD 69 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + + SS + LTS+R KWA + +Y+ INP + ++ E + Q Sbjct: 70 QLSSSSMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILDQP 129 Query: 187 SEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVEL 237 + + E L SGLR ++ ++ + N ++ V Sbjct: 130 MPEKPVDQQLWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKGNKTRIVPF 189 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAGV--NKS 285 + L + + + D+ Q K +A +AGV + Sbjct: 190 GKKAKESLLNWLKIYKIWKGHFDQNAFVFISQRGGVLTPRQIEKRVKLQAQRAGVNVDLH 249 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R A+ + + G + + YT Sbjct: 250 PHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTH 288 >gi|330836616|ref|YP_004411257.1| Tyrosine recombinase xerC [Spirochaeta coccoides DSM 17374] gi|329748519|gb|AEC01875.1| Tyrosine recombinase xerC [Spirochaeta coccoides DSM 17374] Length = 309 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 44/280 (15%), Positives = 84/280 (30%), Gaps = 27/280 (9%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY-------RKITTKHIRSG 122 + L+ EYR+ L+ + + + + I+ I G Sbjct: 6 ISQLLEEYREHLLLERRLSPATVNVYVPVVREYVSFLETRGIGAEEAQADTISGYFIHKG 65 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + + ++++R ++ + + NP ++ PK R + + Sbjct: 66 QAGLGT--RTLARNMSALRSFHRFLLLNDIRNDNPFELLDSPKLPRTLPRTMDYDSVDDI 123 Query: 183 KSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KTGTIITVE 236 + R FE + GLR S+ ++ ++ K V Sbjct: 124 LHEMELDDAIYARRDRAIFEVIYSCGLRVSELASLRIEDYSPESRLLRITGKRNKQRIVP 183 Query: 237 LPDGFMKLLAMTPIGKETFFI-----------NNDKQKMNATQFSIWFKAKATKAGVNKS 285 + D +L+ I FI N Q ++ FK + GV Sbjct: 184 VGDVAAELIDEYIISVRPAFIPKGRSSRFLFLNRYGQSLSRVMIWKLFKKYCMRIGVEAK 243 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 H +R AT AGA + G + + YT Sbjct: 244 VHTLRHSYATHLLKAGADLRSVQELLGHSDIRTTQIYTHV 283 >gi|161505543|ref|YP_001572655.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160866890|gb|ABX23513.1| hypothetical protein SARI_03708 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 300 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 45/282 (15%), Positives = 96/282 (34%), Gaps = 21/282 (7%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSG---V 123 L +S + + L+ + ++++ D II +G+ +++ +R Sbjct: 6 LSQDVSRFLRYLGVERQLSPITLLNYQRQLDAIIALAGEAGLKSWQQCDAVMVRGFAVRS 65 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + P+S L+++R F W V Q + NP V PK + +D+ + Sbjct: 66 RRKGLGPASLALRLSALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKNIDVDDVNRLL 125 Query: 184 SFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD 239 + R E + +GLR S+ ++HL + K + + Sbjct: 126 DIDLNDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLPIGR 185 Query: 240 GFMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVR 290 + + + F + + ++++A F K G+ + H +R Sbjct: 186 NAVTWIEHWLDLRGLFASDEEALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLR 245 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 AT ++ + G + + YT D L Sbjct: 246 HSFATHMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 286 >gi|83592556|ref|YP_426308.1| site-specific tyrosine recombinase XerC [Rhodospirillum rubrum ATCC 11170] gi|83575470|gb|ABC22021.1| tyrosine recombinase XerC subunit [Rhodospirillum rubrum ATCC 11170] Length = 330 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 35/268 (13%), Positives = 79/268 (29%), Gaps = 27/268 (10%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFD--------YRKITTKHIRSGVESRKHTPSSA--- 133 + ++ ++ + D+ + R+ + +R S Sbjct: 46 RRASRHTLDAYGRDLAAFLTFLRDYRGEEPGLATLASLGPADFRAYMAARLTQGLSRPSM 105 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-------SFW 186 + L+++R LF+W R+ + ++ P++ + ++ + Sbjct: 106 ARALSTLRNLFRWLDREGVLRNGAIATIRSPRQPQAVPKALSESEALDALSVASDLQDDP 165 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246 + F L GLR ++ L + T K V L ++ LA Sbjct: 166 WLAKRDLALFTLLYGCGLRLGEALDLDRGDLPSGEVMRITGKGRKERLVPLLPVVVEALA 225 Query: 247 MTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATIS 297 +D +++N + G+ + H +R AT Sbjct: 226 DYLAACPFAGGPDDPLFLGSRGKRLNPGVVQRQMRRLRGFLGLPETATPHALRHSFATHL 285 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKG 325 G + G ++ + YTK Sbjct: 286 LAQGGDLRTIQELLGHASLSTTQRYTKV 313 >gi|330994361|ref|ZP_08318288.1| Tyrosine recombinase xerC [Gluconacetobacter sp. SXCC-1] gi|329758556|gb|EGG75073.1| Tyrosine recombinase xerC [Gluconacetobacter sp. SXCC-1] Length = 388 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 48/350 (13%), Positives = 95/350 (27%), Gaps = 20/350 (5%) Query: 14 ERTRHGKIIYYFRKGHGRRIRL------PYPHESTFIPAYM---SALTGSTPKREYINSP 64 G+ +Y G R+R P + A + S Sbjct: 32 RVWPSGRKVYVIHYRSGGRLRRYTIGQHGSPWTADLARDEAIRILARVHTGENPADKRSD 91 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSGV 123 +K T+ + L +R + + I K G + ++ + Sbjct: 92 DRKAMTVASFSRRFLDEYVDVHLKPRTRGEYRRSVELFIVPKFGSWRMADLSRAEVVEFH 151 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 S +H P A + L + +F A + + E + D Sbjct: 152 GSFRHIPYQANRTLGVLSKMFSLADLWGIRQDGVNPCRGVKRYREERRERFLTWDEYARL 211 Query: 184 -----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVE 236 + + A L +G R + H+ ++ + Sbjct: 212 GGSLDEAAEDMPEAARAIRLLALTGCRLREIQTLQWAHVWLGEAELRLPDSKTGAKTVQL 271 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSAT 295 L A + + I K T ++ AG++ H +R A+ Sbjct: 272 GTAAVDVLKATRRLPDNPYVITGRKAGEYLTDLQKPWRRIRKAAGLDGVRLHDLRHSFAS 331 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK--GADRIRLGIKNSRRISSVV 343 + + GA + G + Y + R + ++RISS + Sbjct: 332 DALEMGADLTMIGRMLGHSDIKTTSRYAHLKRENVKRSTDQVAQRISSAL 381 >gi|239917914|ref|YP_002957472.1| tyrosine recombinase XerD [Micrococcus luteus NCTC 2665] gi|239839121|gb|ACS30918.1| tyrosine recombinase XerD [Micrococcus luteus NCTC 2665] Length = 321 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 46/292 (15%), Positives = 83/292 (28%), Gaps = 39/292 (13%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYF---DQIIRKSGDFDYRKITTKHIRSGVESR 126 L + LA N+ ++ + + +G + H+ V++ Sbjct: 11 LAAPFRRHLDHLAVERGLAENTLAAYRRDLARYRRWLEAAGVRAPGDVDPGHVAGFVQAL 70 Query: 127 KHT--------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 SA + L ++R L ++ + +P V PK T R E Sbjct: 71 ATGDDGGRPLAVRSAARVLAAVRGLHRFWALEGLAETDPARDVHPPKPGTRLPRALPVEQ 130 Query: 179 MQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---- 230 + G + R EFL +G R S+ V + + Sbjct: 131 VSALLDAVPTDTPAGLRDRALLEFLYGTGARISEVVGLDVDDVVGLAQTGDDGGQPVVRL 190 Query: 231 -----TIITVELPDGFMKLLAMTPIGKETFFI------------NNDKQKMNATQFSIWF 273 V + L + + N +++ Sbjct: 191 FGKGSKERVVPIGSYAAAALDAWLVRGRPTIMAGAARSTPALFVNACGGRLSRQSAWAVL 250 Query: 274 KAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 K A +AG+ + S H +R AT GA + G +V + YT Sbjct: 251 KRAAERAGLEADVSPHTLRHCFATHLLAGGADVRVVQELLGHASVTTTQVYT 302 >gi|114764172|ref|ZP_01443410.1| tyrosine recombinase [Pelagibaca bermudensis HTCC2601] gi|114543324|gb|EAU46340.1| tyrosine recombinase [Roseovarius sp. HTCC2601] Length = 308 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 39/289 (13%), Positives = 88/289 (30%), Gaps = 29/289 (10%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSG 122 + + + +A + N+ ++ + + I G ++TT +R+ Sbjct: 10 RDALESWLTAARALKGNSENTITAYRADVLEFIVFLTSHHAEPQGLAPLARVTTPDMRAF 69 Query: 123 VESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW----- 174 + + + + L++++ ++W E + PK + + RP Sbjct: 70 LAHLRGQGVGSRTMARKLSAVKSFYRWLAELEGFEPTAVMMARAPKFQKKLPRPLAEDAA 129 Query: 175 --TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 + ++ + G++ L GLR S++ + L K G Sbjct: 130 KAMIDTVEMQAADSWIGARDAAVVTLLYGCGLRISEALGLRGRDLPLGESLRIVGKGGKE 189 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKM-------NATQFSIWFKAKATKAGVNKS 285 V + + L + N +A + G+ + Sbjct: 190 RIVPVLPIARRALDTYLRLCPYDPEPDAPVFRGKRGGALNPRLIQKVTEAARLQLGLPAT 249 Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R AT AG + G ++ + YT D + L Sbjct: 250 ATPHAMRHSFATHLLAAGGDLRAIQELLGHASLSTTQAYT-SVDEVHLM 297 >gi|303248297|ref|ZP_07334559.1| integrase family protein [Desulfovibrio fructosovorans JJ] gi|302490322|gb|EFL50234.1| integrase family protein [Desulfovibrio fructosovorans JJ] Length = 331 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 41/296 (13%), Positives = 92/296 (31%), Gaps = 32/296 (10%) Query: 58 REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117 + +P T+ + Y + + + ++ DQ T + Sbjct: 9 EGRGPATPARPETVAAFLD-YLAAQ--KGYSPATLAAYGVDLDQFEEFLRGRGISLATPE 65 Query: 118 HIRSGV--------ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169 + R+ +S + L+++R F++ +R++ VA +P ++ PK Sbjct: 66 KVAREHGRGFLAELHRRREAKTSMGRKLSALRGFFRYMLRKKLVAADPLAGLKNPKTDKR 125 Query: 170 GIRPW---------TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220 + + E + E L SGLR +++ + + Sbjct: 126 QPKALNVDEAVALVSPAPGAPAADGSREACRDLALAELLYGSGLRVAEAVGLDLDDVSIA 185 Query: 221 IFSIKTQKT----------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS 270 + + ++ FF+ + ++N Q + Sbjct: 186 QGVARVYGKGGKERLAPLSDASRERLREYAMRRAEFTPDPREQAFFLGSRGGRLNRRQAA 245 Query: 271 IWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 A A +AG+ + H +R AT ++GA + G + + YT Sbjct: 246 RIVDALAREAGIAKHTHPHMLRHSFATHLLESGADMRSVQELLGHARLSTTQRYTH 301 >gi|269137482|ref|YP_003294182.1| site-specific recombinase XerC [Edwardsiella tarda EIB202] gi|267983142|gb|ACY82971.1| site-specific recombinase XerC [Edwardsiella tarda EIB202] gi|304557555|gb|ADM40219.1| Tyrosine recombinase XerC [Edwardsiella tarda FL6-60] Length = 303 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 39/278 (14%), Positives = 87/278 (31%), Gaps = 21/278 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIR---SGVESRK 127 ++ + + L+ + ++ G D+ + T +R + + Sbjct: 12 VAAFLQMMRVERQLSPRTVETYRRQLAASAALLLEGGLCDWAALDTTRVRSLVARSRRQG 71 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 P+S L+++R W V + + NP V P++ + +D+ + Sbjct: 72 LEPASLALRLSALRSFLDWQVSRGALTANPAKGVAAPRQGRHLPKNLDVDDVNRLLDIDE 131 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243 + + R E + GLR S+ +H+ K + + ++ Sbjct: 132 GDTLAVRDRAMLEVMYGGGLRLSELVGLDCRHVDLTTGEVWVLGKGSKERRLPVGREAVR 191 Query: 244 LLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 L + F++ +++ F K GV + H +R A Sbjct: 192 WLQTWLSLRLSLQPQDDALFVSRLGGRISPRSVQKRFAEWGVKQGVTSHIHPHKLRHSFA 251 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 T ++ + G + + YT D L Sbjct: 252 THMLESSGDLRAVQELLGHANLSTTQIYTH-LDFQHLA 288 >gi|254454192|ref|ZP_05067629.1| tyrosine recombinase XerC [Octadecabacter antarcticus 238] gi|198268598|gb|EDY92868.1| tyrosine recombinase XerC [Octadecabacter antarcticus 238] Length = 301 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 38/284 (13%), Positives = 84/284 (29%), Gaps = 29/284 (10%) Query: 77 EYRKSAHW-GSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSGVESRK 127 ++ A N+ ++++ + G +IT +R+ + S + Sbjct: 7 DWLDHQRALNGAAANTITAYQTDLLGFLNFMTTYHGEAQGLGPISRITVSDMRAWMASER 66 Query: 128 HTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 +A + L++++ ++W +E LS PK + + RP + + Sbjct: 67 GRGVAARSLARSLSAVKSFYRWLADREGFEPTAVLSTRSPKFQKKLPRPLAVDGARAMID 126 Query: 185 F-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237 ++ L GLR S++ + K G V + Sbjct: 127 TVELQAREPWIAARDVAVVTLLYGCGLRISEALGLTPTDVPLPATLRIIGKGGKERLVPV 186 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQ-------KMNATQFSIWFKAKATKAGVNKS--AHG 288 + + + + + G+ + H Sbjct: 187 IPAARAAVNAYLDACPHQLTADQPIFRGSRGGPLYPKAIQNVMASSRMQLGLPATATPHA 246 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 +R AT +AG + G ++ ++YT D RL Sbjct: 247 MRHSFATHLLNAGGDLRSIQELLGHASLSTTQSYT-AVDTARLM 289 >gi|108799908|ref|YP_640105.1| site-specific tyrosine recombinase XerD [Mycobacterium sp. MCS] gi|119869018|ref|YP_938970.1| site-specific tyrosine recombinase XerD [Mycobacterium sp. KMS] gi|108770327|gb|ABG09049.1| tyrosine recombinase XerD subunit [Mycobacterium sp. MCS] gi|119695107|gb|ABL92180.1| tyrosine recombinase XerD subunit [Mycobacterium sp. KMS] Length = 318 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 46/298 (15%), Positives = 98/298 (32%), Gaps = 37/298 (12%) Query: 63 SPRKKPTT-LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTK 117 +P + L + Y +A N+ S+ + G D K+T Sbjct: 2 APSAVRRSALDDQLQGYLDHLTIERGVAANTLSSYRRDLRRYSEHLTGRGVEDLAKVTES 61 Query: 118 HIRSGVESRKH----------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167 + + + + + SA + L ++R L ++A + ++ +V+ P Sbjct: 62 DVSDFLVALRRGDPDTGAQALSAVSAARALIAVRGLHRFATAEGLTDVDVARAVKPPTPG 121 Query: 168 TEGIRPWTKEDM--------QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219 + + +++ ++ + R E L +G R S++ + + Sbjct: 122 RRLPKSLSIDEVLALLDGAGGDSEADGPLTLRNRALLELLYSTGARISEAVGLDIDDVDT 181 Query: 220 NIFSIK-TQKTGTIITVELPDGFMKLLAMTPIGKETF-----------FINNDKQKMNAT 267 + S+ K G V + + L + F+N +++ Sbjct: 182 HARSVLLRGKGGKQRLVPIGRPAVSALDAYLVRGRPDLARRGRGTPAIFLNARGGRLSRQ 241 Query: 268 QFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + A +AG+ S H +R AT D GA + G +V + YT Sbjct: 242 SAWQVLQDAAERAGITSAVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYT 299 >gi|239833075|ref|ZP_04681404.1| tyrosine recombinase XerD [Ochrobactrum intermedium LMG 3301] gi|239825342|gb|EEQ96910.1| tyrosine recombinase XerD [Ochrobactrum intermedium LMG 3301] Length = 313 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 43/293 (14%), Positives = 93/293 (31%), Gaps = 37/293 (12%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR---K 127 I + + A N+ S+ + + + + H+RS +++ Sbjct: 8 AIENFLEMMSAERGAARNTLESYRRDLEAVAEAMAARGVNLAEAGADHVRSAIDAMAAEG 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +S + L+++R F++ + Y +P +V+ PK++ + + E++ + Sbjct: 68 FAATSQARRLSALRQFFRFLYSEGYRQDDPTGTVDAPKKQKPLPKIMSVENVTRLLDRAV 127 Query: 188 EGSQP-----------------RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKT 229 + E L +GLR S+ V + + + K Sbjct: 128 LEADEPGGPADLTSDRLRALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKG 187 Query: 230 GTIITVELPDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATK 279 V L + L F ++ + F+ K A + Sbjct: 188 SKERMVPLSPKAREALQRFLALRDSLPGSDDNPWLFPAFSESGHLARQVFARELKGLAAR 247 Query: 280 AGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AG++ S H +R A+ GA + G + + YT + Sbjct: 248 AGLSASAVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEER 300 >gi|239627800|ref|ZP_04670831.1| phage integrase [Clostridiales bacterium 1_7_47_FAA] gi|239517946|gb|EEQ57812.1| phage integrase [Clostridiales bacterium 1_7_47FAA] Length = 331 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 43/267 (16%), Positives = 88/267 (32%), Gaps = 13/267 (4%) Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE---- 124 + L + + + +V++ ++ + ++ G ++I + + + Sbjct: 51 ISFPEL-DIFIGKIRFENYSVSTVNQYQRFLTDLLIYVG-KPVQEIAGEDVVECLNYYEQ 108 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 +RK + S+ F + + Y++ NP +V+ K E T ++++ + Sbjct: 109 ARKISSSTKDHKRRIASSFFTFLHERGYISKNPMSTVDPIKYVAEIREALTSREVEKLRI 168 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243 + E L SG R S+ V+ + K V D M+ Sbjct: 169 ACGTNIRDNAVLELFLASGCRVSEVVSMRVEDMDLQAGCGKVLGKGKKERMVFFNDRAME 228 Query: 244 LLAMTPIGKE----TFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATIS 297 L + Q + + A KAG+ K H +R AT + Sbjct: 229 YLERYLGDRRSGAVILSKRAPYQGLKKNALENIIRKIAKKAGLGKRVFPHLLRHTFATRA 288 Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324 + G L G +V+ Y K Sbjct: 289 LNKGMPLPTLCDLMGHSSVETTRIYAK 315 >gi|170754911|ref|YP_001781341.1| site-specific tyrosine recombinase XerC [Clostridium botulinum B1 str. Okra] gi|169120123|gb|ACA43959.1| site-specific recombinase, phage integrase family [Clostridium botulinum B1 str. Okra] Length = 326 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 50/299 (16%), Positives = 109/299 (36%), Gaps = 46/299 (15%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRK-------------SGDFDYRKITTKHIRSG-- 122 Y ++ + N+ S++ R D + + I+ + I++ Sbjct: 23 YLRTI--KGKSENTIESYKLDLIMFFRFLKLYKGMVPGEAEFNDIEIKDISDEDIKNISL 80 Query: 123 ----------VESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGI 171 R + + + + +++ F++ + + + NP L +E PK Sbjct: 81 TDLFAFVSFVENYRNNGSYAKARKVATLKSFFRFLQGKVKIIKENPALELESPKISKRNP 140 Query: 172 RPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229 T ++ ++ S + R L GLR S+ C + +++N+I ++ + Sbjct: 141 VYLTLDESKRLLSSIDGKFKERDLCIVTMFLNCGLRLSELCGINISNIKNDILTVVGKGN 200 Query: 230 GTIITVELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATK 279 TV L +K L ++ F++ + ++N + K K Sbjct: 201 -KERTVYLNKACIKTLNDYLSVRKEMGEKIVDKDALFLSKNYTRINKRSVEMLVKKYVKK 259 Query: 280 AGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKG-ADRIRLGI 333 AG++ S H +R +AT+ G L G + + + YT +DR+R + Sbjct: 260 AGLDGEKYSPHKLRHTAATLMYKHGGVDIRSLQMILGHENISTTQIYTHVDSDRLREAV 318 >gi|153940640|ref|YP_001391047.1| site-specific tyrosine recombinase XerC [Clostridium botulinum F str. Langeland] gi|152936536|gb|ABS42034.1| site-specific recombinase, phage integrase family [Clostridium botulinum F str. Langeland] gi|322806030|emb|CBZ03597.1| putative integrase/recombinase [Clostridium botulinum H04402 065] Length = 326 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 50/299 (16%), Positives = 109/299 (36%), Gaps = 46/299 (15%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRK-------------SGDFDYRKITTKHIRSG-- 122 Y ++ + N+ S++ R D + + I+ + I++ Sbjct: 23 YLRTI--KGKSENTIESYKLDLIMFFRFLKLYKGMVPGETEFNDIEIKDISDEDIKNISL 80 Query: 123 ----------VESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGI 171 R + + + + +++ F++ + + + NP L +E PK Sbjct: 81 TDLFAFVSFVENYRNNGSYAKARKVATLKSFFRFLQGKVKIIKENPALELESPKISKRNP 140 Query: 172 RPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229 T ++ ++ S + R L GLR S+ C + +++N+I ++ + Sbjct: 141 VYLTLDESKRLLSSIDGKFKERDLCIVTMFLNCGLRLSELCGINISNIKNDILTVVGKGN 200 Query: 230 GTIITVELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATK 279 TV L +K L ++ F++ + ++N + K K Sbjct: 201 -KERTVYLNKACIKTLNDYLSVRKEMGEKIVDKDALFLSKNYTRINKRSVEMLVKKYVKK 259 Query: 280 AGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKG-ADRIRLGI 333 AG++ S H +R +AT+ G L G + + + YT +DR+R + Sbjct: 260 AGLDGEKYSPHKLRHTAATLMYKHGGVDIRSLQMILGHENISTTQIYTHVDSDRLREAV 318 >gi|153835738|ref|ZP_01988405.1| tyrosine recombinase XerC [Vibrio harveyi HY01] gi|148867607|gb|EDL66909.1| tyrosine recombinase XerC [Vibrio harveyi HY01] Length = 313 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 40/301 (13%), Positives = 101/301 (33%), Gaps = 22/301 (7%) Query: 68 PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRS-- 121 P +L+ + + + L+++++ +++ + + + G D+ ++ +R Sbjct: 10 PNSLQKPLERFYEFLRSEKGLSLHTQRNYKQQLETMAHHLAEMGLKDWSQVDAGWVRQLA 69 Query: 122 -GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 SS L+S+R F + + + ++ NP V P++K + +++ Sbjct: 70 GKGMREGMKASSLATRLSSLRSFFDFLILRGEMSANPAKGVSAPRKKRPLPKNLDVDEVN 129 Query: 181 QFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236 Q + + R E + +GLR ++ V+ +Q ++ V Sbjct: 130 QLLEVNEDDPLAVRDRAMMELMYGAGLRLAELVSVDVRDVQLRSGELRVIGKGDKERKVP 189 Query: 237 LPDGFMKLLAMTPIGK--------ETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 + + + F++ +++ K V + S Sbjct: 190 FSGMATEWVGKWLRVRGDLAAPGEPALFVSKLGTRISHRSVQKRMAEWGQKQSVASHISP 249 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346 H +R AT ++ + G + + + YT D L + + Sbjct: 250 HKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTH-LDFQHLAQAYDQAHPRARKRN 308 Query: 347 D 347 D Sbjct: 309 D 309 >gi|269215886|ref|ZP_06159740.1| tyrosine recombinase XerD [Slackia exigua ATCC 700122] gi|269130836|gb|EEZ61912.1| tyrosine recombinase XerD [Slackia exigua ATCC 700122] Length = 315 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 37/284 (13%), Positives = 82/284 (28%), Gaps = 24/284 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTPSSAI---QFLT 138 + + S+ + + + G R +T + S V +A + ++ Sbjct: 32 KGSSDLTVRSYAADLEDYVAFLDSEGVHAARDVTRDALASYVADLSGRGYAAASIERHVS 91 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRL 194 +++ + VR VA +P ++ P + + + G + Sbjct: 92 ALKGFHAFLVRDGLVASDPACALPLPGVPARLPDVLSIDQVNTLLDQEFREGPLGVRNAC 151 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-----------ITVELPDGFMK 243 A E L GLR S+ + ++ G+ + + Sbjct: 152 ALELLYGCGLRASELSGLDAGDAFLDEGILRIVGKGSRERIVPIGGSAARCLASYLEDAR 211 Query: 244 -LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAG 301 LL +N +++ + G+ + H +R AT + G Sbjct: 212 PLLRSPRRLTPAVMLNARGGRLSRQSIHSIVREAGHVIGIKDLHPHTLRHSFATHLLEGG 271 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345 A + G + + YT DR + + + Sbjct: 272 ADLRAIQEMLGHSDISTTQIYTH-VDRTHVREEYLSAHPRAKAA 314 >gi|89895297|ref|YP_518784.1| hypothetical protein DSY2551 [Desulfitobacterium hafniense Y51] gi|89334745|dbj|BAE84340.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 298 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 41/280 (14%), Positives = 93/280 (33%), Gaps = 22/280 (7%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK----SGDFD----YRKITTKHIRSGV 123 +S + + + ++ +++ Q G+ ++ +RS + Sbjct: 4 DHALSLFDGHLKTQNRSQHTLMAYHKDLIQFFEFAARELGEEPEKVTVDQVDIYIVRSFL 63 Query: 124 ESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT----K 176 S + L+++R FK+ R+ + NP + PK + + Sbjct: 64 GEMTERGLERKSMARKLSALRAFFKFLCREGILQKNPIQRIATPKLGRKLPHFLSLEELD 123 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-----TQKTGT 231 ++ G++ ++ E L SGLR S+ + + ++ ++ Sbjct: 124 RLIRTPDCATLLGARDQVILELLYGSGLRVSELADLNCRDIDEGTSLLRVRGKGNKERIV 183 Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289 +T + + L M +E +N +++ A +AG+ + H + Sbjct: 184 PLTHYALEAARQYLEMREDKQEALLLNYQGTRLSVRSIRRILDGLALEAGLSQHLHPHML 243 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT D GA + G + + YT Sbjct: 244 RHSFATHLLDGGADLRSVQELLGHAKLSSTQIYTHLTKER 283 >gi|325971099|ref|YP_004247290.1| tyrosine recombinase xerC [Spirochaeta sp. Buddy] gi|324026337|gb|ADY13096.1| Tyrosine recombinase xerC [Spirochaeta sp. Buddy] Length = 297 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 40/278 (14%), Positives = 88/278 (31%), Gaps = 20/278 (7%) Query: 74 LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDY------RKITTKHIRSGVESR 126 LI+ + + SL+ ++ ++E Q+ R+ +R V+ Sbjct: 6 LIATFLTTQKSIRSLSEHTLCAYERDLLQLQSYFTSLQVPLLEASREDARMFVRYLVKDS 65 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK--- 183 + SS + ++ R + ++ E +A NP + ++ T E++ Sbjct: 66 SYAQSSINRKISCARSFYSSLLKAERIASNPFSLIAVHRQMDRLPSVLTVEEVTALLSLP 125 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 ++ F L +G R S+ ++ ++ G Sbjct: 126 YADFPSTRDMTVFTLLYDTGCRISELLSIKESDIEWETKRVRVLGKGNKSRYVFFTDHCA 185 Query: 244 LLAMTPIGKETFFINNDKQKMNATQ-------FSIWFKAKATKAGV--NKSAHGVRKFSA 294 L + + + +N + F ++ G + H +R A Sbjct: 186 SLLSSYLSLKHERFSNPLLICSNKGKQLPMSTVGSMFAVYRSRLGWQKPFTPHVLRHTYA 245 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 T D GA + G +++ + YT + RL Sbjct: 246 THLLDNGADIRLVQELLGHQSISTTQIYTH-VSKERLA 282 >gi|254258575|ref|ZP_04949629.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1710a] gi|254217264|gb|EET06648.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1710a] Length = 333 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 47/322 (14%), Positives = 91/322 (28%), Gaps = 35/322 (10%) Query: 44 IPAYMSALTGSTPKREYINSPRKKPTTLKWLIS--EYRKSAHW-----------GSLAVN 90 A + + + + L + + S L+ N Sbjct: 2 ARAVHACAADTAGGDAGRAPAQPADRPVDALAASPAWLDSRASIDLFCDAMWLEHGLSRN 61 Query: 91 SRISFESYFDQIIRKSGDFDYRKIT----TKHIRSGVESRKHTPSSAIQFLTSMRVLFKW 146 + ++ + + +S+ + L+ R + W Sbjct: 62 TLDAYRRDLQLFAQWLAARHVASVDHASEPTLTEYIAARSDGKATSSNRRLSVFRRYYGW 121 Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYS 202 AVR+ A++P L + K+ ++ ++ + + + R E + S Sbjct: 122 AVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALLAAPDVDTPLGLRDRTMLELMYAS 181 Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETF------ 255 GLR S+ + N ++ V + + Sbjct: 182 GLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVPFGEVAHGWIERYLRDARPALLGARA 241 Query: 256 ----FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMA 309 F+ M QF K A +A V + S H +R AT + GA + Sbjct: 242 ADALFVTARGDGMTRQQFWNIIKRHAQQADVRVHLSPHTLRHAFATHLLNHGADLRVVQL 301 Query: 310 TYGWKTVDQAETYTKGADRIRL 331 G + + YT A R RL Sbjct: 302 LLGHSDISTTQIYTHVA-RERL 322 >gi|189499779|ref|YP_001959249.1| tyrosine recombinase XerD [Chlorobium phaeobacteroides BS1] gi|189495220|gb|ACE03768.1| tyrosine recombinase XerD [Chlorobium phaeobacteroides BS1] Length = 305 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 31/277 (11%), Positives = 90/277 (32%), Gaps = 26/277 (9%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQ--IIRKSGDFDYRKITTKHIRSGVESRKHTP 130 L+ + + + ++ S+ + ++ + + + + + I+ ++ Sbjct: 12 LLDSFLNYLTLERNFSSHTITSYANDLNRYLLFMQHSEKQIKAVVLTDIQHFIQELHEAG 71 Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S + ++++R K+ +R+ + N S+ +PK + +++ + Sbjct: 72 LESRSISRNISAIRSFHKFLIRENILEENAAKSLHQPKPGLHLPTVLSVDEVFRLLDAPL 131 Query: 188 EG-------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPD 239 + ++ E L +G+R S+ + + + V + Sbjct: 132 LEKPPGKYFLRDKVLLELLYATGVRVSELINIQQSNCYLDAGFARIFGKGSKERLVPVGH 191 Query: 240 GFMKLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAGVNK--SAH 287 ++ + N + + + ++ AG+ K S H Sbjct: 192 TAIEWIRRYQQELRLNMANRESGDYLFLNARGKQLSRMSAWNIVRRLSSVAGLTKKISPH 251 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT + GA + G ++ + YT Sbjct: 252 TLRHTFATHLLEGGADLRAVQEMLGHSSIIATQIYTH 288 >gi|295133148|ref|YP_003583824.1| tyrosine type site-specific recombinase [Zunongwangia profunda SM-A87] gi|294981163|gb|ADF51628.1| tyrosine type site-specific recombinase [Zunongwangia profunda SM-A87] Length = 375 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 47/258 (18%), Positives = 92/258 (35%), Gaps = 9/258 (3%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ 135 Y +V++ ++ ++F++ I D + IR ++S S Sbjct: 108 ENYLLKLELKRYSVSTIKTYVTFFEKFINHYSQRDIDSLDECEIRLFLQSLIQENKSNSY 167 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195 ++ + K+ N +ERP+R+ + ++E++ + + R Sbjct: 168 INQAINAI-KFNYEVVCGMPNRFYDMERPRREHRLPQVISREEIFAIIENTN-NIKHRCI 225 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPDGFMKLLAMTPIGKE 253 E L SGLR S+ +Q + + IK + K L + + L + Sbjct: 226 VELLYSSGLRRSELLNLKLQDIDSKRMLIKIKAGKGNKDRFTILSEKCLAHLRQYYRKWK 285 Query: 254 TFFINNDKQK---MNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELM 308 + Q + K ++KA +NK S H +R AT ++G ++ Sbjct: 286 PEIYLFEGQPGKQYSGASVLKVVKNASSKAKLNKNISPHILRHSFATHLLESGVDLRKIQ 345 Query: 309 ATYGWKTVDQAETYTKGA 326 G + E YT A Sbjct: 346 VLLGHGSTKTTEIYTHVA 363 >gi|198284552|ref|YP_002220873.1| tyrosine recombinase XerD [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667700|ref|YP_002427220.1| tyrosine recombinase XerD [Acidithiobacillus ferrooxidans ATCC 23270] gi|198249073|gb|ACH84666.1| tyrosine recombinase XerD [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519913|gb|ACK80499.1| tyrosine recombinase XerD [Acidithiobacillus ferrooxidans ATCC 23270] Length = 302 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 41/297 (13%), Positives = 95/297 (31%), Gaps = 28/297 (9%) Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT---- 116 +++ R++ T + + + +L N+ ++ Q+ ++D T Sbjct: 6 LSAERQRIDTFLDAL--WLE----KNLGENTLTAYRQDLLQVAAALAEWDLTLTTADDGA 59 Query: 117 -KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 I S ++ L+S+R + +A R+ +V+ +P +++ P+ + Sbjct: 60 LARILGQRLQSGAALRSVVRLLSSVRRFYGYAEREGWVSRDPSRNLQSPRIGRVLPHVLS 119 Query: 176 KEDMQQFK----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 + +++ G + E + GLR S+ + + + + G Sbjct: 120 ETEIEALLAAPDCTHPLGLRDAAMLELMYACGLRVSELVNLETRQVDLSADMVVVFGKGR 179 Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQ-----------KMNATQFSIWFKAKATKA 280 + + I + M +F + A A Sbjct: 180 KERLVPMGEVAAGRVTQYLQMGRPQILGQRISAALFVTGRGAAMTRQRFWQNIERYARSA 239 Query: 281 GVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 G+ ++ H +R AT + GA + G + E YT A + Sbjct: 240 GITQTVSPHSLRHAFATHLLNHGADLRSVQLMLGHAALSTTEIYTHVAQARLKALHA 296 >gi|260549307|ref|ZP_05823527.1| site-specific tyrosine recombinase [Acinetobacter sp. RUH2624] gi|260407713|gb|EEX01186.1| site-specific tyrosine recombinase [Acinetobacter sp. RUH2624] Length = 308 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 43/279 (15%), Positives = 90/279 (32%), Gaps = 27/279 (9%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESR---- 126 L+S + K + + ++ ++E + + + +R + R Sbjct: 10 QLLSMWLKERKIQNQSEHTITAYERDVKSFLEFCDSKKINLKNVEASDLREYLAQRVEQD 69 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + + SS + LTS+R KWA + +Y+ INP + ++ E + Q Sbjct: 70 QLSASSMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILDQP 129 Query: 187 SEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVEL 237 + + E L SGLR ++ ++ + N ++ V Sbjct: 130 MPEKPIDQQLWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRHLVRITGKGNKTRIVPF 189 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAGV--NKS 285 + L + + + D+ Q K +A +AGV + Sbjct: 190 GKKAKESLLNWLKVYKIWKGHFDQNAFVFISQHGGVLTPRQIEKRVKLQAQRAGVNVDLH 249 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R A+ + + G + + YT Sbjct: 250 PHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTH 288 >gi|308388941|gb|ADO31261.1| putative integrase/recombinase [Neisseria meningitidis alpha710] Length = 291 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 43/273 (15%), Positives = 93/273 (34%), Gaps = 19/273 (6%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTP 130 LI ++ L+ N+ + ++I R+ + + + V Sbjct: 5 LIDRLLETLWLDRRLSQNTLNGYRRDLEKIARRLSQSGRMLKDADEADLAAAVYVDGEQR 64 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---- 186 SS + L++ + L+ W R+ NP ++ PK T++ + + + Sbjct: 65 SSQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLLATPDTDT 124 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL 245 G + + E + +GLR S++ ++ + I K V + + Sbjct: 125 PHGLRDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITALGKGDKQRMVPMGQESAYWV 184 Query: 246 AMTPIG----------KETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294 + F++ K ++ + K A +AG+ + S H +R A Sbjct: 185 GRYYTEARPALLKGRSCDALFVSQKKTGISRQLAWMIVKEYAGRAGIGHISPHSLRHAFA 244 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGAD 327 T G + G ++ + YT A+ Sbjct: 245 THLVQHGLDLRVVQDMLGHADLNTTQIYTHVAN 277 >gi|237809853|ref|YP_002894293.1| tyrosine recombinase XerC [Tolumonas auensis DSM 9187] gi|237502114|gb|ACQ94707.1| tyrosine recombinase XerC [Tolumonas auensis DSM 9187] Length = 309 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 38/287 (13%), Positives = 95/287 (33%), Gaps = 24/287 (8%) Query: 70 TLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRK-------ITTKHIRS 121 +L ++ Y + L+ ++ +++ + +I + + + + + Sbjct: 4 SLSSVLHTYLEYLRVERQLSAHTLSNYQRHLQALIEWLQEKQIQDWGELNNPLVRQWAHT 63 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + + +P + ++++R W V + +A NP V PK + + + Q Sbjct: 64 LRKHKDTSPRTISTKMSALRSFADWLVIRGILAANPARGVALPKLGRPLPKNLDVDQVHQ 123 Query: 182 FKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236 + E + R E +G+R S+ + L ++ + Sbjct: 124 LLNITDESDPLVVRDRAIMELFYSTGMRLSELVALDLNDLDMTSRQVRVIGKGNKERILP 183 Query: 237 LPDGFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATK--AGVNKSA 286 + ++ L + F F+++ K+++ A I + K + Sbjct: 184 VGRLALEWLEKWLRTRTAFLLEGETALFLSSRKRRITARMVEIRIEQWGQKQTLNSHVHP 243 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 H +R AT ++ + G + + YT D L Sbjct: 244 HKLRHSFATHMLESSGDLRAVQELLGHANLATTQIYTH-LDFQHLAA 289 >gi|107024018|ref|YP_622345.1| site-specific tyrosine recombinase XerC [Burkholderia cenocepacia AU 1054] gi|116691105|ref|YP_836728.1| site-specific tyrosine recombinase XerC [Burkholderia cenocepacia HI2424] gi|105894207|gb|ABF77372.1| Tyrosine recombinase XerC [Burkholderia cenocepacia AU 1054] gi|116649194|gb|ABK09835.1| tyrosine recombinase XerC [Burkholderia cenocepacia HI2424] Length = 306 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 43/288 (14%), Positives = 91/288 (31%), Gaps = 31/288 (10%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS---GVESRKHTP 130 I+ Y + L+ ++ ++ D++ + + +T +R + + Sbjct: 6 IAAYLSNLKHVRQLSEHTLRAYTHELDELKKLAAGRPLEALTAADMRGAVVRGHAAGLSA 65 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 S L++ R ++W ++ + NP V PKR+ + + +D G+ Sbjct: 66 RSISHRLSAWRAFYRWFAQRVEMPANPVAGVRAPKREKSLPKALSVDDAVALMDAPLAGT 125 Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------GTIIT 234 + E SGLR ++ V++ Q + + Sbjct: 126 TESIRDHAILELFYSSGLRLAELVGLDVRYTQADGYRSAGWLDLAEAEVTVRGKGNKERK 185 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKAGVN--K 284 V + + L ++ F ++ +M+ K A AG+ Sbjct: 186 VPVGSKAIDALNAWLAVRDEFVKHDPHPLFVSVRGNRMSPGVVRERVKRAALAAGIPANV 245 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R AT + + G +V + YT D L Sbjct: 246 HPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQIYT-SLDFQHLA 292 >gi|116328183|ref|YP_797903.1| tyrosine site-specific recombinase XerC [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116330907|ref|YP_800625.1| tyrosine site-specific recombinase XerC [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116120927|gb|ABJ78970.1| Tyrosine site-specific recombinase XerC [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124596|gb|ABJ75867.1| Tyrosine site-specific recombinase XerC [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 311 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 48/296 (16%), Positives = 93/296 (31%), Gaps = 28/296 (9%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRK 127 L ++ + + N+ ++ D ++ IRS Sbjct: 16 LNETAEKFINYLKIEKNYSQNTINAYSIDLKFFFEFCEKEQLDILQVEPVDIRSYFSYLA 75 Query: 128 HT----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 S + L+S+R +K +R + + NP + PK + E + + + ++ Sbjct: 76 KEQDLDRRSQSRKLSSLRTFYKVLLRDDQIESNPATRISFPKVRKEVPKNFRINETEEIL 135 Query: 184 SFWSEGS------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVE 236 F +E + + + E L SGLR + A + L ++ K V Sbjct: 136 EFEAERTSEILEIRDKAMIEVLYSSGLRVFELVNAKLGSLSKDLTVLKVLGKGQKERFVY 195 Query: 237 LPDGFMKLLAMTPIGKETFFI-------NNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287 + L + F N +K+ + K G K + H Sbjct: 196 FGKEAVDSLRRYLEYRNVSFPDVKEIFLNQKGKKLTTRGVRYILNERRKKMGWEKKITPH 255 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI-----RLGIKNSRR 338 R AT DAGA + G ++ + Y + R ++R+ Sbjct: 256 KFRHTFATDLLDAGADIRAVQELLGHSSLSTTQIYLSVSKEKIKEVYRKAHPHARK 311 >gi|314950814|ref|ZP_07853885.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0133A] gi|313596990|gb|EFR75835.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0133A] Length = 371 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 37/343 (10%), Positives = 95/343 (27%), Gaps = 41/343 (11%) Query: 29 HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA 88 G R ++ T A + + E T +K + + + +L Sbjct: 15 DGSRKKVEKVGGDTRPEAEAALRKVLSDIDETGQYFLGTDTRVKQYLDFWMEEYVKLNLK 74 Query: 89 VNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF---LTSMRVLF 144 N+ ++ I G ++ +++ + + S + ++ Sbjct: 75 YNTYENYRFTIKNHINGYLGKKKLTDLSPALLQNFINAEFKKGYSKKTMTITHSVLKNAL 134 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGI------RPWTKEDMQQFKSFWSEGSQPRLAFEF 198 AV + + + + + + ED EG + Sbjct: 135 NMAVYPWGLIKQNPMLYVKIPKYEARPTTKKDLKIISLEDFDHMLEITPEGHPFYIPLNI 194 Query: 199 LLYSGLRCSDSCRAGVQHLQNN----------------IFSIKTQKTGTIITVELPDGFM 242 Y+G+R + C + + + + + T+ + + Sbjct: 195 GFYTGMRVGEVCGLTWDDVDFSNGTITVEKQMVKNDGAWVYGTPKTSSSNRTIFIGQTLL 254 Query: 243 KLLAMTPIGKETFFINNDKQKM--------------NATQFSIWFKAKATKAGVNKSAHG 288 +L + + K + + + + ++ + H Sbjct: 255 AILKKHKKQQLENRMKYGKLYIDSNAVCTKEDGELVTPSVVKWNTRRISNALSLSFNFHS 314 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330 +R AT+ + GA E+ G + TY+ D++R Sbjct: 315 LRHTHATLLLENGAKMKEISERLGHSRISITMDTYSHVTDKMR 357 >gi|304384441|ref|ZP_07366845.1| tyrosine recombinase XerC [Prevotella marshii DSM 16973] gi|304334461|gb|EFM00750.1| tyrosine recombinase XerC [Prevotella marshii DSM 16973] Length = 301 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 37/275 (13%), Positives = 90/275 (32%), Gaps = 24/275 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG----DFDYRKITTKHIRSGVESRKHT 129 + ++ + + + S++ + D + + IR +ES Sbjct: 9 VDQFLSYLQYEKRYSPRTVQSYDEDLKEFEAYIKVQGNDLSWHSVDADVIRGWMESMMDK 68 Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-----WTKEDMQQ 181 ++ + L+++R +++++ + V+ +P +V PK++ + + + Sbjct: 69 GNVATTINRRLSALRSFYRFSLSRNLVSHDPAHAVVGPKKEKPLPQFVKETEMDELFDKN 128 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KTGTIITVELPDG 240 + + R SG+R S+ V + ++ K + + Sbjct: 129 RWGDTFKDVRARTILLTFYSSGIRVSELTGLHVSDIDFASSELRVTGKRNKQRVIPFGEE 188 Query: 241 FMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGVR 290 + L + FI + M +Q K + +S H +R Sbjct: 189 LAEQLVRYLAIREVTAGYDTDALFITEKGRPMTMSQVQYEVKKYLGRVCTLKKRSPHVLR 248 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 AT + GA + G +++ E YT Sbjct: 249 HTFATAMLNHGAGLESVKKLLGHESLSTTEIYTHT 283 >gi|170761083|ref|YP_001787113.1| site-specific tyrosine recombinase XerC [Clostridium botulinum A3 str. Loch Maree] gi|169408072|gb|ACA56483.1| site-specific recombinase, phage integrase family [Clostridium botulinum A3 str. Loch Maree] Length = 326 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 50/299 (16%), Positives = 109/299 (36%), Gaps = 46/299 (15%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRK-------------SGDFDYRKITTKHIRSG-- 122 Y ++ + N+ S++ R D + + I+ + I++ Sbjct: 23 YLRTI--KGKSENTIESYKLDLIMFFRFLKLYKGMVPGETEFNDIEIKDISDEDIKNISL 80 Query: 123 ----------VESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGI 171 R + + + + +++ F++ + + + NP L +E PK Sbjct: 81 TDLFAFVSFVENYRNNGSYAKARKVATLKSFFRFLQGKVKIIKENPALELESPKISKRNP 140 Query: 172 RPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229 T ++ ++ S + R L GLR S+ C + +++N+I ++ + Sbjct: 141 VYLTLDESKRLLSSIDGKFKERDLCIVTMFLNCGLRLSELCGINISNIKNDILTVVGKGN 200 Query: 230 GTIITVELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATK 279 TV L +K L ++ F++ + ++N + K K Sbjct: 201 -KERTVYLNKACIKTLNDYLSARKEMGEKIVDKDALFLSKNYTRINKRSVEMLVKKYVKK 259 Query: 280 AGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKG-ADRIRLGI 333 AG++ S H +R +AT+ G L G + + + YT +DR+R + Sbjct: 260 AGLDGEKYSPHKLRHTAATLMYKHGGVDIRSLQMILGHENISTTQIYTHVDSDRLREAV 318 >gi|69246683|ref|ZP_00604073.1| Phage integrase [Enterococcus faecium DO] gi|68195157|gb|EAN09615.1| Phage integrase [Enterococcus faecium DO] Length = 375 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 37/343 (10%), Positives = 95/343 (27%), Gaps = 41/343 (11%) Query: 29 HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA 88 G R ++ T A + + E T +K + + + +L Sbjct: 19 DGSRKKVEKVGGDTRPEAEAALRKVLSDIDETGQYFLGTDTRVKQYLDFWMEEYVKLNLK 78 Query: 89 VNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF---LTSMRVLF 144 N+ ++ I G ++ +++ + + S + ++ Sbjct: 79 YNTYENYRFTIKNHINGYLGKKKLTDLSPALLQNFINAEFKKGYSKKTMTITHSVLKNAL 138 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGI------RPWTKEDMQQFKSFWSEGSQPRLAFEF 198 AV + + + + + + ED EG + Sbjct: 139 NMAVYPWGLIKQNPMLYVKIPKYEARPTTKKDLKIISLEDFDHMLEITPEGHPFYIPLNI 198 Query: 199 LLYSGLRCSDSCRAGVQHLQNN----------------IFSIKTQKTGTIITVELPDGFM 242 Y+G+R + C + + + + + T+ + + Sbjct: 199 GFYTGMRVGEVCGLTWDDVDFSNGTITVEKQMVKNDGAWVYGTPKTSSSNRTIFIGQTLL 258 Query: 243 KLLAMTPIGKETFFINNDKQKM--------------NATQFSIWFKAKATKAGVNKSAHG 288 +L + + K + + + + ++ + H Sbjct: 259 AILKKHKKQQLENRMKYGKLYIDSNAVCTKEDGELVTPSVVKWNTRRISNALSLSFNFHS 318 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330 +R AT+ + GA E+ G + TY+ D++R Sbjct: 319 LRHTHATLLLENGAKMKEISERLGHSRISITMDTYSHVTDKMR 361 >gi|329117413|ref|ZP_08246130.1| site-specific recombinase, phage integrase family [Streptococcus parauberis NCFD 2020] gi|326907818|gb|EGE54732.1| site-specific recombinase, phage integrase family [Streptococcus parauberis NCFD 2020] Length = 362 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 52/345 (15%), Positives = 105/345 (30%), Gaps = 33/345 (9%) Query: 11 VTKERTRHGKIIY----YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 + + +GK Y Y G++ + T A S + E Sbjct: 3 IESYKKSNGKTYYKFLLYIGIVDGKKKYIRRSGFETKAKAKASLINLQAELSEPQ----- 57 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 T L +++ K + + + I+ K + IT I+ E Sbjct: 58 TNMTFGKLTNQWLKEYEKTVQGSTYLKTERNINNHILPKLSNVKIGDITPLLIQQLTEQW 117 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-----WTKEDMQQ 181 + + L +R + A+R Y+ NP L + PK K E + + + Sbjct: 118 CYDLKYGAKILGIVRNILNLAIRYGYLNSNPALPITPPKIKRERKKNNNFYSLDELKIFL 177 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--------------FSIKTQ 227 ++ + F L ++G+R + L NN T+ Sbjct: 178 KLVDETDDIEKIALFRLLAFTGIRKGELLALTWDDLNNNTLTINKAVTRTFTGLEIDVTK 237 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ---KMNATQFSIWFKAKATKAGVN- 283 + + L D +++L T + + M + W + + Sbjct: 238 TKSSDRLISLDDETVEILNELHETFPTSTLMFQSESGGIMTPSLPRKWLLQLTSDTKLPP 297 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGAD 327 + HG R A++ ++G + ++ G + YT Sbjct: 298 ITIHGFRHTHASLLFESGLSLKQVQHRLGHGDLQTTMNVYTHITQ 342 >gi|269214488|ref|ZP_05986672.2| tyrosine recombinase XerC [Neisseria lactamica ATCC 23970] gi|269209617|gb|EEZ76072.1| tyrosine recombinase XerC [Neisseria lactamica ATCC 23970] Length = 334 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 39/293 (13%), Positives = 87/293 (29%), Gaps = 30/293 (10%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGV 123 Y ++ + ++ ++ +++ + ++ + + + Sbjct: 35 FAAHFDAYLENIVREGKSEHTVAAYRRDLEELFALLAQMPSEAEGGVPQDLSRRDFTAAL 94 Query: 124 ESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + + L+S R W V++ + +P + PK+ + +E + Sbjct: 95 RRLSQRGLNARTLARKLSSWRQYCAWLVKRGLMCADPTAGISPPKQPQRIPKALPQEWLN 154 Query: 181 QFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIIT 234 + +G + FE + SGLR S+ + + + T K Sbjct: 155 RMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQ 214 Query: 235 VELPDGFMKLLAMTPIGKETFFIN---NDKQKMNATQFSIWFKAKATKA-----GVNKSA 286 V L + L ++T + K A A G + S Sbjct: 215 VPLTGKSAEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAINGDGRHVSP 274 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 H +R A A + G ++ + YTK L + R+ Sbjct: 275 HMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK------LDFDHIARL 321 >gi|163736279|ref|ZP_02143698.1| phage integrase [Phaeobacter gallaeciensis BS107] gi|161390149|gb|EDQ14499.1| phage integrase [Phaeobacter gallaeciensis BS107] Length = 337 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 47/309 (15%), Positives = 99/309 (32%), Gaps = 42/309 (13%) Query: 73 WLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSG---VESR 126 I+ + + A N+ +++ + G + + T I S ++ Sbjct: 17 QWIATFLDAQAADLGAARNTLLAYGRDLKDVASWLGHKNRAFGSATRDDIESYLIACDAE 76 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 ++ + L++++ ++++A + + + NP + ++ P R+ + ++ + Sbjct: 77 GLARATRARRLSAIKQIYRFAFDEGWRSDNPAIQIKGPGRQKALPKTLEVIEVDRLLDAA 136 Query: 187 SEGSQPR-------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELP 238 + + E L +G+R S+ V + + + K G V L Sbjct: 137 RQSGRNLSDRLRNTCMMELLYATGMRVSELVGLPVAAARGDPRMLLVLGKGGKERMVPLS 196 Query: 239 DGFMKLLAMT----------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 LA + F + +F + K A G+ Sbjct: 197 PPARDALAAWLTTRDAAEEAAVAKGAAPSRFLFPSRGKSGHLTRHRFYLLIKEFAVAGGL 256 Query: 283 N---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 S H +R AT GA + A G + E YT D R+ Sbjct: 257 PPEAVSPHTLRHAFATHLLTNGADLRAIQALLGHADIATTEIYTHVLD---------ARL 307 Query: 340 SSVVDSDDP 348 S +V P Sbjct: 308 SELVLEHHP 316 >gi|255036556|ref|YP_003087177.1| tyrosine recombinase XerD [Dyadobacter fermentans DSM 18053] gi|254949312|gb|ACT94012.1| tyrosine recombinase XerD [Dyadobacter fermentans DSM 18053] Length = 298 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 49/280 (17%), Positives = 96/280 (34%), Gaps = 30/280 (10%) Query: 75 ISEYRKSAH-----WGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHI---RSG 122 Y K SL+ NS ++ +++ D ++ +H+ Sbjct: 2 WQSYIKHFKNYLRLERSLSGNSVEAYVRDVEKLEEYLELSKADLAPARVQEEHLSAFLKY 61 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + S + L+ ++ FK+ + + + +P +E P+ + + E+++ Sbjct: 62 IAELGLAAHSQARMLSGIKAFFKYLLLENEITEDPTELLESPRLPRKLPDVLSYEEIETM 121 Query: 183 K----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-----TQKTGTII 233 EG++ R E L SGLR S+ + + +I ++ + I Sbjct: 122 LSAIDHSTPEGTRNRAIMEVLYSSGLRVSELTDLQLTNCHFDIGFLRILGKGDKMRLVPI 181 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-------FSIWFKAKATKAGVNK-- 284 E L + D +N + K A KAG++K Sbjct: 182 GREAIKYTQIYLDHIRNDIAPQKGSEDIVFLNRRGGQLSRVMIFLMIKDTAEKAGIHKNV 241 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 S H R AT + GA+ + G +++ E YT Sbjct: 242 SPHTFRHSFATHLIEGGASLRAVQEMLGHESITTTEIYTH 281 >gi|317132367|ref|YP_004091681.1| integrase family protein [Ethanoligenens harbinense YUAN-3] gi|315470346|gb|ADU26950.1| integrase family protein [Ethanoligenens harbinense YUAN-3] Length = 334 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 49/301 (16%), Positives = 98/301 (32%), Gaps = 45/301 (14%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD---------------------YRKITT 116 Y ++ + + +E+ R IT Sbjct: 18 YMETI--KGKSPGTVREYENDLRTFFRFIKQMRGSVPRDTPFDEIAIDDVDIPFLASITL 75 Query: 117 KHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYV-AINPCLSVERPKRKTEGI 171 I RK+ +S + ++S+R +K+ + + NP +E PK+K Sbjct: 76 ADIYEYLNYITNERKNRAASRARKVSSLRSFYKYLCERAGILQENPTRDLEAPKQKKSLP 135 Query: 172 RPWTKEDMQQFKSFWS--EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229 + T E+ + ++ L G+R S+ + ++N+ + T K Sbjct: 136 KYLTLEESMEVLRDIDGKFAARDYCIMTLFLNCGMRLSELVGLNLSDIRNSTMT-VTGKG 194 Query: 230 GTIITVELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 T+ L + ++ L ++ F++N Q+++ +AG Sbjct: 195 NKQRTIYLNEACLQALERYLAVRAKDSVKDRDALFLSNRLQRISPKTVQAIVYKYLERAG 254 Query: 282 V---NKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 + S H +R +AT+ G L G + + E YT +DR Sbjct: 255 LSGRGLSVHKLRHTAATLLYQHGHVDVRVLQEILGHENLSTTEIYTHLSDRQ--LQDAVN 312 Query: 338 R 338 R Sbjct: 313 R 313 >gi|254669734|emb|CBA03915.1| site-specific recombinase [Neisseria meningitidis alpha153] Length = 291 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 43/273 (15%), Positives = 95/273 (34%), Gaps = 19/273 (6%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTP 130 LI ++ L+ N+ + ++I R+ + + + V Sbjct: 5 LIDRLLETLWLDRRLSQNTLNGYRRDLEKIARRLSQSGRMLKDADEADLAAAVYVDGEQR 64 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---- 186 SS + L++ + L+ W R+ NP ++ PK T++ + + + Sbjct: 65 SSQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLLATPDTDT 124 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-----------IKTQKTGTIITV 235 G + + E + +GLR S++ + + + + V Sbjct: 125 PHGLRDKALLELMYATGLRVSEAVGLNFGSVDLDRGCITALGKGDKQRMIPMGQESAYWV 184 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294 E + L + + F++ K ++ + K A++AG+ + S H +R A Sbjct: 185 ERYYTEARPLLLKGRNCDALFVSQKKTGISRQLAWMIVKEYASQAGIGHISPHSLRHAFA 244 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGAD 327 T G + G ++ + YT A+ Sbjct: 245 THLVRHGLDLRVVQDMLGHADLNTTQIYTHVAN 277 >gi|240080225|ref|ZP_04724768.1| XerD [Neisseria gonorrhoeae FA19] gi|240112438|ref|ZP_04726928.1| XerD [Neisseria gonorrhoeae MS11] gi|240115178|ref|ZP_04729240.1| XerD [Neisseria gonorrhoeae PID18] gi|254493240|ref|ZP_05106411.1| tyrosine recombinase xerD [Neisseria gonorrhoeae 1291] gi|260441004|ref|ZP_05794820.1| XerD [Neisseria gonorrhoeae DGI2] gi|268596375|ref|ZP_06130542.1| tyrosine recombinase xerD [Neisseria gonorrhoeae FA19] gi|268598504|ref|ZP_06132671.1| tyrosine recombinase xerD [Neisseria gonorrhoeae MS11] gi|268600856|ref|ZP_06135023.1| tyrosine recombinase xerD [Neisseria gonorrhoeae PID18] gi|291044335|ref|ZP_06570044.1| tyrosine recombinase xerD [Neisseria gonorrhoeae DGI2] gi|226512280|gb|EEH61625.1| tyrosine recombinase xerD [Neisseria gonorrhoeae 1291] gi|268550163|gb|EEZ45182.1| tyrosine recombinase xerD [Neisseria gonorrhoeae FA19] gi|268582635|gb|EEZ47311.1| tyrosine recombinase xerD [Neisseria gonorrhoeae MS11] gi|268584987|gb|EEZ49663.1| tyrosine recombinase xerD [Neisseria gonorrhoeae PID18] gi|291011229|gb|EFE03225.1| tyrosine recombinase xerD [Neisseria gonorrhoeae DGI2] Length = 291 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 44/275 (16%), Positives = 96/275 (34%), Gaps = 19/275 (6%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTP 130 LI ++ L+ N+ S+ ++I R+ + + + V Sbjct: 5 LIDRLLETLWLDRRLSRNTLDSYRRDLEKIARRLSLCGRTLKDADEADLAAAVYVDGEQR 64 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---- 186 S + L++ + L+ W R+ A NP ++ PK T++ + + + Sbjct: 65 GSQARALSACKRLYVWMEREGMRADNPTRLLKPPKIDRNIPTLITEQQISRLLAAPDTDT 124 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-----------IKTQKTGTIITV 235 G + + E + +GLR S++ ++ + + + V Sbjct: 125 PHGLRDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITTLGKGDKQRMVPMGQESAYWV 184 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294 E + L + + F++ K ++ + K A +AG+ + S H +R A Sbjct: 185 ERYYTEARPLLLKGRSCDALFVSQKKTGISRQLAWMIVKEYAGRAGIGHISPHSLRHAFA 244 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 T G + G ++ + YT A+ Sbjct: 245 THLVRHGLDLRVVQDMLGHADLNTTQIYTHVANVR 279 >gi|262373155|ref|ZP_06066434.1| tyrosine recombinase XerC [Acinetobacter junii SH205] gi|262313180|gb|EEY94265.1| tyrosine recombinase XerC [Acinetobacter junii SH205] Length = 311 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 47/304 (15%), Positives = 96/304 (31%), Gaps = 36/304 (11%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESR--- 126 + L+S + K + + ++ +++ I +R + +R Sbjct: 12 EKLLSMWLKERIIQNQSEHTIEAYQRDLTDFFNFCDSKSLALYDIEASDLREYLANRVEK 71 Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + + SS + LTS+R KWA + +Y+ NP + ++ E + Q Sbjct: 72 DQLSSSSLQRHLTSIRQFMKWAEQGQYLQQNPSEDFKLKRQPRPLPGMVDIETVHQILDQ 131 Query: 186 WSEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236 + + E L SGLR ++ ++ + N ++ V Sbjct: 132 APPDKPIEQQLWLRDKAILELLYSSGLRLAELQGLMIKDIDFNRQLLRITGKGNKTRIVP 191 Query: 237 LPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--NK 284 L + FI+ ++ Q K +A +AGV + Sbjct: 192 FGQKAKDSLIEWLKIYRIWQGEFNLDSAVFISQRGNRLTPRQIENRVKLQAQRAGVNVDL 251 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 H +R A+ A + G + + YT + +++ V D Sbjct: 252 HPHLLRHCFASHMLSASGDLRSVQEMLGHSNLSTTQIYTHV---------DFDQLARVYD 302 Query: 345 SDDP 348 P Sbjct: 303 QTHP 306 >gi|262198804|ref|YP_003270013.1| tyrosine recombinase XerD [Haliangium ochraceum DSM 14365] gi|262082151|gb|ACY18120.1| tyrosine recombinase XerD [Haliangium ochraceum DSM 14365] Length = 299 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 39/288 (13%), Positives = 86/288 (29%), Gaps = 23/288 (7%) Query: 66 KKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD---YRKITTKHIRS 121 + Y + +L+V++ + ++ R + + + Sbjct: 2 AAELDIDRACDLYFQHLKVERNLSVHTIEGYSRDLARLRRFLAERACIAVASVRPADLAD 61 Query: 122 GVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + + S + ++R F++ V + Y+ +P + P+ ++ + Sbjct: 62 YLLALADELGARSRARASAAIRGWFRFLVSERYLERDPAEHLATPRALRPLPVVIGEQAV 121 Query: 180 QQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 + + G + E L +GLR S+ + + + ++ G + Sbjct: 122 TELLAAPPTTTPRGLRDGAMIETLYATGLRVSELVGLLMADVHLDPGYLRVLGKGRKQRL 181 Query: 236 ELPDGFMKLLAMTP-----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV-N 283 + F+ + M F K A G+ Sbjct: 182 VPLGEMACARIEAYVSGARGSFLKNPKQPALFLTGHGKPMTRQGFWKLLKRYARGVGIAE 241 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 S H +R AT + GA + A G + + YT R RL Sbjct: 242 ISPHKLRHSFATHLLEHGADLRAVQAMLGHADISTTQIYTH-VSRARL 288 >gi|160915107|ref|ZP_02077320.1| hypothetical protein EUBDOL_01115 [Eubacterium dolichum DSM 3991] gi|158432906|gb|EDP11195.1| hypothetical protein EUBDOL_01115 [Eubacterium dolichum DSM 3991] Length = 311 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 40/291 (13%), Positives = 85/291 (29%), Gaps = 32/291 (10%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESR 126 L + +Y A + S+ + Q ++ + I H++ +E Sbjct: 3 LTDVCQDYLHYIQAIDRKAEATIASYTNDLRQYVQYMQTCKIEEVENIDYSHVQDFLEYL 62 Query: 127 KH--------------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 + + +S +TS+ V ++ +NP ++ K Sbjct: 63 RQDHYDEKGQCIHKKKSSASINHMITSLHVFHRYLSMTYPKLLNPVQNIRTKKAVQHLPV 122 Query: 173 PWTKEDMQQFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229 + +D+++ + + + E L GLR S+ C +Q + ++ Sbjct: 123 YFNMQDIERLLDSFRDSDAEIMDKAIVELLYGCGLRVSECCSLMLQQVYLEQGFLRVIGK 182 Query: 230 -GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--------NATQFSIWFKAKATKA 280 V + K L + K + Sbjct: 183 GNKERMVPMHARCKKALENYLTKVRKQRYARSNFVFINAKGQEITRQYIHVMIKKRLLAL 242 Query: 281 GVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 G++ SAH R A+ D GA + G + + YT ++ Sbjct: 243 GLDERLSAHSFRHSFASHLLDGGADLRVVQELLGHSDISTTQIYTHVQNKR 293 >gi|251787836|ref|YP_003002557.1| site-specific tyrosine recombinase XerC [Dickeya zeae Ech1591] gi|247536457|gb|ACT05078.1| tyrosine recombinase XerC [Dickeya zeae Ech1591] Length = 302 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 44/278 (15%), Positives = 91/278 (32%), Gaps = 21/278 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTP 130 + + L+ ++ S+ II G +++ + +R+ V K Sbjct: 11 AEAFLRYLRVERQLSPLTQRSYAHQLQVIIEMLSSSGIAEWQALDAAGVRAVVARSKRDG 70 Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +S Q L+++R L W V + + NP V PK + ++M + Sbjct: 71 LNAASLAQRLSALRSLLDWLVGRGELKANPARGVPAPKAGRHLPKNMDVDEMNRLLEIDL 130 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243 + R E + +GLR ++ H+ + K + + + Sbjct: 131 NDPLAVRDRAMLEVMYGAGLRLAELVGLDCGHINLESGEVWVMGKGSKERRLPVGATAVT 190 Query: 244 LLAMTPIGKETFFINND-------KQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 L +E + +D ++++ F K GV + + H +R A Sbjct: 191 WLTHWLAIREIYAPEDDAVFISSLGKRISMRNVQKRFAEWGVKQGVNSHVNPHKLRHSFA 250 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 T ++ + G + + YT D L Sbjct: 251 THMLESSGDLRAVQELLGHANLSTTQIYTH-LDFQHLA 287 >gi|126435536|ref|YP_001071227.1| site-specific tyrosine recombinase XerD [Mycobacterium sp. JLS] gi|126235336|gb|ABN98736.1| tyrosine recombinase XerD subunit [Mycobacterium sp. JLS] Length = 318 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 46/298 (15%), Positives = 98/298 (32%), Gaps = 37/298 (12%) Query: 63 SPRKKPTT-LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTK 117 +P + L + Y +A N+ S+ + G D K+T Sbjct: 2 APSAVRRSALDDQLQGYLDHLTIERGVAANTLSSYRRDLRRYSEHLTGRGVEDLAKVTES 61 Query: 118 HIRSGVESRKH----------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167 + + + + + SA + L ++R L ++A + ++ +V+ P Sbjct: 62 DVSDFLVALRRGDPDTGAQALSAVSAARALIAVRGLHRFATAEGLTDVDVARAVKPPTPG 121 Query: 168 TEGIRPWTKEDM--------QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219 + + +++ ++ + R E L +G R S++ + + Sbjct: 122 RRLPKSLSIDEVLALLDGAGGDSEADGPLTLRNRALLELLYSTGARISEAVGLDIDDVDT 181 Query: 220 NIFSIK-TQKTGTIITVELPDGFMKLLAMTPIGKETF-----------FINNDKQKMNAT 267 + S+ K G V + + L + F+N +++ Sbjct: 182 HARSVLLRGKGGKQRLVPIGRPAVSALDAYLVRGRPDLARRGRGTPAIFLNARGGRLSRQ 241 Query: 268 QFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + A +AG+ S H +R AT D GA + G +V + YT Sbjct: 242 SAWQVLQDAADRAGITSAVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYT 299 >gi|256828291|ref|YP_003157019.1| integrase family protein [Desulfomicrobium baculatum DSM 4028] gi|256577467|gb|ACU88603.1| integrase family protein [Desulfomicrobium baculatum DSM 4028] Length = 312 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 46/298 (15%), Positives = 99/298 (33%), Gaps = 27/298 (9%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVESRK 127 L Y + + + ++ + + G ++T I + + Sbjct: 13 ALFLLYLDAQ--RGYSPATVAAYGTDLEGAHLFLGRRSKGFDAPGEVTKADITAYLADLH 70 Query: 128 HTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ--- 181 SS + L+++R +++ +++ V +PC ++ PK + + Sbjct: 71 RRGLAKSSVCRKLSALRAFYRFLRQRKMVVEDPCAALANPKLPKVHPKVLNVDQAIHLVE 130 Query: 182 -FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239 + EG + E L SGLR S++ H+ + ++ K V L Sbjct: 131 TEITLDPEGLRDLALLEVLYGSGLRVSEALGLDFAHVDLDQKLVRVLGKGRKERLVPLTG 190 Query: 240 GFMKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWFKAKATKAGVNKS--AHG 288 + LA + F +Q +++ Q K A ++G S H Sbjct: 191 PAAERLARYIEQRGAFAPAAREQAVFLGKRGGRLSRKQADRIVKEMAVRSGAPCSISPHT 250 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISSVVDS 345 +R A+ AGA + G + + YT ++ + +++ D Sbjct: 251 LRHSFASHMLQAGADLRSVQELLGHSRISTTQRYTHLDLAQVMRVYDAAHPLAAKKDE 308 >gi|156972655|ref|YP_001443562.1| site-specific tyrosine recombinase XerC [Vibrio harveyi ATCC BAA-1116] gi|166918907|sp|A7N0V8|XERC_VIBHB RecName: Full=Tyrosine recombinase xerC gi|156524249|gb|ABU69335.1| hypothetical protein VIBHAR_00307 [Vibrio harveyi ATCC BAA-1116] Length = 313 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 40/301 (13%), Positives = 100/301 (33%), Gaps = 22/301 (7%) Query: 68 PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRS-- 121 P +L+ + + + L+++++ +++ + + + G D+ ++ +R Sbjct: 10 PNSLQKPLERFYEFLRSEKGLSLHTQRNYKQQLETMAHHLAEMGLKDWSQVDAGWVRQLA 69 Query: 122 -GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 SS L+S+R F + + + + NP V P++K + +++ Sbjct: 70 GKGMREGMKASSLATRLSSLRSFFDFLILRGEMLANPAKGVSAPRKKRPLPKNLDVDEVN 129 Query: 181 QFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236 Q + + R E + +GLR ++ V+ +Q ++ V Sbjct: 130 QLLEVNEDDPLAVRDRAMMELMYGAGLRLAELVSVDVRDVQLRSGELRVIGKGDKERKVP 189 Query: 237 LPDGFMKLLAMTPIGK--------ETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 + + + F++ +++ K V + S Sbjct: 190 FSGMATEWVGKWLRVRGDLAAPGEPALFVSKLGTRISHRSVQKRMAEWGQKQSVASHISP 249 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346 H +R AT ++ + G + + + YT D L + + Sbjct: 250 HKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTH-LDFQHLAQAYDQAHPRARKRN 308 Query: 347 D 347 D Sbjct: 309 D 309 >gi|262404865|ref|ZP_06081419.1| tyrosine recombinase XerC [Vibrio sp. RC586] gi|262348949|gb|EEY98088.1| tyrosine recombinase XerC [Vibrio sp. RC586] Length = 310 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 40/286 (13%), Positives = 94/286 (32%), Gaps = 22/286 (7%) Query: 68 PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGV 123 P L + + H L++ ++ +++ + + R G + ++ +R V Sbjct: 10 PNALAQPLERFYAYLHSEKGLSLYTQRNYKQQLETMARYLAQVGLTSWPQLDAAWVRQLV 69 Query: 124 ---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + + SS L+S+R + + + + NP V P+++ + ++M Sbjct: 70 VLGKRQGMKASSISTRLSSLRSFLDFLILRGELQANPAKGVSAPRKQRPLPKNLDVDEMA 129 Query: 181 QFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236 Q + + R E + SGLR ++ V+ + I+ V Sbjct: 130 QLLEVTDDDPLSIRDRAIMELMYGSGLRLAELVSIDVKDVNLRDGEIRVIGKGNKERKVW 189 Query: 237 LPDGFMKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKAGV--NKSA 286 + + + +++ +++ K V + S Sbjct: 190 FAGQAQEWVGNWLKLRSQLANSDETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISP 249 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R AT ++ + G + + + YT D L Sbjct: 250 HKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTH-LDFQHLA 294 >gi|323495291|ref|ZP_08100372.1| site-specific tyrosine recombinase XerC [Vibrio brasiliensis LMG 20546] gi|323310468|gb|EGA63651.1| site-specific tyrosine recombinase XerC [Vibrio brasiliensis LMG 20546] Length = 308 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 36/280 (12%), Positives = 94/280 (33%), Gaps = 22/280 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGV---ESRK 127 + + + L+++++ +++ + + G +++++ +R Sbjct: 16 LERFYEYLRSEKGLSLHTQRNYKQQLETMAHHLVHLGLKEWQQVDAGWVRQIASKGMRDG 75 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 SS L+S+R F + + + +A NP V P++K + +++ Q Sbjct: 76 MKASSIATRLSSLRSFFDFLILRGEMAANPAKGVSAPRKKRPLPKNLDVDEVGQLLEVNE 135 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243 + + R E + +GLR ++ V+ + + ++ V + Sbjct: 136 DDPLAVRDRAMMELMYGAGLRLAELVSVNVKDVSLSSGELRVIGKGDKERKVPFAGMATE 195 Query: 244 LLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293 + + F++ +++ K V + S H +R Sbjct: 196 WVTKWLKVRSSLAKSDETALFVSKLGVRISHRNVQKRMAEWGQKQSVASHISPHKLRHSF 255 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 AT ++ + G + + + YT D L Sbjct: 256 ATHMLESSNNLRAVQELLGHENISTTQIYTH-LDFQHLAD 294 >gi|189219127|ref|YP_001939768.1| Site-specific recombinase XerD [Methylacidiphilum infernorum V4] gi|189185985|gb|ACD83170.1| Site-specific recombinase XerD [Methylacidiphilum infernorum V4] Length = 315 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 44/306 (14%), Positives = 100/306 (32%), Gaps = 24/306 (7%) Query: 63 SPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHI 119 P+ + + I + S A+N+++ + ++ + + + HI Sbjct: 2 KPQPSEQSWQKTIEKALAFLAIERSHAINTQLLYRQILEKFLDWVLSHKLSIGSVRSSHI 61 Query: 120 RSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 ++ + SS + ++R LF++ Q + NP E P ++ + T Sbjct: 62 ELFLDEERKRGLSDSSIKITIIALRHLFEYLKEQNKIKTNPLDHKELPSIQSRLPQFLTT 121 Query: 177 EDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAG-VQHLQNNIFSIKTQKTGT 231 +++++ + + + E L SGLR S+ + + K Sbjct: 122 KEIEKLLQAPFPDTPLGWRDKAILELLYSSGLRVSELISLKLESYYPEHFQIKVLGKGNK 181 Query: 232 IITVELPDGFMKLLAMTP----------IGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 V + + L + F+N Q + ++ A G Sbjct: 182 ERAVPIGKCAKEALDKYIAEGRTKLLAKKTRGEVFLNQRGQPLTRSRIRQLIIHYARLGG 241 Query: 282 VNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 ++K H +R A+ + GA + G + + YT + L + R Sbjct: 242 IDKKVYPHLLRHTFASHLVENGADLRVIQELLGHANIATTQIYTH-VNLKHLKEIHRRCH 300 Query: 340 SSVVDS 345 + + Sbjct: 301 PRSLPT 306 >gi|37678273|ref|NP_932882.1| site-specific tyrosine recombinase XerC [Vibrio vulnificus YJ016] gi|37197012|dbj|BAC92853.1| site-specific recombinase XerC [Vibrio vulnificus YJ016] Length = 322 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 35/280 (12%), Positives = 92/280 (32%), Gaps = 22/280 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRS---GVESRK 127 + ++ + L+++++ +++ + + G + ++ +R Sbjct: 23 LDQFYEYLRAEKGLSLHTQRNYKQQLETMAEHLHSMGLKAWPQVDAGWVRQLAGKGMREG 82 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 SS L+S+R F + + + + NP V P++K + +++ Q Sbjct: 83 MKASSIATRLSSLRSFFDFLILRGILTANPAKGVSAPRKKRPLPKNLDVDEVNQLLEVNE 142 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243 + + R E + +GLR ++ V+ + I+ V ++ Sbjct: 143 DDPLAIRDRAIMELMYGAGLRLAELVDIDVRDVHLRSGEIRVIGKGNKERKVPFAGMAVE 202 Query: 244 LLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293 + + F++ +++ K V + + H +R Sbjct: 203 WVGKWLKVRSGLADPSEPALFVSKLGTRISHRSVQKRMAEWGQKQAVASHITPHKLRHSF 262 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 AT ++ + G + + + YT D L Sbjct: 263 ATHILESSNNLRAVQELLGHENISTTQIYTH-LDFQHLAD 301 >gi|161869695|ref|YP_001598862.1| integrase/recombinase [Neisseria meningitidis 053442] gi|161595248|gb|ABX72908.1| integrase/recombinase [Neisseria meningitidis 053442] Length = 291 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 43/273 (15%), Positives = 94/273 (34%), Gaps = 19/273 (6%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTP 130 LI ++ L N+ + ++I R+ + + + V Sbjct: 5 LIDRLLETLWLDRRLNQNTLNGYRRDLEKIARRLSQSGRTLKDADEADLAAAVYVDGEQR 64 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---- 186 SS + L++ + L+ W R+ NP ++ PK T++ + + + Sbjct: 65 SSQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLLATPDTDT 124 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-----------IKTQKTGTIITV 235 G + + E + +GLR S++ ++ + + + V Sbjct: 125 PHGLRDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITALGKGDKQRMVPMGQESAYWV 184 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294 E + L + + F++ K ++ + K A +AG+ + S H +R A Sbjct: 185 ERYYTEARPLLLKGRNCDALFVSQKKTGISRQLAWMIVKEYAGRAGIGHISPHSLRHAFA 244 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGAD 327 T G + G ++ + YT A+ Sbjct: 245 THLVQHGLDLRVVQDMLGHADLNTTQIYTHVAN 277 >gi|319649574|ref|ZP_08003730.1| tyrosine recombinase [Bacillus sp. 2_A_57_CT2] gi|317398736|gb|EFV79418.1| tyrosine recombinase [Bacillus sp. 2_A_57_CT2] Length = 300 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 45/279 (16%), Positives = 91/279 (32%), Gaps = 26/279 (9%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV------ESRK 127 L EY + + + + ++ + + +T + +K Sbjct: 11 LFIEYLQIE--KNYSQYTIEHYQHDISEFFMFMAEQAIADLTKVAYQDVRIYLTELYDKK 68 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 + S + ++S+R FK+ +R+E VA NP V PK + + + + +M Q + Sbjct: 69 MSRKSVARKISSLRSFFKFLLREEKVAENPFALVSIPKAQKKLPEFFYEAEMMQLFNACE 128 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFM 242 G + + E L +G+R S+ + ++ L + ++ K V Sbjct: 129 ASTPLGQRNKALLELLYATGIRVSECSQIRLKDLDMYLSTVLVRGKGSKERYVPFGSFAQ 188 Query: 243 KLLAMTPIG-----------KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289 L +E F+N + A K+ + H + Sbjct: 189 DALDTYINHGREKLLANGNVQENLFLNARGGPLTARGIRTILDRIIEKSSLTGKIHPHML 248 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 R AT GA + G + + YT + Sbjct: 249 RHTFATHLMANGADMRTVQELLGHAFLSSTQVYTHVTNE 287 >gi|300780929|ref|ZP_07090783.1| tyrosine recombinase XerD [Corynebacterium genitalium ATCC 33030] gi|300532636|gb|EFK53697.1| tyrosine recombinase XerD [Corynebacterium genitalium ATCC 33030] Length = 294 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 35/279 (12%), Positives = 83/279 (29%), Gaps = 20/279 (7%) Query: 71 LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFD-YRKITTKHIRSGVESRKH 128 L+ I ++ A + + + S + + FD + I + + + Sbjct: 4 LEEAIDDFADHALLVKGRSEATVKGYRSDLRTLAEVAPTFDDFTLIALRGWLADAMRQGL 63 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED-------MQQ 181 S+ + + R WA + Y+ + + P+ T Sbjct: 64 ARSTMARRTAAARSFSTWAYERGYLDSDVAARLVTPQINRHLPDVVTSSRAGELVEAEIN 123 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDG 240 S E ++ R E + +G+R ++ V + + V + Sbjct: 124 PDSDGPEAARDRAMLELMYATGMRVAELTGLDVDDVDTKQGLARVTGKGNKQRVVPFGER 183 Query: 241 FMKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWFKAKATKAGV-NKSAHGVR 290 + + + +++ Q + A + G + S H +R Sbjct: 184 ATAAIEEWKTRRTELVSDKSGHALFLGSRGGRIDQRQVRRVVERAAQRTGDTDLSPHALR 243 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +AT + GA + G ++ + YT + + Sbjct: 244 HSAATHMLEGGADLRVVQELLGHSSLQTTQIYTHVSAQR 282 >gi|255014711|ref|ZP_05286837.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_7] Length = 302 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 49/277 (17%), Positives = 97/277 (35%), Gaps = 25/277 (9%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGVESRK 127 LI ++ + + + + ++ DQ R G F+ +I + +RS + S Sbjct: 2 LIDDFLNYLRYERNYSNYTIGAYSKDLDQFQRYVREHREGVFNPGEIDSDFVRSWIVSLM 61 Query: 128 H---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-----WTKEDM 179 +P S + L+S++ FK+ +++ V+ NP V PK K Sbjct: 62 DEKLSPVSVNRKLSSLKSFFKFLMKRGIVSANPLRLVSGPKTKKPLPYFIKDSELEALLD 121 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239 EG + RL E L +G+R S+ + +K + Sbjct: 122 GDGFDEDFEGVRNRLVIEMLYDTGMRRSELIGIRNVDVDYEAMQVKVTGKRNKQRLIPFA 181 Query: 240 GFMKLLAMTPIGKE---------TFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHG 288 +K L + FF+ + +++ K + ++ + +S H Sbjct: 182 EGLKNLMLAYTEVRDREVEAAGEWFFVRKNGNQLSTGIVYNIVKKQLSEIPMLAKRSPHV 241 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 +R AT + GA + + G ++ YT Sbjct: 242 LRHSFATSMLNNGAELNTVKDLLGHSSLASTSVYTHT 278 >gi|294674799|ref|YP_003575415.1| tyrosine recombinase XerC [Prevotella ruminicola 23] gi|294473941|gb|ADE83330.1| tyrosine recombinase XerC [Prevotella ruminicola 23] Length = 292 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 44/290 (15%), Positives = 98/290 (33%), Gaps = 26/290 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRKHT 129 I+++ + + + + ++E + + T IR +ES Sbjct: 2 INQFLDYLRYERNTSPLTVQTYEESLRDFESYVTFRDKELSISSVDTDLIRDWMESLMDK 61 Query: 130 PSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ----- 181 +SA + L+++R +++A++++ V +P +V PK+ + + +M + Sbjct: 62 GNSASTINKKLSALRSFYRFALKRQLVKTDPAHAVIGPKKSKPLPQFLREGEMDRLIDGI 121 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDG 240 + R +GLR ++ + + + T K V Sbjct: 122 EWDSSFNNVRARTILLLFYEAGLRRAELVSLNDKDVDFDAAQLKVTGKRNKQRIVPFGAE 181 Query: 241 FMKLLAMTPIGKETFFIN--------NDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVR 290 + L + F + Q+++ +Q K + +S H +R Sbjct: 182 LAEALKQYQTARNEQFGETGGALFLSDKGQRISDSQVYQIVKKYLSMVTSLKKRSPHVLR 241 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGA--DRIRLGIKNSRR 338 AT + GA + + G +V E YT R+ + R Sbjct: 242 HTFATAMLNNGAGLETIKSLLGHASVSTTEIYTHTTFEQLKRIYKEAHPR 291 >gi|281422267|ref|ZP_06253266.1| integrase/recombinase XerD [Prevotella copri DSM 18205] gi|281403772|gb|EFB34452.1| integrase/recombinase XerD [Prevotella copri DSM 18205] Length = 294 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 43/290 (14%), Positives = 98/290 (33%), Gaps = 26/290 (8%) Query: 75 ISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESR--- 126 I ++ + + + + ++ + + + + + + IR+ +E Sbjct: 4 IDKFLEYLRSELNRSQRTVENYREDLKLFEQYARNLSESFTWESVDSDMIRNWMEHMIDA 63 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-----QQ 181 + +S + L+++++ +++A+ + YV +P S++ PK + + +M ++ Sbjct: 64 GNKATSVNRRLSALKMFYRFALVRHYVESDPAHSLKGPKESKPLPQFLKENEMDELLDRK 123 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDG 240 + + R +G+R S+ V + IK V D Sbjct: 124 MWGDDYDNVRARTIIILFYETGMRLSELIGLDVDDVNFIKKEIKITGKGNKQRIVPFGDE 183 Query: 241 FMKLLAMTPIGKETFFIN--------NDKQKMNATQFSIWFKA--KATKAGVNKSAHGVR 290 L+ + + + +M+ Q K + KS H +R Sbjct: 184 LKNALSEYLTLRAQRVMVKSGALLLADKGGRMSPVQVREIVKENLARVCSLKKKSPHVLR 243 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGA--DRIRLGIKNSRR 338 AT + GA L G + E YT R+ I+ R Sbjct: 244 HTFATAMLNHGAGIESLKRLLGHAKLSTTEIYTHTTFEQLKRVYIEAHPR 293 >gi|261405985|ref|YP_003242226.1| integrase family protein [Paenibacillus sp. Y412MC10] gi|261282448|gb|ACX64419.1| integrase family protein [Paenibacillus sp. Y412MC10] Length = 294 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 38/273 (13%), Positives = 91/273 (33%), Gaps = 24/273 (8%) Query: 74 LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGVESRKHT 129 + EY + L+ ++ S+ + + + + + R++ + V + Sbjct: 4 YLDEYVQYLEDEKGLSRSTIASYRADLQGFLAFAAEREVTHPREVNRTLLGLYVGRLRQQ 63 Query: 130 PSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 +A L +R F++ VRQ + +P ++ PK + + + T E + + S Sbjct: 64 GKAASSLLRCTASLRSFFQYLVRQAVIVQDPTQLLDNPKPERKPPKSLTVEQVDKLLSAP 123 Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241 G+ + + E L SG++ S+ + + + ++ G + + Sbjct: 124 DSGTPQGARDKAMLELLYASGIKVSELVNLSIHDIHLEMRFLRCAVSGGKERILPITPIA 183 Query: 242 MKLLAMTPIGKETFFINNDK----------QKMNATQFSIWFKAKATKAGVN--KSAHGV 289 + +A + + ++ F K AG++ + H + Sbjct: 184 AESVAFYVRDMRDKLMRDAGEDALFLNSLGTRLTRQGFWKIIKKYGKLAGIDEDITPHTL 243 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETY 322 R A GA + G + Y Sbjct: 244 RHSFAMHLLGNGADLRSVQEMLGHSALSTTGMY 276 >gi|225013068|ref|ZP_03703483.1| integrase family protein [Flavobacteria bacterium MS024-2A] gi|225002796|gb|EEG40777.1| integrase family protein [Flavobacteria bacterium MS024-2A] Length = 289 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 44/264 (16%), Positives = 84/264 (31%), Gaps = 24/264 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHIRSGVESRKHTPSSAIQFLT 138 L+ NS ++ + + + + + ++ +P + + L+ Sbjct: 7 RGLSENSIQNYILDVHALQYFLINEKIEESPTDCSLDSVQKFIYETAKILSPHTQARRLS 66 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194 +R F + + + Y NP +E PK + + E+++ + +G + R Sbjct: 67 GLRSFFDYLIFESYRTSNPTDLIEAPKLGRKLPDVLSTEEIELMINQINLSHPQGQRNRA 126 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKE 253 E L SG+R S+ + +L I+ V + + L Sbjct: 127 ILEILYGSGIRVSELTNLSLSNLFFEEDMIRVHGKGNKQRLVPMGGISKEFLEEYITETR 186 Query: 254 TFFINNDKQKM-----------NATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 + K K K A KA V K H R AT + Sbjct: 187 KNQKISVKDKDIVFLNRRGNGLTRQMIFTLIKDLAIKANVKKQVGPHTFRHSFATHLLEN 246 Query: 301 GATAHELMATYGWKTVDQAETYTK 324 GA + G +++ E YT Sbjct: 247 GADLRTIQILMGHESITTTEIYTH 270 >gi|329956681|ref|ZP_08297254.1| putative tyrosine recombinase XerC [Bacteroides clarus YIT 12056] gi|328524053|gb|EGF51129.1| putative tyrosine recombinase XerC [Bacteroides clarus YIT 12056] Length = 294 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 40/276 (14%), Positives = 96/276 (34%), Gaps = 24/276 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSGVESRKH 128 L + + + + + + + ++ + G+ + + +R + S Sbjct: 3 LTDSFLDYLLYERNYSKYTVEFYRTDILELQKFGEELLGNLTPSDVDVELVREWIASLMD 62 Query: 129 TPS---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 S + L+S+R +K+ +R+ V +P + RP++K + +M + Sbjct: 63 RGYAFNSINRKLSSIRTYYKYLLRKGVVESDPLQKITRPRKKKPLPVFLRESEMNRLLDD 122 Query: 186 W-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN---------NIFSIKTQKTGT 231 EG + R+ E +G+R S+ + + + Sbjct: 123 IDFGEGFEGCRDRMIVEMFYATGMRLSELVGLDDKDVDFLASLIKVVGKRNKQRLIPFDE 182 Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGV 289 + + + + P+ + FFI + ++ + + K +K +S H + Sbjct: 183 ELRCSMQEYVNERNKSFPVRSDAFFIRKNGGRITRSIVAYIVKRNLSKVVTVKKRSPHVL 242 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 R AT + GA + G +++ E YT Sbjct: 243 RHTFATAMLNNGADLGSIKELLGHESLATTEVYTHA 278 >gi|119899508|ref|YP_934721.1| integrase/recombinase [Azoarcus sp. BH72] gi|119671921|emb|CAL95835.1| integrase/recombinase [Azoarcus sp. BH72] Length = 305 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 49/278 (17%), Positives = 93/278 (33%), Gaps = 23/278 (8%) Query: 86 SLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVES--RKHTPSSAIQFLTSMR 141 LA N+ + S Q + + + + R+ P+S + +++ R Sbjct: 28 GLAANTIAGYRSDLAQFGAWLASRGTQLIEADESQLTAYLAEFSRRAKPASQRRLMSAWR 87 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFE 197 ++ + Q +A +P + ++ P R ++ ++ + + + R E Sbjct: 88 RFYRGLLGQRRIAQDPTVQLDAPVTGERFPRTLSEAQVESLLAAPDVDTIHGLRDRSMLE 147 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT-------- 248 L SGLR S+ + + I+ V D ++ L Sbjct: 148 LLYASGLRVSELVELKLFAISTGEGVIRVFGKGSKERLVPTGDIALEWLGRYLREARPAL 207 Query: 249 --PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGAT 303 + F++ M F K A KAG+ S H +R AT + GA Sbjct: 208 LRGRTCDEVFVSQRGAGMTRQMFWRIIKQYAPKAGIPAQRISPHTLRHAFATHLINHGAD 267 Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 + G + + YT A R RL ++R Sbjct: 268 LRVVQLLLGHADISTTQIYTHVA-RERLKQLHARHHPR 304 >gi|152979627|ref|YP_001345256.1| site-specific tyrosine recombinase XerC [Actinobacillus succinogenes 130Z] gi|171704362|sp|A6VQS4|XERC_ACTSZ RecName: Full=Tyrosine recombinase xerC gi|150841350|gb|ABR75321.1| tyrosine recombinase XerC [Actinobacillus succinogenes 130Z] Length = 295 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 38/271 (14%), Positives = 88/271 (32%), Gaps = 20/271 (7%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHT 129 + +Y L+ + ++ + G ++++T +R + + Sbjct: 4 ALQKYYDFLRIERRLSPYTLTNYRRQLSAVTELLTQNGIRSWQQVTPSVVRFILAESRKA 63 Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ---QFK 183 S L+++R + V QE + +NP + PK+ + +E + + Sbjct: 64 GLHEKSLALRLSALRQFLAYLVVQEELKVNPATGISAPKQGKYLPKNIDQEQIGKLLDNR 123 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFM 242 S + R E + SGLR S+ + H+ ++ K + + + Sbjct: 124 SNEPIDIRDRAMLELMYSSGLRLSELHGLDLNHVNLQSREVRVLGKGSKERILPVGHQAL 183 Query: 243 KLLAMTPIGKETFFINN-------DKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293 + + F + ++ + K G+ + + H +R Sbjct: 184 DAVLDWLQVRLRFNPKDNALFVSSQGGRLTPRAIQKRMEIWGVKQGLSTHLNPHKLRHSF 243 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324 AT +A A + G + + YT Sbjct: 244 ATHMLEASADLRAVQELLGHSNLATTQIYTH 274 >gi|240127425|ref|ZP_04740086.1| putative site-specific recombinase [Neisseria gonorrhoeae SK-93-1035] gi|268685800|ref|ZP_06152662.1| tyrosine recombinase xerC [Neisseria gonorrhoeae SK-93-1035] gi|268626084|gb|EEZ58484.1| tyrosine recombinase xerC [Neisseria gonorrhoeae SK-93-1035] Length = 305 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 38/293 (12%), Positives = 95/293 (32%), Gaps = 30/293 (10%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGV 123 Y ++ + ++ ++ +++ + ++ + + + Sbjct: 6 FAAYFDAYLENIVREGKSEHTVAAYRRDLEELFALLAQMPSEDAGGVPQDLSRRDFTAAL 65 Query: 124 ESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + + L++ R W V++ + +P ++ PK+ + +E + Sbjct: 66 RRLSQRGLDGRTLARKLSAWRQYCAWLVKRGLMRADPTADIKPPKQPERVPKALPQEWLN 125 Query: 181 QFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIIT 234 + +G + FE + SGLR S+ + + + T K Sbjct: 126 RMLDLPVDGGDPLAVRDYALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQ 185 Query: 235 VELPDGFMKLLAMTPIGKETF------FINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 V L ++ L ++T F + +++ Q ++ A + G + S Sbjct: 186 VPLTGKSVEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLESWAAQYGDGRHVSP 245 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 H +R A A + G ++ + YTK L + R+ Sbjct: 246 HMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK------LDFDHIARL 292 >gi|254804633|ref|YP_003082854.1| putative site-specific recombinase/integrase [Neisseria meningitidis alpha14] gi|254668175|emb|CBA04865.1| putative site-specific recombinase/integrase [Neisseria meningitidis alpha14] Length = 291 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 43/273 (15%), Positives = 92/273 (33%), Gaps = 19/273 (6%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTP 130 LI ++ L+ N+ + ++I R+ + + + V Sbjct: 5 LIDRLLETLWLDRRLSQNTLNGYRRDLEKIARRLSQSGRMLKDADEADLAAAVYVDGEQR 64 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---- 186 SS + L++ + L+ W R+ NP ++ PK T++ + + + Sbjct: 65 SSQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLLATPDTDT 124 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL 245 G + + E + +GLR S++ + + I K V + + Sbjct: 125 PHGLRDKALLELMYATGLRVSEAVGLNFGSVDLDRGCITALGKGDKQRMVPMGQESAYWV 184 Query: 246 AMTPIG----------KETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294 + F++ K ++ + K A +AG+ + S H +R A Sbjct: 185 GRYYTEARPALLKGRSCDALFVSQKKTGISRQLAWMIVKEYAGRAGIGHISPHSLRHAFA 244 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGAD 327 T G + G ++ + YT A+ Sbjct: 245 THLVQHGLDLRVVQDMLGHADLNTTQIYTHVAN 277 >gi|331012748|gb|EGH92804.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 299 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 38/296 (12%), Positives = 87/296 (29%), Gaps = 24/296 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR------SGVESRK 127 + Y ++ ++ ++ +++ I+ + + Sbjct: 5 LDAYCMHLRSERQVSPHTLEAYRRDLGKVLAYCQKAQLSSWNDLDIQHLRSFTARQHQQG 64 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + S + L+++R +K+ R+ +P + PK + + Q Sbjct: 65 QSSRSLARMLSAVRGFYKYLNREGICQHDPANGLSPPKGDRRLPKTLDTDRTAQLLDGGV 124 Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFM 242 E + + E L SGLR S+ + L K + + Sbjct: 125 EDDFLAHRDQAILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVGSKAR 184 Query: 243 KLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSA 294 + L + + F++ +++ + KA + G N H +R A Sbjct: 185 QALEIWLPLRALTNPQDDAVFVSQQGKRLGPRTIQVRLKAAGERELGQNLHPHMLRHSFA 244 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG---IKNSRRISSVVDSDD 347 + ++ + G + + YT D L R +DD Sbjct: 245 SHLLESSQDLRAVQELLGHADIKTTQIYTH-LDFQHLATVYDSAHPRAKRKGAADD 299 >gi|300741394|ref|ZP_07071415.1| putative tyrosine recombinase XerC [Rothia dentocariosa M567] gi|300380579|gb|EFJ77141.1| putative tyrosine recombinase XerC [Rothia dentocariosa M567] Length = 339 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 47/290 (16%), Positives = 87/290 (30%), Gaps = 34/290 (11%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSGVESRKHT-- 129 Y + + + + S+ S G I + IR + S Sbjct: 44 FERYLRYEKYR--SEETIRSYISDLYGFFGFIGRRGISRVEDINLQLIREWLGSMHLKQN 101 Query: 130 -PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM--------- 179 ++ + +++R F WA +E + NP + PKR ++E M Sbjct: 102 AKTTVARRGSTLRTFFSWAHEEELITENPTRGMSTPKRDRHLPAVLSQEQMSSVLDTVAL 161 Query: 180 -QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVEL 237 + + E L SG+R S+ + + +++ V L Sbjct: 162 RCRENPQDIRMLRLWAVLEVLYSSGMRISELTGLNLSSIDRANKTVRVIGKGNKERVVPL 221 Query: 238 PDGFMKLLAMTPIGKETFFIN------------NDKQKMNATQFSIWFKAKATKAGVNK- 284 MK+L+ ++I ++ N Q + Sbjct: 222 GTPAMKVLSQWVKIGRPYWIAKGSRDVTALFIGPRGKRANPRQIREDISRILRTLEDTEV 281 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 AH +R +AT D GA + G ++ + YT RL Sbjct: 282 SGAHVLRHSAATHLVDGGADIRTVQELLGHASLSTTQIYTH-VSMKRLAD 330 >gi|313674236|ref|YP_004052232.1| integrase family protein [Marivirga tractuosa DSM 4126] gi|312940934|gb|ADR20124.1| integrase family protein [Marivirga tractuosa DSM 4126] Length = 379 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 42/279 (15%), Positives = 97/279 (34%), Gaps = 21/279 (7%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSS 132 Y + A ++ S+ + F++ I ++ + I+ +++ K++ SS Sbjct: 109 ENYLNELNQRRYACSTVKSYIACFERFINYYSKKKMTELGEEEIKKFIQNLIDKKYSDSS 168 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 + +++ ++ + + P+++ +KE++ Q + Sbjct: 169 VNMHINAIKFYYEVVEKMPNRFYDFAR----PQKEERLPEVLSKEEILQ-MIANCHNLKH 223 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250 + L +GLR S+ + + I+ K L + + L Sbjct: 224 KCIVSLLYSAGLRRSELLNLKLTDIDSGRMSILIRQAKGKKDRISILGNTILDDLRAYFK 283 Query: 251 GKETFFINN---DKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAH 305 Q+ ++T S K A +AG+ K + H +R AT +AG Sbjct: 284 SYRPKVFLFEGAQGQQYSSTSVSKIVKKTAQRAGIKKRVTPHMLRHSFATHLLEAGTDLR 343 Query: 306 ELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 + + G + E YT + ++I + +D Sbjct: 344 YIQSLLGHNNSNTTEIYTHV------AVNAFKKIRNPLD 376 >gi|317153571|ref|YP_004121619.1| tyrosine recombinase XerC [Desulfovibrio aespoeensis Aspo-2] gi|316943822|gb|ADU62873.1| tyrosine recombinase XerC [Desulfovibrio aespoeensis Aspo-2] Length = 313 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 39/278 (14%), Positives = 94/278 (33%), Gaps = 25/278 (8%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIR---SG 122 ++ + + + S+ + +Q ++T H+R + Sbjct: 11 GEMLRGFLAHLAVEKGYSEATIRSYGTDLEQFDGFLKRSKRSLEHPERVTRDHVRSFLAE 70 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + + ++ + L+S+R F++ +R + +P ++ PK++ + + Sbjct: 71 MHRLRLGKATMGRKLSSLRAYFRYLLRHRMITTDPTATIRNPKQEKRHPQVLNVDQAVAM 130 Query: 183 KSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------ 232 EG + E L SGLR S++ + + +++ + + + Sbjct: 131 MEAMIEPDPEGLRDLALAEVLYGSGLRISEAVGLDLNDVDSDVIRVTGKGSKERIVPLSD 190 Query: 233 ----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286 + L+ + F +++N Q + AG+ K Sbjct: 191 AAVKRIRRYMEQRHALIGDNYAEQALFLSVRSGKRLNRRQANRIVAKLGGLAGLPKDVHP 250 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT +AGA + G + + + YT Sbjct: 251 HMLRHSFATHMLEAGADLRSVQELLGHERLTTTQRYTH 288 >gi|77462632|ref|YP_352136.1| putative tyrosine recombinase [Rhodobacter sphaeroides 2.4.1] gi|77387050|gb|ABA78235.1| Putative Tyrosine recombinase [Rhodobacter sphaeroides 2.4.1] Length = 341 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 78/332 (23%), Positives = 137/332 (41%), Gaps = 18/332 (5%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 P V + R R G + Y R+ R + F+ A+++ +R R + Sbjct: 3 PRVHRVR-RGGTVYKYHRRTRKELPRDVPEDDPRFVAAWLAE-----EQRAPTVRSRSQA 56 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128 T+ Y S + L+ R + ++I + + + +HIR+ +E Sbjct: 57 GTIAAACEAYLGSRSYRELSDGYRPVIRRHVERIKEQGEKALLKDLLPRHIRADLEPL-- 114 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-GIRPWTKEDMQQFKSFWS 187 +P A L + R L ++ + + + +P V+R K G WT ED++ F++ W Sbjct: 115 SPPVASSRLKAWRKLAEFWLLKGMLDADPSEGVKRKKMGKVAGFTEWTAEDLEAFRARWP 174 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--------QNNIFSIKTQKTGTIITVELPD 239 G+ RLA E ++G RC D R G Q + T L + Sbjct: 175 IGTAQRLALELYQWTGARCVDVIRLGPQMVGRDGVLTYVQQKTGNPAHVPWTCPAFGLEE 234 Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISA 298 L+ P+G + + + S WF A A +AG+ ++AHG+RK+ A Sbjct: 235 QRADLMRCLPVGSPVYMLTEYGKPRTQKGVSQWFSAAAREAGLESRTAHGLRKYRMNALA 294 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIR 330 + GA+ + + G T+ + + YT+ ADR R Sbjct: 295 EHGASVLVMQSWVGHTTLLEVQEYTRRADRRR 326 >gi|269103726|ref|ZP_06156423.1| tyrosine recombinase XerC [Photobacterium damselae subsp. damselae CIP 102761] gi|268163624|gb|EEZ42120.1| tyrosine recombinase XerC [Photobacterium damselae subsp. damselae CIP 102761] Length = 306 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 39/286 (13%), Positives = 95/286 (33%), Gaps = 22/286 (7%) Query: 68 PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSGV 123 PT+L + + + L+++++ +++ I + + ++++ +R Sbjct: 7 PTSLSRPLERFYEYLRSERELSLHTQQNYKRQLSTIAEQLVEMQVTSWQQLDAGWVRQIA 66 Query: 124 ESRKHTPSSAIQ---FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + A L+++R + V Q + NP V PK+ + ++M Sbjct: 67 SKGMRSGLKASSLGMRLSALRSFLDFLVFQGDLKANPAKGVSAPKKARPLPKNLDVDEMD 126 Query: 181 QFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236 Q S + + R E + +GLR S+ ++ +Q ++ V Sbjct: 127 QLLSVEGDDPLSIRDRAMMELMYGAGLRLSELVGLNLKDIQLTKGDLRVIGKGDKERIVP 186 Query: 237 LPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 + + + F++ +++ + K V + + Sbjct: 187 FSGLAKEWVGNWLKVRATLAHSDEPALFVSKRGMRISNRNVQKRMEEWGQKQAVSSHINP 246 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R AT ++ + G + + YT D L Sbjct: 247 HKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTH-LDFQHLA 291 >gi|149191484|ref|ZP_01869733.1| site-specific tyrosine recombinase XerC [Vibrio shilonii AK1] gi|148834672|gb|EDL51660.1| site-specific tyrosine recombinase XerC [Vibrio shilonii AK1] Length = 313 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 37/295 (12%), Positives = 96/295 (32%), Gaps = 22/295 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRS---GVESRK 127 + + + L+++++ ++ + + + + G + ++ +R Sbjct: 14 LERFYEYLRSEKGLSLHTQRNYRQQLETMGMHLHEMGIGAWTQVDAGWVRQLAGKGMREG 73 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 SS L+S+R F + + + + NP V P+++ + +++ Q Sbjct: 74 MKASSIATRLSSLRSFFDFLILRGELTANPAKGVSAPRKQRPLPKNLDVDEVNQLLEVDE 133 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243 + + R E + +GLR ++ V+HL + ++ V + Sbjct: 134 DDPLAVRDRAMMEMMYGAGLRLAEMVSIDVKHLNLSSGELRVIGKGNKERKVPFSGYATE 193 Query: 244 LLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293 G+ F++ +++ K + + S H +R Sbjct: 194 WAKKWLKVRGELAKPGEVALFVSKLGTRISHRSVQKRMAEWGQKQSLASHVSPHKLRHSF 253 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 AT ++ + G + + + YT D L + + P Sbjct: 254 ATHMLESSNNLRAVQELLGHENISTTQIYTH-LDFQHLAQAYDQAHPRAHKNGTP 307 >gi|325266806|ref|ZP_08133478.1| tyrosine recombinase XerD [Kingella denitrificans ATCC 33394] gi|324981738|gb|EGC17378.1| tyrosine recombinase XerD [Kingella denitrificans ATCC 33394] Length = 289 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 41/274 (14%), Positives = 94/274 (34%), Gaps = 19/274 (6%) Query: 75 ISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTPS 131 I + + LA N+ ++ ++ + D++ + + V + PS Sbjct: 4 IDRFLEHLWLQERLAHNTLEAYRHDLHKVAERLAAAQTDWQHADNRQLADAVYAADEQPS 63 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS---- 187 + + L++++ +++ ++ NP ++ K +P ++ + + Sbjct: 64 TQSRTLSAVKKWYQYLNDTQHRHDNPSRDLKAAKIPRSLPQPVSEAQIDALLAAPDTDTL 123 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLA 246 G + + E + +GLR S++ + + L K V L + L Sbjct: 124 HGLRDKALLELMYATGLRVSEAVKLSLNELDLTRGMVNTIGKGNKQRIVPLGEVAADWLE 183 Query: 247 MTPIG----------KETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSAT 295 F++ K ++ A + G+ S HG+R AT Sbjct: 184 RYLHTARPELLKGQACAYVFVSQKKVGISRQLAWQVVAKYAQQVGLPALSPHGLRHAFAT 243 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + GA + G +++ E YT A+ Sbjct: 244 HLVNHGADLRVVQLLLGHESLTTTEIYTHVANAR 277 >gi|163803624|ref|ZP_02197489.1| tyrosine recombinase [Vibrio sp. AND4] gi|159172572|gb|EDP57432.1| tyrosine recombinase [Vibrio sp. AND4] Length = 313 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 37/286 (12%), Positives = 95/286 (33%), Gaps = 22/286 (7%) Query: 68 PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRS-- 121 P +L+ + + + L+++++ +++ + + + G D+ ++ +R Sbjct: 10 PNSLQKPLQRFYEFLRSEKGLSLHTQRNYKQQLETMAQHLVEMGLKDWSQVDASWVRQLA 69 Query: 122 -GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 SS L+S+R F + + + ++ NP V P++K + +++ Sbjct: 70 GKGMREGMKASSVATRLSSLRSFFDFLILRGEMSANPAKGVSAPRKKRPLPKNLDVDEVS 129 Query: 181 QFKSFWS---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236 Q + R E + +GLR ++ ++ +Q ++ V Sbjct: 130 QLLEVNEGDALAVRDRAMMELMYGAGLRLAELVSVDMRDIQLRSGELRVIGKGDKERKVP 189 Query: 237 LPDGFMKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKAGV--NKSA 286 + + + + +++ K V + S Sbjct: 190 FSGMATEWVGKWLRVRGDIAAPGEPALFVSKLGTRISHRSVQKRMAQWGQKQSVASHISP 249 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R AT ++ + G + + + YT D L Sbjct: 250 HKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTH-LDFQHLA 294 >gi|326773392|ref|ZP_08232675.1| tyrosine recombinase XerD [Actinomyces viscosus C505] gi|326636622|gb|EGE37525.1| tyrosine recombinase XerD [Actinomyces viscosus C505] Length = 311 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 45/286 (15%), Positives = 94/286 (32%), Gaps = 38/286 (13%) Query: 78 YRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVE--------S 125 Y L+ ++ ++E + +R G + ++ + +E + Sbjct: 8 YLAHLRVERGLSPHTLSAYERDLGRYLRYLRSAGISAPQDVSRNDVAGFLEVLRTGSDGA 67 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 R SSA + +T++R K+ + + + +P +V P+ + +++ + Sbjct: 68 RPLASSSASRTVTAVRGWHKFLLAEGTTSEDPSATVRPPQPGRRLPKALGVDEVCRLLEA 127 Query: 186 WSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239 + R E L +G R S++ V L + ++ K V + Sbjct: 128 AGVDDSPVSLRDRALLEVLYATGARISEAVGLVVDDLDTDSRLLRLFGKGRKERVVPMGA 187 Query: 240 GFMKLLAMT-----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV------ 282 + L G F+N + ++ + A +AG+ Sbjct: 188 YAWEALDAYLVRGRPVLAEKGRGVPQVFLNTLGRPLSRQSAWAVLQQAAERAGLIGTDGA 247 Query: 283 ---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 S H +R AT GA + G +V + YTK Sbjct: 248 DERRISPHTLRHSFATHLLAGGADVRVVQEMLGHASVTTTQIYTKV 293 >gi|303242648|ref|ZP_07329122.1| integrase family protein [Acetivibrio cellulolyticus CD2] gi|302589787|gb|EFL59561.1| integrase family protein [Acetivibrio cellulolyticus CD2] Length = 298 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 44/279 (15%), Positives = 100/279 (35%), Gaps = 24/279 (8%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFD-YRKITTKHIRSGVES 125 L + E+ ++ + ++ S F Q + G +TT IR + Sbjct: 3 LDYYFDEFIDYLKAEKDVSHYTVDNYTSDFKQFLNFLRVNGIQPKLNTVTTPIIRRYLAH 62 Query: 126 RK----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 K + + + + + +K+ + QEY+ NP ++ PK + + E++Q Sbjct: 63 LKTDKNYAVETIRRRVHCLSSYYKFLMEQEYIMKNPMFAIHAPKSPETIPKYLSIEEIQL 122 Query: 182 FKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIIT 234 + + S + FE L +G+R + + I +++ K Sbjct: 123 LLTMPQKYSPDSVLRNLCIFECFLMTGMRRQELLDLNWDDIDFGEKIITVRNGKGKKQRV 182 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDK-----QKMNATQFSIWFKAKATKAGVNK---SA 286 + + + + L + + +++AT F+ K+G++K + Sbjct: 183 IPMTEPLISDLWKYLQTRLPLTNHALFISAKGNRLSATPLEQTFRLYMRKSGLDKKGYTI 242 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 H +R A+ A GA+ + G ++ + Y Sbjct: 243 HTLRHTYASHLALNGASILSIQKLLGHSDLNSTQIYAHV 281 >gi|320326565|gb|EFW82616.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. glycinea str. B076] gi|320331369|gb|EFW87310.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. glycinea str. race 4] gi|330881323|gb|EGH15472.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. glycinea str. race 4] Length = 299 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 38/296 (12%), Positives = 88/296 (29%), Gaps = 24/296 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR------SGVESRK 127 + Y ++ ++ ++ +++ I+ + + Sbjct: 5 LDAYCMHLRSERQVSPHTLEAYRRDLSKVLAYCQKAQLSSWNDLDIQHLRSFTARQHQQG 64 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + S + L+++R +K+ R+ +P + PK + + + Q Sbjct: 65 QSSRSLARMLSAVRGFYKYLNREGICQHDPANGLSPPKGERRLPKTLDTDRTAQLLDGGV 124 Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFM 242 E + + E L SGLR S+ + L K + + Sbjct: 125 EDDFLAHRDQAILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVGSKAR 184 Query: 243 KLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSA 294 + L + + F++ +++ + KA + G N H +R A Sbjct: 185 QALEIWLPLRALTNPQDDAVFVSQQGKRLGPRTIQVRLKAAGERELGQNLHPHMLRHSFA 244 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG---IKNSRRISSVVDSDD 347 + ++ + G + + YT D L R +DD Sbjct: 245 SHLLESSQDLRAVQELLGHADIKTTQIYTH-LDFQHLATVYDSAHPRAKRKGAADD 299 >gi|311113476|ref|YP_003984698.1| tyrosine recombinase XerC [Rothia dentocariosa ATCC 17931] gi|310944970|gb|ADP41264.1| tyrosine recombinase XerC [Rothia dentocariosa ATCC 17931] Length = 356 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 48/298 (16%), Positives = 88/298 (29%), Gaps = 34/298 (11%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSGVESRKHT-- 129 Y + + + + S+ S G + + IR + S Sbjct: 61 FERYLRYEKYR--SEETIRSYISDLCGFFGFIGRRGISRVEDVNLQLIREWLGSMHLKQN 118 Query: 130 -PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM--------- 179 ++ + +++R F WA +E + NP + PKR ++E M Sbjct: 119 AKTTVARRGSTLRTFFSWAHEEELITENPTRGMSTPKRDRHLPAVLSQEQMSSVLDTVAL 178 Query: 180 -QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVEL 237 + + E L SG+R S+ + + +++ V L Sbjct: 179 RCRENPQDIRMLRLWAVLEVLYSSGMRISELTGLNLSSVDRANKTVRVIGKGNKERVVPL 238 Query: 238 PDGFMKLLAMTPIGKETFFI------------NNDKQKMNATQFSIWFKAKATKA-GVNK 284 MK+L+ ++I ++ N Q Sbjct: 239 GTPAMKVLSQWVKIGRPYWIAKGSRDVTALFIGPRGKRANPRQIREDISRILRTLENTEV 298 Query: 285 S-AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 S AH +R +AT D GA + G ++ + YT RL R Sbjct: 299 SGAHVLRHSAATHLVDGGADIRTVQELLGHASLSTTQIYTH-VSMKRLADTYIRAHPR 355 >gi|152976197|ref|YP_001375714.1| site-specific tyrosine recombinase XerC [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152024949|gb|ABS22719.1| tyrosine recombinase XerC [Bacillus cytotoxicus NVH 391-98] Length = 299 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 40/287 (13%), Positives = 95/287 (33%), Gaps = 27/287 (9%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126 +K L+ + + + + S+++ + ++ G + +T +R + + Sbjct: 3 VKKLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYVDVRLYLTTL 62 Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----M 179 S + ++S+R L+++ +R+ Y NP PK++ + E+ Sbjct: 63 HDEKLARKSVARKVSSLRSLYRFLMREGYREDNPFALASLPKKEWSIPKFLYAEELEKLF 122 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238 + + G + + E + +G+R S+ + + ++ +I K + Sbjct: 123 EVSDTKTPLGQRNQALLELMYATGIRVSECVTLKLTDIDFSVGTILVMGKGKKQRYIPFG 182 Query: 239 DGFMKLLAMTPI------------GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284 L + F+N + K + Sbjct: 183 SYAQDALITYIENGRKQLAKKTEEYSQMVFLNAKGVPLTDRGVRYILNELIKKTSLTMRI 242 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 S H +R AT D G+ + G + + + YT + RL Sbjct: 243 SPHMLRHTFATHMLDEGSDLRAVQELLGHENLSTTQIYTH-VSKERL 288 >gi|296126655|ref|YP_003633907.1| tyrosine recombinase XerD [Brachyspira murdochii DSM 12563] gi|296018471|gb|ADG71708.1| tyrosine recombinase XerD [Brachyspira murdochii DSM 12563] Length = 310 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 53/288 (18%), Positives = 98/288 (34%), Gaps = 24/288 (8%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKHT 129 ++S Y L+ N+ S++ + K T K I + RK Sbjct: 10 EILSMYLNYEAVEKGLSSNTLESYKRDIVIYLDFLTRNKKTILKATRKDIEKFLSERKEQ 69 Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + + S+ L+K+ V + Y++ NP ++E + K T ++ S Sbjct: 70 GSKSRTVARNKVSIVNLYKFLVMENYISKNPTDNLEVIRLKRVLPESLTTTEVDDLLSVH 129 Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 +E G + + FE + SGLR S+ C + + +K + V + D Sbjct: 130 NEKTDKGLRDKAIFELMYSSGLRVSEICSLRIDDIFFEGKYLKIRGKGNKERIVPINDRA 189 Query: 242 MKLLAMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289 + +L + N K++ K K+ + K+ H + Sbjct: 190 LDILQRYIQTSRVIMVKGKKTSELFLNFRGDKISRVGIWKIVKETMKKSNITKNVYPHTL 249 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 R AT GA + G + E YT D L + ++ Sbjct: 250 RHSFATHLIQHGADLRAVQRMLGHSDITTTEIYTH-VDSSHLKKQIAK 296 >gi|261856623|ref|YP_003263906.1| tyrosine recombinase XerD [Halothiobacillus neapolitanus c2] gi|261837092|gb|ACX96859.1| tyrosine recombinase XerD [Halothiobacillus neapolitanus c2] Length = 311 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 45/287 (15%), Positives = 92/287 (32%), Gaps = 23/287 (8%) Query: 72 KWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKH 128 LI E+ + L+ N++ ++ S +++ + + + R Sbjct: 19 ARLIDEFINALWLEEGLSKNTQSAYRSDLRLAALDWQRAGLRLNEVSAEDLPRLLGERMS 78 Query: 129 TPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + SA + +S++ F W +Q +P ++ P+ ++ ++++ + Sbjct: 79 SGQSARSIARLRSSLKRFFGWLRQQNLRTDDPTTALAAPRLPRALPYALSENEVERLLAA 138 Query: 186 W----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDG 240 G + R E L SGLR ++ + ++ V + D Sbjct: 139 PDVSEPIGLRDRAMLELLYASGLRVTELIGLQFGQINLVQGVLRITGKGNKDRLVPIGDE 198 Query: 241 FMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288 + L+ F+ M F K A AG+ + S H Sbjct: 199 AIVWLSRYLREARSGLLGRRESANVFVTERGDGMTRQAFWYRIKHHALAAGLARLPSPHT 258 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 +R AT + GA L G + + YT A + Sbjct: 259 LRHAFATHLLNHGADLRVLQMLLGHADLSTTQIYTHVATTRLKALHA 305 >gi|167835679|ref|ZP_02462562.1| site-specific tyrosine recombinase XerD [Burkholderia thailandensis MSMB43] Length = 320 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 49/315 (15%), Positives = 97/315 (30%), Gaps = 28/315 (8%) Query: 47 YMSALTGSTPKREYINSPR--KKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQII 103 A + P E SP T++ + + L+ N+ ++ Sbjct: 6 RALAPSADRPADESAASPAWLDSRTSIDLFCDAMWLEH----GLSRNTLDAYRRDLQLFA 61 Query: 104 RKSGDFDYRKITTK---HIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159 + + + + +R +S+ + L+ R + WAVR+ A++P L Sbjct: 62 QWLAARHAASLDRAERPMLEGYIAARSDGKATSSNRRLSVFRRYYGWAVREHRTAVDPTL 121 Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQ 215 + K+ ++ ++ + + + R E + SGLR S+ Sbjct: 122 RIASAKQAPRFPSTLSEAQVEALLAAPDVDTPLGLRDRTMLELMYASGLRVSELVTLKTV 181 Query: 216 HLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETF----------FINNDKQKM 264 + N ++ V + + G F+ M Sbjct: 182 EVGLNEGVVRVTGKGSKERLVPFGEVAHGWIERYLRGARPALLGARAADALFVTARGDGM 241 Query: 265 NATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 QF K A +A V + S H +R AT + GA + G + + Y Sbjct: 242 TRQQFWNIIKRHAQQADVRVHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIY 301 Query: 323 TKGADRIRLGIKNSR 337 T A + + Sbjct: 302 THVARERLKMLHAAN 316 >gi|58617409|ref|YP_196608.1| integrase/recombinase [Ehrlichia ruminantium str. Gardel] gi|58417021|emb|CAI28134.1| Integrase/recombinase [Ehrlichia ruminantium str. Gardel] Length = 318 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 39/281 (13%), Positives = 85/281 (30%), Gaps = 29/281 (10%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRSGV 123 ++++++ ++N+ +S+ D++I D + +R Sbjct: 14 DIVNDWKIWMEQEKRYSLNTVVSYVRDLDKLIEFLHKSTGCSVTLNDLVHVKIGDLRKWF 73 Query: 124 ESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED-- 178 SR + + L+++R F++ R Y+ + RP K + Sbjct: 74 ASRYQCGVEAVTNARSLSALRNFFRYLSRMYYIDSQAVFYLSRPHLKKTLPKVLAGSHIE 133 Query: 179 ----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234 + + L SG R S+ Q ++ + I + + Sbjct: 134 IILNYYKQLPQNWVDMRNFAIMMLLYGSGFRISEVVNLKFQDVREDRLFITGKGNKERVV 193 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKM---------NATQFSIWFKAKATKAGVNK- 284 L + L + Q + + T F+ + + G+ Sbjct: 194 PILSVVYKSLCQYIECCPYYLGARPNNQYIFVGVRGKKLSRTHFANIMQKLRAEMGLPDI 253 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +AH R AT GA + G ++ + YT Sbjct: 254 TTAHTFRHSFATHLFIGGADIRSVQELLGHTSLSTTQIYTH 294 >gi|226227035|ref|YP_002761141.1| tyrosine recombinase XerD [Gemmatimonas aurantiaca T-27] gi|226090226|dbj|BAH38671.1| tyrosine recombinase XerD [Gemmatimonas aurantiaca T-27] Length = 312 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 44/267 (16%), Positives = 89/267 (33%), Gaps = 24/267 (8%) Query: 88 AVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMR 141 + + ++ + R G + IT +R V K SS + ++++R Sbjct: 36 SPRTIEAYRRDVIRCAAQMRAMGITQAKDITPAALREFVYHLKDLGLAGSSIRRNISALR 95 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ----PRLAFE 197 F+ V + V +P ++ P+R + +++ + + + R E Sbjct: 96 TWFRIMVAEGLVTTDPTERLDSPQRWRTLPEVLSVDEVTRLLAAPGLDERLAFRDRAMLE 155 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKETF- 255 +GLR S+ V+ + ++ K V + + +A+ Sbjct: 156 LAYGAGLRVSEWIGMSVKDVMLEDSLVRVLGKGNKERLVPIGRSAIGAVAVYLRELRPVL 215 Query: 256 ---------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304 F+N ++ + AG+ K S H +R AT + GA Sbjct: 216 ERGGGKGILFLNGRGAPLSRMGAWKLVRKYVGMAGIEKPVSPHTLRHSFATHLLEGGADL 275 Query: 305 HELMATYGWKTVDQAETYTKGADRIRL 331 + G + + YT DR L Sbjct: 276 RAVQEMLGHADIATTQIYTH-VDREYL 301 >gi|170745401|ref|YP_001766858.1| integrase family protein [Methylobacterium radiotolerans JCM 2831] gi|170659002|gb|ACB28056.1| integrase family protein [Methylobacterium radiotolerans JCM 2831] Length = 305 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 41/291 (14%), Positives = 94/291 (32%), Gaps = 19/291 (6%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129 L Y + L+ N+ ++ ++I G + +T + + + Sbjct: 3 LNEAGEAYLRHCQLERHLSSNTLAAYRQDISELIAHFGLIEVVAVTGDALVTYADHLSKR 62 Query: 130 ----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLS--VERPKRKTEGIRPWTKEDMQQFK 183 P++ + L R LF+W R ++ +P + T E + + Sbjct: 63 RGLAPATVKRRLVCARGLFRWLTRTGALSADPFGGTEIRVRIPDRLPRCLATDEMARLAR 122 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-------- 235 + + RLA L +G+R + + + + I+ G Sbjct: 123 AADDASATTRLATLLLFATGMRVGELVSVRLADIDLDRDVIRIVGKGNRQRQVVIPNESL 182 Query: 236 -ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKF 292 + + + E F + + + + A AG+ + H +R Sbjct: 183 KDAIREYARTYHADDRASERFLREPNGRSLTTAAIRTRLRRLAKAAGLVRTVTPHMLRHT 242 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRI-RLGIKNSRRISSV 342 +AT +AG + G +++ + YT +D R ++ + + Sbjct: 243 AATELLEAGVDIRFVQRLLGHRSILTTQIYTHVSDIALRTAVRGADLFGRL 293 >gi|289624627|ref|ZP_06457581.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289651147|ref|ZP_06482490.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. aesculi str. 2250] gi|298489345|ref|ZP_07007359.1| Tyrosine recombinase xerC [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156136|gb|EFH97242.1| Tyrosine recombinase xerC [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 299 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 38/296 (12%), Positives = 88/296 (29%), Gaps = 24/296 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR------SGVESRK 127 + Y ++ ++ ++ +++ I+ + + Sbjct: 5 LDAYCMHLRSERQVSPHTLEAYRRDLGKVLAYCQKAQLSSWNDLDIQHLRSFTARQHQQG 64 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + S + L+++R +K+ R+ +P + PK + + + Q Sbjct: 65 QSSRSLARMLSAVRGFYKYLNREGICQHDPANGLSPPKGERRLPKTLDTDRTAQLLDGGV 124 Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFM 242 E + + E L SGLR S+ + L K + + Sbjct: 125 EDDFLAHRDQAILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVGSKAR 184 Query: 243 KLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSA 294 + L + + F++ +++ + KA + G N H +R A Sbjct: 185 QALEIWLPLRALTNPQDDAVFVSQQGKRLGPRTIQVRLKAAGERELGQNLHPHMLRHSFA 244 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG---IKNSRRISSVVDSDD 347 + ++ + G + + YT D L R +DD Sbjct: 245 SHLLESSQDLRAVQELLGHADIKTTQIYTH-LDFQHLATVYDSAHPRAKRKGAADD 299 >gi|95928516|ref|ZP_01311263.1| phage integrase [Desulfuromonas acetoxidans DSM 684] gi|95135306|gb|EAT16958.1| phage integrase [Desulfuromonas acetoxidans DSM 684] Length = 397 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 50/354 (14%), Positives = 118/354 (33%), Gaps = 28/354 (7%) Query: 15 RTRHGKIIYYFRKG-HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT---- 69 ++G + F++ G+R+ + F + A+ + + I Sbjct: 43 VYKNGSRSWRFKQKFRGKRLFITIGPYPLF--SLQEAIDKTRHFKRLIADGIDPRQEQQP 100 Query: 70 ----TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVE 124 TL + + + + + ++ +II+ G I+ + + + Sbjct: 101 QSQLTLAQFVEQ--DFLPYARKHYKTFHNQQNMLDKRIIKTFGATPLADISKREVMLFHQ 158 Query: 125 SRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + ++ + L+ + +FK A+ + + NPC +++ K R +++ +F Sbjct: 159 QVCDETSGTTGNRHLSLLSSIFKLALEYDLLEKNPCRGIKKAKENRSRDRFLQEDEYTRF 218 Query: 183 KSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELP 238 A L G+R S+ + + + ++ K G V L Sbjct: 219 IQVLQTKLDQPSACAIFLLIALGMRKSELLSLRWEDVSLADRHLHLRDTKNGESRYVALN 278 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQ-----FSIWFKAKATKAGVN-KSAHGVRKF 292 LL ++ + ++ F ++ + H +R+ Sbjct: 279 SVSHGLLTKMKQKRKASNPWVFPSRTSSESGHLQDVRRTFATVCRESKITGLRIHDLRRS 338 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA--DRIRLGIKNSRRISSVVD 344 A+ +AG + G K++ + Y K A R SR+I V++ Sbjct: 339 HASHLLNAGVDISIVGKILGHKSLKSTQIYAKVATSSLARTSEIASRKIEEVMN 392 >gi|262273209|ref|ZP_06051025.1| tyrosine recombinase XerC [Grimontia hollisae CIP 101886] gi|262222787|gb|EEY74096.1| tyrosine recombinase XerC [Grimontia hollisae CIP 101886] Length = 305 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 38/286 (13%), Positives = 88/286 (30%), Gaps = 22/286 (7%) Query: 68 PTTLKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGV 123 P +++ ++ + L+ ++ ++ G ++ + +R Sbjct: 4 PASIEKPLARFFDYMIRERGLSRHTETNYRQQLAACAEFLVGAGVSQWQDVDAAWVRQIA 63 Query: 124 ESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 K S L+++R F + V +A NP V PK+ + +++ Sbjct: 64 AQAKREQLKAGSIALRLSALRSFFDFMVADGVMAANPAKGVSAPKQGRTLPKNLDVDEVN 123 Query: 181 QFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236 Q S ++ + R E + +GLR S+ V+ + ++ V Sbjct: 124 QLLSVDADDPLSVRDRAMMELMYGAGLRLSELIGLNVRDVAMRKGDLRVIGKGDKERIVP 183 Query: 237 LPDGFMKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKAGV--NKSA 286 + L + + ++++ K V + + Sbjct: 184 FTGMAKEWLINWLKVRNQLLKGPEDALFLSKLGKRISPRSVQKRMAEWGQKQAVSSHINP 243 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R AT ++ + G + + YT D L Sbjct: 244 HKLRHSFATHMLESSGDLRAVQELLGHADLSTTQVYTH-LDFQHLA 288 >gi|126663343|ref|ZP_01734341.1| integrase [Flavobacteria bacterium BAL38] gi|126625001|gb|EAZ95691.1| integrase [Flavobacteria bacterium BAL38] Length = 295 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 35/292 (11%), Positives = 100/292 (34%), Gaps = 30/292 (10%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESR---K 127 +Y + + + ++ ++ +IR+ + + Sbjct: 6 QAYQDYL--VKEKNYSPLTVRAYLDDIQSFQEYLLGQSISLEEVVYPNIRNWIVTLVEHN 63 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-----RKTEGIRPWTKEDMQQF 182 + +S + +++++ +K+ ++ + +++NP L + K + + + Sbjct: 64 ISTTSVNRKISALKSYYKFLLKVKQISVNPLLKHKSLKTAKKVQIPFSEKELLDVFSENE 123 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KTGTIITVELPDGF 241 + EG + R E +G+R ++ + + +I+ K + + D Sbjct: 124 YADDFEGIRNRFIIELFYTTGIRRAELINLNLNSVSEIQKTIRVIGKRNKERIIPVLDCT 183 Query: 242 M-------------KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHG 288 + +L++ + + N + + +F + K KS H Sbjct: 184 LNLYKKYKSLRNGLELISDNEMLILSKTGNKVSESFVYRLINDYFSTVSKK--EKKSPHV 241 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIKNSRR 338 +R AT + GA + + G ++ + YT A+ ++ + R Sbjct: 242 LRHSFATHLLNNGADLNSVKELLGHASLSSTQIYTHSSLAELKKVYQEAHPR 293 >gi|91216360|ref|ZP_01253327.1| putative tyrosine recombinase [Psychroflexus torquis ATCC 700755] gi|91185498|gb|EAS71874.1| putative tyrosine recombinase [Psychroflexus torquis ATCC 700755] Length = 298 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 41/280 (14%), Positives = 87/280 (31%), Gaps = 27/280 (9%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS-------G 122 + I ++ LA N+ ++ ++ +++ +T + + Sbjct: 3 WQEAIQDFTYYLKIERGLADNTVQNYRLDILKLANYISEYN-ATLTPELVDEETLQSFIY 61 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 S+ S + ++ ++ F + + ++Y NP +E P+ + +++ Q Sbjct: 62 SISKVINERSQARLISGLKSFFDYLIFEDYRKTNPLELIESPRLGRRLPDTLSTDEIDQL 121 Query: 183 KSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVEL 237 +G + + E L GLR S+ + L F K V + Sbjct: 122 VEAIDLSHLQGHRNKAIIETLYGCGLRVSELVELKISDLFFEKGFIKVIGKGNKERLVPI 181 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKM-----------NATQFSIWFKAKATKAGVNK-- 284 K +++ + K K A K + K Sbjct: 182 NTYTQKFISIYKEEFRIHLNQQSEFKDILFLNRRGAQLTRAMIFTIVKQLAKKINLQKNI 241 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 S H R AT + GA + G +++ E Y Sbjct: 242 SPHTFRHSFATHLLENGANLRVIQQMLGHESITTTEIYMH 281 >gi|313884807|ref|ZP_07818559.1| putative tyrosine recombinase XerC [Eremococcus coleocola ACS-139-V-Col8] gi|312619498|gb|EFR30935.1| putative tyrosine recombinase XerC [Eremococcus coleocola ACS-139-V-Col8] Length = 304 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 37/269 (13%), Positives = 81/269 (30%), Gaps = 24/269 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIR---SGVESRKHTPSSAIQFLT 138 + + +++ + G+ + I+ IR + + ++ + +S + L+ Sbjct: 16 KRYSPLTAQAYQRDLKEFAHFLASSGNDQVQSISYYDIRLFIAFLNEKRLSRTSIARKLS 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-----WSEGSQPR 193 ++R FK+ + + NP V +K + +++MQ + + Sbjct: 76 TLRSFFKFMQVETKLDQNPMDLVNYQVKKQRLPDFFYEDEMQALLKAAAESEHPLALRNQ 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVEL-------PDGFMKLL 245 E L SGLR S+ + + ++ V + ++K L Sbjct: 136 AILEVLYASGLRVSECRLLELGQVDFLAQVLRVHGKGNKERIVPMSDSASQTMQDYIKYL 195 Query: 246 AMTPIGKETFFINNDKQKM---NATQFSIWFKAKAT--KAGVNKSAHGVRKFSATISADA 300 K Q S ++ H +R AT + Sbjct: 196 RPKLDVTGQAKQVFLSNKGKTLTTRQVSQILNEIVAEGALNLSIHPHKLRHTFATHLLNN 255 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329 GA + G + + YT Sbjct: 256 GADLRSVQEMLGHADLSSTQIYTHITKDK 284 >gi|119503715|ref|ZP_01625797.1| site-specific tyrosine recombinase XerC [marine gamma proteobacterium HTCC2080] gi|119460223|gb|EAW41316.1| site-specific tyrosine recombinase XerC [marine gamma proteobacterium HTCC2080] Length = 304 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 39/280 (13%), Positives = 89/280 (31%), Gaps = 23/280 (8%) Query: 68 PTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSG---DFDYRKITTKHIRSGV 123 +L + ++ ++ + + + + +R+ V Sbjct: 2 TDSLAAACDVFLAYQRDIRQVSRHTLEGYGRDIRRFVSFCAVSNKQSATSVRESDVRNWV 61 Query: 124 ESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW---TKE 177 +P+S + L+S+R L+++ ++ NP L V+ PKR + + Sbjct: 62 SQLHRQGLSPTSIQRALSSVRSLYRFLSERDVTLGNPALGVQAPKRPRNLPKTLDADSVN 121 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-----I 232 + Q++ + + E L SGLR S+ A + L+ N I G Sbjct: 122 HLFQWQPETTLDFRDMAIAELLYSSGLRLSELVSANINDLEFNERMITVTGKGRKTRTLP 181 Query: 233 ITVELPDGFMKLL------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--K 284 + K L F++ +++ + + A + + Sbjct: 182 VGGPALTAVTKWLSLRPLGNEDVGPASPLFVSARGTRISPRSVQLRLQRMARFSALPGKL 241 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R A+ ++ + G + + YT Sbjct: 242 HPHMLRHSFASHMLESSGDLRAVQELLGHSDISTTQIYTH 281 >gi|261345243|ref|ZP_05972887.1| tyrosine recombinase XerC [Providencia rustigianii DSM 4541] gi|282566940|gb|EFB72475.1| tyrosine recombinase XerC [Providencia rustigianii DSM 4541] Length = 311 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 40/279 (14%), Positives = 91/279 (32%), Gaps = 22/279 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRK 127 + + + L+ + ++ + + + + +++ + Sbjct: 19 VEAFLRYLRVERRLSPVTITNYRRQLSAVCQILDELKVSQWQQLDIAIGRNVAAKSRRTG 78 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +S L+++R W V Q + NP ++ PK K + +++ Q + S Sbjct: 79 LQAASMALRLSALRSFCDWMVEQGELPANPVKTIHAPKGKKRLPKNMDVDEVSQLLNMDS 138 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243 + R E + +GLR S+ V+HL N+ K + + + Sbjct: 139 GDPLVVRDRTMLEVMYGAGLRLSELVGLDVKHLDLNSGEVWVMGKGSKERRIPMGKTAVN 198 Query: 244 LLAMTPIGKETFFI--------NNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293 L +E + ++++ F+ K GV + + H +R Sbjct: 199 WLKRWLEMRELYDPEDGAVFISTQSGKRISNRNVQKRFEQWGIKQGVNSHINPHKLRHSF 258 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 AT ++ + G + + YT D L Sbjct: 259 ATHILESSGNLRGVQELLGHANLSTTQIYTH-LDFQHLA 296 >gi|239500991|ref|ZP_04660301.1| site-specific tyrosine recombinase [Acinetobacter baumannii AB900] Length = 304 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 45/279 (16%), Positives = 90/279 (32%), Gaps = 27/279 (9%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRK--SGDFDYRKITTKHIRSGVESR---- 126 L+S + K + + ++ ++E + D R + +R + R Sbjct: 6 QLLSMWLKERKIQNQSEHTITAYERDVRSFLEFCELKKVDLRNVEASDLREYLAQRVEQD 65 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + + SS + LTS+R KWA + +Y+ INP + ++ E + Q Sbjct: 66 QLSSSSMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILDQP 125 Query: 187 SEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVEL 237 + + E L SGLR ++ ++ + N ++ V Sbjct: 126 MPEKPVDQQLWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKGNKTRIVPF 185 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAGV--NKS 285 + L + + D+ Q K +A +AGV + Sbjct: 186 GKKAKESLLNWLKIYNIWKGHFDQNASVFISQRGSALTPRQIEKRVKLQAQRAGVNVDLH 245 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R A+ + + G + + YT Sbjct: 246 PHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTH 284 >gi|213158313|ref|YP_002320364.1| tyrosine recombinase XerC [Acinetobacter baumannii AB0057] gi|215482572|ref|YP_002324764.1| Tyrosine recombinase xerC [Acinetobacter baumannii AB307-0294] gi|294837791|ref|ZP_06782474.1| site-specific tyrosine recombinase [Acinetobacter sp. 6013113] gi|301594795|ref|ZP_07239803.1| site-specific tyrosine recombinase [Acinetobacter baumannii AB059] gi|213057473|gb|ACJ42375.1| tyrosine recombinase XerC [Acinetobacter baumannii AB0057] gi|213986400|gb|ACJ56699.1| Tyrosine recombinase xerC [Acinetobacter baumannii AB307-0294] Length = 304 Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 45/279 (16%), Positives = 90/279 (32%), Gaps = 27/279 (9%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRK--SGDFDYRKITTKHIRSGVESR---- 126 L+S + K + + ++ ++E + D R + +R + R Sbjct: 6 QLLSMWLKERKIQNQSEHTITAYERDVRSFLEFCELKKVDLRNVEASDLREYLAQRVEQD 65 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + + SS + LTS+R KWA + +Y+ INP + ++ E + Q Sbjct: 66 QLSSSSMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILDQP 125 Query: 187 SEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVEL 237 + + E L SGLR ++ ++ + N ++ V Sbjct: 126 MPEKPIDQQLWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKGNKTRIVPF 185 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAGV--NKS 285 + L + + D+ Q K +A +AGV + Sbjct: 186 GKKAKESLLNWLKIYNIWKGHFDQNASVFISQRGGALTPRQIEKRVKLQAQRAGVNVDLH 245 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R A+ + + G + + YT Sbjct: 246 PHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTH 284 >gi|224543273|ref|ZP_03683812.1| hypothetical protein CATMIT_02473 [Catenibacterium mitsuokai DSM 15897] gi|224523806|gb|EEF92911.1| hypothetical protein CATMIT_02473 [Catenibacterium mitsuokai DSM 15897] Length = 297 Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 38/266 (14%), Positives = 87/266 (32%), Gaps = 21/266 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMR 141 L+ N+ + D+D +K HI + K + +S + + S+R Sbjct: 17 RGLSENTVQGYIRDIKAFYEYI-DYDIKKFDLSHIDAYFCELKDDGYKVTSIRRKIVSLR 75 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT----KEDMQQFKSFWSEGSQPRLAFE 197 ++ R + + PK + + + + ++ G + + Sbjct: 76 QYNEFLSRTRGMQDIMTQ-YDLPKTDKKLPKVLSLEEIIKVIKSIDDSNPAGKRNKAMML 134 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKLLAMTPIG----- 251 L+ +G+R S+ + + +++ ++ K + L + + Sbjct: 135 LLINTGMRISELVHLEINDINHSVSNVSVVGKGNKERLIPLDEETCSYVYSYMQNDRSFF 194 Query: 252 ----KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305 + F+ ND ++M F + AGV + + H +R AT + Sbjct: 195 NKKNNQWLFMMNDGRRMTRENFYNILQKLVIGAGVRDHFTPHMLRHTFATTLLENHCDLR 254 Query: 306 ELMATYGWKTVDQAETYTKGADRIRL 331 + G + + YT R L Sbjct: 255 SIQVMLGHQDISTTTIYTHVTHRQIL 280 >gi|254486283|ref|ZP_05099488.1| tyrosine recombinase XerC [Roseobacter sp. GAI101] gi|214043152|gb|EEB83790.1| tyrosine recombinase XerC [Roseobacter sp. GAI101] Length = 314 Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 41/290 (14%), Positives = 81/290 (27%), Gaps = 29/290 (10%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRK--------SGDFDYRKITTKHIRSG 122 + + + A N+ +++ + G IT +RS Sbjct: 15 RDAMQTWLDHQRALKGAAENTITAYQGDVTDFLAFMTLHKGDSIGLGALANITISDMRSW 74 Query: 123 VESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW----- 174 + + P S + L++++ ++W +E LS PK + RP Sbjct: 75 MARTRGPDVGPRSLARKLSAVKAFYRWLAEREGFEPTAVLSTRSPKFPKKLPRPLAVDAA 134 Query: 175 --TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 + ++ ++ L GLR S++ K G Sbjct: 135 KAMIDCVELQSPRPWVAARDVAVLTLLWGCGLRISEALGLKGADAPLPDVLRIVGKGGKE 194 Query: 233 ITVELPDGFMKLLAMTPIGKETFFIN-------NDKQKMNATQFSIWFKAKATKAGVNKS 285 V + + + + A + + G+ + Sbjct: 195 RVVPVLPAARDAVDAYLRACPHPQEHGTALFKAVRGGPLAARAIAQVMADARMQLGLPAT 254 Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 H +R AT DAG + G ++ + YT D RL Sbjct: 255 ATPHAMRHSFATHLLDAGGDLRAIQELLGHASLSTTQAYT-AVDTARLMD 303 >gi|224282680|ref|ZP_03646002.1| Integrase [Bifidobacterium bifidum NCIMB 41171] gi|310287139|ref|YP_003938397.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium bifidum S17] gi|313139838|ref|ZP_07802031.1| tyrosine recombinase xerD [Bifidobacterium bifidum NCIMB 41171] gi|309251075|gb|ADO52823.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium bifidum S17] gi|313132348|gb|EFR49965.1| tyrosine recombinase xerD [Bifidobacterium bifidum NCIMB 41171] Length = 322 Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 47/299 (15%), Positives = 94/299 (31%), Gaps = 46/299 (15%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRKH 128 L+ ++ LA + ++ES + + G D I I V Sbjct: 8 LLDQFIAHISVERGLARATVRAYESDLRRYLSWLAHTRGITDPDAIGKADIEEYVAQLDS 67 Query: 129 TPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 SA + L S+ ++A+ Q V+ + +V+ PK T +++ + Sbjct: 68 DGDSARSKARRLASIHEFHRFALAQHAVSDDVSATVKAPKSAQMLPDVLTIDEVSRLLDA 127 Query: 186 WSEG--------------------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-- 223 + + R EF+ +G R S++ + + + Sbjct: 128 IPDPHGTDAARGRAGIGALPDAVLLRDRALLEFMYATGCRVSEAVGMNLDDIDIDDAHVA 187 Query: 224 IKTQKTGTIITVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQF 269 T K V L + + L + F+N ++++ Sbjct: 188 RLTGKGSKQRLVPLGEYACRALRRYLAEGRGTLEGRAKGTPDRRAVFLNKRGRRLSRQSV 247 Query: 270 SIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 K +AG+++ H +R AT GA + G +V + YT + Sbjct: 248 WEVIKLAGERAGIDRPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVS 306 >gi|53717850|ref|YP_106836.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei K96243] gi|76808989|ref|YP_331806.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei 1710b] gi|126451479|ref|YP_001064490.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei 1106a] gi|134283593|ref|ZP_01770292.1| tyrosine recombinase XerC [Burkholderia pseudomallei 305] gi|167736614|ref|ZP_02409388.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei 14] gi|167813712|ref|ZP_02445392.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei 91] gi|167822227|ref|ZP_02453698.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei 9] gi|167843822|ref|ZP_02469330.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei B7210] gi|167909037|ref|ZP_02496128.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei 112] gi|226199796|ref|ZP_03795347.1| tyrosine recombinase XerC [Burkholderia pseudomallei Pakistan 9] gi|242316661|ref|ZP_04815677.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1106b] gi|254182208|ref|ZP_04888805.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1655] gi|254188137|ref|ZP_04894649.1| tyrosine recombinase XerC [Burkholderia pseudomallei Pasteur 52237] gi|254196193|ref|ZP_04902617.1| tyrosine recombinase XerC [Burkholderia pseudomallei S13] gi|254261174|ref|ZP_04952228.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1710a] gi|254295751|ref|ZP_04963208.1| tyrosine recombinase XerC [Burkholderia pseudomallei 406e] gi|52208264|emb|CAH34195.1| integrase/recombinase [Burkholderia pseudomallei K96243] gi|76578442|gb|ABA47917.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1710b] gi|126225121|gb|ABN88661.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1106a] gi|134245002|gb|EBA45097.1| tyrosine recombinase XerC [Burkholderia pseudomallei 305] gi|157806287|gb|EDO83457.1| tyrosine recombinase XerC [Burkholderia pseudomallei 406e] gi|157935817|gb|EDO91487.1| tyrosine recombinase XerC [Burkholderia pseudomallei Pasteur 52237] gi|169652936|gb|EDS85629.1| tyrosine recombinase XerC [Burkholderia pseudomallei S13] gi|184212746|gb|EDU09789.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1655] gi|225928147|gb|EEH24183.1| tyrosine recombinase XerC [Burkholderia pseudomallei Pakistan 9] gi|242139900|gb|EES26302.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1106b] gi|254219863|gb|EET09247.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1710a] Length = 310 Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 40/288 (13%), Positives = 91/288 (31%), Gaps = 31/288 (10%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTP 130 I +Y + L+ ++ ++ D++ + + +T +R + + + Sbjct: 10 IVDYLSNLRHVRKLSDHTLRAYAHELDELKKLANGRPLDSLTAVDMRSAVARAHAGGLSA 69 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 S L++ R ++W + + NP +V PKR + + +D + G+ Sbjct: 70 RSISHRLSAWRAFYRWFSQHVEMNANPVAAVRAPKRAKTLPKALSVDDTAALMDAPTAGT 129 Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------GTIIT 234 + E SGLR ++ ++++++ + Sbjct: 130 AESLRDHAILELFYSSGLRLAELIGLDIEYVKDGAYRSAGWLDLAEAEVTVRGKGDKERK 189 Query: 235 VELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--K 284 V + + L F++ +M+ K A AG+ Sbjct: 190 VPVGRKALDALHAWLAVRGEFVKHDPRPLFLSVRGNRMSPGVVRERVKRAALAAGIPANV 249 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R AT + + G ++ + YT D L Sbjct: 250 HPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYT-SLDFQHLA 296 >gi|311030138|ref|ZP_07708228.1| site-specific tyrosine recombinase XerC [Bacillus sp. m3-13] Length = 302 Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 40/276 (14%), Positives = 91/276 (32%), Gaps = 29/276 (10%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT------TKHIRSGVESRKHTP 130 EY + + + + + ++ + + I + + + +K+ Sbjct: 13 EYLQIE--KNYSKYTIVFYQKDIEDFFDFMKEEAISSINEVTHTEARMYLTRLHQKKYAR 70 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----W 186 S + +S+R +K+ +R+E V NP SV PK++ + E++ + + Sbjct: 71 KSVARKTSSLRSFYKFLLREEKVEQNPFTSVSLPKQEKRLPQFLYSEELDKLFAVSDLET 130 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKLL 245 G + + E L +G+R S+ C + + + +I T K + + Sbjct: 131 PLGQRNQAILELLYATGIRISECCHIQIHDIDFQVGTILVTGKGNKQRYIPFGSFAQDAI 190 Query: 246 AMTPIGKETFFINNDKQKM--------------NATQFSIWFKAKATKAG--VNKSAHGV 289 + + K + +A ++ S H + Sbjct: 191 KIYLEDGRKSLLEKQKTPNSTKHLFLNFRGGALTPRGVRLILNDMVQQACSTLHISPHML 250 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 R AT + GA + G ++ + YT Sbjct: 251 RHTFATHMLNEGADLRVVQELLGHASLSSTQIYTHV 286 >gi|163848038|ref|YP_001636082.1| integrase family protein [Chloroflexus aurantiacus J-10-fl] gi|222525926|ref|YP_002570397.1| integrase family protein [Chloroflexus sp. Y-400-fl] gi|163669327|gb|ABY35693.1| integrase family protein [Chloroflexus aurantiacus J-10-fl] gi|222449805|gb|ACM54071.1| integrase family protein [Chloroflexus sp. Y-400-fl] Length = 286 Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 40/282 (14%), Positives = 101/282 (35%), Gaps = 26/282 (9%) Query: 73 WLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDF------DYRKITTKHIRSGVES 125 ++++ A ++ N+ I++ + DQ+ + D T ++ Sbjct: 3 QYVAQFLAYIADERKMSANTTIAYRTDLDQLCAFLHERGIEHWSDVDSETMMAFVINLKE 62 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 +++ S+ + L +++ F + + + +P ++ P+ R ++ + + Sbjct: 63 KRYANSTMARRLAAIKSFFSFLKERNVIHHDPTDQLDAPRVDRFPPRAISQHQVDELLEV 122 Query: 186 W-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPD 239 EG + + E L +G+R S+ V + + +++ + T+ L D Sbjct: 123 PLQNGTPEGIRDKAMLEVLYATGMRVSELVALNVDDVAFDHRTVRCRGRQGRERTIPLSD 182 Query: 240 GFMKLLAMTPIGKETF------------FINNDKQKMNATQFSIWFKAKATKAGV-NKSA 286 + L F+N+ +++ F + K A + G+ + + Sbjct: 183 PALTALEEYLDIARPQLARQAPDDPEALFLNHRGKRLTRQGFWLILKTYAEQVGMHDLTP 242 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 H +R A G EL G ++ + Y A+ Sbjct: 243 HMLRHSFAAHQLRNGVDLRELQERLGHASIATTQMYAHLAEE 284 >gi|262067772|ref|ZP_06027384.1| integrase/recombinase, phage integrase family [Fusobacterium periodonticum ATCC 33693] gi|291378498|gb|EFE86016.1| integrase/recombinase, phage integrase family [Fusobacterium periodonticum ATCC 33693] Length = 329 Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 40/265 (15%), Positives = 97/265 (36%), Gaps = 16/265 (6%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---- 128 LI ++ +L+ + + + + ++ +T+ + S + S+ + Sbjct: 50 ELIKQFVIQKKVQNLSDRTIKYYVLTLELFNSFLRNKPFQTVTSNDVISFLGSKMYKDKV 109 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 T ++A ++ F + +++ NP V++ E + ++ ++ + + ++ Sbjct: 110 TSTTANNLRRNLSSFFTFLQEFDFILKNPMARVKKINEVREKKKAFSATELAKIRKVFT- 168 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAM 247 + R FE LL+SG+R C + + + +K TV + L Sbjct: 169 NKRDRAIFELLLHSGIRVGGLCGLKFDDINFSDKTLTVFEKGRKYRTVYFNEEAEFYLKE 228 Query: 248 TPIGKETFFINNDKQKMN---------ATQFSIWFKAKATKAGVN-KSAHGVRKFSATIS 297 ++ ++ + I + +AGVN H R+ AT + Sbjct: 229 YLEERQHLDTKEKHIFVSLLKPYKKLQISGVEIMIRQAGKEAGVNNVHPHRFRRTFATTA 288 Query: 298 ADAGATAHELMATYGWKTVDQAETY 322 G + ++ G K +D + Y Sbjct: 289 WKKGMSIIDIKNLLGHKKLDTTQIY 313 >gi|229515837|ref|ZP_04405295.1| tyrosine recombinase XerC [Vibrio cholerae TMA 21] gi|229347100|gb|EEO12061.1| tyrosine recombinase XerC [Vibrio cholerae TMA 21] Length = 311 Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 40/303 (13%), Positives = 99/303 (32%), Gaps = 24/303 (7%) Query: 68 PTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRS-- 121 P L + + H L+ ++ +++ + + + G + ++ + +R Sbjct: 10 PDALAQPLERFYAYLHTEKGLSQYTQRNYKQQLETMTQYLVQVGLTHWSQLDSAWVRQLV 69 Query: 122 -GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + + SS L+S+R + + + + NP V P+++ + ++M Sbjct: 70 MQGKRQGMKASSIATRLSSLRSFLDFLILRGELQANPAKGVSAPRKQRTLPKNLDVDEMA 129 Query: 181 QFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236 Q + + R E + +GLR ++ V+ + + I+ V Sbjct: 130 QLLEVTDDDPLSIRDRAIMELMYGAGLRLAELVSIDVKDVNLSEGEIRVIGKGNKERKVW 189 Query: 237 LPDGFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 + + + F++ +++ K V + S Sbjct: 190 FAGQAQEWVGKWLKLRSQLADSAETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISP 249 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG--IKNSRRISSVVD 344 H +R AT ++ + G + + + YT D L + + + Sbjct: 250 HKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTH-LDFQHLAQVYDQAHPRARKKN 308 Query: 345 SDD 347 DD Sbjct: 309 KDD 311 >gi|209965952|ref|YP_002298867.1| tyrosine recombinase XerD [Rhodospirillum centenum SW] gi|209959418|gb|ACJ00055.1| tyrosine recombinase XerD [Rhodospirillum centenum SW] Length = 330 Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 52/307 (16%), Positives = 103/307 (33%), Gaps = 36/307 (11%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRKH- 128 + + A N+R ++ + G + +T +R+ +E Sbjct: 23 VDAFLDMLVAERGAAANTRDAYARDLRDVAAFLAARRGGTALDRASTDDLRAYLEHLHRD 82 Query: 129 ------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED---- 178 + + L+++R +++ V + A +P ++ PK + T+ D Sbjct: 83 TGKTPSAGRTVARRLSALRQYYRFLVSEGLRAEDPAAVLDGPKPGRSLPKILTEADVALL 142 Query: 179 -MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVE 236 + EG + E L +GLR S+ + L + + + K G V Sbjct: 143 LEGAARRGGPEGRRLTALLELLYATGLRVSELVGLPLAALTRDGRALVVRGKGGKERMVP 202 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKM--------------NATQFSIWFKAKATKAGV 282 L + LA + F + + + +F K A + G+ Sbjct: 203 LSQPAKEALAACLPDRPYFMVPGREARQQGLLFPSRSAAGVLTRQRFGQLMKELALEVGL 262 Query: 283 N---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSRR 338 + S H +R AT D GA + G + + YT A DR+R ++ Sbjct: 263 DPGKVSPHVLRHCFATHLLDHGADLRSVQKMLGHADIGTTQIYTHVAGDRLRRTVETHHP 322 Query: 339 ISSVVDS 345 ++ S Sbjct: 323 LAKRRGS 329 >gi|219669469|ref|YP_002459904.1| tyrosine recombinase XerD [Desulfitobacterium hafniense DCB-2] gi|219539729|gb|ACL21468.1| tyrosine recombinase XerD [Desulfitobacterium hafniense DCB-2] Length = 322 Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 39/306 (12%), Positives = 87/306 (28%), Gaps = 46/306 (15%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKI-----TTKHIRSGVES 125 + + +Y + L+ N+R S+E + I ++ Sbjct: 6 EAWLKKYLSYLNVERGLSPNTRNSYERDLRKFTAFLQQRGKNIIACEGNDLFLFLLQEKN 65 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + + + ++L ++R F + + +E +P + PK + ++ + + Sbjct: 66 QGRSARTLARYLATLRGFFAFLLGEEMREDDPTEYLSTPKLEQHLPHVLSEGSISKLMGE 125 Query: 186 WSEGS---------------------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218 + + E L GLR S+ V + Sbjct: 126 GGDRDKEGPKPGKSSKKAGDSDSEGKDKGLLMRNMAMIEVLYGCGLRVSELVGLKVSDII 185 Query: 219 NNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFINNDKQ----------KMNAT 267 +++ + V + + +++L K + Sbjct: 186 FETRTLRCRGKGNKERIVPIGEYALEVLQNYLEHDRERLRGKHKTEVLFLNSRGTALTRQ 245 Query: 268 QFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 K A GV ++ H R AT D GA + G + + YT Sbjct: 246 GIWDILKKWAQTHGVQENIYPHKFRHSFATHLLDHGADLRSVQEMLGHADIATTQIYTHL 305 Query: 326 ADRIRL 331 + + L Sbjct: 306 SRQRLL 311 >gi|313676041|ref|YP_004054037.1| integrase family protein [Marivirga tractuosa DSM 4126] gi|312942739|gb|ADR21929.1| integrase family protein [Marivirga tractuosa DSM 4126] Length = 372 Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 41/261 (15%), Positives = 80/261 (30%), Gaps = 15/261 (5%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS--- 132 Y + A+ + ++ + FD+ R I I++ ++ S Sbjct: 103 EAYFQKLELKRYALKTAENYTACFDRFKRHFPTRKLMSIDETDIKNYLKGLAQRKYSDSF 162 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 + S++ + N +ERP + +KE++ + + Sbjct: 163 VNLSINSIK----FYYEVVEGMPNRFYDIERPMKTERLPEILSKEEVIAMINKTF-NIKH 217 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-----TGTIITVELPDGFMKLLAM 247 + L SGLR + + + +I+ ++ I E ++L Sbjct: 218 QCIISILYSSGLRRGELLNLKLSDIDGKRMTIRVEQGKGKKDRYSILSEKLLLKLRLYYK 277 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAH 305 F Q + + A A +NK H +R AT +AG Sbjct: 278 QYKPTHYLFEGKKGQPYSGSSVRQIVAKAAKNANINKPVRPHMLRHSFATHLLEAGTDLR 337 Query: 306 ELMATYGWKTVDQAETYTKGA 326 + G + E YT A Sbjct: 338 HIQLLLGHNSTKTTEIYTHVA 358 >gi|59800504|ref|YP_207216.1| putative site-specific recombinase [Neisseria gonorrhoeae FA 1090] gi|194097632|ref|YP_002000668.1| putative site-specific recombinase [Neisseria gonorrhoeae NCCP11945] gi|239998167|ref|ZP_04718091.1| putative site-specific recombinase [Neisseria gonorrhoeae 35/02] gi|240013349|ref|ZP_04720262.1| putative site-specific recombinase [Neisseria gonorrhoeae DGI18] gi|240015794|ref|ZP_04722334.1| putative site-specific recombinase [Neisseria gonorrhoeae FA6140] gi|240079931|ref|ZP_04724474.1| putative site-specific recombinase [Neisseria gonorrhoeae FA19] gi|240112137|ref|ZP_04726627.1| putative site-specific recombinase [Neisseria gonorrhoeae MS11] gi|240114883|ref|ZP_04728945.1| putative site-specific recombinase [Neisseria gonorrhoeae PID18] gi|240117087|ref|ZP_04731149.1| putative site-specific recombinase [Neisseria gonorrhoeae PID1] gi|240120422|ref|ZP_04733384.1| putative site-specific recombinase [Neisseria gonorrhoeae PID24-1] gi|240122724|ref|ZP_04735680.1| putative site-specific recombinase [Neisseria gonorrhoeae PID332] gi|240124914|ref|ZP_04737800.1| putative site-specific recombinase [Neisseria gonorrhoeae SK-92-679] gi|254492944|ref|ZP_05106115.1| tyrosine recombinase xerC [Neisseria gonorrhoeae 1291] gi|260441302|ref|ZP_05795118.1| putative site-specific recombinase [Neisseria gonorrhoeae DGI2] gi|268594018|ref|ZP_06128185.1| tyrosine recombinase xerC [Neisseria gonorrhoeae 35/02] gi|268596071|ref|ZP_06130238.1| tyrosine recombinase xerC [Neisseria gonorrhoeae FA19] gi|268598196|ref|ZP_06132363.1| tyrosine recombinase xerC [Neisseria gonorrhoeae MS11] gi|268600541|ref|ZP_06134708.1| tyrosine recombinase xerC [Neisseria gonorrhoeae PID18] gi|268602774|ref|ZP_06136941.1| tyrosine recombinase xerC [Neisseria gonorrhoeae PID1] gi|268681323|ref|ZP_06148185.1| tyrosine recombinase xerC [Neisseria gonorrhoeae PID332] gi|268683494|ref|ZP_06150356.1| tyrosine recombinase xerC [Neisseria gonorrhoeae SK-92-679] gi|291044658|ref|ZP_06570367.1| tyrosine recombinase xerC [Neisseria gonorrhoeae DGI2] gi|293397766|ref|ZP_06641972.1| tyrosine recombinase XerC [Neisseria gonorrhoeae F62] gi|75356483|sp|Q5FAI3|XERC_NEIG1 RecName: Full=Tyrosine recombinase xerC gi|254799349|sp|B4RNW5|XERC_NEIG2 RecName: Full=Tyrosine recombinase xerC gi|59717399|gb|AAW88804.1| putative site-specific recombinase [Neisseria gonorrhoeae FA 1090] gi|193932922|gb|ACF28746.1| putative site-specific recombinase [Neisseria gonorrhoeae NCCP11945] gi|226511984|gb|EEH61329.1| tyrosine recombinase xerC [Neisseria gonorrhoeae 1291] gi|268547407|gb|EEZ42825.1| tyrosine recombinase xerC [Neisseria gonorrhoeae 35/02] gi|268549859|gb|EEZ44878.1| tyrosine recombinase xerC [Neisseria gonorrhoeae FA19] gi|268582327|gb|EEZ47003.1| tyrosine recombinase xerC [Neisseria gonorrhoeae MS11] gi|268584672|gb|EEZ49348.1| tyrosine recombinase xerC [Neisseria gonorrhoeae PID18] gi|268586905|gb|EEZ51581.1| tyrosine recombinase xerC [Neisseria gonorrhoeae PID1] gi|268621607|gb|EEZ54007.1| tyrosine recombinase xerC [Neisseria gonorrhoeae PID332] gi|268623778|gb|EEZ56178.1| tyrosine recombinase xerC [Neisseria gonorrhoeae SK-92-679] gi|291011552|gb|EFE03548.1| tyrosine recombinase xerC [Neisseria gonorrhoeae DGI2] gi|291611712|gb|EFF40781.1| tyrosine recombinase XerC [Neisseria gonorrhoeae F62] gi|317163457|gb|ADV06998.1| putative site-specific recombinase [Neisseria gonorrhoeae TCDC-NG08107] Length = 305 Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 38/293 (12%), Positives = 95/293 (32%), Gaps = 30/293 (10%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGV 123 Y ++ + ++ ++ +++ + ++ + + + Sbjct: 6 FAAYFDAYLENIVREGKSEHTVAAYRRDLEELFALLAQMPSEDAGGVPQDLSRRDFTAAL 65 Query: 124 ESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + + L++ R W V++ + +P ++ PK+ + +E + Sbjct: 66 RRLSQRGLDGRTLARKLSAWRQYCAWLVKRGLMRADPTADIKPPKQPERVPKALPQEWLN 125 Query: 181 QFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIIT 234 + +G + FE + SGLR S+ + + + T K Sbjct: 126 RMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQ 185 Query: 235 VELPDGFMKLLAMTPIGKETF------FINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 V L ++ L ++T F + +++ Q ++ A + G + S Sbjct: 186 VPLTGKSVEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLESWAAQYGDGRHVSP 245 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 H +R A A + G ++ + YTK L + R+ Sbjct: 246 HMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK------LDFDHIARL 292 >gi|300113125|ref|YP_003759700.1| tyrosine recombinase XerC [Nitrosococcus watsonii C-113] gi|299539062|gb|ADJ27379.1| tyrosine recombinase XerC [Nitrosococcus watsonii C-113] Length = 300 Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 36/280 (12%), Positives = 92/280 (32%), Gaps = 22/280 (7%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSGVESRKH- 128 I ++ + L+ + +S+ +++ G +++ + + +R+ V + Sbjct: 8 WIQKFLLHLQYERGLSPQTVVSYRRDLAKVMAFCGRNGIGNWQALDAQKVRALVAAYHQT 67 Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + S + L+++R + + R+ V NP + P+ K + Q + Sbjct: 68 GLSGRSIQRLLSALRSFYVYLQRENIVDHNPAQGISAPRGKRALPPTLDVDQAAQLLNTK 127 Query: 187 SEG---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM 242 G + + E SGLR ++ + L + ++ G V L Sbjct: 128 PCGDLLLRDQAILELFYSSGLRLAELVGLNLSALDLDTALVRVVGKGAKTREVPLGRRAK 187 Query: 243 KLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292 L + + + + ++++ + + G + H +R Sbjct: 188 AALLAWLPIRAGWISQSQEAVFVTRRGRRLSPRAVQKRLRLWGLRQGFDVAIHPHRLRHA 247 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 A+ ++ + G + + YT D L Sbjct: 248 FASHLLESSGDLRAVQELLGHADISTTQIYTH-LDFQHLA 286 >gi|261823389|ref|YP_003261495.1| site-specific tyrosine recombinase XerC [Pectobacterium wasabiae WPP163] gi|261607402|gb|ACX89888.1| tyrosine recombinase XerC [Pectobacterium wasabiae WPP163] Length = 311 Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 46/278 (16%), Positives = 91/278 (32%), Gaps = 21/278 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESRKHTP 130 + + + L+ + S+ I+ +G D+RK+ +RS V K Sbjct: 20 VDAFLRYLKAERQLSPLTLTSYSRQLSAVITILSAAGVVDWRKLDASGVRSVVSRSKRDG 79 Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +S L+++R W V + + NP V P+ + ++M + Sbjct: 80 LHSASLALRLSALRSFLDWMVSRGVLTANPAKGVSTPRAGRPLPKNMDVDEMNRLLEIDL 139 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243 + + R E + +GLR ++ QH+ + K + + + Sbjct: 140 DDPLAVRDRTMLEVMYGAGLRLAELVGMDYQHIDLASGEVWVVGKGSKERKLPIGKTAVT 199 Query: 244 LLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 L FI+N ++++ F K GV + H +R A Sbjct: 200 WLERWLALRELFGPQDNAVFISNQGRRISMRNVQKRFAEWGVKQGVNSHVHPHKLRHSFA 259 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 T ++ + G + + YT D L Sbjct: 260 THMLESSGDLRAVQELLGHANLTTTQIYTH-LDFQHLA 296 >gi|171742548|ref|ZP_02918355.1| hypothetical protein BIFDEN_01661 [Bifidobacterium dentium ATCC 27678] gi|283456366|ref|YP_003360930.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium dentium Bd1] gi|171278162|gb|EDT45823.1| hypothetical protein BIFDEN_01661 [Bifidobacterium dentium ATCC 27678] gi|283103000|gb|ADB10106.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium dentium Bd1] Length = 318 Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 41/298 (13%), Positives = 94/298 (31%), Gaps = 43/298 (14%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRK 127 + L+ ++ L+ + ++ S + + G D +TT+H+ V S Sbjct: 5 ERLVRQFLAHIDVERGLSKATVCAYGSDLHKYVSWLHEQGIHDLDDVTTRHVEEYVASLD 64 Query: 128 HTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + SA + L S+ ++A+ + V + V+ PK + + +++ + Sbjct: 65 DSGESARSKARRLASIHAFHRFALSEHVVHDDVAAQVKAPKGASTLPDVLSVDEVMRLMD 124 Query: 185 FWSEG-------------------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225 + + EF+ +G R S++C + + + + Sbjct: 125 SIPLSRHHDGKQGHGDAAADDPVMLRDKALLEFMYATGSRVSEACGVDLDDIDLDDKVAR 184 Query: 226 -TQKTGTIITVELPDGFMKLLAMTPIG--------------KETFFINNDKQKMNATQFS 270 K V + + L F+N ++++ Sbjct: 185 LMGKGSKQRLVPVGSFACEALRRYLRFGRPVLQSKSKGAAEHRAVFLNKRGKRLSRQSVW 244 Query: 271 IWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 + +A + H +R AT GA + G +V + YT + Sbjct: 245 EIIRTAGERAHITKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVS 302 >gi|260431124|ref|ZP_05785095.1| site-specific tyrosine recombinase XerC [Silicibacter lacuscaerulensis ITI-1157] gi|260414952|gb|EEX08211.1| site-specific tyrosine recombinase XerC [Silicibacter lacuscaerulensis ITI-1157] Length = 306 Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 36/289 (12%), Positives = 81/289 (28%), Gaps = 29/289 (10%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSG 122 + + + +S + N+ ++ + G +I+ +R+ Sbjct: 9 RDALQLWLESLSALAGRSDNTTNAYRRDVTDFLAFMTLHHNERQGLAALERISVTDMRAW 68 Query: 123 VESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + ++ + S + L++++ ++W +E LS PK + RP ++ Sbjct: 69 MAQQRDSGVGARSLARKLSAVKSFYRWLAEREGFEPTAVLSTRAPKFTKKLPRPLAEDAA 128 Query: 180 QQFKSF-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 + ++ L GLR S++ K Sbjct: 129 RAMIETVELQSSSDWVAARDVAVVTLLYGCGLRISEALSLTGADAPLPATLRIVGKGDKE 188 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKM-------NATQFSIWFKAKATKAGVNKS 285 V + + + + N + G+ + Sbjct: 189 RIVPVIPAARQAVDRYLELCPHPQGATEPLFRGVRGKALNPKAIQSVMAKARMQLGLPAT 248 Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R AT AG + G ++ + YT D RL Sbjct: 249 ATPHAMRHSFATHLLSAGGDLRAIQELLGHASLSTTQAYT-AVDTARLM 296 >gi|311064002|ref|YP_003970727.1| integrase/recombinase [Bifidobacterium bifidum PRL2010] gi|310866321|gb|ADP35690.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium bifidum PRL2010] Length = 322 Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 47/299 (15%), Positives = 94/299 (31%), Gaps = 46/299 (15%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRKH 128 L+ ++ LA + ++ES + + G D I I V Sbjct: 8 LLDQFIAHISVERGLARATVRAYESDLRRYLSWLAHTRGITDPDAIGKADIEEYVAQLDS 67 Query: 129 TPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 SA + L S+ ++A+ Q V+ + +V+ PK T +++ + Sbjct: 68 DGDSARSKARRLASIHEFHRFALAQHAVSDDVSATVKAPKSAQMLPDVLTIDEVSRLLDA 127 Query: 186 WSEG--------------------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-- 223 + + R EF+ +G R S++ + + + Sbjct: 128 IPDPHGTDAARGRAGIGALPDAVLLRDRALLEFMYATGCRVSEAVGMNLDDIDIDDAHVA 187 Query: 224 IKTQKTGTIITVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQF 269 T K V L + + L + F+N ++++ Sbjct: 188 RLTGKGSKQRLVPLGEYACRALRRYLAEGRGTLEGRAKGTPERRAVFLNKRGRRLSRQSV 247 Query: 270 SIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 K +AG+++ H +R AT GA + G +V + YT + Sbjct: 248 WEVIKLAGERAGIDRPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVS 306 >gi|119776379|ref|YP_929119.1| integrase/recombinase XerC [Shewanella amazonensis SB2B] gi|171704602|sp|A1SAP3|XERC_SHEAM RecName: Full=Tyrosine recombinase xerC gi|119768879|gb|ABM01450.1| integrase/recombinase XerC [Shewanella amazonensis SB2B] Length = 296 Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 27/274 (9%), Positives = 84/274 (30%), Gaps = 19/274 (6%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPS 131 + Y + L+ + ++ ++ G +++++ + + + +P Sbjct: 11 FTRYLATE--RQLSPMTVRNYRFELERADTLLGQRSWQQLSRQDLSGLMARLHRQGLSPR 68 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-- 189 S ++++ ++ +++ + NP ++ PK+ + + + E Sbjct: 69 SLSLTASALKQFGQFLLKEGLIDTNPAATLSAPKQSKTLPKNLDPDSVNHLLDIPPEDGL 128 Query: 190 -SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAM 247 + + E GLR ++ V+ L ++ + + + + Sbjct: 129 ALRDKAIMELFYSCGLRLAELAALDVKDLDRESREVRVIGKGSKERILPVGSVALAAIGD 188 Query: 248 TPIGKETFFINN-------DKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISA 298 + + +++ + A G+ H +R AT Sbjct: 189 WLKVRNQMPCQDDALFVSSRGSRLSHRSIQARMEKWAQIQGLSVGVHPHKLRHSFATHML 248 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 ++ + G + + YT D L Sbjct: 249 ESSGDLRAVQELLGHANLATTQIYT-SLDFQHLA 281 >gi|332184625|gb|AEE26879.1| site-specific recombinase [Francisella cf. novicida 3523] Length = 292 Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 33/266 (12%), Positives = 91/266 (34%), Gaps = 16/266 (6%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HTP 130 I+ + ++ + + + + +++ Q+ + D + +T I ++ ++P Sbjct: 7 INNFLENLLYLKNYSQETINNYQKDLLQLNQALNDKNITSLTYSDILIWIKKLHAQGNSP 66 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 + + L+S+R F + + E V NP ++ PK + +++ Sbjct: 67 KTLQRKLSSVRSFFNFLINSEIVTQNPASGIKAPKSSKRLPKVVNTDELAYLLDVNPSND 126 Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLA 246 + F+ L G+R S+ ++ + + SI+ + L Sbjct: 127 IEARDIACFDLLYSCGIRLSELSSIELKDISISQKSIRVTGKGNKQRITYFGPKTLSNLD 186 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--------NKSAHGVRKFSATISA 298 ++T N + ++ + ++ + + + H +R A+ Sbjct: 187 RWLKIRDTLKPNCNYLFISRDGKHLTNRSIQKRLEIFSQKYASRHIHPHMLRHSFASHML 246 Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324 D+ + G + + YT Sbjct: 247 DSSKDLLAVKDLLGHADISSTQIYTH 272 >gi|301155134|emb|CBW14598.1| site-specific tyrosine recombinase [Haemophilus parainfluenzae T3T1] Length = 295 Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 37/271 (13%), Positives = 89/271 (32%), Gaps = 20/271 (7%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESR 126 L+++Y ++ ++ +++ D I+ + + + I + + Sbjct: 4 LLNQYWDYLRIERQVSPHTLTNYQHQLDAILAILAEKGIQHWQQVNPSVVRLILAESRKQ 63 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 S L+++R F + V+Q + +NP + PK+ + E +Q+ S Sbjct: 64 GLKEKSLALRLSALRQFFSYLVQQGQMKVNPATGISAPKQGKHLPKNIDAEQVQKLLSND 123 Query: 187 SEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 S+ + R E + SGLR S+ + + + ++ V Sbjct: 124 SKDPIDLRDRAMMELMYSSGLRLSELQGLNLNSINTRVREVRVIGKGNKERIVPFGRYAS 183 Query: 243 KLLAMTPIGKETFFIN-------NDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293 + + F ++ + + G+ + + H +R Sbjct: 184 HAIQQWLKVRPLFNPKDDALFVSQQGNRLTHRSIQKRMETWGIRQGLNSHLNPHKLRHSF 243 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324 AT +A + + G + + YT Sbjct: 244 ATHMLEASSDLRAVQELLGHSNLSTTQIYTH 274 >gi|300721450|ref|YP_003710725.1| site-specific tyrosine recombinase [Xenorhabdus nematophila ATCC 19061] gi|297627942|emb|CBJ88488.1| site-specific tyrosine recombinase [Xenorhabdus nematophila ATCC 19061] Length = 304 Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 42/271 (15%), Positives = 93/271 (34%), Gaps = 21/271 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGVESRKHTP 130 + + + L+ + + + + K G +++ + ++R V + Sbjct: 12 VEAFLRYLRVERRLSPLTITHYRHHLTVLAEISLKIGISEWQALDPVNVRLFVSRSRRAG 71 Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +S L+++R W V Q +A NP V P++K + +++ Q + Sbjct: 72 LESASIALRLSALRSFLDWMVMQGKLAANPAKMVSAPRKKRHLPKNMDVDEVNQLLNINL 131 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243 + R E + +GLR S+ + + ++ K V + Sbjct: 132 NDPLSVRDRTMLEVMYGAGLRLSELVGLNWRDVDLDSGDVWVRGKGSKERKVPFGRMAQE 191 Query: 244 LLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293 L +E F ND ++++A F+ + GV + + H +R Sbjct: 192 WLQRWLEMRELFEPENDAVFISSKSGKRISARNVQKRFEQWGIRQGVNSHINPHKLRHSF 251 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324 AT ++ + G + + YT Sbjct: 252 ATHILESSGDLRAVQELLGHANLSTTQIYTH 282 >gi|160900549|ref|YP_001566131.1| tyrosine recombinase XerD [Delftia acidovorans SPH-1] gi|160366133|gb|ABX37746.1| tyrosine recombinase XerD [Delftia acidovorans SPH-1] Length = 327 Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 43/289 (14%), Positives = 85/289 (29%), Gaps = 24/289 (8%) Query: 73 WLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESR- 126 + + + L+ N+ ++ R ++ R Sbjct: 35 DALDLFMDALLLEDGLSRNTLAAYRRDLTAWGRWLAHQQPPLALDAAGELELQGYFAVRV 94 Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + SS+ + LT +R + WA+R++ +A +P + ++ T+ ++ Sbjct: 95 EQTKASSSNRRLTVLRRYYHWALREQRIAADPTARMLAARQPPRVPHTLTQAQVEALLRA 154 Query: 186 WSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDG 240 + + R E + SGLR S+ + + ++ V Sbjct: 155 PDVDTPLGLRDRAMLELMYASGLRVSELVDLPLHGIDLRSGVLRVTGKGQKERLVPFGQE 214 Query: 241 FMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHG 288 L + F+ M+ F + K A AGV S H Sbjct: 215 AHWWLERYLATARGAILGGQRSDAVFVTQRGAAMSRVMFWVIVKRCAQVAGVTAPLSPHT 274 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 +R AT + GA + G + YT A + Sbjct: 275 LRHAFATHLLNHGADLRVVQMLLGHADISTTTIYTHVARERLKALHALH 323 >gi|291299701|ref|YP_003510979.1| integrase family protein [Stackebrandtia nassauensis DSM 44728] gi|290568921|gb|ADD41886.1| integrase family protein [Stackebrandtia nassauensis DSM 44728] Length = 317 Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 42/313 (13%), Positives = 106/313 (33%), Gaps = 25/313 (7%) Query: 50 ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKS-- 106 A + + + P + K ++ ++ + ++ + + ++ Sbjct: 2 ARSETEAADADDSQYEALPASFKEVLGQFVHHLTHECGRSAHTVRGYRADVTSLLVHLAA 61 Query: 107 -GDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162 G + +RS + +R+ +S + ++++R WA RQ ++ + + Sbjct: 62 TGTTRLAGVDIAGLRSWLANRRAQGIARASLARKVSAVRAFTAWAHRQGHLDADAGARLS 121 Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217 P + + + + G + R E L +G+R S+ C V + Sbjct: 122 GPSVPHNPPEILRTDQAETLAAATASDGSATGLRDRAVVELLYATGIRVSELCGLDVASV 181 Query: 218 QNNIFSIKTQKTG-TIITVELPDGFMKLLAMTPIGKETFFINNDKQ----------KMNA 266 + ++ G TV + + + +++ Sbjct: 182 DRSRNVLRVFGKGAKERTVPFGIPAARAVDDYLQRARPELAADHSGDALLLGVRGGRLHP 241 Query: 267 TQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK- 324 + + ++ G+ + HG+R +AT D GA + G ++D + YT Sbjct: 242 STVRRVLRDWLSRTGMPSLTPHGLRHSAATHLLDGGADLRSVQELLGHASIDSTQIYTHV 301 Query: 325 GADRIRLGIKNSR 337 A+R+R + + Sbjct: 302 SAERLRGAYRQAH 314 >gi|237795202|ref|YP_002862754.1| site-specific recombinase, phage integrase family [Clostridium botulinum Ba4 str. 657] gi|229261716|gb|ACQ52749.1| site-specific recombinase, phage integrase family [Clostridium botulinum Ba4 str. 657] Length = 326 Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 50/299 (16%), Positives = 109/299 (36%), Gaps = 46/299 (15%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRK-------------SGDFDYRKITTKHIRSG-- 122 Y ++ + N+ S++ R D + + I+ + I++ Sbjct: 23 YLRTI--KGKSENTIESYKLDLIMFFRFLKLYKGMVPGETEFNDIEIKDISDEDIKNISL 80 Query: 123 ----------VESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGI 171 R + + + + +++ F++ + + + NP L +E PK Sbjct: 81 TDLFAFVSFVENYRNNGSYAKARKVATLKSFFRFLQGKVKIIKENPALELESPKISKRNP 140 Query: 172 RPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229 T ++ ++ S + R L GLR S+ C + +++N+I ++ + Sbjct: 141 VYLTLDESKRLLSSIDGKFKERDLCIVTMFLNCGLRLSELCGINISNIKNDILTVVGKGN 200 Query: 230 GTIITVELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATK 279 TV L +K L ++ F++ + ++N + K K Sbjct: 201 -KERTVYLNKACIKTLNDYLSVRKEIGEKIVDKDALFLSKNYTRINKRSVEMLVKKYVKK 259 Query: 280 AGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKG-ADRIRLGI 333 AG++ S H +R +AT+ G L G + + + YT +DR+R + Sbjct: 260 AGLDGEKYSPHKLRHTAATLMYKHGGVDIRSLQMILGHENISTTQIYTHVDSDRLREAV 318 >gi|258511365|ref|YP_003184799.1| integrase family protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478091|gb|ACV58410.1| integrase family protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 307 Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 45/284 (15%), Positives = 91/284 (32%), Gaps = 21/284 (7%) Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSGVE 124 ++ + + A + + S+ + + D D ++T+ +R Sbjct: 2 TQSVGDAVKVFLDDAALR-FSPRTVRSYGQDLEAFRQWLDDRGVYDLDALSTRDVRMHAS 60 Query: 125 SRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 SS + L+ +R ++ + +V +V PKR R +E++ Sbjct: 61 DLLAKGAAKSSVARRLSCLRTFLRFCAERGWVRQVMAKNVRLPKRDRRLPRYLHEEEVAA 120 Query: 182 FKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE 236 + R EFL +G+R S+ + L + + K G V Sbjct: 121 LIDHVGGDDFVALRDRALLEFLYATGVRVSECVHLDIGDLDLSAGFARVLGKGGRERYVM 180 Query: 237 LPDGFMKLLAMT------PIGKETFFINNDKQKMNATQFSIWFKAKATKA-GVN-KSAHG 288 + + L FIN ++ + + + G+ HG Sbjct: 181 VGRRAVDALRRYLPLRDRMARCSAVFINRRGGRLTDRSVRRVLERRIQEVPGLRSIHVHG 240 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 +R AT + GA + G ++ + YT R +L Sbjct: 241 LRHSFATHMLNGGADLRSVQELLGHASLSSTQIYTHT-SREQLA 283 >gi|300114666|ref|YP_003761241.1| tyrosine recombinase XerD [Nitrosococcus watsonii C-113] gi|299540603|gb|ADJ28920.1| tyrosine recombinase XerD [Nitrosococcus watsonii C-113] Length = 305 Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 46/280 (16%), Positives = 95/280 (33%), Gaps = 24/280 (8%) Query: 75 ISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHTPS 131 + + + LA N+ ++ + R + + + + + R Sbjct: 16 LERFLDTLWLEEGLAENTLAAYRRDLEGFSRWLDSQGRALIRAQREDVLAYLAHRLEGGG 75 Query: 132 SAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187 + S +R +++ +R++ +P VE P+ ++ +++ + Sbjct: 76 KSRSVARSVSSLRRFYRYLMREKIRDSDPSDRVELPRLGRLLPESLSEGEVEALLAAPKT 135 Query: 188 ---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMK 243 G + R E L +GLR S+ + L + ++ + K V L + + Sbjct: 136 NDSLGLRDRTMLETLYATGLRVSELVNLTLSQLNSRQGVVRLSGKGNKERLVPLGEVALS 195 Query: 244 LLAMTPIG----------KETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRK 291 L E F+ M+ F K A ++G+ K+ H +R Sbjct: 196 WLDRYCHEARPGLVRGQLNEILFLTRRGGAMSRQAFWYLIKRYARQSGIQKTLSPHTLRH 255 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 AT + GA + G + + YT A R RL Sbjct: 256 AFATHLLNHGADLRVVQILLGHADLSTTQIYTHVA-RARL 294 >gi|188585653|ref|YP_001917198.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350340|gb|ACB84610.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 283 Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 49/285 (17%), Positives = 110/285 (38%), Gaps = 23/285 (8%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134 + E+ K+ + ++ + + ++ + + ++ HI +E+ ++ S Sbjct: 1 MREFEKTLKLKGYTEKTIKAYIGHIKRFLKVGLNINNKEDIQSHIIFLLEN-NNSHSYVN 59 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSV-------ERPKRKTEGIRPWTKEDMQQFKSFWS 187 Q ++++++L ++ YV ++ + RPK++ + +++++ + + + Sbjct: 60 QAISALKLLNNEITKKGYVDVHGIKTCVNQQIKVNRPKKERKLPNVLSQKEVLELLTVTT 119 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLL 245 + + + SGLR ++ R + L I IK K L D +K+L Sbjct: 120 -NIKHKAILCIIYSSGLRVGEAVRLKPEDLDGEQKIIHIKQGKGRKDRYTILSDNALKIL 178 Query: 246 AMTPIGKETFFI----NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 + N+ ++ F+ KA +NK S H +R AT + Sbjct: 179 RNYYKIYQPKKWLFPGQNENLHLSERSVQKIFQKAKQKANINKKVSVHSLRHSFATHLLE 238 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 AG + G ++ E YT + N RI S +D Sbjct: 239 AGTDLRYIQKLLGHESSKTTEIYTHITTQ------NISRIESPLD 277 >gi|163869346|ref|YP_001610602.1| integrase/recombinase XerD [Bartonella tribocorum CIP 105476] gi|161019049|emb|CAK02607.1| integrase/recombinase XerD [Bartonella tribocorum CIP 105476] Length = 312 Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 37/288 (12%), Positives = 98/288 (34%), Gaps = 33/288 (11%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRK 127 +I + + + ++ +++ + + + + S + + Sbjct: 6 VIERFLEMMSAERGASAHTLAAYQHDLQWAQDELSSHSVSLFSAQKEDLIGLLSLMHTFG 65 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS--- 184 +S + L+++R +++ + A +P ++ P++ + +++ + +F Sbjct: 66 FAATSQARRLSTLRQFYQFLYAEGLRADDPSHDIDAPRQGRPLPKIISEDVVIKFLDLAQ 125 Query: 185 -----------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTI 232 + + +L E L +GLR S+ VQ ++ +S+ K Sbjct: 126 LEVNQADYGSKDYLRALRLQLLSEMLYATGLRISELVSLPVQAVRGKEYSLLVRGKGKKE 185 Query: 233 ITVELPDGFMKLLAMTPIGKET---------FFINNDKQKMNATQFSIWFKAKATKAGVN 283 V L ++L ++ F +++ + + K A +AG+ Sbjct: 186 RMVLLSKKAYQVLLQWLDLRDQGKDAKSLYLFPAHSETGYIARQVVARELKNLAKRAGIT 245 Query: 284 ---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 S H +R A+ GA + G + + YT + Sbjct: 246 SESFSPHVLRHAFASHLLQNGADLRAVQHLLGHSDISTTQIYTHVLEE 293 >gi|21232926|ref|NP_638843.1| site-specific tyrosine recombinase XerC [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767001|ref|YP_241763.1| site-specific tyrosine recombinase XerC [Xanthomonas campestris pv. campestris str. 8004] gi|188990094|ref|YP_001902104.1| site-specific tyrosine recombinase XerC [Xanthomonas campestris pv. campestris str. B100] gi|34222915|sp|Q8P550|XERC_XANCP RecName: Full=Tyrosine recombinase xerC gi|81307012|sp|Q4UYY0|XERC_XANC8 RecName: Full=Tyrosine recombinase xerC gi|254799362|sp|B0RNK3|XERC_XANCB RecName: Full=Tyrosine recombinase xerC gi|21114762|gb|AAM42767.1| site-specific recombinase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66572333|gb|AAY47743.1| site-specific recombinase [Xanthomonas campestris pv. campestris str. 8004] gi|167731854|emb|CAP50038.1| site-specific tyrosine recombinase [Xanthomonas campestris pv. campestris] Length = 322 Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 43/284 (15%), Positives = 92/284 (32%), Gaps = 20/284 (7%) Query: 67 KPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSG 122 TL + + ++ ++ ++ +I + G D ++ + +R Sbjct: 24 ADATLSA-VEPFLAHLQIERQVSAHTLDAYRRDLAALIGWASAQGSEDVAQLDSAQLRKF 82 Query: 123 ---VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 R +P S + L++ R + W ++ +A +P ++ PK + + ++ Sbjct: 83 VTAEHRRGLSPKSLQRRLSACRSYYAWLLKHGRIATSPAAALRAPKAPRKLPQVLDADEA 142 Query: 180 QQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITV 235 + G + R E SGLR S+ C + L + K G V Sbjct: 143 VRLVEVPTDAPLGLRDRALLELFYSSGLRLSELCALRWRDLDLDSGLVTVLGKGGKQRLV 202 Query: 236 ELPDGFMKLLAMTPIG-----KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHG 288 + + L + F ++ I K A + G+ + H Sbjct: 203 PVGSHAVAALRAWQRDSGGSAQTHVFPGRAGGAISQRAVQIRIKQLAVRQGMFKHVHPHM 262 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 +R A+ ++ + G + + YT D L Sbjct: 263 LRHSFASHILESSGDLRGVQELLGHSDIATTQIYTH-LDFQHLA 305 >gi|89091916|ref|ZP_01164871.1| tyrosine recombinase [Oceanospirillum sp. MED92] gi|89083651|gb|EAR62868.1| tyrosine recombinase [Oceanospirillum sp. MED92] Length = 299 Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 32/260 (12%), Positives = 86/260 (33%), Gaps = 20/260 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTP---SSAIQFLT 138 L+ ++ ++ ++ + G + +T K +R S + L+ Sbjct: 17 RQLSPHTLDNYTRDINRFFDFTEEQGIPAWSSVTAKQVRQFAAQIHRQGLAGKSIQRSLS 76 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRLA 195 ++R F++ R+ V NP +V+ PK + + + + + + + + Sbjct: 77 ALRSFFRFLSREGVVDQNPADAVQAPKSQRKLPETLDVDQIDRLLDIPVKDAVSARDSAI 136 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254 E + SGLR S+ + L S++ K + + ++ + + Sbjct: 137 MELIYSSGLRISELVGLDIHSLDLADHSLRVLGKGNKQRELPIGRKALQAIDRWLDYRHE 196 Query: 255 FFINNDK--------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATA 304 ++ ++++ V + H +R A+ ++ Sbjct: 197 LASFDENALFVSSRGKRISVRTVQQRMYHWGKYLEVNGHVHPHRLRHSFASHMLESSGDL 256 Query: 305 HELMATYGWKTVDQAETYTK 324 + G + + + YT Sbjct: 257 RAVQELLGHEDISTTQIYTH 276 >gi|254472325|ref|ZP_05085725.1| tyrosine recombinase XerD [Pseudovibrio sp. JE062] gi|211958608|gb|EEA93808.1| tyrosine recombinase XerD [Pseudovibrio sp. JE062] Length = 295 Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 38/292 (13%), Positives = 87/292 (29%), Gaps = 42/292 (14%) Query: 90 NSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLF 144 N+ S+ + + D + +R+ + SS + L+++R + Sbjct: 11 NTLESYRTDLEDFDSFLTTQGVDLLAVQVTDVRAYLSDLTDRGFAASSQARRLSALRQFY 70 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTK--------------EDMQQFKSFWSEGS 190 ++ ++ +P +V P++ ++ + + Sbjct: 71 QFCYAEDIRDDDPTRTVASPRKAATLPSVLSEEEVDRLIGKAEELANITHDSDAKQIRAA 130 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQH-LQNNIFSIKTQKTGTIIT----------VELPD 239 + E L +GLR S+ V ++++ K G + Sbjct: 131 RIYTLLEVLYATGLRVSELVSLPVSAAIRDSRLITVKGKGGKERAVPLSPRAQSAMVEYV 190 Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATI 296 + F + + F KA A +A +++ S H +R A+ Sbjct: 191 RLRAAVGAYADSVWLFPSHGESGHFTRQAFGRDLKALALEADIDRNKVSPHVLRHAFASH 250 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 GA + G + + YT + R+ +V+ P Sbjct: 251 LLQNGADLRVVQQLLGHADISTTQIYTHVLEE---------RLQKLVEDHHP 293 >gi|177654275|ref|ZP_02936204.1| prophage LambdaBa02, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0174] gi|172080765|gb|EDT65846.1| prophage LambdaBa02, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0174] Length = 376 Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 48/332 (14%), Positives = 102/332 (30%), Gaps = 32/332 (9%) Query: 27 KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS 86 G ++I ++ +T +Y NS + L+ + + S Sbjct: 23 TGKRKQITKGGFKTKKAAQEEVARVTNDLANGDYENSDIR----FSQLVEIWTQEKE-SS 77 Query: 87 LAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS---MRV 142 ++ ++ +++ + G+ I + + + + + ++ Sbjct: 78 CRPSTLYQYKRILRSRVMPEFGEKRLSDIKPLSVHNFHQKLLKEGLTTKYISSVDVMLKQ 137 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202 + V E + NP +RPK K + WT E+ +F + +AF L++ Sbjct: 138 ILDKGVELEMINSNPAKKAKRPKVKKKAQASWTVEEAMKFMEYAKIQGSYYIAFVLALHT 197 Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKT-----------------GTIITVELPDGFMKLL 245 G+R + + + I Q+T + + + L Sbjct: 198 GMRIGEVLALQWKDINFESKVIHVQRTLTLVDGKYELGETKTEASNRMIPMTQELMREPL 257 Query: 246 AMTPIGKETFFINNDKQKM----NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300 K+ F + + KA V H +R+ TI D+ Sbjct: 258 EYQSHKKDNSFDLLICTRNKKIVHPYTIRYQMKALCEAIDVPYIRFHDIRRTFTTILIDS 317 Query: 301 GATAHELMATYGWKTVDQA-ETYTKGADRIRL 331 GA A + G V YT + ++ Sbjct: 318 GANAKVVSKLLGHTNVSTTLNIYTDVYEERQI 349 >gi|307691931|ref|ZP_07634168.1| Phage integrase [Ruminococcaceae bacterium D16] Length = 390 Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 49/335 (14%), Positives = 89/335 (26%), Gaps = 39/335 (11%) Query: 41 STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD 100 + ++ L + TL + + + +L N+ S+E Y Sbjct: 31 AKTQKELLAKLHRDMDLYQDAQLTEDSRMTLGEWLDRWMEEYGAVTLRPNTLRSYEQYIR 90 Query: 101 -QIIRKSGDFDYRKITTKHIRSGVESRKHTPS--------------SAIQFLTSMRVLFK 145 + G ++T I+ K ++ + K Sbjct: 91 CYVKPYLGGKIVSRVTRLDIQKLYRKLKKEGRVHDHPEYGHELSDSMVLRIHAMLHRCLK 150 Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205 A R V NP V+ PK + + +E M F + + R F L +GLR Sbjct: 151 DAERDHIVPYNPTDGVKLPKSNYKPKQVLDREQMDAFLAAVDKNEIWRDFFYTELTTGLR 210 Query: 206 CSDSCRAGVQHLQNN---------------------IFSIKTQKTGTIITVELPDGFMKL 244 + C + N + + + + Sbjct: 211 RGEICGLMWRDFDENAGTLKILRSVNVPKRGELEIGETKTERGRRTIRLPPSTVQRLKER 270 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGAT 303 ++ + + W K +AG+ H +R AT + +G Sbjct: 271 KKHAISQWIFPEPLAPEKPVRPSAAYYWMKVLLKEAGLPHIRFHDLRHTFATHALASGVD 330 Query: 304 AHELMATYGWKTVD-QAETYTKGA-DRIRLGIKNS 336 A L G +TYT D R Sbjct: 331 AKTLSGILGHTNASFTLDTYTHVTPDMQRAASDVV 365 >gi|257791164|ref|YP_003181770.1| integrase family protein [Eggerthella lenta DSM 2243] gi|317488103|ref|ZP_07946680.1| phage integrase [Eggerthella sp. 1_3_56FAA] gi|325832921|ref|ZP_08165594.1| phage integrase, N-terminal SAM domain protein [Eggerthella sp. HGA1] gi|257475061|gb|ACV55381.1| integrase family protein [Eggerthella lenta DSM 2243] gi|316912811|gb|EFV34343.1| phage integrase [Eggerthella sp. 1_3_56FAA] gi|325485786|gb|EGC88250.1| phage integrase, N-terminal SAM domain protein [Eggerthella sp. HGA1] Length = 323 Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 42/284 (14%), Positives = 98/284 (34%), Gaps = 32/284 (11%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKI--TTKHIRSGV---ESR 126 LI + + + +V++ ++ R + + T + +R + + Sbjct: 23 ELIDAFCHAMRVERNASVHTLRAYRIDLMDFARWACRERIDILAATHRQLRRYLGELDRA 82 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 +++ ++ + L+++R F+W +P ++ PK+ DM + + + Sbjct: 83 QYSRTTVNRRLSALRSFFRWLNVTGIADEDPASILQGPKQPKSLPHVIRASDMVKLLTVY 142 Query: 187 -------------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-----------NIF 222 S ++ EFL G R S++ ++ + Sbjct: 143 GKRDAAGREREQSSVDARNLALLEFLYACGARVSEASGLLAANVDFGSGQVKVFGKGSKE 202 Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 I + ++ + + L + + FF++ +M FK +AG+ Sbjct: 203 RIVPLHDMAVSSMRAYATWARPLILRDRTCDYFFVSTRGNRMGTDAIRKMFKDALRQAGL 262 Query: 283 N--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + S H +R AT D GA + G ++ + YT Sbjct: 263 DESLSPHDMRHTFATDLLDGGADLRSVQEMLGHASLSTTQIYTH 306 >gi|311068135|ref|YP_003973058.1| site-specific tyrosine recombinase XerC [Bacillus atrophaeus 1942] gi|310868652|gb|ADP32127.1| site-specific tyrosine recombinase XerC [Bacillus atrophaeus 1942] Length = 304 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 35/283 (12%), Positives = 89/283 (31%), Gaps = 27/283 (9%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI------TTKHIRSGVE 124 L EY + + + + +++ ++ T+ + Sbjct: 7 FLKLFVEYLQIE--KNYSQYTIVNYVDSIEEFETFLRVQRINGFEEAAYHDTRIFLTEAY 64 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQ 180 + + + + ++++R +K+ +R++ V NP V PK++ + +++ Sbjct: 65 EKGLSRRTISKKISALRSFYKFLMREKLVEENPFQLVHLPKQEKRIPKFLYQKELEELFA 124 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD 239 + G + + E L +G+R S+ V + + ++ K + Sbjct: 125 VSDTSLPTGQRDQALLELLYATGMRVSECSSLTVNGVDLFMDTVLVHGKGKKQRYIPFGS 184 Query: 240 GFMKLLAMTPIG------------KETFFINNDKQKMNATQFSIWFKAKATKAG--VNKS 285 + L + + F+N + KA ++ Sbjct: 185 YAHEALELYVNSGRQRLLEKAKESHDVLFVNQRGGPLTVRGVRYILSGLVKKASGTLHIH 244 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 H +R AT + GA + G + + YT + Sbjct: 245 PHMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQIYTHVSKE 287 >gi|150008883|ref|YP_001303626.1| tyrosine type site-specific recombinase [Parabacteroides distasonis ATCC 8503] gi|301311928|ref|ZP_07217850.1| integrase/recombinase XerC [Bacteroides sp. 20_3] gi|149937307|gb|ABR44004.1| tyrosine type site-specific recombinase [Parabacteroides distasonis ATCC 8503] gi|300830030|gb|EFK60678.1| integrase/recombinase XerC [Bacteroides sp. 20_3] Length = 302 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 49/277 (17%), Positives = 97/277 (35%), Gaps = 25/277 (9%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGVESRK 127 LI ++ + + + + ++ DQ R G F+ +I + +RS + S Sbjct: 2 LIDDFLNYLRYERNYSNYTIGAYSKDLDQFQRYVREHREGVFNPGEIDSDFVRSWIVSLM 61 Query: 128 H---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-----WTKEDM 179 +P S + L+S++ FK+ +++ V+ NP V PK K Sbjct: 62 DEKLSPVSVNRKLSSLKSFFKFLMKRGIVSANPLRLVSGPKTKKPLPYFIKDSELEALLD 121 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239 EG + RL E L +G+R S+ + +K + Sbjct: 122 GDGFDEDFEGVRNRLVIEMLYDTGMRRSELIGIRNVDVDYEAMQVKVTGKRNKQRLIPFA 181 Query: 240 GFMKLLAMTPIGKE---------TFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHG 288 +K L + FF+ + +++ K + ++ + +S H Sbjct: 182 EGLKNLMLAYTEVRDREVEAAGEWFFVRKNGNQLSTGIVYNIVKKQLSEIPMLAKRSPHV 241 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 +R AT + GA + + G ++ YT Sbjct: 242 LRHSFATSMLNNGAELNAVKDLLGHSSLASTSVYTHT 278 >gi|154247950|ref|YP_001418908.1| integrase family protein [Xanthobacter autotrophicus Py2] gi|154162035|gb|ABS69251.1| integrase family protein [Xanthobacter autotrophicus Py2] Length = 467 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 54/354 (15%), Positives = 106/354 (29%), Gaps = 24/354 (6%) Query: 7 LPPFVTKERTRHGKII---YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE---- 59 +P F+ K K Y G R+ + E T A A R Sbjct: 28 IPGFLVKITPTGRKTFMIAYVANNGQRRKPAIGRYGEITVEQARRIAQDWLAEVRRGADP 87 Query: 60 -YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESY-FDQIIRKSGDFDYRKITTK 117 + ++ T+K L + ++ S + I+ G +T Sbjct: 88 SAERTASRQAPTVKELFDRFITDYSESRNKPSTVKSNRGFGKRHILPALGHMKVPDVTRS 147 Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 I + ++ +P +A + L+++R +F A PK G + Sbjct: 148 DIANLMKKMSKSPVNANRVLSAVRKMFNMAEVWGMRPDGTNPCRHIPKFPERGKTRLITD 207 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-- 235 + + + ++ + +R A + + +S ++ Sbjct: 208 AEMRKLFEYLDRAEAEGLEHPFIILAIRLQFEFAARMSEIIELEWSWVDFDNRRVVWPDS 267 Query: 236 ----ELPDGFMKLLAMTPI-------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284 + L + + + K+ M+ + +K +AG+ Sbjct: 268 KTGGMSKPMNAEALRLFETAPLLEDSPFVCPSVFDPKKAMSPYTYYQGWKRILKRAGLPH 327 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNS 336 HG+R SAT A++G MA KTV Y D +R + Sbjct: 328 VGTHGIRHRSATDIANSGVPVKVGMALTAHKTVTMFMRYVHTEDDPVRAAAEAV 381 >gi|257869686|ref|ZP_05649339.1| site-specific recombinase [Enterococcus gallinarum EG2] gi|257803850|gb|EEV32672.1| site-specific recombinase [Enterococcus gallinarum EG2] Length = 299 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 38/266 (14%), Positives = 85/266 (31%), Gaps = 25/266 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIR---SGVESRKHTPSSAIQFLT 138 + ++ +++ + R G+ D+ I + +R S + R ++ +S + + Sbjct: 18 RGYSDKTKSAYQEDMEDFFRFLKESGNEDFLAIDHRDVRVYLSFLNERNYSRNSISRKMA 77 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPRL 194 S+R + + + E + NP + K+ + R + +++M+ + R Sbjct: 78 SLRSFYHFLTKHEVIKENPFAYIHLKKKNAKLPRFFYEKEMEALFESVKGHEPLQQRNRA 137 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKLLAMTPIGKE 253 E L SGLR S+ + + + K V + L Sbjct: 138 LLEILYGSGLRVSECSNLTLSDVDWENGVLLIHGKGNKDRYVPFGSYAQEALRDYVSAGR 197 Query: 254 TFFINNDKQKM------------NATQFSIWFKAKATKAGVN--KSAHGVRKFSATISAD 299 + ++ AT K+ ++ H +R AT + Sbjct: 198 QQLMEKHHKRHEIVFVNHLGDGITATGIEYVLNQIIRKSSLDSKIHPHMLRHTFATHLLN 257 Query: 300 AGATAHELMATYGWKTVDQAETYTKG 325 GA + G + + Y Sbjct: 258 HGADMRTVQELLGHANLSTTQIYAHV 283 >gi|187929889|ref|YP_001900376.1| site-specific tyrosine recombinase XerD [Ralstonia pickettii 12J] gi|187726779|gb|ACD27944.1| tyrosine recombinase XerD [Ralstonia pickettii 12J] Length = 314 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 50/304 (16%), Positives = 93/304 (30%), Gaps = 28/304 (9%) Query: 54 STPKREYINSPRKKPTTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSG--DFD 110 R+ +P P + I + + LA N+ ++ + Sbjct: 2 RKAARKDAEAPSLPPQS-ADAIQRFCDALWLEDGLARNTLDAYRRDLTLYAHWLAERNKS 60 Query: 111 YRKITTKHIRSGVESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168 + + +R SSA + T + F+WA+R+ V +P + K+ Sbjct: 61 IAETEDGDLADYFAARHAESRASSANRRRTVFKRFFQWALREHVVNTDPSRLLPTAKQPP 120 Query: 169 EGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIF 222 + ++ ++ + + + R E + SGLR S+ + + Sbjct: 121 RFPKTLSETQVEALINAPDVDTPLGLRDRAMIELMYASGLRVSEIVALKTVEVGLNEGVV 180 Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK-------------MNATQF 269 + K G V L ++T ++ M F Sbjct: 181 RVVGGKGGKDRLVPFGAEAGDWLRRYLQDRQTGRTALLGERTADALFVTARGEGMTRQAF 240 Query: 270 SIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 K A A + S H +R AT + GA + G + + YT A Sbjct: 241 WYLIKRYALLADIHAPLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVA- 299 Query: 328 RIRL 331 R RL Sbjct: 300 RERL 303 >gi|57239387|ref|YP_180523.1| integrase/recombinase [Ehrlichia ruminantium str. Welgevonden] gi|57161466|emb|CAH58391.1| putative integrase/recombinase XerD or XerC [Ehrlichia ruminantium str. Welgevonden] Length = 312 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 39/281 (13%), Positives = 85/281 (30%), Gaps = 29/281 (10%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRSGV 123 ++++++ ++N+ +S+ D++I+ D + +R Sbjct: 8 DIVNDWKIWMEQEKRYSLNTVVSYVRDLDKLIKFLHKSTGCSVTLNDLVHVKIGDLRKWF 67 Query: 124 ESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED-- 178 SR + + L+++R F++ R Y+ + RP K + Sbjct: 68 ASRYQCGVEAVTNARSLSALRNFFRYLSRMYYIDSQAVFYLSRPHLKKTLPKVLAGSHIE 127 Query: 179 ----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234 + + L SG R S+ Q ++ + I + + Sbjct: 128 IILNYYKQLPQNWVDMRNFAIMMLLYGSGFRISEVVNLKFQDVREDRLFITGKGNKERVV 187 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKM---------NATQFSIWFKAKATKAGVNK- 284 L + L Q + + T F+ + + G+ Sbjct: 188 PILSMVYKSLCQYIECCPYYLGARPSNQYIFVGVRGKKLSRTHFANIMQKLRAEMGLPDI 247 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +AH R AT GA + G ++ + YT Sbjct: 248 TTAHTFRHSFATHLFIGGADIRSVQELLGHTSLSTTQIYTH 288 >gi|225164361|ref|ZP_03726626.1| integrase family protein [Opitutaceae bacterium TAV2] gi|224801041|gb|EEG19372.1| integrase family protein [Opitutaceae bacterium TAV2] Length = 329 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 49/314 (15%), Positives = 97/314 (30%), Gaps = 38/314 (12%) Query: 51 LTGSTPKREYINSPRKKPTTLKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKS--- 106 + E P P + ++ + A +V + ++ F+ R Sbjct: 1 MVKKNAVTENAQQPAVPPAIVAEWLTPFLDYLARERRYSVYTVRNYRQAFEDFYRWLVSS 60 Query: 107 ----------GDFDYRKITTKHIRSG--VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA 154 K+T + +R R+ + ++ +R +K+ +R V+ Sbjct: 61 GLRDAANESAASLAPDKLTPRDLRDFVIEGQRRFDRRTLHNHVSGLRSFYKYWLRHGRVS 120 Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFK------------SFWSEGSQPRLAFEFLLYS 202 NP + + PK + + T++ M+ + RLA E L Sbjct: 121 RNPLVGLALPKLEKRLPKFLTEQQMKLLLSGPQRLLDNVADITPFTAWRDRLAMELLYGG 180 Query: 203 GLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKETFFIN--- 258 GLR S+ + + K L + +L Sbjct: 181 GLRVSELTALDYGQIDFTSGVARVLGKGRKERLCPLGKVALAVLVKWKNEYARDTSPAAP 240 Query: 259 ----NDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYG 312 + ++M Q + K AG+ S H +R AT +AGA + G Sbjct: 241 VLVTPEHERMPVRQVQLMLKRYLALAGLPTDLSPHKLRHSYATHLLNAGADLRLVQELLG 300 Query: 313 WKTVDQAETYTKGA 326 +++ + YT + Sbjct: 301 HASLNTTQIYTHVS 314 >gi|204930199|ref|ZP_03221176.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204320603|gb|EDZ05805.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|322613026|gb|EFY09977.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617386|gb|EFY14286.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625622|gb|EFY22444.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627045|gb|EFY23838.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631239|gb|EFY28002.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638272|gb|EFY34971.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642792|gb|EFY39379.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646966|gb|EFY43468.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650353|gb|EFY46766.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656356|gb|EFY52650.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657581|gb|EFY53851.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665992|gb|EFY62173.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666731|gb|EFY62908.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322671026|gb|EFY67156.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322679267|gb|EFY75319.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681671|gb|EFY77698.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686002|gb|EFY81990.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323192628|gb|EFZ77856.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196494|gb|EFZ81644.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203754|gb|EFZ88775.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323205371|gb|EFZ90345.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210740|gb|EFZ95616.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323215908|gb|EGA00641.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221401|gb|EGA05819.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227581|gb|EGA11737.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231766|gb|EGA15877.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236181|gb|EGA20258.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239582|gb|EGA23630.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244322|gb|EGA28330.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249581|gb|EGA33493.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250327|gb|EGA34213.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256534|gb|EGA40265.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323259768|gb|EGA43401.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265176|gb|EGA48674.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323268395|gb|EGA51867.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 300 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 44/278 (15%), Positives = 94/278 (33%), Gaps = 21/278 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSGVESRKHTP 130 +S + + L+ + +++ D II +G+ +++ +RS + Sbjct: 10 VSRFLRYLGVERQLSPITLQNYQRQLDAIIALAGETGLKSWQQCDAAIVRSFAVRSRRKG 69 Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +S L+++R F W V Q + NP V PK + +D+ + Sbjct: 70 LGSASLALRLSALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKNIDVDDVNRLLDIDL 129 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243 + R E + +GLR S+ ++HL + K + + + Sbjct: 130 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLPIGRNAVT 189 Query: 244 LLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 + + F + + ++++A F K G+ + H +R A Sbjct: 190 WIEHWLDLRGLFASDEEALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFA 249 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 T ++ + G + + YT D L Sbjct: 250 THMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 286 >gi|306822461|ref|ZP_07455839.1| tyrosine recombinase XerD [Bifidobacterium dentium ATCC 27679] gi|309801460|ref|ZP_07695587.1| tyrosine recombinase XerD [Bifidobacterium dentium JCVIHMP022] gi|304554006|gb|EFM41915.1| tyrosine recombinase XerD [Bifidobacterium dentium ATCC 27679] gi|308221975|gb|EFO78260.1| tyrosine recombinase XerD [Bifidobacterium dentium JCVIHMP022] Length = 318 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 41/298 (13%), Positives = 94/298 (31%), Gaps = 43/298 (14%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRK 127 + L+ ++ L+ + ++ S + + G D +TT+H+ V S Sbjct: 5 ERLVRQFLAHIDVERGLSKATVCAYGSDLHKYVSWLHEQGIHDLDDVTTRHVEEYVASLD 64 Query: 128 HTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + SA + L S+ ++A+ + V + V+ PK + + +++ + Sbjct: 65 DSGESARSKARRLASIHAFHRFALSEHVVHDDVASQVKAPKGASTLPDVLSVDEVMRLMD 124 Query: 185 FWSEG-------------------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225 + + EF+ +G R S++C + + + + Sbjct: 125 SIPLSRHHDGKQGHGDAAADDPVMLRDKALLEFMYATGSRVSEACGVDLDDIDLDDKVAR 184 Query: 226 -TQKTGTIITVELPDGFMKLLAMTPIG--------------KETFFINNDKQKMNATQFS 270 K V + + L F+N ++++ Sbjct: 185 LMGKGSKQRLVPVGSFACEALRRYLRFGRPALQSKSKGAAEHRAVFLNKRGKRLSRQSVW 244 Query: 271 IWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 + +A + H +R AT GA + G +V + YT + Sbjct: 245 EIIRTAGERAHITKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVS 302 >gi|295135108|ref|YP_003585784.1| tyrosine type site-specific recombinase [Zunongwangia profunda SM-A87] gi|294983123|gb|ADF53588.1| tyrosine type site-specific recombinase [Zunongwangia profunda SM-A87] Length = 363 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 47/258 (18%), Positives = 91/258 (35%), Gaps = 9/258 (3%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ 135 Y +V++ ++ ++F++ I D + IR ++S S Sbjct: 96 ENYLLKLELKRYSVSTIKTYVTFFEKFINHYSQRDIDSLDECEIRLFLQSLIQENKSNSY 155 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195 ++ + K+ N +ERP+R+ + ++E++ + + R Sbjct: 156 INQAINAI-KFYYEVVCGMPNRFYDMERPRREHRLPQVISREEIFAIIENTN-NIKHRCI 213 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPDGFMKLLAMTPIGKE 253 E L SGLR S+ +Q + + IK + K L + + L + Sbjct: 214 VELLYSSGLRRSELLNLKLQDIDSKRMLIKIKAGKGNKDRFTILSEKCLAHLRQYYRKWK 273 Query: 254 TFFINNDKQK---MNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELM 308 + Q + K ++KA NK S H +R AT ++G ++ Sbjct: 274 PEIYLFEGQPGKQYSGASVLKVVKNASSKAKPNKNISPHILRHSFATHLLESGVDLRKIQ 333 Query: 309 ATYGWKTVDQAETYTKGA 326 G + E YT A Sbjct: 334 VLLGHGSTKTTEIYTHVA 351 >gi|148252009|ref|YP_001236594.1| site-specific tyrosine recombinase XerC [Bradyrhizobium sp. BTAi1] gi|146404182|gb|ABQ32688.1| tyrosine recombinase XerC subunit [Bradyrhizobium sp. BTAi1] Length = 324 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 36/288 (12%), Positives = 81/288 (28%), Gaps = 34/288 (11%) Query: 77 EYRKSAHW-GSLAVNSRISFESYFDQ----IIRKSGD----FDYRKITTKHIRSGVESRK 127 ++ L+ + ++ Q + G + + IR+ + R+ Sbjct: 27 QWLAHLRSERRLSPKTVEAYARDLRQCLQFLCTHWGGPVTLARFAALEAADIRAFMAMRR 86 Query: 128 ---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 S ++ L +R ++ R+ + + PK +P + ++ Sbjct: 87 ADDIAGRSLMRTLAGLRSFGRFLEREGQGKVGALAGIRAPKIAKSLPKPLPMDAAKRLAD 146 Query: 185 FW---------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK---TQKTGTI 232 ++ L SGLR S++ + + T K Sbjct: 147 ADERAGETRETWVLARDAAVMALLYGSGLRISEALGLKRREVPRPGEGDVLVVTGKGNKT 206 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQ-------KMNATQFSIWFKAKATKAGVN-- 283 V + ++L+ ++ + + G+ Sbjct: 207 RMVPVLQNVLQLIDDYARLCPYPLPAEGPMFLGAKGGPLSPRIIQLAMERLRGALGLPDS 266 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 + H +R AT G + G ++ + YT G D RL Sbjct: 267 ATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQVYT-GIDSERL 313 >gi|84683488|ref|ZP_01011391.1| tyrosine recombinase XerC [Maritimibacter alkaliphilus HTCC2654] gi|84668231|gb|EAQ14698.1| tyrosine recombinase XerC [Rhodobacterales bacterium HTCC2654] Length = 313 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 42/289 (14%), Positives = 89/289 (30%), Gaps = 29/289 (10%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSG 122 + +S + A N+ ++ + G +T +R+ Sbjct: 12 RDALSGWLDHLRALDGAAANTIEAYRKDVVSFLAFLSAHHGTSHGRTALASVTISDMRAW 71 Query: 123 VESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + S + SA + L++++ ++W ++ + LS PK + RP ++E Sbjct: 72 MASERAGGLSARSLARALSAVKGFYRWLSDRDGFDASTVLSTRAPKFTAKLPRPVSQEAA 131 Query: 180 QQFKSFW-------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 ++ S G++ L GLR S++ + K G Sbjct: 132 EEVISTTAIQARDGWIGARDAAVVTLLYGCGLRISEALGLTGRAHPLPDVLRIVGKGGKE 191 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMN-------ATQFSIWFKAKATKAGVNKS 285 V + +A ++ ++ + G+ + Sbjct: 192 RLVPVLPAARDAVASYVRLCPYPVTDDTPLFYGARGKALGPRTVQKAMESARLQLGLPAT 251 Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R AT +AG + G ++ + YT D RL Sbjct: 252 ATPHAMRHSFATHLLNAGGDLRAIQELLGHASLSTTQAYT-AVDTQRLM 299 >gi|167917076|ref|ZP_02504167.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei BCC215] Length = 310 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 42/288 (14%), Positives = 92/288 (31%), Gaps = 31/288 (10%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTP 130 I +Y + L+ ++ ++ D++ R + +T +R + + + Sbjct: 10 IVDYLSNLRHVRKLSDHTLRAYAHELDELKRLANGRPLDSLTAIDMRSAVARAHAGGLSA 69 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 S L++ R ++W + + NP +V PKR + + +D + G+ Sbjct: 70 RSISHRLSAWRAFYRWFSQHVEMNANPVAAVRAPKRAKTLPKALSVDDTAALMDAPTAGT 129 Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS------------IKTQKTGTIIT 234 + E SGLR ++ ++++++ + K Sbjct: 130 AESLRDHAILELFYSSGLRLAELIGLDIEYVKDGAYRSAGWLDLAEAEVTVHGKGDKERK 189 Query: 235 VELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--K 284 V + + L F++ +M+ K A AG+ Sbjct: 190 VPVGRKALDALHAWLAVRGELVKHDPRPLFLSVRGNRMSPGVVRERVKRAALAAGIPANV 249 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R AT + + G ++ + YT D L Sbjct: 250 HPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYT-SLDFQHLA 296 >gi|255320348|ref|ZP_05361532.1| site-specific recombinase XerC [Acinetobacter radioresistens SK82] gi|262379369|ref|ZP_06072525.1| tyrosine recombinase XerC [Acinetobacter radioresistens SH164] gi|255302543|gb|EET81776.1| site-specific recombinase XerC [Acinetobacter radioresistens SK82] gi|262298826|gb|EEY86739.1| tyrosine recombinase XerC [Acinetobacter radioresistens SH164] Length = 306 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 40/278 (14%), Positives = 86/278 (30%), Gaps = 27/278 (9%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSG----VESRK 127 L+S + K + + ++ ++ + I +R VE + Sbjct: 8 LLSMWLKEREIQNQSAHTLSAYARDVKDFLDFCAVKKLPLNSIEASDLREYLALKVEREQ 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185 + SS + L+++R KWA + +Y+ NP + ++ E +QQ Sbjct: 68 LSSSSLQRHLSAIRQFMKWAEQGQYLGFNPADDFQLKRQPRPLPGMIDIETVQQILDQPA 127 Query: 186 ------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELP 238 + + E L SGLR ++ ++ + N ++ V Sbjct: 128 PEKLQDQHLWLRDKAMLELLYSSGLRLTELQSLCMKDIDFNRRLLRITGKGNKTRIVPFG 187 Query: 239 DGFMKLLAMTPIGKETFFINNDKQ----------KMNATQFSIWFKAKATKAG--VNKSA 286 + L + + ++ Q K +A +AG ++ Sbjct: 188 TQAYESLLKWLEVYRLWQGQFNADSAVFISQKGGQLGPRQIENRVKLQALRAGVNIDLHP 247 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R A+ + G + + YT Sbjct: 248 HLLRHCFASHMLSNSGDLRAVQEMLGHSNLSTTQIYTH 285 >gi|188586009|ref|YP_001917554.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|254799348|sp|B2A335|XERC_NATTJ RecName: Full=Tyrosine recombinase xerC gi|179350696|gb|ACB84966.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 299 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 44/287 (15%), Positives = 96/287 (33%), Gaps = 30/287 (10%) Query: 73 WLISEYRKSAH-WGSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVESRK 127 L+ + + +L+ + ++ + + + + ++T KHIR + K Sbjct: 4 ELLD-FLEFLKGEKNLSHYTVDNYYKDLTQAENFFNEQFELYQWDEVTHKHIRHFLAYLK 62 Query: 128 HT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 S+ + L+++R LFK+ R+E + N + PK++ + + E+++ + Sbjct: 63 DKNYEKSTTARKLSAIRSLFKFLTREEKIRSNTSALLATPKKERKLPEFLSIEEVEMLIN 122 Query: 185 FWSE---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDG 240 + G + + E SG+R + +Q+L T K L Sbjct: 123 APGDDPFGLRDKAILEVFYCSGIRLGELWGLDLQNLDLQTGYLKVTGKGNIERLAPLGSF 182 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQF--------------SIWFKAKAT--KAGVNK 284 + + + +K N K + Sbjct: 183 ALAAIEDYLYNARPELLKKNKSVENCDALFLNKFGTRISQRSIRRRVKKYVQQTASEHRV 242 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 S H +R AT + GA + G + + YT ++ R+ Sbjct: 243 SPHSLRHSFATHLLEGGADLRAVQELLGHVNISTTQIYTH-VNQARM 288 >gi|89895059|ref|YP_518546.1| hypothetical protein DSY2313 [Desulfitobacterium hafniense Y51] gi|89334507|dbj|BAE84102.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 322 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 39/306 (12%), Positives = 87/306 (28%), Gaps = 46/306 (15%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKI-----TTKHIRSGVES 125 + + +Y + L+ N+R S+E + I ++ Sbjct: 6 EAWLKKYLSYLNVERGLSPNTRNSYERDLRKFTAFLQQRGKNIIACEGNDLFLFLLQEKN 65 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + + + ++L ++R F + + +E +P + PK + ++ + + Sbjct: 66 QGRSARTLARYLATLRGFFAFLLGEEMREDDPTEYLSTPKLEQHLPHVLSEGSISKLMGE 125 Query: 186 WSEGS---------------------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218 + + E L GLR S+ V + Sbjct: 126 GGDRDKEGPKPGKSSKKAGDSDSEGKDKGLLMRNMAMIEVLYGCGLRVSELVGLKVSDII 185 Query: 219 NNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFINNDKQ----------KMNAT 267 +++ + V + + +++L K + Sbjct: 186 FETRTLRCRGKGSKERIVPIGEYALEVLQNYLEHDRERLRGKHKTEVLFLNSRGTALTRQ 245 Query: 268 QFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 K A GV ++ H R AT D GA + G + + YT Sbjct: 246 GIWDILKKWAQTHGVQENIYPHKFRHSFATHLLDHGADLRSVQEMLGHADIATTQIYTHL 305 Query: 326 ADRIRL 331 + + L Sbjct: 306 SRQRLL 311 >gi|58579355|ref|YP_197567.1| integrase/recombinase [Ehrlichia ruminantium str. Welgevonden] gi|58417981|emb|CAI27185.1| Integrase/recombinase [Ehrlichia ruminantium str. Welgevonden] Length = 318 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 39/281 (13%), Positives = 85/281 (30%), Gaps = 29/281 (10%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRSGV 123 ++++++ ++N+ +S+ D++I+ D + +R Sbjct: 14 DIVNDWKIWMEQEKRYSLNTVVSYVRDLDKLIKFLHKSTGCSVTLNDLVHVKIGDLRKWF 73 Query: 124 ESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED-- 178 SR + + L+++R F++ R Y+ + RP K + Sbjct: 74 ASRYQCGVEAVTNARSLSALRNFFRYLSRMYYIDSQAVFYLSRPHLKKTLPKVLAGSHIE 133 Query: 179 ----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234 + + L SG R S+ Q ++ + I + + Sbjct: 134 IILNYYKQLPQNWVDMRNFAIMMLLYGSGFRISEVVNLKFQDVREDRLFITGKGNKERVV 193 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKM---------NATQFSIWFKAKATKAGVNK- 284 L + L Q + + T F+ + + G+ Sbjct: 194 PILSMVYKSLCQYIECCPYYLGARPSNQYIFVGVRGKKLSRTHFANIMQKLRAEMGLPDI 253 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +AH R AT GA + G ++ + YT Sbjct: 254 TTAHTFRHSFATHLFIGGADIRSVQELLGHTSLSTTQIYTH 294 >gi|126654062|ref|ZP_01725888.1| site-specific tyrosine recombinase XerC [Bacillus sp. B14905] gi|126589442|gb|EAZ83589.1| site-specific tyrosine recombinase XerC [Bacillus sp. B14905] Length = 299 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 42/277 (15%), Positives = 90/277 (32%), Gaps = 24/277 (8%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR-- 126 + ++ + +V++ +ES + G D + H R V Sbjct: 7 DALEQFMLYIQVEKNFSVHTVREYESDLLDFLAFLQGEGIHDLASVEYIHARLYVTKLYD 66 Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 K +S + ++S+R F++ RQ S+ PK+++ + +E++ Q Sbjct: 67 EKRARASISRKISSIRSFFRFLNRQYGFDDGAFRSLYHPKKESRLPNFFYEEELMQLFDA 126 Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--IITVELPD 239 + + + E L +G+R S+ V+ + + I+ G I Sbjct: 127 NTGDDLKSLRNMAILELLYATGIRVSELTSIQVKDVDFHYSIIRVMGKGRKERIIPFGQF 186 Query: 240 GFMKLLAMTPIGKETFFINNDKQKM---------NATQFSIWFKAKATKAGVNKS--AHG 288 + +L + + Q++ KA ++ H Sbjct: 187 ASLAMLDYIEQARPRLMKKTNHQQLFVNMRGGELTPRGVRHVLNEMIDKASLHTKIYPHM 246 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 +R AT + GA + G + + YT Sbjct: 247 LRHTFATHLLNNGADLRTVQELLGHSHLSSTQVYTHV 283 >gi|262163686|ref|ZP_06031427.1| tyrosine recombinase XerC [Vibrio mimicus VM223] gi|262027902|gb|EEY46566.1| tyrosine recombinase XerC [Vibrio mimicus VM223] Length = 310 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 38/286 (13%), Positives = 95/286 (33%), Gaps = 22/286 (7%) Query: 68 PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGV 123 P L + + H L++ ++ +++ + + + + G + ++ +R V Sbjct: 10 PNALAQPLERFYAYLHSEKGLSLYTQRNYKQQLETMARYLAQMGLTSWPQLDAAWVRQLV 69 Query: 124 ---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + + SS L+S+R + + + + NP V P+++ + ++M Sbjct: 70 VLGKRQGMKASSISTRLSSLRSFLDFLILRGELQANPAKGVSAPRKQRPLPKNLDVDEMA 129 Query: 181 QFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236 Q + + R E + SGLR ++ ++ + I+ V Sbjct: 130 QLLEVTDDDPLSIRDRAIMELMYGSGLRLAELVSIDMKDVNLRDGEIRVIGKGNKERKVW 189 Query: 237 LPDGFMKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKAGV--NKSA 286 + + + +++ +++ K V + S Sbjct: 190 FAGQAQEWVGKWLKLRSQLANSDETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISP 249 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R AT ++ + G + + + YT D L Sbjct: 250 HKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTH-LDFQHLA 294 >gi|28867454|ref|NP_790073.1| integrase/recombinase XerC [Pseudomonas syringae pv. tomato str. DC3000] gi|213970725|ref|ZP_03398850.1| integrase/recombinase XerC [Pseudomonas syringae pv. tomato T1] gi|81732947|sp|Q88B11|XERC_PSESM RecName: Full=Tyrosine recombinase xerC gi|28850688|gb|AAO53768.1| integrase/recombinase XerC [Pseudomonas syringae pv. tomato str. DC3000] gi|213924559|gb|EEB58129.1| integrase/recombinase XerC [Pseudomonas syringae pv. tomato T1] Length = 299 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 37/296 (12%), Positives = 86/296 (29%), Gaps = 24/296 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR------SGVESRK 127 + Y ++ ++ ++ +++ I+ + + Sbjct: 5 LDAYCMHLRSERQVSPHTLEAYRRDLSKVLAYCQKARLSSWNDLDIQHLRSFTARQHQQG 64 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + S + L+++R +K+ R+ +P + PK + + + Q Sbjct: 65 QSSRSLARMLSAVRGFYKYLNREGLCQHDPANGLSPPKGERRLPKTLDTDRTAQLLDGGV 124 Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFM 242 E + + E L SGLR S+ + L K + + Sbjct: 125 EDDFLAHRDQAIMELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVGSKAR 184 Query: 243 KLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSA 294 + L + F++ +++ + K + G N H +R A Sbjct: 185 QALETWLPLRALTNPQDDAVFVSQQGKRLGPRAVQLRIKTAGERELGQNLHPHMLRHSFA 244 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG---IKNSRRISSVVDSDD 347 + ++ + G + + YT D L R +DD Sbjct: 245 SHLLESSQDLRAVQELLGHADIKTTQIYTH-LDFQHLATVYDSAHPRAKRKGAADD 299 >gi|83951418|ref|ZP_00960150.1| Integrase/recombinase [Roseovarius nubinhibens ISM] gi|83836424|gb|EAP75721.1| Integrase/recombinase [Roseovarius nubinhibens ISM] Length = 352 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 72/327 (22%), Positives = 126/327 (38%), Gaps = 24/327 (7%) Query: 19 GKIIYYFRKGHGRRIRLPYP--HESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76 G YY RK ++ L F+ Y +A+ R +L +I Sbjct: 9 GTTYYYLRKRGQSKVPLGKGPIDSPEFLSRYSAAM------GTKKTPSRAAKDSLGHIIE 62 Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136 ++ SA++ + + R + + D + G + +I HIRS + +P +A Sbjct: 63 LFKASANYRAYSEAYRGTLGRHSDALKECYGSAPFSEIKPHHIRSDLSQL--SPHAANDR 120 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDMQQFKSFWSEGSQPRLA 195 L R+L ++A + ++R K +G RPW+ D+ F++ W GS RL Sbjct: 121 LKIWRLLCQYAYDHNFADHVASDGIKRGKLPKTDGHRPWSTADVNAFRAKWEIGSVQRLC 180 Query: 196 FEFLLYSGLRCSDSCRAGVQHL-----------QNNIFSIKTQKTGTIITVELPDGFMKL 244 FE L ++ R D+ + + + + + L Sbjct: 181 FELLFWTAARTIDAVTLTPSMIGADGVLTFTQAKTGGKAYVPWNCALPGWAKHFETDRTL 240 Query: 245 LAMTPIGKETFFINNDKQK-MNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGA 302 L F+ + + S A A +A + SAHG+RK T A+AG Sbjct: 241 LKACITSTTFTFLETSNGRARSRKGLSNIISAGAAEAKLTGLSAHGLRKSRLTAIAEAGG 300 Query: 303 TAHELMATYGWKTVDQAETYTKGADRI 329 +A +M+ G K++ +AE Y A+R Sbjct: 301 SASAIMSWGGHKSLKEAEDYVSTANRK 327 >gi|308172775|ref|YP_003919480.1| Tyrosine recombinase xerD [Bacillus amyloliquefaciens DSM 7] gi|307605639|emb|CBI42010.1| Tyrosine recombinase xerD [Bacillus amyloliquefaciens DSM 7] Length = 321 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 41/316 (12%), Positives = 93/316 (29%), Gaps = 24/316 (7%) Query: 47 YMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS 106 ++ + + P + T + + + + +L+ ++ + + Sbjct: 2 RLARRSNIIAAVPETDKPEIELTDFETAYNAFIRECKIKNLSEHTLKYYRNELLSFRSML 61 Query: 107 GDFDYRK---------ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP 157 + I ++ +S L ++R F + + + NP Sbjct: 62 EQQGVSTRPEKITLPILKENVIVYMMDKLGRKETSINTRLRAIRAFFNFLEKNRMIGDNP 121 Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAG 213 + K+K E I +++E ++ +G+ + L+ +G+R + Sbjct: 122 AKELSLVKQKKEVIETFSREQLRDILRQPDQGTFTGFRDYTIMLLLIETGVRVRELTDIS 181 Query: 214 VQHLQNNIFSI-KTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN-----NDKQKMNAT 267 V+ ++ I K V + L + + D + Sbjct: 182 VKDIRWEDSQILINGKGYKERLVPIQSTVKTRLRKYVQIRGDVPNDALFVTIDNTPLTTR 241 Query: 268 QFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 Q A + S H R A +S GA L A G ++D Y Sbjct: 242 QVQNRLSKYGRMANIKNVRCSPHTFRHTFAKMSVQNGADVFALQAVLGHSSLDMVRNYVN 301 Query: 325 GADRIRLGIKNSRRIS 340 R + ++ S Sbjct: 302 LFSRDVM--DAHKKFS 315 >gi|83310025|ref|YP_420289.1| integrase [Magnetospirillum magneticum AMB-1] gi|82944866|dbj|BAE49730.1| Integrase [Magnetospirillum magneticum AMB-1] Length = 285 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 36/264 (13%), Positives = 89/264 (33%), Gaps = 16/264 (6%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130 L + +L+ ++ S+ + R + ++ +R+ + Sbjct: 7 LRRRMIEDMTVRNLSPATQRSYLHAVSKFSRFF-NRSPDRLDHDDVRTWQVHLVSQGISW 65 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 +S QF+ ++R + +R + ++ + +++ +F Sbjct: 66 ASLNQFVAALRFFYGVTLRCPEIPERIV----YARQPRRLPIVLSADEVVRFLEAV-PSL 120 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMT 248 + R A +GLR S+ + + + I+ K V L + +L Sbjct: 121 KNRTALTTAYATGLRVSEVVALKLADIDSGRMVIRVEQGKGRKDRYVMLSAQLLGILRTY 180 Query: 249 PI---GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303 + F + + + T + ++ AG++K + H +R AT +AG Sbjct: 181 WPLARPEHWLFPGREDKPIEPTVLNSACRSACVAAGIDKRVTVHTLRHSFATHLLEAGTD 240 Query: 304 AHELMATYGWKTVDQAETYTKGAD 327 + G + YT+ ++ Sbjct: 241 IRIIQVLLGHNNLSTTARYTQVSN 264 >gi|262172887|ref|ZP_06040565.1| tyrosine recombinase XerC [Vibrio mimicus MB-451] gi|261893963|gb|EEY39949.1| tyrosine recombinase XerC [Vibrio mimicus MB-451] Length = 310 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 39/286 (13%), Positives = 95/286 (33%), Gaps = 22/286 (7%) Query: 68 PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGV 123 P L + + H L++ ++ +++ + + + + G + ++ +R V Sbjct: 10 PNALAQPLERFYAYLHSEKGLSLYTQRNYKQQLETMARYLAQMGLTSWPQLDAAWVRQLV 69 Query: 124 ---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + + SS L+S+R + + + + NP V P+++ + ++M Sbjct: 70 VLGKRQGMKASSISTRLSSLRSFLDFLILRGELQANPAKGVSAPRKQRPLPKNLDVDEMA 129 Query: 181 QFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236 Q + + R E + SGLR ++ V+ + I+ V Sbjct: 130 QLLEVSDDDPLSIRDRAIMELMYGSGLRLAELVSIDVKDVNLRDGEIRVIGKGNKERKVW 189 Query: 237 LPDGFMKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKAGV--NKSA 286 + + + +++ +++ K V + S Sbjct: 190 FAGQAQEWVGKWLKLRSQLANSDETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISP 249 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R AT ++ + G + + + YT D L Sbjct: 250 HKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTH-LDFQHLA 294 >gi|170718451|ref|YP_001783668.1| site-specific tyrosine recombinase XerC [Haemophilus somnus 2336] gi|189030077|sp|B0UWL5|XERC_HAES2 RecName: Full=Tyrosine recombinase xerC gi|168826580|gb|ACA31951.1| tyrosine recombinase XerC [Haemophilus somnus 2336] Length = 295 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 38/279 (13%), Positives = 95/279 (34%), Gaps = 21/279 (7%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESRKHT 129 L+ +Y L+ + I+++ ++I ++++ ++++T +R + + Sbjct: 4 LLQKYYNYLRIERQLSPYTLINYQRQLEKIVVILQQNDIHSWQQVTPSVVRFVLAQSRKE 63 Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ---FK 183 S L+++R + V Q + +N + + PK+ + E +QQ + Sbjct: 64 GLHERSLALRLSALRQFLNYLVVQGELKVNSAVGISAPKQSKYLPKNMDMEQVQQLLTNE 123 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 S + + E + SGLR S+ + + ++ + Sbjct: 124 SKEPIDLRDKAMMELMYSSGLRLSELQSLNLNSINIRSREVRVIGKGNKERILPFGRYAS 183 Query: 243 KLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFS 293 + + E F++ +++ + + G+N H +R Sbjct: 184 QAIQQWLKVRLLFNPKDEALFVSQLGNRISHRSIQKRMETWGIRQGLNGHLNPHKLRHSF 243 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 AT + + + G + + YT D L Sbjct: 244 ATHMLENSSDLRAVQELLGHSNLSTTQIYTH-LDFQHLA 281 >gi|330827985|ref|YP_004390937.1| Tyrosine recombinase XerC [Aeromonas veronii B565] gi|328803121|gb|AEB48320.1| Tyrosine recombinase XerC [Aeromonas veronii B565] Length = 325 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 48/305 (15%), Positives = 104/305 (34%), Gaps = 26/305 (8%) Query: 53 GSTPKREYINSPRKKPTTLKWLISE---YRKSAHW-GSLAVNSRISFESYFDQIIRKS-- 106 TP + +P P L E + + L+ ++R +++++ + + + Sbjct: 2 ARTPAKAPAKAPVIAPPLPAALADELAAFIEYLRVERQLSPHTRNNYQAHLEAMTAELVA 61 Query: 107 -GDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162 G D+ ++ +R+ V P S ++++R W VRQ + NP + Sbjct: 62 LGLTDWGRLEASQVRTLVTRMHKAGLAPRSLSTKVSALRSFCDWQVRQGRLTANPARGIV 121 Query: 163 RPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218 PK+ + ++M Q + + R E + SGLR ++ + L+ Sbjct: 122 TPKQGRPLPKNLDVDEMHQLLNITDEQDPLAVRDRAIMELMYSSGLRLAELVGINLVDLK 181 Query: 219 NNIFS-IKTQKTGTIITVELPDGFMKLLAMTPIGKE--------TFFINNDKQKMNATQF 269 + T K + + ++ L + F+++ KQ+++A Sbjct: 182 LDDRQLKVTGKGSRERVLPIGRMAVEWLQKWLKVRPLLAGDESEALFVSSRKQRLSARSV 241 Query: 270 SIWFKAK--ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 + H +R AT ++ + G + + YT D Sbjct: 242 QARLDGWGNKQALNAHVHPHKLRHSFATHMLESSGDLRAVQELLGHADLSTTQIYTH-LD 300 Query: 328 RIRLG 332 L Sbjct: 301 FQHLA 305 >gi|330962350|gb|EGH62610.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. maculicola str. ES4326] Length = 290 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 38/285 (13%), Positives = 84/285 (29%), Gaps = 23/285 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR------SGVESRKHTPSSAIQFLT 138 ++ ++ ++ +++ T I+ + + + S + L+ Sbjct: 7 RQVSPHTLEAYRRDLGKVLAFCQKAGLSSWTNLDIQHLRSFTARQHQQGQSSRSLARMLS 66 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPRL 194 ++R +K+ R+ +P + PK + + + Q + + Sbjct: 67 AVRGFYKYLNREGICQHDPANGLSPPKGERRLPKTLDTDRAAQLLDGAVEEDFLAQRDQA 126 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLAMT----- 248 E L SGLR S+ + L K + + K L Sbjct: 127 ILELLYSSGLRLSELTGLNLDQLDLRAGLVQVLGKGSKTRVLPVGSKARKALESWLPLRA 186 Query: 249 --PIGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSATISADAGATAH 305 + F++ +++ KA + G N H +R A+ ++ Sbjct: 187 LTNPQDDAVFVSQHGKRLGPRAVQNRVKAAGERELGQNLHPHMLRHSFASHLLESSQDLR 246 Query: 306 ELMATYGWKTVDQAETYTKGADRIRLG---IKNSRRISSVVDSDD 347 + G + + YT D L R +DD Sbjct: 247 AVQELLGHADIKTTQIYTH-LDFQHLATVYDSAHPRAKRKGSADD 290 >gi|303237489|ref|ZP_07324054.1| putative tyrosine recombinase XerC [Prevotella disiens FB035-09AN] gi|302482309|gb|EFL45339.1| putative tyrosine recombinase XerC [Prevotella disiens FB035-09AN] Length = 292 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 39/287 (13%), Positives = 94/287 (32%), Gaps = 24/287 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKHT 129 I ++ K + + + + + + D + I T +R VE Sbjct: 3 IEDFLKYLTFERNYSQRTIGEYSEDLHGFEQFYKKLDDELSWENIDTDVVRDWVEYMMDK 62 Query: 130 PSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-----QQ 181 ++A + L+++R +++A+++ +V +P ++ PKRK + + +M + Sbjct: 63 GNTATSVNRRLSALRSFYRYALKRGFVENDPTYKLQGPKRKKPLPQFLKEAEMDTLLVPE 122 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELPDG 240 + R +G+R S+ + + T K + Sbjct: 123 MWGNTYKDVLARTIILTFYSTGIRVSELVGLNNKDINIVTHEIKVTGKRNKQRIIPFGKE 182 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQ--FSIWFKAKATKAGV-------NKSAHGVRK 291 + + + + + A + KA + KS H +R Sbjct: 183 LEEQIDTYQKLRNDEIGEQEALFVTAKGERITTAQVRTMVKANLAKVSTLKKKSPHVLRH 242 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337 AT + A + G +++ E YT ++++ + Sbjct: 243 TFATAMLNNKAGLESVKKLLGHESIVTTEVYTHVTFEQLKKAYNEAH 289 >gi|27364549|ref|NP_760077.1| site-specific tyrosine recombinase XerC [Vibrio vulnificus CMCP6] gi|320154951|ref|YP_004187330.1| tyrosine recombinase XerC [Vibrio vulnificus MO6-24/O] gi|34222789|sp|Q7ZAI9|XERC_VIBVU RecName: Full=Tyrosine recombinase xerC gi|71153412|sp|Q7MQB9|XERC_VIBVY RecName: Full=Tyrosine recombinase xerC gi|27360668|gb|AAO09604.1| tyrosine recombinase XerC [Vibrio vulnificus CMCP6] gi|319930263|gb|ADV85127.1| tyrosine recombinase XerC [Vibrio vulnificus MO6-24/O] Length = 316 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 35/280 (12%), Positives = 92/280 (32%), Gaps = 22/280 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRS---GVESRK 127 + ++ + L+++++ +++ + + G + ++ +R Sbjct: 17 LDQFYEYLRAEKGLSLHTQRNYKQQLETMAEHLHSMGLKAWPQVDAGWVRQLAGKGMREG 76 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 SS L+S+R F + + + + NP V P++K + +++ Q Sbjct: 77 MKASSIATRLSSLRSFFDFLILRGILTANPAKGVSAPRKKRPLPKNLDVDEVNQLLEVNE 136 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243 + + R E + +GLR ++ V+ + I+ V ++ Sbjct: 137 DDPLAIRDRAIMELMYGAGLRLAELVDIDVRDVHLRSGEIRVIGKGNKERKVPFAGMAVE 196 Query: 244 LLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293 + + F++ +++ K V + + H +R Sbjct: 197 WVGKWLKVRSGLADPSEPALFVSKLGTRISHRSVQKRMAEWGQKQAVASHITPHKLRHSF 256 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 AT ++ + G + + + YT D L Sbjct: 257 ATHILESSNNLRAVQELLGHENISTTQIYTH-LDFQHLAD 295 >gi|289672837|ref|ZP_06493727.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. syringae FF5] gi|330900733|gb|EGH32152.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. japonica str. M301072PT] gi|330941149|gb|EGH44028.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. pisi str. 1704B] gi|330976605|gb|EGH76649.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 299 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 38/299 (12%), Positives = 89/299 (29%), Gaps = 24/299 (8%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR------SGVE 124 + Y ++ ++ ++ +++ + I+ + Sbjct: 2 DQHLDAYCMHLRSERQVSPHTLEAYRRDLGKVLAYCQKAQLSSWSDLDIQHLRSFTARQH 61 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + + S + L+++R +K+ R+ +P + PK + + + Q Sbjct: 62 QQGQSSRSLARMLSAVRGFYKYLNREGICQHDPANGLSPPKGERRLPKTLDTDRTAQLLD 121 Query: 185 FWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPD 239 E + + E L SGLR S+ + L K + + Sbjct: 122 GGVEDDFLAHRDQAILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVGS 181 Query: 240 GFMKLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRK 291 + L + + F++ +++ + KA + G N H +R Sbjct: 182 KARQALEVWLPLRALTHPQDDAVFVSQQGKRLGPRAIQVRLKAAGERELGQNLHPHMLRH 241 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG---IKNSRRISSVVDSDD 347 A+ ++ + G + + YT D L R +DD Sbjct: 242 SFASHLLESSQDLRAVQELLGHADIKTTQIYTH-LDFQHLATVYDSAHPRAKRKGAADD 299 >gi|169830712|ref|YP_001716694.1| phage integrase family protein [Candidatus Desulforudis audaxviator MP104C] gi|169637556|gb|ACA59062.1| phage integrase family protein [Candidatus Desulforudis audaxviator MP104C] Length = 300 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 47/291 (16%), Positives = 98/291 (33%), Gaps = 24/291 (8%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGV-- 123 L+ +I E+ + + + ++ S + +TT +R Sbjct: 4 LQEVIREFLRYLRAEKDASPETLAAYRSDLRPLEDFLFRERIAPELANLTTPVLRRYFIW 63 Query: 124 --ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 E RK +S + + R F++ QEY+ +P + PK +E+++ Sbjct: 64 LQEERKLKAASLRRKIHCFRSFFRYLAEQEYIPGDPMRKIRPPKEPDRVPIYLKEEELKW 123 Query: 182 FKSFWSE-----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITV 235 + + +L L Y GLR S+ R + +++ + G + Sbjct: 124 LLTAPGHLGGPYHLRDKLILHLLAYCGLRRSELLRLDWDDVDLGAGTLRVRGKGKRERLI 183 Query: 236 ELPDGFMKLLAMTPIGKETFFIN-----NDKQKMNATQFSIWFKAKATKAGVN---KSAH 287 L ++L + + +MN + FK AG++ + H Sbjct: 184 PLIPELQQILWEYLQTRLPLENRALFLGREGGRMNKDALTRLFKRYVRMAGLDPAVITPH 243 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSR 337 +R AT+ + G + G + Y + R+R ++ R Sbjct: 244 KLRHSFATLLLEKGTDVFTIQELMGHADLASTRIYAHCSSKRLREAVERIR 294 >gi|330970503|gb|EGH70569.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. aceris str. M302273PT] Length = 299 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 38/299 (12%), Positives = 89/299 (29%), Gaps = 24/299 (8%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR------SGVE 124 + Y ++ ++ ++ +++ + I+ + Sbjct: 2 DQHLDAYCMHLRSERQVSPHTLEAYRRDLGKVLAYCQKAQVSSWSDLDIQHLRSFTARQH 61 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + + S + L+++R +K+ R+ +P + PK + + + Q Sbjct: 62 QQGQSSRSLARMLSAVRGFYKYLNREGICQHDPANGLSPPKGERRLPKTLDTDRAAQLLD 121 Query: 185 FWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPD 239 E + + E L SGLR S+ + L K + + Sbjct: 122 GGVEDDFLAHRDQAILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVGS 181 Query: 240 GFMKLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRK 291 + L + + F++ +++ + KA + G N H +R Sbjct: 182 KARQALEVWLPLRALTNPQDDAVFVSQQGKRLGPRAIQVRLKAAGERELGQNLHPHMLRH 241 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG---IKNSRRISSVVDSDD 347 A+ ++ + G + + YT D L R +DD Sbjct: 242 SFASHLLESSQDLRAVQELLGHADIKTTQIYTH-LDFQHLATVYDSAHPRAKRKGAADD 299 >gi|294828085|ref|NP_712528.2| integrase/recombinase XerD [Leptospira interrogans serovar Lai str. 56601] gi|302393797|sp|Q7ZAM8|XERC_LEPIN RecName: Full=Tyrosine recombinase xerC gi|302393800|sp|Q72RY9|XERC_LEPIC RecName: Full=Tyrosine recombinase xerC gi|293385933|gb|AAN49546.2| integrase/recombinase XerD [Leptospira interrogans serovar Lai str. 56601] Length = 311 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 53/303 (17%), Positives = 96/303 (31%), Gaps = 28/303 (9%) Query: 64 PRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIR 120 P +L ++ + + N+ ++ D +I IR Sbjct: 9 PEFSSESLNETAKKFINYLKIEKNYSQNTINAYSIDLKFFFEFCEKEQLDIFQIEPVDIR 68 Query: 121 SGVESRKHT----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 S S + L+S+R +K +R++ V NP + PK + E + + Sbjct: 69 SYFAYLAKKHEIDRRSQSRKLSSLRTFYKVLLREDLVKSNPATQLSFPKVRKEVPKNFRI 128 Query: 177 EDMQQFKSFWSEGS------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKT 229 + ++ F SE + + R E L SGLR + A + L ++ K Sbjct: 129 NETEEILEFESENASEVSEIRDRAMIEVLYSSGLRVFELVNAKLNSLSKDLTVLKVLGKG 188 Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFI-------NNDKQKMNATQFSIWFKAKATKAGV 282 V + L + F N +K+ + K G Sbjct: 189 RKERFVYFGKEAVSSLQKYLEYRNVSFPDAEEIFLNQRGKKLTTRGVRYILNERRKKMGW 248 Query: 283 NKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI-----RLGIKN 335 K+ H R AT DAGA + G ++ + Y + R + Sbjct: 249 EKTITPHKFRHTFATDLLDAGAEIRAVQELLGHSSLSTTQIYLSVSKEKIKEVYRKAHPH 308 Query: 336 SRR 338 +R+ Sbjct: 309 ARK 311 >gi|258625073|ref|ZP_05719992.1| tyrosine recombinase XerC [Vibrio mimicus VM603] gi|258582624|gb|EEW07454.1| tyrosine recombinase XerC [Vibrio mimicus VM603] Length = 310 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 39/286 (13%), Positives = 95/286 (33%), Gaps = 22/286 (7%) Query: 68 PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGV 123 P L + + H L++ ++ +++ + + + + G + ++ +R V Sbjct: 10 PNALAQSLERFYAYLHSEKGLSLYTQRNYKQQLETMARYLAQMGLTSWPQLDAAWVRQLV 69 Query: 124 ---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + + SS L+S+R + + + + NP V P+++ + ++M Sbjct: 70 VLGKRQGMKASSISTRLSSLRSFLDFLILRGELQANPAKGVSAPRKQRPLPKNLDVDEMA 129 Query: 181 QFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236 Q + + R E + SGLR ++ V+ + I+ V Sbjct: 130 QLLEVTDDDPLSIRDRAIMELMYGSGLRLAELVSIDVKDVNLRDGEIRVIGKGNKERKVW 189 Query: 237 LPDGFMKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKAGV--NKSA 286 + + + +++ +++ K V + S Sbjct: 190 FAGQAQEWVGKWLKLRSQLANSDETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISP 249 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R AT ++ + G + + + YT D L Sbjct: 250 HKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTH-LDFQHLA 294 >gi|229170493|ref|ZP_04298144.1| Site-specific recombinase, phage integrase [Bacillus cereus AH621] gi|228612963|gb|EEK70137.1| Site-specific recombinase, phage integrase [Bacillus cereus AH621] Length = 352 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 56/318 (17%), Positives = 108/318 (33%), Gaps = 39/318 (12%) Query: 51 LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFE---SYFDQIIRKSG 107 ++ KR T+ L ++ + A + ++ YF + G Sbjct: 9 VSKRKGKRVKKELRTFTTHTIDDLFEKFYHAKVAEGRAERTLHQYKENFRYFTYFLDYKG 68 Query: 108 -DFDYRKITTKHIRSG--------------------VESRKHTPSSAIQFLTSMRVLFKW 146 + ITT IR+ + +PS+ L ++RV+F++ Sbjct: 69 LSRNIDTITTDVIRNYVVFMKNEKIQFEDHNYKPSDCKKVGLSPSTINTRLKTLRVMFRF 128 Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPRLAFEFLLYS 202 + +E + NP V+ E I T +++++ + + LL + Sbjct: 129 LIDEELMESNPMKQVKDVNEPQEEIAVLTVDELRRLLDVPNKRSYSDFRNYVIMNLLLDT 188 Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQ----KTGTIITVELPDGFMKLLA-----MTPIGKE 253 LR S++ V + + I + K+ V + + LL + Sbjct: 189 FLRISEALSLTVNDIDLSTKVITVRATVAKSRKARIVPIKNTTANLLKDLIKENEEFETD 248 Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATY 311 FI N +++M+ F K A + G+ K H R AT+ +AG L Sbjct: 249 HVFITNYEEQMDRNHFRKRLKGYAKETGITKNVHPHLFRHTGATMFLEAGGDIRHLQMLL 308 Query: 312 GWKTVDQAETYTKGADRI 329 G + YT + + Sbjct: 309 GHADLRMVMRYTHLSKQA 326 >gi|89053521|ref|YP_508972.1| site-specific tyrosine recombinase XerC [Jannaschia sp. CCS1] gi|88863070|gb|ABD53947.1| phage integrase [Jannaschia sp. CCS1] Length = 307 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 43/290 (14%), Positives = 87/290 (30%), Gaps = 29/290 (10%) Query: 71 LKWLISEYRKSAH-WGSLAVNSRISFESYFDQII----RKSGDFD----YRKITTKHIRS 121 ++ L++ + A + ++ + + + G R + T+ +R+ Sbjct: 9 VRDLLAGWLTHLRGVRGRAEATLTAYGADVGEFLAFQADHLGGSPGPAALRTLQTRDLRA 68 Query: 122 GV---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + +R S + L++++ + W ++ LS+ PK RP T+ Sbjct: 69 WMSSQRARDVGARSLARRLSAVKAFYNWWAERDGFDATAVLSMRAPKHTRRLPRPLTEVG 128 Query: 179 MQQFK-------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 + ++ L GLR S++ L T K G Sbjct: 129 AKDMIAGLADQDDRDWVQARDMAVVTLLYGCGLRISEALGLTADLLPLPGILRITGKGGK 188 Query: 232 IITVELPDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKAGVNK 284 V + A F + + + + G+ Sbjct: 189 EREVPVLPAAQDACARYAQLCPHDLAPGTPLFRAIRGGALGPRAVAKVMEKTRLQLGLPA 248 Query: 285 S--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 + H +R AT DAG + G ++ + YT D RL Sbjct: 249 TATPHAMRHSFATHLLDAGGDLRAIQELLGHASLSTTQAYT-AVDTARLM 297 >gi|86140290|ref|ZP_01058849.1| putative site-specific recombinase [Leeuwenhoekiella blandensis MED217] gi|85832232|gb|EAQ50681.1| putative site-specific recombinase [Leeuwenhoekiella blandensis MED217] Length = 298 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 36/280 (12%), Positives = 95/280 (33%), Gaps = 27/280 (9%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQII----RKSGDFDYRKITTKHIRSGVESR 126 I+ Y + + ++ ++++ + D ++++ ++R+ + Sbjct: 3 FSAFIN-YLELE--RKYSKHTVLAYQKDLEAFFLFLNEHYAVEDPKEVSYVYVRAWIVHL 59 Query: 127 ---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + S + ++S++ FK+ + + ++P + K K E P+++ ++ Sbjct: 60 TDVGVSHRSINRKISSLKAFFKFLQKTGDIEVSPLAKHKSLKIKKEIQVPFSETEVNTVI 119 Query: 184 SFWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVEL 237 G + +G+R S+ V + + +I K + L Sbjct: 120 KMLQSGEDFSELRDLAIVTLFYATGMRRSELINLKVADIDFDQHNIKVLGKRNKERIIPL 179 Query: 238 PDGFMKLLAMTPIGKETFFINNDK---------QKMNATQFSIWFKAKATKA--GVNKSA 286 L +E + ++ + K+ T ++A S Sbjct: 180 IPWLEDGLKKYLSVRENYGVDKNSGFLLLTDKGDKLYETFVCRIINRYFSRASQKTKTSP 239 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 H +R AT + GA + + G ++ + YT + Sbjct: 240 HMLRHTFATHLLNNGADLNAVKELLGHASLASTQVYTHTS 279 >gi|299536758|ref|ZP_07050066.1| tyrosine recombinase xerC [Lysinibacillus fusiformis ZC1] gi|298727770|gb|EFI68337.1| tyrosine recombinase xerC [Lysinibacillus fusiformis ZC1] Length = 299 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 42/277 (15%), Positives = 90/277 (32%), Gaps = 24/277 (8%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR-- 126 + ++ + +V++ +ES + G D + H R V Sbjct: 7 DALEQFMLYIQVEKNFSVHTVREYESDLLDFLTFLQTEGIDDLASVEYIHARLYVTKLYD 66 Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 K +S + ++S+R F++ RQ + S+ PK+++ + +E+++Q Sbjct: 67 EKRARASISRKISSIRSFFRFLNRQYGLDDGAFRSLYHPKKESRLPNFFYEEELKQLFDA 126 Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 + + + E L +G+R S+ V+ + + I+ G + F Sbjct: 127 NTGDDLKSLRNIAILELLYATGIRVSELTSIQVEDVDFHYSIIRVMGKGRKERIIPFGQF 186 Query: 242 MKLLAMTPIGKETFFINNDKQKM-----------NATQFSIWFKAKATKAGVNKS--AHG 288 L I + + + KA ++ H Sbjct: 187 ASLAMQDYIEQARPRLMKKTNHLQLFVNMRGGELTPRGVRHILNEMIDKASLHTKIYPHM 246 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 +R AT + GA + G + + YT Sbjct: 247 LRHTFATHLLNNGADLRTVQELLGHSHLSSTQVYTHV 283 >gi|323524461|ref|YP_004226614.1| tyrosine recombinase XerC [Burkholderia sp. CCGE1001] gi|323381463|gb|ADX53554.1| tyrosine recombinase XerC [Burkholderia sp. CCGE1001] Length = 307 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 44/294 (14%), Positives = 90/294 (30%), Gaps = 31/294 (10%) Query: 69 TTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVE 124 T I+ Y + L+ ++ + D++ + + +T IR + Sbjct: 1 MTETDFIAAYLSNLEHERRLSAHTLRGYAHELDELRLLTKGRPLQSLTAVDIRGAVARAH 60 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + T S L++ R ++W + + NP +V PK+ + + +D + Sbjct: 61 AGGLTARSISHRLSAWRAFYRWLAGRVDLPANPVATVRAPKQAKALPKALSVDDANRLME 120 Query: 185 FWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----------- 229 EG + E SGLR S+ V+ + Sbjct: 121 SPPAASAEGLRDHAMLELFYSSGLRLSELVGLDVRFADVDGHRSAGWLKLDSAEVEVLGK 180 Query: 230 -GTIITVELPDGFMKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKA 280 V + ++ L ++ ++ +++ K A A Sbjct: 181 GNQRRIVPVGSKALEALNAWLAVRDEMVKHDPHPLFLSARGNRLSPNVVRERVKRAALVA 240 Query: 281 GVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 G+ H +R AT + + G ++ + YT G D L Sbjct: 241 GIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYT-GLDFQHLA 293 >gi|34497827|ref|NP_902042.1| integrase/recombinase XerC [Chromobacterium violaceum ATCC 12472] gi|81655548|sp|Q7NVH1|XERC_CHRVO RecName: Full=Tyrosine recombinase xerC gi|34103683|gb|AAQ60044.1| integrase/recombinase XerC [Chromobacterium violaceum ATCC 12472] Length = 299 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 40/277 (14%), Positives = 83/277 (29%), Gaps = 17/277 (6%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP- 130 I + + + ++ ++ + + + R T +R + Sbjct: 2 DEAIRRFIEHLAVAGRSPHTLAAYRADIELLENMMQAKSARDATAAELRKALAKLHAQGL 61 Query: 131 --SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187 S + L+S R + W R NP + PKR + + Sbjct: 62 SSRSLARRLSSWRQFYHWLQRNGEREDNPAAGLYAPKRDKLLPKALPVDGTAALLDRIEG 121 Query: 188 ---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMK 243 ++ R FE + GLR S++ + + + ++ + G V + M Sbjct: 122 ESELDARDRAIFELVYSCGLRLSETVALNLDDVDFSDSLLRIRGKGGKERLVPIGAEAML 181 Query: 244 LLAMT------PIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSAHGVRKFSAT 295 L + + F+ ++ Q + A K AG + H +R A+ Sbjct: 182 RLRTWLGERSAGMDEPALFLGRHGHRLGGRQVEKRLRDWAIKTGAGQHVHPHMLRHSFAS 241 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 + + G + + YT D L Sbjct: 242 HMLQSSGDLRAVQELLGHANLSSTQIYT-ALDFQHLA 277 >gi|296394928|ref|YP_003659812.1| tyrosine recombinase XerD [Segniliparus rotundus DSM 44985] gi|296182075|gb|ADG98981.1| tyrosine recombinase XerD [Segniliparus rotundus DSM 44985] Length = 306 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 41/284 (14%), Positives = 87/284 (30%), Gaps = 35/284 (12%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSGVES----- 125 + +Y + ++ S+ + D ++T+ + + Sbjct: 5 VQQYLDHLAVERGASKHTTASYRRDLGRYADFLRQRSVADLAQVTSAQVAEFLAWSRDPA 64 Query: 126 -RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 SSA + L+++R L ++AV + VA + V+ P+ + + + Sbjct: 65 GMGLAQSSAARGLSAVRGLHRFAVLEGMVAQDVAHGVKPPQPGRRLPKALPVDQVIAILE 124 Query: 185 F---------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIIT 234 + + E + +G R S++ + + S + K Sbjct: 125 ASGIADAESDVPRALRDQALLELMYCTGCRVSEAVGLNLADVDVPSRSARVLGKGDKERL 184 Query: 235 VELPDGFMKLLAMTPIGKETFFINN-------------DKQKMNATQFSIWFKAKATKAG 281 V L + + + F+ + + + A KAG Sbjct: 185 VPLGSAALAAVEAYLVRGRPAFLAQRAGKATNALFLNARGARFSRQSAWASLRHAAAKAG 244 Query: 282 V--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 V S H +R AT + GA + G +V + YT Sbjct: 245 VQAEISPHTLRHSCATHLLEGGADVRVVQELLGHASVVTTQIYT 288 >gi|300703191|ref|YP_003744793.1| site-specific tyrosine recombinase [Ralstonia solanacearum CFBP2957] gi|299070854|emb|CBJ42155.1| site-specific tyrosine recombinase [Ralstonia solanacearum CFBP2957] Length = 308 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 46/282 (16%), Positives = 85/282 (30%), Gaps = 24/282 (8%) Query: 73 WLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKH- 128 I + + LA N+ ++ + + + +R Sbjct: 17 EAIQRFCDALWLEDGLARNTLDAYRRDLTLYAQWLAGRGKAIDQTEDDDLADYFAARHEA 76 Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S+A + T + F+WA+R+ V +P + K+ + ++ ++ + Sbjct: 77 SRASTANRRRTVFKRFFQWALREHVVGADPSRLLSTAKQPPRIPKTLSEAQVEALIAAPD 136 Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGF 241 + + R E + SGLR S+ + N ++ V Sbjct: 137 VDTPLGLRDRAMIELMYASGLRVSEIVALKSVEVGLNEGVVRVIGGKGGKDRLVPFGAEA 196 Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289 L T F+ M F K A +A + S H + Sbjct: 197 GDWLRRYLRDGRTALLGKRTADALFVTARGDGMTRQAFWHLIKRYALRADIHAPLSPHTL 256 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 R AT + GA + G + + YT A R RL Sbjct: 257 RHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVA-RERL 297 >gi|330444894|ref|ZP_08308549.1| tyrosine recombinase XerC [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489204|dbj|GAA03046.1| tyrosine recombinase XerC [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 297 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 35/279 (12%), Positives = 93/279 (33%), Gaps = 22/279 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR---KITTKHIRSGV---ESRK 127 + + + L+++++ +++ +I + + ++ +R Sbjct: 5 LERFYEYLRSERELSLHTQQNYKRQLTRIAEQLVELKVESWQQVDAGWVRQIASKGMRDG 64 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 SS L+++R F + V Q + NP V P++ + ++M Q Sbjct: 65 LKASSLAMRLSALRSFFDFLVHQNVLKANPAKGVAAPRKSRPLPKNLDVDEMNQLLDVNE 124 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243 + + R E + +GLR S+ ++++ + ++ V + Sbjct: 125 DDPLAIRDRAMMELMYGAGLRLSELVGIDLRNISLSKGDLRVIGKGDKERIVPFSGLARE 184 Query: 244 LLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293 +A +++ +++ +++ K V + + H +R Sbjct: 185 WVAKWLKLRDSIAQADEQALFVSKLGHRISTRNVQKRMAEWGQKQAVSSHINPHKLRHSF 244 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 AT ++ + G + + YT D L Sbjct: 245 ATHMLESSGDLRAVQELLGHANLSTTQIYTH-LDFQHLA 282 >gi|325127525|gb|EGC50451.1| tyrosine recombinase XerC [Neisseria meningitidis N1568] gi|325133512|gb|EGC56175.1| tyrosine recombinase XerC [Neisseria meningitidis M13399] gi|325206779|gb|ADZ02232.1| tyrosine recombinase XerC [Neisseria meningitidis M04-240196] Length = 305 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 39/293 (13%), Positives = 88/293 (30%), Gaps = 30/293 (10%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGV 123 Y ++ + ++ ++ +++ + ++ + + + Sbjct: 6 FAAHFDAYLENIVREGKSEHTVAAYRRDLEELFALLAQMPSEAEGGVPQDLSRRDFTAAL 65 Query: 124 ESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + + L+S R W V + + +P ++ PK+ + +E + Sbjct: 66 RRLSQRGLNARTLARKLSSWRQYCVWLVERGLLHTDPAADIKPPKQPERVPKALPQEWLN 125 Query: 181 QFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIIT 234 + +G + FE + SGLR S+ + + + T K Sbjct: 126 RMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQ 185 Query: 235 VELPDGFMKLLAMTPIGKETFFIN---NDKQKMNATQFSIWFKAKATKA-----GVNKSA 286 V L ++ L ++T + K A A G + S Sbjct: 186 VPLTGKSVEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHVSP 245 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 H +R A A + G ++ + YTK L + R+ Sbjct: 246 HMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK------LDFDHIARL 292 >gi|330984816|gb|EGH82919.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. lachrymans str. M301315] Length = 290 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 37/285 (12%), Positives = 86/285 (30%), Gaps = 23/285 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR------SGVESRKHTPSSAIQFLT 138 ++ ++ ++ +++ I+ + + + S + L+ Sbjct: 7 RQVSPHTLEAYRRDLGKVLAYCQKAQLSSWNDLDIQHLRSFTARQHQQGQSSRSLARMLS 66 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194 ++R +K+ R+ +P + PK + + + Q E + + Sbjct: 67 AVRGFYKYLNREGICQHDPANGMSPPKGERRLPKTLDTDRTAQLLDGGVEDDFLAHRDQA 126 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLAMT----- 248 E L SGLR S+ + L K + + + L + Sbjct: 127 ILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVGSKARQALEIWLPLRA 186 Query: 249 --PIGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSATISADAGATAH 305 + F++ +++ + KA + G N H +R A+ ++ Sbjct: 187 LTNPQDDAVFVSQQGKRLGPRTIQVRLKAAGERELGQNLHPHMLRHSFASHLLESSQDLR 246 Query: 306 ELMATYGWKTVDQAETYTKGADRIRLG---IKNSRRISSVVDSDD 347 + G + + YT D L R +DD Sbjct: 247 AVQELLGHADIKTTQIYTH-LDFQHLATVYDSAHPRAKRKGAADD 290 >gi|309781409|ref|ZP_07676145.1| tyrosine recombinase XerD [Ralstonia sp. 5_7_47FAA] gi|308919822|gb|EFP65483.1| tyrosine recombinase XerD [Ralstonia sp. 5_7_47FAA] Length = 311 Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats. Identities = 51/301 (16%), Positives = 92/301 (30%), Gaps = 25/301 (8%) Query: 54 STPKREYINSPRKKPTTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSG--DFD 110 R+ +P P + I + + LA N+ ++ + Sbjct: 2 RKAARKDAEAPSLPPQS-ADAIQRFCDALWLEDGLARNTLDAYRRDLTLYAHWLAERNKS 60 Query: 111 YRKITTKHIRSGVESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168 + + +R SSA + T + F+WA+R+ V+ +P + K+ Sbjct: 61 IAETEDDDLADYFAARHAESRASSANRRRTVFKRFFQWALREHVVSTDPSRLLPTAKQPP 120 Query: 169 EGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIF 222 + ++ ++ + + R E + SGLR S+ + + Sbjct: 121 RFPKTLSETQVEALIDAPDVDTPLGLRDRAMIELMYASGLRVSEIVALKTVEVGLNEGVV 180 Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIW 272 + K G V L T F+ + M F Sbjct: 181 RVVGGKGGKDRLVPFGAEAGDWLRRYLRDGRTALLGERTADALFVTARGEGMTRQAFWYL 240 Query: 273 FKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 K A A + S H +R AT + GA + G + + YT A R R Sbjct: 241 IKRYALLADIHAPLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVA-RER 299 Query: 331 L 331 L Sbjct: 300 L 300 >gi|163745808|ref|ZP_02153167.1| site-specific tyrosine recombinase XerC [Oceanibulbus indolifex HEL-45] gi|161380553|gb|EDQ04963.1| site-specific tyrosine recombinase XerC [Oceanibulbus indolifex HEL-45] Length = 314 Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats. Identities = 39/289 (13%), Positives = 80/289 (27%), Gaps = 29/289 (10%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSG 122 + + + A N+ ++ + + G KIT +R+ Sbjct: 15 RDALQTWLTHQSALKGAAENTVTAYRGDVTEFLAFMTLHKGDTQGLGALAKITISDMRAW 74 Query: 123 VESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT---- 175 + + S + L++++ ++W +E L PK + + RP Sbjct: 75 MARMRSGGVGSRSVARKLSAVKAFYRWLAEREGFEPTAVLLTRSPKFQKKLPRPLAEDAA 134 Query: 176 ---KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 + ++ ++ L GLR S++ K G Sbjct: 135 RALIDCVETQARAPWVAARDVAVLTMLWGCGLRISEALALKGGDAPLPSSLRILGKGGKE 194 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKM-------NATQFSIWFKAKATKAGVNKS 285 V + + + A + + G+ + Sbjct: 195 RVVPVLPAARAAVEDYLAVCPHPQEPHAPLFRAIRGGALGARAVAQVMADARMQLGLPAT 254 Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R AT DAG + G ++ + YT D RL Sbjct: 255 ATPHAMRHSFATHLLDAGGDLRAIQELLGHASLSTTQAYT-AVDTARLM 302 >gi|83955532|ref|ZP_00964163.1| tyrosine recombinase XerD [Sulfitobacter sp. NAS-14.1] gi|83840176|gb|EAP79351.1| tyrosine recombinase XerD [Sulfitobacter sp. NAS-14.1] Length = 324 Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats. Identities = 50/308 (16%), Positives = 105/308 (34%), Gaps = 42/308 (13%) Query: 74 LISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKIT--TKHIRS---GVESRK 127 IS + ++ A N+++++ +T K I + +++ Sbjct: 8 WISTFLEAQAAELGAATNTQLAYGRDLKDFDSFLARRALDFVTVGRKDIEAYLVWCDAQG 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S+ + L++++ L+++A + + NP + + P + + +++++ Q Sbjct: 68 LAKSTRARRLSAIKQLYRFAFEEGWRTDNPAIQIAGPGQDKRLPKVLSEDEVDQLLDAAR 127 Query: 188 EG-------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD 239 + E L +G+R S+ V + + + K G V L D Sbjct: 128 HSGRNTSDQLRNTCLMELLYATGMRVSELVSLRVNAARGDPRLLLIMGKGGKERLVPLSD 187 Query: 240 GFMKLLAMTPIGKET----------------FFINNDKQKMNATQFSIWFKAKATKAGVN 283 + LA + ++ F + +F + K A AGV+ Sbjct: 188 PSREALAAWLVQRDNTDEAAQAKGKPASIYLFPSRGSAGYLTRHRFYLLIKEFALTAGVD 247 Query: 284 ---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 + H +R AT GA + G V E YT + R+S Sbjct: 248 PSKVTPHTLRHAFATHLLANGADLRAIQTMLGHADVATTEIYTHVLE---------ARLS 298 Query: 341 SVVDSDDP 348 +V + P Sbjct: 299 ELVLDNHP 306 >gi|134296744|ref|YP_001120479.1| site-specific tyrosine recombinase XerD [Burkholderia vietnamiensis G4] gi|134139901|gb|ABO55644.1| tyrosine recombinase XerD [Burkholderia vietnamiensis G4] Length = 320 Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats. Identities = 45/275 (16%), Positives = 86/275 (31%), Gaps = 26/275 (9%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSG---DFDYRKITTKHIRSGVESRKH-TPSSA 133 + + L+ N+ ++ + + + +R +S+ Sbjct: 40 WLEH----GLSRNTLDAYRRDLMLFSQWLAATHHAALDSADEAMVTGYIAARSDGKATSS 95 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--- 190 + L+ R + WAVR+ + +P L + K+ ++ ++ G+ Sbjct: 96 NRRLSVFRRYYGWAVREHRASADPTLRIASAKQGARFPSTLSEAQVEALLGAPDIGTPLG 155 Query: 191 -QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT 248 + R E + SGLR S+ + N ++ V + + Sbjct: 156 LRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGSKERLVPFGEVAHGWIERY 215 Query: 249 PIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296 F+ M QF K A +A V + S H +R AT Sbjct: 216 LRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQRADVRAHLSPHTLRHAFATH 275 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 + GA + G + + YT A R RL Sbjct: 276 LLNHGADLRVVQLLLGHSDISTTQIYTHVA-RERL 309 >gi|227510442|ref|ZP_03940491.1| site-specific recombinase XerD [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190094|gb|EEI70161.1| site-specific recombinase XerD [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 331 Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats. Identities = 38/304 (12%), Positives = 100/304 (32%), Gaps = 31/304 (10%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--------FDYRKITTKHIRSGVE 124 +Y +S + ++ ++++ + ++ + + + +G+ Sbjct: 29 DWFLKYLRSE--RHYSEDTVQAYQNDLTEFLKFLNETSKDHTSLIKIDSLDVESYLTGLY 86 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 +K+ +S Q ++++R + + ++ E + NP V + R + +MQ S Sbjct: 87 DKKYARNSIAQKVSALRSFYSFLIKNEVIKNNPFEYVHLKNQNRRLPRFFYPTEMQALFS 146 Query: 185 FWSEGSQPRL-----AFEFLLYSGLRCSDSCRAGVQHL-------------QNNIFSIKT 226 +G + E +G+R S+ ++ + + + Sbjct: 147 AAKKGERKLAFRNSAILEVFYSTGIRVSEGVTIQLKDIDLENQLILVTGKGRKQRYLPFG 206 Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284 + + L + L+ + FIN+ + + + ++ + N Sbjct: 207 KPAKQAVENYLKESREPLMTKYHQKHDYLFINHFGKPLTSRGIEYILDGIIKQSSLTTNI 266 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 H +R AT + GA + G ++ + YT + L + Sbjct: 267 HPHMLRHTFATEMLNNGADMRSVQELLGHSSLSTTQIYTHVT-KSHLMNDYQKYFPRNNQ 325 Query: 345 SDDP 348 S P Sbjct: 326 SLKP 329 >gi|326335596|ref|ZP_08201783.1| integrase/recombinase XerD [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692362|gb|EGD34314.1| integrase/recombinase XerD [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 297 Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats. Identities = 43/279 (15%), Positives = 97/279 (34%), Gaps = 25/279 (8%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRK----ITTKHIRSGVES 125 K L+ ++ ++ NS S+ +++ + I+ + +R + Sbjct: 2 WKKLLKDFEHYLKIERGMSENSVHSYLFDMEKLREFVAIHQIEETPVNISAETLRMFIYE 61 Query: 126 --RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 ++ S + +++++ FK+ + + Y P +++ PK + + E++ Sbjct: 62 VGKELHARSQSRLISALKSFFKFLLLENYREDFPMETIDTPKFGMKLPDTLSLEEIDAII 121 Query: 184 S----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK------------TQ 227 + EG + R E L GLR S+ + L + I+ Sbjct: 122 AGIDLSTEEGHRNRAIIETLYGCGLRVSELVNLHLSDLFFSEGFIRVLGKGNKQRLVPIS 181 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-- 285 + K + + + F+N +++ K A+ G+ K+ Sbjct: 182 EYTQKEINNYILHQRKNIPIVKEFSDIVFLNRRGKQLTRAMIFTIIKQAASAIGLTKTIS 241 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H R AT + GA + G +++ E YT Sbjct: 242 PHTFRHSFATHLLENGANLRAIQLMLGHESIITTEIYTH 280 >gi|295696106|ref|YP_003589344.1| integrase family protein [Bacillus tusciae DSM 2912] gi|295411708|gb|ADG06200.1| integrase family protein [Bacillus tusciae DSM 2912] Length = 304 Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats. Identities = 47/284 (16%), Positives = 89/284 (31%), Gaps = 28/284 (9%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHT 129 Y +S L+ + ++ Q++ G + +T IR + Sbjct: 13 EAFRVYLESE--RRLSPRTVRAYMGDVGQLLEWMQDQGIGGWDLLTPVRIRDFLAELWDR 70 Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 S + L++ R L+++ +R++ V +P V PK++ E++ + Sbjct: 71 GLSRRSVARMLSAYRTLYRFFLREDEVRESPLEPVATPKQEKRIPNFMDLEEVFHLLASP 130 Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGF 241 + + R E+L +G+R ++ V + K G V Sbjct: 131 DPNTALGQRDRALLEWLYATGVRVGEAVALRVGDVDMAGRRALIHGKGGKERYVLFGRSA 190 Query: 242 MKLLAMTPIGKETFFINNDKQKMNA------------TQFSIWFKAKATK-AGVNK-SAH 287 + L + + AG +K S H Sbjct: 191 ARALTRYLEVGWPALAGACPGPGDPVFLNYRGGALSDRSVRRIVDRHMARVAGYHKISPH 250 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +R AT DAGA + G ++ + YT R RL Sbjct: 251 VLRHTFATHLLDAGADLRAVQELLGHASLRSTQIYTHTT-RERL 293 >gi|261210165|ref|ZP_05924462.1| tyrosine recombinase XerC [Vibrio sp. RC341] gi|260840705|gb|EEX67254.1| tyrosine recombinase XerC [Vibrio sp. RC341] Length = 310 Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats. Identities = 38/283 (13%), Positives = 94/283 (33%), Gaps = 22/283 (7%) Query: 71 LKWLISEYRKSAH-WGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGV--- 123 L + + H L++ ++ +++ + + + + G ++ ++ +R V Sbjct: 13 LAQPLERFYTYLHTEKGLSLYTQRNYKQQLETMARYLAQMGLANWSQLDAGWVRQLVVLG 72 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + + SS L+S+R + + + + NP V P+++ + ++M Q Sbjct: 73 KRKGMKASSIATRLSSLRSFLDFLILRGELQANPAKGVSAPRKQRPLPKNLDVDEMAQLL 132 Query: 184 SFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPD 239 + + R E + SGLR ++ V+ + I+ V Sbjct: 133 EVTDDDPLSIRDRAIMELMYGSGLRLAELVSIDVKDINLRDGEIRVIGKGNKERKVWFAG 192 Query: 240 GFMKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKAGV--NKSAHGV 289 + + + + + +++ K V + S H + Sbjct: 193 QAQEWVGKWLKLRSQLADSGEPALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISPHKL 252 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 R AT ++ + G + + + YT D L Sbjct: 253 RHSFATHMLESSNNLRAVQELLGHENIATTQIYTH-LDFQHLA 294 >gi|219669732|ref|YP_002460167.1| integrase family protein [Desulfitobacterium hafniense DCB-2] gi|219539992|gb|ACL21731.1| integrase family protein [Desulfitobacterium hafniense DCB-2] Length = 298 Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats. Identities = 43/280 (15%), Positives = 95/280 (33%), Gaps = 22/280 (7%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQI----IRKSGDFD----YRKITTKHIRSGV 123 +S + + + ++ +++ Q R+ G+ ++ +RS + Sbjct: 4 DHALSLFDGHLKTQNRSQHTLMAYHKDLIQFFVFAARELGEEPEKVTVDQVDIYIVRSFL 63 Query: 124 ESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT----K 176 S + L+++R FK+ R+ + NP + PK + + Sbjct: 64 GEMTDRGLERKSMARKLSALRAFFKFLCREGILQKNPIQRIATPKLGRKLPHFLSLEELD 123 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-----TQKTGT 231 ++ G++ ++ E L SGLR S+ Q + ++ ++ Sbjct: 124 RLIRTPDCATLLGARDQVILELLYGSGLRVSELADLNRQDIDAGSSLLRVRGKGNKERIV 183 Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289 +T + + L M +E +N +++ A +AG+ + H + Sbjct: 184 PLTNYALEAARQYLEMREDKQEALLLNYQGTRLSVRSIRRILDGLALEAGLSQHLHPHML 243 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT D GA + G + + YT Sbjct: 244 RHSFATHLLDGGADLRSVQELLGHAKLSSTQIYTHLTKER 283 >gi|327441062|dbj|BAK17427.1| site-specific recombinase XerD [Solibacillus silvestris StLB046] Length = 299 Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats. Identities = 31/279 (11%), Positives = 85/279 (30%), Gaps = 24/279 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR---K 127 + ++ + + ++++ + S ++ G ++ H R V + Sbjct: 9 LDQFIRYVQLEKNFSLHTVREYTSDLEEFFAFLHAEGIQKIAEVEYIHARLYVTKLYDEQ 68 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +S + ++S+R F++ R++ + P S+ PK++ + +E++++ Sbjct: 69 KARTSISRKISSIRSFFRFLNREQNIDDAPFRSLYHPKKEERLPSFFYEEELKELFEKNE 128 Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 + E L +G+R S+ + + + ++ + Sbjct: 129 GDDPIQIRNMALLELLYATGMRVSECVSLELTDIDFHYNIVRVMGKGRKERIIPFGQYAH 188 Query: 243 KLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAGVNKS--AHGVR 290 L + + + A ++ H +R Sbjct: 189 DALIRYIKQVRPTLMKKENHQKVFVNMRGGELTTRGVRYILSEMIDNASMHTKIYPHMLR 248 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + GA + G + + YT Sbjct: 249 HTFATHLLNNGADMRTVQELLGHANLSSTQIYTHVTKEA 287 >gi|313623983|gb|EFR94082.1| tyrosine recombinase XerC [Listeria innocua FSL J1-023] Length = 300 Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats. Identities = 37/280 (13%), Positives = 91/280 (32%), Gaps = 26/280 (9%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHIRSGVE 124 L + H + + ++ ++E+ R + + + + + ++ Sbjct: 5 GQLEKRFLDYLHSERNYSEHTSTAYENDLSDFRRFLNEQAITEYQQVTFLDVRIYLTELK 64 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + + ++ + ++S+R + + +R+ + NP V K + + + E+M+ Sbjct: 65 QKSFSRTTVARKISSLRSFYTFLLRENVITENPFTYVSHAKNQLRLPKFFYSEEMEALFQ 124 Query: 185 FWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238 E + R+ E L +G+R S+ + L + +I K V Sbjct: 125 VVYEDNETLTLRDRVILEVLYGTGIRVSECAGIMLSDLDTSYQAILIRGKGNKERYVPFG 184 Query: 239 DGFMKLLAMT-----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285 + ++ IN+ + +KA + Sbjct: 185 AYAEDAITDYLSGRTELMTRFKKTHDSLLINHYGDPLTTRGIRYCLTKIISKASLTRKIH 244 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 H +R AT + GA + G ++ + YT Sbjct: 245 PHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHV 284 >gi|258616081|ref|ZP_05713851.1| phage integrase family site specific recombinase [Enterococcus faecium DO] gi|293563861|ref|ZP_06678293.1| phage integrase family protein [Enterococcus faecium E1162] gi|294623266|ref|ZP_06702131.1| phage integrase family protein [Enterococcus faecium U0317] gi|291597294|gb|EFF28480.1| phage integrase family protein [Enterococcus faecium U0317] gi|291604190|gb|EFF33692.1| phage integrase family protein [Enterococcus faecium E1162] Length = 361 Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats. Identities = 37/343 (10%), Positives = 95/343 (27%), Gaps = 41/343 (11%) Query: 29 HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA 88 G R ++ T A + + E T +K + + + +L Sbjct: 5 DGSRKKVEKVGGDTRPEAEAALRKVLSDIDETGQYFLGTDTRVKQYLDFWMEEYVKLNLK 64 Query: 89 VNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF---LTSMRVLF 144 N+ ++ I G ++ +++ + + S + ++ Sbjct: 65 YNTYENYRFTIKNHINGYLGKKKLTDLSPALLQNFINAEFKKGYSKKTMTITHSVLKNAL 124 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGI------RPWTKEDMQQFKSFWSEGSQPRLAFEF 198 AV + + + + + + ED EG + Sbjct: 125 NMAVYPWGLIKQNPMLYVKIPKYEARPTTKKDLKIISLEDFDHMLEITPEGHPFYIPLNI 184 Query: 199 LLYSGLRCSDSCRAGVQHLQNN----------------IFSIKTQKTGTIITVELPDGFM 242 Y+G+R + C + + + + + T+ + + Sbjct: 185 GFYTGMRVGEVCGLTWDDVDFSNGTITVEKQMVKNDGAWVYGTPKTSSSNRTIFIGQTLL 244 Query: 243 KLLAMTPIGKETFFINNDKQKM--------------NATQFSIWFKAKATKAGVNKSAHG 288 +L + + K + + + + ++ + H Sbjct: 245 AILKKHKKQQLENRMKYGKLYIDSNAVCTKEDGELVTPSVVKWNTRRISNALSLSFNFHS 304 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330 +R AT+ + GA E+ G + TY+ D++R Sbjct: 305 LRHTHATLLLENGAKMKEISERLGHSRISITMDTYSHVTDKMR 347 >gi|126728166|ref|ZP_01743982.1| site-specific tyrosine recombinase XerC [Sagittula stellata E-37] gi|126711131|gb|EBA10181.1| site-specific tyrosine recombinase XerC [Sagittula stellata E-37] Length = 308 Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats. Identities = 42/289 (14%), Positives = 95/289 (32%), Gaps = 29/289 (10%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSG 122 + ++++ A + N+ ++ + I G ++TT +R+ Sbjct: 10 RTALADWLDHAKALREASDNTITAYRADVIDFIAFLTQHHAEPQGLAPLARVTTSDMRAW 69 Query: 123 VESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + + T P S + L++++ ++W +E L+ PK + + RP ++E Sbjct: 70 MAHLRRTEIGPRSMARKLSAVKTFYRWLADREGFEPTAVLATRAPKFQKKLPRPLSEEAA 129 Query: 180 QQFKS-------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 + +G++ L GLR S++ +HL K Sbjct: 130 RAMIDTVEIQSTTSWQGARDAAVVTLLYGCGLRISEALSLTGRHLPLTDSLRIVGKGNKE 189 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINN-------DKQKMNATQFSIWFKAKATKAGVN-- 283 V + + + + +N + + + G+ Sbjct: 190 RVVPVLPVARRAVETYLSLCPFPPERDVALFRGARGGPLNPRLIAKVTEQARMQLGLPAT 249 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 + H +R AT AG + G ++ + YT D++ L Sbjct: 250 ATPHAMRHSFATHLLHAGGDLRAIQELLGHASLSTTQAYT-AVDQVHLM 297 >gi|315655289|ref|ZP_07908190.1| tyrosine recombinase XerD [Mobiluncus curtisii ATCC 51333] gi|315490544|gb|EFU80168.1| tyrosine recombinase XerD [Mobiluncus curtisii ATCC 51333] Length = 327 Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats. Identities = 47/283 (16%), Positives = 85/283 (30%), Gaps = 33/283 (11%) Query: 78 YRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR------- 126 Y + ++ ++ + I G ++T + S + Sbjct: 20 YLDYLAVERGASPHTVAAYTRDLRRYITFLVANGVNSLDEVTLPVLESFARALEAGFGDY 79 Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 PSSA + + S+R ++A V NP + K T E++Q Sbjct: 80 AAVAPSSARRAIASVRSWHRYAYETGAVRANPTKGIAPAKVGAHLPTVLTVEEVQTLLEA 139 Query: 186 -----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD- 239 + R EFL +G R S++ V + + + G L Sbjct: 140 ASATGDDNALRDRALLEFLYATGARISEAVNLAVDDIDLDEEIPLVRLFGKGRKERLSML 199 Query: 240 -------------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284 LA + F+N + ++ +A A +A + Sbjct: 200 GHLAKDALEAYLVRVRPRLAEKGRSQGRVFLNTLGRPLSRQSAWAIIQAVAQRAQITVPV 259 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 H +R AT GA + G +V + YTK + Sbjct: 260 GPHTLRHCFATHLLQGGADVRAVQELLGHASVTTTQIYTKVTN 302 >gi|241667911|ref|ZP_04755489.1| phage integrase family protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876451|ref|ZP_05249161.1| phage integrase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842472|gb|EET20886.1| phage integrase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 293 Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats. Identities = 39/266 (14%), Positives = 90/266 (33%), Gaps = 16/266 (6%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 I + + + + + + ++ Q+ D D K+ I V+ +S+ Sbjct: 7 IDNFLDNLLYLKNYSQETINNYRRDLLQLNSSIVDKDITKLENNDILMWVKKLHAQGNSS 66 Query: 134 I---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---SFWS 187 + L+S+R F + + E + NP ++ PK + + +++ + Sbjct: 67 KTLQRKLSSLRSFFNFLINSELIKNNPTTGIKAPKSSKKLPKAVNTDELAYLLDIKPSNN 126 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELP-------D 239 ++ F+ L G+R S+ ++ + N SI+ V + Sbjct: 127 IETRDIACFDLLYSCGIRLSELSSIELKDININQKSIRVIGKGNKERVVYFGSKTLINLN 186 Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSATISA 298 ++ + FI+ + + + + A K A + H +R AT Sbjct: 187 RWLNIRDTYSPKCNYLFISQNGEHLTNRSIQKRIEIFAKKYATKHIHPHMLRHSFATHVL 246 Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324 D+ + G + + YT Sbjct: 247 DSSKDLLAVKDLLGHADISSTQIYTH 272 >gi|317121809|ref|YP_004101812.1| integrase family protein [Thermaerobacter marianensis DSM 12885] gi|315591789|gb|ADU51085.1| integrase family protein [Thermaerobacter marianensis DSM 12885] Length = 336 Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats. Identities = 50/315 (15%), Positives = 99/315 (31%), Gaps = 36/315 (11%) Query: 52 TGSTPKREYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD 110 P+ E P ++ Y LAV + ++ + + G Sbjct: 3 ARGAPQPEGPGRPEAGGPPAADVVEAYLDHLRLERGLAVRTLEAYAADLAGWLDFLGLEP 62 Query: 111 ------YRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161 ++T + +R + S+ + L ++R LF++AVR+ ++ +P + Sbjct: 63 PVDAATLGRVTGRDLRRWLAQLDQRGLQRSTVARKLAAVRGLFRFAVREGWIPASPAARL 122 Query: 162 ERPKRKTEGIRPWTKEDMQQFK-----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216 P+ + R +T E+ + + R E L GLR + + Sbjct: 123 GTPRVRRRLPRVYTPEEARALLEAAGAGTGPAALRNRALLELLYGCGLRVGELSGLDLDD 182 Query: 217 LQNNIFSIKTQKTG-TIITVELPDGFMKLL------------------AMTPIGKETFFI 257 + ++ G + L L P ++ F+ Sbjct: 183 VDWEGGWLRVYGKGGKERILPLAGPVAAALRAYVEDGRPHLAAARGSRPCPPGDRQAVFL 242 Query: 258 NNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTV 316 N +++ + A A + H +R AT D GA + G ++ Sbjct: 243 NRWGGRLSPRSIQAIVRKAGAVVARLEAHPHLLRHTFATHLLDGGAGLRAVQELLGHASL 302 Query: 317 DQAETYTKGADRIRL 331 + YT R RL Sbjct: 303 AATQIYTH-VSRARL 316 >gi|221633040|ref|YP_002522265.1| tyrosine recombinase xerD [Thermomicrobium roseum DSM 5159] gi|221155467|gb|ACM04594.1| tyrosine recombinase xerD [Thermomicrobium roseum DSM 5159] Length = 331 Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats. Identities = 48/290 (16%), Positives = 105/290 (36%), Gaps = 25/290 (8%) Query: 64 PRKKPTTLKWLISEYRKSA-HWGSLAVNSRISFESYFDQII----RKSGDFDYRKITTKH 118 R + ++ I E+ L+ N+ ++ + +Q + G D+ ++ ++H Sbjct: 11 RRVEAGPMQQAIEEFLTGVVRERGLSPNTIAAYRNDLEQFANYVAERFGLRDWSELVSEH 70 Query: 119 IRS---GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 + + + R++ ++A + L +++ + VR + NP + P+ R Sbjct: 71 LEAFLGYLRDRQYAETTAARKLAAIKSFCHYLVRAGLIGANPADGLPVPRVGRFAPRAIG 130 Query: 176 KEDMQQFK-----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKT 229 ++++Q EG + R L +GLR S+ V+ + + I + Sbjct: 131 PKEVEQLIAAASSDRTPEGLRDRAMLITLATTGLRVSELTALDVRDVDLDRGELIVRRPN 190 Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATK 279 G V L ++ L F N+ ++ F + K A Sbjct: 191 GRERVVPLAREAIEALRDYLERGRPGFTTLKGEQALFLNHRGSRLTRQGFWLILKNYAAA 250 Query: 280 AGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 AG+ + H +R A + G +L G + + Y + +R Sbjct: 251 AGLPEVTPHTLRHSFAVRALVDGWDLRDLQRVLGHVSPATTQVYRQLLER 300 >gi|209521419|ref|ZP_03270129.1| tyrosine recombinase XerC [Burkholderia sp. H160] gi|209498137|gb|EDZ98282.1| tyrosine recombinase XerC [Burkholderia sp. H160] Length = 307 Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats. Identities = 43/294 (14%), Positives = 88/294 (29%), Gaps = 31/294 (10%) Query: 69 TTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127 T I+ Y L+ ++ + +++ + + +T IR V Sbjct: 1 MTAADPIAAYLSHLEHERRLSAHTLRGYTHELEELKQLAKGRPLESLTAVDIRGAVARAH 60 Query: 128 HTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 +A L++ R ++W + + NP +V PK+ + + +D + Sbjct: 61 AGGLTARSIGHRLSAWRAFYRWLAGRVELPANPVAAVRAPKQAKTLPKALSVDDAARLMD 120 Query: 185 FW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ------------K 228 EG + E SGLR ++ V+ + K Sbjct: 121 NPAADSPEGLRDHAMLELFYSSGLRLAELVGLDVRFADIDGHRSAGWLKLDAAEVEVLGK 180 Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKA 280 V + + L ++ ++ +++ K A A Sbjct: 181 GNRRRVVPVGSKAVAALNAWLGVRDQMVRHDPHPLFLSTRGNRLSPNVVRERVKRAALAA 240 Query: 281 GVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 G+ H +R AT + + G ++ + YT G D L Sbjct: 241 GIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYT-GLDFQHLA 293 >gi|29348151|ref|NP_811654.1| integrase, site-specific recombinase [Bacteroides thetaiotaomicron VPI-5482] gi|253569574|ref|ZP_04846984.1| integrase [Bacteroides sp. 1_1_6] gi|29340054|gb|AAO77848.1| integrase, site-specific recombinase [Bacteroides thetaiotaomicron VPI-5482] gi|251841593|gb|EES69674.1| integrase [Bacteroides sp. 1_1_6] Length = 293 Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats. Identities = 50/276 (18%), Positives = 100/276 (36%), Gaps = 24/276 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSGV---ES 125 LI + + + + + +++ Q+ G FD ++ + IR + Sbjct: 2 LIKSFLDYLRYERNYSEKTVLAYGEDIKQLQEFAQEEYGKFDPLEVEGELIREWIVSLMD 61 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 R +T +S + L+S+R +K+ +RQ V ++P + PK K + +M + Sbjct: 62 RGYTSTSVNRKLSSLRSFYKYLLRQGEVTVDPLRKITGPKNKKPLPAFLKESEMDKLLDD 121 Query: 186 W-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 +G + RL +G+R S+ + + + +K + Sbjct: 122 TDFGEGFKGCRDRLIIGVFYATGIRLSELIGLDDKDVDFSASLLKVTGKRNKQRLIPFGD 181 Query: 241 FMKLLAMTPIGKET---------FFINNDKQKMNATQFSIWFKA-KATKAGVNK-SAHGV 289 +K L + I FF+ D +++ K + A + K S H + Sbjct: 182 ELKELMLEYINVRNETIPERSEAFFVKEDGERLYKNLVYNLVKRNLSKVATLKKRSPHVL 241 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 R AT + A + G ++V E YT Sbjct: 242 RHTFATTMLNNDAELGAVKELLGHESVATTEIYTHA 277 >gi|190571372|ref|YP_001975730.1| site-specific recombinase, phage integrase family [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018771|ref|ZP_03334579.1| site-specific recombinase, phage integrase family [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357644|emb|CAQ55088.1| site-specific recombinase, phage integrase family [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995722|gb|EEB56362.1| site-specific recombinase, phage integrase family [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 328 Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats. Identities = 45/321 (14%), Positives = 101/321 (31%), Gaps = 47/321 (14%) Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLA-VNSRISFESYFDQIIRKS--GDFDYRKITT 116 P+ K L I+ Y + + N+ S+ S Q+ + G + Sbjct: 2 KNKQPQNKKENL--YITYYIDALVSEKSSTQNTLESYRSDLHQLEKFLLEGGTTLVGASK 59 Query: 117 KHIRSGVE----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV----ERPKRKT 168 +I+ V +K+ SS + +++++ +K + NP + PK Sbjct: 60 ANIKDYVNFLRTQKKYKTSSISRKISAIKNFYKCLFNDGIIDFNPAPANDNELRNPKVSR 119 Query: 169 EGIRPWTKEDMQQFK----------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218 + + +++ + + + L SG+R S+ + + Sbjct: 120 PLPKYLSVQEIFLLMETVKKSASGSNKEISSKRLCAILDILYSSGMRVSELINMKLCEVL 179 Query: 219 N-------NIFSIKTQKTGTIITVELPDGFMK-----------LLAMTPIGKETFFINND 260 + + I K+ + + ++ LL F + Sbjct: 180 HLVNGNGKEGYIIIKGKSSRERQILFNEQALQSLKNYLSIRDNLLPNNKKSDWLFPGDKP 239 Query: 261 KQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVD 317 + + + K A K ++ S H +R AT ++GA + G + Sbjct: 240 NKPITRQRVGQLIKELARKCDIDENKISPHVIRHSLATHLLNSGANIVLIQKILGHTNLS 299 Query: 318 QAETYTKGADRI---RLGIKN 335 + YT A+ +L + Sbjct: 300 TTQIYTHIANEKLKDKLADSH 320 >gi|167644692|ref|YP_001682355.1| integrase family protein [Caulobacter sp. K31] gi|167347122|gb|ABZ69857.1| integrase family protein [Caulobacter sp. K31] Length = 308 Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats. Identities = 49/306 (16%), Positives = 97/306 (31%), Gaps = 40/306 (13%) Query: 74 LISEYRKSAHWGSLAV-NSRISFESYFDQIIRKSGDF-DYRKITTKHIRSGVES---RKH 128 I + + A N+ ++E D + + I + R Sbjct: 8 WIDAFLEMMAVERAAARNTLTAYEKDLADARLFLASRGDLDGASAEAIEAYFADLGARGL 67 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE-----DMQQFK 183 +P++A + +++R +++ + + + +P VE PK + +++ Sbjct: 68 SPATAARRRSALRQFYRFVLGEGWRDDDPSRRVEAPKAGRPLPKVLSRDAVLRLIAAAAA 127 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFM 242 ++G + E L SGLR S+ + L + + K G L D Sbjct: 128 KDGAQGLRLACMIELLYASGLRISELLNLPLAALARDPAFLMVKGKGGKERLAPLNDAAR 187 Query: 243 KLLAMT-----------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 + F ++ A + S + A AG+++ Sbjct: 188 TAVKAYLEARPQFLPKGAPNGGVKDSPWLFPSRAKSGRLTARRVSQLLEDAAIAAGIDRQ 247 Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342 S H +R AT + GA + G + + YT A ++ V Sbjct: 248 TVSPHVLRHAFATHLLEGGADLRVIQTLLGHADIATTQIYTHVAG---------DHLAEV 298 Query: 343 VDSDDP 348 V S P Sbjct: 299 VKSKHP 304 >gi|126455125|ref|YP_001065195.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei 1106a] gi|167737435|ref|ZP_02410209.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei 14] gi|167823028|ref|ZP_02454499.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei 9] gi|167909818|ref|ZP_02496909.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei 112] gi|226192850|ref|ZP_03788463.1| tyrosine recombinase XerD [Burkholderia pseudomallei Pakistan 9] gi|242316366|ref|ZP_04815382.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1106b] gi|126228767|gb|ABN92307.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1106a] gi|225935100|gb|EEH31074.1| tyrosine recombinase XerD [Burkholderia pseudomallei Pakistan 9] gi|242139605|gb|EES26007.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1106b] Length = 333 Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats. Identities = 47/322 (14%), Positives = 91/322 (28%), Gaps = 35/322 (10%) Query: 44 IPAYMSALTGSTPKREYINSPRKKPTTLKWLIS--EYRKSAHW-----------GSLAVN 90 A + + + + L + + S L+ N Sbjct: 2 ARAVHACAADTAGGDAGRAPAQPADRPVDALAASPAWLDSRASIDLFCDAMWLEHGLSRN 61 Query: 91 SRISFESYFDQIIRKSGDFDYRKIT----TKHIRSGVESRKHTPSSAIQFLTSMRVLFKW 146 + ++ + + +S+ + L+ R + W Sbjct: 62 TLDAYRRDLQLFAQWLAARHAASVDHASEPTLTEYIAARSDGKATSSNRRLSVFRRYYGW 121 Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYS 202 AVR+ A++P L + K+ ++ ++ + + + R E + S Sbjct: 122 AVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALLAAPDVDTPLGLRDRTMLELMYAS 181 Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETF------ 255 GLR S+ + N ++ V + + Sbjct: 182 GLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVPFGEVAHGWIERYLRDARPALLGARA 241 Query: 256 ----FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMA 309 F+ M QF K A +A V + S H +R AT + GA + Sbjct: 242 ADALFVTARGDGMTRQQFWNIIKRHAQQADVRVHLSPHTLRHAFATHLLNHGADLRVVQL 301 Query: 310 TYGWKTVDQAETYTKGADRIRL 331 G + + YT A R RL Sbjct: 302 LLGHSDISTTQIYTHVA-RERL 322 >gi|254451180|ref|ZP_05064617.1| tyrosine recombinase XerD [Octadecabacter antarcticus 238] gi|198265586|gb|EDY89856.1| tyrosine recombinase XerD [Octadecabacter antarcticus 238] Length = 313 Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats. Identities = 42/286 (14%), Positives = 91/286 (31%), Gaps = 28/286 (9%) Query: 72 KWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS---GVESRK 127 I + ++ A N+++++ D + + H+ +++ Sbjct: 9 AHWIQAFLEAQAAELDAATNTQLAYARDLMDFSDWLADTHFAAVAQDHVEKYLIWCDAQG 68 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 ++ + L++++ LF++A + + NP + + P R + + ++ + Sbjct: 69 LAKATRARRLSAIKQLFRFAFEEGWRVDNPAIQISGPGRDKRLPKTLSHSEVDALLNAAR 128 Query: 188 EGSQPRL----AFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFM 242 + + L E L +G+R ++ V + + + K V L Sbjct: 129 DAKKDPLRTTCLMELLYATGMRVTELVSLPVSAARGDPRMLLVRGKGDKERMVPLSPPAR 188 Query: 243 KLLAMTPIGKETFFINNDKQ----------------KMNATQFSIWFKAKATKAGV---N 283 A+ ++ K + F K AT GV Sbjct: 189 AATAVWLKTRDKAEDATFKDGTPRSKFLFPSRGKLGHLTRQSFFNLIKDLATAGGVTRSK 248 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + H +R AT + GA + G V E YT D Sbjct: 249 VTPHTLRHAFATHLLEGGADLRSIQTLLGHVDVATTEIYTHVLDER 294 >gi|254246904|ref|ZP_04940225.1| Phage integrase [Burkholderia cenocepacia PC184] gi|124871680|gb|EAY63396.1| Phage integrase [Burkholderia cenocepacia PC184] Length = 355 Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats. Identities = 43/288 (14%), Positives = 89/288 (30%), Gaps = 31/288 (10%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS---GVESRKHTP 130 I+ Y + L+ ++ ++ D++ + + +T +R + + Sbjct: 55 IAAYLSNLKHVRQLSEHTLRAYTHELDELKKLAAGRPLDALTAADMRGAVVRGHAAGLSA 114 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 S L++ R ++W ++ + NP V PKR+ + + +D G+ Sbjct: 115 RSISHRLSAWRAFYRWFAQRVEMPANPVAGVRAPKREKSLPKALSVDDAVALMDAPLAGT 174 Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------GTIIT 234 + E SGLR ++ V++ Q + + Sbjct: 175 TESIRDHAILELFYSSGLRLAELVGLDVRYTQADGYRSAGWLDLAEAEVTVRGKGNKERK 234 Query: 235 VELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--K 284 V + + L F++ +M+ K A AG+ Sbjct: 235 VPVGSKAIDALNAWLAVRGEFVKHDPHPLFVSVRGNRMSPGVVRERVKRAALAAGIPANV 294 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R AT + + G +V + YT D L Sbjct: 295 HPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQIYT-SLDFQHLA 341 >gi|330994896|ref|ZP_08318818.1| Tyrosine recombinase xerC [Gluconacetobacter sp. SXCC-1] gi|329758157|gb|EGG74679.1| Tyrosine recombinase xerC [Gluconacetobacter sp. SXCC-1] Length = 291 Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats. Identities = 46/284 (16%), Positives = 95/284 (33%), Gaps = 16/284 (5%) Query: 52 TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY 111 P E +P+ L LI + + N+R ++ES + G Sbjct: 6 RAMPPTDEAQKAPQNSADNL--LIKTWL-----HNRGENTRRAYESDVRAFLAHVGKT-L 57 Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 ++T +++ +S ++ + L +++ L + E + + +V PK + Sbjct: 58 PEVTAPDLQNWFDSLTGADATRRRKLMAVKSLLSYGAAMEMLPRDVGPAVRIPKGRDSLH 117 Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 ++ + + R+ L +GLR S+ C + L+ G Sbjct: 118 ERILTQEQVRALIDGETDPRRRVMLRVLYATGLRISELCAVRWKDLKRRQQGGVAHVFGK 177 Query: 232 I------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-- 283 + L + + +D ++ K A +AG+ Sbjct: 178 GGKNRTVEIPAKVWKEIVALRVDSRPEAPMVPGHDGGPLSVDAVHRSVKRAAKRAGLPEQ 237 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 SAH +R A+ D GA AH + G ++ Y+ + Sbjct: 238 VSAHWLRHAYASHMQDNGAPAHVVQQQLGHTSLATTTRYSHARE 281 >gi|254483258|ref|ZP_05096490.1| tyrosine recombinase XerC [marine gamma proteobacterium HTCC2148] gi|214036481|gb|EEB77156.1| tyrosine recombinase XerC [marine gamma proteobacterium HTCC2148] Length = 304 Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats. Identities = 42/285 (14%), Positives = 92/285 (32%), Gaps = 24/285 (8%) Query: 71 LKWLISEYRKSAH-WGSLAVNSRISFESYF---DQIIRKSGDFDYRKITTKHIRSGVESR 126 L E+ L+ ++ +++ + + ++ IR+ V Sbjct: 5 LTDACKEFIDYLRDVRQLSPHTLENYQRDLASLQRYGEQIKKQTAAELDEADIRAWVSQL 64 Query: 127 KHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 SS + L++ R F + R NP +V+ P++ + + + + ++ Sbjct: 65 HRRGLAGSSIQRSLSAARSFFNYLSRINGHPRNPAAAVQAPRKPRKLPKTLDADQVDRYL 124 Query: 184 SFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPD 239 F + + E SGLR ++ + + T K TV + Sbjct: 125 MFEDDSPTALRDHAMAELFYSSGLRLAELNSVNINDIDRGSRLLTVTGKGNKTRTVPVGS 184 Query: 240 GFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287 +K + + F +N Q+++ K + KAG+ + H Sbjct: 185 AALKAIDKWLTVRPDIAADEDASVALFTSNRGQRISVRNIQARLKLQGRKAGMRQDVHPH 244 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 +R A+ ++ + G + + YT D L Sbjct: 245 MLRHSFASHMLESSGDLRAVQELLGHANISTTQIYTH-LDFQHLA 288 >gi|71897645|ref|ZP_00679890.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Ann-1] gi|71732548|gb|EAO34601.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Ann-1] Length = 277 Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats. Identities = 40/254 (15%), Positives = 86/254 (33%), Gaps = 17/254 (6%) Query: 88 AVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRKHTPSSAI---QFLTSMR 141 + ++ ++ +I G + + +++ V + SA + L++ R Sbjct: 2 SSHTLDAYRRDIGALIAWGGQQAVGEVVALDRAQLQAFVSAEHRRGLSAKSLQRRLSACR 61 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED---MQQFKSFWSEGSQPRLAFEF 198 + W V++ ++A+NP + PK + R ++ Q + G + R E Sbjct: 62 GFYTWLVKRGHIAVNPAAGLRAPKALRKLPRILDADEAVSFVQIPTDTPLGLRDRALLEL 121 Query: 199 LLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLAMTPIG-----K 252 SGLR S+ C L + K V + + L + Sbjct: 122 FYSSGLRLSELCGLRWDGLDLDAGLVSVLGKGSRQRVVPVGSYALSALREWCASSGGGAQ 181 Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMAT 310 + F ++A + K A + G+ + H +R A+ ++ + Sbjct: 182 QPVFPGRYGGPISARAVQVRIKQLAQRQGMAKHVHPHMLRHSFASHLLESSGDLRGVQEL 241 Query: 311 YGWKTVDQAETYTK 324 G + + YT Sbjct: 242 LGHADITTTQIYTH 255 >gi|262190134|ref|ZP_06048420.1| tyrosine recombinase XerC [Vibrio cholerae CT 5369-93] gi|262033988|gb|EEY52442.1| tyrosine recombinase XerC [Vibrio cholerae CT 5369-93] Length = 311 Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats. Identities = 40/303 (13%), Positives = 100/303 (33%), Gaps = 24/303 (7%) Query: 68 PTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRS-- 121 P L + + H L++ ++ +++ + + + G ++ ++ +R Sbjct: 10 PDALAQPLERFYAYLHTEKGLSLYTQRNYKQQLETMTQYLVQVGLSNWSQLDAAWVRQLV 69 Query: 122 -GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + + SS L+S+R + + + + NP V P+++ + ++M Sbjct: 70 MQGKRQGMKASSIATRLSSLRSFLDFLILRGELEANPAKGVSAPRKQRTLPKNLDVDEMA 129 Query: 181 QFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236 Q + + R E + +GLR ++ V+ + + I+ V Sbjct: 130 QLLEVTDDDPLSIRDRAIMELMYGAGLRLAELVSIDVKDVNLSEGEIRVIGKGNKERKVW 189 Query: 237 LPDGFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 + + + F++ +++ K V + S Sbjct: 190 FAGQAQEWVGKWLKLRSQLADSAETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISP 249 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG--IKNSRRISSVVD 344 H +R AT ++ + G + + + YT D L + + + Sbjct: 250 HKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTH-LDFQHLAQVYDQAHPRARKKN 308 Query: 345 SDD 347 DD Sbjct: 309 KDD 311 >gi|78777445|ref|YP_393760.1| Phage integrase [Sulfurimonas denitrificans DSM 1251] gi|78497985|gb|ABB44525.1| tyrosine recombinase XerD subunit [Sulfurimonas denitrificans DSM 1251] Length = 278 Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats. Identities = 35/259 (13%), Positives = 79/259 (30%), Gaps = 10/259 (3%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 + + + +L+ S ++ QI + + +K + + + K+ + Sbjct: 5 LEAFIEYISVIKALSRKSVDAYTCDLKQIELAL-NKPLISLDSKTLFNLLSEYKNK-RTL 62 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EG 189 + L+S+ F + + ++V V+ K + + + +Q S G Sbjct: 63 NRKLSSVNAFFDFCYKNQFVDEK--KKVKFSKIPKLLPKFLSYQQIQNALSQVDRSSVLG 120 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249 + FL +G R S+ + ++ I+ K V + + Sbjct: 121 LRDYAMIIFLYATGARISECLALRREDIEGEWLHIRHAKGEKERIVPIAFVAKTAVDAYM 180 Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMA 309 + I K + S H +R AT GA + Sbjct: 181 NELKKTKEYVWSNYKGEKLSRISAYKITQKY-LGVSPHVLRHSYATALIAGGADLRVVQE 239 Query: 310 TYGWKTVDQAETYTKGADR 328 G ++ + YT + Sbjct: 240 LLGHSSLLTTQIYTHIQKQ 258 >gi|237785754|ref|YP_002906459.1| integrase/recombinase [Corynebacterium kroppenstedtii DSM 44385] gi|237758666|gb|ACR17916.1| integrase/recombinase [Corynebacterium kroppenstedtii DSM 44385] Length = 327 Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats. Identities = 46/289 (15%), Positives = 90/289 (31%), Gaps = 31/289 (10%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE---SR 126 +I +Y + + N+ ++ + ++ G ++T HIR Sbjct: 31 WDGIIEDYLDFLTFTKGRSENTVKAYRNDLHSLVD--GLTTVDQLTLHHIRRWQADALRA 88 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 H SS + +++R +W + V +P + P+ R + + Sbjct: 89 GHARSSLSRRASAVRNFGRWLEHRGIVQSDPASRLSSPRPDKTLPRVLAADQTAEILHNL 148 Query: 187 SEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL 237 G + EF+ +G+R S+ CR + L ++ K V Sbjct: 149 EVGAEEEDPIALRDLAMVEFMYGTGVRVSELCRLNIGDLDFARQTVTILGKGNKQRVVPF 208 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQ--------------KMNATQFSIWFKAKA-TKAGV 282 + L N +++ Q T +G Sbjct: 209 GESAAHALKRWIDIGRPAIAANGHHKDADEAVFLGKRGGRIDPRQVRTVVHQATSTVSGG 268 Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 + S H +R +AT + GA + G ++ + YT D RL Sbjct: 269 DVSPHALRHSAATDVLEGGADLRVVQEMLGHASLATTQIYTH-VDSERL 316 >gi|126640334|ref|YP_001083318.1| site-specific tyrosine recombinase [Acinetobacter baumannii ATCC 17978] Length = 250 Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats. Identities = 40/236 (16%), Positives = 74/236 (31%), Gaps = 16/236 (6%) Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169 D+ + + +P S + L+++R +K+ Q+ + NP + PK Sbjct: 3 DWTSDDISDVLIELTKVGKSPRSIARCLSALRQFYKFLREQKLRSDNPVATHHSPKIGRA 62 Query: 170 GIRPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225 + ++ED++ G + R FE L GLR S+ ++ + ++ Sbjct: 63 LPKDLSEEDVEALIQAPDITTALGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGYLR 122 Query: 226 TQKT-GTIITVELPDGFMKLLAMTPIGKETFFIN---------NDKQKMNATQFSIWFKA 275 V L + M+ F K Sbjct: 123 ITGKGNKERLVPLGQYACDWVERYLNEARPQLYKSSTDYLFLTQHGGIMSRQNFWYAIKH 182 Query: 276 KATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 A +A + S H +R AT + GA + G + + YT A Sbjct: 183 YALQANIQAELSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR 238 >gi|328955348|ref|YP_004372681.1| integrase family protein [Coriobacterium glomerans PW2] gi|328455672|gb|AEB06866.1| integrase family protein [Coriobacterium glomerans PW2] Length = 314 Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats. Identities = 45/295 (15%), Positives = 95/295 (32%), Gaps = 28/295 (9%) Query: 64 PRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHI 119 R T + Y L+ N+ + I G I + Sbjct: 8 GRPADTQIARAADSYLSYLSVERGLSENTIAGYRRDLSSYIAFLLDEGIDRLDGIDRADV 67 Query: 120 RSGVESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + V +++ ++ +S + L++++ ++A+R+ +P S+ P+R+ + Sbjct: 68 EAFVCAKRDGGYSSASIERALSAVKGFHRFAIREGLTETHPTASLRLPRREDRLPAVISI 127 Query: 177 EDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGT 231 E + G++ R E L GLR S+ V+ L + K Sbjct: 128 EQARALLDQPFAPTAAGARDRATLEVLYGCGLRVSELIGLDVRDLHLDEEFLHALGKGSK 187 Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQ--------------KMNATQFSIWFKAKA 277 V + + G + + ++ +++ + Sbjct: 188 ERLVPITGTAAAAMEAYMSGPRSELAAHARRASPSPAVLLNKNGGRLSRQAVHACCERWG 247 Query: 278 TKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 AG++ H +R AT GA L G ++ + YT DR ++ Sbjct: 248 RIAGIDGLHPHTLRHSFATHMLAGGADLRVLQEILGHASITTTQLYTH-LDRAQI 301 >gi|307691932|ref|ZP_07634169.1| Phage integrase [Ruminococcaceae bacterium D16] Length = 540 Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats. Identities = 45/385 (11%), Positives = 107/385 (27%), Gaps = 43/385 (11%) Query: 1 MTPSLRLPPFVTKERTRHGKI--IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKR 58 M + ++R + G+ + T Sbjct: 1 MARKRKSGTGTIRQR-KDGRWEGRAVVGYDDKGLPKTKNVLAKTKHECQKKLTKLMETVG 59 Query: 59 EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTK 117 + + + ++ L ++ ++ES II + G ++T K Sbjct: 60 STKSEKICADMPFGEWMDFWYQTYIKSGLRPATQNTYESTIYQHIIPQLGKIPLCQLTQK 119 Query: 118 HIRSGVESRKHTPS--------------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163 ++ K A R AV++ + NP + + Sbjct: 120 DLQQFYAHLKKEGRLVRTEQYGKGLSDRMARMCHAKCRAALDQAVQENLIRSNPAVGCKL 179 Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223 P +++ ++ +++++Q+F L F L +GLR + L + + Sbjct: 180 PPKRSREMQVLSRQELQRFLIQAKADGYFEL-FLLDLSTGLRRGELLALQWSDLDLDTGT 238 Query: 224 IKTQKTGTIITVELP--------------------DGFMKLLAMTPIGKETFFINNDKQK 263 + K + ++ + F + N Sbjct: 239 LSVTKQVYEVNGKMQLSVPKTKASIRKLVLPPAVVEVFREYRKTAKSRWLFPSPKNLDMP 298 Query: 264 MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ET 321 + +AG + H +R AT++ + G L A G + + Sbjct: 299 LTPGSMLRRLHIILERAGCKQIRFHDLRHTFATMALENGMDIKTLSAMLGHVSAATTLDI 358 Query: 322 YTKGADRIRLGIKNSRRISSVVDSD 346 YT + + + +I + ++ Sbjct: 359 YTHITSD--MLSEAAAKIDRGLGNE 381 >gi|260592787|ref|ZP_05858245.1| tyrosine recombinase XerD [Prevotella veroralis F0319] gi|260535318|gb|EEX17935.1| tyrosine recombinase XerD [Prevotella veroralis F0319] Length = 292 Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats. Identities = 45/277 (16%), Positives = 94/277 (33%), Gaps = 25/277 (9%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRK 127 K L +Y K + + + + + R D + + + +R +E Sbjct: 2 KDLFLDYLKLE--RNYSPATVKHYRDDLKEFERFFQGLDQQLSWESVDSDIVRRWMEYMM 59 Query: 128 HTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ--- 181 SS + L+++R +++A+R+ V +P ++ P+RK + + +M Q Sbjct: 60 DKGNAASSVNRRLSALRSFYRYALRRNLVVKDPVHGIQGPRRKRPLPQFLKESEMDQLLD 119 Query: 182 --FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELP 238 + + R +G+R S+ + + T K + Sbjct: 120 ERMWTDSYKDVLARTIIVTFYETGVRISELIGLNDKDVDYINCEIKVTGKRDKQRIIPFG 179 Query: 239 DGFMKLLAMTPIGKET--------FFINNDKQKMNATQFSIWFKAKATKAG--VNKSAHG 288 D +K L ++ FF +++ Q K +K +S H Sbjct: 180 DELLKTLTAYQQQRDVETESESVAFFRTEKGKRVTDEQVRQMVKINLSKVSTLKKRSPHV 239 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 +R AT + A + G +++ E YT Sbjct: 240 LRHTFATAMLNHDAGLESVKELLGHESLSTTEIYTHT 276 >gi|325289988|ref|YP_004266169.1| tyrosine recombinase XerD subunit [Syntrophobotulus glycolicus DSM 8271] gi|324965389|gb|ADY56168.1| tyrosine recombinase XerD subunit [Syntrophobotulus glycolicus DSM 8271] Length = 315 Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats. Identities = 37/301 (12%), Positives = 90/301 (29%), Gaps = 35/301 (11%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI-----RSGVES 125 + ++ +Y L+ N+ S+ +++ + + + V Sbjct: 3 EQVLDDYINYLKIERGLSGNTCQSYRRDLKKLLIYLEENQNNLFQCQPVDLFSFLYSVNE 62 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + + S ++ +++ F + + +P + PK + ++ + + Sbjct: 63 QGISARSIARYTAALKGFFSYLSDEGKRTDDPTELIVVPKLEQPLPHVLSESAVNSLINH 122 Query: 186 ---------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITV 235 + E L SGLR S+ + + + ++ + V Sbjct: 123 RDDKESQAGMLLEIRDTAILEVLYGSGLRVSELITLSLNQISLEVGYVRCRGKGNKERIV 182 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMN----------------ATQFSIWFKAKA-- 277 L + + L + + +++ K +A Sbjct: 183 PLSEPCLLALQKYLLEARNHLLRKNRKPTTAESNSLFLNARGGRLTRQGIWTILKNRAVK 242 Query: 278 TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNS 336 KAG H +R AT D GA + G + + YT +R+R + + Sbjct: 243 NKAGAKIYPHLMRHCFATHLLDHGADLRSVQEMLGHADISTTQIYTHLTKNRLRDVFEKA 302 Query: 337 R 337 Sbjct: 303 H 303 >gi|294340803|emb|CAZ89198.1| putative XerD or XerC integrase [Thiomonas sp. 3As] Length = 340 Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats. Identities = 47/311 (15%), Positives = 96/311 (30%), Gaps = 49/311 (15%) Query: 70 TLKWLISEYRKSAH-WGSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVES 125 TL+ L ++Y A LA + +++ D ++ G + + + + + Sbjct: 17 TLRQLAADYLAHAQTERRLAEGTLVNYRRDLDDLLQRAEALGAAPIESLHIRRWAAQLHA 76 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT---------- 175 +P + L++ R F+W R +VA NP V PK + + Sbjct: 77 GGMSPRAIAARLSAWRSFFRWMGRLGFVAANPVQDVRAPKAAKPLPKALSVDQAVALAAY 136 Query: 176 -----------KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCR--------AGVQH 216 Q + F + G++ E L GLR S+ A Sbjct: 137 TPQESTPASHPHRRPHQAEPFATRGARVHAIAELLYSCGLRVSELTGLDVRASKTARGWI 196 Query: 217 LQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN-------------DKQK 263 + + T K +V + + L + + + Sbjct: 197 DWDAAEATVTGKGNKRRSVPIGRPALLALRQWLEQRPALLRCDADADAQVALFLGARGAR 256 Query: 264 MNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321 + + + + A AG++ H +R A+ + + G ++ + Sbjct: 257 LTPQRVWLELREHARAAGLDARVHPHMLRHSFASHVLQSSGDLRAVQELLGHSSIATTQV 316 Query: 322 YTKGADRIRLG 332 YT+ D L Sbjct: 317 YTR-LDFQHLA 326 >gi|294141273|ref|YP_003557251.1| site-specific recombinase, phage integrase family [Shewanella violacea DSS12] gi|294141423|ref|YP_003557401.1| site-specific recombinase, phage integrase family [Shewanella violacea DSS12] gi|293327742|dbj|BAJ02473.1| site-specific recombinase, phage integrase family [Shewanella violacea DSS12] gi|293327892|dbj|BAJ02623.1| site-specific recombinase, phage integrase family [Shewanella violacea DSS12] Length = 296 Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats. Identities = 37/283 (13%), Positives = 89/283 (31%), Gaps = 19/283 (6%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KH 128 +L ++ + + ++ +I D +TT ++ S H Sbjct: 9 FDFLYEQHLTNLTLQGKRPATIDAYSRAVRRIAAFF-DCCPDNLTTDDLKRYFASLIDSH 67 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + S+ ++ +++ + + +N P + T ++ S + Sbjct: 68 SWSTVKLDRNGLQFFYRYVLNHSWEWLNIVK----PPQVQRLPDILTPCEVAIVISLTRQ 123 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLA 246 + ++ F L GLR ++ V + Q I+ K G V LP ++ L Sbjct: 124 -LRYQVCFLTLYSMGLRLGEAISLRVGDIDSQIMQVHIRNAKGGKDRLVPLPKRTLQALR 182 Query: 247 MTPIGKETFFINNDKQKMNATQ------FSIWFKAKATKAGVNKS--AHGVRKFSATISA 298 + K + ++KS H +R AT Sbjct: 183 YYWKTHHHPRYLFPGKDSQPDSLIDKGGIQKALKRVIGECNIHKSISPHNLRHSYATHLL 242 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSRRIS 340 + G + + G +++ YT+ + ++ +++ Sbjct: 243 EQGLDLRSVQSLLGHNSLNTTARYTRLTQITRKNTVEAINQLA 285 >gi|90414248|ref|ZP_01222228.1| tyrosine recombinase [Photobacterium profundum 3TCK] gi|90324695|gb|EAS41236.1| tyrosine recombinase [Photobacterium profundum 3TCK] Length = 304 Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats. Identities = 44/280 (15%), Positives = 95/280 (33%), Gaps = 23/280 (8%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESR 126 L EY +S L+++++ +++ I + F+ T + I S Sbjct: 13 QLFYEYIRSE--RELSLHTQQNYKRQLSTIAEQLVSFEVTDWTMVDAGWVRQIASKGMRD 70 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 SS L+++R F + V+++ + NP V P++ + ++M Q S Sbjct: 71 GLKASSISMRLSALRSFFDFLVQKDILKANPAKGVAAPRKARPLPKNLDVDEMDQLLSVN 130 Query: 187 SEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 + + R E + +GLR ++ V+ + + I+ V Sbjct: 131 EDDPLSIRDRAMMELMYGAGLRLAELVSLNVRDISLSKGDIRVIGKGDKERIVPFAGLAR 190 Query: 243 KLLAMTPI--------GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKF 292 + +A + F++ +++ K V + + H +R Sbjct: 191 EWVANWLKVRGSLASGDESGLFVSKLGTRISTRNVQKRMAEWGQKQAVSSHINPHKLRHS 250 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 AT ++ + G + + YT D L Sbjct: 251 FATHMLESSGDLRAVQELLGHANLSTTQIYTH-LDFQHLA 289 >gi|330444332|ref|YP_004377318.1| site-specific recombinase, phage integrase family [Chlamydophila pecorum E58] gi|328807442|gb|AEB41615.1| site-specific recombinase, phage integrase family [Chlamydophila pecorum E58] Length = 312 Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats. Identities = 42/293 (14%), Positives = 97/293 (33%), Gaps = 40/293 (13%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSG---------------------DFDYRKITT 116 + S S+++++ ++ F + D +T Sbjct: 8 FLDSLKAKSVSLHTLRNYSIDFSKFKEFIETHKQLPTTPKITLHMKFQETSDLPLSLLTK 67 Query: 117 KHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 IR + + + + L++++ ++ ++ + + +P +++ PK E P Sbjct: 68 DLIRLYISYLIEQGKSKRTIKRRLSTLKSFSRYCLKMQLLFEDPTENIQGPKLPKELPSP 127 Query: 174 WTKED----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229 + E M G + R E SGLR S+ Q + I+ Sbjct: 128 ISYEQVEILMTMPDVSKYTGLRDRCLLELFYSSGLRLSEITAINRQDIDFEAALIRIFGK 187 Query: 230 -GTIITVELPDGFMKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWFKAKATK 279 + + ++ L E I D Q +++ F+ Sbjct: 188 GKKERVLPVTPCAIRWLHHYLYHSERMSIQKDTQAFFLNRFGTRISPRSIDRKFQHYLQL 247 Query: 280 AGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 +G+ N + H +R AT + G + A G +++ YT+ + +++ Sbjct: 248 SGLTGNITPHTIRHTIATHWLENGMDLKTIQALLGHSSLETTTIYTQVSIKLK 300 >gi|37528455|ref|NP_931800.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787893|emb|CAE17010.1| integrase/recombinase [Photorhabdus luminescens subsp. laumondii TTO1] Length = 303 Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats. Identities = 44/270 (16%), Positives = 93/270 (34%), Gaps = 20/270 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRS-GVESRKHT 129 I + + L+ + + + + + G ++ + +R SR+ Sbjct: 12 IEAFLRYLRVERRLSPVTITHYRRHLATLAEMVLEMGVSQWQDLDPAKVRMLVTRSRRAG 71 Query: 130 PSSAIQ--FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 SA L+S+R W V Q +++NP +V P K + +++ Q + Sbjct: 72 LQSANLALRLSSLRSFLDWQVIQGEISVNPSKTVSTPGTKRHLPKNIDVDEVNQLLNINF 131 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243 + R E + +GLR S+ QHL + + K V L ++ Sbjct: 132 NDPLSVRDRTMLEVMYGAGLRLSELVGLDCQHLDLESGEVWVSGKGSKERKVPLGHTAVE 191 Query: 244 LLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 L +E F ++ ++++ F + G+ + H +R A Sbjct: 192 WLNRWLAMRELFEPEDNAVFVSKRGRRISTRNVQKRFAQWGIRQGMSSHIHPHKLRHSFA 251 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324 T ++ + G ++ + YT Sbjct: 252 THILESSGDLRAVQELLGHASLSSTQIYTH 281 >gi|307300528|ref|ZP_07580308.1| tyrosine recombinase XerD [Sinorhizobium meliloti BL225C] gi|306904694|gb|EFN35278.1| tyrosine recombinase XerD [Sinorhizobium meliloti BL225C] Length = 311 Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats. Identities = 41/287 (14%), Positives = 87/287 (30%), Gaps = 29/287 (10%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGVES 125 + + + A N+ S+E + G D + S + Sbjct: 6 AAYVEAFLEMMSAERGAAANTLQSYERDLEDARSFLRSRGTGLTDASADDLRSYLSHLAG 65 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + SS + L+++R +K+ + +P ++ PK+ + + ED+ + Sbjct: 66 QGFKASSQARRLSALRQFYKFLYAEGLRTDDPTGILDAPKKARTLPKTLSIEDVTRLIGQ 125 Query: 186 -----------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTII 233 + E L +G+R S+ L N I K Sbjct: 126 AEAEAKSGSDDVMAKLRMHALIELLYATGMRVSELVSLPASVLAQNGRFLIIRGKGNKER 185 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMN--------ATQFSIWFKAKATKAGVNKS 285 V L ++ + + ++ + F+ K+ A +AG+ + Sbjct: 186 LVPLSQAAIRAMRAYGEALQEESADSPWLFPSNGKSGHLPRQVFARDLKSLAARAGIRVA 245 Query: 286 ---AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 H +R A+ GA + G + + YT + Sbjct: 246 AIWPHVLRHAFASHLLANGADLRAVQELLGHSDISTTQIYTHVLEER 292 >gi|325141563|gb|EGC64029.1| tyrosine recombinase XerC [Neisseria meningitidis 961-5945] gi|325197634|gb|ADY93090.1| tyrosine recombinase XerC [Neisseria meningitidis G2136] Length = 305 Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats. Identities = 39/293 (13%), Positives = 89/293 (30%), Gaps = 30/293 (10%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGV 123 Y ++ + ++ ++ +++ + ++ + + + Sbjct: 6 FAAHFDAYLENIVREGKSEHTVAAYRRDLEELFALLAQMPSEDAGGVPQDLSRRDFTAAL 65 Query: 124 ESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + + L+S R W V + + +P ++ PK+ + ++E + Sbjct: 66 RRLSQRGLNARTLARKLSSWRQYCVWLVERGLLHTDPTADIKPPKQPERVPKALSQEWLN 125 Query: 181 QFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIIT 234 + +G + FE + SGLR S+ + + + T K Sbjct: 126 RMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQ 185 Query: 235 VELPDGFMKLLAMTPIGKETFFIN---NDKQKMNATQFSIWFKAKATKA-----GVNKSA 286 V L ++ L ++T + K A A G + S Sbjct: 186 VPLTGKSVEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHVSP 245 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 H +R A A + G ++ + YTK L + R+ Sbjct: 246 HMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK------LDFDHIARL 292 >gi|297527277|ref|YP_003669301.1| integrase family protein [Staphylothermus hellenicus DSM 12710] gi|297256193|gb|ADI32402.1| integrase family protein [Staphylothermus hellenicus DSM 12710] Length = 333 Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats. Identities = 35/272 (12%), Positives = 76/272 (27%), Gaps = 28/272 (10%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----- 126 K ++ E+ + + ++ ++ S + G+ R ++ + I R Sbjct: 20 KDILEEFIFALEAAGASEDTVRAYRSAIKDFLEFLGEKPLRNVSLRDIILWRNHRLKNGF 79 Query: 127 -------KHTPSSAIQFLTS-MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 K + + + + + F W + + + IR Sbjct: 80 SKAKTRDKKKWQTTLHYYSMFLNRFFNWLGLNIRIPRIRKPPRKIHVLNDDEIRKL---- 135 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVE 236 +L LL +GLR + V + +I K V Sbjct: 136 -----LKSIRDPLDKLILFILLDTGLRSKELLGIRVSDIDFENRTITVTSTKYDKERKVL 190 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFS 293 + ++L+ K + + + K +AG+ H +R Sbjct: 191 VTSRTIELIRSWIELKNLGKEDRLI-PLTYSGLYKRIKRLGKRAGIPVWKIRPHILRHTF 249 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKG 325 AT + G + L G + + Y Sbjct: 250 ATQALKKGLSLPYLQRLLGHSDIKTTQVYLHV 281 >gi|225351391|ref|ZP_03742414.1| hypothetical protein BIFPSEUDO_02985 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157735|gb|EEG71018.1| hypothetical protein BIFPSEUDO_02985 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 317 Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats. Identities = 38/298 (12%), Positives = 90/298 (30%), Gaps = 42/298 (14%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD---YRKITTKHIRSGV--- 123 + I ++ L+ + ++ + + + D +TT+ + + Sbjct: 4 FERTIRQFLAHIDVERGLSKATVSAYGADLKKYRQWLADQGVGGIAAVTTQDVERYIVFL 63 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + + S + L S+ L ++AV + V + V+ PK + T +++ + Sbjct: 64 DESGESSRSKARRLASIHALHRFAVNEHIVVDDVSAQVKAPKGVSTLPDVLTVDEVARLL 123 Query: 184 SFWSEG------------------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225 + + EF+ G R S++C A + + + + Sbjct: 124 DSIPVSQNREHDGVVSEFPDDPVMLRDKALLEFMYAIGARVSEACGANLDDVDVDGRIAR 183 Query: 226 -TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--------------NATQFS 270 K V + + + + K + + Sbjct: 184 LMGKGSKQRLVPVGSYACEAIIRYLHAGRPKLESKSKGPVERRALFLNKRGKRLSRQSVW 243 Query: 271 IWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 + +A ++K H +R AT GA + G +V + YT + Sbjct: 244 EIIRGAGERAHIDKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHIS 301 >gi|212633304|ref|YP_002309829.1| Phage integrase:Phage integrase,SAM-like protein [Shewanella piezotolerans WP3] gi|212554788|gb|ACJ27242.1| Phage integrase:Phage integrase,SAM-like protein [Shewanella piezotolerans WP3] Length = 304 Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats. Identities = 34/275 (12%), Positives = 88/275 (32%), Gaps = 20/275 (7%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESRKH---TP 130 Y + ++ + ++ ++ + D+ ++ + +++ + +P Sbjct: 16 FERYLTTE--RQVSAYTVRNYLFELKRVEAVFAANDDWLELKHESLQAIIAKLHRKGLSP 73 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 S L+S++ F + +R++ +++NP L++ PK+ + + + + Sbjct: 74 RSLSLTLSSIKQFFDFLLREQQISVNPALNLSAPKQAKPLPKNMDVDSVTHLLEIDANDP 133 Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFMKLLA 246 + + E SGLR ++ V ++ + K V + + ++ Sbjct: 134 LSYRDKAIMELFYSSGLRLAELAALNVTDIKFSQAQVKVMGKGSKERIVPIGKLALTAIS 193 Query: 247 MTPIGKETFFINNDKQKMN-------ATQFSIWFKAKAT--KAGVNKSAHGVRKFSATIS 297 K +D + V H +R AT Sbjct: 194 QWLDIKRDIPCEDDALFVTAKGRRLAHRSIQARLAKWGQEQALSVKVHPHKLRHSFATHM 253 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 ++ A + G + + YT D L Sbjct: 254 LESSADLRAVQELLGHANLSTTQVYT-SLDFQHLA 287 >gi|153004979|ref|YP_001379304.1| tyrosine recombinase XerD [Anaeromyxobacter sp. Fw109-5] gi|152028552|gb|ABS26320.1| tyrosine recombinase XerD [Anaeromyxobacter sp. Fw109-5] Length = 298 Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats. Identities = 41/279 (14%), Positives = 95/279 (34%), Gaps = 24/279 (8%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVE-- 124 L+ + + LA NS + + + G + ++ I++ + Sbjct: 4 LEPALDLFVAHVRVEKGLAENSVEGYLRDLRRYVEHLDALGIGAWERVGRIEIQAHLGEL 63 Query: 125 -SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 R +P S + L+++R L + ++ ++ ++ P+ + + +++ + Sbjct: 64 VRRGLSPRSQARALSAIRSLHRLLFAEKLTPVDAGDELDAPRPGRKLPELLSHDEIARLL 123 Query: 184 ----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELP 238 + G + R E L +GLR S+ G+ + + + V + Sbjct: 124 ASPDPRSAAGLRDRAMLELLYATGLRVSELVSLGLNDVNLETRVLVARGKGNKERIVPVG 183 Query: 239 DGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286 + + + F++ ++ F+ A AG+ + S Sbjct: 184 APAAEAVKAYLAVGRERLLRGRRSKDLFVSPRGGRLTRQGFAKLLGRHARAAGIRRRISP 243 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 H +R AT + GA + A G V + YT Sbjct: 244 HKLRHSFATHLLEGGADLRAVQAMLGHADVSTTQIYTHV 282 >gi|291561258|emb|CBL40057.1| tyrosine recombinase XerD subunit [butyrate-producing bacterium SS3/4] Length = 284 Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats. Identities = 43/266 (16%), Positives = 88/266 (33%), Gaps = 22/266 (8%) Query: 83 HWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGV---ESRKHTPSSAIQF 136 + N+ +S++ ++ G D K+T + S + E S+ + Sbjct: 3 EEKHASKNTTLSYQRDLLKMADYLEENGITDCGKVTKTALNSYILFLEKEGKAASTVSRA 62 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQP 192 L S R F W ++ + +P S+ PK + + T +++ + + + Sbjct: 63 LASTRSFFGWLFKEGRIRRDPADSMHAPKIEKKVPVILTVDEVTKLLEQPSGANPKEIRD 122 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252 + E L +G+R ++ + + +I I + + LA Sbjct: 123 KAMLELLYATGIRVTELVNLKLSDVNMSIGFITCRDEHKERMIPFGHAAKDALAKYLESA 182 Query: 253 ETFF----------INNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300 F N + M+ F K +AG+ + + H +R A Sbjct: 183 SETFLKGTRSELLFTNYSGRAMSRQGFWKIIKYYGERAGIEEDITPHTLRHSFAAHLLSN 242 Query: 301 GATAHELMATYGWKTVDQAETYTKGA 326 GA + G + + YT A Sbjct: 243 GADMRAVQTMMGHSDLASTQMYTAYA 268 >gi|253997561|ref|YP_003049625.1| tyrosine recombinase XerC [Methylotenera mobilis JLW8] gi|253984240|gb|ACT49098.1| tyrosine recombinase XerC [Methylotenera mobilis JLW8] Length = 293 Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats. Identities = 41/278 (14%), Positives = 84/278 (30%), Gaps = 21/278 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TP 130 + Y + + L+ + I++ + + D + I+ IR + + Sbjct: 4 LDAYIQHLTFERGLSQLTCINYRRDISLLESLAEAADLQTISHAQIRRFIGKLHARELSS 63 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 S + L++ R + + + NP + PK + + + F G+ Sbjct: 64 KSIARALSAWRGFYDYLIHHHGYTQNPVHGLRAPKAAKTLPQALSVDQAVNFVDIQGGGT 123 Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQN-----------NIFSIKTQKTGTIITVE 236 + E SGLR ++ + L N I + ++ Sbjct: 124 LDLRDHAILELFYSSGLRLAELVNLDIDRLDFTDGTVEVIGKGNKTRIVPLGSHAAEAMQ 183 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSA 294 L+ K+ FI +++ KA A K G + H +R A Sbjct: 184 KWLQARALIPTAETNKQAVFITQQGKRITPRAVQYRVKAWAIKQGADSNLHPHMLRHSFA 243 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 + + + G + + YT D L Sbjct: 244 SHVLQSSQDLRAVQEMLGHANISTTQVYTH-LDFQHLA 280 >gi|325917722|ref|ZP_08179910.1| tyrosine recombinase XerD subunit [Xanthomonas vesicatoria ATCC 35937] gi|325536051|gb|EGD07859.1| tyrosine recombinase XerD subunit [Xanthomonas vesicatoria ATCC 35937] Length = 337 Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats. Identities = 42/287 (14%), Positives = 87/287 (30%), Gaps = 30/287 (10%) Query: 72 KWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGVES 125 I + +A + S+ + + R G + Sbjct: 38 AAAIERFLDRLWAEQGVARQTLDSYRRDLEGLARWRDGAGGGLLGIDRSVLFDYLRWRTE 97 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 +++P S + L+++R + +R + +P ++ P+ + T+ + + Sbjct: 98 ARYSPRSNARLLSTLRAFYGLCLRDGVRSDDPTALLDPPRLPRSLPKALTETQIDALLAA 157 Query: 186 WSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDG 240 G + R E + +GLR S+ + ++ V L + Sbjct: 158 PDIQTPLGLRDRAMLELMYAAGLRVSELVNLPAVGVNLRQGVLRVTGKGSKERLVPLGEE 217 Query: 241 FMKLLAMTPIGKETFFINND----------------KQKMNATQFSIWFKAKATKAGVN- 283 L ++ +Q + F K A AG++ Sbjct: 218 SQHWLERYLHEARPLLADHKAVAAVDGQVPLFIDAARQPPSRQHFWALVKRYAAVAGIDP 277 Query: 284 --KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 S HG+R AT + GA L G ++ + YT A + Sbjct: 278 ATVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQ 324 >gi|291515062|emb|CBK64272.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301] Length = 300 Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats. Identities = 47/275 (17%), Positives = 94/275 (34%), Gaps = 29/275 (10%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR----KITTKHIRSGVESRKHTPS- 131 Y ++ + + ++ +Q + G D R +ITT IR + R T Sbjct: 7 RYLEAE--RRYSPLTVRNYRHDVEQFLAWLGVDDARFEPQRITTDDIREWILYRTETGRV 64 Query: 132 ---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM------QQF 182 S + ++S+R LF+W +R V + + + + M + Sbjct: 65 SAASMNREISSLRALFRWLLRTGAVGRDVVHPIPSLRTSQRLPAFVPESRMNGIVSECEC 124 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 S + L L GLR ++ + S++ + V + + Sbjct: 125 DSEDFVRERNSLIILLLYTCGLRLAELVGIDRDDFSADFSSLRIRGKGDKERIVPMLEFV 184 Query: 242 MKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289 + + E I + ++++ T + + +AGV KS H + Sbjct: 185 REKILHYIGLIERQNICISSEKALFLTHKGKRISRTAVYRTVQEELDRAGVQGKKSPHVL 244 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT ++GA E+ G ++ + YT Sbjct: 245 RHTFATHLLNSGADMREIQELLGHASLQATQVYTH 279 >gi|190572731|ref|YP_001970576.1| site-specific tyrosine recombinase XerD [Stenotrophomonas maltophilia K279a] gi|190010653|emb|CAQ44262.1| putative integrase/recombinase [Stenotrophomonas maltophilia K279a] Length = 325 Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats. Identities = 46/296 (15%), Positives = 91/296 (30%), Gaps = 37/296 (12%) Query: 75 ISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESR---KH 128 I + + LA + S+ + + R D I + + R Sbjct: 28 IQRFLDAIWAENGLARATLDSYRRDLEGLARWMDGRDGGLAGIERPGLFDYLAWRTRHGW 87 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +P S + L+++R F VR+ +P ++ PK + + + + Sbjct: 88 SPRSNARLLSALRAFFADGVRRGERGEDPSALLDPPKLPRLLPKALAERQIDALLAVPDI 147 Query: 189 ----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243 G + R E + +GLR S+ + ++ V L + Sbjct: 148 DSPLGLRDRAMLELMYAAGLRVSELVLLPATAVNLRQGVLRVTGKGSKERLVPLGEESQH 207 Query: 244 LLAMTPIG-----------------KETFFINNDKQKMNATQFSIWFKAKATKAGVN--- 283 L + F+ + F K A AG++ Sbjct: 208 WLERYLQASRPLLVGKGKVQALADGQTPLFVEPTLHALTRQAFWHLVKRHAQVAGIDPAR 267 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 S HG+R AT + GA L G ++ + YT + ++ +++ Sbjct: 268 ISPHGLRHSFATHLLNRGADLRALQMLLGHSSLSTTQIYT------LVAREHLQKL 317 >gi|83942296|ref|ZP_00954757.1| tyrosine recombinase XerD [Sulfitobacter sp. EE-36] gi|83846389|gb|EAP84265.1| tyrosine recombinase XerD [Sulfitobacter sp. EE-36] Length = 324 Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats. Identities = 50/308 (16%), Positives = 105/308 (34%), Gaps = 42/308 (13%) Query: 74 LISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKIT--TKHIRS---GVESRK 127 IS + ++ A N+++++ +T K I + +++ Sbjct: 8 WISTFLEAQAAELGAATNTQLAYGRDLKDFDSFLARRTLDFVTVGRKDIEAYLVWCDAQG 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S+ + L++++ L+++A + + + NP + + P + + +++++ Q Sbjct: 68 LAKSTRARRLSAIKQLYRFAFEEGWRSDNPAIQIAGPGQDKRLPKVLSEDEVDQLLDAAR 127 Query: 188 EG-------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD 239 + E L +G+R S+ V + + + K G V L D Sbjct: 128 HSGRNTSDQLRNTCLMELLYATGMRVSELVSLRVSAARGDPRLLLIMGKGGKERLVPLSD 187 Query: 240 GFMKLLAMTPIGK----------------ETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 + LA + + F + +F + K A AGV+ Sbjct: 188 PSREALAAWLVQRDRTDEAAQAKGKPASIYLFPSRGSAGYLTRHRFYLLIKEFALTAGVD 247 Query: 284 ---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 + H +R AT GA + G V E YT + R+S Sbjct: 248 PSKVTPHTLRHAFATHLLANGADLRAIQTMLGHADVATTEIYTHVLE---------ARLS 298 Query: 341 SVVDSDDP 348 +V + P Sbjct: 299 ELVLENHP 306 >gi|317124968|ref|YP_004099080.1| tyrosine recombinase XerD subunit [Intrasporangium calvum DSM 43043] gi|315589056|gb|ADU48353.1| tyrosine recombinase XerD subunit [Intrasporangium calvum DSM 43043] Length = 311 Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats. Identities = 48/291 (16%), Positives = 95/291 (32%), Gaps = 30/291 (10%) Query: 63 SPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKH 118 +P+ + T L + + + N+ S+E + ++ + Sbjct: 2 APKPRTTQLDREVRGWLDHVRIEKGASDNTLKSYERDLRKYREHLHHRGIERAAAVSERD 61 Query: 119 IRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 + + S + SSA + L ++R ++ + VA +P +V P + + Sbjct: 62 VTDFLASLRERGLAASSAARTLVAVRGFHRFLALEGEVAGDPAGNVAPPTPPSRLPKAIP 121 Query: 176 KEDMQQFKSFWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQN----------- 219 E +++ + S G + R E L G R S++ V L Sbjct: 122 IEAVERLLAASSVGDTPESLRDRALLEVLYGVGARISEAIDLDVDDLDTGVAGEVGLVRL 181 Query: 220 -----NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274 + + LA G F+N ++++ + Sbjct: 182 LGKGSKERIVPVGRFAVEAVDAYLVRGRPALAQRGQGGPALFLNQRGRRLSRQSAWSVVQ 241 Query: 275 AKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 A +AG+ + S H +R AT D GA + G +V + YT Sbjct: 242 RAAERAGLTEHVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYT 292 >gi|304407019|ref|ZP_07388673.1| integrase family protein [Paenibacillus curdlanolyticus YK9] gi|304344006|gb|EFM09846.1| integrase family protein [Paenibacillus curdlanolyticus YK9] Length = 316 Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats. Identities = 41/265 (15%), Positives = 90/265 (33%), Gaps = 27/265 (10%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--------TPSSAIQF 136 SL+ ++ +S+E IR + D + ++ +R +S ++ Sbjct: 36 RSLSESTLMSYERDLRHFIRFAADAGISA--PEQVQKHHMARYWLTLRQEGRKNASLSRY 93 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWSEGSQP 192 S+R F++ + ++ V +P ++ PK + R T ++ G + Sbjct: 94 RVSLRAFFRYLMDKQRVTADPTADMDAPKPDSPPPRILTAVQVELLLASPDPAEPSGLRD 153 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE-----------LPDGF 241 E + +G+R S+ ++H+ ++ I+ V Sbjct: 154 SAILETMYATGIRVSELIALDLEHVHVSLGFIRCSANAKERIVPIGRAASASLEAYLQSG 213 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISAD 299 + L ++ FIN ++M K A A + + + H +R A + Sbjct: 214 RERLLRDNSEEQAVFINRRGERMTRQGLWKIVKKHAALASIEGDLTPHSLRHSFAAHLLE 273 Query: 300 AGATAHELMATYGWKTVDQAETYTK 324 GA + G + + Y Sbjct: 274 NGADVRAVQEMMGHAGLAATQKYVH 298 >gi|237748814|ref|ZP_04579294.1| site specific integrase/recombinase [Oxalobacter formigenes OXCC13] gi|229380176|gb|EEO30267.1| site specific integrase/recombinase [Oxalobacter formigenes OXCC13] Length = 317 Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats. Identities = 45/299 (15%), Positives = 97/299 (32%), Gaps = 42/299 (14%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---P 130 I Y + L+ + I++ +++I + +++ IR P Sbjct: 2 IGRYLDTLTGQRQLSDQTVINYRRDLEELIELANQTKLATLSSSDIRRFTSKLHAKGLNP 61 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG- 189 S + L++ R ++W + + + NP + PK+ + + +D + + SE Sbjct: 62 RSISRKLSAWRGFYRWLIEENLTSANPVEDIHAPKKNKPLPKALSVDDAVRVVASTSEKE 121 Query: 190 ---------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----------- 229 FE L SGLR S+ + +++ + + Sbjct: 122 AVEQDRATLLCNHAMFELLYSSGLRVSELTSLDIHAIKDTGYRSASWINLEEKEVTVTGK 181 Query: 230 -GTIITVELPDGFMKLLAMT-------------PIGKETFFINNDKQKMNATQFSIWFKA 275 V + D + + FIN+ ++++ + K+ Sbjct: 182 GNKTRIVPIGDAAVHAIRNWLLTRETLIDPSLQQEHTNALFINSRGRRISPRTVQLRLKS 241 Query: 276 KATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 A G+ S H +R A+ + + G ++ + YT D RL Sbjct: 242 HANALGLPVSVHPHVLRHSFASHILQSSGDLRAVQEMLGHSSIASTQIYT-ALDFQRLA 299 >gi|190575908|ref|YP_001973753.1| site-specific tyrosine recombinase XerC [Stenotrophomonas maltophilia K279a] gi|190013830|emb|CAQ47468.1| putative integrase/recombinase [Stenotrophomonas maltophilia K279a] Length = 298 Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats. Identities = 35/275 (12%), Positives = 84/275 (30%), Gaps = 17/275 (6%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESRKHTP 130 + + + ++ ++ ++ D + + + +R V Sbjct: 3 AVQAFLQHLQVERRMSAHTLDAYRRDLDALSVWAEPRGVAVEALDADALRQFVADEHRRG 62 Query: 131 SSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF---KS 184 SA + L++ R + W ++ + ++P +++ P+ + ++ Q + Sbjct: 63 LSAKSLQRRLSACRSFYAWLLKHGRIEVSPAATLKAPRAPRRLPQVLDADEAVQLVELEP 122 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMK 243 G + R E SGLR S+ C + L + K V + Sbjct: 123 EGELGRRDRALLELFYSSGLRLSEVCALTWRDLDFDSGLVNVLGKGNRQRRVPFGRPARE 182 Query: 244 LLAMTPIG----KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297 L + ++ I + A + G+ + H +R A+ Sbjct: 183 ALQAWRAESGGGPASPVFPGRNGPISQRAVQIRIRQLAQRQGLFKHVHPHMLRHSFASHI 242 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 ++ + G + + YT D L Sbjct: 243 LESSGDLRGVQELLGHADIATTQIYTH-LDFQHLA 276 >gi|54288326|gb|AAV31614.1| predicted site-specific recombinase [uncultured alpha proteobacterium EBAC2C11] Length = 315 Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats. Identities = 50/286 (17%), Positives = 91/286 (31%), Gaps = 30/286 (10%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQI-------IRKSGDFDYRKITTKHIRSGVES 125 LI + ++ + +VN+ ++ + + D + + Sbjct: 17 LIDGFLQAISAMKAASVNTLSAYRRDLLDCQIGLETRAKTLTNCDMDDLR--GVIFWWHQ 74 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 R P S + L+++R WAV NP ++ P + ++ ++ Q Sbjct: 75 RDLKPRSVARRLSALRQFMGWAVEDGVRQDNPTTWLDNPSLPMSAPKSLSEVEIIQLLKM 134 Query: 186 ------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239 S + E L +GLR S+ V + N +I + G + Sbjct: 135 AKTLEPESASLRALAMLEILYATGLRVSELVSLLVVQFRRNPQTILVKGKGGRERLVPLG 194 Query: 240 GFMKLLAMTPIGKE----------TFFINNDKQKMNATQFSIWFKAKATKAGVNK---SA 286 +L A+ I F M+ Q + K A A + S Sbjct: 195 ETARLAAVRWIECRDSNPAFVQSDYMFPVRGGGPMSRHQLARLLKKLAVAADIEVGRVSP 254 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R AT + GA L + G + + YT + RL Sbjct: 255 HKLRHSFATHMLNRGADLRSLQSLLGHADISTTQIYT-SSRPERLA 299 >gi|319404882|emb|CBI78483.1| integrase/recombinase XerD [Bartonella rochalimae ATCC BAA-1498] Length = 307 Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats. Identities = 42/310 (13%), Positives = 101/310 (32%), Gaps = 42/310 (13%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVES 125 +I + + +V + ++++ K + + ++ S ++ Sbjct: 4 DAVIDRFLEMMSAERGASVCTLLAYQHDLQWAQNKLSSHSISFFSAQREDLINLLSLMQK 63 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-- 183 +S + L+++R F++ + +P ++ P++ + +++ M + Sbjct: 64 AGCAATSQARRLSTLRQFFQFLYAEGLREDDPSSDIDSPRQGRPLPKIISEDAMAKLLDF 123 Query: 184 ------------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTG 230 + + ++ E L +GLR S+ VQ ++ I K Sbjct: 124 AQLETEQAESGTQNYYRALRFQVLLEMLYATGLRISELVSLPVQAVRGKEQFILVRGKGE 183 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ---------FSIWFKAKATKAG 281 V L + ++L ++ A + K A +AG Sbjct: 184 KERVVLLSEKARQILLQWLSVRDQRKDATSIYLFPARSSTGYIARQFVARGLKDLAKRAG 243 Query: 282 V---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338 + N S H +R A+ GA + G + + + YT + R Sbjct: 244 IQSENFSPHVLRHAFASHLLQNGADLRAVQHLLGHRDISTTQIYTHVLE---------AR 294 Query: 339 ISSVVDSDDP 348 + +V+ P Sbjct: 295 LHRLVNEHHP 304 >gi|149908511|ref|ZP_01897173.1| tyrosine recombinase [Moritella sp. PE36] gi|149808345|gb|EDM68282.1| tyrosine recombinase [Moritella sp. PE36] Length = 333 Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats. Identities = 29/284 (10%), Positives = 86/284 (30%), Gaps = 27/284 (9%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSG---VESRK 127 I + + L++++ ++ + + + + +R Sbjct: 35 IERFLRYITSERQLSLHTVRNYRRHLILFAEQMLTLPITEWRALDASQVRKLATLNHKLG 94 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---- 183 +P S L+++R + V Q + NP V P++ + +++ Q Sbjct: 95 LSPRSLATKLSALRSFCDYLVLQGDLTANPAKGVSAPRQHKPLPKNLDVDEINQLLSVSN 154 Query: 184 ----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELP 238 + + E + +GLR + + ++ +++ + + Sbjct: 155 AVESDDPFLVLRDKAMMELMYSAGLRLDELVNLDLTDVKLREKTMRVIGKGNKQRQLPIG 214 Query: 239 DGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHG 288 + L + F++ +++++ + + + + H Sbjct: 215 SIAITALQAWLAVRGEYADNAQPALFVSQLRRRISHRSVQSRMAKWGQQQTLTSHVNPHK 274 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 +R AT ++ + G + + YT D L Sbjct: 275 LRHSFATHMLESSGDLRAVQELLGHANISTTQIYT-SLDFQHLA 317 >gi|134101746|ref|YP_001107407.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338] gi|291003082|ref|ZP_06561055.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338] gi|133914369|emb|CAM04482.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338] Length = 313 Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats. Identities = 48/283 (16%), Positives = 91/283 (32%), Gaps = 30/283 (10%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126 L + S Y A ++ S+ + G ++ + H+ + + Sbjct: 11 LSSVFSGYLNHLAVERGTARSTLDSYARDLRRYADHLLESGVRALGEVRSTHLSAFLAEL 70 Query: 127 KHTP--------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + SSA + L + R L ++A V ++ + P + D Sbjct: 71 REGGPERPALAQSSAARALIAARGLHRFAHADGIVEVDVAREISPPSPPKRLPKALPVSD 130 Query: 179 MQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTII 233 + + G + R E L SG R S++ V + +I K G Sbjct: 131 VLRLLDNTGGEDVRGLRDRALLELLYSSGARISEAVGLDVDDVDEAERTILLDGKGGRQR 190 Query: 234 TVELPDGFMKLLAMTPIGKETF-----------FINNDKQKMNATQFSIWFKAKATKAGV 282 V + + L + F+N+ +++ K+ A +AG+ Sbjct: 191 LVPVGRPALAALGAYMVRARPVLAGRGRGSSAVFLNSRGTRLSRQSAWNALKSAAERAGI 250 Query: 283 N--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 S H +R AT + GA + G +V + YT Sbjct: 251 GSGVSPHVLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYT 293 >gi|302189430|ref|ZP_07266103.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. syringae 642] Length = 299 Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats. Identities = 38/296 (12%), Positives = 89/296 (30%), Gaps = 24/296 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR------SGVESRK 127 + Y ++ ++ ++ +++ + I+ + + Sbjct: 5 LDAYCVHLRSERQVSPHTLEAYRRDLGKVLAYCQKAQLSSWSDLDIQHLRSFTARQHQQG 64 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + S + L+++R +K+ R+ +P + PK + + + Q Sbjct: 65 QSSRSLARMLSAVRGFYKYLNREGICQHDPANGLSPPKGERRLPKTLDTDRTAQLLDGGV 124 Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFM 242 E + + E L SGLR S+ + L K + + Sbjct: 125 EDDFLAHRDQAILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVGSKAR 184 Query: 243 KLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSA 294 + L + + F++ +++ + KA + G N H +R A Sbjct: 185 QALEVWLPLRALTNPRDDAVFVSQQGKRLGPRAIQVRLKAAGERELGQNLHPHMLRHSFA 244 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG---IKNSRRISSVVDSDD 347 + ++ + G + + YT D L R +DD Sbjct: 245 SHLLESSQDLRAVQELLGHADIKTTQIYTH-LDFQHLATVYDSAHPRAKRKGAADD 299 >gi|240139059|ref|YP_002963534.1| Tyrosine recombinase xerD [Methylobacterium extorquens AM1] gi|240009031|gb|ACS40257.1| Tyrosine recombinase xerD [Methylobacterium extorquens AM1] Length = 328 Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats. Identities = 44/273 (16%), Positives = 86/273 (31%), Gaps = 28/273 (10%) Query: 85 GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTS 139 A N+ ++ D + G D + + +R+ + S + SSA + L+ Sbjct: 27 RGAAANTLAAYRRDLDDYLGYLAEGGIDPEEAQAEQVRAYIASLEPRGLKASSAARRLSC 86 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG---------- 189 +R ++ + Y +P V P+R + + ++ + + E Sbjct: 87 IRGFHRFLYAEGYSETDPTAPVAAPRRAKGLPKVLSVAEVDRLLATARERVEAAGDDRAE 146 Query: 190 ----SQPRLAFEFLLYSGLRCSDSCR-AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 ++ E L +GLR S+ + + K G V L D + Sbjct: 147 ARAAARMLCLLELLYATGLRVSELVALPRSAAATRERYLVVKGKGGRERLVPLTDLAREA 206 Query: 245 LAMTPIG-----KETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATI 296 + F ++ + F+ K A A + S H +R A+ Sbjct: 207 MRTHVAHLTAEGSWLFPAESESGHLTRQAFARDLKTAAAAADLRTDRVSPHVLRHAFASH 266 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRI 329 GA + G + + YT D Sbjct: 267 LLQNGADLRIVQELLGHADISTTQIYTHVLDER 299 >gi|34222780|sp|Q48733|XERC_LACLE RecName: Full=Tyrosine recombinase xerC gi|1359910|emb|CAA59018.1| xerC recombinase [Lactobacillus leichmannii] Length = 295 Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats. Identities = 43/298 (14%), Positives = 108/298 (36%), Gaps = 27/298 (9%) Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFD-YRKITTKHIRSGVE 124 TL+ Y K+ S + + ++++ + +++G F + +I+ + + + Sbjct: 1 MTLEEQFLSYLKNE--RSYSPKTVLAYQKDLAAAKKFWQENGGFPGWDQISRRDLEIYLL 58 Query: 125 SRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + S+ + L+S++ ++ R+ V +P ++++ + K + + ++++ Q Sbjct: 59 ATGQKLASSTLSRKLSSLKSFYRLLTRRGLVKADPTVAIQLRRGKKKLPEFFYQDEVGQV 118 Query: 183 KSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVEL 237 ++G + R +G+R S+ ++ L I K V Sbjct: 119 IRSLNDGKPLTVRNRAIVALFYATGMRLSELTDLKIKQLDLENGMILVHGKGNKDRYVFF 178 Query: 238 PDGFMKLLAMT-----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284 K L E F+N + +++ + + KAG+ Sbjct: 179 DQESKKYLEEYLQVARPSLLKNEPDTEAVFLNKLGRPISSRGIAKAVQQIFQKAGLTAGA 238 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342 H +R AT + GA + G + + + YT + + L + + Sbjct: 239 HPHELRHSFATAMLNNGADLRSVQELLGHEDLSTTQIYTHVSMQ-HLTAEYRQHFPRK 295 >gi|258541884|ref|YP_003187317.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-01] gi|256632962|dbj|BAH98937.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-01] gi|256636019|dbj|BAI01988.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-03] gi|256639074|dbj|BAI05036.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-07] gi|256642128|dbj|BAI08083.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-22] gi|256645183|dbj|BAI11131.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-26] gi|256648238|dbj|BAI14179.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-32] gi|256651291|dbj|BAI17225.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654282|dbj|BAI20209.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-12] Length = 306 Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats. Identities = 47/295 (15%), Positives = 103/295 (34%), Gaps = 28/295 (9%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHTP- 130 + + + + A N+ ++E+ + TT+ +++ + + + Sbjct: 6 VDLFLEMLAAERAAAPNTLAAYEADLTSCAESLAREGQTLQTATTEGLQNWMAALVGSGQ 65 Query: 131 --SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + + L+ +R + + +R+ A NP ++ PK T R ++ ++ + +E Sbjct: 66 ARRTVARRLSCIRQFYLFLLREGMRADNPAAHLDSPKPHTPLPRFLSESEVLALLNACAE 125 Query: 189 -----------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVE 236 G + A E L SGLR S+ + + + + K G V Sbjct: 126 PAGASLAKKRRGILAKAALELLYASGLRISELLALPRKAIAGDQRMIMVRGKGGRERLVP 185 Query: 237 LPDGFMKL------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287 L D + + F + + M F A +A ++ S H Sbjct: 186 LSDSAREAAQALLEVDAHLESPFLFPGRDPAKPMTRQAFDRILHTVAIRAEIDPARLSPH 245 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKNSRRISS 341 +R AT GA L G + + YT +R++ ++ +++ Sbjct: 246 VLRHSFATHLLAHGADLRALQMLLGHADIATTQIYTHVQTERLQKAVQAHHPLAA 300 >gi|218282387|ref|ZP_03488669.1| hypothetical protein EUBIFOR_01251 [Eubacterium biforme DSM 3989] gi|218216673|gb|EEC90211.1| hypothetical protein EUBIFOR_01251 [Eubacterium biforme DSM 3989] Length = 300 Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats. Identities = 38/280 (13%), Positives = 73/280 (26%), Gaps = 21/280 (7%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESR 126 LK +Y + + S+ D + D K I+ I + ++ Sbjct: 3 LKDAFEDYHLYLSVVQRKSKKTVQSYLHDIDVYLDFLKDRKISKCENISVLDIEAFLDFY 62 Query: 127 K--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE---DMQQ 181 H SS + + S+ + L + K + + + Sbjct: 63 AEDHVASSLNRMIASIHSFHLQISTMHPEIKDVSLLIHGMKSSKHLPVYLSVDEVKKVFS 122 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-----TQKTGTIITVE 236 + L GLR S+ C + + +K ++ I+ Sbjct: 123 SFQDNEIDQYNKTILVVLYSCGLRVSELCDLKLNDVHLTEQILKVKGKGDKERIIPISSY 182 Query: 237 LPDGFMKLLAMTPIGKETFFINNDK-----QKMNATQFSIWFKAKATKAGV--NKSAHGV 289 L + ++ + K K + + SAH Sbjct: 183 CVSQMKYYLDSIRFVWDVKNVSYFFVNRLGHICTRQYVHLMIKQKVNELNLNPKISAHSF 242 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT D A + G + + YT D+ Sbjct: 243 RHSFATHLLDGDADLRIVQELLGHSNISTTQIYTHIQDKR 282 >gi|53724457|ref|YP_104732.1| site-specific tyrosine recombinase XerC [Burkholderia mallei ATCC 23344] gi|67639320|ref|ZP_00438190.1| tyrosine recombinase XerC [Burkholderia mallei GB8 horse 4] gi|121598868|ref|YP_994214.1| site-specific tyrosine recombinase XerC [Burkholderia mallei SAVP1] gi|124383751|ref|YP_001028133.1| site-specific tyrosine recombinase XerC [Burkholderia mallei NCTC 10229] gi|126441319|ref|YP_001057248.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei 668] gi|126449297|ref|YP_001082944.1| site-specific tyrosine recombinase XerC [Burkholderia mallei NCTC 10247] gi|167003305|ref|ZP_02269093.1| tyrosine recombinase XerC [Burkholderia mallei PRL-20] gi|167892320|ref|ZP_02479722.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei 7894] gi|167900817|ref|ZP_02488022.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei NCTC 13177] gi|217424901|ref|ZP_03456397.1| tyrosine recombinase XerC [Burkholderia pseudomallei 576] gi|237810385|ref|YP_002894836.1| tyrosine recombinase XerC [Burkholderia pseudomallei MSHR346] gi|254175248|ref|ZP_04881909.1| tyrosine recombinase XerC [Burkholderia mallei ATCC 10399] gi|254201831|ref|ZP_04908195.1| tyrosine recombinase XerC [Burkholderia mallei FMH] gi|254207161|ref|ZP_04913512.1| tyrosine recombinase XerC [Burkholderia mallei JHU] gi|254359667|ref|ZP_04975938.1| tyrosine recombinase XerC [Burkholderia mallei 2002721280] gi|52427880|gb|AAU48473.1| integrase/recombinase XerC [Burkholderia mallei ATCC 23344] gi|121227678|gb|ABM50196.1| tyrosine recombinase XerC [Burkholderia mallei SAVP1] gi|124291771|gb|ABN01040.1| integrase/recombinase XerC [Burkholderia mallei NCTC 10229] gi|126220812|gb|ABN84318.1| tyrosine recombinase XerC [Burkholderia pseudomallei 668] gi|126242167|gb|ABO05260.1| tyrosine recombinase XerC [Burkholderia mallei NCTC 10247] gi|147747725|gb|EDK54801.1| tyrosine recombinase XerC [Burkholderia mallei FMH] gi|147752703|gb|EDK59769.1| tyrosine recombinase XerC [Burkholderia mallei JHU] gi|148028881|gb|EDK86813.1| tyrosine recombinase XerC [Burkholderia mallei 2002721280] gi|160696293|gb|EDP86263.1| tyrosine recombinase XerC [Burkholderia mallei ATCC 10399] gi|217391921|gb|EEC31947.1| tyrosine recombinase XerC [Burkholderia pseudomallei 576] gi|237506023|gb|ACQ98341.1| tyrosine recombinase XerC [Burkholderia pseudomallei MSHR346] gi|238519856|gb|EEP83322.1| tyrosine recombinase XerC [Burkholderia mallei GB8 horse 4] gi|243061115|gb|EES43301.1| tyrosine recombinase XerC [Burkholderia mallei PRL-20] Length = 310 Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats. Identities = 41/288 (14%), Positives = 91/288 (31%), Gaps = 31/288 (10%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTP 130 I +Y + L+ ++ ++ D++ R + +T +R + + + Sbjct: 10 IVDYLSNLRHVRKLSDHTLRAYAHELDELKRLANGRPLDSLTAVDMRSAVARAHAGGLSA 69 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 S L++ R ++W + + NP +V PKR + + +D + G+ Sbjct: 70 RSISHRLSAWRAFYRWFSQHVEMNANPVAAVRAPKRAKTLPKALSVDDTAALMDAPTAGT 129 Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------GTIIT 234 + E SGLR ++ ++++++ + Sbjct: 130 AESLRDHAILELFYSSGLRLAELIGLDIEYVKDGAYRSAGWLDLAEAEVTVRGKGDKERK 189 Query: 235 VELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--K 284 V + + L F++ +M+ K A AG+ Sbjct: 190 VPVGRKALDALHAWLAVRGEFVKHDPRPLFLSVRGNRMSPGVVRERVKRAALAAGIPANV 249 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R AT + + G ++ + YT D L Sbjct: 250 HPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYT-SLDFQHLA 296 >gi|170742031|ref|YP_001770686.1| integrase family protein [Methylobacterium sp. 4-46] gi|168196305|gb|ACA18252.1| integrase family protein [Methylobacterium sp. 4-46] Length = 349 Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats. Identities = 61/347 (17%), Positives = 122/347 (35%), Gaps = 25/347 (7%) Query: 12 TKERTRHGKII-YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 ++R G Y++ G R+ P F+ +Y +A+ ++ + Sbjct: 11 RRKRLADGTWRTYWYAWKGGPRLE-GEPGTPEFMASYNTAVARRVETKQGV--------- 60 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--- 127 L LI ++ S + +R + + I ++ GDF +T + R + + Sbjct: 61 LLSLIQGFQASDSFLGKEPRTRADYVRHIKVIEQEFGDFPLGALTDRRTRGEFLTWRDRL 120 Query: 128 --HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + A + + + WA+ + + NPC R R + + WT +D ++F + Sbjct: 121 AVRSRRQADYAWSVLARILSWALDRGLILANPCERGGRLYRASRTDKVWTDDDERRFLAS 180 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 L L++G R D R +K KTG + + + L Sbjct: 181 APA--HLHLPLILALWTGQRQGDLLRLPWSAYDGETVRLKQGKTGARVVIPVGAPLRAAL 238 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATA 304 P +N++ + F + AG+ + H +R + + A AG + Sbjct: 239 DAAPRVSPVILVNSEGRPWTGDGFRSSWGKACRAAGIRGLTFHDLRGTAVSRLALAGCSE 298 Query: 305 HELMATYGWK--TVDQA--ETYTKGADRIRLGIKNSRRISSVVDSDD 347 E+ G V Y L + R++ + ++S D Sbjct: 299 AEIATLTGHSLRDVRSILDAHYLNR--DPALALAAVRKLETRMNSPD 343 >gi|297570024|ref|YP_003691368.1| tyrosine recombinase XerD [Desulfurivibrio alkaliphilus AHT2] gi|296925939|gb|ADH86749.1| tyrosine recombinase XerD [Desulfurivibrio alkaliphilus AHT2] Length = 356 Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats. Identities = 43/310 (13%), Positives = 92/310 (29%), Gaps = 53/310 (17%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD------------------------ 108 L+ + + LA N+ +++S Sbjct: 37 LLDFFLQYLAAERRLATNTLAAYQSDLLSFFAFLARATAPVAATVDAGATGTAGKDRGAG 96 Query: 109 ----FDYRKIT---TKHIRSG---VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158 +I +H+R+ K P S + ++++R F++ ++ + +P Sbjct: 97 LASARPITEINQIGPEHLRAYLAACRQEKAAPRSTSRRISALRAFFRFLQGEQLLGHDPA 156 Query: 159 LSVERPKRKTEGIRPWTKEDMQQFK-----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213 ++ PK + + +++Q + L +G+R S+ + Sbjct: 157 ALLDLPKIGRALPKVLSSAEVEQLLAPPAPPASILALRNHAMLHLLYATGMRVSELVKLP 216 Query: 214 VQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF----------FINNDKQK 263 V + K V + + +A+ F+ Sbjct: 217 VAAVNQAGHLRILGKGSKERLVPFGEAARQAMAVYITQARPRLLKKRRSDFLFVTGRGTA 276 Query: 264 MNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321 M +F + A + G+ S H +R AT + GA + G + + Sbjct: 277 MTRLRFWQIVRKSARERGIAREISPHVLRHSFATHLLEHGADLRAVQVMLGHADIATTQI 336 Query: 322 YTKGADRIRL 331 YT D RL Sbjct: 337 YTH-VDTNRL 345 >gi|296129776|ref|YP_003637026.1| tyrosine recombinase XerD [Cellulomonas flavigena DSM 20109] gi|296021591|gb|ADG74827.1| tyrosine recombinase XerD [Cellulomonas flavigena DSM 20109] Length = 310 Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats. Identities = 41/287 (14%), Positives = 85/287 (29%), Gaps = 34/287 (11%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126 L + Y LA ++ ++ + + G + +IT + V Sbjct: 5 LTAALEGYLAHLAVERGLAAHTLAAYRRDLTRYVAHLHARGRTEPAEITERDAEDYVLVL 64 Query: 127 KH--------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + +P+SA + + ++R ++ + + P + + +D Sbjct: 65 RTGSDGRAVLSPASAARSVVALRGWHRFLALDGLAPTDAAAELRPPAQPRRLPKAIGVDD 124 Query: 179 MQQFKSFWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS---------- 223 + + G + R E + +G R S++ V L Sbjct: 125 VARLLDAAGLGDGPVPLRDRALLELVYSTGARISEAVGLDVDDLDLTPDRGAVRLLGKGG 184 Query: 224 ----IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279 + LA G F+N +++ + A + Sbjct: 185 KERVVPVGSYAAQAVDAYLVRGRPALAAAGRGTPAIFLNTRGARLSRQSAWAVLRTAAER 244 Query: 280 AGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 AG+ + S H +R AT GA + G +V + YT Sbjct: 245 AGLAADHLSPHTLRHSFATHLLAGGADVRVVQELLGHASVATTQIYT 291 >gi|188581692|ref|YP_001925137.1| tyrosine recombinase XerD [Methylobacterium populi BJ001] gi|179345190|gb|ACB80602.1| tyrosine recombinase XerD [Methylobacterium populi BJ001] Length = 332 Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats. Identities = 43/273 (15%), Positives = 86/273 (31%), Gaps = 28/273 (10%) Query: 85 GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTP---SSAIQFLTS 139 A N+ ++ D + D + +R+ + S + SSA + L+ Sbjct: 27 RGAAANTLAAYRRDLDDYLGYLAQQGIDPEEAQADQVRAYIASLEPRGLKASSAARRLSC 86 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----------- 188 +R ++ + Y +P V P+R + + ++ + + + Sbjct: 87 IRGFHRFLYAEGYCETDPTAPVAAPRRAKGLPKILSVAEVDRLLATARDRVEAAGDDRTE 146 Query: 189 ---GSQPRLAFEFLLYSGLRCSDSCR-AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 ++ E L +GLR S+ + + K G V L + + Sbjct: 147 ARSAARMLCLLELLYATGLRVSELVALPRSAASARERYLVVKGKGGRERLVPLTELAREA 206 Query: 245 LAMTPIG-----KETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATI 296 + F +++ + F+ K A AG+ S H +R A+ Sbjct: 207 MRAHVAHLTADGAWLFPADSESGHLTRQAFARDLKVAAAAAGLRTDRVSPHVLRHAFASH 266 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRI 329 GA + G V + YT D Sbjct: 267 LLQNGADLRIVQELLGHADVSTTQIYTHVLDER 299 >gi|323483868|ref|ZP_08089245.1| integrase/recombinase XerD [Clostridium symbiosum WAL-14163] gi|323692871|ref|ZP_08107096.1| integrase/recombinase XerD [Clostridium symbiosum WAL-14673] gi|323402822|gb|EGA95143.1| integrase/recombinase XerD [Clostridium symbiosum WAL-14163] gi|323503046|gb|EGB18883.1| integrase/recombinase XerD [Clostridium symbiosum WAL-14673] Length = 282 Score = 122 bits (307), Expect = 5e-26, Method: Composition-based stats. Identities = 45/279 (16%), Positives = 94/279 (33%), Gaps = 24/279 (8%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSG---VESR 126 + +Y + ++ N+ +S+ Q+ G+ + +T + S +E Sbjct: 6 DIFIKYLQ--EVKKMSRNTVLSYHRDLLQMASYMGERGITEAGKVTKTSLTSYILFMEKE 63 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-- 184 ++ + L SM+ F + + + NP V PK + + + E++ Sbjct: 64 GKATTTISRMLASMKAFFHYEFSEGKIRRNPAELVHAPKIEKKAPVILSVEEVTSLLKQP 123 Query: 185 --FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242 S+ + + E L +G+R S+ + + NI I + G T+ Sbjct: 124 SGRSSKEIRDKAMLELLYATGIRVSELTSLKLTDINMNIGFITCRDGGKDRTIPFSRVAK 183 Query: 243 KLLAMTPIG----------KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290 + + F+N + +M+ F K KAG+ + + H +R Sbjct: 184 GAMEDYIENARSELTRKKESDWLFVNCNGGQMSRQGFWKIIKFYGDKAGIESDITPHTLR 243 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 A GA + G V + Y + Sbjct: 244 HSFAAHLIGGGADMKAVQVILGHSDVATTQMYAAYVGKR 282 >gi|167627355|ref|YP_001677855.1| phage integrase family protein [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597356|gb|ABZ87354.1| phage integrase family protein [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 293 Score = 122 bits (307), Expect = 5e-26, Method: Composition-based stats. Identities = 36/266 (13%), Positives = 90/266 (33%), Gaps = 16/266 (6%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 I + + + + + + ++ Q+ D D K+ I V+ +S+ Sbjct: 7 IDNFLDNLLYLKNYSQETINNYRRDLLQLNSSIVDKDITKLENNDILMWVKKLHAQGNSS 66 Query: 134 I---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---SFWS 187 + L+S+R F + + E + NP ++ PK + + +++ + Sbjct: 67 KTLQRKLSSLRSFFNFLINSELIKNNPTTGIKAPKSSKKLPKAVNTDELAYLLDIKPSNN 126 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLA 246 ++ F+ L G+R S+ ++ + N SI+ V + L Sbjct: 127 IETRDIACFDLLYSCGIRLSELSSIELKDININQKSIRVIGKGNKERVVYFGSKTLINLN 186 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--------NKSAHGVRKFSATISA 298 ++T+ + ++ + ++ + + + H +R AT Sbjct: 187 RWLNTRDTYSPKCNFLFISQNGEHLTNRSIQKRIEIFAQKYATKHIHPHMLRHSFATHVL 246 Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324 D+ + G + + YT Sbjct: 247 DSSKDLLAVKDLLGHADISSTQIYTH 272 >gi|147669488|ref|YP_001214306.1| phage integrase family protein [Dehalococcoides sp. BAV1] gi|146270436|gb|ABQ17428.1| phage integrase family protein [Dehalococcoides sp. BAV1] Length = 368 Score = 122 bits (307), Expect = 5e-26, Method: Composition-based stats. Identities = 53/359 (14%), Positives = 115/359 (32%), Gaps = 50/359 (13%) Query: 16 TRHGKIIYYF------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 T+ GK Y R ++ + + L + + + + T Sbjct: 6 TKRGKDSYSIVISTGERDPETKKYKQHWETVRGTKKDAEKRLAELLNQIDKGLYIKPEKT 65 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVES--- 125 TL + + K W +LA + +E + II G ++ +HI+ + Sbjct: 66 TLAEYLERWLKDYVWPNLAPRTAEGYEHIIRRYIIPGLGKIQLAQLKPEHIQKYYANQLS 125 Query: 126 ------RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 +P + + K AV+ E + NP +++ P+ + + T+E + Sbjct: 126 IGGDKGIGLSPRTVRHHHMCLHSALKTAVKWELLIRNPLDAIDPPRCQKHEMHTLTEEAV 185 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS---------------- 223 + +E + F L++GLR S+ + + Sbjct: 186 HKVLEIANE-TPYFTLFYLALFTGLRRSELLALKWSAVDLIMCQLSVSRSLHVLSGGEII 244 Query: 224 -IKTQKTGTIITVELPDGFMKLLAMTPIGKE--------------TFFINNDKQKMNATQ 268 +T+ + +V L +++L ++ F N D + + Sbjct: 245 TRQTKTARSTRSVALSPSTVQVLKDHRDKQQAFKILAGSHLNNDDFIFTNIDGKPLLPNT 304 Query: 269 FSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325 + + K G+N H R A++ G + G ++ +TY+ Sbjct: 305 ITHNWIKLIRKTGLNGIRLHDARHTHASLMLKQGVHPKIVQERLGHSSIQVTLDTYSHV 363 >gi|332178907|gb|AEE14596.1| Tyrosine recombinase xerC [Thermodesulfobium narugense DSM 14796] Length = 298 Score = 122 bits (307), Expect = 5e-26, Method: Composition-based stats. Identities = 32/289 (11%), Positives = 87/289 (30%), Gaps = 24/289 (8%) Query: 77 EYRKSAHWGSL-AVNSRISFESYFDQIIRKSGD-------FDYRKITTKHIRSGVESRKH 128 ++ + L + N+ ++ S + + K+T + S+ Sbjct: 10 DFLDYLQFSKLCSNNTIRAYRSDLISWFEFLKNSKNNLNELEITKLTYDWLIEDQNSKLL 69 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 SS + +++++ + + + L+++ PK+ + D+ + Sbjct: 70 KKSSVSRKISAVKSFLNYLYKFNVINNKLSLTLKNPKKDRILPKYLNYSDVADVINKNFT 129 Query: 189 GSQPR-----LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 S L L +G+R S+ ++ + + I+ V + Sbjct: 130 SSNFYSFRNSLIILLLFNTGIRISELKNIKLEDINLDRNEIRVIGKGNKERVVFFTNFTK 189 Query: 243 KLLAMTPIGKETFFINNDKQKMNA-------TQFSIWF-KAKATKAGVNKSAHGVRKFSA 294 L + ++ T+ G + + H +R A Sbjct: 190 NFLKQYITERLKLKTKCRYLFISRLKSRISERMIRYIVSNTWKTQTGKSITPHQLRHSLA 249 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADR--IRLGIKNSRRISS 341 T + G + G + ++ Y K ++ + K+ ++ Sbjct: 250 TFLLNQGVELKYIQEILGHENINTTNIYAKLTEKTIKKEYYKSLDKLEK 298 >gi|120610000|ref|YP_969678.1| tyrosine recombinase XerD [Acidovorax citrulli AAC00-1] gi|120588464|gb|ABM31904.1| tyrosine recombinase XerD [Acidovorax citrulli AAC00-1] Length = 309 Score = 122 bits (307), Expect = 5e-26, Method: Composition-based stats. Identities = 49/301 (16%), Positives = 96/301 (31%), Gaps = 30/301 (9%) Query: 65 RKKPTTLK----WLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDF------DYRK 113 +P TL I + + L+ N+ ++ + G+ Sbjct: 3 TSRPMTLSPGSQAAIDAFVDTLWLEDGLSRNTLAAYRRDLALYAQWLGEHVPDTAGMLDA 62 Query: 114 ITTKHIRSGVESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 H+++ +R +SA + LT +R F+WA+R+ +AI+P + ++ ++ Sbjct: 63 TMEHHLQAYFAARHAQTRATSANRRLTVLRRYFQWALRERRIAIDPTVRLQAARQPLRVP 122 Query: 172 RPWTKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227 + + ++ G + R E + SGLR ++ H ++ Sbjct: 123 KTLSAAQVEALLQSPDTSTALGLRDRAMLELMYASGLRVTELVTLKTYHAGLAEGVLRVM 182 Query: 228 KT-GTIITVELPDGFMKLLAMTPIG----------KETFFINNDKQKMNATQFSIWFKAK 276 V + + L + F+ M F + K Sbjct: 183 GKGSKERLVPFGEVAAQWLQRYLDHARADILAGQRTDDLFVTRRGAGMTRAMFWVVVKKH 242 Query: 277 ATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334 A AG+ S H +R AT + GA + G + YT A + Sbjct: 243 AQSAGIHVPLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTTIYTHVARERLKALH 302 Query: 335 N 335 Sbjct: 303 A 303 >gi|99082221|ref|YP_614375.1| site-specific tyrosine recombinase XerC [Ruegeria sp. TM1040] gi|99038501|gb|ABF65113.1| phage integrase [Ruegeria sp. TM1040] Length = 311 Score = 122 bits (307), Expect = 5e-26, Method: Composition-based stats. Identities = 40/289 (13%), Positives = 87/289 (30%), Gaps = 29/289 (10%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSG 122 + + + A N+ ++ + + G R+ITT +R+ Sbjct: 14 RDALQRWLDGLGALEGAADNTLAAYRGDVVEFLSFMSLHFGAPQGLGALRQITTADMRAW 73 Query: 123 VESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + S + + + A + L++++ + W ++E LS PK + + RP ++ Sbjct: 74 MASARSSGTGARSLARKLSAVKKFYGWLAKREGFEPTAVLSTRAPKFQKKLPRPLDQDAA 133 Query: 180 QQFK-------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 + ++ L GLR S++ + K G Sbjct: 134 RAMIDTVELQSQKDWVSARDVAVVTLLYGCGLRISEALGLLGKDAPLPATLRIKGKGGKE 193 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKM-------NATQFSIWFKAKATKAGVNKS 285 V + + + + +A + G+ + Sbjct: 194 RVVPVLPAAQQAVERYLALCPHPKEAHLPLFRGVRGGALHARMIQGVMAGARRQLGLPAT 253 Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R AT +AG + G ++ + YT D L Sbjct: 254 ATPHALRHSFATHLLEAGGDLRAIQELLGHASLSTTQAYT-AVDTAHLM 301 >gi|254515505|ref|ZP_05127565.1| tyrosine recombinase XerC [gamma proteobacterium NOR5-3] gi|219675227|gb|EED31593.1| tyrosine recombinase XerC [gamma proteobacterium NOR5-3] Length = 311 Score = 122 bits (307), Expect = 5e-26, Method: Composition-based stats. Identities = 40/285 (14%), Positives = 95/285 (33%), Gaps = 23/285 (8%) Query: 70 TLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGVES 125 +L I+ + + L+ ++ ++ D + H+R + Sbjct: 10 SLAQRIAAFLEYLRSVRRLSSHTVTAYRRDLDSFEDFCQQHSVTGCSDVQESHVRQWLAQ 69 Query: 126 RKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 T P+S + L+++R F+W NP L+V+ P+++ + + + + Sbjct: 70 GHRTGLAPNSLQRRLSALRAYFQWESSDTGQRRNPALAVQAPRKRRKLPGTLEADQVGVY 129 Query: 183 KSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELP 238 + E L SGLR ++ + + + T K TV + Sbjct: 130 LRADDNDPLQLRDLAMAELLYSSGLRLAELRAVNIHDIDRSQSLISVTGKGSKTRTVPVG 189 Query: 239 DGFMKLLAMTPIGKETF---------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287 ++ + + T F++ ++++ + A + G+ + H Sbjct: 190 RIAIEAIDAYLPHRPTPTSAADEQALFVSGRGRRISERSIQARIQLLAQRNGLGRDVHPH 249 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 +R A+ ++ + G + + YT D L Sbjct: 250 MLRHSFASHLLESSGDLRAVQELLGHSDISTTQIYTH-LDFQHLA 293 >gi|312143561|ref|YP_003995007.1| integrase family protein [Halanaerobium sp. 'sapolanicus'] gi|311904212|gb|ADQ14653.1| integrase family protein [Halanaerobium sp. 'sapolanicus'] Length = 311 Score = 122 bits (307), Expect = 5e-26, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 97/301 (32%), Gaps = 35/301 (11%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-------GDFDYRKITTKHIRSG 122 +++++K + + +E+ Q+ R +F + I Sbjct: 8 FLEAVNKFKKYLDVEKGYSKLTIKEYENDLQQLYRYLKEELDFPEEFKPEDVDRLDIAEF 67 Query: 123 VES----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + + + L ++R +K+ +R + NP +++ K T+ + K Sbjct: 68 LADAVIVNDNKAITRNRKLFAIRSFYKYLLRYGVIEKNPAEAIDSSKTDTKLEPIYLKLK 127 Query: 179 MQQFKSFWSEG------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GT 231 Q + + + LY+GLR S+ ++ SIK Sbjct: 128 EAQKFIAAIDDKDNINRLRDIAITKLFLYAGLRISELVNLDFDNVDFEDGSIKFYGKGSK 187 Query: 232 IITVELPDGFMKLLAMT-----------PIGKETFFINNDKQKMNATQFSIWFKAKATKA 280 V L + + L ++ F++ ++++ ++ K A KA Sbjct: 188 ERYVPLHNDVTEALKRYLKERNTIKIKDQDARQAIFLSRHGRRISPRTIQLFVKKYAKKA 247 Query: 281 GV----NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKN 335 G+ + H +R A++ L G + + YT + + I Sbjct: 248 GLSRADKITPHKLRHTFASMLYRQTKDIKVLQDLLGHANISTTQIYTHVDTEEKKSAIDE 307 Query: 336 S 336 Sbjct: 308 M 308 >gi|302871811|ref|YP_003840447.1| integrase family protein [Caldicellulosiruptor obsidiansis OB47] gi|302574670|gb|ADL42461.1| integrase family protein [Caldicellulosiruptor obsidiansis OB47] Length = 328 Score = 122 bits (307), Expect = 5e-26, Method: Composition-based stats. Identities = 45/287 (15%), Positives = 93/287 (32%), Gaps = 45/287 (15%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDY-------------------------RKITTKHI 119 + + N+ + +R D + IT ++ Sbjct: 21 KNKSPNTIKEYYYDLRTFLRYLKAKDLNVLNQIEKIEDLENIDVSSFEIEKLKTITLSNL 80 Query: 120 RSGVE----SRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPW 174 ++P S + + S+R FK+ + + + NP +E PK R Sbjct: 81 YEYFSFLATRFNNSPYSRARKVASIRSFFKYLYSKAKLIPDNPAKDLESPKLGKRNPRYL 140 Query: 175 TKEDMQQFKSFWS--EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 T E+ ++ S + L GLR S+ + +++++ I + Sbjct: 141 TLEESKKLLSAIDGENKERDFAIITLFLNCGLRLSELVNINLSDIKDDMLRIVGKGN-KE 199 Query: 233 ITVELPDGFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGV-- 282 + L + + + T F++ K++++ + AG+ Sbjct: 200 RIIYLNKACKEAIENYLKVRPTEGVKDKDALFLSERKKRISRRTVQYIVEKYVKMAGINQ 259 Query: 283 -NKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD 327 SAH +R +AT+ G L G +++ E YT D Sbjct: 260 KKISAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVND 306 >gi|161526251|ref|YP_001581263.1| site-specific tyrosine recombinase XerC [Burkholderia multivorans ATCC 17616] gi|189349035|ref|YP_001944663.1| site-specific tyrosine recombinase XerC [Burkholderia multivorans ATCC 17616] gi|160343680|gb|ABX16766.1| tyrosine recombinase XerC [Burkholderia multivorans ATCC 17616] gi|189333057|dbj|BAG42127.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616] Length = 306 Score = 122 bits (307), Expect = 5e-26, Method: Composition-based stats. Identities = 45/288 (15%), Positives = 91/288 (31%), Gaps = 31/288 (10%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTP 130 I+ Y + + L+ ++ ++ D++ + + + IR + + + Sbjct: 6 IAAYLSNLKYVRQLSEHTLRAYTHELDELKKLAAGRPLDTLVAADIRGAVARAHAGGLSA 65 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFW 186 S L++ R ++W ++ + NP +V PKR + + +D M + Sbjct: 66 RSISHRLSAWRAFYRWLAQRVEMPANPVAAVRAPKRPKTLPKALSVDDASALMDAPLADT 125 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------GTIIT 234 +EG + E SGLR ++ V + Q + Sbjct: 126 TEGIRDHAILELFYSSGLRLAELIGLDVAYTQTGDYRSAGWLDLAEAEVTVRGKGNKERK 185 Query: 235 VELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--K 284 V + + L F++ +M+ K A AG+ Sbjct: 186 VPVGRKAIDALNAWLAVRGEFVKHDPHPLFLSVRGNRMSPGVVRERVKRAALAAGIPAHV 245 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R AT + + G +V + YT D L Sbjct: 246 HPHVLRHSFATHVLQSSGDLRAVQELLGHASVSATQVYT-SLDFQHLA 292 >gi|77163851|ref|YP_342376.1| site-specific tyrosine recombinase XerC [Nitrosococcus oceani ATCC 19707] gi|254435837|ref|ZP_05049344.1| tyrosine recombinase XerC [Nitrosococcus oceani AFC27] gi|76882165|gb|ABA56846.1| tyrosine recombinase XerC subunit [Nitrosococcus oceani ATCC 19707] gi|207088948|gb|EDZ66220.1| tyrosine recombinase XerC [Nitrosococcus oceani AFC27] Length = 300 Score = 122 bits (307), Expect = 5e-26, Method: Composition-based stats. Identities = 35/280 (12%), Positives = 88/280 (31%), Gaps = 22/280 (7%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRS---GVESR 126 I ++ + L+ + +S+ + ++G +++++ + +R+ Sbjct: 8 WIQKFFTHLQYERGLSPQTVVSYRRDLAKAIAFCGRNGIGNWQELDAQRVRALVVAHHQA 67 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + S + L+++R + + R+ V NP + PK K + Q + Sbjct: 68 GLSGRSIQRLLSALRSFYVYLQRENIVDHNPAQGISAPKGKRALPPSLDVDQTAQLLNTQ 127 Query: 187 SEG---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM 242 + + E SGLR ++ + L + ++ G V L Sbjct: 128 PCSDLLLRDQAILELFYSSGLRLAELVGLNLSALDLDTALVRVVGKGAKTREVPLGRRAK 187 Query: 243 KLLAMTPIGKETFFIN--------NDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292 L + + ++++ + + G + H +R Sbjct: 188 VALLAWLPVRAGWINQSQEAVFITRHGRRLSPRAVQKRLRLWGLRQGFDVAIHPHRLRHA 247 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 A+ ++ + G + + YT D L Sbjct: 248 FASHLLESSGDLRAVQELLGHADISTTQIYTH-LDFQHLA 286 >gi|281357422|ref|ZP_06243910.1| integrase family protein [Victivallis vadensis ATCC BAA-548] gi|281316025|gb|EFB00051.1| integrase family protein [Victivallis vadensis ATCC BAA-548] Length = 314 Score = 122 bits (307), Expect = 5e-26, Method: Composition-based stats. Identities = 40/300 (13%), Positives = 91/300 (30%), Gaps = 42/300 (14%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVES 125 + + + + + ++ ++ S + +R+ + D + ++ R V S Sbjct: 2 SAALDGFLQYLRVERNASSHTVEAYRSDILEFLRRVMEADESFNAWSQVERNQARRFVSS 61 Query: 126 R---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ-- 180 + S + L+++R F++ +R E + NP L + K + + Sbjct: 62 LFEAGDSKRSIQRKLSALRSFFRYMMRMELLGDNPFLKLPPIKADQPLPLVMSINQIDLL 121 Query: 181 ------------------QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222 ++ ++ E + GLR S++ + + Sbjct: 122 TKAVGEYWEMAAANGISKSDEAAEFAAARDLAMVEVIYSGGLRISETTGLDMGDIDLIGG 181 Query: 223 SIKTQKT-GTIITVELPDGFMKLLAMTPI----------GKETFFINNDKQKMNATQFSI 271 + + L K L F+N +++ F Sbjct: 182 IARVRGKGKKERIAVLGRPSQKALRNYFKLRSTVGGGRAPGSPVFLNKFGKRLTPRSFQR 241 Query: 272 WFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 K A + + H +R AT DAGA + G + + + YT + Sbjct: 242 NLKNYLIAANLPPDLTPHKLRHSFATHLLDAGADLRSVQEMLGHENLSTTQIYTHVSAER 301 >gi|261416671|ref|YP_003250354.1| integrase family protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373127|gb|ACX75872.1| integrase family protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327068|gb|ADL26269.1| site-specific recombinase, phage integrase family [Fibrobacter succinogenes subsp. succinogenes S85] Length = 298 Score = 122 bits (307), Expect = 5e-26, Method: Composition-based stats. Identities = 46/288 (15%), Positives = 95/288 (32%), Gaps = 26/288 (9%) Query: 71 LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVESRKH 128 L I + + + I++ ++ + + + ++++ V K Sbjct: 3 LDEYIQNFLIYLQTQRRYSERTVITYRKSLEKYLATINENAPLEAFSEMNVKAFVWDLKI 62 Query: 129 T----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW------TKED 178 P+S + L +++ K+ VR + + NP +V PKR + ++ Sbjct: 63 KQKLAPTSICEHLAALKSFGKYLVRSKILQKNPAEAVPMPKRPKRLVSFLGQKDLAEEKF 122 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVEL 237 + ++ + RL E + SGLR S+ LQ ++ V + Sbjct: 123 PELPENPTLPQVRARLLLELIYGSGLRISECQSLCWNQLQIKERLVRVIGKGNKERIVPI 182 Query: 238 PDGFMKLLA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285 D + L TP F++ + + + G S Sbjct: 183 TDTLISWLEKFRAVEIEAGHTPTITSYVFLSENGKPYDIRTLRNDIHNLLRDIGWEGKAS 242 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLG 332 H +R AT + GA + G + + YT A+R++ Sbjct: 243 PHVLRHSFATHLLENGAEIMSVKEMLGHSNISTTQIYTHVNAERLKQA 290 >gi|146305305|ref|YP_001185770.1| site-specific tyrosine recombinase XerC [Pseudomonas mendocina ymp] gi|145573506|gb|ABP83038.1| tyrosine recombinase XerC subunit [Pseudomonas mendocina ymp] Length = 315 Score = 122 bits (307), Expect = 5e-26, Method: Composition-based stats. Identities = 41/300 (13%), Positives = 95/300 (31%), Gaps = 24/300 (8%) Query: 70 TLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVES 125 T + + Y + ++V++ + +++ G D+ + T+ +R + Sbjct: 17 TFEAHLDAYLEHLRRERQVSVHTLDGYRRDLGKLLAFCEAEGLSDWAALDTRSLRRLIAR 76 Query: 126 RKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 S + L++ R L+++ +R+ +P + PKR+ R + Q Sbjct: 77 LHAQGLASRSLARLLSATRGLYQYLLREGLCRHDPAAGLSPPKRERRLPRTLDADRSAQL 136 Query: 183 KSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVEL 237 E + + E SGLR S+ V L ++ + + + Sbjct: 137 LDGAVEDDFIARRDQAMLELFYSSGLRLSELVGLDVDGLDLPAGLVRVRGKGNKTRELPV 196 Query: 238 PDGFMKLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGV 289 + L FI+ +++ + + + G + H + Sbjct: 197 GSMARQALEQWLPLRKLAGPSDGAVFISQQGRRLGPRAVQLRVRQAGVRELGQHLHPHML 256 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG---IKNSRRISSVVDSD 346 R A+ ++ + G + + YT D L + R S+ Sbjct: 257 RHSFASHMLESSQDLRAVQELLGHADIATTQIYTH-LDFQHLATVYDQAHPRAKRKGGSE 315 >gi|309379484|emb|CBX21850.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 334 Score = 122 bits (307), Expect = 5e-26, Method: Composition-based stats. Identities = 39/293 (13%), Positives = 87/293 (29%), Gaps = 30/293 (10%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGV 123 Y ++ + ++ ++ +++ + ++ + + + Sbjct: 35 FAAHFDAYLENIVREGKSEHTVAAYRRDLEELFALLAQMPSEAEGGVPQDLSRRDFTAAL 94 Query: 124 ESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + + L+S R W V++ + +P + PK+ + +E + Sbjct: 95 RRLSQRGLNARTLARKLSSWRQYCAWLVKRGLMRTDPTAGISPPKQPQRIPKALPQEWLN 154 Query: 181 QFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIIT 234 + +G + FE + SGLR S+ + + + T K Sbjct: 155 RMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQ 214 Query: 235 VELPDGFMKLLAMTPIGKETFFIN---NDKQKMNATQFSIWFKAKATKA-----GVNKSA 286 V L + L ++T + K A A G + S Sbjct: 215 VPLTGKSAEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAINGDGRHVSP 274 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 H +R A A + G ++ + YTK L + R+ Sbjct: 275 HMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK------LDFDHIARL 321 >gi|126734338|ref|ZP_01750085.1| putative integrase [Roseobacter sp. CCS2] gi|126717204|gb|EBA14068.1| putative integrase [Roseobacter sp. CCS2] Length = 345 Score = 122 bits (307), Expect = 5e-26, Method: Composition-based stats. Identities = 66/300 (22%), Positives = 110/300 (36%), Gaps = 15/300 (5%) Query: 21 IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK 80 YY+ G RI+ Y F+ YM+ + SP+ K ++ WLI++Y + Sbjct: 21 KTYYYAHRGGPRIQAKY-GSPEFVTQYMAL--------KQSASPKVKRNSIDWLITQYLE 71 Query: 81 SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT----KHIRSGVESRKHTPSSAIQF 136 S + +L+ S+ ++ Y I +K G T R S + +A Sbjct: 72 SYDFKALSDASKREYKRYLTLISQKFGKAPIDIATRNDAIAAYRQWHRSMQDKQRTANYA 131 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRK-TEGIRPWTKEDMQQFKSFWSEGSQPRLA 195 L ++ L WAV NP ++ KRK R Q G + Sbjct: 132 LAVLKKLMAWAVDSGNTTTNPTAQIKPIKRKGKSTRRDIIWTKDQINHFNTVAGCHVKNP 191 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255 F L + R D + I+ KTG + +++P+ +L E Sbjct: 192 FNAALLTSQRKKDIIEMTWDAYDGDTIKIRQSKTGKDVWIKVPEELKCILDGLDRTHERV 251 Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWK 314 F+N+ Q + F+A A VN + H R + T++ GA+ E+ G Sbjct: 252 FLNSLGQPWTLDGYDSSFRAAKIAAKVNGVTFHDTRGTAVTLAYIGGASFREISLMSGHS 311 >gi|110635391|ref|YP_675599.1| site-specific tyrosine recombinase XerD [Mesorhizobium sp. BNC1] gi|110286375|gb|ABG64434.1| tyrosine recombinase XerD subunit [Chelativorans sp. BNC1] Length = 308 Score = 122 bits (307), Expect = 5e-26, Method: Composition-based stats. Identities = 49/308 (15%), Positives = 99/308 (32%), Gaps = 43/308 (13%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGVESRKH 128 I + + + N+ S+ G F + + + +R Sbjct: 7 IEAFLEMMAAERGASDNTLASYRRDLGDADAYLEAPCGGVFKASAADIRKYLADMTARGF 66 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-- 186 ++ + L+S+R FK+ + +P ++ PK+ + ++ +M Sbjct: 67 ASTTQARKLSSLRQFFKFLYSEGMRDDDPTGVLDSPKKGRPLPKTLSESEMNALLERAAD 126 Query: 187 -----SEGSQPRLAF-------EFLLYSGLRCSDSCRAGVQH-LQNNIFSIKTQKTGTII 233 G+ R+A E L SGLR S+ ++ L++ F K G Sbjct: 127 EAREAPAGTPARVAAQRLSTLLEMLYASGLRVSELVSLPLRVALRDERFFTVRGKGGKER 186 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAGV- 282 V L + +A+ + + + + F+ K A +AG+ Sbjct: 187 MVPLSAKAREAVALWLKERARHPSFANSPWLFPAVSASGYLSRQVFARELKGLAGRAGIS 246 Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 S H +R A+ GA + G + + YT + +R+ Sbjct: 247 TAKISPHVLRHAFASHLLQNGADLRAVQQLLGHADISTTQIYTHVLE---------KRLQ 297 Query: 341 SVVDSDDP 348 +V P Sbjct: 298 ELVQKHHP 305 >gi|206558906|ref|YP_002229666.1| site-specific tyrosine recombinase XerC [Burkholderia cenocepacia J2315] gi|198034943|emb|CAR50815.1| tyrosine recombinase XerC [Burkholderia cenocepacia J2315] Length = 306 Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats. Identities = 43/288 (14%), Positives = 89/288 (30%), Gaps = 31/288 (10%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTP 130 I+ Y + L+ ++ ++ D++ + + +T +R + + + Sbjct: 6 IAAYLSNLKHVRQLSEHTLRAYTHELDELKKLAAGRPLDALTAADMRGAVARAHAGGLSA 65 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 S L++ R ++W ++ + NP +V PKR + + +D G+ Sbjct: 66 RSISHRLSAWRAFYRWLAQRIEMPANPVAAVRAPKRPKTLPKALSVDDASALMDAPLAGT 125 Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------GTIIT 234 + E SGLR ++ V + Q + + Sbjct: 126 TEGIRDHAILELFYSSGLRLAELIGLDVTYTQADGYRSAGWLDLAEAEVTVRGKGNKERK 185 Query: 235 VELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--K 284 V + + L F++ +M+ K A AG+ Sbjct: 186 VPVGRKAIDALNAWLAVRGEFVKHDPHPLFVSVRGNRMSPGVVRERVKRAALAAGIPANV 245 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R AT + + G +V + YT D L Sbjct: 246 HPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQVYT-SLDFQHLA 292 >gi|257482612|ref|ZP_05636653.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 290 Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats. Identities = 37/285 (12%), Positives = 85/285 (29%), Gaps = 23/285 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR------SGVESRKHTPSSAIQFLT 138 ++ ++ ++ +++ I+ + + + S + L+ Sbjct: 7 RQVSPHTLEAYRRDLGKVLAYCQKAQLSSWNDLDIQHLRSFTARQHQQGQSSRSLARMLS 66 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194 ++R +K+ R+ +P + PK + + Q E + + Sbjct: 67 AVRGFYKYLNREGICQHDPANGLSPPKGDRRLPKTLDTDRTAQLLDGGVEDDFLAHRDQA 126 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLAMT----- 248 E L SGLR S+ + L K + + + L + Sbjct: 127 ILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVGSKARQALEIWLPLRA 186 Query: 249 --PIGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSATISADAGATAH 305 + F++ +++ + KA + G N H +R A+ ++ Sbjct: 187 LTNPQDDAVFVSQQGKRLGPRTIQVRLKAAGERELGQNLHPHMLRHSFASHLLESSQDLR 246 Query: 306 ELMATYGWKTVDQAETYTKGADRIRLG---IKNSRRISSVVDSDD 347 + G + + YT D L R +DD Sbjct: 247 AVQELLGHADIKTTQIYTH-LDFQHLATVYDSAHPRAKRKGAADD 290 >gi|330952167|gb|EGH52427.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae Cit 7] Length = 299 Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats. Identities = 38/296 (12%), Positives = 87/296 (29%), Gaps = 24/296 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR------SGVESRK 127 + Y ++ ++ ++ +++ + I+ + + Sbjct: 5 LDAYCMHLRSERQVSPHTLEAYRRDLGKVLAYCQKARLSSWSDLDIQHLRSFTARQHQQG 64 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + S + L+++R +K+ R+ +P + PK + + + Q Sbjct: 65 QSSRSLARMLSAVRGFYKYLNREGICQHDPANGLSPPKGERRLPKTLDTDRTAQLLDGGV 124 Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFM 242 E + + E L SGLR S+ + L K + + Sbjct: 125 EDDFLAHRDQAILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVGSKAR 184 Query: 243 KLLAMTPIGKETFFINNDKQKMN-------ATQFSIWFKAKATK-AGVNKSAHGVRKFSA 294 + L + + +D ++ + KA + G N H +R A Sbjct: 185 QALEVWLPLRALTHPQDDAVFVSLQGRRLGPRAIQVRLKAAGERELGQNLHPHMLRHSFA 244 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG---IKNSRRISSVVDSDD 347 + ++ + G + + YT D L R +DD Sbjct: 245 SHLLESSQDLRAVQELLGHADIKTTQIYTH-LDFQHLATVYDSAHPRAKRKGAADD 299 >gi|167630281|ref|YP_001680780.1| tyrosine recombinase xerc, putative [Heliobacterium modesticaldum Ice1] gi|167593021|gb|ABZ84769.1| tyrosine recombinase xerc, putative [Heliobacterium modesticaldum Ice1] Length = 340 Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats. Identities = 46/288 (15%), Positives = 102/288 (35%), Gaps = 31/288 (10%) Query: 74 LISEYRKSAHWG-SLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGVESR- 126 I Y + + A+++R ++ S Q+I G +++ +R + Sbjct: 43 WIDRYLRYLAAEGNHAIHTRSAYASDLAQLIELLEQTDSGVPRLPEVSADRLRLCITRLY 102 Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 SS + L + R F++ VR+ + +P ++ PK + ++ ++ S Sbjct: 103 AVGMERSSLARKLAAWRGFFRYLVREGQLTSHPMKRLKSPKLGRPLPKTLSESEVSCLLS 162 Query: 185 F------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL 237 + E SGLR ++ C + + + ++ K G V + Sbjct: 163 AAERRGDEPLALRNLAMVELFYASGLRVAELCGLDLGSVDAGLGYVRVLGKGGKERIVPV 222 Query: 238 PDGFMKLLAMTPIGKETF------------FINNDKQKMNATQFSIWFKAKATKAGVNK- 284 + ++ ++ F+N+ ++++ A A + + Sbjct: 223 GEQALEAISRYLKQGRPALARRQREVSPALFLNHRGRRLSVRGAQDILSRIADGAALERG 282 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330 S H +R AT D GA + G + + YT A+R++ Sbjct: 283 ISPHTLRHTFATHLLDGGADLRSVQEMLGHAKLSTTQIYTHVSAERLK 330 >gi|150390005|ref|YP_001320054.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF] gi|149949867|gb|ABR48395.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF] Length = 354 Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats. Identities = 31/254 (12%), Positives = 87/254 (34%), Gaps = 18/254 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----KHTPSSAIQFLTSM 140 + ++ S+ + + + + +T + + + +++ + A Q L+++ Sbjct: 91 KGYSPKTKKSYIGHVKRFLGFINNKP-EVLTKQDVEKYMYHLLNVQENSHAFANQALSAI 149 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200 + ++ +++++ V + RPK++ ++ ++ + + + Sbjct: 150 KFYYQHSLKKDKV----LYDLPRPKKEKTLPNILSQREVLSILDSVN-NIKHKSILLLTY 204 Query: 201 YSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN 258 +GLR + R V + ++ ++ K L + + L + ++ Sbjct: 205 SAGLRVGEVVRLKVGDIDSDRMLIHVRQGKGRKDRYTILSEVALSTLRKYAMIEKPKDWL 264 Query: 259 ND----KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYG 312 + F +A V K S H +R AT + G + G Sbjct: 265 FPGGKENCFLTERSVQKTFSVACKRAKVKKHASVHSLRHSFATHLLEGGTDLRYIQELLG 324 Query: 313 WKTVDQAETYTKGA 326 + E YT + Sbjct: 325 HSSSKTTEIYTHVS 338 >gi|307317617|ref|ZP_07597056.1| integrase family protein [Sinorhizobium meliloti AK83] gi|306896775|gb|EFN27522.1| integrase family protein [Sinorhizobium meliloti AK83] Length = 400 Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats. Identities = 68/375 (18%), Positives = 119/375 (31%), Gaps = 37/375 (9%) Query: 9 PFVTKERTRHGKIIYYFRKGH-GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67 P +T G + +R ++ P + F Y + G K E + P Sbjct: 13 PGITLFVDHRGTTRWRYRSKTIKGKLMPGNPGDEEFEKEYKLLVEGEPKKAEVVELPDAA 72 Query: 68 -PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR---------KSGDFDYRKITTK 117 P T + + W L ++ + + GD + Sbjct: 73 LPQTFRAAWKALTSTQDWADLDPATKSKQSRNAKEFLDLPIVPGKEGTWGDVPVNDMDDD 132 Query: 118 HIRSGVESR------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP-----KR 166 + K TPS ++ +F +A ++++ +P V+ Sbjct: 133 DLEKIKLRLSVDSKGKPTPSKPWHVKVVLKKIFFYARKRKWRQDDPTDLVKWKRGGAKNG 192 Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH---------- 216 G +PW E QQF++ GS R + L+ G R D R Sbjct: 193 GYVGWKPWPWELRQQFEARHPIGSAARTCYALALFIGNRRGDVARLRWTDLKLVPFEDEW 252 Query: 217 ---LQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273 L + L P KE +N + + Sbjct: 253 IYVFDYIQNKKVQNDDDMRQIRPLSRMLSEALEPLPRDKEFVLLNGYGVPFSEKSLTGMM 312 Query: 274 KAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +AG+ K + HG+RK A+AGA+ + G T+D+ Y KGA ++RL Sbjct: 313 AHWTHQAGMPKGYTLHGLRKSYGGDLAEAGASEMQQKDMLGHTTLDEVVNYAKGASKLRL 372 Query: 332 GIKNSRRISSVVDSD 346 ++ +RR+ + Sbjct: 373 TVEGTRRLEEYHEKR 387 >gi|194367246|ref|YP_002029856.1| site-specific tyrosine recombinase XerC [Stenotrophomonas maltophilia R551-3] gi|194350050|gb|ACF53173.1| tyrosine recombinase XerC [Stenotrophomonas maltophilia R551-3] Length = 296 Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats. Identities = 36/275 (13%), Positives = 83/275 (30%), Gaps = 17/275 (6%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTP 130 + + + ++ ++ ++ D + + + + +R V Sbjct: 3 AVQAFLQHLQVERRMSAHTLDAYRRDLDALSVWAEPRGMAVEALDAETLRQFVADEHRRG 62 Query: 131 SSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF---KS 184 SA + L++ R + W ++ + +NP +++ P+ + ++ Q + Sbjct: 63 LSAKSLQRRLSACRSFYAWLLKHGRIEVNPAATLKAPRAPRRLPQVLDADEAVQLVELEP 122 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMK 243 G + R E SGLR S+ C + L K V + Sbjct: 123 EGELGRRDRALLELFYSSGLRLSEVCALTWRDLDFASGLVNVMGKGNRQRRVPFGRPARE 182 Query: 244 LLAMTPIG----KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297 L ++ I + A + G+ + H +R A+ Sbjct: 183 ALQAWRAESGGGPAMPVFPGRNGPISQRAVQIRIRQLAQRQGLFKHVHPHMLRHSFASHI 242 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 ++ + G + + YT D L Sbjct: 243 LESSGDLRGVQELLGHADIATTQIYTH-LDFQHLA 276 >gi|167835019|ref|ZP_02461902.1| site-specific tyrosine recombinase XerC [Burkholderia thailandensis MSMB43] Length = 306 Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats. Identities = 39/288 (13%), Positives = 91/288 (31%), Gaps = 31/288 (10%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTP 130 I++Y + L+ ++ ++ D++ + + +T +R + + + Sbjct: 6 IADYLSNLRHVRKLSDHTLRAYAHELDELKKLANGRPLESLTAVDMRGAVARAHAGGLSA 65 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 S L++ R ++W + + NP +V PK + + +D + G+ Sbjct: 66 RSISHRLSAWRAFYRWFSQHVEMNANPVAAVRAPKHAKTLPKALSVDDAAALMDAPTAGT 125 Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------GTIIT 234 + E SGLR ++ +++ ++ + + Sbjct: 126 AENLRDHAILELFYSSGLRLAELIGLDIEYAKDGDYRSEGWLDLAEAEVTVRGKGDKERK 185 Query: 235 VELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--K 284 V + + L F++ +M+ K A AG+ Sbjct: 186 VPVGRKAIDALNAWLAVRGEFVKRDPRPLFLSVRGNRMSPGVVRERVKRAALAAGIPANV 245 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R AT + + G ++ + YT D L Sbjct: 246 HPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYT-SLDFQHLA 292 >gi|315084829|gb|EFT56805.1| phage integrase, SAM-like domain protein [Propionibacterium acnes HL027PA2] Length = 331 Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats. Identities = 42/304 (13%), Positives = 89/304 (29%), Gaps = 55/304 (18%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHI---RSGVESRK 127 +Y + L+ N+ ++ + G ++T + R ++ Sbjct: 9 AEDYLRHLVVERGLSDNTVQAYRRDLLRYQEYLGSRGIGSLAEVTRVDVEEFRRHLDHIG 68 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 P+S + + ++R L ++AV + + + R + + + ++ + Sbjct: 69 LAPASVTRCVVAVRNLHRFAVGSGQLQADVTAGMSPGTRSRRLPKALSMDQVESLLAAPD 128 Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-----TQKTGTIITVELP 238 EG + E L +G R S+ C V ++ + K V L Sbjct: 129 TSTVEGLRDAALLELLYGTGARVSEVCALDVDDIRPVLDDPDLGLRLIGKGDKERIVPLG 188 Query: 239 DGFMKLLAMTPIGKETFFI------------------------------------NNDKQ 262 K + I + N + Sbjct: 189 SYAAKAVDAWLIRGRPAWAEIGNGEHALLLNTRGRRLSRQSAWAEIGNGEHALLLNTRGR 248 Query: 263 KMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 +++ + AG++ S H +R AT D GA + G +V Sbjct: 249 RLSRQSAWAVIRRAGEAAGLDVEHLSPHSLRHSYATHLLDGGADVRVVQELLGHSSVTTT 308 Query: 320 ETYT 323 + YT Sbjct: 309 QIYT 312 >gi|206602932|gb|EDZ39412.1| Integrase [Leptospirillum sp. Group II '5-way CG'] Length = 367 Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats. Identities = 54/359 (15%), Positives = 106/359 (29%), Gaps = 30/359 (8%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63 + V + G + G+ IR ++ Y R Sbjct: 3 RAKQDRGVFERPVDSGIWWVRYTW-QGKEIRRKIGRKTDAKNYYARVRAQILEGRYEPEK 61 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 PR TL + EY ++ SL+ + + ++ G I T + Sbjct: 62 PRVV--TLGAWLGEYMETVTSVSLSQ--QRGYAKFWT---NTLGGRPIASIKTAELERIQ 114 Query: 124 ESRKHT----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 S + PS+ + ++ F A+R + NP V K ++ D Sbjct: 115 VSLREAGKLAPSTINRHFAFLKHTFNIALRDGLIKENPVKGVHFFKEPKGRTVFLSEADE 174 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239 + K +S P + E +++GLR S+ +++ + + + +T +P Sbjct: 175 AKLKESFSPEYWPYV--ELAIHTGLRQSEQFNLRWENIDMTSRVLTVPVSKSGLTRHVPL 232 Query: 240 --------GFMKLLAMTPIGKETFFINNDKQKMNATQFSI-WFKAKATKAGV-NKSAHGV 289 +K + + + + F F KAG+ H + Sbjct: 233 NDTALAVLRDLKARQVILSPWVFPSPVDHTKPRDGNAFYKKVFVPAIEKAGLSGVVWHTL 292 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 R + AG + G K Y L + ++ +P Sbjct: 293 RHTFCSRLVQAGVPLTTVQKLAGHKDYSTTLIYAH------LSPDHLHEAVGILSGKNP 345 >gi|332184082|gb|AEE26336.1| site-specific recombinase, phage integrase family [Francisella cf. novicida 3523] Length = 375 Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats. Identities = 44/335 (13%), Positives = 108/335 (32%), Gaps = 25/335 (7%) Query: 22 IYYFRKGHGRRI-RLPYPHESTFIPAYMSALT-------GSTPKREYINSPRKK-PTTLK 72 + G+ R+I + T A A G P +E + TL+ Sbjct: 41 RLRYTIGNKRKIYTIGKLGSITLTQAKKEAQRLIGLISQGIDPVQERKSKTTSNHDITLR 100 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR-----SGVESRK 127 I+++ W + + + E + + K D +++ K + + K Sbjct: 101 EYINDFY--YDWYNKNNKNTKALEFSLGRRLEKIMDKSLKELNDKKVMIKYLNDYQKINK 158 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + ++ + L++++ +F A Y+ N V+ K +R + + +F Sbjct: 159 TSDATYNRMLSTLKGMFSRAYEFGYIETNNIKDVKLLKINATKVRYLSSSETTRFFESLE 218 Query: 188 EGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPDGF 241 + + Y+G+R S+ + + I K+ + + + + Sbjct: 219 LITSQQAKEIIIIAYYTGMRKSEILTLTFDDIDFDTKQIVLKSENTKSSKVRYIPMHEKV 278 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADA 300 +++L+ F++ K + + + H +R ++ Sbjct: 279 LQILSNKNQKSGYIFVSEKTGKP-YDNIDRSWTKLMKLSEIENFRFHDLRHNFCSMLVMK 337 Query: 301 GATAHELMATYGWKTVDQAETYTKGA-DRIRLGIK 334 G + + G V + Y + D + I Sbjct: 338 GVPIYTVAQLAGHADVKTTQIYAHLSPDVKKSAID 372 >gi|325068736|ref|ZP_08127409.1| tyrosine recombinase XerD [Actinomyces oris K20] Length = 307 Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats. Identities = 45/286 (15%), Positives = 96/286 (33%), Gaps = 38/286 (13%) Query: 78 YRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVE--------S 125 Y L+ ++ ++E + +R G ++++ + +E + Sbjct: 4 YLAHLRVERGLSPHTLSAYERDLGRYLRYLRSAGISAPQEVSRNDVAGFLEVLRTGSDGA 63 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 R SSA + +T++R K+ + + + +P +V P+ + +++++ Sbjct: 64 RPLASSSASRTVTAVRGWHKFLLAEGTTSEDPSATVRPPQPGRRLPKALGVDEVRRLLEA 123 Query: 186 WSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239 + R E L +G R S++ V L + ++ K V + Sbjct: 124 AGVDDSPVSLRDRALLEVLYATGARISEAVGLVVDDLDTDSKLLRLFGKGRKERVVPMGA 183 Query: 240 GFMKLLAMT-----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV------ 282 + L G F+N + ++ + A +AG+ Sbjct: 184 YAWEALDAYLVRGRPVLAEKGRGVPQVFLNTLGRPLSRQSAWAVLQQAAERAGLIGTDGA 243 Query: 283 ---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 S H +R AT GA + G +V + YTK Sbjct: 244 DERRISPHTLRHSFATHLLAGGADVRVVQEMLGHASVTTTQIYTKV 289 >gi|260438241|ref|ZP_05792057.1| tyrosine recombinase XerD [Butyrivibrio crossotus DSM 2876] gi|292809434|gb|EFF68639.1| tyrosine recombinase XerD [Butyrivibrio crossotus DSM 2876] Length = 306 Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats. Identities = 35/288 (12%), Positives = 91/288 (31%), Gaps = 28/288 (9%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129 L+ EY + L + ++++ Q ++ +T + + + + Sbjct: 4 LQTFFEEYISFCQYQKRLDRKTLNAYKTDLKQFSQQLHSISIEAVTPDMLENYISHLHQS 63 Query: 130 PS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT--------------EGIRP 173 + + + S++ F + +E + NP + R+ Sbjct: 64 YKSKTVKRKIASLKAFFHYLKYKEIIDRNPFDKIHVKFREPVILPKTIPLRTVETFLATI 123 Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTI 232 + + + + + E L +G+R S+ C V + +I K Sbjct: 124 YHQRNCAKTTYQRRNAIRDIAVIELLFSTGIRISELCSLNVNDVNLQDGTILIYGKGSKE 183 Query: 233 ITVELPD--------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-- 282 + + + + + ++ + FF+N + ++ + A + Sbjct: 184 RCMHIGNDKVLSVLLEYKQEYSIEIQNCKHFFVNQSGRFLSDQAVRRMINKYSALAAIEL 243 Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 + + H R AT +A + G +++ E YT A + Sbjct: 244 HITPHMFRHTFATCLLEADVDIRYIQEMLGHSSINITEIYTHVAMSKK 291 >gi|330870011|gb|EGH04720.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330892013|gb|EGH24674.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. mori str. 301020] Length = 290 Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats. Identities = 37/285 (12%), Positives = 86/285 (30%), Gaps = 23/285 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR------SGVESRKHTPSSAIQFLT 138 ++ ++ ++ +++ I+ + + + S + L+ Sbjct: 7 RQVSPHTLEAYRRDLGKVLAYCQKAQLSSWNDLDIQHLRSFTARQHQQGQSSRSLARMLS 66 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194 ++R +K+ R+ +P + PK + + + Q E + + Sbjct: 67 AVRGFYKYLNREGICQHDPANGLSPPKGERRLPKTLDTDRTAQLLDGGVEDDFLAHRDQA 126 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLAMT----- 248 E L SGLR S+ + L K + + + L + Sbjct: 127 ILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVGSKARQALEIWLPLRA 186 Query: 249 --PIGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSATISADAGATAH 305 + F++ +++ + KA + G N H +R A+ ++ Sbjct: 187 LTNPQDDAVFVSQQGKRLGPRTIQVRLKAAGERELGQNLHPHMLRHSFASHLLESSQDLR 246 Query: 306 ELMATYGWKTVDQAETYTKGADRIRLG---IKNSRRISSVVDSDD 347 + G + + YT D L R +DD Sbjct: 247 AVQELLGHADIKTTQIYTH-LDFQHLATVYDSAHPRAKRKGAADD 290 >gi|319409399|emb|CBI83043.1| integrase/recombinase XerC [Bartonella schoenbuchensis R1] Length = 332 Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats. Identities = 44/299 (14%), Positives = 89/299 (29%), Gaps = 33/299 (11%) Query: 82 AHWGSLAVNSRISFESYFDQI----IRKSGD----FDYRKITTKHIRSGVESR---KHTP 130 +A ++ ++E Q G D + +R+ + R K + Sbjct: 34 VKTRRMATHTAQAYERDTRQFLIFLCHHLGHEVTCKDLADLRVVDLRAYLAHRRTLKISA 93 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE-------DMQQFK 183 S + + S+R F + R+ V + PK +P + Q + Sbjct: 94 RSLSRNVASLRSFFNYLSREGIVDTLAAKLIRTPKHPKLLPKPLNVQAALHIIKPENQQE 153 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVELPDGF 241 ++ L G+R S++ + + + K G V L Sbjct: 154 DEPWIIARNVAVLALLYGCGMRISEALALTPEQFSDPEITSLSVIGKGGKTRLVPLIKTV 213 Query: 242 MKLLAMTPIGKETFFINNDKQ-------KMNATQFSIWFKAKATKAGVNKS--AHGVRKF 292 +++ ++ + + + G+ ++ H +R Sbjct: 214 YEMVETYLKCCPYPLVSTQPMFRGVRGGPLQPAIIQRLVQNLRARLGLPETTTPHALRHS 273 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG---IKNSRRISSVVDSDDP 348 AT G + G + + YT D RL K R S V++S+ P Sbjct: 274 FATHLLSRGGDLRTIQELLGHACLSTTQVYTH-IDTDRLLEVYQKAHPRASKVIESEKP 331 >gi|169828358|ref|YP_001698516.1| site-specific tyrosine recombinase XerC [Lysinibacillus sphaericus C3-41] gi|168992846|gb|ACA40386.1| Tyrosine recombinase xerC [Lysinibacillus sphaericus C3-41] Length = 320 Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats. Identities = 49/292 (16%), Positives = 92/292 (31%), Gaps = 43/292 (14%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRK------------SGDFDYRKITTKHIRS---- 121 Y + + +R +E R D I+ + IR Sbjct: 16 YLTTI--KGKSQRTRKEYEYDLSLFFRFHTAVQEDLNIENLAAIDIATISIEEIREITLE 73 Query: 122 --------GVESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIR 172 R ++ +S + + +++ FK+ ++ + NP +E PK + Sbjct: 74 DLYYFMEYCEVQRGNSAASRARKVATLKSFFKYLKGKRRLIEENPAEELESPKIGRKRPI 133 Query: 173 PWTKE---DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229 + F L G+R ++ C+ + +Q ++ + Sbjct: 134 YMNFREATQFIDGIPVNQASPRNYCMMMFFLNLGIRVTELCQLNITSIQGRHLTVVGKGN 193 Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQK---------MNATQFSIWFKAKATKA 280 TV L D M+ LA +T + N + + K ++ Sbjct: 194 -KERTVYLNDSCMQALADYENSGKTPYKGNGDEPLFVSQKGTRFTRQTVAKIVKRINQQS 252 Query: 281 GVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 G+ K + H +R SAT+ AGA L G +V + YT D Sbjct: 253 GLQKERLTPHKLRHTSATMMYKAGADIRSLQHILGHSSVATTQIYTHIEDEQ 304 >gi|16800384|ref|NP_470652.1| hypothetical protein lin1316 [Listeria innocua Clip11262] gi|34222949|sp|Q92C75|XERC_LISIN RecName: Full=Tyrosine recombinase xerC gi|16413789|emb|CAC96547.1| codV [Listeria innocua Clip11262] Length = 300 Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats. Identities = 37/280 (13%), Positives = 91/280 (32%), Gaps = 26/280 (9%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHIRSGVE 124 L + H + + ++ ++E+ R + + + + + ++ Sbjct: 5 GQLEKRFLDYLHSERNYSEHTSTAYENDLSDFRRFLNEQAIIEYQQVTFLDVRIYLTELK 64 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + + ++ + ++S+R + + +R+ + NP V K + + + E+M+ Sbjct: 65 QKSFSRTTVARKISSLRSFYTFLLRENVITENPFTYVSHAKNQLRLPKFFYSEEMEALFQ 124 Query: 185 FWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238 E + R+ E L +G+R S+ + L + +I K V Sbjct: 125 VVYEDNETLTLRDRVILEVLYGTGIRVSECAGIMLSDLDTSYQAILIRGKGNKERYVPFG 184 Query: 239 DGFMKLLAMT-----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285 + ++ IN+ + +KA + Sbjct: 185 AYAEDAITDYLSGRIELMTRFKKTHDSLLINHYGDPLTTRGIRYCLTKIISKASLTRKIH 244 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 H +R AT + GA + G ++ + YT Sbjct: 245 PHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHV 284 >gi|313205824|ref|YP_004045001.1| integrase family protein [Riemerella anatipestifer DSM 15868] gi|312445140|gb|ADQ81495.1| integrase family protein [Riemerella anatipestifer DSM 15868] gi|315022781|gb|EFT35805.1| Probable integrase [Riemerella anatipestifer RA-YM] gi|325336737|gb|ADZ13011.1| Integrase, catalytic core, phage [Riemerella anatipestifer RA-GD] Length = 358 Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats. Identities = 40/266 (15%), Positives = 91/266 (34%), Gaps = 16/266 (6%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESRKHT 129 +++ + N+ ++ F Q++ DF +++ + +R E+ K + Sbjct: 85 AFELFQEHLKLKGYSRNTLRTYAVEFAQLLYVLKDFPVDELSEERLRSYFLYCFENLKLS 144 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + + +++ F Q + RPK+K + + K+ + + + Sbjct: 145 EAEINSRINAIKFYF----EQALHRKKMFFDIPRPKKKKQLPKSLNKKQILKIFEVTT-N 199 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLLAM 247 + R + GLR S+ ++ + + ++ + V LP+ + L Sbjct: 200 LKHRCMLQLCYGMGLRVSEIVNLKLEDICSETMRVRIENAKGKKDRMVPLPESILPELRA 259 Query: 248 TPIGKETFFI---NNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGA 302 + + FK KAG+NK+ HG+R AT + G Sbjct: 260 YYREYKPKKYLFEGQYGGMYSVRSVQSVFKTAMRKAGINKTVGIHGLRHSYATHLLEMGT 319 Query: 303 TAHELMATYGWKTVDQAETYTKGADR 328 + G + + YT+ Sbjct: 320 DIRYIQEFLGHNNIKTTQIYTQVTSE 345 >gi|326204549|ref|ZP_08194406.1| integrase family protein [Clostridium papyrosolvens DSM 2782] gi|325985342|gb|EGD46181.1| integrase family protein [Clostridium papyrosolvens DSM 2782] Length = 297 Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats. Identities = 47/290 (16%), Positives = 99/290 (34%), Gaps = 25/290 (8%) Query: 69 TTLKWLISEYRKSAHW-GSLAVNSRISFESYFD---QIIRKSGDFD-YRKITTKHIRSGV 123 T+ ++ + + ++ S F + G ITT +R Sbjct: 1 MTIHDYFEDFINFLKAEKDASAFTIANYTSDFSIFSSFVESQGIKPTVDAITTPLLRKYT 60 Query: 124 E----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 +K+ + + + S+R F + + QEY+ NP + PK+ +++ Sbjct: 61 TFLKIDKKYEVETIRRKINSLRSFFSFLISQEYIDKNPMAPITAPKKPDRLPIYLKPDEI 120 Query: 180 -----QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTI 232 K + + E L+++GLR S+ Q++ +I K Sbjct: 121 KLLISMPMKHSRDNKLRDKCIIETLVFTGLRRSELLSLNWQNIDFGSNTITVLNGKGKKQ 180 Query: 233 ITVELPDGFMKLLAMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVN---K 284 V + + + L FI+ + +++ T + F+ AG+ Sbjct: 181 RVVPITEPLISDLWAYLQTRLPLHDNAVFISGNGTRLSTTPLNQLFRRYLKLAGLTGKGY 240 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334 + H +R T+ GA + + G ++ + YT D L + Sbjct: 241 TIHKLRHSYGTLLLQNGADLISIQSLMGHNDLNTTKIYTH-VDMKHLKQE 289 >gi|213963184|ref|ZP_03391442.1| tyrosine recombinase XerD [Capnocytophaga sputigena Capno] gi|213954268|gb|EEB65592.1| tyrosine recombinase XerD [Capnocytophaga sputigena Capno] Length = 303 Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats. Identities = 40/277 (14%), Positives = 93/277 (33%), Gaps = 28/277 (10%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS-------GVESR 126 Y + L+ N+ +S+ +++I ++ + T +I ++ Sbjct: 8 AFQHYLRLQ--RGLSQNTAVSYGLDIEKLICYLEKYNITE-TPNNIEEDTLRQFVYEVAK 64 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 S + +++++ FK+ + ++ P +E PK + + +++ + Sbjct: 65 DLNARSQARLISALKSFFKFMMYEKGREDFPMSLIESPKIGVKLPDTLSLQEIDAMLASI 124 Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ------------KTG 230 EG + + E L GLR S+ + L + I+ Sbjct: 125 DLSTDEGHRNKAMIEMLYACGLRVSELISLRLSDLFFDEDFIRVMGKGSKQRLVPIEAYT 184 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHG 288 + D + L + ++ F+N +++ + A G+ K+ H Sbjct: 185 QKQVKQYIDNQRRQLKIAKGHEDFVFLNRRGKQLTRAMIFTIVRQVAENIGLQKTISPHT 244 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 R AT + GA + G + + E Y Sbjct: 245 FRHSFATHLLENGANLRAIQMMLGHENITTTEIYVHV 281 >gi|171057831|ref|YP_001790180.1| tyrosine recombinase XerD [Leptothrix cholodnii SP-6] gi|170775276|gb|ACB33415.1| tyrosine recombinase XerD [Leptothrix cholodnii SP-6] Length = 286 Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats. Identities = 43/282 (15%), Positives = 87/282 (30%), Gaps = 31/282 (10%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---------KHTPSSAIQF 136 L+ N+ ++ + + + +++ + S+A + Sbjct: 9 GLSKNTLAAYRRDLQGLAAAL----PAQQSAGLLQASEAHLLGVITARHAQTRASTANRR 64 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQP 192 LT + ++WA+R+ + +P L + ++ ++ ++ + G + Sbjct: 65 LTVFKRFYRWALREALCSADPTLRLSAARQPKRLPGTLSEAQVEALLAAPALDTPLGLRD 124 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMT--- 248 R FE + +GLR S+ L K V + Sbjct: 125 RAMFELMYGAGLRVSELVSIRTLQLALVDQVLKVLGKGAKERLVPFGGEARHWIERYLTE 184 Query: 249 -------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISAD 299 + F+ M K A +AG+ S H +R AT + Sbjct: 185 ARPALLAGRKCDALFVTVRCAGMTRQMAWNLVKKYARQAGITVPLSPHTLRHAFATHLLN 244 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 GA + G + + YT A R RL ++R Sbjct: 245 HGADLRAVQLLLGHADISTTQIYTHVA-RERLKQLHARHHPR 285 >gi|154496597|ref|ZP_02035293.1| hypothetical protein BACCAP_00889 [Bacteroides capillosus ATCC 29799] gi|150274230|gb|EDN01321.1| hypothetical protein BACCAP_00889 [Bacteroides capillosus ATCC 29799] Length = 377 Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats. Identities = 51/354 (14%), Positives = 105/354 (29%), Gaps = 44/354 (12%) Query: 20 KIIYYF----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75 K Y + R GRR++ + + A L + E + TL + Sbjct: 17 KAYYVYMDYGRDEDGRRVKKYRTCAT--LAAARRVLREFQSELESRQQVAPRALTLDQWL 74 Query: 76 SEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVE----SRKHTP 130 + + + A + + + + GD +K+T +H++ + +P Sbjct: 75 EYWMEQVVEPNRAETTIYGYRKIIDNHLSDALGDIPVQKLTPRHLQEYYAMLMRDKGLSP 134 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 ++ + + AVRQ+ + +P VE P+ + + + +EG+ Sbjct: 135 NTVRRHHDLLSAALHTAVRQDIILRSPTERVEPPRVVPRE-VGYYGPEELKKLYALAEGT 193 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------------------- 231 L + GLR + C + I T Sbjct: 194 GLELVVKLAGMLGLRREEICGLQWSSVDFAQRRIHICAARTAAGGEIIQKETKNRSSTRV 253 Query: 232 -----------IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280 L +++ ++ S+ F + Sbjct: 254 LHMSDELVRLLRRERAGQAENRLALGDKWEDSGLVAVDHMGHPLSPNAVSLAFTRFIRRN 313 Query: 281 GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLG 332 + K + HG+R AT+++ GA ++ G T YT D+ Sbjct: 314 NLPKITLHGLRHTFATVASAQGAPLFDIGKALGHSTPATTGRIYTHLLDQNHEA 367 >gi|153805941|ref|ZP_01958609.1| hypothetical protein BACCAC_00181 [Bacteroides caccae ATCC 43185] gi|149130618|gb|EDM21824.1| hypothetical protein BACCAC_00181 [Bacteroides caccae ATCC 43185] Length = 293 Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats. Identities = 45/276 (16%), Positives = 93/276 (33%), Gaps = 24/276 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSGV---ES 125 LI + + + + + +++ Q+ G F+ ++ + IR + Sbjct: 2 LIKSFLDYLRYERNYSEKTVLAYSEDIKQLQEFAQEEYGRFNPLEVEAELIREWIVSLMD 61 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 R +T +S + L+S+R +K+ +RQ V +P + PK K + +M + Sbjct: 62 RGYTSTSVNRKLSSLRSFYKYLLRQGEVTKDPLCKITGPKNKKPLPVFLKESEMNKLLDE 121 Query: 186 W-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPD 239 +G + RL E +G+R S+ + + + T K + D Sbjct: 122 TDFGEGFKGYRDRLIIEVFYATGIRLSELIGLDDKDVDFSASLLKVTGKRNKQRLIPFGD 181 Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQ--------FSIWFKAKATKA--GVNKSAHGV 289 +L+ + + K +K +S H + Sbjct: 182 ELRELMLGYINIRNEMIPERSEAFFVRENGERLYKNLVYNLVKRNLSKVVTLKKRSPHVL 241 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 R AT + A + G +++ E YT Sbjct: 242 RHTFATTMLNNDAELGAVKELLGHESIATTEIYTHA 277 >gi|88861277|ref|ZP_01135909.1| site-specific recombinase [Pseudoalteromonas tunicata D2] gi|88816758|gb|EAR26581.1| site-specific recombinase [Pseudoalteromonas tunicata D2] Length = 305 Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats. Identities = 41/279 (14%), Positives = 99/279 (35%), Gaps = 22/279 (7%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKH-- 128 + +Y K + ++++ + + ++ + + K+ + +R+ S K Sbjct: 16 EVFLQYLKYE--KNYSIHTLLQYRLQLVEVANFLQNKAESWLKVQPEQLRAYSMSLKARA 73 Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + + L+ +R +K+ ++ NP +++ PK + + + M Q + Sbjct: 74 LSARTINLKLSCVRSFYKYLQIRKTELNNPAEAIKGPKFQKPLPKNLDVDQMHQLLAMNP 133 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMK 243 E S + + E + SGLR S+ A + + I+ K + + ++ Sbjct: 134 EDSFGFRDKAMMELMYSSGLRVSELVNANLIDVNLREKEIRVLGKGNKERILPIGGKAIE 193 Query: 244 LLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293 L + F F++ K +++ Q K G+ H +R Sbjct: 194 ALQDWLKCRAEFALPDEVAVFVSKKKCRISTRQVRARMKLWGINQGISSQIHPHKLRHSF 253 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 A+ ++ + G ++ + YT D L Sbjct: 254 ASHMLESSGDLRAVQELLGHSSLSATQVYTH-LDFQHLA 291 >gi|312884205|ref|ZP_07743916.1| site-specific tyrosine recombinase XerC [Vibrio caribbenthicus ATCC BAA-2122] gi|309368133|gb|EFP95674.1| site-specific tyrosine recombinase XerC [Vibrio caribbenthicus ATCC BAA-2122] Length = 310 Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats. Identities = 38/279 (13%), Positives = 95/279 (34%), Gaps = 21/279 (7%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRS---GVESRK 127 L++ Y L+++++ +++ + + + + G D+ + +R Sbjct: 16 LVNFYEYLRAEKGLSLHTQRNYKQQLETMAFQLVQLGIEDWSSVDAAWVRQLASKGMRDG 75 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 SS L+S+R F + + + +A NP V P++K + +++ Q Sbjct: 76 MKASSLATRLSSLRAFFDFLILRGEIAANPAKGVSAPRKKRPLPKNLDVDEVNQLLEVDE 135 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243 + + R E + +GLR ++ ++ ++ + ++ V + Sbjct: 136 DDPLAVRDRAIMELMYGAGLRLAELVNVDLKDIRTSRGELRVVGKGEKERKVPFAGQAVI 195 Query: 244 LLAMTPIGKETFFINNDKQ--------KMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293 + + N+ +++ K V + S H +R Sbjct: 196 WVEKWLRVRGQLSDPNESALFVSKLGGRISHRSVQKRMAEWGQKQAVSSHISPHKLRHSF 255 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 AT ++ + G + + + YT D L Sbjct: 256 ATHMLESSQNLRAVQELLGHENISTTQIYTH-LDFQHLA 293 >gi|292486680|ref|YP_003529550.1| tyrosine recombinase xerC [Erwinia amylovora CFBP1430] gi|292897917|ref|YP_003537286.1| tyrosine recombinase [Erwinia amylovora ATCC 49946] gi|291197765|emb|CBJ44860.1| tyrosine recombinase [Erwinia amylovora ATCC 49946] gi|291552097|emb|CBA19134.1| Tyrosine recombinase xerC [Erwinia amylovora CFBP1430] Length = 302 Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats. Identities = 41/275 (14%), Positives = 88/275 (32%), Gaps = 22/275 (8%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIR---SGVESRKHTP 130 Y K L+ +++++ I + + ++ ++ +R + P Sbjct: 16 RYLK--VERQLSPLTQVNYRRQLSAIIVLLDELKVVEWARLDASLVRSLAARSTRSGLKP 73 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 +S L+++R W V Q + NP V P+ + +++ + Sbjct: 74 ASLALRLSALRSFLDWLVSQGAIKANPAKGVATPRAARHLPKNIDVDEVNRLLEIDLNDP 133 Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLA 246 + R E + +GLR S+ + HL + K + + + + Sbjct: 134 LAVRDRAMLEAMYGAGLRLSELVGIDLGHLDLASGEVWVIGKGSKERRLPMGRTAVHWVE 193 Query: 247 MTPIGKETFFIN-------NDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297 +E F N ++++ F K GV + H +R AT Sbjct: 194 NWLAMRELFEPQDNALFLSNQGKRISTRNVQKRFAEWGVKQGVSSHIHPHKLRHSFATHM 253 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 ++ + G + + YT D L Sbjct: 254 LESSGDLRAVQELLGHANLTTTQIYTH-LDFQHLA 287 >gi|169827113|ref|YP_001697271.1| tyrosine recombinase xerC [Lysinibacillus sphaericus C3-41] gi|168991601|gb|ACA39141.1| Tyrosine recombinase xerC [Lysinibacillus sphaericus C3-41] Length = 299 Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats. Identities = 42/277 (15%), Positives = 90/277 (32%), Gaps = 24/277 (8%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR-- 126 + ++ + +V++ +ES + G D + H R V Sbjct: 7 DALEQFMLYIQVEKNFSVHTVREYESDLLDFLAFLQREGINDLASVEYIHARLYVTKLYD 66 Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 K +S + ++S+R F++ RQ S+ PK+++ + +E++ Q Sbjct: 67 EKRARASISRKISSIRSFFRFLNRQYGFDDGAFRSLYHPKKESRLPNFFYEEELMQLFDA 126 Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--IITVELPD 239 + + + E L +G+R S+ V+ + + I+ G I Sbjct: 127 NTGDDLKSLRNMAILELLYATGIRVSELTSIQVKDVDFHYSIIRVMGKGRKERIIPFGQF 186 Query: 240 GFMKLLAMTPIGKETFFINNDKQKM---------NATQFSIWFKAKATKAGVNKS--AHG 288 + +L + + Q++ KA ++ H Sbjct: 187 ASLAMLDYIEQARPRLMKKTNHQQLFVNMRGGELTPRGVRHVLNEMIDKASLHTKIYPHM 246 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 +R AT + GA + G + + YT Sbjct: 247 LRHTFATHLLNNGADLRTVQELLGHSHLSSTQVYTHV 283 >gi|294787035|ref|ZP_06752289.1| site-specific recombinase, phage integrase family [Parascardovia denticolens F0305] gi|315226683|ref|ZP_07868471.1| tyrosine recombinase XerC [Parascardovia denticolens DSM 10105] gi|294485868|gb|EFG33502.1| site-specific recombinase, phage integrase family [Parascardovia denticolens F0305] gi|315120815|gb|EFT83947.1| tyrosine recombinase XerC [Parascardovia denticolens DSM 10105] Length = 334 Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats. Identities = 54/317 (17%), Positives = 96/317 (30%), Gaps = 61/317 (19%) Query: 71 LKWLISEY-RKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGV--E 124 L+ +Y L+ S ++ES D + G D + I T ++R + E Sbjct: 3 FAELLHDYCLFLKDSKGLSPQSLKAYESDVDQCLHFLCLHGRTDIQSINTDYLRMWMSYE 62 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 SRK SS + + ++R F + + + NP + PK T++ + Sbjct: 63 SRKVAKSSLARKIVAVRGFFAYLYTHKLIPSNPARPLGTPKLPKTLPAVLTQKQAVRLMD 122 Query: 185 FWSE---------------------------------GSQPRLAFEFLLYSGLRCSDSCR 211 E + E L +G+R ++ Sbjct: 123 QAEEVCERDRDGQADRAETGKAKAELSKAEAEKKTLLDMRDDAIMEVLYATGIRVAELVS 182 Query: 212 AGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMTPIGKET---------------- 254 V + + T K V + L Sbjct: 183 LDVDDIDFTTRTVKVTGKGNKQRVVPFGKPAAEALDRWIRQGRDGLLDQAAPSAAQGSAA 242 Query: 255 ----FFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMA 309 F+ + +++N Q A +AGV S H +R +AT D GA E+ Sbjct: 243 DRSAVFVGSRGKRINQRQVREVVHRLAREAGVPDISPHALRHSAATHLLDGGADLREVQE 302 Query: 310 TYGWKTVDQAETYTKGA 326 G ++ + YT + Sbjct: 303 MLGHSSLQTTQRYTHVS 319 >gi|218767874|ref|YP_002342386.1| putative integrase/recombinase [Neisseria meningitidis Z2491] gi|34223068|sp|Q9JV76|XERD_NEIMA RecName: Full=Tyrosine recombinase xerD gi|121051882|emb|CAM08188.1| putative integrase/recombinase [Neisseria meningitidis Z2491] gi|319410121|emb|CBY90457.1| tyrosine recombinase XerD [Neisseria meningitidis WUE 2594] Length = 291 Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats. Identities = 43/273 (15%), Positives = 93/273 (34%), Gaps = 19/273 (6%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTP 130 LI ++ L N+ + ++I R+ + + + V Sbjct: 5 LIDRLLETLWLDRRLNQNTLNGYRRDLEKIARRLSQSGRMLKDADEADLAAAVYVDGEQR 64 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---- 186 SS + L++ + L+ W R+ NP ++ PK T++ + + + Sbjct: 65 SSQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLLAAPDTDT 124 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL 245 G + + E + +GLR S++ ++ + I K V + + Sbjct: 125 PHGLRDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITALGKGDKQRMVPMGQESAYWV 184 Query: 246 AMTPIG----------KETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294 + F++ K ++ + K A++AG+ + S H +R A Sbjct: 185 GRYYTEARPALLKGRSCDALFVSQKKTGISRQLAWMIVKEYASQAGIGHISPHSLRHAFA 244 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGAD 327 T G + G ++ + YT A+ Sbjct: 245 THLVQHGLDLRVVQDMLGHADLNTTQIYTHVAN 277 >gi|313901986|ref|ZP_07835402.1| integrase family protein [Thermaerobacter subterraneus DSM 13965] gi|313467775|gb|EFR63273.1| integrase family protein [Thermaerobacter subterraneus DSM 13965] Length = 380 Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats. Identities = 47/295 (15%), Positives = 97/295 (32%), Gaps = 36/295 (12%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD------YRKITTKHIRSGVE 124 ++ Y L+ + ++ ++ G ++ + +R + Sbjct: 23 ADVVEAYLDHLRLERGLSPRTVEAYAGDLAGWLQFLGLEPPVGAAALAGVSGRDLRRWLA 82 Query: 125 SRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + +S + L ++R LF++AVR+ ++A +P + P+ + R +T E+ Q Sbjct: 83 HLEERGLARASVARKLAAVRGLFRYAVREGWLAASPAARLATPRLRRRLPRVYTPEEAQA 142 Query: 182 FKSFWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITV 235 + G + R E L GLR ++ + + ++ G + Sbjct: 143 LLEAAASGHGPAALRDRAILELLYGCGLRVAELSGLDLDDVDLEGGWLRVYGKGGKERIL 202 Query: 236 ELPDGFMKLL------------------AMTPIGKETFFINNDKQKMNATQFSIWFKAK- 276 L L P + F+N +++ + Sbjct: 203 PLAGPVAAALRAYLEEGRPGFLEGRRHRPCRPADAQAVFLNRWGGRLSPRGIQAIVRRVG 262 Query: 277 ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 A A + H +R AT D GA + G ++ + YT R RL Sbjct: 263 AVVARLQAHPHLLRHTFATHLLDGGAGLRAVQELLGHASLAATQVYTH-VSRARL 316 >gi|268592909|ref|ZP_06127130.1| tyrosine recombinase XerC [Providencia rettgeri DSM 1131] gi|291311699|gb|EFE52152.1| tyrosine recombinase XerC [Providencia rettgeri DSM 1131] Length = 309 Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats. Identities = 46/279 (16%), Positives = 92/279 (32%), Gaps = 22/279 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRKHTP 130 I + L+ + ++ I+ + + + +R+ + + Sbjct: 17 IEAFLYYLRVERRLSPVTITNYRRQLSVIVEMLALLNIHEWQKVDATIVRNIAAKSRKSG 76 Query: 131 SSAIQ---FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 A L+S+R F W V+Q + NP ++ PK K + +++ Q + S Sbjct: 77 LQAASMALRLSSLRSFFDWMVQQGELPANPAKAIHAPKSKKRLPKNMDVDEVSQLLNMDS 136 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243 + R E + +GLR S+ V+HL N K V + + Sbjct: 137 GDPLVVRDRTMLEVMYGAGLRLSELVGLDVRHLDLNTGEVWVMGKGSKERRVPMGKTAVS 196 Query: 244 LLAMTPIGKETFFI--------NNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293 L +E + ++++ F+ K GV + + H +R Sbjct: 197 WLQRWLEMRELYDPEDDAVFISTQSGKRISNRNVQKRFEQWGIKQGVNSHINPHKLRHSF 256 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 AT ++ + G + + YT D L Sbjct: 257 ATHILESSGNLRGVQELLGHANLSTTQIYTH-LDFQHLA 294 >gi|229815416|ref|ZP_04445748.1| hypothetical protein COLINT_02464 [Collinsella intestinalis DSM 13280] gi|229808949|gb|EEP44719.1| hypothetical protein COLINT_02464 [Collinsella intestinalis DSM 13280] Length = 308 Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats. Identities = 39/280 (13%), Positives = 86/280 (30%), Gaps = 28/280 (10%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRKHTPSSAIQFLTSM 140 L+ + ++ + + + + + ++ L+++ Sbjct: 26 GLSPETVRAYGQHLEAYADWCESHAVDGLDPSSRDLRSYLAEFRRDGRASTTVAAHLSAL 85 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAF 196 R F+W + A L+ PK++ E T E++ G + Sbjct: 86 RSFFRWLEYSGHRAGAVPLATVAPKQRRELPHVLTAEELAALFDAPDLSCPVGLRDAAML 145 Query: 197 EFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELPDGFMKLLAMTPIG---- 251 E + +G R S+ R + + K V L +++ Sbjct: 146 ELFIATGARISELSRLELGDVCVAERQVCLLGKGSKERIVPLYARAIEVYERYLENGRPN 205 Query: 252 -----------KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISA 298 F+++ + MN+ F KAG+ + + H +R AT Sbjct: 206 LLRAPALGGDACRAVFVSDRGRAMNSDALRYRFDVLKRKAGISSDITPHAMRHTFATELL 265 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337 GA + G ++ + YT DR++ + + Sbjct: 266 GGGADLRSVQELLGHASLSTTQIYTHLTPDRLKSAVARAH 305 >gi|153830013|ref|ZP_01982680.1| tyrosine recombinase XerC [Vibrio cholerae 623-39] gi|148874498|gb|EDL72633.1| tyrosine recombinase XerC [Vibrio cholerae 623-39] Length = 311 Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats. Identities = 40/303 (13%), Positives = 100/303 (33%), Gaps = 24/303 (7%) Query: 68 PTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRS-- 121 P L + + H L++ ++ +++ + + + G + ++ + +R Sbjct: 10 PDALAQPLERFYAYLHTEKGLSLYTQRNYKQQLETMTQYLVQVGLTHWSQLDSAWVRQLV 69 Query: 122 -GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + + SS L+S+R + + + + NP V P+++ + ++M Sbjct: 70 MQGKRQGMKASSIATRLSSLRSFLDFLILRGELEANPAKGVSAPRKQRTLPKNLDVDEMA 129 Query: 181 QFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236 Q + + R E + +GLR ++ V+ + + I+ V Sbjct: 130 QLLEVTDDDPLSIRDRAIMELMYGAGLRLAELVSIDVKDVNLSEGEIRVIGKGNKERKVW 189 Query: 237 LPDGFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 + + + F++ +++ K V + S Sbjct: 190 FAGQAQEWVGKWLKLRSQLADSAETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISP 249 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG--IKNSRRISSVVD 344 H +R AT ++ + G + + + YT D L + + + Sbjct: 250 HKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTH-LDFQHLAQVYDQAHPRARKKN 308 Query: 345 SDD 347 DD Sbjct: 309 KDD 311 >gi|229165299|ref|ZP_04293086.1| Prophage LambdaBa04, site-specific recombinase, phage integrase [Bacillus cereus AH621] gi|228618124|gb|EEK75162.1| Prophage LambdaBa04, site-specific recombinase, phage integrase [Bacillus cereus AH621] Length = 374 Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats. Identities = 49/352 (13%), Positives = 105/352 (29%), Gaps = 42/352 (11%) Query: 15 RTRHGKIIYYFRKGH----GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 R R K + G G+R + T A A + + K T Sbjct: 6 RKRGEKWSFTIDIGRDPLTGKRKQKTASGFKTKKEA-ERACNDLIHQFNTGSLVDDKNLT 64 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH- 128 L + E+ ++ + + +++ + +II G + + H + V+S Sbjct: 65 LSEYLQEWLENTAKQRVRETTFTNYKRAVNNRIIPVLGSHKLKDLKPLHGQRFVKSLIDE 124 Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-SF 185 +P ++ + AV+ E + NP VE P+ + W+ E+ + F Sbjct: 125 ELSPKYIEYIFIVLKGALEDAVKWELLYKNPFEHVEIPRPRKVVNNTWSIEETKTFLTYA 184 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-----------------QNNIFSIKTQK 228 + F L +G+R + +++ + F+ Sbjct: 185 KFDNPIYYHLFLLALNTGMRRGELLGLKWKNVDLVEGKISVTETLIYDERGFRFTEPKTS 244 Query: 229 TGTIITVELPDGFMK-------------LLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275 + + + + F D Q + + F+ Sbjct: 245 GSKRLISIDQTLCKEFKSYKAKQNEFKLAIGTAYEDHDLVFCREDGQPIYPRTLTTIFER 304 Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325 + + K H +R AT+ G + G ++ +TY+ Sbjct: 305 VVKTSKIPKIRFHDLRHTHATLLLKLGINPKIVSERLGHSSIKTTLDTYSHV 356 >gi|300812249|ref|ZP_07092687.1| tyrosine recombinase XerC [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496763|gb|EFK31847.1| tyrosine recombinase XerC [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|325686014|gb|EGD28073.1| site-specific tyrosine recombinase XerC [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 295 Score = 122 bits (307), Expect = 7e-26, Method: Composition-based stats. Identities = 42/298 (14%), Positives = 107/298 (35%), Gaps = 27/298 (9%) Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFD-YRKITTKHIRSGVE 124 TL+ Y K+ S + + ++++ + +++G F + +I+ + + + Sbjct: 1 MTLEEQFLSYLKNE--RSYSPKTVLAYQKDLAAAKKFWQENGGFPGWDQISRRDLEIYLL 58 Query: 125 SRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + S+ + L+S++ ++ R+ V +P ++++ + K + + ++++ Q Sbjct: 59 ATGQKLASSTLSRKLSSLKSFYRLLTRRGLVKADPTVAIQLRRGKKKLPEFFYQDEVGQV 118 Query: 183 KSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVEL 237 ++G + R +G+R S+ ++ L I K V Sbjct: 119 IRSLNDGKPLTVRNRAIVALFYATGMRLSELTDLKIKQLDLENGMILVHGKGNKDRYVFF 178 Query: 238 PDGFMKLLAMTPIGKET-----------FFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284 K L F+N + +++ + + KAG+ Sbjct: 179 DQESKKYLEEYLQAARPSLLKNEPDTGAVFLNKLGRPISSRGIAKAVQQIFQKAGLTAGA 238 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342 H +R AT + GA + G + + + YT + + L + + Sbjct: 239 HPHELRHSFATAMLNNGADLRSVQELLGHEDLSTTQIYTHVSMQ-HLTAEYRQHFPRK 295 >gi|254804308|ref|YP_003082529.1| site-specific recombinase [Neisseria meningitidis alpha14] gi|254667850|emb|CBA03883.1| site-specific recombinase [Neisseria meningitidis alpha14] Length = 305 Score = 122 bits (307), Expect = 7e-26, Method: Composition-based stats. Identities = 39/293 (13%), Positives = 88/293 (30%), Gaps = 30/293 (10%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGV 123 Y ++ + ++ ++ +++ + ++ + + + Sbjct: 6 FAAHFDAYLENIVREGKSEHTVAAYRRDLEELFALLAQMPSEDAGGVPQDLSRRDFTAAL 65 Query: 124 ESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + + L+S R W V + + +P ++ PK+ + +E + Sbjct: 66 RRLSQRGLNARTLARKLSSWRQYCVWLVERGLLHTDPTADIKPPKQPERVPKALPQEWLN 125 Query: 181 QFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIIT 234 + +G + FE + SGLR S+ + + + T K Sbjct: 126 RMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQ 185 Query: 235 VELPDGFMKLLAMTPIGKETFFIN---NDKQKMNATQFSIWFKAKATKA-----GVNKSA 286 V L ++ L ++T + K A A G + S Sbjct: 186 VPLVGKSVEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHVSP 245 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 H +R A A + G ++ + YTK L + R+ Sbjct: 246 HMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK------LDFDHIARL 292 >gi|229525024|ref|ZP_04414429.1| tyrosine recombinase XerC [Vibrio cholerae bv. albensis VL426] gi|229338605|gb|EEO03622.1| tyrosine recombinase XerC [Vibrio cholerae bv. albensis VL426] Length = 311 Score = 122 bits (307), Expect = 7e-26, Method: Composition-based stats. Identities = 40/303 (13%), Positives = 99/303 (32%), Gaps = 24/303 (7%) Query: 68 PTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRS-- 121 P L + + H L++ ++ +++ + + + G + ++ +R Sbjct: 10 PDALAQPLERFYAYLHTEKGLSLYTQRNYKQQLETMTQYLVQVGLTHWTQLDAAWVRQLV 69 Query: 122 -GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + + SS L+S+R + + + + NP V P+++ + ++M Sbjct: 70 MQGKRQGMKASSIATRLSSLRSFLDFLILRGELQANPAKGVSAPRKQRTLPKNLDVDEMA 129 Query: 181 QFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236 Q + + R E + +GLR ++ V+ + + I+ V Sbjct: 130 QLLEVTDDDPLSIRDRAIMELMYGAGLRLAELVSIDVKDVNLSEGEIRVIGKGNKERKVW 189 Query: 237 LPDGFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 + + + F++ +++ K V + S Sbjct: 190 FAGQAQEWVGKWLKLRSQLADSAETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISP 249 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG--IKNSRRISSVVD 344 H +R AT ++ + G + + + YT D L + + + Sbjct: 250 HKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTH-LDFQHLAQVYDQAHPRARKKN 308 Query: 345 SDD 347 DD Sbjct: 309 KDD 311 >gi|50123101|ref|YP_052268.1| site-specific tyrosine recombinase XerC [Pectobacterium atrosepticum SCRI1043] gi|49613627|emb|CAG77078.1| integrase/recombinase [Pectobacterium atrosepticum SCRI1043] Length = 311 Score = 122 bits (307), Expect = 7e-26, Method: Composition-based stats. Identities = 43/278 (15%), Positives = 90/278 (32%), Gaps = 21/278 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESRKHTP 130 + + + L+ + S+ I+ +G D+R + +RS V K Sbjct: 20 VDAFLRYLKVERQLSPLTLTSYSRQLSAVITILSAAGIADWRALDASSVRSVVSRSKRDG 79 Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S L+++R W V + + NP V P+ + +++ + Sbjct: 80 LHSGSLALRLSALRSFLDWMVSRGVLTANPAKGVSTPRAGRPLPKNMDVDEVNRLLEIDL 139 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243 + + R E + +GLR ++ QH+ + K + + + Sbjct: 140 DDPLAVRDRTMLEVMYGAGLRLAELVGMDYQHIDLASGEIWVMGKGSKERKLPIGKTAVT 199 Query: 244 LLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 L + FI+N ++++ F K G+ + H +R A Sbjct: 200 WLERWLALRELFGPQDDAVFISNQGRRISMRNVQKRFAEWGVKQGINSHVHPHKLRHSFA 259 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 T ++ + G + + YT D L Sbjct: 260 THMLESSGDLRAVQELLGHANLTTTQIYTH-LDFQHLA 296 >gi|187250579|ref|YP_001875061.1| integrase family protein [Elusimicrobium minutum Pei191] gi|186970739|gb|ACC97724.1| Integrase family protein [Elusimicrobium minutum Pei191] Length = 295 Score = 122 bits (307), Expect = 7e-26, Method: Composition-based stats. Identities = 43/296 (14%), Positives = 105/296 (35%), Gaps = 28/296 (9%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSG---VES 125 LI+++ S + + ++ ++ + + + + T +R Sbjct: 5 ASLINKFILSLQSKNFSRHTLRAYTADLKDVENYMAEHNLTAAEFFTHTKLRGYLGVTSE 64 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-- 183 + ++ ++ ++ MR K+ ++ E + NP + PKR+ + T+E+ + Sbjct: 65 GDYKKNTVLRKISVMRSFAKYLLKHEVIKNNPFKLLPLPKREKLLPKFLTQEETDRLIDT 124 Query: 184 --SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDG 240 + ++ + FE + SGLR S+ ++ + N+ ++ V + D Sbjct: 125 AANQGKLPARDKALFELIYSSGLRRSEVTGLSIKDIDLNLGVVRVMGKGSKERLVPITDL 184 Query: 241 FMKLLAMTPIGKETFFINNDKQ------KMNATQFSIWFKAKATKAGV--NKSAHGVRKF 292 ++ L + + + ++ + K KA + +AH +R Sbjct: 185 AIEALKEYLSTRGVYNSGDPLFLNRLGGRLTGDGLAYLVKNITIKANLARKVTAHSLRHS 244 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 AT + G L G K++ + YT + R+ + P Sbjct: 245 FATHMLNNGCDLRSLQEMLGHKSLSATQVYTHVS---------LDRLKKIYGQTHP 291 >gi|56697962|ref|YP_168333.1| site-specific tyrosine recombinase XerC [Ruegeria pomeroyi DSS-3] gi|56679699|gb|AAV96365.1| tyrosine recombinase XerC [Ruegeria pomeroyi DSS-3] Length = 306 Score = 122 bits (307), Expect = 7e-26, Method: Composition-based stats. Identities = 37/290 (12%), Positives = 80/290 (27%), Gaps = 29/290 (10%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYF--------DQIIRKSGDFDYRKITTKHIRSG 122 + + + + A N+ ++ + G +I +R+ Sbjct: 9 RDALQLWLDTQRALAGRAENTITAYRTDVVEFMSFMTLHFGATQGLAPLARIGVPDMRAW 68 Query: 123 VESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + + S + L++++ ++W +E LS PK + + RP ++ Sbjct: 69 MAQMRADGIGARSLARKLSAVKSFYRWLAEREGFEPTAVLSTRAPKFQRKLPRPLAEDAA 128 Query: 180 QQFKS-------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 + ++ L GLR S++ + K G Sbjct: 129 RAMIDTVELQSSKPWIAARDMAVVTLLYGCGLRISEALSLTGRAAPLPATLRIRGKGGKE 188 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGVNKS 285 V + + +NA + G+ + Sbjct: 189 RLVPVIPVARAAVDTYLRLCPWPVEPETPLFRGARGGPLNARSIQAVMAKARMQLGLPAT 248 Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 H +R AT +AG + G ++ + YT D L Sbjct: 249 ATPHAMRHSFATHLLEAGGDLRAIQELLGHASLSTTQAYT-AVDTAHLMD 297 >gi|45657471|ref|YP_001557.1| putative integrase/recombinase protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45600710|gb|AAS70194.1| putative integrase/recombinase protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 332 Score = 122 bits (307), Expect = 7e-26, Method: Composition-based stats. Identities = 53/303 (17%), Positives = 96/303 (31%), Gaps = 28/303 (9%) Query: 64 PRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIR 120 P +L ++ + + N+ ++ D +I IR Sbjct: 30 PEFSSESLNETAKKFINYLKIEKNYSQNTINAYSIDLKFFFEFCEKEQLDIFQIEPVDIR 89 Query: 121 SGVESRKHT----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 S S + L+S+R +K +R++ V NP + PK + E + + Sbjct: 90 SYFAYLAKKHEIDRRSQSRKLSSLRTFYKVLLREDLVKSNPATQLSFPKVRKEVPKNFRI 149 Query: 177 EDMQQFKSFWSEGS------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKT 229 + ++ F SE + + R E L SGLR + A + L ++ K Sbjct: 150 NETEEILEFESENASEVSEIRDRAMIEVLYSSGLRVFELVNAKLNSLSKDLTVLKVLGKG 209 Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFI-------NNDKQKMNATQFSIWFKAKATKAGV 282 V + L + F N +K+ + K G Sbjct: 210 RKERFVYFGKEAVSSLQKYLEYRNVSFPDAEEIFLNQRGKKLTTRGVRYILNERRKKMGW 269 Query: 283 NKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI-----RLGIKN 335 K+ H R AT DAGA + G ++ + Y + R + Sbjct: 270 EKTITPHKFRHTFATDLLDAGAEIRAVQELLGHSSLSTTQIYLSVSKEKIKEVYRKAHPH 329 Query: 336 SRR 338 +R+ Sbjct: 330 ARK 332 >gi|308389967|gb|ADO32287.1| putative integrase/recombinase [Neisseria meningitidis alpha710] gi|325131510|gb|EGC54217.1| tyrosine recombinase XerC [Neisseria meningitidis M6190] gi|325139236|gb|EGC61782.1| tyrosine recombinase XerC [Neisseria meningitidis ES14902] Length = 305 Score = 122 bits (307), Expect = 7e-26, Method: Composition-based stats. Identities = 39/293 (13%), Positives = 88/293 (30%), Gaps = 30/293 (10%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGV 123 Y ++ + ++ ++ +++ + ++ + + + Sbjct: 6 FAAHFDAYLENIVREGKSEHTVAAYRRDLEELFALLAQMPSEDAGGVPQDLSRRDFTAAL 65 Query: 124 ESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + + L+S R W V + + +P ++ PK+ + +E + Sbjct: 66 RRLSQRGLNARTLARKLSSWRQYCVWLVERGLLHTDPTADIKPPKQPERVPKALPQEWLN 125 Query: 181 QFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIIT 234 + +G + FE + SGLR S+ + + + T K Sbjct: 126 RMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQ 185 Query: 235 VELPDGFMKLLAMTPIGKETFFIN---NDKQKMNATQFSIWFKAKATKA-----GVNKSA 286 V L ++ L ++T + K A A G + S Sbjct: 186 VPLTGKSVEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHVSP 245 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 H +R A A + G ++ + YTK L + R+ Sbjct: 246 HMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK------LDFDHIARL 292 >gi|269795295|ref|YP_003314750.1| tyrosine recombinase XerD [Sanguibacter keddieii DSM 10542] gi|269097480|gb|ACZ21916.1| tyrosine recombinase XerD [Sanguibacter keddieii DSM 10542] Length = 317 Score = 122 bits (307), Expect = 7e-26, Method: Composition-based stats. Identities = 45/287 (15%), Positives = 84/287 (29%), Gaps = 34/287 (11%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSG----- 122 L+ + Y + N+ ++ D+ + D +TT + Sbjct: 11 LRRAVQGYLDHLTIERGRSTNTVAAYRRDLDRYVAYLESLDLALEDVTTTVVEDYVTVVR 70 Query: 123 ---VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 SA + L ++R + V + NP V P + + + D+ Sbjct: 71 TGSDGRSALAAGSAARSLAAVRGWHTFCVAEGLAPANPTAGVRPPSQGKRLPKAISTYDV 130 Query: 180 QQFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--- 231 ++ + G + R E L +G R S++ V L + G Sbjct: 131 ERLLAAAGAGDTVASVRNRALLELLYSTGARISEAVTLDVDDLDLTPGLESVRLFGKGSK 190 Query: 232 -----------IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280 +L G F+N +++ + A A Sbjct: 191 ERVVPVGSFAVEAIQAYLVRARPVLMAAGRGTPAVFLNTRGARLSRQSAWQVLRTSAETA 250 Query: 281 GVNK----SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 G++ S H +R AT GA + G +V + YT Sbjct: 251 GLDGAEHISPHTLRHSFATHLLSGGADVRVVQELLGHASVTTTQLYT 297 >gi|258405471|ref|YP_003198213.1| tyrosine recombinase XerD [Desulfohalobium retbaense DSM 5692] gi|257797698|gb|ACV68635.1| tyrosine recombinase XerD [Desulfohalobium retbaense DSM 5692] Length = 306 Score = 122 bits (307), Expect = 7e-26, Method: Composition-based stats. Identities = 48/284 (16%), Positives = 87/284 (30%), Gaps = 22/284 (7%) Query: 73 WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHT 129 Y + LA S ++ + I+ + K Sbjct: 13 AWKDAYVEHLLVIKGLADPSVAAYVQDIEMFIQFLEQKGESVATCDANAFLYFLLHLKSR 72 Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + + L+S+R F++ +P V+ PK + ++MQ + Sbjct: 73 GLTNRTIARHLSSLRGFFQFLQTSNRRVDDPTAHVDGPKLTRQLPEFLDVQEMQGLLAQP 132 Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGF 241 G+ + R E L +GLR S+ R + + ++ G V L Sbjct: 133 DTGTKLGFRDRTILELLYAAGLRVSEVIRLQALDIDSQTGVVRVWGKGAKERLVPLHPAA 192 Query: 242 MKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKAGVNKS--AHGVRK 291 + + F K + ++ K A AG+ +S H +R Sbjct: 193 LDYVRTYVQAWRPQFAPQHKVLFLNRSGRCLSRQAVWKNVKRYAVAAGIRRSISPHTIRH 252 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIK 334 AT + GA + G + E YT A R+R + Sbjct: 253 SFATHLLEGGADLRTVQLLLGHADISATEIYTHVQAGRLRAAHQ 296 >gi|84517249|ref|ZP_01004604.1| Site-specific recombinase XerD-like [Loktanella vestfoldensis SKA53] gi|84508924|gb|EAQ05386.1| Site-specific recombinase XerD-like [Loktanella vestfoldensis SKA53] Length = 401 Score = 122 bits (307), Expect = 7e-26, Method: Composition-based stats. Identities = 43/345 (12%), Positives = 100/345 (28%), Gaps = 23/345 (6%) Query: 13 KERTRHGKIIY-YFR--KGHGRRIRLPYPHESTFIPAYMSALTGSTPK-----REYINSP 64 + R G+ Y +R +G R +L T A S Sbjct: 36 EVRISGGRTFYLRYRDTRGKTRYAKLADAQHVTLHQARTLCGRMRNKIAMGINPSAEKSI 95 Query: 65 RKKPTTLKWLI-SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 +++ T Y + + + + +I G +I+T+ + + Sbjct: 96 KRQVPTFGDFAQDRYMPFSQANKRSWKTDETLIRT--HLIPTFGKMHLDEISTEDVLNMQ 153 Query: 124 E---SRKHTPSSAIQFLTSMRVLFKWAVRQEYV-----AINPCLSVERPKRKTEGIRPWT 175 + P S + L +R +F A R + + + + K E Sbjct: 154 QAGLKAGAAPGSVNRRLILLRYMFNLAWRDWKIAGVTENPTHGVRLLKENNKKERYVRAE 213 Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 + + S+ + FL+ +G R ++ A + + +T + Sbjct: 214 EMARLYDEVCGSQNIMLKHIVAFLVLTGARRNEVLHATWHDINMTTGKWRIPETKSGYAR 273 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNAT---QFSIWFKAKATKAGVN-KSAHGVRK 291 +P + + + + + +AG+ H +R Sbjct: 274 HVPLNDGAMAVLQQMQDVSRSQYIFGNPNTGKPYVHIYYAWDIARRRAGLPDVRMHDLRH 333 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 A++ + G++ + + G + + Y L + N Sbjct: 334 TFASLLVNNGSSLYAVQMLLGHTQIKTTQRYAHLTQETLLDVSNI 378 >gi|313123911|ref|YP_004034170.1| tyrosine recombinase xerc [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280474|gb|ADQ61193.1| Tyrosine recombinase xerC [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 295 Score = 122 bits (306), Expect = 7e-26, Method: Composition-based stats. Identities = 43/298 (14%), Positives = 108/298 (36%), Gaps = 27/298 (9%) Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFD-YRKITTKHIRSGVE 124 TL+ Y K+ S + + ++++ + +++G F + +I+ + + + Sbjct: 1 MTLEEQFLSYLKNE--RSYSPKTVLAYQKDLAAAKKFWQENGGFPGWDQISRRDLEIYLL 58 Query: 125 SRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + S+ + L+S++ ++ R+ V +P ++++ + K + + ++++ Q Sbjct: 59 ATGQKLASSTLSRKLSSLKSFYRLLTRRGLVKADPTVAIQLRRGKKKLPEFFYQDEVGQV 118 Query: 183 KSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVEL 237 ++G + R +G+R S+ ++ L I K V Sbjct: 119 IRSLNDGKPLTVRNRAIVALFYATGMRLSELTDLKIKQLDLENGMILVHGKGNKDRYVFF 178 Query: 238 PDGFMKLLAMT-----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284 K L E F+N + +++ + + KAG+ Sbjct: 179 DQESKKYLEEYLQAARPSLLKNEPDTEAVFLNKLGRPISSRGIAKAVQQIFQKAGLTAGA 238 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342 H +R AT + GA + G + + + YT + + L + + Sbjct: 239 HPHELRHSFATAMLNNGADLRSVQELLGHEDLSTTQIYTHVSMQ-HLTAEYRQHFPRK 295 >gi|288803800|ref|ZP_06409227.1| tyrosine recombinase XerD [Prevotella melaninogenica D18] gi|288333707|gb|EFC72155.1| tyrosine recombinase XerD [Prevotella melaninogenica D18] Length = 294 Score = 122 bits (306), Expect = 7e-26, Method: Composition-based stats. Identities = 41/275 (14%), Positives = 98/275 (35%), Gaps = 24/275 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVESRKHT 129 + ++ + + + + I++ + R + + I + +R+ +E Sbjct: 4 VEKFLDYIKFERNYSPMTVINYRKDLTEFERFYKELEPQLSWESIDSDIVRNWMEYMMDR 63 Query: 130 PSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ----- 181 +SA + L+++R +++A+R++ + +P ++ PK++ + + +M++ Sbjct: 64 GNSASSVNRRLSALRSFYQFALRRKLIEKDPVHGLQGPKKQKPLPQFLKESEMERLLDSK 123 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDG 240 + + R +G+R S+ + + N T K V Sbjct: 124 MWTDSYKDVLERTIIITFYVTGIRLSELIGLDDKDIDNVTCEVKVTGKRNKQRIVPFGKE 183 Query: 241 FMKLLAMTPIGKET--------FFINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGVR 290 + A + T FF ++M Q K +K +S H +R Sbjct: 184 LADVFAQYQEVRNTTVKGDSIAFFQTEKGKRMTTAQVRTLVKKNLSKVSTLKKRSPHVLR 243 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 AT + A + G +++ E YT Sbjct: 244 HTFATAMLNHEAGLESVKKLLGHESLSTTEIYTHT 278 >gi|256821403|ref|YP_003145366.1| tyrosine recombinase XerC [Kangiella koreensis DSM 16069] gi|256794942|gb|ACV25598.1| tyrosine recombinase XerC [Kangiella koreensis DSM 16069] Length = 299 Score = 122 bits (306), Expect = 7e-26, Method: Composition-based stats. Identities = 48/281 (17%), Positives = 105/281 (37%), Gaps = 24/281 (8%) Query: 75 ISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSGVESRKH-- 128 I Y H + ++ ++ ++++ D ++++ITT+ IR + R Sbjct: 5 IQRYLNRLLHEKRYSEHTVNNYRRQLERLLAFCHDAGYSNWQQITTQDIRMLIAKRHRQG 64 Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +PSS+ L++MR ++ + ++ + +NP + V PK+ + + + F Sbjct: 65 ASPSSSALQLSAMRRFLEFLLSEKKITVNPAVGVRGPKKAKRLPKNIDVDSLNHFLDQMP 124 Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFM 242 E + + E L SG+R ++ + L + S++ K + V + Sbjct: 125 EDEPIEVRDKAMMELLYSSGIRLAELSAMDIDDLSFSDQSLRVLGKGNKVREVPFGNSSK 184 Query: 243 KLLAMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRK 291 K+L++ + F N ++ K G+N H +R Sbjct: 185 KVLSLWLKERNNFAKNSDEKALFLSQQGNRLTNRAIQQRLAHWGKKLGLNDRLHPHKLRH 244 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 AT ++ + + G ++ + YT D L Sbjct: 245 SCATHVLESSSDLRAVQELLGHASISTTQIYTH-LDFQHLA 284 >gi|330997394|ref|ZP_08321245.1| putative tyrosine recombinase XerC [Paraprevotella xylaniphila YIT 11841] gi|329570768|gb|EGG52484.1| putative tyrosine recombinase XerC [Paraprevotella xylaniphila YIT 11841] Length = 293 Score = 122 bits (306), Expect = 7e-26, Method: Composition-based stats. Identities = 32/276 (11%), Positives = 93/276 (33%), Gaps = 24/276 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKH 128 + + + ++ + + + D + + +R + S Sbjct: 2 WTEAFLEYLTLERNYSLRTVEEYRDDLNAFESYYKKVDSTLSWETMDGDVVRDWMVSMME 61 Query: 129 TPSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS- 184 +A + L+++R +++ +R++++ ++P +++ PK+K + +M + Sbjct: 62 AGRTATTVNRRLSALRTFYRYLLRRDWIKVDPVRNIQGPKKKKPLPVFLKESEMNRLLDG 121 Query: 185 ----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 G + +L +G+R S+ Q + I+ + Sbjct: 122 DFFGNDFLGKRDKLIVNTFYVTGIRLSELTSLNNQDVDMWGGVIRVTGKRNKQRIVPFGD 181 Query: 241 FMKLLAMTPIGKET---------FFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGV 289 ++ L + +++ F++ +++ + + +S H + Sbjct: 182 ELEALLTAYLDEKSSLGLEDGGAMFVDEKGERLTNVKVRNLVRHYLGMVTTQKKRSPHVL 241 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 R AT + A L G +++ E YT Sbjct: 242 RHTFATSMLNHHADLESLKELLGHESISTTEIYTHT 277 >gi|254824662|ref|ZP_05229663.1| integrase/recombinase XerC [Listeria monocytogenes FSL J1-194] gi|293593901|gb|EFG01662.1| integrase/recombinase XerC [Listeria monocytogenes FSL J1-194] Length = 300 Score = 122 bits (306), Expect = 7e-26, Method: Composition-based stats. Identities = 35/274 (12%), Positives = 86/274 (31%), Gaps = 27/274 (9%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHIRSGVESRKHTP 130 +Y S + +VN+ ++E+ R + + + + ++ + + Sbjct: 13 DYLHSE--RNYSVNTSTAYENDLLDFRRFLNEQAITTYQQVTFLDVRIYLTELKQKSFSR 70 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG- 189 ++ + ++S+R + + +R+ + NP V K + + + E+M+ E Sbjct: 71 TTVARKISSLRSFYTFLLRENVINENPFTYVSHAKNQLRLPKFFYSEEMEALFQVVYEDN 130 Query: 190 ----SQPRLAFEFLLYSGLRCSDSCRAG-VQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 + R+ E L +G+R S+ + + K V Sbjct: 131 ETLTLRDRVLLEVLYGTGIRVSECAGILLPDLDTSYQAILIRGKGNKERYVPFGVYAEDA 190 Query: 245 LAMTPIGKETFFIN-----------NDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRK 291 + + + + + +KA + H +R Sbjct: 191 ITDYLPERANLMSHYKKSHDALLVNHYGDPLTTRGIRYCLSKIISKASLTRKIHPHMLRH 250 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKG 325 AT + GA + G ++ + YT Sbjct: 251 TFATDLLNNGADMRTVQELLGHASLSSTQIYTHV 284 >gi|16082303|ref|NP_394769.1| site-specific integrase/recombinase XerD related protein [Thermoplasma acidophilum DSM 1728] gi|10640657|emb|CAC12435.1| site-specific integrase/recombinase XerD related protein [Thermoplasma acidophilum] Length = 283 Score = 122 bits (306), Expect = 7e-26, Method: Composition-based stats. Identities = 39/270 (14%), Positives = 96/270 (35%), Gaps = 22/270 (8%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKH 128 +S + + + + + DQ + +IT I +++ Sbjct: 7 EYLSRFVEYMTGERKSRYTIKEYRFLVDQFLSFMNKKP-DEITPMDIERYKNFLAVKKRY 65 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + +S + ++++ +K + + + P PKR + ++++ ++ S Sbjct: 66 SKTSQYLAIKAVKLFYKALDLRVPINLTP------PKRPSHMPVYLSEDEAKRLIEAASS 119 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLA 246 ++ L Y+G+R + C + + Q +I ++++ K V + + +K L Sbjct: 120 DTRMYAIVSVLAYTGVRVGELCNLKISDVDLQESIINVRSGKGDKDRIVIMAEECVKALG 179 Query: 247 MTPIGKETFFINNDKQKMNATQFSI-------WFKAKATKAGV--NKSAHGVRKFSATIS 297 + + +ND ++ + + KAG+ + H +R AT Sbjct: 180 SYLDLRLSMDTDNDYLFVSNRRVRFDTSTIERMIRDLGKKAGIQKKVTPHVLRHTFATSV 239 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGAD 327 G + G +V + YT D Sbjct: 240 LRNGGDIRFIQQILGHASVATTQIYTHLND 269 >gi|284035039|ref|YP_003384969.1| integrase family protein [Spirosoma linguale DSM 74] gi|283814332|gb|ADB36170.1| integrase family protein [Spirosoma linguale DSM 74] Length = 298 Score = 122 bits (306), Expect = 7e-26, Method: Composition-based stats. Identities = 45/290 (15%), Positives = 99/290 (34%), Gaps = 29/290 (10%) Query: 76 SEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-GDFDYRKITT---KHIRSGVESRKHTP 130 ++ + L+ ++ ++ + +Q + + + +H+RS + S + Sbjct: 5 QDFLAHIRYEKRLSHHTLTAYANDLEQFCTFLLAECNIDQPERADFRHVRSWIVSLVESG 64 Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---- 183 SS + + ++R F + +R++ + +P ++ K + ++ M+ Sbjct: 65 MDKSSVNRKIATLRNFFGFLLRRKVIDFDPMSKIQALKASKRLPQYVEEKPMEMLLDDIE 124 Query: 184 -SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241 EG + +L E L +G+R S+ + +I K V L Sbjct: 125 FPDTFEGLRDKLVLELLYGTGIRLSELTGLKTTDVNLYEKTIVVLGKRNKHRIVPLNQPL 184 Query: 242 MKLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATK---AGVNKSAHG 288 +L+ + KE F K T G KS H Sbjct: 185 FELIQQYNLLKEKEFSGQADTAHLIVSDKGVAAYPVLIQRIVKRHLTLVTTLG-TKSPHV 243 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSR 337 +R AT + GA + + G ++ + YT D+++ + Sbjct: 244 LRHTFATHLLNRGADLNAIKDLLGHSSLAATQIYTHTSLDQLKKTYDQAH 293 >gi|258516772|ref|YP_003192994.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771] gi|257780477|gb|ACV64371.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771] Length = 389 Score = 122 bits (306), Expect = 7e-26, Method: Composition-based stats. Identities = 56/378 (14%), Positives = 115/378 (30%), Gaps = 56/378 (14%) Query: 18 HGKIIYYFRKGHG-----RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 GK + G +RI E+T L + + + T K Sbjct: 8 RGKNKWRLNVPDGTGPDGKRITHRKVVEATSEREAKKLLDVFSAEVQKGQYIAPSKLTFK 67 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH--- 128 ++ +S LA + ++ + +I+ G I HI + + Sbjct: 68 EFSQKWLESK--KDLAPKTLYRYKEILNSRILPAMGHLKIEDIKPFHIMQFYGNLQEPGI 125 Query: 129 ---------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 +P++ + + +F AV+ + + NP L VE PK K + +ED Sbjct: 126 REDGKEGTLSPATVLYHHRLLTNIFNAAVKWQIILTNPALRVEAPKAKKHKATSYEEEDT 185 Query: 180 QQFKSFWSEGS-QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-----------------NNI 221 S E + + L GLR + + + + Sbjct: 186 AALLSALEEQPLKFQAIVYIALGCGLRRGEIMGLEWKDIDLTKGTLEVRQSSQYLPGHGT 245 Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNAT 267 F+ + + + +P M LL + F D + M+ Sbjct: 246 FAKSPKNESSERIIAVPTETMSLLKQHRVQQNEQRLQVGGLWQASDRLFTTWDGKPMHPD 305 Query: 268 QFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325 + WF + HG+R +A+ AG + + G + + Y Sbjct: 306 SITKWFSGFLKNNNLSPLPFHGLRHTAASYMIKAGIPLKNIASRLGHSSPNTTLNIYAHS 365 Query: 326 ADRIRLGIKNSRRISSVV 343 + + + +++ ++ Sbjct: 366 F--KSVDAEAANKMNDIL 381 >gi|121634549|ref|YP_974794.1| putative integrase/recombinase [Neisseria meningitidis FAM18] gi|120866255|emb|CAM09996.1| putative integrase/recombinase [Neisseria meningitidis FAM18] gi|254671814|emb|CBA03927.1| site-specific recombinase [Neisseria meningitidis alpha275] gi|316983737|gb|EFV62718.1| tyrosine recombinase XerD [Neisseria meningitidis H44/76] gi|325197973|gb|ADY93429.1| tyrosine recombinase XerD [Neisseria meningitidis G2136] gi|325200561|gb|ADY96016.1| tyrosine recombinase XerD [Neisseria meningitidis H44/76] Length = 291 Score = 122 bits (306), Expect = 7e-26, Method: Composition-based stats. Identities = 43/273 (15%), Positives = 92/273 (33%), Gaps = 19/273 (6%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTP 130 LI ++ L N+ + ++I R+ + + + V Sbjct: 5 LIDRLLETLWLDRRLNQNTLNGYRRDLEKIARRLSQSGRMLKDADEADLAAAVYVDGEQR 64 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---- 186 SS + L++ + L+ W R+ NP ++ PK T++ + + + Sbjct: 65 SSQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLLAAPDTDT 124 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL 245 G + + E + +GLR S++ ++ + I K V + + Sbjct: 125 PHGLRDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITALGKGDKQRMVPMGQESAYWV 184 Query: 246 AMTPIG----------KETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294 + F++ K ++ + K A +AG+ + S H +R A Sbjct: 185 GRYYTEARPALLKGRSCDALFVSQKKTGISRQLAWMIVKEYAGRAGIGHISPHSLRHAFA 244 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGAD 327 T G + G ++ + YT A+ Sbjct: 245 THLVQHGLDLRVVQDMLGHADLNTTQIYTHVAN 277 >gi|86139170|ref|ZP_01057740.1| tyrosine recombinase [Roseobacter sp. MED193] gi|85824014|gb|EAQ44219.1| tyrosine recombinase [Roseobacter sp. MED193] Length = 312 Score = 122 bits (306), Expect = 7e-26, Method: Composition-based stats. Identities = 39/290 (13%), Positives = 90/290 (31%), Gaps = 29/290 (10%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSG 122 + + + + + N+ +++ + G +ITT +RS Sbjct: 15 RNALQLWLQGLRALDGASDNTINAYQGDISSFLAFMTQHSGAPQGLGALARITTSDMRSW 74 Query: 123 VESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE-- 177 + ++ + A + L++++ ++W +E + L+ PK + + RP ++ Sbjct: 75 MAQERNAGTGARSLARRLSAVKSFYRWLAEREGFELTAVLAARAPKFQKKLPRPLDEDAA 134 Query: 178 -----DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 ++ + ++ L GLR S++ + K G Sbjct: 135 RAVIETVELQSNTDWIAARDVAVVTLLYGCGLRISEALALTGKTAPLPSSLRILGKGGKE 194 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKM-------NATQFSIWFKAKATKAGVNK- 284 V + + +A + N Q + G+ Sbjct: 195 RLVPVIAAAREAVARYIALSPYPNEADGPLFRGARGGALNPRQIQGAMAQARAQLGLPAS 254 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 + H +R AT +AG + G ++ + YT D L Sbjct: 255 ATPHALRHSFATHLLEAGGDLRAIQELLGHASLSTTQAYT-AVDTAHLMA 303 >gi|225163580|ref|ZP_03725889.1| tyrosine recombinase XerD [Opitutaceae bacterium TAV2] gi|224801815|gb|EEG20102.1| tyrosine recombinase XerD [Opitutaceae bacterium TAV2] Length = 342 Score = 122 bits (306), Expect = 7e-26, Method: Composition-based stats. Identities = 50/340 (14%), Positives = 106/340 (31%), Gaps = 37/340 (10%) Query: 28 GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT-LKWLISEYRKSAHWGS 86 ++ S A+ + +T + P T ++ Sbjct: 2 PARKKKSPSANITSRATDAHAAGVTAGVNMTAELPPGLADPITDFCAVLEL------ERG 55 Query: 87 LAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVESRK---HTPSSAIQFLTS 139 + ++ ++ES Q D+R +T + + S ++ +S + L++ Sbjct: 56 RSDHTVEAYESDLTQCATFLQRQKKLADWRAVTGAAVTDWLYSLDGDDYSVASLARKLSA 115 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--------SEGSQ 191 +R+ + VR++ + ++ PK E++ + + + Sbjct: 116 LRMFARHLVREQTRPDDFTELLQGPKLVRRVPGTLNAEEVARLLAAPGGGGGGGGPHALR 175 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLLAMTPI 250 R E SGLR S+ +Q + ++ G V + + LA Sbjct: 176 DRAILELFYSSGLRVSELSGLLLQQVDLENGMLRVFGKGAKERVVPVGSKAREALATYLT 235 Query: 251 GKETFFINNDKQ-----------KMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297 F+ K ++ + K AG+ H +R AT Sbjct: 236 AARHHFVKEKKTGSQLFLSERGTAISRKMLWVLVKKYTKLAGITKPVKPHLLRHSFATHL 295 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 GA + G T+ + YT + RL +++R Sbjct: 296 LSGGADLRAIQEMLGHATIGTTQIYT-AVEERRLLDQHAR 334 >gi|50085725|ref|YP_047235.1| site-specific tyrosine recombinase [Acinetobacter sp. ADP1] gi|49531701|emb|CAG69413.1| site-specific tyrosine recombinase [Acinetobacter sp. ADP1] Length = 305 Score = 122 bits (306), Expect = 7e-26, Method: Composition-based stats. Identities = 39/279 (13%), Positives = 88/279 (31%), Gaps = 27/279 (9%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT------TKHIRSGVESR 126 L++ + K + + ++ +++ + +++ VE Sbjct: 6 QLLAMWLKERMIQNQSEHTLNAYQRDLTDFFDFCEKRKLELMQVEASDLREYLAYRVEQS 65 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + SS + L+S+R KWA + +++ +NP + ++ E + Q Sbjct: 66 NLSSSSIQRHLSSIRQFMKWAQQSQFLNMNPVEDFKLKRKSRPLPGMIDIETVHQILDQT 125 Query: 187 --------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT--QKTGTIITVE 236 + + E L SGLR ++ + L N ++ + T + Sbjct: 126 APEDELGTQLWLRDKAILELLYSSGLRLAELQGLKLIDLDFNRQLLRVTGKGNKTRVIPF 185 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKM---------NATQFSIWFKAKATKAGV--NKS 285 L+ + + + + Q K +A +AGV + Sbjct: 186 GKKAKQSLIDWLNVYRLWKGQFTQQDPLFVSQNGGALTPRQIENRVKHQALRAGVNVDLH 245 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R A+ A + G + + YT Sbjct: 246 PHLLRHCFASHMLSASGDLRSVQEMLGHSNLSTTQIYTH 284 >gi|187779614|ref|ZP_02996087.1| hypothetical protein CLOSPO_03210 [Clostridium sporogenes ATCC 15579] gi|187773239|gb|EDU37041.1| hypothetical protein CLOSPO_03210 [Clostridium sporogenes ATCC 15579] Length = 326 Score = 122 bits (306), Expect = 7e-26, Method: Composition-based stats. Identities = 51/299 (17%), Positives = 106/299 (35%), Gaps = 46/299 (15%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSGV------ 123 Y ++ + N+ S++ R G+ ++ I +I Sbjct: 23 YLRTI--KGKSENTIESYKLDLIMFFRFLKLYKGMVPGETEFNDIEISNISDEDIKNISL 80 Query: 124 -----------ESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGI 171 R + + + + ++R FK+ + + + NP L +E PK Sbjct: 81 TDLFAFVSFAENYRNNGSYAKARKVATLRSFFKFLQGKVKIIKENPALELESPKISKRNP 140 Query: 172 RPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229 T ++ ++ S + R L GLR S+ C + +++N++ + K Sbjct: 141 VYLTLDESKRLLSSIDGKFKERDLCIVTMFLNCGLRLSELCGINISNIKNDVLT-VIGKG 199 Query: 230 GTIITVELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATK 279 TV L +K L ++ F++ + ++N + K K Sbjct: 200 NKERTVYLNKACIKTLNDYLSVRKEMGEKIVDKDALFLSKNYTRINKRSVEMLVKKYVKK 259 Query: 280 AGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKG-ADRIRLGI 333 +G++ S H +R +AT+ G L G + + + YT +DR+R + Sbjct: 260 SGLDGEKYSPHKLRHTAATLMYKHGGVDIRSLQMILGHENISTTQIYTHVDSDRLREAV 318 >gi|227833388|ref|YP_002835095.1| integrase/recombinase [Corynebacterium aurimucosum ATCC 700975] gi|227454404|gb|ACP33157.1| integrase/recombinase [Corynebacterium aurimucosum ATCC 700975] Length = 303 Score = 122 bits (306), Expect = 7e-26, Method: Composition-based stats. Identities = 39/288 (13%), Positives = 90/288 (31%), Gaps = 17/288 (5%) Query: 59 EYINSPRKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITT- 116 E +S R L+ I ++ + + + + S + + +F + + Sbjct: 4 ESGSSERHVGGQLEEAIEDFAEYQRIVRGRSEATVRGYCSDLRLLAPEVPEFAAFTLNSL 63 Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + + + + S+ + ++R WA R+ Y+ + + PK + Sbjct: 64 REWLAHAVAEGKSRSTLARRTAAVRAFSTWAAREGYLESDVAQRLATPKVGKHLPTVMSP 123 Query: 177 E-----DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-G 230 + + EFL +G+R ++ V + + + + Sbjct: 124 TAAGELMGNAVSTDEVHFLRDSAMLEFLYATGVRVAELVGLDVGDIDLSRRTARVTGKGN 183 Query: 231 TIITVELPDGFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGV 282 V D L F+ +++A Q + A G Sbjct: 184 KQRVVPFGDAAHDALCAWLKTGRPELAGETEAVFVGTRGGRIDARQVRRVVERAAQVTGA 243 Query: 283 N-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + HG+R +AT + GA + G ++ + YT + + Sbjct: 244 PGLTPHGLRHSAATHLLEGGADLRIVQELLGHSSLQTTQVYTHVSAQR 291 >gi|222446012|ref|ZP_03608527.1| hypothetical protein METSMIALI_01661 [Methanobrevibacter smithii DSM 2375] gi|261349449|ref|ZP_05974866.1| integrase-recombinase protein [Methanobrevibacter smithii DSM 2374] gi|222435577|gb|EEE42742.1| hypothetical protein METSMIALI_01661 [Methanobrevibacter smithii DSM 2375] gi|288861812|gb|EFC94110.1| integrase-recombinase protein [Methanobrevibacter smithii DSM 2374] Length = 302 Score = 122 bits (306), Expect = 7e-26, Method: Composition-based stats. Identities = 32/277 (11%), Positives = 74/277 (26%), Gaps = 21/277 (7%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES----- 125 + Y S + + N+ ++ S + + K S Sbjct: 26 FNKIKESYITSLKNNNYSQNTIKTYSSIIHKFTTYLKNQ-IAIYNEKEFIKYFNSYILYL 84 Query: 126 RKHTPSSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRK------TEGIRPWTK 176 ++ S ++ ++ +I ++ P + + T Sbjct: 85 KQVKNVSQNYIYLVTVVVKKFLEFNNIHFLDSITTPKRIKSPPNFLTQKEVKQLLDSITW 144 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII--- 233 ++ + +L L SGLR S+ V ++ + Sbjct: 145 DENSDSDFRIITKLRDKLIVTLLYSSGLRVSELINLTVDNVNFEGKQLSIVGKNNSRVIL 204 Query: 234 -TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 K L +N + + K ++G+ K + H +R Sbjct: 205 LDESTKQLIQKYLEKRTQKSNYLVVNKSGNPLTPRYVQLMIKKYGNESGIEKKITPHILR 264 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 AT + G + G + + Y++ A+ Sbjct: 265 HSYATHLFEQGVNIKIIQQLLGHSNLSTTQIYSQDAN 301 >gi|254440057|ref|ZP_05053551.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 307] gi|198255503|gb|EDY79817.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 307] Length = 315 Score = 122 bits (306), Expect = 7e-26, Method: Composition-based stats. Identities = 43/286 (15%), Positives = 90/286 (31%), Gaps = 28/286 (9%) Query: 72 KWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS---GVESRK 127 I + ++ A N+++++ + + +T H+ ++ Sbjct: 9 AHWIQAFLEAQAAELDAATNTQLAYARDLIDFSERLKGIHFAAVTQDHVEKYLIWCDAHG 68 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185 S+ + L++++ LF++A + + NP + V P R + + +++ + Sbjct: 69 LAKSTRARRLSAIKQLFRFAFEEGWRVDNPAIQVSGPGRDKRLPKTLSHDEVDALLNAAR 128 Query: 186 --WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFM 242 E + E L +G+R ++ V + + + K V L Sbjct: 129 DAKKEPLRTTCLMELLYATGMRVTELVSLPVSAARGDPRMLLVRGKGDKERMVPLSPPAR 188 Query: 243 KLLAMTPIGKETFFINNDKQ----------------KMNATQFSIWFKAKATKAGVN--- 283 A+ ++ K + F K A GV Sbjct: 189 AATAIWLKTRDRTEDEAFKDGTPRSKFLFPSRGKLGHLTRQSFFNLIKDLALAGGVPPFK 248 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + H +R AT + GA + G V E YT D Sbjct: 249 ATPHTMRHAFATHLLEGGADLRSIQTLLGHADVATTEIYTHVLDER 294 >gi|115353184|ref|YP_775023.1| site-specific tyrosine recombinase XerC [Burkholderia ambifaria AMMD] gi|115283172|gb|ABI88689.1| tyrosine recombinase XerC [Burkholderia ambifaria AMMD] Length = 306 Score = 122 bits (306), Expect = 7e-26, Method: Composition-based stats. Identities = 42/288 (14%), Positives = 88/288 (30%), Gaps = 31/288 (10%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTP 130 I+ Y + L+ ++ ++ D++ + + +T +R + + + Sbjct: 6 IAAYLSNLKHVRQLSEHTLRAYSHELDELKKLAAGRPLDTLTAVDMRGAVARAHAGGLSA 65 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 S L++ R ++W + + NP +V PKR + + +D G+ Sbjct: 66 RSISHRLSAWRAFYRWLAQHIEMPANPVAAVRAPKRPKTLPKALSVDDASALMDAPLAGT 125 Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------GTIIT 234 + E SGLR ++ V++ Q + + Sbjct: 126 TEGIRDHAILELFYSSGLRLAELVGLDVRYTQADGYRSAGWLDLAEAEVTVRGKGNKERK 185 Query: 235 VELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--K 284 V + + L F++ +M K A AG+ Sbjct: 186 VPVGRKAIDALNAWLAVRGEFVKHDPHPLFVSVRGNRMAPGVVRERVKRAALAAGIPANV 245 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R AT + + G ++ + YT D L Sbjct: 246 HPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYT-SLDFQHLA 292 >gi|312170746|emb|CBX79008.1| Tyrosine recombinase xerC [Erwinia amylovora ATCC BAA-2158] Length = 302 Score = 122 bits (306), Expect = 7e-26, Method: Composition-based stats. Identities = 41/275 (14%), Positives = 88/275 (32%), Gaps = 22/275 (8%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIR---SGVESRKHTP 130 Y K L+ +++++ I + + ++ ++ +R + P Sbjct: 16 RYLK--VERQLSPLTQVNYRRQLSAIIVLLDELKVVEWARLDAALVRSLAARSTRSGLKP 73 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 +S L+++R W V Q + NP V P+ + +++ + Sbjct: 74 ASLALRLSALRSFLDWLVSQGAIKANPAKGVATPRAARHLPKNIDVDEVNRLLEIDLNDP 133 Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLA 246 + R E + +GLR S+ + HL + K + + + + Sbjct: 134 LAVRDRAMLEAMYGAGLRLSELVGIDLGHLDLASGEVWVIGKGSKERRLPMGRTAVHWVE 193 Query: 247 MTPIGKETFFIN-------NDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297 +E F N ++++ F K GV + H +R AT Sbjct: 194 NWLAMRELFEPQDNALFLSNQGKRISTRNVQKRFAEWGVKQGVSSHIHPHKLRHSFATHM 253 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 ++ + G + + YT D L Sbjct: 254 LESSGDLRAVQELLGHANLTTTQIYTH-LDFQHLA 287 >gi|319791651|ref|YP_004153291.1| integrase family protein [Variovorax paradoxus EPS] gi|315594114|gb|ADU35180.1| integrase family protein [Variovorax paradoxus EPS] Length = 317 Score = 122 bits (306), Expect = 8e-26, Method: Composition-based stats. Identities = 41/287 (14%), Positives = 84/287 (29%), Gaps = 28/287 (9%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHT 129 I++Y + LA + + + + + + ++ T HIR + Sbjct: 14 DWIAKYLEHVRVERRLAARTVELYAFHLQALRENAAEANLPLDRVQTAHIRRWMAKLHSA 73 Query: 130 ---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM------Q 180 P L+ R ++W + + NP V PK + +D Sbjct: 74 GREPRGIALVLSCWRSFYRWLGHEGLIGFNPVQDVHAPKAGRPLPKALGVDDAVQLAELH 133 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--------IKTQKTGTI 232 + ++ R E L GLR S+ Q + K Sbjct: 134 DEDADPWIEARDRAIVEILYGCGLRVSELTGLDAQASNTALGWVDLDAKEANVLGKGSKR 193 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQ-----KMNATQFSIWFKAKATKAGV--NKS 285 V + + L + + +M++ + ++ KAG+ Sbjct: 194 RIVPVGSKAAEALQEWLDVRGDRSVPALFVSSKGARMSSQAVWKLLRERSLKAGLAAPVH 253 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R A+ + + + G + + YT+ D L Sbjct: 254 PHMLRHSFASHVLQSSSDLRAVQELLGHANIATTQIYTR-LDFQHLA 299 >gi|126438545|ref|YP_001057962.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei 668] gi|126451016|ref|YP_001079697.1| site-specific tyrosine recombinase XerD [Burkholderia mallei NCTC 10247] gi|134279602|ref|ZP_01766314.1| tyrosine recombinase XerD [Burkholderia pseudomallei 305] gi|166998458|ref|ZP_02264318.1| tyrosine recombinase XerD [Burkholderia mallei PRL-20] gi|167814554|ref|ZP_02446234.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei 91] gi|167844587|ref|ZP_02470095.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei B7210] gi|167901578|ref|ZP_02488783.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei NCTC 13177] gi|217419758|ref|ZP_03451264.1| tyrosine recombinase XerD [Burkholderia pseudomallei 576] gi|254196593|ref|ZP_04903017.1| tyrosine recombinase XerD [Burkholderia pseudomallei S13] gi|254360098|ref|ZP_04976368.1| tyrosine recombinase XerD [Burkholderia mallei 2002721280] gi|52208916|emb|CAH34855.1| putative integrase/recombinase [Burkholderia pseudomallei K96243] gi|126218038|gb|ABN81544.1| tyrosine recombinase XerD [Burkholderia pseudomallei 668] gi|126243886|gb|ABO06979.1| tyrosine recombinase XerD [Burkholderia mallei NCTC 10247] gi|134248802|gb|EBA48884.1| tyrosine recombinase XerD [Burkholderia pseudomallei 305] gi|148029338|gb|EDK87243.1| tyrosine recombinase XerD [Burkholderia mallei 2002721280] gi|169653336|gb|EDS86029.1| tyrosine recombinase XerD [Burkholderia pseudomallei S13] gi|217397062|gb|EEC37078.1| tyrosine recombinase XerD [Burkholderia pseudomallei 576] gi|243065512|gb|EES47698.1| tyrosine recombinase XerD [Burkholderia mallei PRL-20] Length = 333 Score = 122 bits (306), Expect = 8e-26, Method: Composition-based stats. Identities = 47/322 (14%), Positives = 90/322 (27%), Gaps = 35/322 (10%) Query: 44 IPAYMSALTGSTPKREYINSPRKKPTTLKWLIS--EYRKSAHW-----------GSLAVN 90 A + + + L + + S L+ N Sbjct: 2 ARAVHACAADTAGGDAGRAPAPPADRPVDALAASPAWLDSRASIDLFCDAMWLEHGLSRN 61 Query: 91 SRISFESYFDQIIRKSGDFDYRKIT----TKHIRSGVESRKHTPSSAIQFLTSMRVLFKW 146 + ++ + + +S+ + L+ R + W Sbjct: 62 TLDAYRRDLQLFAQWLAARHAASVDHASEPTLTEYIAARSDGKATSSNRRLSVFRRYYGW 121 Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYS 202 AVR+ A++P L + K+ ++ ++ + + + R E + S Sbjct: 122 AVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALLAAPDVDTPLGLRDRTMLELMYAS 181 Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETF------ 255 GLR S+ + N ++ V + + Sbjct: 182 GLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVPFGEVAHGWIERYLRDARPALLGARA 241 Query: 256 ----FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMA 309 F+ M QF K A +A V + S H +R AT + GA + Sbjct: 242 ADALFVTARGDGMTRQQFWNIIKRHAQQADVRVHLSPHTLRHAFATHLLNHGADLRVVQL 301 Query: 310 TYGWKTVDQAETYTKGADRIRL 331 G + + YT A R RL Sbjct: 302 LLGHSDISTTQIYTHVA-RERL 322 >gi|313619210|gb|EFR90975.1| tyrosine recombinase XerC [Listeria innocua FSL S4-378] Length = 300 Score = 122 bits (306), Expect = 8e-26, Method: Composition-based stats. Identities = 37/280 (13%), Positives = 90/280 (32%), Gaps = 26/280 (9%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHIRSGVE 124 L + H + + ++ ++E+ R + + + + + ++ Sbjct: 5 GQLEKRFLDYLHSERNYSEHTSTAYENDLSDFRRFLNEQAIIEYQQVTFLDVRIYLTELK 64 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + + ++ + ++S+R + + +R+ + NP V K + + + E+M+ Sbjct: 65 QKSFSRTTVARKISSLRSFYTFLLRENVITENPFTYVSHAKNQLRLPKFFYSEEMEALFQ 124 Query: 185 FWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238 E + R+ E L +G+R S+ + L + +I K V Sbjct: 125 VVYEDNETLTLRDRVILEVLYGTGIRVSECAGIMLSDLDTSYQAILIRGKGNKERYVPFG 184 Query: 239 DGFMKLLAMT-----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285 + + IN+ + +KA + Sbjct: 185 AYAEDAITDYLSGRIELMTRFKKTHDALLINHYGDPLTTRGIRYCLTKIISKASLTRKIH 244 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 H +R AT + GA + G ++ + YT Sbjct: 245 PHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHV 284 >gi|291544229|emb|CBL17338.1| Integrase [Ruminococcus sp. 18P13] Length = 368 Score = 122 bits (306), Expect = 8e-26, Method: Composition-based stats. Identities = 46/344 (13%), Positives = 106/344 (30%), Gaps = 40/344 (11%) Query: 11 VTKERTRHGKIIYYFR--KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 V K+ ++ ++IY + +G ++ + A+ + + + Sbjct: 3 VYKDGSK-WRVIYRYTDSRGERKQTQKRGFSTKKEAQAW--------EREQMNKTESSLD 53 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR- 126 T + Y + L N+ + E ++I G I K + + Sbjct: 54 MTFESFSEIYFEDMK-KRLKDNTWHTKEHILRTKLIPFFGKRKMCDIQPKDVIAWQNEML 112 Query: 127 --------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKE 177 ++P + +F +AV+ + NP + WT+E Sbjct: 113 EGSTKTGKPYSPVYLKTLHNQLSAVFNYAVKFYGLPSNPAAKAGNMGKAKNREMLFWTQE 172 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----- 232 + +QF + AFE L + G+R + ++ K+ Sbjct: 173 EYKQFAEVMMDKPVSFYAFEMLYWCGIREGELLALTPADFDFEKQTVSITKSYQRIKGQD 232 Query: 233 -----------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 V++PD + + ++ + + A ++G Sbjct: 233 IITDPKTAKSNRVVKMPDFLSQEIQDFISQLYGIGEHDRMFMITKSYLHHEMDRGAKESG 292 Query: 282 VNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 V + H +R ++ + G +A + G +++D Y Sbjct: 293 VKRIRIHDLRHSHISLLIEMGFSAVAIADRVGHESIDITYRYAH 336 >gi|269467899|gb|EEZ79638.1| site-specific recombinase XerC [uncultured SUP05 cluster bacterium] Length = 292 Score = 122 bits (306), Expect = 8e-26, Method: Composition-based stats. Identities = 38/267 (14%), Positives = 98/267 (36%), Gaps = 17/267 (6%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSGVESRKH-- 128 I+ + A+N++ ++ +++ + + ++++++ V + +H Sbjct: 5 INRFILYLKVERGYALNTQQAYARDLQKLLAFTQTQSVERWASLSSENLNLFVMTMRHQN 64 Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS--- 184 + + + L+S+R + V Q + +N ++ PK + E + Q + Sbjct: 65 ISGRTIRRHLSSIRGFLSYLVNQGLLEVNCAQGLQSPKVAKSLPKTLDYERLVQMLTPKS 124 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL-----PD 239 + E L GLR S+ ++ + + ++ G+ + Sbjct: 125 SAFSELRDAAMVEVLYSCGLRVSELVGLDIEDVDASQGFLRVMGKGSKVRYTPLGESAQK 184 Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297 + L T + F+NN +++++ K +A G+ H +R +AT Sbjct: 185 SINRYLQKTSHTNKALFVNNRQERISTRTVQNIIKNRALSVGIKVNVHPHMLRHAAATHF 244 Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324 + + G K++ + YT Sbjct: 245 LQSSHDLRSVQEFLGHKSIKSTQVYTH 271 >gi|254472511|ref|ZP_05085911.1| phage integrase [Pseudovibrio sp. JE062] gi|211958794|gb|EEA93994.1| phage integrase [Pseudovibrio sp. JE062] Length = 365 Score = 122 bits (306), Expect = 8e-26, Method: Composition-based stats. Identities = 49/345 (14%), Positives = 94/345 (27%), Gaps = 33/345 (9%) Query: 34 RLPYPHESTFIPAYMSALTGSTP---KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVN 90 R P + A + G R+K T+ L Y + + Sbjct: 21 RHGSPWTTEEARAEAKRVLGDVAHGGDPMAARQARRKDLTVAELCDLYLEEGTATK-KAS 79 Query: 91 SRI-SFESYFDQIIRKSGDFDYRKITTKHIRS----------------GVESRKHTPSSA 133 + I GD I H+R+ V + +A Sbjct: 80 TIATDKGRIERHIKPVIGDLLVSDIKANHVRTLLKKVAEGNLPREGVGPVADKLGGKGTA 139 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-----SFWSE 188 + + + +F +A Y NP V+R + E + F+ Sbjct: 140 SRTVGLLGGIFSFANELGYRTDNPVHGVKRFPDQKNQRYLTQSELTRLFELLEEIEADGA 199 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248 + + L +G R + + + ++ + + T + L Sbjct: 200 NPKAVKIIKLLALTGARRGEIEQLKWSEVFLEQGTLHFEDSKTGQKSIPISAAVIGLLRE 259 Query: 249 PIGKETFFINNDKQKMNATQFS----IWFKAKATKAGVNK-SAHGVRKFSATISADAGAT 303 + F ++ TK G K H +R A+++ GA+ Sbjct: 260 AEQERCIDSPYVFPSERGDGFYVGATKVWRDLRTKFGDEKLRMHDLRHSFASLAVAGGAS 319 Query: 304 AHELMATYGWKTVDQAETYTK-GADRIRLGIKNS-RRISSVVDSD 346 + A G K + Y AD +R ++ D + Sbjct: 320 LPMIGALLGHKDTATTQRYAHLSADPLRSISDQVGAKLLGTDDGN 364 >gi|325129523|gb|EGC52350.1| tyrosine recombinase XerC [Neisseria meningitidis OX99.30304] gi|325135646|gb|EGC58263.1| tyrosine recombinase XerC [Neisseria meningitidis M0579] Length = 305 Score = 122 bits (306), Expect = 8e-26, Method: Composition-based stats. Identities = 39/293 (13%), Positives = 88/293 (30%), Gaps = 30/293 (10%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGV 123 Y ++ + ++ ++ +++ + ++ + + + Sbjct: 6 FAAHFDAYLENIVREGKSEHTVAAYRRDLEELFALLAQMPSEDAGGVPQDLSRRDFTAAL 65 Query: 124 ESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + + L+S R W V + + +P ++ PK+ + +E + Sbjct: 66 RRLSQRGLNARTLARKLSSWRQYCVWLVERGLLHTDPTADIKPPKQPERVPKALPQEWLN 125 Query: 181 QFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIIT 234 + +G + FE + SGLR S+ + + + T K Sbjct: 126 RMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQ 185 Query: 235 VELPDGFMKLLAMTPIGKETFFIN---NDKQKMNATQFSIWFKAKATKA-----GVNKSA 286 V L ++ L ++T + K A A G + S Sbjct: 186 VSLTGKSVEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHVSP 245 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 H +R A A + G ++ + YTK L + R+ Sbjct: 246 HMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK------LDFDHIARL 292 >gi|219683210|ref|YP_002469593.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis subsp. lactis AD011] gi|219620860|gb|ACL29017.1| probable integrase [Bifidobacterium animalis subsp. lactis AD011] Length = 344 Score = 122 bits (306), Expect = 8e-26, Method: Composition-based stats. Identities = 44/302 (14%), Positives = 95/302 (31%), Gaps = 43/302 (14%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGVESRKHT 129 L+ + + L+ ++ +++ Q + G + +T +R + HT Sbjct: 39 LMERFIEYLRSNRGLSEHTCMAYRGDILQCLEALDAFGRGNPDDVTLDDLRMWMGRMAHT 98 Query: 130 --PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED--------- 178 +S + ++R F WA +A NP ++ PK ++ Sbjct: 99 VGKTSLARKTIAVRSFFTWAYEHGMLAHNPAHALRTPKIDRNLPAVLNEDQAERLMDTVD 158 Query: 179 -----------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT- 226 + ++ + E L +G+R + + + +++ Sbjct: 159 AEAGEKNAGKSKDDALNAHAKALRDCAMLELLYATGMRVGELVGLDMGSFDWSNRTVRVL 218 Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK----------QKMNATQFSIWFKAK 276 K + + + G F N + +++ + Sbjct: 219 GKGNKTRVIPFGAPAQQAVEHWLHGGRPVFANGNSGNAVFIGVRGCRIDQRVVRQVVHEQ 278 Query: 277 ATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-----DRIR 330 A +AGV S H +R +AT D GA E+ G ++ + Y + DR R Sbjct: 279 AEQAGVPDISPHALRHSAATHMLDGGADLREVQEMLGHSSLQTTQRYAHVSIEQLKDRYR 338 Query: 331 LG 332 Sbjct: 339 QA 340 >gi|254203866|ref|ZP_04910226.1| tyrosine recombinase XerD [Burkholderia mallei FMH] gi|147745378|gb|EDK52458.1| tyrosine recombinase XerD [Burkholderia mallei FMH] Length = 333 Score = 122 bits (306), Expect = 8e-26, Method: Composition-based stats. Identities = 47/322 (14%), Positives = 90/322 (27%), Gaps = 35/322 (10%) Query: 44 IPAYMSALTGSTPKREYINSPRKKPTTLKWLIS--EYRKSAHW-----------GSLAVN 90 A + + + L + + S L+ N Sbjct: 2 ARAVHACAADTAGGDAGRAPAPPADRLVDALAASPAWLDSRASIDLFCDAMWLEHGLSRN 61 Query: 91 SRISFESYFDQIIRKSGDFDYRKIT----TKHIRSGVESRKHTPSSAIQFLTSMRVLFKW 146 + ++ + + +S+ + L+ R + W Sbjct: 62 TLDAYRRDLQLFAQWLAARHAASVDHASEPTLTEYIAARSDGKATSSNRRLSVFRRYYGW 121 Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYS 202 AVR+ A++P L + K+ ++ ++ + + + R E + S Sbjct: 122 AVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALLAAPDVDTPLGLRDRTMLELMYAS 181 Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETF------ 255 GLR S+ + N ++ V + + Sbjct: 182 GLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVPFGEVAHGWIERYLRDARPALLGARA 241 Query: 256 ----FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMA 309 F+ M QF K A +A V + S H +R AT + GA + Sbjct: 242 ADALFVTARGDGMTRQQFWNIIKRHAQQADVRVHLSPHTLRHAFATHLLNHGADLRVVQL 301 Query: 310 TYGWKTVDQAETYTKGADRIRL 331 G + + YT A R RL Sbjct: 302 LLGHSDISTTQIYTHVA-RERL 322 >gi|116872710|ref|YP_849491.1| integrase/recombinase XerC [Listeria welshimeri serovar 6b str. SLCC5334] gi|123463735|sp|A0AI80|XERC_LISW6 RecName: Full=Tyrosine recombinase xerC gi|116741588|emb|CAK20712.1| integrase/recombinase XerC [Listeria welshimeri serovar 6b str. SLCC5334] Length = 300 Score = 122 bits (306), Expect = 8e-26, Method: Composition-based stats. Identities = 39/273 (14%), Positives = 92/273 (33%), Gaps = 27/273 (9%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHIRSGVESRKHTPS 131 Y S + +VN+ ++E+ R + + + + + ++ + + + Sbjct: 14 YLHSE--RNYSVNTSTAYENDILDFRRFLNEQAISEYQQVTFLDVRIYLTELKQKSFSRT 71 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-- 189 + + ++S+R + + +R+ ++ NP V K + + + E+M+ E Sbjct: 72 TVARKISSLRSFYTFLLRENVISENPFTYVSHAKNQLRLPKFFYSEEMEALFQVVYEDNE 131 Query: 190 ---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKLL 245 + R+ E L +G+R S+ + L + +I K V + Sbjct: 132 TLTLRDRVLLEVLYGTGIRVSECAGILLSDLDTSYQAILIRGKGNKERYVPFGAYAEDAI 191 Query: 246 AMT-----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKF 292 ++ IN+ + +KA + H +R Sbjct: 192 TDYLSSRTELMIRFKKEHDSLLINHYGDPLTTRGIRYCLTKIISKASLTRKIHPHMLRHT 251 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKG 325 AT + GA + G ++ + YT Sbjct: 252 FATDLLNNGADMRTVQELLGHASLSSTQIYTHV 284 >gi|78189085|ref|YP_379423.1| tyrosine recombinase XerD [Chlorobium chlorochromatii CaD3] gi|78171284|gb|ABB28380.1| Tyrosine recombinase XerD [Chlorobium chlorochromatii CaD3] Length = 304 Score = 122 bits (306), Expect = 8e-26, Method: Composition-based stats. Identities = 41/265 (15%), Positives = 95/265 (35%), Gaps = 25/265 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHTP---SSAIQFLTS 139 + + N+R S+ + + + + +IT+K I + +S + +++ Sbjct: 23 RNFSANTRSSYHNDLHRYLLFVQEQATPIAEITSKVIDRFLAELVALGLETTSMARNIST 82 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED-------MQQFKSFWSEGSQP 192 +R K+ + + NP + PK+ + + + + Sbjct: 83 IRSFHKFLHNERLSSNNPAERLHLPKKAHYLPAVLNLSETLALLEAPSIMQPAPTYALRD 142 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-----------ITVELPDGF 241 R E L +G+R ++ +HL ++ I+ G+ + V+ Sbjct: 143 RAMLELLYATGVRATELISIQQEHLYSDAGFIRIFGKGSKERLVPIGASATLWVQRYQKE 202 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISAD 299 +++ + + F+N+ K++ K + AG+ KS H +R AT + Sbjct: 203 LRVQLVKAHSNDFLFLNSRGGKLSRMSLFEMVKTYSVVAGITKSISPHTLRHTFATHLIE 262 Query: 300 AGATAHELMATYGWKTVDQAETYTK 324 GA + G ++ + YT Sbjct: 263 GGADLRAVQEMLGHSSIVTTQIYTH 287 >gi|326316149|ref|YP_004233821.1| tyrosine recombinase XerD [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372985|gb|ADX45254.1| tyrosine recombinase XerD [Acidovorax avenae subsp. avenae ATCC 19860] Length = 303 Score = 122 bits (306), Expect = 8e-26, Method: Composition-based stats. Identities = 44/296 (14%), Positives = 94/296 (31%), Gaps = 30/296 (10%) Query: 66 KKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD------YRKITTKH 118 T + I + + L+ N+ ++ + G H Sbjct: 6 ASQTAIDAFIDALWLED----GLSRNTLAAYRRDLALYAQWLGQHAPDTAGALDATAEHH 61 Query: 119 IRSGVESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 +++ +R +SA + LT +R F+WA+R+ + +P + ++ ++ + + Sbjct: 62 LKAYFSARHAETRATSANRRLTVLRRYFQWALRERRIGADPTVRLQAARQPLRVPKTLSA 121 Query: 177 EDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 ++ G + R E + SGLR ++ H + ++ G+ Sbjct: 122 AQVEALLQAPDTSTPLGLRDRAMLELMYASGLRVTELVTLKTYHASLSEGVLRVMGKGSK 181 Query: 233 -----------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 ++ + + + F+ M F + K A AG Sbjct: 182 ERLVPFGEVAAQWMQRYLNEARADILAGQQTDDLFVTRRGAGMTRAMFWVVVKKHAQAAG 241 Query: 282 V--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 + S H +R AT + GA + G + YT A + Sbjct: 242 ITVPLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTTIYTHVARERLKALHA 297 >gi|330878502|gb|EGH12651.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 290 Score = 122 bits (306), Expect = 8e-26, Method: Composition-based stats. Identities = 36/285 (12%), Positives = 84/285 (29%), Gaps = 23/285 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR------SGVESRKHTPSSAIQFLT 138 ++ ++ ++ +++ I+ + + + S + L+ Sbjct: 7 RQVSPHTLEAYRRDLSKVLTFCQKAQLSSWNDLDIQHLRSFTARQHQQGQSSRSLARMLS 66 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194 ++R +K+ R+ +P + PK + + + Q E + + Sbjct: 67 AVRGFYKYLNREGLCQHDPANGLSPPKGERRLPKTLDTDRTAQLLDGGVEDDFLAHRDQA 126 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLAMT----- 248 E L SGLR S+ + L K + + + L Sbjct: 127 IMELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVGSKARQALETWLPLRA 186 Query: 249 --PIGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSATISADAGATAH 305 + F++ +++ + K + G N H +R A+ ++ Sbjct: 187 LTNPQDDAVFVSQQGKRLGPRAVQLRIKTAGERELGQNLHPHMLRHSFASHLLESSQDLR 246 Query: 306 ELMATYGWKTVDQAETYTKGADRIRLG---IKNSRRISSVVDSDD 347 + G + + YT D L R +DD Sbjct: 247 AVQELLGHADIKTTQIYTH-LDFQHLATVYDSAHPRAKRKGAADD 290 >gi|258622064|ref|ZP_05717091.1| phage integrase family protein [Vibrio mimicus VM573] gi|258585678|gb|EEW10400.1| phage integrase family protein [Vibrio mimicus VM573] Length = 402 Score = 122 bits (306), Expect = 8e-26, Method: Composition-based stats. Identities = 56/351 (15%), Positives = 111/351 (31%), Gaps = 28/351 (7%) Query: 10 FVTKERTRHGKIIYYFRK---GHGRRIRLPYPHESTFIPAYMSALTGSTPK-----REYI 61 + R G+ + FR G + I+L A A + I Sbjct: 43 GLKMIVNRQGRKRFLFRYTLHGTKKSIQLGEYPALDINTARQIANDHKREIALGNDPKAI 102 Query: 62 NSPRKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHI 119 ++ T + Y A L + S K G I + I Sbjct: 103 RDEKRNVLTFQEFSELHYLPYAMMNKL---TAKSDAGSLKLHFYSKWGKKPLTDIGQQDI 159 Query: 120 RSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 + ++ P++ + + + +F+ A+ YV NP + + K R ++ Sbjct: 160 QKLLDGLLEGRKPATVNRLRSLVLRMFRLAMEWGYVDSNPGQYIRKLKENNVRQRFLSRA 219 Query: 178 DMQQFKSFWSEGSQ--PRLAFEFLLYSGLRCSDSCRAGVQHLQ-----NNIFSIKTQKTG 230 ++ F +E A +F L +G+R + + + L N + K+G Sbjct: 220 EVSSFIKACNEEPNRTQSNALKFALLTGMRIGEITSSKWECLTVDDDGNWSLFLPHTKSG 279 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI---WFKAKATKAGV--NKS 285 TV L +++ ++ + F AG+ N Sbjct: 280 LSRTVLLNHLAKEVINDQRRFQQLKNPYIFAGDAPGRPIAHPKKAFARIKKAAGITDNFR 339 Query: 286 AHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 H +R A+I ++G AT +++ G ++ + Y A + Sbjct: 340 IHDLRHSFASILINSGNATLYDVQHLLGHQSPQTSTRYAHLASSRLREVSA 390 >gi|308235900|ref|ZP_07666637.1| tyrosine recombinase XerD [Gardnerella vaginalis ATCC 14018] gi|311115004|ref|YP_003986225.1| integrase/recombinase [Gardnerella vaginalis ATCC 14019] gi|310946498|gb|ADP39202.1| integrase/recombinase [Gardnerella vaginalis ATCC 14019] Length = 335 Score = 122 bits (306), Expect = 8e-26, Method: Composition-based stats. Identities = 42/307 (13%), Positives = 89/307 (28%), Gaps = 55/307 (17%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVESRKH- 128 I ++ L+ + S+ES + + D +IT I V + Sbjct: 13 IQQFLNHISVERGLSPKTVESYESDLTKYTNWLREARKINDVNEITQLDIEEYVRAMSSQ 72 Query: 129 -------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 P + + + S+ K+ + +A +P V+ PK+ + ++++ Sbjct: 73 AMSSQNLGPRTIARRIASIHEWNKFMLSNAQIASDPSAEVKAPKQAEHLPDVLSISEVER 132 Query: 182 FKSF-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTII 233 + + R EFL +G R S++ + + ++ + K Sbjct: 133 VIDAAGGFGSTDAVSLRDRALVEFLYATGARVSEAVGLKFEDIDLTESVVRLSGKGQKQR 192 Query: 234 TVELPDGFMKLLAMT--------------------------------PIGKETFFINNDK 261 V + ++ L F+N Sbjct: 193 LVPIGKCAVRALRDYLANARPILASRAQKSPATAKSRLKSPLNSSSKSANTHVIFLNKRG 252 Query: 262 QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 + ++ A + K H +R AT GA + G +V Sbjct: 253 KSLSRQSAWEAISRAGKMAKIGKELHPHTLRHSFATHLISGGADVRTVQELLGHASVTTT 312 Query: 320 ETYTKGA 326 + YT + Sbjct: 313 QIYTHIS 319 >gi|162210085|ref|YP_332479.2| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei 1710b] Length = 305 Score = 122 bits (306), Expect = 8e-26, Method: Composition-based stats. Identities = 44/275 (16%), Positives = 84/275 (30%), Gaps = 26/275 (9%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT----TKHIRSGVESRKHTPSSA 133 + + L+ N+ ++ + + +S+ Sbjct: 25 WLEH----GLSRNTLDAYRRDLQLFAQWLAARHVASVDHASEPTLTEYIAARSDGKATSS 80 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--- 190 + L+ R + WAVR+ A++P L + K+ ++ ++ + + Sbjct: 81 NRRLSVFRRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALLAAPDVDTPLG 140 Query: 191 -QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT 248 + R E + SGLR S+ + N ++ V + + Sbjct: 141 LRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVPFGEVAHGWIERY 200 Query: 249 PIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296 F+ M QF K A +A V + S H +R AT Sbjct: 201 LRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRVHLSPHTLRHAFATH 260 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 + GA + G + + YT A R RL Sbjct: 261 LLNHGADLRVVQLLLGHSDISTTQIYTHVA-RERL 294 >gi|315618491|gb|EFU99077.1| tyrosine recombinase XerC [Escherichia coli 3431] Length = 282 Score = 122 bits (306), Expect = 8e-26, Method: Composition-based stats. Identities = 41/267 (15%), Positives = 87/267 (32%), Gaps = 20/267 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SRKHTPSSAIQFLT 138 L+ + ++++ + II + + + + + +S L+ Sbjct: 3 RQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKGLGAASLALRLS 62 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRLA 195 ++R F W V Q + NP V PK + +DM + + R Sbjct: 63 ALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDINDPLAVRDRAM 122 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254 E + +GLR S+ ++HL + K + + + + ++ Sbjct: 123 LEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVAWIEHWLDLRDL 182 Query: 255 FFINND-------KQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305 F +D ++++A F K G+ + H +R AT ++ Sbjct: 183 FGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLR 242 Query: 306 ELMATYGWKTVDQAETYTKGADRIRLG 332 + G + + YT D L Sbjct: 243 GVQELLGHANLSTTQIYTH-LDFQHLA 268 >gi|307264510|ref|ZP_07546095.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|306870207|gb|EFN01966.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 336 Score = 122 bits (306), Expect = 8e-26, Method: Composition-based stats. Identities = 40/292 (13%), Positives = 92/292 (31%), Gaps = 24/292 (8%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI------TTKHIRSGVESRKHTP 130 +Y + + ++ +++ + T + I + + Sbjct: 47 DYLRIEKQA--SQHTLSNYQRQLLAVSDMLSQAGISTWQEVNSATVRWIIAQSNKQGLGA 104 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWS 187 S L ++R F + +RQE +++NP + ++ PK + E + Q + Sbjct: 105 KSIALRLVALRQWFSYLIRQEKMSVNPAVGIKAPKASKRLPKNIDAEQIGQLLTSDSHEP 164 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA 246 + E + SGLR S+ + + ++ K V + ++ L Sbjct: 165 SDLRDLAMMELMYSSGLRLSELQGLDLGDMDLAGREVRLLGKGNKERIVPIGSKALEALN 224 Query: 247 MTPIGKETFFINNDKQ-------KMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297 + F ++ +++ + + K G+ + H +R AT Sbjct: 225 RWLAVRNQFKPQDNAVFLNKRGGRLSHRSIQLVMQKWGEKQGLESHLHPHKLRHSFATHM 284 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLG--IKNSRRISSVVDSDD 347 +A + G + + YT D L + + DD Sbjct: 285 LEASGDLRAVQELLGHSNLATTQIYTH-LDFQHLAKIYDAAHPRAKRKKQDD 335 >gi|121728305|ref|ZP_01681336.1| tyrosine recombinase XerC [Vibrio cholerae V52] gi|153214849|ref|ZP_01949657.1| tyrosine recombinase XerC [Vibrio cholerae 1587] gi|153826279|ref|ZP_01978946.1| tyrosine recombinase XerC [Vibrio cholerae MZO-2] gi|254226604|ref|ZP_04920185.1| tyrosine recombinase XerC [Vibrio cholerae V51] gi|254291937|ref|ZP_04962718.1| tyrosine recombinase XerC [Vibrio cholerae AM-19226] gi|297581831|ref|ZP_06943752.1| tyrosine recombinase XerC [Vibrio cholerae RC385] gi|121629435|gb|EAX61864.1| tyrosine recombinase XerC [Vibrio cholerae V52] gi|124115092|gb|EAY33912.1| tyrosine recombinase XerC [Vibrio cholerae 1587] gi|125620876|gb|EAZ49229.1| tyrosine recombinase XerC [Vibrio cholerae V51] gi|149739947|gb|EDM54126.1| tyrosine recombinase XerC [Vibrio cholerae MZO-2] gi|150422147|gb|EDN14113.1| tyrosine recombinase XerC [Vibrio cholerae AM-19226] gi|297533925|gb|EFH72765.1| tyrosine recombinase XerC [Vibrio cholerae RC385] Length = 311 Score = 122 bits (306), Expect = 8e-26, Method: Composition-based stats. Identities = 40/303 (13%), Positives = 100/303 (33%), Gaps = 24/303 (7%) Query: 68 PTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRS-- 121 P L + + H L++ ++ +++ + + + G + ++ + +R Sbjct: 10 PDALAQPLERFYAYLHTEKGLSLYTQRNYKQQLETMTQYLVQVGLTHWTQLDSAWVRQLV 69 Query: 122 -GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + + SS L+S+R + + + + NP V P+++ + ++M Sbjct: 70 MQGKRQGMKASSIATRLSSLRSFLDFLILRGELQANPAKGVSAPRKQRTLPKNLDVDEMA 129 Query: 181 QFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236 Q + + R E + +GLR ++ V+ + + I+ V Sbjct: 130 QLLEVTDDDPLSIRDRAIMELMYGAGLRLAELVSIDVKDVNLSEGEIRVIGKGNKERKVW 189 Query: 237 LPDGFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 + + + F++ +++ K V + S Sbjct: 190 FAGQAQEWVGKWLKLRSQLADSAETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISP 249 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG--IKNSRRISSVVD 344 H +R AT ++ + G + + + YT D L + + + Sbjct: 250 HKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTH-LDFQHLAQVYDQAHPRARKKN 308 Query: 345 SDD 347 DD Sbjct: 309 KDD 311 >gi|229520080|ref|ZP_04409508.1| tyrosine recombinase XerC [Vibrio cholerae TM 11079-80] gi|229342868|gb|EEO07858.1| tyrosine recombinase XerC [Vibrio cholerae TM 11079-80] Length = 311 Score = 122 bits (306), Expect = 8e-26, Method: Composition-based stats. Identities = 40/303 (13%), Positives = 100/303 (33%), Gaps = 24/303 (7%) Query: 68 PTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRS-- 121 P L + + H L++ ++ +++ + + + G + ++ + +R Sbjct: 10 PDALAQPLERFYAYLHTEKGLSLYTQRNYKQQLETMTQYLVQVGLTHWTQLDSAWVRQLV 69 Query: 122 -GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + + SS L+S+R + + + + NP V P+++ + ++M Sbjct: 70 MQGKRQGMKASSIATRLSSLRSFLDFLILRGELEANPAKGVSAPRKQRTLPKNLDVDEMA 129 Query: 181 QFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236 Q + + R E + +GLR ++ V+ + + I+ V Sbjct: 130 QLLEVTDDDPLSIRDRAIMELMYGAGLRLAELVSIDVKDVNLSEGEIRVIGKGNKERKVW 189 Query: 237 LPDGFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 + + + F++ +++ K V + S Sbjct: 190 FAGQAQEWVGKWLKLRSQLADSAETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISP 249 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG--IKNSRRISSVVD 344 H +R AT ++ + G + + + YT D L + + + Sbjct: 250 HKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTH-LDFQHLAQVYDQAHPRARKKN 308 Query: 345 SDD 347 DD Sbjct: 309 KDD 311 >gi|227513451|ref|ZP_03943500.1| site-specific recombinase XerD [Lactobacillus buchneri ATCC 11577] gi|227524593|ref|ZP_03954642.1| site-specific recombinase XerD [Lactobacillus hilgardii ATCC 8290] gi|227083324|gb|EEI18636.1| site-specific recombinase XerD [Lactobacillus buchneri ATCC 11577] gi|227088268|gb|EEI23580.1| site-specific recombinase XerD [Lactobacillus hilgardii ATCC 8290] Length = 331 Score = 122 bits (306), Expect = 8e-26, Method: Composition-based stats. Identities = 37/304 (12%), Positives = 96/304 (31%), Gaps = 31/304 (10%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--------FDYRKITTKHIRSGVE 124 +Y +S + ++ ++++ + ++ + + +G+ Sbjct: 29 DWFLKYLRSE--RHYSEDTVQAYQNDLTEFLKFLNETSKDHTSLIKIDSFDVESYLTGLY 86 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 +K+ +S Q ++++R + + ++ E + NP V + R + +MQ S Sbjct: 87 DKKYARNSIAQKVSALRSFYGFLIKNEVIKNNPFEYVHLKNQNRRLPRFFYPTEMQALFS 146 Query: 185 FWSEGSQPRL-----AFEFLLYSGLRCSDSCRAGVQHLQ------------NNIFSIKTQ 227 +G + E +G+R S+ ++ + + Sbjct: 147 AAKKGERKLAFRNSAILEVFYSTGIRVSEGVTIQLKDIDLENQLILVTGKGRKQRYVPFG 206 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETF-FINNDKQKMNATQFSIWFKAKATKAGV--NK 284 + + L K + F+N+ + + + ++ + N Sbjct: 207 EPAKRAVESYLKESREPLMTKYHQKHDYLFVNHFGKPLTSRGIEYILNGIIKQSSLTTNI 266 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 H +R AT + GA + G ++ + YT + L + Sbjct: 267 HPHMLRHTFATEMLNNGADMRSVQELLGHSSLSTTQIYTHVT-KSHLMNDYQKYFPRNNQ 325 Query: 345 SDDP 348 S P Sbjct: 326 SLKP 329 >gi|71734696|ref|YP_277090.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. phaseolicola 1448A] gi|123761139|sp|Q48C04|XERC_PSE14 RecName: Full=Tyrosine recombinase xerC gi|71555249|gb|AAZ34460.1| tyrosine recombinase XerC [Pseudomonas syringae pv. phaseolicola 1448A] Length = 299 Score = 122 bits (306), Expect = 8e-26, Method: Composition-based stats. Identities = 40/298 (13%), Positives = 91/298 (30%), Gaps = 28/298 (9%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRK--------SGDFDYRKITTKHIRSGVES 125 + Y ++ ++ ++ +++ D D + + + R Sbjct: 5 LDAYCMHLRSERQVSPHTLEAYRRDLSKVLAYCQKAQRSSWNDLDIQHLRSFTARQH--Q 62 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + + S + L+++R +K+ R+ +P + PK + + + Q Sbjct: 63 QGQSSRSLARMLSAVRGFYKYLNREGICQHDPANGLSPPKGERRLPKTLDTDRTAQLLDG 122 Query: 186 WSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDG 240 E + + E L SGLR S+ + L K + + Sbjct: 123 GVEDDFLAHRDQAILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVGSK 182 Query: 241 FMKLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKF 292 + L + + F++ +++ + KA + G N H +R Sbjct: 183 ARQALEIWLPLRALTNPQDDAVFVSQQGKRLGPRTIQVRLKAAGERELGQNLHPHMLRHS 242 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG---IKNSRRISSVVDSDD 347 A+ ++ + G + + YT D L R +DD Sbjct: 243 FASHLLESSQDLRAVQELLGHADIKTTQIYTH-LDFQHLATVYDSAHPRAKRKGAADD 299 >gi|325300266|ref|YP_004260183.1| integrase family protein [Bacteroides salanitronis DSM 18170] gi|324319819|gb|ADY37710.1| integrase family protein [Bacteroides salanitronis DSM 18170] Length = 368 Score = 122 bits (306), Expect = 8e-26, Method: Composition-based stats. Identities = 31/266 (11%), Positives = 83/266 (31%), Gaps = 15/266 (5%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPS 131 Y + + ++ ++ +YF + + ++ I + +K + S Sbjct: 94 EGYLELLEQKRYSPSTIKTYRAYFSDFVEYHKGRNIDRLKVADINRYILYLVNEKKISVS 153 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 + +++ + + + + R K +K ++++ + Sbjct: 154 QQNMRINAIKF---YYEQVKGGKRQYYGGITRAKEYKTVPEVLSKNEIKRILD-QLSNIK 209 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----ELPDGFMKLLA 246 + +GLR S+ + + + + S++ G +L + + Sbjct: 210 HHCMISLVYSAGLRRSELLNLTPKDINSEMMSVRIMGKGKKCRYSLLSPKLLEELRRYFR 269 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAH--GVRKFSATISADAGATA 304 K F + +A+ K A +AG+ H +R AT + G Sbjct: 270 EYRPKKWLFEGETPGEPYSASALVKVLKEAAQRAGIKHRVHVHMLRHSFATHLLEQGTDL 329 Query: 305 HELMATYGWKTVDQAETYTKGADRIR 330 H + G + Y ++ + Sbjct: 330 HTIQELLGHNDIKTTAIYLHTSNAHK 355 >gi|330964222|gb|EGH64482.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. actinidiae str. M302091] Length = 290 Score = 122 bits (306), Expect = 9e-26, Method: Composition-based stats. Identities = 36/285 (12%), Positives = 84/285 (29%), Gaps = 23/285 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR------SGVESRKHTPSSAIQFLT 138 ++ ++ ++ +++ I+ + + + S + L+ Sbjct: 7 RQVSPHTLEAYRRDLSKVLAYCQKAQLSSWNDLDIQHLRSFTARQHQQGQSSRSLARMLS 66 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194 ++R +K+ R+ +P + PK + + + Q E + + Sbjct: 67 AVRGFYKYLNREGLCQHDPANGLSPPKGERRLPKTLDTDRTAQLLDGGVEDDFLAHRDQA 126 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLAMT----- 248 E L SGLR S+ + L K + + + L Sbjct: 127 IMELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVGSKARQALETWLPLRA 186 Query: 249 --PIGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSATISADAGATAH 305 + F++ +++ + K + G N H +R A+ ++ Sbjct: 187 LTNPQDDAVFVSQQGKRLGPRAVQLRIKTAGERELGQNLHPHMLRHSFASHLLESSQDLR 246 Query: 306 ELMATYGWKTVDQAETYTKGADRIRLG---IKNSRRISSVVDSDD 347 + G + + YT D L R +DD Sbjct: 247 AVQELLGHADIKTTQIYTH-LDFQHLATVYDSAHPRAKRKGAADD 290 >gi|260912682|ref|ZP_05919168.1| tyrosine recombinase XerC [Pasteurella dagmatis ATCC 43325] gi|260633060|gb|EEX51225.1| tyrosine recombinase XerC [Pasteurella dagmatis ATCC 43325] Length = 296 Score = 122 bits (306), Expect = 9e-26, Method: Composition-based stats. Identities = 38/272 (13%), Positives = 93/272 (34%), Gaps = 21/272 (7%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHT 129 L+ +Y ++ ++ +++ ++I++ G ++++T +R + T Sbjct: 4 LLEKYWNYLRIERQVSPHTLSNYQRQLNRIVQILNENGMTSWQEVTPSVVRFILAESSKT 63 Query: 130 ----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 S L+++R + V+Q+ + +N + PK+ + E +Q+ S Sbjct: 64 DKLHEKSLALRLSALRRFLTYLVQQDELKVNAATGISAPKQGRHLPKNIDAEQVQKLLSN 123 Query: 186 W---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 + R E L SGLR S+ + + + ++ V Sbjct: 124 DSKEPIDIRDRAILELLYSSGLRLSELQGLNLNSINTRVREVRVIGKGNKERIVPFGRYA 183 Query: 242 MKLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKF 292 + + F++ ++ + K G+ + + H +R Sbjct: 184 SHAIQQWLKVRLLFNPKDDALFVSQLGNRLTHRTIQKRLEVWGIKQGLNSHLNPHKLRHS 243 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324 AT +A + + G + + YT Sbjct: 244 FATHMLEASSDLRAVQELLGHSNLSTTQIYTH 275 >gi|227823634|ref|YP_002827607.1| site-specific tyrosine recombinase XerC [Sinorhizobium fredii NGR234] gi|227342636|gb|ACP26854.1| tyrosine recombinase XerC [Sinorhizobium fredii NGR234] Length = 310 Score = 122 bits (306), Expect = 9e-26, Method: Composition-based stats. Identities = 44/283 (15%), Positives = 79/283 (27%), Gaps = 29/283 (10%) Query: 77 EYRKS-AHWGSLAVNSRISFESYFDQIIRKS-GDF-------DYRKITTKHIRSGVESRK 127 + S A L+ + ++E Q + G D R + +R + R+ Sbjct: 18 RWLASLAEERRLSEKTIEAYERDTRQFLTFLTGHLAGPPRLADIRTLRPADLRGFLAQRR 77 Query: 128 HTPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + A L +R ++ + +V PK+ +P T D + + Sbjct: 78 KAGAGARTLGRGLAGLRSFLRYLEKHGLANAAGAGAVRSPKQPKSLPKPLTDRDALEVVT 137 Query: 185 F-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237 ++ L GLR S++ T K G V L Sbjct: 138 ADAQLAEEPWIAARNAAVLTLLYGCGLRISEALDLTPDDFSGAASLRITGKGGKTRIVPL 197 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQ-------FSIWFKAKATKAGVN--KSAHG 288 +A + A + + G+ + H Sbjct: 198 IAAATGAVATYRKLCPYHIGPGEPIFRGARGAKLQPAIIQREMQKLRSALGLPDSATPHA 257 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +R AT G + G ++ + YT G D RL Sbjct: 258 LRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYT-GVDSARL 299 >gi|66043455|ref|YP_233296.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. syringae B728a] gi|75503929|sp|Q500B4|XERC_PSEU2 RecName: Full=Tyrosine recombinase xerC gi|63254162|gb|AAY35258.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas syringae pv. syringae B728a] Length = 299 Score = 122 bits (306), Expect = 9e-26, Method: Composition-based stats. Identities = 35/281 (12%), Positives = 85/281 (30%), Gaps = 21/281 (7%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR------SGVE 124 + Y ++ ++ ++ +++ + I+ + Sbjct: 2 DQHLDAYCMHLRSERQVSPHTLEAYRRDLGKVLAYCQKAQVSSWSDLDIQHLRSFTARQH 61 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + + S + L+++R +K+ R+ +P + PK + + + Q Sbjct: 62 QQGQSSRSLARMLSAVRGFYKYLNREGICQHDPANGLSPPKGERRLPKTLDTDRAAQLLD 121 Query: 185 FWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPD 239 E + + E L SGLR S+ + L K + + Sbjct: 122 GGVEDDFLAHRDQAILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVGS 181 Query: 240 GFMKLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRK 291 + L + + F++ +++ + KA + G N H +R Sbjct: 182 KARQALEVWLPLRALTNPQDDAVFVSQQGKRLGPRAIQVRLKAAGERELGQNLHPHMLRH 241 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 A+ ++ + G + + YT D L Sbjct: 242 SFASHLLESSQDLRAVQELLGHADIKTTQIYTH-LDFQHLA 281 >gi|126209269|ref|YP_001054494.1| site-specific tyrosine recombinase XerC [Actinobacillus pleuropneumoniae L20] gi|307248877|ref|ZP_07530889.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307253490|ref|ZP_07535361.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|126098061|gb|ABN74889.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|306854614|gb|EFM86805.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306859169|gb|EFM91211.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 336 Score = 122 bits (306), Expect = 9e-26, Method: Composition-based stats. Identities = 40/292 (13%), Positives = 92/292 (31%), Gaps = 24/292 (8%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI------TTKHIRSGVESRKHTP 130 +Y + + ++ +++ + T + I + + Sbjct: 47 DYLRIEKQA--SQHTLSNYQRQLLAVSDMLSQAGISTWQEVNSATVRWIIAQSNKQGLGA 104 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWS 187 S L ++R F + +RQE +++NP + ++ PK + E + Q + Sbjct: 105 KSIALRLVALRQWFSYLIRQEKMSVNPAVGIKAPKASKRLPKNIDAEQIGQLLTSDSHEP 164 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA 246 + E + SGLR S+ + + ++ K V + ++ L Sbjct: 165 SDLRDLAMMELMYSSGLRLSELQGLDLGDMDLAGREVRLLGKGNKERIVPIGSKALEALN 224 Query: 247 MTPIGKETFFINNDKQ-------KMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297 + F ++ +++ + + K G+ + H +R AT Sbjct: 225 RWLAVRNQFKPQDNAVFLNKRGGRLSHRSIQLVMQKWGEKQGLESHLHPHKLRHSFATHM 284 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLG--IKNSRRISSVVDSDD 347 +A + G + + YT D L + + DD Sbjct: 285 LEASGDLRAVQELLGHSNLATTQIYTH-LDFQHLAKIYDAAHPRAKRKKQDD 335 >gi|294500946|ref|YP_003564646.1| tyrosine recombinase XerC [Bacillus megaterium QM B1551] gi|294350883|gb|ADE71212.1| tyrosine recombinase XerC [Bacillus megaterium QM B1551] Length = 300 Score = 122 bits (306), Expect = 9e-26, Method: Composition-based stats. Identities = 39/289 (13%), Positives = 97/289 (33%), Gaps = 26/289 (8%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKI------TTKHIRSGV 123 +K +++ + + + + + +E + + + + + + + Sbjct: 4 VKDVLNSFLEYLQIEKNYSKYTVDCYEKDIGIFMSFMQEEQIQNLQSVTYADARLFLTRL 63 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----M 179 ++++ S + ++ +R +++ R+E V NP V PK++ R +E+ Sbjct: 64 YEKQYSKRSMSRKISCLRTFYRYLNREELVEDNPFALVTLPKKEERNPRFLYEEEIVKLF 123 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239 Q G + + E L +G+R S+ + + ++ ++ G Sbjct: 124 QMNDLTTPLGQRNQSLLELLYATGIRVSECASIKLSDIDFSLQTLLVYGKGKKQRYVPFG 183 Query: 240 GFMK-------------LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA--GVNK 284 + K LL P + F+N + + K ++ Sbjct: 184 CYAKGALRVYIDNGRKLLLKKAPSDTHSLFLNYKGTPLTDRGIRLVIDQLVKKTAENIHI 243 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 S H +R AT + GA + G + + + YT + Sbjct: 244 SPHVLRHTFATHMLNEGADLRTVQEMLGHEHLSTTQIYTHVTKDRLKAV 292 >gi|325123125|gb|ADY82648.1| site-specific tyrosine recombinase [Acinetobacter calcoaceticus PHEA-2] Length = 295 Score = 122 bits (306), Expect = 9e-26, Method: Composition-based stats. Identities = 45/274 (16%), Positives = 88/274 (32%), Gaps = 27/274 (9%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR----KHTPS 131 + K + + ++ ++E + D R I +R + R + + S Sbjct: 2 WLKERKIQNQSEHTITAYERDVKSFLEFCEHKQLDLRNIEASDLREYLAQRVEQDQLSSS 61 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-- 189 S + LTS+R KWA + +Y+ INP + ++ E + Q Sbjct: 62 SMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILDQPMPEKP 121 Query: 190 ------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 + + E L SGLR ++ V+ + N ++ V Sbjct: 122 VDQQLWLRDKAMLELLYSSGLRLAELQGLTVKDVDFNRQLVRITGKGNKTRIVPFGKKAK 181 Query: 243 KLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAGV--NKSAHGVR 290 + L + + + D+ Q K +A +AGV + H +R Sbjct: 182 ESLLNWLKVYKIWKGHFDQNDSVFISLRGGALTPRQIEKRVKLQAQRAGVNVDLHPHLLR 241 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324 A+ + + G + + YT Sbjct: 242 HCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTH 275 >gi|301382613|ref|ZP_07231031.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. tomato Max13] gi|302063357|ref|ZP_07254898.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. tomato K40] gi|302133632|ref|ZP_07259622.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. tomato NCPPB 1108] gi|331017919|gb|EGH97975.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 290 Score = 122 bits (306), Expect = 9e-26, Method: Composition-based stats. Identities = 36/285 (12%), Positives = 84/285 (29%), Gaps = 23/285 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR------SGVESRKHTPSSAIQFLT 138 ++ ++ ++ +++ I+ + + + S + L+ Sbjct: 7 RQVSPHTLEAYRRDLSKVLAYCQKARLSSWNDLDIQHLRSFTARQHQQGQSSRSLARMLS 66 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194 ++R +K+ R+ +P + PK + + + Q E + + Sbjct: 67 AVRGFYKYLNREGLCQHDPANGLSPPKGERRLPKTLDTDRTAQLLDGGVEDDFLAHRDQA 126 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLAMT----- 248 E L SGLR S+ + L K + + + L Sbjct: 127 IMELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVGSKARQALETWLPLRA 186 Query: 249 --PIGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSATISADAGATAH 305 + F++ +++ + K + G N H +R A+ ++ Sbjct: 187 LTNPQDDAVFVSQQGKRLGPRAVQLRIKTAGERELGQNLHPHMLRHSFASHLLESSQDLR 246 Query: 306 ELMATYGWKTVDQAETYTKGADRIRLG---IKNSRRISSVVDSDD 347 + G + + YT D L R +DD Sbjct: 247 AVQELLGHADIKTTQIYTH-LDFQHLATVYDSAHPRAKRKGAADD 290 >gi|237797828|ref|ZP_04586289.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. oryzae str. 1_6] gi|331020678|gb|EGI00735.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. oryzae str. 1_6] Length = 290 Score = 122 bits (305), Expect = 9e-26, Method: Composition-based stats. Identities = 37/285 (12%), Positives = 84/285 (29%), Gaps = 23/285 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR------SGVESRKHTPSSAIQFLT 138 ++ ++ ++ +++ I+ + + + S + L+ Sbjct: 7 RQVSPHTLEAYRRDLGKVLAYCQKAQLSSWNELDIQHLRSFTARQHQQGQSSRSLARMLS 66 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194 ++R +K+ R+ A +P + PK + + + Q E + Sbjct: 67 AVRGFYKYLNREAICAHDPANGLSPPKGERRLPKTLDTDRTAQLLDGGVEDDFLAHRDHA 126 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLAMT----- 248 E SGLR S+ + L + K + + + L Sbjct: 127 ILELFYSSGLRLSELTGLNLDQLDLSDGLIQVLGKGSKTRVLPVGSKARRALETWLPLRA 186 Query: 249 --PIGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSATISADAGATAH 305 + F+ +++ + KA + G N H +R A+ ++ Sbjct: 187 LANPQDDAVFVTRQGKRLGPRAVQVRLKAAGERELGQNLHPHMLRHSFASHLLESSQDLR 246 Query: 306 ELMATYGWKTVDQAETYTKGADRIRLG---IKNSRRISSVVDSDD 347 + G + + YT D L R +DD Sbjct: 247 AVQELLGHADIKTTQIYTH-LDFQHLATVYDNAHPRAKRKGSADD 290 >gi|163792312|ref|ZP_02186289.1| Integrase [alpha proteobacterium BAL199] gi|159182017|gb|EDP66526.1| Integrase [alpha proteobacterium BAL199] Length = 323 Score = 122 bits (305), Expect = 9e-26, Method: Composition-based stats. Identities = 42/310 (13%), Positives = 94/310 (30%), Gaps = 34/310 (10%) Query: 55 TPKREYINSPRKKPTT-----LKWLISEYRKSAHW-GSLAVNSRISFESYF----DQIIR 104 ++ P TT L I+++R+ ++ ++ ++ + + Sbjct: 1 MAAPARLSDPLDPATTPVDAGLAGAIADWREWLKSEKRVSPHTLAAYGRDLGGFVNFLAG 60 Query: 105 KSGDF----DYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINP 157 GD + R+ + R SS + L+++R F++ R+ + Sbjct: 61 HLGDTVNLSALGTLQPADFRAWLARRAGGGLEKSSTARALSTIRGFFRFLERRGLASNAA 120 Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFK-------SFWSEGSQPRLAFEFLLYSGLRCSDSC 210 V P+ + T ++ + ++ L GLR ++ Sbjct: 121 VGVVRGPRVPRSIPKALTVDEARDALESVGELTDEPWIAARDSAVLTLLYGCGLRVGEAL 180 Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK-------QK 263 + + + T K G V + + +A +D + Sbjct: 181 DLNRRVVPLSDTLTITGKGGKARMVPVLPVVRRAVADYLERCPYRLGPDDPLFVGVRGGR 240 Query: 264 MNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321 + A + + G+ + H +R AT G + G ++ + Sbjct: 241 LGARRVQQSIQTLRCWLGLPETATPHALRHSFATHLLAGGGDLRAIQELLGHASLSTTQR 300 Query: 322 YTKGADRIRL 331 YT D RL Sbjct: 301 YT-EVDAARL 309 >gi|148978334|ref|ZP_01814839.1| Hypothetical bacteriophage integrase [Vibrionales bacterium SWAT-3] gi|145962493|gb|EDK27771.1| Hypothetical bacteriophage integrase [Vibrionales bacterium SWAT-3] Length = 342 Score = 122 bits (305), Expect = 9e-26, Method: Composition-based stats. Identities = 50/341 (14%), Positives = 99/341 (29%), Gaps = 21/341 (6%) Query: 15 RTRHG-KIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + G K + R G+R R + + AY + + +E++ P K L Sbjct: 3 VKKDGEKWLVDLRPSGRSGKRFR-RKFDKKSEALAYEKHILSTHHNKEWLGLPDDKRL-L 60 Query: 72 KWLIS-EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 L+ + KS + ++ D + R+ G+ KI + + +R Sbjct: 61 SELVEIWWIKSGQLK----RTASNYRKKLDLVCRELGNPPVNKINNAMVSNWQLNRMSKG 116 Query: 131 SSAIQFL---TSMRVLFKWAVRQEYVAINP-CLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 SA + + +F + +++P + T + S Sbjct: 117 QSANTVRRLTSCLSNVFTVLIETGDFNAPHPLKDLKQPAPNRSEMTYLTTYQIDALLSAV 176 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246 + + L +G R ++ +L KTG TV + + K L Sbjct: 177 QSHPELSKIVDICLSTGSRWRETVTLKPMNLSPYRIRFTNTKTGKPRTVPISEELYKKLQ 236 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHE 306 G + + + H +R A+ G Sbjct: 237 TNVSGNLFSYDPQKELYEIMDSLEFNLPK-------GQKVHVLRHTFASHFIMNGGNILT 289 Query: 307 LMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347 L G ++ Q Y A + +S + D + Sbjct: 290 LKEILGHASITQTMAYAHLAPDHLIDAVKLNPLSRLRDPQN 330 >gi|121595275|ref|YP_987171.1| phage integrase family protein [Acidovorax sp. JS42] gi|120607355|gb|ABM43095.1| phage integrase family protein [Acidovorax sp. JS42] Length = 444 Score = 122 bits (305), Expect = 9e-26, Method: Composition-based stats. Identities = 51/356 (14%), Positives = 111/356 (31%), Gaps = 25/356 (7%) Query: 9 PFVTKERTRHGKII----YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE----- 59 P + T G+ I Y G R+ R+ E T A A R+ Sbjct: 29 PGFLCKVTASGRKIFMLHYRTNSGERRKPRIGRFGELTVEQARSIAQDWMADVRKGSDPS 88 Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKH 118 ++ T+K L +++ + ++ +++ + ++ I+ K G ++T Sbjct: 89 AAKQAARQAPTVKELCTQFIEEYSKTRNKPSTVATYQDHINRYIVPKLGKIKVPELTRVD 148 Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + S+A + L +R +F A Y PK + G + ++ Sbjct: 149 VAEVMRDMAKISSTANRTLACLRKMFNMAEVWGYRPDGSNPCRHVPKYRENGETRYITDE 208 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-------- 230 + + + L +R A + ++ ++ + Sbjct: 209 ELARLYAYLDRADAEGLEHPTLTLAIRLQFEFSARMSEIRTLQWAWIDFENRRVAWPDSK 268 Query: 231 -----TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 ++ + I + + + + ++ +A V Sbjct: 269 TGGISKPMSEVAHQLLSNAERIEDSPYVCPSIYDGNLPLPSGTYYNSWRRILLRAKVPHV 328 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSRRI 339 HG+R +AT A++G MA KTV Y D +R + + Sbjct: 329 GTHGIRHRAATDIANSGVPLKVGMALTAHKTVSMFMRYVHAEDDPVRAAAEKVAAL 384 >gi|90422292|ref|YP_530662.1| phage integrase [Rhodopseudomonas palustris BisB18] gi|90104306|gb|ABD86343.1| phage integrase [Rhodopseudomonas palustris BisB18] Length = 304 Score = 122 bits (305), Expect = 9e-26, Method: Composition-based stats. Identities = 43/297 (14%), Positives = 107/297 (36%), Gaps = 28/297 (9%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVESR-- 126 L+ L + + + L+ N+ ++ G + +TT+H+R +ES Sbjct: 3 LRRLTASFLDTCAVERQLSANTLQAYGYDLADFCAWLKGQGEAPAVTTEHLRDYLESMMV 62 Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 K +PS+ + + +R F++ + + + R+ R ++E+ Q + Sbjct: 63 ARKLSPSTVRRRIACLRAFFRFLDDRGEMPDPFTGWRLKLPRRKRLPRALSREEANQLLT 122 Query: 185 FWSEGSQPR----------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-- 232 R + ++ +G+R + C+ + ++ S++ G+ Sbjct: 123 SARAPGAARQSLPASTPLCVEIRLMISTGIRVGELCKIATGDVSSDGASLRIHGKGSRDR 182 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT-------QFSIWFKAKATKAGVNK- 284 + L ++ + +N F + A +AG+ + Sbjct: 183 VVYVSNPALRNELRKLTTLRQRLSAGDGPLFVNRNGENLRPYSFRTKLRNFAGQAGLRRR 242 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI-RLGIKNSRRI 339 + H +R +AT+ ++G + G ++ E YT +D R ++ + + Sbjct: 243 VTPHMLRHTAATLLIESGVDIRIVQRLLGHSSIATTEIYTHVSDEALRKSLERANVL 299 >gi|242279145|ref|YP_002991274.1| integrase family protein [Desulfovibrio salexigens DSM 2638] gi|242122039|gb|ACS79735.1| integrase family protein [Desulfovibrio salexigens DSM 2638] Length = 307 Score = 122 bits (305), Expect = 9e-26, Method: Composition-based stats. Identities = 41/287 (14%), Positives = 92/287 (32%), Gaps = 33/287 (11%) Query: 85 GSLAVNSRISFESYFDQIIRK--SGDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTSM 140 SL+ + ++ Q + + I + IR+ + + H P + + L ++ Sbjct: 18 RSLSSLTLQAYRKDLSQFGETIDLNNVEVINIDKESIRTYLSNINHNYKPKTLKRKLATL 77 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTE---------------GIRPWTKEDMQQFKSF 185 + F + R++ + +P + +++ KE Sbjct: 78 KSFFNFLEREDLIPFSPFRKLHIKIDRSKELPKIIKETSLSRILKYAYLEKEKFDHKSKA 137 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--TGTIITVELPDGFMK 243 + E ++ E L +G+R S+ C + + + + +K Sbjct: 138 YREITRDICVIELLFATGIRVSELCSISPSEIDLKNKKLIINGKGNKQRLIPLCENNSLK 197 Query: 244 LLAMTPIGKETFFINNDKQ-------KMNATQFSIWFKAKATKAGVN--KSAHGVRKFSA 294 +L + + ++ ++ K + AGV + H R A Sbjct: 198 ILKEYSLLYQYALHDSTSFFLNRDLKPLSDQSVRRIIKKYSEIAGVTETITPHMFRHTIA 257 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK---GADRIRLGIKNSRR 338 T+ + G + G ++ E YT + R L K+ RR Sbjct: 258 TMLLENGVDIRNIQTLLGHSSLSVTEIYTHVSLSSQRDILAKKHPRR 304 >gi|254521772|ref|ZP_05133827.1| tyrosine recombinase XerC [Stenotrophomonas sp. SKA14] gi|219719363|gb|EED37888.1| tyrosine recombinase XerC [Stenotrophomonas sp. SKA14] Length = 296 Score = 122 bits (305), Expect = 9e-26, Method: Composition-based stats. Identities = 35/275 (12%), Positives = 84/275 (30%), Gaps = 17/275 (6%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTP 130 + + + ++ ++ ++ D + + + + +R V Sbjct: 3 AVQAFLQHLQVERRMSAHTLDAYRRDLDALSVWAEPRGMAVEALDAETLRQFVADEHRRG 62 Query: 131 SSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF---KS 184 SA + L++ R + W ++ + ++P +++ P+ + ++ Q + Sbjct: 63 LSAKSLQRRLSACRSFYAWLLKHGRIEVSPAATLKAPRAPRRLPQVLDADEAVQLVELEP 122 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMK 243 G + R E SGLR S+ C + L K V + Sbjct: 123 EGELGRRDRALLELFYSSGLRLSEVCALTWRDLDFASGLVNVMGKGNRQRRVPFGRPARE 182 Query: 244 LLAMTPIG----KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297 L + ++ I + A + G+ + H +R A+ Sbjct: 183 ALQAWRAESGGGPASPVFPGRNGPISQRAVQIRIRQLAQRQGLFKHVHPHMLRHSFASHI 242 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 ++ + G + + YT D L Sbjct: 243 LESSGDLRGVQELLGHADIATTQIYTH-LDFQHLA 276 >gi|291557209|emb|CBL34326.1| Site-specific recombinase XerD [Eubacterium siraeum V10Sc8a] Length = 301 Score = 122 bits (305), Expect = 9e-26, Method: Composition-based stats. Identities = 43/278 (15%), Positives = 85/278 (30%), Gaps = 28/278 (10%) Query: 75 ISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 I+EY + +L + ++ + Q S + I +I G R+ P +A Sbjct: 7 ITEYLRYCSEQRTLNSKTTKAYRTDLLQFAEFSSGMFSKDIIISYI--GCLHRQFKPKTA 64 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE--------------GIRPWTKEDM 179 + + S++ + + QE + NP ++ R+ + Sbjct: 65 RRKIASLKAFAHYLMIQEIINANPFDKIDTSFREPMVLPKVIPMNIISEILANAYDVFCQ 124 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--GTIITVEL 237 + E L +G R S+ C + +IK I Sbjct: 125 CNTDFSRRNAVRNIAVLEILFATGARVSEICTLTPDMVDLTNHTIKIFGKGSRERIIQIE 184 Query: 238 PDGFMKLLAMTPIGKE-------TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288 ++ L FF+N Q++ + +A G NK + H Sbjct: 185 NPDVLEALNRYYETFRSDILESGFFFVNKLHQRLTEQSVRVMISNQAAAIGYNKHITPHM 244 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 R AT+ + + G ++ + YT + Sbjct: 245 FRHSFATLLLEEDVDIRYIQKILGHSSIATTQIYTHVS 282 >gi|121634218|ref|YP_974463.1| putative integrase/recombinase [Neisseria meningitidis FAM18] gi|166918892|sp|A1KS31|XERC_NEIMF RecName: Full=Tyrosine recombinase xerC gi|120865924|emb|CAM09661.1| putative integrase/recombinase [Neisseria meningitidis FAM18] Length = 305 Score = 122 bits (305), Expect = 9e-26, Method: Composition-based stats. Identities = 39/293 (13%), Positives = 88/293 (30%), Gaps = 30/293 (10%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGV 123 Y ++ + ++ ++ +++ + ++ + + + Sbjct: 6 FAAHFDAYLENIVREGKSEHTVAAYRRDLEELFALLAQMPSEDVGGVPQDLSRRDFTAAL 65 Query: 124 ESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + + L+S R W V + + +P ++ PK+ + +E + Sbjct: 66 RRLSQRGLNARTLARKLSSWRQYCVWLVERGLLHTDPTADIKPPKQPERVPKALPQEWLN 125 Query: 181 QFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIIT 234 + +G + FE + SGLR S+ + + + T K Sbjct: 126 RMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQ 185 Query: 235 VELPDGFMKLLAMTPIGKETFFIN---NDKQKMNATQFSIWFKAKATKA-----GVNKSA 286 V L ++ L ++T + K A A G + S Sbjct: 186 VPLTGKSVEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHVSP 245 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 H +R A A + G ++ + YTK L + R+ Sbjct: 246 HMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK------LDFDHIARL 292 >gi|94969888|ref|YP_591936.1| tyrosine recombinase XerD subunit [Candidatus Koribacter versatilis Ellin345] gi|94551938|gb|ABF41862.1| tyrosine recombinase XerD subunit [Candidatus Koribacter versatilis Ellin345] Length = 313 Score = 122 bits (305), Expect = 9e-26, Method: Composition-based stats. Identities = 39/287 (13%), Positives = 93/287 (32%), Gaps = 28/287 (9%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESR-- 126 L+ ++ L+ S ++ Q + +R ++S Sbjct: 8 DRLLRDFLDYLRVEKGLSRLSVSAYSKDMQQFAEFLAKRKRSLDAAKRQDVRDFLDSLFS 67 Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS- 184 + + + L+S R +K+ + + +P L++E P++ + + +++ Q Sbjct: 68 NQLDGRTVARKLSSSRQFYKYLLLDRRIEHDPTLNIESPRQWKVLPKSLSADEVLQTLQG 127 Query: 185 ---------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIIT 234 + + R E LR S+ ++ + + + + K Sbjct: 128 PPRVLDTKESQALALRDRAMLEVFYAGALRVSEMIGVRMEDAKLDLGYMMVRGKGDKERI 187 Query: 235 VE----------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284 V + + F+ +K++ + A + +G + Sbjct: 188 VPLGQSALVAVKSYLESGREVLCAGKTSPILFVGKGCRKLSRQRVWQMVSAASQASGRHA 247 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330 S H +R AT + GA + G + + YT A DR++ Sbjct: 248 SPHMLRHSCATHMVENGADLRTVQTILGHADISTTQIYTHLALDRLK 294 >gi|304321470|ref|YP_003855113.1| putative integrase/recombinase DNA recombination protein [Parvularcula bermudensis HTCC2503] gi|303300372|gb|ADM09971.1| putative integrase/recombinase DNA recombination protein [Parvularcula bermudensis HTCC2503] Length = 323 Score = 122 bits (305), Expect = 9e-26, Method: Composition-based stats. Identities = 37/276 (13%), Positives = 86/276 (31%), Gaps = 26/276 (9%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTPS 131 + + + + ++ +++ + T + + ++ Sbjct: 12 LDLFLDMMAVERGASPRTLRNYGRDLERVSVFLFQRGTSLLRATAADLSAYIDHLHGQGR 71 Query: 132 SAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----- 183 SA L+++R + +A + NP V+RPK + + + ++ Sbjct: 72 SAATAALCLSALRQFYLFAYTEGMREDNPAELVDRPKARRPLPKILSIDEAASLLDLARD 131 Query: 184 ---SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD 239 + E L +GLR S+ C ++ + K V L D Sbjct: 132 EAACMKPGPLRLHALLEVLYATGLRVSELCSLPRGAVRAGEPWMTVLGKGQKERLVPLTD 191 Query: 240 GFMKLLAMTPIGKET--------FFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 G + ++ + F + + + K + +AG++ S H Sbjct: 192 GAVMAVSHYVAVQTDAERASAFLFPSRGKTGHITTARVAQLLKELSARAGIDPTRVSPHV 251 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R A+ + GA + G + + YT Sbjct: 252 LRHAFASHLLEGGADLRIVQQLLGHADISTTQIYTH 287 >gi|124383411|ref|YP_001028462.1| site-specific tyrosine recombinase XerD [Burkholderia mallei NCTC 10229] gi|254177062|ref|ZP_04883719.1| tyrosine recombinase XerD [Burkholderia mallei ATCC 10399] gi|254187507|ref|ZP_04894019.1| tyrosine recombinase XerD [Burkholderia pseudomallei Pasteur 52237] gi|124291431|gb|ABN00700.1| tyrosine recombinase XerD [Burkholderia mallei NCTC 10229] gi|157935187|gb|EDO90857.1| tyrosine recombinase XerD [Burkholderia pseudomallei Pasteur 52237] gi|160698103|gb|EDP88073.1| tyrosine recombinase XerD [Burkholderia mallei ATCC 10399] Length = 329 Score = 122 bits (305), Expect = 9e-26, Method: Composition-based stats. Identities = 44/275 (16%), Positives = 84/275 (30%), Gaps = 26/275 (9%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT----TKHIRSGVESRKHTPSSA 133 + + L+ N+ ++ + + +S+ Sbjct: 49 WLEH----GLSRNTLDAYRRDLQLFAQWLAARHAASVDHASEPTLTEYIAARSDGKATSS 104 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--- 190 + L+ R + WAVR+ A++P L + K+ ++ ++ + + Sbjct: 105 NRRLSVFRRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALLAAPDVDTPLG 164 Query: 191 -QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT 248 + R E + SGLR S+ + N ++ V + + Sbjct: 165 LRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVPFGEVAHGWIERY 224 Query: 249 PIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296 F+ M QF K A +A V + S H +R AT Sbjct: 225 LRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRVHLSPHTLRHAFATH 284 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 + GA + G + + YT A R RL Sbjct: 285 LLNHGADLRVVQLLLGHSDISTTQIYTHVA-RERL 318 >gi|288940629|ref|YP_003442869.1| integrase family protein [Allochromatium vinosum DSM 180] gi|288896001|gb|ADC61837.1| integrase family protein [Allochromatium vinosum DSM 180] Length = 361 Score = 122 bits (305), Expect = 9e-26, Method: Composition-based stats. Identities = 46/342 (13%), Positives = 98/342 (28%), Gaps = 24/342 (7%) Query: 11 VTKERTRHGKII-YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 +TK + G + R T + + + + Sbjct: 4 ITKLQRPSGTVYKARVRLIGQDGETSRTFKTRTAAERWARKFEAAALEDRAGLIMEGQKH 63 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129 TLK I YR +R ++ D + G +T I + + Sbjct: 64 TLKDAIKRYRTEI-LPDHTATTRPTYAQRLDYWCAELGHLRLSDVTPAKIAGCRDELLTS 122 Query: 130 --PSSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 P++ +L + + R +V +P V++P R +++++ + Sbjct: 123 KAPATVHGYLAVLASVLTTCVKRWHWVKESPMAHVDKPSVANGRTRFLSQDELSRLLEAC 182 Query: 187 S--EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------ITVELP 238 E LA + +G R + + + + + V + Sbjct: 183 RASESPDLYLAVVLAITTGARRGELLGLRWRDVDLVKDVLYLRVDNETTTKGGVRAVRIA 242 Query: 239 DGFMKLLAMTPIGKETFF----------INNDKQKMNATQFSIWFKAKATKAGVN-KSAH 287 +L G + F+ +AG+ H Sbjct: 243 SQVKPILEARQAGYRRGKVADITGAALVFPSRVSTRQPVDLRTPFRTALRRAGIEGFRWH 302 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R +A+ A GA+ E+ A G ++ + Y A++ Sbjct: 303 DLRHSAASFMAAHGASLVEIGAVLGHRSAQTTKRYAHLAEQA 344 >gi|108804429|ref|YP_644366.1| phage integrase [Rubrobacter xylanophilus DSM 9941] gi|108765672|gb|ABG04554.1| phage integrase [Rubrobacter xylanophilus DSM 9941] Length = 377 Score = 122 bits (305), Expect = 9e-26, Method: Composition-based stats. Identities = 54/357 (15%), Positives = 109/357 (30%), Gaps = 44/357 (12%) Query: 11 VTKERTRHGKIIYY---FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67 V K R + GK+I Y + G+R + ++ A+ + + Sbjct: 13 VYKRRNKDGKVIGYRGSYFAPDGKRRYVSGKTKTEAQRLLRQAMADADRGLVF----DAG 68 Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR 126 T+ + + + + ++ + +E I G +T H+R R Sbjct: 69 KLTVGEYLDRWLEDSVRDTVRQRTYERYEQISRVHIKPALGRIKLAALTPVHVRGLYRER 128 Query: 127 ---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + + T++ + AV + N +V+ P + IRP ++E ++F Sbjct: 129 LDAGLSSRTVRYIHTTLHKALEAAVVDGLIPRNVASTVKAPCPRGPDIRPLSQEQSRKFL 188 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------------NNIFSIKTQK 228 E + + L+ GLR + + + + K Sbjct: 189 EVARED-RFYALYVLALHCGLREGELLGLKWEDVDLEGGTLQVRRTLSETRTGHKFELPK 247 Query: 229 TGTIITVELPDGFMKLLAMTPIGKET---------------FFINNDKQKMNATQFSIWF 273 G +++L ++ L + F F Sbjct: 248 NGKGRSIKLSRRAVEALRSHRRRQNEERLRVGSLWQDNDLVFPTTTGTTMRATNLLGRHF 307 Query: 274 KAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADR 328 K KAG+ H +R ATI AG + G ++ + Y+ +R Sbjct: 308 KPLLEKAGLPAIRLHDLRHTCATILLVAGKHPKYVQELLGHASISITLDIYSHVIER 364 >gi|220921142|ref|YP_002496443.1| tyrosine recombinase XerD [Methylobacterium nodulans ORS 2060] gi|219945748|gb|ACL56140.1| tyrosine recombinase XerD [Methylobacterium nodulans ORS 2060] Length = 308 Score = 122 bits (305), Expect = 9e-26, Method: Composition-based stats. Identities = 49/284 (17%), Positives = 90/284 (31%), Gaps = 28/284 (9%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGV---ESRK 127 L+ Y + N+ ++ D + D + IR+ + ++R Sbjct: 11 LMQPYLDMLAAERGASANTLAAYRRDLDDYLAHLAAEGLDPAAVEAPMIRAYMADLDARG 70 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 SSA + L+ +R ++ + Y +P V PKR + + ++ + S Sbjct: 71 LKASSAARRLSCIRGFHRFLYAEGYAPTDPTAPVSGPKRGRALPKVLSVAEVDRLLSVAK 130 Query: 188 EG-------------SQPRLAFEFLLYSGLRCSDSCR-AGVQHLQNNIFSIKTQKTGTII 233 E + E L +GLR S+ L + + K G Sbjct: 131 EAVAQAPNLSEAARAQRLLCLLELLYATGLRVSELVALPRAAALTRERYLVVRGKGGRER 190 Query: 234 TVELPDGFMKLLAMTPIG-----KETFFINNDKQKMNATQFSIWFKAKATKAGVN---KS 285 V L + +A F +++ + F+ K A AG+ S Sbjct: 191 LVPLTEAARAAMAAHLTMLAAPGPWLFPADSESGHLTRQAFARDLKLAAAAAGIRADRVS 250 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 H +R A+ GA + G + + YT D Sbjct: 251 PHVLRHAFASHLLQNGADLRVVQELLGHADISTTQIYTHVLDER 294 >gi|238561655|ref|ZP_00441610.2| tyrosine recombinase XerD [Burkholderia mallei GB8 horse 4] gi|254208847|ref|ZP_04915195.1| tyrosine recombinase XerD [Burkholderia mallei JHU] gi|147750723|gb|EDK57792.1| tyrosine recombinase XerD [Burkholderia mallei JHU] gi|238524066|gb|EEP87501.1| tyrosine recombinase XerD [Burkholderia mallei GB8 horse 4] Length = 329 Score = 122 bits (305), Expect = 9e-26, Method: Composition-based stats. Identities = 44/275 (16%), Positives = 84/275 (30%), Gaps = 26/275 (9%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT----TKHIRSGVESRKHTPSSA 133 + + L+ N+ ++ + + +S+ Sbjct: 49 WLEH----GLSRNTLDAYRRDLQLFAQWLAARHAASVDHASEPTLTEYIAARSDGKATSS 104 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--- 190 + L+ R + WAVR+ A++P L + K+ ++ ++ + + Sbjct: 105 NRRLSVFRRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALLAAPDVDTPLG 164 Query: 191 -QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT 248 + R E + SGLR S+ + N ++ V + + Sbjct: 165 LRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVPFGEVAHGWIERY 224 Query: 249 PIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296 F+ M QF K A +A V + S H +R AT Sbjct: 225 LRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRVHLSPHTLRHAFATH 284 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 + GA + G + + YT A R RL Sbjct: 285 LLNHGADLRVVQLLLGHSDISTTQIYTHVA-RERL 318 >gi|330825567|ref|YP_004388870.1| integrase family protein [Alicycliphilus denitrificans K601] gi|329310939|gb|AEB85354.1| integrase family protein [Alicycliphilus denitrificans K601] Length = 401 Score = 122 bits (305), Expect = 9e-26, Method: Composition-based stats. Identities = 59/356 (16%), Positives = 107/356 (30%), Gaps = 25/356 (7%) Query: 7 LPPFVTKERTRHGKIIYYFRKGH----GRRIRLPYPHESTFIPAY-----MSALTGSTPK 57 L P + T G+ ++ + R+ L E T A A Sbjct: 27 LVPGFLCKITPTGRKVFMVQYRTNSGVRRKPALGQFGELTVEQARSLAQDWLAEVRRGGD 86 Query: 58 REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITT 116 + +K T K L + +++ ++ D I G ++T Sbjct: 87 PGLDKAEARKAPTAKELCGRFMDDHSKPHNKPSTQAGYQYQIDSFVIPAFGSKKVHEVTR 146 Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 I + ++ + +P+ A + L+ +R +F A Y PK +G Sbjct: 147 HDITALMKRMEKSPTQANRVLSLVRKMFNLAELWGYRPDGSNPCRHVPKYPEKGSTRLIT 206 Query: 177 EDMQQFKSFWS--------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228 ++ + E LA R S+ L + Sbjct: 207 DEQMVKLFAYLDKAEVDGLEHPIHLLAVRLQFEFAARMSEVLLLRWHWLDLPNGRVVWPD 266 Query: 229 TGTIITVELPDGFMKLL-----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 + T + + L I + K+ ++ + ++ +AGV Sbjct: 267 SKTGDMSKPLSAEARRLLESAPHYGDSPYVCPAILDHKRPLSPHSYYQAWRRILDRAGVP 326 Query: 284 K-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSR 337 K HG+R SAT A++G MA KTV Y D +R + Sbjct: 327 KVGTHGIRHRSATDIANSGVPLKVGMALTAHKTVAMFMRYVHTEDDPVRQAAELVA 382 >gi|182680028|ref|YP_001834174.1| integrase family protein [Beijerinckia indica subsp. indica ATCC 9039] gi|182635911|gb|ACB96685.1| integrase family protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 323 Score = 122 bits (305), Expect = 9e-26, Method: Composition-based stats. Identities = 36/293 (12%), Positives = 78/293 (26%), Gaps = 33/293 (11%) Query: 71 LKWLISEYRKSAH-WGSLAVNSRISFESYFDQII----RKSGDFD----YRKITTKHIRS 121 L L + ++ + ++ Q + G + ++T +R+ Sbjct: 20 LAGLAEAWLLHLSGERRVSALTAEAYARDLRQFLAFLAEHFGGAPSLETFAELTPADLRA 79 Query: 122 GVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + +R++ S + L +R ++ R+ +V PK +P Sbjct: 80 FMTARRNQDVGSRSLSRQLAGLRSFARFLEREGKGKALVFSAVRTPKLARHLPKPLNPTA 139 Query: 179 MQQFKSFWSEGSQPRLAFE---FLLYSGLRCSDSCR--------AGVQHLQNNIFSIKTQ 227 + + R A+ GL R + T Sbjct: 140 ACEVVDVANRTDTERPAWVLARDAAVLGLLYGAGLRISEALSLTRREAPIGETDALTVTG 199 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKA 280 K V + + + + ++ + + Sbjct: 200 KGRKTRMVPIIEPVRRGIESYLALCPYPLPPQGPLFVGAKGGPLSPRIIQLAVEQMRGAL 259 Query: 281 GVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 G+ K + H +R AT G + G ++ + YT D RL Sbjct: 260 GLPKSATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQLYT-AVDSERL 311 >gi|307823075|ref|ZP_07653305.1| tyrosine recombinase XerC [Methylobacter tundripaludum SV96] gi|307735850|gb|EFO06697.1| tyrosine recombinase XerC [Methylobacter tundripaludum SV96] Length = 302 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 33/280 (11%), Positives = 90/280 (32%), Gaps = 22/280 (7%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGVESRKHTP 130 L +++ + ++ +++ + R D + IR+ + SR Sbjct: 9 LADFFKQLTVEVRASEHTVKNYQRDLKHLSRYCTDKPITRWADLKHTDIRAHIASRHRKG 68 Query: 131 SSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S+ + L+++R + + +++ +NP ++ PK+ + + + + + Sbjct: 69 LSSKSLQRELSAIRSFYNYLLKKGQTDVNPAQHIQAPKQARKLPKTLDVDQLSGLLEAGA 128 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--IKTQKTGTIITVELPDGFM 242 + FE SGLR S+ + L + ++ K G + + + Sbjct: 129 SSLLEIRDLAMFELFYSSGLRLSELSALDLTDLDLPDSTLTVRIGKGGKSRVLPVGSKAV 188 Query: 243 KLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKF 292 + + + ++ + + G+ + H +R Sbjct: 189 TAIENWLQQRAVKIPAIEPALFVSTRGTRLGQRNIELRLERWCKAKGIAEHIHPHMLRHS 248 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 A+ ++ + G + + YT D L Sbjct: 249 FASHLLESSHDLRAVQELLGHSNISTTQIYTH-LDFQHLA 287 >gi|220935034|ref|YP_002513933.1| integrase family protein [Thioalkalivibrio sp. HL-EbGR7] gi|219996344|gb|ACL72946.1| integrase family protein [Thioalkalivibrio sp. HL-EbGR7] Length = 401 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 62/368 (16%), Positives = 113/368 (30%), Gaps = 26/368 (7%) Query: 7 LPPFVTKERTRHGKI----IYYFRKGHGRRIRLPYPHESTFIPAY-----MSALTGSTPK 57 L P + T G+ Y G R+ L E T A A Sbjct: 27 LVPGFLCKVTPTGRKVFMLQYRTNSGVRRKPSLGQFGELTVEQARSLAQDWLAEVRRGGD 86 Query: 58 REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITT 116 + +K T+K L + +++ ++ D I G ++T Sbjct: 87 PGLDKADARKAPTVKELCGRFMDDHSKPHNKPSTQAGYQYQIDTFVIPAFGTKKVHEVTR 146 Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 I + ++ + +P+ A + L+ +R +F A Y PK +G Sbjct: 147 NDITALMKRMEKSPTQANRVLSLVRKMFNLAELWGYRPDGSNPCRHVPKYPEKGSTRLIT 206 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-------------IFS 223 +D + + ++ +L +R A + + Sbjct: 207 DDQMVKLFAYLDKAEAENLEHPILLLAVRLQFEFAARMSEILLLQWDWLDLPNGRVVWPD 266 Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 KT ++ E I + +Q ++ + ++ + AGV Sbjct: 267 SKTGDMSKPLSEEAKRRLTSAPRYGDSPYVCPAIIDHRQPLSPHTYYQGWRRILSNAGVP 326 Query: 284 K-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSR-RIS 340 K HG+R SAT A++G MA KTV Y D +R + R Sbjct: 327 KVGTHGIRHRSATDIANSGVPVKVGMALTAHKTVAMFMRYVHTEDDPVRQAAELVATRRQ 386 Query: 341 SVVDSDDP 348 ++ P Sbjct: 387 TITGKRQP 394 >gi|291527468|emb|CBK93054.1| Site-specific recombinase XerD [Eubacterium rectale M104/1] Length = 308 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 41/284 (14%), Positives = 86/284 (30%), Gaps = 28/284 (9%) Query: 70 TLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK- 127 TL+ I Y + L + +++ Q + + ITT + S + + Sbjct: 3 TLETRIKNYIEYCTAQKRLDTKTLKAYKIDLRQFSEQISITEIEYITTSVLESYITNLHQ 62 Query: 128 -HTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWT---------- 175 ++P S + + S++ F + + + + + + Sbjct: 63 QYSPKSVKRKIASIKAFFHYLEYKDIIILNPFNKLQIKFREPVILPKTIPLKTLEVLFNA 122 Query: 176 ---KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA--GVQHLQNNIFSIKTQKTG 230 K + + E L +G+R S+ C LQNNI I + + Sbjct: 123 AYAKYHKTTSPCQKRKTLRDIAVLELLFATGIRISELCSILLQNMDLQNNIILIHGKGSK 182 Query: 231 TIITVELPDGFMKLLAMTPIGKE-------TFFINNDKQKMNATQFSIWFKAKATKAGVN 283 + + +L FF+NN +++ A ++ Sbjct: 183 ERLIHICDPNVLNILNQYYTEYYSQISACGYFFVNNTGNRLSDQSVRDMINKYCRIADID 242 Query: 284 K--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 + H R AT + + G +++ E YT Sbjct: 243 YHITPHMFRHTFATQLLEENVDIRYIQTMLGHSSINVTEIYTHV 286 >gi|229527130|ref|ZP_04416524.1| tyrosine recombinase XerC [Vibrio cholerae 12129(1)] gi|229335361|gb|EEO00844.1| tyrosine recombinase XerC [Vibrio cholerae 12129(1)] Length = 311 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 40/303 (13%), Positives = 100/303 (33%), Gaps = 24/303 (7%) Query: 68 PTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRS-- 121 P L + + H L++ ++ +++ + + + G + ++ + +R Sbjct: 10 PDALAQPLERFYAYLHTEKGLSLYTQRNYKQQLETMTQYLVQVGLTHWTQLDSAWVRQLV 69 Query: 122 -GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + + SS L+S+R + + + + NP V P+++ + ++M Sbjct: 70 MQGKRQGMKASSIATRLSSLRSFLDFLILRGELEANPAKGVSAPRKQRTLPKNLDVDEMA 129 Query: 181 QFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236 Q + + R E + +GLR ++ V+ + + I+ V Sbjct: 130 QLLEVTDDDPLSIRDRAIMELMYGAGLRLAELVSIDVKDVNLSEGEIRVIGKGNKERKVW 189 Query: 237 LPDGFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 + + + F++ +++ K V + S Sbjct: 190 FAGQAQEWVGKWLKLRSQLADSAETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISP 249 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG--IKNSRRISSVVD 344 H +R AT ++ + G + + + YT D L + + + Sbjct: 250 HKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTH-LDFQHLAQVYDQAHPRARKKN 308 Query: 345 SDD 347 DD Sbjct: 309 KDD 311 >gi|172062036|ref|YP_001809688.1| site-specific tyrosine recombinase XerC [Burkholderia ambifaria MC40-6] gi|171994553|gb|ACB65472.1| tyrosine recombinase XerC [Burkholderia ambifaria MC40-6] Length = 306 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 42/288 (14%), Positives = 88/288 (30%), Gaps = 31/288 (10%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTP 130 I+ Y + L+ ++ ++ D++ + + +T +R + + + Sbjct: 6 IAAYLSNLKHVRQLSEHTLRAYTHELDELKKLAAGRPLDTLTAVDMRGAVARAHAGGLSA 65 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 S L++ R ++W + + NP +V PKR + + +D G+ Sbjct: 66 RSISHRLSAWRAFYRWLAQHIEMPANPVAAVRAPKRPKTLPKALSVDDASALMDAPLAGT 125 Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------GTIIT 234 + E SGLR ++ V++ Q + + Sbjct: 126 TEGIRDHAILELFYSSGLRLAELVGLDVRYTQADGYRSAGWLDLAEAEVTVRGKGNKERK 185 Query: 235 VELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--K 284 V + + L F++ +M K A AG+ Sbjct: 186 VPVGRKAIDALNAWLAVRGEFVKHDPHPLFVSVRGNRMAPGVVRERVKRAALAAGIPANV 245 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R AT + + G ++ + YT D L Sbjct: 246 HPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYT-SLDFQHLA 292 >gi|153931223|ref|YP_001384765.1| phage integrase family site specific recombinase [Clostridium botulinum A str. ATCC 19397] gi|152927267|gb|ABS32767.1| site-specific recombinase, phage integrase family [Clostridium botulinum A str. ATCC 19397] Length = 281 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 44/265 (16%), Positives = 87/265 (32%), Gaps = 13/265 (4%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSS 132 I+ Y + L++ + ++++ I +R + R K SS Sbjct: 9 IAIYLAAKKLDGLSLKTLLNYKYNLAIFADYL-RKPLATINAMDLRIFLAQRCKKMKASS 67 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 ++ ++ F W +EY+ NP L +++ K+ R +E+++ + + Sbjct: 68 VNGQISILKSFFGWLHMEEYIPKNPSLKLKQTKQPKRVRRALNQEELELLRQACKTN-RE 126 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMTPIG 251 + EFL+ +G R S+ + N S K V LL Sbjct: 127 KALLEFLISTGCRLSEVVGIDKNDIDWNEMSLHVIGKGNKERKVYFDVKTKILLKKYLAI 186 Query: 252 KETFFI------NNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGAT 303 + ++ K A + G KS H R AT ++G Sbjct: 187 RNDITPALFVASKGTHARLGGRSIQREIKKIAKRVGTEKSIYPHLFRHSFATGKINSGMP 246 Query: 304 AHELMATYGWKTVDQAETYTKGADR 328 L G + + Y + ++ Sbjct: 247 LPVLQHIMGHENPATTQIYAELSEE 271 >gi|194364318|ref|YP_002026928.1| site-specific tyrosine recombinase XerD [Stenotrophomonas maltophilia R551-3] gi|194347122|gb|ACF50245.1| tyrosine recombinase XerD [Stenotrophomonas maltophilia R551-3] Length = 325 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 46/318 (14%), Positives = 96/318 (30%), Gaps = 39/318 (12%) Query: 53 GSTPKREYINSPRKKPTTLKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFD- 110 + + +L+ I + + LA + S+ + + R + + Sbjct: 8 AERRQLVQQLPELRADDSLR--IQRFLDAIWAENGLARATLDSYRRDLEGLARWTDGREG 65 Query: 111 -YRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 I + + R +P S + L+++R F VR+ + +P ++ PK Sbjct: 66 GLAGIERPGLFDYLAWRTRHGWSPRSNARLLSALRAFFADGVRRGDRSEDPSALLDPPKL 125 Query: 167 KTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222 + + + + G + R E + +GLR S+ + Sbjct: 126 PRLLPKALAESQIDALLAAPDIDSPLGLRDRAMLELMYAAGLRVSELVLLPATAVNLRQG 185 Query: 223 SIKTQKT-GTIITVELPDGFMKLLAMTPIGKETF-----------------FINNDKQKM 264 ++ V L + L FI + Sbjct: 186 VLRVTGKGSKERLVPLGEESQHWLERYLQQSRPQLVGKGKVQALADGQTPLFIEPTLHAL 245 Query: 265 NATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321 F K A AG++ S H +R AT + GA L G ++ + Sbjct: 246 TRQAFWHLVKRHAQVAGIDPARISPHALRHSFATHLLNRGADLRALQMLLGHSSLSTTQI 305 Query: 322 YTKGADRIRLGIKNSRRI 339 YT + ++ +++ Sbjct: 306 YT------LVAREHLQKL 317 >gi|315497300|ref|YP_004086104.1| integrase family protein [Asticcacaulis excentricus CB 48] gi|315415312|gb|ADU11953.1| integrase family protein [Asticcacaulis excentricus CB 48] Length = 304 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 38/300 (12%), Positives = 90/300 (30%), Gaps = 31/300 (10%) Query: 69 TTLKWLISEYRKSAHW-GSLAVNSRISFES----YFDQIIRKSGDF----DYRKITTKHI 119 T+ ++ + ++ + ++ Y + + G D +T+ I Sbjct: 1 MTIDDARLQWLQYLKAQKRVSPRTLEAYGHAFSLYIGHLRKALGADIDLNDLSHLTSADI 60 Query: 120 RSGVESRKH-----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 R + + + S Q L++++ + A + + P+ KT RP Sbjct: 61 RGWMAYLRGKDEPLSARSLAQHLSAIKSFHSYLDLHMGYANAQVVLTQGPRLKTSLPRPL 120 Query: 175 TKEDMQQFK--------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226 ++ Q E ++ R L GLR S++ + Sbjct: 121 NEDQAQGLLTEIELDGDKSEWEAARDRAVLLLLYGCGLRISEALSLTAKDTPLAETLRIV 180 Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATK 279 K V + + + + + F ++ + + ++ Sbjct: 181 GKGNKTRLVPVLEAVREAVDTYRRLQPFTLTEEDALFRAPRGGPLSPRHVQLSVQHLRSR 240 Query: 280 AGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 G+ + H +R AT +GA + G ++ + YT+ L + Sbjct: 241 LGLSDRATPHALRHSFATHLLGSGADLRSIQELLGHASLSTTQKYTQVDAERLLSAYAAA 300 >gi|148642488|ref|YP_001273001.1| phage integrase family integrase/recombinase [Methanobrevibacter smithii ATCC 35061] gi|148551505|gb|ABQ86633.1| integrase-recombinase protein, phage integrase family [Methanobrevibacter smithii ATCC 35061] Length = 302 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 32/277 (11%), Positives = 74/277 (26%), Gaps = 21/277 (7%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES----- 125 + Y S + + N+ ++ S + + K S Sbjct: 26 FNKIKESYITSLKNNNYSQNTIKTYSSIIHKFTTYLKNQ-IAIYNEKEFIKYFNSYILYL 84 Query: 126 RKHTPSSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRK------TEGIRPWTK 176 ++ S ++ ++ +I ++ P + + T Sbjct: 85 KQVKNVSQNYIYLVTVVVKKFLEFNNIHFLDSITTPKRIKSPPNFLTQKEVKQLLDSITW 144 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII--- 233 ++ + +L L SGLR S+ V ++ + Sbjct: 145 DENSDSDFRIITKLRDKLIVTLLYSSGLRVSELINLSVDNVNFEGKQLSIVGKNNSRVIL 204 Query: 234 -TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 K L +N + + K ++G+ K + H +R Sbjct: 205 LDESTKQLIQKYLEKRTQKSNYLVVNKSGNPLTPRYVQLMIKKYGNESGIEKKITPHILR 264 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 AT + G + G + + Y++ A+ Sbjct: 265 HSYATHLFEQGVNIKIIQQLLGHSNLSTTQIYSQDAN 301 >gi|124006330|ref|ZP_01691164.1| tyrosine recombinase XerD [Microscilla marina ATCC 23134] gi|123987987|gb|EAY27658.1| tyrosine recombinase XerD [Microscilla marina ATCC 23134] Length = 299 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 47/269 (17%), Positives = 97/269 (36%), Gaps = 26/269 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSG----DFDYRKITTKHIRS---GVESRKHTPSSAIQFL 137 SL+ NS ++ + ++ HI+ + SS + L Sbjct: 18 RSLSENSLEAYLHDIQKFSDYLEMAGLSILPAEVKADHIKKFLSYLAKLGIAASSQARIL 77 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPR 193 + ++ +K+ + +E + +P ++V P+ + + ++++ + EG++ R Sbjct: 78 SGIKAFYKYLMLEETIERDPSVNVHTPRIDRKIPDVLSLQEIEDLLAVIDLSTPEGARNR 137 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT---- 248 E L SGLR ++ + +L +I ++ V + + L Sbjct: 138 AMIEVLYSSGLRVTELIELKISNLYLDIGFLRIIGKANKERFVPIGREAARYLISYIENI 197 Query: 249 -------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 P ++ F+N K++ + K A A + K S H R AT Sbjct: 198 RSNVPVKPNNEDFVFLNRRGTKISRVMVFMIIKEVALLADIKKNISPHTFRHSFATHLIL 257 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADR 328 GA + G + + E Y K D+ Sbjct: 258 GGANIKAVQEMLGHENITTTEIY-KRLDQ 285 >gi|291166237|gb|EFE28283.1| integrase-recombinase [Filifactor alocis ATCC 35896] Length = 307 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 45/289 (15%), Positives = 99/289 (34%), Gaps = 29/289 (10%) Query: 71 LKWLISEYRKSAHWGS-LAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESR 126 L+ L+ EY K + L + S++ Q + K ++ ++I K+I ++ Sbjct: 3 LENLVDEYLKVCENQNNLNYKTVKSYKLDLKQYMVFLDKEENYYRKEILCKYIEMLH-TK 61 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE------RPKRKTEGIRPWTKEDMQ 180 + + + + +++ F + V ++ + NP + + KT I Sbjct: 62 DYRVKTIKRKIATLKAFFSYLVYEDILEYNPFVKIRLRLKEPVILPKTIPIVYLENLFKC 121 Query: 181 QFKSFWSEG---------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--T 229 + + S+ + E L+ +G+R S+ C + + + I+ Sbjct: 122 LYDERDNADKNTYKYKALSRDIIILEILISTGIRISELCDLRKEQISYSERMIRIYGKGD 181 Query: 230 GTIITVELPDGFMKLLAMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284 I + K + K FFIN K++ K KA + Sbjct: 182 KERILPVYNENLWKEIKQYEELFGLEIKGYFFINRINNKLSDQSVRNMIKKNCKKASIPI 241 Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 + H R AT+ + + + G ++ + YT ++ Sbjct: 242 NITPHMFRHTFATLLLENDVDSRNIQQILGHSSITTTQIYTNITSNKKI 290 >gi|218767552|ref|YP_002342064.1| putative integrase/recombinase [Neisseria meningitidis Z2491] gi|34223069|sp|Q9JW14|XERC_NEIMA RecName: Full=Tyrosine recombinase xerC gi|121051560|emb|CAM07858.1| putative integrase/recombinase [Neisseria meningitidis Z2491] gi|319409816|emb|CBY90124.1| tyrosine recombinase XerC [Neisseria meningitidis WUE 2594] Length = 305 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 40/293 (13%), Positives = 86/293 (29%), Gaps = 30/293 (10%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD----------YRKITTKHIR 120 Y ++ + ++ ++ +++ + Sbjct: 6 FAAHFDAYLENIVREGKSEHTVAAYRRDLEELFALLAQMPSEDAGGVPQGLSQRDFTAAL 65 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + R + + L+S R W V++ + +P ++ PK+ + +E + Sbjct: 66 RRLSQRGLNARTLARKLSSWRQYCAWLVKRGLLHTDPTADIKPPKQPERVPKALPQEWLN 125 Query: 181 QFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIIT 234 + +G + FE + SGLR S+ + + + T K Sbjct: 126 RMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQ 185 Query: 235 VELPDGFMKLLAMTPIGKETFFIN---NDKQKMNATQFSIWFKAKATKA-----GVNKSA 286 V L ++ L ++T + K A A G + S Sbjct: 186 VPLTGKSVEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHVSP 245 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 H +R A A + G ++ + YTK L + R+ Sbjct: 246 HMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK------LDFDHIARL 292 >gi|9635596|ref|NP_061531.1| integrase [Pseudomonas phage D3] gi|6166382|gb|AAF04808.1| integrase [Pseudomonas phage D3] gi|9885346|gb|AAG01406.1| integrase [Integration vector pVH-2] Length = 369 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 50/357 (14%), Positives = 104/357 (29%), Gaps = 28/357 (7%) Query: 16 TRHGKIIYY--FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 R+ ++ F+ G+ +R + + A + P T + Sbjct: 4 KRNDSAYWWISFKSATGKLVR-RSSGTADYSAAKALEQQERAKAWKEKEMGVNPPRTFEE 62 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130 +I Y + A + + + + + + IR R +P Sbjct: 63 VIIPYLQHARQHQRSYETTVHR---IKPLREYFAGRVVNDLGGQDIRGYGAHRLDAGASP 119 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WS 187 ++ + L ++ + A+ + + + R T+ +++ Sbjct: 120 ATINRELAALSAAINHCNTELEWALPNPVKGRKMREAEGRDRWLTRAEVEALCRAARGQK 179 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPDGFMK 243 G + +G R + + + I K G ++ + +G M Sbjct: 180 FGPMLEDFIRLAVNTGCRREEMLGLEWRRVDFANRLIYLEASHTKAGKRRSIPINEGAMA 239 Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIW-----FKAKATKAGV-NKSAHGVRKFSATIS 297 L + A + FK A + + + H +R A Sbjct: 240 ALKRRMAFRSETSPECPWVFARANGDRVISLSAGFKQACQAAKIADFTIHDLRHTCAAWL 299 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR-----RISSVVDSDDP 348 AG ++ G TV E Y A R+R + RIS V +D+P Sbjct: 300 VSAGVPLADVRDLLGHSTVAMTERYAHLAPARVRDAVGVLDQVREGRISRSVHADNP 356 >gi|167893119|ref|ZP_02480521.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei 7894] gi|167917844|ref|ZP_02504935.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei BCC215] gi|237811111|ref|YP_002895562.1| tyrosine recombinase XerD [Burkholderia pseudomallei MSHR346] gi|254296371|ref|ZP_04963828.1| tyrosine recombinase XerD [Burkholderia pseudomallei 406e] gi|157805883|gb|EDO83053.1| tyrosine recombinase XerD [Burkholderia pseudomallei 406e] gi|237504621|gb|ACQ96939.1| tyrosine recombinase XerD [Burkholderia pseudomallei MSHR346] Length = 333 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 47/322 (14%), Positives = 90/322 (27%), Gaps = 35/322 (10%) Query: 44 IPAYMSALTGSTPKREYINSPRKKPTTLKWLIS--EYRKSAHW-----------GSLAVN 90 A + + + L + + S L+ N Sbjct: 2 ARAVHACAADTAGGDAGRAPAPPADRPVDALAASPAWLDSRASIDLFCDAMWLEHGLSRN 61 Query: 91 SRISFESYFDQIIRKSGDFDYRKIT----TKHIRSGVESRKHTPSSAIQFLTSMRVLFKW 146 + ++ + + +S+ + L+ R + W Sbjct: 62 TLDAYRRDLQLFAQWLAARYAASVDHASEPTLTEYIAARSDGKATSSNRRLSVFRRYYGW 121 Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYS 202 AVR+ A++P L + K+ ++ ++ + + + R E + S Sbjct: 122 AVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALLAAPDVDTPLGLRDRTMLELMYAS 181 Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETF------ 255 GLR S+ + N ++ V + + Sbjct: 182 GLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVPFGEVAHGWIERYLRDARPALLGARA 241 Query: 256 ----FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMA 309 F+ M QF K A +A V + S H +R AT + GA + Sbjct: 242 ADALFVTARGDGMTRQQFWNIIKRHAQQADVRVHLSPHTLRHAFATHLLNHGADLRVVQL 301 Query: 310 TYGWKTVDQAETYTKGADRIRL 331 G + + YT A R RL Sbjct: 302 LLGHSDISTTQIYTHVA-RERL 322 >gi|329114345|ref|ZP_08243107.1| Tyrosine recombinase XerD [Acetobacter pomorum DM001] gi|326696421|gb|EGE48100.1| Tyrosine recombinase XerD [Acetobacter pomorum DM001] Length = 306 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 47/295 (15%), Positives = 104/295 (35%), Gaps = 28/295 (9%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHTP- 130 + + + + A N+ ++E+ + TT+ +++ + + + Sbjct: 6 VDLFLEMLAAERAAAPNTLAAYEADLTSCAESLAREGQTLQTATTEGLQNWMAALVGSGQ 65 Query: 131 --SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + + L+ +R + + +R+ A NP ++ PK +T R ++ ++ + +E Sbjct: 66 ARRTVARRLSCIRQFYLFLLREGMRADNPAAHLDSPKPRTPLPRFLSESEVLALLNACAE 125 Query: 189 -----------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVE 236 G + A E L SGLR S+ + + + + K G V Sbjct: 126 PDGASLPKKRRGILAKAALELLYASGLRISELLALPRKAIAGDQRMIMVRGKGGRERLVP 185 Query: 237 LPDGFMKL------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287 L D + + F + + M F A +A ++ S H Sbjct: 186 LSDSAREAAQALLEVDAHLESAFLFPGRDPAKPMTRQAFDRILHTVAIRAEIDPARLSPH 245 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKNSRRISS 341 +R AT GA L G + + YT +R++ ++ +++ Sbjct: 246 VLRHSFATHLLAHGADLRALQMLLGHADIATTQIYTHVQTERLQKAVQAHHPLAA 300 >gi|307721281|ref|YP_003892421.1| tyrosine recombinase XerD subunit [Sulfurimonas autotrophica DSM 16294] gi|306979374|gb|ADN09409.1| tyrosine recombinase XerD subunit [Sulfurimonas autotrophica DSM 16294] Length = 275 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 39/259 (15%), Positives = 82/259 (31%), Gaps = 10/259 (3%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 + + + +L+ S +++S I +K + T+ + S + S K+ + Sbjct: 5 LEAFLEYITVTRALSKKSVEAYKSDLCAIEKKL-SKPLICLDTQKLMSVLFSYKNK-RTL 62 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWSEG 189 + L+S+ F++ +Q + + ++ K + + ED+ G Sbjct: 63 NRKLSSVNAFFEFCYKQHF--SSQKTKLKFAKIPKLLPKFLSYEDILSGLDLIDRTNWIG 120 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249 + FL SG R S+ + ++ ++ K V L K + Sbjct: 121 KRDYALILFLYASGTRISECLELMLGDIEEGWLHVRHAKGEKERIVPLAKVAKKAVDEYM 180 Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMA 309 I K + S H +R AT GA + Sbjct: 181 FASAINKEYVWCNYQGGKLSRISAYKITQKY-LGVSPHVLRHSYATSLIRGGADLRVVQE 239 Query: 310 TYGWKTVDQAETYTKGADR 328 G ++ + YT + Sbjct: 240 LLGHASLLTTQIYTHIQKQ 258 >gi|254522819|ref|ZP_05134874.1| tyrosine recombinase XerD [Stenotrophomonas sp. SKA14] gi|219720410|gb|EED38935.1| tyrosine recombinase XerD [Stenotrophomonas sp. SKA14] Length = 325 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 47/296 (15%), Positives = 91/296 (30%), Gaps = 37/296 (12%) Query: 75 ISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESR---KH 128 I + + LA + S+ + + R D I + + R Sbjct: 28 IQRFLDAIWAENGLARATLDSYRRDLEGLARWMDGRDGGLAGIERPGLFDYLAWRTRHGW 87 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-- 186 +P S + L+++R F VR+ + +P ++ PK + + + + Sbjct: 88 SPRSNARLLSALRAYFADGVRRGERSEDPSALLDPPKLPRLLPKALAESQIDALLAAPDV 147 Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243 G + R E + +GLR S+ + I+ V L + Sbjct: 148 ERPLGLRDRAMLELMYAAGLRVSELVLLPATSVNLRQGVIRVTGKGSKERLVPLGEESQH 207 Query: 244 LLAMTPIGKETF-----------------FINNDKQKMNATQFSIWFKAKATKAGVN--- 283 L F+ + F K A AG++ Sbjct: 208 WLERYLQQSRPQLVGKGRVQALADGQTPLFVEPTLHALTRQAFWHLVKRHAQVAGIDPAR 267 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 S HG+R AT + GA L G ++ + YT + ++ +++ Sbjct: 268 ISPHGLRHSFATHLLNRGADLRALQMLLGHSSLSTTQIYT------LVAREHLQKL 317 >gi|223938788|ref|ZP_03630676.1| integrase family protein [bacterium Ellin514] gi|223892486|gb|EEF58959.1| integrase family protein [bacterium Ellin514] Length = 306 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 41/288 (14%), Positives = 96/288 (33%), Gaps = 35/288 (12%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRK--------SGDFDYRKITTK------- 117 L+ ++ + + +++ ++ + + + + + + +T Sbjct: 4 LVEDFLQYLRHERGQSEHTQKTYAALLGKFLNWAQIQKLTDWKEVELKHLTAFLMFERER 63 Query: 118 --HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 ++ G RK + S + ++R +K+A ++ + +N S+ P+R + + Sbjct: 64 LVEVKEGQSPRKLSSESVYLEIAALRAFYKFAENEKILPLNIAESLSLPRRWKRLPKALS 123 Query: 176 KEDMQQFKSFWSEGSQ----PRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTG 230 ++ Q + + + E SGLR ++ ++ L F K Sbjct: 124 DLEITQLLTLEIPETPRTLGDQAVLELAYASGLRLAELRNIRMEQLHLEVGFINVIGKGN 183 Query: 231 TIITVELPDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKA 280 V + ++ L P F+ A K + ++ Sbjct: 184 KERVVPVGSKAVQALQRYLESGRPKLVTPRSPANVFLTMRGTPFAAVTLWKRIKDRVKRS 243 Query: 281 GV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 GV N + H +R AT + GA + G + E YT + Sbjct: 244 GVARNVTPHMLRHSFATHLLEHGADLRVIQELLGHANISTTEIYTHVS 291 >gi|270294768|ref|ZP_06200969.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270274015|gb|EFA19876.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 294 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 39/272 (14%), Positives = 89/272 (32%), Gaps = 25/272 (9%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSGVESRKHTP-- 130 +Y + + + + + ++ R GD + + +R + S Sbjct: 9 DYLLHE--RNYSKGTVEYYRADILELQRFGEEMLGDLTPSDVDAELVREWIASLMDKGLA 66 Query: 131 -SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--- 186 ++ + L+S+R +K+ +R+ VA++P V PK+K + +M + Sbjct: 67 SNTINRKLSSVRTYYKFLLRRGKVAVDPLRKVTGPKKKKPLPVFLREGEMNRLLDDMDFG 126 Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDG--- 240 EG + + E +G+R S+ + + + T K + + Sbjct: 127 EGFEGCRDHMIIEMFYATGMRLSELIGLDDKDVDFSASLVKVTGKRNKQRLIPFDEELGR 186 Query: 241 -FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK------AGVNKSAHGVRKFS 293 + + + +K + + +S H +R Sbjct: 187 SMREYVNVRNEAVPVRSDAFFVRKNGKRLYRSIVACLVKRNLSKVVTVKKRSPHVLRHTF 246 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKG 325 AT + GA + G +++ E YT Sbjct: 247 ATAMLNNGADLGSIKELLGHESLATTEVYTHT 278 >gi|237721112|ref|ZP_04551593.1| phage integrase [Bacteroides sp. 2_2_4] gi|229449947|gb|EEO55738.1| phage integrase [Bacteroides sp. 2_2_4] Length = 327 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 43/285 (15%), Positives = 101/285 (35%), Gaps = 24/285 (8%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---H 128 +IS++ + L +S + I G ++I T +R + +K Sbjct: 41 SQIISKFFIAKAVEGLCQSSLDYYRVILRAFILHVG-KHIKEIVTDDVRVYLAYKKINKC 99 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + ++ ++ F W + + NP L ++ ++ + +P +++DM++ + Sbjct: 100 SDNTLNNIRRTLSSFFTWCTEEGVLDRNPMLRIKGVRQVKKLKKPLSEDDMER-LRSLAR 158 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL---- 244 + + EFL +G R S+ + + I G K+ Sbjct: 159 TKRNKAIIEFLFSTGCRVSEMVNVNLGDVDWQNGQIDVLGKGRKYRTVYLSARCKIALQE 218 Query: 245 -------------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVR 290 L+ + N +++ I + KAG+ N H +R Sbjct: 219 YVDSRTDDLEALFLSDYEGMCQQIKDMNKLSRISKGAVEIMLRNLGKKAGISNVHPHRLR 278 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIK 334 + +AT + G ++ G ++++ Y + D ++L + Sbjct: 279 RTAATTALKRGMPIEQVQKMLGHESIETTTIYAQSTNDEVKLAHE 323 >gi|295706292|ref|YP_003599367.1| tyrosine recombinase XerC [Bacillus megaterium DSM 319] gi|294803951|gb|ADF41017.1| tyrosine recombinase XerC [Bacillus megaterium DSM 319] Length = 300 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 39/289 (13%), Positives = 97/289 (33%), Gaps = 26/289 (8%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKI------TTKHIRSGV 123 +K +++ + + + + + +E + + + + + + + Sbjct: 4 VKDVLNSFLEYLQIEKNYSKYTVDCYEKDIGIFMSFMQEEQIQNLQSVTYADARLFLTRL 63 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----M 179 ++++ S + ++ +R +++ R+E V NP V PK++ R +E+ Sbjct: 64 YEKQYSKRSMSRKISCLRTFYRYLNREELVEDNPFALVTLPKKEERNPRFLYEEEIVKLF 123 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239 Q G + + E L +G+R S+ + + ++ ++ G Sbjct: 124 QMNDLTTPLGQRNQSLLELLYATGIRVSECSSIKLSDIDFSLQTLLVYGKGKKQRYVPFG 183 Query: 240 GFMK-------------LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA--GVNK 284 + K LL P + F+N + + K ++ Sbjct: 184 CYAKGALRVYIDNGRKLLLKKAPSDTHSLFLNYKGTPLTDRGIRLVIDQLVKKTAENIHI 243 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 S H +R AT + GA + G + + + YT + Sbjct: 244 SPHVLRHTFATHMLNEGADLRTVQEMLGHEHLSTTQIYTHVTKDRLKAV 292 >gi|226227913|ref|YP_002762019.1| tyrosine recombinase XerC [Gemmatimonas aurantiaca T-27] gi|226091104|dbj|BAH39549.1| tyrosine recombinase XerC [Gemmatimonas aurantiaca T-27] Length = 324 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 46/296 (15%), Positives = 88/296 (29%), Gaps = 40/296 (13%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD------YRKITTKHIRSGVESRK 127 I E+ L+ N+ ++ + + ++T +IR + Sbjct: 19 IGEFLTHLEKERDLSPNTLQAYRRDLREFASWLAATHGIAGWEWNELTRTNIRGYMAHLT 78 Query: 128 HTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 S + L+++R ++W R E V +NP +V PK + + Sbjct: 79 RRGLAKRSIARQLSAVRSFYRWMHRDERVDVNPARAVGSPKLPRTLPAYLDRTQAETLMQ 138 Query: 185 F--------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITV 235 + E SGLR S+ + L + K V Sbjct: 139 HAATRAQSLEFTDVRNLAMLELFYSSGLRLSELRGVDLADLDLVSQQVKVRGKGRKERIV 198 Query: 236 ELPDGFMKLLAMTPIGKETFFIN------------------NDKQKMNATQFSIWFKAKA 277 L D + L + ++ +++A Sbjct: 199 PLGDHAQRALRNYLVKRDALIAQASGGAVGRRVARGAVFLSERGARISARAVQHAMVTLM 258 Query: 278 TKA--GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330 + G + + H +R AT DAGA + G ++ + YT DR++ Sbjct: 259 SAVSEGADLTTHSLRHTFATHLVDAGADLRAVQELLGHASISTTQIYTHTSVDRLK 314 >gi|88607829|ref|YP_504822.1| tyrosine recombinase XerC [Anaplasma phagocytophilum HZ] gi|88598892|gb|ABD44362.1| tyrosine recombinase XerC [Anaplasma phagocytophilum HZ] Length = 319 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 29/283 (10%), Positives = 79/283 (27%), Gaps = 34/283 (12%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIR---------------KSGDFDYRKITT 116 ++ + K + ++ ++ ++ + + + Sbjct: 16 DVVDAWVKCLEEEKRYSKHTVAAYLRDIRDFLQVVYGLRQEKSVVLITEMENLPMTEFRR 75 Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW-- 174 + ++ S ++ ++++R F++ R + + + P + + Sbjct: 76 WITIRCNQGKQS--VSNLRAISAIRNFFRYLQRNHGIKNDVVFHIVNPIVRKGLPKVLEK 133 Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234 + ++ + L GLR S++ L+ + K Sbjct: 134 SHVLKMVSENIHWTSRRDAAIVALLYGCGLRISEAVGLRFGDLEADAVR-VLGKGKKERI 192 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMN-----------ATQFSIWFKAKATKAGVN 283 + + KLL + T F+ +A G+ Sbjct: 193 IPILPWVQKLLDGYVESCPFHGTGCGNKASYVFLGVRGKVLDRTYFAHRMQALRRNMGLP 252 Query: 284 K--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + + H +R AT GA + G + + + YT Sbjct: 253 ESTTPHALRHSFATHLFLEGADIRVIQELLGHENLSTTQIYTH 295 >gi|330430524|gb|AEC21858.1| site-specific tyrosine recombinase XerC [Pusillimonas sp. T7-7] Length = 316 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 43/296 (14%), Positives = 87/296 (29%), Gaps = 39/296 (13%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---P 130 + ++ ++++ + +I+ D T HIR V P Sbjct: 8 MEQWLAHLQGHRRYSIHTLSGYRQDLHHLIQCHADLKLDHCTESHIRQAVARLHGQGLQP 67 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS--- 187 S + L + R F+W Q + NP V PK + + E Q Sbjct: 68 RSLARALAAWRGFFQWWAPQAGMESNPVAGVRAPKIPRSLPKALSVEQTQVLLDRPQLPA 127 Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------GT 231 + + FE L SGLR ++ ++ + + ++ G Sbjct: 128 PDTAIDCRDQAMFEVLYSSGLRLAELVSLDWRYARTGGYESQSWVQLDEQEAIVKGKGGK 187 Query: 232 IITVELPDGFMKLLAMTPIGKETF-------------FINNDKQKMNATQFSIWFKAKAT 278 V L + + ++ F+ ++++ + AT Sbjct: 188 TRNVPLGGKAIAAIQTWLQKRDQLLGGSSDPDTAAALFLGARGKRISPRVVQLQLNKLAT 247 Query: 279 KAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 G+ H +R A+ + + G + + YT+ D L Sbjct: 248 LVGLPVHVHPHSLRHSFASHMLQSAQDLRAVQELLGHANISTTQIYTR-LDFQHLA 302 >gi|167764388|ref|ZP_02436513.1| hypothetical protein BACSTE_02776 [Bacteroides stercoris ATCC 43183] gi|167697793|gb|EDS14372.1| hypothetical protein BACSTE_02776 [Bacteroides stercoris ATCC 43183] Length = 294 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 40/276 (14%), Positives = 93/276 (33%), Gaps = 24/276 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSGV---ES 125 L + + + + + + + ++ + GD + IR + Sbjct: 3 LTDSFLDYLLYERNYSEGTVRYYRTDILELQKFGEKLLGDLAPSDVGVDLIREWIVSLMD 62 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS- 184 + + P++ + L+S+R +K+ +++ VA +P V PK+K + ++ + Sbjct: 63 KGYAPNTVNRKLSSVRTYYKYLLKKGLVAADPLRRVTGPKKKKPLPVFLREGEVDRLLDD 122 Query: 185 ----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPD 239 EG + RL E +G+R S+ + + + T K + Sbjct: 123 VDFGERFEGYRDRLIIEMFYTTGMRLSELIGLDDKDVDFSASLIKVTGKRNKQRLIPFDK 182 Query: 240 GFMKLLAMTPIGKET---FFINNDKQKMNATQFSIWFKAKATKAGV-------NKSAHGV 289 + + + + + N + A + + +S H + Sbjct: 183 ELGRSMQEYVNVRNQALPVRSDAFFVRKNGERLGRGIVAYIVRRNLSKVVTVKKRSPHVL 242 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 R AT + GA + G +++ E YT Sbjct: 243 RHTFATAMLNNGADLSSIKELLGHESLATTEVYTHT 278 >gi|254181547|ref|ZP_04888144.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1655] gi|254298194|ref|ZP_04965646.1| tyrosine recombinase XerD [Burkholderia pseudomallei 406e] gi|157808367|gb|EDO85537.1| tyrosine recombinase XerD [Burkholderia pseudomallei 406e] gi|184212085|gb|EDU09128.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1655] Length = 329 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 44/275 (16%), Positives = 84/275 (30%), Gaps = 26/275 (9%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT----TKHIRSGVESRKHTPSSA 133 + + L+ N+ ++ + + +S+ Sbjct: 49 WLEH----GLSRNTLDAYRRDLQLFAQWLAARYAASVDHASEPTLTEYIAARSDGKATSS 104 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--- 190 + L+ R + WAVR+ A++P L + K+ ++ ++ + + Sbjct: 105 NRRLSVFRRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALLAAPDVDTPLG 164 Query: 191 -QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT 248 + R E + SGLR S+ + N ++ V + + Sbjct: 165 LRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVPFGEVAHGWIERY 224 Query: 249 PIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296 F+ M QF K A +A V + S H +R AT Sbjct: 225 LRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRVHLSPHTLRHAFATH 284 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 + GA + G + + YT A R RL Sbjct: 285 LLNHGADLRVVQLLLGHSDISTTQIYTHVA-RERL 318 >gi|47097538|ref|ZP_00235075.1| integrase/recombinase XerC [Listeria monocytogenes str. 1/2a F6854] gi|254828640|ref|ZP_05233327.1| integrase/recombinase XerC [Listeria monocytogenes FSL N3-165] gi|254898558|ref|ZP_05258482.1| hypothetical protein LmonJ_02045 [Listeria monocytogenes J0161] gi|254911951|ref|ZP_05261963.1| integrase/recombinase XerC [Listeria monocytogenes J2818] gi|254936278|ref|ZP_05267975.1| integrase/recombinase XerC [Listeria monocytogenes F6900] gi|47014086|gb|EAL05082.1| integrase/recombinase XerC [Listeria monocytogenes str. 1/2a F6854] gi|258601039|gb|EEW14364.1| integrase/recombinase XerC [Listeria monocytogenes FSL N3-165] gi|258608867|gb|EEW21475.1| integrase/recombinase XerC [Listeria monocytogenes F6900] gi|293589913|gb|EFF98247.1| integrase/recombinase XerC [Listeria monocytogenes J2818] Length = 300 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 36/274 (13%), Positives = 87/274 (31%), Gaps = 27/274 (9%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHIRSGVESRKHTP 130 +Y S + +VN+ ++E+ R + + + + ++ + + Sbjct: 13 DYLHSE--RNYSVNTSTAYENDLLDFRRFLNEQAITTYQQVTFLDVRIYLTELKQKSFSR 70 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG- 189 ++ + ++S+R + + +R+ + NP V K + + + E+M+ E Sbjct: 71 TTVARKISSLRSFYTFLLRENVINENPFTYVSHAKNQLRLPKFFYSEEMEALFQVVYEDN 130 Query: 190 ----SQPRLAFEFLLYSGLRCSDSCRAG-VQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 + R+ E L +G+R S+ + + K V Sbjct: 131 ETLTLRDRVLLEVLYGTGIRVSECAGILLPDLDTSYQAILIRGKGNKERYVPFGAYAEDA 190 Query: 245 LAMTPIGKETFF-----------INNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRK 291 + + +N+ + +KA + H +R Sbjct: 191 ITDYLPERVNLMSRYKKSHDALLVNHYGDPLTTRGIRYCLTKIISKASLTRKIHPHMLRH 250 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKG 325 AT + GA + G ++ + YT Sbjct: 251 TFATDLLNNGADMRTVQELLGHASLSSTQIYTHV 284 >gi|320353143|ref|YP_004194482.1| integrase family protein [Desulfobulbus propionicus DSM 2032] gi|320121645|gb|ADW17191.1| integrase family protein [Desulfobulbus propionicus DSM 2032] Length = 393 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 48/355 (13%), Positives = 105/355 (29%), Gaps = 23/355 (6%) Query: 9 PFVTKERTRHGKIIY-YFRKGHGRRI--RLPYPHESTFIPAYMSALTGSTPK-----REY 60 F+ + R+ GK ++ HGR+I ++ TF A +A + Sbjct: 32 GFIVEVRSTGGKTYALRYKDQHGRQIQHKIGDAKSITFDKARNAAKVLRSQVVLGDSPAE 91 Query: 61 INSPRKKPTTLKWLI-SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119 +K TL Y + + + ++ G + +IT + Sbjct: 92 QRKSKKDVPTLAEFCSERYI--PFIKGYKRSWKNDDSLLRNHLLPPLGTYRMNEITQIMV 149 Query: 120 RSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + A + L ++ +F A++ E + +V+ + + Sbjct: 150 ADLHHGMRANGFASGMANRVLVLLKYIFNLAIKWEVPDVKVNPAVDVKLYEATARERYLS 209 Query: 177 EDMQQFKSFWSE---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233 + Q E +Q + LL G R + + + S + + + Sbjct: 210 IEETQRLLEQLEKSKNTQLKYIAPLLLLLGCRKRELLDSRWEEFDLERRSWRIPMSKSGK 269 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF---SIWFKAKATKAGVN-KSAHGV 289 +P L + + + F + AG+ H + Sbjct: 270 ARHVPLSLSALEILRQLPRWEGCPYVIPNPDTRLPFVQMHRAWDNARKAAGLPDVRMHDL 329 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 R A+ ++G + +E+ G + + Y + L +S V Sbjct: 330 RHSMASNMVNSGRSIYEVAKVLGHSQLKTTQRYAHLSQETLLA--AVDAAASNVP 382 >gi|114778675|ref|ZP_01453487.1| tyrosine recombinase XerD [Mariprofundus ferrooxydans PV-1] gi|114551037|gb|EAU53599.1| tyrosine recombinase XerD [Mariprofundus ferrooxydans PV-1] Length = 299 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 40/265 (15%), Positives = 81/265 (30%), Gaps = 19/265 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRK---HTPSSAIQFLTS 139 + + S+ S + K I + P++ + ++ Sbjct: 23 RGWSPQTTSSYRSDLLHADSYFVDHHTSLMQADGKAILDYLAKLGRDGMKPTTIQRRRSA 82 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLA 195 + F W Q +P + + ++ + ++ D+++ + G + R Sbjct: 83 LSTWFTWLQDQNLREDHPARHLPKLRKSRPLPKMMSEHDVERLLAAPETEDPVGLRDRCM 142 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT------ 248 E L +G+R S+ ++ + ++ + + + L Sbjct: 143 LELLYATGVRVSELVSLTRGQVEMDAGLLRVIGKGDKERLIPFGEEAGQWLQQWLLLRPA 202 Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHE 306 F M F + K AT AG+ S H +R AT + GA Sbjct: 203 KPASPYLFAGRGGHAMTRQNFWLRIKRYATMAGIMPLPSPHTLRHAFATHLLNHGADLRA 262 Query: 307 LMATYGWKTVDQAETYTKGADRIRL 331 + G V E YT R R+ Sbjct: 263 VQMLLGHAHVTTTEIYTH-VSRARM 286 >gi|325293997|ref|YP_004279861.1| site-specific tyrosine recombinase XerC [Agrobacterium sp. H13-3] gi|325061850|gb|ADY65541.1| site-specific tyrosine recombinase XerC [Agrobacterium sp. H13-3] Length = 311 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 43/296 (14%), Positives = 86/296 (29%), Gaps = 35/296 (11%) Query: 70 TLK--WLISE---YRKSAH-WGSLAVNSRISFESYFDQIIRKSGDF--------DYRKIT 115 T L++E + + LA N+ ++E Q + + D + Sbjct: 6 TFATPDLLNERQSWLAAIAGERRLADNTVEAYERDTRQFLTFLTGYIGKPASIADIADLR 65 Query: 116 TKHIRSGVESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 +R+ + SR+ + A + L +R + ++ V ++ PK+ + Sbjct: 66 PVDLRAFLASRRKEGAGARSLGRHLAGLRSFLHYLQKKRLVNAAGATAMRSPKQPKSLPK 125 Query: 173 PWTKED-------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225 P T Q ++ L GLR S++ + S++ Sbjct: 126 PLTDRQALKITTTEAQLNEEPWIAARNAAVLSLLYGCGLRISEALGLAPADFTPDARSLR 185 Query: 226 TQKT-GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-------FSIWFKAKA 277 V L + + + + A + Sbjct: 186 ITGKGNKTRMVPLLAVVTEAVEAYKKLCPYHLAADQPLFLGARGGKLQPAIIQREMQKLR 245 Query: 278 TKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 G+ + H +R AT G + G ++ + YT G D RL Sbjct: 246 GAFGLPENATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQIYT-GVDTARL 300 >gi|319406365|emb|CBI80006.1| integrase/recombinase XerD [Bartonella sp. AR 15-3] Length = 312 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 42/309 (13%), Positives = 99/309 (32%), Gaps = 42/309 (13%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVESR 126 +I + + +V + ++++ K + + ++ S ++ Sbjct: 5 AVIDRFLEMMSAERGASVRTLLAYQHDLQWAQNKLSSRSISFFSAQREDLINLLSLMQIA 64 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-------------- 172 +S + L+++R F++ + +P ++ P++ + Sbjct: 65 GCAATSQARRLSTLRQFFQFLYAEGLREDDPSNDIDSPRQGRPLPKIISEDAVTKLLDFA 124 Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGT 231 + + + + + E L +GLR S+ VQ ++ I K G Sbjct: 125 QLETDQAEYGSQNYYRALRLWVFLEMLYATGLRISELVSLPVQAVRRKEAFILVRGKGGK 184 Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ---------FSIWFKAKATKAGV 282 V + + ++L+ I ++ A + K A +AG+ Sbjct: 185 ERVVLVSEKARQVLSQWLILRDQGKDATSFYLFPARSSTGYIARQFVARGLKDLAKRAGI 244 Query: 283 ---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 N S H +R A+ GA + G + + YT + R+ Sbjct: 245 QSENFSPHVLRHAFASHLLQNGADLRAVQHLLGHCDISTTQIYTHVLE---------ARL 295 Query: 340 SSVVDSDDP 348 +V+ P Sbjct: 296 HRLVNEHHP 304 >gi|307262299|ref|ZP_07543948.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306868062|gb|EFM99889.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 336 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 40/292 (13%), Positives = 92/292 (31%), Gaps = 24/292 (8%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI------TTKHIRSGVESRKHTP 130 +Y + + ++ +++ + T + I + + Sbjct: 47 DYLRIEKQA--SQHTLSNYQRQLLAVSDMLSQAGISTWQEVNSATVRWIIAQSNKQGLGA 104 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWS 187 S L ++R F + +RQE +++NP + ++ PK + E + Q + Sbjct: 105 KSIALRLVALRQWFSYLIRQEKMSVNPAVGIKAPKASKRLPKNIDAEQIGQLLTSDSHEP 164 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA 246 + E + SGLR S+ + + ++ K V + ++ L Sbjct: 165 SDLRDLAMMELMYSSGLRLSELQGLDLGDMDLAGREVRLLGKGNKERIVPIGSKALEALN 224 Query: 247 MTPIGKETFFINNDKQ-------KMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297 + F ++ +++ + + K G+ + H +R AT Sbjct: 225 RWLAVRNQFKPQDNAVFLNKRGGRLSHRSIQLVMQKWGEKQGLESHLHPHKLRHSFATHM 284 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLG--IKNSRRISSVVDSDD 347 +A + G + + YT D L + + DD Sbjct: 285 LEASGDLRAVQELLGHSNLATTQIYTH-LDFQHLAKIYDAAHPRAKRKKQDD 335 >gi|254494929|ref|ZP_01052592.2| phage integrase family protein [Polaribacter sp. MED152] gi|213690511|gb|EAQ42020.2| phage integrase family protein [Polaribacter sp. MED152] Length = 315 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 41/275 (14%), Positives = 104/275 (37%), Gaps = 26/275 (9%) Query: 74 LISEYRKSA-HWGSLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSGVESR-- 126 LI + H + + ++ I+++ + D ++ IRS + S Sbjct: 22 LIKAFLDYLSHEKNYSKHTVIAYQKDLNSFKSFIRINFDQEDLLEVNYSQIRSWIVSLVE 81 Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + + + + ++S++ +K+ + E + NP + K + P++++++ Sbjct: 82 EEISNRTINRKISSLKSFYKFLQKTEQIKSNPLQKHKALKVAKKVQVPFSQKEVATVLES 141 Query: 186 WSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDG 240 +E S + +L E +G+R ++ ++ + + K V + + Sbjct: 142 NTENSFVSIRNKLMVEIFYSTGIRRAELINIQLKDINSGSNVLKVLGKRNKERLVPILNS 201 Query: 241 FMKLLAMTPIGKETFFINNDKQKMN-----------ATQFSIWFKAKATKAGVNKSAHGV 289 +K L + ++ N++ + + +F ++K V KS H + Sbjct: 202 VLKTLNLYLGHRKNISNNSEYLFITEKGNKIYETLVYRVINSYFSKVSSK--VKKSPHML 259 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT + GA + + G ++ + YT Sbjct: 260 RHSFATHLLNEGADLNSVKELLGHSSLASTQVYTH 294 >gi|167752437|ref|ZP_02424564.1| hypothetical protein ALIPUT_00681 [Alistipes putredinis DSM 17216] gi|167660678|gb|EDS04808.1| hypothetical protein ALIPUT_00681 [Alistipes putredinis DSM 17216] Length = 309 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 39/277 (14%), Positives = 83/277 (29%), Gaps = 31/277 (11%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRKHT--- 129 +Y + + + ++ + DFD R+IT + +R + R T Sbjct: 7 QYLATV--RRFSPLTVQNYRRDVTNFLEWLDVPEADFDPRRITVEDVREWIVHRTETKHL 64 Query: 130 -PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +S + L+S+R F++ R + + K M+ Sbjct: 65 GAASMNRELSSLRSFFRYLHRTGRIDKEVMYRIHALKTSRRIPAFVPSTRMEGILDELDR 124 Query: 189 GS--------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPD 239 S + L GLR ++ + + K V + Sbjct: 125 ESESPEFKFVRNSLIVLLFYSCGLRLAELVGIDRDDFSGDYTALKVRGKGDKERIVPILP 184 Query: 240 GFMKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGV--NKSAH 287 + + + I ++++ + +++ + GV KS H Sbjct: 185 PVREKILHYLDEIDRQGICISKEKALFLNQQGKRISRSTVYRTVQSQLRQGGVQGKKSPH 244 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT + GA + G ++ + YT Sbjct: 245 VLRHTFATELLNNGADMRAIQELLGHASLQATQVYTH 281 >gi|116050518|ref|YP_790663.1| putative integrase [Pseudomonas aeruginosa UCBPP-PA14] gi|115585739|gb|ABJ11754.1| putative integrase [Pseudomonas aeruginosa UCBPP-PA14] Length = 401 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 62/368 (16%), Positives = 113/368 (30%), Gaps = 26/368 (7%) Query: 7 LPPFVTKERTRHGKI----IYYFRKGHGRRIRLPYPHESTFIPAY-----MSALTGSTPK 57 L P + T G+ Y G R+ L E T A A Sbjct: 27 LVPGFLCKVTPTGRKVFMLQYRTNSGVRRKPSLGQFGELTVEQARSLAQDWLAEVRRGGD 86 Query: 58 REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITT 116 + +K T+K L + +++ ++ D I G ++T Sbjct: 87 PGLDKADARKAPTVKELCGRFMDDHSKPHNKPSTQAGYQYQIDTFVIPAFGTKKVHEVTR 146 Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 I + ++ + +P+ A + L+ +R +F A Y PK +G Sbjct: 147 NDITALMKRMEKSPTQANRVLSLVRKMFNLAELWGYRPDGSNPCRHVPKYPEKGSTRLIT 206 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-------------IFS 223 +D + + ++ +L +R A + + Sbjct: 207 DDQMVKLFAYLDKAEAENLEHPILLLAVRLQFEFAARMSEILLLQWDWLDLPNGRVVWPD 266 Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 KT ++ E I + +Q ++ + ++ + AGV Sbjct: 267 SKTGDMSKPLSEEAKRRLTSAPRYGDSPYVCPAIIDHRQPLSPHTYYQGWRRILSNAGVP 326 Query: 284 K-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSR-RIS 340 K HG+R SAT A++G MA KTV Y D +R + R Sbjct: 327 KVGTHGIRHRSATDIANSGVPVKVGMALTAHKTVAMFMRYVHTEDDPVRQAAELVATRRQ 386 Query: 341 SVVDSDDP 348 ++ P Sbjct: 387 TITGKRQP 394 >gi|163859107|ref|YP_001633405.1| site-specific tyrosine recombinase XerC [Bordetella petrii DSM 12804] gi|163262835|emb|CAP45138.1| putative integrase/recombinase [Bordetella petrii] Length = 326 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 45/310 (14%), Positives = 92/310 (29%), Gaps = 41/310 (13%) Query: 63 SPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQI--IRKSGDFDYRKITTKHI 119 + P TL + + + + ++ ++ Q+ + ++ ++ HI Sbjct: 4 AEPAPPDTLPQPLDAWLQHLRAHRRYSPHTLDAYRRDLRQLAVLAQAAGLPLEQLANGHI 63 Query: 120 RSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 R V P S + L + R ++W +A NP V PK + + Sbjct: 64 RQFVARLHAQGLGPRSLARTLAAWRGFYQWWAPGAGLAGNPVAGVRAPKAARGLPKALSV 123 Query: 177 EDMQQFKSF-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229 E Q G + R FE L SGLR S+ +++ ++ + ++ Sbjct: 124 EQAQALLDHATSRLATDPAGLRDRAMFELLYSSGLRLSELVGLDIRYERSADYESRSWLN 183 Query: 230 ------------GTIITVELPDGFMKLLAMTPIGKETFFINNDK-------------QKM 264 G V + + L + +++ Sbjct: 184 LDDAEVVVLGKGGKRRAVPVGQAALTALRRWIDARPQLAAAAASAGDAAALFVGARGRRI 243 Query: 265 NATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 + A AG+ H +R A+ + + G + + Y Sbjct: 244 APRVVQLQLARLAQAAGLPAHVHPHVLRHSFASHVLQSAQDLRAVQEMLGHANISTTQIY 303 Query: 323 TKGADRIRLG 332 T+ D L Sbjct: 304 TR-LDFQHLA 312 >gi|187922354|ref|YP_001893996.1| site-specific tyrosine recombinase XerC [Burkholderia phytofirmans PsJN] gi|187713548|gb|ACD14772.1| tyrosine recombinase XerC [Burkholderia phytofirmans PsJN] Length = 307 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 42/294 (14%), Positives = 90/294 (30%), Gaps = 31/294 (10%) Query: 69 TTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127 T I+ Y + L+ ++ + +++ + + +T IR V Sbjct: 1 MTAADPIAAYLSNLEHERRLSAHTLRGYAHELEELKQLAKGRPLESLTPVDIRGAVSRAH 60 Query: 128 HTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 +A L++ R ++W + +A NP +V PK+ + + +D + Sbjct: 61 AGGLTARSISHRLSAWRAFYRWLAGRVDLAANPVATVRAPKQAKPLPKALSVDDATRLME 120 Query: 185 ----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ------------K 228 EG + E SGLR ++ + + + K Sbjct: 121 SPPAASPEGLRDHAMLELFYSSGLRLAELVGLDARFADADGYRSAGWLKLDSAEVEVLGK 180 Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKA 280 V + ++ L ++ ++ +++ K A A Sbjct: 181 GNRRRVVPVGSKALEALGAWLAVRDQMVKHDPHPLFLSARGNRLSPNVVRERVKRAALVA 240 Query: 281 GVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 G+ H +R AT + + G ++ + YT D L Sbjct: 241 GIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYT-ALDFQHLA 293 >gi|220931948|ref|YP_002508856.1| phage integrase family protein [Halothermothrix orenii H 168] gi|219993258|gb|ACL69861.1| phage integrase family protein [Halothermothrix orenii H 168] Length = 310 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 46/293 (15%), Positives = 86/293 (29%), Gaps = 36/293 (12%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-------GDFDYRKITTKHIRSGVES-- 125 +Y + + + +E + DF KI HI + Sbjct: 14 FKKYLATE--RGYSPLTVKEYERDLNLFYIYLTNEMGFKNDFSLDKINKYHIAEFLGDTI 71 Query: 126 --RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC---LSVERPKRKTEGIRPWTKEDMQ 180 + P++ + L S+R FK+ V+ EY+ +NP + + R Sbjct: 72 LVHDNAPTTRNRKLYSIRSFFKFLVKYEYIKVNPAATIEASKTEVRAEPIYMKLNDAQKY 131 Query: 181 QFKSFWSEG---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236 G + + LY+GLR S+ + + SIK V Sbjct: 132 IETIKKHGGVNLKRDLAIVKLFLYAGLRVSELVGLDLDDIDFKDQSIKFYGKGKKERYVP 191 Query: 237 LPDGFMKLLAMTPIGKETFFINN-----------DKQKMNATQFSIWFKAKATKAGVN-- 283 L + + + N ++++ + K A AGV Sbjct: 192 LHPDVIMSIKNYFPERNEIQPKNEDAIKALFLSRHGKRISVRTIQMMVKKYAKLAGVKNA 251 Query: 284 --KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGI 333 + H +R A++ L G + + YT + + I Sbjct: 252 DKITPHKLRHTFASLLYHKTKDLKILQDLLGHADISTTQIYTHTDVKQRKKAI 304 >gi|53715486|ref|YP_101478.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] gi|60683459|ref|YP_213603.1| putative site-specific recombinase [Bacteroides fragilis NCTC 9343] gi|265767527|ref|ZP_06095193.1| tyrosine recombinase XerC [Bacteroides sp. 2_1_16] gi|52218351|dbj|BAD50944.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] gi|60494893|emb|CAH09700.1| putative site-specific recombinase [Bacteroides fragilis NCTC 9343] gi|263252832|gb|EEZ24344.1| tyrosine recombinase XerC [Bacteroides sp. 2_1_16] gi|301164943|emb|CBW24504.1| putative site-specific recombinase [Bacteroides fragilis 638R] Length = 293 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 42/276 (15%), Positives = 96/276 (34%), Gaps = 24/276 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSGV---ES 125 L + + + + + +++ Q+ FD ++ + +R + Sbjct: 2 LTDSFLDYLRYERNYSEKTVLAYGEDISQLREFAQERMEKFDPAEVKPELVREWIVSLMD 61 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + +T +S + L+S+R +K+ +RQ V+++P + PK K + +M + Sbjct: 62 QGYTSTSVNRKLSSLRSFYKYLLRQGEVSVDPLRKITGPKNKKPLPSFLKESEMNKLLDD 121 Query: 186 W-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPD 239 +G + RL E +G+R S+ + + + T K + D Sbjct: 122 TDFGEGFKGCRDRLIIEMFYATGMRLSELIGLDDKDVDFSASLLKVTGKRNKQRLIPFGD 181 Query: 240 GFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKA--GVNKSAHGV 289 + + + F+ + +++ K +K +S H + Sbjct: 182 ELKETMLEYVDIRNEMISGRSDAFFVRENGERLYKNLVYNLVKRNLSKVVTLKKRSPHVL 241 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 R AT + A + G ++ E YT Sbjct: 242 RHTFATTMLNNDAELGAVKELLGHSSLATTEIYTHT 277 >gi|46907504|ref|YP_013893.1| integrase/recombinase XerC [Listeria monocytogenes str. 4b F2365] gi|226223880|ref|YP_002757987.1| integrase/recombinase [Listeria monocytogenes Clip81459] gi|254852669|ref|ZP_05242017.1| integrase/recombinase XerC [Listeria monocytogenes FSL R2-503] gi|254932406|ref|ZP_05265765.1| integrase/recombinase XerC [Listeria monocytogenes HPB2262] gi|255520259|ref|ZP_05387496.1| integrase/recombinase [Listeria monocytogenes FSL J1-175] gi|300765313|ref|ZP_07075297.1| integrase/recombinase XerC [Listeria monocytogenes FSL N1-017] gi|71153411|sp|Q720E4|XERC_LISMF RecName: Full=Tyrosine recombinase xerC gi|259710432|sp|C1L2I5|XERC_LISMC RecName: Full=Tyrosine recombinase xerC gi|46880772|gb|AAT04070.1| integrase/recombinase XerC [Listeria monocytogenes serotype 4b str. F2365] gi|225876342|emb|CAS05051.1| Putative integrase/recombinase [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258605987|gb|EEW18595.1| integrase/recombinase XerC [Listeria monocytogenes FSL R2-503] gi|293583963|gb|EFF95995.1| integrase/recombinase XerC [Listeria monocytogenes HPB2262] gi|300513996|gb|EFK41059.1| integrase/recombinase XerC [Listeria monocytogenes FSL N1-017] gi|328468566|gb|EGF39566.1| tyrosine recombinase xerC [Listeria monocytogenes 1816] gi|328475121|gb|EGF45905.1| tyrosine recombinase xerC [Listeria monocytogenes 220] Length = 300 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 36/274 (13%), Positives = 87/274 (31%), Gaps = 27/274 (9%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHIRSGVESRKHTP 130 +Y S + +VN+ ++E+ R + + + + ++ + + Sbjct: 13 DYLHSE--RNYSVNTSTAYENDLLDFRRFLNEQAITTYQQVTFLDVRIYLTELKQKSFSR 70 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG- 189 ++ + ++S+R + + +R+ + NP V K + + + E+M+ E Sbjct: 71 TTVARKISSLRSFYTFLLRENVINENPFTYVSHAKNQLRLPKFFYSEEMEALFQVVYEDN 130 Query: 190 ----SQPRLAFEFLLYSGLRCSDSCRAG-VQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 + R+ E L +G+R S+ + + K V Sbjct: 131 ETLTLRDRVLLEVLYGTGIRVSECAGILLPDLDTSYQAILIRGKGNKERYVPFGVYAEDA 190 Query: 245 LAMTPIGKETFF-----------INNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRK 291 + + +N+ + +KA + H +R Sbjct: 191 ITDYLPERANLMSRYKKSHDALLVNHYGDPLTTRGIRYCLSKIISKASLTRKIHPHMLRH 250 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKG 325 AT + GA + G ++ + YT Sbjct: 251 TFATDLLNNGADMRTVQELLGHASLSSTQIYTHV 284 >gi|269928745|ref|YP_003321066.1| integrase family protein [Sphaerobacter thermophilus DSM 20745] gi|269788102|gb|ACZ40244.1| integrase family protein [Sphaerobacter thermophilus DSM 20745] Length = 376 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 47/361 (13%), Positives = 104/361 (28%), Gaps = 43/361 (11%) Query: 22 IYYFR---KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78 + R G R R + + L + +++Y + T+K + + Sbjct: 19 YWEARMTFWEQGTRRRKSFYGRT--RQEVADKLARALVEQQYGLPVVSERETVKDYLERW 76 Query: 79 RKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAI 134 + SL + S+ + G +++ ++ + ++ +P + Sbjct: 77 LEDVARPSLRPRTYESYRGIITRHLTPALGRTRLARLSPDQVQRYINQKQAAGLSPRTVT 136 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194 +R A+R V+ N PK+ R T E+ + F G + Sbjct: 137 YHRAVLRKALNDAMRWGLVSRNAAALAAPPKQDRPPARFLTPEEARHFLDT-VAGHRLEA 195 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------------------- 232 F L GLR ++ + ++ + Sbjct: 196 LFTVALAVGLRQGEALGLRWDDVDLEAGTLTVRYALQRSGGALVLVEPKTQRSRRTVALP 255 Query: 233 -------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 ++ A + F + ++A + F +AG+ Sbjct: 256 AVALRALREHRTRQLEERIAAPYWDDQGFVFTSTIGTAIDARNLTREFHRLRAEAGLPWL 315 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGIKNSRRISSVV 343 H +R A++ G +M G + TY+ A L + +I ++ Sbjct: 316 RFHDLRHGCASLLMAQGVNPRVVMEILGHSQITLTLGTYSHVAPT--LARDAADKIDGIL 373 Query: 344 D 344 Sbjct: 374 G 374 >gi|254463512|ref|ZP_05076928.1| tyrosine recombinase XerD [Rhodobacterales bacterium HTCC2083] gi|206680101|gb|EDZ44588.1| tyrosine recombinase XerD [Rhodobacteraceae bacterium HTCC2083] Length = 314 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 42/308 (13%), Positives = 94/308 (30%), Gaps = 42/308 (13%) Query: 74 LISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSG---VESRK 127 IS + + A N+++++ H+ + +++ Sbjct: 10 WISTFLDAQAAELGAATNTQLAYARDLKDFAEYLSGRKLSFENAARDHVEAYLIFCDAQG 69 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185 S+ + L++++ L+++ + + + NP + + P + + ++ + Sbjct: 70 LAKSTRARRLSAIKQLYRFGFEEGWRSDNPAIQIAGPGKDKRLPKTLNMGEVDGLLAAAR 129 Query: 186 -----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD 239 ++ + E L +G+R S+ + + N + K V L Sbjct: 130 VVGRSPTDRLRNTCLMELLYATGMRVSELVSLPISAARGNPSMLLIRGKGDKERMVPLSP 189 Query: 240 GFMKLLAMTPIG----------------KETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 L + F + + +F I K + AGV Sbjct: 190 PARDALTEWLETLDDLQEAGRLKGKAVSRFLFPSRGKEGHLTRHRFYILIKELSVHAGVP 249 Query: 284 ---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 + H +R AT + GA + G V E YT + R+ Sbjct: 250 PAKVTPHTLRHAFATHLLENGADLRSIQTLLGHADVATTEIYTHVLE---------ARLQ 300 Query: 341 SVVDSDDP 348 +V P Sbjct: 301 ELVLQHHP 308 >gi|160947529|ref|ZP_02094696.1| hypothetical protein PEPMIC_01463 [Parvimonas micra ATCC 33270] gi|158446663|gb|EDP23658.1| hypothetical protein PEPMIC_01463 [Parvimonas micra ATCC 33270] Length = 324 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 36/298 (12%), Positives = 93/298 (31%), Gaps = 44/298 (14%) Query: 74 LISEYRKSA-HWGSLAVNSRISFESYFDQIIRK-------SG----------------DF 109 ++ +Y + + + + ++ G Sbjct: 10 ILDDYLNYLLTIKGRSNLTVKEYYYDLKRFLKFIIMRKKLFGYNLNSDINSVSILSINKR 69 Query: 110 DYRKIT----TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY-VAINPCLSVERP 164 D I +I + + + + +++++ FK+ + NP +E P Sbjct: 70 DILDIDISDLHAYISFCDSNYNDSTKTKARKISAIKSWFKYLHNTVELINKNPAEKLELP 129 Query: 165 KRKTEGIRPWT------KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218 K + T + + + ++ L GLR S+ ++ ++ Sbjct: 130 KLQKRNPVYLTLSESEKVINSIKEEKNEFNRTRDLCIILIFLTCGLRISELTGINIESIK 189 Query: 219 NNIFSIKTQKTGTIITVELPDGFMKL-----LAMTPIGKETFFINNDKQKMNATQFSIWF 273 ++ S+ + I + + L F+++ K++++ + Sbjct: 190 DDKLSVIGKGNKERIVFLNENCIYAIKSYLQLRPCTKNTTALFLSSHKKRISNRSIQLRL 249 Query: 274 KAKATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD 327 K AG++ + H +R +AT+ G + + G +V + YT D Sbjct: 250 KKYILLAGLDPKIYTPHKLRHTAATLMYKYGDVDIRTIQSILGHTSVATTQIYTHLDD 307 >gi|16519918|ref|NP_444038.1| DNA integration/recombination/inversion protein [Sinorhizobium fredii NGR234] gi|2497415|sp|P55632|Y4QK_RHISN RecName: Full=Putative integrase/recombinase y4qK gi|2182597|gb|AAB92466.1| DNA integration/recombination/inversion protein [Sinorhizobium fredii NGR234] Length = 308 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 32/262 (12%), Positives = 82/262 (31%), Gaps = 17/262 (6%) Query: 80 KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQ 135 + + ++N+++S+ R G + + IR+ +K P+S Sbjct: 26 EDMQVRNFSLNTQLSYLRQVSLFARHFGKAP-DLLGREDIRTYQVYLANEKKLAPNSIHI 84 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195 + ++R F + +++V ++P + + +++Q F + Sbjct: 85 AIAALRFFFSVTLERDWVPAEVLPLPKKP---QKLPIILSPDEVQHFLG-CVLDLKHHAI 140 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKE 253 +GLR S++ + + + ++ K V L +++L Sbjct: 141 LTTCYAAGLRISEAVQLKPTDIDSQRMVVRVEQGKGQKDRYVMLSPKLLEILRDYWRMPR 200 Query: 254 TFFINNDK----QKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSATISADAGATAHEL 307 + ++ + H +R A +AGA + Sbjct: 201 PKEWLFPGDRAGHPITRDAVGQACAKAHDLSRLSKPVTPHSLRHAFAVHLLEAGADVRTI 260 Query: 308 MATYGWKTVDQAETYTKGADRI 329 G +++ Y + A Sbjct: 261 QLLLGHRSLATTAHYLRIATNK 282 >gi|307246735|ref|ZP_07528805.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307255720|ref|ZP_07537524.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307260172|ref|ZP_07541882.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306852435|gb|EFM84670.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306861397|gb|EFM93387.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306865818|gb|EFM97696.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 336 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 40/292 (13%), Positives = 92/292 (31%), Gaps = 24/292 (8%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI------TTKHIRSGVESRKHTP 130 +Y + + ++ +++ + T + I + + Sbjct: 47 DYLRIEKQA--SQHTLSNYQRQLLAVSDMLSQAGISTWQEVNSATVRWIIAQSNKQGLGA 104 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWS 187 S L ++R F + +RQE +++NP + ++ PK + E +Q + Sbjct: 105 KSIALRLVALRQWFSYLIRQEKMSVNPAVGIKAPKASKRLPKNIDAEQAEQLLTSDSHEP 164 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA 246 + E + SGLR S+ + + ++ K V + ++ L Sbjct: 165 SDLRDLAMMELMYSSGLRLSELQGLDLGDMDLAGREVRLLGKGNKERIVPIGSKALEALN 224 Query: 247 MTPIGKETFFINNDKQ-------KMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297 + F ++ +++ + + K G+ + H +R AT Sbjct: 225 RWLAVRNQFKPQDNAVFLNKRGGRLSHRSIQLVMQKWGEKQGLESHLHPHKLRHSFATHM 284 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLG--IKNSRRISSVVDSDD 347 +A + G + + YT D L + + DD Sbjct: 285 LEASGDLRAVQELLGHSNLATTQIYTH-LDFQHLAKIYDAAHPRAKRKKQDD 335 >gi|297170713|gb|ADI21736.1| site-specific recombinase XerD [uncultured actinobacterium HF0130_15N16] Length = 317 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 43/302 (14%), Positives = 101/302 (33%), Gaps = 30/302 (9%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTPSS 132 + ++ S +L ++R S+ + + + I S V + + + Sbjct: 14 VEQFMHSLESRNLQESTRYSYGRDLESFRSWLDGRGEEIMMVEEGTINSYVAHLRKSGRA 73 Query: 133 ---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + S+R +K+ + ++ ++P ++ K + E +++ + Sbjct: 74 PSGVARATVSIRSFYKYLTLEGHIKVDPGAAIAVLKVPQGFPKAIDIEKVERLLNTPVGE 133 Query: 190 ----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKL 244 + R E L +GLR S+ V + ++ V L Sbjct: 134 GPYVLRDRAILETLYGAGLRVSELTALVVDDVDLEDSFLRVFGKGRKERVVPLGGHAKDA 193 Query: 245 LAMTP----------------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 LA + F+N ++ + +AG+ + + Sbjct: 194 LAAWMSGAGREVLLERRKRTDQAQRNVFLNKFGNPLSRKGTWAIVRRHGLRAGLGDDLTP 253 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT--KGADRIRLGIKNSRRISSVVD 344 H +R AT +AGA+ + G ++ + YT + A+ + ++ R S+ + Sbjct: 254 HVLRHSCATHMLEAGASIRHVQELLGHSSIRSTQVYTGRREAELKAIYLEKHPRASAHLM 313 Query: 345 SD 346 D Sbjct: 314 ED 315 >gi|254362734|ref|ZP_04978818.1| site-specific recombinase XerC [Mannheimia haemolytica PHL213] gi|261491877|ref|ZP_05988456.1| site-specific recombinase XerC [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261494653|ref|ZP_05991133.1| site-specific recombinase XerC [Mannheimia haemolytica serotype A2 str. OVINE] gi|153094359|gb|EDN75214.1| site-specific recombinase XerC [Mannheimia haemolytica PHL213] gi|261309618|gb|EEY10841.1| site-specific recombinase XerC [Mannheimia haemolytica serotype A2 str. OVINE] gi|261312532|gb|EEY13656.1| site-specific recombinase XerC [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 303 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 39/267 (14%), Positives = 88/267 (32%), Gaps = 20/267 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTPSSAIQF---LT 138 ++ ++ +++ + G ++ ++ + +R + SA L Sbjct: 22 KQVSPHTLSNYQRQLMAVSELFSQAGIENWEEVESSSVRWMLSQSHKQGLSAKSIGLRLV 81 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRLA 195 ++R F + ++ ++ NP L V+ PK + E + Q + S+ + Sbjct: 82 ALRQWFVYLIKIGRMSANPTLGVKSPKVGKHLPKNIDAEQVGQLLAIESDEPSDIRDIAM 141 Query: 196 FEFLLYSGLRCSDSCRAG-VQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254 E + SGLR S+ + K V + +K L + Sbjct: 142 MELMYSSGLRLSELQGLDLGDMDLSAREVRVQGKGSKERIVPIGSQALKALNRWLEMRLQ 201 Query: 255 FFINNDKQ-------KMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305 F ++ +++ + K + G+ + H +R AT +A Sbjct: 202 FKPQDNAVFLNKRGGRLSHRSIQLAMKKWGERQGLESHLHPHKLRHSFATHMLEASGDLR 261 Query: 306 ELMATYGWKTVDQAETYTKGADRIRLG 332 + G ++ + YT D L Sbjct: 262 AVQELLGHSSLSTTQIYTH-LDFQHLA 287 >gi|153803069|ref|ZP_01957655.1| tyrosine recombinase XerC [Vibrio cholerae MZO-3] gi|124121388|gb|EAY40131.1| tyrosine recombinase XerC [Vibrio cholerae MZO-3] Length = 312 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 39/303 (12%), Positives = 100/303 (33%), Gaps = 24/303 (7%) Query: 68 PTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRS-- 121 P L + + H L++ ++ +++ + + + G + ++ + +R Sbjct: 10 PDALAQPLERFYAYLHTEKGLSLYTQRNYKQQLETMTQYLVQVGLTHWTQLDSAWVRQLV 69 Query: 122 -GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + + SS L+S+R + + + + NP V P+++ + ++M Sbjct: 70 MQGKRQGMKASSIATRLSSLRSFLDFLILRGELQANPAKGVSAPRKQRTLPKNLDVDEMA 129 Query: 181 QFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236 Q + + R E + +GLR ++ V+ + + I+ V Sbjct: 130 QLLEVTDDDPLSIRDRAIMELMYGAGLRLAELVSIDVKDVNLSEGEIRVIGKGNKERKVW 189 Query: 237 LPDGFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 + + + F++ +++ K V + S Sbjct: 190 FAGQAQEWVGKWLKLRSQLADSAETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISP 249 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG--IKNSRRISSVVD 344 H +R AT ++ + G + + + YT D L + + + Sbjct: 250 HKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTH-LDFQHLAKVYDQAHPRARKKN 308 Query: 345 SDD 347 + D Sbjct: 309 NKD 311 >gi|39995600|ref|NP_951551.1| PfpI family intracellular peptidase [Geobacter sulfurreducens PCA] gi|39982363|gb|AAR33824.1| site-specific recombinase, phage integrase family [Geobacter sulfurreducens PCA] gi|298504620|gb|ADI83343.1| site-specific recombinase, XerC [Geobacter sulfurreducens KN400] Length = 294 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 50/292 (17%), Positives = 92/292 (31%), Gaps = 31/292 (10%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRK-----SGDFDYRKITTKHIRSGVESRKHT-- 129 Y ++ ++ ++R ++ES Q I+ +R + + Sbjct: 10 RYLENERA--VSPHTRAAYESDLAQFRDFVRGELGAGAGAAAISHLLVRRWLAQLHQSHA 67 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----QFKSF 185 SS + L ++R F + VR + NP V PKR+ + +++ + Sbjct: 68 RSSIGRKLAAVRAFFTYLVRTGALPRNPAELVSTPKREKKVPFHLNIDEVTALVESPREP 127 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKL 244 + R E L G+R S+ V + +++ K G V + Sbjct: 128 GVLSLRDRAILETLYSCGVRVSELTGLNVGGIDLADGTVRVLGKGGKERVVPIGSHARLA 187 Query: 245 LAMTPIGKETF------FINNDKQKMNATQFSIWFKAKATK--AGVNKSAHGVRKFSATI 296 L+ + F N ++ A K A S H +R AT Sbjct: 188 LSSYLAARNHPPLEVPLFTNARGGRLTARSVRRVVDKHILKVAAMRKISPHTLRHTFATH 247 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 + GA + G ++ + YT R+ V D P Sbjct: 248 LLEGGADLRAIQELLGHASLSTTQKYTHV---------GIDRLMEVYDKAHP 290 >gi|323705364|ref|ZP_08116939.1| integrase family protein [Thermoanaerobacterium xylanolyticum LX-11] gi|323535266|gb|EGB25042.1| integrase family protein [Thermoanaerobacterium xylanolyticum LX-11] Length = 327 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 46/304 (15%), Positives = 97/304 (31%), Gaps = 44/304 (14%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK------------SGDFDYRKITTKH 118 L+ ++ Y + + N+ ++ R + D + Sbjct: 15 LEEFLN-YFSTIKAR--SPNTVKAYLYDLILFFRFIKVRKNLCSDSDFDNIDISDVDISL 71 Query: 119 IRSGV------------ESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPK 165 I S R +TP + + + S+R + + +++ + NP L +E PK Sbjct: 72 IESIDLNDLYAFLSFVTHERSNTPPARARKVASLRSFYNYLYAKRKVITKNPALELESPK 131 Query: 166 RKTEGIRPWTKEDMQQFKSFWS--EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223 T ++ + + + L GLR S+ + ++++ + Sbjct: 132 LGIRQPVYLTLDESVKLLNSIDGEFKERDYAIITLFLNCGLRLSELANINITDIKDDKLT 191 Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKA 275 K TV L D + + + + + K Q+++ K Sbjct: 192 -VIGKGNKQRTVYLNDACINAINDYLKVRPHDGVKDKKALFLSKRLQRISIKTIQYIVKK 250 Query: 276 KATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD-RIR 330 A ++ S H +R +AT+ G L G V + YT D ++R Sbjct: 251 HLKDANLDGKKYSTHKLRHTAATLMYRYGKVDIRTLQRLLGHSNVSTTQIYTHVDDSQLR 310 Query: 331 LGIK 334 + Sbjct: 311 DAVS 314 >gi|49476286|ref|YP_034327.1| integrase /recombinase xerD [Bartonella henselae str. Houston-1] gi|49239094|emb|CAF28397.1| Integrase /recombinase xerD [Bartonella henselae str. Houston-1] Length = 312 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 38/288 (13%), Positives = 89/288 (30%), Gaps = 33/288 (11%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRK 127 +I + + ++ +++ + + + + S + + Sbjct: 6 VIDHFLEMMSAERGACEHTLAAYQRDLQWAQDELFSHSVSLFSAQREDLIGLLSLMHTLG 65 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR--------------P 173 SS + L+++R +++ + A +P +++ P++ + Sbjct: 66 FAASSQARRLSTLRQFYQFLYAEGLRADDPSHNIDAPRQGRPLPKVVSENVVTKLLDLAQ 125 Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTI 232 + +L E L +GLR S+ VQ ++ +SI K Sbjct: 126 LEVNQEDYGSKGHFRALRLQLLIEMLYATGLRISELVSLPVQAVRGKDYSILVRGKGKKE 185 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ---------FSIWFKAKATKAGVN 283 V L ++L+ ++ A + K+ A +AG+ Sbjct: 186 RMVLLSKKACQVLSQWLSLRDQGKYAESLYLFPARSETGYIARQVVARDLKSLARRAGIK 245 Query: 284 ---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 S H +R A+ GA + G + + YT + Sbjct: 246 SGGFSPHVLRHAFASHLLQNGADLRAVQHLLGHSDIATTQIYTHVLEE 293 >gi|16803317|ref|NP_464802.1| hypothetical protein lmo1277 [Listeria monocytogenes EGD-e] gi|224499052|ref|ZP_03667401.1| hypothetical protein LmonF1_04845 [Listeria monocytogenes Finland 1988] gi|224501778|ref|ZP_03670085.1| hypothetical protein LmonFR_04567 [Listeria monocytogenes FSL R2-561] gi|254829966|ref|ZP_05234621.1| hypothetical protein Lmon1_01355 [Listeria monocytogenes 10403S] gi|255016911|ref|ZP_05289037.1| hypothetical protein LmonF_02001 [Listeria monocytogenes FSL F2-515] gi|284801662|ref|YP_003413527.1| hypothetical protein LM5578_1415 [Listeria monocytogenes 08-5578] gi|284994804|ref|YP_003416572.1| hypothetical protein LM5923_1368 [Listeria monocytogenes 08-5923] gi|34222941|sp|Q8Y7K0|XERC_LISMO RecName: Full=Tyrosine recombinase xerC gi|16410693|emb|CAC99355.1| codV [Listeria monocytogenes EGD-e] gi|284057224|gb|ADB68165.1| hypothetical protein LM5578_1415 [Listeria monocytogenes 08-5578] gi|284060271|gb|ADB71210.1| hypothetical protein LM5923_1368 [Listeria monocytogenes 08-5923] Length = 300 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 36/274 (13%), Positives = 87/274 (31%), Gaps = 27/274 (9%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHIRSGVESRKHTP 130 +Y S + +VN+ ++E+ R + + + + ++ + + Sbjct: 13 DYLHSE--RNYSVNTSTAYENDLLDFRRFLNEQAITTYQQVTFLDVRIYLTELKQKSFSR 70 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG- 189 ++ + ++S+R + + +R+ + NP V K + + + E+M+ E Sbjct: 71 TTVARKISSLRSFYTFLLRENVINENPFTYVSHAKNQLRLPKFFYSEEMEALFQVVYEDN 130 Query: 190 ----SQPRLAFEFLLYSGLRCSDSCRAG-VQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 + R+ E L +G+R S+ + + K V Sbjct: 131 ETLTLRDRVLLEVLYGTGIRVSECAGILLPDLDTSYQAILIRGKGNKERYVPFGAYAEDA 190 Query: 245 LAMTPIGKETFF-----------INNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRK 291 + + +N+ + +KA + H +R Sbjct: 191 ITDYLPERVNLMSRYKKSHDALLVNHYGDPLTTRGIRYCLTKIISKASLTRKIHPHMLRH 250 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKG 325 AT + GA + G ++ + YT Sbjct: 251 TFATDLLNNGADMRTVQELLGHASLSSTQIYTHV 284 >gi|288553931|ref|YP_003425866.1| site-specific integrase [Bacillus pseudofirmus OF4] gi|288545091|gb|ADC48974.1| site-specific integrase [Bacillus pseudofirmus OF4] Length = 348 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 49/295 (16%), Positives = 88/295 (29%), Gaps = 39/295 (13%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESR 126 L L +Y S A + S+ + + D R I T +R V Sbjct: 25 LDALFEKYYDSKVAEGRAEGTLKSYRRVYGVFSEYLTNNDVQLDIRAIETDTVRGFVAWL 84 Query: 127 --------------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 +P S + +++ F + V ++ NP V++ ++ Sbjct: 85 LRERIRWDGHKHKPEYVQTKGLSPRSVNDHIKTLKTFFSFLVDEDLADFNPVSKVKKVRQ 144 Query: 167 KTEGIRPWTKED----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222 + I T ++ M + + FLL + R ++ C + + Sbjct: 145 IEKEIDVLTVDELKALMSVPYHRKYADFRDYVIMTFLLDTMCRINEVCTLRKRDIDFKDN 204 Query: 223 SIKTQ----KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN-----ATQFSIWF 273 ++ + KT V +LL + F F Sbjct: 205 TVHIRAEITKTRKGRHVPFQKRTARLLKELIKEVDVFDSEYIFLSNYGEQLEPNHFRSRL 264 Query: 274 KAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 K A KAG+ + H R AT+ +AG L G + YT + Sbjct: 265 KGFAKKAGIERNVHPHLFRHTGATMFLEAGGDIRHLQLILGHADLRMTTRYTHVS 319 >gi|269122520|ref|YP_003310697.1| integrase family protein [Sebaldella termitidis ATCC 33386] gi|268616398|gb|ACZ10766.1| integrase family protein [Sebaldella termitidis ATCC 33386] Length = 344 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 42/322 (13%), Positives = 104/322 (32%), Gaps = 16/322 (4%) Query: 26 RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85 G+RI + T A+ + + T L ++ + H+ Sbjct: 29 WTDEGKRIYKYLSYHIT----RKEAMQALASYNANPYNVDESNITFGELYEKW-STRHYK 83 Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFK 145 +L+ N+ +E + + D + I H+++ ++ + ++ +F Sbjct: 84 NLSKNTIKGYE-TCSKYCKPIFDMKIKDIKIVHLQNLIDGLNKNHGTLKMMKNILKQIFG 142 Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205 +A+ + + + ++ K T + + + Q ++Y+G+R Sbjct: 143 YAMELDIIQKDYSRFLKIGKHVTIKQKSIFNDKEIAVLWKNLDKYQYIDTILIMIYTGMR 202 Query: 206 CSDSCRAGVQHLQNNIFSIKTQKTGTI----ITVELPDGFMKLLAMTPIGKETFFINNDK 261 + + + +I + + T + + +L+ + + Sbjct: 203 VGEMLNLRKEDINLIEQTIIVRTSKTEAGTNRIIPIHPRIKELIQNRYKNSNSDHLITGL 262 Query: 262 QKMNATQFSIW----FKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317 Q N+ + + F + + + H R AT DAG A + G ++ Sbjct: 263 QNRNSISYVYYDIRLFNPIMDELNIKHTPHDCRHTFATRLNDAGGNATAIKKMIGHESFA 322 Query: 318 QAE-TYTK-GADRIRLGIKNSR 337 E YT +R I+ Sbjct: 323 LTEKVYTHKKVSELRKAIELVN 344 >gi|259906886|ref|YP_002647242.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96] gi|224962508|emb|CAX53963.1| Tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96] gi|283476679|emb|CAY72508.1| Tyrosine recombinase xerC [Erwinia pyrifoliae DSM 12163] gi|310766134|gb|ADP11084.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617] Length = 302 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 38/278 (13%), Positives = 84/278 (30%), Gaps = 21/278 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---- 129 + + + L+ ++I + II + + + Sbjct: 11 VEGFLRFLKVERQLSPLTQIGYRRQLSAIIVLLDELKVVEWARLDAALVRALAARSTRSG 70 Query: 130 --PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 P+S L+++R W V Q + NP V P+ + +++ + Sbjct: 71 LKPASLALRLSALRSFLDWLVSQGAIKANPAKGVATPRAARHLPKNIDVDEVNRLLDIDL 130 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243 + R E + +GLR S+ + HL + K + + + Sbjct: 131 NDPLAVRDRAMLEVMYGAGLRLSELVGIDLGHLDLASGEVWVVGKGSKERRLPMGRTAVH 190 Query: 244 LLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 + +E F ++ ++++ F K G+ + H +R A Sbjct: 191 WIENWLEMRELFEPQDNALFLSNKGKRISTRNVQKRFAEWGVKQGMSSHIHPHKLRHSFA 250 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 T ++ + G + + YT D L Sbjct: 251 THLLESSGDLRAVQELLGHANLTTTQIYTH-LDFQHLA 287 >gi|254476067|ref|ZP_05089453.1| phage integrase family protein [Ruegeria sp. R11] gi|214030310|gb|EEB71145.1| phage integrase family protein [Ruegeria sp. R11] Length = 335 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 65/337 (19%), Positives = 107/337 (31%), Gaps = 19/337 (5%) Query: 12 TKERTRHGKIIYYFRKGHGRRIRL-PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 K RH YFRK +R+ + F Y +TG T+ Sbjct: 6 KKYLWRHPSGRIYFRKTGMSLVRIHAAEGTADFDREYWDIMTGKKW---------AAKTS 56 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 LI +YR+S W L +R +E I K G+ D R T + ++ H Sbjct: 57 FAALILDYRESDRWTGLKPRTRSDYEKVLSYIEEKIGNRDVRAFTRPDAIAAQKANAHRT 116 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQFKSFWSEG 189 A + + VL + A+ +V NP V+ K + D Sbjct: 117 RFANYIVQILVVLMEHAIDIGWVKENPAKGVKALKTPEHKKKQHLPWPDWAVDLFREKVT 176 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA--- 246 Q RL FE + + R D +++ KT + + + L Sbjct: 177 GQARLIFEIGVGTVQRPGDWIAFCWGDYDGENLALRQNKTDKPLILPCTRQLKEALDLQR 236 Query: 247 ----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAG 301 PI + +M+ + + + G+ H +R A AG Sbjct: 237 AGLGTIPIAAHPILMTQGGGRMSYRYMAQIMLKERKRLGLEAYDLHALRYRGVMELAWAG 296 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338 E+ + G T + Y A +I + S + Sbjct: 297 CDDDEIASYSGHATKEMIAKYAGEARQIMRARQASEK 333 >gi|304316827|ref|YP_003851972.1| integrase [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778329|gb|ADL68888.1| integrase family protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 327 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 48/316 (15%), Positives = 101/316 (31%), Gaps = 45/316 (14%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK------------SGDFDYRKITTKH 118 L+ ++ Y + + N+ ++E R D + Sbjct: 15 LEEFLN-YFSTIKAR--SPNTVKAYEYDLVLFFRFIKVRKNLSSDSDFDQIDISDVDISL 71 Query: 119 IRSGV------------ESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPK 165 I S R +TP + + + S+R + + +++ + NP L +E PK Sbjct: 72 IESIDLNDLYAYLSFVTHERSNTPPARARKVASLRSFYNYLYAKRKVITKNPALELESPK 131 Query: 166 RKTEGIRPWTKEDMQQFKSFW--SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223 T ++ + + L GLR S+ + ++++ + Sbjct: 132 LGIRQPVYLTLDESMKLLDSIDGPFKERDYAIITLFLNCGLRLSELANINISDIKDDKLT 191 Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKA 275 K TV L D + + + + + K Q+++ K Sbjct: 192 -VIGKGNKQRTVYLNDACISAINEYLKVRPHDGVKDKKALFLSKRLQRISIKTIQYIVKK 250 Query: 276 KATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD-RIR 330 A ++ S H +R +AT+ G L G V + YT D ++R Sbjct: 251 HLKDANLDGKKYSTHKLRHTAATLMYRYGKVDIRTLQRLLGHSNVSTTQIYTHVDDSQLR 310 Query: 331 LGIKNSRRISSVVDSD 346 + +S + ++ Sbjct: 311 DAVSK-NPLSELNSNN 325 >gi|260062369|ref|YP_003195449.1| tyrosine type site-specific recombinase [Robiginitalea biformata HTCC2501] gi|88783932|gb|EAR15103.1| tyrosine type site-specific recombinase [Robiginitalea biformata HTCC2501] Length = 386 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 45/294 (15%), Positives = 94/294 (31%), Gaps = 20/294 (6%) Query: 52 TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY 111 G K + PT L+ YR+ + ++ S+ + Q + G+ Sbjct: 72 QGEVEKFRERLAREANPT----LLDTYRQFLRGRRYSESTIASYGTMAAQFLEFLGEKPP 127 Query: 112 RKITT----KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167 K ++ V RK + S+ Q +++++ L + + P++ Sbjct: 128 EKADQTDAEAFLQWLVLERKVSVSTHRQAISALKQLEAFLPA----CHLEAKGLVSPRKD 183 Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--IK 225 + + + + R L GLR + + + ++ Sbjct: 184 RKLPGVL-GKAEVMRLLQQTRNLKHRTLTALLYGCGLRVGELINLQLAEVDIPRRQLLVR 242 Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK---MNATQFSIWFKAKATKAGV 282 K V LP+ + LL + + +AT + KA + +AG+ Sbjct: 243 AGKGRKDRRVVLPERLLPLLGDYLTAYAPSRYLAEGRPGQQYSATSIRAFLKANSRRAGI 302 Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334 + H +R AT + G + G + YT + + L I+ Sbjct: 303 LKKVTPHMLRHSYATHLLEQGVDIRYIQELLGHARPETTMVYTHVSRQDLLDIQ 356 >gi|170693977|ref|ZP_02885133.1| tyrosine recombinase XerC [Burkholderia graminis C4D1M] gi|170141049|gb|EDT09221.1| tyrosine recombinase XerC [Burkholderia graminis C4D1M] Length = 307 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 43/294 (14%), Positives = 89/294 (30%), Gaps = 31/294 (10%) Query: 69 TTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127 T I+ Y + L+ ++ + +Q+ + +T +R V Sbjct: 1 MTETDFIAAYLSNLEHERRLSAHTLRGYTHELEQLRLLAKGRPLESLTAVDVRGAVSRAH 60 Query: 128 HTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 +A L++ R ++W + + NP +V PK+ + + +D + Sbjct: 61 AGGLTARSISHRLSAWRAFYRWLAGRIDLPANPVATVRAPKQPKALPKALSVDDANRLME 120 Query: 185 ----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ------------K 228 +EG + E SGLR S+ + + + K Sbjct: 121 SPPAASAEGLRDHAMLELFYSSGLRLSELVGLDARFADADGYRSAGWLKLDSAEVEVLGK 180 Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKA 280 V + + L ++ ++ +++ K A A Sbjct: 181 GKRRRIVPVGSKALTALNAWLAVRDQMVKHDPHPLFLSARGNRLSPNVVRERVKRAALLA 240 Query: 281 GVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 G+ H +R AT + + G ++ + YT G D L Sbjct: 241 GIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYT-GLDFQHLA 293 >gi|113461442|ref|YP_719511.1| site-specific tyrosine recombinase XerC [Haemophilus somnus 129PT] gi|112823485|gb|ABI25574.1| tyrosine recombinase XerC subunit [Haemophilus somnus 129PT] Length = 291 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 37/278 (13%), Positives = 94/278 (33%), Gaps = 21/278 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESRKHTP 130 + +Y L+ + I+++ ++I ++++ ++++T +R + + Sbjct: 1 MQKYYNYLRIERQLSPYTLINYQRQLEKIVVILQQNDIQSWQQVTPSVVRFVLAQSRKEG 60 Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ---FKS 184 S L+++R + V Q + +N + + PK+ + E +QQ +S Sbjct: 61 LHERSLALRLSALRQFLNYLVVQGELKVNSAVGISAPKQSKYLPKNMDMEQVQQLLTNES 120 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243 + + E + SGLR S+ + + ++ + + Sbjct: 121 KEPIDLRDKAMMELMYSSGLRLSELQSLNLNSINIRSREVRVIGKGNKERILPFGRYASQ 180 Query: 244 LLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSA 294 + E F++ +++ + + G+N H +R A Sbjct: 181 AIQQWLKVRLLFNPKDEALFVSQLGNRISHRSIQKRMETWGIRQGLNGHLNPHKLRHSFA 240 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 T + + + G + + YT D L Sbjct: 241 THMLENSSDLRAVQELLGHSNLSTTQIYTH-LDFQHLA 277 >gi|115522315|ref|YP_779226.1| site-specific tyrosine recombinase XerC [Rhodopseudomonas palustris BisA53] gi|115516262|gb|ABJ04246.1| tyrosine recombinase XerC subunit [Rhodopseudomonas palustris BisA53] Length = 342 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 37/290 (12%), Positives = 79/290 (27%), Gaps = 34/290 (11%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQI----IRKSGDF----DYRKITTKHIRSGVES 125 I + L+ + ++ Q G + K+ +R+ + S Sbjct: 43 IVRWLGHLRAERRLSPKTLEAYARDLRQFLGFLCEHWGTQVSVARFAKLEAGDVRAFMAS 102 Query: 126 RK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW-------- 174 R+ S ++ L +R ++ R+ + ++ PK +P Sbjct: 103 RRADAIGGRSLMRALAGLRSFGRFLEREGKGKVGALSAIRAPKVGKTLPKPIQIASAKRL 162 Query: 175 -TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233 ++ + + L SGLR S++ + + TG Sbjct: 163 TDPDERAGEERENWILVRDAAVMALLYGSGLRISEALGLKRRDVPLPGQGDTLIVTGKGN 222 Query: 234 TVELPDGFMKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVN 283 + +L ++ + + G+ Sbjct: 223 KTRMVPVLQSVLQSVADYVAICPHPLAADRAIFVGARGGPLSPRIIQLTMERMRGALGLP 282 Query: 284 --KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 + H +R AT G + G ++ + YT G D RL Sbjct: 283 DSATPHALRHSFATHLLSRGGELRAIQELLGHASLSTTQIYT-GIDSERL 331 >gi|322509106|gb|ADX04560.1| xerC [Acinetobacter baumannii 1656-2] gi|323519136|gb|ADX93517.1| site-specific recombinase XerC [Acinetobacter baumannii TCDC-AB0715] Length = 295 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 43/274 (15%), Positives = 87/274 (31%), Gaps = 27/274 (9%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRK--SGDFDYRKITTKHIRSGVESR----KHTPS 131 + K + + ++ ++E + D R + +R + R + + S Sbjct: 2 WLKERKIQNQSEHTITAYERDVKSFLEFCELKKVDLRNVEASDLREYLAQRVEQDQLSSS 61 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-- 189 S + LTS+R KWA + +Y+ INP + ++ E + Q Sbjct: 62 SMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILDQPMPEKP 121 Query: 190 ------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 + + E L SGLR ++ ++ + N ++ V Sbjct: 122 VDQQLWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKGNKTRIVPFGKKAK 181 Query: 243 KLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAGV--NKSAHGVR 290 + L + + D+ Q K +A +AGV + H +R Sbjct: 182 ESLLNWLKIYNIWKGHFDQNASVFISQRGGALTPRQIEKRVKLQAQRAGVNVDLHPHLLR 241 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324 A+ + + G + + YT Sbjct: 242 HCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTH 275 >gi|171915713|ref|ZP_02931183.1| hypothetical protein VspiD_31120 [Verrucomicrobium spinosum DSM 4136] Length = 297 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 51/289 (17%), Positives = 97/289 (33%), Gaps = 27/289 (9%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVESRKHT 129 I + L+VN ++ + D +TT+HI + RK Sbjct: 5 IDAFLLHLATERGLSVNYQLLVRRVLETFASWLHREHDSDDIADVTTQHISGFLGHRKGD 64 Query: 130 ---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-- 184 PSS L ++++ F+W + +P V P+ + + ++++ Sbjct: 65 GLIPSSLRVELVALKIFFRWLAARGRRLGDPAEPVLPPRVEQSLPDTLNEPEVRRLLESV 124 Query: 185 --FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 + R E SGLR S+ A V++L ++ V + Sbjct: 125 TGQEPLDLRDRAILEIFYASGLRISEVTGARVENLSLEEGWVRVTGKGNKTRLVPVGGAA 184 Query: 242 MKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHG 288 ++ P K F+N + ++ + K +A AG++ H Sbjct: 185 RDAISRYLDSARPQLVKPKTKSFIFLNRNGGQLTTARVWQIVKERAAAAGMDADRIYPHL 244 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 +R AT GA + G + + YT D+ RL + + Sbjct: 245 LRHSFATHLLGNGADLRVIQEMLGHADIATTQIYTH-VDQKRLKDTHRK 292 >gi|108760213|ref|YP_631219.1| phage integrase family site specific recombinase [Myxococcus xanthus DK 1622] gi|34222772|sp|P59818|XERC_MYXXA RecName: Full=Tyrosine recombinase xerC gi|122981099|sp|Q1D804|XERC_MYXXD RecName: Full=Tyrosine recombinase xerC gi|27804888|gb|AAO22922.1| integrase/recombinase [Myxococcus xanthus] gi|108464093|gb|ABF89278.1| site-specific recombinase, phage integrase family [Myxococcus xanthus DK 1622] Length = 300 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 51/306 (16%), Positives = 99/306 (32%), Gaps = 35/306 (11%) Query: 69 TTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS-GDFDYRKI--TTKHIRSGVE 124 T+L L+ ++R + ++ ++ R + T IR + Sbjct: 2 TSLSPLLEKFRAHLEDEKGSSPHTVRNYLIDLVDFERYLVERMKLSLLSGTHAAIRGYLG 61 Query: 125 SRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + H P+S + L S++ +K+ VRQ+ + +P V+ PK + E++ Sbjct: 62 TLSTDHAPASRARRLASIKSFYKYLVRQKLLPASPAKLVKSPKLPKTLPKVLPVEEVFAI 121 Query: 183 KSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVEL 237 G + R E L GLR S+ C + + + ++ V + Sbjct: 122 LDMPDVKTVLGLRDRAILELLYGGGLRISELCGLDLLDIDRSGRIVRVMGKGSKERLVPV 181 Query: 238 PDGFMKLLAMT-------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-- 282 ++ L E F+N ++ + K + Sbjct: 182 NAQSIRALEAYLARRGELLATIRKDQAPEAMFLNFRGGRLTPRSIARHLDTYVLKCALTR 241 Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342 S H +R AT GA + G ++ + YT+ ++ V Sbjct: 242 KVSPHAMRHSFATHLLGGGADIRSIQELLGHSSLSTTQRYTQVT---------WEQLQQV 292 Query: 343 VDSDDP 348 DS P Sbjct: 293 YDSAHP 298 >gi|150388670|ref|YP_001318719.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF] gi|149948532|gb|ABR47060.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF] Length = 382 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 48/351 (13%), Positives = 103/351 (29%), Gaps = 41/351 (11%) Query: 15 RTRHGKIIYYFRKG--HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 R R Y G G R + A+ + + Sbjct: 6 RKRGNTWSYRIDLGIVDGSRKQKETGGFKKKSEAHSALRKAIDELENTGGVFEPTTISFS 65 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR--KHT 129 ++ + ++ L NS+ + + I G++ +IT++ +++ + + ++ Sbjct: 66 DYLNYFIENYIEIHLRENSQRARQHIIKNHIRPAFGNYKIMQITSQALQNFITKKSKAYS 125 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE- 188 + ++ FK AV E++ INP V+ PKR + + K + + +E Sbjct: 126 KNYISMIHATLSTAFKMAVEWEFIRINPMTRVKVPKRDDQEMDKEIKTLSPEEVNRCAER 185 Query: 189 --GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--------------IKTQKTGTI 232 G+ + F ++GLR + + + K Sbjct: 186 LQGTHHYIPFMIAFHTGLRAGEVSALQWSDIDFDNQMLSVTKRLDYSASKENWEFKPPKT 245 Query: 233 ITVELPDGFMKLLAMT---PIGKETFFINNDKQKMNATQFSIWFKA-------------- 275 + L + + F F+ Sbjct: 246 RSSNRTIAIGNELITILKSHSINQKKNKLKYGKHYTENDFICTFENGEVVITKAIGRVSE 305 Query: 276 -KATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK 324 ++ + H +R AT+ +AG + G TV +TY+ Sbjct: 306 IIIRDVKIDFNFHMLRHTHATMLLEAGINPKVVQERLGHSTVSITLDTYSH 356 >gi|315646363|ref|ZP_07899481.1| integrase family protein [Paenibacillus vortex V453] gi|315278006|gb|EFU41326.1| integrase family protein [Paenibacillus vortex V453] Length = 294 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 41/275 (14%), Positives = 91/275 (33%), Gaps = 24/275 (8%) Query: 72 KWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYR---KITTKHIRSGVESRK 127 K + EY L+ ++ S+ + + I + D + + + + + Sbjct: 2 KQYLDEYVTYLEEVKRLSRSTIESYRADLNGFIEYAADREVTHPQDVNRTVLGLYLGRLR 61 Query: 128 HTPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 +A L +R F++ VRQ + +P ++RPK + + + T E + + S Sbjct: 62 QQGKAASSQLRCTASLRSFFQYLVRQSVIGQDPTQLLDRPKPERKPPQAVTIEQVDKLLS 121 Query: 185 FWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239 + + R E L SG++ S+ + L + ++ G + + Sbjct: 122 APDSDTPQGARDRAMLELLYASGIKVSELVSLSIHDLNMEMRFLRCAVPGGKERILPISQ 181 Query: 240 GFMKLLAMTPIGKETFFINNDK----------QKMNATQFSIWFKAKATKAGVN--KSAH 287 + +A + I + + ++ F K A ++ + H Sbjct: 182 IAAQSVAYYMRDMRSQLIRDAEEEALFLNSLGTRLTRQGFWKIIKKYGKLAEIDEEITPH 241 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 +R A GA + G + Y Sbjct: 242 TLRHSFAIHLLQNGADLRSVQEMLGHSALSTTGMY 276 >gi|254492199|ref|ZP_05105373.1| tyrosine recombinase XerC [Methylophaga thiooxidans DMS010] gi|224462524|gb|EEF78799.1| tyrosine recombinase XerC [Methylophaga thiooxydans DMS010] Length = 302 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 38/277 (13%), Positives = 82/277 (29%), Gaps = 24/277 (8%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRKHTP--- 130 +Y L+ ++ ++ Q+I + + +R + Sbjct: 14 DYLA--QQRRLSHHTVNNYRRDLTQLIDFCQGQELSHWHSVKPADLRQFIAFLHRKGLAS 71 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 + + L++ R L+++ +RQ NP +V+ PK + + M + Sbjct: 72 RTIQRMLSATRSLYQYLIRQGLAETNPAQAVQAPKAEKRLPSTLDVDQMNALLDQTQADT 131 Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLL 245 + R E SGLR ++ ++ + T K + +K L Sbjct: 132 FVACRDRAIMELFYSSGLRLAELATLDLRDIDFGDQLVHVTGKGNKDRVCPVGAVAIKAL 191 Query: 246 AMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSAT 295 + FI +++ K G+ H +R A+ Sbjct: 192 QDWLEKRDQTGFFDQPAVFITQQGRRLGMRSIQKRLSFWGKKQGISDRVHPHRLRHAFAS 251 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 ++ + G + + YT D L Sbjct: 252 HMLESSGDLRAVQELLGHSDISTTQIYTH-VDFQHLA 287 >gi|270308830|ref|YP_003330888.1| site-specific recombinase, phage integrase family [Dehalococcoides sp. VS] gi|270154722|gb|ACZ62560.1| site-specific recombinase, phage integrase family [Dehalococcoides sp. VS] Length = 385 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 48/364 (13%), Positives = 105/364 (28%), Gaps = 50/364 (13%) Query: 12 TKERTRHGKI---IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 ++ +G +Y R + + L ++ + + Sbjct: 4 HIKKRANGTWSIVVYMGRDPKTGKKIYQWQTVKGTKSHAEKELAALINRKNNGSFVKPTK 63 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK 127 TT+ + + ++ + A + + + G + ++ +HI++ Sbjct: 64 TTVGTFLESWLETYASCNTAPRTFERYSQIVRLHLTPNLGRIELTQLRPEHIQAYYSKAL 123 Query: 128 HTPS---------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-----RKTEGIRP 173 + + AV+ +A N ++V+ P+ T Sbjct: 124 SGGRVSGGGLSAQTVKHHHRVLSEALNHAVKWGLLARNVAMAVDPPRPEKREMHTIAPED 183 Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL---------------- 217 + + K + G L F L++G+R + + Sbjct: 184 MSVLFEEAAKMEKNSGLPYELIFMTALHTGMRRGEILALRWSDIDLAKSKIYVRCSLQCL 243 Query: 218 -QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI--------------NNDKQ 262 I + + G+ V + ++ L + I + D Sbjct: 244 KNGEIIIREPKTPGSRRLVSMTPSLLEKLIIHKESSSANMILQGKTLQGDSLVFAHFDGT 303 Query: 263 KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAET 321 +N S F A +AG+N H +R AT+ AG + G TV +T Sbjct: 304 PINPNTVSPAFAKIAKRAGLNLRLHDLRHSHATLMLTAGVHPKIVSERLGHSTVAFTLDT 363 Query: 322 YTKG 325 Y+ Sbjct: 364 YSHV 367 >gi|188994249|ref|YP_001928501.1| putative integrase/recombinase XerD [Porphyromonas gingivalis ATCC 33277] gi|188593929|dbj|BAG32904.1| putative integrase/recombinase XerD [Porphyromonas gingivalis ATCC 33277] Length = 308 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 48/270 (17%), Positives = 99/270 (36%), Gaps = 23/270 (8%) Query: 87 LAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMR 141 L NS ++ ++ + +R+++ ++++ V + S + ++ ++ Sbjct: 20 LTPNSVDAYLKDLSKLDSYLTAENISFREVSYENLQHFVAELYDLGISARSIARIISGVK 79 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG----SQPRLAFE 197 F++ V +EY+ +P +E P+ T E++ + + R E Sbjct: 80 SFFRFLVLEEYIEADPTELLEGPRIGVHLPTVLTIEEVDRLIGAIDPAAQGAQRNRAILE 139 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPI------ 250 L GLR S+ +L N ++ V + + + L Sbjct: 140 ILYSCGLRVSELTSLKFSNLFLNESFLRIDGKGRKQRLVPMSETAITELKRYLSDPERPT 199 Query: 251 ----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATA 304 +E F++N + ++ + K A +AG+ KS H R AT + GA Sbjct: 200 PVLGQEEYVFLSNRGKAISRIMVFVMIKKLAEEAGITKSISPHTFRHSFATHLLEGGANL 259 Query: 305 HELMATYGWKTVDQAETYTKGADRIRLGIK 334 + G + + E YT DR L + Sbjct: 260 QAIQLMLGHENIATTEIYTH-IDRETLRHE 288 >gi|222149986|ref|YP_002550943.1| site-specific tyrosine recombinase XerD [Agrobacterium vitis S4] gi|221736968|gb|ACM37931.1| tyrosine recombinase XerD [Agrobacterium vitis S4] Length = 332 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 43/324 (13%), Positives = 98/324 (30%), Gaps = 51/324 (15%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKI--TTKHIRSGVESRKHTP- 130 I + + A N+ S+E + + + T+ + + + H Sbjct: 9 IEAFLEMMSAERGAAGNTLSSYERDLEDLHGFLATRKVSVMAATSDDLSAYLADLGHRGF 68 Query: 131 --SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----- 183 SS + L+++R +K+ + +P ++ PK+ + + D+ + Sbjct: 69 EASSQARRLSALRQFYKFLYAEGLRGDDPTSILDTPKKGRPLPKTLSIADVDKLLSLAQA 128 Query: 184 ------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236 + + E L +G+R S+ L + + V Sbjct: 129 EAALDGPDRLQRLRRLALLELLYATGMRVSELVSLPANVLAQEGRFLVIRGKGNKERLVP 188 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMN-----------------------------AT 267 L + + + KE K Sbjct: 189 LSRSAIAAMQVYAQAKEIEQAEKPPSKKTASKQTESKLGKSSGIGFLFPAASREGYLPRQ 248 Query: 268 QFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 F+ K A +AG++ S H +R A+ + GA + G + + YT Sbjct: 249 VFARELKDLAIRAGLSGDAVSPHVLRHAFASHLLENGADLRVVQELLGHSDISTTQIYTH 308 Query: 325 GA-DRIRLGIKNSRRISSVVDSDD 347 +R+++ ++ ++ + D Sbjct: 309 VLEERLQILVETHHPLAKHRKNHD 332 >gi|221201912|ref|ZP_03574949.1| tyrosine recombinase XerC [Burkholderia multivorans CGD2M] gi|221207582|ref|ZP_03580590.1| tyrosine recombinase XerC [Burkholderia multivorans CGD2] gi|221215807|ref|ZP_03588766.1| tyrosine recombinase XerC [Burkholderia multivorans CGD1] gi|221164343|gb|EED96830.1| tyrosine recombinase XerC [Burkholderia multivorans CGD1] gi|221172428|gb|EEE04867.1| tyrosine recombinase XerC [Burkholderia multivorans CGD2] gi|221178332|gb|EEE10742.1| tyrosine recombinase XerC [Burkholderia multivorans CGD2M] Length = 306 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 45/288 (15%), Positives = 90/288 (31%), Gaps = 31/288 (10%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTP 130 I+ Y + L+ ++ ++ D++ + + + IR + + + Sbjct: 6 IAAYLSNLKHVRQLSEHTLRAYTHELDELKKLAAGRPLDTLVAADIRGAVARAHAGGLSA 65 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFW 186 S L++ R ++W ++ + NP +V PKR + + +D M + Sbjct: 66 RSISHRLSAWRAFYRWLAQRVEMPANPVAAVRAPKRPKTLPKALSVDDASALMDAPLADT 125 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------GTIIT 234 +EG + E SGLR ++ V + Q + Sbjct: 126 TEGIRDHAILELFYSSGLRLAELIGLDVAYTQTGDYRSAGWLDLAEAEVTVRGKGNKERK 185 Query: 235 VELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--K 284 V + + L F++ +M+ K A AG+ Sbjct: 186 VPVGRKAIDALNAWLAVRGEFVKHDPHPLFLSVRGNRMSPGVVRERVKRAALAAGIPAHV 245 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R AT + + G +V + YT D L Sbjct: 246 HPHVLRHSFATHVLQSSGDLRAVQELLGHASVSATQVYT-SLDFQHLA 292 >gi|242237692|ref|YP_002985873.1| site-specific tyrosine recombinase XerC [Dickeya dadantii Ech703] gi|242129749|gb|ACS84051.1| tyrosine recombinase XerC [Dickeya dadantii Ech703] Length = 302 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 40/278 (14%), Positives = 93/278 (33%), Gaps = 21/278 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIR---SGVESRK 127 ++ + + L+ + S++ I G D+R++ +R + + Sbjct: 11 VNAFLRYLRVERRLSPLTLRSYQHQLQVIASTLEESGISDWRRLDAAGVRSLAARGKRDG 70 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + +S Q L+++R W V + ++ NP V PK + ++ + + Sbjct: 71 LSAASLAQRLSALRSFLDWLVSRGELSANPARGVSAPKAGRHLPKNMDVDETDRLLAIDL 130 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243 + R E + +GLR ++ +HL + K + + + Sbjct: 131 NDPLAVRDRAMLEVMYGAGLRLAELVGLDCRHLDLADGEIWVLGKGSKERRLPIGATAVA 190 Query: 244 LLAMTPIGKETFFINN-------DKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 L +E + ++ ++++ F K G+ + H +R A Sbjct: 191 WLRRWLDVREIYAPDDDAVFVSSRGKRISMRNVQKRFAEWGVKQGISSHVHPHKLRHSFA 250 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 T ++ + G + + YT D L Sbjct: 251 THMLESSGDLRAVQELLGHANLSTTQIYTH-LDFQHLA 287 >gi|198275042|ref|ZP_03207574.1| hypothetical protein BACPLE_01201 [Bacteroides plebeius DSM 17135] gi|198272489|gb|EDY96758.1| hypothetical protein BACPLE_01201 [Bacteroides plebeius DSM 17135] Length = 372 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 48/318 (15%), Positives = 94/318 (29%), Gaps = 30/318 (9%) Query: 28 GHGRRIRLPYPHESTFIPAYMS-------ALTGSTPKREYINSPRKKPTTLKWLISEYRK 80 G + + F Y+ A+ + P++E P Y + Sbjct: 47 GGRAYLPAEDFVLAEFFDRYVKMAFIDYSAIKETAPRKEEDKRPPLPEG--------YLE 98 Query: 81 SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQF 136 + ++ + SYF + +T I + + + Q Sbjct: 99 KLQQVRYSDHTVRVYTSYFRDFQQHFEGRKIETVTPGEINDYLLYLIHEKNISSCQQNQR 158 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196 + +++ + + C V R KR+ +KE++++ + F Sbjct: 159 INAIK----FYYEKVLGQERRCYKVNRAKREKTLPDVLSKEEIKKILDATVTDLRFFCMF 214 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254 L +GLR S+ + + ++ K L MK L + Sbjct: 215 SILYSAGLRISELLELKPGDINESRSLIRVRQGKGKKDRYTLLSKPLMKKLTEYNRLYKP 274 Query: 255 FFINNDKQK---MNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMA 309 + + + S KA A +AG+ K H +R A + G + Sbjct: 275 KVWLFEHRPGEPFTESIVSKRLKAAAREAGITKRIYPHLLRHSFAPHLLEQGTDIKIVKE 334 Query: 310 TYGWKTVDQAETYTKGAD 327 G + E Y AD Sbjct: 335 LMGHNNIKTTERYVHIAD 352 >gi|305664395|ref|YP_003860682.1| putative site-specific recombinase [Maribacter sp. HTCC2170] gi|88708412|gb|EAR00648.1| putative site-specific recombinase [Maribacter sp. HTCC2170] Length = 297 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 45/282 (15%), Positives = 95/282 (33%), Gaps = 30/282 (10%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVESRKHTP---SSAIQFL 137 + + ++ ++E I + IR+ + + +T S + + Sbjct: 14 KNYSKHTVNAYEKDIQSFIDFCDKELKLESINNVEYNIIRNWIVTLVNTGISNRSVNRKI 73 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-----SFWSEGSQP 192 S++ +K+ R + INP + K + P+++E+MQ+ EGS+ Sbjct: 74 ASLKAYYKFLQRVGSININPLAKHKALKTSKKIEVPFSEEEMQRILLQLPFEDDFEGSRD 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIIT-------------VELP 238 +L E L +G+R S+ + N K Sbjct: 134 KLIIELLYTTGIRRSELINLRTNSVDLNQRSMKVLGKRNKERIVPLLLPTIDLFEAYFRY 193 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISA 298 ++ + T N + + +F ++K V +S H +R AT Sbjct: 194 RKELENITHDEYIFLTISGNKIYETLVYRIIKGYFSKVSSK--VKRSPHILRHTFATHLL 251 Query: 299 DAGATAHELMATYGWKTVDQAETYTK--GADRIRLGIKNSRR 338 + GA + + G ++ + YT A+ ++ R Sbjct: 252 NKGADLNSVKELLGHSSLASTQVYTHNSIAELKKVHSSAHPR 293 >gi|307251104|ref|ZP_07533028.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306856934|gb|EFM89066.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 336 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 40/292 (13%), Positives = 92/292 (31%), Gaps = 24/292 (8%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI------TTKHIRSGVESRKHTP 130 +Y + + ++ +++ + T + I + + Sbjct: 47 DYLRIEKQA--SQHTLSNYQRQLLAVSDMLSQAGISTWQEVNSATVRWIIAQSNKQGLGA 104 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWS 187 S L ++R F + +RQE +++NP + ++ PK + E +Q + Sbjct: 105 KSIALRLVALRQWFSYLIRQEKMSVNPAVGIKAPKASKRLPKNIDAEQAKQLLTSDSHEP 164 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA 246 + E + SGLR S+ + + ++ K V + ++ L Sbjct: 165 SDLRDLAMMELMYSSGLRLSELQGLDLGDMDLAGREVRLLGKGNKERIVPIGSKALEALN 224 Query: 247 MTPIGKETFFINNDKQ-------KMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297 + F ++ +++ + + K G+ + H +R AT Sbjct: 225 RWLAVRNQFKPQDNAVFLNKRGGRLSHRSIQLVMQKWGEKQGLESHLHPHKLRHSFATHM 284 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLG--IKNSRRISSVVDSDD 347 +A + G + + YT D L + + DD Sbjct: 285 LEASGDLRAIQELLGHSNLATTQIYTH-LDFQHLAKIYDAAHPRAKRKKQDD 335 >gi|253566649|ref|ZP_04844102.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5] gi|251944821|gb|EES85296.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5] Length = 293 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 42/276 (15%), Positives = 96/276 (34%), Gaps = 24/276 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSGV---ES 125 L + + + + + +++ Q+ FD ++ + +R + Sbjct: 2 LTDSFLDYLRYERNYSEKTVLAYGEDISQLREFAQERMEKFDPAEVKPELVREWIVSLMD 61 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + +T +S + L+S+R +K+ +RQ V+++P + PK K + +M + Sbjct: 62 QGYTSTSVNRKLSSLRSFYKYLLRQGEVSVDPLRKITGPKNKKPLPSFLKESEMNKLLDD 121 Query: 186 WS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPD 239 +G + RL E +G+R S+ + + + T K + D Sbjct: 122 TDFGEGLKGCRDRLIIEMFYATGMRLSELIGLDDKDVDFSASLLKVTGKRNKQRLIPFGD 181 Query: 240 GFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKA--GVNKSAHGV 289 + + + F+ + +++ K +K +S H + Sbjct: 182 ELKETMLEYVDIRNEMISGRSDAFFVRENGERLYKNLVYNLVKRNLSKVVTLKKRSPHVL 241 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 R AT + A + G ++ E YT Sbjct: 242 RHTFATTMLNNDAELGAVKELLGHSSLATTEIYTHT 277 >gi|29376760|ref|NP_815914.1| phage integrase family site specific recombinase [Enterococcus faecalis V583] gi|227517099|ref|ZP_03947148.1| phage integrase family site specific recombinase [Enterococcus faecalis TX0104] gi|227555253|ref|ZP_03985300.1| phage integrase family site specific recombinase [Enterococcus faecalis HH22] gi|255975282|ref|ZP_05425868.1| integrase [Enterococcus faecalis T2] gi|307285277|ref|ZP_07565421.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0860] gi|29344225|gb|AAO81984.1| site-specific recombinase, phage integrase family [Enterococcus faecalis V583] gi|227075470|gb|EEI13433.1| phage integrase family site specific recombinase [Enterococcus faecalis TX0104] gi|227175635|gb|EEI56607.1| phage integrase family site specific recombinase [Enterococcus faecalis HH22] gi|255968154|gb|EET98776.1| integrase [Enterococcus faecalis T2] gi|306502854|gb|EFM72116.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0860] gi|315573394|gb|EFU85585.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0309B] gi|315581045|gb|EFU93236.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0309A] Length = 369 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 51/364 (14%), Positives = 117/364 (32%), Gaps = 36/364 (9%) Query: 14 ERTRHGKIIYYFRKGHG--RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + + G+ F +G +++ Y + ST+ ++ S + TL Sbjct: 9 YKRKDGRWEGRFPRGRKIDGKLKYGYIYGSTYQEVRQKLYVAKANQQTIYQSRGQGAFTL 68 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR---K 127 I ++ + +++ S+ + +++ GD +I + VE Sbjct: 69 NEWIEQWLVIVK-KEVKLSTFASYSYKLSNYVLKTMGDSALNEIDDLRLNKLVEDLIAQG 127 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + S+ + AV+ +++ NPC ++ PK K IR E+ ++ ++ Sbjct: 128 LSKSTICVIFGILSRALNHAVKAKHLKSNPCSTISLPKPKRRHIRALDIEEQKKLENVAY 187 Query: 188 EGSQPR-LAFEFLLYSGLRCSDSCRAGVQHLQNN------------------------IF 222 + Q + L+ L++GLR + + + + Sbjct: 188 KNPQQQGLSVIVALHTGLRIGELAALRWEDINFKKDTIHVKHTFQRVSVSSFGESTQLYY 247 Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 I L + F + + + + +F K + Sbjct: 248 DCTKTINSERIIPMSNTVKNALKCQKEHSQGKFVFSRNNKPCEPRLLTYYFHKLRDKVQL 307 Query: 283 NK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRIS 340 +K H +R AT ++ + + A G + + Y R IK +R+ Sbjct: 308 DKVHFHQLRHTFATRCLESTSDIVSVSALLGHSSTQMTLDIYADSLLEQR--IKAIKRME 365 Query: 341 SVVD 344 + Sbjct: 366 RTIA 369 >gi|237667473|ref|ZP_04527457.1| phage integrase family protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|237655821|gb|EEP53377.1| phage integrase family protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 328 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 48/304 (15%), Positives = 103/304 (33%), Gaps = 48/304 (15%) Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-------------SGDFDYRKI 114 P ++ ++ Y ++ S + N+ +++ R D + I Sbjct: 14 PESVSDFLN-YLETI--RSKSPNTIDAYKIDLTLFFRFLCVYRGLVKNDIEFEDINISNI 70 Query: 115 TTKHIRSGVES------------RKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSV 161 + ++S R ++ + + + +++ FK+ + + ++ NP + + Sbjct: 71 DNEFLKSIKLRDLYAFLSFVEKYRNNSSYARARKVATLKSFFKYLFGKAKIISDNPAMEL 130 Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHL 217 E PK T + + F L G+R S+ C ++ + Sbjct: 131 ESPKINKRHPVYLTLNQSIALLESLDKDDKNYARDYCILTFFLNCGMRLSELCGIQIEKI 190 Query: 218 QNNIFSIKTQKTGTIITVELPDGFMKLLAMT----------PIGKETFFINNDKQKMNAT 267 + +I SI + TV L + ++ L K+ F++ +N Sbjct: 191 RGDILSIVGKGD-KERTVYLNEACLRALNNYLSVRDDSKASYENKKYLFLSARNAPINKR 249 Query: 268 QFSIWFKAKATKAGV---NKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYT 323 I K T AG + H +R +AT+ G L + G + + + YT Sbjct: 250 TVEIMIKKHITNAGFTGEKYTPHKLRHTAATLMYKYGNVDIRSLQSILGHENISTTQIYT 309 Query: 324 KGAD 327 D Sbjct: 310 HVDD 313 >gi|210610949|ref|ZP_03288674.1| hypothetical protein CLONEX_00864 [Clostridium nexile DSM 1787] gi|210152249|gb|EEA83256.1| hypothetical protein CLONEX_00864 [Clostridium nexile DSM 1787] Length = 429 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 53/365 (14%), Positives = 114/365 (31%), Gaps = 33/365 (9%) Query: 10 FVTKERT-RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 F+T + + GK F + + I+ + F + + Sbjct: 13 FMTAYKDEKTGKWFAKFYYTNWQGIK-KQKWKRGFATKKEAL---GFERDFLEKQSANPD 68 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK 127 T + L Y + L ++ ++ ++ I+ G +I +R Sbjct: 69 MTFQNLYEIYMEDTAAR-LKQSTLLTKKAVLQTHILPFFGSKPINEIKASDVRRWQAKLM 127 Query: 128 HTP-----SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDMQQ 181 +P + + T + + +A R + NPC + E + WT ++ Sbjct: 128 SSPNNYSQTYLKKINTELNSIINYAKRFYDLNTNPCGKAGTIGKAKAEEMDYWTYDEYIA 187 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSD----------------SCRAGVQHLQNNIFSIK 225 F+ + S + FE L ++G+R + S Q ++ Sbjct: 188 FREGVKDKSLSYICFEVLYWTGMREGELLALSPADIDLDNKTISINRTYQRIEGKDVFTS 247 Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 + + + +PD + L+ + + + + S V K Sbjct: 248 PKTRKSKRKIPIPDFLCQELSDYIQSRYMPDADERLFPVTKSYLSHEMIRGCKNTDVKKI 307 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVV 343 H +R A++ + G A L G + V TY+ + + + S+ Sbjct: 308 RIHDIRHSHASLLINQGCDALMLADRLGHEKVSTTLNTYSHLFPHKQ--QELVHSLESLQ 365 Query: 344 DSDDP 348 +D P Sbjct: 366 ATDSP 370 >gi|295690851|ref|YP_003594544.1| integrase family protein [Caulobacter segnis ATCC 21756] gi|295432754|gb|ADG11926.1| integrase family protein [Caulobacter segnis ATCC 21756] Length = 313 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 41/285 (14%), Positives = 91/285 (31%), Gaps = 32/285 (11%) Query: 74 LISEYRKSAHWGSLAV-NSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVES---RK 127 + + + A N+ ++ + G D + + + + R Sbjct: 8 WVDAFLEMMAVERAAARNTLTAYGKDLEDARGFLGRSKRDLDDADAEAVEAYFQDLGARG 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +P++A + +++R +++ + + + +P V PK + + ++++ + + Sbjct: 68 LSPATAARRRSAVRQFYRFVLGEGWRTDDPSRRVAAPKAGRPLPKVLERAEIERLLAAAT 127 Query: 188 E----------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVE 236 G + E + SGLR S+ + L + I K G Sbjct: 128 APNTEMGDSAQGLRLACIIELIYASGLRISELLALPLTALARDPAYLIVKGKGGKERLAP 187 Query: 237 LPDGFMKLLAMT------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284 L D + F ++ A + A AG+++ Sbjct: 188 LNDAARAAVNAYLAGRRTFLPKGAKESPWLFPSRGGSGRLTARRVGQLLDDAAIAAGIDR 247 Query: 285 ---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 S H +R AT + GA + G + + YT A Sbjct: 248 DKVSPHVLRHAFATHLLEGGADLRVIQTLLGHADIATTQIYTHVA 292 >gi|165977242|ref|YP_001652835.1| site-specific tyrosine recombinase XerC [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|307257905|ref|ZP_07539660.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|165877343|gb|ABY70391.1| integrase/recombinase XerC [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|306863592|gb|EFM95520.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 336 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 40/292 (13%), Positives = 92/292 (31%), Gaps = 24/292 (8%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI------TTKHIRSGVESRKHTP 130 +Y + + ++ +++ + T + I + + Sbjct: 47 DYLRIEKQA--SQHTLSNYQRQLLAVSDMLSQAGISTWQEVNSATVRWIIAQSNKQGLGA 104 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWS 187 S L ++R F + +RQE +++NP + ++ PK + E +Q + Sbjct: 105 KSIALRLVALRQWFSYLIRQEKMSVNPAVGIKAPKASKRLPKNIDAEQAKQLLTSDSHEP 164 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA 246 + E + SGLR S+ + + ++ K V + ++ L Sbjct: 165 SDLRDLAMMELMYSSGLRLSELQGLDLGDMDLAGREVRLLGKGNKERIVPIGSKALEALN 224 Query: 247 MTPIGKETFFINNDKQ-------KMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297 + F ++ +++ + + K G+ + H +R AT Sbjct: 225 RWLAVRNQFKPQDNAVFLNKRGGRLSHRSIQLVMQKWGEKQGLESHLHPHKLRHSFATHM 284 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLG--IKNSRRISSVVDSDD 347 +A + G + + YT D L + + DD Sbjct: 285 LEASGDLRAVQELLGHSNLATTQIYTH-LDFQHLAKIYDAAHPRAKRKKQDD 335 >gi|15640159|ref|NP_229786.1| site-specific tyrosine recombinase XerC [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587730|ref|ZP_01677491.1| tyrosine recombinase XerC [Vibrio cholerae 2740-80] gi|147673673|ref|YP_001218291.1| site-specific tyrosine recombinase XerC [Vibrio cholerae O395] gi|153818950|ref|ZP_01971617.1| tyrosine recombinase XerC [Vibrio cholerae NCTC 8457] gi|153822328|ref|ZP_01974995.1| tyrosine recombinase XerC [Vibrio cholerae B33] gi|227080364|ref|YP_002808915.1| integrase/recombinase XerC [Vibrio cholerae M66-2] gi|229508406|ref|ZP_04397910.1| tyrosine recombinase XerC [Vibrio cholerae BX 330286] gi|229508913|ref|ZP_04398403.1| tyrosine recombinase XerC [Vibrio cholerae B33] gi|229517027|ref|ZP_04406473.1| tyrosine recombinase XerC [Vibrio cholerae RC9] gi|229606679|ref|YP_002877327.1| site-specific tyrosine recombinase XerC [Vibrio cholerae MJ-1236] gi|254851512|ref|ZP_05240862.1| tyrosine recombinase xerC [Vibrio cholerae MO10] gi|255743919|ref|ZP_05417874.1| tyrosine recombinase XerC [Vibrio cholera CIRS 101] gi|262151158|ref|ZP_06028297.1| tyrosine recombinase XerC [Vibrio cholerae INDRE 91/1] gi|262167027|ref|ZP_06034744.1| tyrosine recombinase XerC [Vibrio cholerae RC27] gi|298501104|ref|ZP_07010904.1| tyrosine recombinase XerC [Vibrio cholerae MAK 757] gi|34223078|sp|Q9KVL4|XERC_VIBCH RecName: Full=Tyrosine recombinase xerC gi|172047518|sp|A5F4I4|XERC_VIBC3 RecName: Full=Tyrosine recombinase xerC gi|254799360|sp|C3LPX0|XERC_VIBCM RecName: Full=Tyrosine recombinase xerC gi|9654528|gb|AAF93305.1| integrase/recombinase XerC [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548029|gb|EAX58107.1| tyrosine recombinase XerC [Vibrio cholerae 2740-80] gi|126510512|gb|EAZ73106.1| tyrosine recombinase XerC [Vibrio cholerae NCTC 8457] gi|126520154|gb|EAZ77377.1| tyrosine recombinase XerC [Vibrio cholerae B33] gi|146315556|gb|ABQ20095.1| tyrosine recombinase XerC [Vibrio cholerae O395] gi|227008252|gb|ACP04464.1| integrase/recombinase XerC [Vibrio cholerae M66-2] gi|227011870|gb|ACP08080.1| integrase/recombinase XerC [Vibrio cholerae O395] gi|229346090|gb|EEO11062.1| tyrosine recombinase XerC [Vibrio cholerae RC9] gi|229354030|gb|EEO18963.1| tyrosine recombinase XerC [Vibrio cholerae B33] gi|229354679|gb|EEO19601.1| tyrosine recombinase XerC [Vibrio cholerae BX 330286] gi|229369334|gb|ACQ59757.1| tyrosine recombinase XerC [Vibrio cholerae MJ-1236] gi|254847217|gb|EET25631.1| tyrosine recombinase xerC [Vibrio cholerae MO10] gi|255738402|gb|EET93792.1| tyrosine recombinase XerC [Vibrio cholera CIRS 101] gi|262024545|gb|EEY43229.1| tyrosine recombinase XerC [Vibrio cholerae RC27] gi|262031052|gb|EEY49677.1| tyrosine recombinase XerC [Vibrio cholerae INDRE 91/1] gi|297540138|gb|EFH76199.1| tyrosine recombinase XerC [Vibrio cholerae MAK 757] Length = 311 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 39/311 (12%), Positives = 101/311 (32%), Gaps = 24/311 (7%) Query: 60 YINSPRKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS---GDFDYRKIT 115 + P L + + H L++ ++ +++ + + + G + ++ Sbjct: 2 KNDERTPLPDALAQPLERFYAYLHTEKGLSLYTQRNYKQQLETMTQYLVQVGLTHWTQLD 61 Query: 116 TKHIR---SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 + +R + + SS L+S+R + + + + NP V P+++ + Sbjct: 62 SAWVRQLVMQGKRQGMKASSIATRLSSLRSFLDFLILRGELQANPAKGVSAPRKQRTLPK 121 Query: 173 PWTKEDMQQFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229 ++M Q + + R E + +GLR ++ ++ + + I+ Sbjct: 122 NLDVDEMAQLLEVTDDDPLSIRDRAIMELMYGAGLRLAELVSIDIKDVNLSEGEIRVIGK 181 Query: 230 -GTIITVELPDGFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKA 280 V + + + F++ +++ K Sbjct: 182 GNKERKVWFAGQAQEWVGKWLKLRSQLADSAETALFVSKLGTRISHRSVQKRMAEWGQKQ 241 Query: 281 GV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG--IKNS 336 V + S H +R AT ++ + G + + + YT D L + Sbjct: 242 AVASHISPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTH-LDFQHLAQVYDQA 300 Query: 337 RRISSVVDSDD 347 + + DD Sbjct: 301 HPRARKKNKDD 311 >gi|319957731|ref|YP_004168994.1| tyrosine recombinase xerd subunit [Nitratifractor salsuginis DSM 16511] gi|319420135|gb|ADV47245.1| tyrosine recombinase XerD subunit [Nitratifractor salsuginis DSM 16511] Length = 276 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 41/264 (15%), Positives = 86/264 (32%), Gaps = 20/264 (7%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132 +EY + L+ S S+ + Q+ + GD K+ T+ I + + + + Sbjct: 10 EAFAEYLQIV--KGLSPKSIDSYLTDLRQLAEEQGD--LLKLETESILAFLSRFDNK-RT 64 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SE 188 + L S+ + R++ + + + + E+++ + Sbjct: 65 LNRKLASINAFVNFCHREKLGTSRV--KIPMARVPKTLPKYLSHEEIEAGLRYIDRSTPI 122 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248 G + FL SG R S++ L + I+ K V L +K L Sbjct: 123 GRRDYALILFLYASGCRISEALAVQRGDLVDGWLKIRYAKGARERMVPLAPAALKALEEH 182 Query: 249 ----PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATA 304 I ++N + ++ + + S H +R AT GA Sbjct: 183 LKESDIASPYLWLNYRGEPLSRVSAYKIVRKY-----LGVSPHVLRHSFATALILGGADL 237 Query: 305 HELMATYGWKTVDQAETYTKGADR 328 + G ++ + YT + Sbjct: 238 RVVQELLGHSSLITTQIYTHIERQ 261 >gi|296164601|ref|ZP_06847168.1| integrase/recombinase XerD [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295900020|gb|EFG79459.1| integrase/recombinase XerD [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 313 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 45/282 (15%), Positives = 91/282 (32%), Gaps = 36/282 (12%) Query: 78 YRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKH----- 128 Y +A N+ S+ + + G D K+ + + + + Sbjct: 13 YLDHLTIERGVAANTLSSYRRDLRRYTKHLSDRGIHDLAKVGEDDVSEFLVALRRGDPDA 72 Query: 129 -----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + SA + L ++R L ++A + ++ +V P + T + + Sbjct: 73 GTAALSAVSAARALIAVRGLHRFAAAEGLAELDVARAVRPPTPGRRLPKSLTIDQVLALL 132 Query: 184 SFWSEGS--------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIIT 234 S + R E L +G R S++ V + + S+ K G Sbjct: 133 EGAGGDSASDGPLTLRNRALLELLYSTGARISEAVGLDVDDVDSRARSVLLRGKGGKQRL 192 Query: 235 VELPDGFMKLLAMTPIGKETF-----------FINNDKQKMNATQFSIWFKAKATKAGV- 282 V + ++ L + F+N +++ + A +AG+ Sbjct: 193 VPVGRPAVQALDAYLVRGRPDLARRGRGTPAIFLNVRGGRLSRQSAWQVLQDAAERAGIS 252 Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 S H +R AT + GA + G +V + YT Sbjct: 253 SGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYT 294 >gi|77461722|ref|YP_351229.1| site-specific tyrosine recombinase XerC [Pseudomonas fluorescens Pf0-1] gi|123602828|sp|Q3K4R6|XERC_PSEPF RecName: Full=Tyrosine recombinase xerC gi|77385725|gb|ABA77238.1| tyrosine recombinase [Pseudomonas fluorescens Pf0-1] Length = 299 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 37/295 (12%), Positives = 92/295 (31%), Gaps = 24/295 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRK-----SGDFDYRKITT-KHIRSGVESRK 127 + Y + ++ ++ ++ D+++ G + I + + + + ++ Sbjct: 5 LDAYCEHLRSERQVSPHTLSAYRRDLDKVLGWCIKQNIGSWQALDIQRLRSLIARLHAQG 64 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + S + L+++R L+ + R+ +P + PK + + + Q Sbjct: 65 QSSRSLARLLSAVRGLYHYLNRECLCDHDPATGLAPPKGERRLPKTLDTDRALQLLEGAV 124 Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFM 242 E + + E SGLR S+ + L + K + + Sbjct: 125 EDDFLARRDQAILELFYSSGLRLSELTGLNLDQLDLADGMVQVLGKGSKTRLLPVGKKAR 184 Query: 243 KLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSA 294 + L + F++ +++ + K + G N H +R A Sbjct: 185 EALEQWLPLRALTNPSDDAVFVSQQGRRLGPRAIQVRVKLAGERELGQNLHPHMLRHSFA 244 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI---KNSRRISSVVDSD 346 + ++ + G + + YT D L R + D Sbjct: 245 SHLLESSQDLRAVQELLGHSDIKTTQIYTH-LDFQHLAAVYDSAHPRAKRMKGDD 298 >gi|218461906|ref|ZP_03501997.1| phage integrase [Rhizobium etli Kim 5] Length = 383 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 53/353 (15%), Positives = 96/353 (27%), Gaps = 23/353 (6%) Query: 18 HGKIIYYFRKGHGRRIR------LPYPHESTFIPAYMSALTGSTPKREYINSPRKKP--- 68 G Y + G R R + A L G + S R Sbjct: 18 SGAKYYGLKTRIGGRQRWITIGRHGSLWTTDGARADALRLLGQKAAGKDPASERDHRKQA 77 Query: 69 -TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESR 126 TTL+ L + + + +E + II G + I Sbjct: 78 VTTLRELCERFLADYAETHVKAKTAKDYEQLIRKLIIPALGRHGIADLKRSDISQFHHDL 137 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK--- 183 + P + L + +F A + N PK + + + Sbjct: 138 RDRPYLGNRALAVLSKMFNLAEQWGLRDDNTNPCRHVPKFRESKRERYLTNGELKRLGEV 197 Query: 184 -----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVE 236 + +E A L+ +G R S+ + +H+ ++ KTG V Sbjct: 198 LAQAETSNTESPHMIAAIRLLILTGARLSEITKLQWEHVDLEHGLLRLPDSKTGKKDIVL 257 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSAT 295 L + + I + + + KAG++ H +R A+ Sbjct: 258 NDAALDVLKKLPRASGNPYVIVGGRSGQHLVNVKGPWGRLRKKAGLDDLRIHDLRHSFAS 317 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISSVVDSDD 347 ++A G + + G Y D +R S + D Sbjct: 318 VAAGMGESLPIIGKLLGHTQTQTTARYAHLQMDPLRAASNAIGAAVSSAMNPD 370 >gi|261419412|ref|YP_003253094.1| site-specific tyrosine recombinase XerC [Geobacillus sp. Y412MC61] gi|297530613|ref|YP_003671888.1| tyrosine recombinase XerC [Geobacillus sp. C56-T3] gi|319766227|ref|YP_004131728.1| tyrosine recombinase XerC [Geobacillus sp. Y412MC52] gi|261375869|gb|ACX78612.1| tyrosine recombinase XerC [Geobacillus sp. Y412MC61] gi|297253865|gb|ADI27311.1| tyrosine recombinase XerC [Geobacillus sp. C56-T3] gi|317111093|gb|ADU93585.1| tyrosine recombinase XerC [Geobacillus sp. Y412MC52] Length = 300 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 45/284 (15%), Positives = 91/284 (32%), Gaps = 28/284 (9%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR--- 126 L EY + + + + + + +Q R G +++ +R + Sbjct: 9 QLFMEYLQIE--KNYSQYTIVCYRRDIEQFFRFMDEEGIGALNEVSYSDVRLYLTKLYEQ 66 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + S + ++S+R +K+ +R+ VA NP PK++ + ++++ Sbjct: 67 QLASRSVARKISSLRSFYKFLLREGRVAENPFALATLPKKEQKIPNFLYPKELEALFLVN 126 Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGF 241 E + + E L +G R S+ C + + ++ K V Sbjct: 127 DENTALGQRNAALLELLYATGARVSECCHIQLSDVDFVAETVLIHGKGNKQRYVPFGRPA 186 Query: 242 MKLLAMTPIG------------KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287 + L F+N + A + N S H Sbjct: 187 REALERYIHRGRRELTRKLPADHRYLFVNARGNPLTPRGVRHILDRIVEAAALTQNISPH 246 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330 +R AT + GA + G + + YT DR+R Sbjct: 247 VLRHTFATHLLNEGADLRSVQELLGHAHLSSTQVYTHVTKDRLR 290 >gi|319785871|ref|YP_004145346.1| tyrosine recombinase XerC [Pseudoxanthomonas suwonensis 11-1] gi|317464383|gb|ADV26115.1| tyrosine recombinase XerC [Pseudoxanthomonas suwonensis 11-1] Length = 291 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 37/275 (13%), Positives = 93/275 (33%), Gaps = 18/275 (6%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVE---SRKH 128 I ++ + +++ ++ ++ + + + D ++ +R V R Sbjct: 4 IQDFLEHLRVERAMSPHTLDAYRRDLQALQDWAFERGEDVVRMDGGRLREFVASEHRRGL 63 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ---FKSF 185 +P+S + L++ R + W ++ + +P + + P+ + + ++ Q + Sbjct: 64 SPTSLQRRLSACRSYYAWLLKHGVIEASPAIGLRAPRAPRKLPQVLDVDEAVQLVEVDTS 123 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKL 244 G + R E SGLR S+ C + L + K +V + + Sbjct: 124 APLGLRDRALLELFYSSGLRLSELCALRWRDLHLDQGLVTVLGKGSRQRSVPVGSHARRA 183 Query: 245 LAMTPIG-----KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297 L + F ++ + + A + G+ + H +R A+ Sbjct: 184 LEEWRSSTGAGSDDFVFPGRGGGPISQRAVQVRMRQLAARQGLFKHVHPHMLRHSFASHV 243 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 ++ + G + + YT D L Sbjct: 244 LESSGDLRGVQELLGHADIATTQIYTH-LDFQHLA 277 >gi|329929830|ref|ZP_08283506.1| phage integrase, N-terminal SAM domain protein [Paenibacillus sp. HGF5] gi|328935808|gb|EGG32269.1| phage integrase, N-terminal SAM domain protein [Paenibacillus sp. HGF5] Length = 294 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 39/273 (14%), Positives = 92/273 (33%), Gaps = 24/273 (8%) Query: 74 LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGVESRKHT 129 + EY + L+ ++ S+ + + + + + R++ + V + Sbjct: 4 YLDEYVQYLEDEKGLSRSTIASYRADLQGFLAFAAEREVTHPREVNRTLLGLYVGRLRQQ 63 Query: 130 PSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 +A L +R F++ VRQ + +P ++ PK + + + T E + + S Sbjct: 64 GKAASSLLRCTASLRSFFQYLVRQAVIVQDPTQLLDNPKPERKPPKSLTVEQVDKLLSAP 123 Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241 G+ + + E L SG++ S+ V +Q + ++ G + + Sbjct: 124 DSGTPQGARDKAMLELLYASGIKVSELVNLSVHDIQLEMRFLRCAVSGGKERILPITPIA 183 Query: 242 MKLLAMTPIGKETFFINNDK----------QKMNATQFSIWFKAKATKAGVN--KSAHGV 289 + +A+ + + ++ F K A ++ + H + Sbjct: 184 AESVALYVRDMRDKLMRDAGEDALFLNSLGTRLTRQGFWKIIKKYGKLADIDEDITPHTL 243 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETY 322 R A GA + G + Y Sbjct: 244 RHSFAMHLLGNGADLRSVQEMLGHSALSTTGMY 276 >gi|327404137|ref|YP_004344975.1| Tyrosine recombinase xerC [Fluviicola taffensis DSM 16823] gi|327319645|gb|AEA44137.1| Tyrosine recombinase xerC [Fluviicola taffensis DSM 16823] Length = 293 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 40/260 (15%), Positives = 90/260 (34%), Gaps = 21/260 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSG---DFDYRKITTKHIRSGVESRKHTP---SSAIQFLT 138 + ++ +++E +Q + S ++R++ + +R+ V + + + ++ Sbjct: 15 KRYSKHTILAYEEDLNQFVSFSELKESVEWREVNYQLVRAWVVGLLESGQSNRTVSRKIS 74 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-----FWSEGSQPR 193 +R FKW + + + NP L + PK + + + ++ + EG + R Sbjct: 75 CLRSFFKWLINEGKIGENPMLRIRGPKVEKRLPQFVKQTEIDGARIEGLFSSNFEGVRDR 134 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253 L FE +G+R S+ + + + K + + +++ K Sbjct: 135 LMFELFYQTGIRLSELIELKNKDVSSVSIK-VLGKRNKERIIPIGQELHEIILAYQSIKP 193 Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGV---------NKSAHGVRKFSATISADAGATA 304 + + + K K KS H +R AT + GA Sbjct: 194 GGPDSQILLFVKKDGRKLSPKFVYRKINTYLGSVTNVQKKSPHILRHTFATHMLNNGAGL 253 Query: 305 HELMATYGWKTVDQAETYTK 324 L G + + YT Sbjct: 254 ETLKELLGHANLSATQVYTH 273 >gi|325954362|ref|YP_004238022.1| Tyrosine recombinase xerC [Weeksella virosa DSM 16922] gi|323436980|gb|ADX67444.1| Tyrosine recombinase xerC [Weeksella virosa DSM 16922] Length = 301 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 44/279 (15%), Positives = 97/279 (34%), Gaps = 29/279 (10%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGV---ESR 126 I + + ++++ ++ D + K HIRS + + Sbjct: 4 IQRFLDYLQYEKRYSLHTIKNYRRDLDDFLSFYQIEESSDSIEKAEKNHIRSFIISLSDK 63 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ------ 180 + S + L+S+R + + ++ + +P L ++ K K E I P+T+++MQ Sbjct: 64 NISERSINRKLSSLRTFYIYLIKTGQLTTSPMLQIKSLKTKKEVIIPYTEKEMQRLFELE 123 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA-----GVQHLQNNIFSIKTQKTGTIITV 235 +G + RL +G+R + + ++ + + + ++ I Sbjct: 124 NIFPDDFDGIRDRLMMNLFYQTGIRRGELIQLTLPQLRIEQKEIKVLGKRNKERVLPIGE 183 Query: 236 ELPDGFMKLLAMTPIG--------KETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAH 287 L F + L + +K + + + K KS H Sbjct: 184 NLVSEFTRYLKVRKEVVGSENLTLFIKNNGQALYEKFVYERVNYYLSFITEKH--KKSPH 241 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 +R AT + GA + L G ++ + YT + Sbjct: 242 VLRHTFATQLLENGADLNALKEILGHSSLSSTQIYTHSS 280 >gi|291550597|emb|CBL26859.1| Site-specific recombinase XerD [Ruminococcus torques L2-14] Length = 306 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 36/281 (12%), Positives = 86/281 (30%), Gaps = 28/281 (9%) Query: 75 ISEYRKSAHWGS-LAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVESRKHTPSS 132 + +Y + + L N+ ++ Q D ++ +I + K + Sbjct: 7 VEKYLEYCEFRKELDWNTLKAYRIDLRQFFEYTMEDIPGKEKIEDYITELHKKFKQK--T 64 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVE-------------RPKRKTEGIRPWTKEDM 179 + + S++ + + +E ++ NP ++ + E + ++ Sbjct: 65 IKRKIASVKAYYNFLEEREIISDNPFRKIKVGFKESIILPRIIPREEIEELLNFMYAQEN 124 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELP 238 + + E L +G R + + N I+ K G +++ Sbjct: 125 KSNVKVHKFWLRDIAVIETLFATGARVYEISNIREDSVNLNTGLIRLMGKGGKERYIQIA 184 Query: 239 DGFMKLLAMTPIGKE--------TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288 + L + FF+NN + + K AG+ + + H Sbjct: 185 SSEILDLLKNYYKENAKEIKQSGFFFVNNRGCRYTEQSIRLMLKKYTKLAGIERNITPHM 244 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + G + G ++ + Y A + Sbjct: 245 FRHSFATYLIEEGVDISCVQQILGHSSIKTTQIYIHVAAKK 285 >gi|255692297|ref|ZP_05415972.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM 17565] gi|260622031|gb|EEX44902.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM 17565] Length = 368 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 29/269 (10%), Positives = 80/269 (29%), Gaps = 15/269 (5%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPS 131 Y + + ++ ++ +YF + ++ I + +K + S Sbjct: 94 EGYLELLEQKRYSPSTVKTYRAYFSDFMEYHKGRSIDRLKVADINKYILYLVNEKKISVS 153 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 + +++ + + + + R K +++++++ + Sbjct: 154 QQNMRINAIKF---YYEQVKGGKRQYYGGITRAKEYKTLPEVLSRDEVKRIL-SCLTNQK 209 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----ELPDGFMKLLA 246 + +GLR S+ Q + + ++ G ++ + Sbjct: 210 HHCMISLIYSAGLRRSELLNLTPQDIVSERMLVRIMGKGKKCRYSLLSEKVLHELREYFK 269 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAH--GVRKFSATISADAGATA 304 K F + ++ +A+ K A +AG+ H +R AT + G Sbjct: 270 EYRPKKWLFEGDTPGEQYSASALVKVLKEAAQRAGIKHRVHVHMLRHSFATHLLEQGTDL 329 Query: 305 HELMATYGWKTVDQAETYTKGADRIRLGI 333 + G + Y + I Sbjct: 330 RTIQELLGHNDIKTTSIYLHVTSAHKSSI 358 >gi|260186653|ref|ZP_05764127.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis CPHL_A] gi|289447315|ref|ZP_06437059.1| integrase [Mycobacterium tuberculosis CPHL_A] gi|289420273|gb|EFD17474.1| integrase [Mycobacterium tuberculosis CPHL_A] Length = 311 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 44/282 (15%), Positives = 91/282 (32%), Gaps = 36/282 (12%) Query: 78 YRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKH----- 128 Y +A N+ S+ + + G D K+ + + + + Sbjct: 11 YLDHLTIERGVAANTLSSYRRDLRRYSKHLEERGITDLAKVGEHDVSEFLVALRRGDPDS 70 Query: 129 -----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + SA + L ++R L ++A + V ++ +V P + T +++ Sbjct: 71 GTAALSAVSAARALIAVRGLHRFAAAEGLVELDVARAVRPPTPSRRLPKSLTIDEVLSLL 130 Query: 184 S--------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIIT 234 + R E L +G R S++ + + + S+ K G Sbjct: 131 EGAGGDKPSDGPLTLRNRAVLELLYSTGARISEAVGLDLDDIDTHARSVLLRGKGGKQRL 190 Query: 235 VELPDGFMKLLAMTPIGKETF-----------FINNDKQKMNATQFSIWFKAKATKAGVN 283 V + + L + F+N +++ + A +AG+ Sbjct: 191 VPVGRPAVHALDAYLVRGRPDLARRGRGTAAIFLNARGGRLSRQSAWQVLQDAAERAGIT 250 Query: 284 --KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 S H +R AT + GA + G +V + YT Sbjct: 251 AGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYT 292 >gi|257874138|ref|ZP_05653791.1| site-specific recombinase [Enterococcus casseliflavus EC10] gi|257808302|gb|EEV37124.1| site-specific recombinase [Enterococcus casseliflavus EC10] Length = 299 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 40/280 (14%), Positives = 92/280 (32%), Gaps = 26/280 (9%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGVESRK 127 L E+ + + ++ +++ + +++SG+ D + + +R + Sbjct: 4 DQLQEEFFRYLIVERGYSEKTKKAYQEDMNDFFHFLKESGNEDPLAVEYRDVRVYLSYLT 63 Query: 128 HTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 S + + S+R +++ + E V NP + K+ + R + +++M Sbjct: 64 ERGYSRNSISRKMASLRSFYQFLTKHEIVKENPFAYIHLKKKNAKLPRFFYEKEMDALFQ 123 Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-------------NIFSIKTQ 227 + + E L SGLR S+ + + + + Sbjct: 124 SVAGDEPLQQRNQALLEVLYGSGLRVSECSSLTLGAIDWESGVLLIHGKGNKDRYVPFGS 183 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KS 285 + L G +L+ E F+N+ + AT K+ ++ Sbjct: 184 YAQAAVKRYLSSGRKQLMEKQNKEHEVLFVNHLGDGITATGIEYVLNQIIRKSSLDSKIH 243 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 H +R AT + GA + G + + Y Sbjct: 244 PHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHV 283 >gi|161869347|ref|YP_001598514.1| integrase/recombinase [Neisseria meningitidis 053442] gi|189030079|sp|A9M1G2|XERC_NEIM0 RecName: Full=Tyrosine recombinase xerC gi|161594900|gb|ABX72560.1| integrase/recombinase [Neisseria meningitidis 053442] Length = 305 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 39/293 (13%), Positives = 88/293 (30%), Gaps = 30/293 (10%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGV 123 Y ++ + ++ ++ +++ + ++ + + + Sbjct: 6 FAAHFDAYLENIVREGKSEHTVAAYRRDLEELFALLAQMPSEAEGGVPQGLSRRDFTAAL 65 Query: 124 ESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + + L+S R W V + + +P ++ PK+ + +E + Sbjct: 66 RRLSQRGLNARTLARKLSSWRQYCVWLVERGLLHTDPTADIKPPKQPERVPKALPQEWLN 125 Query: 181 QFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIIT 234 + +G + FE + SGLR S+ + + + T K Sbjct: 126 RMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQ 185 Query: 235 VELPDGFMKLLAMTPIGKETFFIN---NDKQKMNATQFSIWFKAKATKA-----GVNKSA 286 V L ++ L ++T + K A A G + S Sbjct: 186 VPLTGKSVEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHVSP 245 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 H +R A A + G ++ + YTK L + R+ Sbjct: 246 HMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK------LDFDHIARL 292 >gi|167041339|gb|ABZ06093.1| putative Phage integrase family protein [uncultured marine microorganism HF4000_005I08] Length = 422 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 49/359 (13%), Positives = 100/359 (27%), Gaps = 39/359 (10%) Query: 18 HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK---PTTLKWL 74 G+ ++ HG P + G+ + R T+ L Sbjct: 55 GGRQRWFTIGRHG------SPWTVEKARTRAKRIIGNIADGKDPAKDRDADKNKPTVAEL 108 Query: 75 ISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS- 132 Y + +S S + + ++ G +T I + K SS Sbjct: 109 CERYLEDYAKEHKKPSSLKSDQKNIENHVLPLLGREFVASVTFADIDRFKRAVKDGKSSR 168 Query: 133 ------------------AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 A + L + +F A R + ++ + + Sbjct: 169 ERKPEHQGGPNVTGGKGVANRCLALLSKMFNLAERWGWCSVGSNPCRHVDRYPENKREKF 228 Query: 175 TKEDMQQFK-----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQ 227 + SE A L+++G R + H+ + Sbjct: 229 LSDKELAALAEVLNKSESENPYAVAAIRMLIFTGARLGEILHLEWAHVDMERAMLLLPDP 288 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSA 286 KTG L + + I +K + + +AG+ + Sbjct: 289 KTGQKAVFLSAPALDVLANLPHMKNNPHVICGEKDGSHLVNLQKPWGRIRKRAGLEDVRL 348 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNS-RRISSVV 343 H +R A+++A G + + G Y AD ++ + +RI++V+ Sbjct: 349 HDLRHSFASVAASGGLSLPMIGKLLGHTQAATTARYAHLAADPLKAANEAIGQRIAAVM 407 >gi|85702955|ref|ZP_01034059.1| tyrosine recombinase XerD [Roseovarius sp. 217] gi|85671883|gb|EAQ26740.1| tyrosine recombinase XerD [Roseovarius sp. 217] Length = 323 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 42/294 (14%), Positives = 93/294 (31%), Gaps = 33/294 (11%) Query: 73 WLISEYRKSAHWG-SLAVNSRISFESYFDQIIRK--SGDFDYRKITTKHIRSG---VESR 126 + + ++ A N+ +++ + + I S +++ Sbjct: 6 AWVDLFLEAQAAELGAAKNTLMAYARDLRDFTDWVKYQNLSLDNLMQPDIESYLVQCDAQ 65 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK--- 183 P++ + L+++R L+++A + A NP + ++ P + + T++++ + Sbjct: 66 GLAPATRARRLSAIRQLYRFAFEERLRADNPAIRIKGPGKAQRLPKTLTEDEVGRLLEVA 125 Query: 184 --SFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238 + + R A L +G+R S+ + + + + K G V L Sbjct: 126 PQHGRTATERCRNACLMALLYATGMRVSELVSLPLAAARGDPQMLLVRGKGGKERMVPLS 185 Query: 239 DGFMKLLAMT----------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 L F + +F K A KA V Sbjct: 186 PPARTALVDWLALRDAEETARRSKGLAPSPFLFASGGTAGYLTRHRFYNLIKEFAVKAHV 245 Query: 283 N---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 + + H +R AT GA + G + E YT + + Sbjct: 246 DPEKVTPHTLRHAFATHLLANGADLRVIQTLLGHADIATTEIYTHVLEARLQAL 299 >gi|34541361|ref|NP_905840.1| integrase/recombinase XerD [Porphyromonas gingivalis W83] gi|34397678|gb|AAQ66739.1| integrase/recombinase XerD [Porphyromonas gingivalis W83] Length = 308 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 48/270 (17%), Positives = 99/270 (36%), Gaps = 23/270 (8%) Query: 87 LAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMR 141 L NS ++ ++ + +R+++ ++++ V + S + ++ ++ Sbjct: 20 LTPNSVDAYLKDLSKLDSYLTAENISFREVSYENLQHFVAELYDLGISARSIARIISGVK 79 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ----FKSFWSEGSQPRLAFE 197 F++ V +EY+ +P +E P+ T E++ + + R E Sbjct: 80 SFFRFLVLEEYIEADPTELLEGPRIGVHLPTVLTIEEVDRLIGSIDPAAQGAQRNRAILE 139 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPI------ 250 L GLR S+ +L N ++ V + + + L Sbjct: 140 ILYSCGLRVSELTSLKFSNLFLNESFLRIDGKGRKQRLVPMSETAITELKRYLSDPERPT 199 Query: 251 ----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATA 304 +E F++N + ++ + K A +AG+ KS H R AT + GA Sbjct: 200 PVLGQEEYVFLSNRGKAISRIMVFVMIKKLAEEAGITKSISPHTFRHSFATHLLEGGANL 259 Query: 305 HELMATYGWKTVDQAETYTKGADRIRLGIK 334 + G + + E YT DR L + Sbjct: 260 QAIQLMLGHENIATTEIYTH-IDRETLRHE 288 >gi|254470878|ref|ZP_05084281.1| tyrosine site-specific integrase/recombinase protein [Pseudovibrio sp. JE062] gi|211960020|gb|EEA95217.1| tyrosine site-specific integrase/recombinase protein [Pseudovibrio sp. JE062] Length = 319 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 37/285 (12%), Positives = 77/285 (27%), Gaps = 30/285 (10%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRS 121 + I ++ LA + ++E Q +R + K R Sbjct: 19 VTAAIEDWIDHLGSERRLAERTLEAYERDTRQFLRFMTSYEGEPVALRHLESLKPKDFRG 78 Query: 122 GVESRKHTPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + +R+ + L +R + + V +V P+ +P E+ Sbjct: 79 FLATRRKDGAQTRTLARGLAGIRSFLSFLEERGEVNAAGAAAVRTPRLPRSLPKPIPVEE 138 Query: 179 MQQ-------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--IKTQKT 229 + F+ ++ F L GLR S++ K Sbjct: 139 AKAIVSSDLAFEDTPWVEARNAAVFTLLYGCGLRISEALSLTPATAPKEGDKSLKVRGKG 198 Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM-------NATQFSIWFKAKATKAGV 282 V + ++ + N NA + + + G+ Sbjct: 199 NKERLVPVLPVVVEAIEAYKDQCPYDLSANSPLFRGVRGGALNARMIQLAMQKIRSALGL 258 Query: 283 N--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 + H +R AT G + G ++ + YT+ Sbjct: 259 PDTATPHALRHSFATHLLSEGGDLRSIQELLGHASLSTTQIYTEV 303 >gi|114567775|ref|YP_754929.1| phage integrase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338710|gb|ABI69558.1| phage integrase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 392 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 43/365 (11%), Positives = 103/365 (28%), Gaps = 54/365 (14%) Query: 11 VTKERTRHGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65 + + + + + + R G R+ + + Y+ + G + Sbjct: 4 IKPYKDQKNEWVLRYDSSDPRTGERRQHKKRFTGTKREANKYLQRILGEIE---SGSYSD 60 Query: 66 KKPTTLKWLISEYRKSA-HWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGV 123 T+K + ++ + +L + S+ S + II G + HI Sbjct: 61 LGNITIKQYLDKWINAYCTPTNLQPKTIRSYTSTINNHIIPHLGRHKLNNLKAAHIADYY 120 Query: 124 ESRKH---------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 +P++ + + K AV Q+Y+ NP V+ P++ I+ Sbjct: 121 ALMSKSRTEGGAGLSPTTVLYHHRILHQALKHAVNQDYLKQNPVAKVQPPRKNRPDIKVL 180 Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234 + + ++ Q L L +G+R ++ Q++ + ++ Sbjct: 181 S-VEQARYLIARYSEEQIYLPVFLALMTGMREAEIAALRWQNVDFDNRTLSVTNALQRQE 239 Query: 235 VE------------------------------LPDGFMKLLAMTPIGKETFFINNDKQKM 264 D + ++L + D + Sbjct: 240 NRLELKEPKTKKSRRSIPVPEQVVVVLKKEKERQDCYREILGEGYDCRGFVCAWEDGKPY 299 Query: 265 NATQFSIWFKAKA---TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-E 320 + + K H +R ATI + G +++ + Sbjct: 300 DPEWIGKQWAKLVASDDKIPNGVRFHDLRHTHATILLSQNINLKVIQDRLGHESIATTGD 359 Query: 321 TYTKG 325 Y+ Sbjct: 360 IYSHV 364 >gi|68171192|ref|ZP_00544598.1| Phage integrase:Phage integrase, N-terminal SAM-like [Ehrlichia chaffeensis str. Sapulpa] gi|88658398|ref|YP_507161.1| phage integrase family site specific recombinase [Ehrlichia chaffeensis str. Arkansas] gi|67999386|gb|EAM86029.1| Phage integrase:Phage integrase, N-terminal SAM-like [Ehrlichia chaffeensis str. Sapulpa] gi|88599855|gb|ABD45324.1| site-specific recombinase, phage integrase family [Ehrlichia chaffeensis str. Arkansas] Length = 311 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 44/272 (16%), Positives = 86/272 (31%), Gaps = 29/272 (10%) Query: 82 AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI--------RSGVESRKHT---P 130 A N+ S+ ++ I R +T + I R R Sbjct: 18 KKERRYATNTVDSYLRDVNKFIEFLYMCVLRPVTLEDIIGVKVADLRKWFAFRYQANIEA 77 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---- 186 + + L++++ F++ R + + RPK K+ R T+ +Q+ ++ Sbjct: 78 VTNARSLSALKNFFRYLSRTYNIDGQAVFCLSRPKLKSTLPRTLTQSHIQKIIDYYALLD 137 Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 + L GLR S++ Q+++ I +++ I LP L Sbjct: 138 TDWIVKRDFALIVLLYGCGLRISEAVNLKFQNIRREELLIIGKRSKERILPILPIVRQSL 197 Query: 245 LAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAGVN--KSAHGVRKF 292 +N+ K + T F+ + + G+ + H R Sbjct: 198 DEYVRCCPYHMELNSVKNEYVFVGVRGKKLKRTYFANRIQKICKEIGLPDVITPHAFRHS 257 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324 AT GA + G + + YT Sbjct: 258 FATHLFLGGADIRSIQELLGHANLSTTQIYTH 289 >gi|125973246|ref|YP_001037156.1| site-specific tyrosine recombinase XerC [Clostridium thermocellum ATCC 27405] gi|256003724|ref|ZP_05428712.1| integrase family protein [Clostridium thermocellum DSM 2360] gi|281417446|ref|ZP_06248466.1| integrase family protein [Clostridium thermocellum JW20] gi|125713471|gb|ABN51963.1| phage integrase [Clostridium thermocellum ATCC 27405] gi|255992285|gb|EEU02379.1| integrase family protein [Clostridium thermocellum DSM 2360] gi|281408848|gb|EFB39106.1| integrase family protein [Clostridium thermocellum JW20] gi|316940523|gb|ADU74557.1| integrase family protein [Clostridium thermocellum DSM 1313] Length = 330 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 49/317 (15%), Positives = 104/317 (32%), Gaps = 44/317 (13%) Query: 73 WLISEYRKSAH-WGSLAVNSRISFESYFDQIIRK-------------SGDFDYRKITTKH 118 +I ++ + N+ + R D + + Sbjct: 11 AIIKDFLSYMETIRGKSKNTIHEYYYDLRLFFRFMKIHFGLEDSKKDFDSIDIKDMDIDV 70 Query: 119 IRSGV------------ESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPK 165 I+ R +T SS + + S+R F + + + + NP +E PK Sbjct: 71 IKKITLSDIYSFMSFLSRERDNTASSRARKVASIRSFFNYLTNKAKLLEQNPAAELESPK 130 Query: 166 RKTEGIRPWTKEDMQQFKSFWS--EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223 R E+ ++ + L GLR S+ + +++N++ + Sbjct: 131 IMKRLPRYLNIEESKRLLGSIDGEHKERDFAIITLFLNCGLRLSELVNINLSNIKNDVLT 190 Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKA 275 + + T+ L K L + + + Q+++ K Sbjct: 191 VVGKGN-KERTIYLNAACKKALDAYLKVRPVDGVKDKNALFLSSRKQRISNKTVQHIVKK 249 Query: 276 KATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKG-ADRIR 330 AG++ S H +R +AT+ G L G +++ E YT + +++ Sbjct: 250 YIKAAGLDPERYSTHKLRHTAATLMYKHGNVDIRALQEILGHESIATTEIYTHVDSQQLK 309 Query: 331 LGIKNSRRISSVVDSDD 347 ++ S +S+ VD D Sbjct: 310 NAVE-SNPLSTYVDEHD 325 >gi|241766196|ref|ZP_04764098.1| tyrosine recombinase XerD [Acidovorax delafieldii 2AN] gi|241363726|gb|EER59095.1| tyrosine recombinase XerD [Acidovorax delafieldii 2AN] Length = 299 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 44/296 (14%), Positives = 92/296 (31%), Gaps = 29/296 (9%) Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITT 116 + + T + + + LA N+ ++ Sbjct: 2 LAASLAAIDTFVDAL--WLED----GLARNTLAAYRRDLTLYATWLAQQQPALALDSTAE 55 Query: 117 KHIRSGVESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 H+++ R +SA + LT +R F WA+R+ ++ +P + ++ ++ + Sbjct: 56 HHLQAYFAERHAQTRATSANRRLTVLRRYFHWALRERRISADPTVRLQAARQPLRVPKTL 115 Query: 175 TKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT- 229 ++ ++ + GS + R E + SGLR ++ L ++ Sbjct: 116 SQAQVEALLNAPDVGSALGLRDRTMLELMYASGLRVTELVTLKTYQLGLAEGVLRVMGKG 175 Query: 230 GTIITVELPDGFMKLLAMTPI----------GKETFFINNDKQKMNATQFSIWFKAKATK 279 V + + + F+ + M F + K A Sbjct: 176 SKERLVPFGEEARNWIERYLHEARGAILGGQQTDDLFVTHRGAGMTRVMFWVIVKKWAAV 235 Query: 280 AGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 AG+ S H +R AT + GA + G + YT A + Sbjct: 236 AGITVPLSPHTLRHAFATHLLNHGADLRVVQLLLGHVDISTTTIYTHVARERLKAL 291 >gi|225012642|ref|ZP_03703077.1| integrase family protein [Flavobacteria bacterium MS024-2A] gi|225003175|gb|EEG41150.1| integrase family protein [Flavobacteria bacterium MS024-2A] Length = 298 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 41/290 (14%), Positives = 97/290 (33%), Gaps = 37/290 (12%) Query: 85 GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRKHTP---SSAIQFL 137 +++++ +++S +Q +++ IRS + S + + + Sbjct: 14 KKSSLHTQKAYQSNLEQFEAFLLSEGSKASLEEVSYSEIRSWIVSLIQKGNSTRTVNRKI 73 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-----FKSFWSEGSQP 192 + +R +K+ +R + +P + K T+ P++++++ Q G Sbjct: 74 SVLRSYYKFLMRTGSIDSSPLKEHKALKMATQVQLPFSQDEVAQLLDSGHFPDSYLGVLQ 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLAMTPIG 251 + Y+G+R S+ + ++ + K + L L + Sbjct: 134 KTILSLFYYTGIRRSELIELKLLNVDLSKGLIKVLGKRNKERLIPLLPEIKVELQLMLDC 193 Query: 252 KETFFINND-------------KQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISA 298 + I+ + + +F +TK +S H +R AT Sbjct: 194 QVRNNIDREEGLFFTTQQGFKLTDSFVYATVNDYFSKVSTKT--KRSPHVLRHSFATHLL 251 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 D GA + + G ++ + YT + +I V S P Sbjct: 252 DQGADLNSIKDLLGHSSIAATQHYTHSS---------MAKIKEVYKSAHP 292 >gi|254488719|ref|ZP_05101924.1| tyrosine recombinase XerD [Roseobacter sp. GAI101] gi|214045588|gb|EEB86226.1| tyrosine recombinase XerD [Roseobacter sp. GAI101] Length = 324 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 44/308 (14%), Positives = 101/308 (32%), Gaps = 42/308 (13%) Query: 74 LISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRS---GVESRK 127 IS + ++ + N+++++ D+ + T + +++ Sbjct: 8 WISTFLEAQAAELGASTNTQLAYGRDLKDFDSFLAGRHLDFARATRDDVERYLVWCDAQG 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 S+ + L++++ ++++A + + + NP + + P + + ++ ++ + Sbjct: 68 LAKSTRARRLSAIKQIYRFAFEESWRSDNPAIQISGPGQDKRLPKILSEHEVDRLLEAAR 127 Query: 187 ------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD 239 E + E L +G+R S+ V + + + K V L Sbjct: 128 GSGRNLHEKLRNTCLMELLYATGMRVSELVSLPVSATRGDPRLLLIMGKGNKERLVPLSP 187 Query: 240 GFMKLLAMTPIGKETFFINNDKQKM----------------NATQFSIWFKAKATKAGVN 283 L I ++ +K +F + K A GV+ Sbjct: 188 PARVALTDWLIARDQIDAAAQAKKQPASRFLFPSRGVAGYLTRHRFYLMIKEFAVAGGVD 247 Query: 284 ---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 + H +R AT GA + G V E YT + R+S Sbjct: 248 PSKVTPHTLRHAFATHLLANGADLRAIQTMLGHADVATTEIYTHVLE---------ARLS 298 Query: 341 SVVDSDDP 348 +V + P Sbjct: 299 ELVLENHP 306 >gi|77165718|ref|YP_344243.1| tyrosine recombinase XerD [Nitrosococcus oceani ATCC 19707] gi|254433312|ref|ZP_05046820.1| tyrosine recombinase XerD [Nitrosococcus oceani AFC27] gi|76884032|gb|ABA58713.1| Tyrosine recombinase XerD [Nitrosococcus oceani ATCC 19707] gi|207089645|gb|EDZ66916.1| tyrosine recombinase XerD [Nitrosococcus oceani AFC27] Length = 305 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 48/280 (17%), Positives = 95/280 (33%), Gaps = 24/280 (8%) Query: 75 ISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR---KH 128 + + + LA N+ ++ ++ R + + + + R Sbjct: 16 LERFLNALWLEEGLAENTLAAYRRDLERFSRWLHSQGRTLIGAQREDLLAYLAHRLEGGD 75 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187 S + ++S+R +++ + ++ +P VE P+ ++E+++ + Sbjct: 76 KSRSVARSVSSLRRFYRYLMGEKIRDNDPSDRVESPRLGRLLPESLSEEEVEALLAAPKT 135 Query: 188 ---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFMK 243 G + R E L +GLR S+ + L + K V L + + Sbjct: 136 EDSLGLRDRTMLETLYATGLRVSELVNLTLPQLNPRQGVVYLSGKGNKERLVPLGEVALS 195 Query: 244 LLAMTP----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291 L E F+ M+ F K A ++G+ K S H +R Sbjct: 196 WLDRYCREARLGLVRSQVNEILFLTRRGGAMSRQAFWYLIKRYARQSGIQKALSPHTLRH 255 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 AT + GA + G + + YT A R RL Sbjct: 256 AFATHLLNHGADLRVVQILLGHADLSTTQIYTHVA-RARL 294 >gi|332186915|ref|ZP_08388656.1| phage integrase family protein [Sphingomonas sp. S17] gi|332012925|gb|EGI54989.1| phage integrase family protein [Sphingomonas sp. S17] Length = 357 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 74/352 (21%), Positives = 129/352 (36%), Gaps = 22/352 (6%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLP-YPHESTFIPAYMSALTGSTPKREYIN 62 R VT RHGK+ FRK + + P E F Y + L R I Sbjct: 2 KTRY-KNVTVNPDRHGKLRARFRKTGRPAVYMKHLPDEKGFKEEYEALLAN----RPLIV 56 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSL-AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121 P ++ L+S Y S + ++ + D + D +HI + Sbjct: 57 VRPAVPGSVGDLVSRYYASGDFKGRGTAETQARRKYLIDSFRQDVADDLVSDFGFEHIEA 116 Query: 122 G------------VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT- 168 + +A++ +R LF +A + +++ NP ++ Sbjct: 117 ILLARTEKRWDETRKRMMGGEVAAVKLRKELRRLFAYAKKLKWIEQNPVEEAAPIGKQKL 176 Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228 G WT++++ QFK+ G++ RLA E +L++G R D+ G H+ + K Sbjct: 177 TGFHTWTEDEISQFKARHPIGTRARLALEIMLWTGQRRGDARLFGPAHVVRGKINFTAAK 236 Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK-MNATQFSIWFKAKATKAGVN-KSA 286 + + + + + F+ K F + +AG+ +A Sbjct: 237 NQADLWLPIAPDLRRAIDAMDSIGLRTFLVTTAGKTFTKDGFGNKMREWCDEAGLPQCTA 296 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338 HG+RK A + AT E+ A GWK + YT A++ L R Sbjct: 297 HGLRKAIGRRMAQSQATQLEIKAVGGWKGDSEVAIYTAAAEQEGLADGAMSR 348 >gi|254303771|ref|ZP_04971129.1| possible integrase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323963|gb|EDK89213.1| possible integrase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 353 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 53/355 (14%), Positives = 111/355 (31%), Gaps = 38/355 (10%) Query: 13 KERTRH---GKIIYYFRKG----HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65 KE+ + G+ F +RI + Y K+ +++ Sbjct: 5 KEKIKGEYTGRWNARFTIKLLNNKSKRIFKRGFNSKKEALEY--------EKKVILDNSL 56 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 K ++++ + + + ++ + + I + IT I + Sbjct: 57 GSNIPFKVAVNQHLEFKKLR-IKELTYMNMSNILNSI-TYFDNLLISDITPIQISNFQND 114 Query: 126 --RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 RK+ SS +++LF W VR + + NP V+R K +T+ D Sbjct: 115 LLRKYKGSSIRTINAYVKMLFTWCVRYKNLTSNPFDMVDRLKLETKKRMDIITVDEFNQI 174 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI----------------FSIKTQ 227 +L F+ L ++GLR ++ + + N + Sbjct: 175 VEQVNNPDMKLMFKLLFWTGLRIGEARALKIDDIDFNNKTISVTKSYTNLSGKSIITTPK 234 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSA 286 G+I +++ D + + + +N + N + FK G + Sbjct: 235 TKGSIRVIKIDDVLLSEIKDYIDKAKYILDDNFIFRFNKASYRYNFKNATIKVLGRDLRV 294 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLGIKNSRRI 339 H +R A+ + G + G Y+ DR I ++ Sbjct: 295 HDLRHSHASFLINNGVDILLISKRLGHSNTAMTLNVYSHLYPDRENEAINLINKL 349 >gi|154500802|ref|ZP_02038840.1| hypothetical protein BACCAP_04487 [Bacteroides capillosus ATCC 29799] gi|150270302|gb|EDM97628.1| hypothetical protein BACCAP_04487 [Bacteroides capillosus ATCC 29799] Length = 409 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 51/367 (13%), Positives = 113/367 (30%), Gaps = 47/367 (12%) Query: 14 ERTRHGKIIYYFRKG----HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 + +G+ + +G GR I+ + A + +N + Sbjct: 13 RKKPNGRWEGRYTQGIDPNTGRAIQKSVSARTQAECKEKLAKAIRDNRGIPVNH--NEDY 70 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH 128 T+ + ++ + N+ ++E+ + I+ G +++T I+ K Sbjct: 71 TVAEWCRLWFETYSKPVIRPNTAKTYENMIENHIVPAIGGVKLKRLTAIQIQKMYNDSKT 130 Query: 129 ---------------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 + S+ + + K AV++ + NPC + P ++ + + Sbjct: 131 NGRVQRFEKKTDTALSGSTVRRIHMVLSSALKQAVKERIIPYNPCDNCRIPPKEKKEMAI 190 Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ----------------HL 217 E + + S + + F L SGLR + + Sbjct: 191 IPSEKLGVYLSEAEKYGVLPMFFLE-LSSGLRRGELLALRWDDLNVKDRILSVSKQVTRI 249 Query: 218 QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK----MNATQFSIWF 273 + + + ++ V L + +L I + + S Sbjct: 250 DGELVITEPKTKNSVRKVALSQQAVDILVREHEQHPDNPILFPSPRTGGYWSPDAVSRIN 309 Query: 274 KAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA-DRI 329 + KAG+ H +R AT++ +G L + G + +TYT D Sbjct: 310 RKLLAKAGIEERVRFHDLRHTFATMALSSGVDVKTLSSMLGHYSAGFTLDTYTHITNDMQ 369 Query: 330 RLGIKNS 336 R + Sbjct: 370 RGAAEKI 376 >gi|91791760|ref|YP_561411.1| tyrosine recombinase XerC [Shewanella denitrificans OS217] gi|91713762|gb|ABE53688.1| Tyrosine recombinase XerC [Shewanella denitrificans OS217] Length = 321 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 36/298 (12%), Positives = 86/298 (28%), Gaps = 43/298 (14%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-----------------------GDFDY 111 Y S L+ + ++ + D + Sbjct: 10 FERYLTSE--RQLSPYTVRNYLFELRRAEPYLFTTLSLPEYAAQTSQTNAITSPQTDEQW 67 Query: 112 RKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168 ++ + +++ + +P S L++++ F++ + ++ + NP + PK+ Sbjct: 68 LALSHEALQALLAKLHRQGLSPRSLSLCLSALKQFFEYLLAEDCITHNPAKGLSAPKQAK 127 Query: 169 EGIRPWTKEDMQQFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSI 224 + + + + + + R E SGLR + + Sbjct: 128 PLPKNIDVDAISHLLAIDGDDPLVIRDRAIMELFYSSGLRLGELASLNYGDIHLGLQEVK 187 Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGK--------ETFFINNDKQKMNATQFSIWFKAK 276 K G V + M+ LA+ + F++N ++++ Sbjct: 188 VLGKGGKERRVPVGKLAMEALALWHTQRLLLVQADEPALFVSNQGKRLSHRSIQARMAKW 247 Query: 277 AT--KAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 V H +R AT ++ + G + + YT D L Sbjct: 248 GQNQALSVPVHPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYT-SLDFQHLA 304 >gi|307691997|ref|ZP_07634234.1| Phage integrase [Ruminococcaceae bacterium D16] Length = 409 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 55/367 (14%), Positives = 109/367 (29%), Gaps = 47/367 (12%) Query: 14 ERTRHGKIIYYFRKG----HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 R +G+ + +G GR I+ + A + +N + Sbjct: 13 RRKPNGRWEGRYTQGIDPNTGRAIQKSVSARTQAECKEKLAKAIRDNRGIPVNH--NEEY 70 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH 128 T+ + ++ + N+ ++E+ + I+ G +++T I+ K Sbjct: 71 TVAEWCRLWFETYSKPVIRPNTAKTYENMIENHIVPAIGGVKLKRLTAIQIQKMYNDSKT 130 Query: 129 TPS---------------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 + + + + K AV++ + NPC + P ++ + + Sbjct: 131 SGRVQRFERKTDTALSGSTVRRIHMVLSSALKQAVKERIIPYNPCDNCRIPPKEKKEMTI 190 Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI- 232 E + + S + F L SGLR + L + K T Sbjct: 191 IPPEKLGVYLSEAEKYGVL-PMFYLELSSGLRRGELLALRWDDLNVKDRILSVSKQVTRI 249 Query: 233 ---------------ITVELPDGFMKLLAMTPIGKETFFINNDKQK----MNATQFSIWF 273 V L + LL I + + S Sbjct: 250 DGELVVTEPKTKNSVRKVALSQQAVALLVQEHEQHPDSPILFPSPRTGGYWSPDAVSRIN 309 Query: 274 KAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA-DRI 329 + KAG+ H +R AT++ +G L + G + +TYT D Sbjct: 310 RKLLAKAGIEERVRFHDLRHTFATMALSSGVDVKTLSSMLGHYSAGFTLDTYTHITNDMQ 369 Query: 330 RLGIKNS 336 R + Sbjct: 370 RGAAEKI 376 >gi|299538024|ref|ZP_07051310.1| integrase-recombinase protein [Lysinibacillus fusiformis ZC1] gi|298726606|gb|EFI67195.1| integrase-recombinase protein [Lysinibacillus fusiformis ZC1] Length = 298 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 45/264 (17%), Positives = 91/264 (34%), Gaps = 12/264 (4%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHT 129 + +++EY S + A + + S+ ++ + + +T++ + V Sbjct: 21 RKILNEYLLSLKLANKAEATISKYRSFLERFCSEC-LVELDSLTSEDVLKWVNKFSVGKK 79 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-WSE 188 S+ I L+ + FK+ + ++Y+ PK R T+++ + K Sbjct: 80 ESTVINVLSILSSFFKFCLAEDYMDSIVMRKRWVPKLPQPLPRFLTEQEYARVKMASEQL 139 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAM 247 + R FL SG R S+ +Q++ + K I V +L Sbjct: 140 SLRDRAIVLFLFTSGCRRSEVANLLIQNVDVKQRTAEVRGKGKKIRKVHFSVECALVLKD 199 Query: 248 TPIGK-----ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADA 300 + E F+N +K+ + AG+ +S H R AT Sbjct: 200 YLWTRSGVATEPLFLNKYGEKLQQSGIYEITTKLGRLAGLEQSLHPHCCRHTFATNMLAK 259 Query: 301 GATAHELMATYGWKTVDQAETYTK 324 GA + G ++ Y + Sbjct: 260 GAELEFIADEMGHTNLNTTRVYAR 283 >gi|227495065|ref|ZP_03925381.1| possible integrase/recombinase [Actinomyces coleocanis DSM 15436] gi|226831517|gb|EEH63900.1| possible integrase/recombinase [Actinomyces coleocanis DSM 15436] Length = 302 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 41/281 (14%), Positives = 98/281 (34%), Gaps = 29/281 (10%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITT-----KHIRSGVESRKHTPS 131 + + + + +++ ++E+ + G+ + I + S + H + Sbjct: 15 WLEH--FRGFSTHTQRAYENDVKAALEYCFGNDPFTPIDFNSQALRSFLSNRIRKGHARA 72 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE--- 188 S ++ S+R+ WA++Q ++ +P L ++ K + + E + Q + E Sbjct: 73 SVARYAASLRLFSSWALKQGHLNSDPSLKLKTAKVDNHLPQVLSLEQINQLFNHLVETAQ 132 Query: 189 -----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 + E L G+R ++ + + + +++ V + Sbjct: 133 TGNVNAIRDWATSELLYSCGIRVAELVGLNLTSVDGSNRTLRVIGKGNKERLVPFGTPAL 192 Query: 243 KLLAMTPIGKETFFINNDKQ----------KMNATQFSIWFKAKATKAGVN-KSAHGVRK 291 + L +N +++ + +AGV S HG+R Sbjct: 193 ESLRAWVTQGRPQLVNERSGQALFLGSRGGRIDQRIVRECLEKACVQAGVPVLSPHGLRH 252 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 +AT + GA + G ++ + YT D +RL Sbjct: 253 CAATHMLEGGADLRTVQDMLGHASLATTQRYTH-VDAVRLS 292 >gi|148285154|ref|YP_001249244.1| site-specific tyrosine recombinase XerC [Orientia tsutsugamushi str. Boryong] gi|146740593|emb|CAM81243.1| tyrosine recombinase XerC [Orientia tsutsugamushi str. Boryong] Length = 312 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 40/282 (14%), Positives = 93/282 (32%), Gaps = 28/282 (9%) Query: 71 LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDF-DYRKITTKHIRSGVESRKH 128 L+ +I+E+ + + ++N+ S+ + Q + D+ + ++ T H+ S Sbjct: 7 LEKIITEWLNHLKNYKNYSINTCNSYNNDLQQFLNFIVDYCNLSELKTSHLCSVDIRLMR 66 Query: 129 TPSSAIQFLTS-----------MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW--- 174 + S L +R +K+ +Q + +V PK + Sbjct: 67 SWLSQRYNLQYNSSSNSRALSSVRNFYKYLFKQHNLVNKIISAVRSPKLAKRLPKALDIE 126 Query: 175 ----TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV------QHLQNNIFSI 224 ++ + G++ + L GLR S++ + + Sbjct: 127 DTVACTTEINNIANDKWIGARDKALLFLLYGQGLRISEALSVTKVSLKSESLIIKGKGNK 186 Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN- 283 IT +L ++ L+ + F+ +K+ F + + Sbjct: 187 IRLIPWLDITKQLVSDYVNLVPYSLTENSPLFVGKRGKKLQPAVFGRHLIKLRRQLNLPE 246 Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + H R A+ + GA + G +++ + YTK Sbjct: 247 SLTPHTFRHCFASHLLNNGADLRSIQELLGHQSLSSTQIYTK 288 >gi|298529953|ref|ZP_07017355.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] gi|298509327|gb|EFI33231.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] Length = 312 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 42/300 (14%), Positives = 93/300 (31%), Gaps = 30/300 (10%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSG---VES 125 + + + + ++ Q + I + + + Sbjct: 12 ATAFLAHLDVEKGFSGATLQAYSKDLLQWEEFLQTRNKTCASPQDIVRADVHAFLVQMHK 71 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + SS + L+S+R F++ +Q+ + NPC V PK++ + + Sbjct: 72 LNLSKSSMARKLSSLRTFFRFLQKQKIIQQNPCTGVRNPKQEKPQPGVLNVDQALEMVQA 131 Query: 186 W----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDG 240 ++ E L SGLR S++ + + ++ Q L Sbjct: 132 QLEPSPRNTRDLALAEVLYGSGLRVSEALSLDLDDVDQGQSLVRVQGKGRKERLAFLTRP 191 Query: 241 FMKLLAMTPIGKETFFIN---------NDKQKMNATQFSIWFKAK----ATKAGVNKSAH 287 ++ L+ + F + +++ + + A GV S H Sbjct: 192 GLERLSQYIALRHAFEPDLREKALFLGMRGGRLHRREAVRIIQRLGQIFARAQGV--SPH 249 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISSVVDSD 346 +R AT AGA + G + + YT D++ + ++ D + Sbjct: 250 TLRHSFATHMLQAGADLRIVQELLGHSRISTTQRYTHLNLDQVMQTYDKAHPLAREKDKN 309 >gi|288941805|ref|YP_003444045.1| tyrosine recombinase XerC [Allochromatium vinosum DSM 180] gi|288897177|gb|ADC63013.1| tyrosine recombinase XerC [Allochromatium vinosum DSM 180] Length = 320 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 36/282 (12%), Positives = 83/282 (29%), Gaps = 25/282 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVESRK 127 I + L+ ++ ++ +QI G + IR R Sbjct: 19 IERFLAHLAHERQLSEHTVRAYRHDLNQIAVWLADQGEPGAEPIASLDEAGIRRYTAWRH 78 Query: 128 H---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + + + L+S+R ++W +R+ NP + + PK + + + + Sbjct: 79 RQGVSGKTLQRELSSLRGFYRWLLRENQAVANPAVGLRAPKSPRKLPHTFDADQLGALLD 138 Query: 185 FWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDG 240 E + E SGLR ++ + + + K V + Sbjct: 139 PVDEDPLMIRDTAMVELFYSSGLRLAELVSIDLGDIDMSEGELGVIGKGSKSRRVPVGRK 198 Query: 241 FMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGVR 290 + + + F++ +++ A + G + H +R Sbjct: 199 AREAIERWLAVRSALADRDERALFVSLRGGRIHPRTVEKRLARWAVERGASRHLHPHLLR 258 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 A+ ++ + G + + YT D L Sbjct: 259 HSFASHLLESSGDLRAVQELLGHTDIGTTQIYTH-LDFQHLA 299 >gi|118590571|ref|ZP_01547973.1| site-specific tyrosine recombinase XerC [Stappia aggregata IAM 12614] gi|118437034|gb|EAV43673.1| site-specific tyrosine recombinase XerC [Stappia aggregata IAM 12614] Length = 319 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 36/289 (12%), Positives = 79/289 (27%), Gaps = 30/289 (10%) Query: 75 ISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD--------FDYRKITTKHIRSGVES 125 + ++ L+ + +++E Q +R + + + R + S Sbjct: 23 VDQWLDHLSDERRLSDKTLLAYERDLRQFLRFLTNHLGGAPDLKEIAALRPADFRGFLAS 82 Query: 126 RKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ- 181 R+ S + L +R ++ R+ V +V P++ +P + +D Sbjct: 83 RRRDGVQSRSLARGLAGIRSFLRFLERRGEVNAAASAAVRPPRQARSLPKPVSSKDAIDV 142 Query: 182 ------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--IKTQKTGTII 233 +S ++ L GLR S++ K G Sbjct: 143 TSGELAMESEPWLEARNAAVLTLLYGCGLRISEALSLTGAMAPRTGTKTLRVVGKGGKER 202 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGVN--K 284 V + + + +N + G+ Sbjct: 203 IVPILPAVCQAVEHYLKLCPYAISPGGPLFLGARGGPLNPRMIQLAMARLRGALGLPDSA 262 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 + H +R AT G + G ++ + YT+ L Sbjct: 263 TPHALRHSFATHLLAGGGDLRTIQELLGHASLASTQIYTEIDSAHLLAA 311 >gi|167772802|ref|ZP_02444855.1| hypothetical protein ANACOL_04184 [Anaerotruncus colihominis DSM 17241] gi|167665280|gb|EDS09410.1| hypothetical protein ANACOL_04184 [Anaerotruncus colihominis DSM 17241] Length = 402 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 53/365 (14%), Positives = 93/365 (25%), Gaps = 42/365 (11%) Query: 1 MTPSLRLPPFVTKERTRHGKI--IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKR 58 M + ++R G+ Y T + L Sbjct: 1 MAKRRPSGDGMVRKRE-DGRWEGRIVVGHKQNGEPIFRYVLAKT-QKELLDKLHRDLEAF 58 Query: 59 EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTK 117 + + TL + + + +L N+ S+E + I G+ ++T Sbjct: 59 QDVELTEDSRMTLGEWLDRWMEDYGAATLRPNTLRSYEQFIRCYIKPYLGNKIVSRVTRM 118 Query: 118 HIRSGVESRKHTPS--------------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163 I+ KH ++ + K A +A NP Sbjct: 119 DIQKLYRKLKHEGRVREHPEHGHELSDTMVLRIHAMLHRCLKDAEAAHVIARNPTDGAVV 178 Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--- 220 PK + TKE M+ F + R F L +GLR + C Q Sbjct: 179 PKANHRPKQILTKEQMETFLAAVERNEIWRDFFYTELTTGLRRGEICGLMWQDFDEKAGT 238 Query: 221 ------------------IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262 + + + ++ Sbjct: 239 LKILRSVNVPKAGELEIGETKTSQGRRTIRLPPSTVQRLRERKQHAVSQWIFPEPLAPEK 298 Query: 263 KMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAE 320 + + W K +AG+ H +R AT + +G A L G + Sbjct: 299 PVRPSAAYYWMKRILREAGLPTIRFHDLRHTFATHALTSGVDAKTLSGILGHTNASFTLD 358 Query: 321 TYTKG 325 TYT Sbjct: 359 TYTHV 363 >gi|241663999|ref|YP_002982359.1| site-specific tyrosine recombinase XerD [Ralstonia pickettii 12D] gi|240866026|gb|ACS63687.1| tyrosine recombinase XerD [Ralstonia pickettii 12D] Length = 298 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 48/283 (16%), Positives = 86/283 (30%), Gaps = 24/283 (8%) Query: 72 KWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRK- 127 I + + LA N+ ++ + + +R Sbjct: 6 ADAIQRFCDALWLEDGLARNTLDAYRRDLTLYAHWLAARGKSIAETEDGDLADYFAARHA 65 Query: 128 -HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 SSA + T + F+WA+R+ V+ +P + K+ + ++ ++ + Sbjct: 66 ESRASSANRRRTVFKRFFQWALREHVVSTDPSRLLPTAKQPPRFPKTLSETQVEALINAP 125 Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDG 240 + + R E + SGLR S+ + + + K G V Sbjct: 126 DVDTPLGLRDRAMIELMYASGLRVSEIVALKTVEVGLNEGVVRVVGGKGGKDRLVPFGAE 185 Query: 241 FMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHG 288 L T F+ + M F K A A + S H Sbjct: 186 AGDWLRRYLRDGRTALLGERTADALFVTARGEGMTRQAFWYLIKRYALLADIHAPLSPHT 245 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +R AT + GA + G + + YT A R RL Sbjct: 246 LRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVA-RERL 287 >gi|329297033|ref|ZP_08254369.1| site-specific tyrosine recombinase XerC [Plautia stali symbiont] Length = 303 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 39/279 (13%), Positives = 86/279 (30%), Gaps = 21/279 (7%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGVESRKHT 129 + + + L+ ++ +++ +I + D ++ +RS + Sbjct: 10 AVEGFLRYLKVERQLSPLTQKNYQRQLQALIAMADDMHITAWSQLEPAQVRSLAARSRRG 69 Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE---DMQQFK 183 SS ++++R W V Q ++ NP + P+ + + + Sbjct: 70 GLGASSLALRMSALRSFLDWQVSQGMLSANPAKGIATPRNARHLPKNMDVDEVSQLLDID 129 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFM 242 + R E + GLR ++ +HL + K V + + Sbjct: 130 LDDPLAVRDRAMLETMYGGGLRLAELVGIDCRHLDLESGEVWVRGKGSKERRVPIGGTAV 189 Query: 243 KLLAMTPIGKETFFINN-------DKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293 L + +F + +++A F K GV + H +R Sbjct: 190 TWLQHWLPLRNSFAPQDDAVFVSTRGSRISARNVQKRFAEWGIKQGVASHIHPHKLRHSF 249 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 AT ++ + G + + YT D L Sbjct: 250 ATHLLESSGDLRAVQELLGHVNLSTTQIYTH-LDFQHLA 287 >gi|269219629|ref|ZP_06163483.1| integrase/recombinase XerC [Actinomyces sp. oral taxon 848 str. F0332] gi|269210871|gb|EEZ77211.1| integrase/recombinase XerC [Actinomyces sp. oral taxon 848 str. F0332] Length = 303 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 40/293 (13%), Positives = 90/293 (30%), Gaps = 30/293 (10%) Query: 71 LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGD---------FDYRKITTKHIR 120 + + Y + L+ N+ ++ ++ + D R + +R Sbjct: 3 IDETLDAYERELRLRRGLSENTVAAYVREARSLLEFIWEIAGGDVEEPMDLRGLELADVR 62 Query: 121 SGVES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 + + + + S+ + S+R +W R+ + ++ ++ P+ R +E Sbjct: 63 AWLARSQAKGRSRSTLARHSASIRTFCRWLHRKGHTDVDAAARLKAPRADNALPRVLNQE 122 Query: 178 DMQQFKSF--------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229 ++ + A E L SG+R + C V L + K Sbjct: 123 QARRLAEHAGRLAASGDPLALRDHAAVELLYASGIRIGELCSLDVDSLGADSTLRVIGKG 182 Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKAG 281 V + L + + ++ +++ A AG Sbjct: 183 DKERIVPFGVPARRALTAYLPARAQLLVRPNRALFLGARGGRLDPRTLRKTIHRLAASAG 242 Query: 282 VN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 V S H +R +AT D G+ + G ++ + YT + Sbjct: 243 VPDISPHDLRHSAATHLLDGGSDLRTVQEILGHASLGTTQRYTHVSSERLRAA 295 >gi|254520658|ref|ZP_05132714.1| phage integrase [Clostridium sp. 7_2_43FAA] gi|226914407|gb|EEH99608.1| phage integrase [Clostridium sp. 7_2_43FAA] Length = 400 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 53/391 (13%), Positives = 116/391 (29%), Gaps = 60/391 (15%) Query: 1 MTPSLRLPPFVTKERTRHGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGST 55 M+ V K ++G + R G+ IR + ++ + + Sbjct: 15 MSKKANGEGSVNKY--KNG---WRATITIGRNSEGKLIRKQFYGKTKL--EVLKKVDDFK 67 Query: 56 PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK--SGDFDYRK 113 K S + TT++ I + + ++ + + I G + Sbjct: 68 VKNTLGLSTIDEKTTVQQWIKMWLEEYKMNECRPSTIDRYFGIYRNYIENTNLGVVKLKD 127 Query: 114 ITTKHIRSGVESRKHTPS----SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169 + +++ + + + + A +++ + NPCL V PK K + Sbjct: 128 LKPLTLQNYYNELIKKKNKTTDTIKIINKVLSGGMRQAQKEQLILNNPCLFVTLPKSKVK 187 Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229 + Q+ E S+ R F L SGLR + + + +K K+ Sbjct: 188 EEVMTFTMEEQRIFLNAIEDSRDRCIFNLALGSGLRLGELLALKWSDIDFSSNEVKVSKS 247 Query: 230 GTIITVELPDGFMK---------------------------------LLAMTPIGKETFF 256 + + K +L + + + Sbjct: 248 VKRVKCFDENTNTKTKIIEQLPKTRYSERKIPLPKATINELKRHKNIILQEKLMAGDIYI 307 Query: 257 INNDKQKM------NATQFSIWFKAKATKAGVNKS-AHGVRKFSATISADAGATAHELMA 309 NN +A + +K+ KA + H +R AT + G + + Sbjct: 308 DNNLVFPNVLGGYIDARNLTKRYKSILNKANIPYRKFHALRHTYATRLFENGVSLKVIQV 367 Query: 310 TYGWKTVDQAE-TYTKGADRIRL-GIKNSRR 338 G ++D YT + ++ + + Sbjct: 368 LLGHSSMDITANIYTHVLPKEKIRAVDVLDK 398 >gi|222150032|ref|YP_002550989.1| site-specific tyrosine recombinase XerC [Agrobacterium vitis S4] gi|221737014|gb|ACM37977.1| site-specific tyrosine recombinase XerC [Agrobacterium vitis S4] Length = 322 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 43/283 (15%), Positives = 83/283 (29%), Gaps = 30/283 (10%) Query: 78 YRKSAH-WGSLAVNSRISFESYFDQIIRK----SGDFD----YRKITTKHIRSGVESRKH 128 + S LA ++ ++E Q + G + + +R+ + SR+ Sbjct: 30 WLASLSGQRRLADHTLTAYERDTRQFLGFLTGYFGGPPSIDDIKALRPSDLRAFLSSRRK 89 Query: 129 TPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED------- 178 + A + L +R L ++ R+ V ++ PK+ +P + Sbjct: 90 EGAGARSLGRHLAGVRSLLRYLERKGLVNAAGAGAIRSPKQPKSLPKPLSAAQALTVVAA 149 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV-QHLQNNIFSIKTQKTGTIITVEL 237 Q ++ F L GLR S++ + T K V L Sbjct: 150 ETQLNEEPWIAARDAAVFALLYGCGLRISEALDLTPADIVATTTTLRVTGKGNKTRLVPL 209 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQ-------FSIWFKAKATKAGVN--KSAHG 288 + + + A + + G+ + H Sbjct: 210 LPIVRQAVESYQSLCPYHLPATEPLFRGARGGKLQQGIIQREMQRLRSALGLPDTATPHA 269 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +R AT G + G ++ + YT G D RL Sbjct: 270 LRHSFATHLLSGGGDLRTIQELLGHASLSTTQIYT-GVDSARL 311 >gi|190410733|ref|YP_001966071.1| putative integrase [Thermus sp. 4C] gi|148608607|gb|ABQ95627.1| putative integrase [Thermus sp. 4C] Length = 386 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 55/306 (17%), Positives = 103/306 (33%), Gaps = 36/306 (11%) Query: 72 KWLISEYRKSAHWG-SLAVNSRISFESYF----DQIIRKSGDFD-YRKITTKHIRSGVES 125 L + +R+ + + + + G + ++ ++HIR+ + S Sbjct: 82 AELFARFRRYLEMEEGRSPRTAKEYLMDAGLFARWFRERHGRPPRFEEVGSQHIRAFLAS 141 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQFK 183 R+ +P A + L S+R LF++ E + +P V+RPK T ++ + Sbjct: 142 REVSPHRAGRVLASLRKLFRYLAEVEGLPLLKDPTEGVKRPKLPRRLPVYLTPPEVARLL 201 Query: 184 SFWSEGSQPRLAFEFL------LYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTII 233 + PR+A +GLR S++ L K G Sbjct: 202 QAAYQNRSPRVALRDWALLAFLYGTGLRLSEALALTYADLTYQDGIPHAIRVQGKGGKER 261 Query: 234 TVELPDGFMKLLAMT------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 V L + L P N + +A K A +AG Sbjct: 262 VVVLSPTAQRALHQWLKHRNLEGHPTSPYIWSHTTGPNRGKPFSARAVEAMVKRVARRAG 321 Query: 282 VN----KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 + + H +R A+ +AG E+ G ++ + Y R RL + +R Sbjct: 322 LKDWRRITPHKLRHSYASALVEAGRGIDEVKELLGHSSISTTQVYVH-VSRKRL-EEAAR 379 Query: 338 RISSVV 343 + V+ Sbjct: 380 ALPEVL 385 >gi|49474762|ref|YP_032804.1| site-specific tyrosine recombinase XerC [Bartonella quintana str. Toulouse] gi|49240266|emb|CAF26736.1| Integrase /recombinase xerC [Bartonella quintana str. Toulouse] Length = 322 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 39/279 (13%), Positives = 83/279 (29%), Gaps = 30/279 (10%) Query: 82 AHWGSLAVNSRISFESYFDQI----IRKSGDFD----YRKITTKHIRSGVESRK---HTP 130 +A ++ ++E Q + G + +R+ + R+ + Sbjct: 34 LQTRRMATHTAQAYERDTRQFLSFLCQHLGHKPTFHDLANLRVTDLRAYLAYRRTLNISA 93 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE-------DMQQFK 183 S + + +R F + R+ V+I V PK +P + Q + Sbjct: 94 RSLSRGMAGLRSFFNYLSREGIVSIPASKLVRTPKYSKSLPKPLAIKSALHVVKQENQQE 153 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--IKTQKTGTIITVELPDGF 241 + ++ L G+R S++ + + + T K G V L Sbjct: 154 NESWIIARNAAVLILLYGCGMRISEALALTPEQFSDPEKTSLFVTGKGGKTRLVPLIKVV 213 Query: 242 MKLLAMTPIGKETFFINNDKQ-------KMNATQFSIWFKAKATKAGVN--KSAHGVRKF 292 + + + N ++ + + G+ + H +R Sbjct: 214 YETIQNYLKCCPYPLVENQPMFRGARGGPLHPAIIQRTVRNLRSSLGLPETATPHSLRHS 273 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 AT G + G ++ + YT D RL Sbjct: 274 FATHLLSRGGDLRTIQELLGHASLSTTQIYTH-VDTDRL 311 >gi|146296950|ref|YP_001180721.1| site-specific tyrosine recombinase XerC [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410526|gb|ABP67530.1| phage integrase family protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 328 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 42/287 (14%), Positives = 91/287 (31%), Gaps = 45/287 (15%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDY-------------------------RKITTKHI 119 + + N+ + +R D + +T ++ Sbjct: 21 KNKSPNTIKEYYYDLRTFLRYLKAKDLNILSQIEKIEDLENIDVSNFEIERLKTLTLSNL 80 Query: 120 RSGVESRKHT----PSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPW 174 P + + + S+R FK+ + + + NP +E PK R Sbjct: 81 YEYFSFLATRFNNGPYARARKVASIRSFFKYLYSKAKLIPDNPAKDLESPKLGKRNPRYL 140 Query: 175 TKEDMQQFKSFWS--EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 T ++ ++ S + L GLR S+ + +++++ I + Sbjct: 141 TLDESKKLLSAIDGENKERDFAIITLFLNCGLRLSELVNINLSDIKDDMLRIVGKGN-KE 199 Query: 233 ITVELPDGFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGV-- 282 + L + + + T F++ K++++ + AG+ Sbjct: 200 RIIYLNKACKEAIENYLKVRPTEGVKDKDALFLSERKKRISRRTVQYIVEKYVKMAGINQ 259 Query: 283 -NKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD 327 SAH +R +AT+ G L G +++ E YT D Sbjct: 260 KKISAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVND 306 >gi|138894733|ref|YP_001125186.1| site-specific tyrosine recombinase XerC [Geobacillus thermodenitrificans NG80-2] gi|134266246|gb|ABO66441.1| Integrase/recombinase (XerC/CodV family) [Geobacillus thermodenitrificans NG80-2] Length = 309 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 46/284 (16%), Positives = 93/284 (32%), Gaps = 28/284 (9%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR--- 126 L EY + + + + + + +Q ++ G + ++ +R + Sbjct: 18 QLFLEYLQIE--KNYSQYTIVCYRRDIEQFLQFMNEEGIDELNEVAYSDVRLYLTKLYGQ 75 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQF 182 + S + ++S+R +K+ +R+ + A NP PK++ + +E+ + Sbjct: 76 QLASRSVARKISSLRSFYKFLLREGWTAENPFALAALPKKEQKIPNFLYREELEALFRVN 135 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGF 241 + G + E L +G R S+ C + L ++ K V Sbjct: 136 DGNTAVGQRNAALLELLYATGARVSECCHIRLSDLDFAASTVLIHGKGNKQRYVPFGRPA 195 Query: 242 MKLLAMT------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287 + L P F+N + A + N S H Sbjct: 196 REALERYIGGGRRELVGKLPADHRYLFVNARGNPLTPRGVRYILDRIVETAALTQNISPH 255 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330 +R AT + GA + G + + YT DR+R Sbjct: 256 VLRHTFATHLLNEGADLRSVQELLGHAHLSSTQVYTHVTKDRLR 299 >gi|312126960|ref|YP_003991834.1| integrase family protein [Caldicellulosiruptor hydrothermalis 108] gi|311776979|gb|ADQ06465.1| integrase family protein [Caldicellulosiruptor hydrothermalis 108] Length = 370 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 52/367 (14%), Positives = 111/367 (30%), Gaps = 46/367 (12%) Query: 15 RTRHGKIIYYFR-----KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 R R F G R+ + Y++ + K +++ K Sbjct: 6 RKRGNSYSVVFDVGRDENGKRRQKWVSGFKTKKEAEKYLAEVISQIEKGQFV---EKNEM 62 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ES 125 TL+ +S + ++ + A + + I G + +K+ H++ E Sbjct: 63 TLQEYLSYWLENYAKTNTAPKTYKRYIELVKHITTYLGKIEVQKLKPLHVQQFYTTLLEE 122 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 K + S+ ++ + K AV+ + V N ++ P+ + ++ W E +F Sbjct: 123 GKLSKSTILKIHRVFHLAIKHAVQWQLVNYNVLDAITPPRPERIEMKIWDIETANKFLEA 182 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII------------ 233 + + L++G+R + C + I + T I Sbjct: 183 -IKDDILYIPVLLALHTGMREGEICALKWDDVNLEDGYIVVKATLQKINGKLILKEPKSQ 241 Query: 234 ------------------TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275 E LL + +D + ++ + F Sbjct: 242 KSIRTIALMDSTIKALKEHKERQKEKKALLQENYKDENFVCAWDDGRPLDPMYVAKKFPK 301 Query: 276 KATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA-DRIRLG 332 K H +R AT+ G + G T++ +TY+ + + Sbjct: 302 LIKKYNFPPIRFHDLRHTHATLLLQQGVHPKIVSERLGHSTINITLDTYSHVLPNIQKEA 361 Query: 333 IKNSRRI 339 IK + Sbjct: 362 IKKLDKF 368 >gi|259417214|ref|ZP_05741133.1| site-specific tyrosine recombinase XerC [Silicibacter sp. TrichCH4B] gi|259346120|gb|EEW57934.1| site-specific tyrosine recombinase XerC [Silicibacter sp. TrichCH4B] Length = 311 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 41/289 (14%), Positives = 87/289 (30%), Gaps = 29/289 (10%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSG 122 + + + A N+R ++ + G +ITT +R+ Sbjct: 14 RDALQIWLDGLGALEGAADNTRTAYRGDVVDFLAFMSLHFGGPQGLGALSQITTADMRAW 73 Query: 123 VESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + S ++ + A + L++++ + W ++E LS PK + + RP K+ Sbjct: 74 MASSRNAGTGARSLARKLSAVKKFYGWLAKREGFEPTAVLSTRSPKFQKKLPRPLDKDAA 133 Query: 180 QQFK-------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 + ++ L GLR S++ + K G Sbjct: 134 RAMIDTVELQSQQDWVAARDVAVVTLLYGCGLRISEALGLLGKDAPLPATLRIKGKGGKE 193 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKM-------NATQFSIWFKAKATKAGVNKS 285 V + + ++ + +A + G+ + Sbjct: 194 RIVPVLPAAQQAVSRYLKLCPHPQEASLPLFRGVRGGGLHARMIQGVVADARRQLGLPAT 253 Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R AT +AG + G ++ + YT D L Sbjct: 254 ATPHAMRHSFATHLLEAGGDLRAIQELLGHASLSTTQAYT-AVDTAHLM 301 >gi|212710173|ref|ZP_03318301.1| hypothetical protein PROVALCAL_01227 [Providencia alcalifaciens DSM 30120] gi|212687172|gb|EEB46700.1| hypothetical protein PROVALCAL_01227 [Providencia alcalifaciens DSM 30120] Length = 309 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 41/279 (14%), Positives = 90/279 (32%), Gaps = 22/279 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRK 127 + + + L+ + ++ + + G+ + + I + Sbjct: 17 VEAFLRYLRVERRLSPVTITNYRRQLSVVCQILGELKVNQWQKLDITLGRSIAAKSRRTG 76 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +S L+++R W V+Q + NP ++ PK K + +++ Q + S Sbjct: 77 LQAASMALRLSALRSFCDWMVQQGELPANPVKTLHAPKAKKRLPKNMDVDEISQLLNMDS 136 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMK 243 + R E + +GLR S+ V+HL + K + L + Sbjct: 137 GDPLVVRDRTMLEVMYGAGLRLSELVGLDVKHLDLDLGEVWVMGKGSKERKIPLGKTAVS 196 Query: 244 LLAMTPIGKETFFI--------NNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293 L +E + ++++ F+ K V + + H +R Sbjct: 197 WLKRWLEMRELYEPVDGAVFISTQSGKRISNRNVQKRFEQWGIKQEVNSHINPHKLRHSF 256 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 AT ++ + G + + YT D L Sbjct: 257 ATHILESSGNLRGVQELLGHANLSTTQIYTH-LDFQHLA 294 >gi|117619677|ref|YP_855009.1| tyrosine recombinase XerC [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561084|gb|ABK38032.1| tyrosine recombinase XerC [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 325 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 42/277 (15%), Positives = 96/277 (34%), Gaps = 24/277 (8%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHT---P 130 EY + L+ ++R +++++ + + + G D+ ++ +RS V P Sbjct: 32 EYLR--VERQLSPHTRSNYQAHLEAMTAELVKLGVDDWARLEASQVRSLVTRMHKAGLAP 89 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FW 186 S ++++R W VRQ + NP + PK+ + ++M Q + Sbjct: 90 RSLATKVSALRSFCDWQVRQGRLVANPARGIVTPKQGRPLPKNLDVDEMYQLLNITDEQD 149 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLL 245 + R E + SGLR ++ + ++ + ++ + + ++ L Sbjct: 150 PLAVRDRAIMELMYSSGLRLAELVGLNLADVKLDERQLRVTGKGSRERVLPVGRMAVEWL 209 Query: 246 AMTPIGKE--------TFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSAT 295 + F++ KQ+++A + H +R AT Sbjct: 210 HKWLKLRPLLAGDELEALFVSKRKQRLSARSVQERLDGWGNKQALNAHVHPHKLRHSFAT 269 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 ++ + G + + YT D L Sbjct: 270 HMLESSGDLRAVQELLGHADLSTTQIYTH-LDFQHLA 305 >gi|221640000|ref|YP_002526262.1| site-specific tyrosine recombinase XerC [Rhodobacter sphaeroides KD131] gi|221160781|gb|ACM01761.1| Phage integrase family protein [Rhodobacter sphaeroides KD131] Length = 306 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 40/288 (13%), Positives = 81/288 (28%), Gaps = 28/288 (9%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFD--------QIIRKSGDFDYRKITTKHIRSG 122 + + + + ++ ++ + + G + +R+ Sbjct: 10 RDALEAWLTHQRAIEGASAHTIRAYTADVTGWLAFLAGHLGEGYGLKRLASVPHADLRAW 69 Query: 123 VESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + + S + L+++R W +E V LS PK + + RP ++ D Sbjct: 70 MAHERARGLGARSLARSLSAVRQFTGWLAEREGVDATAVLSARGPKFRRKLPRPLSEADA 129 Query: 180 QQFKSF-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 + S ++ L GLR S++ T K Sbjct: 130 KALLSTVAEDAAEDWIRARDLAVVTLLYGCGLRISEALGLPGTAHPLPEVLRITGKGDKE 189 Query: 233 I------TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--K 284 L +G F +N + + G+ Sbjct: 190 RLVPSLPVARAAVARYAALCPFDLGSGVLFRGARGGPLNPRLVARTMERARATLGLPPTA 249 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 + H +R AT +AG + G ++ + YT D RL Sbjct: 250 TPHALRHSFATHLLNAGGDLRSIQELLGHASLSTTQVYT-AVDGARLM 296 >gi|54310573|ref|YP_131593.1| site-specific tyrosine recombinase XerC [Photobacterium profundum SS9] gi|46915016|emb|CAG21791.1| putative integrase/recombinase XerC [Photobacterium profundum SS9] Length = 313 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 43/280 (15%), Positives = 94/280 (33%), Gaps = 23/280 (8%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESR 126 EY +S L+++++ +++ I + F+ T + I S Sbjct: 22 QFFYEYIRSE--RELSLHTQQNYKRQLSTIAEQLVSFEVTDWTMVDAGWVRQIASKGMRD 79 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 SS L+++R F + V+++ + NP V P++ + ++M Q S Sbjct: 80 GLKASSISMRLSALRSFFDFLVQKDILKANPAKGVAAPRKARPLPKNLDVDEMDQLLSVN 139 Query: 187 SEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 + + R E + +GLR ++ V+ + + I+ V Sbjct: 140 EDDPLSIRDRAMMELMYGAGLRLAELVSLNVRDISLSKGDIRVIGKGDKERIVPFAGLAR 199 Query: 243 KLLAMTPI--------GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKF 292 + +A + F++ +++ K V + + H +R Sbjct: 200 EWVANWLKVRGALASGDEVGLFVSKLGTRISTRNVQKRMAEWGQKQAVSSHINPHKLRHS 259 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 AT ++ + G + + YT D L Sbjct: 260 FATHMLESSGDLRAVQELLGHANLSTTQIYTH-LDFQHLA 298 >gi|307307477|ref|ZP_07587211.1| integrase family protein [Shewanella baltica BA175] gi|306910152|gb|EFN40586.1| integrase family protein [Shewanella baltica BA175] Length = 376 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 45/334 (13%), Positives = 95/334 (28%), Gaps = 11/334 (3%) Query: 21 IIYYFRKGHGRRIR-LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79 F+ R++ + ++ T A + A R + TL E+ Sbjct: 43 YYVRFQYQGLRQLHVIGNANDITLDDARLEARKQIDALRYGVVREPAPSLTLCAFAEEFF 102 Query: 80 KSAHWGSLAVNSR-ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138 ++ S + I GD +T +HI + + A + L Sbjct: 103 PRY-ARHWKPSTLLNSQRGFTRHIAPVLGDVPLAALTRQHIEQWFDGMHASKGMANRLLP 161 Query: 139 SMRVLFKWAVRQEYVA-----INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193 + V+ + A EY + + K S Sbjct: 162 LLSVMMQQAEVYEYRPAQSNPCKGFKRYKSTHSERYLSEEELKRLWLALDSHEKASPVAV 221 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253 + L+ +G RC++ C + + + KTG L + + Sbjct: 222 MVLRLLILTGCRCNEVCSVKWADYRQGHWYLPDSKTGAKTVFLSSFARELLSDWPQVSEH 281 Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYG 312 F+ + Q +++ + + H +R A+I+ + G Sbjct: 282 LFWHQSPSQPFTPVCLDRFWRPFRQTIHLNDVRIHDLRHTYASIAVKHNINILTIGRLLG 341 Query: 313 WKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346 + YT A R + + +S ++ + Sbjct: 342 HALPETTLKYTHLA--KRDVQQAANVVSQLIAGE 373 >gi|310642278|ref|YP_003947036.1| integrase family protein [Paenibacillus polymyxa SC2] gi|309247228|gb|ADO56795.1| Integrase family protein [Paenibacillus polymyxa SC2] Length = 318 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 40/293 (13%), Positives = 94/293 (32%), Gaps = 25/293 (8%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---S 131 + + ++++ ++ Q +R D ++ H+ S + + S Sbjct: 24 LEAFLIWMKDAGYTIHTQKNYTGDVKQFLRTLRDKPLDQVKKIHVMSYLSKAREGGAGDS 83 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-- 189 + + ++ F+ E + NP +++ K + + + E Q EG Sbjct: 84 TRNRKHAAVNSFFRALQEFELCSTNPAAGIKKAKTEKNRMPVYLDEKDIQPFLLAVEGKY 143 Query: 190 -SQPRLAFEFLLYSGLRCS---------DSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239 ++ F ++Y GLR S + +T + + Sbjct: 144 ANRNMAIFLLMVYMGLRVGEIHSLNVSDYSRERRTLDVFGKGRKWRTLPVPAAVCDFVEH 203 Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIW----FKAKATKAGVNK----SAHGVRK 291 + L ++ FI+ +++ F+ G+ + S+H +R Sbjct: 204 ALEERLTPWRGKEDAMFISQKGRRLAVRSIQQIATETFERFQQDKGLERREAYSSHKLRH 263 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 AT+ GA + G ++ YT DR + K ++ + Sbjct: 264 TFATMLLRKGADLRTVQELLGHSSIQTTTVYTHVTDREK--EKAMDKLDIQIP 314 >gi|269964616|ref|ZP_06178854.1| hypothetical protein VMC_02840 [Vibrio alginolyticus 40B] gi|269830515|gb|EEZ84736.1| hypothetical protein VMC_02840 [Vibrio alginolyticus 40B] Length = 402 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 55/351 (15%), Positives = 110/351 (31%), Gaps = 28/351 (7%) Query: 10 FVTKERTRHGKIIYYFRK---GHGRRIRLPYPHESTFIPAYMSALTGSTPK-----REYI 61 + R G+ + FR + I+L A A + I Sbjct: 43 GLKIIINRQGRRRFLFRYTYNRVKKSIQLGEYPALDIATARQIANDHKREIALGNDPKAI 102 Query: 62 NSPRKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHI 119 + T + Y A L + S K G I + I Sbjct: 103 RDEKCNVLTFQEFSELHYLPYAMMNKL---TAKSDAGSLKLHFYPKWGKKPLTDIGQQDI 159 Query: 120 RSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 + ++ P++ + + + +F+ A+ YV NP + + K R ++ Sbjct: 160 QKLLDGLLEGRKPATVNRLRSLVLRMFRLAMEWGYVDSNPGQYIRKLKENNVRQRFLSRA 219 Query: 178 DMQQFKSFWSEGSQ--PRLAFEFLLYSGLRCSDSCRAGVQHLQ-----NNIFSIKTQKTG 230 ++ F +E A +F L +G+R + + + L N + K+G Sbjct: 220 EVSSFIKACNEEPNRTQSNALKFALLTGMRIGEITGSKWECLTVDDDGNWSLFLPHTKSG 279 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI---WFKAKATKAGV--NKS 285 TV L + +++ ++ + F AG+ N Sbjct: 280 LSRTVLLNNLAKEVIHDQRRFQQPKNPYIFAGDAPGRPIAHPKKAFARIKKAAGITDNFR 339 Query: 286 AHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 H +R A+I ++G AT +++ G ++ + Y A + Sbjct: 340 IHDLRHSFASILINSGNATLYDVQHLLGHQSAQTSTRYAHLASSRLREVSA 390 >gi|124006143|ref|ZP_01690979.1| integrase, site-specific recombinase [Microscilla marina ATCC 23134] gi|123988320|gb|EAY27973.1| integrase, site-specific recombinase [Microscilla marina ATCC 23134] Length = 296 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 46/278 (16%), Positives = 85/278 (30%), Gaps = 28/278 (10%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESR---K 127 I + K + N+ S+ Q + IRS V K Sbjct: 2 IKSFLKHILAKRYSQNTITSYNHDLQQFSTYLQEIHRLEEPEHADHNMIRSWVLQLTEEK 61 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-----F 182 +S + + +++ +K+ Q ++ NP ++ K + +E M Q Sbjct: 62 ANVTSINRKIATLKSFYKYLQNQGFIKKNPAQRLKPMKVPKKAPIFVEEEKMLQLLNTVQ 121 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-----TIITVEL 237 EG + + E L +G+R S+ +QH+ I+ + + + Sbjct: 122 YPAGIEGLRDKFTIEILYGTGMRLSELINLQIQHVDFQKLRIRIPEKNNLKKEKERNISV 181 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWFKAKATKA--GVNKSA 286 + LL K+ + K KS Sbjct: 182 AKPLLDLLQQYEKSKQQTYGKLVHNHVLVTDEGKPAYPMLIYRTVKKYLQLITDQEKKSP 241 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT + GA HE+ G T+ + Y+ Sbjct: 242 HVLRHSFATHLLNKGADLHEVKDMLGHTTLSTTQAYSH 279 >gi|186474845|ref|YP_001856315.1| site-specific tyrosine recombinase XerC [Burkholderia phymatum STM815] gi|184191304|gb|ACC69269.1| tyrosine recombinase XerC [Burkholderia phymatum STM815] Length = 307 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 49/294 (16%), Positives = 92/294 (31%), Gaps = 31/294 (10%) Query: 69 TTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127 T I+ Y S L+ ++ ++ ++ + +T IR V Sbjct: 1 MTSADPIATYLSSLEHERRLSAHTLRAYTHELGELKTLANGRPLESLTATDIRGAVARAH 60 Query: 128 HTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK- 183 SA L++ R ++W + + NP +V PKR + + +D + Sbjct: 61 AGGLSARSIGHRLSAWRAFYRWLAGRVDLPANPVATVRAPKRAKTLPKALSVDDTHKLME 120 Query: 184 ---SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ------------K 228 + +EG + E SGLR S+ Q+ + + + K Sbjct: 121 TPATATAEGLRDHAMLELFYSSGLRLSELVGLDAQYADADGYRSQGWLKLDDAEVEVLGK 180 Query: 229 TGTIITVELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKA 280 V + ++ L F++ +M+ K A A Sbjct: 181 GNRRRVVPVGSKALEALRAWLAVRGELVKHDPHPLFVSVRGNRMSPNVVRDRVKRAALTA 240 Query: 281 GVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 G+ H +R AT + + G ++ + YT G D L Sbjct: 241 GIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASIAATQVYT-GLDFQHLA 293 >gi|312622379|ref|YP_004023992.1| integrase family protein [Caldicellulosiruptor kronotskyensis 2002] gi|312202846|gb|ADQ46173.1| integrase family protein [Caldicellulosiruptor kronotskyensis 2002] Length = 328 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 42/287 (14%), Positives = 91/287 (31%), Gaps = 45/287 (15%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDY-------------------------RKITTKHI 119 + + N+ + +R D + +T ++ Sbjct: 21 KNKSPNTIKEYYYDLRNFLRYLKAKDLNMLSQIEKIEDLENIDVSNFEIEKLKALTLSNL 80 Query: 120 RSGVESRK----HTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPW 174 + P + + + S+R FK+ + + + NP +E PK R Sbjct: 81 YEYFSFLATHFNNGPYARARKVASIRSFFKYLYSKAKLIPDNPAKDLESPKLGKRNPRYL 140 Query: 175 TKEDMQQFKSFWS--EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 T ++ ++ S + L GLR S+ + +++++ I + Sbjct: 141 TLDESKKLLSAIDGENKERDFAIITIFLNCGLRLSELVNINLSDIKDDMLRIVGKGN-KE 199 Query: 233 ITVELPDGFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGV-- 282 + L + + T F++ K++++ + AG+ Sbjct: 200 RIIYLNKACKDAIENYLKVRPTEGVKDKDALFLSERKKRISRRTVQYIVEKYVKMAGINQ 259 Query: 283 -NKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD 327 SAH +R +AT+ G L G +++ E YT D Sbjct: 260 KKISAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVND 306 >gi|77465633|ref|YP_355136.1| putative integrase [Rhodobacter sphaeroides 2.4.1] gi|77390051|gb|ABA81235.1| putative integrase [Rhodobacter sphaeroides 2.4.1] Length = 373 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 66/347 (19%), Positives = 123/347 (35%), Gaps = 27/347 (7%) Query: 10 FVTKERTRHGKI-IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 + + G+ +Y++ G RI P + F + + P Sbjct: 18 HRVRRKLASGETAVYHYAWRGGPRIDAA-PGSAEF-------VAAYNAAHAARDRPVHHD 69 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128 TL+ LI+ Y+K+ + LA +R + + QI GD + + +R + Sbjct: 70 GTLQALITAYQKTPAFTDLAEATRKGYIRHIRQIEADFGDMPVQALADPRVRGEFLDWRD 129 Query: 129 -----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + SA + + + WA + + +NPC R + WT+ + F Sbjct: 130 RLAQKSKRSADYAFSVLARILSWAHDRRKIPVNPCEKPGRLYTGSRADSIWTEAQIAAFL 189 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 + RL F +++G R +D + ++ KTG + + + + Sbjct: 190 AVAPR--PVRLPFLLAIWTGQRQADILQLTWTAYDGQAIRLRQSKTGRHMLIPVAQPLRE 247 Query: 244 LLAMTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300 + + T + Q + F F AG+ + H +R + T A A Sbjct: 248 AMEEAKARRRTLTICETSRGQPWTSDGFKTSFGKAQASAGIEGVTFHDLRGTAVTFLALA 307 Query: 301 GATAHELMATYGWKTVDQAE-----TYTKGADRIRLGIKNSRRISSV 342 G + E+ A G ++ AE Y G DR RLG ++ Sbjct: 308 GCSVPEIAALTGH-SLKDAEGILSKHYL-GRDR-RLGESAVAKLEKH 351 >gi|257458423|ref|ZP_05623565.1| tyrosine recombinase XerC [Treponema vincentii ATCC 35580] gi|257444227|gb|EEV19328.1| tyrosine recombinase XerC [Treponema vincentii ATCC 35580] Length = 304 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 35/286 (12%), Positives = 84/286 (29%), Gaps = 33/286 (11%) Query: 72 KWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKH 128 + + +Y SA + + ++ + + + +++ +R V + Sbjct: 2 EQVFEDYLAYSAGVRHFSEKTIEAYRNDLKLFSAWLAENELPFTEVSKVQVRIFVADLGN 61 Query: 129 T---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 P+S + L+ +R L+++A+++ NP + K+ + R ++ ++F F Sbjct: 62 RHFAPASVNRILSCVRGLYRYALQKGLCTTNPAALIRNLKQPDKLPRFLFPDEAERFCEF 121 Query: 186 WSEGSQPRLAFEFLLY-----SGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPD 239 E A + L+ +G R ++ + L+ I K V D Sbjct: 122 PKEAGILWYARDAALFSSLYSTGCRAAELQGLKITDLKGECRWAIVRGKGSKERKVFFAD 181 Query: 240 GFMKLLAMTPIGKETFFIN-------------------NDKQKMNATQFSIWFKAKATKA 280 + + + + Sbjct: 182 FAQEAVQRYLTERAELIAYLKEQDGLKTPVAEEALFLNCRGGALTTQGIRYIIDRYTALL 241 Query: 281 G--VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + H R A++ GA + G + + YT Sbjct: 242 PNYKKLTPHAFRHSFASMFITRGADIRVVQELLGHSNIATTQRYTH 287 >gi|219852288|ref|YP_002466720.1| integrase family protein [Methanosphaerula palustris E1-9c] gi|219546547|gb|ACL16997.1| integrase family protein [Methanosphaerula palustris E1-9c] Length = 292 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 41/280 (14%), Positives = 93/280 (33%), Gaps = 17/280 (6%) Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS----------GDFDYRKITT 116 ++ I Y + + + S+ G D R++ T Sbjct: 2 DKSSFVEWIDRYHSYMQMRNYSEKTIQSYIRVVRLFGAYLIDRGATFDQVGGADDRRLIT 61 Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 ++ + + ++ + + ++++ +++ Q VA+NP ++RPK K + +R K Sbjct: 62 GYLSALSQEHGYSAKTLHRIISTLSSFYRFLYAQGAVAVNPVTGIDRPKIKRQELRYL-K 120 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 + +L + +G+R S+ C ++H+ + +I+ + G I Sbjct: 121 HRQVLKLIESMPSVRDQLVVRMIYATGVRVSELCGISIEHIDFDDLTIRIRGKGDKIRTV 180 Query: 237 LPDGFMKLLAMTP---IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFS 293 D L FF+ ++ F+ A + H +R Sbjct: 181 FIDEETCRLMEIYAGDRIFGPFFVGQQGHPLSPRTVQHLFEVY---APPGVTPHTIRHSY 237 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 A+ + G ++ E Y R G+ Sbjct: 238 ASELYKRSKNLRVVQENLGHSSIKTTEIYLHTDLDERQGV 277 >gi|282878705|ref|ZP_06287473.1| phage integrase domain protein [Prevotella buccalis ATCC 35310] gi|281299096|gb|EFA91497.1| phage integrase domain protein [Prevotella buccalis ATCC 35310] Length = 292 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 43/275 (15%), Positives = 93/275 (33%), Gaps = 24/275 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GD-FDYRKITTKHIRSGVESRKHT 129 I E+ + + + + S+ R GD + + + IR +E Sbjct: 2 IEEFLNYLRFEKNRSTLTAKSYGDDLRAFERYFQGLGDQITWESVDSDIIRGWMEDMMDR 61 Query: 130 PSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 +SA + L+++R L+++++ + V +NP L +ERPK + + +M + Sbjct: 62 GNSATSICRRLSALRSLYRYSLSRGLVQVNPTLRIERPKMGKPLPQFLKESEMDELLDAS 121 Query: 187 SEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELPDG 240 + + R +G+R ++ + N K V D Sbjct: 122 TWDTSYQDALARTIIITFYETGMRLAELIGLDDVSVDFVNRQFKVLGKRNKQRLVPFGDE 181 Query: 241 FMKLLAMTPIGKETFFINNDKQKM-NATQFSIWFK--AKATKAGV-------NKSAHGVR 290 ++L + + K + + K + ++ H +R Sbjct: 182 LYQVLQEYLNQRNEQIVRKSKAFFLSRNGVRMNHNQVRYLVKKNLSLVSTLKKRTPHVLR 241 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 AT + GA + G ++++ E YT Sbjct: 242 HTFATTMLNNGAGLENVQKLLGHESLETTEIYTHT 276 >gi|302335890|ref|YP_003801097.1| tyrosine recombinase XerD [Olsenella uli DSM 7084] gi|301319730|gb|ADK68217.1| tyrosine recombinase XerD [Olsenella uli DSM 7084] Length = 321 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 40/306 (13%), Positives = 96/306 (31%), Gaps = 45/306 (14%) Query: 76 SEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKH--- 128 EY + N+ ++ + + G D ++ I + +E+ Sbjct: 8 DEYLNYLAIERGSSPNTLEAYGRDLGRYVAHLRGRGADDPDAVSRHDIEAYLETLAEGGL 67 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +PSS + + +++ ++ V ++ +P + P++ + E + + + Sbjct: 68 SPSSVQRSVAAIKGFHRFMVSEQITENHPTADLPLPRKALHLPDTLSHEQVFRLLDEPFQ 127 Query: 189 GS----------------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226 + + + E L GLR S+ C ++ + + ++ Sbjct: 128 DACRPAPRALADGGTDDSGAARFYRDKAILEVLYGCGLRVSELCSLELRDVLLDDEVLRI 187 Query: 227 -QKTGTIITVE-----------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274 K V + + LL P F+ + K++ + Sbjct: 188 LGKGSKERVVPILGTAARALGSYLEDWRPLLLKPPRICPAVFLGSRGTKISRQAVFGIVE 247 Query: 275 AKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR--IRL 331 G+ H +R AT + G + G ++ + YT DR +R+ Sbjct: 248 RYGRLTGIEGLHPHSLRHSYATHLLEGGMDLRAVQELLGHASISTTQLYTH-VDRTHVRM 306 Query: 332 GIKNSR 337 + Sbjct: 307 AYLAAH 312 >gi|167580058|ref|ZP_02372932.1| site-specific tyrosine recombinase XerD [Burkholderia thailandensis TXDOH] Length = 323 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 42/279 (15%), Positives = 86/279 (30%), Gaps = 25/279 (8%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT---KHIRSGVESRKH-TPSSA 133 + + L+ N+ ++ + + + + +R +S+ Sbjct: 43 WLEH----GLSRNTLDAYRRDLQLFAQWLAARHAVSLDRTEKPMLEGYIAARSDGKATSS 98 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--- 190 + L+ R + WAVR+ A++P L + K+ ++ ++ + + Sbjct: 99 NRRLSVFRRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALLAAPDVDTPLG 158 Query: 191 -QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT 248 + R E + SGLR S+ + N ++ V + + Sbjct: 159 LRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVPFGEVAHGWIERY 218 Query: 249 PIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296 F+ M QF K A +A V + S H +R AT Sbjct: 219 LRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRAHLSPHTLRHAFATH 278 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 + GA + G + + YT A + Sbjct: 279 LLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKALHA 317 >gi|94986556|ref|YP_594489.1| site-specific recombinase XerC [Lawsonia intracellularis PHE/MN1-00] gi|94730805|emb|CAJ54167.1| Site-specific recombinase XerC [Lawsonia intracellularis PHE/MN1-00] Length = 313 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 43/293 (14%), Positives = 94/293 (32%), Gaps = 33/293 (11%) Query: 84 WGSLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVESRKH---TPSSAIQ 135 ++ ++ ++ Q I KHI+ S + T +S + Sbjct: 17 HKGFSLATQDAYRRDISQFEVYLRTIGLTLEHPEHINKKHIQQFSASLYYKKLTRTSIAR 76 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-------- 187 L ++R LF++ ++ ++ NP + V PK+ + + + + Sbjct: 77 KLAALRSLFRYLLKTHHIKDNPAVGVHNPKQHVKYPEILNVDQVFLLLKGANNILKTSHT 136 Query: 188 -----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 + E L SGLR S++ V ++ ++ L D Sbjct: 137 GLELAIAHRNNALLELLYGSGLRISEALCLNVSDIRTEDGFVRVIGKGNKERLAPLSDTS 196 Query: 242 MKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRK 291 + L + F+ ++++ Q + +AG+ + H +R Sbjct: 197 IVALEEWLAIRHMVATLGEQALFVGVRGKRLHRRQTIRILEELCLQAGLPLTTAPHTLRH 256 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISSVV 343 AT + GA + G + + YT D++ + S + Sbjct: 257 SFATHLLEGGANLRAVQELLGHARLSTTQRYTHITLDKLIQAYDKAHPFSGTL 309 >gi|325104990|ref|YP_004274644.1| integrase family protein [Pedobacter saltans DSM 12145] gi|324973838|gb|ADY52822.1| integrase family protein [Pedobacter saltans DSM 12145] Length = 293 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 43/275 (15%), Positives = 94/275 (34%), Gaps = 24/275 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESR---K 127 + + + + ++ +S+++ +Q + D T + +R+ V S + Sbjct: 2 FLERFFNYISFEKKYSAHTVLSYQTDINQYQDFLSVIEADILSATHRDVRNWVVSLMDDQ 61 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 + + + +++++ L+ + +R+E + +NP V PK E + + Sbjct: 62 KSSRTVNRKISALKTLYSFLLREELIEVNPMQKVLAPKIAKTLPVFLETEKLNALLDYEG 121 Query: 187 -----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVEL--- 237 EG + +L EFL +G+R S+ + + N K + + Sbjct: 122 IFEEGFEGKRDKLILEFLFGTGVRLSELLGLREKDVDFGNKTVKVLGKGNKERIIPMSES 181 Query: 238 -PDGFMKLLAMTPIGKETFFIN-----NDKQKMNATQFSIWFKAKA--TKAGVNKSAHGV 289 L G + N + K + KS H + Sbjct: 182 LICSIRDYLLKKKSGVIYNNSDALIVTNKGLQAYPEFIYRTVKRYLSIISSKEKKSPHVL 241 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT +AGA + + G ++ + YT Sbjct: 242 RHTFATALLNAGADINAIKELLGHASLAATQVYTH 276 >gi|307728182|ref|YP_003905406.1| tyrosine recombinase XerC [Burkholderia sp. CCGE1003] gi|307582717|gb|ADN56115.1| tyrosine recombinase XerC [Burkholderia sp. CCGE1003] Length = 307 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 44/294 (14%), Positives = 91/294 (30%), Gaps = 31/294 (10%) Query: 69 TTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVE 124 T I+ Y + L+ ++ + D++ + + +T IR + Sbjct: 1 MTETDFIAAYLSNLEHERRLSAHTLRGYTHELDELRLLAKGRPLQSLTAVDIRGAVARAH 60 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + T S L++ R ++W + + NP +V PK+ + + +D + Sbjct: 61 AGGLTARSISHRLSAWRAFYRWLAGRIDLPANPVATVRAPKQPKTLPKALSVDDANRLME 120 Query: 185 FWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ------------K 228 EG + E SGLR ++ V+ + + K Sbjct: 121 TPPAASAEGLRDHAMLELFYSSGLRLAELVGLDVRFADADGYRSAGWLKLDSAEVEVLGK 180 Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKA 280 V + ++ L ++ + +++ K A A Sbjct: 181 GNRRRIVPVGSKALEALNAWLAVRDQMVRLDPHPLFLSARGNRLSPNVVRERVKRAALVA 240 Query: 281 GVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 G+ H +R AT + + G ++ + YT G D L Sbjct: 241 GIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYT-GLDFQHLA 293 >gi|468715|emb|CAA55226.1| sss [Pseudomonas aeruginosa] Length = 302 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 37/278 (13%), Positives = 92/278 (33%), Gaps = 21/278 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVESRKHTP 130 + + + ++ ++ + +I+ K+G D+ + T+ +R+ V Sbjct: 5 LDAFLEHLRSERQVSAHTLDGYRRDLLKILALAEKAGLSDWNALDTRSLRTFVARLHQQG 64 Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S + L++ R L+++ +R+ +P + PK + R + Q Sbjct: 65 QSSRSLARLLSATRGLYQYLLREGRCRHDPANGLRAPKSPRKLPRTLDADRALQLLDGAV 124 Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 E + + E SGLR S+ ++ L ++ + + + + Sbjct: 125 EDDFIARRDQALLELFYSSGLRLSELVGLDLEWLDLKEGLVRVRGKGNKVRELPVGKAAR 184 Query: 243 KLLAMTPIGKET-------FFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSA 294 + L + FI +++ + + + G + H +R A Sbjct: 185 QALEAWLPLRTQAAPEDGAVFIGRSGKRLTPRAIQLRVRQAGVRELGQHLHPHMLRHSFA 244 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 + ++ + G + + YT D L Sbjct: 245 SHLLESSGDLRAVQELLGHADIATTQIYTH-LDFQHLA 281 >gi|312892234|ref|ZP_07751731.1| integrase family protein [Mucilaginibacter paludis DSM 18603] gi|311295364|gb|EFQ72536.1| integrase family protein [Mucilaginibacter paludis DSM 18603] Length = 322 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 40/299 (13%), Positives = 91/299 (30%), Gaps = 42/299 (14%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRK-------------------SGDFDYRK 113 ++ + + + + ++ ++++ Q Sbjct: 14 VLERFIQYLRYEKRFSSHTITAYQTDLYQFFTYTANSADHNLSPAEAELKVKLALSHIAD 73 Query: 114 ITTKHIRSGVESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170 IT + IR + S + ++ +R FK+A+R+ + NP ++ PK Sbjct: 74 ITYQDIREWIVQLMNDDQAAKSINRKISCLRTFFKFALREGIITANPASKIQAPKIPKRL 133 Query: 171 I------RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FS 223 + + Q G + +L E L +G+R ++ + Sbjct: 134 PVVVEEDKIVSLLSSSQIFDDSFTGLRDKLVIELLFGTGIRLAELVGLKETDIDIYEGTI 193 Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK---------QKMNATQFSIWFK 274 K + + LL K++ NN+ + + + Sbjct: 194 KVLGKRNKERVIPIHSELKLLLVHYINIKKSENFNNNSLTLIVTSKGANAYSKMVYLIVQ 253 Query: 275 AKATKA--GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330 + KS H +R AT + GA + + G + + YT +R++ Sbjct: 254 KYLSLISTQDKKSPHVLRHSFATSLLNHGADLNAIKELLGHANLSATQIYTHNSVERLK 312 >gi|325107018|ref|YP_004268086.1| tyrosine recombinase XerD subunit [Planctomyces brasiliensis DSM 5305] gi|324967286|gb|ADY58064.1| tyrosine recombinase XerD subunit [Planctomyces brasiliensis DSM 5305] Length = 309 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 40/282 (14%), Positives = 94/282 (33%), Gaps = 27/282 (9%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIR---SG 122 + + + + + +R ++ F + D R + T +R + Sbjct: 2 EAAFDGFLRYLRHERNASELTRKAYAEDFASFLDYCEDRHGYFPEPRDVDTTFLRGYLAY 61 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + + ++ + L +R LF++ +R++ NP ++ P+ + T ++ Q Sbjct: 62 LHDCGYQRTTIARRLACLRSLFRYCLREQLCDSNPAKALRTPRTGRKLPHYLTTSEVSQL 121 Query: 183 KSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVEL 237 G + R E L +GLR ++ ++ + + K + Sbjct: 122 LEAPPANHPLGIRDRAILETLYTAGLRVAELVALDIEDWDRDANVLLVRGKGRKERIAPV 181 Query: 238 PDGFMKLLAMT-----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284 + L+ ++ F+N ++ + +G+ Sbjct: 182 GSYAERALSRWLEIREVGPRANSDDQQAIFLNKFGTRLTTRSVGRLLEKHLQTSGLSNKT 241 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 S H +R AT D GA + G K++ + YT + Sbjct: 242 SPHTLRHSFATHLLDGGADLRSVQELLGHKSLTTTQIYTHVS 283 >gi|254670992|emb|CBA07733.1| site-specific recombinase [Neisseria meningitidis alpha153] Length = 305 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 40/293 (13%), Positives = 86/293 (29%), Gaps = 30/293 (10%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD----------YRKITTKHIR 120 Y ++ + ++ ++ +++ + Sbjct: 6 FAAHFDAYLENIVREGKSEHTVAAYRRDLEELFALLAQMPSEAEGGVPQGLSQRDFTAAL 65 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + R + + L+S R W V++ + +P ++ PK+ + +E + Sbjct: 66 RRLSQRGLNARTLARKLSSWRQYCAWLVKRGLMRADPTADIKPPKQPERVPKALPQEWLN 125 Query: 181 QFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIIT 234 + +G + FE + SGLR S+ + + + T K Sbjct: 126 RMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQ 185 Query: 235 VELPDGFMKLLAMTPIGKETFFIN---NDKQKMNATQFSIWFKAKATKA-----GVNKSA 286 V L ++ L ++T + K A A G + S Sbjct: 186 VPLTGKSVEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHVSP 245 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 H +R A A + G ++ + YTK L + R+ Sbjct: 246 HMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK------LDFDHIARL 292 >gi|315282101|ref|ZP_07870587.1| tyrosine recombinase XerC [Listeria marthii FSL S4-120] gi|313614253|gb|EFR87911.1| tyrosine recombinase XerC [Listeria marthii FSL S4-120] Length = 300 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 42/284 (14%), Positives = 96/284 (33%), Gaps = 27/284 (9%) Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFDYRKITTKHIRSGV 123 + L+ +Y S + +VN+ ++E+ + + + Y+++T +R + Sbjct: 3 QEGKLEQQFLDYLHSE--RNYSVNTSTAYENDLLDFRRFLNEQAIMAYQQVTFLDVRIYL 60 Query: 124 ESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 K + ++ + ++S+R + + +R+ + NP V K + + + E+M+ Sbjct: 61 TELKQKSFSRTTVARKISSLRSFYTFLLRENVITENPFTYVSHAKNQLRLPKFFYSEEME 120 Query: 181 QFKSFWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIIT 234 E + R+ E L +G+R S+ + L + +I K Sbjct: 121 ALFQVVYEDNETLTLRDRVLLEVLYGTGIRVSECAGILMPDLDTSYQAILIRGKGNKERY 180 Query: 235 VELPDGFMKLLAMTPIGKETFFI-----------NNDKQKMNATQFSIWFKAKATKAGV- 282 V + + N+ + +KA + Sbjct: 181 VPFGVYAEDAITDYLPSRTELMTRYKKSHDALLVNHYGDPLTTRGIRYCLTKIISKASLT 240 Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 H +R AT + GA + G ++ + YT Sbjct: 241 RKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHV 284 >gi|290894169|ref|ZP_06557140.1| integrase/recombinase XerC [Listeria monocytogenes FSL J2-071] gi|290556299|gb|EFD89842.1| integrase/recombinase XerC [Listeria monocytogenes FSL J2-071] gi|313609074|gb|EFR84788.1| tyrosine recombinase XerC [Listeria monocytogenes FSL F2-208] Length = 300 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 37/284 (13%), Positives = 89/284 (31%), Gaps = 27/284 (9%) Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHIR 120 + L+ +Y S + +VN+ ++E+ R + + + Sbjct: 3 QEGKLEQQFLDYLHSE--RNYSVNTSTAYENDLLDFRRFLNEQAIETYQQVTFLDVRIYL 60 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + ++ + + ++ + ++S+R + + +R+ + NP V K + + + E+M+ Sbjct: 61 TELKQKSFSRTTVARKISSLRSFYTFLLRENVITENPFTYVSHAKNQLRLPKFFYSEEME 120 Query: 181 QFKSFWSEG-----SQPRLAFEFLLYSGLRCSDSCRAG-VQHLQNNIFSIKTQKTGTIIT 234 E + R+ E L +G+R S+ + + K Sbjct: 121 ALFQVVYEDNETLTLRDRVLLEVLYGTGIRVSECAGILLPDLDTSYQAILIRGKGNKERY 180 Query: 235 VELPDGFMKLLAMTPIGKETFFI-----------NNDKQKMNATQFSIWFKAKATKAGV- 282 V + + N+ + +KA + Sbjct: 181 VPFGVYAEDAITDYLPKRTELMTRYKKSHDALLVNHYGDPLTTRGIRYCLTKIISKASLT 240 Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 H +R AT + GA + G ++ + YT Sbjct: 241 RKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHV 284 >gi|301059797|ref|ZP_07200691.1| site-specific recombinase, phage integrase family [delta proteobacterium NaphS2] gi|300446123|gb|EFK09994.1| site-specific recombinase, phage integrase family [delta proteobacterium NaphS2] Length = 375 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 45/358 (12%), Positives = 100/358 (27%), Gaps = 34/358 (9%) Query: 10 FVTKERTRHGKIIYYFRKGH---GRRIRLPYPHESTFIPAYMSALTGSTPKR--EYINSP 64 FV K + + G I Y R G++ + ++ L Sbjct: 5 FVHKRKGKTG-IGYAVRYADPLTGKKRTFGTFRKFREAQQKVNELRMLLDSGGTPLQKKE 63 Query: 65 RKKPTTLKWLISE----YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 R P T + + + L+ + + + +++ GD +IT + I Sbjct: 64 RFTPLTFGEVAESLLAVWDERLKIRELSQKTHNDYVYWLRILMKVFGDKLLCQITKEDIE 123 Query: 121 SGVESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + A + L +R +F ++ VA NP +V + + Sbjct: 124 EYRNQKAQEFSNVCANKHLLRIRNVFAHGIKILAVANNPAKAVPLLSERAHIRDTFVLPA 183 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA----GVQHLQNNIF------SIKTQK 228 + S+ + + ++ G S + ++ + +T+ Sbjct: 184 ELERILAASQKLRSKYYLPAVILLGAEHGASRQEILSLKWSKIKFDFQDIGLVEFFRTKT 243 Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA-----------TQFSIWFKAKA 277 +P LL +F +K Sbjct: 244 GRKRTEYLMPRTKKALLEWQSHLDFMRHRKRITDIKTDLVFCHLDGSPFRRFDTAWKKAL 303 Query: 278 TKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334 AG+ H +R + +G + G K + + Y+ + L ++ Sbjct: 304 DLAGIKGLHFHDLRHTFCSNLIISGGGIKDAKEMIGHKDISMTDRYSHLTNGRMLALQ 361 >gi|295675162|ref|YP_003603686.1| tyrosine recombinase XerC [Burkholderia sp. CCGE1002] gi|295435005|gb|ADG14175.1| tyrosine recombinase XerC [Burkholderia sp. CCGE1002] Length = 307 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 44/294 (14%), Positives = 86/294 (29%), Gaps = 31/294 (10%) Query: 69 TTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127 T I+ Y L+ ++ + ++ + +T IR V Sbjct: 1 MTAADPIAAYLSHLEHERRLSEHTLRGYTHELAELKLLAKGRPLESLTAVDIRGAVARAH 60 Query: 128 HTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 +A L++ R ++W + NP +V PK+ + + +D + Sbjct: 61 AGGLTARSIGHRLSAWRAFYRWLAGHVELPANPVAAVRAPKQAKTLPKALSVDDTARLMD 120 Query: 185 FWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ------------K 228 EG + E SGLR ++ V+ + + K Sbjct: 121 SPPADSPEGLRDHAMLELFYSSGLRLAELVGLDVRFADVDGYRSAGWLKLDSGEVEVLGK 180 Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKA 280 V + + L +E ++ +++ K A A Sbjct: 181 GNRRRVVPVGSKAVAALNAWLAVRERMVRHDPHPLFLSARGNRLSPNVVRERVKRAALAA 240 Query: 281 GVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 G+ H +R AT + + G ++ + YT G D L Sbjct: 241 GIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYT-GLDFQHLA 293 >gi|254476039|ref|ZP_05089425.1| tyrosine recombinase XerD [Ruegeria sp. R11] gi|214030282|gb|EEB71117.1| tyrosine recombinase XerD [Ruegeria sp. R11] Length = 332 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 47/309 (15%), Positives = 98/309 (31%), Gaps = 42/309 (13%) Query: 73 WLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDY--RKITTKHIRSG---VESR 126 IS + + A N+ +++ + + I S ++ Sbjct: 9 QWISTFLDAQAADLGAAHNTLLAYGRDLKDVAAWLAARQIGFETASRDQIESYLIACDAE 68 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + ++ + L++++ ++++A + + NP + ++ P R+ + ++ + Sbjct: 69 GLSRATRARRLSAIKQIYRFAFDEGWRDDNPAIQIKGPGRQKSLPKTLEVIEVDKLLDAA 128 Query: 187 SEGSQPR-------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238 + + E L +G+R S+ V + + + K G V L Sbjct: 129 RQSGRNLPDRIRNTCLMELLYATGMRVSELVGLPVTAARGDPRMLLVLGKGGKERMVPLS 188 Query: 239 DGFMKLLAMTPIGK----------------ETFFINNDKQKMNATQFSIWFKAKATKAGV 282 LA + F + +F + K A AG+ Sbjct: 189 PPARDALAAWLAHRDKAEEAAVAKGAPPSRYLFPSRGKSGHLTRHRFYLLIKEFAVTAGI 248 Query: 283 N---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 + S H +R AT GA + A G + E YT D R+ Sbjct: 249 SPEAVSPHTLRHAFATHLLANGADLRAIQALLGHADIATTEIYTHVLD---------ARL 299 Query: 340 SSVVDSDDP 348 S +V P Sbjct: 300 SELVLEHHP 308 >gi|307591252|ref|YP_003900461.1| integrase family protein [Cyanothece sp. PCC 7822] gi|306986817|gb|ADN18692.1| integrase family protein [Cyanothece sp. PCC 7822] Length = 275 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 46/257 (17%), Positives = 97/257 (37%), Gaps = 13/257 (5%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--- 129 +I + + + ++ + Q I + +IT + V T Sbjct: 14 EIIVLWLA-----GKSKTTVKTYVCHVKQFIDFM-NQPLAEITLDDLVLWVNRLNLTYTP 67 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 P+ A + L ++ LF + V+ Y++ N ++ PK + + + + + Sbjct: 68 PTVANKIL-CIKSLFSFCVKVGYLSFNIGALIKPPKTRDKRAEKILDQGDVKRLIEQATP 126 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249 + R+ + +GLR S++ L+ N + K + + +PD ++ L P Sbjct: 127 GRDRVLLCLIYTTGLRVSEAVNLTWSDLKGNKLA-VYGKGSKLRFIIVPDWLLEQLQTLP 185 Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHEL 307 E F + + ++ K A KAG++ SAH +R A+ + + G L Sbjct: 186 KISEFIFATSTGKPIDRIFTHRMIKKCAEKAGIDPKTSAHWLRHSHASHAINNGCNVRLL 245 Query: 308 MATYGWKTVDQAETYTK 324 + G ++ E Y Sbjct: 246 QESLGHSKLETTEKYLH 262 >gi|82703659|ref|YP_413225.1| tyrosine recombinase XerC [Nitrosospira multiformis ATCC 25196] gi|82411724|gb|ABB75833.1| tyrosine recombinase XerC subunit [Nitrosospira multiformis ATCC 25196] Length = 318 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 43/271 (15%), Positives = 89/271 (32%), Gaps = 18/271 (6%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--- 127 L S Y L+ + S+ D ++ S + HIR + Sbjct: 25 AELASAYLAYLSVTRRLSPLTCESYGRDLDVLMNLSRGIALEHLQIHHIRRFLAQLHANG 84 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + S + L++ R L+ + R A NPC V PK R + ++ + F + Sbjct: 85 FSGRSLARMLSAWRGLYNYLARHHGYACNPCAGVRAPKSPRSLPRTLSPDEALKLLEFDT 144 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQ---------HLQNNIFSIKTQKTGTIITV 235 + + FE SGLR ++ + + + G+ Sbjct: 145 PDLVALRDKAMFELCYSSGLRLAELANLKPEDLSLAEGIVRVTGKGNKTRDVPVGSKAMQ 204 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFS 293 + + + + G+ F++ + ++ K +A K G++ H +R Sbjct: 205 VVREWIKQRATLAKPGETGLFLSRHGRNISRRSIDQRLKIQAVKQGISGRIHPHVLRHSF 264 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324 A+ + + G ++ + YT Sbjct: 265 ASHVLQSSGNLRAVQEMLGHASISTTQVYTH 295 >gi|53725157|ref|YP_102186.1| site-specific tyrosine recombinase XerD [Burkholderia mallei ATCC 23344] gi|121601112|ref|YP_992015.1| site-specific tyrosine recombinase XerD [Burkholderia mallei SAVP1] gi|161723208|ref|YP_107488.2| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei K96243] gi|52428580|gb|AAU49173.1| tyrosine recombinase XerD [Burkholderia mallei ATCC 23344] gi|121229922|gb|ABM52440.1| tyrosine recombinase XerD [Burkholderia mallei SAVP1] Length = 305 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 44/275 (16%), Positives = 84/275 (30%), Gaps = 26/275 (9%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT----TKHIRSGVESRKHTPSSA 133 + + L+ N+ ++ + + +S+ Sbjct: 25 WLEH----GLSRNTLDAYRRDLQLFAQWLAARHAASVDHASEPTLTEYIAARSDGKATSS 80 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--- 190 + L+ R + WAVR+ A++P L + K+ ++ ++ + + Sbjct: 81 NRRLSVFRRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALLAAPDVDTPLG 140 Query: 191 -QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT 248 + R E + SGLR S+ + N ++ V + + Sbjct: 141 LRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVPFGEVAHGWIERY 200 Query: 249 PIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296 F+ M QF K A +A V + S H +R AT Sbjct: 201 LRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRVHLSPHTLRHAFATH 260 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 + GA + G + + YT A R RL Sbjct: 261 LLNHGADLRVVQLLLGHSDISTTQIYTHVA-RERL 294 >gi|163788404|ref|ZP_02182850.1| tyrosine type site-specific recombinase [Flavobacteriales bacterium ALC-1] gi|159876724|gb|EDP70782.1| tyrosine type site-specific recombinase [Flavobacteriales bacterium ALC-1] Length = 376 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 41/256 (16%), Positives = 84/256 (32%), Gaps = 9/256 (3%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137 Y A N+ S+ F+ I + +I +R+ + S Sbjct: 110 YLDKLQLKKYANNTVKSYILAFETFINYHKAKELIQINENDVRNYILKLIQENKSDSYIN 169 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197 ++ + K+ N +ERP++ + + +KED+ + + + + + Sbjct: 170 IAINSI-KFYYESVLGMPNRFYQIERPRKAKKLPKVLSKEDVLKVITNTN-NLKHKCIVS 227 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPDGFMKLLAMTPIGKETF 255 L SG+R ++ + + + I+ K L +K L + Sbjct: 228 LLYSSGIRRNELIHLKISDIDSKRMLIRIDAAKGKKDRYTLLSHALLKDLRDYYKQWKPE 287 Query: 256 FINN---DKQKMNATQFSIWFKAKATKA--GVNKSAHGVRKFSATISADAGATAHELMAT 310 ++ +A K A KA + + H +R AT + G ++ Sbjct: 288 KYIFEGLYGKQYSAQSVGQIVKNAAIKARIQITVTPHMLRHSFATHLLEDGVDIRQIQVL 347 Query: 311 YGWKTVDQAETYTKGA 326 G + E YT A Sbjct: 348 LGHSSTKTTEIYTHVA 363 >gi|167754410|ref|ZP_02426537.1| hypothetical protein ALIPUT_02704 [Alistipes putredinis DSM 17216] gi|167659035|gb|EDS03165.1| hypothetical protein ALIPUT_02704 [Alistipes putredinis DSM 17216] Length = 379 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 55/370 (14%), Positives = 113/370 (30%), Gaps = 39/370 (10%) Query: 5 LRLPPFVTKERTRHGKIIYYFRK---GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61 ++ P + +++ +G + Y G L A A + I Sbjct: 4 IKEPIRIRRKKLTNGNVSLYLDIYLNGKREYEFLKLYLIPEKTKADREANRQTLQLANSI 63 Query: 62 NSPR-----------KKPTTLKWLISEYRKSAHWGSL-AVNS--RISFESYFDQIIRK-- 105 + R K L +Y ++ L A ++ +++S + + Sbjct: 64 KARRIVEVQNGEHGFKSAYASDTLFFDYYRAMCARRLGAESTGNWGNWKSCLKHLQKYEP 123 Query: 106 SGDFDYRKITTKHIR---------------SGVESRKHTPSSAIQFLTS---MRVLFKWA 147 + + +IT + ++ + K P S ++ +R A Sbjct: 124 NERIRFSQITQEWVQGFRDYLEKDACAWSCDERDRIKDHPLSRNSRVSYFNKLRACLNQA 183 Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCS 207 + INP VE K + T E++Q+ E + AF F +GLR S Sbjct: 184 YEDRIIPINPMRGVEGFKAEEGTRMYLTIEEVQRLAQTECEYPAIKRAFLFSCLTGLRRS 243 Query: 208 DSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT 267 D R + + + + A + + + + Sbjct: 244 DVIRLTWGDVHQQGEFTRIIFKQKKTSGQEYLDIPPQAAELMGERGKDAEHIFPNIHSPS 303 Query: 268 QFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 + K +AG++K + H R A + D G + + G + + + Y K Sbjct: 304 CTNETIKRWVLRAGIHKDITFHCGRHTFAVMMLDLGTDIYTVSKLLGHRELSTTQIYAKV 363 Query: 326 ADRIRLGIKN 335 D+ + Sbjct: 364 LDKNKQAAVA 373 >gi|259415887|ref|ZP_05739807.1| phage integrase [Silicibacter sp. TrichCH4B] gi|259347326|gb|EEW59103.1| phage integrase [Silicibacter sp. TrichCH4B] Length = 317 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 43/293 (14%), Positives = 97/293 (33%), Gaps = 34/293 (11%) Query: 73 WLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSG---VESR 126 IS + + A N+ +++ + + ++ I + ++ Sbjct: 9 QWISTFLDAQAAELGAAHNTLLAYGRDLRNVTAWMAHKGTSFAQMRQSDIEAYLISCDAE 68 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + ++ + L++++ ++++A + + NP L ++ P R+ + + ++ + Sbjct: 69 GLSRATRARRLSAIKQIYRFAFEEGWRQDNPALQIKGPGREKSLPKTLDENEVDRLLGAA 128 Query: 187 S-------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238 + + E L +G+R S+ V + + + K G V L Sbjct: 129 RTVGRTEADRLRNTCLMELLYATGMRVSELVSLPVSAARGDPNMLLILGKGGKERMVPLS 188 Query: 239 DGFMKLLAMTPIGK----------------ETFFINNDKQKMNATQFSIWFKAKATKAGV 282 L+ + F + + + +F + K A GV Sbjct: 189 PPARMALSTWIEVRDAVEDKREGQGHKASRFLFPSRSKEGHLTRHRFYLLIKELAVAGGV 248 Query: 283 ---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 + H +R AT GA + A G + E YT D RL Sbjct: 249 SPEKVTPHTLRHAFATHLLQNGADLRAIQALLGHADIATTEIYTHVLD-ARLA 300 >gi|302879884|ref|YP_003848448.1| tyrosine recombinase XerC [Gallionella capsiferriformans ES-2] gi|302582673|gb|ADL56684.1| tyrosine recombinase XerC [Gallionella capsiferriformans ES-2] Length = 317 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 39/259 (15%), Positives = 83/259 (32%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMR 141 + + S+ + S ++ HIR + + S + L++ R Sbjct: 38 RRYSKLTAESYARDLAHLFELSTGLALNELKVSHIRRYIAQLHSSGLGGRSLARLLSAWR 97 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRLAFEF 198 + + +R NPC+ + PK + + + + ++ + + FE Sbjct: 98 GFYNYLLRDHGFTDNPCVGLRAPKSARALPQVLSPDQAVRMVDLPTDAPDSIRDKAMFEL 157 Query: 199 LLYSGLRCSDSCRAGVQHLQNNIF---SIKTQKTGTIITVELPDGFMKLLAMT------- 248 SGLR + + ++++I T K V L + L Sbjct: 158 FYSSGLRLMELIDLDAESIRSDITAGEVRVTGKGHKTRIVPLGGCAISALHEWLAVRPTL 217 Query: 249 -PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAH 305 IG+ F+ +++ + K K G+ H +R AT + Sbjct: 218 ANIGERALFVGARGARISPRVVQLRMKQWGIKQGITSSVHPHMLRHSFATHVLQSSGDLR 277 Query: 306 ELMATYGWKTVDQAETYTK 324 + G ++ + YT Sbjct: 278 AVQEMLGHASISTTQVYTH 296 >gi|325954400|ref|YP_004238060.1| Tyrosine recombinase xerC [Weeksella virosa DSM 16922] gi|323437018|gb|ADX67482.1| Tyrosine recombinase xerC [Weeksella virosa DSM 16922] Length = 294 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 48/284 (16%), Positives = 94/284 (33%), Gaps = 23/284 (8%) Query: 69 TTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127 + + + EY+ +A N+ S+ ++ ++ ++ T + V + Sbjct: 1 MSWEESLLEYQTYLKLEKHMANNTIESYMRDIKKL-QQFSPLLPQEHTYDSLVEFVHAMA 59 Query: 128 --HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ---- 181 ++ S + L+ ++ F + +E NP +E PK T+ T++++ + Sbjct: 60 KEYSQRSQARILSGLKSYFNYLQYEEIRQDNPTELLESPKIGTKLPDVLTEKEIDRLVDV 119 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240 EG + R E L GLR ++ + L I+ K V + Sbjct: 120 IDLSKPEGERNRAIIEMLYGCGLRVTELVNLRISDLFFEEGYIRVLGKGNKERLVPISPY 179 Query: 241 FMKLLAMTPIGKETFFINNDKQ-----------KMNATQFSIWFKAKATKAGVNK--SAH 287 +K + + + K + AG+ K S H Sbjct: 180 TIKYIDLYRNEIRKHQPIQPGYEDILFLNRRGRNITRVMIFTIIKELSIIAGIQKNISPH 239 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 R AT GA + G + + E YT D+ L Sbjct: 240 TFRHSFATHLLKNGADLRAIQQMLGHENIVTTEVYTH-IDQEHL 282 >gi|224368897|ref|YP_002603059.1| hypothetical protein HRM2_17930 [Desulfobacterium autotrophicum HRM2] gi|223691614|gb|ACN14897.1| hypothetical protein HRM2_17930 [Desulfobacterium autotrophicum HRM2] Length = 365 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 43/333 (12%), Positives = 95/333 (28%), Gaps = 33/333 (9%) Query: 12 TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + + +GK + + + + + + N R Sbjct: 35 VRIKLSNGKW------------KSKQVNTLELAKKVEAKFKTQSIEEDVFNIHRAPVI-- 80 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT-- 129 + S+Y A + + I KIT H++ + Sbjct: 81 DGVWSKYLTWASLNKRS--WIDDRIRWELHISAHLKGMKMDKITPSHVQDILNHMATKDT 138 Query: 130 -------PSSAIQFLTSMRVLFKWAVRQ---EYVAINPCLSVERPKRKTEGIRPWTKEDM 179 P++ Q L ++ +F W+++Q + + + + Sbjct: 139 PKGGHYAPATIKQVLVLIKRVFNWSMQQGLYQGGNPCKSVEAPMFDNRINNPLDKSGLRS 198 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----TIITV 235 + L +F LYSG R + + + Q ++ Sbjct: 199 LMSVLDTWNNERAILVIKFALYSGKRKGEVLSLTWDSVDFENHLLTLQAMNTKSKKAQSL 258 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSAT 295 L + M +L K + ++ F +K +AG++ H +R A+ Sbjct: 259 PLNNHCMTILERCRKLKVSDYVFPSTLGNYYNTFDETWKRIRKRAGISIRFHDLRHTYAS 318 Query: 296 ISADAG-ATAHELMATYGWKTVDQAETYTKGAD 327 A +G + L G T++ + Y + Sbjct: 319 YLASSGKVDIYTLKELLGHSTIEMTQRYAHLVN 351 >gi|302345052|ref|YP_003813405.1| putative tyrosine recombinase XerC [Prevotella melaninogenica ATCC 25845] gi|302149339|gb|ADK95601.1| putative tyrosine recombinase XerC [Prevotella melaninogenica ATCC 25845] Length = 294 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 41/275 (14%), Positives = 97/275 (35%), Gaps = 24/275 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVESRKHT 129 + ++ + + + + I++ + R + + I + +R+ +E Sbjct: 4 VEKFLDYIKFERNYSPMTVINYRKDLTEFERFYKELEPQLSWESIDSDIVRNWMEYMMDR 63 Query: 130 PSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ----- 181 +SA + L+++R +++A+R++ + +P ++ PKR+ + + +M++ Sbjct: 64 GNSASSVNRRLSALRSFYRFALRRKLIEKDPVHGLQGPKRQKTLPQFLKESEMERLLDSK 123 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELPDG 240 + + R +G+R S+ + + N T K V Sbjct: 124 MWTDSYKDVLERTIIITFYVTGIRLSELIGLDDKDIDNVTCEIKVTGKRNKQRIVPFGKE 183 Query: 241 FMKLLAMTPIGKET--------FFINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGVR 290 + A + FF ++M Q K +K +S H +R Sbjct: 184 LADVFAQYQEVRNATVKGDSKAFFQTEKGKRMTTAQVRTLVKKNLSKVSTLKKRSPHVLR 243 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 AT + A + G +++ E YT Sbjct: 244 HTFATAMLNHEAGLESVKKLLGHESLSTTEIYTHT 278 >gi|85713711|ref|ZP_01044701.1| phage integrase [Nitrobacter sp. Nb-311A] gi|85699615|gb|EAQ37482.1| phage integrase [Nitrobacter sp. Nb-311A] Length = 322 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 41/310 (13%), Positives = 90/310 (29%), Gaps = 34/310 (10%) Query: 55 TPKREYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF---- 109 E + P + + I+ + L+ + ++ Q + G Sbjct: 3 AKLAEPLPDPACAASDVGQQIARWLTHLRAERRLSAKTLEAYARDVRQCLMFLGQHWGEL 62 Query: 110 ----DYRKITTKHIRSGVESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162 + + IR+ + +R+ S ++ L +R ++ R+ + ++ Sbjct: 63 VTLERFAALEPGDIRAFMAARRAEDIGGRSLMRSLAGLRSFARFLEREGLGKVGALGAIR 122 Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL---------LYSGLRCSDSCRAG 213 PK +P ++F + R + + SGLR S++ Sbjct: 123 APKVGKSLPKPIQMSAAKRFADASERAGEDREPWIWARDAAVMALLYGSGLRISEALGLK 182 Query: 214 VQHLQNN---IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ-------K 263 + + + T K V + + L+ + Sbjct: 183 RRDVPLPGAGDVLVVTGKGNKTRMVPVLHNVLALIHEYVAMCPHSLSPDGPIFVGARGGP 242 Query: 264 MNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321 + A + G+ + H +R AT G + G ++ + Sbjct: 243 LRARIIQLVMARMRGALGLPDSATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQI 302 Query: 322 YTKGADRIRL 331 YT G D RL Sbjct: 303 YT-GIDSERL 311 >gi|284990526|ref|YP_003409080.1| LigA [Geodermatophilus obscurus DSM 43160] gi|284063771|gb|ADB74709.1| LigA [Geodermatophilus obscurus DSM 43160] Length = 397 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 55/344 (15%), Positives = 105/344 (30%), Gaps = 34/344 (9%) Query: 11 VTKERTRHGKIIYY--FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 +T+ G Y +R GR+ + S + +P + Sbjct: 5 ITRITLSDGSARYRARYRDPGGRQHERRFV--RKVDAQRWLDEATSALVTQTWTAPARGR 62 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK 127 T+ + S + ++ + + ++ G +T + V Sbjct: 63 VTVADWADRWLASQ--TGVKPSTLYRYGNLLRTHVLPTWGKHQLADVTHADVAVWVAKLL 120 Query: 128 HTPSSAIQFLTSMRVL---FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 S+A + RV AVR + NP V P+ R T +++++ Sbjct: 121 GQGSAAGTVRQAHRVFSLLLGLAVRDGRIPRNPAERVPLPRVIRSEPRFLTHDEVERLAD 180 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT---------------QKT 229 L Y+GLR + V+ + + KT Sbjct: 181 AAGAEGD---VIRLLAYTGLRFGEMAALRVRRVDFLRRRLTIAEAVTEVGGRLEFGTPKT 237 Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW----FKAKATKAGV-NK 284 TV LP + LA GK+ + + W F AG+ + Sbjct: 238 HQQRTVPLPATLAEPLARRCEGKQGDDLLVTTASGTVLRLRNWRRVVFDPAVRAAGLSDV 297 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD 327 + H +R +A+++ +GAT + G + + Y+ D Sbjct: 298 TPHDLRHTAASLAVSSGATVKAVQRMLGHASAAMTLDVYSGLVD 341 >gi|83589876|ref|YP_429885.1| tyrosine recombinase XerD subunit [Moorella thermoacetica ATCC 39073] gi|83572790|gb|ABC19342.1| tyrosine recombinase XerD subunit [Moorella thermoacetica ATCC 39073] Length = 313 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 39/286 (13%), Positives = 79/286 (27%), Gaps = 28/286 (9%) Query: 70 TLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRS-- 121 T + + + + ++ + +Q + +R Sbjct: 5 TFGEALEGFLLYLKGERQASPCTVDAYRADIEQFAAFVAGRAGQEAGPAAVDIWMVRRYL 64 Query: 122 -GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + SS + L ++R +++ +R V +P + P+R+ + +M+ Sbjct: 65 GWLNQLGQQRSSMNRKLAALRAFYRFLLRAGQVQSSPVALLSGPRREKRLPGCLSHAEME 124 Query: 181 QFKS---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE 236 + S G + R E L SG+R ++ L + K V Sbjct: 125 KLLSIPATTPLGLRDRAILETLYASGIRVAELVGMDQDDLDLVAGYARVLGKGRRERVVP 184 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKM-------------NATQFSIWFKAKATKAGVN 283 L +K L KA + Sbjct: 185 LGRYAVKALENYLHRARPELAARRIPPEPRALFLNHLGGRLTTRGVRERLSHYVEKAALR 244 Query: 284 K--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 + S H +R AT + GA + G + + YT + Sbjct: 245 RGVSPHTIRHTFATHLLEGGADLRVVQELLGHIRLATTQIYTHISQ 290 >gi|78067906|ref|YP_370675.1| site-specific tyrosine recombinase XerC [Burkholderia sp. 383] gi|77968651|gb|ABB10031.1| Tyrosine recombinase XerC [Burkholderia sp. 383] Length = 306 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 46/288 (15%), Positives = 91/288 (31%), Gaps = 31/288 (10%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTP 130 I+ Y + L+ ++ + D++ + + +T +R + S + Sbjct: 6 IAAYLSNLKHVRQLSEHTLRGYTHELDELKKLANGRPLEALTAADMRGAVARAHSGGLSA 65 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFW 186 S L++ R ++W ++ + NP +V PKR + + +D M + Sbjct: 66 RSISHRLSAWRAFYRWLAQRIEMPANPVAAVRAPKRAKTLPKALSVDDASALMNAPLANT 125 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------GTIIT 234 +EG + E SGLR ++ V + Q + + Sbjct: 126 TEGIRDHAILELFYSSGLRLAELIGLDVMYTQADGYRSAGWLDLAEAEVTVRGKGNKERK 185 Query: 235 VELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--K 284 V + + L F++ +M+ K A AG+ Sbjct: 186 VPVGRKAIDALNAWLAVRGEFVKHDPHPLFVSVRGNRMSPGVVRERVKRAALTAGIPANV 245 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R AT + + G +V + YT D L Sbjct: 246 HPHVLRHSFATHVLQSSGDLRAVQELLGHASVSATQVYT-SLDFQHLA 292 >gi|332180702|gb|AEE16390.1| Tyrosine recombinase xerC [Treponema brennaborense DSM 12168] Length = 311 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 45/276 (16%), Positives = 92/276 (33%), Gaps = 26/276 (9%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK--------ITTKHIRSGVESRKHT 129 Y + AV + ++ + + +T + + + RK Sbjct: 20 YAELVSVERKAVMTAETYSGAVSLFLDWLQKKHPAESVEQALERVTVQDLLYYLVQRKTV 79 Query: 130 PS---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + + + ++++R + V + + N +ERPK + R + E ++ F + Sbjct: 80 GADELTIAKDISALRSFGNFLVARHVWSENCACLLERPKARRALPRVLSPEQVETFLNAI 139 Query: 187 ----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGF 241 G + R FE + GLR S++ +Q+L + K V D Sbjct: 140 DVSEPLGVRDRALFELIYSCGLRISEASGLLLQNLHLKERIVLVRGKGDKERIVPFGDAA 199 Query: 242 MKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRK 291 ++ L+ F+N ++ F+ ++GV+ H +R Sbjct: 200 LRWLSSWLSEYRPQLVGSRQIPYVFVNYKGMPLSRKGIWKRFQEIEVRSGVSAKVHTLRH 259 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 AT GA + G + + YT D Sbjct: 260 SFATHLLAGGADLRSVQELLGHSDLVTTQIYTHIDD 295 >gi|317153308|ref|YP_004121356.1| integrase family protein [Desulfovibrio aespoeensis Aspo-2] gi|316943559|gb|ADU62610.1| integrase family protein [Desulfovibrio aespoeensis Aspo-2] Length = 304 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 43/303 (14%), Positives = 90/303 (29%), Gaps = 30/303 (9%) Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD------------YR 112 R L + S + + ++ + R + Sbjct: 4 RTADLDLAGATEAFCASLSAEGRSPATIAAYRRDLALLARVAEKLAAGIICREITPGLLD 63 Query: 113 KITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 ++ + + E + +S + ++R F WA+ V NP S+ + + Sbjct: 64 QVFSSEAVADSERGPRSAASLHRMKAALRAFFAWAIDVGIVDDNPARSIRMHRLPRKLPV 123 Query: 173 PWTKEDMQQFK-----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227 T + ++ + R E LL +G+R + + + + ++ Sbjct: 124 FLTVGEKKRLLKELKGRTDFPAFRDRAMIEVLLGTGIRLGELAALDMDDIDLDAKHLRVW 183 Query: 228 ---------KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278 T + L + E F++N ++ Q + Sbjct: 184 AKGNVPQVKFIKTDLRTLLRRYLAERRRRGRPEMEALFLSNRDSRLCQRQIANRLAHWLR 243 Query: 279 KAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 KAG+ K + HG+R AT A + G + V + YT D + Sbjct: 244 KAGIEKELTPHGMRHTFATHLYGATNDLLVVQRALGHRDVSTTQIYTHLVDGQ--LEEAL 301 Query: 337 RRI 339 R+ Sbjct: 302 ERL 304 >gi|261393207|emb|CAX50826.1| tyrosine recombinase XerC [Neisseria meningitidis 8013] Length = 305 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 40/293 (13%), Positives = 85/293 (29%), Gaps = 30/293 (10%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD----------YRKITTKHIR 120 Y ++ + ++ ++ +++ + Sbjct: 6 FAAHFDAYLENIVREGKSEHTVAAYRRDLEELFALLAQMPSEAEGGVPQGLSQRDFTAAL 65 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + R + + L+S R W V + + +P ++ PK+ + +E + Sbjct: 66 RRLSQRGLNARTLARKLSSWRQYCVWLVERGLMRADPTADIKPPKQPERVPKALPQEWLN 125 Query: 181 QFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIIT 234 + +G + FE + SGLR S+ + + + T K Sbjct: 126 RMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQ 185 Query: 235 VELPDGFMKLLAMTPIGKETFFIN---NDKQKMNATQFSIWFKAKATKA-----GVNKSA 286 V L ++ L ++T + K A A G + S Sbjct: 186 VPLVGKSVEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHVSP 245 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 H +R A A + G ++ + YTK L + R+ Sbjct: 246 HMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK------LDFDHIARL 292 >gi|148210|gb|AAA67607.1| unknown [Escherichia coli str. K-12 substr. MG1655] Length = 298 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 41/278 (14%), Positives = 88/278 (31%), Gaps = 21/278 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SRK 127 + Y + L+ + ++++ + II + + + + + Sbjct: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +S L+++R F W V Q + NP V PK + +DM + Sbjct: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI 127 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243 + R E + +GLR S+ ++HL + K + + + Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRKPVA 187 Query: 244 LLAMTPIGKETFFINND-------KQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 + ++ F +D ++ +A F K G+ + H + A Sbjct: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRXSARNVQKRFAEWGIKQGLNNHVHPHKLXHSFA 247 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 T ++ + G + + YT D L Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 284 >gi|319761793|ref|YP_004125730.1| tyrosine recombinase xerd [Alicycliphilus denitrificans BC] gi|317116354|gb|ADU98842.1| tyrosine recombinase XerD [Alicycliphilus denitrificans BC] Length = 299 Score = 120 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 50/282 (17%), Positives = 89/282 (31%), Gaps = 25/282 (8%) Query: 74 LISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRK- 127 I + + L+ N+ ++ H+ +R Sbjct: 8 AIDSFLDALWLEDGLSRNTLAAYRRDLSLYAGWLAAQQPPLALDATAEHHLSGYFAARHA 67 Query: 128 -HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 +SA + LT +R F WA+R+ +A +P + + ++ + T+ ++ Sbjct: 68 QTRATSANRRLTVLRRYFHWALRERRIAQDPTVRLLAARQPLRVPKTLTQAQVEALLHAP 127 Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGF 241 G + R E + SGLR S+ L ++ G V + Sbjct: 128 DTATALGLRDRTMLELMYASGLRVSELVTLKTFQLGLTEGVLRITGKGGKERLVPFGEEA 187 Query: 242 MKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289 + L + F+ M+ F + K A AG+ S H + Sbjct: 188 RRWLERYLAEGRGAILAGRQTDDLFVTQRGSAMSRVMFWVIVKKCAQLAGITAPLSPHTL 247 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 R AT + GA + G + YT A R RL Sbjct: 248 RHAFATHLLNHGADLRVVQLLLGHADISTTTIYTHVA-RERL 288 >gi|262184376|ref|ZP_06043797.1| site-specific tyrosine recombinase XerC [Corynebacterium aurimucosum ATCC 700975] Length = 292 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 36/276 (13%), Positives = 86/276 (31%), Gaps = 17/276 (6%) Query: 71 LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITT-KHIRSGVESRKH 128 L+ I ++ + + + + S + + +F + + + + + Sbjct: 5 LEEAIEDFAEYQRIVRGRSEATVRGYCSDLRLLAPEVPEFAAFTLNSLREWLAHAVAEGK 64 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE-----DMQQFK 183 + S+ + ++R WA R+ Y+ + + PK + Sbjct: 65 SRSTLARRTAAVRAFSTWAAREGYLESDVAQRLATPKVGKHLPTVMSPTAAGELMGNAVS 124 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 + + EFL +G+R ++ V + + + + V D Sbjct: 125 TDEVHFLRDSAMLEFLYATGVRVAELVGLDVGDIDLSRRTARVTGKGNKQRVVPFGDAAH 184 Query: 243 KLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFS 293 L F+ +++A Q + A G + HG+R + Sbjct: 185 DALCAWLKTGRPELAGETEAVFVGTRGGRIDARQVRRVVERAAQVTGAPGLTPHGLRHSA 244 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + GA + G ++ + YT + + Sbjct: 245 ATHLLEGGADLRIVQELLGHSSLQTTQVYTHVSAQR 280 >gi|86359460|ref|YP_471352.1| site-specific tyrosine recombinase XerC [Rhizobium etli CFN 42] gi|86283562|gb|ABC92625.1| tyrosine site-specific integrase/recombinase protein [Rhizobium etli CFN 42] Length = 311 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 43/284 (15%), Positives = 89/284 (31%), Gaps = 30/284 (10%) Query: 77 EYRKS-AHWGSLAVNSRISFESYFDQIIRKS-GDF-------DYRKITTKHIRSGVESRK 127 + ++ A L+ ++ ++E Q + G D R++ +R+ + +R+ Sbjct: 18 AWLENLARERRLSEHTLDAYERDTRQFLTFLTGHLAGPATLGDIRELRPADLRAFLAARR 77 Query: 128 HTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-- 182 S A + L +R L + ++ V ++ PK+ +P + Sbjct: 78 RQGSGARSLGRNLAGLRSLLRHLEKKGLVNAAGAGAIRSPKQPKSLPKPLSDTQAITIVS 137 Query: 183 -----KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------ 231 ++ L GLR S++ L +++ G Sbjct: 138 DEAQLHDEPWIAARDAAVMTLLYGCGLRISEALNLVPADLPKGATTLRITGKGNKTRLVP 197 Query: 232 --IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAH 287 + + + + L E F K+ A + G+ + H Sbjct: 198 LLPVVFDAVEKYRALCPYDLESGEPLFRGARGGKLQAAIIQRAMQKLRGALGLPETATPH 257 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +R AT G + G ++ + YT G D RL Sbjct: 258 ALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYT-GVDASRL 300 >gi|126466056|ref|YP_001041165.1| phage integrase family protein [Staphylothermus marinus F1] gi|126014879|gb|ABN70257.1| phage integrase family protein [Staphylothermus marinus F1] Length = 333 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 34/272 (12%), Positives = 72/272 (26%), Gaps = 28/272 (10%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP- 130 K ++ E+ + + ++ ++ S + G+ R IT + I R Sbjct: 20 KDILEEFIFTLEAAGASEDTIKAYRSAIKDFLEFLGEKPLRDITLRDIILWRNYRLKHGF 79 Query: 131 ------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 ++ + + F+W + + E + Sbjct: 80 SKAKTKDKKKWQTTLHYYSMFLNRFFEWLGLNFRIPRIRKPPRKIHVLNDEEVHKL---- 135 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVE 236 +L LL +GLR + V + +I K V Sbjct: 136 -----LESIRDPLDKLILSILLDTGLRSKELLGIRVSDIDFENRTITITSTKYDKERKVL 190 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFS 293 + M+L+ + + + K +A + H +R Sbjct: 191 VTSRTMELIRSWIKLNNLEKEDRLI-PLTYSGLYKRIKRLGRRASIPAWKIRPHILRHTF 249 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKG 325 AT + G + L G + + Y Sbjct: 250 ATQALRKGLSLPYLQRLLGHSDIKTTQIYLHV 281 >gi|77464133|ref|YP_353637.1| site-specific tyrosine recombinase XerC [Rhodobacter sphaeroides 2.4.1] gi|126462976|ref|YP_001044090.1| site-specific tyrosine recombinase XerC [Rhodobacter sphaeroides ATCC 17029] gi|77388551|gb|ABA79736.1| putative site-specific recombinase [Rhodobacter sphaeroides 2.4.1] gi|126104640|gb|ABN77318.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029] Length = 306 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 39/288 (13%), Positives = 80/288 (27%), Gaps = 28/288 (9%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFD--------QIIRKSGDFDYRKITTKHIRSG 122 + + + + ++ ++ + + G + +R+ Sbjct: 10 RDALEAWLTHQRAIEGASAHTIRAYTADVTGWLAFLAGHLGEGYGLKRLASVPHADLRAW 69 Query: 123 VESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + + S + L+++R W +E V LS PK + + RP ++ D Sbjct: 70 MAHERARGLGARSLARSLSAVRQFTGWLAEREGVDATAVLSARGPKFRRKLPRPLSEADA 129 Query: 180 QQFKSF-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 + S ++ L GLR S++ T K Sbjct: 130 KALLSTVAEDAAEDWIRARDLAVVTLLYGCGLRISEALGLPGTAHPLPEVLRITGKGDKE 189 Query: 233 I------TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--K 284 L + F +N + + G+ Sbjct: 190 RLVPSLPVARAAVARYAALCPFDLASGVLFRGARGGPLNPRLVARTMERARATLGLPPTA 249 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 + H +R AT +AG + G ++ + YT D RL Sbjct: 250 TPHALRHSFATHLLNAGGDLRSIQELLGHASLSTTQVYT-AVDGARLM 296 >gi|167718388|ref|ZP_02401624.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei DM98] Length = 299 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 44/275 (16%), Positives = 84/275 (30%), Gaps = 26/275 (9%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT----TKHIRSGVESRKHTPSSA 133 + + L+ N+ ++ + + +S+ Sbjct: 19 WLEH----GLSRNTLDAYRRDLQLFAQWLAARHAASVDHASEPTLTEYIAARSDGKATSS 74 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--- 190 + L+ R + WAVR+ A++P L + K+ ++ ++ + + Sbjct: 75 NRRLSVFRRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALLAAPDVDTPLG 134 Query: 191 -QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT 248 + R E + SGLR S+ + N ++ V + + Sbjct: 135 LRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVPFGEVAHGWIERY 194 Query: 249 PIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296 F+ M QF K A +A V + S H +R AT Sbjct: 195 LRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRVHLSPHTLRHAFATH 254 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 + GA + G + + YT A R RL Sbjct: 255 LLNHGADLRVVQLLLGHSDISTTQIYTHVA-RERL 288 >gi|220920293|ref|YP_002495594.1| integrase family protein [Methylobacterium nodulans ORS 2060] gi|259710433|sp|B8I9N8|XERC_METNO RecName: Full=Tyrosine recombinase xerC gi|219944899|gb|ACL55291.1| integrase family protein [Methylobacterium nodulans ORS 2060] Length = 322 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 36/300 (12%), Positives = 86/300 (28%), Gaps = 34/300 (11%) Query: 71 LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSG------DFD-YRKITTKHIRSG 122 L+ + + + N+ ++ Q + D + + +R+ Sbjct: 16 LREAAAAWLAVLKTERRFSENTVEAYGRDLRQFLAHLARSGAAPDIPALVALKPRDLRAF 75 Query: 123 VESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + +R+ + S ++ L ++R + R+ + ++ +V PK + RP Sbjct: 76 MAARRAEGVSGRSLMRALAALRSFARHLDREGHGTVSALSAVRSPKVERRLPRPLPVAAA 135 Query: 180 QQFKSFWSEGSQPRLAFEFL---------LYSGLRCSDSCRAGVQ--HLQNNIFSIKTQK 228 S + R + +GLR ++ + + + K Sbjct: 136 VAMASPDIRAGEDRPDWVLARDAAVLALLYGAGLRIGEALGIRRKDAPVGDIDTLTILGK 195 Query: 229 TGTIITVELPDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKAG 281 V + +A F+ ++ + + G Sbjct: 196 GQKTRMVPVIAPVQAAVADYLAVCPHPLPPDGPLFVGQKGGPLSPRIVQLAVASLRGALG 255 Query: 282 VN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL--GIKNSR 337 + + H +R AT + G ++ + YTK D RL + Sbjct: 256 LPDSATPHALRHSFATHLLARQGDLRAIQDLLGHASLATTQVYTK-VDSARLLSAFDAAH 314 >gi|15889883|ref|NP_355564.1| site-specific tyrosine recombinase XerC [Agrobacterium tumefaciens str. C58] gi|34222928|sp|Q8UC70|XERC_AGRT5 RecName: Full=Tyrosine recombinase xerC gi|15157830|gb|AAK88349.1| site-specific recombinase [Agrobacterium tumefaciens str. C58] Length = 315 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 43/296 (14%), Positives = 87/296 (29%), Gaps = 35/296 (11%) Query: 70 TLKW--LISE---YRKSAH-WGSLAVNSRISFESYFDQIIRKS--------GDFDYRKIT 115 T L++E + + LA N+ ++E Q +R D + Sbjct: 10 TFAEPDLLNERQSWLATLAGERRLADNTVEAYERDTRQFLRFLTGYIGRPAAIRDIADLR 69 Query: 116 TKHIRSGVESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 +R+ + +R+ + A + L +R L ++ V ++ PK+ + Sbjct: 70 PVDLRAFLANRRKEGAGARSLGRHLAGLRSLLHHLQKKGLVNAAGATAMRAPKQPKSLPK 129 Query: 173 PWTKEDMQQFKSF-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225 P T + + ++ L GLR S++ S++ Sbjct: 130 PLTDRQALKITTAEAQLNEEPWIAARNAAVLSLLYGCGLRISEALGLTPADFPPGTRSLR 189 Query: 226 TQKT-GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-------FSIWFKAKA 277 V L + + ++ + A + Sbjct: 190 ITGKGNKTRIVPLLAVVTEAVDTYRKLCPYALAADEPMFLGARGGKLQPAIIQREMQKLR 249 Query: 278 TKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 G+ + H +R AT G + G ++ + YT G D RL Sbjct: 250 GAFGLPENATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYT-GVDTARL 304 >gi|266620141|ref|ZP_06113076.1| tyrosine recombinase XerD [Clostridium hathewayi DSM 13479] gi|288868265|gb|EFD00564.1| tyrosine recombinase XerD [Clostridium hathewayi DSM 13479] Length = 323 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 34/275 (12%), Positives = 87/275 (31%), Gaps = 29/275 (10%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSM 140 +L+ + +++S + + Y I I ++K +P S + S+ Sbjct: 23 RNLSGKTIYAYKSDLLCMFTWLNENKYESINPHSISDYFLYLQNNKKLSPRSIRRKYVSI 82 Query: 141 RVLFKWAVRQEYVAINPCL-SVERPKRKTEGIRPWTKEDMQQ-------------FKSFW 186 + F + ++ V S + + R +K ++ Q + Sbjct: 83 KQFFHYINVEKGVNEIFMKFSSRKFQLPKSLPRTLSKMEVNQLIATVSKEYKSASTDFYR 142 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQH---------LQNNIFSIKTQKTGTIITVEL 237 + E L GLR + ++ + + +I + Sbjct: 143 RLCLRDMCIIEILFCLGLRIGEVAALNIEDYDSGEASFLIHGKGNKERMLFISSITVNQK 202 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSAT 295 +++ + + F+N ++++ F A + + H +R AT Sbjct: 203 LQKWIRTRQEFNLQDDALFVNKYGKRLSIYSIENLFYKYRELAHINSEATPHYLRHSFAT 262 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 + GA + G ++ + YT+ + + + Sbjct: 263 QLLNNGADIRAVQDILGHSSIVTTQIYTEVSLKRK 297 >gi|170289596|ref|YP_001739834.1| integrase family protein [Thermotoga sp. RQ2] gi|281413176|ref|YP_003347255.1| integrase family protein [Thermotoga naphthophila RKU-10] gi|170177099|gb|ACB10151.1| integrase family protein [Thermotoga sp. RQ2] gi|281374279|gb|ADA67841.1| integrase family protein [Thermotoga naphthophila RKU-10] Length = 253 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 38/260 (14%), Positives = 82/260 (31%), Gaps = 21/260 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSS 132 + EY + + + + S + + +T + + + + K+TP++ Sbjct: 1 MDEYLEYLKVVKKRSERTLYQYRSILREF------TRFEPVTPETWKEYLNTISKNTPAT 54 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 L ++ W + + I E + + + D + + S Sbjct: 55 QRNKLVVVKNYLNWKADRGLLNIEERFWNEAEPPRHTVLPKAIELDEVRRIIEACDNSLY 114 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250 R F+ L +G+R S+ V + K + + ++ L + Sbjct: 115 RAIFKVLANTGMRVSEIVNLSVHDISVNETARIRIKGKGNKERIINISKELVEELMNSGF 174 Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELM 308 ++ K + K A KAG+ K + H R A + G +++ Sbjct: 175 FEK---------KPSVRSIQRAVKRYARKAGIKKKVTPHIFRHSFAVALIERGVPLNKIQ 225 Query: 309 ATYGWKTVDQAETYTKGADR 328 A G + Y K A Sbjct: 226 ALLGHANISTTSIYLKIASE 245 >gi|194333561|ref|YP_002015421.1| tyrosine recombinase XerD [Prosthecochloris aestuarii DSM 271] gi|194311379|gb|ACF45774.1| tyrosine recombinase XerD [Prosthecochloris aestuarii DSM 271] Length = 304 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 40/265 (15%), Positives = 87/265 (32%), Gaps = 25/265 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHTP---SSAIQFLTS 139 + +VN+R S+ + + + I IR + + T S + +++ Sbjct: 23 RNFSVNTRQSYTNDLSRYLLYMQQQQKAVESIKLDDIREFIHTLSATGMEARSIARNISA 82 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-------GSQP 192 +R L K+ V ++ V +N ++ +PK + T ++ + + Sbjct: 83 IRSLHKFLVAEKIVQVNETNNLRQPKPLKALPKVLTHDEAFKLLDAPLAKDSSSRYALRD 142 Query: 193 RLAFEFLLYSGLRCSDSCR-AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251 + EFL +G+R S+ + F K V + + + Sbjct: 143 KAILEFLYATGVRVSELVDVCQNNCFLDEGFIRIFGKGSKERLVPIGSSAVSWIKRYLDE 202 Query: 252 KETFFINNDKQ----------KMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISAD 299 N+ ++ + AG++K+ H +R AT + Sbjct: 203 LRMRIANDRSADFLFLNARGGRLTRMTVYNIVTHYSLIAGISKTISPHTLRHTFATHLLE 262 Query: 300 AGATAHELMATYGWKTVDQAETYTK 324 GA + G ++ + YT Sbjct: 263 GGADLRAVQEMLGHSSILATQIYTH 287 >gi|193212286|ref|YP_001998239.1| tyrosine recombinase XerD [Chlorobaculum parvum NCIB 8327] gi|193085763|gb|ACF11039.1| tyrosine recombinase XerD [Chlorobaculum parvum NCIB 8327] Length = 304 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 49/282 (17%), Positives = 92/282 (32%), Gaps = 28/282 (9%) Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVES 125 TL ++ Y + + N+R S+ + + + + T HIR +E Sbjct: 9 RGTLDTFLN-YLTIE--RNFSGNTRESYLNDLGRYLAHLQGQQVKPEEATPDHIRQFIEE 65 Query: 126 RKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 SS + ++++R K+ + + NP ++ +PK T E+M Sbjct: 66 LHDIGLEASSVARNISAIRSYHKFLLAERIAQANPAENIHQPKLARTLPSVLTVEEMMAL 125 Query: 183 KSFWSEG-------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIIT 234 + + E L +G+R S+ G +L + I+ Sbjct: 126 LEAPLRRHPPGSFMLRDKAMLELLYATGIRVSELIGLGKLNLYLDEGFIRVFGKGSKERL 185 Query: 235 VELPDGFMKLLAMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKAGVNK 284 V + K L + N+ K++ + A AG+ K Sbjct: 186 VPVGRNATKWLKRYLEELRPGMVSATSKDVLFLNSRGGKLSRMSAWNIVRQHAIIAGIEK 245 Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 S H R AT + GA + G ++ + YT Sbjct: 246 PISPHTFRHSFATHLLEGGADLRAVQEMLGHSSIIATQIYTH 287 >gi|16127236|ref|NP_421800.1| integrase/recombinase XerD [Caulobacter crescentus CB15] gi|221236037|ref|YP_002518474.1| integrase/recombinase [Caulobacter crescentus NA1000] gi|34223000|sp|Q9A437|XERD_CAUCR RecName: Full=Tyrosine recombinase xerD gi|13424644|gb|AAK24968.1| integrase/recombinase XerD [Caulobacter crescentus CB15] gi|220965210|gb|ACL96566.1| integrase/recombinase (XerD/RipX family) [Caulobacter crescentus NA1000] Length = 305 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 41/282 (14%), Positives = 91/282 (32%), Gaps = 27/282 (9%) Query: 72 KWLISEYRKSAHWGSLAV-NSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVES--- 125 + + + A N+ ++ + D + I + + Sbjct: 5 EAWADAFLEMMAVERAAARNTLTAYGKDLEDARGFLSRSGHDLHDADAETIEAYFQDLGA 64 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 R +P++A + +++R +++ + + + +P V PK + ++++++ + Sbjct: 65 RGLSPATAARRRSAVRQFYRFVLGEGWRTDDPSRRVAAPKAGRPLPKVLERDEIERLLAA 124 Query: 186 WSE-----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPD 239 S G + E + SGLR S+ + L + I K G L D Sbjct: 125 ASAKDSAQGLRLACMIELIYASGLRISELLALPLLALARDPAYLIVKGKGGKERLAPLND 184 Query: 240 GFMKLLAMT------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--- 284 + F ++ + + A AG+++ Sbjct: 185 AARAAVKAYLVERPAFLPKGQKDSPWLFPSRGATGRLTPRRVGQLLEDAAIAAGIDRQKV 244 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 S H +R AT + GA + G + + YT A Sbjct: 245 SPHVLRHAFATHLLEGGADLRVIQTLLGHADIATTQIYTHVA 286 >gi|114561634|ref|YP_749147.1| tyrosine recombinase XerC [Shewanella frigidimarina NCIMB 400] gi|114332927|gb|ABI70309.1| tyrosine recombinase XerC [Shewanella frigidimarina NCIMB 400] Length = 299 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 28/267 (10%), Positives = 80/267 (29%), Gaps = 20/267 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140 L+ + ++ ++ + + + + + + + + +P S L+++ Sbjct: 18 RQLSAYTVRNYLFELRRVEDMLAESTQLIEVSRDQLQSVMATLHRKGLSPRSLSLCLSAL 77 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRLAFE 197 + F + +R+ V ++P ++ PK+ + + + S + + + E Sbjct: 78 KQFFDFLLREGAVTVSPAQTLSAPKQNKPLPKNMDVDAVSHLLSIEGDDPLSLRDKAIME 137 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF 256 SGLR ++ ++ + K V + + + + Sbjct: 138 LFYSSGLRLAELASLDCVDIKFDQSEVKVMGKGSKQRVVPIGQVALTAIKTWLNCRNQLS 197 Query: 257 INN---------DKQKMNATQFSIWFKAKAT--KAGVNKSAHGVRKFSATISADAGATAH 305 ++++ V H +R AT ++ Sbjct: 198 CVEAGDALFVSSQGKRLSHRSIQARMAKWGQEQAMAVKVHPHKLRHSFATHMLESSQDLR 257 Query: 306 ELMATYGWKTVDQAETYTKGADRIRLG 332 + G + + YT D L Sbjct: 258 AVQELLGHANLSTTQIYT-SLDFQHLA 283 >gi|239636270|ref|ZP_04677272.1| tyrosine recombinase XerC [Staphylococcus warneri L37603] gi|239597625|gb|EEQ80120.1| tyrosine recombinase XerC [Staphylococcus warneri L37603] Length = 297 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 37/265 (13%), Positives = 91/265 (34%), Gaps = 20/265 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTS 139 + ++ S+ Q D K R+ + S+ ++ + +++ Sbjct: 16 RHFSDHTLKSYHDDIVQFNDFLYQESLDLNDFEYKDARNYLSFLYSKNLKRTTVSRKIST 75 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLA 195 +R +++ + Q+ +NP + + PK++ + + +E+M+ +G + ++ Sbjct: 76 LRTFYEYWMTQDESVVNPFVQLVHPKKEQYLPQFFYEEEMEALFKTVDTDSKKGMRDKVI 135 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLAMT------ 248 E L +G+R S+ Q L K + + + + Sbjct: 136 LELLYATGIRVSELVHIKTQDLDMKLPGVKVLGKGNKERFIPFGEFCKQSIERYLKEFKP 195 Query: 249 --PIGKETFFINNDKQKMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGATA 304 + + +N Q + + +GV N H +R AT + GA Sbjct: 196 LKHVDHDYLIVNMQGQPITERGVRYVLNDVVKRTSGVTNIHPHKLRHTFATHLLNQGADL 255 Query: 305 HELMATYGWKTVDQAETYTKGADRI 329 + + G + YT +++ Sbjct: 256 RTVQSLLGHVNLSTTGKYTHVSNQQ 280 >gi|238028907|ref|YP_002913138.1| site-specific tyrosine recombinase XerC [Burkholderia glumae BGR1] gi|237878101|gb|ACR30434.1| Site-specific recombinase XerC [Burkholderia glumae BGR1] Length = 306 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 46/288 (15%), Positives = 88/288 (30%), Gaps = 31/288 (10%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 I+ Y L+ ++ + + + +T +RS V SA Sbjct: 6 IAAYLSYLQHVRQLSAHTLRGYAHELAALTAFASGRPLASLTAADMRSAVARAHAGGLSA 65 Query: 134 I---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFW 186 L++ R ++W ++ + NP +V PKR + + +D M+ Sbjct: 66 RSIAHRLSAWRAFYRWYAQRVEMPANPVATVRAPKRARALPKALSVDDANTLMESAFPDT 125 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG------------TIIT 234 EG + R E SGLR ++ V ++ + + Sbjct: 126 PEGLRDRAIVELFYSSGLRLAELVGLDVHYVNADGYRSAGWLDRGEAELSVLGKGGKERK 185 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKAGVN--K 284 V + ++ L +E + + +M K A AG+ Sbjct: 186 VPVGRKALEALDAWLAVREGWVRGDPHPLFLSVRGNRMAPGVVRERVKRAARVAGIPANV 245 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R AT + + G ++ + YT D L Sbjct: 246 HPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYT-SLDFQHLA 292 >gi|217975611|ref|YP_002360281.1| integrase family protein [Shewanella baltica OS223] gi|217500806|gb|ACK48858.1| integrase family protein [Shewanella baltica OS223] Length = 376 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 45/334 (13%), Positives = 95/334 (28%), Gaps = 11/334 (3%) Query: 21 IIYYFRKGHGRRIR-LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79 F+ R++ + ++ T A + A R + TL E+ Sbjct: 43 YYVRFQYQGLRQLHVIGNANDITLDDARLEARKHIDALRYGVVREPAPSLTLCAFAEEFF 102 Query: 80 KSAHWGSLAVNSR-ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138 ++ S + I GD +T +HI + + A + L Sbjct: 103 PRY-ARHWKPSTLLNSQRGFTRHIAPVLGDVPLAALTRQHIEQWFDGMHASKGMANRLLP 161 Query: 139 SMRVLFKWAVRQEYVA-----INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193 + V+ + A EY + + K S Sbjct: 162 LLSVMMQQAEVYEYRPAQSNPCKGFKRYKSTHSERYLSEEELKRLWLALDSHEKASPVAV 221 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253 + L+ +G RC++ C + + + KTG L + + Sbjct: 222 MVLRLLILTGCRCNEVCSVKWADYRQGHWYLPDSKTGAKTVFLSSFARELLSDWPQVSEH 281 Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYG 312 F+ + Q +++ + + H +R A+I+ + G Sbjct: 282 LFWHQSPSQPFTPVCLDRFWRPFRETIHLNDVRIHDLRHTYASIAVKHNINILTIGRLLG 341 Query: 313 WKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346 + YT A R + + +S ++ + Sbjct: 342 HALPETTLKYTHLA--KRDVQQAANVVSQLIAGE 373 >gi|323137229|ref|ZP_08072308.1| integrase family protein [Methylocystis sp. ATCC 49242] gi|322397587|gb|EFY00110.1| integrase family protein [Methylocystis sp. ATCC 49242] Length = 316 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 45/308 (14%), Positives = 90/308 (29%), Gaps = 37/308 (12%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGV---ESRKH 128 + + A N++ ++ I + +T+ +R+ + E R Sbjct: 9 LDAFLDMLAAERGAAQNTQDAYRRDLADYIDFLRGQGTNPDDVTSDGVRAYLASLEPRGM 68 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + ++ + ++++R K+ + +P ++E P+R + ++ + S E Sbjct: 69 SAATVARRISAIRQFHKFLYVDRHRGDDPAAALEGPRRVRSAPGVMSVAEVDRLLSVARE 128 Query: 189 GS--------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-- 232 G + E L +GLR S+ + I + G Sbjct: 129 GLDDEKRPLRERLRAARLYALLETLYATGLRVSELVSLPKSAARARDPFITIRGKGGRER 188 Query: 233 ------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---- 282 + KLL T G + F GV Sbjct: 189 LAPLTDRAKSALADYRKLLDATAPGLAEGPFLFPADSDSGHLTRQAFARDLKMLGVVAGL 248 Query: 283 ---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 H +R A+ GA + G + + YT D + R + Sbjct: 249 SAAQVHPHALRHAFASHLLQNGADLRVVQELLGHADISTTQIYTHVLDERMRAM--VRDL 306 Query: 340 SSVVDSDD 347 + DS D Sbjct: 307 HPLSDSGD 314 >gi|283782472|ref|YP_003373227.1| tyrosine recombinase XerC [Pirellula staleyi DSM 6068] gi|283440925|gb|ADB19367.1| tyrosine recombinase XerC [Pirellula staleyi DSM 6068] Length = 323 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 43/313 (13%), Positives = 97/313 (30%), Gaps = 37/313 (11%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFD-YRKITTKHIRSGVESR 126 I ++ + A + S+ + G +IT +R V + Sbjct: 3 AAIGQFLRYLVVERGAAELTSKSYREDLTSLADYLTQAYGREPKPSEITPLDLRGYVSAL 62 Query: 127 KHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 +S + L S+R +K+A R+ NP + P++ + +++ + Sbjct: 63 HEAGYAKTSIARRLASLRTFYKFAQREGMADSNPAKPLRNPRKDRKLPHFLAGDELGKLL 122 Query: 184 SFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELP 238 G + R E L +GLR S+ + L + ++ + L Sbjct: 123 EAPPADDPAGLRDRAMLETLYSAGLRVSELVGMNDEDLDLDEGVVRIRGKGSKERLAPLG 182 Query: 239 DGFMKLLAMTPIGKE--------------------TFFINNDKQKMNATQFSIWFKAKAT 278 ++ + ++ F N +++ + + Sbjct: 183 SFALRAIKKWLAHRKLASISVSSTRKSASKAGHGTPVFTNKFGKRLTTRSVARMLEKYLK 242 Query: 279 KAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI-KN 335 G++ + H +R AT D GA + G K++ + YT + + + Sbjct: 243 LTGLDLRTTPHTLRHTFATHLLDRGADIRSVQELLGHKSLVTTQIYTHVSTAALKAVYER 302 Query: 336 SRRISSVVDSDDP 348 + + P Sbjct: 303 AHPRARNKSGRPP 315 >gi|305663679|ref|YP_003859967.1| integrase family protein [Ignisphaera aggregans DSM 17230] gi|304378248|gb|ADM28087.1| integrase family protein [Ignisphaera aggregans DSM 17230] Length = 368 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 44/300 (14%), Positives = 91/300 (30%), Gaps = 16/300 (5%) Query: 60 YINSPRKKPTTLKW----LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115 I+ R P T+ ++ + + S+ + + G R IT Sbjct: 7 RIDVGRAPPGTIDEDPRIVVERFLTVLEASGADEKTVKSYRAALNDFFSFIGWKPIRSIT 66 Query: 116 TKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 + R + + ++ + + L +E P + R Sbjct: 67 IDDVYRWRAERLRKGFPNAKYNDRRSRESTMYYYMLFLRRFFRWLGLDIEIPGVRRPRRR 126 Query: 173 PWT--KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQK 228 K + S L LL +GLR ++ + N ++ K Sbjct: 127 EIQTLKPEEISRLFNASRDLMDLLILSLLLETGLRAEEALSITYGDIDLHNREIRVRNAK 186 Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KS 285 G V + D +++L+ K ++ + K+ A +AG++ Sbjct: 187 YGEERIVFIGDLTLQVLSTITSIKPVAPDERVI-PISYSGLYKRLKSLAKRAGIDPQKVR 245 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345 H +R AT + G L G + + E Y R + + + S++ + Sbjct: 246 PHILRHTFATEALKKGLNIAYLQKILGHRDLKTTEIYLHLL-REDVKDQYLKSFRSILGN 304 >gi|282852712|ref|ZP_06262054.1| toxin-antitoxin system, toxin component, PIN family [Lactobacillus gasseri 224-1] gi|282556454|gb|EFB62074.1| toxin-antitoxin system, toxin component, PIN family [Lactobacillus gasseri 224-1] Length = 386 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 59/381 (15%), Positives = 131/381 (34%), Gaps = 51/381 (13%) Query: 11 VTKERTRHGKIIYYFRKGHGRRIRLPYPH--ESTFIPAYMSALTGSTPKREYINSP---- 64 +T+ +T++GK Y F+ G+ +Y AL ++ + Sbjct: 7 ITRYKTQNGKKRYRFKVYVGKDEETGNSIQARKQGFKSYDDALKSYFEIKDKVAKGTYTG 66 Query: 65 -RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG 122 K L + ++ ++ V++ + + +F I+ + G+ KITT + Sbjct: 67 NENKKHKFSELYEMWLENYK-NTVKVSTLSNTKLFFRLHILPELGNLYIEKITTFKCQKI 125 Query: 123 VESRKHT-PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE---- 177 V P + + +FK+AV + +A NP SV +PK + E Sbjct: 126 VNKWFKELPKTYKVYTNLASNIFKFAVNNDLIAKNPMKSVIKPKLQVEKKPFTNFYSKNE 185 Query: 178 -DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG------ 230 ++ ++ +G + + F L Y+G+R ++ + + +IK KT Sbjct: 186 LNIFLKEAKECKGLKVYMLFRLLAYTGMRRGEALALKWSDIDFSNQTIKINKTVTTAEHA 245 Query: 231 -----------TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT------------ 267 + T+ + +K L+ + ++ Sbjct: 246 ALIIGTPKTKASYRTIAIDRQTIKYLSGWRKEQRKQLFQLGFNALSDDQLIFSNGDNTLI 305 Query: 268 ---QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TY 322 W ++ + AG+ + HG R A++ +AG ++ G ++ Y Sbjct: 306 RQATVRKWDQSISKHAGLKYITVHGFRHTHASLLFEAGTPMQDVKERLGHSSITTTMNIY 365 Query: 323 TKGAD--RIRLGIKNSRRISS 341 T + + ++ + Sbjct: 366 THVTKSAKKKTADNFAQFMEG 386 >gi|221195834|ref|ZP_03568887.1| tyrosine recombinase XerD [Atopobium rimae ATCC 49626] gi|221184308|gb|EEE16702.1| tyrosine recombinase XerD [Atopobium rimae ATCC 49626] Length = 311 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 40/281 (14%), Positives = 86/281 (30%), Gaps = 24/281 (8%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKH 128 + E+ L+ N+ ++E + G + +T + + + + + Sbjct: 5 QALKEFLAYVAVERGLSHNTLDAYERDLNGYSDWLSSCGIHNPCAVTQQILETYIAELRE 64 Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQ 181 P+S + ++R ++ V ++ A +P + R ++E Q Sbjct: 65 IGLAPASVERHTAAIRNFHRFLVAEQICATSPADDLSSTARPLRLPDVISREKAAELLDQ 124 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDG 240 G + + E L GLR S+ V+ + + ++ V + Sbjct: 125 PFERSPRGIRDKAILEVLYGCGLRVSEVSGLEVRGVLLDEELLRVFGKGSKERVVPIFGT 184 Query: 241 FMKLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAGVN-KSAHGV 289 + L G F+ + + + A G+ H + Sbjct: 185 AQEALREYLEGARGAFLIHGQSPYVFLNRRGGRLSRQWIHTSVAAYGRAVGIENLHPHTL 244 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 R AT + GA + G + + YT DR Sbjct: 245 RHSFATHLLEGGADLRSVQELLGHVDISTTQLYTH-VDRSH 284 >gi|171320566|ref|ZP_02909590.1| tyrosine recombinase XerC [Burkholderia ambifaria MEX-5] gi|171094193|gb|EDT39276.1| tyrosine recombinase XerC [Burkholderia ambifaria MEX-5] Length = 306 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 43/288 (14%), Positives = 88/288 (30%), Gaps = 31/288 (10%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTP 130 I+ Y + L+ ++ ++ D++ + + +T +R + + + Sbjct: 6 IAAYLSNLKHVRQLSEHTLRAYTHELDELKKLAAGRPLDALTAVDMRGAVARAHAGGLSA 65 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 S L++ R ++W ++ + NP +V PKR + + +D G+ Sbjct: 66 RSIAHRLSAWRAFYRWLAQRIEMPANPVAAVRAPKRPKTLPKALSVDDASALMDAPLAGT 125 Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------GTIIT 234 + E SGLR ++ V + Q + + Sbjct: 126 TEGIRDHAILELFYSSGLRLAELVGLDVMYTQADGYRSAGWLDLAEAEVTVRGKGNKERK 185 Query: 235 VELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--K 284 V + + L F++ +M K A AG+ Sbjct: 186 VPVGRKAIDALNAWLAVRGEFVKHDPHPLFVSVRGNRMAPGVVRDRVKRAALAAGIPANV 245 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R AT + + G +V + YT D L Sbjct: 246 HPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQVYT-SLDFQHLA 292 >gi|330826574|ref|YP_004389877.1| Tyrosine recombinase xerC [Alicycliphilus denitrificans K601] gi|329311946|gb|AEB86361.1| Tyrosine recombinase xerC [Alicycliphilus denitrificans K601] Length = 299 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 50/282 (17%), Positives = 89/282 (31%), Gaps = 25/282 (8%) Query: 74 LISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRK- 127 I + + L+ N+ ++ H+ +R Sbjct: 8 AIDSFLDALWLEDGLSRNTLAAYRRDLSLYAGWLAAQQPPLALDATAEHHLSGYFAARHA 67 Query: 128 -HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 +SA + LT +R F WA+R+ +A +P + + ++ + T+ ++ Sbjct: 68 QTRATSANRRLTVLRRYFHWALRERRIAQDPTVRLLAARQPLRVPKTLTQAQVEALLHAP 127 Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGF 241 G + R E + SGLR S+ L ++ G V + Sbjct: 128 DTATALGLRDRTMLELMYASGLRVSELVTLKTFQLGLAEGVLRITGKGGKERLVPFGEEA 187 Query: 242 MKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289 + L + F+ M+ F + K A AG+ S H + Sbjct: 188 RRWLERYLAEGRGAILAGRQTDDLFVTQRGSAMSRVMFWVIVKKCAQLAGITAPLSPHTL 247 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 R AT + GA + G + YT A R RL Sbjct: 248 RHAFATHLLNHGADLRVVQLLLGHADISTTTIYTHVA-RERL 288 >gi|103487281|ref|YP_616842.1| phage integrase [Sphingopyxis alaskensis RB2256] gi|98977358|gb|ABF53509.1| phage integrase [Sphingopyxis alaskensis RB2256] Length = 303 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 53/296 (17%), Positives = 99/296 (33%), Gaps = 35/296 (11%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSGVESRKHT 129 I + + + N+ ++ +Q + G D + + + R + Sbjct: 7 IDRFLEMMAAERGASRNTLTAYRRDLEQAAERVKGPLGAADAAALR----QLMADYRSLS 62 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 SSA + L+++R F + + + A NP L + RP + R T +++++ Sbjct: 63 ASSAARKLSALRQFFAFLLDEGERADNPALDIARPATRRPLPRILTHDEIRRLFEQAVAE 122 Query: 190 S----------QPRLAFEFLLYSGLRCSDSCR-AGVQHLQNNIFSIKTQKTGTIITVELP 238 + + L E L SGLR ++ L+ + I K V L Sbjct: 123 AEGEAPPAGAVRMLLLLELLYGSGLRATELVSLPRRAVLREREYLIVRGKGDKERLVPLS 182 Query: 239 DGFMKLLAMTPI---GKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKF 292 + + K ++ + + A +AGV+ S H +R Sbjct: 183 ARARAAFDRWLPLLADGSPWLFPSGKAHISRVRLFQMLRDLAARAGVDPAAVSPHVLRHA 242 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 AT + GA L G + E YT R R+ +V+ P Sbjct: 243 FATHLLEGGADLRALQLMLGHADIATTEIYTHVDSR---------RLVELVNRRHP 289 >gi|146277269|ref|YP_001167428.1| site-specific tyrosine recombinase XerC [Rhodobacter sphaeroides ATCC 17025] gi|145555510|gb|ABP70123.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025] Length = 306 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 38/288 (13%), Positives = 80/288 (27%), Gaps = 28/288 (9%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFD--------QIIRKSGDFDYRKITTKHIRSG 122 + + + + ++ ++ + + G + +R+ Sbjct: 10 RDALEAWLTHQRVIEGASPHTIRAYAADVAGWLAFLAGHLGEGYGLPALASVPHADLRAW 69 Query: 123 VESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + + S + L+++R W +E V LS PK + + RP ++ D Sbjct: 70 MAHERARGLGARSLARSLSAVRQFTGWLAEREGVDATAVLSARGPKFRRKLPRPLSEGDA 129 Query: 180 QQFKSF-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 + ++ L GLR S++ K Sbjct: 130 KALLLTVAEDGAEDWIRARDLAVVTLLYGCGLRISEALGLPATAHPLPEVLRILGKGSKE 189 Query: 233 ITVELPDGFMKL------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--K 284 V + L + F +N + + G+ Sbjct: 190 RLVPAIPAAREAVARYAALCPFDLTSGPLFRGARGGALNPRLVAKVMERARATLGLPPTA 249 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 + H +R AT +AG + G ++ + YT D RL Sbjct: 250 TPHALRHSFATHLLNAGGDLRAIQELLGHASLSTTQVYT-AVDGARLM 296 >gi|317508798|ref|ZP_07966443.1| tyrosine recombinase XerD [Segniliparus rugosus ATCC BAA-974] gi|316252907|gb|EFV12332.1| tyrosine recombinase XerD [Segniliparus rugosus ATCC BAA-974] Length = 340 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 50/323 (15%), Positives = 97/323 (30%), Gaps = 51/323 (15%) Query: 51 LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF 109 + G+ + P L + Y + ++ S+ D+ + + Sbjct: 1 MAGAADRVRTAEGPLTSDK-LSEQVKSYLDHLTVERGASKHTVSSYRRDLDRYMDFLRER 59 Query: 110 ---DYRKITTKHIRSGVES------RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 D ++T+ I + SSA + L+++R L K+AV + A + Sbjct: 60 SATDLAQVTSAQIAEFLAWSRDPEGMGLAQSSAARGLSAVRGLHKFAVLEGMAAQDAAHG 119 Query: 161 VERPKRKTEGIRPWTKED---------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCR 211 V+ P+ + + M +S + E + +G R S++ Sbjct: 120 VKPPQPGRRLPKALPVDQVIAIIEASGMADSESDIPRALRDAALLELMYCTGCRVSEAVG 179 Query: 212 AGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKETF--------------- 255 + + S + K V L + L + Sbjct: 180 LNLLDVDFQARSARVLGKGDKERLVPLGGPAVAALDAYLVRGRPALLAARIPRGSASRSY 239 Query: 256 -------------FINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADA 300 F+N ++ + + A KAGV S H +R AT + Sbjct: 240 SREAPPGKATNALFLNARGERFSRQSTWASLRHAAAKAGVKAEISPHTLRHSCATHLLEG 299 Query: 301 GATAHELMATYGWKTVDQAETYT 323 GA + G +V + YT Sbjct: 300 GADVRVVQELLGHASVVTTQIYT 322 >gi|228910970|ref|ZP_04074778.1| Site-specific recombinase, phage integrase [Bacillus thuringiensis IBL 200] gi|228848625|gb|EEM93471.1| Site-specific recombinase, phage integrase [Bacillus thuringiensis IBL 200] Length = 322 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 41/269 (15%), Positives = 82/269 (30%), Gaps = 22/269 (8%) Query: 83 HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTS 139 + + F +R+ IT KH++ + P++ +++ Sbjct: 38 QAEGFRKRTIDDYTKLFRYFMRELNIDKVEIITAKHVQMYINKLISRELAPATVNIRISA 97 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPRLA 195 ++ +FK Q Y+ NP + + + I +++ G + A Sbjct: 98 LKSVFKRLHEQGYIKSNPAVDFVKLRTDEAPIFTLNNNQIKRLFCVVDKTTYAGYRDYCA 157 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPDGFMKLLAMTPIG 251 +L+ GLR ++ + L + +I K V + + L M Sbjct: 158 MLLMLHCGLRVNEVNQLEANDLDFDNLTIMLSGAKNKNRKTRAVPMTKKVAEELRMLIEE 217 Query: 252 KETFFINNDKQKMNATQ-------FSIWFKAKATKAGVNK----SAHGVRKFSATISADA 300 +F + AG++K S H +R AT Sbjct: 218 SREYFEVTTNVFLTHDGNSIDNDLLRKRMYRYGQFAGLSKECRPSPHSLRHTFATNFLRN 277 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329 G + + LM G + Y + D Sbjct: 278 GGSVNALMRIMGHADITTTMRYVRLNDEA 306 >gi|119385844|ref|YP_916899.1| phage integrase family protein [Paracoccus denitrificans PD1222] gi|119376439|gb|ABL71203.1| phage integrase family protein [Paracoccus denitrificans PD1222] Length = 393 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 48/327 (14%), Positives = 95/327 (29%), Gaps = 16/327 (4%) Query: 14 ERTRHGKIIY--YFRKGHG-RRIRLPYPHESTFIPAYMSALT-----GSTPKREYINSPR 65 G+ +Y +R G RR+ + T A A+ R Sbjct: 32 RVYPSGRKMYLAQYRAGGRSRRVNIGLHGAMTPEMARTEAMKYLSDVRLGADPAGERDRR 91 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSGVE 124 K T+K + ++ +E D I + G IT + + Sbjct: 92 KASPTIKEFSKRFLSDHVALHCKASTYGEYERSIDLFINPRFGSHRIIDITRADVVGLHQ 151 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----Q 180 S +H P A + L + V+F A + + + E + D Sbjct: 152 SMRHIPYQANRTLGVLSVMFTVAHAWGVRTDGVNPCWKVKRYREEKRERYLTPDELARLG 211 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELP 238 + +E + LL +G R S+ +++ ++ + + Sbjct: 212 KVLDCATEEPEAANCIRLLLLTGCRLSEIQTLKWRYVDYRNGLLRLPDSKTGAKLVPIGK 271 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATIS 297 L + I + I + + T ++ +AG++ H +R A+ + Sbjct: 272 AAIKVLKTIPKIDGNPYVITGRMEGQHLTDMQKPWRRLRKRAGLDDLRIHDLRHSFASDA 331 Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324 G + G V Y Sbjct: 332 LQLGQDLTMIGRLLGHTQVQTTARYAH 358 >gi|296394365|ref|YP_003659249.1| integrase family protein [Segniliparus rotundus DSM 44985] gi|296181512|gb|ADG98418.1| integrase family protein [Segniliparus rotundus DSM 44985] Length = 304 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 37/300 (12%), Positives = 90/300 (30%), Gaps = 34/300 (11%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQII----------RKSGDFDYRKITTKHIR 120 +++Y + + + N+ ++ + +T +R Sbjct: 2 AEALAQYERHLRFERGRSPNTVRAYLGDLRAYFGPAVDGNDQDDTAAHEVLGAVTIADLR 61 Query: 121 SGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 + + ++ + + M+ F+WA+R +P + PK + ++ Sbjct: 62 GWLSEMTAEGASRATLARRASGMKTFFEWAMRNGLAEHDPTARLSTPKLRRTLPHVLRQD 121 Query: 178 D------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----------- 220 + + +L E L +G+R + C + + + Sbjct: 122 QAEQALGPAPHQREGPLALRDQLILELLYGTGMRVGELCGLDLDDIDQDRRLATVLGKGD 181 Query: 221 -IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279 ++ L G K+ T + + A + Sbjct: 182 KQRAVPFGAKAADALAAWLRDGRPALVGPRSGAALLLGARGKRLDPRTARRVVQERVAEE 241 Query: 280 AGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSR 337 AG+ HG+R +AT + GA + G ++ + YT +R+R + + Sbjct: 242 AGLPSLGPHGLRHSAATHLLEGGADLRVVQEILGHSSLATTQIYTHVSVERLRKVHEQAH 301 >gi|134297261|ref|YP_001120996.1| site-specific tyrosine recombinase XerC [Burkholderia vietnamiensis G4] gi|134140418|gb|ABO56161.1| tyrosine recombinase XerC [Burkholderia vietnamiensis G4] Length = 306 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 45/292 (15%), Positives = 88/292 (30%), Gaps = 31/292 (10%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESR 126 L I+ Y + L+ ++ + D++ + + +T +R + + Sbjct: 2 LDDPIAAYLSNLKHVRQLSEHTLRGYTHELDELKKLAAGRPLETLTATDVRGAVARAHAG 61 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQF 182 + S L++ R ++W + + NP +V PKR + + +D M Sbjct: 62 GLSARSISHRLSAWRAFYRWLALRIEMPANPVAAVRAPKRPKTLPKALSVDDASALMDAP 121 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------G 230 +EG + E SGLR ++ + Q + + Sbjct: 122 LPDTTEGIRDHAILELFYSSGLRLAELVGLDAMYTQADGYRSAGWLDLAEAEVTVRGKGN 181 Query: 231 TIITVELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 V + + L F++ +M K A AG+ Sbjct: 182 KERKVPVGRKAIAALNAWLAVRGEFVKHDPHPLFLSVRGNRMAPGVVRERVKRAALSAGI 241 Query: 283 N--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R AT + + G +V + YT D L Sbjct: 242 PANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQIYT-SLDFQHLA 292 >gi|325143762|gb|EGC66079.1| tyrosine recombinase XerC [Neisseria meningitidis M01-240013] Length = 305 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 40/293 (13%), Positives = 85/293 (29%), Gaps = 30/293 (10%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD----------YRKITTKHIR 120 Y ++ + ++ ++ +++ + Sbjct: 6 FAAHFDAYLENIVREGKSEHTVAAYRRDLEELFALLAQMPSEAEGGVPQGLSQRDFTAAL 65 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + R + + L+S R W V + + +P ++ PK+ + +E + Sbjct: 66 RRLSQRGLNARTLARKLSSWRQYCVWLVERGLMRADPTADIKPPKQPERVPKALPQEWLN 125 Query: 181 QFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIIT 234 + +G + FE + SGLR S+ + + + T K Sbjct: 126 RMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQ 185 Query: 235 VELPDGFMKLLAMTPIGKETFFIN---NDKQKMNATQFSIWFKAKATKA-----GVNKSA 286 V L ++ L ++T + K A A G + S Sbjct: 186 VPLTGKSVEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHVSP 245 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 H +R A A + G ++ + YTK L + R+ Sbjct: 246 HMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK------LDFDHIARL 292 >gi|294776304|ref|ZP_06741787.1| integron integrase [Bacteroides vulgatus PC510] gi|294449844|gb|EFG18361.1| integron integrase [Bacteroides vulgatus PC510] Length = 366 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 30/269 (11%), Positives = 77/269 (28%), Gaps = 15/269 (5%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPS 131 Y + + ++ ++ +YF + + ++ I + +K + S Sbjct: 92 EGYLELLEQKRYSPSTIKTYRAYFSDFMEYHKGRNIDRLKVADINKYILYLVNEKKISVS 151 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 + +++ + + + + R K ++ ++ + + Sbjct: 152 QQNMRINAIKF---YYEQVKGGKRQYYGGITRAKEYKSLPEVLSRNEVCRIL-SCLSNRK 207 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF-----MKLLA 246 R + +GLR S+ + + + + G L + Sbjct: 208 HRCMISLIYSAGLRRSELLNLTPKDIISERMLVCIMGKGRKCRYSLLSEKLLKELREYFK 267 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAH--GVRKFSATISADAGATA 304 K F + +A+ K A++AG+ H +R AT + G Sbjct: 268 EYRPQKWLFEGETPGEPYSASALVKVLKEAASRAGIKHRVHVHMLRHSFATHLLEQGTDL 327 Query: 305 HELMATYGWKTVDQAETYTKGADRIRLGI 333 + G + Y + I Sbjct: 328 RTIQELLGHNDIKTTSIYLHVTSTHKSSI 356 >gi|167037592|ref|YP_001665170.1| site-specific tyrosine recombinase XerC [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256750822|ref|ZP_05491707.1| integrase family protein [Thermoanaerobacter ethanolicus CCSD1] gi|320116007|ref|YP_004186166.1| integrase family protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856426|gb|ABY94834.1| phage integrase family protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256750405|gb|EEU63424.1| integrase family protein [Thermoanaerobacter ethanolicus CCSD1] gi|319929098|gb|ADV79783.1| integrase family protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 330 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 44/303 (14%), Positives = 99/303 (32%), Gaps = 43/303 (14%) Query: 74 LISEYRKS-AHWGSLAVNSRISFESYFDQIIRK-------------SGDFDYRKITTKHI 119 L+ E+ + + + N+ ++ +R + D + I Sbjct: 20 LLEEFLNYFSTVKARSYNTVKAYAYDLVLFLRFLKQRRGKVSPDVEFDEIDISDVDVDLI 79 Query: 120 RSGV------------ESRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKR 166 S R +TP + + + S+R + + ++ + ++ NP +E PK Sbjct: 80 ESVDLNDLYAYLNFVANERSNTPHARARKVASLRSFYNYLYKKAKVLSKNPTQELESPKL 139 Query: 167 KTEGIRPWTKEDMQQFKSFW--SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 T ++ ++ + + L GLR S+ + ++++ + Sbjct: 140 SVRQPIYLTLDESKKLLNSIDGPFKERDYAIITLFLNCGLRVSELVNINLDDIKDDKLT- 198 Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAK 276 K TV L D + + + + + K ++++ K Sbjct: 199 VIGKGNKQRTVYLNDACINAINTYLKVRPKEGVKDKKALFLSKRLKRISVKTVQYTVKKH 258 Query: 277 ATKAGV---NKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD-RIRL 331 A + SAH +R +AT+ G L G V + YT D +++ Sbjct: 259 LKNANLEGKKYSAHKLRHTAATLMYRYGNVDIRTLQKLLGHSNVSTTQIYTHVDDSQLKE 318 Query: 332 GIK 334 + Sbjct: 319 AVN 321 >gi|150026173|ref|YP_001296999.1| integrase/recombinase [Flavobacterium psychrophilum JIP02/86] gi|149772714|emb|CAL44197.1| Integrase/recombinase [Flavobacterium psychrophilum JIP02/86] Length = 347 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 37/269 (13%), Positives = 80/269 (29%), Gaps = 17/269 (6%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----K 127 + I ++ K + ++ ++ + +IT + + K Sbjct: 72 REQIQKFSKWLFSKRYSPSTIKTYTEALQSFLLFFDQKPITEITNQDVIVYNNEYILKNK 131 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + S Q + ++++ FK + RPKR +KE+++ Sbjct: 132 LSASYQNQIVNAIKLYFKTIKE----VKIEVDKIHRPKRSKLLPNVLSKEEIKLILEAH- 186 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLL 245 + + + GLR S+ + + I+ K L + +L Sbjct: 187 SNIKHKTMLSLIYSCGLRRSELLHLKPTDIDSKRGIVIIRQSKGKKDRIAPLSPKILVML 246 Query: 246 AMTPIGKETFFINNDKQK----MNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISAD 299 + + Q + K KA + S H +R AT + Sbjct: 247 REYYSNYKPKSWLFEGQIPGETYSEKSLQNVLKQALEKAKIAKPVSLHWLRHSYATHLLE 306 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADR 328 +G + G + E YT + + Sbjct: 307 SGTDLRYIQELLGHSSTKTTEIYTHVSTK 335 >gi|84514470|ref|ZP_01001834.1| tyrosine recombinase [Loktanella vestfoldensis SKA53] gi|84511521|gb|EAQ07974.1| tyrosine recombinase [Loktanella vestfoldensis SKA53] Length = 306 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 40/291 (13%), Positives = 85/291 (29%), Gaps = 29/291 (9%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRS 121 L + + +A N+ +++ + + G ++T +R+ Sbjct: 8 LTATLDHWLDHERALAGVAENTIVAYRADVLGFMAFLTQHNGDTQGLGPLARVTLSDMRA 67 Query: 122 GVESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + +A + L++++ ++W +E LS PK + + RP + Sbjct: 68 WMAHERGRGVAARSLARSLSAVKSFYRWLAAREGFEPTAVLSTRAPKFQPKLPRPLSAPA 127 Query: 179 MQQFK-------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 ++ L GLR S++ + T K G Sbjct: 128 ASDMIDQIGLQACDPWVAARDTAVVTLLYGCGLRISEALSLQGRDAPLPPVLRITGKGGK 187 Query: 232 IITVELPDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKAGVNK 284 V + D +A F + + + G+ Sbjct: 188 QRIVPVLDIARDAVAGYLRLCPYEQAADAPLFRAIRGGPLAPRAIQKVVEQTRLQLGLPG 247 Query: 285 S--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 + H +R AT AG + G ++ + YT D +L Sbjct: 248 TATPHALRHSFATHLMAAGGDLRCIQELLGHASLSTTQAYT-AVDAAQLMA 297 >gi|75674624|ref|YP_317045.1| site-specific tyrosine recombinase XerC [Nitrobacter winogradskyi Nb-255] gi|123773314|sp|Q3SVJ8|XERC_NITWN RecName: Full=Tyrosine recombinase xerC gi|74419494|gb|ABA03693.1| tyrosine recombinase XerC subunit [Nitrobacter winogradskyi Nb-255] Length = 321 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 43/310 (13%), Positives = 91/310 (29%), Gaps = 34/310 (10%) Query: 55 TPKREYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRK 113 + E + P + + I + L+ + ++ Q + G + Sbjct: 2 AKRAEPLPDPACAASDIGQQIVRWLTHLRAERRLSPKTLEAYARDVRQCLMFLGQHWSEQ 61 Query: 114 IT--------TKHIRSGVESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162 +T IRS + +R+ S ++ L +R ++ R+ + ++ Sbjct: 62 VTLEGFVALEPADIRSFMAARRADDIGGRSLMRSLAGLRSFARFLEREGLGKVGALGAIR 121 Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL---------LYSGLRCSDSCRAG 213 PK +P ++F + R + + SGLR S++ Sbjct: 122 APKVGKSVPKPIHMSAAKRFADASERAGEDREPWIWARDAAVMALLYGSGLRISEALGLK 181 Query: 214 VQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ----------K 263 + + TG + +LA+ + + Sbjct: 182 RRDVPPPGAGDVLVVTGKGNKTRMVPVLQNVLALIHEYVAMCPHSLPPEGPIFVGARGGP 241 Query: 264 MNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321 + A + G+ + H +R AT G + G ++ + Sbjct: 242 LRARIIQLVMARMRGALGLPDSATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQI 301 Query: 322 YTKGADRIRL 331 YT G D RL Sbjct: 302 YT-GIDSERL 310 >gi|312135197|ref|YP_004002535.1| integrase family protein [Caldicellulosiruptor owensensis OL] gi|311775248|gb|ADQ04735.1| integrase family protein [Caldicellulosiruptor owensensis OL] Length = 328 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 43/287 (14%), Positives = 93/287 (32%), Gaps = 45/287 (15%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDF-------------------------DYRKITTKHI 119 + + N+ + +R + +T ++ Sbjct: 21 KNKSPNTIKEYYYDLRNFLRYLKAKELNMLSQIEKIEDLENIDVSSFEIEKLKTLTLSNL 80 Query: 120 RSGVESRKHT----PSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPW 174 P + + + S+R FK+ + + + NP +E PK R Sbjct: 81 YEYFSFLATRFNNGPYARARKVASIRSFFKYLYSKAKLIPDNPAKDLESPKLGKRNPRYL 140 Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 T E+ ++ S ++ R L+ GLR S+ + +++++ I + Sbjct: 141 TLEESKKLLSAIDGENKERDFAMITLFLNCGLRLSELVNINLSDIKDDMLRIVGKGN-KE 199 Query: 233 ITVELPDGFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGV-- 282 + L + + + T F++ K++++ + AG+ Sbjct: 200 RIIYLNKACKEAIENYLKVRPTEGVKDKDALFLSERKKRISRRTVQYIVEKYVKMAGINQ 259 Query: 283 -NKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD 327 SAH +R +AT+ G L G +++ E YT D Sbjct: 260 KKISAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVND 306 >gi|104784270|ref|YP_610768.1| site-specific tyrosine recombinase XerC [Pseudomonas entomophila L48] gi|123380751|sp|Q1I301|XERC_PSEE4 RecName: Full=Tyrosine recombinase xerC gi|95113257|emb|CAK17985.1| site-specific tyrosine recombinase, integrase family [Pseudomonas entomophila L48] Length = 299 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 34/279 (12%), Positives = 84/279 (30%), Gaps = 21/279 (7%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR------SGVESRK 127 + Y ++ ++ +++ +++I + ++ + Sbjct: 5 LEAYCAHLRNERQVSGHTLLAYRRDLEKVIEFCNNQGIAGWDALQVQQLRQLVARQHHHG 64 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS--- 184 + S + L+++R L+++ R+ +P + PK + + + Q Sbjct: 65 QSSRSLARLLSAVRGLYRYLNREGLCQHDPANGLAPPKGERRLPKTLDTDRALQLLDGGV 124 Query: 185 -FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFM 242 + + E SGLR S+ ++HL K G + + Sbjct: 125 DDDFIARRDQAILELFYSSGLRLSELAGLDLEHLDLTGGLVQVLGKGGKSRVLPVGRKAC 184 Query: 243 KLLAMTP-------IGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSA 294 + L FI +++ + K + G + H +R A Sbjct: 185 EALQEWFRLRGIAAPRDGAVFITRQGNRLSTRAIQMRVKTFGERELGQHLHPHMLRHSFA 244 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 + ++ + G + + YT D L Sbjct: 245 SHLLESSQDLRAVQEMLGHADISTTQIYTH-LDFQHLAA 282 >gi|330432804|gb|AEC17863.1| site-specific tyrosine recombinase XerC [Gallibacterium anatis UMN179] Length = 296 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 44/274 (16%), Positives = 92/274 (33%), Gaps = 20/274 (7%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126 L+ + +Y L+ + S++ + G D+R++ IR + Sbjct: 2 LQDWLKKYWDYLRIERQLSAKTLQSYQQQIVACVELLTNEGITDWRQVDGSVIRFILTQG 61 Query: 127 KHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 K + S L+S+R F++ +R + + +NP + PK + E + Q Sbjct: 62 KKSGLHEHSLALRLSSLRGFFQFLLRNQQIKVNPTDGISAPKAGKRLPKSIDAESISQLL 121 Query: 184 SFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPD 239 S+ + + E + SGLR S+ ++ + K + Sbjct: 122 DIKSKDPLSLRDKAIMELMYSSGLRLSELRGLNLEDINFKARELKVLGKGNKERILPFGR 181 Query: 240 GFMKLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290 L FI++ ++ ++ + K G+N H +R Sbjct: 182 YAAGALHQWLEVRLQFNPQDNALFISHLGHRLTSSAIQQRLEQWGIKQGLNAHLNPHKLR 241 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324 AT +A + + G + + + YT Sbjct: 242 HSFATHMLEASSDLRAVQELLGHENLSTTQIYTH 275 >gi|262376584|ref|ZP_06069812.1| tyrosine recombinase XerC [Acinetobacter lwoffii SH145] gi|262308294|gb|EEY89429.1| tyrosine recombinase XerC [Acinetobacter lwoffii SH145] Length = 305 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 42/286 (14%), Positives = 91/286 (31%), Gaps = 28/286 (9%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESR----K 127 L++ + K + + ++ ++ + + + +R + + + Sbjct: 6 LLNMWLKEREIQNQSKHTLQAYARDVSDFLEFCQREQLNLNDVEATDLRQFLAEKVEQHQ 65 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ------ 181 +PSS + L+S+R KWA + +++A NP + ++ E + Q Sbjct: 66 LSPSSLQRMLSSIRQFMKWAEQAQHLAFNPADDFQLKRQSRPLPGMVDIETVNQIIDQPA 125 Query: 182 --FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELP 238 + + + E L SGLR ++ ++ + N ++ V Sbjct: 126 PENEIQQQMWLRDKAILELLYSSGLRLAELQNLRIKDIDFNRQLLRITGKGNKTRIVPFG 185 Query: 239 DGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 + + FI + A Q K +A +AGV + Sbjct: 186 SKAKASVMAWLQVYPLWNGDFVPEANVFITQKGNPLGARQIENRVKFQAQRAGVNVDLHP 245 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R A+ + G + + YT D L Sbjct: 246 HLLRHCFASHMLSNSRDLRAVQEMLGHSNLSTTQIYTH-VDFDHLA 290 >gi|1877429|gb|AAC48867.1| integrase [Streptococcus pyogenes phage T12] Length = 362 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 49/345 (14%), Positives = 102/345 (29%), Gaps = 33/345 (9%) Query: 11 VTKERTRHGKIIY----YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 + + +G+ Y Y +G+R + T +A + ++ P+ Sbjct: 3 IKSYKKENGETAYKFVLYAGYVNGKRKYIRREGFKT----KQAARETLISLQAELDKPKS 58 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 T L ++ K + + I+ K I I+ E Sbjct: 59 -SMTFGALTDQWLKEYEKTVQGSTYLKTERNINKHILPKLDKVKIGDINPLLIQRLTEEW 117 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-----IRPWTKEDMQQ 181 + + L +R + AVR Y+ NP L + PK K + + Sbjct: 118 CNDLKYGGKILGLVRNILNLAVRYGYINNNPALPITPPKIKRKRKMNNNFYTLDQLKQFL 177 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--------------FSIKTQ 227 ++ + F L ++G+R + L N T+ Sbjct: 178 ELVEKTDNIEKIALFRLLAFTGIRKGELLALTWDDLNGNTLSINKAVTRTQVGLEIDVTK 237 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ---KMNATQFSIWFKAKATKAGVNK 284 + + L D +++L T + + M + W + + Sbjct: 238 TKSSDRLISLDDETLEILQELHETFPTSTLMFQSKSGGIMTPSLPRKWLLQIIKGIDLPQ 297 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGAD 327 + HG R A++ ++G + ++ G + YT Sbjct: 298 ITIHGFRHTHASLLFESGLSLKQVQHRLGHGDLQTTMNVYTHITQ 342 >gi|312127552|ref|YP_003992426.1| integrase family protein [Caldicellulosiruptor hydrothermalis 108] gi|311777571|gb|ADQ07057.1| integrase family protein [Caldicellulosiruptor hydrothermalis 108] Length = 328 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 42/287 (14%), Positives = 91/287 (31%), Gaps = 45/287 (15%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDY-------------------------RKITTKHI 119 + + N+ + +R D + +T ++ Sbjct: 21 KNKSPNTIKEYYYDLRTFLRYLKAKDLNMLSQIEKIEDLENIDVSNFEIEKLKALTLSNL 80 Query: 120 RSGVESRKHT----PSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPW 174 P + + + S+R FK+ + + + NP +E PK R Sbjct: 81 YEYFSFLATRFNNGPYARARKVASIRSFFKYLYSKAKLIPDNPAKDLESPKLGKRNPRYL 140 Query: 175 TKEDMQQFKSFWS--EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 T ++ ++ S + L GLR S+ + +++++ I + Sbjct: 141 TLDESKKLLSAIDGENKERDFAIITLFLNCGLRLSELVNINLSDIKDDMLRIVGKGN-KE 199 Query: 233 ITVELPDGFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGV-- 282 + L + + + T F++ K++++ + AG+ Sbjct: 200 RIIYLNKACKEAIENYLKVRPTEGVKDKDALFLSERKKRISRRTVQYIVEKYVKMAGINQ 259 Query: 283 -NKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD 327 SAH +R +AT+ G L G +++ E YT D Sbjct: 260 KKISAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVND 306 >gi|291536947|emb|CBL10059.1| Site-specific recombinase XerD [Roseburia intestinalis M50/1] Length = 416 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 51/357 (14%), Positives = 108/357 (30%), Gaps = 32/357 (8%) Query: 17 RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76 + GK F + + I+ + F + + T + L Sbjct: 8 KTGKWFAKFYYTNWQGIK-KQKWKRGFATKKEAL---GFERDFLEQQSANPDMTFQNLYE 63 Query: 77 EYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTP----- 130 Y + L ++ ++ ++ I+ G +I +R +P Sbjct: 64 IYMEDMAAR-LKQSTLLTKKAVLQTHILPFFGSKPINEIKASDVRRWQAKLMSSPNNYSQ 122 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDMQQFKSFWSEG 189 + + T + + +A R + NPC + E + WT + F+ + Sbjct: 123 TYLKKINTELNSIINYAKRFYDLNTNPCGKAGTIGKAKAEEMDYWTYNEYIVFREGVKDK 182 Query: 190 SQPRLAFEFLLYSGLRCSD----------------SCRAGVQHLQNNIFSIKTQKTGTII 233 + FE L ++G+R + S Q + + + Sbjct: 183 PLSYICFEVLYWTGMREGELLALSPADIDIDNKLISINRTYQRIGGKDVFTSPKTRKSKR 242 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKF 292 T+ +PD + L+ + + + + S G K H +R Sbjct: 243 TIPIPDFLCQELSDYIQSRYMLDADERLFPVTKSYLSHEMIRGCKITGAKKIRIHDIRHS 302 Query: 293 SATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVDSDDP 348 A++ + G A L G + V TY+ + + + S+ +D P Sbjct: 303 HASLLINQGCDALMLADKLGHEKVSTTLNTYSHLFPHKQ--QELVHSLESLQATDSP 357 >gi|283781943|ref|YP_003372698.1| integrase family protein [Pirellula staleyi DSM 6068] gi|283440396|gb|ADB18838.1| integrase family protein [Pirellula staleyi DSM 6068] Length = 314 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 45/278 (16%), Positives = 90/278 (32%), Gaps = 26/278 (9%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSA 133 EY ++ LA NS +++ + R GD K+T + + + + P S Sbjct: 29 EYLRTE--CHLAKNSVAAYQRDMTRFCRWLGDRFIPKLTVRDLTDYLAFMREENLDPKSI 86 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--- 190 + + ++++ ++ + + NP + K + + Sbjct: 87 ARHVVTLKLFLRYLQLEGIIKDNPAELLGTTKTAATIPDVLSPTVAARLLDAPQPYDPLF 146 Query: 191 -QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKLLAMT 248 + R E L +G R S+ V+ L+ K V L D + + Sbjct: 147 RRDRALLELLYATGCRASEVSVMEVRDLRIEDRFCLARGKGSKERLVPLGDPALAAVEAY 206 Query: 249 PIG-------------KETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFS 293 +++ Q++ + K A + G S H +R Sbjct: 207 LEHERPKLAAKSKQGVPPWLLLSSRGQRLTRQKIWELVKQYALRCGAPASMSPHTLRHSF 266 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 AT GA ++ G ++ + YT D+ RL Sbjct: 267 ATHLLSGGADLRQVQELLGHASIGTTQIYTH-VDQSRL 303 >gi|163814364|ref|ZP_02205753.1| hypothetical protein COPEUT_00515 [Coprococcus eutactus ATCC 27759] gi|158449999|gb|EDP26994.1| hypothetical protein COPEUT_00515 [Coprococcus eutactus ATCC 27759] Length = 323 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 36/263 (13%), Positives = 83/263 (31%), Gaps = 14/263 (5%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS- 131 + + + H + + + ++++ + KITT+ +R + + T + Sbjct: 47 DFLDMFLTAKHLEGCSDKTIRYYRCNIEKMLDTI-NIPVIKITTEMLRKYLVEYQTTNNC 105 Query: 132 ---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + S+ F W ++Y+ +P + + K E ++ Sbjct: 106 GKVTIDNIRRSLSTFFSWLEEEDYIIKSPMKRIHKVKTAVIVKDTIPDEKIEI-LRDNCN 164 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAM 247 + R +FLL +G+R + R + + + L Sbjct: 165 NLRDRAMIDFLLSTGIRVGELVRLNIDDIDFSERECVVYGKGDKERKAYFDAKTKIHLLN 224 Query: 248 TPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300 + I N ++ + + + K GV K H R+ AT + + Sbjct: 225 YIESRTDNNIALFVSLNKPHSRLTESGVELRLREMGKKLGVEKVHPHKFRRTMATRAIEK 284 Query: 301 GATAHELMATYGWKTVDQAETYT 323 G ++ G + +D Y Sbjct: 285 GMPIEQVQKILGHEQIDTTLRYA 307 >gi|300933911|ref|ZP_07149167.1| integrase/recombinase [Corynebacterium resistens DSM 45100] Length = 325 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 42/316 (13%), Positives = 92/316 (29%), Gaps = 34/316 (10%) Query: 65 RKKPTTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIR 120 P +L + EY + + + N+ ++ + G + T + + Sbjct: 2 TSTPPSLSRALEEYEEHLQFVVGRSENTITAYRKDLKAALE--GLDSVDEFTLEHARDVL 59 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED-- 178 H+ SS + ++S++ + + +V NP ++ PK R E Sbjct: 60 GWALDAGHSRSSMARMVSSLKGFGSFLAHKGWVEANPVAALRAPKLDRSLPRVLRTEQAT 119 Query: 179 --------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT- 229 + + ++ E L +G+R ++ + + ++ Sbjct: 120 AVLDRARDHARINNEDPLATRDWAMAELLFATGMRVAELTGTDIDDVDFTHNVVRVVGKG 179 Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQ------------KMNATQFSIWFKAKA 277 V + ++ + Q ++N Q Sbjct: 180 NKQRVVPFGPTARTAVEAWISRRKEVLNPANGQGVAALFLGARGGRINQRQVRSVINELT 239 Query: 278 TKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI--K 334 AG + S HG R +AT + GA + G ++ + YT + + Sbjct: 240 DAAGAPRMSPHGFRHSAATAILEGGADLRVVQEMLGHASMQTTQIYTHVGTERLKAVFNQ 299 Query: 335 NSRRISSVV--DSDDP 348 R S P Sbjct: 300 AHPRAESPAQQPIRRP 315 >gi|330812552|ref|YP_004357014.1| Site-specific tyrosine recombinase XerC/Sss [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|34222931|sp|Q8VS06|XERC_PSEFL RecName: Full=Tyrosine recombinase xerC gi|1929097|emb|CAA72946.1| Sss/XerC protein [Pseudomonas fluorescens] gi|27652537|gb|AAO17715.1| site-specific recombinase [Pseudomonas fluorescens] gi|327380660|gb|AEA72010.1| Site-specific tyrosine recombinase XerC/Sss [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 299 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 35/278 (12%), Positives = 89/278 (32%), Gaps = 21/278 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRK-----SGDFDYRKITT-KHIRSGVESRK 127 + Y + ++ ++ ++ ++++ G + I + + + + + Sbjct: 5 LDAYCEHLRSERQVSPHTLSAYRRDLEKVLGWCQKQNIGSWAALDIQRLRSLIARLHQQG 64 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + S + L+++R L+ + R+ +P + PK + + + Q Sbjct: 65 QSSRSLARLLSAVRGLYHYLNREGLCDHDPATGLAPPKGERRLPKTLDTDRALQLLEGAV 124 Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFM 242 E + + E SGLR S+ + L + K + + Sbjct: 125 EDDFLARRDQAILELFYSSGLRLSELTGLNLDQLDLADGMVQVLGKGSKTRLLPVGRKAR 184 Query: 243 KLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSA 294 + L + F++ +++ + KA + G N H +R A Sbjct: 185 EALEQWLPLRALTNPADDAVFVSQQGRRLGPRAIQLRVKAAGERELGQNLHPHMLRHSFA 244 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 + ++ + G + + YT D L Sbjct: 245 SHLLESSQDLRAVQELLGHSDIKTTQIYTH-LDFQHLA 281 >gi|253581963|ref|ZP_04859187.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725] gi|251836312|gb|EES64849.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725] Length = 339 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 51/335 (15%), Positives = 115/335 (34%), Gaps = 19/335 (5%) Query: 12 TKERTRHGKIIYY------FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65 + T + + + F GR+IR + AL + + Sbjct: 10 VYKVTGNRRKPWRAIKTIGFDICKGRQIRKTVGY----FETRKEALESLITFKFDPYNIE 65 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 + T+ + + + K H+ L+ S+ ++ES + D ++ T H++ + + Sbjct: 66 VENLTIDDIYNRW-KEMHFKKLSKLSQSNYESNYTHFKP-LKDRKIAELKTIHLQEFMNN 123 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + + SS + LFK+A++ + + + +E K + R ++ Sbjct: 124 LELSESSKRNIKRMLNQLFKYALKYDIIEKDYTQFIELGKVEKILERKIFTDEEISKLWK 183 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 + E + ++Y+G+R + Q + +I+ L MK+L Sbjct: 184 YKE-LEWVDTILIMIYTGMRVGELLTIKNQDIDLENRTIRGGIKTDAGKNRLIPINMKIL 242 Query: 246 AMTPIGKETFFINNDKQKM----NATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAG 301 + + + + +FK K + + H R A++ ++A Sbjct: 243 PFIKTRMTPSNEYLILSRKEKNLSYSSYITYFKKLMKKLDMEHTIHDCRHTFASLLSNAD 302 Query: 302 ATAHELMATYGWKTVDQAE-TYTKG-ADRIRLGIK 334 A + G D E YT + ++ I Sbjct: 303 ANKVSIAKIIGHSNYDMTEKIYTHKDIEELKKAID 337 >gi|167040254|ref|YP_001663239.1| site-specific tyrosine recombinase XerC [Thermoanaerobacter sp. X514] gi|300914338|ref|ZP_07131654.1| integrase family protein [Thermoanaerobacter sp. X561] gi|307724426|ref|YP_003904177.1| integrase family protein [Thermoanaerobacter sp. X513] gi|166854494|gb|ABY92903.1| phage integrase family protein [Thermoanaerobacter sp. X514] gi|300889273|gb|EFK84419.1| integrase family protein [Thermoanaerobacter sp. X561] gi|307581487|gb|ADN54886.1| integrase family protein [Thermoanaerobacter sp. X513] Length = 330 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 44/303 (14%), Positives = 99/303 (32%), Gaps = 43/303 (14%) Query: 74 LISEYRKS-AHWGSLAVNSRISFESYFDQIIRK-------------SGDFDYRKITTKHI 119 L+ E+ + + + N+ ++ +R + D + I Sbjct: 20 LLEEFLNYFSTVKARSYNTVKAYAYDLVLFLRFLKQRRRKVSPDVEFDEIDISDVDVDLI 79 Query: 120 RSGV------------ESRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKR 166 S R +TP + + + S+R + + ++ + ++ NP +E PK Sbjct: 80 ESVDLNDLYAYLNFVANERSNTPHARARKVASLRSFYNYLYKKAKVLSKNPTQELESPKL 139 Query: 167 KTEGIRPWTKEDMQQFKSFW--SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 T ++ ++ + + L GLR S+ + ++++ + Sbjct: 140 SVRQPIYLTLDESKKLLNSIDGPFKERDYAIITLFLNCGLRVSELVNINLDDIKDDKLT- 198 Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAK 276 K TV L D + + + + + K ++++ K Sbjct: 199 VIGKGNKQRTVYLNDACINAINTYLKVRPKEGVKDKKALFLSKRLKRISVKTVQYTVKKH 258 Query: 277 ATKAGV---NKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD-RIRL 331 A + SAH +R +AT+ G L G V + YT D +++ Sbjct: 259 LKNANLEGKKYSAHKLRHTAATLMYRYGNVDIRTLQKLLGHSNVSTTQIYTHVDDSQLKE 318 Query: 332 GIK 334 + Sbjct: 319 AVN 321 >gi|304388409|ref|ZP_07370516.1| tyrosine recombinase XerC [Neisseria meningitidis ATCC 13091] gi|304337590|gb|EFM03752.1| tyrosine recombinase XerC [Neisseria meningitidis ATCC 13091] Length = 305 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 40/293 (13%), Positives = 86/293 (29%), Gaps = 30/293 (10%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD----------YRKITTKHIR 120 Y ++ + ++ ++ +++ + Sbjct: 6 FAAHFDAYLENIVREGKSGHTVAAYRRDLEELFALLAQMPSEDAGGVPQGLSQRDFTAAL 65 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + R + + L+S R W V++ + +P ++ PK+ + +E + Sbjct: 66 RRLSQRGLNARTLARKLSSWRQYCAWLVKRGLLHTDPTADIKPPKQPERVPKALPQEWLN 125 Query: 181 QFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIIT 234 + +G + FE + SGLR S+ + + + T K Sbjct: 126 RMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQ 185 Query: 235 VELPDGFMKLLAMTPIGKETFFIN---NDKQKMNATQFSIWFKAKATKA-----GVNKSA 286 V L ++ L ++T + K A A G + S Sbjct: 186 VPLVGKSVEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHVSP 245 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 H +R A A + G ++ + YTK L + R+ Sbjct: 246 HMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK------LDFDHIARL 292 >gi|150017415|ref|YP_001309669.1| site-specific tyrosine recombinase XerC [Clostridium beijerinckii NCIMB 8052] gi|149903880|gb|ABR34713.1| phage integrase family protein [Clostridium beijerinckii NCIMB 8052] Length = 329 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 51/295 (17%), Positives = 98/295 (33%), Gaps = 48/295 (16%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRK--------------SGDFDYRKITTKHIRSGV 123 Y ++ ++N+ + R D D I + +R Sbjct: 23 YLETIKST--SINTIDGYRIDLTIFFRFMMIYKGKVNSDSVEFEDIDISVIDDEFLRGIK 80 Query: 124 ES------------RKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEG 170 R ++ + + + +++ FK+ + + + NP L +E PK Sbjct: 81 LRDLYAFLSFTEKYRDNSSYARARKVATLKSFFKFLFGKAKVITENPALELESPKINKRH 140 Query: 171 IRPWTKEDMQQFKSFWSEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226 T ++ S+ F L G+R S+ C + ++++ +I Sbjct: 141 PVYLTLNQSIHLLESLNKNDKNYSRDYCILMFFLNCGMRLSELCSIQIDKIRDDTLTIIG 200 Query: 227 QKTGTIITVELPDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAK 276 + TV L D +K LA P K+ F+++ +N I K Sbjct: 201 KGN-KERTVYLNDACLKALANYLNVRDDSKALPDNKKFLFLSSRNGPINKRTVEIMIKKH 259 Query: 277 ATKAGV---NKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD 327 T AG+ + H +R +AT+ G L + G + + YT D Sbjct: 260 ITNAGLTDDKYTPHKLRHTAATLMYKYGNVDIRSLQSILGHTNISTTQIYTHVDD 314 >gi|325201493|gb|ADY96947.1| tyrosine recombinase XerC [Neisseria meningitidis M01-240149] gi|325207473|gb|ADZ02925.1| tyrosine recombinase XerC [Neisseria meningitidis NZ-05/33] Length = 305 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 39/293 (13%), Positives = 83/293 (28%), Gaps = 30/293 (10%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD----------YRKITTKHIR 120 Y ++ + ++ ++ +++ + Sbjct: 6 FAAHFDAYLENIVREGKSGHTVAAYRRDLEELFALLAQMPSEDAGGVPQGLSQRDFTAAL 65 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + R + + L+S R W V++ + +P ++ PK+ + +E + Sbjct: 66 RRLSQRGLNARTLARKLSSWRQYCAWLVKRGLLHTDPTADIKPPKQPERVPKALPQEWLN 125 Query: 181 QFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIIT 234 + +G + FE + SGLR S+ + + + T K Sbjct: 126 RMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQ 185 Query: 235 VELPDGFMKLLAMT---PIGKETFFINNDKQKMNATQFSIWFKAKATKA-----GVNKSA 286 V L ++ L + K A A G + S Sbjct: 186 VPLVGKSVEALKNYLSLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHVSP 245 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 H +R A A + G ++ + YTK L + R+ Sbjct: 246 HMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK------LDFDHIARL 292 >gi|144898165|emb|CAM75029.1| Phage integrase [Magnetospirillum gryphiswaldense MSR-1] Length = 387 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 44/336 (13%), Positives = 100/336 (29%), Gaps = 24/336 (7%) Query: 28 GHGRRIRLPYPHESTFIPAYMSALTGSTP-----KREYINSPRKKPTTLKWLI-SEYRKS 81 G R +++ + + A A + T K + +Y Sbjct: 54 GRSREVKIGKAADISVEQARRKAKELRAQVALSGDPAGDKDKHRAVPTFKAFVTEQYLPF 113 Query: 82 AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLT 138 A + + + S ++I G +I T I + +PS+ + + Sbjct: 114 AKDRLRSYSDQESMCRL--RLIPTWGAKRLDEIRTTDIVELQRRLRDENLSPSTVNRHVA 171 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198 + +F A+R + R+ + R T ++M++ + A Sbjct: 172 LAKRVFNLALRWQAYEGRNPCQHVEFAREHQRERFLTPDEMRRLFQALDDEPSRSAANCI 231 Query: 199 LLY--SGLRCSDSCRAGVQHLQNNIFSI-----KTQKTGTIITVELPDGFMKLLAMTPIG 251 L +G R S++ A + +++ L+ + P Sbjct: 232 ALLALTGARKSEALNARFDDIDLPNRVWTVPASRSKSGKVRRIPLSEAAVKLLVGLPPEP 291 Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMA 309 + N + A + H +R A++ +G + + + Sbjct: 292 DCPWLFPNAASDGPIENIRRCWNRLKAAATLPSDTRPHDLRHSFASLLVGSGQSLYSVQT 351 Query: 310 TYGWKTVDQAETYTKGADR----IRLGIKNSRRISS 341 G + + Y+ ++ LGI+ S R + Sbjct: 352 ILGHASPNMTARYSHLSNTSLVDRVLGIQASDRAGA 387 >gi|170724856|ref|YP_001758882.1| tyrosine recombinase XerC [Shewanella woodyi ATCC 51908] gi|169810203|gb|ACA84787.1| tyrosine recombinase XerC [Shewanella woodyi ATCC 51908] Length = 299 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 33/275 (12%), Positives = 88/275 (32%), Gaps = 20/275 (7%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIRSGV---ESRKHTP 130 Y + L+ ++ ++ +++ + D + ++ + I+S + R +P Sbjct: 9 FESYLSAE--RQLSKHTVRNYLFELNRVDQLLDDSTSWLSVSREQIQSAMSQLHRRGLSP 66 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 S L++++ ++ +R+ + NP +++ PK+ + + + + Sbjct: 67 RSLSLTLSAVKQFCEFLLREGVIQTNPAINLSAPKQNKPLPKNMDPDSVSHLLEIDGDDP 126 Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLA 246 + + E SGLR ++ + +Q + K G + + + + Sbjct: 127 LSLRDKAIMELFYSSGLRLAELAALNISDIQFSERLVKVLGKGGKERILPIGKMAISAID 186 Query: 247 MTPIGKETFFINNDKQKMN-------ATQFSIWFKAKAT--KAGVNKSAHGVRKFSATIS 297 + +D + + H +R AT Sbjct: 187 KWLACRRLIPCEHDALFITNKGTRLAHRSIQARLSKWGQEQALNMRVHPHKLRHSFATHM 246 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 ++ A + G + + YT D L Sbjct: 247 LESSADLRAVQELLGHANLSTTQIYT-SLDFQHLA 280 >gi|167618124|ref|ZP_02386755.1| site-specific tyrosine recombinase XerD [Burkholderia thailandensis Bt4] Length = 312 Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 44/293 (15%), Positives = 90/293 (30%), Gaps = 26/293 (8%) Query: 65 RKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT---KHIR 120 R T++ + + L+ N+ ++ + + + Sbjct: 18 RDSRTSIDLFCDAMWLEH----GLSRNTLDAYRRDLQLFAQWLAARHAVSLDRTERPMLE 73 Query: 121 SGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + +R +S+ + L+ R + WAVR+ A++P L + K+ ++ + Sbjct: 74 GYIAARSDGKATSSNRRLSVFRRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQV 133 Query: 180 QQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIIT 234 + + + + R E + SGLR S+ + N ++ Sbjct: 134 EALLAAPDVDTPLGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERL 193 Query: 235 VELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV-- 282 V + + F+ M QF K A +A V Sbjct: 194 VPFGEVAHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRA 253 Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 + S H +R AT + GA + G + + YT A + Sbjct: 254 HLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKALHA 306 >gi|307942817|ref|ZP_07658162.1| tyrosine recombinase XerC [Roseibium sp. TrichSKD4] gi|307773613|gb|EFO32829.1| tyrosine recombinase XerC [Roseibium sp. TrichSKD4] Length = 320 Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 43/294 (14%), Positives = 86/294 (29%), Gaps = 31/294 (10%) Query: 71 LKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKS-GD-------FDYRKITTKHIRS 121 L + + A LA + +S+E Q +R G D ++ RS Sbjct: 17 LNTALGAWLDHLADERRLADKTLVSYERDVRQFLRFLTGHLGGAPCVKDLGELRPADYRS 76 Query: 122 GVESRKH----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 + R+ S + L+ +R ++ ++ + +V P+ +P T Sbjct: 77 FLAKRRQADKAGSRSLARGLSGVRSFLRFLEKRGELNAAAIGAVRPPRIAQSLPKPLTVP 136 Query: 178 DMQQF-------KSFWSEGSQPRLAFEFLLYSGLRCSDSCR--AGVQHLQNNIFSIKTQK 228 D ++ +S ++ L GLR S++ + T K Sbjct: 137 DAEEIVSGDLGLESETWIETRNMAVLTLLYGCGLRISEALSLTGRTAPKGDARTMRITGK 196 Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM-------NATQFSIWFKAKATKAG 281 G V + + + N + N + + G Sbjct: 197 GGKERLVPMLPVVTQAIETYIAQCPYPITANGPLFLGARGGALNPRLIQKAMEKMRSALG 256 Query: 282 VNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 + + H +R AT G + G ++ + YT+ L Sbjct: 257 LPASATPHALRHSFATHLLAGGGDLRTIQELMGHASLSSTQIYTQIDSASLLAA 310 >gi|260767555|ref|ZP_05876491.1| tyrosine recombinase XerC [Vibrio furnissii CIP 102972] gi|260617455|gb|EEX42638.1| tyrosine recombinase XerC [Vibrio furnissii CIP 102972] gi|315178748|gb|ADT85662.1| site-specific tyrosine recombinase [Vibrio furnissii NCTC 11218] Length = 309 Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 38/286 (13%), Positives = 91/286 (31%), Gaps = 22/286 (7%) Query: 68 PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRS-- 121 P +L + + + L+++++ +++ + + + + +R Sbjct: 9 PDSLGRPLERFYEYLRSEKGLSLHTQRNYKQQLTTMAQHLNHMGLNQWQQVDAGWVRQLA 68 Query: 122 -GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 SS L+S+R F + + + + NP V P++K + ++M Sbjct: 69 SKGMRDGMKASSLATRLSSLRSFFDFLILRGELNANPAKGVSAPRKKRPLPKNLDVDEMA 128 Query: 181 QFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236 Q + + R E + +GLR ++ V+ + + I+ Sbjct: 129 QLLEVNEDDPLSIRDRAMMELMYGAGLRLAELVAINVRDVSLSAGEIRVIGKGNKERKAP 188 Query: 237 LPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 + + + FI+ +++ K V + S Sbjct: 189 FAGQAKEWVGKWLKVRSSLLKGDEPALFISQLGARISHRNVQKRMAEWGHKQSVASHISP 248 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R AT ++ + G + + + YT D L Sbjct: 249 HKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTH-LDFQHLA 293 >gi|88607245|ref|YP_504674.1| tyrosine recombinase XerD [Anaplasma phagocytophilum HZ] gi|88598308|gb|ABD43778.1| tyrosine recombinase XerD [Anaplasma phagocytophilum HZ] Length = 311 Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 38/278 (13%), Positives = 87/278 (31%), Gaps = 33/278 (11%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRKHTPSSAIQFLTS 139 ++ N+ S++ + + + + + + + R ++ ++ + +++ Sbjct: 18 KGVSENTVCSYKCDLEDLSQFLRRNGLKIVDASYGDLCEYIRNLNGRAYSAATVARRVSA 77 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-----EGSQPRL 194 ++ L + + V + LS+E + R ++ D+ EG + Sbjct: 78 IKGLCSFLYKDRIVHSDLSLSLESCRLGRTLPRVISESDIGMLLDIAKADLSAEGKRLYA 137 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG--- 251 L SG+R S+ G + + II + + LL + Sbjct: 138 IVNILYSSGVRISELIHLGFFEIDAMLHEHVGDIGYIIIKGKGNRERLVLLNEVAMDSIR 197 Query: 252 -----------------KETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRK 291 + F Q ++ + K A AG++ S H R Sbjct: 198 AYLEVRKCFIAGENTESRWLFPGAKYDQCISRQRVGQLLKELAISAGIDPEKVSPHKFRH 257 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + G+ + G + + YT A Sbjct: 258 SFATHLLNNGSNIVFIQKMLGHVNLSTTQVYTHVASEQ 295 >gi|56417058|ref|YP_154132.1| integrase/recombinase ripx [Anaplasma marginale str. St. Maries] gi|222475424|ref|YP_002563841.1| integrase/recombinase ripx (xerC) [Anaplasma marginale str. Florida] gi|56388290|gb|AAV86877.1| integrase/recombinase ripx [Anaplasma marginale str. St. Maries] gi|222419562|gb|ACM49585.1| integrase/recombinase ripx (xerC) [Anaplasma marginale str. Florida] Length = 316 Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 31/272 (11%), Positives = 82/272 (30%), Gaps = 30/272 (11%) Query: 82 AHWGSLAVNSRISFESYFDQIIRKSGDFD---------YRKITTKHIRSGVESRKHTP-- 130 + N+ ++E R +++ + RS + R Sbjct: 22 REERRYSPNTVAAYERDIMDFYRSVCGEPCERSVSLQEVQELRSAEFRSWLADRFKQGKQ 81 Query: 131 -SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---- 185 +S + ++ +R F++ + + + ++ +P + + + M++ Sbjct: 82 SASNARAISVVRSFFRYLHHKCGMKSSVVFNISKPIVRRSLPKVLEEPQMRKVMEEPEDL 141 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 + L GLR S++ L+ + K + + ++ Sbjct: 142 HWTHRRDLAVSALLYGCGLRISEAVNIKFCDLRQDELR-VLGKGSKERVIPILPWVRCII 200 Query: 246 AMTPIGKETFFINN-----------DKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKF 292 ++ +++ T F+ K + G+ ++ H +R Sbjct: 201 DEYVASCPHQRVHGASSTEYVFVGLRGGRLSRTYFAYRMKGLRRRIGLPETTTPHTLRHS 260 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324 AT GA + G ++ + YT Sbjct: 261 FATHLFLEGADIRVVQELLGHASLATTQVYTH 292 >gi|290477110|ref|YP_003470023.1| site-specific tyrosine recombinase [Xenorhabdus bovienii SS-2004] gi|289176456|emb|CBJ83265.1| site-specific tyrosine recombinase [Xenorhabdus bovienii SS-2004] Length = 304 Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 42/279 (15%), Positives = 94/279 (33%), Gaps = 22/279 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGVESRKHTP 130 + + L+ + ++ + + G +++ + +R + Sbjct: 12 VETFLHYLRVERRLSPLTITNYRRHLVVLASMSLDMGIHEWQALDPAKVRMFASRSRRAG 71 Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +S L+S+R W V Q + NP +V P++K + +++ Q + Sbjct: 72 LQSASLALRLSSLRTFLDWMVIQGELDANPAKAVSAPRKKRHLPKNMDVDEVNQLLNINL 131 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243 + R E + +GLR S+ +HL+ + K V + ++ Sbjct: 132 NDPLSVRDRTMMEVMYGAGLRLSELVGLDCRHLELASGEVWVQGKGSKERKVPVGRIALE 191 Query: 244 LLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293 L +E F ++ ++++A F+ + GV + H +R Sbjct: 192 WLQRWLEMRELFEPEDNAVFISTKSGKRISARNVQKRFEQWGVRQGVNSHIHPHKLRHSF 251 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 AT ++ + G + + YT D L Sbjct: 252 ATHILESSGDLRAVQELLGHANLSTTQIYTH-LDFQHLA 289 >gi|196247646|ref|ZP_03146348.1| tyrosine recombinase XerC [Geobacillus sp. G11MC16] gi|196212430|gb|EDY07187.1| tyrosine recombinase XerC [Geobacillus sp. G11MC16] Length = 300 Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 46/285 (16%), Positives = 93/285 (32%), Gaps = 28/285 (9%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR--- 126 L EY + + + + + + +Q ++ G + ++ +R + Sbjct: 9 QLFLEYLQIE--KNYSQYTIVCYRRDIEQFLQFMNEEGIDELNEVAYSDVRLYLTKLYGQ 66 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQF 182 + S + ++S+R +K+ +R+ + A NP PK++ + +E+ + Sbjct: 67 QLASRSVARKISSLRSFYKFLLREGWAAENPFALAALPKKEQKIPNFLYREELEALFRVN 126 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGF 241 + G + E L +G R S+ C + L ++ K V Sbjct: 127 DGNTAVGQRNAALLELLYATGARVSECCHIRLSDLDFAASTVLIHGKGNKQRYVPFGRPA 186 Query: 242 MKLLAMT------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287 + L P F+N + A + N S H Sbjct: 187 REALERYIGGGRRELVGKLPADHRYLFVNARGNPLTPRGVRYILDRIVETAALTQNISPH 246 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRL 331 +R AT + GA + G + + YT DR+R Sbjct: 247 VLRHTFATHLLNEGADLRSVQELLGHAHLSSTQVYTHVTKDRLRR 291 >gi|160888416|ref|ZP_02069419.1| hypothetical protein BACUNI_00833 [Bacteroides uniformis ATCC 8492] gi|156862093|gb|EDO55524.1| hypothetical protein BACUNI_00833 [Bacteroides uniformis ATCC 8492] Length = 294 Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 39/272 (14%), Positives = 89/272 (32%), Gaps = 25/272 (9%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSGVESRKHTP-- 130 +Y + + + + + ++ R GD + + +R + S Sbjct: 9 DYLLHE--RNYSKGTVEYYRADILELQRFGEEMLGDLTPLDVDAELVREWIASLMDKGLA 66 Query: 131 -SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--- 186 ++ + L+S+R +K+ +R+ VA++P V PK+K + +M + Sbjct: 67 SNTINRKLSSVRTYYKFLLRRGKVAVDPLRKVTGPKKKKPLPVFLREGEMNRLLDDMDFG 126 Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDG--- 240 EG + + E +G+R S+ + + + T K + + Sbjct: 127 EGFEGCRDHMIIEMFYATGMRLSELIGLDDKDVDFSASLVKVTGKRNKQRLIPFDEELGR 186 Query: 241 -FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK------AGVNKSAHGVRKFS 293 + + + +K + + +S H +R Sbjct: 187 SMREYVNVRNEAVPVRSDAFFVRKNGKRLYRGIVACLVKRNLSKVVTVKKRSPHVLRHTF 246 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKG 325 AT + GA + G +++ E YT Sbjct: 247 ATAMLNNGADLGSIKELLGHESLATTEVYTHT 278 >gi|305666658|ref|YP_003862945.1| tyrosine type site-specific recombinase [Maribacter sp. HTCC2170] gi|88707463|gb|EAQ99707.1| tyrosine type site-specific recombinase [Maribacter sp. HTCC2170] Length = 363 Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 43/258 (16%), Positives = 90/258 (34%), Gaps = 9/258 (3%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ 135 EY A ++ ++ S+F+ I + I IR+ ++ H S Sbjct: 96 EEYLLKLELKRYANSTVRTYVSFFELFINHYKYKELNAINESDIRAFLQKLIHRNVSNSY 155 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195 S+ + K+ N +ERP+++++ + +K+++ + + R Sbjct: 156 LNQSINAI-KFYYEVVLGMPNRFYEIERPRKESKLPKVISKDEILTIIENTN-NIKHRCI 213 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIF-----SIKTQKTGTIITVELPDGFMKLLAMTPI 250 + L SGLR S+ + + + K K + + ++L Sbjct: 214 VQLLYGSGLRRSELLNLKINDVDSKRMLIHVSDSKGNKDRQTLLSKTCLHDLRLYFTKYR 273 Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELM 308 + F +K + K+ A +A + + H +R AT ++G + Sbjct: 274 PQVYLFEGRYGKKYSGESVLSIVKSAAERARIRVRVTPHVLRHSFATHLLESGTDLRHIQ 333 Query: 309 ATYGWKTVDQAETYTKGA 326 G + E YT A Sbjct: 334 VLLGHGSTKTTEIYTHVA 351 >gi|15608839|ref|NP_216217.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis H37Rv] gi|15841158|ref|NP_336195.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis CDC1551] gi|31792887|ref|NP_855380.1| site-specific tyrosine recombinase XerD [Mycobacterium bovis AF2122/97] gi|121637608|ref|YP_977831.1| site-specific tyrosine recombinase XerD [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148661498|ref|YP_001283021.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis H37Ra] gi|148822907|ref|YP_001287661.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis F11] gi|167969182|ref|ZP_02551459.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis H37Ra] gi|215403996|ref|ZP_03416177.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis 02_1987] gi|215411348|ref|ZP_03420156.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis 94_M4241A] gi|215427023|ref|ZP_03424942.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis T92] gi|215430593|ref|ZP_03428512.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis EAS054] gi|215445888|ref|ZP_03432640.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis T85] gi|218753409|ref|ZP_03532205.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis GM 1503] gi|219557623|ref|ZP_03536699.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis T17] gi|224990083|ref|YP_002644770.1| site-specific tyrosine recombinase [Mycobacterium bovis BCG str. Tokyo 172] gi|253799261|ref|YP_003032262.1| integrase [Mycobacterium tuberculosis KZN 1435] gi|254231896|ref|ZP_04925223.1| hypothetical protein TBCG_01654 [Mycobacterium tuberculosis C] gi|254364540|ref|ZP_04980586.1| hypothetical integrase/recombinase [Mycobacterium tuberculosis str. Haarlem] gi|254550710|ref|ZP_05141157.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260200764|ref|ZP_05768255.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis T46] gi|260204970|ref|ZP_05772461.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis K85] gi|289443158|ref|ZP_06432902.1| tyrosine recombinase XerD [Mycobacterium tuberculosis T46] gi|289554527|ref|ZP_06443737.1| integrase [Mycobacterium tuberculosis KZN 605] gi|289569749|ref|ZP_06449976.1| integrase [Mycobacterium tuberculosis T17] gi|289574368|ref|ZP_06454595.1| integrase [Mycobacterium tuberculosis K85] gi|289745862|ref|ZP_06505240.1| tyrosine recombinase xerD [Mycobacterium tuberculosis 02_1987] gi|289750256|ref|ZP_06509634.1| integrase [Mycobacterium tuberculosis T92] gi|289753791|ref|ZP_06513169.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis EAS054] gi|289757810|ref|ZP_06517188.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis T85] gi|289761856|ref|ZP_06521234.1| tyrosine recombinase xerD [Mycobacterium tuberculosis GM 1503] gi|294993190|ref|ZP_06798881.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis 210] gi|297634253|ref|ZP_06952033.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis KZN 4207] gi|297731240|ref|ZP_06960358.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis KZN R506] gi|298525199|ref|ZP_07012608.1| integrase/recombinase XerD [Mycobacterium tuberculosis 94_M4241A] gi|306775886|ref|ZP_07414223.1| integrase [Mycobacterium tuberculosis SUMu001] gi|306779704|ref|ZP_07418041.1| integrase [Mycobacterium tuberculosis SUMu002] gi|306784437|ref|ZP_07422759.1| integrase [Mycobacterium tuberculosis SUMu003] gi|306788804|ref|ZP_07427126.1| integrase [Mycobacterium tuberculosis SUMu004] gi|306793139|ref|ZP_07431441.1| integrase [Mycobacterium tuberculosis SUMu005] gi|306797519|ref|ZP_07435821.1| integrase [Mycobacterium tuberculosis SUMu006] gi|306803400|ref|ZP_07440068.1| integrase [Mycobacterium tuberculosis SUMu008] gi|306807982|ref|ZP_07444650.1| integrase [Mycobacterium tuberculosis SUMu007] gi|306967799|ref|ZP_07480460.1| integrase [Mycobacterium tuberculosis SUMu009] gi|306971995|ref|ZP_07484656.1| integrase [Mycobacterium tuberculosis SUMu010] gi|307079707|ref|ZP_07488877.1| integrase [Mycobacterium tuberculosis SUMu011] gi|307084286|ref|ZP_07493399.1| integrase [Mycobacterium tuberculosis SUMu012] gi|313658572|ref|ZP_07815452.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis KZN V2475] gi|54039885|sp|P67637|XERD_MYCBO RecName: Full=Tyrosine recombinase xerD gi|54042782|sp|P67636|XERD_MYCTU RecName: Full=Tyrosine recombinase xerD gi|2326744|emb|CAB10958.1| PROBABLE INTEGRASE/RECOMBINASE [Mycobacterium tuberculosis H37Rv] gi|13881378|gb|AAK46009.1| integrase/recombinase XerD [Mycobacterium tuberculosis CDC1551] gi|31618477|emb|CAD96395.1| PROBABLE INTEGRASE/RECOMBINASE [Mycobacterium bovis AF2122/97] gi|121493255|emb|CAL71726.1| Probable integrase/recombinase [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124600955|gb|EAY59965.1| hypothetical protein TBCG_01654 [Mycobacterium tuberculosis C] gi|134150054|gb|EBA42099.1| hypothetical integrase/recombinase [Mycobacterium tuberculosis str. Haarlem] gi|148505650|gb|ABQ73459.1| tyrosine recombinase [Mycobacterium tuberculosis H37Ra] gi|148721434|gb|ABR06059.1| hypothetical integrase/recombinase [Mycobacterium tuberculosis F11] gi|224773196|dbj|BAH26002.1| site-specific tyrosine recombinase [Mycobacterium bovis BCG str. Tokyo 172] gi|253320764|gb|ACT25367.1| integrase [Mycobacterium tuberculosis KZN 1435] gi|289416077|gb|EFD13317.1| tyrosine recombinase XerD [Mycobacterium tuberculosis T46] gi|289439159|gb|EFD21652.1| integrase [Mycobacterium tuberculosis KZN 605] gi|289538799|gb|EFD43377.1| integrase [Mycobacterium tuberculosis K85] gi|289543503|gb|EFD47151.1| integrase [Mycobacterium tuberculosis T17] gi|289686390|gb|EFD53878.1| tyrosine recombinase xerD [Mycobacterium tuberculosis 02_1987] gi|289690843|gb|EFD58272.1| integrase [Mycobacterium tuberculosis T92] gi|289694378|gb|EFD61807.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis EAS054] gi|289709362|gb|EFD73378.1| tyrosine recombinase xerD [Mycobacterium tuberculosis GM 1503] gi|289713374|gb|EFD77386.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis T85] gi|298494993|gb|EFI30287.1| integrase/recombinase XerD [Mycobacterium tuberculosis 94_M4241A] gi|308215637|gb|EFO75036.1| integrase [Mycobacterium tuberculosis SUMu001] gi|308327355|gb|EFP16206.1| integrase [Mycobacterium tuberculosis SUMu002] gi|308330798|gb|EFP19649.1| integrase [Mycobacterium tuberculosis SUMu003] gi|308334621|gb|EFP23472.1| integrase [Mycobacterium tuberculosis SUMu004] gi|308338408|gb|EFP27259.1| integrase [Mycobacterium tuberculosis SUMu005] gi|308342131|gb|EFP30982.1| integrase [Mycobacterium tuberculosis SUMu006] gi|308345601|gb|EFP34452.1| integrase [Mycobacterium tuberculosis SUMu007] gi|308349918|gb|EFP38769.1| integrase [Mycobacterium tuberculosis SUMu008] gi|308354539|gb|EFP43390.1| integrase [Mycobacterium tuberculosis SUMu009] gi|308358516|gb|EFP47367.1| integrase [Mycobacterium tuberculosis SUMu010] gi|308362455|gb|EFP51306.1| integrase [Mycobacterium tuberculosis SUMu011] gi|308366075|gb|EFP54926.1| integrase [Mycobacterium tuberculosis SUMu012] gi|323719791|gb|EGB28905.1| integrase [Mycobacterium tuberculosis CDC1551A] gi|326903315|gb|EGE50248.1| integrase [Mycobacterium tuberculosis W-148] gi|328459013|gb|AEB04436.1| integrase [Mycobacterium tuberculosis KZN 4207] Length = 311 Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 43/282 (15%), Positives = 90/282 (31%), Gaps = 36/282 (12%) Query: 78 YRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKH----- 128 Y +A N+ S+ + + G D K+ + + + + Sbjct: 11 YLDHLTIERGVAANTLSSYRRDLRRYSKHLEERGITDLAKVGEHDVSEFLVALRRGDPDS 70 Query: 129 -----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + SA + L ++R L ++A + ++ +V P + T +++ Sbjct: 71 GTAALSAVSAARALIAVRGLHRFAAAEGLAELDVARAVRPPTPSRRLPKSLTIDEVLSLL 130 Query: 184 S--------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIIT 234 + R E L +G R S++ + + + S+ K G Sbjct: 131 EGAGGDKPSDGPLTLRNRAVLELLYSTGARISEAVGLDLDDIDTHARSVLLRGKGGKQRL 190 Query: 235 VELPDGFMKLLAMTPIGKETF-----------FINNDKQKMNATQFSIWFKAKATKAGVN 283 V + + L + F+N +++ + A +AG+ Sbjct: 191 VPVGRPAVHALDAYLVRGRPDLARRGRGTAAIFLNARGGRLSRQSAWQVLQDAAERAGIT 250 Query: 284 --KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 S H +R AT + GA + G +V + YT Sbjct: 251 AGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYT 292 >gi|315606523|ref|ZP_07881538.1| tyrosine recombinase XerC [Prevotella buccae ATCC 33574] gi|315251929|gb|EFU31903.1| tyrosine recombinase XerC [Prevotella buccae ATCC 33574] Length = 293 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 41/275 (14%), Positives = 85/275 (30%), Gaps = 24/275 (8%) Query: 75 ISEYRKSAHWG-SLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRKHT 129 I ++ + + + + S+ G + + + IR +ES Sbjct: 3 IEKFLNYLKFELNRSERTVKSYGEDLRAFEEFFKNLDGHPSWESVDSDIIRDWMESMMDK 62 Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ-----Q 181 +S + L+++R +++A+ +E V +P V PK+K + + ++ Sbjct: 63 GNNATSINRRLSALRSFYRFALARELVVKDPAHDVVGPKKKKPLPQFLKENEINALLDSD 122 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDG 240 + + R +G+R S+ + T K + Sbjct: 123 MWEDTYDDMRARTIVMTFYETGMRLSELTGLRDADVDFVNHELKVTGKRNKQRIIPFGAE 182 Query: 241 FMKLLAMTPI--------GKETFFINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGVR 290 + LA FF+ + M Q K ++ ++ H +R Sbjct: 183 LAQTLADYKSLRDATERGNCGKFFLTDKGLAMQNAQVREIVKKHLSRVCTLKKRTPHVLR 242 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 AT + A L G + E YT Sbjct: 243 HTFATAMLNHEAGLESLKRLLGHARLSTTEIYTHT 277 >gi|134301812|ref|YP_001121780.1| phage integrase family protein [Francisella tularensis subsp. tularensis WY96-3418] gi|134049589|gb|ABO46660.1| phage integrase family protein [Francisella tularensis subsp. tularensis WY96-3418] Length = 292 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 30/255 (11%), Positives = 88/255 (34%), Gaps = 15/255 (5%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMR 141 + + + +++ Q+ + D + +T I ++ ++P + + L+S+R Sbjct: 18 KNYSQETINNYQRDLLQLNQALSDKNIISLTHSDILIWIKKLHAQGNSPKTLQRKLSSVR 77 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRLAFEF 198 F + + E ++ NP ++ PK + +++ + F+ Sbjct: 78 SFFNFLINSEIISQNPANGIKAPKDSKRLPKVVNTDELAYLLDINPSNDIEARDIACFDL 137 Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFI 257 L G+R S+ ++ + + +I+ V + L +++ Sbjct: 138 LYSCGIRLSELSSVELKDISISQKNIRVTGKGNKQRIVYFGTKTLSNLNRWLKIRDSLKP 197 Query: 258 NNDKQKMNATQFSIWFKAKATKAGV--------NKSAHGVRKFSATISADAGATAHELMA 309 ++D ++ + ++ + + + H +R A+ D+ + Sbjct: 198 SSDYLFISRDGKHLTNRSIQKRLEIFAQKYASRHIHPHMLRHSFASHVLDSSKDLLAVKD 257 Query: 310 TYGWKTVDQAETYTK 324 G + + YT Sbjct: 258 LLGHADISSTQIYTH 272 >gi|124514259|gb|EAY55773.1| putative phage integrase family protein [Leptospirillum rubarum] Length = 314 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 38/290 (13%), Positives = 84/290 (28%), Gaps = 21/290 (7%) Query: 71 LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESRK 127 ++ L+ + + + ++ ++ R G+ + + + R+ Sbjct: 5 VRDLLDAFEEDLRVASGRSPHTTQAYLLDLFAFARFLGEHGLSLLDFSPEDVTHYFAHRE 64 Query: 128 H-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 S + L+++R ++ R+ + ++ P+ +E++ + Sbjct: 65 DLAMRSRSRVLSAIRSWSRFLKRRG-LPAIDPDTLPVPRLPRNLPGVLDEEEILRLLEAP 123 Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 EG + R SGLR S+ + L N I+ L Sbjct: 124 DPKTDEGIRDRAILATFYASGLRVSELAELTLDRLNLNEEQIRVTGKGQKERVAFLDGLS 183 Query: 242 MKLLAMTPIGKETFFIN--------NDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRK 291 L + + + K A + G+++S H +R Sbjct: 184 CARLKLYLERVRPSTNTAEKTLFLTRRQTGFTRQGLWLLIKGYARQCGIDRSVSPHTLRH 243 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 AT G + G + E YT D L ++ Sbjct: 244 SFATHLLSHGMDIRSIQILLGHSDIQTTEIYTH-VDIRMLAEDLAKYHPR 292 >gi|49474798|ref|YP_032840.1| integrase /recombinase xerD [Bartonella quintana str. Toulouse] gi|49240302|emb|CAF26784.1| Integrase /recombinase xerD [Bartonella quintana str. Toulouse] Length = 315 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 36/288 (12%), Positives = 89/288 (30%), Gaps = 33/288 (11%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESR 126 +I + + + ++ +++ + + + + S + Sbjct: 5 AVIDHFLEMMSAERGASTHTLAAYQHDLQWAQDELSLHSVSLFSAQKEDLIGLLSLMHIL 64 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-------------- 172 SS + L+++R +++ + +P ++ P++ + Sbjct: 65 GFAASSQARRLSTLRQFYRFLYAEGMRVDDPSHDLDAPRQGRPLPKVISEDGVTKLLDLA 124 Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGT 231 + ++ E L +GLR S+ VQ ++ +SI K Sbjct: 125 QLEVNQADYGSKDHFRALRLQVLIEMLYATGLRISELVSLPVQAVRGKEYSILVRGKGKK 184 Query: 232 IITVELPDGFMKLLAMTPIGKET---------FFINNDKQKMNATQFSIWFKAKATKAGV 282 V L ++L+ ++ F ++ + + K A +AG+ Sbjct: 185 ERIVLLSKKACQVLSQWLSLRDQRKDAASLYLFPARSETGYIARQVVARELKGLAKRAGI 244 Query: 283 N---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 S H +R A+ GA + G + + YT + Sbjct: 245 KSSGFSPHVLRHAFASHLLQNGADLRAVQHLLGHSDIATTQIYTHVLE 292 >gi|253580998|ref|ZP_04858259.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847661|gb|EES75630.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 312 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 41/280 (14%), Positives = 94/280 (33%), Gaps = 27/280 (9%) Query: 71 LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVESRKH 128 L ISEY K+ L + ++ Q D+ + +T + + +K+ Sbjct: 7 LSNFISEYLKTCETIKKLDSKTIKAYRIDLSQFHTFMLPQEDFTEKSTLNSFLSLLHKKY 66 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT--------------EGIRPW 174 P +A + + +++ F + V +E ++ NP + R+ + Sbjct: 67 KPKTAKRKIATLKAFFHYLVYEESLSQNPFEKLNVKFREPQVLPRIVPNTIIEIFLRTMY 126 Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--GTI 232 ++ + ++ + E L +G+R S+ C + + + I Sbjct: 127 KQKKLAPTTYKYNSILRDIAVIELLFATGVRVSELCSLTLSQIDFTTYKIIINGKGSKER 186 Query: 233 ITVELPDGFMKLLAMTPIGKE-------TFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 I + ++L+ + FFIN ++ + A ++ Sbjct: 187 ILQIGNEDVKEILSEYYAAFKTDISKTGWFFINRLHKRYSEESVRSMIVKYLKLAAIDMH 246 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + H R AT+ ++ + G ++ E YT Sbjct: 247 ITPHMFRHSFATLLLESDVDIRYIQRMLGHSSIKTTEIYT 286 >gi|169826675|ref|YP_001696833.1| hypothetical protein Bsph_1093 [Lysinibacillus sphaericus C3-41] gi|168991163|gb|ACA38703.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41] Length = 632 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 39/263 (14%), Positives = 86/263 (32%), Gaps = 12/263 (4%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--T 129 + +I+EY S +L+ + + + ++ + + +T + IR + Sbjct: 355 RKIINEYLLSMKLENLSAGTIYQYRFFLNKFFKDKRENCLS-LTPEEIRKYFIPLQKGLK 413 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM--QQFKSFWS 187 ++ + LT + + + V + Y+ ++P P++ + KE++ + Sbjct: 414 AATIKKQLTILSSFYNFCVDEGYIHMSPIKKRWFPRKSKSIPKFLEKEEIAKVRQLCEKR 473 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247 + R+ E LL SG R S+ + + + G I +L Sbjct: 474 NQLRNRVMVELLLTSGCRISEVNMLNKSDIDLENRTAQVLGKGKKIREVHFSETCAILLE 533 Query: 248 TPIGKETFFINNDKQKMNATQFSIW-FKAKATKAGVN------KSAHGVRKFSATISADA 300 + T+ I + + G++ H R AT Sbjct: 534 RLLESYIDEHPALFISERGTRLGIRQMQKIVEQVGIDAKIKSSLHPHRFRHTFATELLTK 593 Query: 301 GATAHELMATYGWKTVDQAETYT 323 GA + G K + + Y Sbjct: 594 GADLSFIADELGHKQLQTTKIYA 616 Score = 39.7 bits (91), Expect = 0.74, Method: Composition-based stats. Identities = 21/213 (9%), Positives = 54/213 (25%), Gaps = 13/213 (6%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV--ESRKHTPS 131 +I+E+ + ++ I + Q + ++ IT I + Sbjct: 131 IINEFLVNLKNSGKRKSTIICKRVFLQQFFKDF-KKEFIYITITEIEDWFLKNGHLWSDK 189 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 + L+++R + + + P R R + + + Sbjct: 190 TGSGILSALRTFYDFCWETRIIENP-------PLRNKRKDRNFQDDGGFLIQIRLPNIEN 242 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251 + E+LL + + T T+ F + Sbjct: 243 RKTINEYLLNLKHKNKSHRTIEEYRFILQAYFKDTDTHF---TLLKNYDFQNWIQSYKGV 299 Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284 K ++N + K ++ + Sbjct: 300 KNEKTLDNYMSIFRSFYIFCVRKKYLERSPIPY 332 >gi|83595067|ref|YP_428819.1| tyrosine recombinase XerD subunit [Rhodospirillum rubrum ATCC 11170] gi|83577981|gb|ABC24532.1| tyrosine recombinase XerD subunit [Rhodospirillum rubrum ATCC 11170] Length = 328 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 40/298 (13%), Positives = 88/298 (29%), Gaps = 31/298 (10%) Query: 63 SPRKKPTTLKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT----- 116 +P + +L + + A + ++ + +T Sbjct: 10 APSSRGPSLAVQAEAFLEMMLAERGAARRTVEAYGRDLRDYAAFLREKGLDGLTVSRPTL 69 Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + + + + P S + L+ +R + V + +P + ++ P+ R ++ Sbjct: 70 RAYLATMAAAGLAPRSQARKLSCLRQFHGFLVSEGRRPDDPTIGLDSPRLGRPLPRVLSE 129 Query: 177 EDMQQFKSFWS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTG 230 ++ G + R+ E L +GLR S+ + + +I K Sbjct: 130 AEVDALLVAAEAGEGARGLRARVLLELLYSTGLRVSELVSLPLSVANRDPETILVRGKGD 189 Query: 231 TIITVELPDGFMKLLAMT----------------PIGKETFFINNDKQKMNATQFSIWFK 274 V L L + F + + + F+ Sbjct: 190 KERLVPLGLPARAALRDWLIARPTTLPASGAARRRADRFLFPSSAAEGHLTRDGFAKMLG 249 Query: 275 AKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 A +AG++ S H +R A+ GA + G + + YT D Sbjct: 250 ELALRAGIDPARVSPHVLRHCFASHMLAHGADLRGVQTLLGHADIATTQIYTHVLDDR 307 >gi|317477767|ref|ZP_07936960.1| tyrosine recombinase XerC [Bacteroides sp. 4_1_36] gi|316906112|gb|EFV27873.1| tyrosine recombinase XerC [Bacteroides sp. 4_1_36] Length = 294 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 39/272 (14%), Positives = 89/272 (32%), Gaps = 25/272 (9%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSGVESRKHTP-- 130 +Y + + + + + ++ R GD + + +R + S Sbjct: 9 DYLLHE--RNYSKGTVEYYRADILELQRFGEEMLGDLTPLDVDAELVREWIASLMGKGLA 66 Query: 131 -SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--- 186 ++ + L+S+R +K+ +R+ VA++P V PK+K + +M + Sbjct: 67 SNTINRKLSSVRTYYKFLLRRGKVAVDPLRKVTGPKKKKPLPVFLREGEMNRLLDDMDFG 126 Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDG--- 240 EG + + E +G+R S+ + + + T K + + Sbjct: 127 EGFEGCRDHMIIEMFYATGMRLSELIGLDDKDVDFSASLVKVTGKRNKQRLIPFDEELGR 186 Query: 241 -FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK------AGVNKSAHGVRKFS 293 + + + +K + + +S H +R Sbjct: 187 SMREYVNVRNEAVPVRSDAFFVRKNGKRLYRGIVACLVKRNLSKVVTVKKRSPHVLRHTF 246 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKG 325 AT + GA + G +++ E YT Sbjct: 247 ATAMLNNGADLGSIKELLGHESLATTEVYTHT 278 >gi|297181069|gb|ADI17268.1| site-specific recombinase xerd [uncultured alpha proteobacterium HF0070_17D04] Length = 361 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 52/303 (17%), Positives = 98/303 (32%), Gaps = 37/303 (12%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIR-------KSGDFDYRKITTKHIRSGV 123 L++E+ ++ LA NS ++E + D + + + Sbjct: 62 DQLVTEFLQAMAADRGLAANSIAAYERDLASCLESLSQAGRHFDSCDADDLR--CLLAEW 119 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK------E 177 S + L+++R + W V + +PC ++ PK+ + ++ Sbjct: 120 TLSGLAARSVARRLSALRQMMAWLVEERVRPDDPCRWIDNPKQPAALPKSLSEEEITALI 179 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVE 236 + + +E + E L +GLR S+ V + I T K G V Sbjct: 180 TAARALAPAAEALRMTAMLELLYATGLRVSELVSLPVDQFRRELEAVIVTGKGGKERLVA 239 Query: 237 LPDGFMKLLAMTP--------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KS 285 + A + + ++ QF+ K AG++ S Sbjct: 240 MGTPARDATAAWMAARDATEAFVTSPYLFPFRESHVSRQQFAAALKRVGAAAGIDPRRVS 299 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345 H VR AT + GA L G + + YTK R++ +V + Sbjct: 300 PHVVRHSFATHMLNRGADLRGLQMLLGHADISTTQIYTKTRP---------DRLAGLVAA 350 Query: 346 DDP 348 P Sbjct: 351 AHP 353 >gi|221211426|ref|ZP_03584405.1| tyrosine recombinase XerD [Burkholderia multivorans CGD1] gi|221168787|gb|EEE01255.1| tyrosine recombinase XerD [Burkholderia multivorans CGD1] Length = 316 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 50/304 (16%), Positives = 93/304 (30%), Gaps = 28/304 (9%) Query: 49 SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG- 107 A G+ + + R + + + LA N+ ++ + Sbjct: 9 EAGDGTAAPSPALLASRASIDLFCDAL--WLEH----GLARNTLDAYRRDLTLFSQWLAA 62 Query: 108 --DFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164 D + + +R +S+ + L+ R + WAVR+ + +P L + Sbjct: 63 THDAALDAADETMLTGYIAARSDGKATSSNRRLSVFRRYYGWAVREHRASADPTLRIASA 122 Query: 165 KRKTEGIRPWTKEDMQQFK----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220 K+ ++ ++ G + R E + SGLR S+ + N Sbjct: 123 KQAARFPSTLSEAQVEALLGAPDIATPLGLRDRTMLELMYASGLRVSELVTLKTVEVGLN 182 Query: 221 IFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQF 269 ++ V + + F+ M QF Sbjct: 183 EGVVRVMGKGSKERLVPFGEVAHGWIERYLREARPALLGARAADALFVTARGDGMTRQQF 242 Query: 270 SIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 K A +A V + S H +R AT + GA + G + + YT A Sbjct: 243 WNIIKRHAQQADVRAHLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVA- 301 Query: 328 RIRL 331 R RL Sbjct: 302 RERL 305 >gi|126729514|ref|ZP_01745327.1| tyrosine recombinase XerD [Sagittula stellata E-37] gi|126709633|gb|EBA08686.1| tyrosine recombinase XerD [Sagittula stellata E-37] Length = 311 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 39/273 (14%), Positives = 85/273 (31%), Gaps = 33/273 (12%) Query: 90 NSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRKHTPSSAIQFLTSMRVLF 144 N+ +++ + D T + ++ + ++ + L++++ ++ Sbjct: 25 NTLAAYQRDLTHVADWLTDHALDFATAQKKDVESYLIDCDTLGLSRATRARRLSAIKQIY 84 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-----WSEGSQPRLAFEFL 199 ++A + NP + + P R+ + + E + + +E + R A Sbjct: 85 RFAFEEGLREDNPAVQIAGPGREKRLPKTLSVEQVDRLLDAAANHGRTEADRARNACLMQ 144 Query: 200 --LYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKLLAMT-------- 248 +G+R ++ V + + + K G V L + L Sbjct: 145 VLYATGMRVTELVSLPVSAARGDPRMLLIRGKGGKERMVPLSPPAREALTAWLSARDAAA 204 Query: 249 ---------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATI 296 F + + F + K A +AGV + H +R AT Sbjct: 205 SEAQAATGAVPSPFLFPSHGKAGHLTRHAFYMLIKEFALEAGVPPSEVTPHTLRHAFATH 264 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRI 329 GA + G V E YT + Sbjct: 265 LLANGADLRAIQTLLGHADVATTEIYTHVLEER 297 >gi|284006600|emb|CBA71861.1| phage integrase [Arsenophonus nasoniae] Length = 297 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 47/279 (16%), Positives = 95/279 (34%), Gaps = 22/279 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGVESRKHTP 130 I ++ + L+ + I+++ ++ + D D ++ T H+R V + Sbjct: 5 IDDFLRYLRVERQLSPVTLINYQRQLAVLVDMAIDMDINDWAQLETSHVRMMVAKCRRQG 64 Query: 131 SSAIQ---FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 A L+S+R W V Q + NP ++ PK K + +++ Q + Sbjct: 65 LQAASLALRLSSLRSFLDWLVGQGLITANPAKTIRAPKNKRHLPKNIDVDEVNQLLNIDL 124 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243 + R E + +GLR S+ QHL ++ V L ++ Sbjct: 125 ADPLSVRDRTMLEVMYGAGLRLSELINLNCQHLDLQSGEVRVMGKGSKERKVPLGRIAVE 184 Query: 244 LLAMTPIGKETFFIN--------NDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293 L ++ + ++++A F + GV + H +R Sbjct: 185 WLIRWLEMRQQYAKQDEAVFISIQRGKRISARNVQKRFALWGIRQGVRSHIHPHKLRHSF 244 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 AT ++ + G + + YT D L Sbjct: 245 ATHILESSGDLRAVQELLGHANLSTTQVYTH-LDFQHLA 282 >gi|126175915|ref|YP_001052064.1| phage integrase family protein [Shewanella baltica OS155] gi|125999120|gb|ABN63195.1| phage integrase family protein [Shewanella baltica OS155] Length = 376 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 45/334 (13%), Positives = 96/334 (28%), Gaps = 11/334 (3%) Query: 21 IIYYFRKGHGRRIR-LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79 F+ R++ + ++ T A + A R + TL E+ Sbjct: 43 YYVRFQYQGLRQLHVIGNANDITLDDARLEARKHIDALRYGVVREPAPSLTLCAFAEEFF 102 Query: 80 KSAHWGSLAVNSR-ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138 ++ S + I GD +T +HI + + A + L Sbjct: 103 PRY-ARHWKPSTLLNSQRGFTRHIAPVLGDVPLAALTRQHIEQWFDGMHASKGMANRLLP 161 Query: 139 SMRVLFKWAVRQEYVA-----INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193 + V+ + A EY + + K S Sbjct: 162 LLSVMMQQAEVYEYRPAQSNPCKGFKRYKSTHSERYLSEEELKRLWLALDSHEKASPVAV 221 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253 + L+ +G RC++ C + + + KTG L + + Sbjct: 222 MVLRLLILTGCRCNEVCSVKWADYRQGHWYLPDSKTGAKTVFLSSFARELLSDWPQVSEH 281 Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYG 312 F+ + Q + +++ + + H +R A+I+ + G Sbjct: 282 LFWHQSPSQPFTPARLDRFWRPFRETIHLNDVRIHDLRHTYASIAVKHNINILTIGRLLG 341 Query: 313 WKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346 + YT A R + + +S ++ + Sbjct: 342 HALPETTLKYTHLA--KRDVQQAANVVSQLIAGE 373 >gi|225175744|ref|ZP_03729737.1| integrase family protein [Dethiobacter alkaliphilus AHT 1] gi|225168668|gb|EEG77469.1| integrase family protein [Dethiobacter alkaliphilus AHT 1] Length = 300 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 44/280 (15%), Positives = 90/280 (32%), Gaps = 27/280 (9%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQI-----IRKSG-DFDYRKITTKHIRSG----VE 124 ++Y + L+ + + + ++ TKH+R + Sbjct: 12 FTDYLEIE--RGLSDGTVEGYRRDLNIFTQLMVREFFPQGMILDQLETKHVRRFLVYLKK 69 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQ 180 R + + + L S+R F + Q YV NP ++ K TK++ + Sbjct: 70 ERSNDAGTRNRKLASLRSYFSFLEIQGYVESNPVQQLKNVKTAKLLPVFLTKDESDRLIN 129 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPD 239 + + LL +G R + + L ++ + L D Sbjct: 130 AARMHNKPPYRDYAMMRVLLQTGCRLDEMVSLNLDSLNLEDRYMRIIGKGNKERMIPLTD 189 Query: 240 GFMKLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGV 289 LA ++ F+N ++++ + F +AG+NK + H + Sbjct: 190 KTCAALAEYLAGRLPEDKNEQAVFLNQRGRRISHRGVQLIFNQTCKEAGLNKERLTVHKL 249 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R T+ +AG + G + + E Y R Sbjct: 250 RHTCFTMLLNAGVDLPTIKDIAGHENISSTEIYVHVTQRE 289 >gi|163869253|ref|YP_001610509.1| site-specific tyrosine recombinase XerC [Bartonella tribocorum CIP 105476] gi|161018956|emb|CAK02514.1| integrase/recombinase XerC [Bartonella tribocorum CIP 105476] Length = 322 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 34/273 (12%), Positives = 78/273 (28%), Gaps = 29/273 (10%) Query: 82 AHWGSLAVNSRISFESYFDQI----IRKSGDFD----YRKITTKHIRSGVESRKH---TP 130 ++ + ++E Q + G + +R+ + R+ + Sbjct: 34 VKTRRMSAQTAQAYERDTRQFLFFLCQHLGQAPTLNDLAHLRVSDLRAYLAYRRTNNVSA 93 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE-------DMQQFK 183 S + + +R FK+ R+ V + ++ PK +P + Q + Sbjct: 94 RSLSRGVAGIRSFFKYLSREGIVNVPAAQLIKSPKHPKSLPKPLAIQSALHIVKQENQLE 153 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--IKTQKTGTIITVELPDGF 241 + ++ L G+R S++ + + + T K V L Sbjct: 154 NEPWINARNAAVLMLLYGCGMRISEALSLTPEQFSDPEKTSLFITGKGRKTRLVPLIKIV 213 Query: 242 MKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGVN--KSAHGVRKF 292 + + +N + + G+ + H +R Sbjct: 214 YEAVQNYLKCCPYPLRDNQPLFRGARGGPLQPAIIQKTVRNLRASLGLPETATPHTLRHS 273 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKG 325 AT G + G ++ +TYT Sbjct: 274 FATHLLSRGGDLRTIQELLGHASLSTTQTYTHV 306 >gi|126173818|ref|YP_001049967.1| phage integrase family protein [Shewanella baltica OS155] gi|125997023|gb|ABN61098.1| phage integrase family protein [Shewanella baltica OS155] Length = 376 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 45/334 (13%), Positives = 95/334 (28%), Gaps = 11/334 (3%) Query: 21 IIYYFRKGHGRRIR-LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79 F+ R++ + ++ T A + A R + TL E+ Sbjct: 43 YYVRFQYQGLRQLHVIGNANDITLDDARLEARKQIDALRYGVVREPAPSLTLCAFAEEFF 102 Query: 80 KSAHWGSLAVNSR-ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138 ++ S + I GD +T +HI + + A + L Sbjct: 103 PRY-ARHWKPSTLLNSQRGFTRHIAPVLGDVPLAALTRQHIEQWFDGMHASKGMANRLLP 161 Query: 139 SMRVLFKWAVRQEYVA-----INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193 + V+ + A EY + + K S Sbjct: 162 LLSVMMQQAEVYEYRPAQSNPCKGFKRYKSTHSERYLSEEELKRLWLALDSHEKASPVAV 221 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253 + L+ +G RC++ C + + + KTG L + + Sbjct: 222 MVLRLLILTGCRCNEVCSVKWADYRQGHWYLPDSKTGAKTVFLSSFARELLSDWPQVSEH 281 Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYG 312 F+ + Q +++ + + H +R A+I+ + G Sbjct: 282 IFWHQSPSQPFTPACLDRFWRPFRETIHLNDVRIHDLRHTYASIAVKYNINILTIGRLLG 341 Query: 313 WKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346 + YT A R + + +S ++ + Sbjct: 342 HALPETTLKYTHLA--KRDVQQAANVVSQLIAGE 373 >gi|170017324|ref|YP_001728243.1| site-specific recombinase XerD [Leuconostoc citreum KM20] gi|169804181|gb|ACA82799.1| Site-specific recombinase XerD [Leuconostoc citreum KM20] Length = 304 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 35/283 (12%), Positives = 86/283 (30%), Gaps = 28/283 (9%) Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-------FDYRKITTKHIRS 121 TT + L +Y +S + + ++ S D+ + + + + + Sbjct: 6 TTEEKLYRDYLQSE--RQYSALTLKAYLSDIDEFVAFLERNGGFQTFKTVQTLDVRVYLN 63 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + R +S + ++S+R+ +++ + + NP +V K + + + +MQ Sbjct: 64 DLYERHLARTSIARKISSLRMFYQFLIANHFATDNPFENVALRKHQNHLPEFFYETEMQV 123 Query: 182 -----FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF------------SI 224 + + E L +G R ++ + + + Sbjct: 124 LFEIAYDQKDPLWQRNAALLECLYATGARVAEIATLTLSQIDFQQRLILIHGKGNKDRYV 183 Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-- 282 + L F+N+ Q + A + ++ + Sbjct: 184 PFGHYAQKAMQQYIAQLRPELVANCPENTVVFVNHRGQPITAAGITYILNTLMNRSTLTG 243 Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 H +R AT + GA + G + + YT Sbjct: 244 KIHPHMLRHTFATHLLNNGADMRTVQELLGHVNLSTTQMYTHV 286 >gi|145635531|ref|ZP_01791230.1| tyrosine recombinase [Haemophilus influenzae PittAA] gi|145267194|gb|EDK07199.1| tyrosine recombinase [Haemophilus influenzae PittAA] Length = 295 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 38/271 (14%), Positives = 89/271 (32%), Gaps = 20/271 (7%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESR 126 ++ Y ++ ++ +++ D II+ D T + I + + + Sbjct: 4 ALNRYWDYLRIERQMSPHTITNYQHQLDAIIKILAQQDIHAWTQVTPSVVRFILAESKKQ 63 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 S L+++R + V+Q + +NP + PK+ + E +QQ + Sbjct: 64 GLKEKSLALRLSALRRFLSFLVQQGELKVNPATGISAPKQGRHLPKNMDGEQVQQLLAND 123 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 + R E + SGLR S+ + + + ++ V Sbjct: 124 SKEPIDIRDRAILELMYSSGLRLSELQGLDLNSINTRVREVRVIGKGNKERVVPFGRYAS 183 Query: 243 KLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293 + E F++ +++ + + G+ + + H +R Sbjct: 184 HAIQEWLKVRALFNPKDEALFVSQLGNRISHRAIQKRLETWGIRQGLNSHLNPHKLRHSF 243 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324 AT +A + + G + + YT Sbjct: 244 ATHMLEASSDLRAVQELLGHSNLSTTQIYTH 274 >gi|83720485|ref|YP_441282.1| site-specific tyrosine recombinase XerD [Burkholderia thailandensis E264] gi|257140051|ref|ZP_05588313.1| site-specific tyrosine recombinase XerD [Burkholderia thailandensis E264] gi|83654310|gb|ABC38373.1| tyrosine recombinase XerD [Burkholderia thailandensis E264] Length = 333 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 52/326 (15%), Positives = 103/326 (31%), Gaps = 28/326 (8%) Query: 34 RLPYPHESTFIPAYMSALTGSTPKREYINSP--RKKPTTLKWLISE-YRKSAHWGSLAVN 90 R+P P ++ +A + P E SP R T++ + + L+ N Sbjct: 6 RIPAPGPASGGAGRGAAPSADRPADELAASPAWRDSRTSIDLFCDAMWLEH----GLSRN 61 Query: 91 SRISFESYFDQIIRKSGDFDYRKITT---KHIRSGVESRKH-TPSSAIQFLTSMRVLFKW 146 + ++ + + + + +R +S+ + L+ R + W Sbjct: 62 TLDAYRRDLQLFAQWLAARHAVSLDRTERPMLEGYIAARSDGKATSSNRRLSVFRRYYGW 121 Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYS 202 AVR+ A++P L + K+ ++ ++ + + + R E + S Sbjct: 122 AVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALLAAPDVDTPLGLRDRTMLELMYAS 181 Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETF------ 255 GLR S+ + N ++ V + + Sbjct: 182 GLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVPFGEVAHGWIERYLRDARPALLGARA 241 Query: 256 ----FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMA 309 F+ M QF K A +A V + S H +R AT + GA + Sbjct: 242 ADALFVTARGDGMTRQQFWNIIKRHAQQADVRAHLSPHTLRHAFATHLLNHGADLRVVQL 301 Query: 310 TYGWKTVDQAETYTKGADRIRLGIKN 335 G + + YT A + Sbjct: 302 LLGHSDISTTQIYTHVARERLKALHA 327 >gi|302038654|ref|YP_003798976.1| tyrosine recombinase XerD [Candidatus Nitrospira defluvii] gi|300606718|emb|CBK43051.1| Tyrosine recombinase XerD [Candidatus Nitrospira defluvii] Length = 299 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 45/276 (16%), Positives = 94/276 (34%), Gaps = 24/276 (8%) Query: 74 LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSGVESRKHT 129 I Y L+ N+ ++++ D D R+++ + ++ + Sbjct: 4 FIERYWDHVRIARGLSRNTLLAYQRDVASFQHYLRDQQVSDVREMSPPLLAGFLDHLHQS 63 Query: 130 PS---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK----EDMQQF 182 S + L ++R LF++ ++ +A NP +S+ R + + ++ Sbjct: 64 GLASPSRARALAAVRSLFRFLKQEGMIAANPTVSLRSASRARRLPKTLSPEEVTRLLELP 123 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGF 241 E + R E L +G+R S+ V + + T K V + Sbjct: 124 PRPLPEDHRDRAMVEVLYAAGVRVSELISLRVDQCNLDVGYIGITGKGEKQRVVPIGRPA 183 Query: 242 MKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 ++ + F++ + F +A+A +AG+ + S H + Sbjct: 184 IEAVQAYLLAARPALLKQRSSRFVFVSRRGTPLTRQAFWKLLRARAHRAGIARIPSPHML 243 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 R AT GA + A G + + YT Sbjct: 244 RHSFATHLLQRGADLRSVQAMLGHADIATTQIYTHV 279 >gi|763052|gb|AAA85500.1| integrase [Streptococcus phage T270] Length = 362 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 49/345 (14%), Positives = 102/345 (29%), Gaps = 33/345 (9%) Query: 11 VTKERTRHGKIIY----YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 + + +G+ Y Y +G+R + T +A + ++ P+ Sbjct: 3 IKSYKKENGETAYKFLLYAGYVNGKRKYIRREGFKT----KQAARETLISLQAELDKPKS 58 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 T L ++ K + + I+ K I I+ E Sbjct: 59 -SMTFGALTDQWLKEYEKTVQGSTYLKTERNINKHILPKLDKVKIGDINPLLIQRLTEEW 117 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-----IRPWTKEDMQQ 181 + + L +R + AVR Y+ NP L + PK K + + Sbjct: 118 CNDLKYGGKILGLVRNILNLAVRYGYINNNPALPITPPKIKRKRKMNNNFYTLDQLKQFL 177 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--------------FSIKTQ 227 ++ + F L ++G+R + L N T+ Sbjct: 178 ELVEKTDNIEKIALFRLLAFTGIRKGELLALTWDDLNGNTLSINKAVTRTQVGLEIDVTK 237 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ---KMNATQFSIWFKAKATKAGVNK 284 + + L D +++L T + + M + W + + Sbjct: 238 TKSSDRLISLDDETLEILQELHETFPTSTLMFQSKSGGIMTPSLPRKWLLQIIKGIDLPQ 297 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGAD 327 + HG R A++ ++G + ++ G + YT Sbjct: 298 ITIHGFRHTHASLLFESGLSLKQVQHRLGHGDLQTTMNVYTHITQ 342 >gi|255009008|ref|ZP_05281134.1| putative tyrosine recombinase [Bacteroides fragilis 3_1_12] gi|313146748|ref|ZP_07808941.1| tyrosine type site-specific recombinase [Bacteroides fragilis 3_1_12] gi|313135515|gb|EFR52875.1| tyrosine type site-specific recombinase [Bacteroides fragilis 3_1_12] Length = 379 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 45/299 (15%), Positives = 104/299 (34%), Gaps = 16/299 (5%) Query: 41 STFIPAYMSALTGSTPKREYINSPRKKPTTLK-WLISEYRKSAHWGSLAVNSRISFESYF 99 + F Y++ K + +K T++ L + + + + ++ + +Y Sbjct: 67 ADFFDRYVNLAFIDYSKVTDTTNKPEKEKTIRPELPAGFLEKLKQMRYSDHTIRVYTTYI 126 Query: 100 DQIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155 + + ++I+ I + ++ + + Q + +++ + + Sbjct: 127 GDFQQYFAGSNLKRISPDEINAYLLHLIDKKNISSCQQNQRINAIK----FYYEKVLGNE 182 Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215 C V R KR+ +KE+++ F + E + + L +GLR S+ Sbjct: 183 RHCYKVNRAKREKTLPDVLSKEEVKDFLTVAKEDLRFYCMYSLLYSAGLRISELLNLKPD 242 Query: 216 HLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ---KMNATQFS 270 + + ++ K L F+ L I + +++ + + + S Sbjct: 243 DINISRSLIHVRQGKGKKDRYTLLSKPFINKLEEYRIAYQPEKWLFEREAGVQFSESIVS 302 Query: 271 IWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 K A +AG+ K H R AT + G + G + + E Y AD Sbjct: 303 KKLKEIAHEAGITKRVYPHLFRHSFATHLIEQGTDLKIIKELLGHENIKTTEMYVHIAD 361 >gi|319781237|ref|YP_004140713.1| tyrosine recombinase XerD [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167125|gb|ADV10663.1| tyrosine recombinase XerD [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 305 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 46/305 (15%), Positives = 92/305 (30%), Gaps = 40/305 (13%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQI--IRKSGDFDYRKITTKHIRSGVESRKHTPS 131 I + + A N+ S+ + G + + +R + Sbjct: 7 IEAFLEMMSAERGAAENTLSSYRRDLEDASGAIDGGLAGAAAADIRAYLDDIAARGFAAT 66 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE--- 188 S + L+++R FK+ + +P +++ PK+ + ++ D + + Sbjct: 67 SQARKLSAIRQFFKFLYAEGLRGDDPTGTLDSPKKGRPLPKTMSEADTGRLIDRAAIEAG 126 Query: 189 -----------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVE 236 + E L +GLR S+ V Q + F + K V Sbjct: 127 DVSSGDGDSLASLRLHALVEVLYATGLRVSELVGLPVTVAQRDDRFFMVRGKGDKERMVP 186 Query: 237 LPDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---N 283 L + F +D ++ F+ K A +AG+ Sbjct: 187 LSAKARAAMKTWLAARAKVPAFADSPFLFPAASDSGYLSRQVFARDLKGLAARAGIASAK 246 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343 S H +R A+ GA + G + + YT + R+ +V Sbjct: 247 ISPHVLRHAFASHLLQNGADLRAVQQLLGHADISTTQIYTHVLEE---------RLVRLV 297 Query: 344 DSDDP 348 + P Sbjct: 298 NDHHP 302 >gi|225181363|ref|ZP_03734807.1| integrase family protein [Dethiobacter alkaliphilus AHT 1] gi|225167944|gb|EEG76751.1| integrase family protein [Dethiobacter alkaliphilus AHT 1] Length = 299 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 38/281 (13%), Positives = 92/281 (32%), Gaps = 28/281 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD------FDYRKITTKHIRSGVESRKHTPSSAIQFLT 138 + + ++ ++ Q + D + +H + +++ + + + L Sbjct: 16 KNASPHTIRNYAEDLGQFFQFLEKEGASFPQDLDYLAIRHFLALMQAHGYERRTIARKLA 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRL 194 ++R + R+ Y+A ++ P+ + + +++ + + G + Sbjct: 76 AIRSFLRHLNREGYLADTSWTTISTPRIGKKLPKFLYVDEVFRLLAAPDSQTPAGLRDVA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--GTIITVELPDGFMKLLAMTPIGK 252 EFL SG+R S+ +Q L N + LLA G+ Sbjct: 136 ILEFLYSSGVRVSELVALELQSLDLNRGQAIVMGKGGCERLVHLGRFARRSLLAYLEQGR 195 Query: 253 ETF-------------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297 ++N +++ + + + K S H +R AT Sbjct: 196 PEILRKNADGDREGALWLNKYGTRLSDRGVRRIVEKYVRQVSLAKGISPHSIRHSFATHL 255 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337 +AGA + G + + YT D+++ + Sbjct: 256 LNAGADLRVVQELLGHVNISTTQIYTHITRDQLKEVYNGAH 296 >gi|157826278|ref|YP_001493998.1| site-specific tyrosine recombinase XerC [Rickettsia akari str. Hartford] gi|166918897|sp|A8GQ15|XERC_RICAH RecName: Full=Tyrosine recombinase xerC gi|157800236|gb|ABV75490.1| site-specific tyrosine recombinase XerC [Rickettsia akari str. Hartford] Length = 305 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 44/291 (15%), Positives = 98/291 (33%), Gaps = 28/291 (9%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGVE 124 ++ LI +++K + + + IS+ + + I IR Sbjct: 6 IQELIDKWQKYLVLQRNYSNYTVISYNNDLKNFLEFMNYYNSELVTINHIKNADIRLIRS 65 Query: 125 SRK------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 T SS + L++++ +++ + + + S++ PK+ + +++D Sbjct: 66 WLAKRNYDNFTTSSIARGLSAVKNFYRFLEKTTQLNSHIIFSIKSPKKTKLLPKALSEDD 125 Query: 179 MQQFKSFW-------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 + + + + SGLR S++ HLQN F K Sbjct: 126 VVVSLEHIEEYGNVKWVELRNKSLLVLIYASGLRISEALSITKLHLQNLEFIRIIGKGSK 185 Query: 232 IITVEL-------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN- 283 + ++++L E F +K+ F+ G+ Sbjct: 186 ERIIPWLPIAKNLITQYLEILPYKLGDNEPIFRGKRGKKLQPQVFNRELIKLKHFYGLPQ 245 Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 +AH R A+ + GA + G K++ + YTK + + + Sbjct: 246 HLTAHSFRHSFASHLLERGAELRSIQELLGHKSLSTTQNYTKTSIKRLEAV 296 >gi|313158817|gb|EFR58200.1| phage integrase, N-terminal SAM domain protein [Alistipes sp. HGB5] Length = 300 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 46/275 (16%), Positives = 91/275 (33%), Gaps = 29/275 (10%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGV----ESRKH 128 Y + + + +++ +Q + FD R +TT+ IR + E K Sbjct: 7 RYLSAE--RRYSPLTVRNYKHDVEQFLAWLDCDESRFDPRSVTTEQIREWIIFRTEEGKL 64 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI------RPWTKEDMQQF 182 + S + + S+R F+W R V + + K R T Sbjct: 65 SAGSMNREVASLRAFFRWLHRTGAVEKDIFRMISTLKTSRRLPAFVPESRMTTIVSECGP 124 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 S + + L GLR ++ + S++ + V + + Sbjct: 125 DSEDFQTERNSLIILMFYACGLRLAELVGIDRSDFSADYTSLRVRGKGDKQRMVPILEFL 184 Query: 242 MKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289 + + E I + ++++ + + + T+AGV KS H + Sbjct: 185 REKILHYLGLIERQNICISSEKALFLTHKGKRISRSVVYRTVQEELTRAGVQGKKSPHVL 244 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT + GA E+ G ++ + YT Sbjct: 245 RHTFATHLLNGGADMREIQELLGHASLQATQVYTH 279 >gi|221369617|ref|YP_002520713.1| Phage integrase family protein [Rhodobacter sphaeroides KD131] gi|221162669|gb|ACM03640.1| Phage integrase family protein [Rhodobacter sphaeroides KD131] Length = 350 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 68/339 (20%), Positives = 120/339 (35%), Gaps = 27/339 (7%) Query: 18 HGKI-IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76 GKI +Y++ G RI P F + + P TL+ LI+ Sbjct: 3 SGKIAVYHYAWRGGPRIDAA-PGSPEF-------VAAYNAAHAARDRPVHHDGTLQALIT 54 Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-----TPS 131 Y+K+ + LA +R + + QI GD + + +R + + Sbjct: 55 AYQKTPAFTDLAEATRKGYIRHIRQIEADFGDMPVQALADPRVRGEFLDWRDRLAQKSKR 114 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 SA + + + WA + + +NPC R + WT+ + F + Sbjct: 115 SADYAFSVLARILSWAHDRRKIPVNPCEKPGRLYAGSRADSIWTEAQIAAFLAAAPR--P 172 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251 RL F +++G R +D + ++ KTG + + + + Sbjct: 173 VRLPFLLAIWTGQRQADILQLSWTAYDGKAIRLRQSKTGRHMLIPVAQPLRDAMEEARAR 232 Query: 252 KE--TFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELM 308 + T + Q + F F AG+ + H +R + T A AG + E+ Sbjct: 233 RRTLTICETSRGQPWTSDGFKTSFGKAQASAGIEGVTFHDLRGTAVTFLALAGCSVPEIA 292 Query: 309 ATYGWKTVDQAE-----TYTKGADRIRLGIKNSRRISSV 342 A G ++ AE Y G DR RLG ++ Sbjct: 293 ALTGH-SLKDAEGILSKHYL-GRDR-RLGESAVAKLERH 328 >gi|222087447|ref|YP_002545984.1| tyrosine recombinase XerC [Agrobacterium radiobacter K84] gi|221724895|gb|ACM28051.1| tyrosine recombinase XerC [Agrobacterium radiobacter K84] Length = 311 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 39/284 (13%), Positives = 88/284 (30%), Gaps = 30/284 (10%) Query: 77 EYRKSA-HWGSLAVNSRISFESYFDQIIRKS-GDF-------DYRKITTKHIRSGVESRK 127 + + L+ ++ ++E Q + G D + + R + +R+ Sbjct: 18 RWLEVLGQERRLSAHTLDAYERDTRQFLTFLTGHLGGPASINDIQALRPADFRGFLAARR 77 Query: 128 HTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ---- 180 + A + L +R L ++ ++ V +V PK+ +P + Sbjct: 78 KDGAGARSLGRNLAGLRSLLRYLEKKGLVNAAGAGAVRSPKQPKSLPKPLSDTQAITVVS 137 Query: 181 ---QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------ 231 Q ++ L GLR S++ ++ +++ G Sbjct: 138 DEAQLHEEPWIAARDAAVLTLLYGCGLRISEALDLTPDDIRPGATALRITGKGNKTRLVP 197 Query: 232 --IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAH 287 + E + + + F K++ + + G+ + H Sbjct: 198 LLPVVAEAVERYRAICPYHLDAGSPLFRGARGGKLHPGIIQRGMQKLRSAFGLPDTATPH 257 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +R AT G + G ++ + YT G D+ RL Sbjct: 258 ALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYT-GVDQSRL 300 >gi|194014676|ref|ZP_03053293.1| tyrosine recombinase XerC [Bacillus pumilus ATCC 7061] gi|194013702|gb|EDW23267.1| tyrosine recombinase XerC [Bacillus pumilus ATCC 7061] Length = 305 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 42/279 (15%), Positives = 88/279 (31%), Gaps = 28/279 (10%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVESRK 127 L EY + + + + + ++ +R G + T+ + + Sbjct: 10 LFIEYLQIE--KNYSALTISGYTEAIEEFVRFMNVQGIDGFEEVSYQDTRIYLTEAYEKG 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFK 183 T + + ++++R +K+ +R++ V NP L V PK+ +E+ Sbjct: 68 LTRRTISKKVSALRSFYKFLLREQLVKENPFLLVSLPKQDKRIPSFLYEEELKELFTVSD 127 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFM 242 G + + E L +G+R S+ C L ++ ++ K V Sbjct: 128 VSTPLGQRNQAILELLYATGMRVSELCSLKESDLDLSMDTVLVHGKGSKQRYVPFGSYAH 187 Query: 243 KLLAMT-------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAG--VNKSAH 287 + L F+N + KA ++ H Sbjct: 188 EALITYLEDGRLKLKAKGNDRADAYVFLNQRGAPLTDRGVRFILTELMKKASGTLHIHPH 247 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 +R AT + GA + G + + YT + Sbjct: 248 MLRHTFATHLLNEGADLRSVQELLGHSNLSSTQVYTHVS 286 >gi|24376272|ref|NP_720380.1| phage integrase family site specific recombinase [Shewanella oneidensis MR-1] gi|24344844|gb|AAN52980.1|AE015912_5 site-specific recombinase, phage integrase family [Shewanella oneidensis MR-1] Length = 376 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 46/334 (13%), Positives = 96/334 (28%), Gaps = 11/334 (3%) Query: 21 IIYYFRKGHGRRIR-LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79 F+ R++ + ++ T A + A R + S TL E+ Sbjct: 43 YYVRFQYQGLRQLHVIGNANDITLDDARLEARKHIDALRYGVVSEPVPSLTLCAFAEEFF 102 Query: 80 KSAHWGSLAVNSR-ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138 ++ S + I GD +T +HI + + A + L Sbjct: 103 PRY-ARHWKPSTLLNSQRGFTRHIAPVLGDVPLAALTRQHIEQWFDGMHASKGMANRLLP 161 Query: 139 SMRVLFKWAVRQEYVA-----INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193 + V+ + A EY + + K S Sbjct: 162 LLSVMMQQAEVYEYRPAQSNPCKGFKRYKSTHSERYLSEEELKRLWLALDSHEKASPVAV 221 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253 + L+ +G RC++ C + + + KTG L + + Sbjct: 222 MVLRLLILTGCRCNEVCSVKWADYRQGHWYLPDSKTGAKTVFLSSFARELLSDWPQVSEH 281 Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYG 312 F+ + Q +++ + + H +R A+I+ + G Sbjct: 282 LFWHQSPSQPFTPACLDRFWRPFRETIHLNDVRIHDLRHTYASIAVKHNINILTIGRLLG 341 Query: 313 WKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346 + YT A R + + +S ++ + Sbjct: 342 HALPETTLKYTHLA--KRDVQQAANVVSQLIAGE 373 >gi|56964041|ref|YP_175772.1| site-specific tyrosine recombinase [Bacillus clausii KSM-K16] gi|56910284|dbj|BAD64811.1| site-specific tyrosine recombinase [Bacillus clausii KSM-K16] Length = 300 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 40/285 (14%), Positives = 94/285 (32%), Gaps = 25/285 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR--- 126 LI ++ + + + + + Q G + + + + +R + Sbjct: 8 LIDQFVRYVQVEKNGSKWTIDHYRKDVQQFAAFMSAAGIAEIKDVKHQDVRLFISELVDK 67 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 K+ S + L+++R K+ + + +++ NP L PK+KT +E+M+ + Sbjct: 68 KYARKSIARKLSALRSFGKFLMEEGHISENPFLHTHLPKQKTRLPTFLYEEEMEHWLLAL 127 Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE----- 236 + + E L +G+R S+ + +++ V Sbjct: 128 PANKPLEKRDKAIIELLYATGMRVSECSMLALDQWDRVSETVRVFGKGRKERYVPVGKMA 187 Query: 237 ------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHG 288 L F+N ++ + + +A + S H Sbjct: 188 VSAVESYIHEARPKLLRANDPTSHLFLNYRGGALSDRSIRKIVEKRLDEAAMQKKISPHA 247 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 +R AT +AGA + G +++ + YT + + Sbjct: 248 IRHSFATHLLNAGADLRAVQELLGHQSLKTTQVYTHVSKERLYAV 292 >gi|323493805|ref|ZP_08098923.1| integrase [Vibrio brasiliensis LMG 20546] gi|323311939|gb|EGA65085.1| integrase [Vibrio brasiliensis LMG 20546] Length = 342 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 51/324 (15%), Positives = 100/324 (30%), Gaps = 29/324 (8%) Query: 15 RTRHG-KIIYYFRK--GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + G K + R +G+R R + AY + + +E++ P K L Sbjct: 3 VKKDGEKWLVDLRPSGRNGKRFR-RKFDKKAEALAYEKHILSTHHNKEWLGLPVDKRR-L 60 Query: 72 KWLIS-EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV---ESRK 127 LI + KS + ++ + I R+ GD I I + +R Sbjct: 61 SELIDIWWIKSGQLK----RTAANYRKKVELICRELGDPTVNNIDATLISNWQLERMARG 116 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 ++ + + + +F + ++ +P +++P + + T + Q + Sbjct: 117 QKANTVRRLTSCLSNVFSVLIETGDFTGAHPLKDLKQPAPEKSEMTYLTLKQTQDLLDYL 176 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246 + E L +G R ++ +L KTG TV + + Sbjct: 177 KNDWELLKIVEISLATGSRWRETVTLKSSNLSPYRIRFTNTKTGKPRTVPISKQLYDDIY 236 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK----SAHGVRKFSATISADAGA 302 G + K G + H +R A+ G Sbjct: 237 PENGGNLFSEDP-----------QVRLVRIFDKLGFDLPKGQKVHVLRHTFASHFVMNGG 285 Query: 303 TAHELMATYGWKTVDQAETYTKGA 326 L G +++Q TY A Sbjct: 286 DILTLKEILGHASINQTMTYAHLA 309 >gi|293374710|ref|ZP_06621018.1| tyrosine recombinase XerC [Turicibacter sanguinis PC909] gi|325840598|ref|ZP_08167079.1| tyrosine recombinase XerC [Turicibacter sp. HGF1] gi|292646624|gb|EFF64626.1| tyrosine recombinase XerC [Turicibacter sanguinis PC909] gi|325490247|gb|EGC92580.1| tyrosine recombinase XerC [Turicibacter sp. HGF1] Length = 301 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 37/281 (13%), Positives = 93/281 (33%), Gaps = 25/281 (8%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKI-----TTKHIRSGVESR 126 I +Y + + ++ +++E + + + + + Sbjct: 3 EWILKYMDYLKYEKRYSEHTLLNYERDVKEWFSFCQREGINEFEFDYSDVRSYLNDCYTH 62 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQF 182 + + S+ + L+S+R +++ ++++ V NP L ++ PK+ + +E+ Sbjct: 63 QLSRSTMSRKLSSLRSYYQFLLKEKQVKQNPFLIMKGPKKAETLPQFLYEEELQALFDSI 122 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-------------NNIFSIKTQKT 229 G + E L +G+R S+ C+ L + + + Sbjct: 123 DQTSILGCRNYALLELLYGTGIRVSECCQMKQSQLNVELGTVLIHGKGGKDRYVPIGEFA 182 Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT--KAGVNKSAH 287 I L +LL + + + F+N+ + + + H Sbjct: 183 VEAIEAYLQRSRPQLLKKSNLETDVLFLNHLGTPLTERGVRDILSRMTNQTAKHIKVAPH 242 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 +R AT + GA + G + + + YT + Sbjct: 243 MIRHTFATHLLNNGADLRSVQELLGHENLSSTQIYTHVSKE 283 >gi|237738086|ref|ZP_04568567.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817] gi|229419966|gb|EEO35013.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817] Length = 353 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 54/354 (15%), Positives = 109/354 (30%), Gaps = 46/354 (12%) Query: 17 RHGKII---YYFRKGHGR--RIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + GK +Y+R G + Y + + + T Sbjct: 5 KDGKTWRAVFYYRDYTGTNIQTTKRGFATKREALDY--------EREFIMKATFNNRMTF 56 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR---- 126 + L Y + L ++ ++ + + +I+ IT +R + Sbjct: 57 QSLYELYMEDMTHR-LRKHTMMTKKKIIEDKILPFFSKLKLDSITPVKVRQWQNTLISGV 115 Query: 127 -----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDMQ 180 ++P+ + +F +AV+ + NPC +K E + WT E+ + Sbjct: 116 SIKNTPYSPTYLKTINNQLTAIFNYAVKYHNMKENPCHKAGSMGKKKAEEMIIWTPEEFE 175 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------- 232 +F F + F L ++G+R + ++ + +I K+ Sbjct: 176 KFSQFIKNKMPNYVGFNILFWTGIRIGELLALTLKDIDLRNKTISISKSYQRLEGEDVIT 235 Query: 233 --------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284 V +PD ++LL F + + KAG+ K Sbjct: 236 APKTTKSKRVVTIPDSVVELLERYLKMLYKPSKTMRLFPYTKHLFENDLRIYSEKAGLKK 295 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK---GADRIRLGI 333 H +R A+ + G + G + ++ Y AD L I Sbjct: 296 IRIHDLRHSHASYLFNNGVDILTIAKRLGHENIETTLGIYAHTYTSADEKLLKI 349 >gi|332111079|gb|EGJ11111.1| tyrosine recombinase XerD subunit [Rubrivivax benzoatilyticus JA2] Length = 310 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 48/278 (17%), Positives = 88/278 (31%), Gaps = 23/278 (8%) Query: 86 SLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSGVESRKH--TPSSAIQFLTSM 140 LA + ++ + + + R ++A + LT Sbjct: 33 GLAPLTLAAYRRDLTLYAGWLARRHAKRLDDSREADLLAYIAERHTATRATTANRRLTVF 92 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAF 196 + F+WA+R+ VA +P L ++ ++ + ++ ++ + G + R Sbjct: 93 KRYFRWALREHLVAADPTLRLQSARQPLRVPKSLSERQVEALLAAPETDTALGLRDRAML 152 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT------- 248 E + SGLR S+ HL ++ V + L Sbjct: 153 ELMYGSGLRVSELVGLKSVHLGLAEGVLRVVGKGSKERIVPFGEEAHGWLQRYLGEARAA 212 Query: 249 ---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303 + F+ M F + K A AG+ S H +R AT + GA Sbjct: 213 ILGGQASDALFVTARGGAMTRQAFWLLVKKYARAAGILVPLSPHTLRHAFATHLLNHGAD 272 Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 + G + YT A R RL ++R Sbjct: 273 LRAVQMLLGHADIGTTTIYTHVA-RERLRQLHARHHPR 309 >gi|146277571|ref|YP_001167730.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025] gi|145555812|gb|ABP70425.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025] Length = 311 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 50/290 (17%), Positives = 97/290 (33%), Gaps = 33/290 (11%) Query: 72 KWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSG---VES 125 + IS + ++ A N+R+++ + + + ++ Sbjct: 7 ERWISAFLEAQAAELDAARNTRLAYGRDLKDFAGWLARRSEEFATADRAAVEAYLVFCDA 66 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + +P++ + L+S+R L+++A + + A NP + + P R + E++ + Sbjct: 67 QGLSPATRARRLSSIRQLYRFAHEEGWRADNPAIRLRGPGRARRLPKTLEIEEVDRLLDA 126 Query: 186 WSEGSQ-------PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVEL 237 + + R E L +G+R S+ V + N I K G V L Sbjct: 127 ARDKGRRAADQVRNRCLLELLYATGMRVSEMVGLPVAAARGNPQMILVRGKGGKERMVPL 186 Query: 238 PDGFMKLLAMT----------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 + LA + F + + F + K A AG Sbjct: 187 SPPAREALADWLRVRDEAEAAGQKAGRVPSRFLFPGSGAAGHLTREYFYVLIKQIAVLAG 246 Query: 282 VN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 V+ + H +R AT GA + G + E YT D Sbjct: 247 VDPSKVTPHTLRHAFATHLLAGGADLRVIQTLLGHADLSTTEIYTHVLDE 296 >gi|268609330|ref|ZP_06143057.1| site-specific tyrosine recombinase XerC [Ruminococcus flavefaciens FD-1] Length = 327 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 46/304 (15%), Positives = 103/304 (33%), Gaps = 42/304 (13%) Query: 73 WLISEYRKSAH-WGSLAVNSRISFESYFDQIIRK-------------------SGDFDYR 112 ++EY L+ + + +R + D R Sbjct: 11 EFLNEYLVHIKLVQLLSERTIQGYYEDIRLFLRFIYMNSHNIDDSPENIDISDFPEDDLR 70 Query: 113 KITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRK 167 KIT I + + + R + + + ++S+R FK+ + + +P ++ P K Sbjct: 71 KITVSDIYNFIFYVSDERHNNDKARYRKISSLRSFFKYLEKAAHIIEKDPTKDLDVPVPK 130 Query: 168 TEGIRPWTKEDMQQFKSF--WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225 + + + + ++ + L G+R S+ + + ++ Sbjct: 131 KSLPKFLSLNESMRLLQASDNADSKRDYCIITLFLNCGIRLSELVGINISDIDFYENRMR 190 Query: 226 T-QKTGTIITVELPDGFMKLLAMTPIGKETF---------FINNDKQKMNATQFSIWFKA 275 K + L + + L I + FI+N ++++ + + Sbjct: 191 VLGKGNKERMIYLNEACVDALNKYLIIRRDNQKAKAELALFISNQNKRISKRRVQQIVEN 250 Query: 276 KATKAGVNK---SAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADR-IR 330 T AG++ + H +R +AT+ G A L G +V E YT ++ +R Sbjct: 251 TLTAAGLDGKGITTHKLRHTAATLMYQYGDADVLTLKELLGHASVATTEIYTHLSNENVR 310 Query: 331 LGIK 334 I+ Sbjct: 311 SAIE 314 >gi|229817386|ref|ZP_04447668.1| hypothetical protein BIFANG_02648 [Bifidobacterium angulatum DSM 20098] gi|229785175|gb|EEP21289.1| hypothetical protein BIFANG_02648 [Bifidobacterium angulatum DSM 20098] Length = 324 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 41/288 (14%), Positives = 88/288 (30%), Gaps = 38/288 (13%) Query: 77 EYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTPSS 132 ++ L+ + ++ S D+ G + I+ H+ + +S Sbjct: 21 QFIAHIDVERGLSKATVTAYTSDLDRYCVWLREAGITEPASISRNHVEEYIAHLDSHGAS 80 Query: 133 AI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE------------ 177 A + L S+ ++A+ Q VA + +V+ PK + T + Sbjct: 81 ARSKARNLASIHEFHRFALAQHAVADDVSAAVKAPKGASTLPDVLTVDEVARLLDCAPVP 140 Query: 178 -DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-----TQKTGT 231 + + + EF+ +G R S++ + + N + +++ Sbjct: 141 APGCVMDVPHAVLMRDKALLEFMYATGCRVSEAVGTDLNDIDLNERVARLLGKGSKQRLV 200 Query: 232 IITVELPDGFMKLLAMTPIGKETF-----------FINNDKQKMNATQFSIWFKAKATKA 280 + + L E F+N Q+M+ +A Sbjct: 201 PVGEYACAAMTRYLDEGRSLLEGCAKSKAPERSAVFLNKRGQRMSRQSVWEVVNQAGKRA 260 Query: 281 GV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 + H +R AT GA + G +V + YT + Sbjct: 261 HIGKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVS 308 >gi|229145530|ref|ZP_04273914.1| Integrase/recombinase [Bacillus cereus BDRD-ST24] gi|228637983|gb|EEK94429.1| Integrase/recombinase [Bacillus cereus BDRD-ST24] Length = 326 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 42/291 (14%), Positives = 91/291 (31%), Gaps = 20/291 (6%) Query: 53 GSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS--GDFD 110 + + + + + + K+ L + +++ ++R G Sbjct: 16 EELDVLGELEAAEEYIESWEEAFGLFHKAGILKGLREATLFHYQAQLKSLLRALPVGIKP 75 Query: 111 YRKITTKHIRS----GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 Y ++T +HI R PS+ + + + FK+ +++ INP +++ K Sbjct: 76 Y-EVTKEHIEDAIVFCKVKRNLQPSTINIVIRANKTFFKFLFENKHIPINPIKDIKKLKA 134 Query: 167 KTEGIRPWTKEDMQQFK----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222 + + + T + ++ G + L+ +GLR ++ V + Sbjct: 135 RAKEVEVLTPKQLKTLLSKVDRKTWNGIRDYAILLVLIETGLRQNEILNLSVLDVVWEQD 194 Query: 223 S--IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT-----QFSIWFKA 275 +K KT V + D L + + + ++ Sbjct: 195 LLLVKHTKTYHQRKVPITDNTKNALKRWLLIRGEVYTKRLFCGISGKALTNSGLRQMIYK 254 Query: 276 KATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 A A + S H R A+I G L G + YT Sbjct: 255 YAKLANIQSRCSPHIFRHTFASIYLRNGGDLFSLQQIMGHSDITMTRRYTH 305 >gi|281425134|ref|ZP_06256047.1| integrase/recombinase XerD [Prevotella oris F0302] gi|281400726|gb|EFB31557.1| integrase/recombinase XerD [Prevotella oris F0302] Length = 293 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 37/275 (13%), Positives = 97/275 (35%), Gaps = 24/275 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVESRKHT 129 I ++ + + + + ++ + D + + + +R+ +E Sbjct: 3 IDKFLDYLRFERNRSELTVKNYGDDLRSFEKFFRDLENPVSWESVDSDVVRNWMERMMDE 62 Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ----- 181 +S + L+++R +++A+ ++ V +P + PK+ + +++M + Sbjct: 63 GNNAASINRRLSALRSFYRFALSRKLVDKDPVHGITGPKKGKPLPQFLKEKEMDRLLERK 122 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDG 240 + E + R +G+R S+ + + + T K + + Sbjct: 123 CWTRSFEDVRDRAIIMTFYETGIRLSELTGLDDKMVDFAEYQLKVTGKRNKQRIIPFGEE 182 Query: 241 FMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290 L ++ F+ ++ Q+M+A+ K +K +S H +R Sbjct: 183 LCTTLRDYMECRDREVDRLSEALFVTDEGQRMSASLVRERVKRSLSKVCTLNKRSPHVLR 242 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 AT + A + G +++ E YT Sbjct: 243 HTFATAMLNHKAGIESVKKLLGHESLSTTEIYTHT 277 >gi|150025257|ref|YP_001296083.1| tyrosine recombinase XerC [Flavobacterium psychrophilum JIP02/86] gi|149771798|emb|CAL43272.1| Tyrosine recombinase XerC [Flavobacterium psychrophilum JIP02/86] Length = 298 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 37/275 (13%), Positives = 89/275 (32%), Gaps = 30/275 (10%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSGVESR---K 127 +Y + + + +++ + +++ IRS + S + Sbjct: 8 FQDYL--LKEKNYSPLTALAYGKDLQFFQTFLEIKFDNTPLEEVSYTLIRSWIVSMVDAE 65 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED-----MQQF 182 + +S + + S++ +K+ ++ + + INP + K + P+++ + Q Sbjct: 66 MSNTSVNRKIASLKAFYKFLLKTKQIEINPLSKHKALKTPKKIQIPFSEAELDTVLTQIQ 125 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIIT------- 234 EG + +L + +G+R S+ + + K Sbjct: 126 YKAGFEGMRDKLIIDLFYTTGIRRSELISLQISNTNLVAGTIKVIGKRNKERIIPLLPVI 185 Query: 235 ------VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHG 288 + L+ N + + +F + K V KS H Sbjct: 186 IKQIKVYLAERKQLSLIVAKENLILLSNGNKANETFVYRLINDYFSNVSEK--VKKSPHM 243 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 +R AT + GA + + G ++ + YT Sbjct: 244 LRHTFATHMLNHGADLNSIKELLGHSSLASTQVYT 278 >gi|109900374|ref|YP_663629.1| phage integrase [Pseudoalteromonas atlantica T6c] gi|109702655|gb|ABG42575.1| tyrosine recombinase XerC subunit [Pseudoalteromonas atlantica T6c] Length = 298 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 42/276 (15%), Positives = 104/276 (37%), Gaps = 17/276 (6%) Query: 66 KKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 + +L+ L+ +Y + +LA S +++ I + + ++T H+R + Sbjct: 2 SEQPSLQPLLGKYFDYLKYERNLAAKSIENYQRQLASICQALTITAWPELTVDHVRQVLN 61 Query: 125 ---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT---KED 178 + +P S L+++R + V E ++ NP +V+ PK+ + + Sbjct: 62 QARRQGLSPRSIALRLSALRGYCAYLVELEVLSSNPAKAVQAPKQGSPLPKQLNVDEMHQ 121 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 + F G + + E GLR ++ ++ LQ++ K + + Sbjct: 122 LLDFDDDSLLGVRDKAMLELTYSCGLRLAELADLNLKSLQDDGQLRVIGKGSKERILPVG 181 Query: 239 DGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288 +K L + F++ +++++ Q + + A + +++ + H Sbjct: 182 KTALKCLGEWLKVRGVLADGDEPALFLSKHRRRISHRQIAKRMQLWAKQQHLDQDINPHK 241 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT ++ + G + + YT Sbjct: 242 LRHSFATHILESSGDLRGVQELLGHANLSTTQVYTH 277 >gi|257465111|ref|ZP_05629482.1| site-specific tyrosine recombinase XerC [Actinobacillus minor 202] gi|257450771|gb|EEV24814.1| site-specific tyrosine recombinase XerC [Actinobacillus minor 202] Length = 300 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 39/285 (13%), Positives = 87/285 (30%), Gaps = 21/285 (7%) Query: 68 PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIR 120 TL I Y ++ ++ +++ + + I Sbjct: 2 DNTLYAQIQPYWDYLRAEKQVSPHTLSNYQRQLQAVCAMLKQHQISSWQEVDASVIRWIL 61 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 S + S L ++R F + V+ E + NP L ++ PK + E + Sbjct: 62 SQSHKQGLGAKSIGVRLVALRQWFAYLVKHEQLPANPALGIKAPKVGRHLPKNVDAEQVA 121 Query: 181 QFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE 236 Q + + E + SGLR S+ + + ++ K V Sbjct: 122 QLLNTEVTTPLEIRDLAMMELMYSSGLRLSELQGLDLDRMDLATREVRLLGKGNKERIVP 181 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQ-------KMNATQFSIWFKAKATKAGV--NKSAH 287 + ++ + + +F ++ +++ + + K G+ + H Sbjct: 182 IGSKALEAIHRWLEVRMSFNPQDNAVFLNNRGGRLSHRSIQLIMEKWGRKQGLETHLHPH 241 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 +R AT + + G ++ + YT D L Sbjct: 242 KLRHSFATHMLEGSGDLRAVQELLGHSSLATTQIYTH-LDFQHLA 285 >gi|72161605|ref|YP_289262.1| site-specific tyrosine recombinase XerD [Thermobifida fusca YX] gi|71915337|gb|AAZ55239.1| tyrosine recombinase XerD [Thermobifida fusca YX] Length = 321 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 50/312 (16%), Positives = 95/312 (30%), Gaps = 40/312 (12%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHI------- 119 L + Y LA N+ S+ ++ + G D R + + Sbjct: 8 LHTAVRGYLDHLTVERGLAANTLQSYRRDLNRYLDFLTARGITDLRDVRADDVASFLRTL 67 Query: 120 -RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 R +SA + + ++R L ++A+R+ A +P V P + + T Sbjct: 68 REGDAHHRPLGANSAGRAVIAVRGLHRFALREGLTAHDPAHEVRPPALQRRLPKAITVAQ 127 Query: 179 MQQFKSFWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233 ++ + G + R E L +G R S+ V + + Sbjct: 128 VEALLAAADIGGGPRALRDRALIELLYGTGARISEVVGLDVDDVTRLRPDPHADTEVAAV 187 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKM---------------------NATQFSIW 272 G +++ + + + + Sbjct: 188 RFRGKGGKERIVPVGRYARTAVDAYLVRARPGLAAAGRGSSALFLNARGGRLTRQGAWAV 247 Query: 273 FKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT-KGADRIR 330 A A +AG+ + S H +R AT D GA + G +V + YT DR+R Sbjct: 248 LHAAAERAGLRDVSPHTLRHSFATHLIDGGADVRVVQELLGHASVTTTQVYTLVTVDRLR 307 Query: 331 LGIKNSRRISSV 342 + + V Sbjct: 308 EVYAAAHPRARV 319 >gi|256840355|ref|ZP_05545863.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256737627|gb|EEU50953.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 393 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 57/368 (15%), Positives = 120/368 (32%), Gaps = 40/368 (10%) Query: 4 SLRLPPFVTKERTRHGKIIYY---FRKGHGRRIRLPYPHESTFIPA-------------- 46 L+ P + +++ G I Y ++KG ++ L A Sbjct: 9 RLKEPVRIREKKIAGGNISLYLDIYQKGLRKKETLKLYLVPEINAATKLQNANTRKLAEQ 68 Query: 47 --YMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS-AHWGSLAVNSRISFESYFDQII 103 L + +K TL + ++ K A ++ ++ + + DQ + Sbjct: 69 IKAQRILDIQREGLVDWDKVKKSRMTLTKWMDDFVKYNAELSESSMKTKRNTHARIDQYL 128 Query: 104 RKSGD--FDYRKITTKHIR----------SGVESRKHTPSSAIQFLTSMRVLFKWAVRQE 151 G F + + + + ++ + ++ F+ AVR Sbjct: 129 LHIGKPEFLLKDVDKEFCKGFITFLKTCTYNDGKKQLSTTTCRMFVNYFGSSLAKAVRDG 188 Query: 152 YVAINPC---LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208 + NP + E+P+++ T E++++ + + AF F ++GLR SD Sbjct: 189 LIEQNPFLLLEAKEKPQKRVAEREFLTIEEIKKVMNTPCRYELVKKAFLFSCFTGLRYSD 248 Query: 209 SCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF---MKLLAMTPIGKETFFINNDKQKMN 265 + + + + P +E + Sbjct: 249 MKALNWSEIHKAADGKTEYIDHIQVKTKDRVTIPLSEETKKWMPKREEGIDNIFHNLTIT 308 Query: 266 ATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 +T + K AG+ K H R +AT+ GA+ + + G K++ E Y Sbjct: 309 STTVEVVLKEWMEAAGITKHITYHCSRHTAATMLLTLGASIYVVSKILGHKSIKMTEIYA 368 Query: 324 KGADRIRL 331 K D+ +L Sbjct: 369 KIVDKKKL 376 >gi|317129216|ref|YP_004095498.1| tyrosine recombinase XerC [Bacillus cellulosilyticus DSM 2522] gi|315474164|gb|ADU30767.1| tyrosine recombinase XerC [Bacillus cellulosilyticus DSM 2522] Length = 297 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 44/286 (15%), Positives = 89/286 (31%), Gaps = 26/286 (9%) Query: 71 LKWLISEYRKSAHWGSLAVN-SRISFESYFDQIIRKSGDFDYR---KITTKHIRSGVESR 126 + LI ++ A N + +++++ + ++ IR + Sbjct: 2 VSELIKQFITYLQLEKQASNHTTLNYKNDILDFYAFTKSLKISTFVDVSYNDIRDYLTVL 61 Query: 127 KHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----M 179 S + ++++R + + +R+E V NP SV PK + +E+ Sbjct: 62 HQKAYSRNSIARKISALRSFYSFLMREEIVKENPFQSVTTPKGGKRLPTFFFEEELAKLF 121 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG-VQHLQNNIFSIKTQKTGTIITVELP 238 + G + E L +G+R S+ + + + K V + Sbjct: 122 DSTDTSKPLGKRNNAILELLYATGIRVSECVSLNLMDYDNDIGTLFVRGKGKKERYVPVG 181 Query: 239 DGFMKLLAMTPIGKETF-----------FINNDKQKMNATQFSIWFKAKATKAGV--NKS 285 M+ L F+N +++ A S Sbjct: 182 SFAMEALNDYLNNGRPHLRSNQTNKDALFVNYRGGRLSDRSIRTILNNIVRDASTASRIS 241 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330 H +R AT + GA + G + + YT DR+R Sbjct: 242 PHVLRHTFATHMLNEGADLRTVQELLGHSRLSSTQVYTHVTKDRLR 287 >gi|294646923|ref|ZP_06724544.1| integron integrase [Bacteroides ovatus SD CC 2a] gi|294810786|ref|ZP_06769432.1| integron integrase [Bacteroides xylanisolvens SD CC 1b] gi|292637868|gb|EFF56265.1| integron integrase [Bacteroides ovatus SD CC 2a] gi|294441974|gb|EFG10795.1| integron integrase [Bacteroides xylanisolvens SD CC 1b] Length = 368 Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats. Identities = 30/264 (11%), Positives = 79/264 (29%), Gaps = 15/264 (5%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSA 133 Y + + ++ ++ +YF + + ++ I + +K + S Sbjct: 96 YLELLEQKRYSPSTVKTYRAYFSDFMEYHEGRNIDRLKVPDINKYILYLVNEKKISVSQQ 155 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193 + +++ + + + + R K +K ++++ + Sbjct: 156 NMRINAIKF---YYEQVKGGKRQYYGGITRAKEYKSLPEVLSKNEIKRIL-AQISNIKHH 211 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252 + +GLR S+ Q + + S++ L ++ L Sbjct: 212 CMISLVYSAGLRRSELLNLTPQDINSETMSVRIMGKGKKCRYSLLSPKLLEELRHYFREY 271 Query: 253 ETFFINN----DKQKMNATQFSIWFKAKATKAGVNKSAH--GVRKFSATISADAGATAHE 306 ++ +A+ K A +AG+ H +R AT + G H Sbjct: 272 RPQKWLFEGETPGEQYSASALVKVLKEAAHRAGIKHRVHVHMLRHSFATHLLEQGTDLHT 331 Query: 307 LMATYGWKTVDQAETYTKGADRIR 330 + G + Y + + Sbjct: 332 IQELLGHNDIKTTTIYLHVSSAHK 355 >gi|149200277|ref|ZP_01877298.1| integrase/recombinase [Lentisphaera araneosa HTCC2155] gi|149136641|gb|EDM25073.1| integrase/recombinase [Lentisphaera araneosa HTCC2155] Length = 318 Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats. Identities = 45/301 (14%), Positives = 98/301 (32%), Gaps = 42/301 (13%) Query: 77 EYRKSAHWGSLAVNSRISFESYF-DQIIRKSGD-------FDYRKITTKHIRSGVESRKH 128 +Y K+ + +++++ ++ + I + GD +++I + + S + Sbjct: 15 KYLKTE--KNFSLHTQKAYFFDIVEFITQTWGDEAIEAQSLAWKQIDKNAAKGYIFSLQE 72 Query: 129 TPSSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT---------- 175 + S L +S+R L+ + R+E + NP ++ K+ + Sbjct: 73 SKISKNTLLRKCSSLRSLYNFFQREELQSTNPFQDIKAAKKDKSLPLILSREDISTLLSS 132 Query: 176 ---KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 ++ K+ S+ E + GLR ++ + ++K G Sbjct: 133 PAPYWAQKKGKNNDFMASRDAAILEIIYSGGLRIQEALDINFDQINLEESTLKIFGKGKK 192 Query: 233 -------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279 + L T F D ++++A KA Sbjct: 193 QRTAYLGNPAKQALEQYFACRKNAELNWTSANDPVFINLKDLKRLSARSIQRNLKAYLQS 252 Query: 280 AGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNS 336 + + H +R AT DAGA + G + + + YT DR+ + Sbjct: 253 CQLPPDITPHKLRHSFATHLLDAGADLRSVQELLGHENLSTTQIYTHISTDRLLQAYDQA 312 Query: 337 R 337 Sbjct: 313 H 313 >gi|301058430|ref|ZP_07199451.1| site-specific recombinase, phage integrase family [delta proteobacterium NaphS2] gi|300447486|gb|EFK11230.1| site-specific recombinase, phage integrase family [delta proteobacterium NaphS2] Length = 399 Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats. Identities = 53/319 (16%), Positives = 95/319 (29%), Gaps = 12/319 (3%) Query: 17 RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGS-TPKREYINSPRKKPTTLKWLI 75 + GK Y F R R + + + A T P + L+ I Sbjct: 61 KTGKWKYKFEFQKKRYKREGFKTQKEALLAEAGKRTLVNAPSLGLMELEEPPSGYLEETI 120 Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP-SSAI 134 Y K + N+ ++ GD I I + +E R + S+ Sbjct: 121 LNYLKYCKKRKMRSNTIRQKYFVLSNFVKSIGDKPVELIRKSDIEAYLELRIDSGKSTFN 180 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194 + L +R +F W +E + NP +E+ E D+ K + L Sbjct: 181 RDLRDIRAMFNWYYGREGIFHNPANDIEKIGEDVELRYVPPFSDIVAVKLMATRDEGDFL 240 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM------T 248 E + Y+GLR ++ R + S K + Sbjct: 241 --ETIFYAGLRRIEAIRLLWSR-DVDFESRTLISWTRKRKNGTLTPKPKAITKTLYTALK 297 Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHEL 307 + +++ + + + K KAGV + H +R A+I + Sbjct: 298 NRYERRNKLDDRVFQFSVEYLNDMMKRLCEKAGVQHFGLHALRHLGASILLSENVPLPAV 357 Query: 308 MATYGWKTVDQAETYTKGA 326 G + + TY Sbjct: 358 QEYLGHERITTTNTYAHTL 376 >gi|42526718|ref|NP_971816.1| phage integrase family site specific recombinase [Treponema denticola ATCC 35405] gi|81412439|sp|Q73NE4|XERC_TREDE RecName: Full=Tyrosine recombinase xerC gi|41817033|gb|AAS11727.1| site-specific recombinase, phage integrase family [Treponema denticola ATCC 35405] Length = 305 Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats. Identities = 46/286 (16%), Positives = 89/286 (31%), Gaps = 34/286 (11%) Query: 73 WLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESRKHT 129 + Y SA + S+++ + D ++ IR + Sbjct: 3 EVFESYLTYSAGVRQFTKATIDSYKNDLIIFEEWLKELDLNIFELKASDIRIFIAELADK 62 Query: 130 ---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 P+S + ++++R +K+A+R +NP SV K + + Q+F Sbjct: 63 KIAPASINRMMSTLRGFYKYALRFNLTKMNPISSVRNLKLAQKLPVFMFPKQAQEFCRLP 122 Query: 187 SEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDG 240 S ++ F L +G R S+ ++ L ++I K V + Sbjct: 123 SNAGILWETRDAALFASLYSTGCRVSELAGLDIKDLDKTLSYAIVFGKGKKERKVFFAEF 182 Query: 241 FMKLLAMT--------------------PIGKETFFINNDKQKMNATQFSIWFKAKATKA 280 + L ++T FIN Q + + + Sbjct: 183 AKEYLREYLKERSDLVEKFKGQVQKDGKGKIRDTLFINQKAQPLTSRGIRYIIDRYVELS 242 Query: 281 G--VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + S H R A+ GA + G ++V + YT Sbjct: 243 PELKHLSPHAFRHSFASTLITRGADIRVVQELLGHESVSTTQRYTH 288 >gi|256751764|ref|ZP_05492637.1| integrase family protein [Thermoanaerobacter ethanolicus CCSD1] gi|256749292|gb|EEU62323.1| integrase family protein [Thermoanaerobacter ethanolicus CCSD1] Length = 307 Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats. Identities = 40/280 (14%), Positives = 87/280 (31%), Gaps = 28/280 (10%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRK 127 LK+ I ++ + + +L+ S ++ + G + + IT HI+S K Sbjct: 3 LKFAIQDFIEDRKFKNLSPVSINGYQRDLQEFYNWITQQGILNIQDITPHHIKSYFMHLK 62 Query: 128 HT----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-------IRPWTK 176 + P + LT++R F + V+++ + P ++ + Sbjct: 63 NEKNNNPVTLNHKLTNLRAFFNYMVQEKILKETPVKIEKQKTDVKIEAFTDEQVYQMLRY 122 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITV 235 + + + L L +G+R S+ + + N K+ T+ Sbjct: 123 FRKLKQREKTFYAYRNYLIILTFLGTGIRLSEIVNLKWRDIDLINDKITVYGKSRKQRTI 182 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAG---V 282 L + + + IN + + F+ G V Sbjct: 183 PLQERLREEFKEYYAFCKKNNINFTDDDYVFTDIRKKQLSKNAIHLVFRRLKKVMGWKNV 242 Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 + H R A +G L G ++++ Y Sbjct: 243 KLAPHTFRHTFAKNWILSGGDVFSLQRVLGHQSIEMTNRY 282 >gi|86747397|ref|YP_483893.1| site-specific tyrosine recombinase XerC [Rhodopseudomonas palustris HaA2] gi|86570425|gb|ABD04982.1| tyrosine recombinase XerC subunit [Rhodopseudomonas palustris HaA2] Length = 351 Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats. Identities = 42/314 (13%), Positives = 90/314 (28%), Gaps = 35/314 (11%) Query: 51 LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF 109 + S P I+ P L + + L+ + ++ Q + Sbjct: 29 MAKSQPMPPPIDLPCAAAD-LNAEFTRWLSHLRAERRLSGKTLEAYARDLRQFLFFLAGH 87 Query: 110 --------DYRKITTKHIRSGVESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158 + ++ T +R+ + +R+ S ++ L +R ++ R+ ++ Sbjct: 88 WGGEVTLGRFARLETTDVRAFMAARRGDAIAGRSLMRALAGLRSFGRFLEREGKGSVGAL 147 Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR---------LAFEFLLYSGLRCSDS 209 +V PK K +P ++ + R L SGLR S++ Sbjct: 148 SAVRAPKIKKSLPKPIQIAAAKRLADADERAGEDRETWVLVRDAAVMALLYGSGLRISEA 207 Query: 210 CRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ------- 262 + + G + +LA + Sbjct: 208 LGLKRRDVPAPGKGDTLIVLGKGNKTRMVPVLDAVLAQIADYAKACPHPLPPDGPMFVGA 267 Query: 263 ---KMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVD 317 ++ + + G+ + H +R AT G + G ++ Sbjct: 268 RGGPLSPRIIQLAMERLRGALGLPDSATPHALRHSFATHLLSRGGDLRAIQELLGHASLS 327 Query: 318 QAETYTKGADRIRL 331 + YT G D RL Sbjct: 328 TTQIYT-GIDTERL 340 >gi|13473085|ref|NP_104652.1| site-specific tyrosine recombinase XerD [Mesorhizobium loti MAFF303099] gi|34222995|sp|Q98FX8|XERD_RHILO RecName: Full=Tyrosine recombinase xerD gi|14023833|dbj|BAB50438.1| site-specific recombinase [Mesorhizobium loti MAFF303099] Length = 305 Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats. Identities = 42/305 (13%), Positives = 89/305 (29%), Gaps = 40/305 (13%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQI--IRKSGDFDYRKITTKHIRSGVESRKHTPS 131 I + + A N+ S+ + G + + R P+ Sbjct: 7 IEAFLEMMSAERGAAENTLSSYRRDLEDASSGIDGGLAGAAAADIRAYLDDIAERGFAPT 66 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF------ 185 S + L+++R FK+ + +P +++ PK+ + ++ + + Sbjct: 67 SQARKLSAIRQFFKFLYAEGLRTDDPTGTLDSPKKARPLPKTMSEAETGRLIDRAAVEAG 126 Query: 186 --------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-----------IKT 226 + E L +GLR S+ V Q + + Sbjct: 127 DAGLGYSDRLAALRLHALVEVLYATGLRVSELVGLPVTVAQRDDRFFMVRGKGDKERMVP 186 Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---N 283 + + + F +D ++ F+ K A +AG+ Sbjct: 187 LSAKARVAMRAWLAARAGVPAFADSPFLFPAASDSGYLSRQVFARDLKGLAARAGIASAK 246 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343 S H +R A+ GA + G + + YT + R+ +V Sbjct: 247 ISPHVLRHAFASHLLQNGADLRAVQQLLGHADISTTQIYTHVLEE---------RLVRLV 297 Query: 344 DSDDP 348 + P Sbjct: 298 NDHHP 302 >gi|126176181|ref|YP_001052330.1| tyrosine recombinase XerC [Shewanella baltica OS155] gi|125999386|gb|ABN63461.1| tyrosine recombinase XerC [Shewanella baltica OS155] Length = 306 Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats. Identities = 32/275 (11%), Positives = 88/275 (32%), Gaps = 20/275 (7%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRKHTP 130 Y + L+ ++ ++ ++ D + + + + + + + +P Sbjct: 19 FERYLSTE--RQLSAHTVRNYLYELNRGSDLLPDGVNLLNVSREHWQQVLAKLHRKGLSP 76 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 S L++++ ++ +R+ + +NP + PK+ + + + Sbjct: 77 RSLSLCLSAVKQWGEFLLREGVIELNPAKGLSAPKQAKPLPKNIDVDAISHLLDIEGTDP 136 Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA 246 + + E SGLR ++ + +Q ++ ++ K V + + L Sbjct: 137 LSLRDKAMMELFYSSGLRLAELAALNLSSVQYDLKEVRVLGKGNKERIVPVGRLAIAALL 196 Query: 247 MTPIGKETFFINNDK-------QKMNATQFSIWFKAKAT--KAGVNKSAHGVRKFSATIS 297 ++ ++ ++++ V H +R AT Sbjct: 197 NWLNCRKQIPCEDNALFVTEKGKRLSHRSIQARMAKWGQEQALSVRVHPHKLRHSFATHM 256 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 +A A + G + + YT D L Sbjct: 257 LEASADLRAVQELLGHANLATTQIYT-SLDFQHLA 290 >gi|257876703|ref|ZP_05656356.1| site-specific recombinase [Enterococcus casseliflavus EC20] gi|257810869|gb|EEV39689.1| site-specific recombinase [Enterococcus casseliflavus EC20] Length = 299 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 42/280 (15%), Positives = 98/280 (35%), Gaps = 26/280 (9%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIR---SGVE 124 L E+ + + ++ +++ + +++SG+ D + + +R S + Sbjct: 4 DQLQEEFFRYLIVERGYSEKTKKAYQEDMNDFFHFLKESGNEDPLAVEYRDVRVYLSYLT 63 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 R+++ +S + + S+R +++ + E V NP + K+ + R + +++M Sbjct: 64 ERRYSRNSISRKMASLRSFYQFLTKHEIVKENPFAYIHLKKKNAKLPRFFYEKEMDALFQ 123 Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-------------NIFSIKTQ 227 + + E L SGLR S+ + + + + Sbjct: 124 SVAGDEPLQQRNQALLEVLYGSGLRVSECSSLTLGAIDWESGVLLIHGKGNKDRYVPFGS 183 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KS 285 + L G +L+ E F+N+ + AT K+ ++ Sbjct: 184 YAQAAVKRYLSSGRKQLMEKQNKEHEVLFVNHLGDGITATGIEYVLNQIIRKSSLDSKIH 243 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 H +R AT + GA + G + + Y Sbjct: 244 PHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHV 283 >gi|218884315|ref|YP_002428697.1| phage integrase family protein [Desulfurococcus kamchatkensis 1221n] gi|218765931|gb|ACL11330.1| phage integrase family protein [Desulfurococcus kamchatkensis 1221n] Length = 321 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 43/288 (14%), Positives = 87/288 (30%), Gaps = 32/288 (11%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 K ++ E++ S + + ++ S + GD R +T + I + R Sbjct: 7 KEIVEEFKASLEASGASEETVKAYLSAIKDFLGFIGDKPLRDVTLRDILAWRNDR-LRNG 65 Query: 132 SAIQFLT--------------SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 + ++ ++ F+W V P RK + Sbjct: 66 FPNRKISDKEKWLVTLHYYTLFLKRFFEWLGVNIVVT---------PVRKPHASINVLSD 116 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITV 235 + + + +L L+ +GLR + V+ + + IK K G V Sbjct: 117 EEVEKLYNVARTPLDKLVLRLLVDTGLRSRELLGLRVEDVNFHSRVIKVTSAKYGKERYV 176 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKF 292 + K+L + + + K AT+AG+ H +R Sbjct: 177 VATEETFKMLDAWIRLNGLMPGDRLFN-LTYSGLYKKLKRLATRAGIAPERVRPHVLRHT 235 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK--GADRIRLGIKNSRR 338 AT + G + L G + + Y D + + + Sbjct: 236 FATRALRRGLSLPALQRLLGHSDIKTTQIYLHLSVEDLKKEYYEKMDK 283 >gi|21673437|ref|NP_661502.1| integrase/recombinase XerD [Chlorobium tepidum TLS] gi|34222899|sp|Q8KET0|XERD_CHLTE RecName: Full=Tyrosine recombinase xerD gi|21646539|gb|AAM71844.1| integrase/recombinase XerD [Chlorobium tepidum TLS] Length = 304 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 40/280 (14%), Positives = 92/280 (32%), Gaps = 26/280 (9%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRK 127 + + + + + N+R S+ + + + + + IR ++ Sbjct: 8 WRKTLETFLNYLTLERNFSGNTRASYLNDLGRYLAWLHECGVKPEEAAPGDIRKFIQELH 67 Query: 128 H---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 SS + ++++R K+ + + +NP ++ +PK T E+M Sbjct: 68 EIGLEASSIARNISAIRSFHKFLLTERLATMNPAENIHQPKLARYLPSVLTIEEMATLLD 127 Query: 185 FWSEG-------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-----I 232 + + + EFL +G+R S+ +L + ++ G+ Sbjct: 128 APLKRHPTSTFMLRDKAMLEFLYATGVRVSELLGLSRLNLHMDDGFVRVFGKGSKERLVP 187 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQ------KMNATQFSIWFKAKATKAGVNK-- 284 + + L G + ++ ++ + A AG+ K Sbjct: 188 VGQTAISWMKRYLDELRPGMMSATSHDTIFLNSRGGPLSRMAAWNIVREHAVIAGIEKPI 247 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 S H R AT + GA + G ++ + YT Sbjct: 248 SPHTFRHSFATHLLEGGADLRVVQEMLGHSSIIATQIYTH 287 >gi|323489572|ref|ZP_08094799.1| tyrosine recombinase xerC [Planococcus donghaensis MPA1U2] gi|323396703|gb|EGA89522.1| tyrosine recombinase xerC [Planococcus donghaensis MPA1U2] Length = 297 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 38/264 (14%), Positives = 79/264 (29%), Gaps = 23/264 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR---KHTPSSAIQFLT 138 + + ++ +E G D R++ H R+ V K + ++ + ++ Sbjct: 18 KNYSEHTVHHYEHDLADFFLFLNAEGVPDIREVEYIHARNYVTKLYDAKLSRTTVSRKIS 77 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFWSEGSQPRL 194 ++R F++A R+ + S+ PK++ + + +E+ + + Sbjct: 78 AIRSFFRYANREYGLDEAAFRSLYHPKKEERLPQFFYEEELAQLFKSVLGDDKLSIRNTA 137 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMTPIGKE 253 E L +G+R S+ + L + K + L Sbjct: 138 LLELLYATGMRVSECVSIRLTDLDQTMQIVKVMGKGRKERYIPYGQFAQDALEHYLEDAR 197 Query: 254 TFFINNDKQKM----------NATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAG 301 + KA VN S H +R AT + G Sbjct: 198 PKLMKKQDHDYLFVNSRGEAVTDRGIRHILSECMKKASVNSSIYPHMIRHTFATHLINNG 257 Query: 302 ATAHELMATYGWKTVDQAETYTKG 325 A + G + + YT Sbjct: 258 ADIRTVQELLGHSHLSSTQVYTHV 281 >gi|210633132|ref|ZP_03297699.1| hypothetical protein COLSTE_01612 [Collinsella stercoris DSM 13279] gi|210159286|gb|EEA90257.1| hypothetical protein COLSTE_01612 [Collinsella stercoris DSM 13279] Length = 305 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 42/292 (14%), Positives = 99/292 (33%), Gaps = 28/292 (9%) Query: 74 LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT--KHIRSGVESRKHTP 130 LI +Y + + + ++ + + R + + + +R+ + + Sbjct: 11 LIDDYIAHLSRFEGASSETVRAYTQHLEAYARWAARAGRDGLAPSTRDVRAYLSELRAAG 70 Query: 131 SSAIQ---FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +A L+S+R F+W + +P ++ PK + + + Sbjct: 71 YAARTVAAHLSSIRSFFRWLSDEGLAGADPVTAIASPKLDRPLPHVLAPDQLARLMDAPD 130 Query: 188 E----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-----IITVELP 238 G + E + +G R S+ + + + S++ G+ + Sbjct: 131 LASAGGKRDAAMLELFIATGARISELAALDLADVDVSRASVRLFGKGSKERLVPLYDRAC 190 Query: 239 DGFMKLLAMTP----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSA 286 + L + +FFI++ + M+A+ F A +AG+ + Sbjct: 191 SVCARYLEEGRGELLGRGAASSREASFFISDRGRPMSASSLRHRFDALKRRAGIPADITP 250 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337 H +R AT GA + G ++ + YT DR++ + + Sbjct: 251 HAMRHTFATELLIGGADLRSVQELLGHASLSTTQIYTHLTPDRLKSAVHQAH 302 >gi|56476505|ref|YP_158094.1| integrase/recombinase [Aromatoleum aromaticum EbN1] gi|58616507|ref|YP_195636.1| integrase [Azoarcus sp. EbN1] gi|56312548|emb|CAI07193.1| integrase/recombinase [Aromatoleum aromaticum EbN1] gi|56315969|emb|CAI10612.1| probable integrase [Aromatoleum aromaticum EbN1] Length = 309 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 43/265 (16%), Positives = 95/265 (35%), Gaps = 18/265 (6%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129 L + +LA N++ ++ R D ++ + +R+ ++RK T Sbjct: 21 LRQRMLEDMGVRNLAPNTQSAYLKQVSAYARYF-DCSPDELGPEQVRAYQVYLTQTRKLT 79 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 PS+ ++R L+K +++ + + PKR + ++E++ QF + Sbjct: 80 PSTVSVATGALRFLYKVTLKRAW----AVEEIPMPKRSFKLPVVLSREEVSQFL-ASVDH 134 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--GTIITVELPDGFMKLLAM 247 R +GLR S++ V + + ++ + V L ++ L + Sbjct: 135 LMHRTILMTAYAAGLRVSEATHLKVSDIDSQRMVLRVDQGKGRKDRYVMLSPRLLEALRV 194 Query: 248 TP----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301 F + Q + + + G+ K + H +R AT ++G Sbjct: 195 YWKSARPTLWLFPGDVPGQPITRNAVGLACQKARRACGIRKPITPHSLRHAFATHLLESG 254 Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326 + G +++ Y K A Sbjct: 255 TDVRTIQLLLGHRSLATTSRYLKVA 279 >gi|54023975|ref|YP_118217.1| site-specific tyrosine recombinase XerD [Nocardia farcinica IFM 10152] gi|54015483|dbj|BAD56853.1| putative recombinase [Nocardia farcinica IFM 10152] Length = 316 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 42/292 (14%), Positives = 86/292 (29%), Gaps = 43/292 (14%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTP 130 I Y A N+ ++ + G ++ + + + + Sbjct: 6 IDAYLDHLAVERGAARNTLGAYRRDLGRYRDFLTERGIGGLEQVREADVAAFTVALRSGG 65 Query: 131 --------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 SS + L ++R L ++A + + + +V+ P + + + + Sbjct: 66 GDHPPLAASSVARALIAVRGLHRFAAAEGMTSTDVAHAVKPPTPGRRLPKALPYDQVLRL 125 Query: 183 KSFW----------------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK- 225 G + R E L +G R S+ V L ++ Sbjct: 126 LEAAGGGPAEDGDTAAADGGPRGLRDRALLELLYSTGARISEMVGLDVDDLDTTERAVVL 185 Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETF------------FINNDKQKMNATQFSIWF 273 K G V + + + + F+N +++ Sbjct: 186 RGKGGKQRIVPIGRPALAAVDAYLVRGRPVLAAAGKGTGGALFLNVRGGRLSRQSAWQVL 245 Query: 274 KAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + A +AG+ S H +R AT D GA + G +V + YT Sbjct: 246 QTAAERAGIGAAVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYT 297 >gi|167628193|ref|YP_001678692.1| phage integrase family protein [Heliobacterium modesticaldum Ice1] gi|167590933|gb|ABZ82681.1| phage integrase family protein [Heliobacterium modesticaldum Ice1] Length = 368 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 43/366 (11%), Positives = 107/366 (29%), Gaps = 41/366 (11%) Query: 11 VTKERTRHGKIIYYFRKGHG----RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 V K+ R FR R+ + + + Y + Sbjct: 3 VYKDEKRK-TWYCAFRYKDWTGTTRQHKKRGFAKKSDAVQY--------ERDFIKKQSGG 53 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVES 125 ++ Y + L + + D +I+ D IT +R Sbjct: 54 CDMAFGSMVELYMEDCKTR-LRPTTYEGKKYLIDSKILPVFKDMPVNAITPATVRKWQNG 112 Query: 126 R-----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-IRPWTKEDM 179 ++P+ + +F +A R + NP +K ++ WT ++ Sbjct: 113 LLDDESDYSPTYLKTINNQLSAIFNYARRYYGLQTNPAAVCGSIGKKNAESMQFWTTDEF 172 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG----------------VQHLQNNIFS 223 + F + S+ F L ++G+R + + N Sbjct: 173 RLFAAAISDKPASYAIFNTLFWTGMRSGELLALTLNDIDFESKKISITKSYARVGNEDVI 232 Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 + + + + +++L + ++ + +GV Sbjct: 233 SPPKTPKSRRVITASEFLLEILKDYAGRLVDYEPSDRLFDYTKHFLASEMARGCKLSGVK 292 Query: 284 K-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISS 341 K H +R A++ + G + + G ++V+ +TY + + ++ + Sbjct: 293 KIRIHDIRHSHASLLIELGFSPLLISERLGHESVETTLQTYAHLYPNKH--GEVADKLDA 350 Query: 342 VVDSDD 347 + ++ Sbjct: 351 LNSPEN 356 >gi|167561800|ref|ZP_02354716.1| site-specific tyrosine recombinase XerD [Burkholderia oklahomensis EO147] Length = 325 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 44/275 (16%), Positives = 85/275 (30%), Gaps = 26/275 (9%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS----GVESRKHTPSSA 133 + + L+ N+ ++ + + + +S+ Sbjct: 45 WLEH----GLSRNTLDAYRRDLQLFAQWLAAQHAENVDHANEAMLTGYIAARSDGKATSS 100 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--- 190 + L+ R + WAVR+ A++P L + K+ ++ ++ + + Sbjct: 101 NRRLSVFRRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALLAAPDVDTPLG 160 Query: 191 -QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT 248 + R E + SGLR S+ + N ++ V + + Sbjct: 161 LRDRTMLELMYASGLRVSELVTVKSVEVGLNEGVVRVTGKGSKERLVPFGEVAHGWIERY 220 Query: 249 PIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296 F+ M QF K A +A V + S H +R AT Sbjct: 221 LRDGRPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRAHLSPHTLRHAFATH 280 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 + GA + G + + YT A R RL Sbjct: 281 LLNHGADLRVVQLLLGHSDISTTQIYTHVA-RERL 314 >gi|159046171|ref|YP_001541843.1| integrase family protein [Dinoroseobacter shibae DFL 12] gi|159046203|ref|YP_001541875.1| integrase family protein [Dinoroseobacter shibae DFL 12] gi|157913930|gb|ABV95362.1| phage integrase [Dinoroseobacter shibae DFL 12] gi|157913962|gb|ABV95394.1| phage integrase [Dinoroseobacter shibae DFL 12] Length = 290 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 41/265 (15%), Positives = 78/265 (29%), Gaps = 17/265 (6%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 L + + L ++ + G T + +R+ K A Sbjct: 9 LRRRFIEDMRIKGLQPKTQTMYLRAMRDFTGFLGHSP-DSATPEELRAFQLDMKEKGVGA 67 Query: 134 ---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-EG 189 LT + + + + + + + + E++ + G Sbjct: 68 PTFNNRLTVLSFFYATTCPRPEMKRHM----RYQRAAKKIPVVLSAEEVTRILEAAPGPG 123 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--GTIITVELPDGFMKLLAM 247 + R AF GLR S+ + + ++ I+ + V L + LL Sbjct: 124 LRYRAAFSVAYGGGLRASEVTHLKIGDIDSDRMLIRIDQGKGRKDRHVMLSPSLLVLLRD 183 Query: 248 TPIGK----ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301 F N ++ QF+ F A + K S H +R AT + G Sbjct: 184 YYREARPAGWLFPGRNRVDPISTRQFNRAFGVACDFAEIKKRVSPHTLRHSFATHLLEGG 243 Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326 + G ++ YTK A Sbjct: 244 TDIRVIQVLLGHAKLETTTIYTKVA 268 >gi|19746280|ref|NP_607416.1| integrase [Streptococcus pyogenes MGAS8232] gi|19748468|gb|AAL97915.1| integrase [Streptococcus pyogenes MGAS8232] Length = 362 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 49/345 (14%), Positives = 102/345 (29%), Gaps = 33/345 (9%) Query: 11 VTKERTRHGKIIY----YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 + + +G+ Y Y +G+R + T +A + ++ P+ Sbjct: 3 IKSYKKENGETAYKFLLYAGYVNGKRKYIRREGFKT----KQAARETLISLQAELDKPKS 58 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 T L ++ K + + I+ K I I+ E Sbjct: 59 -SMTFGALTDQWLKEYEKTVQGSTYLKTERNINKHILPKLDKVKIGDINPLLIQRLTEEW 117 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-----IRPWTKEDMQQ 181 + + L +R + AVR Y+ NP L + PK K + + Sbjct: 118 CNDLKYGGKILGLVRNILNLAVRYGYINNNPALPITPPKIKRKRKMNNNFYTLDQLKQFL 177 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--------------FSIKTQ 227 ++ + F L ++G+R + L N T+ Sbjct: 178 ELVEKTDNIEKIALFRLLAFTGIRKGELLALTWDDLNGNTLSINKAVTRTQVGLEIDVTK 237 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ---KMNATQFSIWFKAKATKAGVNK 284 + + L D +++L T + + M + W + + Sbjct: 238 TKSSDRLISLDDETLEILQELHETFPTSTLMFQSESGGIMTPSLPRKWLLQIIKGTDLPQ 297 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGAD 327 + HG R A++ ++G + ++ G + YT Sbjct: 298 ITIHGFRHTHASLLFESGLSLKQVQHRLGHGDLQTTMNVYTHITQ 342 >gi|170703226|ref|ZP_02894029.1| tyrosine recombinase XerC [Burkholderia ambifaria IOP40-10] gi|170131859|gb|EDT00384.1| tyrosine recombinase XerC [Burkholderia ambifaria IOP40-10] Length = 306 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 43/288 (14%), Positives = 88/288 (30%), Gaps = 31/288 (10%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTP 130 I+ Y + L+ ++ ++ D++ + + +T +R + + + Sbjct: 6 IAAYLSNLKHVRQLSEHTLRAYTHELDELKKLAAGRPLDTLTAVDMRGAVARAHAGGLSA 65 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 S L++ R ++W ++ + NP +V PKR + + +D G+ Sbjct: 66 RSIAHRLSAWRAFYRWLAQRIEMPANPVAAVRAPKRPKTLPKALSVDDASALMDAPLAGT 125 Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------GTIIT 234 + E SGLR ++ V + Q + + Sbjct: 126 TEGIRDHAILELFYSSGLRLAELIGLDVMYTQADGYRSAGWLDLDEAEVTVRGKGNKERK 185 Query: 235 VELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--K 284 V + + L F++ +M K A AG+ Sbjct: 186 VPVGRKAIDALNAWLAVRGEFVKHDPHPLFVSVRGNRMAPGVVRERVKRAALTAGIPANV 245 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R AT + + G +V + YT D L Sbjct: 246 HPHVLRHSFATHVLQSSGDLRAVQELLGHASVSATQVYT-SLDFQHLA 292 >gi|222529381|ref|YP_002573263.1| site-specific tyrosine recombinase XerC [Caldicellulosiruptor bescii DSM 6725] gi|222456228|gb|ACM60490.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725] Length = 328 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 42/287 (14%), Positives = 89/287 (31%), Gaps = 45/287 (15%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDY-------------------------RKITTKHI 119 + + N+ + +R D + +T ++ Sbjct: 21 KNKSPNTIKEYYYDLRTFLRYLKAKDLNMLSQIEKIEDLENIDVSNFEIEKLKTLTLSNL 80 Query: 120 RSGVESRKHT----PSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPW 174 P + + + S+R FK+ + + + NP +E PK R Sbjct: 81 YEYFSFLATRFNNGPYARARKVASIRSFFKYLYSKAKLIPDNPAKDLESPKLGKRNPRYL 140 Query: 175 TKEDMQQFKSFWS--EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 T + ++ S + L GLR S+ + +++++ I + Sbjct: 141 TLNESKKLLSAIDGENKERDFAIITLFLNCGLRLSELVNINLSDIKDDMLRIVGKGN-KE 199 Query: 233 ITVELPDGFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGV-- 282 + L + + T F++ K++++ + AG+ Sbjct: 200 RIIYLNKACKDAIENYLKVRPTEGVKDKDALFLSERKKRISRRTVQYIVEKYVKMAGINQ 259 Query: 283 -NKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD 327 SAH +R +AT+ G L G +++ E YT D Sbjct: 260 KKISAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVND 306 >gi|296136669|ref|YP_003643911.1| integrase family protein [Thiomonas intermedia K12] gi|295796791|gb|ADG31581.1| integrase family protein [Thiomonas intermedia K12] Length = 336 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 47/303 (15%), Positives = 96/303 (31%), Gaps = 48/303 (15%) Query: 70 TLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK- 127 TL+ L ++Y A LA + +++ D +++++ +I + HIR Sbjct: 13 TLRQLAADYLAHAQTERRLAEGTLVNYRRDLDDLLQRAETLGAAQIESVHIRRWAAQLHA 72 Query: 128 --HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT---------- 175 +P + L++ R F+W R +VA NP V PK + + Sbjct: 73 GGMSPRAIAARLSAWRSFFRWMGRLGFVAANPVQDVRAPKAAKPLPKALSVDQAVALAAY 132 Query: 176 -----------KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCR--------AGVQH 216 Q + F + ++ E L GLR S+ A Sbjct: 133 SPQKSTPAARPHRRPHQAEPFATRSARVHAIAELLYSCGLRVSELTGLDVRASKTARGWI 192 Query: 217 LQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN-------------DKQK 263 + + T K +V + + L + + + Sbjct: 193 DWDAAEATVTGKGNKRRSVPIGRPALLALRQWLEQRPALLRPDADADAQVALFLGARGAR 252 Query: 264 MNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321 + + + + A AG++ H +R A+ + + G ++ + Sbjct: 253 LTPQRVWLELREHARAAGLDARVHPHMLRHSFASHVLQSSGDLRAVQELLGHSSIATTQV 312 Query: 322 YTK 324 YT+ Sbjct: 313 YTR 315 >gi|237725482|ref|ZP_04555963.1| integrase [Bacteroides sp. D4] gi|229436169|gb|EEO46246.1| integrase [Bacteroides dorei 5_1_36/D4] Length = 383 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 55/372 (14%), Positives = 115/372 (30%), Gaps = 39/372 (10%) Query: 4 SLRLPPFVTKERTRHGKIIYY---FRKGHGRRIRLPYPHESTFIPA-------------- 46 + P + + ++G Y +R G L PA Sbjct: 9 KAKEPVRIRFKELQNGNKSIYLDIYRNGKRTYEFLKLYIVPEIDPASRAMNQHNMALANK 68 Query: 47 --YMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR 104 + + ++ N+ + L L+ Y + +S S + Sbjct: 69 IKADRIIELTNSEKGVSNATLRGRIKLSELLDLYARWLEDNG-KKSSIRGVNSIRKATFQ 127 Query: 105 KSGDFDYRKITTKHIRSGVESRKH----------TPSSAIQFLTSMRVLFKWAVRQEYVA 154 GD R + + + + ++ + ++A ++T + + WAVR +Y++ Sbjct: 128 FRGDVPIRMLDKDYCMAFMNFLRNDYKARTNRTISMTTATGYVTVLSAMLNWAVRNDYLS 187 Query: 155 INPCLSVE--RPKRKTEGIRPWTKEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSC 210 NP + + E R + + D + ++P + AF F Y LR SD Sbjct: 188 ENPFTHIAAADRIHRPESKREFLQIDELKKLIATECPTRPAVKQAFLFSCYCALRISDVI 247 Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVELPDG-FMKLLAMTPIGKETFFINNDKQKMNATQF 269 + + + + + + P + + + ++ Sbjct: 248 GLTWGDIHKDGDQWRVFTVMEKTNDPIYLPLSKQAMKWLPERGDAKDEDKVFDLPSESRI 307 Query: 270 SIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 I A AG+NK H R AT+ + G K + + Y K D Sbjct: 308 CIILDKWAKAAGINKHVTYHVSRHTFATMMLTLDVDIYTTSKLLGHKNISTTQIYAKIID 367 Query: 328 RIRLGIKNSRRI 339 + + + R+ Sbjct: 368 QKK--DEAVNRV 377 >gi|228956754|ref|ZP_04118540.1| Prophage LambdaBa04, site-specific recombinase, phage integrase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228802942|gb|EEM49774.1| Prophage LambdaBa04, site-specific recombinase, phage integrase [Bacillus thuringiensis serovar pakistani str. T13001] Length = 374 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 51/352 (14%), Positives = 105/352 (29%), Gaps = 42/352 (11%) Query: 15 RTRHGKIIYYFRKGH----GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 R R K + G G+R + T A A + + K T Sbjct: 6 RKRGEKWSFTIDIGRDPLTGKRKQKTVSGFKTKKEA-ERACNELIHQFNTGSLVDDKNLT 64 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH- 128 L + E+ ++ + ++ I++ + +II G + + H + V+S Sbjct: 65 LSEYLQEWLENTAKQRVRDSTFINYRRAVNSRIIPVVGSHKLKDLKPLHGQRFVKSLIDE 124 Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-SF 185 +P ++ + AV+ E + NP VE P+ + W+ E+ + F Sbjct: 125 ELSPKYIEYIFIVLKGALEDAVKWELLYKNPFEHVEIPRPRKVVNNTWSIEETKIFLTYA 184 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-----------------NNIFSIKTQK 228 + F L +G+R + +++ F+ Sbjct: 185 KFDNPIYYHLFLLALNTGMRRGELLGLKWKNVDLIDGKVSVTETLIYDELGFRFTEPKTS 244 Query: 229 TGTIITVELPDGFMK-------------LLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275 + + + + F D + + + F+ Sbjct: 245 GSKRLISIDQSLCKELKSYKAKQNEFKLAIGKAYEDNDLVFSREDGKPIYPRTLTTVFER 304 Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325 A V K H +R AT+ G + G ++ +TY+ Sbjct: 305 FIKTAQVPKIRFHDLRHTHATLLLKLGINPKVVSERLGHNSIKTTLDTYSHV 356 >gi|330836614|ref|YP_004411255.1| Tyrosine recombinase xerC [Spirochaeta coccoides DSM 17374] gi|329748517|gb|AEC01873.1| Tyrosine recombinase xerC [Spirochaeta coccoides DSM 17374] Length = 310 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 40/298 (13%), Positives = 83/298 (27%), Gaps = 35/298 (11%) Query: 73 WLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS-------GDFDYRKITTKHIRSGVE 124 + EY L+ ++ ++ D I + + Sbjct: 4 QVFEEYCDYIRNVKGLSAHTEKAYRHDLFVFGEFLEKFSISVHDVSPSDIRSFLVWLPER 63 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + +P + + +++ + + VR+ + NP + K + ++ + Sbjct: 64 RKDFSPGTVQRLKSTINGFYTYVVRRGKIEKNPVALISLRSASRRLPTVLEKSETERLLN 123 Query: 185 FWSEG---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDG 240 + L L +G R S+ V L+ I K G V L Sbjct: 124 LPWNDFSSLRDVLILNLLYSTGCRRSELLAIDVDDLETGQERILIHGKGGRERYVFLTPR 183 Query: 241 FMKLLAMT--------------------PIGKETFFINNDKQKMNATQFSIWFKAKATKA 280 KLL ++++ + F + Sbjct: 184 VTKLLGKYLSERKELLSRLEPAEKEGADWNALLLSNGRRKGKRLSTGIITSIFGKYKREL 243 Query: 281 GVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKN 335 ++K + H +R AT D A + G + + YT A+R+R Sbjct: 244 EIHKAFTPHVLRHTFATHLLDNDAGIRTVQELLGHVNLSTTQIYTHVSAERLRKVYDA 301 >gi|317508416|ref|ZP_07966086.1| phage integrase [Segniliparus rugosus ATCC BAA-974] gi|316253263|gb|EFV12663.1| phage integrase [Segniliparus rugosus ATCC BAA-974] Length = 308 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 40/300 (13%), Positives = 90/300 (30%), Gaps = 33/300 (11%) Query: 65 RKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQI-----------IRKSGDFDYR 112 K ++ + ++Y + + + N+ ++ G Sbjct: 3 TKPEPSISEVFAQYERHLRFERGRSPNTVRAYLGDLRAYFGPARDETAPARDVLGAVTIA 62 Query: 113 KITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 + S + + + ++ + + M+ F+WAVR A +P + + PK + Sbjct: 63 DLR--GWLSEMTAEGASRATLARRASGMKTFFEWAVRGGLAAHDPTVRLTTPKLRKALPH 120 Query: 173 PWTKEDMQQFKSFWSEGS------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIK 225 K+ +Q + S + +L E L +G+R + C V + + Sbjct: 121 VLRKDQAEQALTSAPAPSDGALLLRDQLVLELLYGTGMRVGELCGLDVDDVDQGRRLATV 180 Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK-----------MNATQFSIWFK 274 K V ++ T + + Sbjct: 181 LGKGDKQRVVPFGAKASDAISAWLRDGRPKLAGPRSGAALLLGARGGRLDQRTARRVVHE 240 Query: 275 AKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 A + G+ HG+R +AT + GA + G ++ + YT + + Sbjct: 241 RVAREPGLPDLGPHGLRHSAATHLLEGGADLRVVQEILGHSSLATTQIYTHVSVERIRAV 300 >gi|217964580|ref|YP_002350258.1| tyrosine recombinase XerC [Listeria monocytogenes HCC23] gi|254799346|sp|B8DG54|XERC_LISMH RecName: Full=Tyrosine recombinase xerC gi|217333850|gb|ACK39644.1| tyrosine recombinase XerC [Listeria monocytogenes HCC23] gi|307570856|emb|CAR84035.1| tyrosine integrase/recombinase [Listeria monocytogenes L99] Length = 300 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 38/284 (13%), Positives = 90/284 (31%), Gaps = 27/284 (9%) Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHIR 120 + L+ +Y S + +VN+ ++E+ R + + + Sbjct: 3 QEGKLEQQFLDYLHSE--RNYSVNTSTAYENDLLDFRRFLNEQAIETYQQVTFLDVRIYL 60 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + ++ + + ++ + ++S+R + + +R+ +A NP V K + + + E+M+ Sbjct: 61 TELKQKSFSRTTVARKISSLRSFYTFLLRENVIAENPFTYVSHAKNQLRLPKFFYSEEME 120 Query: 181 QFKSFWSEG-----SQPRLAFEFLLYSGLRCSDSCRAG-VQHLQNNIFSIKTQKTGTIIT 234 E + R+ E L +G+R S+ + + K Sbjct: 121 ALFQVVYEDNETLTLRDRVLLEVLYGTGIRVSECAGILLPDLDTSYQAILIRGKGNKERY 180 Query: 235 VELPDGFMKLLAMTPIGKETFFI-----------NNDKQKMNATQFSIWFKAKATKAGV- 282 V + + N+ + +KA + Sbjct: 181 VPFGVYAEDAITDYLPKRTELMTRYKKSHDALLVNHYGDPLTTRGIRYCLTKIISKASLT 240 Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 H +R AT + GA + G ++ + YT Sbjct: 241 RKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLASTQIYTHV 284 >gi|326387724|ref|ZP_08209330.1| phage integrase [Novosphingobium nitrogenifigens DSM 19370] gi|326207770|gb|EGD58581.1| phage integrase [Novosphingobium nitrogenifigens DSM 19370] Length = 300 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 43/293 (14%), Positives = 89/293 (30%), Gaps = 27/293 (9%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 ++ + A N+ ++ + GD R G P+ Sbjct: 9 EAVTAFLAMLSAERGAAANTLAAYRRDLAGAAQVLGDLALAD-RGALARLGEVWADLAPA 67 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-- 189 S + +++R + + V + +P ++ R + + R ++ S Sbjct: 68 SLARKASALRQFYAFLVEEGLREDDPGDALPRVRARRPLPRLLDHGEIGALFSLAEADAA 127 Query: 190 ------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-----QKTGTIITVELP 238 + E L SGLR ++ + + + + Q+ + Sbjct: 128 EGDPAALRLLALVELLYGSGLRATELVSLPLVAVPRDAPFLAITGKGGQQRLVPVGERAG 187 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSAT 295 L + P G F + + + + A +AG++ S H +R AT Sbjct: 188 AALRDWLRVRPAGGRYVFPSPRGGHLTRVRLFQLLRDLALRAGLDPEKVSPHVLRHAFAT 247 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 + GA L G + + YT R+ S+V+ P Sbjct: 248 HLLEGGADLRVLQTLLGHADIATTQIYTHVDG---------ARLVSLVNQRHP 291 >gi|255003412|ref|ZP_05278376.1| integrase/recombinase ripx (xerC) [Anaplasma marginale str. Puerto Rico] Length = 312 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 31/272 (11%), Positives = 82/272 (30%), Gaps = 30/272 (11%) Query: 82 AHWGSLAVNSRISFESYFDQIIRKSGDFD---------YRKITTKHIRSGVESRKHTP-- 130 + N+ ++E R +++ + RS + R Sbjct: 18 REERRYSPNTVAAYERDIMDFYRSVCGEPCERSVSLQEVQELRSAEFRSWLADRFKQGKQ 77 Query: 131 -SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---- 185 +S + ++ +R F++ + + + ++ +P + + + M++ Sbjct: 78 SASNARAISVVRSFFRYLHHKCGMKSSVVFNISKPIVRRSLPKVLEEPQMRKVMEEPEDL 137 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 + L GLR S++ L+ + K + + ++ Sbjct: 138 HWTHRRDLAVSALLYGCGLRISEAVNIKFCDLRQDELR-VLGKGSKERVIPILPWVRCII 196 Query: 246 AMTPIGKETFFINN-----------DKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKF 292 ++ +++ T F+ K + G+ ++ H +R Sbjct: 197 DEYVASCPHQRVHGASSTEYVFVGLRGGRLSRTYFAYRMKGLRRRIGLPETTTPHTLRHS 256 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324 AT GA + G ++ + YT Sbjct: 257 FATHLFLEGADIRVVQELLGHASLATTQVYTH 288 >gi|327188713|gb|EGE55912.1| tyrosine site-specific integrase/recombinase protein [Rhizobium etli CNPAF512] Length = 317 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 44/290 (15%), Positives = 83/290 (28%), Gaps = 35/290 (12%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRKH 128 + + + A N+ S+E D I + + S+ Sbjct: 9 VESFLEMMSAERGAAANTLQSYERDLDDIRSFLNGRSIRLTEAASADLSAYLASLASQGF 68 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 PSS + L +MR +K+ + +P ++ PK+ + E++ + S Sbjct: 69 KPSSQARRLAAMRQFYKFLYAEGIRTDDPTGVLDAPKKGRPLPKTMGVEEVGRLLSQAQT 128 Query: 189 GSQP-----------RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVE 236 + E L +G+R S+ L + K V Sbjct: 129 EADDPAPGQLQRLRMLALLELLYATGMRVSELVSLPAGVLDQEGRFLMIRGKGNKERLVP 188 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNA--------------TQFSIWFKAKATKAGV 282 L +K L + + + F+ K A +AG+ Sbjct: 189 LSQSAIKALKSYGRLLAAENAAAKEPQESPFLFSAASKEGYLPRQVFARDLKNLAIRAGL 248 Query: 283 N---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 S H +R A+ GA + G + + YT + Sbjct: 249 TPSLISPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEER 298 >gi|313682300|ref|YP_004060038.1| tyrosine recombinase xerd subunit [Sulfuricurvum kujiense DSM 16994] gi|313155160|gb|ADR33838.1| tyrosine recombinase XerD subunit [Sulfuricurvum kujiense DSM 16994] Length = 273 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 35/264 (13%), Positives = 77/264 (29%), Gaps = 19/264 (7%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132 EY L+ + ++ +I ++ I + + + + + + Sbjct: 6 EAFIEYITVIKA--LSPRTIEAYSRDLGEI-EQNAQKALVDIDSNTVFQILGTLSNK-RT 61 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----QFKSFWSE 188 + L++ + R + K + T E +Q Sbjct: 62 LNRKLSAFNSFLDFCHRN--RFDSLSTKFSLSKVPKNLPKYVTYETIQAGLGMIDRSDWI 119 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248 G + FL +G R S++ A ++ I+ K V + +K L Sbjct: 120 GLRDYALILFLYATGSRISEALIAEEGDIEIEWLRIRHGKGEKERYVPIAHEALKALRAY 179 Query: 249 P----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATA 304 K ++N + ++ + + S H +R AT GA Sbjct: 180 QEASPYNKPYLWLNYRGEPLSRISAFKITQKY-----LGVSPHALRHSYATALILGGADL 234 Query: 305 HELMATYGWKTVDQAETYTKGADR 328 + G ++ + YT + Sbjct: 235 RVVQELLGHASLLTTQIYTHVQKQ 258 >gi|163737550|ref|ZP_02144967.1| phage integrase [Phaeobacter gallaeciensis BS107] gi|161389076|gb|EDQ13428.1| phage integrase [Phaeobacter gallaeciensis BS107] Length = 343 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 58/351 (16%), Positives = 106/351 (30%), Gaps = 19/351 (5%) Query: 1 MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60 MT LP +V +R G + + R + F Y L G Sbjct: 1 MTRK-SLPKYVYNDR---GYLRFIRRSRGISVMMHEEAGTPEFWDHYNRLLKG------- 49 Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 +P + LI Y +S + L +R + Y I + D +I T HI Sbjct: 50 NPAPAPVRRNFEALILSYYESDPYKKLKPRTRSDYRRYISHIREIWAEKDPARIETHHIY 109 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW-TKEDM 179 + A + M VL A ++ + + W D Sbjct: 110 ELHRANADHWRQANYLVQVMVVLMNHARLIGFIKKEHGNPAKGIPLFKQQSDGWEPWPDD 169 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239 + + + RL +E + +G R D + +H + F KT + + L + Sbjct: 170 VRAEFEALASKRARLVYELCVGTGQRIGDVVKMKWEHFSDEGFDFTQGKTDKPLWIPLTN 229 Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK----SAHGVRKFSAT 295 L T + + ++ + + K K HG+RK + Sbjct: 230 RLKTHLEGIARTDGTVVTDAKDRPVSYRIVAEEMRTIKRKMKHEKASYYKTHGLRKNATI 289 Query: 296 ISADAGATAHELMATYGWKTVDQAETY---TKGADRIRLGIKNSRRISSVV 343 AG + A G V+ + Y + + + + ++ Sbjct: 290 ELYLAGCDDEMVKAVTGHSGVEMLKKYGGPIRQRELAKRAQEARNQMERSK 340 >gi|15643727|ref|NP_228775.1| integrase-recombinase protein [Thermotoga maritima MSB8] gi|222100583|ref|YP_002535151.1| Integrase-recombinase protein [Thermotoga neapolitana DSM 4359] gi|4981505|gb|AAD36046.1|AE001759_10 integrase-recombinase protein [Thermotoga maritima MSB8] gi|221572973|gb|ACM23785.1| Integrase-recombinase protein [Thermotoga neapolitana DSM 4359] Length = 253 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 36/260 (13%), Positives = 79/260 (30%), Gaps = 21/260 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSS 132 + EY + + + + S + + IT + + + + K+ P++ Sbjct: 1 MDEYLEYLKVVKKRSERTLYQYRSILREF------TRFEPITPETWKEYLNTISKNAPAT 54 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 L ++ W + + E + + + D + + Sbjct: 55 QRNKLVVVKNYLNWRADRGLLNAEERFWNEAEPPRHTVLPKAIELDEVRRIIEACDNPLY 114 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250 R F+ L +G+R S+ V + K + + ++ L + Sbjct: 115 RAIFKVLANTGMRVSEIVNLSVHDISVNETARIRIKGKGNKERIINVSKELVEELMNSGF 174 Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELM 308 ++ K + K A KAG+ K + H R A + G +++ Sbjct: 175 FEK---------KPSVRSIQRAVKRYARKAGIKKKVTPHIFRHSFAVALIERGVPLNKIQ 225 Query: 309 ATYGWKTVDQAETYTKGADR 328 A G + Y K A Sbjct: 226 ALLGHANISTTSIYLKIASE 245 >gi|225175140|ref|ZP_03729136.1| integrase family protein [Dethiobacter alkaliphilus AHT 1] gi|225169316|gb|EEG78114.1| integrase family protein [Dethiobacter alkaliphilus AHT 1] Length = 386 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 54/386 (13%), Positives = 119/386 (30%), Gaps = 52/386 (13%) Query: 1 MTPSLRLPPFVTKERTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKR 58 M + + + G+ G + + + + T A+ + K Sbjct: 1 MARRSKGEGSIYQRSD--GRWQGRVVIGKDEQGKTKYQFFYGKTKAE-VTKAVKEAVGKV 57 Query: 59 EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTK 117 E TT + S ++ ++ ++E+++ I G KI Sbjct: 58 EKGIDINAGKTTFTEWFEIWLASKK-NNIKPSTYDTYETFWRVHIKSALGHMKLDKIQPH 116 Query: 118 HIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIR 172 H++ ++ ++ +P S T++ K A++Q + +E PK Sbjct: 117 HVQKLLDEKQGGELSPRSVRYIHTTINTALKSALKQRIISFNPADAELLELPKNTKIKEV 176 Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 +D + ++ + +A+ L G+R + +++ ++ + T Sbjct: 177 KPLTQDDVKAFIATAKEDKFSVAYILSLALGMRKGEVLGLQWENIDFEQKTLTIKNNLTR 236 Query: 233 -----------------ITVELPDGFMKLLAMTPI--------------------GKETF 255 V LP+ + LL+ Sbjct: 237 VKGKGLVLTTPKTASSNRVVLLPEKILTLLSEHGRKQAVEREIAKASGKYSEAEGFDNMV 296 Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWK 314 F + + + F FK KAG+++ H +R T+ +AG + AT G Sbjct: 297 FTYEEGKPVCPRYFERKFKKVLEKAGLSQAGLHSLRHSYGTLQNEAGVNMKAIQATLGHS 356 Query: 315 TVDQAE-TYTK-GADRIRLGIKNSRR 338 YT+ + R + + Sbjct: 357 KASFTMSVYTQNTTELQREATQAVDK 382 >gi|28378506|ref|NP_785398.1| integrase/recombinase [Lactobacillus plantarum WCFS1] gi|254556720|ref|YP_003063137.1| integrase/recombinase [Lactobacillus plantarum JDM1] gi|300767452|ref|ZP_07077364.1| tyrosine recombinase XerC [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308180663|ref|YP_003924791.1| integrase/recombinase [Lactobacillus plantarum subsp. plantarum ST-III] gi|28271342|emb|CAD64247.1| integrase/recombinase [Lactobacillus plantarum WCFS1] gi|254045647|gb|ACT62440.1| integrase/recombinase [Lactobacillus plantarum JDM1] gi|300495271|gb|EFK30427.1| tyrosine recombinase XerC [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308046154|gb|ADN98697.1| integrase/recombinase [Lactobacillus plantarum subsp. plantarum ST-III] Length = 314 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 34/281 (12%), Positives = 82/281 (29%), Gaps = 28/281 (9%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHI---RSGVE 124 ++ + K + + ++ G Y ++ + S + Sbjct: 4 DYLTLFLKYIRVERQYSEETAAAYREDIQAFNDFLTANGGAKAYTEVDRLDVNVYLSHLY 63 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE-----DM 179 R T +S + ++S+R + + V+ + +NP + V+ K R + ++ Sbjct: 64 DRHLTRNSIARKVSSLRSFYNFLVKNDLAKLNPFVYVQLKKHAARLPRFFYQKELDVLFQ 123 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238 + G++ E L +G+R S+ + + ++ + K V Sbjct: 124 TVYADDSVMGARNAALLEVLYGTGIRLSECVDLQLADVDYDLKMMLIRGKGDKERYVPFG 183 Query: 239 DGFMKLLAMTPIGKETFFI------------NNDKQKMNATQFSIWFKAKATKAGV--NK 284 L + N + K+ + + Sbjct: 184 RYAATALQHYETVCRQPVMAKYGQTHQTVFINRHGGPITGGGIEYVLNQIVKKSSLTADI 243 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 H +R AT + GA + G ++ + Y Sbjct: 244 HPHMLRHTFATQMLNNGADLRTVQELLGHTSLSTTQIYAHV 284 >gi|303241172|ref|ZP_07327680.1| integrase family protein [Acetivibrio cellulolyticus CD2] gi|302591299|gb|EFL61039.1| integrase family protein [Acetivibrio cellulolyticus CD2] Length = 330 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 48/309 (15%), Positives = 108/309 (34%), Gaps = 47/309 (15%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-------------SGDFDYRKITTK 117 LK ++ Y ++ ++N+ + R D + + Sbjct: 13 LKDFLN-YLQTI--KGKSINTVQVYFYDLRVFFRFLKMDRNLVDKKLDFDKIDICDVDIE 69 Query: 118 HIRSGV------------ESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERP 164 I++ +R +T + + + S++ F + + + + +NP +E P Sbjct: 70 LIKTVTLSDLYSFMSYVSNNRDNTSYARARKVASLKSFFNYLFNKAKLLNVNPASELESP 129 Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221 K R E+ +Q S + G+ + L G+R S+ + +++N+ Sbjct: 130 KILKRLPRYLNVEESKQLLSSVNTGTYSERDYAMLTLFLNCGMRLSELVGININNIKNDT 189 Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWF 273 + K ++ L ++ + + FI+ KQ+++ Sbjct: 190 LT-VIGKGDKERSIPLNSACLEAIEAYMKVRPVNGVKDKNALFISGRKQRISKESVQKIV 248 Query: 274 KAKATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADRI 329 K +AG++ S H +R +AT+ G L G +++ E YT D+ Sbjct: 249 KKYIKQAGLDPQRYSTHKLRHTAATLMYKYGKVDIRALQELLGHESIATTEIYTH-LDKE 307 Query: 330 RLGIKNSRR 338 +L + Sbjct: 308 QL-KDAVDK 315 >gi|255525234|ref|ZP_05392176.1| integrase family protein [Clostridium carboxidivorans P7] gi|296188719|ref|ZP_06857107.1| phage integrase [Clostridium carboxidivorans P7] gi|255511097|gb|EET87395.1| integrase family protein [Clostridium carboxidivorans P7] gi|296046983|gb|EFG86429.1| phage integrase [Clostridium carboxidivorans P7] Length = 330 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 46/295 (15%), Positives = 97/295 (32%), Gaps = 46/295 (15%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRK--------------SGDFDYRKITTKHIRSGV 123 Y ++ + N+ ++ R + I +R Sbjct: 23 YLETI--KGKSQNTIKGYKIDLTMFFRFLKIYKGLINDETLDFEEIPIGDIDNSLLRKIT 80 Query: 124 ------------ESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEG 170 + R+++ + + + +++ FK+ + R + + NP + +E PK Sbjct: 81 LADLYAFLSFTEKYRQNSTYARARKVATLKSFFKFLSSRAKVIDENPAVDLESPKISKRN 140 Query: 171 IRPWTKEDMQQFKSFW--SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228 T ++ + + L GLR S+ C + +++ +I + K Sbjct: 141 PTYLTLDESKSLLKAVSGRNKERDYCIITLFLNCGLRLSELCSINISNIKGDILT-VIGK 199 Query: 229 TGTIITVELPDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKAT 278 TV L + +K L I K+ FI+ + +M+ + K Sbjct: 200 GNKERTVYLNNACIKALNNYLKVRSENIDKIIDKDVLFISKNHTRMSKRTVEVMLKKHLI 259 Query: 279 KAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADRI 329 A ++ + H +R +AT+ G L G + V + YT D Sbjct: 260 NAELDSEKYTPHKLRHTAATLMYKYGNVDIRSLQKILGHENVSTTQIYTHVDDEK 314 >gi|254251134|ref|ZP_04944452.1| Site-specific recombinase XerC [Burkholderia dolosa AUO158] gi|124893743|gb|EAY67623.1| Site-specific recombinase XerC [Burkholderia dolosa AUO158] Length = 306 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 46/288 (15%), Positives = 91/288 (31%), Gaps = 31/288 (10%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTP 130 I+ Y + L+ ++ ++ D++ + + +T +R + + + Sbjct: 6 IAAYLSNLKHVRQLSEHTLRAYTHELDELKKLAAGRPLETLTAVDMRGAVARAHAGGLSA 65 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFW 186 S L++ R ++W + + NP +V PKR + + +D M + Sbjct: 66 RSIAHRLSAWRAFYRWLAQHVEMPANPVAAVRAPKRPKTLPKALSVDDASALMDAPLADT 125 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------GTIIT 234 +EG + R E SGLR ++ V + Q + + Sbjct: 126 TEGIRDRAILELFYSSGLRLAELIGLDVAYAQADGYRSAGWLDLAEAEVTVRGKGNKERK 185 Query: 235 VELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--K 284 V + + L F++ +M K A AG+ Sbjct: 186 VPVGRKAIDALNAWLAVRGEFVRHDPHPLFLSVRGNRMAPGVVRERVKRAALAAGIPANV 245 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R AT + + G +V + YT D L Sbjct: 246 HPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQIYT-SLDFQHLA 292 >gi|229845511|ref|ZP_04465639.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae 6P18H1] gi|229811527|gb|EEP47228.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae 6P18H1] Length = 295 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 38/271 (14%), Positives = 89/271 (32%), Gaps = 20/271 (7%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESR 126 ++ Y ++ ++ +++ D II+ D T + I + + + Sbjct: 4 ALNRYWDYLRIERQMSPHTITNYQHQLDAIIKILAQQDIHAWTQVTPSVVRFILAESKKQ 63 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 S L+++R + V+Q + +NP + PK+ + E +QQ + Sbjct: 64 GLKEKSLALRLSALRRFLSFLVQQGELKVNPATGISAPKQGRHLPKNMDGEQVQQLLAND 123 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 + R E + SGLR S+ + + + ++ V Sbjct: 124 SKEPIDIRDRAILELMYSSGLRLSELHGLDLNSINTRVREVRVIGKGNKERVVPFGRYAS 183 Query: 243 KLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293 + E F++ +++ + + G+ + + H +R Sbjct: 184 HAIQEWLKVRALFNPKDEALFVSQLGNRISHRAIQKRLETWGIRQGLNSHLNPHKLRHSF 243 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324 AT +A + + G + + YT Sbjct: 244 ATHMLEASSDLRAVQELLGHSNLSTTQIYTH 274 >gi|300775996|ref|ZP_07085855.1| tyrosine recombinase XerC [Chryseobacterium gleum ATCC 35910] gi|300505129|gb|EFK36268.1| tyrosine recombinase XerC [Chryseobacterium gleum ATCC 35910] Length = 306 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 39/270 (14%), Positives = 88/270 (32%), Gaps = 21/270 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVESR--- 126 + ++ + + + ++ S++ + + K K IR+ + Sbjct: 13 LEKFLEYLEFEKRYSPHTVTSYKKDLEDFSHFFLRTESSDNLAKADKKIIRNFIVELSEH 72 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + S + L+S+R + + ++ + ++P + K E P +KE+M Sbjct: 73 NISKRSINRKLSSLRSFYLFLLKIGEIKVSPTEGISSLKFYAEKQIPMSKEEMADLNDRV 132 Query: 187 SEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 E + E L +G+R ++ C +++ +K V + Sbjct: 133 FEQVHDVLEKCIMEVLYQTGMRKAELCGLIFENVDLYGKELKIIGKGNKERVVPISSELA 192 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQ-------FSIWFKAKATKA--GVNKSAHGVRKFS 293 +LL + +N + + KS H +R Sbjct: 193 ELLTSYLEIRNPQTEYKSYFFVNKKGKKLNEKFVYVVVNKYLSLITTKEKKSPHILRHSF 252 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYT 323 AT D GA ++ G ++ + YT Sbjct: 253 ATHVLDNGAEISKVKKILGHSSLASTQVYT 282 >gi|208779508|ref|ZP_03246853.1| phage integrase family protein [Francisella novicida FTG] gi|208744469|gb|EDZ90768.1| phage integrase family protein [Francisella novicida FTG] Length = 292 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 31/255 (12%), Positives = 89/255 (34%), Gaps = 15/255 (5%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMR 141 + + + +++ Q+ + D + +T I ++ ++P + + L+S+R Sbjct: 18 KNYSQETINNYQRDLLQLNQALSDKNIISLTHSDILIWIKKLHAQGNSPKTLQRKLSSVR 77 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRLAFEF 198 F + + E V+ NP ++ PK + +++ + F+ Sbjct: 78 SFFNFLINSEIVSQNPANGIKAPKDSKRLPKVVNTDELAYLLDVNPSNDIEARDIACFDL 137 Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFI 257 L G+R S+ ++++ + +I+ V + L +++ Sbjct: 138 LYSCGIRLSELSSVELKYISISQKNIRVTGKGNKQRIVYFGTKTLSNLNRWLKIRDSLKP 197 Query: 258 NNDKQKMNATQFSIWFKAKATKAGV--------NKSAHGVRKFSATISADAGATAHELMA 309 ++D ++ + ++ + + + H +R A+ D+ + Sbjct: 198 SSDYLFISRDGKHLTNRSIQKRLEIFAQKYASRHIHPHMLRHSFASHVLDSSKDLLAVKD 257 Query: 310 TYGWKTVDQAETYTK 324 G + + YT Sbjct: 258 LLGHADISSTQIYTH 272 >gi|284048585|ref|YP_003398924.1| tyrosine recombinase XerC [Acidaminococcus fermentans DSM 20731] gi|283952806|gb|ADB47609.1| tyrosine recombinase XerC [Acidaminococcus fermentans DSM 20731] Length = 311 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 37/273 (13%), Positives = 81/273 (29%), Gaps = 27/273 (9%) Query: 88 AVNSRISFESYFDQIIRKSG----DFDYRKITTKHIR---SGVESRKHTPSSAIQFLTSM 140 + + ++ + DF + ++T IR + + R + + + ++S+ Sbjct: 31 SPLTIENYLADIRHFKEFMAQRTEDFRWPQVTVLDIRSYLAQMHDRDLSRRTIARRISSL 90 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----QFKSFWSEGSQPRLAF 196 R +++ R+ V NP V PK + + + ++ G + R Sbjct: 91 RSFYRYLRREGRVKTNPFTRVRTPKLEKKLPVFLEEFEINLLLRMPDCTTVLGRRDRAIL 150 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIK-----TQKTGTIITVELPDGFMKLLAMTPIG 251 EFL +G R S+ + + ++ + L + Sbjct: 151 EFLYSTGCRVSELVGLTLTRVDLGNRYAILLGKGRKERLVPLGHPCVAAMEDYLRHSRGT 210 Query: 252 KETFFINNDKQ---------KMNATQFSIWFKAKAT--KAGVNKSAHGVRKFSATISADA 300 + Q ++A + S H +R AT D Sbjct: 211 LMEKYQAPRHQTVFVNSRGRPLSARSVRRILDKYVEMTALQKHVSPHTIRHTFATHLLDH 270 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 GA + G ++ + YT + Sbjct: 271 GADLRAVQELLGHVSLSTTQIYTHVTAERLTAV 303 >gi|226525271|gb|ACO70871.1| integrase family protein [uncultured Verrucomicrobia bacterium] Length = 294 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 37/287 (12%), Positives = 93/287 (32%), Gaps = 23/287 (8%) Query: 74 LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG---VESRKHT 129 + +++ + +++ + + D +++ +T H R + R+ + Sbjct: 5 FAEGFLHHLENERNVSPRTLTNYQHALSEFRKAMPDANWKTLTADHFRRYLFAMAKREMS 64 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--- 186 + ++R +K+ V + + NP V+ PK + T + + + Sbjct: 65 KPTQRLHFAALRTFYKYLVERHGLETNPLKQVQLPKLDRKLPVVLTAKQVVELLEAPLKV 124 Query: 187 --------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-----II 233 + E SGLR ++ V L S++ G + Sbjct: 125 DKQKQAPVWMPFRDAAIMELFYSSGLRLAELVGLNVADLDVYTESVRVIGKGRKERVVPV 184 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291 K + FI+ + ++ + + + + + H +R Sbjct: 185 GQPALLAVQKYRQEAKVHVGPLFISKLRTRLTPMRVWLVIQRYLPHTSIPVNVTPHKLRH 244 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKNSR 337 AT D GA + + G ++ + YT +R++ ++ Sbjct: 245 SFATHLLDHGADLRAVQSLLGHASLSTTQIYTHVTTERLKRAYDDAH 291 >gi|320096216|ref|ZP_08027802.1| integrase/recombinase XerD [Actinomyces sp. oral taxon 178 str. F0338] gi|319976842|gb|EFW08599.1| integrase/recombinase XerD [Actinomyces sp. oral taxon 178 str. F0338] Length = 299 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 36/287 (12%), Positives = 88/287 (30%), Gaps = 28/287 (9%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVES-- 125 ++ ++ + ++ ++ + + +G +T + R+ + Sbjct: 5 VLDQWGAHLRHSRGASAHTVRAYTADLAAFLAFTGTDPADPGAASALTLRAARAWLADSV 64 Query: 126 -RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP--------WTK 176 R S+ + + ++R WA R+ + ++ + R + Sbjct: 65 ARGAARSTVSRHVAALRNFSAWAHREGLAPTDAAAALASARADQRLPRVVDQDEAAALLE 124 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITV 235 + + + E + +G+R S++C + +++ K TV Sbjct: 125 CARSRASADDPVSVRDWAILELIYATGIRVSEACSLTTSSIDPAALTVRVLGKGDKERTV 184 Query: 236 ELPDGFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGV-NKSA 286 L + F+ ++ +AGV + + Sbjct: 185 PFGVPARDALDQWTVRARPSLAVGTDALFVGAKGGPIDPRVVRAMIHRMCARAGVRDIAP 244 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 HG+R +AT GA + G ++ + YT D RL Sbjct: 245 HGLRHSAATHLLQGGADLRAVQEILGHSSLATTQRYTH-VDAGRLSD 290 >gi|187778276|ref|ZP_02994749.1| hypothetical protein CLOSPO_01868 [Clostridium sporogenes ATCC 15579] gi|187771901|gb|EDU35703.1| hypothetical protein CLOSPO_01868 [Clostridium sporogenes ATCC 15579] Length = 358 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 51/339 (15%), Positives = 103/339 (30%), Gaps = 31/339 (9%) Query: 10 FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 F+ + ++GK ++ + + +S A L + P + Sbjct: 16 FIVSYKDKNGKW--------KQKSKQGFKKKSDAKKAADKLLDELKEMFKNNIDPSSENI 67 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129 T +Y + ++N+ ++F + + + D D KITT I+ +++ Sbjct: 68 TFGEFSDKYIEHLKLYR-SINTILAFNTVLNHF-KHLDDTDISKITTLDIQLVIDNLTKE 125 Query: 130 ---PSSAIQFLTSMRVLFKWAVRQEY-VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 P++ ++ + +FK A + + P +++ K + + Sbjct: 126 GLNPNTIHDYVRKLNTIFKAARDEYNLIYNLPTKNIKINANKKPTNKKALNNHDENKLLG 185 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII------------ 233 + S+ L L GLR + + + +I K I Sbjct: 186 DFQNSKYYLIILLALKCGLRLGEILGLKWEDIDEVNNTITINKQWKQIDAGRSIYGYGRV 245 Query: 234 -----TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHG 288 +P + L + N N SI A K G + + H Sbjct: 246 KGKNSNRTIPISQLTLNELKKYKNIVNINNRIFSFKNTDSVSICLNALLKKEGYDITIHE 305 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 +R AT G + G TY+ D Sbjct: 306 LRHTYATKLISHGLDFKTVARLLGHTVEQTMRTYSHVND 344 >gi|118498082|ref|YP_899132.1| site-specific recombinase [Francisella tularensis subsp. novicida U112] gi|194323307|ref|ZP_03057091.1| phage integrase family protein [Francisella tularensis subsp. novicida FTE] gi|254373434|ref|ZP_04988922.1| integrase/recombinase XerC [Francisella tularensis subsp. novicida GA99-3549] gi|254374894|ref|ZP_04990375.1| hypothetical protein FTDG_01073 [Francisella novicida GA99-3548] gi|118423988|gb|ABK90378.1| site-specific recombinase [Francisella novicida U112] gi|151571160|gb|EDN36814.1| integrase/recombinase XerC [Francisella novicida GA99-3549] gi|151572613|gb|EDN38267.1| hypothetical protein FTDG_01073 [Francisella novicida GA99-3548] gi|194322671|gb|EDX20151.1| phage integrase family protein [Francisella tularensis subsp. novicida FTE] Length = 292 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 31/255 (12%), Positives = 88/255 (34%), Gaps = 15/255 (5%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMR 141 + + + +++ Q+ + D + +T I ++ ++P + + L+S+R Sbjct: 18 KNYSQETINNYQRDLLQLNQALSDKNIISLTHSDILIWIKKLHAQGNSPKTLQRKLSSVR 77 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRLAFEF 198 F + + E V+ NP ++ PK + +++ + F+ Sbjct: 78 SFFNFLINSEIVSQNPANGIKAPKDSKRLPKVVNTDELAYLLDVNPSNDIEARDIACFDL 137 Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFI 257 L G+R S+ ++ + + +I+ V + L +++ Sbjct: 138 LYSCGIRLSELSSVELKDISISQKNIRVTGKGNKQRIVYFGTKTLSNLNRWLKIRDSLKP 197 Query: 258 NNDKQKMNATQFSIWFKAKATKAGV--------NKSAHGVRKFSATISADAGATAHELMA 309 ++D ++ + ++ + + + H +R A+ D+ + Sbjct: 198 SSDYLFISRDGKHLTNRSIQKRLEIFAQKYASRHIHPHMLRHSFASHVLDSSKDLLAVKD 257 Query: 310 TYGWKTVDQAETYTK 324 G + + YT Sbjct: 258 LLGHADISSTQIYTH 272 >gi|315500433|ref|YP_004089236.1| integrase family protein [Asticcacaulis excentricus CB 48] gi|315418445|gb|ADU15085.1| integrase family protein [Asticcacaulis excentricus CB 48] Length = 304 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 40/290 (13%), Positives = 94/290 (32%), Gaps = 35/290 (12%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 + + +R ++ + +G + + +++R S+ + + Sbjct: 17 RNASPRTREAYGHDLLDLRNHAGIDADGLLTLNEGDIAGFFAALDARGLASSTLQRKRAA 76 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGSQPRL 194 +R +++ VR+ +P + K+ + +++++ + + ++ + Sbjct: 77 VRQFYRFCVREGLSDNDPSRKIAAAKKGRPLPKILSRQEVDALIAAADAKDAHQATRLQC 136 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMT----- 248 E SG+R S+ + +Q + I K GT V L + Sbjct: 137 LIEIAYASGMRVSEIVALRLDAVQKDPAYLIVKGKGGTERLVPLNPSARAAIKDYLDIRP 196 Query: 249 -------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISA 298 F + + + A +AG++ S H +R AT Sbjct: 197 LFLNAKDKANPYLFCSRGAEGHLTRRRVGQLLDEAALEAGIDPARVSPHVLRHAFATHLL 256 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 + GA + G + + YT A R+ VV++ P Sbjct: 257 EGGADLRVVQTLLGHADISTTQVYTHVATE---------RLKEVVETHHP 297 >gi|312793576|ref|YP_004026499.1| integrase family protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180716|gb|ADQ40886.1| integrase family protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 327 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 42/287 (14%), Positives = 90/287 (31%), Gaps = 45/287 (15%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDY-------------------------RKITTKHI 119 + + N+ + +R D + +T ++ Sbjct: 21 KNKSPNTIKEYYYDLRTFLRYLKAKDLNILSQIEKIEDLENIDVSNFEIEKLKTLTLSNL 80 Query: 120 RSGVESRKHT----PSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPW 174 P + + + S+R FK+ + + + NP +E PK R Sbjct: 81 YEYFSFLATRFNNGPYARARKVASIRSFFKYLYSKAKLIPDNPAKDLESPKLGKRNPRYL 140 Query: 175 TKEDMQQFKSFWS--EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 T ++ ++ S + L GLR S+ + +++++ I + Sbjct: 141 TLDESKKLLSSIDGENKERDFAIITLFLNCGLRLSELVNINLSDIKDDMLRIVGKGN-KE 199 Query: 233 ITVELPDGFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGV-- 282 + L + + T F++ K++++ + AG+ Sbjct: 200 RIIYLNKACKDAIENYLKVRPTEGVKDKDALFLSERKKRISRRTVQYIVEKYVKMAGINQ 259 Query: 283 -NKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD 327 SAH +R +AT+ G L G +++ E YT D Sbjct: 260 KKISAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVND 306 >gi|83859702|ref|ZP_00953222.1| integrase/recombinase XerD [Oceanicaulis alexandrii HTCC2633] gi|83852061|gb|EAP89915.1| integrase/recombinase XerD [Oceanicaulis alexandrii HTCC2633] Length = 311 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 38/292 (13%), Positives = 91/292 (31%), Gaps = 33/292 (11%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKH--- 128 I + A N+ ++ + ++ G T + + Sbjct: 6 IDLFLDMMAAERGAARNTLDAYRRDLEDAAQRLGAHGTGLESAQTADVERFLSDLASDGL 65 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +P++A + L++++ +++ +++ A +P ++ PK+ + ++ ++ Sbjct: 66 SPATAARRLSALKRYYRFLLKEGLRADDPAKTLSGPKKPRPLPKVLSEGQVETLFDAADR 125 Query: 189 -----GSQPRLAFEFLLYSGLRCSDSC-------------------RAGVQHLQNNIFSI 224 G + R E L GLR S+ + + +I Sbjct: 126 IEGADGFRLRALLELLYAGGLRVSELVTLPLAAFARSERCLVVTGKGGKERLVPLTDSAI 185 Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN- 283 + + + + + + +F+ KA + AG++ Sbjct: 186 RAVEAYKAVRADHLPSRAAVTHAVASRYLFPSRTARDGHLTRERFAQLLKALSLAAGLDP 245 Query: 284 --KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 S H +R AT GA + + G V E YT + + Sbjct: 246 QQVSPHVMRHAFATHLLANGADLRSVQSLLGHADVSTTEIYTHVLEARLKAL 297 >gi|240851325|ref|YP_002972728.1| integrase /recombinase XerC [Bartonella grahamii as4aup] gi|240268448|gb|ACS52036.1| integrase /recombinase XerC [Bartonella grahamii as4aup] Length = 322 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 36/273 (13%), Positives = 78/273 (28%), Gaps = 29/273 (10%) Query: 82 AHWGSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRSGVESRKH---TP 130 ++ + ++E Q + D + +R+ + R+ + Sbjct: 34 VQTRRMSAQTMQAYERDTRQFLSFLCQHLSHTPTLTDLAHLRISDLRAYLAYRRTNNVSA 93 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE-------DMQQFK 183 S + + +R FK+ R+ V + + PK +P + Q + Sbjct: 94 RSLSRGVAGIRSFFKYLSREGIVNVPAAQLIRSPKHPKSLPKPLAIKSALHIVKQENQLE 153 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--IKTQKTGTIITVELPDGF 241 + ++ L G+R S++ + + + T K G V L Sbjct: 154 NEPWISARNAAVLMLLYGCGMRISEALSLTPEQFSDPEKTSLFITGKGGKTRLVPLIKVV 213 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQ-------FSIWFKAKATKAGVN--KSAHGVRKF 292 + + +NN A + G+ + H +R Sbjct: 214 YEAVQNYLKCCPYPLVNNQPIFRGARGGPLQPAIIQKTVRNLRASLGLPETATPHTLRHS 273 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKG 325 AT G + G ++ + YT Sbjct: 274 FATHLLSRGGDLRTIQELLGHASLSTTQIYTHV 306 >gi|157692293|ref|YP_001486755.1| site-specific tyrosine recombinase XerC [Bacillus pumilus SAFR-032] gi|172046054|sp|A8FD78|XERC_BACP2 RecName: Full=Tyrosine recombinase xerC gi|157681051|gb|ABV62195.1| tyrosine recombinase [Bacillus pumilus SAFR-032] Length = 305 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 42/279 (15%), Positives = 88/279 (31%), Gaps = 28/279 (10%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVESRK 127 L EY + + + + + ++ +R G + T+ + + Sbjct: 10 LFIEYLQIE--KNYSALTISGYTEAIEEFVRFMNVQGIDGFEEVSYQDTRIYLTEAYEKG 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFK 183 T + + ++++R +K+ +R++ V NP L V PK+ +E+ Sbjct: 68 LTRRTISKKVSALRSFYKFLLREQLVKENPFLLVSLPKQDKRIPSFLYEEELKELFTVSD 127 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFM 242 G + + E L +G+R S+ C L ++ ++ K V Sbjct: 128 VSTPLGQRNQAILELLYATGMRVSELCSLKESDLDLSMDTVLVHGKGSKQRYVPFGSYAH 187 Query: 243 KLLAMT-------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAG--VNKSAH 287 + L F+N + KA ++ H Sbjct: 188 EALITYLEDGRLKLKAKGKDRADAYVFLNQRGAPLTDRGVRFILTELMKKASGTLHIHPH 247 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 +R AT + GA + G + + YT + Sbjct: 248 MLRHTFATHLLNEGADLRSVQELLGHSNLSSTQVYTHVS 286 >gi|323973095|gb|EGB68288.1| phage integrase [Escherichia coli TA007] Length = 334 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 45/314 (14%), Positives = 94/314 (29%), Gaps = 10/314 (3%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 ++ G+ + R + R+ + + + ++ + TL Sbjct: 4 KKLEDGRYLLDIRPNGRKGKRVRKVFDKKSVAVATERYIMANAEKREYIQGYRDRRTLND 63 Query: 74 LIS-EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132 L+ + A R + +++ D K+ RS + PSS Sbjct: 64 LLELWWMYHGQHRRKAEEDRKQLRNIINELGADMQAVDLDKLKIIAWRSQKIADGLKPSS 123 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 A +++ + +F + + + + + EG Sbjct: 124 ANRYMNRLSGMFTVLKKIGLWDAEHPVRGISILYVSPREMAFLSQKEVALLLDTLEGDYW 183 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252 R+A L +G R S++C+ + + +N + K G TV + + + G Sbjct: 184 RVALLC-LSTGARWSEACKLRGEQIVHNRVTFLETKNGRKRTVPISQAVCEAIKTKETGN 242 Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYG 312 +F + K ++AH +R A+ G L G Sbjct: 243 LFEVK--------YREFCLMLKRVKPDLPKGQAAHVLRHTFASHFVMNGGNIIALQKILG 294 Query: 313 WKTVDQAETYTKGA 326 T+ Q Y A Sbjct: 295 HATIQQTMAYAHFA 308 >gi|206602847|gb|EDZ39328.1| Putative phage integrase family protein [Leptospirillum sp. Group II '5-way CG'] Length = 314 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 40/296 (13%), Positives = 87/296 (29%), Gaps = 21/296 (7%) Query: 71 LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESRK 127 ++ L+ + + + ++ ++ + R G+ + + + R+ Sbjct: 5 VRDLLDAFEEDLRVASGRSPHTTQAYLLDLFALARFLGEHGLSLLDFSPEDVTRYFTRRE 64 Query: 128 H-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 S + L+++R ++ R+ + ++ P+ +E++ + Sbjct: 65 DLAMRSRSRVLSAIRSWSRFLKRRG-LPSIDPDTLPVPRLPRNLPGVLDEEEILRLLEAP 123 Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 EG + R SGLR S+ + L I+ L Sbjct: 124 DPKTDEGIRDRAILATFYASGLRVSELAELTLDRLNLKEEQIRVTGKGQKERVAFLDGVS 183 Query: 242 MKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291 L + F+ + + K A + G+++ S H +R Sbjct: 184 CARLRLYLERVRPSTSTSDKTLFLTRRQTGFTRQGLWLLIKGYAKQCGIDRNVSPHTLRH 243 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347 AT G + G + E YT D L +R D Sbjct: 244 SFATHLLSHGMDIRSIQILLGHSDIQTTEIYTH-VDIRMLAEDLARYHPRGKQPDR 298 >gi|153005656|ref|YP_001379981.1| phage integrase family protein [Anaeromyxobacter sp. Fw109-5] gi|152029229|gb|ABS26997.1| phage integrase family protein [Anaeromyxobacter sp. Fw109-5] Length = 451 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 49/345 (14%), Positives = 99/345 (28%), Gaps = 26/345 (7%) Query: 26 RKGHGR--RIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT--TLKWLISEYRK- 80 R G R R+ P + + PR+ TL + + Sbjct: 52 RLPDGTPIRERVKAPVSGKSAALRWAQEREGQILAQKGRKPRQARVVPTLAEFKPRFIEG 111 Query: 81 SAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQF 136 L ++ ++ES F + G I + ++ + S Sbjct: 112 HVKANRLKPSTAEAYESVFRTHLEPTFGSLRLDAIGDELVQRFKGELVEDEMANKSINNV 171 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196 LT++ V+ K AV + + PC E E + + + L Sbjct: 172 LTALSVMLKRAVDWKVIDAMPCRIRLLKWELVEVPFYDFAEYRYLVEGAAAIDPRIELLV 231 Query: 197 EFLLYSGLRCSDSCRAGVQHLQ-----------NNIFSIKTQKTGTIITVELPDGFMKLL 245 +GLR ++ + + + K G + L + + L Sbjct: 232 LLGGDAGLRRGETIALEWTDVDLRRRTVHVQRSSWNGHVTLPKGGRSRRLPLTERLAEAL 291 Query: 246 AMTPIGKETFFINNDKQK-MNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGA 302 K + D + +W + +A + + H +R + A GA Sbjct: 292 RSHRHLKGPRVLYYDGGASPTNKEIRMWVQRAQRRAVLPATGAYHILRHTFCSHLAMQGA 351 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347 TA + G + + + Y + + + R+ +D Sbjct: 352 TAKAIQELAGHQDLTTTQRYMHLSPAHK---DAAIRLLDRRPVED 393 >gi|110679359|ref|YP_682366.1| site-specific tyrosine recombinase XerC [Roseobacter denitrificans OCh 114] gi|109455475|gb|ABG31680.1| tyrosine recombinase XerC [Roseobacter denitrificans OCh 114] Length = 306 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 39/289 (13%), Positives = 83/289 (28%), Gaps = 29/289 (10%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSG 122 + + A N+ I+++ + G ++ +R+ Sbjct: 9 ADALQSWLAHQRAIKGAAENTLIAYQGDVIDFLSFITAHKGAPQGLGALADVSVTDMRAW 68 Query: 123 VESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + + T +A + L++++ +KW +E LS PK + + RP + Sbjct: 69 MAQTRETGVAARSLARKLSAVKAFYKWLALREGFEPTAVLSTRAPKFQKKLPRPLAPDAA 128 Query: 180 QQ-------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 + ++ L GLR S++ + K G Sbjct: 129 RNLIDAIEIQSQHPWVCARDVAVVTLLWGCGLRISEALSLTAADAPLPATLRISGKGGKE 188 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGVNKS 285 V + + + + A + G+ + Sbjct: 189 RIVPVLPAARDAVDAYVRMCPHPQTADAPLFRAVRGGPLRPGAIQKVMAAARMQLGLPAT 248 Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R AT +AG + G ++ + YT D +RL Sbjct: 249 ATPHAMRHSFATHLLNAGGDLRAIQELLGHASLSTTQAYT-AVDTVRLM 296 >gi|209551233|ref|YP_002283150.1| site-specific tyrosine recombinase XerC [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536989|gb|ACI56924.1| tyrosine recombinase XerC [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 311 Score = 119 bits (299), Expect = 6e-25, Method: Composition-based stats. Identities = 41/284 (14%), Positives = 86/284 (30%), Gaps = 30/284 (10%) Query: 77 EYRKS-AHWGSLAVNSRISFESYFDQIIRKS-GDF-------DYRKITTKHIRSGVESRK 127 + ++ A L+ ++ ++E Q + G D R++ R+ + +R+ Sbjct: 18 AWLENLARERRLSEHTLDAYERDTRQFLTFLTGHLAGPATLGDIRELRPADFRAFLAARR 77 Query: 128 HTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ---- 180 S A + L +R L ++ ++ V ++ PK+ +P + Sbjct: 78 KQGSGARSLGRNLAGLRSLLRYLEKKGLVNAAGAGAIRSPKQPKSLPKPLSDTQAITVVS 137 Query: 181 ---QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236 Q ++ L GLR S++ L+ +++ V Sbjct: 138 NEAQLHDEPWIAARDAAVMTLLYGCGLRISEALDLIPSDLKKGATTLRITGKGNKTRLVP 197 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-------FSIWFKAKATKAGVN--KSAH 287 L + + A + + G+ + H Sbjct: 198 LLSVVFDAVEKYRTLCPYDLEPGEPLFRGARGGKLQAAIIQRAMQKLRSAFGLPETATPH 257 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +R AT G + G ++ + YT G D RL Sbjct: 258 ALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYT-GVDASRL 300 >gi|259417091|ref|ZP_05741010.1| phage integrase [Silicibacter sp. TrichCH4B] gi|259345997|gb|EEW57811.1| phage integrase [Silicibacter sp. TrichCH4B] Length = 391 Score = 119 bits (299), Expect = 6e-25, Method: Composition-based stats. Identities = 42/347 (12%), Positives = 84/347 (24%), Gaps = 23/347 (6%) Query: 9 PFVTKERTRHGKIIYYFRK---GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65 ++ K RT G R G+ I L + I +A+ + + Sbjct: 40 RYIYKYRTHGGGRRAQTRWMTIGNYGEIPLE---TARNIALECAAMVARGQDPQSDKIKK 96 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSGVE 124 ++ +L L + +S L + + S + I+ G I+ + Sbjct: 97 REAPSLVDLWGRFEES-DMKRLKPATIRDYRSLWKNILEPALGKRRVADISRADVDRLHR 155 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 S TP A + + + + A E+ + + + + + Sbjct: 156 SMSDTPYQANRSIAVLSKMMTLAEIWEWRDQGTNPCRYVTRHREGKRERYLSTEELERLG 215 Query: 185 FWSEGSQPRLAFEFL--------LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 L G R S+ + I + T Sbjct: 216 AALTNLVDLGLLWPDMANLFRLLLLVGARRSEISNCEWNWIDWERRIIALPDSKTGAKPL 275 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-----FSIWFKAKATKAGVN-KSAHGVR 290 + + S +K +A + H +R Sbjct: 276 FLSNEAITVLQNQKITTRHQSSKFVFPGAKANKAIVNLSKPWKLICEEAELENLRIHDLR 335 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKNS 336 +A+I+ G + G Y AD Sbjct: 336 HTAASIAVGQGVALPIIGRLLGHTQTQTTARYAHVDADPALKAANAI 382 >gi|171910181|ref|ZP_02925651.1| hypothetical protein VspiD_03395 [Verrucomicrobium spinosum DSM 4136] Length = 318 Score = 119 bits (299), Expect = 6e-25, Method: Composition-based stats. Identities = 32/307 (10%), Positives = 84/307 (27%), Gaps = 27/307 (8%) Query: 48 MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIR-- 104 +A + K+ + L ++ S + + ++ + Sbjct: 2 AAAAPRKSGKKVVPARREPEGMARSELEMDFLTFMEVERSASPKTLENYRHAMSTFRKSQ 61 Query: 105 ----KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 ++ ++R FK+ R+ + NP L Sbjct: 62 PACMTWESLTPDDFRLYLYEQMKAELGR--ATIRLHFAALRSFFKFLTRRRGLVKNPLLE 119 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFW-----------SEGSQPRLAFEFLLYSGLRCSDS 209 V+ PK + + T ++ + + E +G+R S+ Sbjct: 120 VQLPKPEKKLPVVLTLSQVETLLNLPLNTPREKQAPAWAPERDAAILELFYSTGVRISEL 179 Query: 210 CRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTP----IGKETFFINNDKQKM 264 V+ + +++ + ++ + + F + ++M Sbjct: 180 ASLNVEDVDVYSETLRVIGKGRKERICPVGGPAIRAMQRYQSRLGVYSGPLFRSKVGKRM 239 Query: 265 NATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 + + +G+ + H +R AT + GA + G ++ + Y Sbjct: 240 TNQAINNVVEKYWKLSGLPVQVTPHKLRHSFATHLLNNGADLRSVQTLLGHASLSTTQIY 299 Query: 323 TKGADRI 329 T Sbjct: 300 THVTTER 306 >gi|167569023|ref|ZP_02361897.1| site-specific tyrosine recombinase XerD [Burkholderia oklahomensis C6786] Length = 325 Score = 119 bits (299), Expect = 6e-25, Method: Composition-based stats. Identities = 44/275 (16%), Positives = 85/275 (30%), Gaps = 26/275 (9%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS----GVESRKHTPSSA 133 + + L+ N+ ++ + + + +S+ Sbjct: 45 WLEH----GLSRNTLDAYRRDLQLFAQWLAAQHAENVDHANEAMLTGYIAARSDGKATSS 100 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--- 190 + L+ R + WAVR+ A++P L + K+ ++ ++ + + Sbjct: 101 NRRLSVFRRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALLAAPDVDTPLG 160 Query: 191 -QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT 248 + R E + SGLR S+ + N ++ V + + Sbjct: 161 LRDRTMLELMYASGLRVSELVTLKSVEVGLNEGVVRVTGKGSKERLVPFGEVAHGWIERY 220 Query: 249 PIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296 F+ M QF K A +A V + S H +R AT Sbjct: 221 LRDGRPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRAHLSPHTLRHAFATH 280 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 + GA + G + + YT A R RL Sbjct: 281 LLNHGADLRVVQLLLGHSDISTTQIYTHVA-RERL 314 >gi|83955392|ref|ZP_00964023.1| site-specific integrase/recombinase-like [Sulfitobacter sp. NAS-14.1] gi|83840036|gb|EAP79211.1| site-specific integrase/recombinase-like [Sulfitobacter sp. NAS-14.1] Length = 353 Score = 119 bits (299), Expect = 6e-25, Method: Composition-based stats. Identities = 46/328 (14%), Positives = 87/328 (26%), Gaps = 22/328 (6%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 RT+ ++ Y G R R F A A+ N+ R TL Sbjct: 4 RTKKTRVYQYDIVVGGHRFR-GSCGTEDFEAA--KAVEADIRANAKRNAARGSDYTLSEA 60 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSS 132 + Y G + + S + G K+T I + S+ Sbjct: 61 LGTYINDKIAGRPSEGTTKSQARVILSYMD--GKKRISKLTDADITQYAAKHRATCANST 118 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 + L + + + P + ++ + K R +Q + F + + Sbjct: 119 VNRHLQMLGRALRHMGKIYK-TEIPDIDLKAAETKEPRERVRELTTDEQTRLFAALPQEF 177 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL------- 245 F L +G R S + + I + G + + +G + L Sbjct: 178 HPIVAFALMTGARISTITGLLWRDVDMPNREISFRLKGDELMIFPINGELAALLSALPKS 237 Query: 246 ------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISA 298 + + + F ++ AGV H +R AT Sbjct: 238 NVMESRRYVFTRVDGHSAERIQIVASGGVFGTVWRKALLDAGVENFRFHDLRHTFATRML 297 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGA 326 + G ++ Y Sbjct: 298 RKTQNISLVSKLLGHTNIETTSRYAHVL 325 >gi|326771762|ref|ZP_08231047.1| site-specific recombinase, phage integrase family [Actinomyces viscosus C505] gi|326637895|gb|EGE38796.1| site-specific recombinase, phage integrase family [Actinomyces viscosus C505] Length = 307 Score = 119 bits (298), Expect = 6e-25, Method: Composition-based stats. Identities = 44/302 (14%), Positives = 92/302 (30%), Gaps = 33/302 (10%) Query: 68 PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG---------DFDYRKITTK 117 P T L+ YR L+ ++ ++ + ++ G D + Sbjct: 2 PRTRADLLDSYRSYLALQRDLSGHTVRAYLVDINDLLSFLGVGEGDAEPVDAALATLDLA 61 Query: 118 HIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 +R + + H+ ++ + S+R WA + + + P+ Sbjct: 62 DLRDWLAAMAASGHSRATLARRSASVRTFSSWAFETGLLTSDVAARLRAPRVDNRLPGVL 121 Query: 175 TKEDMQQFKSF--------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226 T + Q + E L +G+R S+ V L ++ +++ Sbjct: 122 TTQQASQLLKTASDLASDGHVLAVRDLAIIETLYATGVRVSELVGLDVADLDHSQRTLRV 181 Query: 227 -QKTGTIITVELPDGFMKLLAMTPIGKETFFINN---------DKQKMNATQFSIWFKAK 276 K TV K L + + ++++ Sbjct: 182 LGKGRKERTVPYGLPAAKALETWLHRRGEICAVDAGGALFLGARGRRIDPRAVRDVVHRL 241 Query: 277 ATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIK 334 A V HG+R +AT GA + G ++ + YT A+R+R + Sbjct: 242 CAAAQVPDLGPHGLRHSTATHVLGGGADLRSVQEFLGHSSLATTQRYTHVSAERLRSVYE 301 Query: 335 NS 336 + Sbjct: 302 QA 303 >gi|319953891|ref|YP_004165158.1| tyrosine recombinase xerc [Cellulophaga algicola DSM 14237] gi|319422551|gb|ADV49660.1| Tyrosine recombinase xerC [Cellulophaga algicola DSM 14237] Length = 308 Score = 119 bits (298), Expect = 6e-25, Method: Composition-based stats. Identities = 42/264 (15%), Positives = 96/264 (36%), Gaps = 24/264 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKHTP---SSAIQFL 137 ++N+ ++E+ ++ I D +++ IR+ + + + + + Sbjct: 26 KKYSLNTIKAYENDLNEFILFCKDTSEVVNIDEVSYVMIRNWIVALVAAKIVNRTINRKI 85 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-----WSEGSQP 192 S++ +K+ ++ E +++ P + K + P+++ +M + EG + Sbjct: 86 ASLKAYYKFLLKTETISVTPLAKHKALKTAKKIEIPFSEAEMNEILVAIPFSEDFEGIRD 145 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG- 251 +L E L +G+R + V ++ +IK + + LL + Sbjct: 146 KLIIELLYATGIRRIELVNLKVVNVDLRQKTIKVLGKRNKERIVPLVASLVLLFQEYLDA 205 Query: 252 ---------KETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSATISADA 300 KE F+ K+ T + V KS H +R AT + Sbjct: 206 RSSVVSVGAKEFVFLLKSGGKIYETLVYRVINHYFGLVSSKVKKSPHILRHTFATHLLNK 265 Query: 301 GATAHELMATYGWKTVDQAETYTK 324 GA + + G ++ + YT Sbjct: 266 GADLNSVKELLGHASLASTQVYTH 289 >gi|324325058|gb|ADY20318.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar finitimus YBT-020] Length = 385 Score = 119 bits (298), Expect = 6e-25, Method: Composition-based stats. Identities = 40/357 (11%), Positives = 96/357 (26%), Gaps = 49/357 (13%) Query: 15 RTRHGKIIYYFRKGH-GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 R R+ K Y R G+ T A ++A + + + T Sbjct: 5 RKRNDKWEYRIRYKEMGKYKETSRGGFKTKKEAQLAA-AKVEERIANGGNIQDNKVTFNE 63 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR--KHTP 130 + E+ + G+++ + +E I+ G+ +++T + + + K++ Sbjct: 64 YMYEWLNTFKKGNVSPRTYTVYEKNIRLHILPAFGELKLKELTRIKYQKFINNLLEKYSK 123 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-- 188 + +M AV + + + + + + + + Sbjct: 124 KTVETINVTMHHALDTAVNELGILEKNPTTKIKLRTNHINPKQDEIKCYDIDELQQFLNY 183 Query: 189 ------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-------------------- 222 G + F FL +GLR + + + Sbjct: 184 ILKEKGGFKYYSLFMFLSRTGLRIGECLALQWEDIDFEEQKLFVNKTLLSTKRNEGIIFG 243 Query: 223 ----------SIKTQKTGTIITVELPDGFMKLLA---MTPIGKETFFINNDKQKMNATQF 269 T + + + ++L F ++ ++ + Sbjct: 244 PPKNKSSKRTISIDPSTMSHLKKMKLEQNKQILKNGKYYKDHNFIFTHEDNSCMLHPSTL 303 Query: 270 SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324 + K + HG R A +GA + G ++D Y Sbjct: 304 KF-LQQACKKGNFKYITLHGFRHTHAVHLLQSGANLKYVSERLGHSSIDMTANVYLH 359 >gi|300087795|ref|YP_003758317.1| integrase family protein [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527528|gb|ADJ25996.1| integrase family protein [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 328 Score = 119 bits (298), Expect = 6e-25, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 44/301 (14%) Query: 74 LISEYRKSAHWG-SLAVNSRISFESYF---------DQIIRKSGDFDYR---KITTKHIR 120 +Y +L+ + ++++ + + IR Sbjct: 13 YFDDYLIHLGTELNLSPRTIRNYKNDIIGNQQKGEPHGFFQYLEQHRLSFPSDVDKYVIR 72 Query: 121 SGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP---------KRKT 168 + SS ++ L+++R LF++ +R+E + +P + K Sbjct: 73 GYIAWLLEQGVVKSSVVRKLSAIRSLFRYLLREEIITESPLPVTRKHGGRLSAFSIKLDK 132 Query: 169 EGIRPWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 T ++M++ G + + E + +GLR S+ V + + Sbjct: 133 RLPSFLTVDEMERLLEAPETSKPVGLRDKAIMEMIYAAGLRISELSDIKVSQVDYYSREL 192 Query: 225 KTQKT-GTIITVELPDGFMKL-----------LAMTPIGKETFFINNDKQKMNATQFSIW 272 + V + LA ++ F+N ++ Sbjct: 193 RVTGKGQKERLVIIGQPAADAVKKYLEKARPKLAKAERATDSLFLNYRGGSLSVRSMQKL 252 Query: 273 FKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRI 329 A AG+ H +R AT D GA + G ++ + YT + ++ Sbjct: 253 ILRYARIAGIRQEVHPHLLRHSFATHLLDGGADLRVVQELLGHSSLSTTQIYTHVSRNQA 312 Query: 330 R 330 R Sbjct: 313 R 313 >gi|255020750|ref|ZP_05292809.1| Site-specific recombinase XerD [Acidithiobacillus caldus ATCC 51756] gi|254969812|gb|EET27315.1| Site-specific recombinase XerD [Acidithiobacillus caldus ATCC 51756] Length = 308 Score = 119 bits (298), Expect = 6e-25, Method: Composition-based stats. Identities = 49/296 (16%), Positives = 94/296 (31%), Gaps = 24/296 (8%) Query: 59 EYINSPRKKPTTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSG--DFDYRKIT 115 R + ++ + +LA NS ++ + R Sbjct: 3 ATATPGRAARDPVDEDLARFLDHLWLEGNLAANSLEAYSRDLRLLATYLAASQRRLRDAD 62 Query: 116 TKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 + + R S + L+S+R + +A R+ + +P S++ Sbjct: 63 AADLSLFLAQRLQGGAALRSVARQLSSLRRFYAFAQREGWRGDDPSASLQHLHIGRHLPA 122 Query: 173 PWTKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQ 227 ++ ++ + G + E L +GLR S+ L + Sbjct: 123 VPSEGEVDALLAAPDRRTVLGLRDAAMLETLYATGLRVSELVGLLCSQLDLEAGVVLTLG 182 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK----------MNATQFSIWFKAKA 277 K + + + ++ L + + + M+ +F KA A Sbjct: 183 KGSKERLIPVGEVALETLHRYLREARGALLGHKQSPALFLTVRGEAMSRQRFWQTIKAHA 242 Query: 278 TKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 TKAG+ S H +R AT D GA + G ++ E YT A + RL Sbjct: 243 TKAGIRSAFSPHSLRHAFATHLLDHGADLRSVQLMLGHAQLNTTEIYTHIA-QARL 297 >gi|224827079|ref|ZP_03700176.1| integrase family protein [Lutiella nitroferrum 2002] gi|224600745|gb|EEG06931.1| integrase family protein [Lutiella nitroferrum 2002] Length = 330 Score = 119 bits (298), Expect = 6e-25, Method: Composition-based stats. Identities = 47/309 (15%), Positives = 91/309 (29%), Gaps = 23/309 (7%) Query: 28 GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87 G+R R +P +S + A+ + + + R+ TL LI + + Sbjct: 19 RGGKRFRKTFPLKSEAL-AWEAWVKSQVAQSPEWEPERRDLRTLAELIELWYQHHGCNLR 77 Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF---LTSMRVLF 144 + + G+ + + + R + +A +R +F Sbjct: 78 SA---ADTLRRLLAMAEAMGNPVADRFSAEDFAKYRAQRLESGVTANNMNREHAYLRSVF 134 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR---LAFEFLLY 201 R L++ R + E W D Q E + + L + L Sbjct: 135 NELKRLGLWKKENPLAMVRQFKIPEKELSWLTVDQIQTLLAELENCRNKDALLVAKICLS 194 Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261 +G R ++ L+N K+G TV + +G L +G Sbjct: 195 TGARWGEAEGLRKSQLRNQSLQFTGTKSGKNRTVPVAEGLYDELKAKDVGSTDRLFQYC- 253 Query: 262 QKMNATQFSIWFKAKATKAGV----NKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317 F+ + G+ + H +R A+ G L G +++ Sbjct: 254 --------WGAFRDAVERCGLVLPDGQMTHVLRHTFASHFVMNGGNILVLQKILGHQSLT 305 Query: 318 QAETYTKGA 326 Y A Sbjct: 306 MTIRYAHLA 314 >gi|312875927|ref|ZP_07735917.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A] gi|311797408|gb|EFR13747.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A] Length = 325 Score = 119 bits (298), Expect = 6e-25, Method: Composition-based stats. Identities = 42/287 (14%), Positives = 90/287 (31%), Gaps = 45/287 (15%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDY-------------------------RKITTKHI 119 + + N+ + +R D + +T ++ Sbjct: 21 KNKSPNTIKEYYYDLRTFLRYLKAKDLNILSQIEKIEDLENIDVSNFEIEKLKTLTLSNL 80 Query: 120 RSGVESRKHT----PSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPW 174 P + + + S+R FK+ + + + NP +E PK R Sbjct: 81 YEYFSFLATRFNNGPYARARKVASIRSFFKYLYSKAKLIPDNPAKDLESPKLGKRNPRYL 140 Query: 175 TKEDMQQFKSFWS--EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 T ++ ++ S + L GLR S+ + +++++ I + Sbjct: 141 TLDESKKLLSSIDGENKERDFAIITLFLNCGLRLSELVNINLSDIKDDMLRIVGKGN-KE 199 Query: 233 ITVELPDGFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGV-- 282 + L + + T F++ K++++ + AG+ Sbjct: 200 RIIYLNKACKDAIENYLKVRPTEGVKDKDALFLSERKKRISRRTVQYIVEKYVKMAGINQ 259 Query: 283 -NKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD 327 SAH +R +AT+ G L G +++ E YT D Sbjct: 260 KKISAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVND 306 >gi|260892325|ref|YP_003238422.1| integrase family protein [Ammonifex degensii KC4] gi|260864466|gb|ACX51572.1| integrase family protein [Ammonifex degensii KC4] Length = 414 Score = 119 bits (298), Expect = 6e-25, Method: Composition-based stats. Identities = 52/354 (14%), Positives = 103/354 (29%), Gaps = 45/354 (12%) Query: 29 HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA 88 GR +R + + + LT + + TL ++ + ++ G L Sbjct: 60 DGRPVRKSFYART--REEAVKKLTQALHQASLGVLTAPARLTLGEWLATWLETYKKGKLR 117 Query: 89 VNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL---TSMRVLF 144 + ++E+ I+ G R +T +++ S SA + Sbjct: 118 PTTLANYETVIRAYILPSLGSVPLRSVTPASLQALYNSLSARGLSARTVRLVHVVLNACL 177 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204 K AV+ + NP + E PK K + + + G + AF L +GL Sbjct: 178 KQAVKNGLLVRNPAEATEPPKLKRRVPVRPLAREEVEAFLKAARGERLYPAFALALKTGL 237 Query: 205 RCSDSCRAGVQHLQNNIFSIK----------------------TQKTGTIITVELPDGFM 242 R + + + ++ + + TV L + Sbjct: 238 RRGEVLGLKWEDVDLERGVLRVRRSLVEAKDPETGKVRLVFQEPKTEKSRRTVPLTRDVV 297 Query: 243 KLLAMTPIGKETF--------------FINNDKQKMNATQFSIWFKAKATKAGVN-KSAH 287 LL + F + + F F + KAG+ H Sbjct: 298 ALLKSHKARQNEEKLYFGEAYEDNGLVFCTELGKPIWPRNFLRAFHSVLKKAGLERHRFH 357 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGA-DRIRLGIKNSRRI 339 +R AT+ +G + G + + Y + D + + Sbjct: 358 ALRHTFATLLLASGEELKNVQELLGHERISTTADVYAEVLEDAKKKAVTRLDAF 411 >gi|152988673|ref|YP_001351339.1| site-specific tyrosine recombinase XerC [Pseudomonas aeruginosa PA7] gi|166918894|sp|A6VE54|XERC_PSEA7 RecName: Full=Tyrosine recombinase xerC gi|150963831|gb|ABR85856.1| tyrosine recombinase XerC [Pseudomonas aeruginosa PA7] Length = 303 Score = 119 bits (298), Expect = 6e-25, Method: Composition-based stats. Identities = 36/278 (12%), Positives = 91/278 (32%), Gaps = 21/278 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVESRKHTP 130 + + + ++ ++ ++ +I+ K+G D+ + T+ +R+ V Sbjct: 5 LDAFLEHLRSERQVSAHTLDGYQRDLLKILALAEKAGLTDWNALDTRTLRTFVARLHQQG 64 Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S + L++ R +++ +R+ +P + PK + R + Q Sbjct: 65 QSSRSLARLLSATRGFYQYLLREGRCRHDPANGLSAPKSPRKLPRTLDADRALQLLDGAV 124 Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 E + + E SGLR S+ ++ L ++ + + + + Sbjct: 125 EDDFIARRDQALLELFYSSGLRLSELVGLDLEWLDLKEGLVRVRGKGNKVRELPVGKAAR 184 Query: 243 KLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSA 294 + L FI +++ + + + G + H +R A Sbjct: 185 QALEAWLPLRAQATPEDGAVFIGRGGKRLTPRAVQLRVRQAGVRELGQHLHPHMLRHSFA 244 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 + ++ + G + + YT D L Sbjct: 245 SHLLESSGDLRAVQELLGHADIATTQIYTH-LDFQHLA 281 >gi|53712683|ref|YP_098675.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] gi|52215548|dbj|BAD48141.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] Length = 383 Score = 119 bits (298), Expect = 6e-25, Method: Composition-based stats. Identities = 30/264 (11%), Positives = 79/264 (29%), Gaps = 15/264 (5%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSA 133 Y + + ++ ++ +YF + + ++ I + +K + S Sbjct: 111 YLELLEQKRYSPSTVKTYRAYFSDFMEYHKGRNIDRLKVPDINKYILYLVNEKKISVSQQ 170 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193 + +++ + + + + R K +K ++++ + Sbjct: 171 NMRINAIKF---YYEQVKGGKRQYYGGITRAKEYKSLPEVLSKNEIKRIL-AQISNIKHH 226 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252 + +GLR S+ Q + + S++ L ++ L Sbjct: 227 CMISLVYSAGLRRSELLNLTPQDINSETMSVRIMGKGKKCRYSLLSPKLLEELRHYFREY 286 Query: 253 ETFFINN----DKQKMNATQFSIWFKAKATKAGVNKSAH--GVRKFSATISADAGATAHE 306 ++ +A+ K A +AG+ H +R AT + G H Sbjct: 287 RPQKWLFEGETPGEQYSASALVKVLKEAAHRAGIKHRVHVHMLRHSFATHLLEQGTDLHT 346 Query: 307 LMATYGWKTVDQAETYTKGADRIR 330 + G + Y + + Sbjct: 347 IQELLGHNDIKTTTIYLHVSSAHK 370 >gi|56708541|ref|YP_170437.1| integrase/recombinase XerC [Francisella tularensis subsp. tularensis SCHU S4] gi|89255722|ref|YP_513083.1| integrase/recombinase XerC [Francisella tularensis subsp. holarctica LVS] gi|110671012|ref|YP_667569.1| integrase/recombinase XerC [Francisella tularensis subsp. tularensis FSC198] gi|115314216|ref|YP_762939.1| integrase/recombinase XerC [Francisella tularensis subsp. holarctica OSU18] gi|156501676|ref|YP_001427741.1| phage integrase family protein [Francisella tularensis subsp. holarctica FTNF002-00] gi|224457717|ref|ZP_03666190.1| phage integrase family protein [Francisella tularensis subsp. tularensis MA00-2987] gi|254367099|ref|ZP_04983133.1| integrase/recombinase xerC [Francisella tularensis subsp. holarctica 257] gi|254371168|ref|ZP_04987170.1| site-specific recombinase [Francisella tularensis subsp. tularensis FSC033] gi|254875393|ref|ZP_05248103.1| integrase/recombinase xerC [Francisella tularensis subsp. tularensis MA00-2987] gi|290953429|ref|ZP_06558050.1| integrase/recombinase XerC [Francisella tularensis subsp. holarctica URFT1] gi|295313310|ref|ZP_06803933.1| integrase/recombinase XerC [Francisella tularensis subsp. holarctica URFT1] gi|56605033|emb|CAG46136.1| Integrase/recombinase XerC [Francisella tularensis subsp. tularensis SCHU S4] gi|89143553|emb|CAJ78731.1| Integrase/recombinase XerC [Francisella tularensis subsp. holarctica LVS] gi|110321345|emb|CAL09519.1| Integrase/recombinase XerC [Francisella tularensis subsp. tularensis FSC198] gi|115129115|gb|ABI82302.1| integrase/recombinase XerC [Francisella tularensis subsp. holarctica OSU18] gi|134252923|gb|EBA52017.1| integrase/recombinase xerC [Francisella tularensis subsp. holarctica 257] gi|151569408|gb|EDN35062.1| site-specific recombinase [Francisella tularensis subsp. tularensis FSC033] gi|156252279|gb|ABU60785.1| phage integrase family protein [Francisella tularensis subsp. holarctica FTNF002-00] gi|254841392|gb|EET19828.1| integrase/recombinase xerC [Francisella tularensis subsp. tularensis MA00-2987] gi|282159761|gb|ADA79152.1| integrase/recombinase XerC [Francisella tularensis subsp. tularensis NE061598] Length = 292 Score = 119 bits (298), Expect = 6e-25, Method: Composition-based stats. Identities = 31/255 (12%), Positives = 88/255 (34%), Gaps = 15/255 (5%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMR 141 + + + +++ Q+ + D + +T I ++ ++P + + L+S+R Sbjct: 18 KNYSQETINNYQRDLLQLNQALSDKNIISLTHSDILIWIKKLHAQGNSPKTLQRKLSSVR 77 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRLAFEF 198 F + + E V+ NP ++ PK + +++ + F+ Sbjct: 78 SFFNFLINSEIVSQNPANGIKAPKDSKRLPKVVNTDELAYLLDINPSNDIEARDIACFDL 137 Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFI 257 L G+R S+ ++ + + +I+ V + L +++ Sbjct: 138 LYSCGIRLSELSSVELKDISISQKNIRVTGKGNKQRIVYFGTKTLSNLNRWLKIRDSLKP 197 Query: 258 NNDKQKMNATQFSIWFKAKATKAGV--------NKSAHGVRKFSATISADAGATAHELMA 309 ++D ++ + ++ + + + H +R A+ D+ + Sbjct: 198 SSDYLFISRDGKHLTNRSIQKRLEIFAQKYASRHIHPHMLRHSFASHVLDSSKDLLAVKD 257 Query: 310 TYGWKTVDQAETYTK 324 G + + YT Sbjct: 258 LLGHADISSTQIYTH 272 >gi|158426110|ref|YP_001527402.1| tyrosine recombinase [Azorhizobium caulinodans ORS 571] gi|158332999|dbj|BAF90484.1| tyrosine recombinase [Azorhizobium caulinodans ORS 571] Length = 306 Score = 119 bits (298), Expect = 6e-25, Method: Composition-based stats. Identities = 41/275 (14%), Positives = 81/275 (29%), Gaps = 30/275 (10%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHTP---SSAIQFLTS 139 + ++ ++ D TT IR+ + ++ + L++ Sbjct: 18 RGASRHTLDAYGRDLADFEDFLSVRDHGIDAATTDDIRAYLAELTDRGLKATTVARRLSA 77 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--------- 190 +R L+++ + +P +E PKR + + + + + + Sbjct: 78 IRQLYRFLYAEGRRGDDPAAVLEGPKRGRPLPKVLNVDQVTRLIDTAHDRAGEDVSSPER 137 Query: 191 --QPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246 + R+ L +GLR S+ + + T K V L + Sbjct: 138 LRRLRVVCLVELLYATGLRISELVSLPAAAARARDVIMVTGKGSKERMVPLSGPAKAAMT 197 Query: 247 MT---------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSA 294 + K F + + + K A AGV S H +R A Sbjct: 198 AYLAARAESGLAVSKWLFPTAAESGHLTRQHAARELKDLAVAAGVPPQALSPHVLRHAFA 257 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + GA + G V + YT D Sbjct: 258 SHLLAHGADLRIVQTLLGHADVSTTQIYTHILDER 292 >gi|330992094|ref|ZP_08316043.1| Shufflon-specific DNA recombinase [Gluconacetobacter sp. SXCC-1] gi|329761115|gb|EGG77610.1| Shufflon-specific DNA recombinase [Gluconacetobacter sp. SXCC-1] Length = 393 Score = 119 bits (298), Expect = 6e-25, Method: Composition-based stats. Identities = 44/325 (13%), Positives = 96/325 (29%), Gaps = 16/325 (4%) Query: 10 FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYM-SALTGSTPKREYINSPRKKP 68 +V R +G+ Y HG + A A + Sbjct: 45 YVVHYR-ANGRFRRYTIGHHGPW-----TADKARDEAIKILARVKDGNDPNTERGEERTS 98 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSGVESRK 127 T+ + + L ++ ++ D I +K G +T + + + + Sbjct: 99 PTISQFCKTFIERHVKTHLKSTTQAEYQRAIDLFIIKKIGSRMVATLTHSDVVAFHHAYR 158 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 H P A + L + +F A+ N + K + + + Q Sbjct: 159 HIPYQANRTLGVLSKMFSLAILWGVRTDNVNPCRGVKRYKEQKRERYLTTEEHQRLGKAL 218 Query: 188 EGSQPRL-----AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242 + + + AF+ LL +G R + R +++ + I+ + Sbjct: 219 DDGRSAMPEAVNAFQLLLLTGCRLREIQRLKWEYVFLDEGIIRLPDSKNGARTVQLGESA 278 Query: 243 KLLAMTPIGKETFFINNDKQKM--NATQFSIWFKAKATKAGV-NKSAHGVRKFSATISAD 299 L E +K + T ++ +AG+ + H +R A+ + + Sbjct: 279 IGLLGDITRVEGNPYVITGRKDGGHLTDLEKPWRRIRKEAGLHDVRIHDLRHSFASDALE 338 Query: 300 AGATAHELMATYGWKTVDQAETYTK 324 G + G + + Y Sbjct: 339 LGEDLVMIGKLLGHRDLKSTARYAH 363 >gi|229918620|ref|YP_002887266.1| integrase family protein [Exiguobacterium sp. AT1b] gi|229470049|gb|ACQ71821.1| integrase family protein [Exiguobacterium sp. AT1b] Length = 293 Score = 119 bits (298), Expect = 6e-25, Method: Composition-based stats. Identities = 41/271 (15%), Positives = 89/271 (32%), Gaps = 20/271 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMR 141 L+ +++ S+E DQ Y T + + ++ S+ Q ++ + Sbjct: 18 RRLSPHTKRSYEQTLDQYAAYCQSTHQDPYDAQTARRYLYVLYEKQLAASTVSQKVSCFK 77 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-----QPRLAF 196 K+ R++ K+++ E Q ++ + + Sbjct: 78 QFGKFMAREQGGEPLFHDLTSPKKKQSLPTFAVPTEVEQLLEAASRQDDPFLQARDVAII 137 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLAMTP------ 249 E L +G+R ++ C + F K V + ++ L Sbjct: 138 EVLYGTGIRVAELCGMNLSSFDEVLSFVHVMGKGKKERYVPIGQYAVQALQRYIELRKGV 197 Query: 250 --IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAH 305 + F++ +M Q K +GV+K + H +R AT + GA Sbjct: 198 GLPTETALFLSQKGNRMTTDQIRYVMKRLRKDSGVHKPLTPHSLRHSFATDLLERGADLR 257 Query: 306 ELMATYGWKTVDQAETYTKGA-DRIRLGIKN 335 + G +++ YT + +R+R + Sbjct: 258 AVQELLGHESLSTTGRYTHVSTERLRSIYQA 288 >gi|306827181|ref|ZP_07460471.1| integrase [Streptococcus pyogenes ATCC 10782] gi|304430637|gb|EFM33656.1| integrase [Streptococcus pyogenes ATCC 10782] Length = 362 Score = 119 bits (298), Expect = 6e-25, Method: Composition-based stats. Identities = 50/345 (14%), Positives = 102/345 (29%), Gaps = 33/345 (9%) Query: 11 VTKERTRHGKIIY----YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 + + +G+ Y Y +G+R + T +A + ++ P+ Sbjct: 3 IKSYKKENGETAYKFLLYAGYVNGKRKYIRREGFKT----KQAARETLISLQAELDKPKS 58 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 T L ++ K + + I+ K I I+ E Sbjct: 59 -SMTFGALTDQWLKEYEKTVQGSTYLKTERNINKHILPKLDKVKIGDINPLLIQRLTEEW 117 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-----IRPWTKEDMQQ 181 + + L +R + AVR Y+ NP L + PK K + + Sbjct: 118 CNDLKYGGKILGLVRNILNLAVRYGYINNNPALPITPPKIKRKRKMNNNFYTLDQLKQFL 177 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--------------FSIKTQ 227 ++ + F L ++G+R + L N T+ Sbjct: 178 ELVEKTDNIEKIALFRLLAFTGIRKGELLALTWDDLNGNTLSINKAVTRTQVGLEIDVTK 237 Query: 228 KTGTIITVELPDGFMKLL---AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284 + + L D +++L T F + M + W + + Sbjct: 238 TKSSDRLISLDDETLEILLELHETFPTSTLMFQSESGGIMTPSLPRKWLLQIIKGTDLPQ 297 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGAD 327 + HG R A++ ++G + ++ G + YT Sbjct: 298 ITIHGFRHTHASLLFESGLSLKQVQHRLGHGDLQTTMNVYTHITQ 342 >gi|294142606|ref|YP_003558584.1| integrase/recombinase XerC [Shewanella violacea DSS12] gi|293329075|dbj|BAJ03806.1| integrase/recombinase XerC [Shewanella violacea DSS12] Length = 308 Score = 119 bits (298), Expect = 6e-25, Method: Composition-based stats. Identities = 30/281 (10%), Positives = 83/281 (29%), Gaps = 23/281 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRK 127 ++ L+ ++ ++ ++ K + +I+ + I+ + Sbjct: 5 WFKQFESHLSSERQLSAHTVRNYLYELHRVTDKLDASASFPISWSEISHEQIQHVLGQLH 64 Query: 128 H---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 +P S L++++ + + + + NP ++ PK+ + + + Sbjct: 65 RQGLSPRSLSLTLSAVKQFCDFLLGEGVINANPAKNLSAPKQNKPLPKNMDLDSVTHLLE 124 Query: 185 FWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELPDG 240 ++ + + E SGLR ++ V ++ + K V + Sbjct: 125 IDADDPLSVRDKAIMELFYSSGLRLAELAALDVLDIRFADRQVKVLGKGSKERIVPVGRC 184 Query: 241 FMKLLAMTPIGKETFFINNDKQKMN-------ATQFSIWFKAKAT--KAGVNKSAHGVRK 291 + + +E ++ + + H +R Sbjct: 185 AIDAIQAWLTFREAIPCQDEALFVTAKGNRLAHRSIQARLAKWGQEQALNMRVHPHKLRH 244 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 AT ++ A + G + + YT D L Sbjct: 245 SFATHMLESSADLRAVQELLGHANLSTTQIYT-SLDFQHLA 284 >gi|87199919|ref|YP_497176.1| phage integrase [Novosphingobium aromaticivorans DSM 12444] gi|87135600|gb|ABD26342.1| phage integrase [Novosphingobium aromaticivorans DSM 12444] Length = 293 Score = 119 bits (298), Expect = 6e-25, Method: Composition-based stats. Identities = 41/299 (13%), Positives = 93/299 (31%), Gaps = 29/299 (9%) Query: 68 PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI-RSGVES 125 T++ + + A N+ ++ G + + R + Sbjct: 2 RRTVEPAVENFLAMLAAQRGAAANTLAAYRRDLAGAAEVIG--PLATAGREDLARLAIAW 59 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 SS + +++R + + V + +P ++ RPK + R ++ Sbjct: 60 SDLAASSLARKSSALRQFYGFLVDEGMREEDPSSALPRPKTRRPLPRLLDHGQVEALFRT 119 Query: 186 WSEGSQ--------PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-----KTGTI 232 E ++ E L SGLR ++ + + + + + Sbjct: 120 AEEDARSGTPEAARMLALLELLYGSGLRATELVSLPLAAIPRDAPLLTITGKGGVQRMVP 179 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289 ++ L G F + ++ + + A +AG++ S H + Sbjct: 180 VSARATRALADWLVARGKGGRFVFPSPRGGHLSRVRLFQLLRDLALRAGLDPEKVSPHVL 239 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 R AT + GA L G + + YT ++ R+ ++V+ P Sbjct: 240 RHAFATHLLEGGADLRVLQTLLGHADIATTQIYTHV---------DAARLVTLVNERHP 289 >gi|167751366|ref|ZP_02423493.1| hypothetical protein EUBSIR_02352 [Eubacterium siraeum DSM 15702] gi|167655612|gb|EDR99741.1| hypothetical protein EUBSIR_02352 [Eubacterium siraeum DSM 15702] Length = 476 Score = 119 bits (298), Expect = 6e-25, Method: Composition-based stats. Identities = 49/384 (12%), Positives = 116/384 (30%), Gaps = 50/384 (13%) Query: 14 ERTRHGKIIYYFRKGHG-----------RRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62 ++ ++G+ RK + + + + + L + + Sbjct: 6 KKRKNGEGTLRLRKDGRWEGRIVVGYNEKSLPITKCVTAKTKTECSTKLEALKEQYGRSS 65 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRS 121 K I + ++ +L + +R +E ++ II + G +++ ++ Sbjct: 66 DKIKPDMPFGDWIDFWYQTYCRHTLRITTRTDYENRIYNHIIPEIGKIPLNRMSQSDLQQ 125 Query: 122 GVES--------------RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167 + + + + R + AV+ + NP + + P +K Sbjct: 126 FYAKEKTDGRKLHAKTYGKGLSDRTIRGIHANCRTALQRAVQDGLIRTNPAVCCKLPPKK 185 Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227 ++ T+ ++ +F E L F L +G+R + L ++ + Sbjct: 186 AREMQVLTQNEILRFLHQAKEEGYYEL-FLLELGTGMRRGEILALKWSDLNFATGELRIE 244 Query: 228 KTGTIITVELPDGF--------------------MKLLAMTPIGKETFFINNDKQKMNAT 267 + II E+ + ++ + N + Sbjct: 245 RQVYIIKAEVIISAPKTKASIRTVILPPSLLKTLVAYKETVDSEWMFPSPTDNGRPRNPS 304 Query: 268 QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325 + +AG K H +R AT++ + G L A G + + Y+ Sbjct: 305 SVRKRLQLILERAGCKKVRFHDLRHTFATMALENGMDIKTLSAMIGHVSAETTLNIYSHI 364 Query: 326 AD-RIRLGIKNSRRISSVVDSDDP 348 D R + R D+ P Sbjct: 365 TDTMQRQAAVHIDRKIGGTDARMP 388 >gi|329890948|ref|ZP_08269291.1| phage integrase family protein [Brevundimonas diminuta ATCC 11568] gi|328846249|gb|EGF95813.1| phage integrase family protein [Brevundimonas diminuta ATCC 11568] Length = 304 Score = 119 bits (298), Expect = 6e-25, Method: Composition-based stats. Identities = 47/298 (15%), Positives = 84/298 (28%), Gaps = 31/298 (10%) Query: 69 TTLKWLISEYRKSAHW-GSLAVNSRISF----ESYFDQIIRKSGD----FDYRKITTKHI 119 T + ++ + + L+ + ++ Y + R G D +T Sbjct: 1 MTSQDALAAWLEHLAHERRLSPRTLEAYGHIGRLYLAFLERHRGGPQSAADLGSVTAAEA 60 Query: 120 RSGVESRKHT-----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP- 173 R+ + R+ S Q L ++R + R+ VA V PK K RP Sbjct: 61 RAHLAERRSGDRPLNARSLSQTLAAIRGFHAFLDRRLGVATPQLALVRGPKVKPSLPRPV 120 Query: 174 -------WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226 E E ++ R L GLR S++ T Sbjct: 121 SEDQAKGLLHEPEADPDMEPWEAARDRAVLTLLYGCGLRISEALSLKRSDAPLPESLRIT 180 Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATK 279 K V + + + F ++A + + Sbjct: 181 GKGDKTRMVPVLPEVREATQAYLALQPFVIDADQALFRARRGGPLSARHVQATVQRLRGR 240 Query: 280 AGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 G+ + H +R AT AGA + G ++ + YT+ L Sbjct: 241 LGLPASATPHALRHSFATHLLGAGADLRSIQELLGHASLSTTQKYTQVDAARLLAAYA 298 >gi|320104524|ref|YP_004180115.1| integrase family protein [Isosphaera pallida ATCC 43644] gi|319751806|gb|ADV63566.1| integrase family protein [Isosphaera pallida ATCC 43644] Length = 442 Score = 119 bits (298), Expect = 6e-25, Method: Composition-based stats. Identities = 50/323 (15%), Positives = 102/323 (31%), Gaps = 31/323 (9%) Query: 39 HESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFES 97 S + + TL LI E+ S ++ ++ +++ Sbjct: 110 GGSKAQARGSRKREPNGRRTPPGARDSSPKPTLHPLIVEFVTSLERNREVSEHTLRAYQE 169 Query: 98 YFDQIIRKSG--------------DFDYRKITT-KHIRSGVESRKHTPSSAIQFLTSMRV 142 R D + S + + + P + + L S+R Sbjct: 170 DLGLFSRYLAESQPGCASSDREPIDPRLADARRLRGYSSWLSRQGYAPGTIARRLASLRT 229 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEF 198 ++ + ++ +P ++ PK RP + +++ S G + R E Sbjct: 230 FYRHLRKHGHLEGDPTAAMRNPKPARRLPRPLRLDQIERLLEAVPTDQSLGVRDRAILEL 289 Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-----ITVELPDGFMKLLAMTPIGK- 252 L GLR + ++ L ++ + G I + + + L Sbjct: 290 LYGGGLRVGELVALDLEDLDLERNVVRVRGKGRRERLTPIGKQAAEWVRRWLTHRRPDHG 349 Query: 253 --ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELM 308 F+N +++ A F+ A G++ + H +R AT D GA + Sbjct: 350 GEHALFLNRYGRRLTARSVDRLFETHARGLGLDADATPHSLRHSFATHLLDRGADLRSVQ 409 Query: 309 ATYGWKTVDQAETYTKGADRIRL 331 G + + + YT R RL Sbjct: 410 ELLGHRRLTTTQIYT-QVTRERL 431 >gi|167464469|ref|ZP_02329558.1| prophage LambdaBa04, site-specific recombinase, phage integrase family protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 379 Score = 119 bits (298), Expect = 6e-25, Method: Composition-based stats. Identities = 53/373 (14%), Positives = 113/373 (30%), Gaps = 40/373 (10%) Query: 6 RLPPFVTKERTRHG-KIIYYFRK---GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61 + PP + R G K Y + G+R + T A +A+ + Sbjct: 11 KCPP--ERRRCTCGAKWYYRYDITDPKTGKRKQKEVGGFRTKEEAQEAAVRIQSELLN-G 67 Query: 62 NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIR 120 T+ + ++ ++ +A N+ ++ I G +T H++ Sbjct: 68 TYVEPTKLTVGEFLLDFVENTLKYEVAPNTYEQRMTFVKNHIQPNIGSLRLTDLTPNHVQ 127 Query: 121 SGVESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTK 176 S + + + F AV+ ++ NP V++P RK ++ WT Sbjct: 128 KFYNSLREHYGAGYVQNIGNLLSKAFTQAVKWNMISRNPIPLVKKPSLSRKNTKMKTWTV 187 Query: 177 EDMQQFKSFWSEGSQ-PRLAFEFLLYSGLRCSDSCRAGVQHLQNNI----FSIKTQKTGT 231 ED ++F + +G + + F L SG+R + + Sbjct: 188 EDQRKFLDYAKDGPKLYYVIFLLALTSGMRKGELLGLIWDDVDTKKGIVSIKRTIVYAQR 247 Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKM-------------------NATQFSIW 272 + ++ + + + T + + Sbjct: 248 KLYLKDMPKTESAIRTIQLPEPTIKVMKQWKLECPANELNLLFPSPKTKGILYPNSLDKQ 307 Query: 273 FKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330 AGV + HG+R AT + + G T+ TY+ Sbjct: 308 LAKTIKGAGVPEITMHGLRHTFATTLLGSNVNPKIVQEMLGHATIKTTMDTYSHVLPN-- 365 Query: 331 LGIKNSRRISSVV 343 + + ++ +V+ Sbjct: 366 MQKDAASQLGAVL 378 >gi|120600505|ref|YP_965079.1| tyrosine recombinase XerC [Shewanella sp. W3-18-1] gi|146294663|ref|YP_001185087.1| tyrosine recombinase XerC [Shewanella putrefaciens CN-32] gi|166918902|sp|A4YBF5|XERC_SHEPC RecName: Full=Tyrosine recombinase xerC gi|166918903|sp|A1RPD0|XERC_SHESW RecName: Full=Tyrosine recombinase xerC gi|120560598|gb|ABM26525.1| tyrosine recombinase XerC [Shewanella sp. W3-18-1] gi|145566353|gb|ABP77288.1| tyrosine recombinase XerC [Shewanella putrefaciens CN-32] gi|319427899|gb|ADV55973.1| tyrosine recombinase XerC [Shewanella putrefaciens 200] Length = 302 Score = 119 bits (298), Expect = 6e-25, Method: Composition-based stats. Identities = 33/274 (12%), Positives = 90/274 (32%), Gaps = 20/274 (7%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRKHTPS 131 Y S L+ ++ ++ +++ + + + + + + + +P Sbjct: 16 ERYLHSE--RQLSAHTVHNYLYELNRVSTLLPKDVTLLNVGREHWQQVLAKLHRKGLSPR 73 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS- 190 S L++++ ++ +R+ +A+NP + PK+ + + + Sbjct: 74 SLSLCLSAIKQWGEFLLREGMIAVNPAKGLSAPKQAKPLPKNMDVDSLTHLLEIEGTDPL 133 Query: 191 --QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM 247 + + E SGLR ++ + +Q ++ ++ K V + +K L Sbjct: 134 TLRDKAMMELFYSSGLRLAELAALNLSSVQYDLREVRVLGKGNKERIVPVGSYAIKALEA 193 Query: 248 TPIGKETFFINNDK-------QKMNATQFSIWFKAKAT--KAGVNKSAHGVRKFSATISA 298 + ++ + ++++ V H +R AT Sbjct: 194 WLVCRQQIPCEDCALFVTGKGRRLSHRSIQSRMAKWGQEQALSVRVHPHKLRHSFATHML 253 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 ++ A + G + + YT D L Sbjct: 254 ESSADLRAVQELLGHANLSTTQIYT-SLDFQHLA 286 >gi|163733501|ref|ZP_02140944.1| site-specific tyrosine recombinase XerC [Roseobacter litoralis Och 149] gi|161393289|gb|EDQ17615.1| site-specific tyrosine recombinase XerC [Roseobacter litoralis Och 149] Length = 306 Score = 119 bits (298), Expect = 6e-25, Method: Composition-based stats. Identities = 42/288 (14%), Positives = 83/288 (28%), Gaps = 29/288 (10%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSGV 123 + + A N+ I+++ + G I+ +R+ + Sbjct: 10 DALQNWLAHQRAIKGAAENTLIAYQGDVIDFLSFITAHKGAPQGLGALADISVTDMRAWM 69 Query: 124 ESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + T +A + L++++ +KW +E LS PK + + RP + + Sbjct: 70 AQTRETGVAARSLARKLSAVKAFYKWLALREGFEPTAVLSTRAPKFQKKLPRPLAPDAAR 129 Query: 181 Q-------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233 ++ L GLR S++ T K G Sbjct: 130 NLIDAIEIQSQHPWVCARDVAVVTLLWGCGLRISEALSLAAADAPLPATLRITGKGGKER 189 Query: 234 TVELPDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKAGVNKS- 285 V + + F + A + G+ + Sbjct: 190 IVPVLPAARDAVDAYVRMCPHPQTAEAPLFRAVRGGPLRPGTIQKVMAAARMQLGLPATA 249 Query: 286 -AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R AT +AG + G ++ + YT D +RL Sbjct: 250 TPHAMRHSFATHLLNAGGDLRAIQELLGHASLSTTQAYT-AVDTVRLM 296 >gi|303232676|ref|ZP_07319361.1| phage integrase, N-terminal SAM domain protein [Atopobium vaginae PB189-T1-4] gi|302481162|gb|EFL44237.1| phage integrase, N-terminal SAM domain protein [Atopobium vaginae PB189-T1-4] Length = 346 Score = 119 bits (298), Expect = 6e-25, Method: Composition-based stats. Identities = 52/300 (17%), Positives = 99/300 (33%), Gaps = 47/300 (15%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESRKHTP---SSAIQFLTS 139 +L+ N+ ++ D I Y IT + +R + S + + L++ Sbjct: 36 RNLSHNTLRAYSIDLDAYIAWVLARQYDALSITHRQLREYLASLSSRGYATRTINRHLSA 95 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLA 195 +R +KW V Q Y + ++ PK R D+ + + EG + R Sbjct: 96 IRSWYKWFVWQGYTTSDAPAALASPKNPKTLPRVLNHHDITTLFNAFDESTPEGVRDRCF 155 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPIGKET 254 E L +G R S++ + + + + I+ K + V + + L+ Sbjct: 156 VEVLYATGCRISEAAQLTLGDIDMHEAQIRLFGKGSKMRIVPVYKECLDELSEYITKARP 215 Query: 255 F----------------------------------FINNDKQKMNATQFSIWFKAKATKA 280 FI+ M+AT F + KA Sbjct: 216 RLLAARTATSRRRAAGKSAAVPTRGTAATGASNRLFISTRGNPMSATALRYVFDSYIEKA 275 Query: 281 GVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337 + S H +R AT GA + G ++ + YT + D ++ +K + Sbjct: 276 NLPATLSPHSMRHTFATDLLSGGADLRSVQELLGHSSLSTTQIYTHVSIDAMKRAVKQAH 335 >gi|309775337|ref|ZP_07670345.1| putative tyrosine recombinase XerD [Erysipelotrichaceae bacterium 3_1_53] gi|308916919|gb|EFP62651.1| putative tyrosine recombinase XerD [Erysipelotrichaceae bacterium 3_1_53] Length = 309 Score = 119 bits (298), Expect = 7e-25, Method: Composition-based stats. Identities = 35/286 (12%), Positives = 87/286 (30%), Gaps = 28/286 (9%) Query: 72 KWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKH 128 K ++++Y + L ++ +++ Q + +D +K + + + Sbjct: 7 KEIVNQYLQECSIAKELNAHTLKAYQIDLKQFLSFMELYSYDIQKESLHAYITHLHKTYQ 66 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI--------------RPW 174 P + + + S+ LF + V +++ NP + R+ + R + Sbjct: 67 KPKTIKRKIASINALFSYLVFHDFIETNPMSRLRTAFREPRLLPRTIPNSHLSSIFSRVY 126 Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--GTI 232 + + ++ E L +G+R S+ C + ++ Sbjct: 127 DEMKDCKTSYQRKVCTRNAAVLELLFSTGMRVSELCHVKDDEINLRERYVRIYGKGAKER 186 Query: 233 ITVELPDGFMKLLAMTPIGKE-------TFFINNDKQKMNATQFSIWFKAKATKAGVN-- 283 I +K+L + FFIN ++ + + Sbjct: 187 ILQIGNPDVLKILYSYRALFQKEIETSGYFFINKLGNPLSEQSVRLLIARYEKILKIPQH 246 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + H R AT + + G ++ + YT + Sbjct: 247 LTPHMFRHTFATQLLEEDVDIRYIQHILGHSSITTTQIYTHISSNK 292 >gi|327439442|dbj|BAK15807.1| integrase [Solibacillus silvestris StLB046] Length = 363 Score = 119 bits (298), Expect = 7e-25, Method: Composition-based stats. Identities = 49/356 (13%), Positives = 104/356 (29%), Gaps = 40/356 (11%) Query: 11 VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 V K++ R+ Y+ + +G++++ + L + + Sbjct: 3 VYKDKERN--TYYFITRINGKQVKRRGFKTKKEALLAEAQLENEGNVEQI--------IS 52 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR--- 126 +++ EY K +S S + I + I + Sbjct: 53 FEFIADEYMKWYKTRR-KESSFKKLRSVITVHLKPYFKKKALHTIRQRDIIKFHDHLIET 111 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 K + ++A + + LF +A++ EY NP V + K + D + Sbjct: 112 KLSAATAKKIHQILSALFNFAIKNEYTKDNPARVVGNIEMKENKHMNYWTLDEFKAFIKQ 171 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI------------KTQKTGTIIT 234 + F L YSG+R + + +I T+ + Sbjct: 172 VDNIVYHTLFMTLYYSGMRTGELVALTWSDIDFTNNTINVNKTLAGTKITTTKTESSTRI 231 Query: 235 VELPDGFMKLL----------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284 + +P+ M LL + M+ T ++ + V + Sbjct: 232 ITMPNHIMHLLGKLKLHQASKYGFEPKMNYCVFGKFTRYMSKTALDNNYRKYIELSDVKR 291 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLGIKNSR 337 H R A+ + G + A G V +TY+ + + + Sbjct: 292 IRLHDFRHSHASYLINKGVIISVVAARLGHANVSMTLDTYSHLYPSTEKEAVAHME 347 >gi|167585653|ref|ZP_02378041.1| site-specific tyrosine recombinase XerD [Burkholderia ubonensis Bu] Length = 315 Score = 119 bits (298), Expect = 7e-25, Method: Composition-based stats. Identities = 46/275 (16%), Positives = 86/275 (31%), Gaps = 26/275 (9%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSG---DFDYRKITTKHIRSGVESRKH-TPSSA 133 + + LA N+ ++ + D + + +R +S+ Sbjct: 35 WLEH----GLARNTLDAYRRDLALFAQWLAATHDASLDVADEMMVTGYIAARSDGKATSS 90 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--- 190 + L+ R + WAVR+ + +P L + K+ ++ ++ + Sbjct: 91 NRRLSVFRRYYGWAVREHRASADPTLRITSAKQAARFPSTLSEAQVEALLGAPDVDTPLG 150 Query: 191 -QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT 248 + R E + SGLR S+ + N ++ V + + Sbjct: 151 LRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGSKERLVPFGEVAHGWIERY 210 Query: 249 PIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296 F+ M QF K A +A V + S H +R AT Sbjct: 211 LRHARPALLGARAADALFVTARGDGMTRQQFWNIIKRHARQADVRAHLSPHTLRHAFATH 270 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 + GA + G + + YT A R RL Sbjct: 271 LLNHGADLRVVQMLLGHSDISTTQIYTHVA-RERL 304 >gi|190893726|ref|YP_001980268.1| tyrosine site-specific integrase/recombinase protein [Rhizobium etli CIAT 652] gi|190699005|gb|ACE93090.1| tyrosine site-specific integrase/recombinase protein [Rhizobium etli CIAT 652] Length = 311 Score = 119 bits (298), Expect = 7e-25, Method: Composition-based stats. Identities = 42/284 (14%), Positives = 86/284 (30%), Gaps = 30/284 (10%) Query: 77 EYRKS-AHWGSLAVNSRISFESYFDQIIRKS-GDF-------DYRKITTKHIRSGVESRK 127 + ++ A L+ ++ ++E Q + G D R++ R+ + +R+ Sbjct: 18 AWLENLARERRLSEHTLDAYERDTRQFLTFLTGHLAGPVTLSDIRELRPADFRAFLAARR 77 Query: 128 HTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ---- 180 S A + L +R L + ++ V ++ PK+ +P + Sbjct: 78 KQGSGARSLGRNLAGLRSLLRHLEKKGLVNAAGAAAIRSPKQPKSLPKPLSDTQAITVVS 137 Query: 181 ---QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236 Q ++ L GLR S++ L +++ V Sbjct: 138 NEAQLHDEPWIAARDAAVMTLLYGCGLRISEALDLVPADLPKGATTLRITGKGNKTRLVP 197 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-------FSIWFKAKATKAGVN--KSAH 287 L + + N+ A + + G+ + H Sbjct: 198 LLPVVFEAVEKYRALCPYHLENDAPLFRGARGGKLQAAIIQRAMQKLRSAFGLPETATPH 257 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +R AT G + G ++ + YT G D RL Sbjct: 258 ALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYT-GVDASRL 300 >gi|86139973|ref|ZP_01058538.1| tyrosine recombinase XerD [Roseobacter sp. MED193] gi|85823391|gb|EAQ43601.1| tyrosine recombinase XerD [Roseobacter sp. MED193] Length = 328 Score = 119 bits (298), Expect = 7e-25, Method: Composition-based stats. Identities = 47/309 (15%), Positives = 100/309 (32%), Gaps = 42/309 (13%) Query: 73 WLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSG---VESR 126 IS + + A N+ +++ D + + + I + + Sbjct: 9 QWISTFLDAQAAELGAARNTLLAYGRDLKDAASWLAHHDNRFSEAAREDIEAYLISCNAE 68 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 + ++ + L+++R L+ +A + + + NP + ++ P R + ++ + Sbjct: 69 GLSRATRARRLSALRQLYHFAFEEGWRSDNPAIQIKGPGRAKTLPKTLEVIEVDRLLDAA 128 Query: 186 ------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238 ++ + E L +G+R S+ V + + + K G V L Sbjct: 129 RQTGRKPADRLRNTCLMELLYATGMRVSELMSLPVAAARGDPNMLLVQGKGGKERMVPLS 188 Query: 239 DGFMKLLAMTPIGKET----------------FFINNDKQKMNATQFSIWFKAKATKAGV 282 + L + ++ F + + F + K A GV Sbjct: 189 PPAREALRAWLMQRDEADEDSQAKGNPGSKFLFPSRGKEGHLTRHWFYLLIKDLAVTGGV 248 Query: 283 N---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 + + H +R AT GA + A G + E YT D R+ Sbjct: 249 DPKKVTPHTLRHAFATHLLANGADLRAIQALLGHADIATTEIYTHVLD---------ARL 299 Query: 340 SSVVDSDDP 348 S +V P Sbjct: 300 SELVLQHHP 308 >gi|46143623|ref|ZP_00134812.2| COG4973: Site-specific recombinase XerC [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|190151161|ref|YP_001969686.1| tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303250058|ref|ZP_07336260.1| site-specific tyrosine recombinase XerC [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303253232|ref|ZP_07339381.1| site-specific tyrosine recombinase XerC [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|254799324|sp|B3GZ58|XERC_ACTP7 RecName: Full=Tyrosine recombinase xerC gi|189916292|gb|ACE62544.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302647914|gb|EFL78121.1| site-specific tyrosine recombinase XerC [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302651121|gb|EFL81275.1| site-specific tyrosine recombinase XerC [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 306 Score = 119 bits (298), Expect = 7e-25, Method: Composition-based stats. Identities = 39/281 (13%), Positives = 89/281 (31%), Gaps = 22/281 (7%) Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKI------TTKHIRSGVESRKHTPSSAIQFLTSMR 141 + ++ +++ + T + I + + S L ++R Sbjct: 26 SQHTLSNYQRQLLAVSDMLSQAGISTWQEVNSATVRWIIAQSNKQGLGAKSIALRLVALR 85 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRLAFEF 198 F + +RQE +++NP + ++ PK + E + Q + + E Sbjct: 86 QWFSYLIRQEKMSVNPAVGIKAPKASKRLPKNIDAEQIGQLLTSDSHEPSDLRDLAMMEL 145 Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKETFFI 257 + SGLR S+ + + ++ K V + ++ L + F Sbjct: 146 MYSSGLRLSELQGLDLGDMDLAGREVRLLGKGNKERIVPIGSKALEALNRWLAVRNQFKP 205 Query: 258 NNDKQ-------KMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELM 308 ++ +++ + + K G+ + H +R AT +A + Sbjct: 206 QDNAVFLNKRGGRLSHRSIQLVMQKWGEKQGLESHLHPHKLRHSFATHMLEASGDLRAVQ 265 Query: 309 ATYGWKTVDQAETYTKGADRIRLG--IKNSRRISSVVDSDD 347 G + + YT D L + + DD Sbjct: 266 ELLGHSNLATTQIYTH-LDFQHLAKIYDAAHPRAKRKKQDD 305 >gi|114327281|ref|YP_744438.1| integrase/recombinase xerD [Granulibacter bethesdensis CGDNIH1] gi|114315455|gb|ABI61515.1| integrase/recombinase xerD [Granulibacter bethesdensis CGDNIH1] Length = 290 Score = 119 bits (298), Expect = 7e-25, Method: Composition-based stats. Identities = 34/273 (12%), Positives = 85/273 (31%), Gaps = 14/273 (5%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRKH 128 I + + A N+ +++ + + + + + + Sbjct: 5 IESFLEMLAAERGAARNTLLAYGTDLRDWSGYAARHRVDPLHADEAALRGYLAAQSGAGN 64 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 P + + L+++R +++ + Q + +P ++ PK + + ++ Sbjct: 65 GPRTQSRRLSALRQFYRFLLEQGTRSDDPTALLDAPKLPRSLPKYLDEAEVDALLQAAPA 124 Query: 189 GSQPRLAFEFLLYSGLRCS-----DSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 A E L +GLR S + + ++ ++ Sbjct: 125 EPAAHAALEILYSTGLRVSEVLALPARAFRGDAPMMTVRGKGGRERMVPVSAAAISAVAA 184 Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADA 300 + + + F + + M F++ K A +AG++ S H +R A+ Sbjct: 185 MRSGAEQSRWLFPGRDPAKPMTRQGFALMLKRVALQAGLDPARVSPHVLRHCFASHLLAR 244 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 GA L G + + YT + Sbjct: 245 GADLRSLQMLLGHVDIATTQIYTHVLSERLRAL 277 >gi|319404836|emb|CBI78437.1| integrase/recombinase XerC [Bartonella rochalimae ATCC BAA-1498] Length = 321 Score = 119 bits (298), Expect = 7e-25, Method: Composition-based stats. Identities = 36/277 (12%), Positives = 83/277 (29%), Gaps = 30/277 (10%) Query: 78 YRKSA-HWGSLAVNSRISFESYFDQI----IRKSGDFD----YRKITTKHIRSGVESRK- 127 + +A+++ +++E Q + G + +R+ + R+ Sbjct: 28 WLDHLTQTRRMALHTAVAYERDTRQFLFFLCQHLGYQPTLDDLADLRVADLRAYLAYRRT 87 Query: 128 --HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK-------ED 178 + S + + S+R F + R++ V + V PK +P T ++ Sbjct: 88 QNISARSLSRNMASLRSFFNYLSREKLVNVPAAKLVRTPKHPKSLPKPLTIESALRIVKE 147 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVE 236 Q ++ ++ L G+R S++ + + K G + Sbjct: 148 ENQQETEPWIIARNTAILILLYGCGMRISEALALTPEQFADPSIKSLSVNGKGGKTRLIP 207 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQ-------KMNATQFSIWFKAKATKAGVNKS--AH 287 L K + +N + + + G+ ++ H Sbjct: 208 LIPIVHKAIENYLKCCPYPLVNTQPIFLGVRGKPLQPAIIQRTVQNLRARLGLPETTTPH 267 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT G + G + + YT Sbjct: 268 ALRHSFATHLLSRGGDLRTIQELLGHACLSTTQIYTH 304 >gi|288926256|ref|ZP_06420181.1| tyrosine recombinase XerD [Prevotella buccae D17] gi|288336947|gb|EFC75308.1| tyrosine recombinase XerD [Prevotella buccae D17] Length = 293 Score = 119 bits (298), Expect = 7e-25, Method: Composition-based stats. Identities = 41/275 (14%), Positives = 84/275 (30%), Gaps = 24/275 (8%) Query: 75 ISEYRKSAHWG-SLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRKHT 129 I ++ + + + + S+ G + + + IR +ES Sbjct: 3 IEKFLNYLKFELNRSERTVKSYGEDLRAFEEFFKNLDGHPSWESVDSDIIRDWMESMMDK 62 Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ-----Q 181 +S + L+++R +++A+ +E V +P V PK+K + + ++ Sbjct: 63 GNNATSINRRLSALRSFYRFALARELVVKDPAHDVVGPKKKKPLPQFLKENEINALLDSD 122 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDG 240 + + R +G+R S+ + T K + Sbjct: 123 MWEDTYDDMRARTIVMTFYETGMRLSELTGLRDADVDFVNHELKVTGKRNKQRIIPFGAE 182 Query: 241 FMKLLAMTPI--------GKETFFINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGVR 290 LA FF+ + M Q K ++ ++ H +R Sbjct: 183 LAHTLADYKSLRDATERGNCGKFFLTDKGLAMQNAQVREIVKKHLSRVCTLKKRTPHVLR 242 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 AT + A L G + E YT Sbjct: 243 HTFATAMLNHEAGLESLKRLLGHARLSTTEIYTHT 277 >gi|119709809|ref|YP_919149.1| phage integrase family protein [Thermofilum pendens Hrk 5] gi|119525915|gb|ABL79286.1| phage integrase family protein [Thermofilum pendens Hrk 5] Length = 278 Score = 119 bits (298), Expect = 7e-25, Method: Composition-based stats. Identities = 43/283 (15%), Positives = 85/283 (30%), Gaps = 28/283 (9%) Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFDYRKITTKHIRSG 122 KP ++ L+ Y + N+ ++ S + + +G D I Sbjct: 6 AKPEDIRALVENYLGVVKALR-SHNTYKTYASVLFAYAKFVEDTGKPDPA----AFISWL 60 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 ++ +S +R K+A + TE +R Sbjct: 61 EKNGWEKRTSIRTAYVVLRGFHKFAGLPWTLPPVKKPESVPKALGTEDVRKL-------- 112 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELP 238 R FLL +GLR S+ + + + K + V L Sbjct: 113 --LSVASPAEREVIVFLLKTGLRVSEFVHSRCEDVLVVGDGRYMLRVRGKGDKVRLVPLT 170 Query: 239 DGFMKLLAMTPIG---KETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294 ++++ G + + ++A A +AG+ + H +R A Sbjct: 171 KDVVEIIKARCTGRAGYIFPSPLDPDKPVSARSIQHLVSRVARRAGLQRVTPHTLRHTYA 230 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 T+ + G + G + + YTK D R+ + Sbjct: 231 TLLLNNGVDIRTIQTLLGHAQLTTTQVYTK-VDVARM-VDAID 271 >gi|118578727|ref|YP_899977.1| tyrosine recombinase XerC [Pelobacter propionicus DSM 2379] gi|166918893|sp|A1AKP9|XERC_PELPD RecName: Full=Tyrosine recombinase xerC gi|118501437|gb|ABK97919.1| tyrosine recombinase XerC [Pelobacter propionicus DSM 2379] Length = 302 Score = 119 bits (298), Expect = 7e-25, Method: Composition-based stats. Identities = 50/295 (16%), Positives = 97/295 (32%), Gaps = 30/295 (10%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQIIRK----SGD-FDYRKITTKHIRSGVESRK- 127 I +R +L+ ++ +++ Q GD + +R + Sbjct: 8 IRAFRLHLETERNLSPHTLAAYDRDLRQFAAFVAAEMGDSATAEDVDHLLLRRYLAQLGT 67 Query: 128 -HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 SS + L ++R ++ +R V+ NP + PKR+ + Sbjct: 68 QIRKSSQGRKLAAIRSFYRHLLRLGSVSRNPAELIATPKREQRLPFHLDIDQATALMETP 127 Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGF 241 +E G + R E L SGLR S+ ++ + ++ G V L Sbjct: 128 TEEENYGLRDRAILETLYSSGLRVSELTGLAIRDINLAGGMLRVMGKGGKERIVPLGSRA 187 Query: 242 MKLLAMTPIGKE------TFFINNDKQKMNATQFSIWFKAKAT--KAGVNKSAHGVRKFS 293 ++ + + F+N+ ++N + A A + S H +R Sbjct: 188 VRAIQEYLDSRGGGTATAPLFLNSRGDRINRRSVARIVDAHVHEIAAFKHISPHTLRHTF 247 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 AT + GA + G ++ + YT + R+ V D P Sbjct: 248 ATHMLEGGADLRAIQELLGHASLSTTQKYTHVS---------LDRLMEVYDKAHP 293 >gi|288959362|ref|YP_003449703.1| phage integrase [Azospirillum sp. B510] gi|288911670|dbj|BAI73159.1| phage integrase [Azospirillum sp. B510] Length = 418 Score = 119 bits (298), Expect = 7e-25, Method: Composition-based stats. Identities = 58/360 (16%), Positives = 100/360 (27%), Gaps = 28/360 (7%) Query: 9 PFVTKERTRHG-KIIYYFRKGHGRRI--------RLPYPHESTFIPAYMSALTGSTPKRE 59 + T G K + GR R P L S + Sbjct: 30 KGFVLKVTPSGAKTYLVVYRMGGRDTPKQKVTIGRHGSPWTPDKARTEAEKLLASVKRGT 89 Query: 60 YINSPRKKPT----TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKI 114 + +K T T+ L +Y ++ F ++ I G K+ Sbjct: 90 DPAAEKKARTKRGATVADLADDYLTQHVDVKNKPSTATGFRRLVEKEIKPPLGKLQVDKV 149 Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 T I + TP A Q L + +F A + + + + Sbjct: 150 TRADIAKLHHDMRDTPRQANQTLAVLSKMFSLAEVWGLRPDGTNPCKKIERYRENKRERF 209 Query: 175 TKEDMQQFK--------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226 + A LL +G R + + + I+ Sbjct: 210 LSVPEVERLGKALAELGETMEVHETILSAIRLLLLTGCRVGEVLALRWVDVVDGAVLIRD 269 Query: 227 QKTGTIITVELPDGFMKL-LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NK 284 K G + L + + + T S ++ +KAG+ + Sbjct: 270 AKAGGRVHPIGALAQAFLSELPRESEWVLPAPRSPRNPLPNTTISHGWEVVRSKAGLEDV 329 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT-KGADRIRLGIKNSRRISSVV 343 H +R T + AGA A + G KT+ Y + AD IR + S +I + Sbjct: 330 RLHDLRHTVGTYAGQAGANAFLVRDKLGHKTLAMTGRYVNRDADPIR---ELSDKIEGRI 386 >gi|86142374|ref|ZP_01060884.1| tyrosine type site-specific recombinase [Leeuwenhoekiella blandensis MED217] gi|85831126|gb|EAQ49583.1| tyrosine type site-specific recombinase [Leeuwenhoekiella blandensis MED217] Length = 405 Score = 119 bits (298), Expect = 7e-25, Method: Composition-based stats. Identities = 44/269 (16%), Positives = 83/269 (30%), Gaps = 10/269 (3%) Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES-R 126 P + K L+ Y L+ + + ++ Q + + + + R+ +E Sbjct: 106 PQSHKALLKRYVHYLKGQRLSEQTLKVYGNFTVQFLNHYKNKPIENLNVRAFRAFIEEVI 165 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 S + L K ++RPK+ + +++++ Sbjct: 166 AFRRYSISSHRQCISAL-KHLSILLEFPKAHFDGLQRPKKDKKLPVVLSRKEVIDLLRAT 224 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKL 244 + R L +GLR + + IK K TV+L + L Sbjct: 225 -PNLKHRTILALLYSAGLRIGELLALRCDAIDLDRMQVHIKKGKGRKDRTVKLAQAVVPL 283 Query: 245 LAMTPIGKETFFI---NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 L D Q +A + K T+AG+ K + H +R AT D Sbjct: 284 LLNYMESYAPTHYLIPGRDGQGYSAGAIRTFLKKSCTRAGIKKAVTPHTLRHSYATHMMD 343 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADR 328 G + G + YT + + Sbjct: 344 HGVALRHIQELLGHAKPETTMIYTHVSQQ 372 >gi|257095701|ref|YP_003169342.1| tyrosine recombinase XerC [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257048225|gb|ACV37413.1| tyrosine recombinase XerC [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 304 Score = 119 bits (298), Expect = 7e-25, Method: Composition-based stats. Identities = 42/282 (14%), Positives = 94/282 (33%), Gaps = 24/282 (8%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKHT 129 ++ Y L+ ++ ++ + + G+ + I T HIR V Sbjct: 10 VNAYLDELAGQRRLSPHTVSNYRHDLETLCALIGELPSDSGFAAIETHHIRRFVAILHTR 69 Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 S + L++ R ++W V++ +NP SV PK + + ++ + + Sbjct: 70 GLGGRSLGRTLSAWRGFYRWLVQRGMTTLNPVDSVRPPKSPKGLPKALSPDEANRLLAAQ 129 Query: 187 SEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDGF 241 SE + + FE SGLR ++ + L++ K + V + Sbjct: 130 SENLLEIRDQAIFELFYSSGLRLAELAALDIGCLEDLLAGEVRVLGKRNKLRIVPVGSQA 189 Query: 242 MKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRK 291 + +A+ + F+ +++ + + G+ H +R Sbjct: 190 REAVALWAGQRACLAAADETALFVGQRGRRLGVRMIQLRLLRRGRAQGLPARVHPHMLRH 249 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 A+ + + G ++ + YT D L Sbjct: 250 SFASHVLQSSGDLRAVQEMLGHASIASTQVYTH-LDFQHLAA 290 >gi|58583617|ref|YP_202633.1| site-specific tyrosine recombinase XerC [Xanthomonas oryzae pv. oryzae KACC10331] gi|58428211|gb|AAW77248.1| site-specific recombinase [Xanthomonas oryzae pv. oryzae KACC10331] Length = 347 Score = 119 bits (298), Expect = 7e-25, Method: Composition-based stats. Identities = 42/286 (14%), Positives = 94/286 (32%), Gaps = 29/286 (10%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF-------------DYRKITTKHIR 120 + E+ ++ ++ ++ ++ +G+ D ++ + H+R Sbjct: 46 VDEFLTYLQVERQVSAHTLDAYRRDLAALVAWTGERNAEDGAQQTATPVDSAQLDSAHLR 105 Query: 121 SGVE---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 V R +P S + L++ R + W ++ +A +P ++ PK + + + + Sbjct: 106 QFVAAEHRRGLSPKSLQRRLSACRSYYAWLLKHGRIAASPAAALRAPKAQRKLPQVLDAD 165 Query: 178 DMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTII 233 + + G + R E SGLR S+ C + L + + K Sbjct: 166 EAVRLVEVPTDAPLGLRDRALLELFYSSGLRLSELCALRWRDLDLDSGLVMVLGKGSKQR 225 Query: 234 TVELPDGFMKLLAMTPIG-----KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 V + + L F ++ I K A + G+ + Sbjct: 226 LVPVGSHAIAALRQWRRDSGASADAHVFPGRTGGAISQRAVQIRIKQLAVRQGMFKDVHP 285 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R A+ ++ + G + + YT D L Sbjct: 286 HMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTH-LDFQHLA 330 >gi|256840427|ref|ZP_05545935.1| tyrosine recombinase XerC [Parabacteroides sp. D13] gi|256737699|gb|EEU51025.1| tyrosine recombinase XerC [Parabacteroides sp. D13] Length = 374 Score = 119 bits (298), Expect = 7e-25, Method: Composition-based stats. Identities = 54/306 (17%), Positives = 102/306 (33%), Gaps = 25/306 (8%) Query: 35 LPYPHESTFIPAY--MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSR 92 L + AY SAL + PK+ SP P Y ++ + ++ Sbjct: 59 LSGFFDRHVETAYIDYSALKNTLPKKNGKTSPAIPPG--------YAETLRQLRYSEHTV 110 Query: 93 ISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAV 148 ++ +YF + + + R I + I + + ++R + + S++ F Sbjct: 111 RAYTAYFKEFQQYFAGRNLRYIRPEEINAYIVHLIDTRGISSCQQNLRINSIKFYF---- 166 Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208 + C V+R KR+ +KE+++ + F L +GLR S+ Sbjct: 167 EKVLGQERKCYEVKRAKRERTLPDVLSKEEIKSILDATGPDIRLFCMFSLLYSAGLRISE 226 Query: 209 SCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMT---PIGKETFFINNDKQK 263 + + ++ K L ++ L +E F + Sbjct: 227 LLDLKPHDINVSRSLIRVRQGKGRKDRYTLLSKPLVRKLTEYTKLYKPQEWLFERYKGEP 286 Query: 264 MNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321 + S K A +AG+ K H +R AT + G + G + E Sbjct: 287 FTESIVSKKLKEAAKEAGITKRVYPHLLRHSFATHLIEQGTDLKIVKELLGHNQLKTTEM 346 Query: 322 YTKGAD 327 Y AD Sbjct: 347 YVHIAD 352 >gi|213616311|ref|ZP_03372137.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 267 Score = 119 bits (298), Expect = 7e-25, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 78/233 (33%), Gaps = 18/233 (7%) Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 + + + + +S+ + L++MR F+ R++Y +P + PK + Sbjct: 23 DLQTLLAERVEGGYKATSSARLLSAMRRFFQHLYREKYREDDPSAQLASPKLPQRLPKDL 82 Query: 175 TKEDMQQFKSFWSEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT- 229 ++ +++ + + E L +GLR S+ + + ++ Sbjct: 83 SEAQVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKG 142 Query: 230 GTIITVELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATK 279 V L + + L + F + Q+M F K A Sbjct: 143 NKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVL 202 Query: 280 AGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AG++ S H +R AT + GA + G + + YT A Sbjct: 203 AGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 255 >gi|322384983|ref|ZP_08058635.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321150178|gb|EFX43689.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 404 Score = 119 bits (298), Expect = 7e-25, Method: Composition-based stats. Identities = 51/373 (13%), Positives = 113/373 (30%), Gaps = 40/373 (10%) Query: 6 RLPPFVTKERTRHG-KIIYYFRK---GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61 + PP + R G K Y + G+R + T A +A+ + Sbjct: 36 KCPP--ERRRCTCGAKWYYRYDITDPKTGKRKQKEVGGFRTKEEAQEAAVRIQSELLN-G 92 Query: 62 NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIR 120 T+ + ++ ++ +A N+ ++ I G +T H++ Sbjct: 93 TYVEPTKLTVGEFLLDFVENTLKYEVAPNTYEQRMTFVKNHIQPNIGSLRLTDLTPNHVQ 152 Query: 121 SGVESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE--GIRPWTK 176 S + + + F AV+ ++ NP V++P + ++ WT Sbjct: 153 KFYNSLREHYGAGYVQNIGNLLSKAFTQAVKWNMISRNPIPLVKKPSLSRKNTKMKTWTV 212 Query: 177 EDMQQFKSFWSEGSQ-PRLAFEFLLYSGLRCSDSCRAGVQHLQNNI----FSIKTQKTGT 231 ED ++F + +G + + F L SG+R + + Sbjct: 213 EDQRKFLDYAKDGPKLYYVIFLLALTSGMRKGELLGLIWDDVDTKKGIVSIKRTIVYAQR 272 Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQ-------------------KMNATQFSIW 272 + ++ + + + T + + + Sbjct: 273 KLYLKDMPKTESAIRTIQLPEPTIKVMKQWKLECPANELNLLFPSPKTKGILYPNSLDKQ 332 Query: 273 FKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330 AGV + HG+R AT + + G T+ TY+ Sbjct: 333 LAKTIKGAGVPEITMHGLRHTFATTLLGSNVNPKIVQEMLGHATIKTTMDTYSHVLPN-- 390 Query: 331 LGIKNSRRISSVV 343 + + ++ +V+ Sbjct: 391 MQKDAASQLGAVL 403 >gi|296161400|ref|ZP_06844207.1| tyrosine recombinase XerC [Burkholderia sp. Ch1-1] gi|295888386|gb|EFG68197.1| tyrosine recombinase XerC [Burkholderia sp. Ch1-1] Length = 307 Score = 119 bits (298), Expect = 7e-25, Method: Composition-based stats. Identities = 41/294 (13%), Positives = 88/294 (29%), Gaps = 31/294 (10%) Query: 69 TTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127 T I+ Y + L+ ++ + +++ + +T IR V Sbjct: 1 MTAADPIAAYLSNLEHERRLSAHTLRGYTHELEELKLLAKGRPLESLTAVDIRGAVSRAH 60 Query: 128 HTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 +A L++ R ++W + + NP +V PK+ + + +D + Sbjct: 61 AGGLTARSISHRLSAWRAFYRWLAGRVDLPANPVATVRAPKQAKTLPKALSVDDATRLME 120 Query: 185 ----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ------------K 228 EG + E SGLR ++ + + + K Sbjct: 121 SPPAASPEGLRDHAMLELFYSSGLRLAELVGLDARFADADGYRSAGWLKLDSAEVEVLGK 180 Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKA 280 V + ++ L ++ ++ +++ K A A Sbjct: 181 GNRRRVVPVGSKALEALGAWLAVRDQMVKHDPHPLFLSARGNRLSPNVVRERVKRAALVA 240 Query: 281 GVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 G+ H +R AT + + G ++ + YT D L Sbjct: 241 GIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYT-ALDFQHLA 293 >gi|251779332|ref|ZP_04822252.1| site-specific recombinase, phage integrase family [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083647|gb|EES49537.1| site-specific recombinase, phage integrase family [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 369 Score = 119 bits (298), Expect = 7e-25, Method: Composition-based stats. Identities = 57/352 (16%), Positives = 118/352 (33%), Gaps = 37/352 (10%) Query: 14 ERTRHGKIIYYFRKG---HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 ++ G G G+R R+ T A + + SP Sbjct: 5 KQLAKGNWKVTVSLGYGNDGKRQRVIKQGFKTKKDAEIFVTETLNQRNRGYISPSASNML 64 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE----S 125 K I+++ ++ +N+R+ ++S II G++ +ITT I+ Sbjct: 65 FKDFITKWYTEYKQFNIGINTRVGYQSRIKTHIIPMLGNYKLNEITTPIIQDFYNIMISE 124 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 +K P++ + + + FK+A + + + P ++ K + I+ W K+ +Q F + Sbjct: 125 KKLKPATVKKSMDILISCFKYAKKNKLIYELPTEIEKQ-KIEKPKIKVWNKDHVQLFLNK 183 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT---------------- 229 +G+ + +GLR S+ C + + + Sbjct: 184 I-KGTYLYTPIFIDVLTGLRLSELCGLRWCDVDLDNGYLTVNHQLIYDAITRTLLLGGLK 242 Query: 230 --GTIITVELPDGFMKLLAMTPIGKETFFINN-----DKQKMNATQFSIWFKAKATKAG- 281 + + +P + L ++ + + K S+ F K K Sbjct: 243 TESSHRKISIPTILINYLKELKEYRKAEKNDYLVLDRNDFKYTPKSLSMNFTKKIAKYKE 302 Query: 282 --VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330 + HG+R ATI G + G + TYT + ++ Sbjct: 303 QLPQITFHGLRHTHATILISNGENIKVVSERLGHTDIRMTLNTYTHVMEDMK 354 >gi|197302663|ref|ZP_03167717.1| hypothetical protein RUMLAC_01393 [Ruminococcus lactaris ATCC 29176] gi|197298245|gb|EDY32791.1| hypothetical protein RUMLAC_01393 [Ruminococcus lactaris ATCC 29176] Length = 377 Score = 119 bits (298), Expect = 7e-25, Method: Composition-based stats. Identities = 44/367 (11%), Positives = 101/367 (27%), Gaps = 44/367 (11%) Query: 14 ERTRHGKIIYYFRKG--HGRRIRLPYPHE---STFIPAYMSALTGSTPKREYINSPRKKP 68 + + G+ ++KG ++I+ Y + A ++ + Sbjct: 8 YKRKDGRWEGRYKKGYDKNKKIKYGYCYGHSYRETKEKVTRAKIELMLNSPPVSKDIYRK 67 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR- 126 ++ K L ++ + + I + GD+ + + + I + Sbjct: 68 R-FSEYCVQWIKINESR-LKKSTLAKYHFMLENHIKPQLGDYSFTDLNSDIIADFSKDLL 125 Query: 127 ---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 K +P + LT + + + + ++ + E +E + Sbjct: 126 YQKKLSPKTVRDILTFVHKIISYIQAETNSNLSSITISYPRLERKELRVLSAEEQQNLIQ 185 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 + + + L++GLR + C + + + + T I D K Sbjct: 186 YLVQDFDIYKFSVLIALFTGLRIGEVCALQWKDISVESGLLTVRHTVQRIKNPDSDSAKK 245 Query: 244 LLA--------------------------MTPIGKETFFINNDKQKMNATQFSIWFKAKA 277 L E F + + Q ++ K Sbjct: 246 TLLQLGTPKTFSSARTLPVTNGLQKLFKLFQHDDPEAFILTGNHQFIDPRNLQRKLKKYT 305 Query: 278 TKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLGIK 334 G+ + H +R AT + G L G + Y D R + Sbjct: 306 KDLGIQDVHFHTLRHTFATRCIEFGCDIKILSEMLGHSNISTTLNRYVHPSMDFKR---E 362 Query: 335 NSRRISS 341 N ++ Sbjct: 363 NILKLEQ 369 >gi|150397765|ref|YP_001328232.1| site-specific tyrosine recombinase XerD [Sinorhizobium medicae WSM419] gi|150029280|gb|ABR61397.1| tyrosine recombinase XerD [Sinorhizobium medicae WSM419] Length = 313 Score = 119 bits (298), Expect = 7e-25, Method: Composition-based stats. Identities = 42/286 (14%), Positives = 81/286 (28%), Gaps = 31/286 (10%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGVESRKH 128 + + + AVN+ S+E G D + S + Sbjct: 9 LEAFLEMMSAERGAAVNTLQSYERDLRDARSFLRSRGVGLVDASADDLRSYLSHLTGEGF 68 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 SS + L+++R +K+ + P ++ PK+ + + ED+ + Sbjct: 69 KSSSQARRLSALRQFYKFLYAEGLRTDEPTGILDAPKKNRALPKTLSIEDVTRLIGQAET 128 Query: 189 G-----------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-----------NIFSIKT 226 + E L +G+R S+ L N + Sbjct: 129 EAEKGGEDAVAKLRMHALIELLYATGMRVSELVSLPASVLAQDGRFLIIRGKGNKERLVP 188 Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284 I + + A F + F+ K+ A +AG+ Sbjct: 189 LSQTAIRAMRAYGQALHREADGADSPWLFPSYGRNGYLPRQVFARDLKSLAARAGIRVAA 248 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 S H +R A+ GA + G + + YT + Sbjct: 249 ISPHVLRHAFASHLLANGADLRAVQELLGHSDISTTQIYTHVLEER 294 >gi|325106888|ref|YP_004267956.1| tyrosine recombinase XerD subunit [Planctomyces brasiliensis DSM 5305] gi|324967156|gb|ADY57934.1| tyrosine recombinase XerD subunit [Planctomyces brasiliensis DSM 5305] Length = 315 Score = 119 bits (298), Expect = 7e-25, Method: Composition-based stats. Identities = 37/263 (14%), Positives = 79/263 (30%), Gaps = 23/263 (8%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH------TPSSAIQFLTS 139 +A NS ++ +Q + + + ++ KH S+ + L + Sbjct: 37 GMAENSVKAYIRDLEQFLDWLKKKHWHDVRELTLQQLTAYLKHLHDEGLKASTVARKLVA 96 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWSEGSQPRLA 195 ++ F++ V + + + + PK + + E + + R Sbjct: 97 LKTFFRFLVLEGVITDSKAELLNSPKLWQYLPKVLSPEKVDALLTAPSWEDEFPHRDRAI 156 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT------ 248 L +G R S+ + ++ + K + V L + L Sbjct: 157 LSVLYATGCRASEVTDLTLDQVRLDEGYCKCRGKGNKERIVSLNPVAIAALETYLQRERP 216 Query: 249 ----PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302 + F++ + ++ K A + G S H +R AT GA Sbjct: 217 ALAARHEQTHLFLSRTGRPLDRLTIWRIVKRYAARIGCSAQVSPHTLRHSFATHMLAGGA 276 Query: 303 TAHELMATYGWKTVDQAETYTKG 325 L G + + YT Sbjct: 277 EIRALQEMLGHANIRTTQVYTHV 299 >gi|257879448|ref|ZP_05659101.1| site-specific recombinase [Enterococcus faecium 1,230,933] gi|323142571|ref|ZP_08077387.1| site-specific recombinase, phage integrase family [Phascolarctobacterium sp. YIT 12067] gi|257813676|gb|EEV42434.1| site-specific recombinase [Enterococcus faecium 1,230,933] gi|322413004|gb|EFY03907.1| site-specific recombinase, phage integrase family [Phascolarctobacterium sp. YIT 12067] Length = 378 Score = 119 bits (298), Expect = 7e-25, Method: Composition-based stats. Identities = 47/379 (12%), Positives = 108/379 (28%), Gaps = 59/379 (15%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHEST-----FIPAYMSALTGSTPK-----REYINS 63 + + G+ GR I+ + +Y + Sbjct: 9 YKRKDGRW-------EGRYIKSRSSTGKANYGYVYAKSYREVKAKLISQSSCTSNSVTVD 61 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG 122 P + + E+ ++ + ++ + + I+ G R IT + I + Sbjct: 62 PEISSDQFEQVAMEWFQAICPK-VKESTSNKYRNLLSSYILPVFGSKQLRDITHEFIETQ 120 Query: 123 VE---------SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 + + L+ +R + ++A R S++ ++ E Sbjct: 121 CNFFLVSGGLKENGLSSKTVSDILSLIRNVLQFATRNGKAISCDARSIQIKRQTKEMRVL 180 Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233 E + + +S + L++GLR + C + + + ++I +T I Sbjct: 181 SRAEQEKLCQYLYSNLDSCNIGILVCLFTGLRVGEICALRWEDVSFSDYTIHVHQTLQRI 240 Query: 234 TVELPDGFMKLLAMTPIGKETFFINND-------------------------KQKMNATQ 268 + + +T + + Sbjct: 241 QDRTNSEYKTRIVVTTPKSACSIRTIPVPHGLMTILTAHKASSTGYILTNSDQNPLEPRT 300 Query: 269 FSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK-G 325 FK +G+ + H +R AT + G L G +V+ Y Sbjct: 301 MQNHFKKVLKNSGITSANYHSLRHTFATRCIELGFDVKSLSEILGHASVNITMNRYVHPS 360 Query: 326 ADRIRLGIKNSRRISSVVD 344 D R +N +R+S ++ Sbjct: 361 MDLKR---ENMQRLSDLLA 376 >gi|220917980|ref|YP_002493284.1| tyrosine recombinase XerC [Anaeromyxobacter dehalogenans 2CP-1] gi|219955834|gb|ACL66218.1| tyrosine recombinase XerC [Anaeromyxobacter dehalogenans 2CP-1] Length = 343 Score = 119 bits (298), Expect = 7e-25, Method: Composition-based stats. Identities = 45/286 (15%), Positives = 89/286 (31%), Gaps = 30/286 (10%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTPSS 132 Y S + ++R +++ Q D + +R + + + Sbjct: 19 FDAYLASE--KRASPHTRKAYQVDLAQYAAYLADQGQPLVPSSPALVRGFLARQAGAAGA 76 Query: 133 AI--QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 + L+++R L+++ VR+ NP +V PKR +E++ + Sbjct: 77 VSLGRKLSALRSLYRFLVREGLAPGNPARAVASPKRPKRLPEVLPEEEVAALVETPDAAT 136 Query: 191 ------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMK 243 + R E L SGLR S+ ++ L ++ K V Sbjct: 137 EAPLALRDRAFLELLYGSGLRVSELTGLDLEDLDLAGGLVRVLGKRNKERIVPFGAPAAD 196 Query: 244 LLAM--------------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AH 287 L + F+N ++ + + +G+ + H Sbjct: 197 ALRRYLDGARPVLAAGPDHARAGDAVFLNFRGGRLTSRSVARRLDGWVLASGLPRHVHPH 256 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 +R AT GA + G ++ + YT D RL Sbjct: 257 VLRHCFATHLLGNGADLRGIQELLGHASLSTTQRYTH-LDWKRLAA 301 >gi|328954140|ref|YP_004371474.1| Tyrosine recombinase xerC [Desulfobacca acetoxidans DSM 11109] gi|328454464|gb|AEB10293.1| Tyrosine recombinase xerC [Desulfobacca acetoxidans DSM 11109] Length = 310 Score = 119 bits (297), Expect = 7e-25, Method: Composition-based stats. Identities = 45/267 (16%), Positives = 91/267 (34%), Gaps = 26/267 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRK--HTPSSAIQFLT 138 SLA ++ ++ S Q + ++T + +R+ + R + +S + L Sbjct: 28 RSLAAHTVRNYLSDIGQFMEFWNYRRPGHSLGELTYQDLRAFLAERHRLNCKTSIARKLA 87 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRL 194 ++R K+ RQ ++ N PK + + T +++ + R Sbjct: 88 ALRTFCKFLTRQGLLSHNIAALTPTPKLEARLPKFLTIDEVFHLLEQTWGQTVLAVRDRA 147 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLAMT----- 248 E GLR ++ + +L + K G V + ++ L Sbjct: 148 ILELFYSGGLRVAELVGLNLDNLDLPQHLAKVRGKGGKERLVIIGRQALQTLNSYLLVRR 207 Query: 249 --------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISA 298 G+E F+N ++ + + + A KAG+ S HG+R AT Sbjct: 208 ELITPDSPVSGREAVFLNYRGGRLTSRSVARLVEKWAIKAGLGQPLSPHGLRHTFATHLL 267 Query: 299 DAGATAHELMATYGWKTVDQAETYTKG 325 + A + G + + Y Sbjct: 268 EGKADLRAVQELLGHAQLSTTQKYLHV 294 >gi|326803545|ref|YP_004321363.1| phage integrase, N-terminal SAM domain protein [Aerococcus urinae ACS-120-V-Col10a] gi|326651486|gb|AEA01669.1| phage integrase, N-terminal SAM domain protein [Aerococcus urinae ACS-120-V-Col10a] Length = 309 Score = 119 bits (297), Expect = 7e-25, Method: Composition-based stats. Identities = 49/305 (16%), Positives = 94/305 (30%), Gaps = 30/305 (9%) Query: 69 TTLKWL---ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRS 121 T + + EY K + + ++ S FD I D D+ +++ + IR Sbjct: 1 MTFESYRKRLKEYIKDEKH--YSDQTLKAYLSDFDDFISFLRDELLISDFEQLSYRDIRL 58 Query: 122 GVESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + S + L+S+R F + Q V NP V+ K + + + Sbjct: 59 YLSHLQRKGLSRKSLARHLSSLRTAFNRFLDQGLVKDNPFTYVQAAKTGLRLPDFFYEAE 118 Query: 179 MQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTII 233 + + + EFL +G R S+ + + K Sbjct: 119 LDPLFEAAKGPRALDKRNIALLEFLYATGARVSECTNLTITQVDLKNSIALLHGKGSKDR 178 Query: 234 TVELPDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKA--G 281 V K L E F+N+ + + + + K+ Sbjct: 179 YVPFGSYCKKALEEYLDSGRPVLLKGHDHEYIFVNSRGEALTPSGVTYILNDLVKKSASN 238 Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 ++ H +R AT + GA + G ++ + YT + L + Sbjct: 239 LDIHPHKLRHSFATHLLNHGADIRTVQELLGHSSLSSTQIYTH-MSKESLRNNYLKYFPR 297 Query: 342 VVDSD 346 SD Sbjct: 298 AKHSD 302 >gi|197106796|ref|YP_002132173.1| integrase/recombinase XerC [Phenylobacterium zucineum HLK1] gi|196480216|gb|ACG79744.1| integrase/recombinase XerC [Phenylobacterium zucineum HLK1] Length = 308 Score = 119 bits (297), Expect = 7e-25, Method: Composition-based stats. Identities = 40/291 (13%), Positives = 85/291 (29%), Gaps = 31/291 (10%) Query: 66 KKPTTLKWLISEYRKSAHW-GSLAVNSRISF----ESYFDQIIRKSGD----FDYRKITT 116 P T + + + + ++ Y + R G+ D +T Sbjct: 2 AAPLTAFDARAAWLGRLEHERRASPRTLEAYGFVVARYLAFLERHRGEALSAKDLGSVTA 61 Query: 117 KHIRSGVESRKH-----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 +R+ + + +P S Q L+++R ++ R+ + V P+ K Sbjct: 62 GEVRAWLAHLRSGETPLSPRSLSQALSAIRTFHRFLDRRLEIPNAAVGLVRGPRVKPGAP 121 Query: 172 RPWTKEDM--------QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223 RP +++ E ++ + L GLR S++ Sbjct: 122 RPVSEDQAIGLIAEPAFDPDREGWEAARDQAVLTLLYGCGLRISEALSLRRSDAPLPEQL 181 Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAK 276 T K V + + + F ++ + Sbjct: 182 RITGKGAKTRIVPVLPAVREAVDAYLTQVPFGLAPDEPLFRAKRGGPLSPRHVQATVQQL 241 Query: 277 ATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 + G+ + H +R AT AGA + G ++ + YT+ Sbjct: 242 RGRLGLPASATPHALRHSFATHLLGAGADLRSIQELLGHASLSTTQRYTEV 292 >gi|326389407|ref|ZP_08210974.1| integrase family protein [Thermoanaerobacter ethanolicus JW 200] gi|325994412|gb|EGD52837.1| integrase family protein [Thermoanaerobacter ethanolicus JW 200] Length = 330 Score = 119 bits (297), Expect = 8e-25, Method: Composition-based stats. Identities = 44/303 (14%), Positives = 99/303 (32%), Gaps = 43/303 (14%) Query: 74 LISEYRKS-AHWGSLAVNSRISFESYFDQIIRK-------------SGDFDYRKITTKHI 119 L+ E+ + + + N+ ++ +R + D + I Sbjct: 20 LLEEFLNYFSTVKARSYNTVKAYAYDLVLFLRFLKQRRGKVSPNVEFDEIDISDVDVDLI 79 Query: 120 RSGV------------ESRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKR 166 S R +TP + + + S+R + + ++ + ++ NP +E PK Sbjct: 80 ESVDLNDLYAYLNFVANERSNTPPARARKVASLRSFYNYLYKKAKVLSKNPTQELESPKL 139 Query: 167 KTEGIRPWTKEDMQQFKSFW--SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 T ++ ++ + + L GLR S+ + ++++ + Sbjct: 140 SVRQPIYLTLDESKKLLNSIDGPFKERDYAIITLFLNCGLRVSELVNINLDDIKDDKLT- 198 Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAK 276 K TV L D + + + + + K ++++ K Sbjct: 199 VIGKGNKQRTVYLNDACIDAINTYLEVRPKEGVKDKKALFLSKRLKRISVKTVQYTVKKH 258 Query: 277 ATKAGV---NKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD-RIRL 331 A + SAH +R +AT+ G L G V + YT D +++ Sbjct: 259 LKNANLEGKKYSAHKLRHTAATLMYRYGNVDIRTLQKLLGHSNVSTTQIYTHVDDSQLKE 318 Query: 332 GIK 334 + Sbjct: 319 AVN 321 >gi|187931223|ref|YP_001891207.1| site-specific recombinase [Francisella tularensis subsp. mediasiatica FSC147] gi|187712132|gb|ACD30429.1| site-specific recombinase [Francisella tularensis subsp. mediasiatica FSC147] Length = 292 Score = 119 bits (297), Expect = 8e-25, Method: Composition-based stats. Identities = 31/255 (12%), Positives = 89/255 (34%), Gaps = 15/255 (5%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMR 141 + + + +++ Q+ + D + +T I ++ ++P + + L+S+R Sbjct: 18 KNYSQETINNYQRDLLQLNQALSDKNIISLTHSDILIWIKKLHAQGNSPKTLQRKLSSVR 77 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRLAFEF 198 F + + E V+ NP ++ PK + +++ + F+ Sbjct: 78 SFFNFLINSEIVSQNPANGIKAPKDSKRLPKVVNTDELAYLLDINPSNDIEARDIACFDL 137 Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFI 257 L G+R S+ ++ + + +I+ V + L+ +++ Sbjct: 138 LYSCGIRLSELSSVELKDISISQKNIRVTGKGNKQRIVYFGTKTLSNLSRWLKIRDSLKP 197 Query: 258 NNDKQKMNATQFSIWFKAKATKAGV--------NKSAHGVRKFSATISADAGATAHELMA 309 ++D ++ + ++ + + + H +R A+ D+ + Sbjct: 198 SSDYLFISRDGKHLTNRSIQKRLEIFAQKYASRHIHPHMLRHSFASHVLDSSKDLLAVKD 257 Query: 310 TYGWKTVDQAETYTK 324 G + + YT Sbjct: 258 LLGHADISSTQIYTH 272 >gi|167752616|ref|ZP_02424743.1| hypothetical protein ALIPUT_00870 [Alistipes putredinis DSM 17216] gi|167659685|gb|EDS03815.1| hypothetical protein ALIPUT_00870 [Alistipes putredinis DSM 17216] Length = 368 Score = 119 bits (297), Expect = 8e-25, Method: Composition-based stats. Identities = 30/264 (11%), Positives = 79/264 (29%), Gaps = 15/264 (5%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSA 133 Y + + ++ ++ +YF + + ++ I + +K + S Sbjct: 96 YLELLEQKRYSPSTVKTYRAYFSDFMEYHKGRNIDRLKVPDINKYILYLVNEKKISVSQQ 155 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193 + +++ + + + + R K +K ++++ + Sbjct: 156 NMRINAIKF---YYEQVKGGKRQYYGGITRAKEYKSLPEVLSKNEIKRIL-AQISNIKHH 211 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252 + +GLR S+ Q + + S++ L ++ L Sbjct: 212 CMISLVYSAGLRRSELLNLTPQDINSETMSVRIMGKGKKCRYSLLSPKLLEELRHYFREY 271 Query: 253 ETFFINN----DKQKMNATQFSIWFKAKATKAGVNKSAH--GVRKFSATISADAGATAHE 306 ++ +A+ K A +AG+ H +R AT + G H Sbjct: 272 RPQKWLFEGETPGEQYSASALVKVLKEAAHRAGIKHRVHVHMLRHSFATHLLEQGTDLHT 331 Query: 307 LMATYGWKTVDQAETYTKGADRIR 330 + G + Y + + Sbjct: 332 IQELLGHNDIKTTTIYLHVSSAHK 355 >gi|167463333|ref|ZP_02328422.1| tyrosine recombinase xerC [Paenibacillus larvae subsp. larvae BRL-230010] gi|322384830|ref|ZP_08058491.1| site-specific tyrosine recombinase XerD-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321150299|gb|EFX43801.1| site-specific tyrosine recombinase XerD-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 317 Score = 119 bits (297), Expect = 8e-25, Method: Composition-based stats. Identities = 42/271 (15%), Positives = 91/271 (33%), Gaps = 25/271 (9%) Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----------ESRKHTPSSAIQFL 137 A N+R ++E Q ++++T K + + + P+S F+ Sbjct: 34 AANTRRNYERALQQFREFISYKPFQQVTWKEVEAYKLSLIQGRFAKSKKPLAPASVAAFI 93 Query: 138 TSMRVLFKWAVRQE---YVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-SFWSEGSQPR 193 T +R +KW + P + TK ++ + + + Sbjct: 94 TPLRSFYKWGSESNIGIFKHNPTVSVRMPPIQVNSKKHFLTKYEVGKLLQCLKQQSLRNY 153 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNN------IFSIKTQKTGTIITVELPDGFMKLLAM 247 L L+ GLR S+ + +I K G +++P KL Sbjct: 154 LIGLSLVLLGLRVSELVSMKWGDFHPDPLETSVWLTIPKAKGGKSRDIKIPKALWKLYTE 213 Query: 248 TPIG---KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302 N ++ Q K+ ++G+ + H +R +AT++ GA Sbjct: 214 HAETLSESANPHANLQLFPISVRQIERIIKSAGIQSGIVKKLTPHWLRHTNATLALLQGA 273 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGI 333 + ++ T G ++ + Y ++++ Sbjct: 274 SLQQVQETLGHSHINTTQRYLHTVEQMKKAA 304 >gi|312882545|ref|ZP_07742286.1| integrase [Vibrio caribbenthicus ATCC BAA-2122] gi|309369945|gb|EFP97456.1| integrase [Vibrio caribbenthicus ATCC BAA-2122] Length = 342 Score = 119 bits (297), Expect = 8e-25, Method: Composition-based stats. Identities = 51/325 (15%), Positives = 97/325 (29%), Gaps = 18/325 (5%) Query: 28 GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS-EYRKSAHWGS 86 +G+R R + AY + + +E++ P K L LI + KS Sbjct: 19 RNGKRFR-RKFDKKAEALAYEKHILSTHHNKEWLGLPVDKRN-LSELIDIWWIKSGQLK- 75 Query: 87 LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL---TSMRVL 143 + ++ + I R+ GD I I + R A + + + Sbjct: 76 ---RTATNYRQKLELICRELGDPTVNNIDATLINNWQLERMAKGQKANTVRRLSSCLSNV 132 Query: 144 FKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202 F + ++ +P +++P + + T Q + + E L + Sbjct: 133 FSVLIETGDFTGAHPLRGLKKPTPEKSEMTYLTLMQAQCLLDYLKNDWELLKIVEVSLAT 192 Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262 G R ++ +L KTG TV + + GK Sbjct: 193 GSRWRETVTLKSSNLSPYRIRFTNTKTGKPRTVPISKQLYDDIYPEIGGKLFSEDPQ--- 249 Query: 263 KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 + F + H +R A+ G L G +++Q TY Sbjct: 250 ----KRLVKVFNELKFDLPKGQKVHVLRHTFASHFIMNGGDILTLKEILGHCSINQTMTY 305 Query: 323 TKGADRIRLGIKNSRRISSVVDSDD 347 A + +S + D + Sbjct: 306 AHLAPDHLVDAIKLNPLSKLRDPQN 330 >gi|291530097|emb|CBK95682.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3] Length = 338 Score = 119 bits (297), Expect = 8e-25, Method: Composition-based stats. Identities = 36/287 (12%), Positives = 91/287 (31%), Gaps = 33/287 (11%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK-- 127 K I + + L+ + ++ Q + +++ + + + +E Sbjct: 40 FKTHIDGFINYCRYHKKLSDKTISAYCIDLIQFRCFT-----SELSKQSLWNYIEHLNKS 94 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE------------RPKRKTEGIRPWT 175 + P + + L +++ + + ++ + NP +E P I + Sbjct: 95 YKPKTVKRKLATLKAFTHYLLIRDIIDCNPFDKIETSIKEPVILPKTIPLDTIGEILCFA 154 Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKT--GT 231 +++ + + + S R A L +G R ++ C Q + S+K Sbjct: 155 YTQIEKSNTDYKKNSAIRNAAVLELLFATGARVAEICNLHSQDVDFIGKSVKLYGKGSKE 214 Query: 232 IITVELPDGFMKLLAMTPIGKE-------TFFINNDKQKMNATQFSIWFKAKATKAGV-- 282 I + +L+ E FF+N +++ + G+ Sbjct: 215 RIIPIENTSVLTILSDYYFIHEEKISDCGYFFVNKYGKRLTEQSVRCMINSYCQTCGISM 274 Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + + H R AT+ + + G ++ + YT Sbjct: 275 HITPHMFRHSFATLLLEQDVDIRYIQKLLGHSSITTTQIYTHVTSAK 321 >gi|325853546|ref|ZP_08171378.1| phage integrase, N-terminal SAM domain protein [Prevotella denticola CRIS 18C-A] gi|325484350|gb|EGC87278.1| phage integrase, N-terminal SAM domain protein [Prevotella denticola CRIS 18C-A] Length = 294 Score = 119 bits (297), Expect = 8e-25, Method: Composition-based stats. Identities = 41/275 (14%), Positives = 94/275 (34%), Gaps = 24/275 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKHT 129 I + + + + IS+ + R + D + + T +R +E Sbjct: 4 IDMFLDYLRLERNYSPMTVISYRKDLEAFERFCQELDPQITWESVDTDVVRDWMEDMMDK 63 Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ----- 181 SS + ++++R +++A+R V+ +P ++ P+R+ + + +M+Q Sbjct: 64 GNAASSVNRRISALRSFYRFALRCGLVSKDPVHGLQGPRRQKPLPQFLKESEMEQLLDPA 123 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDG 240 + E R +G+R S+ + + + T K + Sbjct: 124 MWTDGYEDVLARTLIVTFYETGIRLSELTGLDDRDVDDVTCELKVTGKRNKQRIIPFGKE 183 Query: 241 FMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGVR 290 + LA ++ F +++ Q K +K ++ H +R Sbjct: 184 LEETLAAYRCVRDARTGDSSPTLFRTEKGERITNAQVRALVKKNLSKVSTLKKRTPHVLR 243 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 AT + A + G +++ E YT Sbjct: 244 HTFATAMLNHEAGLESVKKLLGHESLSTTEIYTHT 278 >gi|309789594|ref|ZP_07684175.1| phage integrase family protein [Oscillochloris trichoides DG6] gi|308228330|gb|EFO81977.1| phage integrase family protein [Oscillochloris trichoides DG6] Length = 294 Score = 119 bits (297), Expect = 8e-25, Method: Composition-based stats. Identities = 36/273 (13%), Positives = 94/273 (34%), Gaps = 24/273 (8%) Query: 75 ISEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRKHTP 130 I ++ S + ++ ++ + +Q+ + +T I + + S + Sbjct: 5 IEQFLVSMATDQMRSEHTCSAYRTDLEQLRLFLAAREVADWQAVTHDDILAFMISLRERG 64 Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 S+ + +M+ F + + Q+ + +P ++ PK + + T+ DM + Sbjct: 65 YAMSTMARRTAAMKSFFGFLLEQQIIKKDPTSHIDSPKVNRDRPKAITQFDMDELLELPL 124 Query: 187 ----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGF 241 E + + E L +G+R S+ + + + +++ + + + Sbjct: 125 RSSGPESLRDKAMLELLAATGMRVSELVTLELADISLSAGTVRCRSKSGRERVLPIGLTA 184 Query: 242 MKLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAGV-NKSAHGVR 290 L + + + + F + K A + G+ + + H +R Sbjct: 185 TTALEEYLDIARNQLVRSGETPILFLNHRGKQLTRQGFWLILKGYADQIGLHDLTPHTLR 244 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYT 323 A GA E+ G ++ + YT Sbjct: 245 HSFAAHLVYEGADLREVQERLGHASLSTTQIYT 277 >gi|262091726|gb|ACY25315.1| tyrosine recombinase XerD [uncultured actinobacterium] Length = 311 Score = 119 bits (297), Expect = 8e-25, Method: Composition-based stats. Identities = 36/282 (12%), Positives = 87/282 (30%), Gaps = 29/282 (10%) Query: 76 SEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKHTPSS 132 + + + ++ + D + + I + S + + Sbjct: 8 ERFLTWMTIEQGRSPRTIEAYRRDLHRYEAFLVLKSCDVLSVQSPVIEQFIASLRAEGKA 67 Query: 133 AI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---- 185 A + ++R++ ++ + + NP V+ K + + +++++ + + Sbjct: 68 AKSVARMYAAVRMMHRYLIEERLRPDNPTSGVDGVKVPSGIPKALSEDEVARILASVTGV 127 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKL 244 S + R EFL +G R S++C + L ++ K V Sbjct: 128 DSFALRDRALLEFLYATGARISEACGLSLSDLDMESQLVRLFGKGSKERIVPFGSHAKAA 187 Query: 245 LAMTPIGKETFFINNDKQ----------------KMNATQFSIWFKAKATKA--GVNKSA 286 L + +++ +++ + A A G S Sbjct: 188 LEEWLGAGGRTMLVSEQWAKRDHADAVFLGSRGTRLSRQAAWRIVQKFAQIAEVGDEVSP 247 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 H +R AT GA + G +V + YT+ + Sbjct: 248 HVLRHSCATHMLIHGADLRIVQELLGHASVSTTQVYTRVDNE 289 >gi|251782571|ref|YP_002996873.1| integrase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391200|dbj|BAH81659.1| integrase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 362 Score = 119 bits (297), Expect = 8e-25, Method: Composition-based stats. Identities = 50/345 (14%), Positives = 102/345 (29%), Gaps = 33/345 (9%) Query: 11 VTKERTRHGKIIY----YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 + + +G+ Y Y +G+R + T +A + ++ P+ Sbjct: 3 IKSYKKENGETAYKFLLYAGYVNGKRKYIRREGFKT----KQAARETLINLQAELDKPKS 58 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 T L ++ K + + I+ K I I+ E Sbjct: 59 -SMTFGALTDQWLKEYEKTVQGSTYLKTERNINKHILPKLDKVKIGDINPLLIQRLTEEW 117 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-----IRPWTKEDMQQ 181 + + L +R + AVR Y+ NP L + PK K + + Sbjct: 118 CNDLKYGGKILGLVRNILNLAVRYGYINNNPALPITPPKIKRKRKMNNNFYTLDQLKQFL 177 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--------------FSIKTQ 227 ++ + F L ++G+R + L N T+ Sbjct: 178 ELVEKTDNIEKIALFRLLAFTGIRKGELLALTWDDLNGNTLSINKAVTRTQVGLEIDVTK 237 Query: 228 KTGTIITVELPDGFMKLL---AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284 + + L D +++L T F + M + W + + Sbjct: 238 TKSSDRLISLDDETLEILLELRETFPTSTLMFQSESGGIMTPSLPRKWLLQIIKGTDLPQ 297 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGAD 327 + HG R A++ ++G + ++ G + YT Sbjct: 298 ITIHGFRHTHASLLFESGLSLKQVQHRLGHGDLQTTMNVYTHITQ 342 >gi|293371016|ref|ZP_06617558.1| integron integrase [Bacteroides ovatus SD CMC 3f] gi|292633946|gb|EFF52493.1| integron integrase [Bacteroides ovatus SD CMC 3f] Length = 368 Score = 119 bits (297), Expect = 8e-25, Method: Composition-based stats. Identities = 30/264 (11%), Positives = 79/264 (29%), Gaps = 15/264 (5%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSA 133 Y + + ++ ++ +YF + + ++ I + +K + S Sbjct: 96 YLELLEQKRYSPSTVKTYRAYFSDFMEYHKGRNIDRLKVPDINKYILYLVNEKKISVSQQ 155 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193 + +++ + + + + R K +K ++++ + Sbjct: 156 NMRINAIKF---YYEQVKGGKRQYYGGITRAKEYKSLPEVLSKNEIKRIL-AQISNIKHH 211 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252 + +GLR S+ Q + + S++ L ++ L Sbjct: 212 CMISLVYSAGLRRSELLNLTPQDINSETMSVRIMGKGKKCRYSLLSPKLLEELRHYFREY 271 Query: 253 ETFFINN----DKQKMNATQFSIWFKAKATKAGVNKSAH--GVRKFSATISADAGATAHE 306 ++ +A+ K A +AG+ H +R AT + G H Sbjct: 272 RPQKWLFEGETPGEQYSASALVKVLKEAAHRAGIKHRVHVHMLRHSFATHLLEQGTDLHT 331 Query: 307 LMATYGWKTVDQAETYTKGADRIR 330 + G + Y + + Sbjct: 332 IQELLGHNDIKTTTIYLHVSSAHK 355 >gi|167751075|ref|ZP_02423202.1| hypothetical protein EUBSIR_02060 [Eubacterium siraeum DSM 15702] gi|167655993|gb|EDS00123.1| hypothetical protein EUBSIR_02060 [Eubacterium siraeum DSM 15702] Length = 338 Score = 119 bits (297), Expect = 8e-25, Method: Composition-based stats. Identities = 36/287 (12%), Positives = 91/287 (31%), Gaps = 33/287 (11%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK-- 127 K I + + L+ + ++ Q + +++ + + + +E Sbjct: 40 FKTHIDGFINYCRYHKKLSDKTISAYCIDLIQFRCFT-----SELSKQSLWNYIEHLNKS 94 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE------------RPKRKTEGIRPWT 175 + P + + L +++ + + ++ + NP +E P I + Sbjct: 95 YKPKTVKRKLATLKAFTHYLLIRDIIDCNPFDKIETSIKEPVILPKTIPLDTIGEILCFA 154 Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKT--GT 231 +++ + + + S R A L +G R ++ C Q + S+K Sbjct: 155 YTQIEKSNTDYKKNSAIRNAAVLELLFATGARVAEICNLHSQDVDFIGKSVKLYGKGSKE 214 Query: 232 IITVELPDGFMKLLAMTPIGKE-------TFFINNDKQKMNATQFSIWFKAKATKAGV-- 282 I + +L+ E FF+N +++ + G+ Sbjct: 215 RIIPIENTSVLTILSDYYFIHEEKISDCGYFFVNKYGKRLTEQSVRCMINSYCQTCGISM 274 Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + + H R AT+ + + G ++ + YT Sbjct: 275 HITPHMFRHSFATLLLEQDVDIRYIQKLLGHSSITTTQIYTHVTSAK 321 >gi|325063103|gb|ADY66793.1| tyrosine recombinase xerD [Agrobacterium sp. H13-3] Length = 331 Score = 119 bits (297), Expect = 8e-25, Method: Composition-based stats. Identities = 44/318 (13%), Positives = 100/318 (31%), Gaps = 53/318 (16%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESRKH 128 + + + A N+ S+E + G + + + ++ Sbjct: 14 LESFLEMMSAERGAAANTLSSYERDLSDLREFLGGRGQSLMEAATADLSAYLTHLSTQGF 73 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +S + L+SMR +++ + +P +++ PK+ + + D+ + +E Sbjct: 74 AATSQARRLSSMRQFYRFLYSEGLRGDDPTGTIDAPKKGLTLPKTMSVADVTKLLGIAAE 133 Query: 189 GS-----------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVE 236 + + L E L +G+R S+ V+ L+ + K V Sbjct: 134 EAALTGPGQLARIRMHLLLELLYATGMRVSELVSLPVKVLRQEGRFLMIRGKGNKDRMVL 193 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNA-----------------------TQFSIWF 273 L ++ + +++ + + F+ Sbjct: 194 LSRAAIEAMEKYDAARKSLVPEKSRTPASPKKADSPESPWLFPSNSKEGHLPRQVFARDL 253 Query: 274 KAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 K A +AG+N S H +R A+ GA + G + + YT + Sbjct: 254 KDIAIRAGLNPSAVSPHVLRHAFASHLLQNGADLRAVQELLGHSDISTTQIYTHVLEE-- 311 Query: 331 LGIKNSRRISSVVDSDDP 348 R+ +V + P Sbjct: 312 -------RLQELVQTHHP 322 >gi|260560424|ref|ZP_05832599.1| predicted protein [Enterococcus faecium C68] gi|260073584|gb|EEW61911.1| predicted protein [Enterococcus faecium C68] Length = 382 Score = 119 bits (297), Expect = 8e-25, Method: Composition-based stats. Identities = 51/370 (13%), Positives = 118/370 (31%), Gaps = 48/370 (12%) Query: 13 KERTRHGKIIYYFRKG------HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 + + ++G+ ++ F+ G+++R T A ALT + E + Sbjct: 6 QYKKKNGEKLWKFQTYLGVDPLTGKQVRTTRRGFKTKKEA-QLALTKLQLEYESNGLNKS 64 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 K T + + + + + + E + + I+ G KI+ + + Sbjct: 65 KELTFQEVYDLWIVNYEQTVKESSFVKTKEQFANHILPAFGALKINKISIDIAQKFANEK 124 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 +F+ + + +A++ Y+ NP + PKRK T + + Sbjct: 125 VKKFVLYREFINNASRICDYAIKLGYLQDNPFKKITVPKRKVSVHEEDTLNFFNKEELEI 184 Query: 187 SE-------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------- 232 + F L ++G+R + + + N IK KT Sbjct: 185 FLKSVEKKKDIRMYSFFRTLAFTGMRVGELLALTWKDIDFNDNYIKINKTLARGKNRRLY 244 Query: 233 ----------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF------------- 269 + + D M +L + + + + ++ Q Sbjct: 245 VEQPKTKNSKRDIPVDDETMNILKKWRLEQRKWLLTLGINTLSKNQLVFSNQKNEYLQLS 304 Query: 270 --SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKG 325 W + + + + + HG+R A++ +AGA ++ G ++ Y Sbjct: 305 KPRKWLEVIIKQNNLKRITIHGLRHTHASLLLEAGANIKDVQERLGHSSIQITMDLYIHI 364 Query: 326 ADRIRLGIKN 335 D+ + Sbjct: 365 TDKRKEKTAA 374 >gi|284991929|ref|YP_003410483.1| integrase family protein [Geodermatophilus obscurus DSM 43160] gi|284065174|gb|ADB76112.1| integrase family protein [Geodermatophilus obscurus DSM 43160] Length = 365 Score = 119 bits (297), Expect = 8e-25, Method: Composition-based stats. Identities = 48/333 (14%), Positives = 102/333 (30%), Gaps = 29/333 (8%) Query: 11 VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 +T + G Y R + + S + +P + T Sbjct: 5 ITVDVLSDGSKRYRSRYRDAGGRQHEKRFQRRVDAQRWLDEQTSAIVTQTWTAPERGRVT 64 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR--- 126 ++ ++ + L ++ + S QI+ + G IT + + V Sbjct: 65 VEAWAEQWLAAQ--TGLKPSTLYRYRSLLRAQILPRWGRHRLADITHADVAAWVAQLVAG 122 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 P + Q + ++ AVR + NP V P+ + R T+E++++ Sbjct: 123 GLAPPTVRQAHRVLALILTLAVRDGRIPRNPAAGVPLPRTRRADPRFLTREEVERLADAA 182 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII-----------TV 235 E L Y+GLR + V+ + + ++ T + Sbjct: 183 GEYGD---VVRLLAYTGLRFGEMAALRVRRVDFLRRRLTVAESATEVGGTVEYGTPKTHQ 239 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF--------SIWFKAKATKAGV-NKSA 286 + +L + +D + +F A AG+ + S Sbjct: 240 QRTVPIPAVLVEPLSRRCGGKGRDDLVLTSPGGAVLRSGNFRRRFFDPAAKAAGLEDLSP 299 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQA 319 H +R +A++ +GA + G + Sbjct: 300 HDLRHTAASLLVASGANVKAVQRMLGHASAAMT 332 >gi|254282053|ref|ZP_04957021.1| tyrosine recombinase XerC [gamma proteobacterium NOR51-B] gi|219678256|gb|EED34605.1| tyrosine recombinase XerC [gamma proteobacterium NOR51-B] Length = 304 Score = 119 bits (297), Expect = 8e-25, Method: Composition-based stats. Identities = 43/280 (15%), Positives = 89/280 (31%), Gaps = 23/280 (8%) Query: 68 PTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSG- 122 +L IS++ ++ ++ ++ + R I +RS Sbjct: 2 TLSLGASISDFLDYQRDVRRMSHHTVSNYRRDLNHFEEFCRASNCTSPRDIKESVVRSWA 61 Query: 123 --VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 ++ + P++ + L+S+R FK + NP + + P+R + + + + Sbjct: 62 GQMQRQGKAPATIQRGLSSVRSYFKHLAARHADISNPAIGIRAPRRPRKLPKTIEADRIG 121 Query: 181 QFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVE 236 +E + + + E L SGLR ++ ++ L T K TV Sbjct: 122 ALFQRPAESTLEKRDQAIAELLYSSGLRLAELVDVNLEDLDRREGVITVTGKGDKTRTVP 181 Query: 237 LPDGFMKLLAMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATK--AGVNK 284 + +K L + N ++ K A G N Sbjct: 182 VGVAALKALEAWIACRPIGQEVLSAKAPLFVNQRGTRLGQRSVQDRLKKLAKATHLGQNL 241 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT ++ + G + + YT Sbjct: 242 HPHMLRHSFATHLLESSGDLRAVQELLGHANISTTQIYTH 281 >gi|54303070|ref|YP_133063.1| hypothetical protein PBPRB1396 [Photobacterium profundum SS9] gi|46916498|emb|CAG23263.1| hypothetical protein PBPRB1396 [Photobacterium profundum SS9] Length = 295 Score = 119 bits (297), Expect = 8e-25, Method: Composition-based stats. Identities = 41/283 (14%), Positives = 91/283 (32%), Gaps = 19/283 (6%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPS 131 L ++ + + ++ +I + D +TT ++ S H+ S Sbjct: 12 LYEQHLTNLTLQGKRPATIDAYSRAVRRISQFF-DRCPDAMTTADLKQYFASLIQTHSWS 70 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 + ++ ++ + +E+ ++ P + + T + + ++ + Sbjct: 71 TVKLDRNGLQFFYRHTLEKEWQWLDIVK----PPQSKKLPDIITAQQVAL-LISMTKQKR 125 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAMTP 249 ++ F L GLR + V + + I+ K G V +P + L Sbjct: 126 YQIFFLTLYTMGLRLGEGLSLTVHDIDQHTMQVHIRDGKGGKDRLVPVPQRTLNALRAHW 185 Query: 250 IGKETFF------INNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301 + N M+ K G+NK S H +R AT + G Sbjct: 186 LTHRHPRLIFPGKGCNTDNPMDRGGVQKAMKLVLKDCGINKPISPHSLRHCFATHLLEQG 245 Query: 302 ATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSRRISSVV 343 L G +++ YT+ + R R++ + Sbjct: 246 LDLRSLQILLGHASLNTTARYTRMTQIKQRDAALAINRLADAL 288 >gi|329947868|ref|ZP_08294800.1| phage integrase, SAM-like domain protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328523492|gb|EGF50590.1| phage integrase, SAM-like domain protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 306 Score = 119 bits (297), Expect = 8e-25, Method: Composition-based stats. Identities = 43/301 (14%), Positives = 94/301 (31%), Gaps = 32/301 (10%) Query: 68 PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--------DFDYRKITTKH 118 P T L++ Y + L+ ++ ++ ++ G + Sbjct: 2 PRTRADLLAAYHRYLSLQRDLSQHTARAYLVDICDLLSFLGVGEGDAPIGAALATLDLAD 61 Query: 119 IRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 +R + + H+ ++ + S+R WA + + + + P+ T Sbjct: 62 LRDWLAALAASGHSRATLARRSASVRTFSAWAFEEGILTSDVAARLRAPRVDNRLPGVLT 121 Query: 176 KEDMQQFKSF--------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT- 226 + Q + E L +G+R S+ V L ++ +++ Sbjct: 122 AQQAAQLLQTAADLAADGDILAVRDLAIAETLYATGVRVSELVGLDVTDLDHSQRTLRVL 181 Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINN---------DKQKMNATQFSIWFKAKA 277 K TV + L +E + ++++ Sbjct: 182 GKGRKERTVPYGLPAARALEGWLSRREEICAPDAGTALFLGARGRRIDPRAARDIVHRLC 241 Query: 278 TKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKN 335 AGV HG+R +AT GA + G ++ + YT A+R+R + Sbjct: 242 AAAGVPDLGPHGLRHSAATHVLSGGADLRSVQELLGHSSLATTQRYTHVSAERLRSVYEQ 301 Query: 336 S 336 + Sbjct: 302 A 302 >gi|187250446|ref|YP_001874928.1| integrase family protein [Elusimicrobium minutum Pei191] gi|186970606|gb|ACC97591.1| Integrase family protein [Elusimicrobium minutum Pei191] Length = 291 Score = 119 bits (297), Expect = 8e-25, Method: Composition-based stats. Identities = 41/261 (15%), Positives = 86/261 (32%), Gaps = 21/261 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKH---TPSSAIQFLTS 139 L+ N+ ++ + + + + I + K +P S + + Sbjct: 14 RQLSKNTIYAYTNDVGDFFAFCEENNTAPQNVRPDFIDEYIYHLKQKGLSPKSVFRKTQA 73 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---SFWSEGSQPRLAF 196 ++ +K+ + + +PC + PK + TKE++ + + Sbjct: 74 VKSFYKYLIINGDIKEDPCRFLLSPKLTQKIPETLTKEEISRLLSFPPKTFAEIRTLTIL 133 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKLLAMTPIGKETF 255 E GLR S+ ++ + + K + + D +K+L + +E + Sbjct: 134 ELFYACGLRVSELVSLRIESVNLKDKWVLAYGKGAKQRFIPIHDRAVKVLEIYLSEREKY 193 Query: 256 ----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGAT 303 FIN + +K++ AG+ +S H R AT GA Sbjct: 194 LKGKESASEIFINKNGKKISRMSVWKDVNDLGRLAGIERSLHPHLFRHTFATHLLIGGAD 253 Query: 304 AHELMATYGWKTVDQAETYTK 324 L G + + YT Sbjct: 254 LRSLQEMLGHADLQTTQIYTH 274 >gi|324324345|gb|ADY19605.1| prophage LambdaBa04, site-specific recombinase, phage integrase family protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 374 Score = 119 bits (297), Expect = 8e-25, Method: Composition-based stats. Identities = 51/352 (14%), Positives = 104/352 (29%), Gaps = 42/352 (11%) Query: 15 RTRHGKIIYYFRKGH----GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 R R K + G G+R + T A A + + K T Sbjct: 6 RKRGEKWSFTIDIGRDLLTGKRKQKTVSGFKTKKEA-ERACNELIHQFNTGSLVDDKNLT 64 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH- 128 L + E+ ++ + + I++ + +II G + + H + V+S Sbjct: 65 LSEYLQEWLENTAKQRVRDTTFINYRRAVNSRIIPVIGSHKLKDLKPLHGQRFVKSLIDE 124 Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-SF 185 +P ++ + AV+ E + NP VE P+ + W+ E+ + F Sbjct: 125 ELSPKYIEYIFIVLKGALEDAVKWELLYKNPFEHVEIPRPRKVVNNTWSIEETKTFLAYA 184 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-----------------NNIFSIKTQK 228 + F L +G+R + +++ F+ Sbjct: 185 KFDNPIYYHLFSLALNTGMRRGELLGLKWKNVDLVEGKISVTETLIYDELGFRFTEPKTS 244 Query: 229 TGTIITVELPDGFMK-------------LLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275 + + + + F D + + + F+ Sbjct: 245 GSKRLISIDQSLCKELKSYKAKQNEFKLAIGKAYEDNDLVFSREDGRPIYPRTLTTVFER 304 Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325 A V K H +R AT+ G + G ++ +TY+ Sbjct: 305 FIKTAQVPKIRFHDLRHTHATLLLKLGINPKVVSERLGHNSIKTTLDTYSHV 356 >gi|15600473|ref|NP_253967.1| site-specific tyrosine recombinase XerC [Pseudomonas aeruginosa PAO1] gi|254238023|ref|ZP_04931346.1| site-specific recombinase Sss [Pseudomonas aeruginosa C3719] gi|34222782|sp|Q51566|XERC_PSEAE RecName: Full=Tyrosine recombinase xerC gi|9951593|gb|AAG08665.1|AE004940_9 site-specific recombinase Sss [Pseudomonas aeruginosa PAO1] gi|126169954|gb|EAZ55465.1| site-specific recombinase Sss [Pseudomonas aeruginosa C3719] Length = 303 Score = 119 bits (297), Expect = 8e-25, Method: Composition-based stats. Identities = 37/278 (13%), Positives = 92/278 (33%), Gaps = 21/278 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVESRKHTP 130 + + + ++ ++ + +I+ K+G D+ + T+ +R+ V Sbjct: 5 LDAFLEHLRSERQVSAHTLDGYRRDLLKILALAEKAGLSDWNALDTRSLRTFVARLHQQG 64 Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S + L++ R L+++ +R+ +P + PK + R + Q Sbjct: 65 QSSRSLARLLSATRGLYQYLLREGRCRHDPANGLSAPKSPRKLPRTLDADRALQLLDGAV 124 Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 E + + E SGLR S+ ++ L ++ + + + + Sbjct: 125 EDDFIARRDQALLELFYSSGLRLSELVGLDLEWLDLKEGLVRVRGKGNKVRELPVGKAAR 184 Query: 243 KLLAMTPIGKET-------FFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSA 294 + L + FI +++ + + + G + H +R A Sbjct: 185 QALEAWLPLRTQAAPEDGAVFIGRSGKRLTPRAIQLRVRQAGVRELGQHLHPHMLRHSFA 244 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 + ++ + G + + YT D L Sbjct: 245 SHLLESSGDLRAVQELLGHADIATTQIYTH-LDFQHLA 281 >gi|189423412|ref|YP_001950589.1| tyrosine recombinase XerC [Geobacter lovleyi SZ] gi|254799343|sp|B3E1H7|XERC_GEOLS RecName: Full=Tyrosine recombinase xerC gi|189419671|gb|ACD94069.1| tyrosine recombinase XerC [Geobacter lovleyi SZ] Length = 317 Score = 119 bits (297), Expect = 8e-25, Method: Composition-based stats. Identities = 48/308 (15%), Positives = 93/308 (30%), Gaps = 45/308 (14%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI-------------- 119 ++ + + S + ++ ++ + + ++TK + Sbjct: 8 VARFLEFLATQRSASPHTIAAYRNDLNGFSSFVRSERGNTVSTKTVDHLLLRLYLASLNG 67 Query: 120 -RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + SS + L ++R F W VR + +NP + PKR+ + Sbjct: 68 GLDKQQRAGYAKSSIGRKLAAVRAFFGWLVRTRQLEVNPAELIATPKREQRLPFHLNIDQ 127 Query: 179 MQQFKSFWSEGS-------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG- 230 + E L SGLR S+ V L ++ Q G Sbjct: 128 TVTLIEAPGHTGQEQPTFARDTAILELLYSSGLRVSELTGLAVADLDRAAGMVRVQGKGG 187 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFIN------NDKQKMNATQFSIWFKAKATKAGVN- 283 V + ++ L G+ + ++N + K A +G+ Sbjct: 188 KERIVPVGSAALEALEQYLAGRGQLADDAPLFLGCRGARINRRTVAQLVKRWA--SGIPA 245 Query: 284 ---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 S H +R AT + GA + G ++ + YT R+ Sbjct: 246 FRSISPHTLRHTFATHMLEGGADLRSIQELLGHSSLSTTQKYTHV---------GLDRLL 296 Query: 341 SVVDSDDP 348 V D P Sbjct: 297 EVYDKAHP 304 >gi|289578357|ref|YP_003476984.1| integrase [Thermoanaerobacter italicus Ab9] gi|297544634|ref|YP_003676936.1| integrase family protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289528070|gb|ADD02422.1| integrase family protein [Thermoanaerobacter italicus Ab9] gi|296842409|gb|ADH60925.1| integrase family protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 328 Score = 119 bits (297), Expect = 8e-25, Method: Composition-based stats. Identities = 44/303 (14%), Positives = 97/303 (32%), Gaps = 43/303 (14%) Query: 74 LISEYRKS-AHWGSLAVNSRISFESYFDQIIRK-------------SGDFDYRKITTKHI 119 L+ E+ + + + N+ ++ +R + D + I Sbjct: 19 LLEEFLNYFSTVKARSYNTVKAYAYDLVLFLRFLKQRRGKVSPDVEFDEIDISDVDVDLI 78 Query: 120 RSGV------------ESRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKR 166 S R +TP + + + S+R + + ++ + + NP +E PK Sbjct: 79 ESVDLNDLYAYLNFVTNERSNTPPARARKVASLRSFYDYLYKKAKVINKNPTQELESPKL 138 Query: 167 KTEGIRPWTKEDMQQFKSFW--SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 T ++ ++ + L GLR S+ + ++++ + Sbjct: 139 SVRQPIYLTLDESKKLLDSIDGPFKERDYAIITLFLNCGLRVSELVNINIDDIKDDKLT- 197 Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAK 276 K TV L D + + + + + K ++++ K Sbjct: 198 VIGKGNKQRTVYLNDACINAINAYLRVRPKEGVKDKKALFLSKRLKRISVKTVQYTVKKH 257 Query: 277 ATKAGV---NKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD-RIRL 331 A + SAH +R +AT+ G L G V + YT D +++ Sbjct: 258 LKNANLGGKKYSAHKLRHTAATLMYRYGNVDIRTLQKLLGHSNVSTTQIYTHVDDSQLKE 317 Query: 332 GIK 334 + Sbjct: 318 AVN 320 >gi|161523917|ref|YP_001578929.1| site-specific tyrosine recombinase XerD [Burkholderia multivorans ATCC 17616] gi|189351322|ref|YP_001946950.1| site-specific tyrosine recombinase XerD [Burkholderia multivorans ATCC 17616] gi|160341346|gb|ABX14432.1| tyrosine recombinase XerD [Burkholderia multivorans ATCC 17616] gi|189335344|dbj|BAG44414.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616] Length = 316 Score = 119 bits (297), Expect = 8e-25, Method: Composition-based stats. Identities = 50/304 (16%), Positives = 92/304 (30%), Gaps = 28/304 (9%) Query: 49 SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG- 107 A G+ + + R + + + LA N+ ++ + Sbjct: 9 EAGDGTAAPSPALLASRASIDLFCDAL--WLEH----GLARNTLDAYRRDLTLFSQWLAA 62 Query: 108 --DFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164 D + + +R +S+ + L+ R + WAVR+ + +P L + Sbjct: 63 THDAALDAADETMLTGYIAARSDGKATSSNRRLSVFRRYYGWAVREHRASADPTLRIASA 122 Query: 165 KRKTEGIRPWTKEDMQQFK----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220 K+ ++ ++ G + R E + SGLR S+ + N Sbjct: 123 KQAARFPSTLSEAQVEALLGAPDIATPLGLRDRTMLELMYASGLRVSELVTLKTVEVGLN 182 Query: 221 IFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQF 269 ++ V + + F+ M QF Sbjct: 183 EGVVRVMGKGSKERLVPFGEVAHGWIERYLREARPALLGARAADALFVTARGDGMTRQQF 242 Query: 270 SIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 K A A V + S H +R AT + GA + G + + YT A Sbjct: 243 WNIIKRHAQHADVRAHLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVA- 301 Query: 328 RIRL 331 R RL Sbjct: 302 RERL 305 >gi|325473780|gb|EGC76968.1| tyrosine recombinase xerC [Treponema denticola F0402] Length = 305 Score = 119 bits (297), Expect = 8e-25, Method: Composition-based stats. Identities = 46/286 (16%), Positives = 88/286 (30%), Gaps = 34/286 (11%) Query: 73 WLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESRKHT 129 + Y SA + S+++ + D ++ IR + Sbjct: 3 EVFESYLTYSAGVRQFTKATIDSYKNDLIIFEEWLKELDLNVFELKASDIRIFIAELADK 62 Query: 130 ---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 P+S + ++++R +K+A+R INP SV K + + Q+F Sbjct: 63 KIAPASINRMMSTLRGFYKYALRFNLTKINPISSVRNLKLAQKLPVFMFPKQAQEFCRLP 122 Query: 187 SEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDG 240 S ++ F L +G R S+ ++ L ++I K V + Sbjct: 123 SNAGILWETRDAALFASLYSTGCRVSELAGLDIKDLDKTLSYAIVFGKGKKERKVFFAEF 182 Query: 241 FMKLLAMTPIGKETF--------------------FINNDKQKMNATQFSIWFKAKATKA 280 + L + + FIN Q + + + Sbjct: 183 AKEYLKIYLQERTDLVEKFKGQVQKDGKGKIRDALFINQKAQALTSRGIRYIINRYVELS 242 Query: 281 G--VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + S H R A+ GA + G ++V + YT Sbjct: 243 PELKHLSPHAFRHSFASTLITRGADIRVVQELLGHESVSTTQRYTH 288 >gi|325297633|ref|YP_004257550.1| integrase family protein [Bacteroides salanitronis DSM 18170] gi|324317186|gb|ADY35077.1| integrase family protein [Bacteroides salanitronis DSM 18170] Length = 368 Score = 119 bits (297), Expect = 8e-25, Method: Composition-based stats. Identities = 32/266 (12%), Positives = 82/266 (30%), Gaps = 15/266 (5%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPS 131 Y + + ++ ++ +YF + + ++ I + +K + S Sbjct: 94 EGYLELLEQKRYSPSTIKTYRAYFSDFVEYHKGRNIDRLKVADINRYILYLVNEKKISVS 153 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 + +++ + + + + R K +K ++++ + Sbjct: 154 QQNMRINAIKF---YYEQVKGGKRQYYGGITRAKEYKTVPEVLSKNEIKRILD-QLSNIK 209 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----ELPDGFMKLLA 246 + +GLR S+ + + + + S++ G +L + + Sbjct: 210 HHCMISLVYSAGLRRSELLNLTPKDINSEMMSVRIMGKGKKCRYSLLSPKLLEELRRYFR 269 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAH--GVRKFSATISADAGATA 304 K F Q +A+ K A +AG+ H R AT + G Sbjct: 270 EYRPKKWLFEGETPGQPYSASALVKVLKEAAQRAGIKHRVHVHTARHSFATHLLEQGTDL 329 Query: 305 HELMATYGWKTVDQAETYTKGADRIR 330 H + G + Y ++ + Sbjct: 330 HTIQELLGHNDIKTTAIYLHTSNAHK 355 >gi|229137159|ref|ZP_04265778.1| Prophage LambdaBa04, site-specific recombinase, phage integrase [Bacillus cereus BDRD-ST26] gi|228646331|gb|EEL02546.1| Prophage LambdaBa04, site-specific recombinase, phage integrase [Bacillus cereus BDRD-ST26] Length = 378 Score = 119 bits (297), Expect = 8e-25, Method: Composition-based stats. Identities = 51/352 (14%), Positives = 104/352 (29%), Gaps = 42/352 (11%) Query: 15 RTRHGKIIYYFRKGH----GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 R R K + G G+R + T A A + + K T Sbjct: 6 RKRGEKWSFTIDIGRDPLTGKRKQKTVSGFKTKKEA-ERACNELIHQFNTGSLVDDKNLT 64 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH- 128 L + E+ ++ + + I++ + +II G + + H + V+S Sbjct: 65 LSEYLQEWLENTAKQRVRDTTFINYRRAVNSRIIPVIGSHKLKDLKPLHGQRFVKSLIDE 124 Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-SF 185 +P ++ + AV+ E + NP VE P+ + W+ E+ + F Sbjct: 125 ELSPKYIEYIFIVLKGALEDAVKWELLYKNPFEHVEIPRPRKVVNNTWSIEETKTFLTYA 184 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-----------------NNIFSIKTQK 228 + F L +G+R + +++ F+ Sbjct: 185 KFDNPIYYHLFLLALNTGMRRGELLGLKWKNVDLVEGKVSVTETLIYDELGFRFTEPKTS 244 Query: 229 TGTIITVELPDGFMK-------------LLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275 + + + + F D + + + F+ Sbjct: 245 GSKRLISIDQSLCKELKSYKAKQNEFKLAIGKAYEDNDLVFSREDGRPIYPRTLTTVFER 304 Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325 A V K H +R AT+ G + G ++ +TY+ Sbjct: 305 FIKTAQVPKIRFHDLRHTHATLLLKLGINPKIVSERLGHNSIKTTLDTYSHV 356 >gi|113460570|ref|YP_718634.1| phage integrase [Haemophilus somnus 129PT] gi|112822613|gb|ABI24702.1| phage integrase [Haemophilus somnus 129PT] Length = 374 Score = 119 bits (297), Expect = 8e-25, Method: Composition-based stats. Identities = 47/344 (13%), Positives = 101/344 (29%), Gaps = 39/344 (11%) Query: 12 TKERTRHGKIIY---YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 ++ ++G Y + + + K Sbjct: 4 YRDENKNGTWYCKLSYVNWKGQKLSKKKRGFSTKKEAVAW-------EKEFLNGQAGSIE 56 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVES-- 125 T + Y++ + N+ + E+ + +I+ GD IT I Sbjct: 57 LTFREFFELYKRDKKPR-IRENTWRTKEAIVNSKIMPYIGDLLMIDITNVTIIQWQNELM 115 Query: 126 -------RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKE 177 R ++P+ + + A R + N V K + + WT+E Sbjct: 116 KVKDDRGRNYSPTYLRSIHAQLSSILNHACRYYNLKTNVARDVGTMGEKEADEMSFWTQE 175 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH----------------LQNNI 221 + ++F + + Q AFE L + GLR + + + Sbjct: 176 EYEKFIAAIKDKPQSFYAFEILYWCGLRMGELLALTKEKFNFNTNTLKVDESLQKIDGEN 235 Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 + +I + +PD + + G + + + A KA Sbjct: 236 IITPPKTKKSIRKIVMPDFLAEEIQNYLDGFYKLKPKDLIFTFSKSYLHHEMDRGAKKAN 295 Query: 282 VNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 V + H +R ++ + G +A + G +++D Y Sbjct: 296 VKRIRVHDLRHSHVSLLIELGFSATAIADRVGHESIDITYRYAH 339 >gi|167579401|ref|ZP_02372275.1| site-specific tyrosine recombinase XerC [Burkholderia thailandensis TXDOH] Length = 306 Score = 119 bits (297), Expect = 9e-25, Method: Composition-based stats. Identities = 40/288 (13%), Positives = 91/288 (31%), Gaps = 31/288 (10%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTP 130 I++Y + L+ ++ ++ ++ + + +T +R + + + Sbjct: 6 IADYLSNLRHVRKLSDHTLRAYAHELGELRKLANGRPLESLTAVDMRGAVARAHAGGLSA 65 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 S L++ R ++W + + NP +V PKR + + +D + G+ Sbjct: 66 RSISHRLSAWRAFYRWFSQHVEMNANPVAAVRAPKRAKTLPKALSVDDAAALMDAPTAGT 125 Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------GTIIT 234 + E SGLR ++ V++ ++ + + Sbjct: 126 AEHLRDHAILELFYSSGLRLAELIGLDVEYTKDGDYRSEGWLDLAEAEVTVRGKGDKERK 185 Query: 235 VELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--K 284 V + + L F++ +M+ K A AG+ Sbjct: 186 VPVGRKAIDALNAWLAVRGEFVKRDARPLFLSVRGNRMSPGVVRERVKRAALAAGIPANV 245 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R AT + + G ++ + YT D L Sbjct: 246 HPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYT-SLDFQHLA 292 >gi|154508823|ref|ZP_02044465.1| hypothetical protein ACTODO_01333 [Actinomyces odontolyticus ATCC 17982] gi|153798457|gb|EDN80877.1| hypothetical protein ACTODO_01333 [Actinomyces odontolyticus ATCC 17982] Length = 315 Score = 119 bits (297), Expect = 9e-25, Method: Composition-based stats. Identities = 41/288 (14%), Positives = 90/288 (31%), Gaps = 33/288 (11%) Query: 69 TTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVE 124 T+L+ L+ ++ + ++ ++ + + G + I+ + I Sbjct: 2 TSLEALVRDWVDYLRVEKGASAHTVSNYRRDVARYAFDMKSRGKVNVEDISPRDIEDYTM 61 Query: 125 SRKHTPSS--------AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + + ++R L K+A+ + V + + P++ + + Sbjct: 62 RLASGRVTGTPAAASSVARASAAIRGLHKYALTEGAVGTDAAAQLHAPRQGRHLPKALSV 121 Query: 177 EDMQQFKSFWS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 +++ + G + E L +G R S++ L + + G Sbjct: 122 DEVGRLLDAAHADDSPIGLRDAALLELLYATGARVSEAVSLSADDLDLDGDVPVVRLFGK 181 Query: 232 IIT--------------VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277 LA G FF+N+ ++ + A Sbjct: 182 GRKERIVPVGSFAVDALYAYRVRARPALAARGRGSTAFFLNSRGGALSRQSAWTAIRRAA 241 Query: 278 TKA--GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 A G S H +R AT + GA+ E+ G +V + YT Sbjct: 242 EAAQLGERVSPHTLRHSFATHLLEGGASVREVQELLGHASVATTQIYT 289 >gi|319780736|ref|YP_004140212.1| tyrosine recombinase XerC [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166624|gb|ADV10162.1| tyrosine recombinase XerC [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 312 Score = 119 bits (297), Expect = 9e-25, Method: Composition-based stats. Identities = 44/291 (15%), Positives = 87/291 (29%), Gaps = 31/291 (10%) Query: 71 LKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRS 121 L+ + K A L+ + ++E Q + G D + +R Sbjct: 12 LQAARESWLKMLARERRLSPETVEAYERDTRQFLHFLTGHCGGSPGISDIADLRPADLRG 71 Query: 122 GVESRKHTPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + +R++ + A L +R L ++ R+ ++ P++ +P T D Sbjct: 72 FLAARRNGGAGARTLGRGLAGIRSLLRFLERRGLANAAGAAALRAPRQPKSLPKPLTASD 131 Query: 179 MQQFK-------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--IKTQKT 229 + ++ L SGLR S++ L + + K Sbjct: 132 AKHIVSIEGQLAEEPWIAARNAAVLTLLYGSGLRISEALGLAGADLASAADTVLRVAGKG 191 Query: 230 GTIITVELPDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKAGV 282 G V + ++ +A F +N + + Sbjct: 192 GKTRLVPVLPVALRAIAEYRRLCPYHLDPKGLLFRGARGGPLNPAIVQRDMAKLRSALNL 251 Query: 283 N--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 + H +R AT G + G ++ + YT G D RL Sbjct: 252 PDTATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQIYT-GVDTARL 301 >gi|329889983|ref|ZP_08268326.1| tyrosine recombinase xerD [Brevundimonas diminuta ATCC 11568] gi|328845284|gb|EGF94848.1| tyrosine recombinase xerD [Brevundimonas diminuta ATCC 11568] Length = 300 Score = 119 bits (297), Expect = 9e-25, Method: Composition-based stats. Identities = 44/300 (14%), Positives = 97/300 (32%), Gaps = 35/300 (11%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD-YRKITTKHIRSGVESRKHTPSS 132 I + + + ++ ++ D + + + S Sbjct: 5 IEAFLEMMAVERDASPHTLAAYGRDLADAQTWLNDVGGLMGAPQEALEAWFADLSRRGLS 64 Query: 133 AIQFLT---SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---- 185 A S+R +++A+ + + A +P ++ PK+ + ++++++ + Sbjct: 65 AATAARRRASVRQFYRFALGEGWRADDPSRRLDAPKQGRSLPKTLSRDEIEALLTAAGAA 124 Query: 186 -WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMK 243 + G + + E SGLR S+ V+ ++ + I K G L + Sbjct: 125 DSTAGLRLIVLVEMAYASGLRVSELLALKVEAVRRDPAYLIVRGKGGKERLAPLNMPARE 184 Query: 244 LLAMT------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 + P F + + +F+ A AG++ S H Sbjct: 185 AIKAWLNARDAARKPNTPDSAWLFPSHGKSGHLTPRRFAQLLDQAAVMAGIDPARVSPHV 244 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 +R AT + GA + G + + YT R+S VV ++ P Sbjct: 245 LRHAFATHLLEGGADLRVVQTLLGHADISTTQIYTHV---------AVDRLSQVVHANHP 295 >gi|188586142|ref|YP_001917687.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350829|gb|ACB85099.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 279 Score = 119 bits (297), Expect = 9e-25, Method: Composition-based stats. Identities = 41/278 (14%), Positives = 104/278 (37%), Gaps = 14/278 (5%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP- 130 + L+ ++ +++ + ++ ++E Y + + + D ++T I + + Sbjct: 4 EKLLKDFIENSSNQH-SASTLETYERYIRKFLMSWKN-DLSEVTDDDIDDFLNEYEEKGY 61 Query: 131 --SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + + ++ F ++Y+++ P + VE P + + +P ++ + + K+ + Sbjct: 62 NSRTIHVIIAALHDFFSHLKYKKYISVIPTVDVEIPNHEKKLPKPLSEIKIIKLKNEAKD 121 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIIT----VELPDGFM 242 + R E L ++G+R S+ ++ + + I+ K + Sbjct: 122 HLRDRAIIEVLHWTGVRVSELINIRIEDIWWDTREIWIRKGKGLKERNVIINYICKQYLI 181 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADA 300 + L FI K+ + A KAG+ + H R T + Sbjct: 182 EYLDTRSDDIPYLFITKRKRPFTRQGVNKLLNKYAIKAGIKENVTPHMFRHTFITDLINK 241 Query: 301 GATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337 GA + G + + + + YT+ A R +L + Sbjct: 242 GAEEGVVADLAGHEDIKRLKDYTEVARKRKKLEYEKLH 279 >gi|107104381|ref|ZP_01368299.1| hypothetical protein PaerPA_01005457 [Pseudomonas aeruginosa PACS2] gi|116053429|ref|YP_793754.1| site-specific tyrosine recombinase XerC [Pseudomonas aeruginosa UCBPP-PA14] gi|218894383|ref|YP_002443253.1| site-specific tyrosine recombinase XerC [Pseudomonas aeruginosa LESB58] gi|254243833|ref|ZP_04937155.1| site-specific recombinase Sss [Pseudomonas aeruginosa 2192] gi|296392138|ref|ZP_06881613.1| site-specific tyrosine recombinase XerC [Pseudomonas aeruginosa PAb1] gi|313106696|ref|ZP_07792914.1| site-specific recombinase [Pseudomonas aeruginosa 39016] gi|122256552|sp|Q02E82|XERC_PSEAB RecName: Full=Tyrosine recombinase xerC gi|254799351|sp|B7V5H1|XERC_PSEA8 RecName: Full=Tyrosine recombinase xerC gi|115588650|gb|ABJ14665.1| site-specific recombinase [Pseudomonas aeruginosa UCBPP-PA14] gi|126197211|gb|EAZ61274.1| site-specific recombinase Sss [Pseudomonas aeruginosa 2192] gi|218774612|emb|CAW30429.1| site-specific recombinase Sss [Pseudomonas aeruginosa LESB58] gi|310879416|gb|EFQ38010.1| site-specific recombinase [Pseudomonas aeruginosa 39016] Length = 303 Score = 119 bits (297), Expect = 9e-25, Method: Composition-based stats. Identities = 37/278 (13%), Positives = 92/278 (33%), Gaps = 21/278 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVESRKHTP 130 + + + ++ ++ + +I+ K+G D+ + T+ +R+ V Sbjct: 5 LDAFLEHLRSERQVSAHTLDGYRRDLLKILALAEKAGLSDWNALDTRSLRTFVARLHQQG 64 Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S + L++ R L+++ +R+ +P + PK + R + Q Sbjct: 65 QSSRSLARLLSATRGLYQYLLREGRCRHDPANGLSAPKSPRKLPRTLDADRALQLLDGAV 124 Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 E + + E SGLR S+ ++ L ++ + + + + Sbjct: 125 EDDFIARRDQALLELFYSSGLRLSELVGLDLEWLDLKEGLVRVRGKGNKVRELPVGKAAR 184 Query: 243 KLLAMTPIGKET-------FFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSA 294 + L + FI +++ + + + G + H +R A Sbjct: 185 QALEAWLPLRAQAAPEDGAVFIGRGGKRLTPRAIQLRVRQAGVRELGQHLHPHMLRHSFA 244 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 + ++ + G + + YT D L Sbjct: 245 SHLLESSGDLRAVQELLGHADIATTQIYTH-LDFQHLA 281 >gi|317481432|ref|ZP_07940499.1| phage integrase [Bacteroides sp. 4_1_36] gi|316902417|gb|EFV24304.1| phage integrase [Bacteroides sp. 4_1_36] Length = 387 Score = 119 bits (297), Expect = 9e-25, Method: Composition-based stats. Identities = 54/366 (14%), Positives = 118/366 (32%), Gaps = 44/366 (12%) Query: 8 PPFVTKERTRHGKIIYY---FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64 P + ++R G + Y + +G ++ L A + E I + Sbjct: 13 PVRIREKRLNDGNVSLYLDMYYRGARKKEGLKLYLVPETDAAAKLQNRNTRKLAEQIKAQ 72 Query: 65 R----------------KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-- 106 R K TL +++Y +A L+ S S + ++ Sbjct: 73 RILDIQEKGLVNWEDVKKARMTLSAWVAKY--TAEENGLSPASMRSKRNAQARVEEYLLY 130 Query: 107 ---GDFDYRKITTKHIRSGVESRKH----------TPSSAIQFLTSMRVLFKWAVRQEYV 153 +++ + + K + ++ F+ + AV + + Sbjct: 131 IGKPTLALKEVDKDFCKGFIAFLKTCTFNQGKKTLSSTTCRIFMNRLAAALNKAVSEGML 190 Query: 154 AINPCL---SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210 NP + E+P++ + T E+++Q + + AF F ++GLR SD Sbjct: 191 DRNPFKLLETKEKPQKLSAMREFLTIEELRQLMATPCRYDIVKKAFLFSCFTGLRYSDMM 250 Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVELPDGFM---KLLAMTPIGKETFFINNDKQKMNAT 267 + + + + L P + + ++ +T Sbjct: 251 TLKWSEIHTAADGKTLYIEHQQVKTKNTVTIPLSNEALKWMPRKSKDDDRVFHQLRITST 310 Query: 268 QFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 + +AG+ K H R +AT+ GA + + G +++ E Y K Sbjct: 311 TVEVVLGEWMQEAGIQKHITYHCSRHTAATLLLTLGADLYTVSKILGHRSIRMTEVYAKI 370 Query: 326 ADRIRL 331 D+ ++ Sbjct: 371 VDKKKI 376 >gi|34222987|sp|Q92LK1|XERC_RHIME RecName: Full=Tyrosine recombinase xerC Length = 318 Score = 119 bits (297), Expect = 9e-25, Method: Composition-based stats. Identities = 38/285 (13%), Positives = 78/285 (27%), Gaps = 30/285 (10%) Query: 76 SEYRKS-AHWGSLAVNSRISFESYFDQIIRKS-GDF-------DYRKITTKHIRSGVESR 126 + S A L+ + ++E Q + G D + +R + R Sbjct: 24 RRWLASLAEERRLSEKTVDAYERDTRQFLTFLTGHLAGPPRLSDICALRPADLRGFLAQR 83 Query: 127 KHTPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + + A L +R ++ R +V PK+ + T + + Sbjct: 84 RKGGAGARTLGRGLAGLRSFLRYLERNGLANAAGAGAVRSPKQPKSLPKALTDREALKVV 143 Query: 184 SF-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITV 235 + ++ L GLR +++ + S++ G V Sbjct: 144 TADAQLAEEPWIAARNAAVLTLLYGCGLRIAEALDLTPADFSGPVTSLRVTGKGGKTRIV 203 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-------FSIWFKAKATKAGVN--KSA 286 + + + + A + G+ + Sbjct: 204 PMIAAAAEAVETYRKLCPYHIEPEEPIFRGARGAKLQPAIIQREMQKLRAALGLPDSATP 263 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 H +R AT G + G ++ + YT G D RL Sbjct: 264 HALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYT-GVDSARL 307 >gi|121602161|ref|YP_989344.1| integrase [Bartonella bacilliformis KC583] gi|120614338|gb|ABM44939.1| integrase [Bartonella bacilliformis KC583] Length = 250 Score = 119 bits (297), Expect = 9e-25, Method: Composition-based stats. Identities = 87/247 (35%), Positives = 138/247 (55%), Gaps = 3/247 (1%) Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 +++ G Y+ I KHI +GVE RK TP++A FL ++ LFKWA+ Q + N L Sbjct: 2 KVLDSIGHLSYKVIQKKHIIAGVERRKETPATAQNFLKALNSLFKWAMEQGLLEKNSTLG 61 Query: 161 VERPK-RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219 V+ P + +G W++ D+ ++ W G+ R+ + LLY+GLR D+ R G + + + Sbjct: 62 VKAPPLKNKDGFIVWSEADIDKYYYHWPLGTHERVWIDILLYTGLRRGDAIRIGWKDVTD 121 Query: 220 NIFSIKTQK--TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277 NI IKT+K + + + + L + PIG+ETF + +K+ F F+ Sbjct: 122 NIIHIKTEKSKFQMDVFLPILPELAETLEIGPIGEETFICGKNGKKLTKEGFGNVFREAC 181 Query: 278 TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 A V KSAHG+RK +AT +A+AGAT +L A +GW + A YTK ADR RL ++ + Sbjct: 182 NVANVKKSAHGLRKLAATRAANAGATVAQLKAIFGWTEDNMASLYTKSADRKRLALETIK 241 Query: 338 RISSVVD 344 ++ + D Sbjct: 242 KLQKMRD 248 >gi|329113620|ref|ZP_08242399.1| Shufflon-specific DNA recombinase [Acetobacter pomorum DM001] gi|326697066|gb|EGE48728.1| Shufflon-specific DNA recombinase [Acetobacter pomorum DM001] Length = 424 Score = 119 bits (297), Expect = 9e-25, Method: Composition-based stats. Identities = 44/325 (13%), Positives = 96/325 (29%), Gaps = 16/325 (4%) Query: 10 FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYM-SALTGSTPKREYINSPRKKP 68 +V R +G+ Y HG + A A + Sbjct: 73 YVVHYR-ANGRFRRYTIGHHGPW-----TADKARDEAIKILARVKDGNDPNTERGEERTS 126 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSGVESRK 127 T+ + + L ++ ++ D I +K G +T + + + + Sbjct: 127 PTVSQFCKIFIERHVKTHLKSTTQAEYQRAIDLFITKKIGSRKMAAVTHSDVVTFHHTYR 186 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 H P A + L + +F A+ N + K + + + Q Sbjct: 187 HIPYQANRTLGVLSKMFSLAILWGVRTDNVNPCRGVKRYKEQKRERYLAAEEHQRLGKAL 246 Query: 188 EGSQ-----PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242 + ++ AF+ LL +G R + R +++ + I+ + Sbjct: 247 DDARSTMPEAVNAFQLLLLTGCRLREIQRLKWEYVFLDEGVIRLPDSKNGARTVQLGESA 306 Query: 243 KLLAMTPIGKETFFINNDKQKM--NATQFSIWFKAKATKAGV-NKSAHGVRKFSATISAD 299 L E +K + T ++ +AG+ + H +R A+ + + Sbjct: 307 IGLLGDIPRVEGNPYVITGRKDGGHLTDLEKPWRRIRKEAGLEDVRIHDLRHSFASDALE 366 Query: 300 AGATAHELMATYGWKTVDQAETYTK 324 G + G + + Y Sbjct: 367 LGEDLIMIGKLLGHRDLKSTARYAH 391 >gi|312621730|ref|YP_004023343.1| integrase family protein [Caldicellulosiruptor kronotskyensis 2002] gi|312202197|gb|ADQ45524.1| integrase family protein [Caldicellulosiruptor kronotskyensis 2002] Length = 329 Score = 119 bits (297), Expect = 9e-25, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 91/302 (30%), Gaps = 25/302 (8%) Query: 49 SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD 108 + L + + + T + +S + ++ ++ +++ ++ I+ G Sbjct: 13 AVLEDVLKFLKQQSELKNNSITFQEFVSYWFEAYAKIAVKQSTQKRYKELLKPAIQAIGS 72 Query: 109 FDYRKITTKHIRSGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 + I+ S S + ++ + +FK AV EY++ NP V P Sbjct: 73 KPLSDVKPLDIQKIYISLTGKISDCTILKLHRLLHEIFKHAVMWEYISNNPVKKVLPPSP 132 Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226 + + W E ++F + L++G+R + + I Sbjct: 133 EKKVFDVWDAETAKRFLEVIRNETIYYPV-LIALHTGMRAGEIVSLKWCDVNFEARIISV 191 Query: 227 QKTGT---------------IITVELPDGFMKLLAMTPIGKETFFINNDKQKM-----NA 266 K+ +V + D L + + ++ Sbjct: 192 VKSVRNNRGLKTSDVKTKTSKRSVYINDVLYSELKNLYEITKPKPDDFVCPRLPTGNLTV 251 Query: 267 TQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK 324 S FK + H +R AT+ G + G + A+TY+ Sbjct: 252 EYLSKRFKKLVKRYNFPVIRFHDLRHTFATLMLSLGVNTKIVAEILGHSDIKLTADTYSH 311 Query: 325 GA 326 Sbjct: 312 VL 313 >gi|282856243|ref|ZP_06265526.1| tyrosine recombinase XerC [Pyramidobacter piscolens W5455] gi|282586002|gb|EFB91287.1| tyrosine recombinase XerC [Pyramidobacter piscolens W5455] Length = 290 Score = 119 bits (297), Expect = 9e-25, Method: Composition-based stats. Identities = 40/263 (15%), Positives = 86/263 (32%), Gaps = 16/263 (6%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESR---KHTPS 131 EY ++ + N+ ++ Q + + +ITT IR+ + S + S Sbjct: 10 EYLRNNKAS--SENTVTNYAVDLAQFADFVENQETGPLEITTPLIRAFLRSLAGFGYANS 67 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM---QQFKSFWSE 188 S + L++++ + + + +A +P S+ P+ R +++ + Q Sbjct: 68 SIARKLSAVKAFELYLLEKGLIAADPAASIRSPRLPERLPRALSRDGIERLIQEAWKIKP 127 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAM 247 + E + G+R ++ + + K V + L Sbjct: 128 CLRNGTILEVMYGCGVRVAELVSLRWDDVDVDERWLKVRGKGDKERLVPFGRYAKEALTR 187 Query: 248 TPIGKETFFINNDKQK----MNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGA 302 K + A AG+ + H VR AT + GA Sbjct: 188 WKAECLPEPGFLFPGKGGAAITVRTVHRLVVQAARNAGLENVTPHSVRHSFATHMLEGGA 247 Query: 303 TAHELMATYGWKTVDQAETYTKG 325 + + L G +++ + Y K Sbjct: 248 SLNVLQELLGHESLLTTQRYLKV 270 >gi|166710518|ref|ZP_02241725.1| site-specific tyrosine recombinase XerC [Xanthomonas oryzae pv. oryzicola BLS256] Length = 345 Score = 119 bits (297), Expect = 9e-25, Method: Composition-based stats. Identities = 42/286 (14%), Positives = 93/286 (32%), Gaps = 29/286 (10%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF-------------DYRKITTKHIR 120 + E+ ++ ++ ++ ++ +G+ D ++ + H+R Sbjct: 44 VDEFLTYLQVERQVSAHTLDAYRRDLAALVAWTGERNTEDGAQQTATPVDSAQLDSAHLR 103 Query: 121 SGVE---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 V R +P S + L++ R + W ++ +A +P ++ PK + + + Sbjct: 104 QFVAAEHRRGLSPKSLQRRLSACRSYYAWLLKHGRIAASPAAALRAPKAPRKLPQVLDAD 163 Query: 178 DMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTII 233 + + G + R E SGLR S+ C + L + + K Sbjct: 164 EAVRLVEVPTDAPLGLRDRALLELFYSSGLRLSELCALRWRDLDLDSGLVMVLGKGSKQR 223 Query: 234 TVELPDGFMKLLAMTPIG-----KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 V + + L F ++ I K A + G+ + Sbjct: 224 LVPVGSHAIAALRQWRRDSGASADAHVFPGRAGGAISQRAVQIRIKQLAVRQGMFKDVHP 283 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R A+ ++ + G + + YT D L Sbjct: 284 HMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTH-LDFQHLA 328 >gi|160877191|ref|YP_001556507.1| tyrosine recombinase XerC [Shewanella baltica OS195] gi|160862713|gb|ABX51247.1| tyrosine recombinase XerC [Shewanella baltica OS195] gi|315269395|gb|ADT96248.1| tyrosine recombinase XerC [Shewanella baltica OS678] Length = 306 Score = 119 bits (297), Expect = 9e-25, Method: Composition-based stats. Identities = 32/275 (11%), Positives = 88/275 (32%), Gaps = 20/275 (7%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRKHTP 130 Y + L+ ++ ++ ++ D + + + + + + + +P Sbjct: 19 FERYLSTE--RQLSAHTVRNYLYELNRGSDLLPDGVHLLNVSREHWQQVLAKLHRKGLSP 76 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 S L++++ ++ +R+ + +NP + PK+ + + + Sbjct: 77 RSLSLCLSAVKQWGEFLLRESVIELNPAKGLSAPKQAKPLPKNIDVDAISHLLDIEGTDP 136 Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA 246 + + E SGLR ++ + +Q ++ ++ K V + + L Sbjct: 137 LSLRDKAMMELFYSSGLRLAELAALNLSSVQYDLKEVRVLGKGNKERIVPVGRLAIAALL 196 Query: 247 MTPIGKETFFINNDK-------QKMNATQFSIWFKAKAT--KAGVNKSAHGVRKFSATIS 297 ++ ++ ++++ V H +R AT Sbjct: 197 NWLNCRKQIPCEDNALFVTEKGKRLSHRSIQARMAKWGQEQALSVRVHPHKLRHSFATHM 256 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 +A A + G + + YT D L Sbjct: 257 LEASADLRAVQELLGHANLATTQIYT-SLDFQHLA 290 >gi|83720176|ref|YP_440728.1| site-specific tyrosine recombinase XerC [Burkholderia thailandensis E264] gi|167617501|ref|ZP_02386132.1| site-specific tyrosine recombinase XerC [Burkholderia thailandensis Bt4] gi|257140623|ref|ZP_05588885.1| site-specific tyrosine recombinase XerC [Burkholderia thailandensis E264] gi|83654001|gb|ABC38064.1| tyrosine recombinase XerC [Burkholderia thailandensis E264] Length = 306 Score = 119 bits (297), Expect = 9e-25, Method: Composition-based stats. Identities = 40/288 (13%), Positives = 91/288 (31%), Gaps = 31/288 (10%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTP 130 I++Y + L+ ++ ++ ++ + + +T +R + + + Sbjct: 6 IADYLSNLRHVRKLSDHTLRAYAHELGELRKLANGRPLESLTAVDMRGAVARAHAGGLSA 65 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 S L++ R ++W + + NP +V PKR + + +D + G+ Sbjct: 66 RSISHRLSAWRAFYRWFSQHVEMNANPVAAVRAPKRAKTLPKALSVDDAAALMDAPTAGT 125 Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------GTIIT 234 + E SGLR ++ V++ ++ + + Sbjct: 126 AEHLRDHAILELFYSSGLRLAELIGLDVEYTKDGDYRSEGWLDLAEAEVTVRGKGEKERK 185 Query: 235 VELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--K 284 V + + L F++ +M+ K A AG+ Sbjct: 186 VPVGRKAIDALNAWLAVRGEFVKRDARPLFLSVRGNRMSPGVVRERVKRAALAAGIPANV 245 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R AT + + G ++ + YT D L Sbjct: 246 HPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYT-SLDFQHLA 292 >gi|296133056|ref|YP_003640303.1| tyrosine recombinase XerC [Thermincola sp. JR] gi|296031634|gb|ADG82402.1| tyrosine recombinase XerC [Thermincola potens JR] Length = 302 Score = 119 bits (297), Expect = 9e-25, Method: Composition-based stats. Identities = 47/289 (16%), Positives = 95/289 (32%), Gaps = 32/289 (11%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSGVE 124 + ++ + + + S+++ Q++ + ++ IR + Sbjct: 4 YVDDFMVYLQVEKNASEKTLQSYQTDLFQMVDFISAEINITPENLQPDRVDHLVIRKFLA 63 Query: 125 SRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + S+ + L +MR F++ R+E + NP + V PK + + ++D++ Sbjct: 64 ELQRRGLSRSTIARKLAAMRTFFRFLCREEVITRNPLIEVATPKVEKRLPQFLYQDDIRN 123 Query: 182 ----FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVE 236 + G + R E L SG+R S+ + + N ++ G V Sbjct: 124 LIEAPERNTPRGLRDRAILETLYASGIRVSELVNLDMTDIDLNTGYVRVMGKGAKERVVP 183 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQK------------MNATQFSIWFKAKATKAGVNK 284 L + L T K+ ++ K + + Sbjct: 184 LGQFAINALKAYLTHGRTRLACRSKEPSEAVFLNKAGQRISVRSIRDIVNKYVRKISIRQ 243 Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 S H +R AT DAGA + G + + YT R L Sbjct: 244 RVSPHIIRHSFATHLLDAGADLRTVQELLGHVKMSTTQIYTHVT-REHL 291 >gi|293192780|ref|ZP_06609675.1| tyrosine recombinase XerD [Actinomyces odontolyticus F0309] gi|292820027|gb|EFF79025.1| tyrosine recombinase XerD [Actinomyces odontolyticus F0309] Length = 315 Score = 119 bits (297), Expect = 9e-25, Method: Composition-based stats. Identities = 41/288 (14%), Positives = 90/288 (31%), Gaps = 33/288 (11%) Query: 69 TTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVE 124 T+L+ L+ ++ + ++ ++ + + G + I+ + I Sbjct: 2 TSLEALVRDWVDYLRVEKGASAHTVSNYRRDVARYAFDMKSRGKVNVEDISPRDIEDYTM 61 Query: 125 SRKHTPSS--------AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + + ++R L K+A+ + V + + P++ + + Sbjct: 62 RLASGQVTGTPAAASSVARASAAIRGLHKYALTEGAVGTDAAAQLHAPRQGRHLPKALSV 121 Query: 177 EDMQQFKSFWS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 +++ + G + E L +G R S++ L + + G Sbjct: 122 DEVGRLLDAAHADDSPIGLRDAALLELLYATGARVSEAVSLSADDLDLDGDVPVVRLFGK 181 Query: 232 IIT--------------VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277 LA G FF+N+ ++ + A Sbjct: 182 GRKERVVPVGSFAVDALYAYRVRARPALAARGRGSTAFFLNSRGGALSRQSAWTAIRRAA 241 Query: 278 TKA--GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 A G S H +R AT + GA+ E+ G +V + YT Sbjct: 242 EAAQLGERVSPHTLRHSFATHLLEGGASVREVQELLGHASVATTQIYT 289 >gi|90421704|ref|YP_530074.1| site-specific tyrosine recombinase XerC [Rhodopseudomonas palustris BisB18] gi|90103718|gb|ABD85755.1| tyrosine recombinase XerC subunit [Rhodopseudomonas palustris BisB18] Length = 324 Score = 119 bits (297), Expect = 9e-25, Method: Composition-based stats. Identities = 37/308 (12%), Positives = 86/308 (27%), Gaps = 35/308 (11%) Query: 57 KREYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD------- 108 + P + + + L+ + ++ Q + + Sbjct: 8 APAPLELPGAAADLVAEA-TRWLAYLRSERRLSPKTLEAYTRDLRQCLTFLNEHWDAQVS 66 Query: 109 -FDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164 + + IR+ + SR+ S ++ L +R ++ R+ + ++ P Sbjct: 67 IKRFAALEAGDIRAFMASRRADEIGGRSLMRALAGLRSFGRFLEREGKGKVGALSAIRAP 126 Query: 165 KRKTEGIRPWTKEDMQQFKSF---------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215 K +P ++ ++ L SGLR S++ + Sbjct: 127 KVGKSLPKPIQIAGAKRLADATERAGENREPWIWARDAAVMALLYGSGLRISEALGLKRR 186 Query: 216 HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ----------KMN 265 + TG + +L++ +Q ++ Sbjct: 187 DVPLPGKGDTLIVTGKGNKTRMVPVLQNVLSLIQDYVAVCPHPLPQQGPIFVGARGGPLS 246 Query: 266 ATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + + G+ + H +R AT G + G ++ + YT Sbjct: 247 PRIIQLTMERLRGALGLPDSATPHALRHSFATHLLSRGGELRAIQELLGHTSLSTTQIYT 306 Query: 324 KGADRIRL 331 G D RL Sbjct: 307 -GIDSERL 313 >gi|237654487|ref|YP_002890801.1| tyrosine recombinase XerC [Thauera sp. MZ1T] gi|237625734|gb|ACR02424.1| tyrosine recombinase XerC [Thauera sp. MZ1T] Length = 304 Score = 119 bits (297), Expect = 9e-25, Method: Composition-based stats. Identities = 42/279 (15%), Positives = 90/279 (32%), Gaps = 21/279 (7%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HT 129 + + ++ + ++ + ++R + + + IR V Sbjct: 18 QAWLAWLATQ--RRVSPLTLTAYRAGLQALLRLAEEHPPESLQPADIRRFVARLHGEGQQ 75 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 S + L++ R ++W VR+ V INP L + PK + R + E + Sbjct: 76 GRSIARHLSAWRGFYRWLVREHGVRINPALGIRPPKSPSTLPRVLSPEQANALLDPEPQN 135 Query: 190 S---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246 + FE SGLR ++ + + + T +P G + A Sbjct: 136 LLEIRDIAMFELFYSSGLRVAELAGLDIDSGLDLAEGLVTVTGKRQRQRTVPVGGKAIAA 195 Query: 247 MTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 + P + F+ D +++ + +A G+ + H +R A Sbjct: 196 LRPWLEIRAGLAAAGERALFVTRDGHRLSTRGIASRLGTRAQALGLGVHVHPHMLRHSFA 255 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 + + + G ++ + YT D L Sbjct: 256 SHLLQSSGDLRAVQELLGHASIRSTQIYTH-LDFQHLAA 293 >gi|194429446|ref|ZP_03061969.1| integrase [Escherichia coli B171] gi|194432824|ref|ZP_03065108.1| integrase [Shigella dysenteriae 1012] gi|194412507|gb|EDX28806.1| integrase [Escherichia coli B171] gi|194418812|gb|EDX34897.1| integrase [Shigella dysenteriae 1012] gi|195183060|dbj|BAG66620.1| putative integrase [Escherichia coli O111:H-] gi|332090165|gb|EGI95264.1| integrase [Shigella dysenteriae 155-74] Length = 334 Score = 119 bits (297), Expect = 9e-25, Method: Composition-based stats. Identities = 45/314 (14%), Positives = 94/314 (29%), Gaps = 10/314 (3%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 ++ G+ + R + R+ + + + ++ + TL Sbjct: 4 KKLEDGRYLLDIRPNGRKGKRVRKVFDKKSVAVATERYIMANAEKREYIQGYRDRRTLND 63 Query: 74 LIS-EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132 L+ + A R + +++ D K+ RS + PSS Sbjct: 64 LLELWWMYHGQHRRKAEEDRKQLRNIINELGADMQAVDLDKLKIIAWRSQKIAEGLKPSS 123 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 A +++ + +F + + + + + EG Sbjct: 124 ANRYMNRLSGMFTVLKKIGLWDAEHPVRGISILYVSPREMAFLSQKEVALLLDTLEGDYW 183 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252 R+A L +G R S++C+ + + +N + K G TV + + + G Sbjct: 184 RVALLC-LSTGARWSEACKLRGEQIVHNRVTFLETKNGRKRTVPISQAVCEAIKTRETGG 242 Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYG 312 +F + K ++AH +R A+ G L G Sbjct: 243 LFEVK--------YREFCLALKRVKPDLPKGQAAHVLRHTFASHFVMNGGNIIALQKILG 294 Query: 313 WKTVDQAETYTKGA 326 T+ Q Y A Sbjct: 295 HATIQQTMAYAHFA 308 >gi|319407841|emb|CBI81494.1| integrase/recombinase XerD [Bartonella sp. 1-1C] Length = 312 Score = 119 bits (297), Expect = 9e-25, Method: Composition-based stats. Identities = 41/310 (13%), Positives = 100/310 (32%), Gaps = 42/310 (13%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVES 125 +I + + +V + ++++ K + + ++ S ++ Sbjct: 4 DAVIDHFLEMMSAERGASVCTLLAYQHDLQWAQNKLSSHSISFFSAQREDLINLLSLMQK 63 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-- 183 +S + L+++R F++ + +P ++ P++ + +++ + + Sbjct: 64 AGCAATSQARRLSTLRQFFQFLYAEGLREDDPSSDIDSPRQGRPLPKIISEDAVTKLLDF 123 Query: 184 ------------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTG 230 + + ++ E L +GLR S+ VQ ++ I K Sbjct: 124 AQLETEQAESGTQNYYRALRFQVLLEMLYATGLRISELVSLPVQAVRGKEQFILVRGKGE 183 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ---------FSIWFKAKATKAG 281 V L + ++L ++ A + K A +AG Sbjct: 184 KERVVLLSEKARQILLQWLSVRDQRKDATSIYLFPARSSTGYIARQFVARGLKDLAKRAG 243 Query: 282 V---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338 + N S H +R A+ GA + G + + YT + R Sbjct: 244 IQSENFSPHVLRHAFASHLLQNGADLRAVQHLLGHCDISTTQIYTHVLE---------AR 294 Query: 339 ISSVVDSDDP 348 + +V+ P Sbjct: 295 LHRLVNEYHP 304 >gi|294491667|gb|ADE90423.1| integrase/recombinase, phage integrase family [Escherichia coli IHE3034] gi|323161587|gb|EFZ47473.1| integrase [Escherichia coli E128010] Length = 334 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 45/314 (14%), Positives = 94/314 (29%), Gaps = 10/314 (3%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 ++ G+ + R + R+ + + + ++ + TL Sbjct: 4 KKLEDGRYLLDIRPNGRKGKRVRKVFDKKSVAVATERYIMANAEKREYIQGYRDRRTLND 63 Query: 74 LIS-EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132 L+ + A R + +++ D K+ RS + PSS Sbjct: 64 LLELWWMYHGQHRRKAEEDRKQLRNIINELGADMQAVDLDKLKIIAWRSQKIAEGLKPSS 123 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 A +++ + +F + + + + + EG Sbjct: 124 ANRYMNRLSGMFTVLKKIGLWDAEHPVRGISILYVSPREMAFLSQKEVALLLDTLEGDYW 183 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252 R+A L +G R S++C+ + + +N + K G TV + + + G Sbjct: 184 RVALLC-LSTGARWSEACKLRGEQIVHNRVTFLETKNGRKRTVPISQAVCEAIKTRETGS 242 Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYG 312 +F + K ++AH +R A+ G L G Sbjct: 243 LFEVK--------YREFCLALKRVKPDLPKGQAAHVLRHTFASHFVMNGGNIIALQKILG 294 Query: 313 WKTVDQAETYTKGA 326 T+ Q Y A Sbjct: 295 HATIQQTMAYAHFA 308 >gi|239906151|ref|YP_002952890.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1] gi|239796015|dbj|BAH75004.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1] Length = 347 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 48/343 (13%), Positives = 91/343 (26%), Gaps = 18/343 (5%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMS-----ALTGSTPKREYINSPRKKPT 69 R +G +R G++ + A GS R + Sbjct: 6 RKNNGTYYVAYRNAEGKQTTKTFGKGREGRRAAQKFDKQVKDHGSVQPRTPEAISEEVAV 65 Query: 70 T----LKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVE 124 T L L Y S ++ + +S+ +I +I I V Sbjct: 66 TGKLYLDQLAQMYINSRKVEGTSIRTLNEIKSFLKRHLIPVFAQRPVEEIKYDEIVKIVA 125 Query: 125 S--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 +P + ++L+ ++ +FK+ V + + NP +P+ T +D+QQ Sbjct: 126 KAYENRSPVTRGRYLSYLKTVFKFGVEHDLIEKNPLRQWHKPRE-KPRDTKLTVDDLQQI 184 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELPDGF 241 K+ + + L S+ + Sbjct: 185 KAAAEPHLAWAIEVAWNLGVRTGPSELLALTWDDISWAEKTINVFATKTNTRRTVPLSDE 244 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISAD 299 + Q S + +AG+ + VR AT + Sbjct: 245 FLARLQEKKATAQCERIVEYHGRPVKQISRAMRTACRRAGITYPVVLYDVRHLFATTLLN 304 Query: 300 AGATAHELMATYGWKTVDQAE-TYTKGA-DRIRLGIKNSRRIS 340 G + G ++ Y D R I R+ Sbjct: 305 EGGDLSAVSKLMGHSSIQMTANNYYHLLGDEKRRTIARLPRLE 347 >gi|254453365|ref|ZP_05066802.1| phage integrase [Octadecabacter antarcticus 238] gi|198267771|gb|EDY92041.1| phage integrase [Octadecabacter antarcticus 238] Length = 385 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 38/299 (12%), Positives = 88/299 (29%), Gaps = 15/299 (5%) Query: 51 LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDF 109 L G P + + + ++ L +Y + + S D++ + + G Sbjct: 84 LRGGDPVADAVTARTAP--SIADLAEQYYEIHALPKKRKKGAANDRSMLDRLVLPRLGKQ 141 Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169 ++ + I++ S K TP A + L+ + +F+ ++ NP VE+ + Sbjct: 142 KVLEVCHRDIQTFHNSLKATPYQANRVLSLLSKMFELSISWGMRGENPAKGVEKFHEEK- 200 Query: 170 GIRPWTKEDMQQFKSF--WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227 R + +++ + + + A L +G R + A + Sbjct: 201 RHRWLSSDELSRLGAALDRHRNQKAANAIRLQLLTGARIGEVLSAQWADFDLDRGVWVKP 260 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-------FSIWFKAKATKA 280 T K + ++++ A Sbjct: 261 SHHTKQKRTEHLPLAKAAVALLEKVHEAQRSGSNFVFPGRSKIKPLVDLKKFWRSLIADA 320 Query: 281 GV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSR 337 + + H R A+ +G + + G + Y AD +R + Sbjct: 321 DIVDYRIHDNRHTHASQLVSSGMSLAIVGRLLGHTNPMTTQRYAHIADEPLRAAAEVMA 379 >gi|121601884|ref|YP_988378.1| tyrosine recombinase XerD [Bartonella bacilliformis KC583] gi|120614061|gb|ABM44662.1| tyrosine recombinase XerD [Bartonella bacilliformis KC583] Length = 312 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 36/287 (12%), Positives = 90/287 (31%), Gaps = 33/287 (11%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRK 127 +I + + + ++ +++ K + + + S + Sbjct: 6 IIDRFLEMMSAERGASAHTLAAYQHDLQWAQDKLSSCSVSLFSARKEDLISLLSLMHKAG 65 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT------------ 175 +S + L+++R +++ ++ +P ++ P++ + + Sbjct: 66 FAATSQARRLSTLRQFYQFLYAEKLREDDPSGDIDAPRQGHPLPKIMSEDVVTKLLDFAQ 125 Query: 176 --KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTI 232 + + + ++ E L +GLR S+ VQ ++ I K G Sbjct: 126 LETNQAEYGSKNYFRALRLQVLIEMLYATGLRISELVSLPVQTVRGKEQYILVRGKGGKE 185 Query: 233 ITVELPDGFMKLLAMT---------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 V L ++L+ F ++ + + K A +AG+ Sbjct: 186 RMVLLSAKARQVLSEWLVLRDQGKDATSPYLFPAHSSTGYIARQFIARGLKDLAKRAGIR 245 Query: 284 ---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 S H +R A+ GA + G + + YT + Sbjct: 246 GDCFSPHVLRHAFASHLLQNGADLRAVQHLLGHCDISTTQIYTHVLE 292 >gi|153002474|ref|YP_001368155.1| tyrosine recombinase XerC [Shewanella baltica OS185] gi|151367092|gb|ABS10092.1| tyrosine recombinase XerC [Shewanella baltica OS185] Length = 306 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 33/275 (12%), Positives = 88/275 (32%), Gaps = 20/275 (7%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRKHTP 130 Y + L+ ++ ++ ++ D + + + + S + + +P Sbjct: 19 FERYLSTE--RQLSAHTVRNYLYELNRGSDLLPDGVHLLNVSREHWQQVLSKLHRKGLSP 76 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 S L++++ ++ +R+ + +NP + PK+ + + + Sbjct: 77 RSLSLCLSAVKQWGEFLLREGVIELNPAKGLSAPKQAKPLPKNIDVDAISHLLDIEGTDP 136 Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA 246 + + E SGLR ++ + +Q ++ ++ K V + + L Sbjct: 137 LSLRDKAMMELFYSSGLRLAELAALNLSSVQYDLKEVRVLGKGNKERIVPVGRLAIAALQ 196 Query: 247 MTPIGKETFFINNDK-------QKMNATQFSIWFKAKAT--KAGVNKSAHGVRKFSATIS 297 ++ ++ ++++ V H +R AT Sbjct: 197 NWLNCRKQIPCEDNALFVTEKGKRLSHRSIQARMAKWGQEQALSVRVHPHKLRHSFATHM 256 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 +A A + G + + YT D L Sbjct: 257 LEASADLRAVQELLGHANLATTQIYT-SLDFQHLA 290 >gi|319897879|ref|YP_004136076.1| site-specific tyrosine recombinase [Haemophilus influenzae F3031] gi|329122492|ref|ZP_08251077.1| site-specific tyrosine recombinase XerC [Haemophilus aegyptius ATCC 11116] gi|317433385|emb|CBY81765.1| site-specific tyrosine recombinase [Haemophilus influenzae F3031] gi|327473182|gb|EGF18604.1| site-specific tyrosine recombinase XerC [Haemophilus aegyptius ATCC 11116] Length = 299 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 37/271 (13%), Positives = 88/271 (32%), Gaps = 20/271 (7%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESR 126 ++ Y ++ ++ +++ D I+ D T + I + + + Sbjct: 4 ALNRYWDYLRIERQMSPHTITNYQHQLDATIKILAQQDIHAWTQVTPSVVRFILAESKKQ 63 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 S L+++R + V+Q + +NP + PK+ + E +QQ + Sbjct: 64 GLKEKSLALRLSALRRFLSFLVQQGELKVNPATGISAPKQGKHLPKNMDGEQVQQLLAND 123 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 + R E + SGLR S+ + + + ++ V Sbjct: 124 SKEPIDIRDRAILELMYSSGLRLSELQGLDLNSINTRVREVRVIGKGNKERVVPFGRYAS 183 Query: 243 KLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293 + E F++ +++ + + G+ + + H +R Sbjct: 184 HAIQEWLKVRALFNPKDEALFVSQLGNRISHRAIQKRLETWGIRQGLNSHLNPHKLRHSF 243 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324 AT +A + + G + + YT Sbjct: 244 ATHMLEASSDLRAVQELLGHSNLSTTQIYTH 274 >gi|254368999|ref|ZP_04985012.1| integrase/recombinase XerC [Francisella tularensis subsp. holarctica FSC022] gi|157121920|gb|EDO66090.1| integrase/recombinase XerC [Francisella tularensis subsp. holarctica FSC022] Length = 292 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 31/255 (12%), Positives = 88/255 (34%), Gaps = 15/255 (5%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMR 141 + + + +++ Q+ + D + +T I ++ ++P + + L+S+R Sbjct: 18 KNYSQETINNYQRDLLQLNQALSDKNIISLTHSDILIWIKRLHAQGNSPKTLQRKLSSVR 77 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRLAFEF 198 F + + E V+ NP ++ PK + +++ + F+ Sbjct: 78 SFFNFLINSEIVSQNPANGIKAPKDSKRLPKVVNTDELAYLLDINPSNDIEARDIACFDL 137 Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFI 257 L G+R S+ ++ + + +I+ V + L +++ Sbjct: 138 LYSCGIRLSELSSVELKDISISQKNIRVTGKGNKQRIVYFGTKTLSNLNRWLKIRDSLKP 197 Query: 258 NNDKQKMNATQFSIWFKAKATKAGV--------NKSAHGVRKFSATISADAGATAHELMA 309 ++D ++ + ++ + + + H +R A+ D+ + Sbjct: 198 SSDYLFISRDGKHLTNRSIQKRLEIFAQKYASRHIHPHMLRHSFASHVLDSSKDLLAVKD 257 Query: 310 TYGWKTVDQAETYTK 324 G + + YT Sbjct: 258 LLGHADISSTQIYTH 272 >gi|294056182|ref|YP_003549840.1| integrase family protein [Coraliomargarita akajimensis DSM 45221] gi|293615515|gb|ADE55670.1| integrase family protein [Coraliomargarita akajimensis DSM 45221] Length = 307 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 40/281 (14%), Positives = 84/281 (29%), Gaps = 29/281 (10%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSG--VESR 126 + + L+ + ++ + + + D+ I + +RS + R Sbjct: 12 LDAFCAHLALERRLSEYTVRNYRHAVEVFVESVQERGNWQGDFAAIRSVDVRSFLVDQGR 71 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 K + + ++ +R + + +Q V NP V PK + T+ M++ Sbjct: 72 KVSRRTLHNQVSGLRAFYLYLRKQGQVESNPFAGVSLPKLDKPLPKFLTESQMRRLLDAP 131 Query: 187 -----------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIIT 234 + + L E L GLR S+ C + + Sbjct: 132 VELWKAGKLSEFDAFRDSLILELLYGGGLRVSELCALNHGAIDLQRGVARVIGKGQKERL 191 Query: 235 VELPDGFMKLLAMTPIGK-------ETFFINNDKQKMNATQFSIWFKAKATKAGVN--KS 285 L ++ L + + ++M K +A + + Sbjct: 192 CPLGPVAIQCLKTFVDRFKLSAELDQAVACQRNGRRMEPRMVQKQLKLHLAQAELPSDMT 251 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 H +R AT D GA + G + + YT + Sbjct: 252 PHKLRHSYATHLLDNGADLRAVQELLGHANLSTTQVYTHVS 292 >gi|238855032|ref|ZP_04645361.1| integrase [Lactobacillus jensenii 269-3] gi|282934072|ref|ZP_06339352.1| phage integrase [Lactobacillus jensenii 208-1] gi|238832403|gb|EEQ24711.1| integrase [Lactobacillus jensenii 269-3] gi|281301874|gb|EFA94138.1| phage integrase [Lactobacillus jensenii 208-1] Length = 367 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 45/355 (12%), Positives = 109/355 (30%), Gaps = 31/355 (8%) Query: 20 KIIYYF---RKGHGRRIRLPY-PHESTFIPAYMSALTG-STPKREYINSPRKKPTTLKWL 74 + +Y G+++R + + F +A+ R + L Sbjct: 14 RSTWYITEIDPDTGKKVRKRKSKYVTGFATKRQAAIAASEFETRRNTGENILENPALFDY 73 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSS 132 +Y + + + I++ + +I + + IT ++ + K++ S+ Sbjct: 74 AEDYIELNVKNRVRPATLIAYRNSIKRIEDNFPNIPLKSITRSMFQAFLNQISIKYSKST 133 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 Q + K A+ + + V+ P++ + + S Sbjct: 134 VNQTAVVFSQIMKLALADGIIVRDVTSFVQIPEKAQDKRKIDYLSLSDVKALVQHIKSNL 193 Query: 193 RLAFEFLLY------SGLRCSDSCRAGVQHLQNNIFSIKTQKTG-----------TIITV 235 + + +G R S+ L I Q+ ++ TV Sbjct: 194 STSKVGPYFILTAIQTGARLSEIAALTWNDLTPTSIKITKQRNRDGVVSKPKTESSVRTV 253 Query: 236 ELPDGFMKLLAMTPIGKET-FFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRK 291 + +L + K+ F + + + + + + G+ + H +R Sbjct: 254 SITKELYNILQDLKVNKKDLIFEQPNGIVPDPSSLNFTLRRLLKECGIKRHGFHFHSLRH 313 Query: 292 FSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGIKNSRRISSVVDS 345 + +A + G K V E Y D + + R+I SV+++ Sbjct: 314 THVALLLNADVDILTISQRLGHKNVSTTTEVYAYLLDEKKKSEE--RKIKSVLET 366 >gi|37522020|ref|NP_925397.1| integrase/recombinase [Gloeobacter violaceus PCC 7421] gi|35213019|dbj|BAC90392.1| glr2451 [Gloeobacter violaceus PCC 7421] Length = 289 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 37/269 (13%), Positives = 86/269 (31%), Gaps = 13/269 (4%) Query: 71 LKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT----KHIRSGVES 125 L+ + + SLA N+ +++ ++ R T H + + Sbjct: 3 LRDAVEHWLDHLIAARSLAGNTLKAYQRDLEEFARFVESEHLDWQTFGATGTHHFAQILQ 62 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + HTP SA + L+++R ++ A+ Q + P G+ + Sbjct: 63 KTHTPRSAARKLSALRTFYRHALVQGWAGGVPPACTRTLPSAERGLPRILSVAQTEKLIE 122 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKL 244 + E L +GL+ + C V+ + V + + + Sbjct: 123 SAASPLESAVLELLYATGLKAGELCELRVRDVAFAEAYLSVQPAASQPRVVPVGEPALAA 182 Query: 245 LAMT-----PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297 + + + F+ + +N + A ++ ++ + +R A Sbjct: 183 VEAYLGSEPVLPERWLFVGRQNRPLNRFHIYRIVREAAARSAIDWPVTPDTLRHSFAVHL 242 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGA 326 + GA + G ++ YT+ A Sbjct: 243 LEGGADLATVRELLGHASLATTGIYTRLA 271 >gi|237811210|ref|YP_002895661.1| phage integrase family protein [Burkholderia pseudomallei MSHR346] gi|237503525|gb|ACQ95843.1| phage integrase family protein [Burkholderia pseudomallei MSHR346] Length = 443 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 49/354 (13%), Positives = 111/354 (31%), Gaps = 25/354 (7%) Query: 9 PFVTKERTRHGKI----IYYFRKGHGRRIRLPYPHESTFIPAY-----MSALTGSTPKRE 59 P + T G+ Y G R+ ++ E T A A Sbjct: 29 PGFLCKVTASGRKVFMLQYRTNSGERRKPKIGLFGELTVDQARSIAQDWLADVRKGSDPS 88 Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKH 118 ++ T+K L +++ + ++ +++ D+ I+ K G ++T Sbjct: 89 AAKQAARQAPTVKELCTQFIEEYSKTRNKPSTVETYQDQIDRYIVPKLGRIKVPELTRMD 148 Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + + ++A + L +R + A Y PK + G + ++ Sbjct: 149 VTAMMRDMVKISATANRVLACLRKMLNMAEVWGYRPDGSNPCRHVPKYRESGETRYITDE 208 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--- 235 + + + L +R A + ++ ++ + + Sbjct: 209 ELARLYAYLDRADIEGLEHPTLTLAIRLQFEFSARMSEIRMLQWAWIDFDSRRVAWPDSK 268 Query: 236 ------ELPDGFMKLLAMTPI----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 + + +LL+ I + + ++ + ++ +A V Sbjct: 269 TGGISKPMSEAAHQLLSNAHRIEGSPYVCPSIYDKEIPLSEGTYYNSWRRILQRAKVPHV 328 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSR 337 HG+R +AT A++G MA KTV Y D +R + Sbjct: 329 GTHGIRHRAATDIANSGVPVKVGMALTAHKTVSMFMRYVHTEDDPVRAAAEKVA 382 >gi|115377467|ref|ZP_01464669.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1] gi|310823313|ref|YP_003955671.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1] gi|115365511|gb|EAU64544.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1] gi|309396385|gb|ADO73844.1| Phage integrase family protein [Stigmatella aurantiaca DW4/3-1] Length = 381 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 50/375 (13%), Positives = 102/375 (27%), Gaps = 37/375 (9%) Query: 1 MTPSLRLPPFVTKERTRHGKIIY----YFRKGHGRRIRLP-------YPHESTFIPAYMS 49 M+ +R P++ + GK + F+ G R + S Sbjct: 1 MSVKVR--PYI-----KRGKSGWEVDIMFKWPDGELYRERVKAPVSSKSGAKAWGEQRQS 53 Query: 50 ALTGSTPKREYINSPRKKPTTLKWLISEYRK-SAHWGSLAVNSRISFESYFD-QIIRKSG 107 L + + + P L+ + + + A ++ IS ES ++ + G Sbjct: 54 ELLARGKQAKEEVKRKAVPM-LEEFVPRFIEGYARANRQKPSTIISKESVLRIYLVPRFG 112 Query: 108 DFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 +T + I+ K + + LT L K AV + P Sbjct: 113 QRRLDTLTHEDIQRLKADLKDLSTKTVNNVLTVFNKLLKVAVEWGVLDKLPVTIKLLKAP 172 Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-------- 218 K +E + ++ + + +GLR + + Sbjct: 173 KPTMSFYDFEEYERLVEAASKLDWRIQAMVLLGGDAGLRSGEILALEWTDVDFRRGQLHI 232 Query: 219 ----NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274 + L + ++ Q S W Sbjct: 233 RQSEWQGHVTVPKGGRDRRVPMTKRLAALLATNRHLKGPRVLYRDNGQPATRAAVSRWMA 292 Query: 275 AKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR-L 331 +AG+ + H +R + A GA A + G + + + Y + + Sbjct: 293 KAQKRAGLPVTRALHVLRHTFCSPLAMRGAPAKAIQELAGHENLSTTQRYMHLSPAAKDA 352 Query: 332 GIKNSRRISSVVDSD 346 I +S + D Sbjct: 353 AISLLDEAASQISGD 367 >gi|325479493|gb|EGC82589.1| phage integrase, N-terminal SAM domain protein [Anaerococcus prevotii ACS-065-V-Col13] Length = 329 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 47/305 (15%), Positives = 97/305 (31%), Gaps = 52/305 (17%) Query: 74 LISEYRKSAH-WGSLAVNSRISFESYFD-----------------QIIRKSGDFDYRKI- 114 LI++Y L+ N+ + + + ++ D + I Sbjct: 9 LITDYLNYLKSIRGLSSNTIKEYSYDLNLLIRFMIVRKIYYGNIVKFNKEFNDDEINSII 68 Query: 115 ------------TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSV 161 ++ + T S+ + +++++ +K+ E + N + Sbjct: 69 NPSFFETLTLQDFYSYLSYLDNEKNDTASTRSRKISAIKSFYKYLYSEIEVINSNVSEKL 128 Query: 162 ERPKRKTEGIRPWTKE------DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215 PK T D + S+ L +G+R S+ + Sbjct: 129 TNPKISQRQPVYLTLTETERLLDTINNEKNDFLRSRDLAIVFTFLTTGMRLSELVSIDIT 188 Query: 216 HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF---------FINNDKQKMNA 266 + N+ F+I + TV L D ++L+ + + + FI+ K++++ Sbjct: 189 DIVNDHFNIIGKGN-KERTVYLTDNCLQLIYSYILVRAKYIGDKDIDALFISTRKKRISN 247 Query: 267 TQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETY 322 KAG + S H +R +AT+ G L G V + Y Sbjct: 248 RAVQSTIDKYLKKAGFDTSIYSTHKLRHTAATLMYKYGNVDIRALKDILGHSNVSTTQIY 307 Query: 323 TKGAD 327 T D Sbjct: 308 THLDD 312 >gi|254517350|ref|ZP_05129407.1| phage integrase family protein [gamma proteobacterium NOR5-3] gi|219674188|gb|EED30557.1| phage integrase family protein [gamma proteobacterium NOR5-3] Length = 391 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 49/351 (13%), Positives = 106/351 (30%), Gaps = 32/351 (9%) Query: 21 IIYYFRKGHGRRI--RLPYPHESTFIPAYMSALTGSTPK-----REYINSPRKKPTTLKW 73 + +R + +L + T A + A + RK T Sbjct: 47 VYLRYRNTSNKTAHAKLGTTLDLTLKDARVKARQLKAEIALGADPQAEAQQRKAVPTWHA 106 Query: 74 LI-SEYRKSAHWGSLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVESRKH 128 Y A ++ ++++ D ++ + G IT + ++ + Sbjct: 107 FFTDSYLPHAKQ------TKRTWKNDADMHRLRLGPRFGATPINGITRQEVQQFHNELRE 160 Query: 129 T---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS- 184 + P++A L +R AV + NP V++ E R T ++++ Sbjct: 161 SGMAPATADHHLKLLRHALNLAVDWGLLQANPAARVKQFNVFNEVERYLTDPELRRLLEV 220 Query: 185 -FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----TIITVELPD 239 E A +LL +G R ++ A + T + ++ L D Sbjct: 221 LKAHENRPVACAVLWLLATGARVGEALAAEWPDIDRGNRVWVVHATNSKSKKLRSIPLND 280 Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNA--TQFSIWFKAKATKAGVN-KSAHGVRKFSATI 296 + +L + + AG+ + H +R A++ Sbjct: 281 VALGVLDELQTLPRYQPGGRLFIGKRGPLGTINKVWYGIRDAAGLESFTLHCLRHSHASL 340 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADR--IRLGIKNSRRISSVVDS 345 ++G + +E+ G Y+ + S RI + + Sbjct: 341 LVNSGHSLYEVQRVLGHSDPKVTMRYSHLSQESLQSAANSASDRIKAAMGE 391 >gi|144897317|emb|CAM74181.1| Tyrosine recombinase xerD [Magnetospirillum gryphiswaldense MSR-1] Length = 306 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 37/282 (13%), Positives = 81/282 (28%), Gaps = 28/282 (9%) Query: 76 SEYRKSAHWGSLAV-NSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTP- 130 + + A N+ ++ D + G + + + Sbjct: 8 EAFLEMMAVERAAAINTLDAYRRDLDDLDNYLTKRGGAPLSA-RPADLAGYMRALADAGM 66 Query: 131 --SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--- 185 + + L+ +R + + + + A +P ++ P+ + +++ + Sbjct: 67 ATRTQARRLSCLRQFYGFVFAEGWRADDPTSRLDAPRLGRSLPKYLSEKQVGDLLDAARA 126 Query: 186 --WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFM 242 +G E L +GLR S+ + + + K V L D Sbjct: 127 LESPQGEMMTALLELLYATGLRVSELVGLPYSAVARDPALLVVRGKGDKERMVPLSDPAR 186 Query: 243 KLLAMT-----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 L + + F + + F+ KAG++ S H Sbjct: 187 AALRVWLPLRQDLLGKKKTSRWLFPGSGKTGHLTRAGFARALLRVGMKAGIDPRRLSPHV 246 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 +R AT GA + G + E YT + + Sbjct: 247 LRHAFATHLLAHGADLRVVQELLGHADIATTEIYTHVLEEPK 288 >gi|146296400|ref|YP_001180171.1| phage integrase family protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409976|gb|ABP66980.1| phage integrase family protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 326 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 42/317 (13%), Positives = 95/317 (29%), Gaps = 27/317 (8%) Query: 51 LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110 L + + + T + ++ + ++ ++ +++ + I+ G Sbjct: 12 LEDILKILKQHSDLKSSSITFQEFVNYWFEAYAKIAVKQSTQKRYRELLIPAIKAIGTKP 71 Query: 111 YRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168 I I+ + K + S+ ++ + +FK AV EY++ NP V P + Sbjct: 72 LSDIKPLDIQKIYMNLTGKLSDSTILKLHRLLHEIFKHAVMWEYISDNPVKKVLPPSPEK 131 Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228 + W E ++F + L++G+R + + I K Sbjct: 132 KVFDVWDVETAKRFLEVIRNETIYYPV-LIALHTGMRAGEIVSLKWYDVNFEARIISVVK 190 Query: 229 TGT---------------IITVELPDGFMKLLAMTPIGKETFFINNDKQKM-----NATQ 268 + +V + D L + + ++ Sbjct: 191 SVRNNRGLKTSDVKTKTSKRSVYINDVLFSELKNLYETIKPKPDDFVCPRLPTGNLTVGY 250 Query: 269 FSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA 326 S FK + H +R AT+ G + G + A+TY+ Sbjct: 251 LSKRFKLLVKRYNFPVIRFHDLRHTFATLMLSLGVNTKIVAEILGHSDIKLTADTYSHVL 310 Query: 327 DRIRLGIKNSRRISSVV 343 + + S + Sbjct: 311 PT--MQESAMKEFSKLW 325 >gi|307267401|ref|ZP_07548893.1| integrase family protein [Thermoanaerobacter wiegelii Rt8.B1] gi|306917586|gb|EFN47868.1| integrase family protein [Thermoanaerobacter wiegelii Rt8.B1] Length = 330 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 44/303 (14%), Positives = 99/303 (32%), Gaps = 43/303 (14%) Query: 74 LISEYRKS-AHWGSLAVNSRISFESYFDQIIRK-------------SGDFDYRKITTKHI 119 L+ E+ + + + N+ ++ +R + D + I Sbjct: 20 LLEEFLNYFSTVKARSYNTVKAYAYDLVLFLRFLKQRRGKVSPNVEFDEIDISDVDVDLI 79 Query: 120 RSGV------------ESRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKR 166 S R +TP + + + S+R + + ++ + ++ NP +E PK Sbjct: 80 ESVDLNDLYAYLNFVANERSNTPPARARKVASLRSFYNYLYKKAKVLSKNPTQELESPKL 139 Query: 167 KTEGIRPWTKEDMQQFKSFW--SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 T ++ ++ + + L GLR S+ + ++++ + Sbjct: 140 SVRQPIYLTLDESKKLLNSIDGPFKERDYAIITLFLNCGLRVSELVNINLDDIKDDKLT- 198 Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAK 276 K TV L D + + + + + K ++++ K Sbjct: 199 VIGKGNKQRTVYLNDACINAINTYLKVRPKEGVKDKKALFLSKRLKRISVKTVQYTVKKH 258 Query: 277 ATKAGV---NKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD-RIRL 331 A + SAH +R +AT+ G L G V + YT D +++ Sbjct: 259 LKNANLEGKKYSAHKLRHTAATLMYRYGNVDIRTLQKLLGHSNVSTTQIYTHVDDSQLKE 318 Query: 332 GIK 334 + Sbjct: 319 AVN 321 >gi|220918789|ref|YP_002494093.1| integrase family protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219956643|gb|ACL67027.1| integrase family protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 392 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 48/343 (13%), Positives = 99/343 (28%), Gaps = 25/343 (7%) Query: 21 IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKR------EYINSPRKKPTTLKWL 74 R + ++ A +G + + + TL Sbjct: 32 YRERVRVPVSGKTSAKRWADAREAEVISLARSGLDAEAIHAKLNGKGAANEARVPTLAEF 91 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK-HTPSS 132 ++ + A ++ + ES ++ G +IT +++ + H P + Sbjct: 92 EKQFIEHARANRQKASTVYAKESILRVHLVPVLGTKRLDEITEADVQALKVTLAEHRPKT 151 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-FKSFWSEGSQ 191 L ++ L + A R + P S E K + +T E+ + + Sbjct: 152 VNNVLATLSKLLRVAKRLGVIDAVPVESFELVKAPLAAVPFYTFEEYAVLVAAARRLDPR 211 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-----------ITVELPDG 240 A +GLR + + ++ I ++ V + D Sbjct: 212 ILAAVLLGGNAGLRAGEVVALELPDVRRANARITIERQAWRGVVDTPKGGKGRVVPMTDA 271 Query: 241 FMKLLAMTPIGKETFFINNDKQKM-NATQFSIWFKAKATKAGVNKS--AHGVRKFSATIS 297 LA + + D A W K+ AG+ + H +R + Sbjct: 272 LKAALAAVRHLRGARVLVQDDGSDLTAKVLRGWMKSAQRLAGLRPTGNFHILRHTFCSHL 331 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 A GA A + G + Y A+ + + R + Sbjct: 332 AMRGAPAKVIQELAGHTHLSTTMRYMHLAEGHK--EQAIRLLD 372 >gi|121602434|ref|YP_988421.1| site-specific tyrosine recombinase XerC [Bartonella bacilliformis KC583] gi|120614611|gb|ABM45212.1| tyrosine recombinase xerC [Bartonella bacilliformis KC583] Length = 322 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 42/284 (14%), Positives = 82/284 (28%), Gaps = 30/284 (10%) Query: 78 YRKSA-HWGSLAVNSRISFESYFDQI----IRKSGDFD----YRKITTKHIRSGVESRKH 128 + +S H +A + ++E Q + G + +RS + R+ Sbjct: 29 WLESLLHIHRMATRTVEAYERDTRQFLFFLCQHLGRKPTYHDLADLQVADLRSYMAYRRK 88 Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE-------D 178 + S + + SMR F + R+ V + V PK + T + Sbjct: 89 QMVSTRSLSRNMASMRSFFNYLSRENLVDVPAAKLVRTPKYAKSLPKTLTMKAALTIVKQ 148 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVE 236 Q + ++ L G+R S++ + + + K G V Sbjct: 149 GNQQEDEPWIAARNAAVLTLLYGCGMRISEALALTPKQFSDPNVTSLSIVGKGGKTRLVP 208 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-------FSIWFKAKATKAGVNKS--AH 287 L + + +N A + G+ K+ H Sbjct: 209 LIKTVYESVETYLKCCPYPLGDNQPMFRGARGGPLQPAIIQRAVQNLRASLGLPKTATPH 268 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +R AT G + G ++ + YT+ L Sbjct: 269 ALRHSFATHLLSRGGNLRIIQELLGHASLSTTQVYTEIDSDRLL 312 >gi|296532542|ref|ZP_06895255.1| integrase/recombinase XerD [Roseomonas cervicalis ATCC 49957] gi|296267143|gb|EFH13055.1| integrase/recombinase XerD [Roseomonas cervicalis ATCC 49957] Length = 294 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 38/273 (13%), Positives = 95/273 (34%), Gaps = 19/273 (6%) Query: 76 SEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR---KHT 129 + + A N+ ++ + + + + T+ +R + + Sbjct: 6 EAFLEMLAAERGAARNTLAAYRADLEDVAGFARRQGGTLAGADTELLRRYLAGLTDAGLS 65 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--- 186 P +A + L+++R +++ + A +P ++ P++ + + +E+++ Sbjct: 66 PRTAARRLSALRQFYRFLAAEGVRADDPTEILDSPRQPSRVPKALRREEVEALLDAATRL 125 Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVELPDGFM 242 G E L SGLR S+ + L + + + + + + Sbjct: 126 PGKRGPLATALLELLYCSGLRASELVSLPARALAQDSPLVLVRGKGNKERLVPISERARL 185 Query: 243 KLLAMTPIGKETFFINNDKQ---KMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATI 296 L++ K + ++ + + + K A AG++ S H +R AT Sbjct: 186 AALSLQDPKKPSKWLFPSRGAAGHLTRQSLLLLVKQAALAAGLDPAKLSPHVLRHSFATH 245 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + GA L G + + YT+ + Sbjct: 246 LLEGGADLRALQMLLGHADIATTQIYTRVLEER 278 >gi|240948880|ref|ZP_04753236.1| site-specific tyrosine recombinase XerC [Actinobacillus minor NM305] gi|240296695|gb|EER47306.1| site-specific tyrosine recombinase XerC [Actinobacillus minor NM305] Length = 300 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 37/278 (13%), Positives = 85/278 (30%), Gaps = 21/278 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRK 127 I Y ++ ++ +++ + + I S + Sbjct: 9 IQPYWDYLRAEKQVSPHTLSNYQRQLQAVCAMLKQQQISSWQEVDASVIRWILSQSHKQG 68 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185 S L ++R F + V+ E + NP L ++ PK + E + Q + Sbjct: 69 LGAKSIGVRLVALRQWFAYLVKNEQLQANPALGIKAPKVGRHLPKNVDAEQVAQLLNTEA 128 Query: 186 -WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMK 243 + E + SGLR S+ + + + ++ K V + ++ Sbjct: 129 TKPLEIRDLAMMELMYSSGLRLSELQGLDLDRMDLSTREVRLLGKGNKERIVPIGSKALE 188 Query: 244 LLAMTPIGKETFFINNDKQ-------KMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 + + F ++ +++ + + K G+ + H +R A Sbjct: 189 AIHRWLEVRMRFNPQDNAVFLNNRGGRLSHRSIQLIMEKWGRKQGLETHLHPHKLRHSFA 248 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 T + + G ++ + YT D L Sbjct: 249 THMLEGSGDLRAVQELLGHSSLATTQIYTH-LDFQHLA 285 >gi|299144068|ref|ZP_07037148.1| tyrosine recombinase XerC [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518553|gb|EFI42292.1| tyrosine recombinase XerC [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 326 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 41/298 (13%), Positives = 96/298 (32%), Gaps = 42/298 (14%) Query: 74 LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS----GDFD----------------YR 112 ++ ++ + + + + G D + Sbjct: 11 IVDDFLSYLSTTKGASQTTIKEYYYDIRIFLNFIFVRKGIIDEKSINEIDIDAINIDILK 70 Query: 113 KITTKHIRSGVES----RKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRK 167 I I + RK++ + + ++S+R F + + + + + NP ++ PK + Sbjct: 71 SINKMDIYAYNSYLDKIRKNSNKTKYRKISSIRTFFNYLSNKIDVIEFNPIEDIDMPKIE 130 Query: 168 TEGIRPWTKEDMQQFKSFWSEG-------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220 T E+ + SE ++ L G+R S+ ++ + N+ Sbjct: 131 KRLPIYLTLEESKLLLKTVSESKIKDKYKTRDYAIVVLFLNCGMRLSELSGLNIKDVNND 190 Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN-----NDKQKMNATQFSIWFKA 275 T K T+ L + + L + N +++ Q + Sbjct: 191 NTLRVTGKGNKERTIYLNNACVNALKNYLNYRNDTDNKALFLSNRNTRLSNRQIQRMVEK 250 Query: 276 KATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADRI 329 +G++ + H +R +A++ G A L G ++V + YT D+ Sbjct: 251 YINASGLDSEKYTVHKLRHTAASLMYQYGDADIRSLQEILGHESVTTTQIYTHINDKQ 308 >gi|117625125|ref|YP_854113.1| site-specific tyrosine recombinase XerD [Escherichia coli APEC O1] gi|115514249|gb|ABJ02324.1| site-specific tyrosine recombinase XerD [Escherichia coli APEC O1] Length = 264 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 37/221 (16%), Positives = 77/221 (34%), Gaps = 18/221 (8%) Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + +S+ + L+++R LF++ R+++ +P + PK + ++ +++ Sbjct: 32 GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAP 91 Query: 187 SEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 + + E L +GLR S+ + + ++ V L + Sbjct: 92 LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEA 151 Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 + L + F + Q+M F K A AG++ S H Sbjct: 152 VYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHV 211 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R AT + GA + G + + YT A Sbjct: 212 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 252 >gi|54303359|ref|YP_133352.1| hypothetical protein PBPRB1692 [Photobacterium profundum SS9] gi|46916789|emb|CAG23552.1| hypothetical protein PBPRB1692 [Photobacterium profundum SS9] Length = 295 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 41/283 (14%), Positives = 91/283 (32%), Gaps = 19/283 (6%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPS 131 L ++ + + ++ +I + D +TT ++ S H+ S Sbjct: 12 LYEQHLTNLTLQGKRPATIDAYSRAVRRISQFF-DRCPDAMTTADLKQYFASLIQTHSWS 70 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 + ++ ++ + +E+ ++ P + + T + + ++ + Sbjct: 71 TVKLDRNGLQFFYRHTLEKEWQWLDIVK----PPQSKKLPDIITAQQVAL-LISMTKQKR 125 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAMTP 249 ++ F L GLR + V + + I+ K G V +P + L Sbjct: 126 YQIFFLTLYTMGLRLGEGLSLTVHDIDQHTMQVHIRDGKGGKDRLVPVPQRTLNALRAHW 185 Query: 250 IGKETFF------INNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301 + N M+ K G+NK S H +R AT + G Sbjct: 186 LTHRHPRLIFPGKGCNTDNPMDRGGVQKAMKLVLKDCGINKPISPHSLRHGFATHLLEQG 245 Query: 302 ATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSRRISSVV 343 L G +++ YT+ + R R++ + Sbjct: 246 LDLRSLQILLGHASLNTTARYTRMTQIKQRDAALAINRLADAL 288 >gi|261368880|ref|ZP_05981763.1| site-specific recombinase, phage integrase family [Subdoligranulum variabile DSM 15176] gi|282568975|gb|EFB74510.1| site-specific recombinase, phage integrase family [Subdoligranulum variabile DSM 15176] Length = 391 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 50/335 (14%), Positives = 101/335 (30%), Gaps = 47/335 (14%) Query: 55 TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI 114 + + P TL + + LA ++ + +I+ G + + Sbjct: 57 EREVRHDPQPVNHAMTLAAYTEHWLRDIAPDKLAASTYSRDQQDIRRILPALGHYKLTDL 116 Query: 115 TTKHIRSGVESRKHTP----------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164 + IR+ E+ + P S ++ + AV + Y+ NP V +P Sbjct: 117 RKETIRAFYEAMRSEPKLTDGQPLSERSVEGLHNTLCSILSGAVDEGYLTHNPAWRVYKP 176 Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223 K + +E +Q+ + S + F+ +L +G+R ++C + + Sbjct: 177 KGVRKERPVADEETVQKMIAALETQSMKYEVYFKLVLATGMRRGEACGLRWSDIDWRHRT 236 Query: 224 IKTQKTGTI-----------------ITVELPDGFMKLLAMTPIGKETFF---------- 256 I Q+T V + KLL Sbjct: 237 IHVQRTVVKLSGQKIFTKEPKTASGNRRVYISKEMCKLLKAWKQECAWQMEQAEGQTLTE 296 Query: 257 -----INNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMA 309 M T F+ FK + G+ S H +R +A++ G + Sbjct: 297 EDYLFRQPSGDPMVPTTFTFRFKKILKENGLPQNLSVHSLRHTNASLLIAQGVDVRTVAG 356 Query: 310 TYGWKTVDQA-ETYTKGADR-IRLGIKNSRRISSV 342 G + Y D+ R + ++ + Sbjct: 357 LLGHSQPSTTLDIYAHAFDKTKREAQEKLGKVMRL 391 >gi|225027746|ref|ZP_03716938.1| hypothetical protein EUBHAL_02005 [Eubacterium hallii DSM 3353] gi|224954950|gb|EEG36159.1| hypothetical protein EUBHAL_02005 [Eubacterium hallii DSM 3353] Length = 415 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 47/408 (11%), Positives = 96/408 (23%), Gaps = 77/408 (18%) Query: 12 TKERTRHGKIIYYFRKG--HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 R R YYF+ +G R T A + + + Sbjct: 7 VSTRKRGKTWQYYFQLASVNGTRKWKTGSGYRTKAEAQATGTKALAEYNSTGIAFKVSEQ 66 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128 ++ + + LA + +++ I G + + + + +R+ + Sbjct: 67 SVADYFDYWMEHYVEQELAETTVNTYKKRIRLYIKPYIGSYKLKNVQGETLRNFLAELHR 126 Query: 129 TPSSAIQ---FLTSMRVLFKWAVRQ---------EYVAINPCLSVERPKRKTEGIRPWTK 176 T S + F +A Q + + + E + Sbjct: 127 TGMSRNTLTCIKGMLTSAFGYATVQAKFISVDPSYKLTLPNKRKDSEVGTRKENHIFVEE 186 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---- 232 + + EG LA Y GLR + + +I K Sbjct: 187 DMWNAIIERFPEGHPSHLALMLGYYCGLRLGEVYGLTWDCVDFENKTITINKQMQEPSGC 246 Query: 233 ---------------------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMN 265 T+E + + ++ Sbjct: 247 GKWLLYVPKYDSSRTVTVGNNVLALLKRTLEFQLTDKETCGEYYQENYMNYDEETHSLLS 306 Query: 266 ATQFSIWFKAKATKAGV--------------------------NKSAHGVRKFSATISAD 299 A + G+ H +R ATI + Sbjct: 307 LNDLRPVHFVNAKQGGLLAHPRNMQHTSRSIHGKAKNCTLISEEWDFHSLRHTHATILYE 366 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347 AG + G + + YT + L + + V++ D+ Sbjct: 367 AGVPMPLIQKRLGHINIQTTKRYTDHVTKKMLSM-----LDEVINGDN 409 >gi|297584028|ref|YP_003699808.1| tyrosine recombinase XerC [Bacillus selenitireducens MLS10] gi|297142485|gb|ADH99242.1| tyrosine recombinase XerC [Bacillus selenitireducens MLS10] Length = 303 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 41/283 (14%), Positives = 91/283 (32%), Gaps = 24/283 (8%) Query: 72 KWLISE-YRKSAHW-GSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIRSGVESR-- 126 ++ Y + + ++ ++ + + + IR + Sbjct: 9 DAVLERDYMRYLQIEKGASPSTISQYQKDICAFFQNMDHTKPVEDVNHQDIRRYLALLQK 68 Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + + + L S+R L+++ R+ + +NP L V PK + + +MQ Sbjct: 69 DGYARRTVARKLASLRSLWRFLEREGRIQLNPFLYVTTPKLDKKLPSFLYENEMQAIFDA 128 Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDG 240 G++ E L SG+R S+ ++ + ++ ++ K + + Sbjct: 129 IDTDSLLGARNLAIIELLYASGIRASECTGLKLKDIDLDLSTLLVMGKGKKERFLPVGSF 188 Query: 241 FMKLL----------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHG 288 ++ L + FIN + A + + H Sbjct: 189 AVEALSLYLDKRTAKFGPHAQSDPLFINYRGGALTDRGLRKILAKVIEDASLTSKLTPHV 248 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330 +R AT + GA + G + + YT DR+R Sbjct: 249 IRHTFATHMLNEGADLRTVQELLGHTDLKATQIYTHVTRDRLR 291 >gi|21910514|ref|NP_664782.1| putative integrase - phage associated [Streptococcus pyogenes MGAS315] gi|28876262|ref|NP_795429.1| putative integrase [Streptococcus pyogenes phage 315.2] gi|71910865|ref|YP_282415.1| integrase [Streptococcus pyogenes phage 5005.1] gi|21904713|gb|AAM79585.1| putative integrase - phage-associated [Streptococcus pyogenes phage 315.2] gi|71853647|gb|AAZ51670.1| phi5005.1 integrase [Streptococcus pyogenes phage 5005.1] Length = 362 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 50/345 (14%), Positives = 102/345 (29%), Gaps = 33/345 (9%) Query: 11 VTKERTRHGKIIY----YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 + + +G+ Y Y +G+R + T +A + ++ P+ Sbjct: 3 IKSYKKENGETAYKFLLYAGYVNGKRKYIRREGFKT----KQAARETLISLQAELDKPKS 58 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 T L ++ K + + I+ K I I+ E Sbjct: 59 -SMTFGALTDQWLKEYEKTVQCSTYLKTERNINKHILPKLDKVKIGDINPLLIQRLTEEW 117 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-----IRPWTKEDMQQ 181 + + L +R + AVR Y+ NP L + PK K + + Sbjct: 118 CNDLKYGGKILGLVRNILNLAVRYGYINNNPALPITPPKIKRKRKMNNNFYTLDQLKQFL 177 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--------------FSIKTQ 227 ++ + F L ++G+R + L N T+ Sbjct: 178 ELVEKTDNIEKIALFRLLAFTGIRKGELLALTWDDLNGNTLSINKAVTRTQVGLEIDVTK 237 Query: 228 KTGTIITVELPDGFMKLL---AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284 + + L D +++L T F + M + W + + Sbjct: 238 TKSSDRLISLDDETLEILLELHETFPTSTLMFQSESGGIMTPSLPRKWLLQIIKGTDLPQ 297 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGAD 327 + HG R A++ ++G + ++ G + YT Sbjct: 298 ITIHGFRHTHASLLFESGLSLKQVQHRLGHGDLQTTMNVYTHITQ 342 >gi|317481288|ref|ZP_07940359.1| phage integrase [Bacteroides sp. 4_1_36] gi|316902621|gb|EFV24504.1| phage integrase [Bacteroides sp. 4_1_36] Length = 366 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 30/269 (11%), Positives = 78/269 (28%), Gaps = 15/269 (5%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPS 131 Y + + ++ ++ +YF + + + I + +K + S Sbjct: 92 EGYLELLEQKRYSPSTIKTYRAYFSDFMEYHKGRNIDHLKVADINKYILYLVNEKKISVS 151 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 + +++ + + + + R K ++ ++ + + Sbjct: 152 QQNMRINAIKF---YYEQVKGGKRQYYGGITRAKEYKSLPEVLSRNEVARIL-ACLSNRK 207 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF-----MKLLA 246 R + +GLR S+ + + + ++ G L + Sbjct: 208 HRCMISLIYSAGLRRSELLNLTPKDIISERMLVRIMGKGRKCRYSLLSEKLLKELREYFK 267 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAH--GVRKFSATISADAGATA 304 K F ++ +A+ K A++AG+ H +R AT + G Sbjct: 268 EYRPQKWLFEGETPGEQYSASALVKILKEAASRAGIKHRVHVHMLRHSFATHLLEQGTDL 327 Query: 305 HELMATYGWKTVDQAETYTKGADRIRLGI 333 + G + Y + I Sbjct: 328 RTIQELLGHNDIKTTSIYLHVTSAHKSSI 356 >gi|257870759|ref|ZP_05650412.1| phage integrase [Enterococcus gallinarum EG2] gi|257804923|gb|EEV33745.1| phage integrase [Enterococcus gallinarum EG2] Length = 383 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 51/380 (13%), Positives = 115/380 (30%), Gaps = 51/380 (13%) Query: 13 KERTRHGKIIYYF--RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE--YINSPRKKP 68 + + ++ K + F A + S +K+ Sbjct: 6 QYKDKNNKRKWLFSGYVATDPITEKKIVTTRKGFDTKAEARLEFDKLKASILKGSKKKRT 65 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK 127 T + L ++ + S+ ++ + + + ++ K G +IT + V Sbjct: 66 ITFQELYDDWLEQHR-KSVKSSTVATNRRFIEGHVLPKFGKLKLDQITVSFCQKCVNEWH 124 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + + + V E + NP P++K E +P + + Sbjct: 125 DKYKQYHYIRRATAQVMNYGVSMELMESNPMKKTILPRKKEEEKKPNFYSKDELHEFMTF 184 Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-----------------IKT 226 + + F L +G+R S++ ++ L + Sbjct: 185 VKTLDNYKYYAFFRLLAITGMRKSEALGLYIKDLNIFNKTLTIGKTIAIDEYDQVVLQTP 244 Query: 227 QKTGTIITVELPDGFMKLLAMTP------------------IGKETFFINNDKQKMNATQ 268 + + T+ L D +++L + N+ Sbjct: 245 KTKNSYRTISLDDETIRILQKWFSIQKEDYFKLGFNTSKAKQLMFSNMSNDLYYPQVIND 304 Query: 269 FSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324 + W KA K G+ S HG R + ++ +AGAT +E+ G K V Y+ Sbjct: 305 WLDWIYDKAEKEGLTLKRISPHGFRHTACSLMFEAGATINEVQKRLGHKDVKTTMNIYSH 364 Query: 325 GADRIRLGIKNSRRISSVVD 344 + S+++++ + Sbjct: 365 VTPQQ--AENTSQKLANYLG 382 >gi|189460548|ref|ZP_03009333.1| hypothetical protein BACCOP_01189 [Bacteroides coprocola DSM 17136] gi|189432792|gb|EDV01777.1| hypothetical protein BACCOP_01189 [Bacteroides coprocola DSM 17136] Length = 388 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 55/385 (14%), Positives = 112/385 (29%), Gaps = 43/385 (11%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKG-HGRRIR-------LPYPHESTFIPAYMSALTGST 55 + P + + +T G I Y +G+R +P + + Sbjct: 3 KSKEPIRLRQRKTASGNITLYLDIYLNGKRSYEYLKLYLIPETNRKDKEKNRQTLQLAEA 62 Query: 56 PKREYINSPRKKPTTLKWL-------ISEYRKSAHWGSLAVNSRISFESY---FDQIIRK 105 K + + + + YR SR ++ ++ + R Sbjct: 63 IKAKRVVELQNGEYGFNAAYKLETNFLDYYRAMCEKRHGNPESRGNWGNWYSCLKHLERY 122 Query: 106 S-GDFDYRKITTKHIRSGVESRKH-----------------TPSSAIQFLTS---MRVLF 144 + ++ IT + I E P S ++ +R Sbjct: 123 CKPNTTFKDITPEWIIGFREHLDKNARCRDKRKIITTEEVTKPLSQNSKVSYFNKLRACI 182 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204 A + NP +E K+ T E+++ + + + AF F +GL Sbjct: 183 NQAFEDRIIPHNPLRGIEGFKQAETERSYLTLEEVKAMAAAQCKYPALKNAFMFSCLTGL 242 Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264 R SD + + +Q + + K + Sbjct: 243 RKSDIEKLRWREVQQQGDFTRIIFKQKKTGGQEYLDINKQAVQYMGVRREPDDRVFVGFK 302 Query: 265 NATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 + + A +AG+ + + H R A + D GA + + G K + + Y Sbjct: 303 YSAYMIAELRMWANRAGITKDITFHSGRHTFAVLMLDLGAEIYTVQKLLGHKELSTTQIY 362 Query: 323 TKGADRIRLGIKNSRRISSVVDSDD 347 K D+ + + I + +DD Sbjct: 363 AKILDKKK--QEAVAMIPDIFGADD 385 >gi|152993773|ref|YP_001359494.1| phage integrase family site specific recombinase [Sulfurovum sp. NBC37-1] gi|151425634|dbj|BAF73137.1| site-specific recombinase, phage integrase family [Sulfurovum sp. NBC37-1] Length = 280 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 43/270 (15%), Positives = 86/270 (31%), Gaps = 18/270 (6%) Query: 71 LKWLISEYRKSA-HWGSLAVNSRISFESYFD------QIIRKSGDFDYRKITTKHIRSGV 123 LK I + + S ++E + G IT Sbjct: 6 LKEYIETFLDYLLDVRGYSEVSVTTYEIALRQMSGVSHFYEEDG-ISVLDITPFR----F 60 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 K++ + ++ L+++R K+ Q + + ++ E+ + Sbjct: 61 NIVKNSKKTIVKKLSAVRSFVKYLEDQCNIPVKLIADESIKVPQSLPK---PIEEQYIEE 117 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 + +L L GLR S+ ++ ++ K + + L K Sbjct: 118 VLAKANVEEKLLISMLYGLGLRISELSGLKLEDIKGEWIQ-IHGKGNKVRELPLMKSLQK 176 Query: 244 LL--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAG 301 L+ M G + + MNA Q K G+ + H +R AT + G Sbjct: 177 LIGVYMDQNGPKRYLFEKGNAPMNAAQLRYKLTKLFKKEGLKVTPHQLRHSFATHLLNHG 236 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRL 331 A ++ G +T+ + YTK ++ Sbjct: 237 ARIADVSELLGHETMATTQVYTKLGSVKKM 266 >gi|21230129|ref|NP_636046.1| site-specific tyrosine recombinase XerD [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769880|ref|YP_244642.1| site-specific tyrosine recombinase XerD [Xanthomonas campestris pv. campestris str. 8004] gi|188993095|ref|YP_001905105.1| site-specific tyrosine recombinase XerD [Xanthomonas campestris pv. campestris str. B100] gi|34222916|sp|Q8PCQ9|XERD_XANCP RecName: Full=Tyrosine recombinase xerD gi|21111659|gb|AAM39970.1| integrase/recombinase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575212|gb|AAY50622.1| integrase/recombinase [Xanthomonas campestris pv. campestris str. 8004] gi|167734855|emb|CAP53066.1| tyrosine recombinase [Xanthomonas campestris pv. campestris] Length = 323 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 47/306 (15%), Positives = 96/306 (31%), Gaps = 32/306 (10%) Query: 53 GSTPKREYINSPRKKPTTLKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS----- 106 +R P + I + +A + S+ + + R Sbjct: 7 AERRQRAQQLPPLRAED--DQAIQRFLDRLWAEQGVARQTLDSYRRDLEGLARWRDGAGG 64 Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 G + ++ P S + L+++R + +R + +P ++ P+ Sbjct: 65 GLQGADRSALFDYLRWRTEARYAPRSNARLLSTLRGFYALCLRDGVRSDDPTALLDPPRL 124 Query: 167 KTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222 + T+ + + G+ + R E + +GLR S+ + Sbjct: 125 PRSLPKALTESQIDALLAAPEIGTPLGLRDRAMLELMYAAGLRVSELVTLPAVAINLRQG 184 Query: 223 SIKTQKT-GTIITVELPDGFMKLLAMT----------------PIGKETFFINNDKQKMN 265 ++ V L + L G+ FI+ ++ ++ Sbjct: 185 VLRVTGKGSKERLVPLGEESQHWLERYLETARPTLSERKAVPAVDGQVPLFIDAARRPLS 244 Query: 266 ATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 QF K A AG++ S HG+R AT + GA L G ++ + Y Sbjct: 245 RQQFWGLVKRYAAVAGIDPDTVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIY 304 Query: 323 TKGADR 328 T A + Sbjct: 305 TLVARQ 310 >gi|331271115|ref|YP_004385824.1| site specific tyrosine recombinase XerC [Clostridium botulinum BKT015925] gi|329127610|gb|AEB77552.1| site specific tyrosine recombinase XerC [Clostridium botulinum BKT015925] Length = 334 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 44/312 (14%), Positives = 102/312 (32%), Gaps = 46/312 (14%) Query: 62 NSPRKKPTTLKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRK-------------SG 107 R+K TL ++ + S ++ + +E R Sbjct: 8 EDIREKTDTLPQCMTSFFNYSETIKGNSIGTIKGYEVDLTMFFRFLKIYKNLVPNKLEFE 67 Query: 108 DFDYRKITTKHIRS------------GVESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVA 154 + I ++ + R ++ ++ + +++++ FK+ + + + Sbjct: 68 EIPINDIDYNFLKELKLTDLYAFMSFTEKYRNNSSNTRARKVSTLKAFFKYLYGKIKVLD 127 Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS--EGSQPRLAFEFLLYSGLRCSDSCRA 212 N +E+PK + T E+ ++ S + L GLR S+ C Sbjct: 128 YNIAEELEKPKLEKRNPIYLTLEESRKLLSVIDGKNKERDYCILNIFLNCGLRISELCSI 187 Query: 213 GVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF------------FINND 260 + ++ + + K TV L M + + + F+N + Sbjct: 188 QISKIKEDTLT-VIGKGNKERTVYLNKACMDSITDYLKVRNSCKARVPLEDKDILFLNKN 246 Query: 261 KQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISAD-AGATAHELMATYGWKTV 316 ++ K KAG++ + H +R +AT+ G +L G +++ Sbjct: 247 YGHISKRSVEKLVKKYVEKAGLDTTKYTPHKLRHTAATLMFKYGGVDIRKLQLILGHESI 306 Query: 317 DQAETYTKGADR 328 + YT + Sbjct: 307 STTQIYTHVDNE 318 >gi|197123191|ref|YP_002135142.1| tyrosine recombinase XerC [Anaeromyxobacter sp. K] gi|196173040|gb|ACG74013.1| tyrosine recombinase XerC [Anaeromyxobacter sp. K] Length = 343 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 45/286 (15%), Positives = 90/286 (31%), Gaps = 30/286 (10%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTPSS 132 Y S + ++R +++ Q D + +R + + + Sbjct: 19 FDAYLASE--KRASPHTRKAYQVDLAQYAAYLADQGQPLVPSSPALVRGFLARQAGAAGA 76 Query: 133 AI--QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 + L+++R L+++ VR+ NP +V PKR +E++ + Sbjct: 77 VSLGRKLSALRSLYRFLVREGLAPGNPARAVASPKRPKRLPEVLPEEEVAALVETPDAAT 136 Query: 191 ------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMK 243 + R E L SGLR S+ ++ L ++ K V + Sbjct: 137 EAPLALRDRAFLELLYGSGLRVSELTGLDLEDLDLAGGLVRVLGKRNKERIVPFGAPAAE 196 Query: 244 LLAM--------------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AH 287 L + F+N ++ + + +G+ + H Sbjct: 197 ALRRYLDGARPVLATGPDHARAGDAVFLNFRGGRLTSRSVARRLDGWVLASGLPRHVHPH 256 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 +R AT GA + G ++ + YT D RL Sbjct: 257 VLRHCFATHLLGNGADLRGIQELLGHASLSTTQRYTH-LDWKRLAA 301 >gi|23014819|ref|ZP_00054617.1| COG0582: Integrase [Magnetospirillum magnetotacticum MS-1] Length = 314 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 37/284 (13%), Positives = 80/284 (28%), Gaps = 30/284 (10%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRSGVESR 126 ++ S + ++ + + + + R+ + R Sbjct: 21 WRQWLGSE--KRASAHTLDGYGRDLAAFLTFLTEHLAAEPDLAALAALGPGDFRAFLARR 78 Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 SS + ++++R FK+ R V +V+ P+ +P ++ + Sbjct: 79 TQDGLGRSSLARLMSTLRGFFKFLDRHGLVHNPAIKAVKSPRPPKSIPKPLAPDEALEAL 138 Query: 184 -------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 ++ F L +GLR ++ + L + T K V Sbjct: 139 SSAGELHDEPWLAARDVALFSLLYGAGLRLGEALSLLRRDLPKGDTMVITGKGNKQRVVP 198 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQ-------KMNATQFSIWFKAKATKAGVN--KSAH 287 + +A + D +N + G+ + H Sbjct: 199 VLPVVRDAIADYLKRLPFPSESTDPVFLGARGGPLNPGVVQRQMRRLRQVMGLPDTATPH 258 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +R AT G + G ++ + YT D RL Sbjct: 259 ALRHSFATHLLAGGGDLRTIQELLGHSSLSTTQRYT-EVDAARL 301 >gi|218441747|ref|YP_002380076.1| integrase [Cyanothece sp. PCC 7424] gi|218174475|gb|ACK73208.1| integrase family protein [Cyanothece sp. PCC 7424] Length = 294 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 47/263 (17%), Positives = 101/263 (38%), Gaps = 16/263 (6%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK----HIRSGVESRKH 128 L+S + + S+ ++ S+ Q + G +++ + + S S+++ Sbjct: 25 QLVSIWLA-----GKSKTSQNTYASHIKQFLEYVG-KPLKELKLEDMQLWVSSLENSQRY 78 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-RPWTKEDMQQFKSFWS 187 ++ + +++ L + + Y+ N +V+ P K E R ++ ++ + Sbjct: 79 KTATLKLKINTVKSLLTFGQKVGYLQFNIGSAVKPPNPKNELSSRMLSETEVTTLIEKAN 138 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS---IKTQKTGTIITVELPDGFMKL 244 + + R+ + + G+R S+ + L N I K G V +P+ Sbjct: 139 QNQRDRIILKLMYVCGMRVSEVVGLNWRDLVPNNNGGLAIVLGKGGKTRVVLIPEKLWLD 198 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302 + P + FI+ K +++ K A +AG+N S H +R AT S + G Sbjct: 199 IQQLPKTDDAVFISRKKNRISRKTVHYMIKQYAKQAGINGNVSPHWLRHSHATHSIERGC 258 Query: 303 TAHELMATYGWKTVDQAETYTKG 325 H L + G + Y Sbjct: 259 NLHLLQQSLGHSNLSITSRYLHA 281 >gi|260642793|ref|ZP_05417338.2| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM 17565] gi|260620552|gb|EEX43423.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM 17565] Length = 368 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 32/261 (12%), Positives = 80/261 (30%), Gaps = 15/261 (5%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI----RSGVESRKHTPSSA 133 Y + ++++ +++ YF + D +T + I V+ + + + Sbjct: 96 YLELLEQKRYSLSTIKAYKIYFSDFMEYHKGQDLDLLTVEDINSYMLHMVKEKHISATQQ 155 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193 + +++ ++ + + + ++E+M+ + R Sbjct: 156 NMRINAIKFYYEKVRKGKRQYYGGIARAKE---YKALPEVLSREEMKS-IFAQLSNRKHR 211 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----ELPDGFMKLLAMT 248 + +GLR S+ Q + + I+ G +L + Sbjct: 212 CMISLIYSAGLRRSELLNLTPQDIISERMLIRIAGKGKKCRYSLLSEKLLNELRDYYREY 271 Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHE 306 K F ++ + + K A KAG+ H +R AT + G Sbjct: 272 RPQKWLFEGEQAGEQYSPSALVKILKEAARKAGIKHRVHLHMLRHTFATHLLEQGTDLRT 331 Query: 307 LMATYGWKTVDQAETYTKGAD 327 + G + Y ++ Sbjct: 332 IQELMGHTDIKTTAIYLHVSN 352 >gi|226952079|ref|ZP_03822543.1| site-specific tyrosine recombinase [Acinetobacter sp. ATCC 27244] gi|226837171|gb|EEH69554.1| site-specific tyrosine recombinase [Acinetobacter sp. ATCC 27244] Length = 310 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 44/281 (15%), Positives = 90/281 (32%), Gaps = 27/281 (9%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESR--- 126 + L+S + K + + ++ +++ + + +R + SR Sbjct: 9 EKLLSMWLKERVIQNQSAHTISAYQRDLTDFFKFCEYKQLQLEDVEASDLREYLASRVEQ 68 Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + + SS + LTS+R KWA + Y+ NP + ++ E + Q Sbjct: 69 DQLSSSSLQRHLTSIRQFMKWAAQGRYLQHNPSADFKLKRQPRPLPGMIDIETVNQILDQ 128 Query: 186 --------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236 + + E L SGLR ++ ++ + N ++ V Sbjct: 129 TAPEKLIDQQLWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLLRITGKGNKTRIVP 188 Query: 237 LPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--NK 284 + L + FI+ + + Q K +A +AGV + Sbjct: 189 FGLKAKQSLIEWLKIYRIWQGGFTADSAVFISQQGRALMPRQIENRVKLQAQRAGVNVDL 248 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 H +R A+ A + G + + YT Sbjct: 249 HPHLLRHCFASHMLSASGDLRSVQEMLGHSNLSTTQIYTHV 289 >gi|187736389|ref|YP_001878501.1| integrase family protein [Akkermansia muciniphila ATCC BAA-835] gi|187426441|gb|ACD05720.1| integrase family protein [Akkermansia muciniphila ATCC BAA-835] Length = 295 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 38/280 (13%), Positives = 88/280 (31%), Gaps = 26/280 (9%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI------RSGVESRK 127 + + + L+ ++S ++ R + D + I ++ R Sbjct: 5 LERFIRFLAAEKGLSTAYQLSVRQTLEEFARFL-EMDNTGLAQTGIDTLSAFLRHLQDRG 63 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---- 183 SS + +R+ F+W + +P + +E P++ ++ + Sbjct: 64 MARSSMRVEMVHLRIFFRWLAGTGILEKDPSVFLEMPRQGLSLPHVLDQKTVSNLLESID 123 Query: 184 -SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241 G + R E + G+R S+ ++ + ++ K V + Sbjct: 124 IQDIPLGCRDRALLEMIYACGMRVSEIINCKLESFDKDEAFVRVLGKGNKTRLVPVGRSA 183 Query: 242 MKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289 + L M K F+ + + + + +A AG+ + H + Sbjct: 184 LDALQMYLEKGRPKLVRTGTKSHIFLTVRGRPLTRERIRQILRERARAAGLEQHVFPHIL 243 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + GA + G + + YT + Sbjct: 244 RHSFATHLLENGADLRIIQEMLGHADISTTQIYTHLEQQR 283 >gi|299538026|ref|ZP_07051312.1| hypothetical protein BFZC1_18510 [Lysinibacillus fusiformis ZC1] gi|298726608|gb|EFI67197.1| hypothetical protein BFZC1_18510 [Lysinibacillus fusiformis ZC1] Length = 293 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 35/267 (13%), Positives = 89/267 (33%), Gaps = 11/267 (4%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTP 130 ++ E+ S + +V + ++ Y ++ + +++ I + + Sbjct: 18 EVVGEFLLSLKLANCSVETVRTYRWYLEKFFENREESFLT-LSSDTIHQWFQKYDGVKSD 76 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 ++ L + + + V +E + +P + P+ + K ++ + + E + Sbjct: 77 ATVKLRLCILSSFYNFCVIEELLEKSPIKTRWLPRLPQPIPQYLGKSELAKTRKQTEEST 136 Query: 191 -QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249 + R+ EF+L SG R S+ + + + G I +L Sbjct: 137 LRNRVLIEFMLTSGCRVSEIVGLNQSDVDLENRTARVIGKGKKIREVHFSEKCAILMERY 196 Query: 250 -----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGA 302 E F+ + +++ +A ++K H +R AT GA Sbjct: 197 LTDEVKKCEALFVTANGKRLGVRGVQYIVHDIGEEAQLDKRLFPHRLRHTFATELLSKGA 256 Query: 303 TAHELMATYGWKTVDQAETYTKGADRI 329 + G + + Y + + Sbjct: 257 ELSFIADELGHTDIRTTQIYARLPKQE 283 >gi|251780787|ref|ZP_04823707.1| phage integrase family protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243085102|gb|EES50992.1| phage integrase family protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 384 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 52/365 (14%), Positives = 112/365 (30%), Gaps = 56/365 (15%) Query: 17 RHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 + G Y Y+ +G + +L T+ A + S +LK Sbjct: 7 KKGNNYYIRYYETINGVKKQLERKGGYTYAEAEKKLNEIIYKQNNGYVSS---NMSLKKY 63 Query: 75 ISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHT---- 129 ++ + + + + + + II G+ + HI + ++T Sbjct: 64 LNMWLEEYIKTNYSQRTYEIYLDTVEKHIIPIIGNIKLSDLKVVHIEKYLNHLRNTKTIN 123 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 ++A ++ A++ + + NPC VE PK+ T E+ ++ Sbjct: 124 GTTANLHFRNLNTALNRAIKLQLLTNNPCTYVEPPKKNKFKGNYLTVEEFKKIYDSMIVN 183 Query: 190 SQPRLAFEFLLY----SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 + ++F+ LL +G R + C + + T + I T KL Sbjct: 184 NYLNMSFKTLLNLAVETGCRRGEMCGLEWDKDIDLHNNTITFRRALIRTNSSGWIMGKLK 243 Query: 246 AMTPIGKETF---------------------------------------FINNDKQKMNA 266 + I + + M Sbjct: 244 TQSSYRCLPISDFLSKQLKELKKEQMKNKLLFGEEYCKNIFNGIEYNLVCIQRNGKYMCP 303 Query: 267 TQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYT 323 T + +A + +NK H +R SAT+ ++G + G +++ Y+ Sbjct: 304 TDITDRLRALLKRNEINKKIRWHDLRHTSATLLLESGVDMKTVQERLGHASMNTTSNIYS 363 Query: 324 KGADR 328 ++ Sbjct: 364 HVTEK 368 >gi|191168738|ref|ZP_03030516.1| Int [Escherichia coli B7A] gi|331658405|ref|ZP_08359367.1| integrase [Escherichia coli TA206] gi|190901228|gb|EDV60999.1| Int [Escherichia coli B7A] gi|323172004|gb|EFZ57648.1| integrase [Escherichia coli LT-68] gi|331056653|gb|EGI28662.1| integrase [Escherichia coli TA206] Length = 334 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 45/314 (14%), Positives = 94/314 (29%), Gaps = 10/314 (3%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 ++ G+ + R + R+ + + + ++ + TL Sbjct: 4 KKLEDGRYLLDIRPNGRKGKRVRKVFDKKSVAVATERYIMANAEKREYIQGYRDRRTLND 63 Query: 74 LIS-EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132 L+ + A R + +++ D K+ RS + PSS Sbjct: 64 LLELWWMYHGQHRRKAEEDRKQLRNIINELGADMQAVDLDKLKIIAWRSQKIADGLKPSS 123 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 A +++ + +F + + + + + EG Sbjct: 124 ANRYMNRLSGMFTVLKKIGLWDAEHPVRGISILYVSPREMAFLSQKEVALLLDTLEGDYW 183 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252 R+A L +G R S++C+ + + +N + K G TV + + + G Sbjct: 184 RVALLC-LSTGARWSEACKLRGEQIVHNRVTFLETKNGRKRTVPISQAVCEAIKTRETGG 242 Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYG 312 +F + K ++AH +R A+ G L G Sbjct: 243 LFEVK--------YREFCLALKRVKPDLPKGQAAHVLRHTFASHFVMNGGNIIALQKILG 294 Query: 313 WKTVDQAETYTKGA 326 T+ Q Y A Sbjct: 295 HATIQQTMAYAHFA 308 >gi|307692278|ref|ZP_07634515.1| Phage integrase [Ruminococcaceae bacterium D16] Length = 527 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 57/376 (15%), Positives = 120/376 (31%), Gaps = 45/376 (11%) Query: 1 MTPSLRLPPFVTKERTRH---GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPK 57 M + + R G+++ + + + A + L G Sbjct: 1 MAGKRKKGEGTVRLRKDGRWEGRVVVSYDASGNPKTKNVLAKTKKECVAKLEKLKG--EC 58 Query: 58 REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITT 116 ++ + + ++E+ ++ L +++ +E + +I G+ ++T Sbjct: 59 GSVRSTQVRPDMLFRDWLNEWYQNDAKPRLRPTTQLQYEGFLQHHLIPGLGEIPLNQLTQ 118 Query: 117 KHIRSGVESRK----------HTPSSAIQFLTSMRVLFKWA----VRQEYVAINPCLSVE 162 + K + P A + + S + + A V ++ + NP + + Sbjct: 119 GEFQQFFRHMKENGRKVQVERYGPGMADRSVRSCHAVCQMALDKAVEEKLIHANPAVGCK 178 Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222 P K + ++ T E++Q+F L F L +G+R + L Sbjct: 179 LPPLKGKEMKILTLEEIQRFLIRAKAEGMYEL-FLLELTTGMRRGELLALRWDDLDFVTG 237 Query: 223 SIKTQKTGTI----------------ITVELPDGFMKLLAMT----PIGKETFFINNDKQ 262 + K T+ LP ++LLA +Q Sbjct: 238 KLHIDKQVYPVGGKLVISEPKTKAANRTIILPPAMVELLAEYKKGVFSDLMFPSRTKPEQ 297 Query: 263 KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-E 320 ++ + +AG NK H +R AT+S + G L G + + Sbjct: 298 PIDPCYVRKRLQVILKRAGCNKVRFHDLRHTFATMSLENGMDIKTLSTIIGHVSAETTLN 357 Query: 321 TYTKGAD--RIRLGIK 334 TYT D R + + Sbjct: 358 TYTHITDDMRRKAALN 373 >gi|299822639|ref|ZP_07054525.1| tyrosine recombinase XerC [Listeria grayi DSM 20601] gi|299816168|gb|EFI83406.1| tyrosine recombinase XerC [Listeria grayi DSM 20601] Length = 304 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 38/281 (13%), Positives = 87/281 (30%), Gaps = 28/281 (9%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGD------FDYRKITTKHIRSGVESRKHTPS 131 Y + + + + +++ + D R + + + + ++++ S Sbjct: 17 YLE--KERNYSAYTVAAYKQDIHDFQTFLKEEIIESLTDVRYLEVRVYLTRLREKEYSRS 74 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-- 189 + + L+S+R + + +R + +A NP V K + + E+M+ + + Sbjct: 75 TVSRKLSSLRSFYTFLLRDQQIAENPFSYVSHSKNHLRLPKFFYSEEMEALFTVVYQDDK 134 Query: 190 ---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDG----- 240 + R E L +G+R S+ + + SI K V Sbjct: 135 LLTLRNRALLEILYGTGIRVSECADIRLADIDATYQSILIRGKGNKERYVPFGAYAEDAV 194 Query: 241 -------FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRK 291 L+ + F+N+ + A + H +R Sbjct: 195 QLYLEASRKALMEKYHKEHDYLFVNHYGDPLTPRGIRYCLSKTIESAAMTRKIHPHMLRH 254 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 AT + GA + G ++ + YT Sbjct: 255 TFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEHLKA 295 >gi|328542142|ref|YP_004302251.1| Integrase family protein [Polymorphum gilvum SL003B-26A1] gi|326411892|gb|ADZ68955.1| Integrase family protein [Polymorphum gilvum SL003B-26A1] Length = 403 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 54/372 (14%), Positives = 107/372 (28%), Gaps = 44/372 (11%) Query: 12 TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS--PRKKPT 69 + R+ +G Y R + + T + +R + + P K Sbjct: 6 KRVRSDNGDSYYRVRVRVRGLPEKQKTFKRLTDAKLWAQQTEAAIRRGEVQNVVPAAKGK 65 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK-- 127 TL +I Y+K A +++ + +Y + G + IT + I + +E Sbjct: 66 TLADVIERYKKRVLPHR-AESTQRAAVTYLAYWEKALGTYGLTYITAELIEAELEKLAAA 124 Query: 128 ----------------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 + + + ++ +L K A + NP V + Sbjct: 125 GDTRRKSDEGEPAGKPKSRKTIKHYRDTLALLMKHAKAWGWATQNPMEGVTPITNIRDER 184 Query: 172 -RPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKT 226 R + + +L F L +G R S+ + + + Sbjct: 185 TRFLSDAERAVLLDACKASDNDQLFNIVVFALSTGARKSEILGLTLADVDLQRGSAIFRD 244 Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT-----------QFSIWFKA 275 K G L LL E + ++ Sbjct: 245 TKNGDTRAAPLARHLRDLLTGQVAKAEALYAALPHAPKTRWLFPRADGVLPIDIRTAWEN 304 Query: 276 KATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334 KAG+ + H +R +A+ A GA+ E+ G +T+ Y L Sbjct: 305 ARDKAGLVDFRFHDLRHSTASYLAMKGASLVEIAEVLGHRTLQMVRRYAH------LSES 358 Query: 335 NSRRISSVVDSD 346 + + + + D Sbjct: 359 HVKGLVESLGED 370 >gi|285019335|ref|YP_003377046.1| tyrosine recombinase [Xanthomonas albilineans GPE PC73] gi|283474553|emb|CBA17054.1| probable tyrosine recombinase protein [Xanthomonas albilineans] Length = 296 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 42/276 (15%), Positives = 89/276 (32%), Gaps = 19/276 (6%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGVE---SRK 127 +SE+ ++ ++ ++ + + D + + +R + R Sbjct: 8 VSEFLAYLRVERRMSAHTLDAYRRDLAALTTWAADNLLGEPAALGAEQLRQFIAAEHRRG 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 +P S + L++ R + W ++ ++ +P ++ PK + + ++ + Sbjct: 68 LSPKSLQRRLSACRSFYVWLLKHGHIEASPAAALRAPKAPRKLPQVLDADEAVRLVEVPT 127 Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMK 243 G + R E SGLR S+ C + L K G V + K Sbjct: 128 DVPLGLRDRALLELFYSSGLRLSELCALRWRDLDAASGLVSVHGKGGKQRLVPIGSHARK 187 Query: 244 LLAMTPIGKE-----TFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296 L+ F + A I K A + G+ + H +R A+ Sbjct: 188 ALSEWREEHCADAAAPVFPGRGGVPIGARAVQIRIKQLAARQGLFKHVHPHMLRHSFASH 247 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 ++ + G + + YT D L Sbjct: 248 ILESSGDLRGVQELLGHADIATTQIYTH-LDFQHLA 282 >gi|300024727|ref|YP_003757338.1| integrase family protein [Hyphomicrobium denitrificans ATCC 51888] gi|299526548|gb|ADJ25017.1| integrase family protein [Hyphomicrobium denitrificans ATCC 51888] Length = 327 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 49/290 (16%), Positives = 92/290 (31%), Gaps = 30/290 (10%) Query: 71 LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRS 121 LK + ++ + +R ++ Q + D ++ TK R+ Sbjct: 25 LKRAVEDWLAHLINERGQSAATREAYARDVTQFLAFLKTHLGRAPCLGDLSRVDTKVFRA 84 Query: 122 GVESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + R+ + S + L+S+R F+W R+ + L V PK +P T + Sbjct: 85 FLAHRRKSDVVSRSLARSLSSLRTFFRWLEREGRLQNRAVLQVALPKIPHSVPKPLTVDG 144 Query: 179 ------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTG 230 + ++ L +GLR S++ L T K G Sbjct: 145 AAELVATKNDDRAEWINARDTAVLLLLYGAGLRISEALSLTPNSAPLNGRDVMHITGKGG 204 Query: 231 TIITVELPDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKAGVN 283 V + +A F+ ++ + + G+ Sbjct: 205 KDRLVPALPIISEAIAKYMRLCPFPLSGDGPLFLGARGGPLSPRLIQLAMARMRRELGLP 264 Query: 284 --KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 + H +R AT AGA ++ G ++ + YT DR RL Sbjct: 265 ETATPHALRHSFATHLLSAGADLRQIQELLGHASLSTTQVYT-EVDRDRL 313 >gi|170730010|ref|YP_001775443.1| site-specific tyrosine recombinase XerC [Xylella fastidiosa M12] gi|167964803|gb|ACA11813.1| site-specific recombinase [Xylella fastidiosa M12] Length = 277 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 40/254 (15%), Positives = 84/254 (33%), Gaps = 17/254 (6%) Query: 88 AVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSG---VESRKHTPSSAIQFLTSMR 141 + ++ ++ +I G + +++ R +P S + L++ R Sbjct: 2 SAHTLDAYRRDIGALIAWGGQQVVGDVVVLDRAQLQAFVSAEHRRGLSPKSLQRRLSACR 61 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED---MQQFKSFWSEGSQPRLAFEF 198 + W V+ ++A+NP + PK + R ++ Q + G + R E Sbjct: 62 GFYAWLVKSGHIAVNPAAGLRAPKALRKLPRILDADEAVSFVQIPTDTPLGLRDRALLEL 121 Query: 199 LLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLAMTPIG-----K 252 SGLR S+ C L + K V + + L + Sbjct: 122 FYSSGLRLSELCGLRWDGLDLDAGLVSVLGKGSRQRVVPVGSYALSALREWCASSGGGAQ 181 Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMAT 310 + F ++A + K A + G+ + H +R A+ ++ + Sbjct: 182 QPVFPGRYGGPISARAVQVRIKQLAQRQGMAKHVHPHMLRHSFASHLLESSGDLRGVQEL 241 Query: 311 YGWKTVDQAETYTK 324 G + + YT Sbjct: 242 LGHADITTTQIYTH 255 >gi|28493419|ref|NP_787580.1| integrase/recombinase [Tropheryma whipplei str. Twist] gi|28476460|gb|AAO44549.1| integrase/recombinase [Tropheryma whipplei str. Twist] Length = 316 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 38/277 (13%), Positives = 91/277 (32%), Gaps = 24/277 (8%) Query: 74 LISEYRKSAH-WGSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVESR-- 126 LI E+ + ++ ++ + II + + + I+ Sbjct: 25 LIREFIIYLENVRGYSSHTCRAYYRDLMCFGEYIITHDSRENVKSLRDVSIQDLRSWLYS 84 Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + S + ++S++ F+WA ++ A N ++ PK ++ +++ + Q Sbjct: 85 QSHKSARSIRRAVSSLKSFFRWAYDRKITAQNTAAALRAPKSTSQLPSVLSEKRIAQILG 144 Query: 185 FWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELP 238 +S + FE L S +R S+ + + +++ +++ V Sbjct: 145 NFSHTVPVIQLRNTAIFELLYASAIRVSELVSLDLDSIDHDLCTVRVDGKNGKQRVVLFG 204 Query: 239 DGFMKLLAMTPIGKETFFINN---------DKQKMNATQFSIWFKAKATKAGVNKSAHGV 289 L + + T + +++N + H + Sbjct: 205 KPASHALDLYLNMRHTLLSDRSSKALFLGSRGRRINPRVVYRLVSELLEMPKGPRGPHVL 264 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 R +AT D GA L G ++ + YT + Sbjct: 265 RHSAATHMLDNGADLRSLQEILGHSSLSTTQIYTHVS 301 >gi|71274748|ref|ZP_00651036.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Dixon] gi|71901196|ref|ZP_00683299.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Ann-1] gi|71164480|gb|EAO14194.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Dixon] gi|71729040|gb|EAO31168.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Ann-1] Length = 277 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 40/254 (15%), Positives = 85/254 (33%), Gaps = 17/254 (6%) Query: 88 AVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSG---VESRKHTPSSAIQFLTSMR 141 + ++ ++ +I G + + +++ R +P S + L++ R Sbjct: 2 SAHTLDAYRRDIGALIAWGGQQVVGEVVVLDRAQLQAFVSAEHRRGLSPKSLQRRLSACR 61 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED---MQQFKSFWSEGSQPRLAFEF 198 + W V+ ++A+NP + PK + R ++ Q + G + R E Sbjct: 62 GFYAWLVKSGHIAVNPAAGLRAPKALRKLPRILDADEAVSFVQIPTDTPLGLRDRALLEL 121 Query: 199 LLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLAMTPIG-----K 252 SGLR S+ C L + K V + + L + Sbjct: 122 FYSSGLRLSELCGLRWDGLDLDAGLVSVLGKGSRQRVVPVGSYALSALREWCASSGGGAQ 181 Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMAT 310 + F ++A + K A + G+ + H +R A+ ++ + Sbjct: 182 QPVFPGRYGGPISARAVQVRIKQLAQRQGMAKHVHPHMLRHSFASHLLESSGDLRGVQEL 241 Query: 311 YGWKTVDQAETYTK 324 G + + YT Sbjct: 242 LGHADITTTQIYTH 255 >gi|330818646|ref|YP_004362351.1| Site-specific recombinase XerC [Burkholderia gladioli BSR3] gi|327371039|gb|AEA62395.1| Site-specific recombinase XerC [Burkholderia gladioli BSR3] Length = 306 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 42/288 (14%), Positives = 88/288 (30%), Gaps = 31/288 (10%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTP 130 I+ Y L+ ++ + D ++ + + +R + + + Sbjct: 6 IAAYLSYLQHVRQLSEHTLRGYAHELDALLALADGRPLASLGAADMRGAVARAHAGGLSA 65 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFW 186 S L++ R ++W + + NP +V PKR + + +D M+ Sbjct: 66 RSIAHRLSAWRAFYRWYALRVEMPANPVATVRAPKRAKTLPKALSVDDANTLMESPFPDT 125 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG------------TIIT 234 EG + E SGLR ++ V + Q + + + Sbjct: 126 PEGLRDHAILELFYSSGLRLAELVGLDVHYTQADGYRSASWLDREQAEVSVLGKGGKERK 185 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQ--------KMNATQFSIWFKAKATKAGVN--K 284 V + ++ L + + + +M+ K A AG+ Sbjct: 186 VPVGRKALEALDAWLAVRAGWVRTDPHPLFLSVRGKRMSPGVVRERVKRAALVAGIPANV 245 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R AT + + G ++ + YT D L Sbjct: 246 HPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYT-SLDFQHLA 292 >gi|239833042|ref|ZP_04681371.1| tyrosine recombinase XerC [Ochrobactrum intermedium LMG 3301] gi|239825309|gb|EEQ96877.1| tyrosine recombinase XerC [Ochrobactrum intermedium LMG 3301] Length = 315 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 41/293 (13%), Positives = 84/293 (28%), Gaps = 35/293 (11%) Query: 71 LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS-------------GDFDYRKITT 116 L E+ K+ L+ N+ ++E Q + G+ + + Sbjct: 15 LAAAREEWLKTLKDARRLSENTLDAYERDTRQFLNFLTGHLGEPPSLKDVGNLRIADLRS 74 Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + + + + L +R L + ++ ++ P++ +P T Sbjct: 75 --FLASRRNEGVGARTLGRGLAGVRSLLRHLEKRGLANAAGASAMRAPRQPKSLPKPLTA 132 Query: 177 EDMQQFKSF-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQ 227 ED ++ + ++ L GLR S++ L ++ T Sbjct: 133 EDARRVVAADGQLAEEPWIAARNAAVLTLLYGCGLRISEALGLTGDALSDSTALSITITG 192 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-------FSIWFKAKATKA 280 K V L + +A + A + Sbjct: 193 KGNKARLVPLLPVVHRAVAQYRTLCPFDLSADKPLFRGAKGGILHAAIIQREMQKLRAGL 252 Query: 281 GVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 G+ + H +R AT G + G ++ + YT G D RL Sbjct: 253 GLPDSATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYT-GVDTERL 304 >gi|168205361|ref|ZP_02631366.1| tyrosine recombinase [Clostridium perfringens E str. JGS1987] gi|170663182|gb|EDT15865.1| tyrosine recombinase [Clostridium perfringens E str. JGS1987] Length = 431 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 49/328 (14%), Positives = 109/328 (33%), Gaps = 46/328 (14%) Query: 43 FIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI 102 Y + I++ P + ++ Y K+ + N+ ++S + + Sbjct: 94 LKKEYDLDKYNEKNLKFEISTESNTPIRVNEFLN-YLKNI--KGRSPNTVKGYKSNLNLL 150 Query: 103 IRKS----GDFDYRKITTKHIRSGVES--------------------RKHTPSSAIQFLT 138 + + I IR+ ++ RK+ S + + Sbjct: 151 FKYLVSLKENTPGTDIENVCIRNVDDTFIKNITLMDLYNFLSYVDEVRKNGSYSRARLVA 210 Query: 139 SMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193 +++ F + + + + N L +E PK + T + + + + + Sbjct: 211 AIKSFFLFLNSKLKIIDENIALELEFPKIEKRLPVYLTLDQAKAVLNSMDKTKRYYYRDY 270 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT----- 248 F L G+R S+ C + ++ ++ +I + T+ L +K + Sbjct: 271 CIFTLFLNCGMRLSELCGIKISDIRGDLLTIIGKGN-KQRTIYLNSECLKSIHDYLNVRG 329 Query: 249 ----PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAG 301 P + F++ ++++ K AG + H +R +ATI G Sbjct: 330 RGNTPEEDKYLFLSRIDKRISNRGVEKLVKKHIENAGFTDKKYTPHKLRHSAATILYKYG 389 Query: 302 -ATAHELMATYGWKTVDQAETYTKGADR 328 A L A G +++ E YT D Sbjct: 390 NADIRSLQAILGHESIATTELYTHVDDE 417 >gi|23502766|ref|NP_698893.1| site-specific tyrosine recombinase XerC [Brucella suis 1330] gi|62290770|ref|YP_222563.1| site-specific tyrosine recombinase XerC [Brucella abortus bv. 1 str. 9-941] gi|82700682|ref|YP_415256.1| site-specific tyrosine recombinase XerC [Brucella melitensis biovar Abortus 2308] gi|161619834|ref|YP_001593721.1| site-specific tyrosine recombinase XerC [Brucella canis ATCC 23365] gi|189024985|ref|YP_001935753.1| Phage integrase [Brucella abortus S19] gi|225853354|ref|YP_002733587.1| site-specific tyrosine recombinase XerC [Brucella melitensis ATCC 23457] gi|254690060|ref|ZP_05153314.1| site-specific tyrosine recombinase XerC [Brucella abortus bv. 6 str. 870] gi|254694548|ref|ZP_05156376.1| site-specific tyrosine recombinase XerC [Brucella abortus bv. 3 str. Tulya] gi|254696173|ref|ZP_05158001.1| site-specific tyrosine recombinase XerC [Brucella abortus bv. 2 str. 86/8/59] gi|254700560|ref|ZP_05162388.1| site-specific tyrosine recombinase XerC [Brucella suis bv. 5 str. 513] gi|254704930|ref|ZP_05166758.1| site-specific tyrosine recombinase XerC [Brucella suis bv. 3 str. 686] gi|254707556|ref|ZP_05169384.1| site-specific tyrosine recombinase XerC [Brucella pinnipedialis M163/99/10] gi|254708907|ref|ZP_05170718.1| site-specific tyrosine recombinase XerC [Brucella pinnipedialis B2/94] gi|254715980|ref|ZP_05177791.1| site-specific tyrosine recombinase XerC [Brucella ceti M13/05/1] gi|254731091|ref|ZP_05189669.1| site-specific tyrosine recombinase XerC [Brucella abortus bv. 4 str. 292] gi|256030433|ref|ZP_05444047.1| site-specific tyrosine recombinase XerC [Brucella pinnipedialis M292/94/1] gi|256112250|ref|ZP_05453171.1| site-specific tyrosine recombinase XerC [Brucella melitensis bv. 3 str. Ether] gi|256158417|ref|ZP_05456315.1| site-specific tyrosine recombinase XerC [Brucella ceti M490/95/1] gi|256253837|ref|ZP_05459373.1| site-specific tyrosine recombinase XerC [Brucella ceti B1/94] gi|256258313|ref|ZP_05463849.1| site-specific tyrosine recombinase XerC [Brucella abortus bv. 9 str. C68] gi|256263161|ref|ZP_05465693.1| tyrosine recombinase xerC [Brucella melitensis bv. 2 str. 63/9] gi|256370318|ref|YP_003107829.1| tyrosine recombinase [Brucella microti CCM 4915] gi|260169343|ref|ZP_05756154.1| site-specific tyrosine recombinase XerC [Brucella sp. F5/99] gi|260546037|ref|ZP_05821777.1| tyrosine recombinase xerC [Brucella abortus NCTC 8038] gi|260567595|ref|ZP_05838065.1| tyrosine recombinase xerC [Brucella suis bv. 4 str. 40] gi|260755595|ref|ZP_05867943.1| tyrosine recombinase xerC [Brucella abortus bv. 6 str. 870] gi|260758821|ref|ZP_05871169.1| tyrosine recombinase xerC [Brucella abortus bv. 4 str. 292] gi|260760545|ref|ZP_05872888.1| tyrosine recombinase xerC [Brucella abortus bv. 2 str. 86/8/59] gi|260884621|ref|ZP_05896235.1| tyrosine recombinase xerC [Brucella abortus bv. 9 str. C68] gi|261214868|ref|ZP_05929149.1| tyrosine recombinase xerC [Brucella abortus bv. 3 str. Tulya] gi|261217745|ref|ZP_05932026.1| tyrosine recombinase xerC [Brucella ceti M13/05/1] gi|261220972|ref|ZP_05935253.1| tyrosine recombinase xerC [Brucella ceti B1/94] gi|261315040|ref|ZP_05954237.1| tyrosine recombinase xerC [Brucella pinnipedialis M163/99/10] gi|261316403|ref|ZP_05955600.1| tyrosine recombinase xerC [Brucella pinnipedialis B2/94] gi|261751064|ref|ZP_05994773.1| tyrosine recombinase xerC [Brucella suis bv. 5 str. 513] gi|261755626|ref|ZP_05999335.1| tyrosine recombinase xerC [Brucella suis bv. 3 str. 686] gi|261758859|ref|ZP_06002568.1| tyrosine recombinase xerC [Brucella sp. F5/99] gi|265987475|ref|ZP_06100032.1| tyrosine recombinase xerC [Brucella pinnipedialis M292/94/1] gi|265993679|ref|ZP_06106236.1| tyrosine recombinase xerC [Brucella melitensis bv. 3 str. Ether] gi|265996931|ref|ZP_06109488.1| tyrosine recombinase xerC [Brucella ceti M490/95/1] gi|294851157|ref|ZP_06791830.1| tyrosine recombinase XerC [Brucella sp. NVSL 07-0026] gi|297247158|ref|ZP_06930876.1| tyrosine recombinase XerC [Brucella abortus bv. 5 str. B3196] gi|306843367|ref|ZP_07475968.1| tyrosine recombinase XerC [Brucella sp. BO1] gi|34222806|sp|Q7ZAN7|XERC_BRUSU RecName: Full=Tyrosine recombinase xerC gi|23348785|gb|AAN30808.1| integrase/recombinase XerC [Brucella suis 1330] gi|62196902|gb|AAX75202.1| XerC, integrase/recombinase [Brucella abortus bv. 1 str. 9-941] gi|82616783|emb|CAJ11872.1| Phage integrase:Phage integrase, N-terminal SAM-like [Brucella melitensis biovar Abortus 2308] gi|161336645|gb|ABX62950.1| tyrosine recombinase XerC [Brucella canis ATCC 23365] gi|189020557|gb|ACD73279.1| Phage integrase [Brucella abortus S19] gi|225641719|gb|ACO01633.1| tyrosine recombinase XerC [Brucella melitensis ATCC 23457] gi|256000481|gb|ACU48880.1| tyrosine recombinase [Brucella microti CCM 4915] gi|260096144|gb|EEW80020.1| tyrosine recombinase xerC [Brucella abortus NCTC 8038] gi|260157113|gb|EEW92193.1| tyrosine recombinase xerC [Brucella suis bv. 4 str. 40] gi|260669139|gb|EEX56079.1| tyrosine recombinase xerC [Brucella abortus bv. 4 str. 292] gi|260670977|gb|EEX57798.1| tyrosine recombinase xerC [Brucella abortus bv. 2 str. 86/8/59] gi|260675703|gb|EEX62524.1| tyrosine recombinase xerC [Brucella abortus bv. 6 str. 870] gi|260874149|gb|EEX81218.1| tyrosine recombinase xerC [Brucella abortus bv. 9 str. C68] gi|260916475|gb|EEX83336.1| tyrosine recombinase xerC [Brucella abortus bv. 3 str. Tulya] gi|260919556|gb|EEX86209.1| tyrosine recombinase xerC [Brucella ceti B1/94] gi|260922834|gb|EEX89402.1| tyrosine recombinase xerC [Brucella ceti M13/05/1] gi|261295626|gb|EEX99122.1| tyrosine recombinase xerC [Brucella pinnipedialis B2/94] gi|261304066|gb|EEY07563.1| tyrosine recombinase xerC [Brucella pinnipedialis M163/99/10] gi|261738843|gb|EEY26839.1| tyrosine recombinase xerC [Brucella sp. F5/99] gi|261740817|gb|EEY28743.1| tyrosine recombinase xerC [Brucella suis bv. 5 str. 513] gi|261745379|gb|EEY33305.1| tyrosine recombinase xerC [Brucella suis bv. 3 str. 686] gi|262551399|gb|EEZ07389.1| tyrosine recombinase xerC [Brucella ceti M490/95/1] gi|262764660|gb|EEZ10581.1| tyrosine recombinase xerC [Brucella melitensis bv. 3 str. Ether] gi|263093066|gb|EEZ17216.1| tyrosine recombinase xerC [Brucella melitensis bv. 2 str. 63/9] gi|264659672|gb|EEZ29933.1| tyrosine recombinase xerC [Brucella pinnipedialis M292/94/1] gi|294819746|gb|EFG36745.1| tyrosine recombinase XerC [Brucella sp. NVSL 07-0026] gi|297174327|gb|EFH33674.1| tyrosine recombinase XerC [Brucella abortus bv. 5 str. B3196] gi|306276058|gb|EFM57758.1| tyrosine recombinase XerC [Brucella sp. BO1] gi|326409918|gb|ADZ66983.1| Phage integrase [Brucella melitensis M28] gi|326539631|gb|ADZ87846.1| tyrosine recombinase XerC [Brucella melitensis M5-90] Length = 315 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 46/293 (15%), Positives = 86/293 (29%), Gaps = 35/293 (11%) Query: 71 LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS-------------GDFDYRKITT 116 L E+ KS L+ N+ I++E Q ++ G+ + + Sbjct: 15 LAAAREEWLKSLKTMRRLSDNTLIAYERDTRQFLQFLTGHLGEPPSLKEIGNLRIADLRS 74 Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + + + L +R L + ++ V ++ P++ +P T Sbjct: 75 FLANRRND--GAGARTLGRGLAGVRSLLRHLEKRGLVNAAGASAMRAPRQPKSLPKPLTA 132 Query: 177 EDMQ-------QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQ 227 +D + Q ++ L GLR S++ L + T Sbjct: 133 DDARRVVSADGQMAEEPWIAARNAAVLTLLYGCGLRISEALGLSGDALSDPSARSMTITG 192 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKA 280 K V L K +A F ++A + Sbjct: 193 KGSKTRLVPLLPAVHKAVAQYRALCPFDLSAGQPLFRGAKGGPLHAAIIQREMQKLRAGL 252 Query: 281 GVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 G+ + H +R AT G + G ++ + YT G D RL Sbjct: 253 GLPDSATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYT-GVDTQRL 304 >gi|17986431|ref|NP_539065.1| site-specific tyrosine recombinase XerC [Brucella melitensis bv. 1 str. 16M] gi|256045523|ref|ZP_05448406.1| site-specific tyrosine recombinase XerC [Brucella melitensis bv. 1 str. Rev.1] gi|260562833|ref|ZP_05833319.1| tyrosine recombinase xerC [Brucella melitensis bv. 1 str. 16M] gi|265991947|ref|ZP_06104504.1| tyrosine recombinase xerC [Brucella melitensis bv. 1 str. Rev.1] gi|34222942|sp|Q8YJD9|XERC_BRUME RecName: Full=Tyrosine recombinase xerC gi|17982026|gb|AAL51329.1| integrase [Brucella melitensis bv. 1 str. 16M] gi|260152849|gb|EEW87941.1| tyrosine recombinase xerC [Brucella melitensis bv. 1 str. 16M] gi|263003013|gb|EEZ15306.1| tyrosine recombinase xerC [Brucella melitensis bv. 1 str. Rev.1] Length = 315 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 46/293 (15%), Positives = 86/293 (29%), Gaps = 35/293 (11%) Query: 71 LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS-------------GDFDYRKITT 116 L E+ KS L+ N+ I++E Q ++ G+ + + Sbjct: 15 LAAAREEWLKSLKTMRRLSDNTLIAYERDTRQFLQFLTGHLGEPPSLKEIGNLRIADLRS 74 Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + + + L +R L + ++ V ++ P++ +P T Sbjct: 75 FLANRRND--GAGARTLGRGLAGVRSLLRHLEKRGLVNAAGASAMRAPRQPKSLPKPLTA 132 Query: 177 EDMQ-------QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQ 227 +D + Q ++ L GLR S++ L + T Sbjct: 133 DDARRVVSADGQMAEEPWIAARNAAVLTLLYGCGLRISEALGLSGDALSDPSARSMTITG 192 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKA 280 K V L K +A F ++A + Sbjct: 193 KGSKTRLVPLLPAVHKAVAQYRALCPFDLSAGQLLFRGAKGGPLHAAIIQREMQKLRAGL 252 Query: 281 GVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 G+ + H +R AT G + G ++ + YT G D RL Sbjct: 253 GLPDSATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYT-GVDTQRL 304 >gi|254717978|ref|ZP_05179789.1| site-specific tyrosine recombinase XerC [Brucella sp. 83/13] gi|265982921|ref|ZP_06095656.1| tyrosine recombinase xerC [Brucella sp. 83/13] gi|306838931|ref|ZP_07471758.1| tyrosine recombinase XerC [Brucella sp. NF 2653] gi|306842934|ref|ZP_07475568.1| tyrosine recombinase XerC [Brucella sp. BO2] gi|264661513|gb|EEZ31774.1| tyrosine recombinase xerC [Brucella sp. 83/13] gi|306286862|gb|EFM58387.1| tyrosine recombinase XerC [Brucella sp. BO2] gi|306406001|gb|EFM62253.1| tyrosine recombinase XerC [Brucella sp. NF 2653] Length = 315 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 46/293 (15%), Positives = 86/293 (29%), Gaps = 35/293 (11%) Query: 71 LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS-------------GDFDYRKITT 116 L E+ KS L+ N+ I++E Q ++ G+ + + Sbjct: 15 LAAAREEWLKSLKTMRRLSDNTLIAYERDTRQFLQFLTGHLGEPPSLKEIGNLRIADLRS 74 Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + + + L +R L + ++ V ++ P++ +P T Sbjct: 75 FLANRRND--GAGARTLGRGLAGVRSLLRHLEKRGLVNAAGASAMRAPRQPKSLPKPLTA 132 Query: 177 EDMQ-------QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQ 227 +D + Q ++ L GLR S++ L + T Sbjct: 133 DDARRVVSADGQMAEEPWIAARNAAVLTLLYGCGLRISEALGLSGDALSDPSARSMTITG 192 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKA 280 K V L K +A F ++A + Sbjct: 193 KGSKTRLVPLLPAVHKAVAQYRALCPFDLSAGQPLFRGAKGGPLHAAIIQREMQKLRAGL 252 Query: 281 GVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 G+ + H +R AT G + G ++ + YT G D RL Sbjct: 253 GLPDSATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYT-GVDTQRL 304 >gi|229029889|ref|ZP_04185958.1| Prophage LambdaBa04, site-specific recombinase, phage integrase [Bacillus cereus AH1271] gi|228731397|gb|EEL82310.1| Prophage LambdaBa04, site-specific recombinase, phage integrase [Bacillus cereus AH1271] Length = 378 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 57/378 (15%), Positives = 110/378 (29%), Gaps = 52/378 (13%) Query: 15 RTRHGKIIYYFRKG----HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 R R + G G+R + T A +A T T E K T Sbjct: 6 RKRGNAWSFTIDIGIDPTTGKRQQKSKSGFRTKKEAQNAAATRITEI-EKGIYFDDKQLT 64 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVESR 126 + + + K L S+E I+ + I I+S Sbjct: 65 VLDVWEK-LKPLRKAELK---ITSYEKDMSLVKLYILPPFSYKKIKSIKPVMIQSYYAEL 120 Query: 127 KHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 K + +R +FK AV E + N V++P+ + ++ W+ E+ +F Sbjct: 121 KEKGLSNGTISNIHRCLRCIFKHAVEWEIIHDNIMNKVKKPREEQGEMKTWSSEECNRFL 180 Query: 184 SFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--------------------- 221 + E + + F +Y+G+R + + + + Sbjct: 181 QYLKEKNIKYHMFFLLAIYTGMRRGELLALTWKDIDFDNKRILVNKSLVKTEKGLFKAAI 240 Query: 222 ----------FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271 S F + F N ++ Sbjct: 241 KTKSSNRSISISSFVIGKLQSYYSYKKKEFFRWGIHLNEEAYIFTGNTIHSPLHIDAPHR 300 Query: 272 WFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRI 329 + KAGV + H +R AT+ AG + G ++ + Y+ Sbjct: 301 FLNDHYKKAGVPRIRIHDLRHTHATLMLQAGEHPKIVQDRLGHSSIQMTLDKYSHITQN- 359 Query: 330 RLGIKNSRRISSVVDSDD 347 + + + S++ S++ Sbjct: 360 -MQQQAAENFESIIKSNE 376 >gi|76799205|ref|ZP_00781383.1| integrase [Streptococcus agalactiae 18RS21] gi|76585441|gb|EAO62021.1| integrase [Streptococcus agalactiae 18RS21] Length = 382 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 49/346 (14%), Positives = 101/346 (29%), Gaps = 33/346 (9%) Query: 10 FVTKERTRHGKIIY----YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65 + + ++G Y Y G+R + ST A + + + +S Sbjct: 22 RIESYKKKNGTTAYKFLLYAGYVDGKRKYIRRSGFSTRQSARAALINLQAELEKPKSS-- 79 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 T L ++ K + + I+ K I +++ E Sbjct: 80 ---MTFGMLTKQWLKEYEKTVQGSTYLKTERNINKHILPKLDKVTIGDINPLLVQNLTEE 136 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-----IRPWTKEDMQ 180 + L +R + AVR Y++ NP L + PK K E + Sbjct: 137 WCSQLKYGGKILGLVRNILNLAVRYGYISNNPALPITAPKIKRERKTGNNFYTLNQLKQF 196 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--------------FSIKT 226 ++ + F L ++G+R + L N T Sbjct: 197 LELVEKTDNIEKIALFRLLAFTGIRKGELLALTWDDLNRNTLSINKAVTRTQTGLEIDVT 256 Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ---KMNATQFSIWFKAKATKAGVN 283 + + + L D +++L + + M + W + Sbjct: 257 KTKSSDRLISLDDETLEILQQLHETFPSSTFMFQSESGGIMTPSLPRKWLLQIIKGTDLP 316 Query: 284 K-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGAD 327 + + HG R A++ ++G + ++ G + YT Sbjct: 317 QITVHGFRHTHASLLFESGLSLKQVQHRLGHGDLQTTMNVYTHITQ 362 >gi|300934030|ref|ZP_07149286.1| integrase/recombinase [Corynebacterium resistens DSM 45100] Length = 276 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 49/266 (18%), Positives = 88/266 (33%), Gaps = 27/266 (10%) Query: 94 SFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--------TPSSAIQFLTSMRVLFK 145 +++ D+ G+ + +T+ I + ++ SSA + L S+R L Sbjct: 3 NYQRDIDRYQEWLGEREIADVTSNDIEQHLVWLQNDEPGHKGIARSSAARALASIRSLHD 62 Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-------QPRLAFEF 198 + R++ + N ++V PKR + + T E + + + R E Sbjct: 63 FGEREKLLPSNVAVTVPVPKRGSSIPKALTVEQVSSLLDATPNDAAASLVDIRDRAVLEM 122 Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKLLAMTPIGKETFFI 257 L +G R S+ V + + K V L + L + Sbjct: 123 LYSTGARISELLALDVDDVDQGERMVLVRGKGAKERLVPLGSPASEALEQYVVRARPAMN 182 Query: 258 ---------NNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHEL 307 N +M A +AG+ + H +R AT GA + Sbjct: 183 KKGSPALFLNMRGGRMGRQSGFKTVMQAAERAGLPPVNPHALRHSFATHLLQGGADVRVV 242 Query: 308 MATYGWKTVDQAETYTKG-ADRIRLG 332 G +V + YTK AD +R Sbjct: 243 QELLGHSSVATTQIYTKVTADHLREM 268 >gi|13541094|ref|NP_110782.1| integrase/recombinase [Thermoplasma volcanium GSS1] gi|14324479|dbj|BAB59407.1| integrase / recombinase [Thermoplasma volcanium GSS1] Length = 283 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 44/273 (16%), Positives = 92/273 (33%), Gaps = 22/273 (8%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP- 130 + + + + + ++ + + G ++T I Sbjct: 6 ESYVENFVSYMVGERKSKYTIKEYKFLVSKFLAFVGKTP-AEVTPMDIERYKTFLASKAH 64 Query: 131 -SSAIQFLT--SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S A Q+L ++++ +K + V + P P+R +E+ + S Sbjct: 65 YSKASQYLAIKAIKLFYKSLDLRYPVNLTP------PRRSMHMPVYLNEEEASRLLSASK 118 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELPDGFMKLL 245 + + L Y+G+R + C + + I +K+ K V +P+ + L Sbjct: 119 KSVKYSAVISVLAYTGIRVGELCNLRIGDVDMQEGIIYVKSGKGDKDRIVVMPNECVSAL 178 Query: 246 AMTPIG-------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296 + FI+N K + + + K + +AG+NK + H +R AT Sbjct: 179 KEYLNWRISVETPHDFLFISNKKSRYDPSTVERMVKRLSQEAGINKRVTPHVLRHTFATS 238 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRI 329 G + G +V + YT D Sbjct: 239 VLRNGGDIRFIQQILGHSSVATTQIYTHLDDNA 271 >gi|291558084|emb|CBL35201.1| Site-specific recombinase XerD [Eubacterium siraeum V10Sc8a] Length = 476 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 51/384 (13%), Positives = 117/384 (30%), Gaps = 50/384 (13%) Query: 14 ERTRHGKIIYYFRKGHG-----------RRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62 ++ ++G+ RK + + + + + L + + Sbjct: 6 KKRKNGEGTLRLRKDGRWEGRIVVGYNEKSLPITKCVTAKTKTECSTKLEALKEQYGRSS 65 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRS 121 K I + ++ +L + +R +E ++ II + G +++ ++ Sbjct: 66 DKIKPDMPFGDWIDFWYQTYCRHTLRITTRTDYENRIYNHIIPEIGKIPLNRLSQSDLQQ 125 Query: 122 GVES--------------RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167 + + + + R + AV++ + NP + + P +K Sbjct: 126 FYAKEKTDGRKLHAKTYGKGLSDRTIRGIHANCRTALQRAVQEGLIRTNPAVGCKLPPKK 185 Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227 ++ T+ ++ +F E L F L +G+R + L ++ Sbjct: 186 AREMQVLTQNEIIRFLHQAKEEGYYEL-FLLELGTGMRRGEILALKWSDLNFATGELRIG 244 Query: 228 KTGTIITVELPDGFMK--------------------LLAMTPIGKETFFINNDKQKMNAT 267 + II E+ K ++ + N + Sbjct: 245 RQVYIIKAEVIISAPKTKASIRTVILPPSLIKTLAVYKETVDSEWMFPSPTDNGRPRNPS 304 Query: 268 QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325 + +AG K H +R AT++ + G L AT G + + Y+ Sbjct: 305 SVRKRLQLILERAGCKKVRFHDLRHTFATMALEHGMDVKTLSATIGHVSSATTLDIYSHI 364 Query: 326 AD-RIRLGIKNSRRISSVVDSDDP 348 D R + R D+ P Sbjct: 365 TDTMQRQAAVHIDRKIGGTDAQMP 388 >gi|160934246|ref|ZP_02081633.1| hypothetical protein CLOLEP_03117 [Clostridium leptum DSM 753] gi|156866919|gb|EDO60291.1| hypothetical protein CLOLEP_03117 [Clostridium leptum DSM 753] Length = 314 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 41/299 (13%), Positives = 91/299 (30%), Gaps = 41/299 (13%) Query: 85 GSLAVNSRISFESYFDQIIRK-------------SGDFDYRKITTKH--------IRSGV 123 + + + R + IT + + Sbjct: 5 KGKSPKTVQEYFFDLRTFFRYMKIKKNLTAADTEFSEIPIDDITIDFLSMVSLTDVYEFM 64 Query: 124 E----SRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 R++ ++ + S+R F++ + + NP +E PK+K + T E Sbjct: 65 NFVTIERENKNAARARKSASLRAFFQYLTNKTHQLKENPVQELETPKQKKSLPKYLTLEQ 124 Query: 179 MQQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 + + R L+ GLR ++ + ++ + T K + Sbjct: 125 SIDLLNAVDGPFRERDYCILTLFLNCGLRLAELVGLNLNDIRPDHTMRVTGKGNKERMIY 184 Query: 237 LPDGFMKLLAMTPIGKETFF---------INNDKQKMNATQFSIWFKAKATKAGVN---K 284 L K + + I++ +++ + K G++ Sbjct: 185 LNSACQKAIEEYLKVRPNPMSVSDKKALFISHLNKRLGRQAVQNIVQKYLKKIGLDGQGY 244 Query: 285 SAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342 SAH +R +AT+ G L G + + E YT +++ ++ +S V Sbjct: 245 SAHKLRHTAATLMYQHGNVDIRVLKDILGHQNLGTTEIYTHLSNQQMEDAADANPLSKV 303 >gi|114775560|ref|ZP_01451128.1| site-specific recombinase, phage integrase family protein [Mariprofundus ferrooxydans PV-1] gi|114553671|gb|EAU56052.1| site-specific recombinase, phage integrase family protein [Mariprofundus ferrooxydans PV-1] Length = 331 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 48/322 (14%), Positives = 102/322 (31%), Gaps = 12/322 (3%) Query: 11 VTKERTRHGKIIYYFR-KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 + K + ++G+ Y + G+ + + + + + +++++ + T Sbjct: 3 IQKRKWKNGRTTYRVQVYHRGKVVADATFDFRRDAQLFEAEVKTKLQRGDFVDTRLAERT 62 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--K 127 + Y ++ +S + KI T I +SR + Sbjct: 63 LFGEALERYAENIVPRKKGARQEMSRVRTLSR--SSLVRLPLSKIRTPDIIKYRDSRLKE 120 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQE---YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 P+S L + LF A R Y++ V ++T R + Q Sbjct: 121 VGPNSVRLELAVISHLFTVASRDWGMNYLSNPVARGVMPSVKQTARDRRLQPGEEDQLMQ 180 Query: 185 FWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 E G F L + +R ++ + + NI + K G V L + Sbjct: 181 ACKEYGGVIGDIVMFALETAMRRAEIASLRWEDIHGNIARLHDTKNGERRDVPLSSRARE 240 Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGA 302 ++ + S F AG+ + H +R + + + G Sbjct: 241 IIHRRAKVRSLNDKRVFGIA--PNGISQAFSRVCKHAGIVDLRFHDLRHEATSRLFERGL 298 Query: 303 TAHELMATYGWKTVDQAETYTK 324 ++ + G KT+ + YT Sbjct: 299 NPMQVASITGHKTLQMLKRYTH 320 >gi|221133384|ref|ZP_03559689.1| Tyrosine recombinase xerC [Glaciecola sp. HTCC2999] Length = 383 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 59/356 (16%), Positives = 103/356 (28%), Gaps = 28/356 (7%) Query: 6 RLPPF--VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63 LP + +T G Y FR + L + + A A P + Sbjct: 29 NLPKGFRIEIRKTSKGIGTYRFRTK-VKDHNLGRTNALSLEQALQQA-AQLIPSPTPPHI 86 Query: 64 PRKKPT---------TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRK 113 P P TL +Y L + + ES + +I G Sbjct: 87 PLSPPIAQASPTCTFTLNEFWEQYYWPHIKTRL--RTCRNIESMWRIRIQPTFGHQRLDD 144 Query: 114 ITTKHIRSGVE---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170 I + + + S + + +F A++ E + NPC VE K + Sbjct: 145 IKVLELERFQTSLIEMQLSGSHVTGHIKLLSRMFTLAIQWELITKNPCDKVEYMKFDNQK 204 Query: 171 IRPWTKEDMQQFKSFWSEGS--QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228 R + ++ +F S E L FLL +G+R + + I Sbjct: 205 ERFLSSDEQTRFISVLMEHPERPVNLLMIFLLVTGVRSGVAKSLRWSWINMEKQIITVPP 264 Query: 229 ----TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN- 283 T+ L M +L T+ N ++ F FK A ++ Sbjct: 265 SIAKNKKQNTIFLNTTAMDILKRLAGINPTYVFINPMTQLPYNDFKKSFKTALKAAQISD 324 Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337 H +R + + + Y K + D +R + + Sbjct: 325 SVRIHDLRHTFCSNLVSNNVSLASVQQLANHACYSTTLRYAKVSQDTLREACQIAA 380 >gi|29840081|ref|NP_829187.1| site-specific tyrosine recombinase XerC [Chlamydophila caviae GPIC] gi|75539745|sp|Q823T9|XERC_CHLCV RecName: Full=Tyrosine recombinase xerC gi|29834429|gb|AAP05065.1| site-specific recombinase, phage integrase family [Chlamydophila caviae GPIC] Length = 312 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 38/294 (12%), Positives = 92/294 (31%), Gaps = 42/294 (14%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGD---------------------FDYRKIT 115 +Y K+ + ++ ++ + + T Sbjct: 10 DYLKNIKTA--SPHTLRNYCIDLNSFKSFLEKQGELSPSSPICLLTKERKETELPFSLFT 67 Query: 116 TKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 +R V + + L++++ ++ ++ + +P ++ P+ E Sbjct: 68 KDSVRLYVLELMQENKAKRTIKRRLSAIKSFSQYCIKNRIIFEDPTETIHGPRLPKELPS 127 Query: 173 PWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228 P T E ++ + G + R E SGLR S+ + N I+ + Sbjct: 128 PITYEQVEILMATPDLSKYTGFRDRCLLELFYSSGLRISEIVAINHWDIDFNSNLIRIRG 187 Query: 229 T-GTIITVELPDGFMKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWFKAKAT 278 V + + L E + D Q ++ F+ Sbjct: 188 KGKKERLVPMTPHAAQWLQQYLHHPERAHVEQDPQAFFLNRFGKRLTTRSIDRKFQKYLR 247 Query: 279 KAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 ++G++ + H +R AT + G + A G +++ YT + +++ Sbjct: 248 QSGLSGSITPHTIRHTIATHWLENGMDLKTIQALLGHSSLETTTIYTHVSMKLK 301 >gi|4186110|emb|CAA71790.1| putative integrase [Cupriavidus necator] Length = 401 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 59/370 (15%), Positives = 108/370 (29%), Gaps = 28/370 (7%) Query: 7 LPPFVTKERTRHGKI----IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE--- 59 L P + T G+ Y G R+ L E T A A R Sbjct: 27 LVPGFLCKVTPAGRKVFMLQYRTNAGERRKPALGLYGELTVEQARSLAQEWLAEVRRGGD 86 Query: 60 --YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITT 116 + +K T+ L ++ + +++ +E + I+ G + +T Sbjct: 87 PGAAKTAARKAPTVAELCVKFMEDHSKQRNKPSTQAGYEKCIKRNIVPMLGRMKVQDVTR 146 Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 I ++ H P+ A + + MR +F A Y P Sbjct: 147 PDIAGTMKKMAHKPADANRTFSVMRKMFNLAEVWGYRPDGTNPCRHVPMYPNGKATHLIS 206 Query: 177 EDMQQFKSFWSE----------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226 ++ + + + LA R S+ + + Sbjct: 207 DEEMGKLFRYLDYLETDGLGLDHAVLPLAIRLQFEFAGRRSEIVTLQWDWVDLENRRVVW 266 Query: 227 QK-----TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 ++ E L N+ Q + ++ + +AG Sbjct: 267 PDSKTGGMSKPLSEEAYRLLCTALRQDDCPHVFPSPNHPGQHLTTGEYYGGWTRILKRAG 326 Query: 282 V-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIK-NSRR 338 V + HG+R SAT A++G MA KTV Y D+ +R + + R Sbjct: 327 VSHVGTHGIRHRSATDIANSGIPVKVGMALTAHKTVAMFMRYVHTEDKPVREAAELVANR 386 Query: 339 ISSVVDSDDP 348 + + P Sbjct: 387 RKKITGAHRP 396 >gi|126178708|ref|YP_001046673.1| phage integrase family protein [Methanoculleus marisnigri JR1] gi|125861502|gb|ABN56691.1| tyrosine recombinase XerC subunit [Methanoculleus marisnigri JR1] Length = 304 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 39/288 (13%), Positives = 90/288 (31%), Gaps = 32/288 (11%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK----------------SGDFDYRK- 113 + + + + + + + R + Sbjct: 6 FSEWLDRFSSYLRMRNYSPRTIEKYLQTIRRFARYAWLRQNSDGVSFDGAAFENAPLDAD 65 Query: 114 ------ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167 + T E + + P + + ++++ +K+ Q V +P L VERP+ K Sbjct: 66 VNVSSALVTDFFSYLSEQQDYKPKTLHRMISTLSSFYKYLYVQGAVVADPMLGVERPRIK 125 Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227 + ++ K E + RL + +G+R S+ C V+ + +I+ + Sbjct: 126 NQELKYL-KHSQVLRLINTIESERDRLIVRLIYATGVRVSELCAICVEDIDFEEQTIRVK 184 Query: 228 KT-GTIITVELPDGFMKLLAMTPIGKETFFIN--NDKQKMNATQFSIWFKAKATKAGVNK 284 I TV + + ++ + + ++ FK A +G+ Sbjct: 185 GKGDKIRTVFIDEETLEEINRFIGNTIEGPLFSGQQGNHLSPRTVQHLFKQYAP-SGI-- 241 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG--ADRIR 330 + H +R A+ + G ++ E Y +R R Sbjct: 242 TPHKIRHSYASELYRRSKNLRVVQENLGHSSIKTTEIYLHTDIDERKR 289 >gi|315604216|ref|ZP_07879282.1| tyrosine recombinase XerD [Actinomyces sp. oral taxon 180 str. F0310] gi|315313922|gb|EFU61973.1| tyrosine recombinase XerD [Actinomyces sp. oral taxon 180 str. F0310] Length = 316 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 37/287 (12%), Positives = 91/287 (31%), Gaps = 33/287 (11%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRK 127 L+ ++ + ++ ++ + +R G ++ + + Sbjct: 5 DALVRDWVDYLRVEKGASTHTVSNYLRDASRYVRDMESRGRATLTDVSAHDVEEHLAGLA 64 Query: 128 HT--------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 PSS + ++R L ++A+ + + ++ + P++ + + + +++ Sbjct: 65 SGQVSGRPAAPSSVARACAAIRGLHRYALAEGVLNVDVTAQLRAPRQGSHLPKALSVDEV 124 Query: 180 QQFKSFWS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234 + G + E L +G R S++ L + + G Sbjct: 125 GRLLDAAHADDTPIGLRDAALLELLYATGARVSEAVALSADDLDLDGQVPVVRLFGKGRK 184 Query: 235 VE--------------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280 +LA G F+N+ ++ + A A Sbjct: 185 ERIVPVGSFAIEALDAYRVRARPVLAARGSGSTALFLNSRGSALSRQSAWTAIRRAAQAA 244 Query: 281 GV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 + S H +R AT + GA+ E+ G +V + YT+ Sbjct: 245 NLAHRVSPHTLRHSFATHLLEGGASVREVQELLGHASVATTQIYTRV 291 >gi|261207287|ref|ZP_05921975.1| predicted protein [Enterococcus faecium TC 6] gi|289566174|ref|ZP_06446608.1| predicted protein [Enterococcus faecium D344SRF] gi|260078502|gb|EEW66205.1| predicted protein [Enterococcus faecium TC 6] gi|289162035|gb|EFD09901.1| predicted protein [Enterococcus faecium D344SRF] Length = 382 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 52/365 (14%), Positives = 119/365 (32%), Gaps = 48/365 (13%) Query: 13 KERTRHGKIIYYFRKG------HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 + + ++G+ ++ F+ G+++R T A ALT + E + Sbjct: 6 QYKKKNGEKLWKFQTYLGVDPLTGKQVRTTRRGFKTKKEA-QLALTKLQLEYENNGLNKT 64 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 K T + + + + + + E + + I+ G + KIT + + Sbjct: 65 KELTFQEVYDLWIVNYEQTVKESSFVKTKEQFANHILPAFGAYKINKITIDIAQKFANEK 124 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 +F+ + + +A++ Y+ NP + PKRK T + + Sbjct: 125 VKKFVLYREFINNASRICDYAIKLGYLQDNPLKKITVPKRKVSVHEEDTLNFFSKEELEI 184 Query: 187 SE-------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------- 232 + F L ++G+R + + + N IK KT Sbjct: 185 FLKSVEKKKDIRMYSFFRTLAFTGMRVGELLALTWKDIDFNDNYIKINKTLARGKNRRLY 244 Query: 233 ----------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF------------- 269 + + D M +L + + + + ++ Q Sbjct: 245 VEQPKTKNSKRDIPVDDETMNILKKWRLEQRKWLLTLGINTLSKNQLVFSNQKNEYLQLS 304 Query: 270 --SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKG 325 W + + + + + HG+R A++ +AGA ++ G ++ Y Sbjct: 305 KPRKWLEVIIKQNNLKRITIHGLRHTHASLLLEAGANIKDVQERLGHSSIQITMDLYIHI 364 Query: 326 ADRIR 330 D+ + Sbjct: 365 TDKRK 369 >gi|227903645|ref|ZP_04021450.1| bacteriophage integrase [Lactobacillus acidophilus ATCC 4796] gi|227868532|gb|EEJ75953.1| bacteriophage integrase [Lactobacillus acidophilus ATCC 4796] Length = 385 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 51/382 (13%), Positives = 121/382 (31%), Gaps = 51/382 (13%) Query: 11 VTKERTRHGKIIY----YF--RKGHGRRIRLPYPHESTFIPAYMSALT-GSTPKREYINS 63 + + T GK Y Y + G I++ + A + L + Sbjct: 5 IKEYTTPSGKKRYGFNLYVGVDETTGHSIQIRKQGYKSKKEAQEAYLNYQLKIIKGEYIP 64 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG 122 K T L + K ++ ++ + YF+ I+++ G K+T + Sbjct: 65 ESKGHITFNKLYEMWLKLYR-ETVKTSTYATTTRYFEDHILKQLGSKYIDKLTVLDCQKA 123 Query: 123 VE-SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 V P + +F+ + + + + ++ P + +P+T + Sbjct: 124 VNIWFNDAPKTYKRFMRYTNNVLNYGINNLELISKNPMNKVIPPKAKNEPKPFTDFYSKD 183 Query: 182 FKSFWSEGSQPRLAFEFLL-----YSGLRCSDSCRAGVQHLQNNI--------------- 221 + + ++ F+ YSG+R ++ + Sbjct: 184 ELNTFLRNAKEYNFKYFVFFRLLAYSGMRKGEALALKWSDINFKDNTISINKDVTVGLNN 243 Query: 222 --FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF---------- 269 + + + T+++ M+ L + ++ + +N Sbjct: 244 ELYEDTPKTENSFRTLDMDATTMEYLKEWRLMQQKTMLELGYNFLNIDNLLFPTINNGYL 303 Query: 270 -----SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TY 322 W A K + + HG R A++ +AGA+ +E+ A G ++ Y Sbjct: 304 SMSKPRQWNVAICKKYDLRRIKIHGFRHTHASLLFEAGASMNEVKARLGHADINTTMNIY 363 Query: 323 TKGADRIRLGIKNSRRISSVVD 344 T D + + ++ +V+ Sbjct: 364 THVTDDQK--KDTANKLVRLVE 383 >gi|26991906|ref|NP_747331.1| site-specific tyrosine recombinase XerC [Pseudomonas putida KT2440] gi|34222832|sp|Q88CF1|XERC_PSEPK RecName: Full=Tyrosine recombinase xerC gi|24987029|gb|AAN70795.1|AE016723_7 integrase/recombinase XerC [Pseudomonas putida KT2440] Length = 299 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 38/279 (13%), Positives = 88/279 (31%), Gaps = 21/279 (7%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESRKH-- 128 + Y ++ ++ + +++ + G D++ + + +R + H Sbjct: 5 LEAYCAHLRNERQVSEHTSQGYRRDLEKVIAYCEEHGIADWQALQIQQLRQLIARLHHHG 64 Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS--- 184 +P S + L+++R L+++ R+ +P + PK + + + Q Sbjct: 65 QSPRSLARLLSAVRGLYRYLNREGLCQHDPANGLSAPKGERRLPKVLDTDRALQLLDGGV 124 Query: 185 -FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFM 242 + + E SGLR S+ + HL K G + + Sbjct: 125 DDDFIARRDQAILELFYSSGLRLSELTNLDLDHLDLAAGLVQVLGKGGKARVLPVGRKAR 184 Query: 243 KLLAMTP-------IGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSA 294 + L FI +++ + K + G + H +R A Sbjct: 185 EALQAWYRLRGIGNPRDRAVFITRQGNRISPRAVRLRVKVAGERELGQHLHPHMLRHSFA 244 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 + ++ + G + + YT D L Sbjct: 245 SHVLESSQDLRAVQEMLGHADISTTQIYTH-LDFQHLAA 282 >gi|254462175|ref|ZP_05075591.1| phage integrase [Rhodobacterales bacterium HTCC2083] gi|206678764|gb|EDZ43251.1| phage integrase [Rhodobacteraceae bacterium HTCC2083] Length = 295 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 39/267 (14%), Positives = 78/267 (29%), Gaps = 17/267 (6%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 L + + ++ ++ + G T +R+ S Sbjct: 9 LRTRMIEDMRIRGMSPKTQQTHIRAVRYFSEFIGRSP-DTATPDELRAYQLHMTDAGVST 67 Query: 134 ---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-EG 189 + S+R F +E + + + + E++ + G Sbjct: 68 GVFNARIVSLRFFFGMTCGREEMKRFMQFRRKA----KKLPVVLSVEEVGDLLAAVPGPG 123 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAM 247 + R A +GLR S+ C + + ++ + K L G + LL Sbjct: 124 LKYRAALGISYGAGLRASEVCNLKISDIDSDRMLIHVDEGKNDKDRKAMLSPGSLDLLRD 183 Query: 248 TPIGKETFFINNDKQKM----NATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301 + + Q + F + AG+NK + H +R AT +AG Sbjct: 184 YWREARPEGWLFPGKPKIMALSPRQLNRAFTSAKHMAGINKPATLHTLRHSFATHLLEAG 243 Query: 302 ATAHELMATYGWKTVDQAETYTKGADR 328 + G + YT A + Sbjct: 244 TDVRVIQVLLGHSKLSTTARYTHVATK 270 >gi|163761399|ref|ZP_02168473.1| site-specific tyrosine recombinase XerC [Hoeflea phototrophica DFL-43] gi|162281394|gb|EDQ31691.1| site-specific tyrosine recombinase XerC [Hoeflea phototrophica DFL-43] Length = 316 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 35/277 (12%), Positives = 76/277 (27%), Gaps = 29/277 (10%) Query: 76 SEYRKSA-HWGSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSGVESR 126 + LA + ++E Q + D + +R+ + R Sbjct: 22 QRWLAQLTEERRLADKTAEAYERDLRQFLGFLTLHLGGPPKISDLADLRPLDLRAFMAER 81 Query: 127 KHTPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + + A L +R + R+ + PK+ +P + D ++ Sbjct: 82 RREGAGARTLGRGLAGIRSFLRHLERKGLANAAGATATRAPKQPKSLPKPLSARDARRVV 141 Query: 184 SF-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT----- 231 ++ L GLR S++ + + S++ G Sbjct: 142 DADLQLSDEPWIAARDAAVLTLLYGCGLRISEALGLTRNDIPRDGESLRITGKGGKTRIV 201 Query: 232 ---IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSA 286 I +++L P F + +A + + + Sbjct: 202 PLLPIARSAISDYLELSPFRPAADAPMFRGARGCPLQPAIVQKAMRALRSALDLPETATP 261 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 H +R AT G + G ++ + YT Sbjct: 262 HALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYT 298 >gi|27817681|emb|CAD61108.1| putative site specific recombinase [Cupriavidus oxalaticus] Length = 402 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 59/370 (15%), Positives = 108/370 (29%), Gaps = 28/370 (7%) Query: 7 LPPFVTKERTRHGKI----IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE--- 59 L P + T G+ Y G R+ L E T A A R Sbjct: 28 LVPGFLCKVTPAGRKVFMLQYRTNAGERRKPALGLYGELTVEQARSLAQEWLAEVRRGGD 87 Query: 60 --YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITT 116 + +K T+ L ++ + +++ +E + I+ G + +T Sbjct: 88 PGAAKTAARKAPTVAELCVKFMEDHSKQRNKPSTQAGYEKCIKRNIVPMLGRMKVQDVTR 147 Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 I ++ H P+ A + + MR +F A Y P Sbjct: 148 PDIAGTMKKMAHKPADANRTFSVMRKMFNLAEVWGYRPDGTNPCRHVPMYPNGKATHLIS 207 Query: 177 EDMQQFKSFWSE----------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226 ++ + + + LA R S+ + + Sbjct: 208 DEEMGKLFRYLDYLETDGLGLDHAVLPLAIRLQFEFAGRRSEIVTLQWDWVDLENRRVVW 267 Query: 227 QK-----TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 ++ E L N+ Q + ++ + +AG Sbjct: 268 PDSKTGGMSKPLSEEAYRLLCTALRQDDCPHVFPSPNHPGQHLTTGEYYGGWTRILKRAG 327 Query: 282 V-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIK-NSRR 338 V + HG+R SAT A++G MA KTV Y D+ +R + + R Sbjct: 328 VSHVGTHGIRHRSATDIANSGIPVKVGMALTAHKTVAMFMRYVHTEDKPVREAAELVANR 387 Query: 339 ISSVVDSDDP 348 + + P Sbjct: 388 RKKITGAHRP 397 >gi|163843939|ref|YP_001628343.1| site-specific tyrosine recombinase XerC [Brucella suis ATCC 23445] gi|163674662|gb|ABY38773.1| tyrosine recombinase XerC [Brucella suis ATCC 23445] Length = 315 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 46/293 (15%), Positives = 86/293 (29%), Gaps = 35/293 (11%) Query: 71 LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS-------------GDFDYRKITT 116 L E+ KS L+ N+ I++E Q ++ G+ + + Sbjct: 15 LAAAREEWLKSLKTMRRLSDNTLIAYERDTRQFLQFLTGHLGEPPSLKEIGNLRIADLRS 74 Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + + + L +R L + ++ V ++ P++ +P T Sbjct: 75 FLANRRND--GAGARTLGRGLAGVRSLLRHLEKRGLVNAAGASAMRAPRQPKSLPKPLTA 132 Query: 177 EDMQ-------QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQ 227 +D + Q ++ L GLR S++ L + T Sbjct: 133 DDARRLVSADGQMAEEPWIAARNAAVLTLLYGCGLRISEALGLSGDALSDPSARSMTITG 192 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKA 280 K V L K +A F ++A + Sbjct: 193 KGSKTRLVPLLPAVHKAVAQYRALCPFDLSAGQPLFRGAKGGPLHAAIIQREMQKLRAGL 252 Query: 281 GVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 G+ + H +R AT G + G ++ + YT G D RL Sbjct: 253 GLPDSATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYT-GVDTQRL 304 >gi|46580167|ref|YP_010975.1| phage integrase family site specific recombinase [Desulfovibrio vulgaris str. Hildenborough] gi|46449584|gb|AAS96234.1| site-specific recombinase, phage integrase family [Desulfovibrio vulgaris str. Hildenborough] gi|311233841|gb|ADP86695.1| integrase family protein [Desulfovibrio vulgaris RCH1] Length = 373 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 47/317 (14%), Positives = 94/317 (29%), Gaps = 19/317 (5%) Query: 25 FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS--PRKKPTTLKWLISEYRKSA 82 +R G + AY + + K R + + + Y Sbjct: 34 YRHGGKKVWETIGRKSEGVNAAYAARVRAERVKEVEAGRFIARDEMPVFRDALERYLTVH 93 Query: 83 HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLTS 139 G + + + + I GD +I HI + + +P + + Sbjct: 94 AKGKSSESHMRGYFEH--HIAPLFGDAKMDRIKPIHIEELKRSMAEKGRSPQTIRHAIAL 151 Query: 140 MRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ-PRLAFE 197 +R +++ V Y +P VE PK +R T+ + S+ Sbjct: 152 VRQVYRKCVAWGIYTGTSPTDGVEMPKVDAARLRFLTEAEAASLLHALHRRSRQWHDIAY 211 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF 256 LY+G+R + V H+ + G ++LA G++ Sbjct: 212 LSLYTGMRLGEVLGLQVGHVNVADGVIDVMDAKAGTRAAYMTAGVKEILAARCAGRDAKE 271 Query: 257 INNDKQKMNA-TQFSIWFKAKATK--------AGVNKSAHGVRKFSATISADAGATAHEL 307 ++ S F A + A H +R + A G + + Sbjct: 272 FVFVQRGGGRVRYISSVFSRVADELFNDGVTDARHKVVFHTLRHTFGSWLAQRGVPLYTI 331 Query: 308 MATYGWKTVDQAETYTK 324 G +++ + Y+K Sbjct: 332 AVLMGHSSLEMTKRYSK 348 >gi|255325242|ref|ZP_05366348.1| tyrosine recombinase XerC [Corynebacterium tuberculostearicum SK141] gi|255297807|gb|EET77118.1| tyrosine recombinase XerC [Corynebacterium tuberculostearicum SK141] Length = 305 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 46/312 (14%), Positives = 93/312 (29%), Gaps = 31/312 (9%) Query: 57 KREYINSPRKKPTTLKWLISEYRK-SAHWGSLAVNSRISFESYFDQII---RKSGDFDYR 112 + K + I ++ H A + + S + +FD Sbjct: 3 EDGKSAKTPKVEGQMAEAIEDFADFQLHVKGRAEATVRGYRSDLRDLARSVPTFAEFDLN 62 Query: 113 KITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 + + E + + S+ + + + WAVR+ ++ + + PK Sbjct: 63 SLRQWLAEAVAEGK--SRSTLARRTAAAKGFSTWAVREGHLKRDVAARLVTPKVGRHLPT 120 Query: 173 PWTKEDMQQFKSFWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKT 226 E + + E L SG+R ++ R + + + T Sbjct: 121 VLAPEQAGELMGNAVSADEVHFLRDSAILELLYASGMRVAELVRLDLGDIDFQRGTLHVT 180 Query: 227 QKTGTIITVELPDGFMKLLAMTPIG---------KETFFINNDKQKMNATQFSIWFKAKA 277 K V L E F+ + +++ Q + A Sbjct: 181 GKGNKQRVVPFGHAAEDALKQWIDKGRGEIAAAGTEAVFVGSRGGRIDQRQVRRIVEKAA 240 Query: 278 TKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 G + HGVR +AT + GA + G +++ + YT + + Sbjct: 241 KVTGTQGLTPHGVRHSAATHLLEGGADLRVVQELLGHSSLNTTQIYTHVS---------A 291 Query: 337 RRISSVVDSDDP 348 +R+ V D P Sbjct: 292 QRLQRVYDQAHP 303 >gi|251773381|gb|EES53930.1| phage integrase family protein [Leptospirillum ferrodiazotrophum] Length = 344 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 50/334 (14%), Positives = 111/334 (33%), Gaps = 30/334 (8%) Query: 16 TRHGKIIYYFR-KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 T+ G + + + + G ++ + + + G + +++ + TT+ Sbjct: 5 TKRGDLQWQVKIRRKGFTLQSRTFNSKAESETWARLVEGEMDRGVFVDRSESEKTTVAEA 64 Query: 75 ISEYRKSAHW--GSLA-VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHT 129 Y + A +IS+ G I + + + + H+ Sbjct: 65 FDRYEREVAVLKKGYAQEKYKISYWR-----KSSFGQRYIANIRPTDLAAWRDEYLKTHS 119 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 PS+ + L + LF A+++ + NP + +P+ R + S Sbjct: 120 PSTVNRLLIVLSHLFTIAIKEWGMGNLVNPVQQIRKPRFPRGRDRRLLPGEENVLLSACK 179 Query: 188 E-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKL 244 G L F L +G+R S+ Q + ++ K G V L +++ Sbjct: 180 AYGGDLSLLVRFALETGMRRSEIAGMTWQMVDLKKRTVTLLVTKNGDKRIVPLSPEAVRI 239 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAK------ATKAG--------VNKSAHGVR 290 L+ P + + + +A+ K G ++ + H +R Sbjct: 240 LSTLPRRLDDQVWEGKPGSITQAFMRVVTRARGAYEKECEKKGAKPDPTFLLDLTFHDLR 299 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + + + G ++ A G KT+ + YT Sbjct: 300 HEATSRFFEKGLNPMQVAAITGHKTLQMLKRYTH 333 >gi|254518936|ref|ZP_05130992.1| site-specific tyrosine recombinase XerC [Clostridium sp. 7_2_43FAA] gi|226912685|gb|EEH97886.1| site-specific tyrosine recombinase XerC [Clostridium sp. 7_2_43FAA] Length = 457 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 42/303 (13%), Positives = 98/303 (32%), Gaps = 49/303 (16%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRK--------------SGDFDYRKITTKHIRSGV 123 Y ++ + N+ +E R + D R I +R Sbjct: 151 YLETI--KGKSPNTIKGYEIDLTLFFRFLKIYKGLITDDSLEFSEIDIRDIDNSFVRKIK 208 Query: 124 ------------ESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEG 170 + R++ + + + +++ FK+ + + + NP L +E PK Sbjct: 209 LTDLYAFLSFAEKQRENGSYARARKVAALKSYFKFLNGKAKIIDDNPTLELESPKINKRH 268 Query: 171 IRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226 + ++ S + + + L G+R S+ C + ++ + +I Sbjct: 269 PVYLSLDESVNLLSSLDKDNKNYYRDYCILTLFLNCGMRLSELCSIKLDKIKGDTLTIIG 328 Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINN----------DKQKMNATQFSIWFKAK 276 + TV L + +K + ++T + +N + K Sbjct: 329 KGD-KERTVYLNEACLKAIDNYLAVRDTSKCTPEDKEYLLLSSRYKPINKRTVELLVKKH 387 Query: 277 ATKAGV---NKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADR-IRL 331 +G+ + H +R +AT+ G L + G + + + YT + +R Sbjct: 388 IFNSGLSNEKYTPHKLRHTAATLMYKHGNVDIRSLQSILGHENISTTQIYTHVDEEILRD 447 Query: 332 GIK 334 + Sbjct: 448 AVN 450 >gi|84501636|ref|ZP_00999808.1| tyrosine recombinase [Oceanicola batsensis HTCC2597] gi|84390257|gb|EAQ02816.1| tyrosine recombinase [Oceanicola batsensis HTCC2597] Length = 310 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 39/289 (13%), Positives = 93/289 (32%), Gaps = 29/289 (10%) Query: 72 KWLISEYRKSAH-WGSLAVNSRISFESYF--------DQIIRKSGDFDYRKITTKHIRSG 122 + ++++ + + ++ + + G ++TT +R+ Sbjct: 10 RDALADWLSGMKSLRGASEATIGAYRRDLVDYLSFMTEHLGGPQGIAALGRVTTSDMRAW 69 Query: 123 VESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + + S + L++++ ++W +E + + P LS P+ + RP ++ Sbjct: 70 MARERGAGLGARSLARKLSAVKTFYRWLAEREGLEVTPVLSARAPRYQRSLPRPLAEDAA 129 Query: 180 QQFK-------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 + + ++ L GLR S++ V L K G Sbjct: 130 RAMIETVGSSDTRPWVAARDAAVVTLLYGCGLRISEALSLTVDDLPLGDSLRIRGKGGKE 189 Query: 233 IT-------VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285 + + +++++ F ++A + G+ + Sbjct: 190 RIVPLIAPARQAVEAYLEIMPHPVTSGAPLFRAIRGGALSARTVQKSMERARMGLGLPAT 249 Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R AT AG + G ++ + YT G D RL Sbjct: 250 ATPHAMRHSFATHLLSAGGDLRSIQDLLGHASLSTTQVYT-GVDTARLM 297 >gi|313669090|ref|YP_004049374.1| integrase/recombinase [Neisseria lactamica ST-640] gi|313006552|emb|CBN88016.1| putative integrase/recombinase [Neisseria lactamica 020-06] Length = 302 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 40/291 (13%), Positives = 90/291 (30%), Gaps = 29/291 (9%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGVES 125 Y ++ + ++ ++ ++++ + G + ++ + + + Sbjct: 6 FAAHFDAYLENIVREGKSEHTVAAYRRDLEELLAQMPSEAEGGVP-QDLSRRDFTAALRR 64 Query: 126 RKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + + L+S R W V++ + +P + PK+ + +E + + Sbjct: 65 LSQRGLNARTLARKLSSWRQYCAWLVKRGLMRADPTAGISPPKQPQRIPKALPQEWLNRM 124 Query: 183 KSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVE 236 +G + FE + SGLR S+ + + + T K V Sbjct: 125 LDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQVP 184 Query: 237 LPDGFMKLLAMTPIGKETFFIN---NDKQKMNATQFSIWFKAKATKA-----GVNKSAHG 288 L + L ++T + K A A G + S H Sbjct: 185 LTGKSAEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAINGDGRHVSPHM 244 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 +R A A + G ++ + YTK L + R+ Sbjct: 245 MRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK------LDFDHIARL 289 >gi|268610075|ref|ZP_06143802.1| prophage LambdaBa04, site-specific recombinase, phage integrase family protein [Ruminococcus flavefaciens FD-1] Length = 395 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 46/393 (11%), Positives = 105/393 (26%), Gaps = 73/393 (18%) Query: 15 RTRHGKIIYYFRKG--HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 R R K YYF G+R R+ +T A + + ++ Sbjct: 7 RKRGKKWEYYFEIAKMDGKRKRISKGGFNTKAEAVSEGVKAMHEYQTAGTVNTPSELSMH 66 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 ++ + + +L + +++ Y I K G + IT + ++ + Sbjct: 67 DYLNYWIEMYCIPNLKPTTVANYKKYIRLHISPKIGKYRLATITAEQLQKLINDMVANGY 126 Query: 132 SAIQFL---TSMRVLFKW-AVRQEYVAINPCLSVERPKRKT-------EGIRPWTKEDMQ 180 S + + + Y+ +P V+ PK K+ + Sbjct: 127 SKNTVIGIKGVLSSSLNYAVQPLHYLKTSPMAYVKIPKGSRTNYRSSQYKREVIEKDIID 186 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-----------------NIFS 223 + + +GS L F + G+R ++ ++ + Sbjct: 187 EIFVRFPKGSSTYLPLMFAYHCGMRLGEAFAITWDNVNFTDRTVTINKQLQWDLEKKFWY 246 Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN------------------------ 259 + K + T+++ + ++LL + Sbjct: 247 LTPPKYNSSRTIDIDETIVELLKEMQEKQIRAKEYYADEYSLIYYDEELGINESTGNVID 306 Query: 260 ---------DKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMAT 310 Q S + H +R T +AG + Sbjct: 307 FVNVYENGGFIQPRTIQHTSQVIHKFYPA----FTFHSLRHTHCTRLLEAGLPIKYVQER 362 Query: 311 YGWKTVDQAE-TYTK----GADRIRLGIKNSRR 338 G K + Y A+ + +++ + Sbjct: 363 LGHKNISVTMDIYNHLTQSQAELSKRALEDVFK 395 >gi|99081269|ref|YP_613423.1| phage integrase [Ruegeria sp. TM1040] gi|99037549|gb|ABF64161.1| phage integrase [Ruegeria sp. TM1040] Length = 317 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 44/293 (15%), Positives = 97/293 (33%), Gaps = 34/293 (11%) Query: 73 WLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSG---VESR 126 IS + + A N+ +++ + + ++ I + ++ Sbjct: 9 QWISTFLDAQAAELGAARNTLLAYGRDLRNVTTWMRTKGQSFAQMQQADIEAYLISCDAE 68 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + ++ + L++++ ++++A + + NP L ++ P R + + ++ + + Sbjct: 69 GLSRATRARRLSAIKQIYRFAFEEGWRQDNPALQIKGPGRDKSLPKTLDEAEVDRLLAAA 128 Query: 187 SE-------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238 E + E L +G+R S+ V + + + K G V L Sbjct: 129 REVGRTEADRLRNTCLMELLYATGMRVSELVSLPVSATRGDPNMLLILGKGGKERMVPLS 188 Query: 239 DGFMKLLAMTPI----------------GKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 L + + F + + + +F + K A GV Sbjct: 189 PPARAALGAWIVLRDSLEDKREGQGHKASRFLFPSRSKEGHLTRHRFYLLIKELAVAGGV 248 Query: 283 ---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 + H +R AT GA + A G + E YT D RL Sbjct: 249 SPEKVTPHTLRHAFATHLLQNGADLRAIQALLGHADIATTEIYTHVLD-ARLA 300 >gi|323340466|ref|ZP_08080721.1| tyrosine recombinase XerC [Lactobacillus ruminis ATCC 25644] gi|323092010|gb|EFZ34627.1| tyrosine recombinase XerC [Lactobacillus ruminis ATCC 25644] Length = 372 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 37/351 (10%), Positives = 95/351 (27%), Gaps = 35/351 (9%) Query: 15 RTRHGKII----YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 ++ +GK +Y G R + ++ ++ ++ K + Sbjct: 6 KSSNGKWRVRISWYDSTGTRRFKSKAGFSTKAEASRWARSM----EIKKDDSTITDKSVS 61 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--H 128 E+ ++ ++ + + ++ G +IT + + + H Sbjct: 62 FAQYFDEWFRTYKENKISYITAGKYRVIQSKLAEFYGSRKIDEITRRDYQRFINEYGACH 121 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 P S + + +R K A+ + + + +VE + + K Sbjct: 122 APESVKKTNSIIRSCVKSAILDDLITKDFTQNVELVWNSDREHKVDYLNVNEINKLAAYL 181 Query: 189 GSQP------RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242 S+ + +G+R + + N +I K + + Sbjct: 182 ESKLDPRYTSYYMIYTAIMTGMRLQEIAALTWDDINFNWKTIDINKAWDFVLKKYIPTKT 241 Query: 243 K---------------LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--- 284 + + + F N + + + + G+NK Sbjct: 242 ESSTRIIRVNSKLLDIIAQLKSNHSGMVFCNASGTIPTSAGCNKTLRKSLRQLGINKPSY 301 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTV-DQAETYTKGADRIRLGIK 334 H +R + G + + G + Y D +R Sbjct: 302 HFHALRHSHVALLLYKGVDIYAISKRLGHSDLTTTTRRYAYLIDELRQKAD 352 >gi|148550339|ref|YP_001270441.1| site-specific tyrosine recombinase XerC [Pseudomonas putida F1] gi|166918895|sp|A5WAU7|XERC_PSEP1 RecName: Full=Tyrosine recombinase xerC gi|148514397|gb|ABQ81257.1| tyrosine recombinase XerC subunit [Pseudomonas putida F1] Length = 299 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 37/279 (13%), Positives = 86/279 (30%), Gaps = 21/279 (7%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR------SGVESRK 127 + Y ++ ++ + + +++I + + I+ + + Sbjct: 5 LEAYCAHLRNERQVSEHTLLGYRRDLEKVIAYCKEHGIAEWQALQIQQLRQLIARLHHHG 64 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS--- 184 +P S + L+++R L+++ R+ +P + PK + + + Q Sbjct: 65 QSPRSLARLLSAVRGLYRYLNREGLCQHDPATGLSAPKGERRLPKVLDTDRALQLLDGGV 124 Query: 185 -FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFM 242 + + E SGLR S+ + HL K G + + Sbjct: 125 DDDFIARRDQAILELFYSSGLRLSELTNLDLDHLDLAAGLVQVLGKGGKARVLPVGRKAR 184 Query: 243 KLLAMTP-------IGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSA 294 + L FI +++ + KA + G + H +R A Sbjct: 185 EALQAWYRLRGIGNPRDRAVFITRQGNRISPQAVRLRVKAAGERELGQHLHPHMLRHSFA 244 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 + ++ + G + + YT D L Sbjct: 245 SHVLESSQDLRAVQEMLGHADISTTQIYTH-LDFQHLAA 282 >gi|302343256|ref|YP_003807785.1| integrase family protein [Desulfarculus baarsii DSM 2075] gi|301639869|gb|ADK85191.1| integrase family protein [Desulfarculus baarsii DSM 2075] Length = 304 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 40/292 (13%), Positives = 92/292 (31%), Gaps = 30/292 (10%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD------------YRKITTKHIRSGV 123 + + + ++ + R +G+ ++ + + Sbjct: 15 EAFCARLSAEGRSPATIAAYRRDLALVARVAGELAPGIVCRAVTAGFLDQVFSDGAVTES 74 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 E + +S + ++R F WAV V NP S+ + + T + ++ Sbjct: 75 ERGPRSAASVHRMKAAVRAFFAWAVEVGVVDDNPARSIRMHRLPRKLPVFLTTAEKKRLL 134 Query: 184 -----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 + R E LL +G+R + + + + ++ + G + V+ Sbjct: 135 KELKGRTDFSALRDRAMIEVLLGTGIRLGELAALDMDDIDLDAKHLRVRAKGNVPQVKFI 194 Query: 239 DGFMKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWFKAKATKAGVNK--SAH 287 ++ L + + + + ++ Q + KAG+ K + H Sbjct: 195 KTDLRTLLRRYLAERRRHGRPEMEALFLSNRDGRLCQRQIANRLAHWLRKAGIEKELTPH 254 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 G+R AT A + G + V + YT D + R+ Sbjct: 255 GLRHTFATHLYSATNDLLVVQRALGHRDVSTTQVYTHLVDGQ--LEEALERL 304 >gi|296444833|ref|ZP_06886796.1| integrase family protein [Methylosinus trichosporium OB3b] gi|296257781|gb|EFH04845.1| integrase family protein [Methylosinus trichosporium OB3b] Length = 434 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 52/367 (14%), Positives = 94/367 (25%), Gaps = 45/367 (12%) Query: 10 FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYM-----SALTGSTPKREYINSP 64 FV + R G R RR+ + T A A + Sbjct: 42 FVVEYRPNGGG-----RGVAKRRVTIGKVGTLTPEQARKSAGELLARARLGADPAQEIAD 96 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 R+K T+ L + G L ++R S+++ ++ G +T I + Sbjct: 97 RRKAQTVAALCDAFEVEHVDGKLKPSTRASYKAALARLKDAHGSAKAESVTRAQIATLHA 156 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW---------- 174 +P A + L++ LF W + + +V + E + + + Sbjct: 157 KLATSPYVANRALSTWAKLFAWGMTRSFVPKGDNPAREIDRYRESKRERFLTGDELGRLG 216 Query: 175 ---------------------TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213 K + A L+ +G R + A Sbjct: 217 AALAEGETAGLPYAVDATKAKAKHAPKPENRLVKLDPFAVAAIRLLILTGARLREIMDAQ 276 Query: 214 VQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN--ATQFSI 271 + + + T + E K Sbjct: 277 WSQVDFQRGMLFLADSKTGRKPIYLGAAALAVLADLPRIEGNPHIIAGAKDGAPRADLQR 336 Query: 272 WFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRI 329 + A AG+ H +R A++ A A + G E Y AD + Sbjct: 337 PWAAVRQAAGLEGVRLHDLRHSFASVGAGASLGLPIIGKLLGHMQAATTERYAHLDADPL 396 Query: 330 RLGIKNS 336 R Sbjct: 397 RRAADTI 403 >gi|254466241|ref|ZP_05079652.1| phage integrase [Rhodobacterales bacterium Y4I] gi|206687149|gb|EDZ47631.1| phage integrase [Rhodobacterales bacterium Y4I] Length = 313 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 41/292 (14%), Positives = 90/292 (30%), Gaps = 37/292 (12%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR-------KITTKHIRSGVE 124 IS + + + N+ +++ + I I + Sbjct: 9 QWISTFLDAQAAETGASQNTLLAYGRDLKDLTAWLEHRSLDFSTASQDDIEAYLI--SCD 66 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 ++ S+ + L++++ ++++A + + NP + + P R+ + ++ + Sbjct: 67 AQGLARSTRARRLSAVKQIYRFAFEEGWRQDNPAIQIRGPGREKRLPKTLEVIEVDRLLE 126 Query: 185 FWS-------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVE 236 + + E L +G+R ++ V + + + K G V Sbjct: 127 AARQTGRSEADRLRNTCLMELLYATGMRVTELVSLPVSAARGDPRMLLILGKGGKERMVP 186 Query: 237 LPDGFMKLLAMT----------------PIGKETFFINNDKQKMNATQFSIWFKAKATKA 280 L + LA P + F + +F + K A Sbjct: 187 LSPPAREALAQWLLVRDAAEDERELKGNPASRFLFPSRGKSGHLTRHRFYLLIKELAVTG 246 Query: 281 GV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 G+ + H +R AT GA + A G + E YT D Sbjct: 247 GLSPDKVTPHTLRHAFATHLLANGADLRAIQALLGHADIATTEIYTHVLDAR 298 >gi|307545892|ref|YP_003898371.1| site-specific recombinase, phage integrase family [Halomonas elongata DSM 2581] gi|307217916|emb|CBV43186.1| site-specific recombinase, phage integrase family [Halomonas elongata DSM 2581] Length = 352 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 49/334 (14%), Positives = 111/334 (33%), Gaps = 26/334 (7%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 +T G RK + + YI + TL+ Sbjct: 6 KTPSGSWKAVIRKTGWP-TTAKTFRTKRDAQDWARRTEDEMVRGVYIQRSASERMTLEAA 64 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT----- 129 + Y +++ S + +I G + +T + I + ++R ++ Sbjct: 65 LKRYLADVTPTK-KPSTQKSERHKANTLIEHLGKYSLAALTPELIANFRDTRLNSLGRRG 123 Query: 130 -PSSAIQF---LTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 P SA L + L+ A+++ + NP ++ +P R + ++ ++ Sbjct: 124 QPISANTVRLELALLGHLYTVAIQEWGLGLTYNPVQNIRKPSPGEGRDRRLSADEEKRLF 183 Query: 184 SFWSEGSQPRLAFEFL--LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------IITV 235 + + S P LA+ L +G+R S+ + ++ T +T Sbjct: 184 AVLRQHSNPMLAWIARIALETGMRSSEILTLTRSQVDVKRRVVRLTDTKNNEARLVPLTQ 243 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQ----KMNATQFSIWFKAKATKAGVN-KSAHGVR 290 + F + L + + + K ++ + +AG++ H +R Sbjct: 244 AATEVFKQALNNPVRPFDCDLVFFGEPGKDGKRGPYAYTKLWNQAKKQAGLDDFRFHDLR 303 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + + +AG + E+ G K++ YT Sbjct: 304 HEAVSRLVEAGLSDQEVATISGHKSMQMLRRYTH 337 >gi|325680115|ref|ZP_08159681.1| site-specific recombinase, phage integrase family [Ruminococcus albus 8] gi|324108190|gb|EGC02440.1| site-specific recombinase, phage integrase family [Ruminococcus albus 8] Length = 395 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 46/389 (11%), Positives = 102/389 (26%), Gaps = 70/389 (17%) Query: 15 RTRHGKIIYYFRKG--HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 R R K YYF G+R R+ +T A + + ++ Sbjct: 7 RKRGKKWEYYFEIAKMDGKRKRISKGGFNTKAEAVSEGVKAMHEYQTAGTVNTPSELSMH 66 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 ++ + + +L + +++ Y I K G + IT + ++ + Sbjct: 67 DYLNYWIEMYCIPNLKPTTVANYKKYIRLHISPKIGKYRLATITAEQLQKLINDMVANGY 126 Query: 132 SAIQFL---TSMRVLFKW-AVRQEYVAINPCLSVERPKRKT-------EGIRPWTKEDMQ 180 S + + + Y+ +P V+ PK K+ + Sbjct: 127 SKNTVIGIKGVLSSSLNYAVQPLHYLKTSPMAYVKIPKGSRTNYRSSQYKREVIEKDIID 186 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-----------------NIFS 223 + + +GS L F + G+R ++ ++ + Sbjct: 187 EIFVRFPKGSSTYLPLMFAYHCGMRLGEAFAITWDNVNFADRTVTINKQLQWDLEKKFWY 246 Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN------------------------ 259 + K + T+++ + ++LL + Sbjct: 247 LTPPKYNSSRTIDIDETIVELLKELQEKQIRAKEYYADEYSLIYYDEELGINESTGNVID 306 Query: 260 ---------DKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMAT 310 Q S + H +R T +AG + Sbjct: 307 FVNVYENGGFIQPRTIQHTSQVIHKFYPA----FTFHSLRHTHCTRLLEAGLPIKYVQER 362 Query: 311 YGWKTVDQAE-TYTKGA-DRIRLGIKNSR 337 G K + Y ++ L + Sbjct: 363 LGHKNISVTMDIYNHLTQNQAELSKRALE 391 >gi|313501207|gb|ADR62573.1| XerC [Pseudomonas putida BIRD-1] Length = 299 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 38/279 (13%), Positives = 88/279 (31%), Gaps = 21/279 (7%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESRKH-- 128 + Y ++ ++ + +++ + G D++ + + +R + H Sbjct: 5 LEAYCAHLRNERQVSEHTSQGYRRDLEKVIAYCEEHGIADWQALQIQQLRQLIARLHHHG 64 Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS--- 184 +P S + L+++R L+++ R+ +P + PK + + + Q Sbjct: 65 QSPRSLARLLSAVRGLYRYLNREGLCQHDPATGLSAPKGERRLPKVLDTDRALQLLDGGV 124 Query: 185 -FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFM 242 + + E SGLR S+ + HL K G + + Sbjct: 125 DDDFIARRDQAILELFYSSGLRLSELTNLDLDHLDLAAGLVQVLGKGGKARVLPVGRKAR 184 Query: 243 KLLAMTP-------IGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSA 294 + L FI +++ + K + G + H +R A Sbjct: 185 EALQAWYRLRGIGNPRDRAVFITRQGNRISPRAVRLRVKVAGERELGQHLHPHMLRHSFA 244 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 + ++ + G + + YT D L Sbjct: 245 SHVLESSQDLRAVQEMLGHADISTTQIYTH-LDFQHLAA 282 >gi|325918374|ref|ZP_08180505.1| tyrosine recombinase XerC subunit [Xanthomonas vesicatoria ATCC 35937] gi|325535397|gb|EGD07262.1| tyrosine recombinase XerC subunit [Xanthomonas vesicatoria ATCC 35937] Length = 302 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 37/283 (13%), Positives = 88/283 (31%), Gaps = 26/283 (9%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD----------FDYRKITTKHIRSGV 123 + + ++ ++ ++ ++ + + D ++ + +R V Sbjct: 4 VEAFLAYLQVERQVSAHTLDAYRRDLAALLSWAAEQKNDAGVAVALDVAQLDSAQLRQFV 63 Query: 124 ESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + SA + L++ R + W ++ + +P ++ PK + + ++ Sbjct: 64 AAEHRRGLSAKSLQRRLSACRSYYAWLLKHGRITASPAAALRAPKAPRKLPQVLDADEAV 123 Query: 181 QFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVE 236 + G + R E SGLR S+ C + L + K G V Sbjct: 124 RLVEVPTDAPLGLRDRALLELFYSSGLRLSELCALRWRDLDLASGLVMVLGKGGKQRLVP 183 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQ-----KMNATQFSIWFKAKATKAGV--NKSAHGV 289 + + L + ++ I K A + G+ + H + Sbjct: 184 VGSHAIAALREWQRDSGGRAETHVFPGRAGGAISQRAVQIRIKQLAVRQGMFKDVHPHML 243 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 R A+ ++ + G + + YT D L Sbjct: 244 RHSFASHILESSGDLRGVQELLGHSDIATTQIYTH-LDFQHLA 285 >gi|116618278|ref|YP_818649.1| tyrosine recombinase XerC subunit [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097125|gb|ABJ62276.1| tyrosine recombinase XerC subunit [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 300 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 31/279 (11%), Positives = 86/279 (30%), Gaps = 27/279 (9%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRK 127 + L +Y +S + + ++ + + G + ++ T +R + Sbjct: 6 EQLYHDYLESE--RQYSPQTLKAYLTDIAEFKNYLHESGGFTKFGEVQTLDVRVYLNDLY 63 Query: 128 HT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-----WTKEDM 179 ++ + ++S+R+ +++ + ++ NP S+ K + + + Sbjct: 64 EKKLARTTISRKISSLRMFYQFLITNQFAIDNPFDSISLKKHQNQLPDFFYEDELHELFD 123 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-----------NIFSIKTQK 228 + + EFL +G+R ++ + L N Sbjct: 124 VAYNHEDYLWERNAALLEFLYATGIRVAEIAGLTLSQLDFSQRLVLIHGKGNKDRYVPFG 183 Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 ++ ++ E F+N+ + + + ++ + Sbjct: 184 HFAENIMKEYITDLRASLTVNQEHEYVFVNHRGEPITPAGITYILNQLMQRSALTGKIHP 243 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 H +R AT + GA + G + + YT Sbjct: 244 HMLRHTFATHLINRGADMRTVQELLGHVNLSTTQMYTHV 282 >gi|300173202|ref|YP_003772368.1| tyrosine recombinase XerC [Leuconostoc gasicomitatum LMG 18811] gi|299887581|emb|CBL91549.1| tyrosine recombinase XerC [Leuconostoc gasicomitatum LMG 18811] Length = 303 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 35/279 (12%), Positives = 87/279 (31%), Gaps = 28/279 (10%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-------FDYRKITTKHIRSGVES 125 L Y +S + + ++ S D+ + + + + + + Sbjct: 7 QLYQVYIESE--RQYSPLTLKAYLSDIDEFVIFLTKNGGFINFKTVQILDVRVYLNDLYE 64 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW-----TKEDMQ 180 RK ++ + ++S+R+ +++ + ++V NP +V K + + T Sbjct: 65 RKLARTTISRKISSLRMFYQFMIANQFVTDNPFDNVALRKHENHLPEFFYETEMTTLFDV 124 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD 239 + + EFL +G R ++ L + + K V Sbjct: 125 AYNPEDLLWQRNAAILEFLYATGARVAEIANLMTTQLDFSQRLVLIHGKGNKDRYVPFGH 184 Query: 240 GFMKLLAMT-----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 + L+ + + F+N+ + + + ++ + Sbjct: 185 FAAQALSQYLKETRPKLIAKQVPHDFVFVNHRGEPITTAGITYILNELMKRSTLTGKIHP 244 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 H +R AT + GA + G + + YT Sbjct: 245 HMLRHTFATHLLNNGADMRTVQELLGHVNLSTTQMYTHV 283 >gi|228923867|ref|ZP_04087144.1| Site-specific recombinase, phage integrase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228948859|ref|ZP_04111134.1| Site-specific recombinase, phage integrase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228810821|gb|EEM57167.1| Site-specific recombinase, phage integrase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228835666|gb|EEM81030.1| Site-specific recombinase, phage integrase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 322 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 41/269 (15%), Positives = 82/269 (30%), Gaps = 22/269 (8%) Query: 83 HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTS 139 + + F +R+ IT KH++ + P++ +++ Sbjct: 38 QAEGFRKRTIDDYTKLFHYFMRELNIEKVEIITAKHVQMYINKLLSRELAPATINIRISA 97 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPRLA 195 ++ +FK Q Y+ NP + + + I +++ G + A Sbjct: 98 LKSVFKRLHEQGYIKSNPAVDFVKLRTDEAPIFTLNNNQIKRLFRVVDKTTYAGYRDYCA 157 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPDGFMKLLAMTPIG 251 +L+ GLR ++ + L + +I K V + + L M Sbjct: 158 MLLMLHCGLRVNEVNQLEANDLDFDNLTIMLSGAKNKNRKTRAVPMTKKIAEELRMLIDE 217 Query: 252 KETFFINNDKQKMNATQ-------FSIWFKAKATKAGVNK----SAHGVRKFSATISADA 300 +F + AG++K S H +R AT Sbjct: 218 SREYFEGTTNVFLTQDGNSIDNDLLRKRMYRYGQLAGLSKECRPSPHSLRHTFATNFLRN 277 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329 G + + LM G + Y + D Sbjct: 278 GGSVNALMRIMGHADITTTMRYVRLNDEA 306 >gi|182420557|ref|ZP_02643923.2| site-specific recombinase, phage integrase family [Clostridium perfringens NCTC 8239] gi|182379696|gb|EDT77175.1| site-specific recombinase, phage integrase family [Clostridium perfringens NCTC 8239] Length = 361 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 45/303 (14%), Positives = 99/303 (32%), Gaps = 50/303 (16%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKS-----------------------GDFDYRKI 114 Y ++ SL N+ + + GD + I Sbjct: 53 YLENVKGKSL--NTVKGYSVDLGLFFKFLKVYKGLENNIELEKIEEVEISDLGDNFIKDI 110 Query: 115 TTKHIRSGVES----RKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTE 169 T I + + R ++ + + + +++ FK+ + + + NP + +E PK Sbjct: 111 TLSDIYAFLAFLEKVRNNSAYARARKVATLKSFFKFLNSKIKLIDENPTVELESPKINKR 170 Query: 170 GIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225 T + + +G+ + L G+R S+ C ++ ++ + +I Sbjct: 171 HPVYLTLDQSITVLNSMDKGNKNYYRDYCILTLFLNCGMRLSELCNIEIEKIKGDTLTII 230 Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKE----------TFFINNDKQKMNATQFSIWFKA 275 + TV L + + + + F+++ + +N I K Sbjct: 231 GKGN-KERTVYLNEASIAAIENYLKNRNDSKATEEAKKYLFLSSKYRPINKRSVEILVKK 289 Query: 276 KATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADR-IR 330 AG + H +R +AT+ G L G + + + YT D +R Sbjct: 290 HIENAGFKDQKYTPHKLRHTAATLMYKYGNVDIRSLQNILGHENISTTQIYTHVDDETLR 349 Query: 331 LGI 333 + Sbjct: 350 EAV 352 >gi|18310145|ref|NP_562079.1| site-specific tyrosine recombinase XerC [Clostridium perfringens str. 13] gi|18144824|dbj|BAB80869.1| probable integrase/recombinase [Clostridium perfringens str. 13] Length = 450 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 45/303 (14%), Positives = 99/303 (32%), Gaps = 50/303 (16%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKS-----------------------GDFDYRKI 114 Y ++ SL N+ + + GD + I Sbjct: 142 YLENVKGKSL--NTVKGYSVDLGLFFKFLKVYKGLENNIELEKIEEVEISDLGDNFIKDI 199 Query: 115 TTKHIRSGVES----RKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTE 169 T I + + R ++ + + + +++ FK+ + + + NP + +E PK Sbjct: 200 TLSDIYAFLAFLEKVRNNSAYARARKVATLKSFFKFLNSKIKLIDENPTVELESPKINKR 259 Query: 170 GIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225 T + + +G+ + L G+R S+ C ++ ++ + +I Sbjct: 260 HPVYLTLDQSITVLNSMDKGNKNYYRDYCILTLFLNCGMRLSELCNIEIEKIKGDTLTII 319 Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKE----------TFFINNDKQKMNATQFSIWFKA 275 + TV L + + + + F+++ + +N I K Sbjct: 320 GKGN-KERTVYLNEASIAAIENYLKNRNDSKATEEAKKYLFLSSKYRPINKRSVEILVKK 378 Query: 276 KATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADR-IR 330 AG + H +R +AT+ G L G + + + YT D +R Sbjct: 379 HIENAGFKDQKYTPHKLRHTAATLMYKYGNVDIRSLQNILGHENISTTQIYTHVDDETLR 438 Query: 331 LGI 333 + Sbjct: 439 EAV 441 >gi|294791028|ref|ZP_06756186.1| tyrosine recombinase XerD [Scardovia inopinata F0304] gi|294458925|gb|EFG27278.1| tyrosine recombinase XerD [Scardovia inopinata F0304] Length = 318 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 44/274 (16%), Positives = 89/274 (32%), Gaps = 30/274 (10%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRKHTP---SSAIQFLT 138 LA + ++ES + + I+ +++ V S S + L Sbjct: 31 RGLAAATVKAYESDLIKYVSWLTHKKVTDPGQISQQNVEDFVASLSLAGESQKSIARRLA 90 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-------SQ 191 S+ ++ + + + +V+ PK T +++ + S + Sbjct: 91 SIHEYHRYLSSRGQIQTDVSQTVKPPKAAAHLPDVLTIDEVSRMMEMTSTERDTDPVILR 150 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPI 250 R EFL +G R S++ + L + + K V L L Sbjct: 151 DRALLEFLYATGARVSEAVGLNMTDLDLDSRCARLMGKGSKQRLVPLGSYACSALNRYLH 210 Query: 251 GKETF--------------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294 G + F+N ++++ +A A +A ++K H +R A Sbjct: 211 GPRQYLQDKARSGPELRAVFLNKRGKRLSRQSVWEIVQAAANRAHISKEVHPHTLRHSCA 270 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADR 328 T GA + G +V + YT + + Sbjct: 271 THLIRGGADVRTVQELLGHASVTTTQLYTHISPQ 304 >gi|227431599|ref|ZP_03913636.1| site-specific recombinase XerD [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352657|gb|EEJ42846.1| site-specific recombinase XerD [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 300 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 31/279 (11%), Positives = 86/279 (30%), Gaps = 27/279 (9%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRK 127 + L +Y +S + + ++ + + G + ++ T +R + Sbjct: 6 EQLYHDYLESE--RQYSPQTLKAYLTDIAEFKNYLHESGGFTKFGEVQTLDVRVYLNDLY 63 Query: 128 HT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-----WTKEDM 179 ++ + ++S+R+ +++ + ++ NP S+ K + + + Sbjct: 64 EKKLARTTISRKISSLRMFYQFLIINQFAIDNPFDSISLKKHQNQLPDFFYEDELHELFD 123 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-----------NIFSIKTQK 228 + + EFL +G+R ++ + L N Sbjct: 124 VTYNHEDHLWERNAALLEFLYATGIRVAEIAGLTLSQLDFSQRLVLIHGKGNKDRYVPFG 183 Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 ++ ++ E F+N+ + + + ++ + Sbjct: 184 HFAENIMKEYITDLRASLTVNQEHEYVFVNHRGEPITPAGITYILNQLMQRSALTGKIHP 243 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 H +R AT + GA + G + + YT Sbjct: 244 HMLRHTFATHLINRGADMRTVQELLGHVNLSTTQMYTHV 282 >gi|221199203|ref|ZP_03572247.1| tyrosine recombinase XerD [Burkholderia multivorans CGD2M] gi|221206600|ref|ZP_03579612.1| tyrosine recombinase XerD [Burkholderia multivorans CGD2] gi|221173255|gb|EEE05690.1| tyrosine recombinase XerD [Burkholderia multivorans CGD2] gi|221180488|gb|EEE12891.1| tyrosine recombinase XerD [Burkholderia multivorans CGD2M] Length = 316 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 46/275 (16%), Positives = 83/275 (30%), Gaps = 26/275 (9%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS----GVESRKHTPSSA 133 + + LA N+ ++ + + R +S+ Sbjct: 36 WLEH----GLARNTLDAYRRDLTLFSQWLAATHDAALDAADETMLTGYIAARRDGKATSS 91 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWSEG 189 + L+ R + WAVR+ + +P L + K+ ++ ++ G Sbjct: 92 NRRLSVFRRYYGWAVREHRASADPTLRIASAKQAARFPSTLSEAQVEALLGAPDIATPLG 151 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT 248 + R E + SGLR S+ + N ++ V + + Sbjct: 152 LRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGSKERLVPFGEVAHGWIERY 211 Query: 249 PIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296 F+ M QF K A +A V + S H +R AT Sbjct: 212 LREARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRAHLSPHTLRHAFATH 271 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 + GA + G + + YT A R RL Sbjct: 272 LLNHGADLRVVQLLLGHADISTTQIYTHVA-RERL 305 >gi|149194209|ref|ZP_01871307.1| Phage integrase [Caminibacter mediatlanticus TB-2] gi|149136162|gb|EDM24640.1| Phage integrase [Caminibacter mediatlanticus TB-2] Length = 268 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 38/260 (14%), Positives = 97/260 (37%), Gaps = 13/260 (5%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESRKHTPSSA 133 ++ K + ++ + ++E+ + + + + IT + + + Sbjct: 9 AEKFLKFIAKTN-SLQTHRTYENVLKEALNFIELESNIIDITPYRLHIAN----LSKKTI 63 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193 + ++ +R F + ++ Y + E K +P + E++++ Sbjct: 64 AKKVSVLRSFFDFLKQEGY--KFKIVGDEHIKVPKTLPKPISLENIKEALKV--ANMDEY 119 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT--PIG 251 LA + GLR S++ + + + IK + + L + + Sbjct: 120 LAIIVIFSLGLRISEALNIKLSDIHGDWIEIKGKGN-KTRILPLHPKLKEFIQKYLKINP 178 Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATY 311 K+ + D +K + Q + K G++ + H +R AT D GA +++ Sbjct: 179 KKEYLFEKDGKKYSENQLRYNIQKAFKKIGIHATPHQLRHSFATYMLDKGARINDVSELL 238 Query: 312 GWKTVDQAETYTKGADRIRL 331 G + + + YTK ++ ++L Sbjct: 239 GHEFISTTQIYTKLSNSLKL 258 >gi|221134095|ref|ZP_03560400.1| tyrosine recombinase [Glaciecola sp. HTCC2999] Length = 304 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 39/281 (13%), Positives = 96/281 (34%), Gaps = 21/281 (7%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV---ESRK 127 + + + +++++ ++ ++ + +T + ++ V + Sbjct: 13 DKWVQAFAEQLKVERQYSIHTQSAYINHILVCKDLLTLKKWSSLTVEQVKRMVGLSKKAG 72 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + S L+++R + V Q + NP +V PK + E ++ +F Sbjct: 73 LSARSIALRLSALRQFCHFLVEQHQLTQNPAEAVNAPKMGKPLPKHLHVEQLEGLLNFTP 132 Query: 188 EG---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 E ++ + FE + GLR S+ + + ++ K G + + + + Sbjct: 133 ESVHEARDKAMFELVYGCGLRLSEVTGLNLLDVLDDHILNVNGKGGKQRRLPIGEHAWRA 192 Query: 245 LAMTPIGKETFFIN-----------NDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRK 291 + + + F + ++ Q + ATK G++ S H +R Sbjct: 193 VQDWLLWRVQFITSAAPDEPALFLSQRGGRLGNRQVAKRLTQLATKQGIDTHISPHKLRH 252 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 AT ++ + G + + YT D L Sbjct: 253 SFATHVLESSGDLRAVQELLGHANLATTQVYTH-LDFQHLA 292 >gi|228950418|ref|ZP_04112578.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228809233|gb|EEM55694.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 369 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 49/366 (13%), Positives = 114/366 (31%), Gaps = 44/366 (12%) Query: 17 RHGKIIYYFRKGH-----GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + G G+R + + T A + + + TL Sbjct: 7 KRGNKYCIVIDIGPNPETGKRRQKWFSGYKTKKEA-QADVAKKITELNEGTFIEPSKVTL 65 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 + ++ + + S+ ++ + + ++ + +I G K+ HI+ ++ Sbjct: 66 EDYLNHWLE-IKSMSIERSTFVGYRAFLNQHVIPSIGMVALHKLNVMHIQKCYKTAIDKG 124 Query: 131 SSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + L ++ AV+Q ++ NP E PK++ I+ WT+E++++F Sbjct: 125 IANNSVLLMHRILKSALNLAVKQNIISRNPADFAEIPKKERTSIQTWTEEEVKKFLLHSQ 184 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--------------TGTII 233 E S+ + + + +G+R + Q + ++ + + Sbjct: 185 E-SRYHIGYLLAITTGMRMGEVLGLRWQDVDFEKHTVTINQTSGHDNKIKKTAKTNSSKR 243 Query: 234 TVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKAKATK 279 T+ +P ++ L + N + F F Sbjct: 244 TIPVPKETIECLKKHKVLINQEKLRLGSAYQDFDLINCNEFGMIIKKANFRKNFIRAIHN 303 Query: 280 AGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSR 337 AGV H +R ATI G + G + Y+ + + + Sbjct: 304 AGVKEIKFHDLRHTHATILLKQGVNPKIISERLGHTDISMTLSVYSHVLPN--MQEEAVK 361 Query: 338 RISSVV 343 + Sbjct: 362 NFGKSI 367 >gi|225628115|ref|ZP_03786150.1| tyrosine recombinase XerC [Brucella ceti str. Cudo] gi|237816277|ref|ZP_04595270.1| tyrosine recombinase XerC [Brucella abortus str. 2308 A] gi|225616940|gb|EEH13987.1| tyrosine recombinase XerC [Brucella ceti str. Cudo] gi|237788344|gb|EEP62559.1| tyrosine recombinase XerC [Brucella abortus str. 2308 A] Length = 317 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 46/293 (15%), Positives = 86/293 (29%), Gaps = 35/293 (11%) Query: 71 LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS-------------GDFDYRKITT 116 L E+ KS L+ N+ I++E Q ++ G+ + + Sbjct: 17 LAAAREEWLKSLKTMRRLSDNTLIAYERDTRQFLQFLTGHLGEPPSLKEIGNLRIADLRS 76 Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + + + L +R L + ++ V ++ P++ +P T Sbjct: 77 FLANRRND--GAGARTLGRGLAGVRSLLRHLEKRGLVNAAGASAMRAPRQPKSLPKPLTA 134 Query: 177 EDMQ-------QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQ 227 +D + Q ++ L GLR S++ L + T Sbjct: 135 DDARRVVSADGQMAEEPWIAARNAAVLTLLYGCGLRISEALGLSGDALSDPSARSMTITG 194 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKA 280 K V L K +A F ++A + Sbjct: 195 KGSKTRLVPLLPAVHKAVAQYRALCPFDLSAGQPLFRGAKGGPLHAAIIQREMQKLRAGL 254 Query: 281 GVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 G+ + H +R AT G + G ++ + YT G D RL Sbjct: 255 GLPDSATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYT-GVDTQRL 306 >gi|58337280|ref|YP_193865.1| integrase-recombinase [Lactobacillus acidophilus NCFM] gi|227903866|ref|ZP_04021671.1| integrase-recombinase [Lactobacillus acidophilus ATCC 4796] gi|58254597|gb|AAV42834.1| integrase-recombinase [Lactobacillus acidophilus NCFM] gi|227868257|gb|EEJ75678.1| integrase-recombinase [Lactobacillus acidophilus ATCC 4796] Length = 302 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 38/276 (13%), Positives = 104/276 (37%), Gaps = 26/276 (9%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFD-YRKITTKHIR---SGVESR 126 L Y ++ + + S+++ ++ ++++G ++ ++ IT + I+ + R Sbjct: 10 LFISYLQNE--RHYSSKTIASYKTDLLEVEKFLKENGGYNGWKNITERDIQLYLQHLSDR 67 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 K SS ++ ++S+ +++ R++ V ++P + + + + + + +++Q Sbjct: 68 KLARSSQLRQMSSLHSFYRFLTRRKIVQVDPTQQITLRRGEKKLPEFFYEPEIKQVFDSL 127 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGF 241 + F+ +G+R S+ + + + +I K V D Sbjct: 128 SGDKPLTVRNLALFQLFYATGMRVSEVSSLTLNQIDLTMQTILVHGKGKKDRYVAFDDKT 187 Query: 242 MKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289 + L + F++N + ++ + +AG+ H + Sbjct: 188 KRSLTKYLEIARPKLLKNEDEPHVFLSNLGKPISNRGIQYVMQKTFNQAGISGKVHPHEL 247 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 R AT + GA + G ++ + YT Sbjct: 248 RHTFATAMINNGADLRSVQELLGHSSLSATQIYTHV 283 >gi|325982877|ref|YP_004295279.1| tyrosine recombinase XerC [Nitrosomonas sp. AL212] gi|325532396|gb|ADZ27117.1| tyrosine recombinase XerC [Nitrosomonas sp. AL212] Length = 297 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 39/274 (14%), Positives = 90/274 (32%), Gaps = 19/274 (6%) Query: 77 EYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SS 132 Y + L+ + S+ ++ G D ++ + +IR + S Sbjct: 11 AYIDHLAYERRLSPLTCKSYARDIRVLLEHLGTDDLAQVQSPNIRQAIAQLHGKGLGGRS 70 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG--- 189 + L++ + + +R+ NPC +V PK + + ++ + F E Sbjct: 71 LARMLSAWCGFYNFLIRKHGFQHNPCYAVRVPKSPQKLPHALSPDEATRLLQFPVENILL 130 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK---------TQKTGTIITVELPDG 240 ++ FE SGLR ++ + + +I+ G + Sbjct: 131 ARDSAMFELFYSSGLRLAELTHLRPEDVHFAEGTIRVLGKGGKARIVPVGEYALHSITTW 190 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298 L + F++ ++ + K++A + G+++ H +R A+ Sbjct: 191 LALRLQIIKPNVTALFLSRRGDAISMRAIAYRLKSRARQQGLHQNVHPHVLRHSFASHVL 250 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 + + G + + YT D L Sbjct: 251 QSSGDLRAVQEMLGHAHITSTQVYTH-LDFQHLA 283 >gi|221642264|ref|YP_002533351.1| integrase:recombinase [Bacillus cereus Q1] gi|229052846|ref|ZP_04195288.1| Site-specific recombinase, phage integrase [Bacillus cereus AH676] gi|229199805|ref|ZP_04326410.1| Site-specific recombinase, phage integrase [Bacillus cereus m1293] gi|221243199|gb|ACM15908.1| integrase:recombinase [Bacillus cereus Q1] gi|228583670|gb|EEK41883.1| Site-specific recombinase, phage integrase [Bacillus cereus m1293] gi|228721504|gb|EEL73006.1| Site-specific recombinase, phage integrase [Bacillus cereus AH676] Length = 322 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 40/269 (14%), Positives = 82/269 (30%), Gaps = 22/269 (8%) Query: 83 HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTS 139 + + F +R+ IT H++ + + P++ +++ Sbjct: 38 RAEGFRKRTIDDYSKLFRYFMRELNIEKVEIITAAHVQMYINKLLNRELAPATVNIRISA 97 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPRLA 195 ++ +FK Q Y+ NP + + + I +++ G + A Sbjct: 98 LKSVFKRLNEQGYIKSNPAVDFVKLRTDEAPIFTLNHNQIKRIFRVVDKTTYAGYRDYCA 157 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPDGFMKLLAMTPIG 251 +L+ GLR ++ + + + +I K V + + L M Sbjct: 158 MLLMLHCGLRVNEVNQLEANDIDFDNLTIMLAGAKNKNRKTRAVPMTKKVAEELRMLIDE 217 Query: 252 KETFFINNDKQKMNATQ-------FSIWFKAKATKAGVNK----SAHGVRKFSATISADA 300 +F + T AG+ K S H +R AT Sbjct: 218 SREYFEGVTNVFLTQEGKVIDNDLLRKRMYRYGTLAGLLKECRPSPHSLRHTFATNFLRN 277 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329 G + + LM G + Y + D Sbjct: 278 GGSVNALMRIMGHADITTTMRYVRLNDEA 306 >gi|298245891|ref|ZP_06969697.1| integrase family protein [Ktedonobacter racemifer DSM 44963] gi|297553372|gb|EFH87237.1| integrase family protein [Ktedonobacter racemifer DSM 44963] Length = 384 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 44/340 (12%), Positives = 106/340 (31%), Gaps = 40/340 (11%) Query: 20 KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79 + + G+R + + + I AL + R+ L + ++ Sbjct: 22 RWVAEVTIATGKRKKFYFKTKQEAIKKKNEALRELEMGILATGTRRR----LGEYLEDWL 77 Query: 80 KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS---AIQF 136 ++ H G L V + ++++ +I GD +K+T +H+++ + + S Sbjct: 78 ENVHKGRLRVGTYVNYKKLIKYVIADLGDIWLQKLTPQHVQTFYSKKLNEGLSSKLINNI 137 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196 + V + AVR N C V P+ + + P + E + F + + + Sbjct: 138 HGVLHVALENAVRWGLAPKNVCDLVTPPRIVSREVVPLSVEQARWFVDRVKKH-RLEVLL 196 Query: 197 EFLLYSGLRCSDSCRAGVQHLQ-----------------NNIFSIKTQKTGTIITVELPD 239 + +G+R + + + + + + LP Sbjct: 197 VTAVVTGMRRGELLALRWPDIDFERSRLLVLHSVDFIAGHGYVEGQPKTVAGRRVISLPS 256 Query: 240 GFMKLLAMTPIGKETFFINNDKQKM-------------NATQFSIWFKAKATKAGV-NKS 285 + +L ++ + + + F+ +AG+ Sbjct: 257 FLVDMLKQHRTLQQDARKSAKDWQDRDLVFPNLKGGYLHPAHMGEKFRKILAEAGLPPIH 316 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTK 324 H +R +A+I G + G + Y+ Sbjct: 317 FHDLRHSAASILLCMGVNIKVIQELLGHSDISITLRTYSH 356 >gi|251772576|gb|EES53141.1| putative phage integrase [Leptospirillum ferrodiazotrophum] Length = 367 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 51/337 (15%), Positives = 104/337 (30%), Gaps = 21/337 (6%) Query: 1 MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60 M + + G R G+RIR ++ Y T + R Sbjct: 1 MARKGGKDRGIREIPPGSGVWWVDLRH-EGKRIRRKVGPKTAAKAVYERLKTEAREGRLV 59 Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 ++ T++ +++E + ++ + Y I K G+ +T +R Sbjct: 60 PREKKRIFPTVREVVTE-----RASRFSGRQGVNEKRYASWWIEKIGEKRTNDLTPSDLR 114 Query: 121 SG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 +SR +P + F +R A+R + +P +R T+ Sbjct: 115 KILNEARDSRDLSPQTINHFFGHLRAALNEALRDGKIDHSPMQGFSLLPTPRGRLRFLTE 174 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIIT 234 + + + + F + +GLR + + +I K G Sbjct: 175 GEELRLREVMTPA--DFRLVRFAILTGLRREEQFSLTWSDIDLQNRVLTIPRSKHGGTRH 232 Query: 235 VELPDGFMKLLAMTPIGKETF--FINNDKQKMNATQFSIWFKA----KATKAGVNKS-AH 287 V L D +++L + + + +++ KAG+ H Sbjct: 233 VPLSDEAVEILKAIRTERRVVSAWCFPSQNPATHIDPQNFYRRVYLPALEKAGIKDVIWH 292 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R A+ AG + G KT+ Y+ Sbjct: 293 TLRHTCASRLVMAGVDIRTVQEILGHKTLAMTTRYSH 329 >gi|284032633|ref|YP_003382564.1| integrase family protein [Kribbella flavida DSM 17836] gi|283811926|gb|ADB33765.1| integrase family protein [Kribbella flavida DSM 17836] Length = 312 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 45/308 (14%), Positives = 97/308 (31%), Gaps = 27/308 (8%) Query: 57 KREYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRK---SGDFDYR 112 + +++ P L+++Y + L+ +S ++ +I G D Sbjct: 2 APDDVSADPSVPEDFAALLADYERHLTAERGLSEHSVRAYMGDVADLIDHVTRLGHDDLS 61 Query: 113 KITTKHIRSGVES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169 + + +RS + S+ + T+ RV WA R +A +P + PK Sbjct: 62 ALDIRGLRSWLAKQQSLGKARSTMARRATAARVFTAWAQRTGRIATDPGALLASPKAHKT 121 Query: 170 GI--------RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221 R G + E L +G+R + C V + + Sbjct: 122 LPGVLGQADTRAVLDAAAVAADDGSPVGLRDLTIMELLYATGIRVGELCALDVDEVDRSR 181 Query: 222 FSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFINNDKQ---------KMNATQFSI 271 ++ +V + L + + +++ Sbjct: 182 RVVRVFGKGRKERSVPYGVPAAEALETWLAVRPRLVRDGSGPALFLGARGGRIDQRTVRR 241 Query: 272 WFKAKATKAG-VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRI 329 A+ + S HG+R +AT + GA + G ++ + YT ++R+ Sbjct: 242 VVHARIGAVEAPDLSPHGLRHTAATHLLEGGADLRSVQELLGHASLATTQVYTHVSSERL 301 Query: 330 RLGIKNSR 337 R + + Sbjct: 302 RSAYEQAH 309 >gi|254417725|ref|ZP_05031449.1| site-specific recombinase, phage integrase family protein [Brevundimonas sp. BAL3] gi|196183902|gb|EDX78878.1| site-specific recombinase, phage integrase family protein [Brevundimonas sp. BAL3] Length = 309 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 41/296 (13%), Positives = 81/296 (27%), Gaps = 32/296 (10%) Query: 67 KPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD--------YRKITTK 117 T + + + L+ + ++ + +T Sbjct: 4 VELTAADALLAWLEHLAHERRLSPRTLEAYGHIGRLYVAFLERHRGEALSLKGLGTVTAA 63 Query: 118 HIRSGVESRKHT-----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 +R+ + R+ S Q L+++R + R+ V P+ K R Sbjct: 64 EVRAHMAERRSGDHPLAARSLSQSLSAIRGFHAFLDRRLDTPAPQLALVRGPRIKPSLPR 123 Query: 173 PWTKED--------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 P T++ + E ++ R L GLR S+ Sbjct: 124 PVTEDQARGLLAEPNADPDAEPWEAARDRAVLTLLYGCGLRISEGLSLTRADAPLGETLR 183 Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKA 277 K V + + + F ++ + Sbjct: 184 VLGKGSKTRIVPVLPAVRAAVDAYLALQPFPLQPSDALFRARRGGPLSPRHVQASVQRLR 243 Query: 278 TKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 + G+ + + H +R AT AGA + G ++ + YT G D RL Sbjct: 244 GRLGLPERTTPHALRHSFATHLLGAGADLRSIQELLGHASLSTTQKYT-GVDAERL 298 >gi|111017946|ref|YP_700918.1| site-specific tyrosine recombinase XerD [Rhodococcus jostii RHA1] gi|110817476|gb|ABG92760.1| tyrosine recombinase [Rhodococcus jostii RHA1] Length = 308 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 43/283 (15%), Positives = 83/283 (29%), Gaps = 34/283 (12%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES-RKHTPSS 132 + Y A N+ S+ ++ + D + I + + Sbjct: 7 VDSYLDHLAVERGAARNTLGSYRRDLERYTQFLADRELTDIDRIREQDVSDFVIALRSGD 66 Query: 133 AIQFL------------TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + L ++R ++A + A++ V P + ++ Sbjct: 67 PNRELPPLAASSAARALIAVRGFHRFAAAEGMTAVDVARDVRPPSPAKRLPKSLPVNEVL 126 Query: 181 QFKSFW--------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGT 231 + R E L +G R S++ V + S+ K G Sbjct: 127 ALLEAVGGSGPADGPRAVRDRALLELLYSTGARISEAVGLDVDDVDTETRSVLLRGKGGK 186 Query: 232 IITVELPDGFMKLLAMTPIGKETF---------FINNDKQKMNATQFSIWFKAKATKAGV 282 V + ++ L I F+N +++ +A A AG+ Sbjct: 187 QRVVPVGRPAVESLDAYLIRGRPALASRGTPALFLNVRGGRLSRQSAWKVLQAAADAAGI 246 Query: 283 N--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + S H +R AT D GA + G +V + YT Sbjct: 247 SSAVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYT 289 >gi|15966799|ref|NP_387152.1| site-specific tyrosine recombinase XerC [Sinorhizobium meliloti 1021] gi|307301627|ref|ZP_07581386.1| integrase family protein [Sinorhizobium meliloti BL225C] gi|15076071|emb|CAC47625.1| Probable integrase/recombinase [Sinorhizobium meliloti 1021] gi|306903325|gb|EFN33914.1| integrase family protein [Sinorhizobium meliloti BL225C] Length = 330 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 38/285 (13%), Positives = 78/285 (27%), Gaps = 30/285 (10%) Query: 76 SEYRKS-AHWGSLAVNSRISFESYFDQIIRKS-GDF-------DYRKITTKHIRSGVESR 126 + S A L+ + ++E Q + G D + +R + R Sbjct: 36 RRWLASLAEERRLSEKTVDAYERDTRQFLTFLTGHLAGPPRLSDICALRPADLRGFLAQR 95 Query: 127 KHTPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + + A L +R ++ R +V PK+ + T + + Sbjct: 96 RKGGAGARTLGRGLAGLRSFLRYLERNGLANAAGAGAVRSPKQPKSLPKALTDREALKVV 155 Query: 184 SF-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITV 235 + ++ L GLR +++ + S++ G V Sbjct: 156 TADAQLAEEPWIAARNAAVLTLLYGCGLRIAEALDLTPADFSGPVTSLRVTGKGGKTRIV 215 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-------FSIWFKAKATKAGVN--KSA 286 + + + + A + G+ + Sbjct: 216 PMIAAAAEAVETYRKLCPYHIEPEEPIFRGARGAKLQPAIIQREMQKLRAALGLPDSATP 275 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 H +R AT G + G ++ + YT G D RL Sbjct: 276 HALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYT-GVDSARL 319 >gi|256059893|ref|ZP_05450079.1| site-specific tyrosine recombinase XerC [Brucella neotomae 5K33] Length = 309 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 46/293 (15%), Positives = 86/293 (29%), Gaps = 35/293 (11%) Query: 71 LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS-------------GDFDYRKITT 116 L E+ KS L+ N+ I++E Q ++ G+ + + Sbjct: 9 LAAAREEWLKSLKTMRRLSDNTLIAYERDTRQFLQFLTGHLGEPPSLKEIGNLRIADLRS 68 Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + + + L +R L + ++ V ++ P++ +P T Sbjct: 69 FLANRRND--GAGARTLGRGLAGVRSLLRHLEKRGLVNAAGASAMRAPRQPKSLPKPLTA 126 Query: 177 EDMQ-------QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQ 227 +D + Q ++ L GLR S++ L + T Sbjct: 127 DDARRVVSADGQMAEEPWIAARNAAVLTLLYGCGLRISEALGLSGDALSDPSARSMTITG 186 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKA 280 K V L K +A F ++A + Sbjct: 187 KGSKTRLVPLLPAVHKAVAQYRALCPFDLSAGQPLFRGAKGGPLHAAIIQREMQKLRAGL 246 Query: 281 GVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 G+ + H +R AT G + G ++ + YT G D RL Sbjct: 247 GLPDSATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYT-GVDTQRL 298 >gi|319900063|ref|YP_004159791.1| integrase family protein [Bacteroides helcogenes P 36-108] gi|319415094|gb|ADV42205.1| integrase family protein [Bacteroides helcogenes P 36-108] Length = 376 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 54/306 (17%), Positives = 102/306 (33%), Gaps = 25/306 (8%) Query: 35 LPYPHESTFIPAY--MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSR 92 L + AY SAL + PK+ SP P Y ++ + ++ Sbjct: 61 LSGFFDRHVETAYINYSALKNTLPKKNGKTSPAIPPG--------YAETLRQLRYSEHTV 112 Query: 93 ISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAV 148 ++ +YF + + + R I + I + + ++R + + S++ F Sbjct: 113 RAYTAYFREFQQYFAGRNLRYIRPEEINAYIVHLIDTRGISSCQQNLRINSIKFYF---- 168 Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208 + C V+R KR+ +KE+++ + F L +GLR S+ Sbjct: 169 EKVLGQERKCYEVKRAKRERTLPDVLSKEEIKSILDATGPDIRLFCMFSLLYSAGLRISE 228 Query: 209 SCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMT---PIGKETFFINNDKQK 263 + + ++ K L ++ L +E F + Sbjct: 229 LLDLKPHDINVSRSLIRVRQGKGRKDRYTLLSKPLVRKLTEYTKLYKPQEWLFERYKGEP 288 Query: 264 MNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321 + S K A +AG+ K H +R AT + G + G + E Sbjct: 289 FTESIVSKKLKEAAKEAGITKRVYPHLLRHSFATHLIEQGTDLKIVKELLGHNQLKTTEM 348 Query: 322 YTKGAD 327 Y AD Sbjct: 349 YVHIAD 354 >gi|323344611|ref|ZP_08084835.1| tyrosine recombinase XerC [Prevotella oralis ATCC 33269] gi|323093881|gb|EFZ36458.1| tyrosine recombinase XerC [Prevotella oralis ATCC 33269] Length = 293 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 44/275 (16%), Positives = 90/275 (32%), Gaps = 24/275 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRKHT 129 I E+ + + + + +++ + + + IR +ES Sbjct: 3 IEEFLDYLRYERNRSAQTVKNYDEDLKAFESYFKKINKELSWESVDSDVIRGWMESMMDK 62 Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ-----Q 181 +S + L+++R L+++A+ + YV +P V PKR + + +M Sbjct: 63 GNIATSINRRLSALRSLYRFALSKGYVDSDPAYGVVGPKRAKPLPQFLKEREMDELLGLT 122 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELPDG 240 + + +G+R S+ + N + K + D Sbjct: 123 VWKDGFKNVRAYTILIMFYETGMRLSELVGLNDSSVDFVNRQFKVSGKRNKQRLIPFGDE 182 Query: 241 FMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGVR 290 L M + F+ ++ ++MN Q K +K K+ H +R Sbjct: 183 LDTSLRMYLELRNESVGRKSDALFVTSEGKRMNQDQVRYEVKKNLSKVCTLKKKTPHVLR 242 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 AT + A + G +V E YT Sbjct: 243 HTFATAMLNHDANIESVRKLLGHASVGTTEVYTHT 277 >gi|326693050|ref|ZP_08230055.1| tyrosine recombinase XerC [Leuconostoc argentinum KCTC 3773] Length = 302 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 32/280 (11%), Positives = 86/280 (30%), Gaps = 28/280 (10%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-------FDYRKITTKHIRSGVE 124 L +Y ++ + + ++ + + + + + + + + Sbjct: 6 AQLYQDYLQAE--RQYSDLTVKAYLTDIEAFTTFLAENGGFTTYRAVQTLDVRVYLNELY 63 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-----WTKEDM 179 R+ ++ + ++S+R+ F++ + ++V+ NP +V K ++ T Sbjct: 64 ERQLARTTIARKISSLRMFFQFMLANQFVSDNPFENVALRKHQSHLPEFFYESELTTLFE 123 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN------------NIFSIKTQ 227 + + EFL +G R ++ + L + Sbjct: 124 VAYAEDEPLWQRNAALLEFLYATGARVAEIANLTITQLDFAQRLVLIHGKGNKDRYVPFG 183 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-- 285 + L + F+N+ + + A + K+ + + Sbjct: 184 HFAAQAMTQYLHELRPQLVAKQAPHDRVFVNHRGEPITAAGITYILNELMKKSALTGTIH 243 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 H +R AT + GA + G + + YT Sbjct: 244 PHMLRHTFATHLLNHGADMRTVQELLGHVNLSTTQMYTHV 283 >gi|320528392|ref|ZP_08029554.1| phage integrase, SAM-like domain protein [Solobacterium moorei F0204] gi|320131306|gb|EFW23874.1| phage integrase, SAM-like domain protein [Solobacterium moorei F0204] Length = 308 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 42/296 (14%), Positives = 99/296 (33%), Gaps = 24/296 (8%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESRK- 127 I + + + S+ + Q + + G + +KI + I + ++ Sbjct: 5 DAFIEYFTNIKINEGKSKRTVSSYTNDLKQYMQFLDEQGITNTKKIKPELIEEFIANQSE 64 Query: 128 -HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 +S + ++R ++ + +P L+++ K T +++++ + Sbjct: 65 YKASTSLARMTAAIRSFHQFMT-MMHDEPDPSLNLQVHKGPKTLPIYCTVDEIKRLMQSF 123 Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241 + + E + GLR S+ C + + + I+ K V +P G Sbjct: 124 DDTNIQDNLDHTLLETIYSCGLRVSEICNLTINRVDLDTGRIRVLGKGDKERIVPIPKGS 183 Query: 242 MKLLAMT---------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 + LL FF+N +K+ + + + K + K + H +R Sbjct: 184 IPLLKQYISITRVNLIQKKTNIFFLNRFGRKITSKYVELLLQRKCVELDFKKHITPHKLR 243 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346 AT GA + G + E YT + + + + + + Sbjct: 244 HSYATHMLQGGADLRSIQEILGHSNIQTTEIYTHV--QNKQLFDAYNKFNPLASQN 297 >gi|49146367|ref|YP_025475.1| putative site-specific recombinase [Caedibacter taeniospiralis] gi|40458335|gb|AAR87083.1| putative site-specific recombinase [Caedibacter taeniospiralis] Length = 282 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 36/271 (13%), Positives = 79/271 (29%), Gaps = 20/271 (7%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESR- 126 I + K + + I++ + + D F KITT +R Sbjct: 4 DAIERFIKYLESTEKSPATLINYRRDLNAFAKWFEDNNGDAFLPAKITTTDLRQYKSMLI 63 Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 P + + + S+R W + L + K K Sbjct: 64 DHPFKPKTINRRIGSLRSFINWLWDIGEINNKFPL-PKLVKENQPTPMWLDKNQQHALMR 122 Query: 185 FWSEGSQPRLAFEFLLY--SGLRCSDSCRAGV--------QHLQNNIFSIKTQKTGTIIT 234 R A ++ +G+R + + + S + + Sbjct: 123 HLERYGNERDASIISIFMNTGMRVQEFVNLKWIDVTLSDKKGIIMIRHSKANKYREIPLN 182 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293 + F+KL T G + + + + + + K + ++ S H +R Sbjct: 183 KDARYAFVKLGFKTHAGSDEYVLQGQRGNITTRGIQMMIKRRVAYTDLDYLSPHMLRHTF 242 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324 +AG + ++ G +T++ + Y Sbjct: 243 CKNLVNAGVSLEKVAVLAGHETLETTKIYCH 273 >gi|254511455|ref|ZP_05123522.1| tyrosine recombinase XerD [Rhodobacteraceae bacterium KLH11] gi|221535166|gb|EEE38154.1| tyrosine recombinase XerD [Rhodobacteraceae bacterium KLH11] Length = 318 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 45/300 (15%), Positives = 94/300 (31%), Gaps = 34/300 (11%) Query: 66 KKPTTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSG 122 P T IS + ++ A N+ +++ + + I Sbjct: 2 AAPATQDLWISTFLEAQAAELGAANNTLLAYGRDLKDFADWLMRRKSGFAEADRDQIEGY 61 Query: 123 ---VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 +++ + ++ + L++++ L+++A + + NP + ++ P R + ++ Sbjct: 62 LIDCDAQGLSRATRARRLSAIKQLYRFAFEEGWREANPAIQIKGPGRAKRLPKTLDVPEV 121 Query: 180 QQFKSFWSEGSQ-------PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGT 231 + + E L +G+R ++ V + + + K G Sbjct: 122 DRLLEAARRTGRSAADRIRNTCLMELLYATGMRVTELVSLPVSSARGDPRMLLVLGKGGK 181 Query: 232 IITVELPDGFMKLLAMTPIGKET----------------FFINNDKQKMNATQFSIWFKA 275 V L LA ++ F + +F + K Sbjct: 182 ERMVPLSPPARDALAEWLKQRDDAEERTVAKGGQASRFLFPSRGKSGYLTRHRFFLLVKE 241 Query: 276 KATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 A + GV + H +R AT GA + G V E YT D RL Sbjct: 242 LAVEGGVSPAKVTPHTLRHAFATHLLANGADLRSIQTLLGHADVATTEIYTHVLD-ERLA 300 >gi|84498372|ref|ZP_00997169.1| tyrosine recombinase [Janibacter sp. HTCC2649] gi|84381872|gb|EAP97755.1| tyrosine recombinase [Janibacter sp. HTCC2649] Length = 325 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 45/307 (14%), Positives = 91/307 (29%), Gaps = 39/307 (12%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-------GDFD------YRKITTKH 118 +I + + S + ++ ++ + + G + I Sbjct: 19 AVIDAFERHLRLERSRSPHTVRAYLADLRDFLAHVDGEGANEGGTPRAPQTALQDIRLAD 78 Query: 119 IRSGV---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 +R+ + + SS + S+R F WA RQ +V ++P L + PKR Sbjct: 79 LRAWLGVLAAAGAARSSVARRSASLRTFFGWATRQGHVDVDPSLRLVAPKRHRTLPPVLA 138 Query: 176 KEDMQQFKS--------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227 K+D + R E L +G+R + + + + ++ Sbjct: 139 KDDAAGLLDVAAVAADDNDPVHVRNRAVLELLYATGVRVGELTGLDIDDVDFHSNVVRVI 198 Query: 228 KT-GTIITVELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAK 276 V LA F+ ++++ Q Sbjct: 199 GKGDKERRVPFGGPARSALAKWLDVGRPRLVVDGSGPGLFLGQRGRRIDPRQVRTLVHDM 258 Query: 277 ATKAG--VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334 T + HG+R +AT + GA + G ++ + YT RL Sbjct: 259 LTHVPDAPDLGPHGLRHSAATHLLEGGADLRMVQELLGHASLATTQIYTH-VSIERLAAS 317 Query: 335 NSRRISS 341 ++ Sbjct: 318 YAQAHPR 324 >gi|253583755|ref|ZP_04860953.1| integrase/recombinase [Fusobacterium varium ATCC 27725] gi|251834327|gb|EES62890.1| integrase/recombinase [Fusobacterium varium ATCC 27725] Length = 294 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 47/272 (17%), Positives = 94/272 (34%), Gaps = 24/272 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVESRKH- 128 I ++ A + + ++N+ S + Q+ + D KIT +R + + Sbjct: 8 IKDFLYFAEFGENKSLNTIKSLKKDLSQLSEYLKNIEKIEDISKITPVMLRGFIIELQKN 67 Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 S + L+S+R FK+ ++ + NP + P + E T E++ + + Sbjct: 68 EVGKRSINRKLSSLRSFFKYLIKNNLIKNNPIEIINSPSFEAEKPDILTLEEINKLREVI 127 Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242 + G + RL E L SG+ ++ G Q + ++ T TV Sbjct: 128 NIDNTNGLRDRLILELLYSSGITSTEMLGIGEQVFDLDNRTLLVSNGKTNRTVFFSQRTR 187 Query: 243 KLLAMTPIGKETFFINNDK----------QKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 + K+ + +++ A KAG+ + S + R Sbjct: 188 EYFKRYIEAKKEKYKEKYNSSILFVNGSGNRLSDRSLRRIVDRYAAKAGITREISPYSFR 247 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETY 322 A G + L G T++ + Y Sbjct: 248 HTFAVHLLAKGMGLNFLQELMGHVTIESTKIY 279 >gi|126462249|ref|YP_001043363.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029] gi|126103913|gb|ABN76591.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029] Length = 311 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 51/289 (17%), Positives = 97/289 (33%), Gaps = 33/289 (11%) Query: 72 KWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVES 125 + IS + ++ A N+R+++ G +T + + E+ Sbjct: 7 ERWISAFLEAQAAELDAARNTRLAYGRDLKDYATWLGRRSEDFLTATRDTVEAYLTFCEA 66 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + + ++ + L+S+R L+++A + + A NP + + P R + E++ Sbjct: 67 QGLSSATRARRLSSIRQLYRFAHEEGWRADNPAIRISGPGRSKRLPKTLEIEEVDWLLEA 126 Query: 186 WSEGSQ-------PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVEL 237 + + R E L +G+R S+ V + + I K G V L Sbjct: 127 ARDKGRRAEDQIRNRCLLELLYATGMRVSEMVGLPVAAARGSPRMILVRGKGGKERMVPL 186 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQ----------------KMNATQFSIWFKAKATKAG 281 + LA ++ K + F + K A AG Sbjct: 187 SPPACEALADWLRARDAAEAQGQKAGRPASRFLFPGSGAAGHLTREYFYVLVKQIAVLAG 246 Query: 282 VN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 V+ + H +R AT GA + G + E YT D Sbjct: 247 VDPAKVTPHTLRHAFATHLLAGGADLRVIQTLLGHADLSTTEIYTHVLD 295 >gi|227484989|ref|ZP_03915305.1| possible tyrosine recombinase XerC [Anaerococcus lactolyticus ATCC 51172] gi|227236986|gb|EEI87001.1| possible tyrosine recombinase XerC [Anaerococcus lactolyticus ATCC 51172] Length = 329 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 43/306 (14%), Positives = 95/306 (31%), Gaps = 52/306 (16%) Query: 74 LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS--------------GDFDYRKIT--- 115 L+++Y L+ ++ + + I DFDY+KI Sbjct: 9 LLTDYLNYLKSIKGLSESTIKEYAYDLETFIEYQIVRKIYNNNKKDYENDFDYKKINFFV 68 Query: 116 -------------TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSV 161 + + + ++ + +++++ +K+ E + N + Sbjct: 69 DNIFFEKITIQDFYAFLSYLDNDKNDSATTRSRKISAIKSFYKYMYSEIEVINTNIADKL 128 Query: 162 ERPKRKTEGIRPWTK------EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215 PK T + + ++ L +G+R S+ + Sbjct: 129 TNPKISQRQPVYLTLSETERLIETISKEKNTFLKARDLAIVFTFLTTGMRLSELISIDLS 188 Query: 216 HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF---------FINNDKQKMNA 266 + + F+I + TV L L+ + + + FI+ K +++ Sbjct: 189 DVNKDSFNIIGKGN-KERTVYLTKNCQDLINNYIVIRSEYLKDDTVNALFISTRKNRISN 247 Query: 267 TQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETY 322 + KAG + S H +R +AT+ G L G +V + Y Sbjct: 248 RAVQSTIEKYLAKAGFDTSVYSTHKLRHTAATLMYKYGNVDIRALKDILGHASVSTTQIY 307 Query: 323 TKGADR 328 T + Sbjct: 308 THLDNE 313 >gi|83944764|ref|ZP_00957130.1| integrase/recombinase XerC, putative [Oceanicaulis alexandrii HTCC2633] gi|83851546|gb|EAP89401.1| integrase/recombinase XerC, putative [Oceanicaulis alexandrii HTCC2633] Length = 313 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 35/293 (11%), Positives = 84/293 (28%), Gaps = 28/293 (9%) Query: 72 KWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS-GD-------FDYRKITTKHIRSG 122 +S + L+ + +++ + G +++ R+ Sbjct: 13 DKALSAFLSHLEGERRLSPRTVEAYDRDLSGLFEFLTGHLGGRLTLKALSDLSSADWRAW 72 Query: 123 VESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + R+ P + + L++ R F + R+ + VE PK + RP ++ Sbjct: 73 LADRRRDGVGPRTLQRGLSAARTFFSYGRRRWGLDNPALGLVESPKAQRRQPRPVSESAA 132 Query: 180 QQFKSF-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 + G++ L GLR S++ + K G Sbjct: 133 KSLLKEAETGAKEPWIGARDAAVLSLLYGCGLRISEALALTGRDHPLPEVLRVAGKGGKT 192 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGVNKS 285 V + + ++ ++ + A + ++ G+ + Sbjct: 193 RIVPVLPAVRQAVSAYVDACPYQIERDEPLFRASRGGPLQARAMQSAMQTMRSRLGLPAT 252 Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 H +R AT G + G ++ + Y + I + Sbjct: 253 ATPHALRHAFATHLLAHGGDLRAIQDLLGHASLSTTQIYADIEQSRLIAIHAA 305 >gi|68536254|ref|YP_250959.1| integrase/recombinase [Corynebacterium jeikeium K411] gi|260578954|ref|ZP_05846857.1| tyrosine recombinase XerC [Corynebacterium jeikeium ATCC 43734] gi|68263853|emb|CAI37341.1| integrase/recombinase [Corynebacterium jeikeium K411] gi|258602928|gb|EEW16202.1| tyrosine recombinase XerC [Corynebacterium jeikeium ATCC 43734] Length = 301 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 36/279 (12%), Positives = 83/279 (29%), Gaps = 19/279 (6%) Query: 74 LISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITT-KHIRSGVESRKHTPS 131 + +Y + + N+ ++ D + + + + + + + Sbjct: 15 ALDDYEQHLRHVVGRSENTIRAYRQNLDSALEGLERIEEFDLDRARDVLGWAVDNGASRA 74 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS------- 184 S + +SMR + + +V NP +++ PK + R + + Sbjct: 75 SLSRLASSMRGFGAFLAHRGFVQANPVAALKAPKPQRTLPRVLRSDQASDMLNGLQPEGD 134 Query: 185 -FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 + E L +G+R S+ V + + ++ V + Sbjct: 135 AATPSAIRDWAMVELLYATGIRVSELTGCDVNDVDFSNRLLRVTGKGNKTRVVPFGGTVV 194 Query: 243 KLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSA 294 L +E F+ ++++ Q G S HG+R +A Sbjct: 195 AALEKWLEVREDMAKETPALFVGVRGKRIDPRQVRTVVNRVTQAGPGPRLSPHGLRHSAA 254 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 T + GA + G + + YT + Sbjct: 255 TAILEGGADLRVVQELLGHANMSTTQIYTHVGTERLKAV 293 >gi|316985480|gb|EFV64427.1| tyrosine recombinase XerC [Neisseria meningitidis H44/76] Length = 329 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 40/289 (13%), Positives = 87/289 (30%), Gaps = 26/289 (8%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD---YRKITTKHIRSGVESRK 127 L + Y ++ + ++ ++ +++ + T + Sbjct: 34 LAAYLDAYLENIVREGKSEHTVAAYRRDLQELLALLEEMPSANPSNCTRGDFVQALRRLS 93 Query: 128 HTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + + L+S R W V++ + +P ++ PK+ + +E + + Sbjct: 94 GRGLGERTLARKLSSWRQYCVWLVKRGLMHADPTADIKPPKQPERVPKALPQEWLNRMLD 153 Query: 185 FWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELP 238 +G + FE + SGLR S+ + + + K V L Sbjct: 154 LPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVIGKGRKQRQVPLV 213 Query: 239 DGFMKLLAMTPIGKETFFIN---NDKQKMNATQFSIWFKAKATKA-----GVNKSAHGVR 290 ++ L ++T + K A A G + S H +R Sbjct: 214 GKSVEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHVSPHMMR 273 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 A A + G ++ + YTK L + R+ Sbjct: 274 HSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK------LDFDHIARL 316 >gi|49084748|gb|AAT51227.1| PA5280 [synthetic construct] Length = 304 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 38/278 (13%), Positives = 91/278 (32%), Gaps = 21/278 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVESRKHTP 130 + + + ++ ++ + +I+ K+G D+ + T+ +R+ V Sbjct: 5 LDAFLEHLRSERQVSAHTLDGYRRDLLKILALAEKAGLSDWNALDTRSLRTFVARLHQQG 64 Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S + L++ R L+++ +R+ +P + PK + R + Q Sbjct: 65 QSSRSLARLLSATRGLYQYLLREGRCRHDPANGLSAPKSPRKLPRTLDADRALQLLDGAV 124 Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVELPDGFM 242 E + + E SGLR S+ ++ L ++ + G + + Sbjct: 125 EDDFIARRDQALLELFYSSGLRLSELVGLDLEWLDLKEGLVRVRGKGNRVRELPVGKAAR 184 Query: 243 KLLAMTPIGKET-------FFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSA 294 + L + FI +++ + + + G H +R A Sbjct: 185 QALEAWLPLRTQAAPEDGAVFIGRSGKRLTPRAIQLRVRQAGVRELGQRLHPHMLRHSFA 244 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 + ++ + G + + YT D L Sbjct: 245 SHLLESSGDLRAVQELLGHADIATTQIYTH-LDFQHLA 281 >gi|168204762|ref|ZP_02630767.1| prophage LambdaCh01, site-specific recombinase, phage integrase family [Clostridium perfringens E str. JGS1987] gi|170663693|gb|EDT16376.1| prophage LambdaCh01, site-specific recombinase, phage integrase family [Clostridium perfringens E str. JGS1987] Length = 386 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 56/381 (14%), Positives = 109/381 (28%), Gaps = 54/381 (14%) Query: 15 RTRHGKIIYYFR--KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 R R K Y + +G + R T A + T LK Sbjct: 6 RKRGSKWYYSYESYDSNGNKKRYERVGGKTKKEAQQKLNEALYKR--DCGYVEVDNTILK 63 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVE---SRKH 128 + + K + N+ +ES I G+ + + HI S + + Sbjct: 64 DYLENWLKQYIKPTRKENTYYRYESIIKNSINPIIGNVQLKNLKAIHIESMLNSNKEKNL 123 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 T ++ T + AV+ + + N C V+RPKR+ + E+ + S+ Sbjct: 124 TNTTLQNIYTVLNAALNRAVKLQLINNNVCKFVDRPKRERFIAETLSIEEFNYILNSLSD 183 Query: 189 GSQPRLAFE---FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------- 235 L L GLR + ++ IK Sbjct: 184 SYNDYLMKLALTITLELGLRRGELAGLTWDNIDLKNNKIKIINNLIKTGKGVTVTTPKTE 243 Query: 236 -------------ELPDGFMKLL---------------AMTPIGKETFFINNDKQKMNAT 267 + K+L + F+ + ++ Sbjct: 244 ESKRTLIISDTLVSMLKQHKKILNQNKLKYGEFYTKDNFFNNKKYDFIFVWENGIYVDPN 303 Query: 268 QFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 ++ F +NK H +R +AT+ G + G ++ Y+ Sbjct: 304 YWTHRFGRILKSLNINKKIRWHDLRHTNATLLLSQGVNFKTIQIRLGHADINTTLNIYSH 363 Query: 325 GADRIRLGIKNSRRISSVVDS 345 + + + +IS+++ S Sbjct: 364 VTEE--MQKDATNKISNLMKS 382 >gi|239948007|ref|ZP_04699760.1| integrase [Rickettsia endosymbiont of Ixodes scapularis] gi|239922283|gb|EER22307.1| integrase [Rickettsia endosymbiont of Ixodes scapularis] Length = 397 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 45/315 (14%), Positives = 101/315 (32%), Gaps = 25/315 (7%) Query: 32 RIRLPYPHESTFIPAYMSALTGSTPKR--------------EYINSPRKKPTTLKWLISE 77 RI++ + + + A A + E + P + T K L + Sbjct: 58 RIKIGRFPDLSIVDARAKAAELKSQIAKGINPTKENSTVSNELTDLPISEELTFKELFDK 117 Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQF 136 Y + ++ + D+ + I I+ + +A +F Sbjct: 118 YINNYAKHNIKR--WQDRIATMDRQAKHFYSLKISDIQRADIQQTFNDLTNVGKYTANRF 175 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL-- 194 L ++ +F A+ E + NP +++ ++ R TKE+ +F E + + Sbjct: 176 LETLSSIFNKAIEWELLEKNPVTGIKK-HKEQSRDRYITKEEAPRFFQTLEEETNQLMKD 234 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254 LY+G R S+ +++ + T + + + + Sbjct: 235 FILISLYTGARKSNVLSMRWENISFIDKTWYISDTKNGEPHTVVLIDEAIKILQDRKAQV 294 Query: 255 FFINNDKQKMNATQF----SIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMA 309 + +++ +K KAG+ H +R+ A+ A GA+ + + Sbjct: 295 INEWVFPSETSSSGHLQEPKKAWKRICQKAGLKNLRLHDLRRTCASWMAINGASQYVIGK 354 Query: 310 TYGWKTVDQAETYTK 324 K Y + Sbjct: 355 ALNHKHPRSTAIYAR 369 >gi|28572470|ref|NP_789250.1| DNA recombinase [Tropheryma whipplei TW08/27] gi|28410602|emb|CAD66988.1| putative DNA recombinase [Tropheryma whipplei TW08/27] Length = 306 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 38/277 (13%), Positives = 91/277 (32%), Gaps = 24/277 (8%) Query: 74 LISEYRKSAH-WGSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVESR-- 126 LI E+ + ++ ++ + II + + + I+ Sbjct: 15 LIREFIIYLENVRGYSSHTCRAYYRDLMCFGEYIITHDSRENVKSLRDVSIQDLRSWLYS 74 Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + S + ++S++ F+WA ++ A N ++ PK ++ +++ + Q Sbjct: 75 QSHKSARSIRRAVSSLKSFFRWAYDRKITAQNTAAALRAPKSTSQLPSVLSEKRIAQILG 134 Query: 185 FWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELP 238 +S + FE L S +R S+ + + +++ +++ V Sbjct: 135 NFSHTVPVIQLRNTAIFELLYASAIRVSELVSLDLDSIDHDLCTVRVDGKNGKQRVVLFG 194 Query: 239 DGFMKLLAMTPIGKETFFINN---------DKQKMNATQFSIWFKAKATKAGVNKSAHGV 289 L + + T + +++N + H + Sbjct: 195 KPASHALDLYLNMRHTLLSDRSSKALFLGSRGRRINPRVVYRLVSELLEMPKGPRGPHVL 254 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 R +AT D GA L G ++ + YT + Sbjct: 255 RHSAATHMLDNGADLRSLQEILGHSSLSTTQIYTHVS 291 >gi|53804979|ref|YP_113355.1| integrase/recombinase XerC [Methylococcus capsulatus str. Bath] gi|53758740|gb|AAU93031.1| integrase/recombinase XerC [Methylococcus capsulatus str. Bath] Length = 304 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 43/289 (14%), Positives = 95/289 (32%), Gaps = 25/289 (8%) Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR---KITTKHIRSGV 123 P +L+ L +Y + ++ ++ + + IR+ V Sbjct: 2 APDSLEQL-DDYLDRL-ARRASRHTHAAYRRDLCAFHAYCDSVNLAGWADVDAARIRAYV 59 Query: 124 ESRKHTP----SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 +R H S + L ++R F +++ + +NP +V P+ R + + Sbjct: 60 GTRHHRGELSARSLQRLLAAIRGFFDDLLKKRLLDVNPARAVRPPRSGRRLPRLLDVDAV 119 Query: 180 QQFKSFWSEG---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIIT 234 ++ ++ R +E SGLR S+ V + ++ K G Sbjct: 120 AGLLDAPADDRLETRDRAMWELFYSSGLRLSELVGLDVVDVDFGAGSVFVRKGKGGKARY 179 Query: 235 VELPDGFMKLLAMTPIG--------KETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284 V + ++ + + F++ +++ + + K G+ Sbjct: 180 VPVGAKALEAIGAWLEARRVLTGAGQPALFLSRQGRRIAPRTVEMRLERWRAKLGLSERV 239 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 H +R A+ +A + G T+ + YT D RL Sbjct: 240 HPHMLRHSFASHMLEASGDLRAVQELLGHATLATTQIYTH-VDFQRLAA 287 >gi|146297219|ref|YP_001180990.1| phage integrase family protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410795|gb|ABP67799.1| phage integrase family protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 360 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 48/369 (13%), Positives = 106/369 (28%), Gaps = 42/369 (11%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 L + K++ + ++ Y G+G+RIR + + + Sbjct: 3 LTGHIEKKKGKFQVVLEYGIDGNGKRIRKYKTFDKESEAKKYLIQMLANEGKFIP----- 57 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 L + + + +A + I ++ + + +++ T ++ Sbjct: 58 ----LNEFLDRWLEEYAKNYVAPKTYIKYKDSLKHVRKAFPSHTLQQLNTFELQKFFNQL 113 Query: 127 KHTPSSA--IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 T S A + + + K A++ + NP V+ P++ E + + Sbjct: 114 SQTLSQASVRKIYSVLNNALKTAIKWNMLKENPLEFVKLPQKYEEKKIKVWDIETVKKFL 173 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------------ 232 + + A L++GLR + C ++ I ++ Sbjct: 174 EDIKDEKIHTAVTLALHAGLRAGEICGLTWDNVDFEKKCIHIKQALQKIGKEIIIKPPKS 233 Query: 233 ----ITVELPDGFMKLLAMTPIGK-----------ETFFINNDKQKMNATQFSIWFKAKA 277 T+ + + L + I+ F+ FK Sbjct: 234 KTSIRTIYMTSYLYETLLEEYKRQEPLREAYKKLGNFVCIHETGNPFCPDYFTHTFKKLV 293 Query: 278 TKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQ-AETYTKGADRIRLGIKN 335 + G H +R ATI A G Y D + IK Sbjct: 294 SCLGYPEIRFHDLRHTFATILLQAQTNPKIAAEILGHSNTKLFLNLYAHVLDEQK--IKA 351 Query: 336 SRRISSVVD 344 + +I ++ Sbjct: 352 THKIEEILG 360 >gi|120553434|ref|YP_957785.1| tyrosine recombinase XerC [Marinobacter aquaeolei VT8] gi|120323283|gb|ABM17598.1| tyrosine recombinase XerC [Marinobacter aquaeolei VT8] Length = 324 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 38/268 (14%), Positives = 86/268 (32%), Gaps = 21/268 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSGVESRKH---TPSSAIQFLT 138 + + ++ +++ D D+ +++ +R V + S + L+ Sbjct: 29 KRHSPRTCEHYQRDLQRLVAWLADNGLNDWSELSAHDVRRYVARLSRDGLSGRSIARHLS 88 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRLA 195 S+R +++ +R+ NP L + PK R + + Q E + Sbjct: 89 SIRRFYQYLLREGLAIDNPALDIRAPKSGRRLPRVADVDQIGQLLDATPEDPLEIRDLAM 148 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254 FE + SGLR ++ A + L I+ K + + + L + Sbjct: 149 FELMYSSGLRLAELAGADLSALDLKGPEIRVLGKGNKERVLPVGRKAVAALQQWLSCRRA 208 Query: 255 F--------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATA 304 F++ +++ G ++ H +R A+ ++ Sbjct: 209 LVTEGEKALFVSQRGTRLSRRSIQSRLSRWGILHGADQRLHPHLLRHSFASHMLESSGDL 268 Query: 305 HELMATYGWKTVDQAETYTKGADRIRLG 332 + G + + YT D L Sbjct: 269 RAVQELLGHADIATTQVYTH-LDFQHLA 295 >gi|332171924|gb|AEE21178.1| tyrosine recombinase XerC [Glaciecola agarilytica 4H-3-7+YE-5] Length = 298 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 39/275 (14%), Positives = 99/275 (36%), Gaps = 17/275 (6%) Query: 67 KPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS---G 122 +L+ L+ +Y + +LA S +++ F I + + ++ +H+R Sbjct: 3 AQPSLQPLLDKYFDYLKYERNLAAKSIENYQRQFASICQTLSISSWSALSVEHVRQVLNH 62 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT---KEDM 179 + +P S L+++R + V E ++ NP +V+ PK+ + + Sbjct: 63 ARRQGLSPRSIALRLSALRGYCAYLVELEVLSSNPAKAVQAPKQGKPLPKQLNVDEMHQL 122 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239 F + + E GLR ++ + LQ++ K + + Sbjct: 123 LDFDDDSLLAIRDKAMLELTYSCGLRLAELADLNLNSLQDDGQLRVMGKGSKERLLPVGK 182 Query: 240 GFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 + + + F++ +++++ Q + + A + +++ + H + Sbjct: 183 KALTCVGQWLKVRGELADGNEPALFLSKHRRRISHRQIAKRMQLWAKQQHLDQDINPHKL 242 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT ++ + G + + YT Sbjct: 243 RHSFATHILESSGDLRGVQELLGHANLSTTQVYTH 277 >gi|189460431|ref|ZP_03009216.1| hypothetical protein BACCOP_01072 [Bacteroides coprocola DSM 17136] gi|189462397|ref|ZP_03011182.1| hypothetical protein BACCOP_03083 [Bacteroides coprocola DSM 17136] gi|189430903|gb|EDU99887.1| hypothetical protein BACCOP_03083 [Bacteroides coprocola DSM 17136] gi|189432863|gb|EDV01848.1| hypothetical protein BACCOP_01072 [Bacteroides coprocola DSM 17136] Length = 368 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 32/261 (12%), Positives = 80/261 (30%), Gaps = 15/261 (5%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI----RSGVESRKHTPSSA 133 Y + ++++ +++ YF + D +T + I V+ + + + Sbjct: 96 YLELLEQKRYSLSTIKAYKIYFSDFMEYHKGQDLDLLTVEDINSYMLHMVKEKHISATQQ 155 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193 + +++ ++ + + + ++E+M+ + R Sbjct: 156 NMRINAIKFYYEKVRKGKRQYYGGIARAKE---YKALPEVLSREEMKS-IFAQLSNRKHR 211 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----ELPDGFMKLLAMT 248 + +GLR S+ Q + + I+ G +L + Sbjct: 212 CMISLIYSAGLRRSELLNLTPQDIISERMLIRIAGKGKKCRYSLLSEKLLNELRAYYREY 271 Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHE 306 K F ++ + + K A KAG+ H +R AT + G Sbjct: 272 RPQKWLFEGEQAGEQYSPSALVKILKEAARKAGIKHRVHLHMLRHTFATHLLEQGTDLRT 331 Query: 307 LMATYGWKTVDQAETYTKGAD 327 + G + Y ++ Sbjct: 332 IQELMGHTDIKTTAIYLHVSN 352 >gi|327313166|ref|YP_004328603.1| tyrosine recombinase XerC [Prevotella denticola F0289] gi|326944725|gb|AEA20610.1| tyrosine recombinase XerC [Prevotella denticola F0289] Length = 292 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 39/275 (14%), Positives = 94/275 (34%), Gaps = 24/275 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFD---QIIRKSG-DFDYRKITTKHIRSGVESRKHT 129 I + + + + IS+ + + ++ G + + T +R +E Sbjct: 2 IDMFLDYLRLERNYSPMTVISYRKDLEAFERFCQELGPQITWESVDTDVVRDWMEDMMDK 61 Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ----- 181 SS + ++++R +++A+R V+ +P ++ P+R+ + + +M+Q Sbjct: 62 GNAASSVNRRISALRSFYRFALRCGLVSKDPVHGLQGPRRQKPLPQFLKESEMEQLLDPA 121 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDG 240 + R +G+R S+ + + + T K + Sbjct: 122 MWTDGYGDVLARTLIVTFYETGIRLSELTGLDDRDVDDVTCELKVTGKRNKQRIIPFGKE 181 Query: 241 FMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGVR 290 + LA ++ F ++M Q K ++ ++ H +R Sbjct: 182 LEETLAAYRCVRDARTGDSSPALFRTEKGERMTNAQVRALVKKNLSRVSTLKKRTPHVLR 241 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 AT + A + G +++ E YT Sbjct: 242 HTFATAMLNHEAGLESVKKLLGHESLSTTEIYTHT 276 >gi|217969617|ref|YP_002354851.1| tyrosine recombinase XerD [Thauera sp. MZ1T] gi|217506944|gb|ACK53955.1| tyrosine recombinase XerD [Thauera sp. MZ1T] Length = 309 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 53/314 (16%), Positives = 101/314 (32%), Gaps = 29/314 (9%) Query: 51 LTGSTPKREYINSPRKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDF 109 ++G P RE P + L + + LA N+ + S + Sbjct: 1 MSGRAPAREAGLQPAHRAE-LDRFADALWLEH----GLARNTLAGYRSDLARFAAWLETR 55 Query: 110 DYRKITTKHIRSGVE----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165 R SR P+S + + + R ++ + +A +P L+++ P+ Sbjct: 56 AQRLPAAAGADLAAYLAEFSRAAKPASQRRLIAAWRRYYRLLLANREIAEDPTLAIDTPR 115 Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221 + ++ ++ + + + + R E L +GLR S+ + + N Sbjct: 116 AAERFPKTLSEPQVEALLAAPALDTPQGLRDRCMLEVLYAAGLRVSELVGLKIFAVGVNE 175 Query: 222 FSIKTQKT-GTIITVELPDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFS 270 ++ V L + L + F+ M+ F Sbjct: 176 GVVRVMGKGSKERLVPLGEIAADWLQRYLAEARPVLLAGRSCDEIFVTRLGAAMSRQMFW 235 Query: 271 IWFKAKATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 K A AG+ S H +R AT + GA + G + + YT A Sbjct: 236 RLIKHYALAAGIAPERISPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVA- 294 Query: 328 RIRLGIKNSRRISS 341 R RL ++R Sbjct: 295 RERLKQLHARHHPR 308 >gi|145637619|ref|ZP_01793275.1| tyrosine recombinase [Haemophilus influenzae PittHH] gi|145269216|gb|EDK09163.1| tyrosine recombinase [Haemophilus influenzae PittHH] Length = 325 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 37/271 (13%), Positives = 88/271 (32%), Gaps = 20/271 (7%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESR 126 ++ Y ++ ++ +++ D I+ D T + I + + + Sbjct: 4 ALNRYWDYLRIERQMSPHTLTNYQHQLDATIKILAQQDIHSWTQVTPSVVRFILAESKKQ 63 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 S L+++R + V+Q + +NP + PK+ + E +QQ + Sbjct: 64 GLKEKSLALRLSALRRFLSFLVQQGELKVNPTTGISAPKQGKHLPKNMDGEQVQQLLAND 123 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 + R E + SGLR S+ + + + ++ V Sbjct: 124 SKEPIDIRDRAILELMYSSGLRLSELQGLDLNSINTRVREVRVIGKGNKERVVPFGRYAS 183 Query: 243 KLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293 + E F++ +++ + + G+ + + H +R Sbjct: 184 HAIQEWLKVRALFNPKDEALFVSQLGNRISHRAIQKRLETWGIRQGLNSHLNPHKLRHSF 243 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324 AT +A + + G + + YT Sbjct: 244 ATHMLEASSDLRAVQELLGHSNLSTTQIYTH 274 >gi|153008277|ref|YP_001369492.1| site-specific tyrosine recombinase XerC [Ochrobactrum anthropi ATCC 49188] gi|151560165|gb|ABS13663.1| tyrosine recombinase XerC [Ochrobactrum anthropi ATCC 49188] Length = 315 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 42/293 (14%), Positives = 83/293 (28%), Gaps = 35/293 (11%) Query: 71 LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS-------------GDFDYRKITT 116 L E+ K+ L+ N+ ++E Q + G+ + + Sbjct: 15 LAAAREEWLKTLKDARRLSENTLEAYERDTRQFLNFLTGHLGEPPSLKDVGNLRIADLRS 74 Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + + + + L +R L + ++ ++ P++ +P T Sbjct: 75 --FLASRRNEGVGARTLGRGLAGVRSLLRHLEKRGLANAAGASAMRAPRQPKSLPKPLTA 132 Query: 177 EDMQ-------QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQ 227 ED + Q ++ L GLR S++ L ++ T Sbjct: 133 EDARRVVAADGQMAEEPWIAARNAAVLTLLYGCGLRISEALGLMGDALSDSTARSITITG 192 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-------FSIWFKAKATKA 280 K V L + +A + A + Sbjct: 193 KGNKARLVPLLPIVHRAVAQYRTLCPFDLSADKPLFRGAKGGVLHAAIIQREMQKLRAGL 252 Query: 281 GVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 G+ + H +R AT G + G ++ + YT G D RL Sbjct: 253 GLPDSATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYT-GVDTERL 304 >gi|308051404|ref|YP_003914970.1| tyrosine recombinase XerC [Ferrimonas balearica DSM 9799] gi|307633594|gb|ADN77896.1| tyrosine recombinase XerC [Ferrimonas balearica DSM 9799] Length = 296 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 38/281 (13%), Positives = 92/281 (32%), Gaps = 24/281 (8%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKH- 128 Y ++ + + ++ ++ + G D++ + T+H ++ + Sbjct: 6 QAFRGYLENE--RQYSAYTVRNYLKELERALPLLQAQGLTDWQGLRTQHCQALLAKLHRQ 63 Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 +P S L+++R L K+ +R+ + +P + V+ PK+ + + + + Sbjct: 64 GLSPRSLSLTLSALRQLIKFLLREGTLTHDPMVGVQAPKQGRPLPKNLDVDQVNRLLELN 123 Query: 187 SEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM 242 + + R E SGLR ++ L ++ G + + + Sbjct: 124 DDDPLVIRDRAMMELFYSSGLRLAELVALDCPQLSLTDREVRVMGKGGKERILPVGNKAS 183 Query: 243 KLLAMT---------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRK 291 + LA F++N +++ ++ H +R Sbjct: 184 EWLAKYLALRPALLKGKECAALFLSNRGSRISRRSVQARLTEWGQSQALDSKVHPHKLRH 243 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 AT +A + G + + YT D L Sbjct: 244 SFATHLLEASKDLRAVQELLGHANLSTTQIYTH-LDFQHLA 283 >gi|238793576|ref|ZP_04637200.1| Tyrosine recombinase [Yersinia intermedia ATCC 29909] gi|238727166|gb|EEQ18696.1| Tyrosine recombinase [Yersinia intermedia ATCC 29909] Length = 276 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 44/261 (16%), Positives = 85/261 (32%), Gaps = 20/261 (7%) Query: 91 SRISFESYFDQIIR---KSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLF 144 + S+ ++ + G ++ + +RS V K SS L+++R Sbjct: 2 TITSYRRQLQALMEMGEQMGLMHWQTLDAAQVRSLVSRSKRAGLHSSSLALRLSALRSFL 61 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRLAFEFLLY 201 W V Q + NP V P+ + +++ + + R E + Sbjct: 62 DWLVSQGVLQANPAKGVSTPRSGRHLPKNIDVDEVDKLLDIDLNDPLAVRDRAMLEVMYG 121 Query: 202 SGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMT-------PIGKE 253 +GLR S+ +H+ + K V + + LA + Sbjct: 122 AGLRLSELVGMNCKHVDLASGEVWVMGKGSKERKVPIGRTAVTWLAHWLELRELFEPVDD 181 Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATY 311 F+ N ++++A F K GV + H +R AT ++ + Sbjct: 182 AIFLANTGKRISARNVQKRFAEWGVKQGVSSHIHPHKLRHSFATHMLESSGDLRAVQELL 241 Query: 312 GWKTVDQAETYTKGADRIRLG 332 G + + YT D L Sbjct: 242 GHANLTTTQIYTH-LDFQHLA 261 >gi|330501235|ref|YP_004378104.1| site-specific tyrosine recombinase XerC [Pseudomonas mendocina NK-01] gi|328915521|gb|AEB56352.1| site-specific tyrosine recombinase XerC [Pseudomonas mendocina NK-01] Length = 298 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 41/295 (13%), Positives = 93/295 (31%), Gaps = 24/295 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESRKHTP 130 + Y + ++V++ + + G D+ ++ T+++R V Sbjct: 5 LDAYLEHLRRERQVSVHTLDGYRRDLGKVLAFCEAEGLSDWAELDTRNLRRLVARLHQQG 64 Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S + L++ R L+++ +R+ +P + PKR+ R + Q Sbjct: 65 LSSRSLARLLSATRGLYQYLLREGLCRHDPATGLSPPKRERRLPRTLDADRSAQLLDGAV 124 Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 E + + E SGLR S+ + L I+ + + + + Sbjct: 125 EDDFIARRDQAMLELFYSSGLRLSELVGLDLDGLDLPAGLIRVRGKGNKVRELPVGSLAR 184 Query: 243 KLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSA 294 + L FI+ +++ + + G + H +R A Sbjct: 185 QALEQWLPLRKLANPSDGAVFISQQGRRLGPRAVQLRVHQAGVRELGQHLHPHMLRHSFA 244 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG---IKNSRRISSVVDSD 346 + ++ + G + + YT D L + R S+ Sbjct: 245 SHMLESSQDLRAVQELLGHADIATTQIYTH-LDFQHLANVYDQAHPRAKRKGGSE 298 >gi|168179463|ref|ZP_02614127.1| phage integrase [Clostridium botulinum NCTC 2916] gi|182669587|gb|EDT81563.1| phage integrase [Clostridium botulinum NCTC 2916] Length = 387 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 55/383 (14%), Positives = 111/383 (28%), Gaps = 59/383 (15%) Query: 17 RHGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 ++GK + R +G+ IR + S + + + K T L Sbjct: 9 KNGKKYFRVTASLGRDYNGKLIRKEFYGSSK--KEAENKRDEYLNGIKSGLNIDYKNTVL 66 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESRKHT 129 L+ + + +S +E + I+ + + T ++ Sbjct: 67 GELMHTWLFEIMRVKVKPSSFERYEGIYRNYIKNSQLFGLKLADLKTIQVQRYYNELYSA 126 Query: 130 PSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP----WTKEDMQQF 182 ++ +R +AV + Y+ NPCL + + + + Sbjct: 127 GKTSSVIENLNKLLRTFLNYAVNEGYILKNPCLGSKIIIPGNKDKKENEIEIFTDKEITA 186 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------- 232 EG + + L SGLR + + + F I+ K+ Sbjct: 187 LKKALEGHRLKCLILLALGSGLRQGELLALRWSDINFDTFEIQVNKSIKHVKIISPDGTG 246 Query: 233 ---------------ITVELPDGFMKLLAMT--------------PIGKETFFINNDKQK 263 V +P + +L I K F N + Sbjct: 247 ERKTIEQSPKSKTSNRIVPIPSKLINVLEEHKALQDIEKKAAGSSYIDKNLIFANEIGRP 306 Query: 264 MNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAET 321 + +K AG+ K H +R AT + G + G K + A+ Sbjct: 307 ILVKNIFRIYKNILISAGIKHKKFHSLRHTYATKLFEKGVQLKTVQKLLGHKDISITADI 366 Query: 322 YTKGADRIRLGIKNSRRISSVVD 344 YT + ++ +++ + D Sbjct: 367 YTHVMPKEKVL--AVDKLNDLFD 387 >gi|329114535|ref|ZP_08243294.1| Tyrosine recombinase XerC [Acetobacter pomorum DM001] gi|326696015|gb|EGE47697.1| Tyrosine recombinase XerC [Acetobacter pomorum DM001] Length = 315 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 43/304 (14%), Positives = 90/304 (29%), Gaps = 42/304 (13%) Query: 69 TTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRK-------------SGDFDYRKI 114 T + + ++ + + + +++ + + G R Sbjct: 1 MTAEEAVQKFLEWMAVEKQASPLTIEAYQGDLARFLGFMTTHLDGLPDMVGLGLISLRDF 60 Query: 115 TTKHIRSGVESRKHTPS---------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165 E+ K T + + ++++R FK+ R++ V + P+ Sbjct: 61 RAWLAYEQAEASKPTARKTSSDQATRTRARRVSAVRSFFKYLARRQGVENPAIQLLSTPR 120 Query: 166 RKTEGIRPWTKED-------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218 K RP K+ + E + F L GLR S++ + L Sbjct: 121 TKKPLPRPLAKDQALAAPEDISDLAHTPMEQQRDAALFLLLYGCGLRISEALNLNIADLD 180 Query: 219 NNIFSIKTQ---KTGTIITVELPDGFMKLLAMTPIGKETFFIN------NDKQKMNATQF 269 S + K G V + + L + +++ Sbjct: 181 VMRSSNVLRILGKGGKERLVPVLPVVQQALEAWRGRHPAPTPDAPLFVGIRGKRLQPAIA 240 Query: 270 SIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 + +G+ + H +R AT + GA + G ++ + YT AD Sbjct: 241 QKAMREWRHLSGLPDYVTPHALRHSFATHLMEGGADLRVIQELLGHASLSTTQRYT-LAD 299 Query: 328 RIRL 331 RL Sbjct: 300 EARL 303 >gi|237717516|ref|ZP_04547997.1| phage integrase [Bacteroides sp. 2_2_4] gi|229453185|gb|EEO58976.1| phage integrase [Bacteroides sp. 2_2_4] Length = 343 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 53/302 (17%), Positives = 98/302 (32%), Gaps = 41/302 (13%) Query: 85 GSLAVNSRISFESYFDQIIRK--------SGDFDYRKITTKHIRSGVE----SRKHTPSS 132 +L+ N+++S+ F ++ + ITT I ++ RK + SS Sbjct: 28 RNLSRNTQMSYRDTFRMLVSYVSTLISIAIDNLKISDITTDVITKFLDYLEIERKVSVSS 87 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK--------- 183 L +++ K+ + I+ C V K R T D + + Sbjct: 88 RNNRLAAIKAFAKFLAWKSPEHIDWCHHVSLIPSKKTEKRMITYMDKSEIEALADAPLKT 147 Query: 184 -SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-----NIFSIKTQKTGTIITVEL 237 + S+ + F+ +G R S+ V+ + K L Sbjct: 148 CKYQGIRSRDHVIILFMYNTGARVSEVIGVKVKDVAMPPKRGMPMVTLHGKGRKERICPL 207 Query: 238 PDGFMKLLAMTPIGKETFFI---NNDKQKMNATQFSIWFKAKATKAGVNK--------SA 286 + F LL K N Q M+ K + +N S Sbjct: 208 WEDFWDLLKPFIDNKLPNDYLFLNRYNQPMSRFCIYEMIKKYSQDVILNHPSLANKRPSP 267 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346 H +R +AT ++GA + G ++D Y + + +L + ++ V SD Sbjct: 268 HVIRHTTATHLLNSGADIDMVRNWMGHSSIDTTNIYAEISMERKL--EALKKCEQSV-SD 324 Query: 347 DP 348 P Sbjct: 325 TP 326 >gi|149202773|ref|ZP_01879745.1| tyrosine recombinase XerD [Roseovarius sp. TM1035] gi|149144055|gb|EDM32089.1| tyrosine recombinase XerD [Roseovarius sp. TM1035] Length = 323 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 43/295 (14%), Positives = 91/295 (30%), Gaps = 33/295 (11%) Query: 72 KWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSG---VES 125 I + ++ A N+ +++ + + +T I ++ Sbjct: 5 ARWIDLFLEAQAAELGAAKNTLLAYARDLKDFSEWVENQGLALQTLTQPDIDRYLVFCDA 64 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK-------ED 178 + ++ + L+++R L+++A + A NP + ++ P + + ++ + Sbjct: 65 QGLARATRARRLSAIRQLYRFAFDERLRADNPAIRIKGPGKAQRLPKTLSEEEVSRLLDM 124 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVEL 237 SE S+ L +G+R S+ + + + I K G V L Sbjct: 125 APAHGRTASERSRNACLVALLYATGMRVSELVSLPLGAARGDPRMILVRGKGGKERMVPL 184 Query: 238 PDGFMKLLAMT----------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 L+ F + +F K + KA Sbjct: 185 SPPARAALSDWLAIRDAEESARRAKGVQSSPYLFASGGASGHLTRHRFYNLIKEISVKAH 244 Query: 282 VN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 V+ + H +R AT GA + G V E YT + + Sbjct: 245 VDPDKVTPHTLRHAFATHLLANGADLRVIQTLLGHADVATTEIYTHVLEARLQAL 299 >gi|309751724|gb|ADO81708.1| Site-specific tyrosine recombinase XerC [Haemophilus influenzae R2866] Length = 295 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 36/271 (13%), Positives = 86/271 (31%), Gaps = 20/271 (7%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESR 126 ++ Y ++ ++ +++ D I+ D T + I + + + Sbjct: 4 ALNRYWDYLRIERQMSPHTITNYQHQLDATIKILAQQDIHSWTQVTPSVVRFILAESKKQ 63 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 S L+++R + V+Q + +NP + PK+ + E +QQ + Sbjct: 64 GLKEKSLALRLSALRRFLSFLVQQGELKVNPATGISAPKQGRHLPKNMDGEQVQQLLAND 123 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 + R E + SGLR S+ + + + ++ V Sbjct: 124 SKEPIDIRDRAILELMYSSGLRLSELQGLDLNSINTRVREVRVIGKGNKERVVPFGRYAS 183 Query: 243 KLLAMTPIGKETFFIN-------NDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293 + + F +++ + + G+ + + H +R Sbjct: 184 HAIQEWLKVRALFNPKGEALFVSQLGNRISHRAIQKRLETWGIRQGLNSHLNPHKLRHSF 243 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324 AT +A + + G + + YT Sbjct: 244 ATHMLEASSDLRAVQELLGHSNLSTTQIYTH 274 >gi|329942671|ref|ZP_08291450.1| phage integrase, N-terminal SAM-like domain protein [Chlamydophila psittaci Cal10] gi|313847852|emb|CBY16846.1| putative integrase/recombinase [Chlamydophila psittaci RD1] gi|325506606|gb|ADZ18244.1| site-specific tyrosine recombinase [Chlamydophila psittaci 6BC] gi|328814931|gb|EGF84920.1| phage integrase, N-terminal SAM-like domain protein [Chlamydophila psittaci Cal10] gi|328914512|gb|AEB55345.1| site-specific recombinase, phage integrase family [Chlamydophila psittaci 6BC] Length = 312 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 37/294 (12%), Positives = 95/294 (32%), Gaps = 42/294 (14%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKS---------------------GDFDYRKIT 115 +Y K+ + ++ ++ + + + +T Sbjct: 10 DYLKNIKTA--SPHTLRNYCIDLNDFKNFLEKHGELTPSPPICLVTKERQEAELPFSLLT 67 Query: 116 TKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 +R + + + L++++ ++ V+ + +P +++ P+ E Sbjct: 68 KDAVRLYILKLMQENKAKRTIKRRLSAIKSFSQYCVKHRILPEDPTETIQGPRLPKELPS 127 Query: 173 PWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228 P T E ++ + G + R E SGLR S+ + I+ + Sbjct: 128 PITYEQVEILMATPDLSKYTGFRDRCLLELFYSSGLRISEIVAINHWDIDFTSHLIRIRG 187 Query: 229 T-GTIITVELPDGFMKLLAMTPIGK---------ETFFINNDKQKMNATQFSIWFKAKAT 278 V + + L + F+N +++ F+ Sbjct: 188 KGKKERLVPMTPHAAQWLQQYLTHPARTGIEKDSQAIFLNRFGKRLTTRSIDRKFQKYLR 247 Query: 279 KAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 ++G+ N + H +R AT + G + A G +++ YT + +++ Sbjct: 248 QSGLSGNITPHTIRHTIATHWLENGMDLKTIQALLGHSSLETTTIYTHVSMKLK 301 >gi|261867252|ref|YP_003255174.1| site-specific tyrosine recombinase XerC [Aggregatibacter actinomycetemcomitans D11S-1] gi|293391244|ref|ZP_06635578.1| tyrosine recombinase XerC [Aggregatibacter actinomycetemcomitans D7S-1] gi|261412584|gb|ACX81955.1| tyrosine recombinase XerC [Aggregatibacter actinomycetemcomitans D11S-1] gi|290951778|gb|EFE01897.1| tyrosine recombinase XerC [Aggregatibacter actinomycetemcomitans D7S-1] Length = 296 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 36/272 (13%), Positives = 89/272 (32%), Gaps = 21/272 (7%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESRKH- 128 + Y ++ ++ +++ + I++ +G ++++T +R V Sbjct: 4 ALQHYFTYLRVERQVSPHTLSNYQRQLARVTAILQGAGITQWQQVTASVVRYVVAQSSKQ 63 Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 S L+++R + V+Q + +NP + PK+ + + +Q + Sbjct: 64 DGLKEKSLALRLSALRRFLTYLVQQGELKVNPATGISAPKQAKHLPKNIDTDQVQLLLAN 123 Query: 186 W---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 + R E L SGLR S+ + + ++ V Sbjct: 124 DSKEPIDIRDRAIIELLYSSGLRLSELQGLNLNSIHLRSREVRVIGKGNKERVVPFGRYA 183 Query: 242 MKLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKF 292 + F++ +M+ + + + G+ + + H +R Sbjct: 184 SHAIQQWLKVRLLFNPKDNALFVSQLGNRMSHRAIQMRLETWGIRQGLNSHLNPHKLRHS 243 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324 AT +A + + G + + YT Sbjct: 244 FATHMLEASSDLRAVQELLGHSNLSTTQIYTH 275 >gi|229817402|ref|ZP_04447684.1| hypothetical protein BIFANG_02664 [Bifidobacterium angulatum DSM 20098] gi|229785191|gb|EEP21305.1| hypothetical protein BIFANG_02664 [Bifidobacterium angulatum DSM 20098] Length = 316 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 45/297 (15%), Positives = 90/297 (30%), Gaps = 40/297 (13%) Query: 70 TLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVES 125 T + I E+ L+ N+ S+ + + G +IT +R + Sbjct: 5 TFEKHIREFETYLGANRGLSGNTLKSYRTDVLDCLTYLESQGIEALDEITIDDLRGWMGQ 64 Query: 126 RKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 R + SS + + ++R F W + NP +++ PK +++ ++ Sbjct: 65 RSPSHARSSMARGVVAVRCFFSWGYEHGIIRTNPASALKTPKIADTLPTVLSEDQAERLM 124 Query: 184 SFWSE----------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTI 232 E + E L +G+R ++ + + N T K Sbjct: 125 DREDETAAQSPDDPKALRDAAILELLYATGIRVAELVGLDIADVDFSNRTVKVTGKGNKQ 184 Query: 233 ITVELPDGFMKLLAMTPIG----------------------KETFFINNDKQKMNATQFS 270 V + F+ ++++ Sbjct: 185 RVVPFGLPAAHAVEAWLKHGRPSVLESCSGMQRTDGDADDAMRALFLGMRGRRLDQRMAR 244 Query: 271 IWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 A +AGV H +R +AT D GA E+ G ++ + YT + Sbjct: 245 RVVHDAARRAGVPDVGPHALRHSAATHLLDGGADLREVQEMLGHSSLKTTQRYTHVS 301 >gi|213964731|ref|ZP_03392931.1| tyrosine recombinase XerC [Corynebacterium amycolatum SK46] gi|213952924|gb|EEB64306.1| tyrosine recombinase XerC [Corynebacterium amycolatum SK46] Length = 304 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 45/281 (16%), Positives = 100/281 (35%), Gaps = 28/281 (9%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129 ++ ++ ++ + L+ + ++ + ++ G +++T IR+ + ++ Sbjct: 21 IEAILMDFLDELTYSRRLSGATVRAYRADLMPLLA--GLDHISELSTPVIRAHLGAKHAE 78 Query: 130 PSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 ++ + TS+R W V ++ + +P L + PK+ + E +++ Sbjct: 79 GAARSSLARLTTSIRQFCSWLVARQILDADPSLRLSTPKKHQHLPEVLSPEKVEEAIEKV 138 Query: 187 S-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDG 240 S ++ E L +G+R + C+A V + + I K V Sbjct: 139 SSEDSAVAARDLAIVELLYATGMRVEELCKADVSDVNFSRHIISVVGKGDKQRIVPFGAP 198 Query: 241 FMKLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAGVNKSAHGVR 290 L + F + + N Q A + S H +R Sbjct: 199 AEAALKGWLQVRGNFPASAQAEHALFLGVRGGRLNPRQARRVIHKWA-----DVSPHALR 253 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330 +AT + GA + G ++ + YT ADR+R Sbjct: 254 HSAATAMVEGGADLRVVQEMLGHSSLATTQIYTHVSADRLR 294 >gi|226314997|ref|YP_002774893.1| hypothetical protein BBR47_54120 [Brevibacillus brevis NBRC 100599] gi|226097947|dbj|BAH46389.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 290 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 43/286 (15%), Positives = 92/286 (32%), Gaps = 21/286 (7%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSG--- 122 L I + + + + ++ R ++ I Sbjct: 6 LTQAIDIFLQYLSSIGRSEQTITGYKKDLSYFTRFLERKYNCEPYIDEVLVTDIEDFLLY 65 Query: 123 -VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 R + P+S + L + R F +A ++E+V+ N LSVE+ K + + +E Sbjct: 66 LKTERAYAPASRQRNLHTFRSFFAYAQKKEWVSRNIALSVEKIKVQQKERTYL-EEAEVD 124 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPD 239 + RL L +G+R S+ V ++ + + K + + Sbjct: 125 ELVSEIDHPLIRLVVMVLYMTGMRISECLNLKVDEVKWDQQVIHVVAGKGNKDRFIPISP 184 Query: 240 GFMKLLAMTPIGK------ETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRK 291 + +L + FF K++ + + G +AH +R Sbjct: 185 RLLPMLKEYVLHHRPDSDSNRFFCTKKTGKLSPVYVNREITEAVKRLGWSKKVTAHILRH 244 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKNS 336 A+ ++ G +++ YT D++R I + Sbjct: 245 SFASQLVKKDVNLVQIQKLLGHSSLNVTSVYTHTNLDQLRDAISHL 290 >gi|48428759|gb|AAT42408.1| site-specific recombinase XerC [Collimonas fungivorans Ter331] Length = 324 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 51/297 (17%), Positives = 91/297 (30%), Gaps = 43/297 (14%) Query: 78 YRKSAH-WGSLAVNSRISFESYFDQII---RKSGD-FDYRKITTKHIRSGVESRKHT--- 129 Y S L+ ++ ++ ++ + GD + + IT HIR Sbjct: 13 YLDSLAGQRQLSAHTISNYGRDLKELASLTQALGDNWQFAAITHFHIRKFAAQLHSRGLN 72 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR--------PWTKEDMQQ 181 PSS + L++ R F+W Q +A NP V+ PKR + Sbjct: 73 PSSIARKLSAWRGFFEWLAEQTTLASNPVEGVKAPKRTKPLPKAMAADDAIHLVASGNPL 132 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------ 229 + S + FE L SGLR S+ + + + Sbjct: 133 ADAGSSMALCNQAMFELLYSSGLRVSELAGLDLHYSRQPDHESAGWIDLDAAEVTVTGKG 192 Query: 230 GTIITVELPDGFMKLLAMTPI------------GKETFFINNDKQKMNATQFSIWFKAKA 277 G +V + ++ +A F+ +++ + K A Sbjct: 193 GKKRSVPVGKPAIQAIAAWLPQRAALLKSDQGEHAAALFLTERGTRVSPRVVQLRLKHHA 252 Query: 278 TKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 G+ N H +R A+ + G ++ + YT D RL Sbjct: 253 QSLGIASNVHPHVLRHSFASHMLQGSGDLRAVQELLGHASIAATQVYT-SLDFQRLA 308 >gi|167036277|ref|YP_001671508.1| site-specific tyrosine recombinase XerC [Pseudomonas putida GB-1] gi|189030081|sp|B0KQ43|XERC_PSEPG RecName: Full=Tyrosine recombinase xerC gi|166862765|gb|ABZ01173.1| tyrosine recombinase XerC [Pseudomonas putida GB-1] Length = 299 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 41/295 (13%), Positives = 93/295 (31%), Gaps = 24/295 (8%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESRKH-- 128 + Y ++ ++ + + D++ ++ G D++ + + +R + H Sbjct: 5 LEAYCAHLRNERQVSEHTLLGYRRDLDKVIAYCKEHGIADWQALQIQQLRQLIARLHHHG 64 Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS--- 184 + S + L+++R L+++ R+ +P + PK + + + Q Sbjct: 65 QSSRSLARLLSAVRGLYRYLNREGLCQHDPATGLSAPKGERRLPKVLDTDRALQLLDGGV 124 Query: 185 -FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFM 242 + + E SGLR S+ + HL K G + + Sbjct: 125 DDDFIARRDQAILELFYSSGLRLSELTNLDLDHLDLAAGLVQVLGKGGKARVLPVGRKAR 184 Query: 243 KLLAMTP-------IGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSA 294 + L FI +++ + KA + G + H +R A Sbjct: 185 EALQAWYRLRGIGNPRDRAVFITRQGNRISPQAVRLRVKAAGERELGQHLHPHMLRHSFA 244 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI---KNSRRISSVVDSD 346 + ++ + G + + YT D L R +D Sbjct: 245 SHVLESSQDLRAVQELLGHADISTTQIYTH-LDFQHLAAVYDSAHPRAKRSKGND 298 >gi|50914372|ref|YP_060344.1| DNA integration/recombination/invertion protein [Streptococcus pyogenes MGAS10394] gi|50903446|gb|AAT87161.1| DNA integration/recombination/invertion protein [Streptococcus pyogenes MGAS10394] Length = 374 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 49/345 (14%), Positives = 102/345 (29%), Gaps = 33/345 (9%) Query: 11 VTKERTRHGKIIY----YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 + + +G+ Y Y +G+R + T +A + ++ P+ Sbjct: 15 IKSYKKENGETAYKFLLYAGYVNGKRKYIRREGFKT----KQAARETLISLQAELDKPKS 70 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 T L ++ K + + I+ K I I+ E Sbjct: 71 -SMTFGALTDQWLKEYEKTVQGSTYLKTERNINKHILPKLDKVKIGDINPLLIQRLTEEW 129 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-----IRPWTKEDMQQ 181 + + L +R + AVR Y+ NP L + PK K + + Sbjct: 130 CNDLKYGGKILGLVRNILNLAVRYGYINNNPALPITPPKIKRKRKMNNNFYTLDQLKQFL 189 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--------------FSIKTQ 227 ++ + F L ++G+R + L N T+ Sbjct: 190 ELVEKTDNIEKIALFRLLAFTGIRKGELLALTWDDLNGNTLSINKAVTRTQVGLEIDVTK 249 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ---KMNATQFSIWFKAKATKAGVNK 284 + + L D +++L T + + M + W + + Sbjct: 250 TKSSDRLISLDDETLEILQELHETFPTSTLMFQSESGGIMTPSLPRKWLLQIIKGTDLPQ 309 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGAD 327 + HG R A++ ++G + ++ G + YT Sbjct: 310 ITIHGFRHTHASLLFESGLSLKQVQHRLGHGDLQTTMNVYTHITQ 354 >gi|288956928|ref|YP_003447269.1| integrase/recombinase [Azospirillum sp. B510] gi|288909236|dbj|BAI70725.1| integrase/recombinase [Azospirillum sp. B510] Length = 355 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 48/293 (16%), Positives = 96/293 (32%), Gaps = 38/293 (12%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVE--SRKHT 129 + + AVN+R+++E + R T+ +R+ + + Sbjct: 41 LDAFLDMLTAERGAAVNTRLAYERDLADLGRWLAQRGVALEGAGTEDLRAYLAVQGKDGA 100 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--- 186 P + + L++MR +++ + + + +P ++ PK+ + ++ ++ S Sbjct: 101 PRTVARRLSAMRQFYRFLLSEGRRSDDPASPLDSPKQGRPLPKILSEAEVGAMLSTAEAR 160 Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFMK 243 EG + E L +GLR S+ + + + + K G V L D + Sbjct: 161 GGPEGLRLVALLEVLYATGLRVSELVGLPMTAIMRDGRGLLVRGKGGKERMVPLSDPALA 220 Query: 244 LLAMTPIGKETFFINNDKQKM------------------------NATQFSIWFKAKATK 279 LA + F +F+ K A Sbjct: 221 ALAAYIPVRAHFIPPGTGAGGGGAGGEGGHSPFLFPSRISAEGYLTRQRFAQLLKQLAID 280 Query: 280 AGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AG++ S H +R AT D GA + G + + YT Sbjct: 281 AGIDPEKVSPHVLRHAFATHLLDHGADLRSVQKMLGHADIATTQIYTHVVTER 333 >gi|319409436|emb|CBI83085.1| integrase/recombinase XerD [Bartonella schoenbuchensis R1] Length = 312 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 34/290 (11%), Positives = 90/290 (31%), Gaps = 33/290 (11%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVESR 126 +I + + ++ ++++ + + + ++ S + + Sbjct: 5 AVIDRFLEMMSAERGACAHTLSAYQNDLQWAHDQLCSRSVSLFSAQREDLINLLSLMHTA 64 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-------------- 172 +S + L+++R +++ + +P ++ P+++ + Sbjct: 65 GFAATSQARRLSTLRQFYQFLYAEGLRTDDPSHDIDTPRQRRLLPKTMNEDTVTKLLDRA 124 Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GT 231 + + ++ E L +GLR S+ VQ ++ I + Sbjct: 125 QLEVDQTDYGSKNHMRALRLQVLIEMLYATGLRISELVSLPVQAVRGKEQFIVVRGKGEK 184 Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ---------FSIWFKAKATKAGV 282 V L D ++++ + ++ A + K A +AGV Sbjct: 185 ERMVLLSDKACQVISQWLVLRDQGKDAASFYLFPARSSTGYVARQFVARGLKELAERAGV 244 Query: 283 N---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 S H +R A+ GA + G + + YT + Sbjct: 245 KSSNFSPHVLRHAFASHLLQNGADLRVVQHLLGHCDISTTQIYTHVLEER 294 >gi|85060322|ref|YP_456024.1| site-specific tyrosine recombinase XerC [Sodalis glossinidius str. 'morsitans'] gi|84780842|dbj|BAE75619.1| phage integrase [Sodalis glossinidius str. 'morsitans'] Length = 303 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 40/278 (14%), Positives = 91/278 (32%), Gaps = 21/278 (7%) Query: 75 ISEYRKSAHWG-SLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESRKHTP 130 + + L+ +R S++ +I + G ++R++ +R+ K Sbjct: 12 VDAFLHYLRVELQLSAKTRESYQRQLYTVIVLIDEMGLTEWRQLEVSQVRALAARSKRQG 71 Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +S L+++R W V + + NP V P+ + +++ + Sbjct: 72 LQSASLALRLSALRSFLDWLVSTDALGANPARGVSAPRHGRHLPKNMDVDEVDHLLDIDT 131 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243 + R E + +GLR ++ + ++ + + + Sbjct: 132 RDPLALRDRAMLEVMYGAGLRLAELVGLNCADVDLGGGEVRVVGKGNKERKLPIGATAVT 191 Query: 244 LLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 L ++ + FI N ++++A F K GV + H +R A Sbjct: 192 WLTRWLTLRDRYAPKDDAVFIANSGRRISARNVQKRFAEWGVKQGVNSHIHPHKLRHSFA 251 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 T ++ + G + + YT D L Sbjct: 252 THMLESSGNLRAVQELLGHANLSTTQIYTH-LDFQHLA 288 >gi|16272618|ref|NP_438836.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae Rd KW20] gi|260581486|ref|ZP_05849296.1| tyrosine recombinase XerC [Haemophilus influenzae RdAW] gi|260582981|ref|ZP_05850764.1| tyrosine recombinase XerC [Haemophilus influenzae NT127] gi|1175024|sp|P44818|XERC_HAEIN RecName: Full=Tyrosine recombinase xerC gi|1573676|gb|AAC22336.1| integrase/recombinase (xerC) [Haemophilus influenzae Rd KW20] gi|260091846|gb|EEW75799.1| tyrosine recombinase XerC [Haemophilus influenzae RdAW] gi|260093965|gb|EEW77870.1| tyrosine recombinase XerC [Haemophilus influenzae NT127] Length = 295 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 37/271 (13%), Positives = 88/271 (32%), Gaps = 20/271 (7%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESR 126 ++ Y ++ ++ +++ D I+ D T + I + + + Sbjct: 4 ALNRYWDYLRIERQMSPHTITNYQHQLDATIKILAQQDIHSWTQVTPSVVRFILAESKKQ 63 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 S L+++R + V+Q + +NP + PK+ + E +QQ + Sbjct: 64 GLKEKSLALRLSALRRFLSFLVQQGELKVNPATGISAPKQGRHLPKNMDGEQVQQLLAND 123 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 + R E + SGLR S+ + + + ++ V Sbjct: 124 SKEPIDIRDRAILELMYSSGLRLSELQGLDLNSINTRVREVRVIGKGNKERVVPFGRYAS 183 Query: 243 KLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293 + E F++ +++ + + G+ + + H +R Sbjct: 184 HAIQEWLKVRALFNPKDEALFVSQLGNRISHRAIQKRLETWGIRQGLNSHLNPHKLRHSF 243 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324 AT +A + + G + + YT Sbjct: 244 ATHMLEASSDLRAVQELLGHSNLSTTQIYTH 274 >gi|152976339|ref|YP_001375856.1| phage integrase family protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025091|gb|ABS22861.1| phage integrase family protein [Bacillus cytotoxicus NVH 391-98] Length = 376 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 42/304 (13%), Positives = 96/304 (31%), Gaps = 30/304 (9%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT 129 L+ + + + ++ ++ +++ + GD I + + + Sbjct: 63 FSQLVEIWMQEKE-TTCRPSTLYQYKRILRSRVMPEFGDKKLSNIKPLTVHNFHQKMIKE 121 Query: 130 PSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + + ++ + V E ++ NP +RPK K + WT E F Sbjct: 122 GLTTKYISSVDVMLKQILDKGVELEMISSNPAKKAKRPKVKKKAQASWTIEQAMTFIDCA 181 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----------------G 230 +AF L++G+R + + +I Q+T Sbjct: 182 KLKGSYYIAFVLALHTGMRIGEVLALQWGDIDFEKKTIHVQRTLTLVDGKYVLGETKTEA 241 Query: 231 TIITVELPDGFMKLLAMTPIGKETFF-----INNDKQKMNATQFSIWFKAKATKAGVNK- 284 + + + + + L K+ +K+ ++ KA V Sbjct: 242 SNRVIPMTEELVDELVEYQKYKKENPLDLLICTRNKKIVHPYTIRYQMKALCEAIDVPYI 301 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQ-AETYTKGADRIRLGIKNSRRISSVV 343 H +R+ TI D+ A + G V YT + + I+ + ++ + + Sbjct: 302 RFHDIRRTFTTILIDSNVNAKVVAKLLGHTNVSTSLNIYTDVYEERQ--IEAAEKLQNAL 359 Query: 344 DSDD 347 S Sbjct: 360 KSGR 363 >gi|149195410|ref|ZP_01872494.1| Integrase [Caminibacter mediatlanticus TB-2] gi|149134460|gb|EDM22952.1| Integrase [Caminibacter mediatlanticus TB-2] Length = 315 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 45/303 (14%), Positives = 98/303 (32%), Gaps = 36/303 (11%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK--------SGDFDYRKITTKHIRSG 122 L++ ++E K + + N+ +F++ ++ I D D++ I++ Sbjct: 13 LEFWLNEAIKDRKLLNQSENTIYTFKNSIEKFIEFCYLERINDYPDLDFKDFNKYFIKNY 72 Query: 123 V---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + + + PSS L + FK+ ++ +++ K E +T + Sbjct: 73 ISYLKDLNYKPSSINTHLKYLYAFFKFISENNEDGVDLLYKLDKIFLKEEKNVIYTFSNE 132 Query: 180 ---------QQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSI---- 224 + + R AF L +G R S+ ++ N Sbjct: 133 ELEKIQLALINKLNLTKSYTTFRNAFIVYLLSLTGARVSEIINLKNDDIKENGEFFYLKL 192 Query: 225 -------KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277 + ++ + +L I E F + K T + K Sbjct: 193 TGKGNKERIVPIEKDYIIDFLEKLQELKDKDNINSEYFLPDKQGYKTAITSIQSFNKTLL 252 Query: 278 TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNS 336 G+ + H R ATI + G + + G ++ Y K D+ + + Sbjct: 253 KNLGIKGNIHQYRHTFATILLEKGVDINTIKELLGHSSIQTTASYYAKVTDKAK--QEAI 310 Query: 337 RRI 339 R++ Sbjct: 311 RKL 313 >gi|307316349|ref|ZP_07595793.1| integrase family protein [Sinorhizobium meliloti AK83] gi|306898189|gb|EFN28931.1| integrase family protein [Sinorhizobium meliloti AK83] Length = 330 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 38/285 (13%), Positives = 78/285 (27%), Gaps = 30/285 (10%) Query: 76 SEYRKS-AHWGSLAVNSRISFESYFDQIIRKS-GDF-------DYRKITTKHIRSGVESR 126 + S A L+ + ++E Q + G D + +R + R Sbjct: 36 RRWLASLAEERRLSEKTVDAYERDTRQFLTFLTGHLAGPPRLSDICALRPADLRGFLAQR 95 Query: 127 KHTPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + + A L +R ++ R +V PK+ + T + + Sbjct: 96 RKGGAGARTLGRGLAGLRSFLRYLERNGLANAAGAGAVRSPKQPKSLPKALTDREALKVV 155 Query: 184 SF-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITV 235 + ++ L GLR +++ + S++ G V Sbjct: 156 TADAQLAEEPWIAARNAAVLTLLYGCGLRIAEALDLIPADFSGPVTSLRVTGKGGKTRIV 215 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-------FSIWFKAKATKAGVN--KSA 286 + + + + A + G+ + Sbjct: 216 PMIAAAAEAVETYRKLCPYHIEPEEPIFRGARGAKLQPAIIQREMQKLRAALGLPDSATP 275 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 H +R AT G + G ++ + YT G D RL Sbjct: 276 HALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYT-GVDSARL 319 >gi|295133019|ref|YP_003583695.1| tyrosine recombinase XerC [Zunongwangia profunda SM-A87] gi|294981034|gb|ADF51499.1| tyrosine recombinase XerC [Zunongwangia profunda SM-A87] Length = 297 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 41/264 (15%), Positives = 93/264 (35%), Gaps = 24/264 (9%) Query: 85 GSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFL 137 + ++++ ++E+ + ++ + D + + IR+ + S + S + + Sbjct: 14 KNYSLHTLKAYEADLLSFHEFLLAEFECSDLKNVDYAQIRNWIVSLSESGVSNRSINRKI 73 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK----EDMQQFKSFWSEGSQPR 193 +S++ + + + ++I+P K + P++K + + EG + + Sbjct: 74 SSLKSYYYFLQKVGELSISPLQKHRPLKMAKKLQVPFSKVEVATVINDIDTDSFEGIRDK 133 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIIT----------VELPDGFM 242 E +GLR + G+ L K +EL Sbjct: 134 AIIELFYSAGLRRIELINLGINDLDLARLNIKVLGKRNKERYLPLLKSVAKTIELYIEQR 193 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSAHGVRKFSATISADA 300 + FI++ KM+ + +K A V KS H +R AT + Sbjct: 194 SHIVPDTAKTSRLFISSKGDKMSESLVYRIINTYFSKVSAKVKKSPHILRHSFATHLLNE 253 Query: 301 GATAHELMATYGWKTVDQAETYTK 324 GA + + G ++ + YT Sbjct: 254 GANLNAVKELLGHSSLAATQIYTH 277 >gi|120435311|ref|YP_860997.1| phage integrase family protein [Gramella forsetii KT0803] gi|117577461|emb|CAL65930.1| phage integrase family protein [Gramella forsetii KT0803] Length = 385 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 41/268 (15%), Positives = 86/268 (32%), Gaps = 12/268 (4%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI-RSGVESRKHTPSSA 133 I+ YR + ++ ++ ++ ++ ++ + + R S Sbjct: 93 INAYRVYMKGLRYSQSTIKTYCTFTEKFLKFHNYK--TTFSQNDVSRFMEAEIALKSYSI 150 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193 + L K A + RPK+ +KE++ + + R Sbjct: 151 SSHRQCISAL-KHYFEFSDQAEFEISELVRPKKSRFLPTVLSKEEIIDLL-RLTRNLKHR 208 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVELPDGFMKLLAMTPIG 251 + SGLR + ++ + + I K K V L + F+ LL Sbjct: 209 CILALIYSSGLRVGELINLHLKDIDIDRKQILIKQAKGRKDRYVMLAESFLPLLYNYLQT 268 Query: 252 KETFFIN---NDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHE 306 E D +K +++ + K +A + + H +R AT + G Sbjct: 269 YEPKRYFTEGYDNKKYSSSAIRSFLKDSCRRAKISKKVTPHTLRHSFATHMLENGTDLRY 328 Query: 307 LMATYGWKTVDQAETYTKGADRIRLGIK 334 + G + YT A + + I+ Sbjct: 329 IQELLGHSKPETTMIYTHVAKKDLMKIQ 356 >gi|301169393|emb|CBW28993.1| site-specific tyrosine recombinase [Haemophilus influenzae 10810] Length = 295 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 37/271 (13%), Positives = 88/271 (32%), Gaps = 20/271 (7%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESR 126 ++ Y ++ ++ +++ D I+ D T + I + + + Sbjct: 4 ALNRYWDYLRIERQMSPHTITNYQHQLDATIKILAQQDIHSWTQVTPSVVRFILAESKKQ 63 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 S L+++R + V+Q + +NP + PK+ + E +QQ + Sbjct: 64 GLKEKSLALRLSALRRFLSFLVQQGELKVNPATGISAPKQGRHLPKNMDGEQIQQLLAND 123 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 + R E + SGLR S+ + + + ++ V Sbjct: 124 SKEPIDIRDRAILELMYSSGLRLSELQGLDLNSINTRVREVRVIGKGNKERVVPFGRYAS 183 Query: 243 KLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293 + E F++ +++ + + G+ + + H +R Sbjct: 184 HAIQEWLKVRALFNPKDEALFVSQLGNRISHRAIQKRLETWGIRQGLNSHLNPHKLRHSF 243 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324 AT +A + + G + + YT Sbjct: 244 ATHMLEASSDLRAVQELLGHSNLSTTQIYTH 274 >gi|311739716|ref|ZP_07713551.1| tyrosine recombinase XerD [Corynebacterium pseudogenitalium ATCC 33035] gi|311305532|gb|EFQ81600.1| tyrosine recombinase XerD [Corynebacterium pseudogenitalium ATCC 33035] Length = 305 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 44/312 (14%), Positives = 92/312 (29%), Gaps = 31/312 (9%) Query: 57 KREYINSPRKKPTTLKWLISEYRK-SAHWGSLAVNSRISFESYFDQII---RKSGDFDYR 112 + K + I ++ H A + + + + +FD Sbjct: 3 EDGKSAKAPKVEGQMAEAIEDFADFQLHVRGRAEATVRGYRADLRDLARSVPTFAEFDLN 62 Query: 113 KITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 + + E + + S+ + + + WAVR+ ++ + + PK Sbjct: 63 SLRQWLAEAVTEGK--SRSTLARRTAAAKGFSTWAVREGHLKRDVAARLVTPKVGRHLPT 120 Query: 173 PWTKEDMQQFKSFWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKT 226 E + + E L SG+R ++ R + + + T Sbjct: 121 VLAPEQAGELMGNAVSADEVHFLRDSAILELLYASGMRVAELVRLDLGDIDFQRGTLHVT 180 Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETF---------FINNDKQKMNATQFSIWFKAKA 277 K V L F+ + +++ Q + A Sbjct: 181 GKGNKQRVVPFGHAAEDALKQWIDKGRGEIASAETEAVFVGSRGGRIDQRQVRRIVEKAA 240 Query: 278 TKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 G + HGVR +AT + GA + G +++ + YT + + Sbjct: 241 KVTGAQGLTPHGVRHSAATHLLEGGADLRVVQELLGHSSLNTTQIYTHVS---------A 291 Query: 337 RRISSVVDSDDP 348 +R+ V D P Sbjct: 292 QRLQRVYDQAHP 303 >gi|92116157|ref|YP_575886.1| site-specific tyrosine recombinase XerC [Nitrobacter hamburgensis X14] gi|91799051|gb|ABE61426.1| tyrosine recombinase XerC subunit [Nitrobacter hamburgensis X14] Length = 300 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 36/288 (12%), Positives = 85/288 (29%), Gaps = 34/288 (11%) Query: 77 EYRKSAHW-GSLAVNSRISFESYFDQ----IIRKSGD----FDYRKITTKHIRSGVESRK 127 + L+ + ++ Q + + G+ + + +R+ + +R+ Sbjct: 3 RWLSHLRAERRLSPKTCEAYARDARQCLMFLSQHWGELVTLKRFAALEASDVRAFMAARR 62 Query: 128 ---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 S ++ L +R ++ R+ + ++ PK +P ++F Sbjct: 63 ADDIGGRSLMRALAGLRSFARFLEREGLGKVGALSAIRAPKVGKSLPKPIQMSAAKRFAD 122 Query: 185 FWSEGSQPRLAFEFL---------LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 + R + + SGLR S++ + + TG Sbjct: 123 ASERAGEDREPWIWARDAAVMALLYGSGLRISEALGLKRRDVPQPGAGDVLVVTGKGNKT 182 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQ----------KMNATQFSIWFKAKATKAGVN-- 283 + +LA+ + + ++ + G+ Sbjct: 183 RMVPVLQNVLALVHEYVAVCPHSLPPEGPIFVGARGGPLSPRIIQLTMARMRGALGLPDS 242 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 + H +R AT G + G ++ + YT G D RL Sbjct: 243 ATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQIYT-GIDSERL 289 >gi|163939178|ref|YP_001644062.1| integrase family protein [Bacillus weihenstephanensis KBAB4] gi|163861375|gb|ABY42434.1| integrase family protein [Bacillus weihenstephanensis KBAB4] Length = 370 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 56/371 (15%), Positives = 113/371 (30%), Gaps = 44/371 (11%) Query: 12 TKERTRHGKIIYYFRKG----HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67 K+ + GK Y G GRR + T A ALT + Sbjct: 5 VKKNKKTGKYFYIVDIGIDPLTGRRKQKKKRGFITKKEAEN-ALTKLLSEVHTGTYVEPS 63 Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR 126 + + + + S+ + + + Y + +II G+ K+T+ H+++ V S Sbjct: 64 KLLYGEYLESWFNTKKY-SVGIQTAKVLKGYLNSRIIPSLGNIKLAKLTSLHMQNYVNSL 122 Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + + + + +R + A+ E + N + PK E + W + ++Q F Sbjct: 123 RDEGLKRGTIEKIIKLIRNSLEHAIDLELITKNVAAKTKLPKADKEELTVWNEHEVQFFL 182 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------- 232 S+ + F L +G+R + + + + +T + Sbjct: 183 KAAQ-DSRYSIVFHMALVTGMREGELLGFRWKDVDLEKGHLTISQTLSHDGKTFLLGGKT 241 Query: 233 ----ITVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFK 274 + LP + L + +N Sbjct: 242 KSSLRKILLPASTVAKLKKHRAVVLKEKLSQGEEYQDNDLVMCTPSGTPINPANVRRSLN 301 Query: 275 AKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLG 332 A K V K H +R AT+ G + G + +TY+ + Sbjct: 302 ALIKKVAVPKIRFHDLRHTHATLLLAKGVNVKVISERLGHSNIKITLDTYSHVLPT--MQ 359 Query: 333 IKNSRRISSVV 343 +I ++ Sbjct: 360 EDAVNKIEEIL 370 >gi|255692176|ref|ZP_05415851.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM 17565] gi|299146444|ref|ZP_07039512.1| putative tyrosine recombinase [Bacteroides sp. 3_1_23] gi|260622041|gb|EEX44912.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM 17565] gi|298516935|gb|EFI40816.1| putative tyrosine recombinase [Bacteroides sp. 3_1_23] Length = 383 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 31/264 (11%), Positives = 80/264 (30%), Gaps = 15/264 (5%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI----RSGVESRKHTPSSA 133 Y + ++++ +++ YF + D +T + I V+ + + + Sbjct: 111 YLELLEQKRYSLSTIKAYKIYFSDFMEYHKGHDLDLLTVEDINSYMLHMVKEKHISATQQ 170 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193 + +++ ++ + + ++E+M+ + R Sbjct: 171 NMRINAIKFYYEKVRKGRRQYYGGIARAKE---YKALPEVLSREEMKS-IFAQLPNRKHR 226 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----ELPDGFMKLLAMT 248 + +GLR S+ + + + I+ G +L + Sbjct: 227 CMISLIYSAGLRRSELLNLTPKDIISERMLIRIAGKGKKCRYSLLSEKLLNELRAYYREY 286 Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHE 306 K F ++ + + K A KAG+ H +R AT + G Sbjct: 287 RPQKWLFEGEQSGEQYSPSALVKVLKEAARKAGIKHRVHLHMLRHTFATHLLEQGTDLRT 346 Query: 307 LMATYGWKTVDQAETYTKGADRIR 330 + G + Y ++ + Sbjct: 347 IQELMGHTDIKTTAIYLHVSNAHK 370 >gi|56419747|ref|YP_147065.1| site-specific tyrosine recombinase XerC [Geobacillus kaustophilus HTA426] gi|56379589|dbj|BAD75497.1| integrase/recombinase [Geobacillus kaustophilus HTA426] Length = 289 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 43/280 (15%), Positives = 89/280 (31%), Gaps = 28/280 (10%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR---KHTP 130 EY + + + + + + +Q R G +++ +R + + Sbjct: 2 EYLQIE--KNYSQYTIVCYRRDIEQFFRFMDEEGIGALNEVSYSDVRLYLTKLYEQQLAS 59 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 S + ++S+R +K+ +R+ A NP PK++ + ++++ E + Sbjct: 60 RSVARKISSLRSFYKFLLREGRAAENPFALATLPKKEQKIPNFLYPKELEALFLVNDENT 119 Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKLL 245 + E L +G R S+ C + + ++ K V + L Sbjct: 120 ALGQRNAALLELLYATGARVSECCHIQLSDVDFVAETVLIHGKGNKQRYVPFGRPAREAL 179 Query: 246 AMTPIG------------KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRK 291 F+N + A + N S H +R Sbjct: 180 ERYIHRGRRELTRKLPADHRYLFVNARGNPLTPRGVRHILDRIVEAAALTQNISPHVLRH 239 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330 AT + GA + G + + YT DR+R Sbjct: 240 TFATHLLNEGADLRSVQELLGHAHLSSTQVYTHVTKDRLR 279 >gi|313123990|ref|YP_004034249.1| integrase [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280553|gb|ADQ61272.1| Putative integrase [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 370 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 48/357 (13%), Positives = 116/357 (32%), Gaps = 35/357 (9%) Query: 14 ERTRHGKIIYYFRKGH---GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP-T 69 ++ + GK +Y R G+ R+ A A K I+ R + Sbjct: 10 KKMKSGKYQWYQRYRDPLTGKIKRVTCLLSRGSQQARKEAELILARKLADISDARTETNI 69 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVES--R 126 T+ L + + + + +++ G+ K IT + ++S + Sbjct: 70 TIGELSKLFLDHERERGVKPTTLSVRRTGMSAMLKYFGEDAIAKNITKPMVTKYLQSSLK 129 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS---VERPKRKTEGIRPWTKEDMQQFK 183 K T S+ + M ++ +A+ Y+ NP +P++ T + ++ Sbjct: 130 KKTNSTVHVYRVGMSTMYDFAIDYGYLTENPAKGLRIQWKPQKPTSITDKYFTDEELNNL 189 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------- 232 + F+F+ +G+R ++ +++ + I Sbjct: 190 FAVIDRPDYLRLFKFMYLTGMRFGEATGLQFKNIHDQYADITGTMWANGIKSDSPKTLAS 249 Query: 233 -ITVELPDGFMKLLAMTPIGKETFFINND-------KQKMNATQFSIWFKAKATKAGVNK 284 +V LP ++++ ++ +++ K K+ +AG+++ Sbjct: 250 FRSVFLPKQAVEIIKWFKQYDRNTEPDDFIFINQLKHVPFKMNTVALYLKNKSREAGIDR 309 Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRR 338 + H R + A+ G H + G + E Y + + + Sbjct: 310 KITTHFFRHTHISKLAEQGVPLHVIQKRVGHTKAETTREIYLHVT---KKMQEEMEK 363 >gi|308448796|ref|XP_003087755.1| hypothetical protein CRE_30625 [Caenorhabditis remanei] gi|308253057|gb|EFO97009.1| hypothetical protein CRE_30625 [Caenorhabditis remanei] Length = 543 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 47/287 (16%), Positives = 90/287 (31%), Gaps = 28/287 (9%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR---- 126 L+S + K + +V++ ++ I D + +++ +R V R Sbjct: 241 QLLSMWIKDRKIQNQSVHTLDAYFRDVSNFIDFCYDKQIELKQVEAADLREYVAYRVEKD 300 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + + SS + LTS+R KWA + Y+ IN + ++ E + Q Sbjct: 301 QLSTSSLQRHLTSIRQFMKWAKQGGYLEINAADDFQIKRQARPLPGMIDIETVNQIMDQP 360 Query: 187 --------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVEL 237 + + E L SGLR ++ ++ + ++ V Sbjct: 361 EPEKPIEKQLWLRDKAILELLYSSGLRLAEVQSLAIRDIDFTRHLLRITGKGNKTRIVPF 420 Query: 238 PDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--NKS 285 L + FI ++ Q K +A +AGV + Sbjct: 421 GSKARDSLIEWLKIYRIWQGEFSPESLVFITQRGTSISPRQIENRVKYQALRAGVNVDLH 480 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R A+ + G + + YT D L Sbjct: 481 PHLLRHCFASHMLSNSGDLRAVQEMLGHSNLTTTQIYTH-VDFDHLA 526 >gi|302134313|ref|ZP_07260303.1| putative bacteriophage integrase [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 363 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 44/325 (13%), Positives = 88/325 (27%), Gaps = 21/325 (6%) Query: 17 RHGKIIY-YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75 + GK + F G IR + A P + ++ Sbjct: 4 KRGKTWWISFTAADGTYIR-RSAGTEDYAAAKAIEQEHRGAAWRQKELGVDPPRMFEEVM 62 Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG---VESRKHTPSS 132 EY A + + + ++ G + K IR + ++ Sbjct: 63 IEYLDHARQTQRSFAT-TQYR--VKALLEHFGGRVMNDLAGKDIRKYSSLRMKAGKSAAT 119 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM---QQFKSFWSEG 189 + L ++ W + + + + +R T+ ++ + G Sbjct: 120 VNRELAALSAAINWCAVELEWKLPNPVKGRTLREAESRVRWLTRAEVESLCREARRQRGG 179 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPDGFMKLL 245 + +G R ++ + + I K G ++ L +G M L Sbjct: 180 DMLEAFIRLAVNTGCRKNELVGLEWRRVDIANRLIYLEGANTKAGKRRSIPLNEGAMAAL 239 Query: 246 AMTPIGKETFFINNDKQKMNATQ-----FSIWFKAKATKAGV-NKSAHGVRKFSATISAD 299 + + + S F +AG+ + H +R A A Sbjct: 240 KGRMEFRAEHNPASPWVFIRKNGDKVLDLSEGFNGACDRAGIKDFVIHDLRHTCAAWLAT 299 Query: 300 AGATAHELMATYGWKTVDQAETYTK 324 AG E+ G T E Y Sbjct: 300 AGVPLIEIRDLLGHSTTQMTEKYAH 324 >gi|220921956|ref|YP_002497257.1| integrase family protein [Methylobacterium nodulans ORS 2060] gi|219946562|gb|ACL56954.1| integrase family protein [Methylobacterium nodulans ORS 2060] Length = 353 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 63/332 (18%), Positives = 113/332 (34%), Gaps = 21/332 (6%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 P V ++ G Y R R + A + + PK +++P Sbjct: 7 PGVKVYVSK-GITYAYDRASGERLTPPHEIGTPGWWTALQAIRAKAKPK------VKEEP 59 Query: 69 TTLKWLISEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGDFDYRKITTKHI--RSGVES 125 T L+ YR S + + LA +R +++ D + K D T + Sbjct: 60 GTWGALVISYRSSPRFLNDLAPRTRADYQTVLDHL-GKLHDRPISAWTRGFVAGLRDEAQ 118 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 +K A L+ + V+F + +E + NP V++ +R R +++ + Sbjct: 119 KKKGRRFANYVLSVVSVVFAHGIEREMASTNPVRDVKKLRRPKGAPRANRPWSPEEWDAV 178 Query: 186 WSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--IKTQKTGTIITVELPDGFM 242 + S R A G R ++ A + + K+G + V+ P+ Sbjct: 179 VAAASPELRAAIMLGGVLGYRQGEALSAKRDSWNRAAGTLSRISAKSGKPVKVQAPEIVA 238 Query: 243 KLLAMTPIGKETFF-INNDKQKMNATQFSIWFKAKATKAGVN------KSAHGVRKFSAT 295 + LA P T +N+ Q F F + HG+R +AT Sbjct: 239 QALAALPSHSATTLLVNSRGQPWKEDGFRGSFFRLIRTLEAEGKIADGLTFHGLRHTAAT 298 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGAD 327 G + G +T A Y++ AD Sbjct: 299 QMRQLGFDTRTIADMLGQETEGMAAHYSREAD 330 >gi|310816227|ref|YP_003964191.1| site-specific tyrosine recombinase XerC [Ketogulonicigenium vulgare Y25] gi|308754962|gb|ADO42891.1| site-specific tyrosine recombinase XerC [Ketogulonicigenium vulgare Y25] Length = 307 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 39/290 (13%), Positives = 81/290 (27%), Gaps = 29/290 (10%) Query: 71 LKWLISEYR-KSAHWGSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRS 121 L + + S A + +++ + G +I +R+ Sbjct: 6 LADALDRWLVHSGAIEGKAGATLVAYRHDVSTFLTFMTLHHGGPQGFAAIAQIEVADMRA 65 Query: 122 GVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + T S + L++++ + W +E L+ PK + RP +D Sbjct: 66 WMAQMRGTGLSSRSLARALSAVKGFYTWLAAREGFEPTAVLAARAPKFQRNLPRPLEVDD 125 Query: 179 MQQFKSF-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 ++ ++ L SGLR S++ + T K G Sbjct: 126 ARRLMDRVEVQSNEPWVAARDLAVITLLYGSGLRISEALSLTGEDYPLPDVLRMTGKGGK 185 Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKM-------NATQFSIWFKAKATKAGVNK 284 V + + + + + + G+ Sbjct: 186 QRLVPVLPIAAAAVKDYVRRTPYAPVAGAPLFRGVRGGALSPRIIQKMIEQVRLQLGLPA 245 Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 + H +R AT AG + G ++ + YT D L Sbjct: 246 SATPHALRHSFATHLLAAGGDLRSIQELLGHASLSTTQAYT-AVDAAHLM 294 >gi|316931849|ref|YP_004106831.1| integrase family protein [Rhodopseudomonas palustris DX-1] gi|315599563|gb|ADU42098.1| integrase family protein [Rhodopseudomonas palustris DX-1] Length = 323 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 35/290 (12%), Positives = 83/290 (28%), Gaps = 34/290 (11%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRSGVES 125 ++++ L+ + ++ Q ++ + ++ +R+ + + Sbjct: 24 MAKWLSHLRAERRLSGKTLEAYARDVRQFLQFLAGHWGGEVTLGRFARLEATDVRAFMAA 83 Query: 126 RK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK------ 176 R+ S ++ L +R ++ R+ + SV PK + +P Sbjct: 84 RRADDIAGRSLMRALAGLRSFGRFLEREGKGRVGALASVRAPKIRKSLPKPLPIAAAKRL 143 Query: 177 ---EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233 ++ + + L SGLR S++ + + G Sbjct: 144 ADADERAGEERETWVLIRDAAVMALLYGSGLRISEALGLKRRDVPAPGKGDTLIVHGKGN 203 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQ----------KMNATQFSIWFKAKATKAGVN 283 + +L N ++ + + G+ Sbjct: 204 KTRMVPVLQNVLEQIAEYAAACPYNLPPDGPMFVGARGGPLSPRIIQLAMERLRGGLGLP 263 Query: 284 --KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 + H +R AT G + G ++ + YT G D RL Sbjct: 264 DSATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQVYT-GIDTERL 312 >gi|148559918|ref|YP_001259740.1| site-specific tyrosine recombinase XerC [Brucella ovis ATCC 25840] gi|148371175|gb|ABQ61154.1| tyrosine recombinase XerC [Brucella ovis ATCC 25840] Length = 315 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 46/293 (15%), Positives = 86/293 (29%), Gaps = 35/293 (11%) Query: 71 LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS-------------GDFDYRKITT 116 L E+ KS L+ N+ I++E Q ++ G+ + + Sbjct: 15 LAAAREEWLKSLKTMRRLSDNTLIAYERDTRQFLQFLTGHLGEPPSLKEIGNLRIADLRS 74 Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + + + L +R L + ++ V ++ P++ +P T Sbjct: 75 FLANRRND--GAGARTLGRGLAGVRSLLRHLEKRGLVNAAGASAMRAPRQPKSLPKPLTA 132 Query: 177 EDMQ-------QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQ 227 +D + Q ++ L GLR S++ L + T Sbjct: 133 DDARRVVSADGQMAEEPWIAARNAAVLTLLYGCGLRISEALGLSGDALSDPSARSMTITG 192 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKA 280 K V L K +A F ++A + Sbjct: 193 KGSKTRLVPLLPAVHKAVAQYRALCPFDLSAGQPLFRGAKGGPLHAAIIQREMQKLRAGL 252 Query: 281 GVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 G+ + H +R AT G + G ++ + YT G D RL Sbjct: 253 GLPDSATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYT-GIDTQRL 304 >gi|258542904|ref|YP_003188337.1| site-specific tyrosine recombinase XerC [Acetobacter pasteurianus IFO 3283-01] gi|256633982|dbj|BAH99957.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO 3283-01] gi|256637042|dbj|BAI03011.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO 3283-03] gi|256640094|dbj|BAI06056.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO 3283-07] gi|256643151|dbj|BAI09106.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO 3283-22] gi|256646206|dbj|BAI12154.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO 3283-26] gi|256649258|dbj|BAI15199.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO 3283-32] gi|256652245|dbj|BAI18179.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655302|dbj|BAI21229.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO 3283-12] Length = 315 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 43/304 (14%), Positives = 89/304 (29%), Gaps = 42/304 (13%) Query: 69 TTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRK-------------SGDFDYRKI 114 T + + ++ + + + +++ + + G R Sbjct: 1 MTAEEAVQKFLEWMAVEKQASPLTIEAYQGDLARFLGFMTTHLDGLPDMIGLGLISLRDF 60 Query: 115 TTKHIRSGVESRKHTPS---------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165 E+ K T + + ++++R FK+ R++ V + P+ Sbjct: 61 RAWLAYEQAEASKPTARKTSSDQATRTRARRVSAVRSFFKYLARRQGVENPAIQLLSTPR 120 Query: 166 RKTEGIRPWTKED-------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218 K RP K+ + E + F L GLR S++ + L Sbjct: 121 TKKPLPRPLAKDQALAAPEDISDLAHTPMEQQRDAALFLLLYGCGLRISEALNLNIADLD 180 Query: 219 NNIFSIKTQ---KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ------KMNATQF 269 S + K G V + + L + ++ Sbjct: 181 VMRSSNVLRILGKGGKERLVPVLPVVQQALEAWRTRHPAPTPDAPLFVGVRGKRLQPAIA 240 Query: 270 SIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 + +G+ + H +R AT + GA + G ++ + YT AD Sbjct: 241 QKAMREWRHLSGLPDYVTPHALRHSFATHLMEGGADLRVIQELLGHASLSTTQRYT-LAD 299 Query: 328 RIRL 331 RL Sbjct: 300 EARL 303 >gi|229162527|ref|ZP_04290488.1| hypothetical protein bcere0009_32990 [Bacillus cereus R309803] gi|228621006|gb|EEK77871.1| hypothetical protein bcere0009_32990 [Bacillus cereus R309803] Length = 304 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 47/290 (16%), Positives = 89/290 (30%), Gaps = 24/290 (8%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESR 126 L+ +I EY + + Q+ R G + I H++ V ++ Sbjct: 3 LEDVIEEYLYHCLAKGFTPKTMKNKRQEMKQLKRFLMDEKGISELEDINPLHLKQYVRTK 62 Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE----DM 179 P S + +R F W ++EY+ N VE PK + ++ +T + + Sbjct: 63 HKEGLQPQSIVSMFKMVRAFFSWCQKEEYLKGNIAKKVELPKVPKKLLKGFTIQEVSAMI 122 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------NNIFSIKTQKT 229 F ++ + L GLR + Q+++ N + Sbjct: 123 DAFSYKNYIEARNKAIVAMLSDCGLRAMEVRGLLTQNVKETTILVNGKGNKERIMFISPP 182 Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSA 286 I + + L + + +F++ ++ K + V S Sbjct: 183 LKKILIRYERLRKQYLKDKIVKTDNYFLSYTADPLSHMGIYNVIKEAGKRVEVEEVRCSP 242 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 H R F A G L G V + Y + + L K Sbjct: 243 HTFRHFFAVQCILNGIDIFTLSKLLGHSDVSTTQRYLQSLEDFELIKKAM 292 >gi|282858397|ref|ZP_06267577.1| phage integrase, N-terminal SAM domain protein [Prevotella bivia JCVIHMP010] gi|282588845|gb|EFB93970.1| phage integrase, N-terminal SAM domain protein [Prevotella bivia JCVIHMP010] Length = 290 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 38/273 (13%), Positives = 93/273 (34%), Gaps = 22/273 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESR--- 126 + + ++ + ++ R +FD + I + +R+ VE Sbjct: 2 VDRFLDYLRLEKGYSLKTIDNYRDDLKGFERFYKNFDETLSWESIDSDIVRNWVEFMMDN 61 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-----WTKEDMQQ 181 K +S + L+++R L++++++ +V +P ++ PK+ + + + Sbjct: 62 KAAAASVNRRLSALRSLYRYSLKHGFVEKDPVYGIQGPKKPKSLPQFVKESELDQLLQDE 121 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDG 240 + + R L +G+R + + + + T K + + Sbjct: 122 MWADTYQDLLARTLIVVLYETGMRLGEIVGLNLNSVDFHTSSVKVTGKRNKQRVIPFGEE 181 Query: 241 FMKLLAMTPIGKET------FFINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGVRKF 292 L ++ FF +++N Q K +K ++ H +R Sbjct: 182 LESSLKAYLGKRKAIAGEEAFFTTEKGERVNDYQVRDLVKKNLSKVSTLKKRTPHVLRHS 241 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKG 325 AT + A + G +++ E YT Sbjct: 242 FATAMLNHNAGLESVRKLLGHESLSTTEIYTHT 274 >gi|225028233|ref|ZP_03717425.1| hypothetical protein EUBHAL_02505 [Eubacterium hallii DSM 3353] gi|224954412|gb|EEG35621.1| hypothetical protein EUBHAL_02505 [Eubacterium hallii DSM 3353] Length = 303 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 38/284 (13%), Positives = 94/284 (33%), Gaps = 27/284 (9%) Query: 71 LKWLISEYRKSAHWGS-LAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVESRKH 128 L+ I+ Y + + L N+ ++ Q + G+ ++ ++I + K Sbjct: 3 LQETINMYLEYCEYRKELDWNTLKAYRIDLRQFVEFIEGEEPSKEKIERYITYLHKKYKQ 62 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS-VERPKRKTEGIRPWTKEDMQQFKSFWS 187 + + + S++V + + +E + NP + K + R +E++++ + Sbjct: 63 K--TVKRKIASLKVFYAYLEEEEIIEENPMRRVHTKFKEERVLPRIIPREEIEKLLNCMY 120 Query: 188 EGSQ-----------PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--GTIIT 234 + + E +G R + ++++ I+ I Sbjct: 121 KELRESEKNQRFILRDVAVVEVFFATGARVYEIANIRIENINLESGVIRFMGKGGKERIV 180 Query: 235 VELPDGFMKLLAMTP-------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--S 285 + ++LL FFIN K + + K +A + + + Sbjct: 181 QIGEESVIELLNRYYTENKEEIHACGYFFINKRKSRFTEQSIRLMLKKYTKQAKIERNIT 240 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 H R AT + G + G ++ + Y + + Sbjct: 241 PHMFRHSFATYLIEEGVDISCVQQILGHSSIKTTQIYIHVSSQK 284 >gi|297569003|ref|YP_003690347.1| tyrosine recombinase XerC [Desulfurivibrio alkaliphilus AHT2] gi|296924918|gb|ADH85728.1| tyrosine recombinase XerC [Desulfurivibrio alkaliphilus AHT2] Length = 330 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 39/306 (12%), Positives = 96/306 (31%), Gaps = 52/306 (16%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIR-KSGDFDY---RKITTKHIRSGVES 125 L + + + + ++ S+ D+ G ++ + +R+ V S Sbjct: 6 LAEHVDGFLRWLQVEKGYSPHTVSSYRRDLDEFAALDRGAGPLERVDQLDARRVRAFVYS 65 Query: 126 R--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 ++ SS + L+++R F++ + +A +P +V PK + + +++ Sbjct: 66 LHGRNRSSSVARKLSALRTFFRYLQKNGVIAHDPAAAVAAPKAEGYLPTVLSVDEVFSLL 125 Query: 184 ----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELP 238 + ++ R E L +G+R ++ ++ L ++ + V + Sbjct: 126 EMPGPADTYAARDRAMLELLYSTGMRVAELAALNLEQLDLAEGMVRVRGKGNKERLVPIG 185 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKM---------------------------------- 264 + + +E +++ Sbjct: 186 TPACEAVQAYLPQREVLLRAAKREREEPQEEKPPAPAGGKRSRPARREAAQEQPLLLNAR 245 Query: 265 ----NATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 K A +AG+ S H +R AT + GA + G ++ Sbjct: 246 GGRLTTRSIERLVKLYAERAGIAARVSPHALRHSFATHLLEMGADLRTVQELLGHASLST 305 Query: 319 AETYTK 324 + YT Sbjct: 306 TQRYTH 311 >gi|312115313|ref|YP_004012909.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100] gi|311220442|gb|ADP71810.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100] Length = 334 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 44/301 (14%), Positives = 86/301 (28%), Gaps = 44/301 (14%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTP 130 LI Y + N+ ++ + ++ R + + + + R Sbjct: 16 LIDAYLAMMRAERGASANTVAAYAADLREMSRFLAERGETFAACARADLEAFFSDRAEAG 75 Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +SA + L+ ++ + V ++ +P ++ K + T ++ Sbjct: 76 LLANSAARKLSCLKRFMLFLVAEKMRDDDPARLIDGVKARRVLPMTLTIAEVDLLLDAAH 135 Query: 188 --------------EGSQPRLAFEFLLYSGLRCSDSCR-AGVQHLQNNIFSIKTQKTGTI 232 + E L +GLR S+ L + K G Sbjct: 136 QAAAFGDPQTSSGRRALRLACLLELLYATGLRVSELVGLPRAAFLGDRKMLTVKGKGGRE 195 Query: 233 ITVELPDGFMKLLAMT-------------------PIGKETFFINNDKQKMNATQFSIWF 273 + L +L K F + + +F+ Sbjct: 196 RIIPLNAKARTVLDCWLDALEAAARADGKAGGAGASASKWLFPSWGEDGHLTRQKFAQDL 255 Query: 274 KAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRI 329 KA + G++ S H +R AT D G L G + + YT DR+ Sbjct: 256 KALGARLGIDAERLSPHVLRHAFATHLLDRGVDLRVLQTLLGHADISTTQIYTHVMEDRL 315 Query: 330 R 330 R Sbjct: 316 R 316 >gi|254713666|ref|ZP_05175477.1| site-specific tyrosine recombinase XerC [Brucella ceti M644/93/1] gi|261321407|ref|ZP_05960604.1| tyrosine recombinase xerC [Brucella ceti M644/93/1] gi|261323863|ref|ZP_05963060.1| tyrosine recombinase xerC [Brucella neotomae 5K33] gi|261294097|gb|EEX97593.1| tyrosine recombinase xerC [Brucella ceti M644/93/1] gi|261299843|gb|EEY03340.1| tyrosine recombinase xerC [Brucella neotomae 5K33] Length = 308 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 46/293 (15%), Positives = 86/293 (29%), Gaps = 35/293 (11%) Query: 71 LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS-------------GDFDYRKITT 116 L E+ KS L+ N+ I++E Q ++ G+ + + Sbjct: 8 LAAAREEWLKSLKTMRRLSDNTLIAYERDTRQFLQFLTGHLGEPPSLKEIGNLRIADLRS 67 Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + + + L +R L + ++ V ++ P++ +P T Sbjct: 68 FLANRRND--GAGARTLGRGLAGVRSLLRHLEKRGLVNAAGASAMRAPRQPKSLPKPLTA 125 Query: 177 EDMQ-------QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQ 227 +D + Q ++ L GLR S++ L + T Sbjct: 126 DDARRVVSADGQMAEEPWIAARNAAVLTLLYGCGLRISEALGLSGDALSDPSARSMTITG 185 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKA 280 K V L K +A F ++A + Sbjct: 186 KGSKTRLVPLLPAVHKAVAQYRALCPFDLSAGQPLFRGAKGGPLHAAIIQREMQKLRAGL 245 Query: 281 GVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 G+ + H +R AT G + G ++ + YT G D RL Sbjct: 246 GLPDSATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYT-GVDTQRL 297 >gi|68249255|ref|YP_248367.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae 86-028NP] gi|319775473|ref|YP_004137961.1| site-specific tyrosine recombinase [Haemophilus influenzae F3047] gi|81336341|sp|Q4QMP0|XERC_HAEI8 RecName: Full=Tyrosine recombinase xerC gi|68057454|gb|AAX87707.1| site-specific recombinase XerC [Haemophilus influenzae 86-028NP] gi|317450064|emb|CBY86278.1| site-specific tyrosine recombinase [Haemophilus influenzae F3047] Length = 295 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 37/271 (13%), Positives = 88/271 (32%), Gaps = 20/271 (7%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESR 126 ++ Y ++ ++ +++ D I+ D T + I + + + Sbjct: 4 ALNRYWDYLRIERQMSPHTITNYQHQLDATIKILAQQDIHSWTQVTPSVVRFILAESKKQ 63 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 S L+++R + V+Q + +NP + PK+ + E +QQ + Sbjct: 64 GLKEKSLALRLSALRRFLSFLVQQGELKVNPATGISAPKQGWHLPKNMDGEQIQQLLAND 123 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 + R E + SGLR S+ + + + ++ V Sbjct: 124 SKEPIDIRDRAILELMYSSGLRLSELQGLDLNSINTRVREVRVIGKGNKERVVPFGRYAS 183 Query: 243 KLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293 + E F++ +++ + + G+ + + H +R Sbjct: 184 HAIQEWLKVRALFNPKDEALFVSQLGNRISHRAIQKRLETWGIRQGLNSHLNPHKLRHSF 243 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324 AT +A + + G + + YT Sbjct: 244 ATHMLEASSDLRAVQELLGHSNLSTTQIYTH 274 >gi|251780460|ref|ZP_04823380.1| site-specific recombinase, phage integrase family [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084775|gb|EES50665.1| site-specific recombinase, phage integrase family [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 385 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 55/357 (15%), Positives = 110/357 (30%), Gaps = 53/357 (14%) Query: 24 YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK-SA 82 Y G RR+ A+ A K SP K I ++ Sbjct: 20 YDNTGKRRRVIKQGFRTKKLAEAF--ATQILDKKNHGFVSPTDSDLLFKNFIMKWYDMHT 77 Query: 83 HWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFL 137 L+VN+R + S + +I G++ + I+ +++ + P++ ++L Sbjct: 78 TSLKLSVNTRNDYLSRINTNLIPLLGNYKIKDISIDVVQNFYNTLINEKHLKPTTVKKYL 137 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197 + K+A ++ + P +++ K + I W +E++ F + + + + Sbjct: 138 DILSSCLKYAQSKDLIYKLPTSYIKKVKIQKPKIEYWNQEEVNFFLN-YIKNTYLYTPIF 196 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------------GTIITVELPD 239 + +GLR + C + I + ++ +P Sbjct: 197 IDILTGLRIGELCGLRWCDVDLQNGIITVNHQLIHDKRLKVLLLADLKTSSSHRSITIPK 256 Query: 240 GFMKLL-----AMTPIGKETFFINNDKQKMNATQFSIWFKAKA----------TKAGVNK 284 + L E ++ K S+ F K KA Sbjct: 257 ILIDYLKELKANRQATNTEYVVLDRQDFKYIPRSLSMNFTKKVAKYKKSIDDFKKANEEV 316 Query: 285 ----------SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330 S HG+R AT+ G + G + TYT D ++ Sbjct: 317 PHGYMQLKQISFHGLRHTHATLLIANGENVKVVSERLGHTDIRMTLNTYTHVLDSMK 373 >gi|229136719|ref|ZP_04265374.1| Prophage LambdaBa04, site-specific recombinase, phage integrase [Bacillus cereus BDRD-ST196] gi|228646739|gb|EEL02919.1| Prophage LambdaBa04, site-specific recombinase, phage integrase [Bacillus cereus BDRD-ST196] Length = 378 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 57/378 (15%), Positives = 110/378 (29%), Gaps = 52/378 (13%) Query: 15 RTRHGKIIYYFRKG----HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 R R + G G+R + T A +A T T E K T Sbjct: 6 RKRGNTWSFTIDIGINPTTGKRQQKSKSGFRTKKEAQHAAATMITEI-EKGIYFDDKQLT 64 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVESR 126 + + + K L S+E I+ + I I+S Sbjct: 65 VLDVWEK-LKPLRKAELK---ITSYEKDMSLVRLYILPPFSYKKIKSIKPVMIQSYYAEL 120 Query: 127 KHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 K + +R +FK AV E + N V++P+ + ++ W+ E+ +F Sbjct: 121 KEKGLSNGTISNIHRCLRCIFKHAVEWEIIHDNIMNKVKKPREEQGEMKTWSSEECNRFL 180 Query: 184 SFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--------------------- 221 + E + + F +Y+G+R + + + + Sbjct: 181 QYLKEKNIKYHMFFLLAIYTGMRRGELLALTWKDIDFDNKRILVNKSLVKTEKGLFKAAT 240 Query: 222 ----------FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271 S F + F N ++ Sbjct: 241 KTKSSNRSISISSFVIGKLQSYYSYKKKEFFRWGIHLNEEAYIFTGNTIHSPLHIDAPHR 300 Query: 272 WFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRI 329 + KAGV + H +R AT+ AG + G ++ + Y+ Sbjct: 301 FLNDHYKKAGVPRIRIHDLRHTHATLMLQAGEHPKIVQDRLGHSSIQMTLDKYSHITQN- 359 Query: 330 RLGIKNSRRISSVVDSDD 347 + + + S++ S++ Sbjct: 360 -MQQQAAENFESIIKSNE 376 >gi|86283512|gb|ABC92575.1| tyrosine site-specific integrase/recombinase protein [Rhizobium etli CFN 42] Length = 383 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 41/290 (14%), Positives = 83/290 (28%), Gaps = 35/290 (12%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRKH 128 + + + A N+ S+E D + + + + Sbjct: 75 VESFLEMMSAERGAAANTLQSYERDLDDVRSFLNGRSIRLTEAASADLAAYLASLARQGF 134 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI---------RPWTKEDM 179 PSS + L +MR +K+ + +P ++ PK+ R ++ Sbjct: 135 KPSSQARRLAAMRQFYKFLYAEGLRTDDPTGVLDAPKKGRPLPKTMGVEEVGRLLSQAQT 194 Query: 180 QQFKSFWSEGSQPRLAF--EFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVE 236 + + + R+ E L +G+R S+ + L + K V Sbjct: 195 EADDPAPGQLQRRRMLALLELLYATGMRVSELVSLPARVLDQEGRFLMIRGKGNKERLVP 254 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNA--------------TQFSIWFKAKATKAGV 282 L + L + + + F+ K A +AG+ Sbjct: 255 LSHSAIAALKSYGRLLAADAAAAKEPQESPWLFPAASKEGYLPRQVFARDLKNLAIRAGL 314 Query: 283 N---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 S H +R A+ GA + G + + YT + Sbjct: 315 TPSLISPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEER 364 >gi|42524456|ref|NP_969836.1| site-specific recombinase [Bdellovibrio bacteriovorus HD100] gi|39576665|emb|CAE80829.1| site-specific recombinase [Bdellovibrio bacteriovorus HD100] Length = 294 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 40/292 (13%), Positives = 98/292 (33%), Gaps = 23/292 (7%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIR-----SGV 123 L I +Y K + S + + + Q + + I+ + + Sbjct: 7 LSENIDKYLKYMTFIKSASPLTIKHYSLDLMQAFNYEDPSVKAKSISESELLSTARAAFN 66 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + + +S + +++ F WA + + + + PK + + ++ Sbjct: 67 QWAHLSLASRNRKAATLKSFFSWAFEESLTEKDLSVQITCPKVPKKLPHFVSVDEALSVL 126 Query: 184 SFWSEGSQ----PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELP 238 + ++ ++ F L GLR S++C +Q + ++ + V LP Sbjct: 127 KSFDSETKIPLKEKVLFLLLYGGGLRVSEACNLKWSEVQTSQKVLRVKGKGSKERVVALP 186 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296 +++L ++ +N+ + +AG+ H +R AT Sbjct: 187 SLTVEVLLKWKKESSFDEYVFGEKPLNSRTAYEMVRQSGIRAGLLKPLHPHALRHSFATH 246 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 +GA L G +++ E YT +++ +++ P Sbjct: 247 LLSSGANLRTLQELLGHESLQATEKYTHL---------GIDQLARTMENLHP 289 >gi|300787863|ref|YP_003768154.1| integrase/recombinase XerD [Amycolatopsis mediterranei U32] gi|299797377|gb|ADJ47752.1| integrase/recombinase XerD [Amycolatopsis mediterranei U32] Length = 310 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 47/282 (16%), Positives = 89/282 (31%), Gaps = 30/282 (10%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRK 127 +I+ Y A N+ S+ + G +T+ H+ + + + Sbjct: 9 ADVIAAYLDHLVVERGTARNTLDSYARDLRRYAAHLDGLGVAKIADVTSAHVTAFGAALR 68 Query: 128 HT--------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 SSA + L ++R L K+A + NP V P + +D+ Sbjct: 69 EGDDEHRPLAASSAARALVAVRGLHKFAHAEGLTEHNPAREVRPPTPAKRLPKALPVDDV 128 Query: 180 QQFKSFWSEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIIT 234 + + R E L +G R S++ V + ++ K G Sbjct: 129 LRLLETPPPDGERALRDRALLELLYSTGARISEAVGLDVDDVDGAERTVLLDGKGGKQRL 188 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDK-----------QKMNATQFSIWFKAKATKAGVN 283 V + + L + + + +++ K A +AG+ Sbjct: 189 VPIGRPALAALHAYTVRARPALAVHGRGTAALFLNARGSRLSRQSAWQVLKDTAGRAGIT 248 Query: 284 --KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 S H +R AT + GA + G +V + YT Sbjct: 249 AVVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYT 290 >gi|269836497|ref|YP_003318725.1| integrase family protein [Sphaerobacter thermophilus DSM 20745] gi|269785760|gb|ACZ37903.1| integrase family protein [Sphaerobacter thermophilus DSM 20745] Length = 306 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 41/279 (14%), Positives = 91/279 (32%), Gaps = 25/279 (8%) Query: 75 ISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDY----RKITTKHIRSGVESRKHT 129 I + + + N+ ++ + Q + ++T + + V + Sbjct: 5 IERFLAALGRDRGFSPNTVSAYRNDLSQFCHFLCEQHVLQSWAELTGTILTNYVLYLRER 64 Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-----QQ 181 ++ + + +++ + V + +P + PK R T E + Q Sbjct: 65 GYANATVARKVAAVKSFCHYLVECGELRHDPAAELPSPKVDKFIPRAITPEQVEALLAQP 124 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240 + E + + E L SG+R S+ V L ++ K V L Sbjct: 125 ARERTPEALRDKAMLETLYASGMRVSELTALNVDDLDLEAGRVRCGNKPERQRWVPLSSS 184 Query: 241 FMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGV 289 + L F F+N+ ++ F + K+ A A + + + H + Sbjct: 185 AIAALDEYLQLGRPFLRQSPAEQALFLNHRGSRLTRQGFWLILKSYAEAAELGDITPHTL 244 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 R A + G E+ G ++ + Y + A + Sbjct: 245 RHTFAAHALTRGRALREVQQVLGHVSISTTQVYQQVAAQ 283 >gi|116254508|ref|YP_770344.1| putative phage integrase protein [Rhizobium leguminosarum bv. viciae 3841] gi|115259156|emb|CAK10271.1| putative phage integrase protein [Rhizobium leguminosarum bv. viciae 3841] Length = 303 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 32/262 (12%), Positives = 85/262 (32%), Gaps = 17/262 (6%) Query: 80 KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQ 135 + + ++N+++++ R + + +R +K PSS Sbjct: 21 EDMQVRNFSLNTQLAYLQQVSLFARYFSKSP-DLLGREDVRIYQVYLANEKKLAPSSIHT 79 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195 ++++R L+K + +++V ++P + + +++Q F + Sbjct: 80 AISALRFLYKVTLERDWVPEEVLPLPKKP---QKLPIILSPDEVQHFLG-CVLDPKHHAI 135 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKE 253 +GLR S++ + + + ++ K V L +++L + Sbjct: 136 LTTCYAAGLRISEAVQLKPTDIDSQRMVVRVEQGKGQKDRYVMLSPKLLEILRDYWKMRR 195 Query: 254 TFFINNDK----QKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSATISADAGATAHEL 307 Q + ++ + H +R A +AGA + Sbjct: 196 PKAWLFPGDRAGQPITRDAVGEACAKAHNLSRLSKPVTPHSLRHAFAVHLLEAGADVRTI 255 Query: 308 MATYGWKTVDQAETYTKGADRI 329 G +++ Y + A Sbjct: 256 QLLLGHRSLATTAHYLRIATNK 277 >gi|84516057|ref|ZP_01003417.1| tyrosine recombinase XerD [Loktanella vestfoldensis SKA53] gi|84509753|gb|EAQ06210.1| tyrosine recombinase XerD [Loktanella vestfoldensis SKA53] Length = 306 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 43/288 (14%), Positives = 87/288 (30%), Gaps = 30/288 (10%) Query: 72 KWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSG---VES 125 + + ++ A N+++++ ++T I S + Sbjct: 2 ARWVQTFLQAQAAELDAATNTQLAYARDLQGFAEWLASRGLHFMQVTQDQIESYLIDCAA 61 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 S+ + L++++ LF++A + + A NP L ++ P R + ++ + Sbjct: 62 DGLAKSTRARRLSAIKQLFRFAYDEGWRADNPALQIKGPGRAQRLPKTLDLAEVDRLLDA 121 Query: 186 WSEGSQPRL----AFEFLLYSGLRCSDSCRAGVQHLQNNIFS-----------------I 224 + L E L +G+R S+ V + + Sbjct: 122 ARASPRDGLRNGCLMELLYATGMRVSELVSLPVSAARGDPRMLLVRGKGGKERLVPLSPP 181 Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-- 282 + + A P K F + + F K A AG+ Sbjct: 182 ARAAMAAWLAARDAAQEVAQKAGKPASKFLFPSHGKAGHLTRHAFFGLIKGFAVTAGLSP 241 Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + H +R AT GA + G + E YT D+ Sbjct: 242 ERVTPHVLRHAFATHLLAGGADLRSIQTMLGHADIATTEIYTHVLDQR 289 >gi|304412533|ref|ZP_07394139.1| tyrosine recombinase XerC [Shewanella baltica OS183] gi|307307192|ref|ZP_07586930.1| tyrosine recombinase XerC [Shewanella baltica BA175] gi|304349175|gb|EFM13587.1| tyrosine recombinase XerC [Shewanella baltica OS183] gi|306910431|gb|EFN40862.1| tyrosine recombinase XerC [Shewanella baltica BA175] Length = 306 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 31/275 (11%), Positives = 88/275 (32%), Gaps = 20/275 (7%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRKHTP 130 Y + L+ ++ ++ ++ + + + + + + + + +P Sbjct: 19 FERYLSTE--RQLSAHTVRNYLYELNRGSDLLPEGVHLLNVSREHWQQVLAKLHRKGLSP 76 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 S L++++ ++ +R+ + +NP + PK+ + + + Sbjct: 77 RSLSLCLSAVKQWGEFLLREGVIELNPAKGLSAPKQAKPLPKNIDVDAISHLLDIEGTDP 136 Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA 246 + + E SGLR ++ + +Q ++ ++ K V + + L Sbjct: 137 LSLRDKAMMELFYSSGLRLAELAALNLSSVQYDLKEVRVLGKGNKERIVPVGRLAIAALL 196 Query: 247 MTPIGKETFFINNDK-------QKMNATQFSIWFKAKAT--KAGVNKSAHGVRKFSATIS 297 ++ ++ ++++ V H +R AT Sbjct: 197 NWLNCRKQIPCEDNALFVTEKGKRLSHRSIQARMAKWGQEQALSVRVHPHKLRHSFATHM 256 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 +A A + G + + YT D L Sbjct: 257 LEASADLRAVQELLGHANLATTQIYT-SLDFQHLA 290 >gi|304413311|ref|ZP_07394784.1| site-specific tyrosine recombinase [Candidatus Regiella insecticola LSR1] gi|304284154|gb|EFL92547.1| site-specific tyrosine recombinase [Candidatus Regiella insecticola LSR1] Length = 252 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 35/234 (14%), Positives = 80/234 (34%), Gaps = 18/234 (7%) Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 + + + + +S+ + L++++ F++ R++ +P + PK + Sbjct: 7 LDLQRFFAERIDSHYKATSSARLLSAIKRFFQYLYREKLRINDPTALLSSPKLPQRLPKD 66 Query: 174 WTKEDMQQFKSFWSEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229 +++ ++ + + + + E L +GLR S+ + + ++ Sbjct: 67 LSEKQVEALLNAPNVDIPLQLRDKTMLEVLYATGLRVSELVGLIISDISLRQGVLRVIGK 126 Query: 230 -GTIITVELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKAT 278 V L + + + + F +N QKM F K A Sbjct: 127 GNKERLVPLGEEALYWIEQYIEHGRPWLVNGQALDAFFPSNRCQKMTRQTFWYRIKHYAI 186 Query: 279 KAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 A ++ S H +R AT + GA + G + + YT A Sbjct: 187 LANIDSERLSPHVLRHAFATHLLNHGADLRVVQMLLGHSNLSTTQIYTHVATER 240 >gi|298253373|ref|ZP_06977165.1| site-specific recombinase XerD [Gardnerella vaginalis 5-1] gi|297532768|gb|EFH71654.1| site-specific recombinase XerD [Gardnerella vaginalis 5-1] Length = 319 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 40/282 (14%), Positives = 85/282 (30%), Gaps = 30/282 (10%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGV---ESR 126 I + L+ + ++ S + + D I+ I S + Sbjct: 22 IQRFIAHIDIERGLSKKTVSAYASDLQDYTCWLYDERKIKDIATISQLDIESYIRTLNEL 81 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 + + L S+ ++ + + + V+ PK+ + E++ + Sbjct: 82 GLGTRTVARRLASIHEWHRFMLAHGDIQADVSAQVKAPKQADYLPDVLSIEEVNRVIEAA 141 Query: 186 ------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELP 238 + + EFL +G R S++ + + N +K T K V + Sbjct: 142 GNFGSSDAISIRDTALLEFLYATGARISEAVGVKFEDIDLNESVVKLTGKGSKQRLVPIG 201 Query: 239 DGFMKLLAMTPIGK------------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284 ++ L T F+N ++ +A ++K Sbjct: 202 GCAVRALRNYMEKSRPELALKGKRELHTIFLNKRGNALSRQSAWAIVTQAGERAKLDKPL 261 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 H +R AT GA + G +V + YT + Sbjct: 262 HPHTLRHSLATHLIAGGADVRTVQELLGHASVTTTQIYTHIS 303 >gi|257878400|ref|ZP_05658053.1| phage integrase [Enterococcus faecium 1,230,933] gi|257882818|ref|ZP_05662471.1| phage integrase [Enterococcus faecium 1,231,502] gi|257889401|ref|ZP_05669054.1| phage integrase [Enterococcus faecium 1,231,410] gi|257894414|ref|ZP_05674067.1| phage integrase [Enterococcus faecium 1,231,408] gi|257812628|gb|EEV41386.1| phage integrase [Enterococcus faecium 1,230,933] gi|257818476|gb|EEV45804.1| phage integrase [Enterococcus faecium 1,231,502] gi|257825761|gb|EEV52387.1| phage integrase [Enterococcus faecium 1,231,410] gi|257830793|gb|EEV57400.1| phage integrase [Enterococcus faecium 1,231,408] Length = 351 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 34/338 (10%), Positives = 93/338 (27%), Gaps = 44/338 (13%) Query: 34 RLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRI 93 ++ A L+ +Y + +K + + + +L N+ Sbjct: 3 KVGGDTRPEAEAALRKVLSDIDETGQYFLGTDTR---VKQYLDFWMEEYVKLNLKYNTYE 59 Query: 94 SFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF---LTSMRVLFKWAVR 149 ++ I G ++ +++ + + S + ++ AV Sbjct: 60 NYRFTIKNHINGYLGKKKLTDLSPALLQNFINAEFKKGYSKKTMTITHSVLKNALNMAVY 119 Query: 150 QEYVAINPCLSVERPKRKTEGI------RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203 + + + + + + ED EG + Y+G Sbjct: 120 PWGLIKQNPMLYVKIPKYEARPTTKKDLKIISLEDFDHMLEITPEGHPFYIPLNIGFYTG 179 Query: 204 LRCSDSCRAGVQHLQNN----------------IFSIKTQKTGTIITVELPDGFMKLLAM 247 +R + C + + + + + T+ + + +L Sbjct: 180 MRVGEVCGLTWDDVDFSNGTITVEKQMVKNDGAWVYGTPKTSSSNRTIFIGQTLLAILKK 239 Query: 248 TPIGKETFFINNDKQKM--------------NATQFSIWFKAKATKAGVNKSAHGVRKFS 293 + + K + + + + ++ + H +R Sbjct: 240 HKKQQLENRMKYGKLYIDSNAVCTKEDGELVTPSVVKWNTRRISNALSLSFNFHSLRHTH 299 Query: 294 ATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330 AT+ + GA E+ G + TY+ D++R Sbjct: 300 ATLLLENGAKMKEISERLGHSRISITMDTYSHVTDKMR 337 >gi|167772803|ref|ZP_02444856.1| hypothetical protein ANACOL_04185 [Anaerotruncus colihominis DSM 17241] gi|167665281|gb|EDS09411.1| hypothetical protein ANACOL_04185 [Anaerotruncus colihominis DSM 17241] Length = 526 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 44/386 (11%), Positives = 108/386 (27%), Gaps = 45/386 (11%) Query: 1 MTPSLRLPPFVTKERTRH---GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPK 57 M + ++R G+++ + + R + + L + Sbjct: 1 MGKRRKKGEGSVRQRNDGRWEGRVVIGYDEKGLPRTKNVLAKTKRECQEKLKQLRETMTG 60 Query: 58 REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGDFDYRKITT 116 + + + + ++ + ++ ++E + II + G ++ Sbjct: 61 SKTEK--VRPEMPFGEWLDFWYQNYVKPQIRPTTQANYEAKIYQHIIPELGKIPLNQLAQ 118 Query: 117 KHIRSGVESRKHTPSSAIQ--------------FLTSMRVLFKWAVRQEYVAINPCLSVE 162 K ++ K + R + AV++ + NP + + Sbjct: 119 KDLQQFYARMKTAGRLIRTEQFGKGLSDSMVRGLHAACRSALEKAVQEGLIRTNPAVGCK 178 Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222 P ++ ++ +E++Q+F L F L +GLR + L Sbjct: 179 LPPKRGREMQVLGREELQRFLIQAQAEGYFEL-FLLDLCTGLRRGELLALQWDDLDFRTG 237 Query: 223 SIKTQKTGTIITVELPDGF--------------------MKLLAMTPIGKETFFINNDKQ 262 ++ K + L + Sbjct: 238 ALTVNKQVYEVKGRLQVSVPKTRASIRRLVLPPGVVEVLRAYRETVDSRWMFPSPVKEDV 297 Query: 263 KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-E 320 M + +AG + H +R AT+S + G L A G + + Sbjct: 298 PMTPGAVRRRLQIILERAGCKRIRFHDLRHTFATLSLENGMDVKTLSAMLGHVSAATTLD 357 Query: 321 TYTKGADRIRLGIKNSRRISSVVDSD 346 YT + + + +I + ++ Sbjct: 358 IYTHVTGD--MQSEAAAKIDRGLGNE 381 >gi|145633727|ref|ZP_01789452.1| tyrosine recombinase [Haemophilus influenzae 3655] gi|144985386|gb|EDJ92213.1| tyrosine recombinase [Haemophilus influenzae 3655] Length = 295 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 37/271 (13%), Positives = 90/271 (33%), Gaps = 20/271 (7%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIR---SGVESR 126 ++ Y ++ ++ +++ D I+ D ++T +R + + + Sbjct: 4 ALNRYWDYLRIERQMSPHTLTNYQHQLDATIKILAQQDIYAWAQVTPSVVRFILAESKKQ 63 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 S L+++R + V+Q + +NP + PK+ + E +QQ + Sbjct: 64 GLKEKSLALRLSALRRFLSFLVQQGELKVNPATGISAPKQGKHLPKNMDGEQVQQLLAND 123 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 + R E + SGLR S+ + + + ++ V Sbjct: 124 SKEPIDIRDRAILELMYSSGLRLSELQGLDLNSINTRVREVRVIGKGNKERVVPFGRYAS 183 Query: 243 KLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293 + E F++ +++ + + G+ + + H +R Sbjct: 184 HAIQEWLKVRALFNPKDEALFVSQLGNRISHRAIQKRLETWGIRQGLNSHLNPHKLRHSF 243 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324 AT +A + + G + + YT Sbjct: 244 ATHMLEASSDLRAVQELLGHSNLSTTQIYTH 274 >gi|328952607|ref|YP_004369941.1| integrase family protein [Desulfobacca acetoxidans DSM 11109] gi|328452931|gb|AEB08760.1| integrase family protein [Desulfobacca acetoxidans DSM 11109] Length = 281 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 31/265 (11%), Positives = 71/265 (26%), Gaps = 19/265 (7%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP- 130 + YR+ + + + + G +IT + +RK TP Sbjct: 3 DHYLEIYRQQKSFHNFK-------KQIVQTLTEAFGSTRLSQITYLDLEKHRNTRKATPT 55 Query: 131 --------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + + + ++ + AV + P ++ K + + Sbjct: 56 WRGETRSDARVNREMAVLKHMLNKAVEWGMLEGTPFKKGQKLMFKENNHSLRFLSEAEIE 115 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242 R E L +G+R + + + + + + K+G + + + Sbjct: 116 ALLAVCPPHLRPIVETALLTGMRKEELLSLKWEQINHGLIHLIRTKSGNPRHIPISGRLV 175 Query: 243 KLLAMTPIGKETFFINNDKQKMNAT--QFSIWFKAKATKAGVN-KSAHGVRKFSATISAD 299 ++ + F KAG+ H +R A+ Sbjct: 176 EIFQQLRHQNQLKSPYVFCDGEGRRFNSVKRSFATACRKAGIENFRFHDLRHTFASHLIM 235 Query: 300 AGATAHELMATYGWKTVDQAETYTK 324 GA + G + Y Sbjct: 236 RGAGLKTVQELLGHSDIKMNMRYAH 260 >gi|315644277|ref|ZP_07897447.1| hypothetical protein PVOR_02010 [Paenibacillus vortex V453] gi|315280652|gb|EFU43941.1| hypothetical protein PVOR_02010 [Paenibacillus vortex V453] Length = 348 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 50/317 (15%), Positives = 98/317 (30%), Gaps = 41/317 (12%) Query: 52 TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS----G 107 + RE I + +L+ + K +L + + + I G Sbjct: 7 RKTAGAREPIANVALPSYSLQEAVEFVVKIKRANNLKERTISGYIQNMNYFIEWITERYG 66 Query: 108 DFDYRKITTKHIRSG---------------------VESRKHTPSSAIQFLTSMRVLFKW 146 + R++T +R +P+S + + F Sbjct: 67 EITIREVTADLLREYVLWCATDKEYYAGHPFKAEYEKGKLGLSPASVNVRIRVFKTFFAV 126 Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWT----KEDMQQFKSFWSEGSQPRLAFEFLLYS 202 +E + NP ++V ++ + I P + + M+ + + +L + Sbjct: 127 LHEEEVIDRNPAVNVSLLRQDIDTIMPLSDEELRRFMKSPDQRQWAQWRDYVIMTLILDT 186 Query: 203 GLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPDGFMKLLAM------TPIGK 252 GLR + C + SI K + L +LL Sbjct: 187 GLRLGEICALEKMEIDFVKKSITLPASKNKNRKSRMLPLSTETARLLKQLIAETERNFDT 246 Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKA--GVNKSAHGVRKFSATISADAGATAHELMAT 310 F N ++++ F A KA G N S H +R AT++A+ G + L Sbjct: 247 TYVFTTNYGEQLSEKTIQKSFDKYAEKAKLGRNVSPHVLRHNFATMAAENGMSVFHLQKL 306 Query: 311 YGWKTVDQAETYTKGAD 327 G + Y + ++ Sbjct: 307 MGHADIATTRKYVQISE 323 >gi|145631901|ref|ZP_01787657.1| tyrosine recombinase [Haemophilus influenzae R3021] gi|148826672|ref|YP_001291425.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae PittEE] gi|229847208|ref|ZP_04467312.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae 7P49H1] gi|166918886|sp|A5UE41|XERC_HAEIE RecName: Full=Tyrosine recombinase xerC gi|144982462|gb|EDJ90028.1| tyrosine recombinase [Haemophilus influenzae R3021] gi|148716832|gb|ABQ99042.1| tyrosine recombinase [Haemophilus influenzae PittEE] gi|229809884|gb|EEP45606.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae 7P49H1] gi|309973815|gb|ADO97016.1| Site-specific tyrosine recombinase XerC [Haemophilus influenzae R2846] Length = 295 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 37/271 (13%), Positives = 88/271 (32%), Gaps = 20/271 (7%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESR 126 ++ Y ++ ++ +++ D I+ D T + I + + + Sbjct: 4 ALNRYWDYLRIERQMSPHTITNYQHQLDATIKILAQQDIHAWTQVTPSVVRFILAESKKQ 63 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 S L+++R + V+Q + +NP + PK+ + E +QQ + Sbjct: 64 GLKEKSLALRLSALRRFLSFLVQQGELKVNPTTGISAPKQGKHLPKNMDGEQVQQLLAND 123 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 + R E + SGLR S+ + + + ++ V Sbjct: 124 SKEPIDIRDRAILELMYSSGLRLSELQGLDLNSINTRVREVRVIGKGNKERVVPFGRYAS 183 Query: 243 KLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293 + E F++ +++ + + G+ + + H +R Sbjct: 184 HAIQEWLKVRALFNPKDEALFVSQLGNRISHRAIQKRLETWGIRQGLNSHLNPHKLRHSF 243 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324 AT +A + + G + + YT Sbjct: 244 ATHMLEASSDLRAVQELLGHSNLSTTQIYTH 274 >gi|76579073|gb|ABA48548.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1710b] Length = 508 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 47/322 (14%), Positives = 91/322 (28%), Gaps = 35/322 (10%) Query: 44 IPAYMSALTGSTPKREYINSPRKKPTTLKWLIS--EYRKSAHW-----------GSLAVN 90 A + + + + L + + S L+ N Sbjct: 177 ARAVHACAADTAGGDAGRAPAQPADRPVDALAASPAWLDSRASIDLFCDAMWLEHGLSRN 236 Query: 91 SRISFESYFDQIIRKSGDFDYRKIT----TKHIRSGVESRKHTPSSAIQFLTSMRVLFKW 146 + ++ + + +S+ + L+ R + W Sbjct: 237 TLDAYRRDLQLFAQWLAARHVASVDHASEPTLTEYIAARSDGKATSSNRRLSVFRRYYGW 296 Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYS 202 AVR+ A++P L + K+ ++ ++ + + + R E + S Sbjct: 297 AVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALLAAPDVDTPLGLRDRTMLELMYAS 356 Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETF------ 255 GLR S+ + N ++ V + + Sbjct: 357 GLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVPFGEVAHGWIERYLRDARPALLGARA 416 Query: 256 ----FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMA 309 F+ M QF K A +A V + S H +R AT + GA + Sbjct: 417 ADALFVTARGDGMTRQQFWNIIKRHAQQADVRVHLSPHTLRHAFATHLLNHGADLRVVQL 476 Query: 310 TYGWKTVDQAETYTKGADRIRL 331 G + + YT A R RL Sbjct: 477 LLGHSDISTTQIYTHVA-RERL 497 >gi|317063575|ref|ZP_07928060.1| integrase/recombinase [Fusobacterium ulcerans ATCC 49185] gi|313689251|gb|EFS26086.1| integrase/recombinase [Fusobacterium ulcerans ATCC 49185] Length = 298 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 43/272 (15%), Positives = 95/272 (34%), Gaps = 24/272 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKH- 128 I ++ A + + ++N+ S + Q+ + + KIT +R + + + Sbjct: 12 IKDFLYYAEFGENKSLNTIKSLKKDLSQLSEYLKNIEKIEEASKITPVMLRGFIIALQKN 71 Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 S + L+S+R FK+ ++ + NP + P + E T E++ + + Sbjct: 72 EVGKRSINRKLSSLRSFFKYLMKNNLIKNNPIEIINSPSFEAEKPDILTLEEINKLRDVI 131 Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242 + G + RL E L SG+ ++ G Q + ++ V Sbjct: 132 NTDNANGLRDRLILELLYSSGITSTEMLSIGEQVFDLDSRTLLVSNGKANRYVFFSQRTR 191 Query: 243 KLLAMTPIGKETFFINNDKQ----------KMNATQFSIWFKAKATKAGVNK--SAHGVR 290 + K+ + + +++ A +AG+ + S + R Sbjct: 192 EYFKRYVEAKKEKYGDKYNSSILFVNGSGSRLSDRSLRRIVDRYAARAGITREISPYSFR 251 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETY 322 A G + + L G T++ + Y Sbjct: 252 HTFAVHLLTKGMSLNFLQELMGHVTIESTKIY 283 >gi|257469328|ref|ZP_05633422.1| integrase family protein [Fusobacterium ulcerans ATCC 49185] Length = 294 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 43/272 (15%), Positives = 95/272 (34%), Gaps = 24/272 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKH- 128 I ++ A + + ++N+ S + Q+ + + KIT +R + + + Sbjct: 8 IKDFLYYAEFGENKSLNTIKSLKKDLSQLSEYLKNIEKIEEASKITPVMLRGFIIALQKN 67 Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 S + L+S+R FK+ ++ + NP + P + E T E++ + + Sbjct: 68 EVGKRSINRKLSSLRSFFKYLMKNNLIKNNPIEIINSPSFEAEKPDILTLEEINKLRDVI 127 Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242 + G + RL E L SG+ ++ G Q + ++ V Sbjct: 128 NTDNANGLRDRLILELLYSSGITSTEMLSIGEQVFDLDSRTLLVSNGKANRYVFFSQRTR 187 Query: 243 KLLAMTPIGKETFFINNDKQ----------KMNATQFSIWFKAKATKAGVNK--SAHGVR 290 + K+ + + +++ A +AG+ + S + R Sbjct: 188 EYFKRYVEAKKEKYGDKYNSSILFVNGSGSRLSDRSLRRIVDRYAARAGITREISPYSFR 247 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETY 322 A G + + L G T++ + Y Sbjct: 248 HTFAVHLLTKGMSLNFLQELMGHVTIESTKIY 279 >gi|229176440|ref|ZP_04303876.1| Site-specific recombinase, phage integrase [Bacillus cereus MM3] gi|228607031|gb|EEK64417.1| Site-specific recombinase, phage integrase [Bacillus cereus MM3] Length = 322 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 39/269 (14%), Positives = 81/269 (30%), Gaps = 22/269 (8%) Query: 83 HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTS 139 + + F +R+ IT H++ + + P++ +++ Sbjct: 38 RAEGFRKRTIDDYSKLFRYFMRELNIEKVEIITAAHVQMYINKLLNRELAPATVNIRISA 97 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPRLA 195 ++ +FK Y+ NP + + + I +++ G + A Sbjct: 98 LKSVFKRLNELGYIKSNPAVDFVKLRTDEAPIFTLNHNQIKRIFRVVDKTTYAGYRDYCA 157 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPDGFMKLLAMTPIG 251 +L+ GLR ++ + + + +I K V + + L M Sbjct: 158 MLLMLHCGLRVNEVNQLEANDIDFDNLTIMLAGAKNKNRKTRAVPMTKKVAEELRMLIDE 217 Query: 252 KETFFINNDKQKMNATQ-------FSIWFKAKATKAGVNK----SAHGVRKFSATISADA 300 +F + T AG+ K S H +R AT Sbjct: 218 SREYFEGVTNVFLTQEGKVIDNDLLRKRMYRYGTLAGLLKECRPSPHSLRHTFATNFLRN 277 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329 G + + LM G + Y + D Sbjct: 278 GGSVNALMRIMGHADITTTMRYVRLNDEA 306 >gi|110799420|ref|YP_695812.1| site-specific tyrosine recombinase XerC [Clostridium perfringens ATCC 13124] gi|110674067|gb|ABG83054.1| site-specific recombinase, phage integrase family [Clostridium perfringens ATCC 13124] Length = 450 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 43/303 (14%), Positives = 98/303 (32%), Gaps = 50/303 (16%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKS-----------------------GDFDYRKI 114 Y ++ +VN+ + + GD + I Sbjct: 142 YLENV--KGKSVNTIKGYSVDLGLFFKFLKVYKGLENNIELEKIEEVEISDLGDNFIKDI 199 Query: 115 TTKHIRSGVES----RKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTE 169 T I + + R ++ + + + +++ FK+ + + + NP + +E PK Sbjct: 200 TLSDIYAFLAFLEKVRNNSAYARARKVATLKSFFKFLNSKIKLIDENPTVELESPKINKR 259 Query: 170 GIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225 T + + + + + L G+R S+ C ++ ++ + +I Sbjct: 260 HPVYLTLDQSITVLNSMDKENKNYYRDYCILTLFLNCGMRLSELCNIEIEKIKGDTLTII 319 Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKE----------TFFINNDKQKMNATQFSIWFKA 275 + TV L + + + + F+++ + +N I K Sbjct: 320 GKGN-KERTVYLNEASIAAIENYLKNRNDSKATEEAKKYLFLSSKYRPINKRSVEILVKK 378 Query: 276 KATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADR-IR 330 AG + H +R +AT+ G L G + + + YT D +R Sbjct: 379 HIENAGFKDQKYTPHKLRHTAATLMYKYGNVDIRSLQNILGHENISTTQIYTHVDDETLR 438 Query: 331 LGI 333 + Sbjct: 439 EAV 441 >gi|319639109|ref|ZP_07993866.1| tyrosine recombinase xerC [Neisseria mucosa C102] gi|317399687|gb|EFV80351.1| tyrosine recombinase xerC [Neisseria mucosa C102] Length = 298 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 44/267 (16%), Positives = 92/267 (34%), Gaps = 17/267 (6%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI-TTKHIRSGVESRKHTP--- 130 + Y K+ + ++ ++ +++R D + T + + ++ Sbjct: 11 LERYLKTLSQQGKSQHTVSAYRRDLSELMRLLPDNLENGLPTRRDFVAALKKLSQKGLSE 70 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 SS + L++ R W V+ E + +P +++ P+ + +E + Sbjct: 71 SSLARKLSAWRQYCSWLVQIEVMESDPTFNMKAPRLPERLPKALPQEPLNHILDHAPVDD 130 Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAG-VQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 + + FE + SGLR S+ + + + K G V L + L Sbjct: 131 ELDVRDKAMFELMYGSGLRLSEIQGLNLNSIVLDEGWVSVNGKGGKQRQVPLVAKSIAAL 190 Query: 246 AMT------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297 G++ F N + ++ Q +A A + G + S H +R AT Sbjct: 191 RDYLAVRIAKEGEQALFTNKNGGRLGQRQIQKRLQAWAVRVGSASHISPHMMRHSYATHL 250 Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324 A + G + + YTK Sbjct: 251 LQASGDIRAVQELLGHSNLSATQVYTK 277 >gi|320352375|ref|YP_004193714.1| integrase family protein [Desulfobulbus propionicus DSM 2032] gi|320120877|gb|ADW16423.1| integrase family protein [Desulfobulbus propionicus DSM 2032] Length = 344 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 50/327 (15%), Positives = 106/327 (32%), Gaps = 16/327 (4%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 P TK ++ GK +R R+ + Y ++ ++P+ Sbjct: 5 PHPTKSKSEPGKWWVIDIGRGNQRERITFNGSYEEAWRYERSIRQQPDHLVEGSAPK--- 61 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVE--- 124 +K +++ + + + ++N+ + II G+F +++T Sbjct: 62 --IKDVVTLFLEWYRTEN-SINTVNDMRFCLDNHIIPWFGNFQPKQLTIALFNKFKADLL 118 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 R P + + ++ + L KWA Y K+KT Q Sbjct: 119 ERGLAPVTINKNMSYLSSLLKWASEHGYCQPLAFTIPRFSKKKTTAEPVQPLTRRQLDAL 178 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 + + RL F + GLR ++ V+ + +I+ G+ + Sbjct: 179 YECLDPEYRLLFLLMADHGLRKEEALNLQVEDIDEARKTIRVYGKGSKYRIVPFLSVRFE 238 Query: 245 LAMTPIGKETFFINNDKQKMN---ATQFSIWFKAKATKAGVNKSA--HGVRKFSATISAD 299 + + E A KAG+++ H +R +++A+ Sbjct: 239 EELNKVLSERLEGFLVVNPATGKPYYSIRKVLTRAAKKAGLSRQVYHHLLRHTFGSLAAE 298 Query: 300 AGATAHELMATYGWKTVDQA-ETYTKG 325 AG + L G ++ + YT Sbjct: 299 AGMNPYALQRIMGHSNIETTNKIYTHV 325 >gi|285019429|ref|YP_003377140.1| tyrosine recombinase [Xanthomonas albilineans GPE PC73] gi|283474647|emb|CBA17146.1| probable tyrosine recombinase protein [Xanthomonas albilineans] Length = 324 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 52/290 (17%), Positives = 96/290 (33%), Gaps = 31/290 (10%) Query: 72 KWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGVES 125 I ++ +A LA S S+ + R G + + + Sbjct: 25 AAAIQQFLDAAWTEQGLARQSLDSYRRDLEGFARWRDGVGDGLVGADRQALFNYLAWRTE 84 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 +T S ++L+S+R F +R+ +P +E P+ + + + + Sbjct: 85 LGYTQRSNARWLSSLRAFFALRLRRGQRGDDPTALLEPPRLPRSLPKALAESQIDALLAA 144 Query: 186 W----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDG 240 G + R E + +GLR S+ + + ++ V L + Sbjct: 145 PDTTAPLGLRDRAMLELMYAAGLRVSELVQLPANAVNLRQGVLRVTGKGSKERLVPLGEE 204 Query: 241 FMKLLAMTPIGKE----------------TFFINNDKQKMNATQFSIWFKAKATKAGVN- 283 L FI+ ++ ++ QF + K AT AG++ Sbjct: 205 SQHWLQCYLDTARSVLVAGQAVPARDGAVPLFIDAARRPLSRQQFWVLIKRYATLAGIDP 264 Query: 284 --KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 S HG+R AT + GA L G ++ + YT A R L Sbjct: 265 MRISPHGLRHSFATHLLNRGADLRALQMLLGHSSLSTTQIYTLVA-REHL 313 >gi|162329627|ref|YP_471302.2| site-specific tyrosine recombinase XerD [Rhizobium etli CFN 42] Length = 317 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 41/290 (14%), Positives = 83/290 (28%), Gaps = 35/290 (12%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRKH 128 + + + A N+ S+E D + + + + Sbjct: 9 VESFLEMMSAERGAAANTLQSYERDLDDVRSFLNGRSIRLTEAASADLAAYLASLARQGF 68 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI---------RPWTKEDM 179 PSS + L +MR +K+ + +P ++ PK+ R ++ Sbjct: 69 KPSSQARRLAAMRQFYKFLYAEGLRTDDPTGVLDAPKKGRPLPKTMGVEEVGRLLSQAQT 128 Query: 180 QQFKSFWSEGSQPRLAF--EFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVE 236 + + + R+ E L +G+R S+ + L + K V Sbjct: 129 EADDPAPGQLQRRRMLALLELLYATGMRVSELVSLPARVLDQEGRFLMIRGKGNKERLVP 188 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNA--------------TQFSIWFKAKATKAGV 282 L + L + + + F+ K A +AG+ Sbjct: 189 LSHSAIAALKSYGRLLAADAAAAKEPQESPWLFPAASKEGYLPRQVFARDLKNLAIRAGL 248 Query: 283 N---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 S H +R A+ GA + G + + YT + Sbjct: 249 TPSLISPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEER 298 >gi|51892621|ref|YP_075312.1| recombinase [Symbiobacterium thermophilum IAM 14863] gi|51856310|dbj|BAD40468.1| recombinase [Symbiobacterium thermophilum IAM 14863] Length = 356 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 45/335 (13%), Positives = 97/335 (28%), Gaps = 65/335 (19%) Query: 78 YRKSAHW-GSLAVNSRISFESYFDQIIRKSGD---------------------------- 108 + S S + ++ S+ Q Sbjct: 20 FLASLSVEKSASQHTLRSYRLDLAQFYAWLASGGTTAPVVGGRGSGRTRRHDFAAQQEEP 79 Query: 109 ---------FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159 +T + + ++ ++ + + + L+ +R +K+ VR + V NP Sbjct: 80 VRPVGLDELRAVNHLTIRSYLAFLQRQEFSRRTIARKLSCLRSFYKYLVRADLVPTNPVA 139 Query: 160 SVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215 V PK + +E++ Q + G + R E L +GLR + Sbjct: 140 GVHTPKLERRLPVFLDEEEIGGLLSQPDTHTPLGLRDRALLELLYATGLRVGELVALNRG 199 Query: 216 HLQNNI-FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF------------------- 255 + + + I K V + ++ L Sbjct: 200 DIDYSEGWVIVWGKGRKERAVPVGSEALQALGHYLRDGWPVLRARAPAAEQSLPEAKQPL 259 Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGW 313 F+N +++ ++ +++ S H +R AT + GA + G Sbjct: 260 FLNKLGGRLSDRSVRRLLDRYVSQLALSRQISPHKIRHTFATHMLNHGADLRAVQEMLGH 319 Query: 314 KTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 ++ + YT + RL + R + P Sbjct: 320 ASLSTTQIYTHVTTQ-RLRTEYLRAHPRQRRAAPP 353 >gi|326335381|ref|ZP_08201569.1| mobilizable transposon [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692446|gb|EGD34397.1| mobilizable transposon [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 410 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 50/350 (14%), Positives = 106/350 (30%), Gaps = 26/350 (7%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHEST---FIPAYMSALTGSTPKREYINSPRKKPTT 70 + G + Y ++ I + F A L ++ + ++ Sbjct: 61 KTDDKGNVSYKPKRNENGVIICKSDLDKETMLFADAIRRKLQKEYDEQILLGDNQQLKQ- 119 Query: 71 LKWLISE----Y---RKSAHWGSLAVNSRISFESYFDQIIRKSGDF-DYRKITTKHIRSG 122 K L+ E Y + + RI+++ + + SG + +I K Sbjct: 120 -KELLDEDFVSYSEELLKKRHKNSSDAIRINWKRVIELLKLFSGGRVKFAQIDMKFSEDF 178 Query: 123 VESRKHTP-----------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 P +++ + + + + K A Y + ++ + Sbjct: 179 KNFLLSAPCGGNKKGTISVNTSATYFSIFKAILKQAFIDGYFLSDLSGKIKGIADRESRR 238 Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 ++E++ + R A F +GLR SD R + + + I+ T Sbjct: 239 EYLSEEELNILAKTPCDNDILRRASLFSALTGLRLSDIQRLKWKEIIEDNDKIELHFTQK 298 Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 K + + + S K TKAG++K + H Sbjct: 299 KTKGVEYKPISKQALELCGERRDLEDLVFENLPDPAWISRPLKKWITKAGIHKNITFHCF 358 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 R AT+ G + + G V + Y K D+ ++ ++ Sbjct: 359 RHTFATLQLANGTDIYTVSKMLGHTNVKTTQAYAKVIDKNKIKAAEVIKL 408 >gi|310657614|ref|YP_003935335.1| phage integrase [Clostridium sticklandii DSM 519] gi|308824392|emb|CBH20430.1| Phage integrase [Clostridium sticklandii] Length = 376 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 46/368 (12%), Positives = 109/368 (29%), Gaps = 43/368 (11%) Query: 12 TKERTRHGKIIYYFRKGHGR----RIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67 K+ +++G F + + + + Sbjct: 4 YKDESKNGTWFCKFTYTNWKGEKINKKKRGFATKKLAQEWEQEFLNE--------QSGTL 55 Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR 126 T K Y++ + ++ + E + +I+ G +I + I Sbjct: 56 EMTFKEFFEVYKRDKKPR-IREHTWKTKEYIVNTKILPYFGKIKMNEIKSITIIHWQNEL 114 Query: 127 ---------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTK 176 K++P+ + L A + + N V K + WT+ Sbjct: 115 MEKRDDKGQKYSPTYLRTIHAQLSSLLNHACKYYNLKTNAARDVGSMGEKEANEMLFWTQ 174 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---- 232 E+ ++F S + Q AFE L + GLR + + +K ++ Sbjct: 175 EEYEKFISAIKDKPQSFYAFEILYWCGLRIGELFALTKEKFDFENNIVKVDQSVQKLNGE 234 Query: 233 ------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280 T+ +P+ + + G + ++ + KA Sbjct: 235 IVITPPKTKKSIRTIVMPEFLSREIQEYLSGFYKLKDKDLIFPISKSYLHHEMDRGCKKA 294 Query: 281 GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 V + H +R ++ + G +A + G +++D Y + ++ + Sbjct: 295 SVKRIRVHDLRHSHVSLLIELGYSAIAIADRVGHESIDITYRYAHLFPSKQ--SDMAKSL 352 Query: 340 SSVVDSDD 347 + D+ + Sbjct: 353 MQLRDNSN 360 >gi|256827139|ref|YP_003151098.1| site-specific recombinase XerD [Cryptobacterium curtum DSM 15641] gi|256583282|gb|ACU94416.1| site-specific recombinase XerD [Cryptobacterium curtum DSM 15641] Length = 315 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 45/300 (15%), Positives = 93/300 (31%), Gaps = 35/300 (11%) Query: 74 LISEYRKSAHWGSL-AVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRK 127 L++ Y + + ++ ++ + +R + + + H +++ + Sbjct: 15 LVARYLEELTSTGRASAHTIRNYGNDLADWLRFAERSNINALEPSHRDIRLYLVDLDAAR 74 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 + ++ + L+S+R F+W NP +V K DM + Sbjct: 75 YAKATINRRLSSLRGFFRWGQIAGLFEHNPAEAVSSLKEGKHLPHRIPPSDMVRILRVNG 134 Query: 187 ------------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTII 233 + + EFL G R S++ V + + + + K Sbjct: 135 PRDEQGKTRLQTPIQMRDQAVLEFLYACGARISEAAALTVDAVDLDRGTARLFGKGSKER 194 Query: 234 TVELP-----------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 V L L FF++ MN FK +AGV Sbjct: 195 VVYLHALAIESMGAYLHFARNDLLRGRTDPGYFFLSTRGLPMNTDAIRKMFKTTLIQAGV 254 Query: 283 N--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIKNSRR 338 + H +R A+ + GA + G ++ + YT A ++ + R Sbjct: 255 RAAYTPHDMRHTFASDLLEGGADLRSVQELLGHSSLSTTQIYTHVSIAQMRKVHKQAHPR 314 >gi|187251859|ref|YP_001876341.1| integrase family protein [Elusimicrobium minutum Pei191] gi|186972019|gb|ACC99004.1| Integrase family protein [Elusimicrobium minutum Pei191] Length = 337 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 39/312 (12%), Positives = 86/312 (27%), Gaps = 15/312 (4%) Query: 18 HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77 +G +R R R+ + + ++ K+ T + Sbjct: 8 NGTWGIDYRYKSKRYKRV-VAITRKLALDIERKILTDIKEGKFFPDLDKQDVTFAEIAER 66 Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--SRKHTPSSAIQ 135 Y + + FD I+ + G ITT+ I+ + +PS+A + Sbjct: 67 YWSLHGRKTRGAQTFK---YTFDIILSRFGHMKVADITTEDIQKFYNDTWERTSPSTANR 123 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195 + R + + + +++ R + ++ + Sbjct: 124 HFSLFRAIIN-KALNLKLYKGQNPCIGVVRQRDNPPRDKYFTKEDIKSLLVTAENRLKPI 182 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKE 253 F + +G R + + + I+ K+G + L + +L + Sbjct: 183 IAFAVLTGCRKMEILNLRWKDVDFYGGIIRITMSKSGKPREIPLANDLRPILLAMHTNPQ 242 Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYG 312 N F K G H R A++ +L G Sbjct: 243 DKVFNI-----TVPALKYSFNKLLKKLGFEGYCFHTCRHTFASLYMQNDGNITDLQRILG 297 Query: 313 WKTVDQAETYTK 324 T++ Y+ Sbjct: 298 HATIELTMRYSH 309 >gi|145629633|ref|ZP_01785430.1| tyrosine recombinase [Haemophilus influenzae 22.1-21] gi|144978144|gb|EDJ87917.1| tyrosine recombinase [Haemophilus influenzae 22.1-21] Length = 295 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 36/271 (13%), Positives = 88/271 (32%), Gaps = 20/271 (7%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESR 126 ++ Y ++ ++ +++ D I+ D T + I + + + Sbjct: 4 ALNRYWDYLRIERQMSPHTITNYQHQLDATIKILAQQDIHSWTQVTPSVVRFILAESKKQ 63 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 S L+++R + V+Q + +NP + PK+ + E +Q+ + Sbjct: 64 GLKEKSLALRLSALRRFLSFLVQQGELKVNPATGISAPKQGKHLPKNMDGEQVQRLLAND 123 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 + R E + SGLR S+ + + + ++ V Sbjct: 124 SKEPIDIRDRAILELMYSSGLRLSELQGLDLNSINTRVREVRVIGKGNKERVVPFGRYAS 183 Query: 243 KLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293 + E F++ +++ + + G+ + + H +R Sbjct: 184 HAIQEWLKVRALFNPKDEALFVSQLGNRISHRAIQKRLETWGIRQGLNNHLNPHKLRHSF 243 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324 AT +A + + G + + YT Sbjct: 244 ATHMLEASSDLRAVQELLGHSNLSTTQIYTH 274 >gi|260771629|ref|ZP_05880549.1| tyrosine recombinase XerC [Vibrio metschnikovii CIP 69.14] gi|260613406|gb|EEX38605.1| tyrosine recombinase XerC [Vibrio metschnikovii CIP 69.14] Length = 309 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 39/276 (14%), Positives = 91/276 (32%), Gaps = 23/276 (8%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRS---GVESRKHTP 130 EY +S L+++++ +++ + + + +R Sbjct: 21 EYLRSE--KGLSLHTQRNYQQQLQAMAGHLHHLGVSEWQHVDAAWVRQLASKGMRDGMKA 78 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 SS L+S+R F + + + ++ NP V P+++ + ++M Q Sbjct: 79 SSLATRLSSLRSFFDFLILRGELSANPAKGVSAPRKQRPLPKNLDVDEMAQLLEVTDNDP 138 Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLA 246 + R E + +GLR ++ ++ L + I+ V + + Sbjct: 139 LSIRDRAMMELMYGAGLRLAELVAINLKDLSFSRGEIRVIGKGDKERKVPFSGQAKEWVG 198 Query: 247 MTPIGKET--------FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296 +++ FI+ +++ K V + S H +R AT Sbjct: 199 KWLKVRDSLLKGEEVALFISKLGGRISHRSVQKRMAEWGHKQSVASHISPHKLRHSFATH 258 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 ++ + G + + + YT D L Sbjct: 259 VLESSNNLRAVQELLGHENISTTQIYTH-LDFQHLA 293 >gi|187932918|ref|YP_001886980.1| prophage LambdaBa04, site-specific recombinase, phage integrase family [Clostridium botulinum B str. Eklund 17B] gi|187721071|gb|ACD22292.1| prophage LambdaBa04, site-specific recombinase, phage integrase family [Clostridium botulinum B str. Eklund 17B] Length = 398 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 52/379 (13%), Positives = 105/379 (27%), Gaps = 62/379 (16%) Query: 15 RTRHGKIIYYFR--KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 R R K Y F G+R ++ T A + + + Sbjct: 7 RKRGDKWQYQFEAATIDGKRKQISKSGFRTKKEALEAGTKALAEYNNCGLTFVPSEISFN 66 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 + + K +L + ++ I K G + + +T ++S + + + Sbjct: 67 DYLDYWIKEYAQVNLKETTVDNYNKKIKLYIKPKLGIYKLKSLTPAILQSFINEKFNEGF 126 Query: 132 SAIQFL---TSMRVLFKWAVRQ-EYVAINPCLSVERP--------KRKTEGIRPWTKEDM 179 S L + +AV Y+ +P +V P + + ++E M Sbjct: 127 SRNTLLVLKGILSGSLNYAVEPLGYIKFSPMAAVRLPLKRAVPNTPTRKKEKYIVSEEQM 186 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------------NNIFSI 224 + + G L + GLR ++ + N + Sbjct: 187 EGIFERFPFGHSSYLPLQLAYRCGLRLGEAFAITWDDVDLKNQKLDINKQVQYKNKQWYF 246 Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN------------------------- 259 K + ++L + + +L + I Sbjct: 247 TPPKYDSYRIIDLDNTIIDILKKYKQQQRKDKIYYGELYTELKINDKKQIKETDGTEIHL 306 Query: 260 -----DKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGW 313 + + F K G+ H +R AT+ +GA + G Sbjct: 307 INIRENGTYIQPRVMQHCFHIIHHKLGIKELDYHSLRHTHATMLLSSGANIKAVQERLGH 366 Query: 314 KTVDQA-ETYTKGADRIRL 331 K +D + YT D +R Sbjct: 367 KKLDMTLDVYTHVTDEMRR 385 >gi|320100283|ref|YP_004175875.1| integrase family protein [Desulfurococcus mucosus DSM 2162] gi|319752635|gb|ADV64393.1| integrase family protein [Desulfurococcus mucosus DSM 2162] Length = 334 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 39/285 (13%), Positives = 84/285 (29%), Gaps = 34/285 (11%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----- 126 ++ E++ S + + ++ S + G R++T K + + R Sbjct: 20 DEILEEFKVSLEASGASSETVKAYLSAVKDFLSFIGGKPLREVTLKDVVAWRNERLRNGF 79 Query: 127 -------KHTPSSAIQFLTS-MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + + T ++ F+W V+ E I Sbjct: 80 PNRKMEGREKWQVTLHYYTMFLKRFFEWLGLNIGVSSVKKPPARINALSDEEIEKL---- 135 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVE 236 + +L L+ +GLR + V+ + + I+ K G V Sbjct: 136 -----MNAARTPLDKLILRLLVDTGLRSRELLGLRVEDVDFHSRVIRVSSAKYGKERYVT 190 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFS 293 ++L + + + K A +AG+ H +R Sbjct: 191 ATGETFEMLRSWIALNGLKPGDRLFN-LTYSGLYKKLKRLAARAGIPPEKIRPHVLRHTF 249 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338 AT + G + L G + + Y L I++ ++ Sbjct: 250 ATRALRRGLSLPSLQRLLGHADIKTTQVYLH------LSIEDLKK 288 >gi|269213747|ref|ZP_05982773.2| tyrosine recombinase XerC [Neisseria cinerea ATCC 14685] gi|269145670|gb|EEZ72088.1| tyrosine recombinase XerC [Neisseria cinerea ATCC 14685] Length = 329 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 93/289 (32%), Gaps = 26/289 (8%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRK 127 L + Y ++ + ++ ++ +++ + T + Sbjct: 34 LAAYLDAYLENIVREGKSEHTVAAYRRDLQELLALLEEMPSANPPNCTRGDFVQALRRLS 93 Query: 128 HTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + + L+S R W V++ + +P ++ PK+ + +E + Q Sbjct: 94 GRGLGERTLARKLSSWRQYCVWLVKRGLMHADPTADIKPPKQPERIPKALPQECLNQMLD 153 Query: 185 FWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELP 238 + + FE + SGLR S+ + + ++ V L Sbjct: 154 LPVDDGDALALRDHALFELMYGSGLRLSEIHGLDTGDVWLDEGWVRVTGKGRKQRQVPLT 213 Query: 239 DGFMKLLAMTPIGKETF------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290 ++ L ++T F + +++ Q ++ A + G + S H +R Sbjct: 214 GKSVEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLESWAAQNGDGRHISPHMMR 273 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 A+ + + G ++ + YTK L + R+ Sbjct: 274 HSYASHLLQSSRDIRAVQELLGHSSLSTTQIYTK------LDFDHIARL 316 >gi|302387141|ref|YP_003822963.1| integrase family protein [Clostridium saccharolyticum WM1] gi|302197769|gb|ADL05340.1| integrase family protein [Clostridium saccharolyticum WM1] Length = 339 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 52/321 (16%), Positives = 102/321 (31%), Gaps = 41/321 (12%) Query: 67 KPTTLKWLISEYRKS--AHWGSLAVNSRISFESYFDQIIRK--------SGDFDYRKITT 116 KPT L++EY S +++ N+ S+ F +++ + I Sbjct: 2 KPTDFSKLLTEYLTSYLPSLKNVSKNTISSYCDTFRLLLKYCRDVHNLSIEKISMKDIDA 61 Query: 117 KHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 + + E R S+ Q L ++R F++ ++ + C V K + + Sbjct: 62 DLVSQFMLWLEEERHCGISTRNQRLMAIRSFFRYVQGEQPQNLLNCQKVLNIPPKKKSLP 121 Query: 173 PWTKEDMQQFK-------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225 T +++ K + EG + L +G R + V++++ + Sbjct: 122 VVTYLTVEEMKLLLAQPNTSTPEGRRDLALLCILYDTGGRVQEIADLTVRNIRLENPAKV 181 Query: 226 T--QKTGTIITVELPDGFMKLLAMTPIGK---------ETFFINNDKQKMNATQFSIWFK 274 K V L ++LL I F N K+ + S Sbjct: 182 HLTGKGRKSREVPLLPRTVQLLERYMIEHRLLAPEKQDHPLFCNRHNSKLTRSGISYILN 241 Query: 275 AKATKA-------GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 A A + S H +R A AG + G +VD + Y Sbjct: 242 KYAELASSQSLTFPESISPHVLRHTKAMHLLQAGVNIIYIRDILGHASVDTTQIYASANT 301 Query: 328 RIRLGIKNSRRISSVVDSDDP 348 +++ ++ + P Sbjct: 302 QMKRA--ALEKLGDSPAPEFP 320 >gi|261406744|ref|YP_003242985.1| integrase family protein [Paenibacillus sp. Y412MC10] gi|261283207|gb|ACX65178.1| integrase family protein [Paenibacillus sp. Y412MC10] Length = 311 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 40/295 (13%), Positives = 96/295 (32%), Gaps = 24/295 (8%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA---I 134 + A +++ ++ + ++T + + + + + A Sbjct: 17 FLSYMKDREYAKDTQQAYLHDIKHFLNSLEGKPITEVTDIDVMYYLTQVRESGAGARYRN 76 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---Q 191 + +++R+ +K +R + + NP + +E+ K + + ++ + EG + Sbjct: 77 RCQSAIRLFYKVMIRFKLASTNPAMDIEKAKVEKNRQPTYLQKPILDACLNGIEGRYRIR 136 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251 + Y+GLR S+ + V + SI G+ + L + Sbjct: 137 DVTIIALMAYAGLRVSEIVKLNVTDVDMENSSIGVLGKGSKWRYIPLPAELNKLLQMYLE 196 Query: 252 KETFFINNDKQKMNATQFSIWFKAKATK-----------------AGVNKSAHGVRKFSA 294 + ++ +QF + + +G + SAH +R A Sbjct: 197 ERMAPRSSKDNAFFVSQFRRRISKRMVQTIAEKTFAAMTEQFPQLSGQSLSAHKLRHSFA 256 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSRRISSVVDSDDP 348 T GA + G + + + YT D + R ++ S P Sbjct: 257 TELLRNGADLRAVQELLGHEDISTTQIYTHVLDETKERAMNKIRPAIPLLFSSKP 311 >gi|284928595|ref|YP_003422327.1| hypothetical protein Dshi_5002 [Dinoroseobacter shibae DFL 12] gi|251736500|gb|ACT10200.1| hypothtical protein [Dinoroseobacter shibae DFL 12] Length = 308 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 36/285 (12%), Positives = 84/285 (29%), Gaps = 29/285 (10%) Query: 75 ISEYRKSAHWGSLAV-NSRISFESYFDQIIRKSGDFD--------YRKITTKHIRSGVES 125 + + + ++ +++ + D R+IT +R+ + + Sbjct: 14 LETWLTHLRALDDSPASTLSAYQRDVAGFLGFLARHDGGLASPARLRRITQSDMRAWMAA 73 Query: 126 RKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + S + L++++ F+W ++ L+ PK + + RP ++ + Sbjct: 74 ERRRGLGARSLARALSAVKSFFRWVGERDGFEPTAVLAARSPKYQRKLPRPLAEDAALEM 133 Query: 183 KSFW-------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 + ++ L GLR S++ K V Sbjct: 134 IAQVELQAADSWIAARDVAVVTLLYGCGLRISEALGLTGAAAPLPEVLTIRGKGDKERIV 193 Query: 236 ELPDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKAGVN--KSA 286 + + F ++N + + + G+ + Sbjct: 194 PVLPAARTAVDTYLRLSPHPLEKDGPLFRGKRGGQLNPRVIAKVMEQARMQLGLPSSATP 253 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 H +R AT AG + G ++ + YT D RL Sbjct: 254 HAMRHSFATHLLAAGGDLRAIQELLGHASLSTTQAYT-AVDATRL 297 >gi|308069238|ref|YP_003870843.1| Site-specific recombinase XerC [Paenibacillus polymyxa E681] gi|305858517|gb|ADM70305.1| Site-specific recombinase XerC [Paenibacillus polymyxa E681] Length = 318 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 37/293 (12%), Positives = 91/293 (31%), Gaps = 25/293 (8%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---S 131 + + G ++++ ++ Q +R + ++ H+ S + + S Sbjct: 24 LEAFLIWMKDGGYTIHTQKNYMGDVKQFLRTLREKPLDQVKKIHVMSYLSKAREGGAGDS 83 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-- 189 + + ++ FK E + NP +++ K + + + E EG Sbjct: 84 TRNRKHAAVNSFFKALQEFELCSTNPAAGIKKAKTEKNRMPVYLDEKDIHPFLLAVEGKY 143 Query: 190 -SQPRLAFEFLLYSGLRCS---------DSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239 ++ F ++Y GLR S + +T + + Sbjct: 144 ANRNMAIFLLMVYMGLRVGEVHSLNVSDYSRERRTLDVFGKGRKWRTLPVPEAVCDFVEH 203 Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--------HGVRK 291 + L ++ F++ +++ + +KS H +R Sbjct: 204 ALEERLTPWRGKEDAMFVSQKGRRLAVRTIQQIATETFERFQQDKSIERREAYSSHKLRH 263 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 AT+ GA + G ++ YT +R + K ++ + Sbjct: 264 TFATMLLRKGADLRTVQELLGHSSIQTTTVYTHVTNREK--EKAMDKLDIQIP 314 >gi|254283616|ref|ZP_04958584.1| phage integrase family protein [gamma proteobacterium NOR51-B] gi|219679819|gb|EED36168.1| phage integrase family protein [gamma proteobacterium NOR51-B] Length = 355 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 47/323 (14%), Positives = 98/323 (30%), Gaps = 22/323 (6%) Query: 21 IIYYFRKGHGRR--IRLPYPHESTFIPAYMSALT-----GSTPKREYINSPRKKPTTLKW 73 + R G + +L + T A A + RK T Sbjct: 13 VYLRHRNGSNKTAHTKLGTTLDLTLKEARTKARQLKAAIALGADPQADARQRKAVPTWNA 72 Query: 74 LISE-YRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH--- 128 +E Y A A + + ++ + G +IT + ++ + Sbjct: 73 FFTESYLPHAKQ---AKRTWKNDADMHRLRLGPRFGATPINRITRQEVQQFHNELREDGL 129 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS--FW 186 P++A L +R AV + +NP V++ + R + E+ ++ Sbjct: 130 APATADHHLKLLRHALNLAVDWGMLQVNPAAKVKQFNSENLVERYLSDEEFKRLMRVLRD 189 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----TIITVELPDGFM 242 E +LL +G R ++ A + + + V L D Sbjct: 190 HENRPMACIVLWLLATGARSGEAKAATWDDIARDQTVWTIRSEHSKSKKRRAVPLNDIAR 249 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAG 301 +L T ++ S ++ +A + H +R A++ ++G Sbjct: 250 SVLQEIRASGCTSGHLFVGKRGPYKYLSKNWERICEEADLQGLRLHDLRHNYASMLVNSG 309 Query: 302 ATAHELMATYGWKTVDQAETYTK 324 + +E+ G Y+ Sbjct: 310 HSLYEVQQALGHSDPKVTMRYSH 332 >gi|298528636|ref|ZP_07016040.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] gi|298512288|gb|EFI36190.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] Length = 414 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 51/330 (15%), Positives = 103/330 (31%), Gaps = 17/330 (5%) Query: 31 RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVN 90 ++ + T + TT + +Y ++ + Sbjct: 65 KKAQRTGEGALTLAERREMENVRRAEDIKLKKEQEIASTTFNIIWEKYFLNSQHEKAYKS 124 Query: 91 SRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWA 147 Y I G+ + K+T H+ + + +P S L+ +R +F +A Sbjct: 125 WDTERHLYKKWIQPFIGEVFFTKVTAFHLEKIKKEMRDASLSPRSIGYALSVVRQVFCYA 184 Query: 148 VRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-RLAFEFLLYSGLR 205 ++P V+ P IR T + + SQ L+ G R Sbjct: 185 SDHGIFEGVDPVSLVKMPHYDNRRIRFLTHSEAEILLDVLCFSSQNTHDIALIALHCGPR 244 Query: 206 CSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK 263 + Q + + + + K + + + K+L + + + D+ Sbjct: 245 AGEIFSLTWQDIDFSQGLVTFRDTKNKYVRHIPITKRVRKMLERRSDDRSSALVFPDRNG 304 Query: 264 MNATQFSIWFKAKATKAGVNKS---------AHGVRKFSATISADAGATAHELMATYGWK 314 + S F+ + G NK H +R A+ AG + + G K Sbjct: 305 GRRKKVSKAFERTIKELGWNKGIDDPRQKVVFHTLRHTCASWLVMAGVPLYTVKEYLGHK 364 Query: 315 TVDQAETYTKGA-DRIRLGIKNSRRISSVV 343 + Q E Y A D ++ + +I+S Sbjct: 365 QISQTERYAHLAPDSLKQATEALNKINSHK 394 >gi|153009491|ref|YP_001370706.1| phage integrase family protein [Ochrobactrum anthropi ATCC 49188] gi|151561379|gb|ABS14877.1| phage integrase family protein [Ochrobactrum anthropi ATCC 49188] Length = 297 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 62/291 (21%), Positives = 118/291 (40%), Gaps = 13/291 (4%) Query: 60 YINSPRKKPTTLKWLISEYRKSAHWG----SLAVNSRISFESYFDQIIRKSGDFDYRKIT 115 S KP ++ WL+S Y + + + + + +++I I Sbjct: 2 QKASEVAKPKSISWLVSSYLEYLEASVVAGTSSGKTLKKKRNLLNRLIEN--PDRVMLIP 59 Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 + + + TP+ A F+ ++ V++ WA ++ V+ NP +++ K +G PW Sbjct: 60 QEKLIEMQDKMGSTPAQADAFIEAVGVMYDWAKKRNLVSSNPAKGIDKVYIKGDGAIPWK 119 Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD--SCRAGVQHLQNNIFSIKTQKTGTII 233 +D+++F + GS+ +A LL++G R D + + I +++ Q + Sbjct: 120 ADDVKKFFAKHKPGSKAHVAMSVLLWTGCRIEDLAVLGRKNECVIEGIEAVRWQPSKKGS 179 Query: 234 TVELPDGFMKLLAMTPIGKETFFINN----DKQKMNATQFSIWFKAKATKAGVN-KSAHG 288 + L T K + S FK A + SAHG Sbjct: 180 SEVSVPLLPALKTATCTPTVQGGTYVLGRGGKPFASGDSMSAMFKRWCKDADLPLLSAHG 239 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 VRK A + A+ G + +E+MA G +E YT+ +R +L + R+ Sbjct: 240 VRKGLAELLAEQGCSQYEIMAILGHSEAKTSEVYTRRVERWKLALGAVERV 290 >gi|83944457|ref|ZP_00956910.1| site-specific integrase/recombinase [Sulfitobacter sp. EE-36] gi|83844659|gb|EAP82543.1| site-specific integrase/recombinase [Sulfitobacter sp. EE-36] Length = 353 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 45/328 (13%), Positives = 88/328 (26%), Gaps = 22/328 (6%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 RT+ ++ Y G R R F A A+ N+ R TL Sbjct: 4 RTKKTRVYQYDIVVGGHRFR-GSCGTEDFEAA--KAVEADIRANAKRNAARGSDYTLSEA 60 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSS 132 + Y G + + S + G K+T I + S+ Sbjct: 61 LGTYINDKIVGRPSEGTTKSQARVILSHMD--GKKRLSKLTDADITQYAAKHRATCANST 118 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 + L + + + Y P + ++ + K R +Q + F + + Sbjct: 119 VNRHLQMLGRALRHMGK-VYKTEIPDIDLKAAETKEPRERVRELTTDEQTRLFAALPQEF 177 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL------- 245 F L +G R S + + I + G + + +G + L Sbjct: 178 HPMVAFALMTGARISTITGLLWRDVDMPHREITFRLKGDELMIFPINGELAALLSALPKS 237 Query: 246 ------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISA 298 + + + F ++ A ++ H +R AT Sbjct: 238 NVMESRRYVFTRVDGHSAERIQIIASGGVFGTVWRKALLDAAIDNFRFHDLRHTFATRML 297 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGA 326 + G ++ Y Sbjct: 298 RKTQNISLVSKLLGHTNIETTSRYAHVL 325 >gi|319406320|emb|CBI79957.1| integrase/recombinase XerC [Bartonella sp. AR 15-3] Length = 321 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 37/277 (13%), Positives = 80/277 (28%), Gaps = 30/277 (10%) Query: 78 YRKSA-HWGSLAVNSRISFESYFDQI----IRKSGDFD----YRKITTKHIRSGVESRKH 128 + +AV++ +++E Q + G + +R+ + R+ Sbjct: 28 WLDHLTQTRRMAVHTVVAYERDTRQFLFFLCKHLGYQPTLNDLADLRVADLRAYLAYRRT 87 Query: 129 T---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK-------ED 178 S + + S+R F + R++ V + V PK + T + Sbjct: 88 QNINARSLSRNMASLRSFFNYLSREQLVNVPAAKLVRTPKYPKSLPKSLTIESALRIVRE 147 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--IKTQKTGTIITVE 236 Q ++ ++ L G+R S++ + + T K G + Sbjct: 148 DNQQETEPWIIARNTAILILLYGCGMRISEALALTPEKFSDPNIKSLPITGKGGKTRLIP 207 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQ-------KMNATQFSIWFKAKATKAGVNKS--AH 287 L + +NN + + G+ ++ H Sbjct: 208 LIPIAHTAIKNYLKCCPYPLVNNQPIFRGVRGKPLQPAIIQRTVQNLRAHLGLPETTTPH 267 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT G + G + + YT Sbjct: 268 ALRHSFATHLLSRGGDLRTIQELLGHACLSTTQIYTH 304 >gi|217975041|ref|YP_002359792.1| tyrosine recombinase XerC [Shewanella baltica OS223] gi|217500176|gb|ACK48369.1| tyrosine recombinase XerC [Shewanella baltica OS223] Length = 306 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 32/275 (11%), Positives = 88/275 (32%), Gaps = 20/275 (7%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRKHTP 130 Y + L+ ++ ++ ++ + + + + + S + + +P Sbjct: 19 FERYLSTE--RQLSAHTVRNYLYELNRGSDLLPEGVHLLNVSREHWQQVLSKLHRKGLSP 76 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 S L++++ ++ +R+ + +NP + PK+ + + + Sbjct: 77 RSLSLCLSAVKQWGEFLLREGVIELNPAKGLSAPKQAKPLPKNIDVDAISHLLDIEGTDP 136 Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA 246 + + E SGLR ++ + +Q ++ ++ K V + + L Sbjct: 137 LSLRDKAMMELFYSSGLRLAELAALNLSSVQYDLKEVRVLGKGNKERIVPVGRLAIAALL 196 Query: 247 MTPIGKETFFINNDK-------QKMNATQFSIWFKAKAT--KAGVNKSAHGVRKFSATIS 297 ++ ++ ++++ V H +R AT Sbjct: 197 NWLNCRKQIPCEDNALFVTEKGKRLSHRSIQARMAKWGQEQALSVRVHPHKLRHSFATHM 256 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 +A A + G + + YT D L Sbjct: 257 LEASADLRAVQELLGHANLATTQIYT-SLDFQHLA 290 >gi|313906097|ref|ZP_07839448.1| integrase family protein [Eubacterium cellulosolvens 6] gi|313469086|gb|EFR64437.1| integrase family protein [Eubacterium cellulosolvens 6] Length = 281 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 41/272 (15%), Positives = 93/272 (34%), Gaps = 23/272 (8%) Query: 74 LISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH------IRSGVESR 126 I EY + N+ IS++ + + +E Sbjct: 5 AIQEYITYLHDVKKTSYNTEISYKRDLKNAAAYLEEQRVSSFESATETNLYSYMLYLERE 64 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK--- 183 K + ++ + + S+R +++ +R+ + +P ++ P+ + + T ++ + Sbjct: 65 KKSAATVSRSIASLRSFYQYLLREHKIDKDPSEHLKAPRVEKKVPEILTIDEADRLLAQP 124 Query: 184 -SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242 ++G + R + L +G+R S+ ++ + ++ I ++ + + G Sbjct: 125 DRKKNKGLRDRAMLQLLYCTGIRVSELVHMKMEDVNLDLGYITCRENSRERIIPMTQGTR 184 Query: 243 KLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 +L E F N +M+ F K A AG+ K + H +R Sbjct: 185 IILDEYLESARDSLLKGKESEYLFCNCSGGEMSRQGFWKVLKVYAQDAGIKKDITPHTMR 244 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETY 322 A G H + G V + Y Sbjct: 245 HSFAAHQLQKGTDIHSVQRMLGHAGVTTMQMY 276 >gi|299536245|ref|ZP_07049558.1| prophage Lp3 protein 1, integrase [Lysinibacillus fusiformis ZC1] gi|298728231|gb|EFI68793.1| prophage Lp3 protein 1, integrase [Lysinibacillus fusiformis ZC1] Length = 388 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 57/393 (14%), Positives = 119/393 (30%), Gaps = 55/393 (13%) Query: 1 MTPSLRLPPFVTKERTRHGKIIYYFRKG------HGRRIRLPYPHESTFIPAYMSALTGS 54 MT + P + + + GK +Y F+ G+ T A AL Sbjct: 1 MTKNNSSP--IKSYQNKDGKTLYKFQVYLGVDELTGKAHSTTRRGYKTKKEA-ELALARI 57 Query: 55 TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNS-RISFESYFDQIIRKSGDFDYRK 113 + +K T + + + ++ ++ + + + I+ G + K Sbjct: 58 KLQVSEGTYKQKSTETYQEVYDLWITQYE-KTVEESTFVKTVGYFKNHILPSMGSYRIEK 116 Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 IT + A + + + +A+ ++ NP VE +K Sbjct: 117 ITIAICQKHYNEWASKVKKARTIKSYAKKVLDFAIVHGFIQTNPFTHVETKVKKAFTEST 176 Query: 174 WTKEDMQQFKS---------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 + + K + F + Y+G+R S++ + I Sbjct: 177 EDENENFYTKEELISFLEKAKDHLNYKAYTLFRLIAYTGMRKSEALALTWNDVNFVENEI 236 Query: 225 KTQKTG----------------TIITVELPDGFMKLLAMTPIGKET-------------- 254 K T++L + + +L ++ Sbjct: 237 TINKAIGRGKQTQLYLKTTKTGKPRTIKLDETTLSILKEWNKLQKQQYIQLGINTLKKNQ 296 Query: 255 -FFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYG 312 F N + Q W + K + K S HG+R ++ +AGA+ E+ G Sbjct: 297 LMFSNTKNDFIQPGQVQKWMYSVQNKYTLKKVSPHGLRHTHCSLLFEAGASIKEVQDRLG 356 Query: 313 WKTVDQA-ETYTKGADRIRLGIKNSRRISSVVD 344 V + YT + + G ++ S ++ Sbjct: 357 HSDVKTTLDIYTHVTKKAKEG--AIQKFVSYLE 387 >gi|298482054|ref|ZP_07000243.1| tyrosine recombinase [Bacteroides sp. D22] gi|298271918|gb|EFI13490.1| tyrosine recombinase [Bacteroides sp. D22] Length = 376 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 54/306 (17%), Positives = 98/306 (32%), Gaps = 25/306 (8%) Query: 35 LPYPHESTFIPAY--MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSR 92 L + AY SAL + PK+ SP P Y ++ + ++ Sbjct: 61 LSGFFDRHVETAYINYSALKNTLPKKSGKTSPAIPPG--------YAETLRQLRYSEHTV 112 Query: 93 ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS----SAIQFLTSMRVLFKWAV 148 ++ YF + + + R I + I + + T + S++ F Sbjct: 113 RAYTVYFREFQQYFAGRNLRYIRPEEINAYIVHLIDTRRISSCQQNLRINSIKFYF---- 168 Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208 + C V+R KR+ +KE+++ + F L +GLR S+ Sbjct: 169 EKVLGQERKCYEVKRAKRERTLPDVLSKEEIKSILDATGPDIRLFCMFSLLYSAGLRISE 228 Query: 209 SCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMT---PIGKETFFINNDKQK 263 + + ++ K L ++ L +E F + Sbjct: 229 LLDLKPHDINVSRSLIRVRQGKGRKDRYTLLSKPLVRKLTEYTKLYKPQEWLFERYKGEP 288 Query: 264 MNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321 + S K A +AG+ K H +R AT + G + G + E Sbjct: 289 FTESIVSKKLKEAAKEAGITKRVYPHLLRHSFATHLIEQGTDLKIVKELLGHNQLKTTEM 348 Query: 322 YTKGAD 327 Y AD Sbjct: 349 YVHIAD 354 >gi|239906838|ref|YP_002953579.1| tyrosine recombinase XerD [Desulfovibrio magneticus RS-1] gi|239796704|dbj|BAH75693.1| tyrosine recombinase XerD [Desulfovibrio magneticus RS-1] Length = 285 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 43/270 (15%), Positives = 83/270 (30%), Gaps = 20/270 (7%) Query: 84 WGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTP---SSAIQFLT 138 L+ +S ++ + + D T + + + + S + L+ Sbjct: 2 ARGLSEHSIAAYSTDIVGFLIFLNDHGAALEATTDETVLLYLMHLRSRGLASRSLARHLS 61 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRL 194 ++R F +A + +++ +P +E PK ++E++ + G + R Sbjct: 62 ALRGFFAFAADESWLSASPAALIENPKLPRLLPDVLSREEVTRLLDAPDTATPLGYRDRT 121 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKE 253 E L +GLR S+ + ++ + M+ L+ Sbjct: 122 MLELLYAAGLRVSELVGLTLADFDAQAGLLRVFGKGSKERVTPIHSLAMEFLSTYLSSIR 181 Query: 254 TFFINNDKQKM--------NATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303 F D+ K A A V S H +R AT D GA Sbjct: 182 GAFGPKDQHVFLNRSGKGLTRQAVWKGIKRYALAAQVSTRISPHSLRHSFATHLLDGGAD 241 Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGI 333 + G + E YT L + Sbjct: 242 LRTVQMLLGHADISATEIYTHVQAGRLLAV 271 >gi|332039045|gb|EGI75469.1| tyrosine recombinase XerD subunit [Hylemonella gracilis ATCC 19624] Length = 322 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 47/300 (15%), Positives = 90/300 (30%), Gaps = 44/300 (14%) Query: 71 LKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSG 122 + I + + L+ N+ ++ R + + + Sbjct: 17 VDAFIDALWLEE----GLSRNTLAAYRRDLALYARWLAEPREGKASQTLDASGEPDLNAY 72 Query: 123 VESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 +R ++A + LT + F+WAVR+ + +P L + K+ + ++ ++ Sbjct: 73 FAARHAQTRATTANRRLTVFKRYFRWAVRERRIQADPTLRLLSAKQPLRVPKTLSEAQVE 132 Query: 181 QFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITV 235 + G + R E + SGLR S+ + ++ N ++ V Sbjct: 133 ALLAAPDAATPLGLRDRAMLELMYASGLRVSELVGLKIFNVGLNEHVLRVTGKGSKERLV 192 Query: 236 ELPDGFMKLLAMTPIGKETF----------------------FINNDKQKMNATQFSIWF 273 + + + + M F Sbjct: 193 PFGEVAADWMRRYLHEARPELLGQVGASPRAAKQTDDLFVTLRGSRAGEAMTRVMFWSLV 252 Query: 274 KAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 K A AGV S H +R AT + GA + G + YT A R RL Sbjct: 253 KKYAVIAGVTSPLSPHTLRHAFATHLLNHGADLRAVQMLLGHADISTTTIYTHVA-RERL 311 >gi|329851121|ref|ZP_08265878.1| tyrosine recombinase xerD [Asticcacaulis biprosthecum C19] gi|328839967|gb|EGF89539.1| tyrosine recombinase xerD [Asticcacaulis biprosthecum C19] Length = 315 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 38/295 (12%), Positives = 90/295 (30%), Gaps = 28/295 (9%) Query: 75 ISEYRKSAHWGSLAVN-SRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGVESRKH 128 + ++ + A + ++ D ++ G + R Sbjct: 19 VRQFLQMMAVERNAARPTLDAYGRDLDDLMATCKVTPQGLLGLSDGDLAGYFQDLSERGL 78 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE-----DMQQFK 183 SS + +++R +++ V + +P + K+ + + +++ Sbjct: 79 ASSSLQRKRSAVRQFYRFCVAENLTGHDPSRKIAAAKKGLKLPKILSRDEVDALIAAADA 138 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFM 242 ++ + E SG+R S+ + + + I K G V L Sbjct: 139 IAPNQAVRLECLIEMAYASGMRISELVGLKLDAVARDPACLIIKGKGGVERLVPLNPSAR 198 Query: 243 KLLAMTPIGKETFFI------------NNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287 + + TF + + + A AG++ S H Sbjct: 199 AAIKEYLDIRYTFLPAGDKANPYLFSSRGKEGHLTRRRVGQLLDQAAINAGIDPARVSPH 258 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSRRISS 341 +R AT + GA + G + + YT A +R+R ++ ++ Sbjct: 259 VLRHAFATHLLEGGADLRVVQTLLGHADISTTQIYTHVAGERLREVVETHHPLAK 313 >gi|153933244|ref|YP_001385294.1| phage integrase family site specific recombinase [Clostridium botulinum A str. ATCC 19397] gi|152929288|gb|ABS34788.1| site-specific recombinase, phage integrase family [Clostridium botulinum A str. ATCC 19397] Length = 387 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 52/384 (13%), Positives = 109/384 (28%), Gaps = 59/384 (15%) Query: 16 TRHGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 T++GK Y R +G+ IR + S + + + K Sbjct: 8 TKNGKQYYRVTASIGRDANGKLIRKEFYGASK--KEAENKRDEYLNGIKNGLNIDYKNII 65 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESRKH 128 L L+ + + +S +E + I+ + + T ++ + Sbjct: 66 LGELMHTWLFEIMRVKVKPSSFERYEGIYRNYIKNSQLFGLKLADLKTIQVQRYYNELYN 125 Query: 129 TPSSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKR----KTEGIRPWTKEDMQQ 181 ++ +R F +AV + Y+ NPC + + + Sbjct: 126 NGKTSNVIKNLNKLLRTFFNYAVNEGYILKNPCSGSKIIIPGGKDMEVKEIEIFTDKEIK 185 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD-- 239 EG++ + L SGLR + + IK K+ + + D Sbjct: 186 ALKKQLEGNRLKCLILLALGSGLRQGELLALRWDDIDFKTNEIKVTKSIKRVKIIENDGT 245 Query: 240 -----------------------------GFMKLLAMTPIGKETFFINNDK--------Q 262 K L I + + + Sbjct: 246 GKRKTIEQSPKSIKSNRVVPIPSKLINALEEHKALQEKEIKEAGCSYVDKNLVFATKLGK 305 Query: 263 KMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAE 320 + ++ +A + K H +R AT + + G K + A+ Sbjct: 306 PIVVKNLFESYRRILIRAKIPHKKFHALRHTYATKLFEKDVQLKTVQKLLGHKNISITAD 365 Query: 321 TYTKGADRIRLGIKNSRRISSVVD 344 TYT + + I + +++ + D Sbjct: 366 TYTHVMPKEK--ISAADKLNDLFD 387 >gi|119898154|ref|YP_933367.1| phage integrase family site specific recombinase [Azoarcus sp. BH72] gi|119670567|emb|CAL94480.1| site-specific recombinase, phage integrase family [Azoarcus sp. BH72] Length = 358 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 52/339 (15%), Positives = 109/339 (32%), Gaps = 26/339 (7%) Query: 11 VTKERTRHGKII-YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 +TK + +HG R + A A T + + K Sbjct: 4 ITKRQGKHGTTYKVQIRLKGYPAETATFDR---LSDARTWAAQTETAIKAGKHFGVAKRR 60 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129 TL L +Y ++ ++ S + + + G ++ I + Sbjct: 61 TLHELAEKYEQAVAD---SLKSFEARRGHLAYWRQAFGSSALADVSPALIAEHRDRLTKR 117 Query: 130 P--------SSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 ++ +++ ++ LF +AV++ ++V NP V + +R + ++ Sbjct: 118 TTERGTVSLATVNRYIATLSALFTFAVKELQWVEANPVERVRKFGESPGRVRYLSDQERA 177 Query: 181 QFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIIT 234 + E P L A L +G R ++ Q + +I K G Sbjct: 178 ALLTACRESRNPYLYPAVVLALSTGARQAEITTLRWQQVDFARRTIVLREGETKNGAGRV 237 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW---FKAKATKAGV-NKSAHGVR 290 + L + LL ++ F+ + +AG+ + H +R Sbjct: 238 LPLTGEALDLLRDLAKVRDIRDDRVFPVASTTRAFNSIKGAWDGAVKRAGISDFRWHDLR 297 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +A+ AG + E+ G KT+ Y+ + Sbjct: 298 HTAASYLTMAGIGSMEVAKVLGHKTLQMTARYSHLSPER 336 >gi|268611812|ref|ZP_06145539.1| phage integrase family site specific recombinase [Ruminococcus flavefaciens FD-1] Length = 366 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 48/356 (13%), Positives = 110/356 (30%), Gaps = 42/356 (11%) Query: 6 RLPPFVTKERTRH--GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63 + + K + G++ ++ ++ R Y + M+ L + Sbjct: 3 KRGSNIYKRKDGRFEGRVHVGYKADGSKKYRSVYGKTLAEVKEKMADLYAV----RTEKN 58 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG 122 T++ ++ +A + +S ++E+ + I+ G +TT I Sbjct: 59 ISAIRLTVREAADQWLSAARLR-VKESSYANYENILNNHILPILGGEYISSLTTGRINDF 117 Query: 123 VESR----------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 + + + + +T R + ++ R+ + + + + Sbjct: 118 IHYKLTNGRLKGQGGLSAKTVRDIMTVYRSVERYVYREYGIRETNFTMPKTESGNADVLN 177 Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 ++ ++ + + + LA L++GLR + C + + ++ ++T Sbjct: 178 CEERKKLESYLIKNMD--RTNLAVLLCLFTGLRIGELCGLKWEDIDFEKNTLSVKRTVQR 235 Query: 233 --------------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272 TV +P M LL F I N + Sbjct: 236 VSRNGKSQVIIGSPKSRTSIRTVPIPIFMMALLRKFRSIDSLFVITNLSKPTEPRTMQNR 295 Query: 273 FKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA 326 FKA G+ N + H +R AT+ + G L G Y + Sbjct: 296 FKAILKLCGIRNVNFHSLRHTYATVCIEKGFDPKALSELLGHADASITLNRYVHSS 351 >gi|116252427|ref|YP_768265.1| integrase/recombinase protein [Rhizobium leguminosarum bv. viciae 3841] gi|116255538|ref|YP_771371.1| putative integrase/recombinase protein [Rhizobium leguminosarum bv. viciae 3841] gi|115257075|emb|CAK08169.1| putative integrase/recombinase protein [Rhizobium leguminosarum bv. viciae 3841] gi|115260186|emb|CAK03290.1| putative integrase/recombinase protein [Rhizobium leguminosarum bv. viciae 3841] Length = 292 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 32/262 (12%), Positives = 85/262 (32%), Gaps = 17/262 (6%) Query: 80 KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQ 135 + + ++N+++++ R + + +R +K PSS Sbjct: 10 EDMQVRNFSLNTQLAYLQQVSLFARYFSKSP-DLLGREDVRIYQVYLANEKKLAPSSIHT 68 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195 ++++R L+K + +++V ++P + + +++Q F + Sbjct: 69 AISALRFLYKVTLERDWVPEEVLPLPKKP---QKLPIILSPDEVQHFLG-CVLDPKHHAI 124 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKE 253 +GLR S++ + + + ++ K V L +++L + Sbjct: 125 LTTCYAAGLRISEAVQLKPTDIDSQRMVVRVEQGKGQKDRYVMLSPKLLEILRDYWKMRR 184 Query: 254 TFFINNDK----QKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSATISADAGATAHEL 307 Q + ++ + H +R A +AGA + Sbjct: 185 PKAWLFPGDRAGQPITRDAVGEACAKAHNLSRLSKPVTPHSLRHAFAVHLLEAGADVRTI 244 Query: 308 MATYGWKTVDQAETYTKGADRI 329 G +++ Y + A Sbjct: 245 QLLLGHRSLATTAHYLRIATNK 266 >gi|307322976|ref|ZP_07602243.1| integrase family protein [Sinorhizobium meliloti AK83] gi|306891378|gb|EFN22297.1| integrase family protein [Sinorhizobium meliloti AK83] Length = 292 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 34/262 (12%), Positives = 85/262 (32%), Gaps = 18/262 (6%) Query: 80 KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQ 135 + + ++N++ S+ R G + + IR+ +K P+S Sbjct: 10 EDMQVRNFSLNTQHSYLQQVSLFARHFGKSP-DLLGREDIRTYQVYLANEKKLAPNSIHI 68 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195 ++++R F + +++V L P++ + + +++QQF + Sbjct: 69 AISALRFFFSVTLERDWVPEEVLL----PRKPQKLPIILSPDEVQQFLG-CVLDLKHHAI 123 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKE 253 +GLR S++ + + ++ K V L +++L + Sbjct: 124 LTTCYAAGLRISEAVHLKTTDIDSQRMVVRVEQGKGQKDRYVMLSPKLLEILRDYWRMRR 183 Query: 254 TFFI----NNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSATISADAGATAHEL 307 + + ++ + H +R A +AGA + Sbjct: 184 PKEWLFPGDRTGHPITRDAVGQACAKAHDLSRLSKPVTPHSLRHAFAVHLLEAGADVRTI 243 Query: 308 MATYGWKTVDQAETYTKGADRI 329 G +++ Y + A Sbjct: 244 QLLLGHRSLATTAHYLRIATNK 265 >gi|299141119|ref|ZP_07034256.1| tyrosine recombinase XerD [Prevotella oris C735] gi|298577079|gb|EFI48948.1| tyrosine recombinase XerD [Prevotella oris C735] Length = 293 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 37/275 (13%), Positives = 97/275 (35%), Gaps = 24/275 (8%) Query: 75 ISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKHT 129 I ++ + + + + ++ + D + + +R+ +E Sbjct: 3 IDKFLDYLRFECNRSELTVKNYGDDLRSFEKFFRDLKNPVSWESVDLDVVRNWMERMMDE 62 Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ----- 181 +S + L+++R +++A+ ++ V +P + PK+ + +++M + Sbjct: 63 GNNAASINRRLSALRSFYRFALSRKLVDKDPVHGITGPKKGKPLPQFLKEKEMDRLLERE 122 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDG 240 + + E + R +G+R S+ + + + T K + + Sbjct: 123 YWTRSFEDVRDRAIIMTFYETGIRLSELTGLDDKMVDFAEYQLKVTGKRNKQRIIPFGEE 182 Query: 241 FMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGVR 290 L ++ F+ ++ Q+M+A+ K +K +S H +R Sbjct: 183 LCTTLRDYMESRDREVGRLSEALFVTDEGQRMSASLVRERVKRSLSKVCTLKKRSPHVLR 242 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 AT + A + G +++ E YT Sbjct: 243 HTFATAMLNHKAGIESVKKLLGHESLSTTEIYTHT 277 >gi|261379271|ref|ZP_05983844.1| tyrosine recombinase XerC [Neisseria subflava NJ9703] gi|284797703|gb|EFC53050.1| tyrosine recombinase XerC [Neisseria subflava NJ9703] Length = 298 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 44/267 (16%), Positives = 92/267 (34%), Gaps = 17/267 (6%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI-TTKHIRSGVESRKHTP--- 130 + Y K+ + ++ ++ +++R D + T + + ++ Sbjct: 11 LERYLKTLSQQGKSQHTVSAYRRDLSELMRLLPDNLENGLPTRRDFVAVLKKLSQKGLSE 70 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 SS + L++ R W V+ E + +P +++ P+ + +E + Sbjct: 71 SSLARKLSAWRQYCSWLVQIEVMESDPTFNMKAPRLPERLPKALLQEPLNHILDHAPVDD 130 Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAG-VQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 + + FE + SGLR S+ + + + K G V L + L Sbjct: 131 ELDVRDKAMFELMYGSGLRLSEIQGLNLNSIVLDEGWVSVNGKGGKQRQVPLVGKSIAAL 190 Query: 246 AMT------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297 G++ F N + ++ Q +A A + G + S H +R AT Sbjct: 191 RDYLAVRIAKEGEQALFTNKNGGRLGQRQIQKRLQAWAVRVGSASHISPHMMRHSYATHL 250 Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324 A + G + + YTK Sbjct: 251 LQASGDIRAVQELLGHSNLSATQVYTK 277 >gi|86159117|ref|YP_465902.1| tyrosine recombinase XerC [Anaeromyxobacter dehalogenans 2CP-C] gi|85775628|gb|ABC82465.1| Tyrosine recombinase XerC [Anaeromyxobacter dehalogenans 2CP-C] Length = 342 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 46/286 (16%), Positives = 88/286 (30%), Gaps = 30/286 (10%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTPSS 132 Y S + ++R +++ Q D + +R + + + Sbjct: 18 FDAYLASE--KRASPHTRKAYQVDLAQYAAYLADQGQPLVPSSPALVRGFLARQAGAAGA 75 Query: 133 AI--QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED------MQQFKS 184 + L+++R L+++ VR+ NP +V PKR +E+ Sbjct: 76 VSLGRKLSALRSLYRFLVREGLAPGNPARAVASPKRPKRLPEVLPEEEVAALVETPDAAG 135 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMK 243 + R E L SGLR S+ ++ L ++ K V + Sbjct: 136 EAPLALRDRAFLELLYGSGLRVSELTGLDLEDLDLAGGLVRVLGKRNKERIVPFGAPAAE 195 Query: 244 LLAMTPIGKETF--------------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AH 287 L G F+N ++ + + +G+ + H Sbjct: 196 ALRRYLDGARPVLAAGPDHAGAAEAVFLNFRGGRLTSRSVARRLDGWVLASGLPRHVHPH 255 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 +R AT GA + G ++ + YT D RL Sbjct: 256 VLRHCFATHLLGNGADLRGIQELLGHASLSTTQRYTH-LDWKRLAA 300 >gi|296110353|ref|YP_003620734.1| site-specific recombinase, phage integrase family [Leuconostoc kimchii IMSNU 11154] gi|295831884|gb|ADG39765.1| site-specific recombinase, phage integrase family [Leuconostoc kimchii IMSNU 11154] Length = 304 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 40/280 (14%), Positives = 90/280 (32%), Gaps = 29/280 (10%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRKH 128 L Y S + + ++ S D+ I G ++R + +R + Sbjct: 7 QLYRIYLVSE--RQYSPLTLKAYLSDIDEFINFLAQNGGFTNFRAVQPLDVRVYLNDLYE 64 Query: 129 T---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ---- 181 +S + ++S+R+ +++ V ++V NP ++ K + + + +M Sbjct: 65 RHLARTSISRKISSLRMFYQFMVANQFVIDNPFENIALRKHQNHLPEFFYETEMATLFDT 124 Query: 182 -FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD 239 + + EFL +G R ++ + L + + K V Sbjct: 125 AYNQEDKLWQRNAALLEFLYATGARVTEIATLTIAQLDFSQRLVLIHGKGNKDRYVPFGH 184 Query: 240 GFMKLLAMT------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285 + L P + F+N+ + + A + ++ + Sbjct: 185 FAAQALMQYLSETRADLTAKQPAPHQVVFVNHRGEPITAAGITYILNQLMQRSALTGKIH 244 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 H +R AT + GA + G + + YT Sbjct: 245 PHMLRHTFATHLLNNGADMRTVQELLGHVNLSTTQMYTHV 284 >gi|158520305|ref|YP_001528175.1| integrase family protein [Desulfococcus oleovorans Hxd3] gi|158509131|gb|ABW66098.1| integrase family protein [Desulfococcus oleovorans Hxd3] Length = 403 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 44/336 (13%), Positives = 104/336 (30%), Gaps = 29/336 (8%) Query: 13 KERTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYINSPRKKP--- 68 + + Y+ +K +G+ + + + + + +++P K Sbjct: 12 RYLQKRDNTFYFRKKHNGKVFKRSLNTTDKRTARDLRNFYLRNLVEYGQLDAPEKVDYDV 71 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK 127 T + E+ S H + ++ + S + I+ D +IT + K Sbjct: 72 ITFGEVAKEW-ASIHKKEVRYSTWPDYVSSMNGHILPNFKDMPIAEITYGDVLKFRSGLK 130 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 A L M+ +F +A R+ + N ++R + I P++ +++ + Sbjct: 131 VGAKRANNILVPMKSVFDYADREGIIQDNVMRKIKRLSEEAPEIHPFSYDEVNRLLDAVH 190 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---------------I 232 QP L ++G+R + ++ Sbjct: 191 PWYQPYLIVA--FFTGMRAGEQNGLCWSDFLEDMQPEPRIFIRKTYVYKKDGIPKTKKSK 248 Query: 233 ITVELPDGFMKLLAMTPI---GKETFFINNDKQKMNATQFSI-WFKAKATKAGVNKSAH- 287 ++ ++ L+ + F+ D ++M + KAG+ Sbjct: 249 RYIKCLPQVLEALSEQRKLTGKNKHIFLTIDGRRMTPDHIRKEVWIPALEKAGIEYRPPI 308 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQA-ETY 322 R AT+ AG + G ++ + Y Sbjct: 309 QTRHTFATMMLSAGEDIGWVQNMLGHSSLQMIFQRY 344 >gi|306821127|ref|ZP_07454743.1| integrase XerD [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550820|gb|EFM38795.1| integrase XerD [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 329 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 27/307 (8%), Positives = 78/307 (25%), Gaps = 43/307 (14%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT------TKHIRSGV--- 123 I + ++ + N+ S+ K +I Sbjct: 20 AYIKSFLEALVSSGKSKNTISSYFRDLKVFFDFKKSNPLLKKYKLEKLKPINITMYYSYL 79 Query: 124 -ESRKHTPSSAIQFLTSMRVLFKWAVRQEY-----------VAINPCLSVERPKRKTEGI 171 ++++ S + +++ ++ E + + + P Sbjct: 80 VADKQNSAVSIKRKKYVLKLFLEYLFEMEILEKTPIPKESVIKSKIKNNSKIPTYLEIEE 139 Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 + ++ S+ L++GLR S+ + ++ + G Sbjct: 140 IQKINQSIRDLYDDEFIRSRNFFIINLFLHTGLRISELVSLDFKDMEKTKKTDYLTVIGK 199 Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKM------------------NATQFSIWF 273 + + L+ ++ + + Sbjct: 200 GNKERIIPINVDELSKELGDEDNLIKVYLDDRKFIKSNTDALFISKKGGRLTQRYIQMEL 259 Query: 274 KAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 K + ++K + H +R AT GA + G ++ + YT + Sbjct: 260 KKIIAYSNIDKRITPHKLRHTFATHFLKNGANLRIVQEILGHSSISTTQIYTHS--DKQD 317 Query: 332 GIKNSRR 338 + ++ Sbjct: 318 LVNAMKK 324 >gi|226355111|ref|YP_002784851.1| Tyrosine recombinase xerC-like protein [Deinococcus deserti VCD115] gi|226317101|gb|ACO45097.1| putative Tyrosine recombinase xerC-like protein [Deinococcus deserti VCD115] Length = 379 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 58/371 (15%), Positives = 106/371 (28%), Gaps = 43/371 (11%) Query: 1 MTPSLRLPPFVTKERTRHGKIIYYFRKGHGR--RIRLPYPHESTFIPAYMSALTGSTPKR 58 M ++ + + G Y G+G + + Y T A + + Sbjct: 1 MAKRANGEGYIGRRKDGSG-WGGYVTLGYGPDGKQQRRYFSAKTQAEAREKLQALVSERN 59 Query: 59 EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTK 117 S + TL + + + N+ S+E I + G K+T Sbjct: 60 GGCLSS--ETLTLAAYLDRWLTHKQ-RDVKFNTHRSYEMTARVHIKPRLGKVQLDKLTPL 116 Query: 118 HIRSGVESRKHTPSSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 HI V + SA L +R AVR + V N SV PK + ++ W Sbjct: 117 HIEELVSALLAEGQSAKVALGCVKLLRTALTQAVRWQLVGRNVAQSVTPPKHTPKEMQVW 176 Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----- 229 T ++ +F + + F L +G+R + + + ++ Q Sbjct: 177 TPDEASRFL-AVAREHRLYALFYLALATGMRRGELLGLKWESINMLAGTLVVQHNLIDRV 235 Query: 230 -----------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQK--------------M 264 + T+ L ++ L + ++ M Sbjct: 236 SSVTLETPKTRASRRTIALSPDTVEALRAHRHSQWLEQCKAGEKWQEHGMVFPSDVGTLM 295 Query: 265 NATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETY 322 F+ KA V H +R SA++ A + G Y Sbjct: 296 FPANLMGAFRRLCAKARVPAIRLHDLRHTSASLLIRANVPPKVVADRLGHTDPGFTLRVY 355 Query: 323 TKGADRIRLGI 333 + R Sbjct: 356 AHVYEEQRRAA 366 >gi|323143711|ref|ZP_08078381.1| site-specific recombinase, phage integrase family [Succinatimonas hippei YIT 12066] gi|322416514|gb|EFY07178.1| site-specific recombinase, phage integrase family [Succinatimonas hippei YIT 12066] Length = 355 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 51/341 (14%), Positives = 100/341 (29%), Gaps = 36/341 (10%) Query: 15 RTRHGKII----YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 + ++G Y G +R ++ + + Sbjct: 6 KEKNGTWRVVFVYQDWTGDRKRTTKRGFLTKREAKDWLD--------DFCLVKADDLNMS 57 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT 129 L+ Y + L +N+ ++ +I+ D I+ IR Sbjct: 58 FSSLVDAYFEDMAHR-LKLNTIMTKRQIVTTKILPYFKDKAVCDISAVDIRKWQAVMISK 116 Query: 130 PSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDMQQFKSF 185 +S T + +F +AVR + +NPC K WT E+ + F Sbjct: 117 GNSETYLRTINNQLSTIFNYAVRFYDLKVNPCTKAGSIGSKNAVSKDFWTVEEFKTFADG 176 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAG----------------VQHLQNNIFSIKTQKT 229 + + F L ++G+R + Q ++ K + Sbjct: 177 LYDNWDAYIGFNLLFWTGMRIGELLALNVKDFDLKAKTVSISKSYQRIKGKDVITKPKTL 236 Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHG 288 + V LP+ ++ L F+ + + GV K H Sbjct: 237 NSTRVVSLPNFLIEDLEDYFSHIYEVNDRYRLFPYTKHYFNYEMQQVCKRTGVKKIRLHD 296 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADR 328 +R A++ + G A + G K ++ TY+ R Sbjct: 297 LRHSHASLLVNMGLGAKVIADRLGHKRIETTLNTYSHLYKR 337 >gi|329923290|ref|ZP_08278774.1| phage integrase, N-terminal SAM domain protein [Paenibacillus sp. HGF5] gi|328941382|gb|EGG37674.1| phage integrase, N-terminal SAM domain protein [Paenibacillus sp. HGF5] Length = 311 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 38/290 (13%), Positives = 93/290 (32%), Gaps = 25/290 (8%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA---I 134 + A +++ ++ + ++T + + + + + A Sbjct: 17 FLSYMKDREYAKDTQQAYLHDIKHFLNSLEGKPITEVTDIDVMYYLTQVRESGAGARYRN 76 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---Q 191 + +++R+ +K +R + +INP + +E+ K + + ++ + EG + Sbjct: 77 RCQSAIRLFYKVMIRFKLASINPAMDIEKAKVEKNRQPTYLQKPILDACLNGIEGRYKIR 136 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251 + Y+GLR S+ + + SI G + L + Sbjct: 137 DVTIIALMAYAGLRVSEIVKLNLSDFDMENSSIAVLGKGNKWRYIPLPAELNKLLHMYLE 196 Query: 252 KETFFINNDKQKMNATQFSIWFKAKATK-----------------AGVNKSAHGVRKFSA 294 + + +QF + + +G + SAH +R A Sbjct: 197 ERMVPRSTKDNAFFVSQFRRRISKRMVQTIAEKTFEAMTEQFPQLSGQSLSAHKLRHSFA 256 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 T GA + G + + + YT D + + +I + Sbjct: 257 TELLRNGADLRAVQELLGHEDISTTQIYTHVLDETK--ERAMNKIRPAIP 304 >gi|312963818|ref|ZP_07778289.1| Tyrosine recombinase [Pseudomonas fluorescens WH6] gi|311281853|gb|EFQ60463.1| Tyrosine recombinase [Pseudomonas fluorescens WH6] Length = 299 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 39/295 (13%), Positives = 90/295 (30%), Gaps = 24/295 (8%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV------ESRK 127 + Y ++ ++ ++ ++++ + I++ + Sbjct: 5 LDAYCAHLRNERQVSPHTLEAYRRDLNKVLAYCEKQQVSSWKSLDIQALRSLIARLHQQG 64 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + S + L+++R L+ + R+ +P + PK + + + Q Sbjct: 65 QSSRSLSRLLSAVRGLYHYLNREGLCDHDPANGLSPPKGERRLPKTLDTDRALQLLDGAV 124 Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFM 242 E + + E SGLR S+ + L K + + Sbjct: 125 EDDFLAHRDQAILELFYSSGLRLSELTGLNLDQLDLADGLVQVLGKGSKTRVLPVGRKAR 184 Query: 243 KLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSA 294 + L + + FI+ +++ + KA + G N H +R A Sbjct: 185 EALQLWLPLRALANPQDDAVFISQQGRRLGPRAIQVRVKAAGERELGQNLHPHMLRHSFA 244 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG---IKNSRRISSVVDSD 346 + ++ + G + + YT D L R + DSD Sbjct: 245 SHLLESSQDLRAVQELLGHSDIKTTQIYTH-LDFQHLATVYDSAHPRAKRIKDSD 298 >gi|295691144|ref|YP_003594837.1| integrase family protein [Caulobacter segnis ATCC 21756] gi|295433047|gb|ADG12219.1| integrase family protein [Caulobacter segnis ATCC 21756] Length = 309 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 40/286 (13%), Positives = 82/286 (28%), Gaps = 31/286 (10%) Query: 69 TTLKWLISEYRKSAHW-GSLAVNSRISF----ESYFDQIIRK---------SGDFDYRKI 114 T + ++ + + + ++ +Y + + G+ + Sbjct: 6 RTGRQALAAWLDHLTLERRASPRTVRAYGDNVLAYLNFLENHRGEALSVAALGEISAADL 65 Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 P S Q L+S+R ++ ++ VA V P+ K RP Sbjct: 66 RGYLAFRRQGENALAPRSISQALSSIRAFHRYVDQRHGVANAAIGLVRGPRLKIGLPRPV 125 Query: 175 TKEDMQQ--------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226 +++ + + E ++ L GLR S++ + T Sbjct: 126 SEDQARDLIFEASGDTEREPWETARDEAVLTLLWGCGLRISEALSLTWSDVPLGAALRIT 185 Query: 227 QKTGTIITVELPDGFMKL-------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279 K G + D + L E F ++ + + Sbjct: 186 GKGGKTRIAPVLDAVREAVAVYADELPFVLGPDEPLFRAKRGGPLSPRHVQALVQTLRGR 245 Query: 280 AGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 G+ + H R AT AGA + G ++ + YT Sbjct: 246 LGLSDRVTPHAFRHAFATHLLGAGADLRTIQELLGHASLSTTQRYT 291 >gi|294677620|ref|YP_003578235.1| phage integrase [Rhodobacter capsulatus SB 1003] gi|294476440|gb|ADE85828.1| phage integrase [Rhodobacter capsulatus SB 1003] Length = 356 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 82/335 (24%), Positives = 140/335 (41%), Gaps = 20/335 (5%) Query: 12 TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + + R +++ Y R R LP H F+ A+ +A T TL Sbjct: 4 VRRQRRGERVVKYHRASGIRLPDLPETH-PDFVAAWAAAEASLTGPAALARKAPVAAGTL 62 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 I + S + L+ + FD + G + + ++HI + ++ + Sbjct: 63 AAAIRAEKTSRPFAELSSLYQSILRKDFDAMEAAYGTAPLKGLRSRHIEADLDKL--SAD 120 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 +A + L + R + A R+ + +P + V R K KTEG WT+++++QF++ W G+ Sbjct: 121 AANKRLKAWRRVMGGARRRGEIESDPSIEVRRIKVKTEGFPAWTQDEVEQFRARWPIGTV 180 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQN---------------NIFSIKTQKTGTIITVE 236 R FE + ++G R +D+ R G ++ + + Sbjct: 181 QRACFELVCWTGARTNDAVRLGPCNIDHGGVLSYRQSKTANPAMVPWSNPLPGYAAAWAA 240 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296 + LA G N + + A AGV KSAHG+RK+ T Sbjct: 241 ERETVKAALACLSGGFTFLEANGRVR--SVKGLGNVISEAARGAGVEKSAHGLRKYRLTA 298 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 A+AG +AH +MA G +T+ +AE YT+ ADR RL Sbjct: 299 IAEAGGSAHAIMAWGGHQTLVEAEHYTRAADRRRL 333 >gi|254785545|ref|YP_003072974.1| site-specific recombinase, phage integrase family [Teredinibacter turnerae T7901] gi|237687332|gb|ACR14596.1| site-specific recombinase, phage integrase family [Teredinibacter turnerae T7901] Length = 325 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 53/344 (15%), Positives = 103/344 (29%), Gaps = 36/344 (10%) Query: 15 RTRHGKIIYYFRK--GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 + G R G R R + ++ AY + + K L Sbjct: 3 KKVDGGYFVDVRPAGRDGPRHRKTFKTQNE-AAAYQRYIIAEHANAKPWKEAPKDNRRLS 61 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTP 130 LI+ + K N R ++ + + + GD IT K+ S +R + Sbjct: 62 QLINAWWKLHGQSLKRGNERKTY---LENLALQMGDPVANTITPKNFASFRSTRLKDVSA 118 Query: 131 SSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--WS 187 ++A L ++ LF R ++ NP + R K + + + + + Sbjct: 119 NTANHDLAYLKALFNELSRLGDWHQPNPFAEIRRLKTDETELTYLERSQIDELLTALDNC 178 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247 GS + L +G R S++ ++NN + K+G + V + L+ Sbjct: 179 RGSHAGIIARVCLATGARWSEAATLKPSQVKNNKVTFSKTKSGKVRAVPIAPELAALILN 238 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA----HGVRKFSATISADAGAT 303 + + + FK K + H +R A+ G Sbjct: 239 SAPLVDGYS---------------AFKRTVGKLDLELPPGQLSHVLRHTFASHFVMNGGN 283 Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347 L G + Y L ++ + + Sbjct: 284 ILTLQKILGHADIKMTMRYAH------LAPEHLNEAVQLNPLRN 321 >gi|330997069|ref|ZP_08320931.1| integron integrase [Paraprevotella xylaniphila YIT 11841] gi|329571567|gb|EGG53249.1| integron integrase [Paraprevotella xylaniphila YIT 11841] Length = 376 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 54/306 (17%), Positives = 98/306 (32%), Gaps = 25/306 (8%) Query: 35 LPYPHESTFIPAY--MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSR 92 L + AY SAL + PK+ SP P Y ++ + ++ Sbjct: 61 LSGFFDRHVETAYINYSALKNTLPKKSGKTSPAIPPG--------YAETLRQLRYSEHTV 112 Query: 93 ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS----SAIQFLTSMRVLFKWAV 148 ++ YF + + + R I + I + + T + S++ F Sbjct: 113 RAYTVYFREFQQYFAGRNLRYIRPEEINAYIVHLIDTRRISSCQQNLRINSIKFYF---- 168 Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208 + C V+R KR+ +KE+++ + F L +GLR S+ Sbjct: 169 EKVLGQERKCYEVKRAKRERTLPDVLSKEEIKSILDATGPDIRLFCMFSLLYSAGLRISE 228 Query: 209 SCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMT---PIGKETFFINNDKQK 263 + + ++ K L ++ L +E F + Sbjct: 229 LLDLKPHDINVSRSLIRVRQGKGRKDRYTLLSKPLVRKLTEYTKLYKPQEWLFERYKGEP 288 Query: 264 MNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321 + S K A +AG+ K H +R AT + G + G + E Sbjct: 289 FTESIVSKKLKEAAKEAGITKRVYPHLLRHSFATHLIEQGTDLKIVKELLGHNQLKTTEM 348 Query: 322 YTKGAD 327 Y AD Sbjct: 349 YVHIAD 354 >gi|91975033|ref|YP_567692.1| site-specific tyrosine recombinase XerC [Rhodopseudomonas palustris BisB5] gi|91681489|gb|ABE37791.1| tyrosine recombinase XerC subunit [Rhodopseudomonas palustris BisB5] Length = 329 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 38/290 (13%), Positives = 82/290 (28%), Gaps = 34/290 (11%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQII----RKSGDF----DYRKITTKHIRSGVES 125 + + L+ + ++ Q + G + ++ +R+ + + Sbjct: 30 FTRWLSHLRAERRLSGKTLEAYARDLRQFLIFLAGHWGGVVTLGRFARLEATDVRAFMAA 89 Query: 126 RK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 R+ S ++ L +R ++ R+ ++ SV PK K +P ++ Sbjct: 90 RRGDAIAGRSLMRALAGLRSFGRFLEREGKGSVGALSSVRAPKIKKSLPKPIQIAAAKRL 149 Query: 183 KSFWSEGSQPR---------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233 + R L SGLR S++ + + G Sbjct: 150 ADADERAGEDRETWILVRDAAVMALLYGSGLRISEALGLRRRDVPAPGKGDTLIVLGKGN 209 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQ----------KMNATQFSIWFKAKATKAGVN 283 + +LA ++ + + G+ Sbjct: 210 KTRMVPVLQNVLAQIADYASACPHPLPPDGPMFVGARGGPLSPRIIQLAMERLRGSLGLP 269 Query: 284 --KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 + H +R AT G + G ++ + YT G D RL Sbjct: 270 DSATPHALRHSFATHLLTRGGDLRAIQELLGHASLSTTQVYT-GIDTERL 318 >gi|288929393|ref|ZP_06423238.1| site-specific recombinase, phage integrase family/ribosomal subunit interface protein [Prevotella sp. oral taxon 317 str. F0108] gi|288329495|gb|EFC68081.1| site-specific recombinase, phage integrase family/ribosomal subunit interface protein [Prevotella sp. oral taxon 317 str. F0108] Length = 293 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 37/274 (13%), Positives = 86/274 (31%), Gaps = 24/274 (8%) Query: 76 SEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESR---K 127 ++ + + + + S+ + D + + IR+ +ES Sbjct: 4 EQFLNYLQYELNRSELTIASYGDDLRAFEAFFKNKDTQLSWEAVDADLIRNWMESMMDKG 63 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + ++ + L+++R +++ + + YV NP V PKR + + +M + Sbjct: 64 CSATTIQRRLSALRSFYRFGLTRGYVEKNPARGVVGPKRSRPLPQFLREGEMDRLLDEVP 123 Query: 188 EGSQPR-----LAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGF 241 G R +G+R ++ + K + D Sbjct: 124 VGESYRDLLAYTIVLTFYSTGMRLAELVGLNDDSIDFGARVIKVLGKGSKQRLIPFADEL 183 Query: 242 MKLLAMTP--------IGKETFFINNDKQKMNATQFSIWFKA--KATKAGVNKSAHGVRK 291 L + FF++ +++ +A + +S H +R Sbjct: 184 EAALKAYIARRDAEVARCDKAFFVDQRGERVKRGAVQNSVRASLAKVTSMKKRSPHVLRH 243 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKG 325 AT + A + G +++ E YT Sbjct: 244 SFATAMLNNDAGLESVKKLLGHESLSTTEIYTHT 277 >gi|90578175|ref|ZP_01233986.1| hypothetical protein VAS14_14029 [Vibrio angustum S14] gi|90441261|gb|EAS66441.1| hypothetical protein VAS14_14029 [Vibrio angustum S14] Length = 296 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 42/271 (15%), Positives = 88/271 (32%), Gaps = 18/271 (6%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHT 129 +L ++ + ++ +I + D +TT ++ H+ Sbjct: 10 DYLYEQHLIHLTLQGKRPATIDAYSRALRRITHQL-DKSPDTLTTDDLKRYFTQLIKTHS 68 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 S+ ++ FK +++++ +N P T ++ + S+ Sbjct: 69 WSTVKINRNGLQFFFKHVLQRDWEWLNIVK----PPHVKTLPDILTPTEVSLLINATSQ- 123 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAM 247 + ++ F L GLR + V ++ ++ I+ K G + LP + L Sbjct: 124 LRYQVFFLTLYSLGLRLGEGLNLTVGNIDSHRMLVHIRQGKGGKDRFIPLPRRTLYALRY 183 Query: 248 TPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISAD 299 + N + M+ KA G+ KS H +R AT + Sbjct: 184 YWQTHKNSHYLFPSQFNVNHTVMDRGGVQKAMKAVIKSCGITKSISPHNLRHSYATHLLE 243 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIR 330 G + G +++ YT D R Sbjct: 244 RGLDLRSVQHLLGHNSLNTTAKYTHLTDISR 274 >gi|318065836|ref|YP_004123868.1| gp46 [Mycobacterium phage Wee] gi|315420919|gb|ADU15920.1| gp46 [Mycobacterium phage Wee] Length = 367 Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats. Identities = 49/361 (13%), Positives = 104/361 (28%), Gaps = 43/361 (11%) Query: 10 FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE---------Y 60 F+ + HG K +G++ L + + A+ ++ Sbjct: 3 FIRPRKRAHGIGYAVLHKVNGQQTSLGTFDDEKEAEEFRDAVNSIGAEKAMLAWGITPTK 62 Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHI 119 + R T+ + Y S + + + SY I G +T+ I Sbjct: 63 QAARRSTAPTVSEWLERYINSR--TGVTKTTLHDYSSYLKHDIAPVLGAIPIDLLTSDDI 120 Query: 120 RSGVESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + V+ + + AV + NP + P+ + + + T+ Sbjct: 121 AAWVQGLAARELAGKTIANRHGFLSAALNAAVAAHEIPHNPAIGTRIPRTERKEMCFLTR 180 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---- 232 ++ + + + + F++ SG R + + ++ + Sbjct: 181 DEFNLLLAQF--APRWQPLVRFMVASGARFGEVSALRPADVDRTHNTVYIGRGWKRTYDG 238 Query: 233 -----------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS-----IWFKAK 276 +V LL E F N + + A F + Sbjct: 239 AGYELGAPKTKRSVRTISVHPALLGDLDYSGEFLFTNTVGKPLRAPGFRSNVWYPAVEKA 298 Query: 277 ATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK--GADRIRL 331 AG+ K H +R A+ GA + + G +++ YT +D R Sbjct: 299 C-AAGLAKKPRIHDMRHTCASWMIAGGANMYAVQRHLGHESIQTTISLYTHLDRSDSERA 357 Query: 332 G 332 Sbjct: 358 A 358 >gi|120436726|ref|YP_862412.1| tyrosine recombinase XerC [Gramella forsetii KT0803] gi|117578876|emb|CAL67345.1| tyrosine recombinase XerC [Gramella forsetii KT0803] Length = 296 Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats. Identities = 34/281 (12%), Positives = 94/281 (33%), Gaps = 30/281 (10%) Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSGVE 124 + + Y + A ++ ++++ + +++ IRS + Sbjct: 1 MSFSAFLD-YLQLE--KKYAFHTITAYKADLNAFQDFIQNTFEQDTILEVSYSQIRSWIV 57 Query: 125 SRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + + + ++S++ +++ ++ + + +P + K + P+++E++ Sbjct: 58 ELSESGISNRTINRKISSLKAYYRFLLKTKQIEFSPLAKHKALKTPKKIQIPFSEEEIVS 117 Query: 182 FKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-----IKTQKTGTI 232 EG + RL E +G+R + + L ++++ Sbjct: 118 VLENIDDSTYEGIRGRLIVELFYSTGIRRIELINIQLSDLDLERGVLKVLGKRSKERYIP 177 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINN---------DKQKMNATQFSIWFKAKATKAGVN 283 + + D +K L + + +F + K + Sbjct: 178 LISSVIDTAVKYLERRREEGVNHDSEFLFLTSKGDKIYESFVYRVINNYFSEVSGK--LK 235 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 KS H +R AT + GA + + G ++ + YT Sbjct: 236 KSPHILRHSFATHLLNQGANLNAVKELLGHSSLAATQVYTH 276 >gi|304440179|ref|ZP_07400069.1| tyrosine recombinase XerC [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371228|gb|EFM24844.1| tyrosine recombinase XerC [Peptoniphilus duerdenii ATCC BAA-1640] Length = 321 Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats. Identities = 42/308 (13%), Positives = 98/308 (31%), Gaps = 47/308 (15%) Query: 74 LISEYRKS-AHWGSLAVNSRISFESYFDQII-----------------RKSGDFDYRKIT 115 L+ ++ L++N+ + + R I Sbjct: 7 LLDDFLGYLVSTRGLSMNTVNGYYYDLKNFLVYIVARKLNFDTKELDDRYLEKMSLDLIK 66 Query: 116 T---KHIRSGVESRKHTP----SSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRK 167 T + I + HT ++ + +++R F + + + ++P ++ PK + Sbjct: 67 TVNKQDIYAYNSYLVHTKKNKMNAVSRKNSAIRTFFNYLTSKINVLEVDPSSDLDMPKVR 126 Query: 168 TEGIRPWT-----------KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216 + ++ K+ S+ F L G+R S+ C + Sbjct: 127 RTIPTALSLDEAKRFLKTIEDFNYNGKNNDFLKSRDFCIATFFLNCGMRLSELCGINMFD 186 Query: 217 LQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN-----NDKQKMNATQFSI 271 L+++ K ++ L + L + +K ++ + Sbjct: 187 LEDDNTIKILGKGNKERSIYLNKACIHALDNYLEFRPEVESKALFLSRNKARITPRAVQM 246 Query: 272 WFKAKATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD 327 +G++ S H +R +AT+ G L G ++V E YT +D Sbjct: 247 MIDKYIVMSGLDPDKYSVHKLRHTAATLMYQYGDVDIRSLQKVLGHESVQTTEIYTHVSD 306 Query: 328 -RIRLGIK 334 +++ I+ Sbjct: 307 EQVKRAIE 314 >gi|299538027|ref|ZP_07051313.1| hypothetical protein BFZC1_18515 [Lysinibacillus fusiformis ZC1] gi|298726609|gb|EFI67198.1| hypothetical protein BFZC1_18515 [Lysinibacillus fusiformis ZC1] Length = 278 Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats. Identities = 39/270 (14%), Positives = 95/270 (35%), Gaps = 12/270 (4%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV---ESRK 127 L+ + +++ + + + ++ ++I +++ITT+ IR + E + Sbjct: 3 LEKCLQLFQQEYE-RRIEKKTSVLYQRTVSEMITYC-SIPFQEITTRDIRKWLCHLEEKG 60 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 P++ + L +R+ +K+ + ++ +A NP ++ P+ + + Sbjct: 61 RAPATISKKLFGLRLFYKYCLEEQLIAHNPVKAIRLPEINDRMPHYLLPNQLLLLQRMTE 120 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLL 245 + R E L +G+R S+ ++ + + I+ K V + L Sbjct: 121 TNKRERAIVEVLYTTGVRLSELVAIQLKDIDWSERLIHIRKGKGKKARIVLFTRMCAEYL 180 Query: 246 AMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADA 300 F + + F + + G+ S H +R A A Sbjct: 181 QAYLQERDSSCPYLFLNMRGTKPLGVRGIQHKFSDYSEELGIPFSPHTLRHTFAAHLAMK 240 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIR 330 G + + G + Q + Y + + R Sbjct: 241 GMSLDCIQTLLGHEDPHQTQIYARLYNHAR 270 >gi|30260592|ref|NP_842969.1| prophage LambdaBa04, site-specific recombinase phage integrase family protein protein [Bacillus anthracis str. Ames] gi|47525704|ref|YP_017053.1| prophage lambdaba04, site-specific recombinase phage integrase family protein protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49183443|ref|YP_026695.1| prophage LambdaBa04, site-specific recombinase phage integrase family protein protein [Bacillus anthracis str. Sterne] gi|65317857|ref|ZP_00390816.1| COG0582: Integrase [Bacillus anthracis str. A2012] gi|165870761|ref|ZP_02215414.1| prophage LambdaBa04, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0488] gi|167634745|ref|ZP_02393064.1| prophage LambdaBa04, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0442] gi|167641265|ref|ZP_02399518.1| prophage LambdaBa04, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0193] gi|170688998|ref|ZP_02880199.1| prophage LambdaBa04, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0465] gi|170707193|ref|ZP_02897649.1| prophage LambdaBa04, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0389] gi|177654553|ref|ZP_02936409.1| prophage LambdaBa04, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0174] gi|190567522|ref|ZP_03020435.1| prophage LambdaBa04, site-specific recombinase, phage integrase family [Bacillus anthracis Tsiankovskii-I] gi|227813101|ref|YP_002813110.1| prophage LambdaBa04, site-specific recombinase, phage integrase family [Bacillus anthracis str. CDC 684] gi|229604358|ref|YP_002865039.1| prophage LambdaBa04, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0248] gi|254686817|ref|ZP_05150675.1| prophage LambdaBa04, site-specific recombinase, phage integrase family protein [Bacillus anthracis str. CNEVA-9066] gi|254724891|ref|ZP_05186674.1| prophage LambdaBa04, site-specific recombinase, phage integrase family protein [Bacillus anthracis str. A1055] gi|254738957|ref|ZP_05196659.1| prophage LambdaBa04, site-specific recombinase, phage integrase family protein [Bacillus anthracis str. Western North America USA6153] gi|254744545|ref|ZP_05202224.1| prophage LambdaBa04, site-specific recombinase, phage integrase family protein [Bacillus anthracis str. Kruger B] gi|254756197|ref|ZP_05208226.1| prophage LambdaBa04, site-specific recombinase, phage integrase family protein [Bacillus anthracis str. Vollum] gi|254762016|ref|ZP_05213865.1| prophage LambdaBa04, site-specific recombinase, phage integrase family protein [Bacillus anthracis str. Australia 94] gi|30253960|gb|AAP24455.1| prophage LambdaBa04, site-specific recombinase, phage integrase family [Bacillus anthracis str. Ames] gi|47500852|gb|AAT29528.1| prophage LambdaBa04, site-specific recombinase, phage integrase family [Bacillus anthracis str. 'Ames Ancestor'] gi|49177370|gb|AAT52746.1| prophage LambdaBa04, site-specific recombinase, phage integrase family [Bacillus anthracis str. Sterne] gi|164713595|gb|EDR19119.1| prophage LambdaBa04, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0488] gi|167510773|gb|EDR86166.1| prophage LambdaBa04, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0193] gi|167529819|gb|EDR92567.1| prophage LambdaBa04, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0442] gi|170127971|gb|EDS96842.1| prophage LambdaBa04, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0389] gi|170667099|gb|EDT17861.1| prophage LambdaBa04, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0465] gi|172080665|gb|EDT65748.1| prophage LambdaBa04, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0174] gi|190561309|gb|EDV15281.1| prophage LambdaBa04, site-specific recombinase, phage integrase family [Bacillus anthracis Tsiankovskii-I] gi|227003859|gb|ACP13602.1| prophage LambdaBa04, site-specific recombinase, phage integrase family [Bacillus anthracis str. CDC 684] gi|229268766|gb|ACQ50403.1| prophage LambdaBa04, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0248] Length = 374 Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats. Identities = 57/372 (15%), Positives = 114/372 (30%), Gaps = 44/372 (11%) Query: 15 RTRHGKIIYYFRKGH----GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 R R K + G G+R + T A A + + K T Sbjct: 6 RKRGEKWSFTIDIGKDPITGKRKQKTASGFKTKKEA-ERACNELIHQFNTGSLVDDKNFT 64 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR--- 126 L + E+ ++ + + +++ + +II G + + H + V+S Sbjct: 65 LSEYLQEWLENTAKQRVRETTFTNYKRAINSRIIPVLGSHKLKDLKPLHGQRFVKSLIDE 124 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 +P+ ++ + AVR E + NP VE P+ + W+ E+ ++F + Sbjct: 125 GLSPAYIEYIFIVLKGSLEDAVRWELLFKNPFQHVEIPRPRKVVNSTWSIEETKKFLNRT 184 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-----------------QNNIFSIKTQK 228 E F L +G+R + ++ F+ Sbjct: 185 KFENVIYYHLFLLALNTGMRRGEILGLKWKNFDLNEGKISVTETLIYDENGFRFTEPKTH 244 Query: 229 TGTIITVELPDGFMK-------------LLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275 + + + L + + F Q + + F Sbjct: 245 GSKRLISIDQNLCKEFKSYKAKQNEFKLLFGQSYEDNDLVFAKETGQPILPRTMTTTFNQ 304 Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGI 333 KA V + H +R ATI G + G ++ +TY+ I + Sbjct: 305 FIKKADVPQIRFHDLRHTHATILLKLGINPKIVSERLGHSSIKTTLDTYSHVT--IDMQE 362 Query: 334 KNSRRISSVVDS 345 ++S + S Sbjct: 363 SAVLKLSEALKS 374 >gi|189184773|ref|YP_001938558.1| site-specific tyrosine recombinase XerC [Orientia tsutsugamushi str. Ikeda] gi|189181544|dbj|BAG41324.1| integrase/recombinase XerC [Orientia tsutsugamushi str. Ikeda] Length = 312 Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats. Identities = 40/282 (14%), Positives = 92/282 (32%), Gaps = 28/282 (9%) Query: 71 LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDF-DYRKITTKHIRSGVESRKH 128 L+ +I+E+ + + ++N+ S+ + Q + D+ + ++ H+ S Sbjct: 7 LEKIITEWLNYLKNYKNYSINTCSSYNNDLQQFLNFIVDYCNLSELKISHLCSVDIRLMR 66 Query: 129 TPSSAIQFLTS-----------MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 + S L +R +K+ + + +V PK + + Sbjct: 67 SWLSQRYNLQYNSSSNSRALSSVRNFYKYLFKHHNLVNKIICAVRSPKLAKRLPKALDIQ 126 Query: 178 DMQQF-------KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV------QHLQNNIFSI 224 D + G++ + L GLR S++ + + Sbjct: 127 DTVACTTEINNIANDKWIGARDKALLLLLYGQGLRISEALSVTKASLKSESLIIKGKGNK 186 Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN- 283 IT +L ++ L+ + F+ +K+ F + + Sbjct: 187 IRLIPWLDITKQLLSDYVNLVPYSLTDNSPLFVGKRGKKLQPAVFGRHLIKLRRQLNLPE 246 Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +AH R A+ + GA + G +++ + YTK Sbjct: 247 SLTAHTFRHCFASHLLNNGADLRSIQELLGHQSLSSTQIYTK 288 >gi|78356957|ref|YP_388406.1| integrase/recombinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219362|gb|ABB38711.1| integrase/recombinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 304 Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats. Identities = 39/292 (13%), Positives = 91/292 (31%), Gaps = 30/292 (10%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD------------YRKITTKHIRSGV 123 + + + ++ + R +G+ ++ + + Sbjct: 15 EAFCARLSAEGRSPATIAAYRRDLALVARVAGELAPGIVCREVTVGLLDEVFSAGAVTES 74 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 E + +S + ++R F WA V NP S+ + + T + ++ Sbjct: 75 ERGPRSAASLHRMKAAVRAFFAWAAETGVVGDNPARSIRMHRLPRKLPVFLTTAEKKRLL 134 Query: 184 -----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 + R E LL +G+R + + + + ++ + G + V+ Sbjct: 135 KELKGRTDFSTLRDRAMIEVLLGTGIRLGELTALDMDDIDLDAKHLRVRAKGNVPQVKFI 194 Query: 239 DGFMKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWFKAKATKAGVNK--SAH 287 ++ L + + + + ++ Q + KAG+ K + H Sbjct: 195 KTDLRTLLRRYLAERRRHGRPEMEALFLSNRDGRLCQRQIANRLAHWLRKAGIEKELTPH 254 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 G+R AT A + G + V + YT D + R+ Sbjct: 255 GLRHTFATHLYGATNDLLVVQRALGHRDVSTTQIYTHLVDGQ--LEEALERL 304 >gi|325570911|ref|ZP_08146560.1| site-specific tyrosine recombinase XerC [Enterococcus casseliflavus ATCC 12755] gi|325156315|gb|EGC68498.1| site-specific tyrosine recombinase XerC [Enterococcus casseliflavus ATCC 12755] Length = 312 Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats. Identities = 41/276 (14%), Positives = 96/276 (34%), Gaps = 26/276 (9%) Query: 76 SEYRKSAHW-GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIR---SGVESRKH 128 E+ + + ++ +++ +++SG+ D + + +R S + R++ Sbjct: 21 EEFFRYLIVERGYSEKTKKAYQEDMGDFFHFLKESGNEDPLAVEYRDVRVYLSYLTEREY 80 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--- 185 + +S + + S+R +++ + E V NP + K+ + R + +++M Sbjct: 81 SRNSISRKMASLRSFYQFLTKHEIVKENPFAYIHLKKKNAKLPRFFYEKEMDALFQSVAG 140 Query: 186 -WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-------------NIFSIKTQKTGT 231 + + E L SGLR S+ + + + + Sbjct: 141 DEPLQQRNQALLEVLYGSGLRVSECSSLTLGAIDWESGVLLIHGKGNKDRYVPFGSYAQA 200 Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGV 289 + L G +L+ E F+N+ + AT K+ ++ H + Sbjct: 201 AVKRYLSSGRKQLMEKQNKEHEILFVNHLGDGITATGIEYVLNQIIRKSSLDSKIHPHML 260 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 R AT + GA + G + + Y Sbjct: 261 RHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHV 296 >gi|323703102|ref|ZP_08114757.1| integrase family protein [Desulfotomaculum nigrificans DSM 574] gi|323531996|gb|EGB21880.1| integrase family protein [Desulfotomaculum nigrificans DSM 574] Length = 317 Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats. Identities = 46/301 (15%), Positives = 92/301 (30%), Gaps = 40/301 (13%) Query: 84 WGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTS 139 + A+++ ++ I G + I T ++ P++ + Sbjct: 15 YKIYAISTWKNYYRSIKNHIFPALGHILLKDIKTDDVQRLYNKMAKAGLAPATIRRNHQI 74 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199 + AV+ + ++ NP +V+ PK +R T E+M +F E AF L Sbjct: 75 IHSCLNQAVKNKLLSWNPADAVKLPKLNDTPVRTMTPEEMAKFI-SVLENDLWGAAFLTL 133 Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-----------------ITVELPDGFM 242 L +G+ + Q + + + T+ +P+ Sbjct: 134 LGTGISLGELLALRWQDIDLKSKVLTINQALARTKSRGLIFVEPKTDKSKRTIPMPEPVA 193 Query: 243 KLLAMTPIGKETF--------------FINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286 + L + F ++ F+ F KA V K + Sbjct: 194 EALQKHRVQMAQIKLAAGPKYTDQDLVFCTTYGTPIHPRNFTRKFYTLREKAKVPKDINL 253 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGA-DRIRLGIKNSRRISSVVD 344 H +R AT + G + G + TY+ + D R ++ + Sbjct: 254 HALRHTFATRLLEEGENLKVVQDLLGHADISTTANTYSHVSPDVKRKAAAKMDKLLTKKA 313 Query: 345 S 345 S Sbjct: 314 S 314 >gi|84686929|ref|ZP_01014813.1| tyrosine recombinase XerD [Maritimibacter alkaliphilus HTCC2654] gi|84665126|gb|EAQ11606.1| tyrosine recombinase XerD [Rhodobacterales bacterium HTCC2654] Length = 315 Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats. Identities = 46/291 (15%), Positives = 93/291 (31%), Gaps = 37/291 (12%) Query: 74 LISEYRKSAHWG-SLAVNSRISFESYFDQII-------RKSGDFDYRKITTKHIRSGVES 125 IS + ++ + N+ +++ G D + I E+ Sbjct: 9 WISAFLEAQAAELDASQNTLLAYGRDLKDFSGYLDRMGEDFGGADRATVEAYLI--DCEA 66 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + S+ + L++++ ++++A + + NP L + P + + +++D+++ + Sbjct: 67 QGLAVSTRARRLSAIKQIYRFAFEEGWRTDNPTLRITGPGKARRLPKTLSEDDVERLLNA 126 Query: 186 WSEG-------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVEL 237 + + E L +G+R S+ V + + + K G V L Sbjct: 127 ARQHGRTDADRLRNACMMEVLYATGMRVSELVTLPVSAARGDPRMLLVMGKGGKERMVPL 186 Query: 238 PDGFMKLLAMT----------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 LA + F + +F K A AG Sbjct: 187 SPPARAALAAWLDVRDAAEDAARSKGAKPSRFLFPSTGKDGHLTRHRFHGLIKDIAVAAG 246 Query: 282 V---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 V + H +R AT GA + G V E YT D Sbjct: 247 VSPETVTPHRLRHAFATHLLAHGADLRAIQTLLGHADVSTTEIYTHVLDER 297 >gi|225174941|ref|ZP_03728938.1| integrase family protein [Dethiobacter alkaliphilus AHT 1] gi|225169581|gb|EEG78378.1| integrase family protein [Dethiobacter alkaliphilus AHT 1] Length = 286 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 43/281 (15%), Positives = 99/281 (35%), Gaps = 20/281 (7%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRKHT 129 I ++++ + + + + + +G I + I + S K Sbjct: 7 IEQFQQYMNDIERSPVTIALYLRDLRYFGSYMEKKHNGPVYLEDIKSADIEGFLRSLKER 66 Query: 130 ---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 P+S ++L ++R +K+A ++E V + L+V+ K T+ +++++ + + Sbjct: 67 NIAPNSRSRYLYTLRSFYKFAYKKELVERDISLAVDLVKLPTKERHYLSQQEVAE-LADT 125 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKL 244 RL FL +GLR S+ + + + I + + K V + + + L Sbjct: 126 ITNDLVRLIVIFLANTGLRISECIKLTMDDVDLDKGIIHVISGKGNKDRNVPINNKLLPL 185 Query: 245 LAMTPIGKETFFINNDKQK------MNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296 L + +N ++ T + + G K S H +R AT Sbjct: 186 LIDYKDNWRDAYNSNFFFATKKTGTISNTYVNNTLRQAVQSLGWKKNVSCHILRHSFATS 245 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKNS 336 E+ G + Y ++++ + Sbjct: 246 LVKQKVGLVEIQKLLGHSDLKITSVYMHADLEQLQDAVNAL 286 >gi|188575133|ref|YP_001912062.1| site-specific tyrosine recombinase XerC [Xanthomonas oryzae pv. oryzae PXO99A] gi|188519585|gb|ACD57530.1| tyrosine recombinase XerC [Xanthomonas oryzae pv. oryzae PXO99A] Length = 305 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 42/286 (14%), Positives = 94/286 (32%), Gaps = 29/286 (10%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF-------------DYRKITTKHIR 120 + E+ ++ ++ ++ ++ +G+ D ++ + H+R Sbjct: 4 VDEFLTYLQVERQVSAHTLDAYRRDLAALVAWTGERNAEDGAQQTATPVDSAQLDSAHLR 63 Query: 121 SGVE---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 V R +P S + L++ R + W ++ +A +P ++ PK + + + + Sbjct: 64 QFVAAEHRRGLSPKSLQRRLSACRSYYAWLLKHGRIAASPAAALRAPKAQRKLPQVLDAD 123 Query: 178 DMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTII 233 + + G + R E SGLR S+ C + L + + K Sbjct: 124 EAVRLVEVPTDAPLGLRDRALLELFYSSGLRLSELCALRWRDLDLDSGLVMVLGKGSKQR 183 Query: 234 TVELPDGFMKLLAMTPIG-----KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 V + + L F ++ I K A + G+ + Sbjct: 184 LVPVGSHAIAALRQWRRDSGASADAHVFPGRTGGAISQRAVQIRIKQLAVRQGMFKDVHP 243 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R A+ ++ + G + + YT D L Sbjct: 244 HMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTH-LDFQHLA 288 >gi|62184944|ref|YP_219729.1| site-specific tyrosine recombinase XerC [Chlamydophila abortus S26/3] gi|81312884|sp|Q5L6G3|XERC_CHLAB RecName: Full=Tyrosine recombinase xerC gi|62148011|emb|CAH63762.1| putative integrase/recombinase [Chlamydophila abortus S26/3] Length = 312 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 37/294 (12%), Positives = 96/294 (32%), Gaps = 42/294 (14%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKS---------------------GDFDYRKIT 115 +Y K+ + ++ ++ + + + +T Sbjct: 10 DYLKNIKTA--SPHTLRNYCIDLNSFKTFLEKHGELTPSPPICLLTKERQEAELPFSLLT 67 Query: 116 TKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 +R + + + L++++ ++ V+Q + +P +++ P+ E Sbjct: 68 KDTVRLYILKLMQENKAKRTIKRRLSAIKSFSQYCVKQRILPDDPTETIQGPRLPKELPS 127 Query: 173 PWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228 P T E ++ + G + R E SGLR S+ + I+ + Sbjct: 128 PITYEQVEILMATPDLSKYTGLRDRCLLELFYSSGLRISEIVAINHWDIDFTSHLIRIRG 187 Query: 229 T-GTIITVELPDGFMKLLAMTPIGK---------ETFFINNDKQKMNATQFSIWFKAKAT 278 V + + L + F+N +++ F+ Sbjct: 188 KGKKERLVPITPHAAQWLQHYLTHPARTSIEKDAQAIFLNRFGKRLTTRSIDRKFQKYLR 247 Query: 279 KAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 ++G+ + + H +R AT + G + A G +++ YT + +++ Sbjct: 248 QSGLSGHITPHTIRHTIATHWLENGMDLKTIQALLGHSSLETTTIYTHVSMKLK 301 >gi|85708192|ref|ZP_01039258.1| site-specific recombinase, phage integrase family protein [Erythrobacter sp. NAP1] gi|85689726|gb|EAQ29729.1| site-specific recombinase, phage integrase family protein [Erythrobacter sp. NAP1] Length = 366 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 48/354 (13%), Positives = 106/354 (29%), Gaps = 20/354 (5%) Query: 9 PFVTKERTRHGKIIYYF---RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65 P G ++ ++G RR+ L ++T A A R Sbjct: 10 PGFGLRVHPSGCRTWFVMFRQRGKQRRVSLGTTRQNTATEARRIAREKLAEVALDGLPSR 69 Query: 66 KKPTT-------LKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTK 117 K + ++ + ++R + D+ I+ GD +IT Sbjct: 70 KTTKSRAKEAPLMREYAERFWADY-AHHWKPSTRQRNRTGIDRDILPTFGDRRVDEITKA 128 Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 I + + + + + V+ +A + Y + P+ K + + + Sbjct: 129 DISFWRDGFAERTGAFNRTIPILSVMMGYAEQIGYRSRGSNPCRGTPRYKRKRMERFLSA 188 Query: 178 DMQQFK-----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 F +E S A L+Y+G RC + + +Q + KTG Sbjct: 189 REYGQLATALDYFEAEHSAVVAAIRLLIYTGARCGEIENLSWEWVQEPRIMLPDSKTGAK 248 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRK 291 I + ++ + + + + + +A + H +R Sbjct: 249 IVYLNRQAAEVITSIPDRKPTGLVFPSVRDPERPMKLGMHWPEIRNRAALPDVRLHDLRH 308 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345 A+ + + + G + Y +D + + R+S + S Sbjct: 309 SFASTAIRDNISLMVIGKLLGHALAETTSRYAHLSDE--VIADAAERVSGSIAS 360 >gi|262202720|ref|YP_003273928.1| tyrosine recombinase XerD [Gordonia bronchialis DSM 43247] gi|262086067|gb|ACY22035.1| tyrosine recombinase XerD [Gordonia bronchialis DSM 43247] Length = 313 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 46/280 (16%), Positives = 90/280 (32%), Gaps = 31/280 (11%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTP 130 ++ Y A N+ S+ ++ G ++T IR + + + Sbjct: 15 VARYLDHLTVERGAAHNTVTSYRRDLERYQNYLIARGISGLAEVTESDIREFLVALRRGD 74 Query: 131 ----------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 SS + L + R +AV + V+ + +V P+ + +++ Sbjct: 75 EATGSRPLADSSIARTLVATRRFHGFAVDEGVVSTDVAHAVRPPRPARRLPKSLPVDEVL 134 Query: 181 QFKSF-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIIT 234 + R E L G R S++ V L +++ K G Sbjct: 135 AILEASSTGDHPRALRDRALLELLYSCGARISEATSLDVDDLDTAARAVRLRGKGGKERI 194 Query: 235 VELPDGFMKLLAMTPIGKETF---------FINNDKQKMNATQFSIWFKAKATKAGVNK- 284 V + + + F+N +++ + A +AG++K Sbjct: 195 VPVGGPAADAIDAYLVRGRPVLATRSAPALFLNARGGRLSRQSAWQVLVSAAERAGLDKA 254 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 S H +R AT D GA + G +V + YT Sbjct: 255 VSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQVYT 294 >gi|221632578|ref|YP_002521799.1| putative integrase [Thermomicrobium roseum DSM 5159] gi|221156118|gb|ACM05245.1| putative integrase [Thermomicrobium roseum DSM 5159] Length = 359 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 48/346 (13%), Positives = 99/346 (28%), Gaps = 41/346 (11%) Query: 28 GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87 GRR + E+ L K +P T++ L + + Sbjct: 18 RDGRRFSVYGRTETEVRQK----LAELERKLAIDQAPPVGRVTVRELCERWLATER-KRW 72 Query: 88 AVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKW 146 + + + + + G K+T ++ +S + SA + F Sbjct: 73 KPKTYYDYRWHLEHHVYPVLGRVQLSKLTPDRLQRFFDSL--SGRSANLTFRLLHRCFVV 130 Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF-LLYSGLR 205 +R ++ NPC V P + I + + + + E P L GLR Sbjct: 131 GIRWGFLGQNPCDRVVPPAYQAPPIELPDADALARLFRYCLESDDPYAGLVGLSLLCGLR 190 Query: 206 CSDSCRAGVQ----------------HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT- 248 + + + + T+ + + ++LL Sbjct: 191 RGEITALRWSDIDLQTGQLSVVRSGQWIAGRWVETEPKTRAGRRTIYVGEQGIRLLRRQK 250 Query: 249 -------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSA 294 F + Q ++ ++ + + +GV H +R SA Sbjct: 251 ALVAQLKLQAGPAWQEHGLVFPGPNGQPLSPSRVAAAVQRICKASGVPPLRHHSLRHASA 310 Query: 295 TISADAGATAHELMATYGWKTVDQAET-YTKGADRIRLGIKNSRRI 339 +++ AG E+ G V Y+ R + R+ Sbjct: 311 SLALLAGVPLPEVSRQLGHANVSITARVYSHCISDGRRVTEAIERV 356 >gi|329925024|ref|ZP_08279968.1| phage integrase, N-terminal SAM domain protein [Paenibacillus sp. HGF5] gi|328940143|gb|EGG36475.1| phage integrase, N-terminal SAM domain protein [Paenibacillus sp. HGF5] Length = 346 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 47/317 (14%), Positives = 102/317 (32%), Gaps = 41/317 (12%) Query: 52 TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK----SG 107 + R+ I + TL+ + K +L + + + I G Sbjct: 7 RKTVGTRQPIVNVALPSYTLQEAVDFVVKIKRANNLKERTISGYIQNMNYFIEWVTERYG 66 Query: 108 DFDYRKITTKHIRSG---------------------VESRKHTPSSAIQFLTSMRVLFKW 146 + R++T +R +P+S + ++ F Sbjct: 67 EITIREVTADLLREYVLWCATDKEYYAGHPFKAEYEKGKLGLSPASVNVRIRVLKTFFAV 126 Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWSEGSQPRLAFEFLLYS 202 +E + NP +V ++ + + P + E++++F + + +L + Sbjct: 127 LFEEEVIDRNPAANVSLMRQDVDTVMPLSDEELRRFMKAPDQRQWAQWRDYVIMTLILDT 186 Query: 203 GLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPDGFMKLLAM------TPIGK 252 GLR + C + SI K T+ L +LL Sbjct: 187 GLRLGEICALEKPEIDFVKKSITLPASKNKNRKSRTLPLSTETARLLKQLIAETERNFDT 246 Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMAT 310 F N ++++ F A +A + ++ H +R AT++A+ G + L Sbjct: 247 TYVFTTNYGEQLSEKTIQKSFDNYAERAKLGRTVSPHVLRHNFATMAAENGMSIFHLQKL 306 Query: 311 YGWKTVDQAETYTKGAD 327 G + Y + ++ Sbjct: 307 MGHADIATTRKYVQISE 323 >gi|297242750|ref|ZP_06926688.1| site-specific recombinase XerD [Gardnerella vaginalis AMD] gi|296888961|gb|EFH27695.1| site-specific recombinase XerD [Gardnerella vaginalis AMD] Length = 319 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 40/282 (14%), Positives = 85/282 (30%), Gaps = 30/282 (10%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGV---ESR 126 I + L+ + ++ S + + D I+ I S + Sbjct: 22 IQRFIAHIDIERGLSKKTVSAYASDLQDYTCWLYDERKIKDITTISQLDIESYIRTLNEL 81 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 + + L S+ ++ + + + V+ PK+ + E++ + Sbjct: 82 GLGTRTVARRLASIHEWHRFMLAHGDIQADVSAQVKAPKQADYLPDVLSIEEVNRVIEAA 141 Query: 186 ------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELP 238 + + EFL +G R S++ + + N +K T K V + Sbjct: 142 GNFGSSDAISIRDTALLEFLYATGARISEAVGVKFEDIDLNESVVKLTGKGSKQRLVPIG 201 Query: 239 DGFMKLLAMTPIGK------------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284 ++ L T F+N ++ +A ++K Sbjct: 202 GCAVRALRNYMEKSRPELASKGKRELHTIFLNKRGNALSRQSAWAIVTQAGERAKLDKPL 261 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 H +R AT GA + G +V + YT + Sbjct: 262 HPHTLRHSLATHLIAGGADVRTVQELLGHASVTTTQIYTHIS 303 >gi|228988955|ref|ZP_04148994.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229159077|ref|ZP_04287131.1| DNA integration/recombination/invertion protein [Bacillus cereus ATCC 4342] gi|228624403|gb|EEK81176.1| DNA integration/recombination/invertion protein [Bacillus cereus ATCC 4342] gi|228770774|gb|EEM19300.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 369 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 49/366 (13%), Positives = 114/366 (31%), Gaps = 44/366 (12%) Query: 17 RHGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + G G+R + + T A + + TL Sbjct: 7 KRGNKYCIVIDIGPDPETGKRRQKWFSGYKTKKEAEKD-VAKKITELNEGTFIEPSKVTL 65 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 + ++ + + S+ ++ + + ++ + +I G K+ HI+ ++ Sbjct: 66 EDYLNHWLE-IKSMSIERSTFVGYRAFINQHVIPSIGMVTLHKLNVMHIQKCYKTAIDRG 124 Query: 131 SSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + L ++ AV+Q ++ NP E PK++ I+ WT+E++++F Sbjct: 125 IANNSVLLMHRILKSALNLAVKQNIISRNPADFAEIPKKERTSIQTWTEEEVKKFLLHSQ 184 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--------------TGTII 233 E S+ + + + +G+R + Q + ++ + + Sbjct: 185 E-SRYHIGYLLAITTGMRMGEVLGLRWQDVDFEKHTVTINQTSGHDNQIKKTAKTNSSKR 243 Query: 234 TVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKAKATK 279 T+ +P ++ L + N + F F Sbjct: 244 TIPVPKETIESLKKHKVLINQEKLRLGSAYQDFDLINCNEFGMIIKKANFRKNFIRAIHN 303 Query: 280 AGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSR 337 AGV H +R AT+ G + G + Y+ + + + Sbjct: 304 AGVKEIKFHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLSVYSHVLPN--MQEEAVK 361 Query: 338 RISSVV 343 S + Sbjct: 362 NFSKSI 367 >gi|73663256|ref|YP_302037.1| integrase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72495771|dbj|BAE19092.1| integrase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 349 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 38/349 (10%), Positives = 92/349 (26%), Gaps = 26/349 (7%) Query: 14 ERTRHGK-IIY---YFRK-GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 + GK Y Y G+ ++++ + + Sbjct: 3 YIEKRGKTWRYSISYVDDEGNRKKVQKGGYRTKQEAKR----IAEDLEYKMRNGYAVSND 58 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--R 126 T ++ + ++ +++ +ES + I + I + + Sbjct: 59 ITFADYFYQWYEVNKLPHVSESTKRHYESAYKHIKDHFRHKLLKDIKRTEYQKFLNEYGL 118 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF---- 182 H+ + + + +R F A+ + YV NP E + +F Sbjct: 119 THSYETIRKLNSYIRNAFDDAIHEGYVIKNPTYKAELHASVPAKTEEMKFINESEFKKLK 178 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH-------LQNNIFSIKTQKTGTIITV 235 F + + L L +G R S+ + + + +T I Sbjct: 179 HYFEQKNTTSSLVLLVALTTGGRFSEIAKLKREDLDIKNNKIHLRGTKTETSDRIISIDT 238 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSA 294 + P + D + + + + + + H +R Sbjct: 239 VTMKRIQSFIDSRPTNISGYIFTVDGKTITNAAVNKVLRKACANLNIKEITIHSLRHSFC 298 Query: 295 TISADAGATAHELMATYGWKTVDQAE-TYTKGADR--IRLGIKNSRRIS 340 +I G + + G + Y+ R K + + Sbjct: 299 SILIHHGFSILYISKHLGHSNPATTQSIYSHLLQETYEREDEKAMKLLE 347 >gi|307565729|ref|ZP_07628198.1| phage integrase, N-terminal SAM domain protein [Prevotella amnii CRIS 21A-A] gi|307345555|gb|EFN90923.1| phage integrase, N-terminal SAM domain protein [Prevotella amnii CRIS 21A-A] Length = 292 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 44/273 (16%), Positives = 93/273 (34%), Gaps = 22/273 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESR--- 126 + ++ ++ + S+ + D + I + IR+ VE Sbjct: 4 VEQFLSYLSLEKGYSLKTIESYREDLNGFELFYKSCDEQLTLKSIDSDVIRNWVEYMMDN 63 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 K SS + L+++R L+++ ++ +V +P V PK++ + +M Sbjct: 64 KAAVSSVNRRLSALRSLYRYLLKHRFVEKDPVHGVRGPKKQKPLPVFVKESEMDCLLRKE 123 Query: 187 SEGSQ-----PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDG 240 G R L +G+R S+ + + + T K + + Sbjct: 124 MWGGVYNDVLARAIIMMLYETGMRLSEITGLDMSSVDFYTCTVKVTGKRNKQRIIPIGQE 183 Query: 241 FMKLLAMTPIGK------ETFFINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGVRKF 292 + L + + FF+ ++NA Q K +K ++ H +R Sbjct: 184 LEEELKSYLKKRVSVEGEKAFFVTEKGIRVNANQVRYLVKKNLSKVSTLKKRTPHVLRHS 243 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKG 325 AT + A + G +++ E YT Sbjct: 244 FATAMLNHKAGLESVRKLLGHESLATTEVYTHT 276 >gi|83313349|ref|YP_423613.1| site-specific tyrosine recombinase XerC [Magnetospirillum magneticum AMB-1] gi|82948190|dbj|BAE53054.1| Integrase [Magnetospirillum magneticum AMB-1] Length = 314 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 37/294 (12%), Positives = 81/294 (27%), Gaps = 29/294 (9%) Query: 66 KKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--------DYRKITT 116 L + + + + ++ + + + + Sbjct: 9 AAKADLARAVESWWQWLGSERRASSHTLDGYGRDLAAFLTFLTEHLAAEPDLAALASLGA 68 Query: 117 KHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 R+ + R SS + ++++R FK+ R + V +V+ P+ +P Sbjct: 69 GDFRAFLARRTQDGLGRSSLARLMSTLRGFFKFLDRHDLVHNPALKAVKSPRPPKSVPKP 128 Query: 174 WTKEDMQQFK-------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226 ++ + ++ F L +GLR ++ + L + T Sbjct: 129 LAPDEALEALSSAGELHDEPWLAARDVALFTLLYGAGLRLGEALSLTRRDLPKGDTMVIT 188 Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ-------KMNATQFSIWFKAKATK 279 K V + +A D +N + Sbjct: 189 GKGNKQRVVPVLPVVRDAIADYLKRLPYPAEPTDPIFLGARGGPLNPGVVQRQMRRLRQM 248 Query: 280 AGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 G+ + H +R AT G + G ++ + YT D RL Sbjct: 249 MGLPETATPHALRHSFATHLLAGGGDLRTIQELLGHSSLSTTQRYT-EVDAARL 301 >gi|148977143|ref|ZP_01813783.1| site-specific recombinase, phage integrase family protein [Vibrionales bacterium SWAT-3] gi|145963612|gb|EDK28874.1| site-specific recombinase, phage integrase family protein [Vibrionales bacterium SWAT-3] Length = 375 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 53/324 (16%), Positives = 100/324 (30%), Gaps = 12/324 (3%) Query: 11 VTKERTRHGKIIYYFR---KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67 + G+ +++ R G R +L + + A AL R Sbjct: 31 LYLRVYPSGRRVFFVRFQHNGLRRNHKLGSALDYSLRQARREALQVVQQVRS-PKMETLP 89 Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR 126 TL+ E+ K N+ ES F QI GD + + I + Sbjct: 90 SITLQAFGQEFFKRY-PRHWKPNTLKKNESAFRLQIAPYLGDREVQSIVRSDVEQWFTQL 148 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINP-----CLSVERPKRKTEGIRPWTKEDMQQ 181 H SA Q L + V+ + EY N + + + + ++ + Sbjct: 149 SHVKGSANQALVLLSVMMQQCEAWEYRPKNTNPCRGFKRYKAGEVERYLSKDELRQLWRV 208 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 + + + L+Y+G R S+ + + + + KTG Sbjct: 209 LDTLEGDNPAKVMIIRLLIYTGCRSSEVRTLQWKEYRGGHWHLLDSKTGAKTVYLCSQVR 268 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300 L A F + + ++ Q I+++ AG+ H +R A+I+ + Sbjct: 269 AYLDAWQSESHYLFPAPCNTKPISTNQLGIFWRQARQLAGLEGVRLHDLRHTYASIAIQS 328 Query: 301 GATAHELMATYGWKTVDQAETYTK 324 L G + Y Sbjct: 329 KVNLIVLSRLLGHAEAETTLKYAH 352 >gi|227893507|ref|ZP_04011312.1| integrase-recombinase [Lactobacillus ultunensis DSM 16047] gi|227864677|gb|EEJ72098.1| integrase-recombinase [Lactobacillus ultunensis DSM 16047] Length = 302 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 35/265 (13%), Positives = 90/265 (33%), Gaps = 24/265 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKS-------GDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137 + + +S+ + + + G + + + RK SS + + Sbjct: 19 RHYSSKTVLSYRTDLLEAKKFWQENGGFNGWIKVNERDVQVYLQHLADRKLARSSQQRQM 78 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPR 193 +S+ +++ R+ + I+P ++ + + + + + +++Q + Sbjct: 79 SSLHSFYRFLTRRRIIKIDPTQAITLRRGEKKLPEFFYQPEIKQVFDSLQGNKPLTVRNL 138 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKLLAMT---- 248 FE +G+R S+ ++ + ++ +I K V D K L Sbjct: 139 ALFELFYATGMRVSEVSGLTLKQIDLSLQTILVHGKGNKDRYVAFDDRTKKSLVNYLENA 198 Query: 249 ------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300 ++ F++N + ++ + +AG+ H +R AT + Sbjct: 199 RPKLLKDETEQHVFLSNLGKPISDRGIQYVMQKTFNQAGISGKVHPHELRHTFATAMLNN 258 Query: 301 GATAHELMATYGWKTVDQAETYTKG 325 GA + G + + YT Sbjct: 259 GADLRSVQELLGHSDLSATQIYTHV 283 >gi|183600284|ref|ZP_02961777.1| hypothetical protein PROSTU_03843 [Providencia stuartii ATCC 25827] gi|188020074|gb|EDU58114.1| hypothetical protein PROSTU_03843 [Providencia stuartii ATCC 25827] Length = 309 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 40/279 (14%), Positives = 97/279 (34%), Gaps = 22/279 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT------TKHIRSGVESRK 127 + + + L+ + ++ ++ + + + +++ + + Sbjct: 17 VEAFLRYLQIERRLSPVTITNYRRQLTVVVEMLNEMNVSEWRQLDATKARNVAAKSRRKG 76 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +S L+++R W V+Q+ ++ NP +V PK K + +++ + S S Sbjct: 77 LQAASMALRLSALRSFCDWMVQQDKLSANPVTAVHAPKAKKRLPKNMDVDEVSKLLSMES 136 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243 + R E + +GLR S+ V+HL + ++ + L + Sbjct: 137 GDPLVVRDRTMLEVMYGAGLRLSELVGLDVRHLDLAMGEVRVMGKGSKERKIPLGKTAVS 196 Query: 244 LLAMTPIGKETFFINN--------DKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293 L +E + + ++++ F+ K GV + + H +R Sbjct: 197 WLKRWLEMRELYEPEDGAVFISTKSGKRISNRNVQKRFEQWGIKQGVNSHINPHKLRHSF 256 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 AT ++ + G + + YT D L Sbjct: 257 ATHILESSGNLRGVQELLGHANLSTTQIYTH-LDFQHLA 294 >gi|153005509|ref|YP_001379834.1| phage integrase family protein [Anaeromyxobacter sp. Fw109-5] gi|152029082|gb|ABS26850.1| phage integrase family protein [Anaeromyxobacter sp. Fw109-5] Length = 381 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 44/333 (13%), Positives = 93/333 (27%), Gaps = 23/333 (6%) Query: 15 RTRHGKIIY--YFRKGHGRRIRLPYPHE---STFIPAYMSALTGSTPKREYINSPRKKPT 69 R++ G I R G+ +R + T + + + +P KK Sbjct: 15 RSKRGGWICEIRIRLASGQIVRERVVAQVANKTEARLWAAKRRDQILAQGGTEAPVKKEV 74 Query: 70 -TLKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR- 126 TL ++ + A ++ + E + + + GD ++ ++ Sbjct: 75 LTLAEFWPKFIEGHAQANQQKPSTIATHERIWKKHLSSLGDRRLDEVDDAQVQLLKGRLS 134 Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 K P S +T + + K V + PC K +E + + Sbjct: 135 AQKLKPKSVNNVVTVLSKMLKVGVEWRVIEAMPCRIRLLKSAKPVVEFYEDEELERLVSA 194 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-----------TII 233 + +A +GLR + L +K Q++ Sbjct: 195 AGKVDPRTHVAVLLGGDAGLRLGEILALEWSDLDFTRGLMKVQRSECDGAVTLPKGGKPR 254 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291 V + L K + + + +AG+ + H +R Sbjct: 255 VVPMTARLKAALHAHRHLKGPRILYEGIEPITKWPLKWLIDVAERRAGLRQGGRVHILRH 314 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324 + A + G ++V+ Y Sbjct: 315 TFCSRLAARNVPMLTIKGLAGHQSVETTMRYLH 347 >gi|218680623|ref|ZP_03528520.1| site-specific tyrosine recombinase XerD [Rhizobium etli CIAT 894] Length = 311 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 43/290 (14%), Positives = 85/290 (29%), Gaps = 35/290 (12%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRKH 128 + + + A N+ S+E D + + + + + Sbjct: 9 VESFLEMMSAERGAAANTLQSYERDLDDVSAFLKERGIRLTEAASADLAAYLASLARKGF 68 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 PSS + L +MR +K+ + +P ++ PK+ + E++ + S Sbjct: 69 KPSSQARRLAAMRQFYKFLYAEGLRTDDPTGILDAPKKGRPLPKTMGVEEVGKLLSQAET 128 Query: 189 GSQP-----------RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVE 236 +Q E L +G+R S+ + L + K V Sbjct: 129 EAQDAAPGQLQRLRMLALLELLYATGMRVSELVSLPARVLDQEGRFLMIRGKGNKERLVP 188 Query: 237 LPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 L + L F + + + F+ K A +AG+ Sbjct: 189 LSQSAISALKSYGRLLAAENAAVKDPQESPWLFPAASKEGYLPRQVFARDLKNLAIRAGL 248 Query: 283 N---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 S H +R A+ GA + G + + YT + Sbjct: 249 TPSMISPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEER 298 >gi|148552940|ref|YP_001260522.1| phage integrase family protein [Sphingomonas wittichii RW1] gi|148498130|gb|ABQ66384.1| phage integrase family protein [Sphingomonas wittichii RW1] Length = 301 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 50/295 (16%), Positives = 95/295 (32%), Gaps = 27/295 (9%) Query: 72 KWLISEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 I+++ + A N+ +++ S G T G E + Sbjct: 4 SEAIAQFLEMLAAEGGAARNTLLAYGSDLRGASELLGGGLVGADTAGLQTLGGEWMALSR 63 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 +S + + +R F + + +P ++ RP + R + D+++ E Sbjct: 64 TSVARKASVLRRFFAFLEEEGIRRDDPSDALPRPAVQRALPRTLSHGDIERLFDTLEERR 123 Query: 191 QPRLAF----------EFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239 + R A E L SGLR ++ L+ + + K G V + D Sbjct: 124 RDRHADPLTLRLIALVELLYGSGLRATELVSLPRHALRGDRPFLILRGKGGRERLVPISD 183 Query: 240 GFMKLLAMTPIGKETFFINND---KQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFS 293 +A T ++ + + A +AG+ S H +R Sbjct: 184 RARMAVAEWGAHVPTDQPWLFPSGHGHLSRVRLFQLVRELAAEAGIPPQRISPHVLRHAF 243 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 AT + GA L G + + YT NS + +V++ P Sbjct: 244 ATHLLEGGADLRALQTMLGHADIATTQIYTHV---------NSAHLVELVNARHP 289 >gi|107100187|ref|ZP_01364105.1| hypothetical protein PaerPA_01001210 [Pseudomonas aeruginosa PACS2] Length = 328 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 41/324 (12%), Positives = 97/324 (29%), Gaps = 24/324 (7%) Query: 11 VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 +T + G+ G+R R + + +A + + P+ + Sbjct: 1 MTITKLPDGRWFVDVEPIKGKRFRKRFKTKMEAQQIEANARQKCSENPNWTIKPKDRRR- 59 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFES---YFDQIIRKSGDFDYRKITTK---HIRSGVE 124 L L+ + + L + + + I + GD + +RS Sbjct: 60 LSELVELWYE------LHGQTLANGKRCVAILRLIAKDLGDPVAVSLEPAKVACVRSLQV 113 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK- 183 ++ + A L ++ ++ + + + RP + E + + Sbjct: 114 AKGMSGKYANNRLGYLKSMYNELRQLGTIDYENPVGRMRPLKLQEKPLSYLTKHQVSELL 173 Query: 184 ---SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 + P++ L +G R ++ + L+ N K+ + +V + +G Sbjct: 174 AALDARTTSPHPKMVARICLATGARWGEAQALTLDRLKGNTVIFANTKSKRVRSVPISEG 233 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADA 300 K + F F I + + K +++H +R A+ Sbjct: 234 LAKEIRQHWQTHGPFTNCLGV-------FRIVLLSTSIKLPRGQASHVLRHTFASHFIMN 286 Query: 301 GATAHELMATYGWKTVDQAETYTK 324 G L G ++ Y Sbjct: 287 GGHIVTLQHILGHASLSMTMRYAH 310 >gi|229190701|ref|ZP_04317697.1| DNA integration/recombination/invertion protein [Bacillus cereus ATCC 10876] gi|228592834|gb|EEK50657.1| DNA integration/recombination/invertion protein [Bacillus cereus ATCC 10876] Length = 369 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 48/366 (13%), Positives = 118/366 (32%), Gaps = 44/366 (12%) Query: 17 RHGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + G G+R + + T A + + + TL Sbjct: 7 KRGNKYCIVIDIGPDPETGKRRQKWFSGYKTKKEA-QADVAKKITELNEGTFIEPSKVTL 65 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 K ++ + + S+ ++ + ++ + +I G K+ HI+ ++ Sbjct: 66 KDYLNHWLE-IKSISIEKSTFAGYRAFINQHVIPSIGMVALHKLNVIHIQKCYKTAIDKG 124 Query: 131 SSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + L ++ AV+Q ++ NP E PK++ I+ WT+E++++F + Sbjct: 125 IANNSILLMHRILKSALNLAVKQNIISRNPADFAEIPKKEKPPIQTWTEEEVKKFLAHSQ 184 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--------------TGTII 233 E S+ + + + +G+R + Q + ++ + + Sbjct: 185 E-SRYHIGYLLAITTGMRLGEVLGLRWQDIDFEKHTVTINQTSGHDNKIKKTAKTNSSKR 243 Query: 234 TVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKAKATK 279 T+ +P+ ++ L + ++ N + + F F K Sbjct: 244 TIPVPNETIEALKKHKILINKEKLRFGSAYLDQDLINCNEFGRIIKRAHFRKSFIRMTHK 303 Query: 280 AGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSR 337 G+ H +R AT+ G + G + Y+ + + + Sbjct: 304 VGIKEIKFHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLSVYSHVLPN--MQEEAVK 361 Query: 338 RISSVV 343 + Sbjct: 362 NFGKSI 367 >gi|77463394|ref|YP_352898.1| integrase/recombinase XerD [Rhodobacter sphaeroides 2.4.1] gi|77387812|gb|ABA78997.1| Probable integrase/recombinase XerD [Rhodobacter sphaeroides 2.4.1] Length = 311 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 51/289 (17%), Positives = 97/289 (33%), Gaps = 33/289 (11%) Query: 72 KWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVES 125 + IS + ++ A N+R+++ G +T + + E+ Sbjct: 7 ERWISAFLEAQAAELDAARNTRLAYGRDLKDYATWLGRRSEDFLTATRDTVEAYLTFCEA 66 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + + ++ + L+S+R L+++ + + A NP + + P R + E++ + Sbjct: 67 QGLSSATRARRLSSIRQLYRFGHEEGWRADNPAIRISGPGRSKRLPKTLEIEEVDRLLEA 126 Query: 186 WSEGSQ-------PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVEL 237 + + R E L +G+R S+ V + N I K G V L Sbjct: 127 ARDKGRRAEDQIRNRCLLELLYATGMRVSEMVGLPVAAARGNPRMILVRGKGGKERMVPL 186 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQ----------------KMNATQFSIWFKAKATKAG 281 + LA ++ K + F + K A AG Sbjct: 187 SPPAREALADWLRARDAAEAQGQKAGRPASRFLFPGSGAAGHLTREYFYVLVKQIAVLAG 246 Query: 282 VN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 V+ + H +R AT GA + G + E YT D Sbjct: 247 VDPAKVTPHTLRHAFATHLLAGGADLRVIQTLLGHADLSTTEIYTHVLD 295 >gi|323143371|ref|ZP_08078059.1| phage integrase, N-terminal SAM-like domain [Succinatimonas hippei YIT 12066] gi|322416889|gb|EFY07535.1| phage integrase, N-terminal SAM-like domain [Succinatimonas hippei YIT 12066] Length = 297 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 48/264 (18%), Positives = 82/264 (31%), Gaps = 22/264 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDY--RKITTKHIRSG--VESRKHTPSSAIQFLTSM 140 L S ++ S Q K ++K I + + S +FL SM Sbjct: 19 RGLLPKSITAYLSDLHQFFCYLDSVGVEPAKFSSKDIEGFLASAKDRLSARSTARFLCSM 78 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAF 196 R + + Y +P ++ PK + ++ + +F + G + R F Sbjct: 79 RAFSAFLKLENYRDDDPLSLIDNPKLPQSLPKIMSEATVDEFINAITTDTDVGLRDRAMF 138 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255 E + GLR S+ L I K V L D + + Sbjct: 139 ETVYSCGLRVSELVNLTFDSLNLVDGYLIIRGKGDKERLVPLGDNAVWWIKRYLAEGRIS 198 Query: 256 FINNDKQKM-----------NATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302 ++ + F K A+K G++K S H R AT + A Sbjct: 199 KDPKNQCPYVFLSGKGVGPLSREGFWYRVKYYASKIGLSKAPSPHTFRHAFATHLLNHDA 258 Query: 303 TAHELMATYGWKTVDQAETYTKGA 326 + G ++ + YT A Sbjct: 259 DLRSVQLLLGHSSLTTTQIYTHVA 282 >gi|251772344|gb|EES52912.1| phage integrase family protein [Leptospirillum ferrodiazotrophum] Length = 336 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 49/307 (15%), Positives = 99/307 (32%), Gaps = 37/307 (12%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRK----------SGDFDYRKITTKHIRSGV 123 L YR++ + + + + + + Sbjct: 32 LCQAYRRNLVLSGRSPKTLKAAMDDLALLAALEARLLEGGAGFLWERLDRPRALRFVKRL 91 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 R + PSS + L+S+R + + Q ++A +P + P+ T+ + + Sbjct: 92 HDRGYAPSSIARILSSLRGFYGFLKTQGHIAEDPFAGISGPRANRPLPPLLTETEAETLV 151 Query: 184 SFWSEGS-----------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-T 231 + + R E +G+R S+ C + I S++ + G Sbjct: 152 TAPVRNPVPKGGDEGTSLRDRAILELFYQTGVRLSELCGLLWEDAAPGIVSLRVRGKGGK 211 Query: 232 IITVELPDGFMKLLAMTPIG--------KETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 V + +K L F + D ++ Q S K A +AG+ Sbjct: 212 ERRVPVVGEALKALCALREFLLKSGVSPTGPLFADGDGGALSPWQVSRIVKKYAREAGLQ 271 Query: 284 KS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 K+ H +R AT D A E+ + G ++ + Y + +R++S Sbjct: 272 KTVSPHALRHSCATHLLDREADLREIQSLLGHASLGSTQRYLHTG-----LSEIARKLSK 326 Query: 342 VVDSDDP 348 + D P Sbjct: 327 IRDETPP 333 >gi|159044160|ref|YP_001532954.1| tyrosine recombinase [Dinoroseobacter shibae DFL 12] gi|157911920|gb|ABV93353.1| tyrosine recombinase [Dinoroseobacter shibae DFL 12] Length = 308 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 52/289 (17%), Positives = 96/289 (33%), Gaps = 33/289 (11%) Query: 74 LISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSG---VESRK 127 I + + + A N+R+++ D+ ++ I + Sbjct: 5 WIDAFLDAQAAELNAAENTRLAYARDLMDFQGHIRRRGLDFDQVQRADIETYLIACSDAG 64 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185 + ++ + L+++R L+++A + + NP L ++ P R + ++ D+ + + Sbjct: 65 LSQATRARRLSAIRQLYRFAYEEGWRTDNPSLQIKGPGRAKRLPKTLSEADVDRLLAAAR 124 Query: 186 ---WSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD 239 S + R A L +GLR ++ C V ++ + I K G V L Sbjct: 125 NTGRSPSDRQRNACMLELLYATGLRVTELCGLPVAAVRGDPHLILVRGKGGKERMVPLST 184 Query: 240 GFMKLLAMT----------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 L K F + +F K A AGV+ Sbjct: 185 PARTELQAWLKVRDAAEQTAISKGAAPSKYLFPSRGKLGHLTRHRFYALIKDIAVAAGVD 244 Query: 284 ---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + H +R AT GA + A G V E YT D Sbjct: 245 PSGVTPHTLRHAFATHLLARGADLMSIQALLGHADVATTEIYTHVLDAR 293 >gi|260101613|ref|ZP_05751850.1| integrase/recombinase XerC [Lactobacillus helveticus DSM 20075] gi|260084576|gb|EEW68696.1| integrase/recombinase XerC [Lactobacillus helveticus DSM 20075] Length = 302 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 37/265 (13%), Positives = 92/265 (34%), Gaps = 24/265 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKS-------GDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137 + + S+++ + + G + ++ + + RK SS + + Sbjct: 19 RHYSELTISSYQTDLLEAKKFWQENGGFDGWKNVQERDIQIYLQNLADRKLVRSSQARQM 78 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPR 193 +S+ F++ R++++ I+P + + + + + +++Q + Sbjct: 79 SSLHSFFRFLTRRKFIKIDPTQGITLRRGEKKLPEFFFGNELKQVFDSLKGNKPLTMRNL 138 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKLLAMT---- 248 FE +G+R S+ ++ + N+ +I K V D K L Sbjct: 139 ALFELFYATGMRVSEVSNLTLRQIDLNLQTILVHGKGNKDRYVAFDDHTKKSLVRYLEDA 198 Query: 249 ------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300 ++ F++N ++ + +AG+ H +R AT + Sbjct: 199 RPNLLKDETEQHVFLSNLGNPLSKRGIEYVMQKTFNQAGISGKVHPHELRHTFATAMLNN 258 Query: 301 GATAHELMATYGWKTVDQAETYTKG 325 GA + G ++ + YT Sbjct: 259 GADLRSVQELLGHSSLSATQIYTHV 283 >gi|225852471|ref|YP_002732704.1| phage-related integrase [Brucella melitensis ATCC 23457] gi|256264035|ref|ZP_05466567.1| phage integrase [Brucella melitensis bv. 2 str. 63/9] gi|225640836|gb|ACO00750.1| phage-related integrase [Brucella melitensis ATCC 23457] gi|263094221|gb|EEZ18098.1| phage integrase [Brucella melitensis bv. 2 str. 63/9] gi|326408987|gb|ADZ66052.1| phage-related integrase [Brucella melitensis M28] Length = 341 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 57/333 (17%), Positives = 113/333 (33%), Gaps = 25/333 (7%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 + G+ YY G +R P + F+ + A + + + Sbjct: 11 KVNAKGRTYYYA-WRGGPALR-GEPGSAEFMASLQEA---------NDSRVIPDASKFRA 59 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVESRKH 128 +I+ Y+ S + LA +++ ++ + D+I +K GD + IR Sbjct: 60 VITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSIAQFDLPQKIRPVIRKWRGEFAD 119 Query: 129 TPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 P +A + + + +AV ++ NPC +++ + WT +D+ + K+ Sbjct: 120 KPRTADYGMQVLSRVLSYAVDPLGKISQNPCEGIKQLYKNDRAAIIWTDQDIARLKTKC- 178 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLL 245 + A + ++GLR D R H+ +N + + + L LL Sbjct: 179 -SPEVAWAVDLAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRHTKEAVIPLYAELRALL 237 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGA 302 P N K F F +A + + H R +AT AG Sbjct: 238 QTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLHFHDFRGTAATKFYIAGL 297 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 + + GW+ + + I+ Sbjct: 298 SERVIAEIMGWE-EETVRNIIRRYVSKTAAIEA 329 >gi|84625422|ref|YP_452794.1| site-specific tyrosine recombinase XerC [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84369362|dbj|BAE70520.1| site-specific recombinase [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 305 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 42/286 (14%), Positives = 94/286 (32%), Gaps = 29/286 (10%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF-------------DYRKITTKHIR 120 + E+ ++ ++ ++ ++ +G+ D ++ + H+R Sbjct: 4 VDEFLTYLQVERQVSAHTLDAYRRDLAALVAWTGERNAEDGAQQTATPVDSAQLDSAHLR 63 Query: 121 SGVE---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 V R +P S + L++ R + W ++ +A +P ++ PK + + + + Sbjct: 64 QFVAAEHRRGLSPKSLQRRLSACRSYYAWLLKHGRIAASPAAALRAPKAQRKLPQVLDAD 123 Query: 178 DMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTII 233 + + G + R E SGLR S+ C + L + + K Sbjct: 124 EAVRLVEVPTDAPLGLRDRALLELFYSSGLRLSELCALRWRDLDLDSGLVMVLGKGSKQR 183 Query: 234 TVELPDGFMKLLAMTPIG-----KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 V + + L F ++ I K A + G+ + Sbjct: 184 LVPVGSHAIAALRQWRRDSGASADAHVFPGRAGGAISQRAVQIRIKQLAVRQGMFKDVHP 243 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R A+ ++ + G + + YT D L Sbjct: 244 HMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTH-LDFQHLA 288 >gi|148261334|ref|YP_001235461.1| phage integrase family protein [Acidiphilium cryptum JF-5] gi|326403318|ref|YP_004283399.1| putative transposase for insertion sequence element [Acidiphilium multivorum AIU301] gi|326404178|ref|YP_004284260.1| putative transposase for insertion sequence element [Acidiphilium multivorum AIU301] gi|146403015|gb|ABQ31542.1| phage integrase family protein [Acidiphilium cryptum JF-5] gi|325050179|dbj|BAJ80517.1| putative transposase for insertion sequence element [Acidiphilium multivorum AIU301] gi|325051040|dbj|BAJ81378.1| putative transposase for insertion sequence element [Acidiphilium multivorum AIU301] Length = 301 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 39/292 (13%), Positives = 89/292 (30%), Gaps = 24/292 (8%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT- 129 + L + L ++ + + T + IR + + Sbjct: 10 VSALRQRMLEDMAMRGLRSATQRDYIRFVQSFAAFL-RRPPDTATAEDIRRFQVHQHESG 68 Query: 130 --PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 P + ++++R F + + ++ L+ + + +++ + Sbjct: 69 VQPPTINCSVSALRFFFTVTLDRPDLSRRLVLAR----SPRKLPDVLSVDEVGRLLEAA- 123 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLL 245 G + + +GLR S+ V + + I+ K L + LL Sbjct: 124 PGIKYKAILGTAYGAGLRVSEVASLKVDDIDSTRMLIRVEQGKGRKDRNAMLSPQLLALL 183 Query: 246 AMTP----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293 + F + ++ Q + A AG+ K S H +R Sbjct: 184 RLWWTEGKRRGVMLPHGWLFPGRSAADPVSTRQINRAVHEAAEAAGIRKRVSPHTLRHSF 243 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSRRISSVVD 344 AT + + G +D Y + A + IR R++S+++ Sbjct: 244 ATHLLEQDVDIRVIQVLLGHSKLDTTALYARVATKTIRSVTSPLERLASLME 295 >gi|269795657|ref|YP_003315112.1| tyrosine recombinase XerC subunit [Sanguibacter keddieii DSM 10542] gi|269097842|gb|ACZ22278.1| tyrosine recombinase XerC subunit [Sanguibacter keddieii DSM 10542] Length = 310 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 39/289 (13%), Positives = 84/289 (29%), Gaps = 28/289 (9%) Query: 74 LISEYRKSAH-WGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGVESRKHT 129 ++ E+ L+ ++ ++ S + G + +R + Sbjct: 16 VLEEFSAHLTSQRGLSEHTVRAYASDLAGLSSFAHQVGAGPLAAVGLDTLRGWLAQMAGR 75 Query: 130 ---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 S+ + ++R + WAVR V +P + + P + Sbjct: 76 DLARSTVARRGAAVRAFYGWAVRSGRVGSDPSVRLGSPTVSKTLPTVLAVDSATALMETA 135 Query: 186 -------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVEL 237 + E L +G+R + +Q + + S++ V Sbjct: 136 RTAAVDGDPAALRAWACVELLYATGVRVGELVSLDLQDVDLDTRSVRVVGKGDKERVVPF 195 Query: 238 PDGFMKLLAMTPIGKET----------FFINNDKQKMNATQFSIWFKAKATKAGVN-KSA 286 L F+ Q+ Q + A V+ + Sbjct: 196 GVPAATALRSWIEDGRPGLERGSGATAVFLGQRGQRWGQRQVRETVHRLSAAASVDDVAP 255 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIK 334 H +R +AT + G+ + G T+ + YT A+R+R + Sbjct: 256 HDLRHSAATHLLNGGSDLRTVQEVLGHSTLSTTQRYTHVSAERLRSSYQ 304 >gi|221641161|ref|YP_002527423.1| Integrase/recombinase [Rhodobacter sphaeroides KD131] gi|221161942|gb|ACM02922.1| Integrase/recombinase [Rhodobacter sphaeroides KD131] Length = 353 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 77/341 (22%), Positives = 137/341 (40%), Gaps = 24/341 (7%) Query: 5 LRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64 ++LP + R +++ Y R R LP H F+ A+ A +P Sbjct: 1 MKLPR--VQRIRRGDRVLCYHRPTGTRLPDLPETH-PEFVAAWAKAEATKPDL-----AP 52 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 ++ ++ R S W A + R+S + ++I + G R + KH+ + Sbjct: 53 PVADKSVAKVVRALRASKRWKGFAASYRLSLRFHLERIETEHGTLPLRGLRQKHVEMDLG 112 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 P L R++F A + +P + + K+ G WT ++ F++ Sbjct: 113 KLDPNPR--NVSLKCWRLIFAQAKADGIIESDPSHEIGKLVTKSPGHVAWTTAEVAAFRA 170 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM-- 242 W+ G++ R AFE L ++G R SD+CR H+ ++ Q+ + + Sbjct: 171 RWAVGTRQRAAFELLAWTGCRVSDACRMTRTHIGSDGLMTFRQQKTGGLAYVPWTCALPS 230 Query: 243 KLLAMTPIGKETFFINN-----------DKQKMNATQFSIWFKAKATKAGVN-KSAHGVR 290 L + + + S + A A +AG+ ++ HG+R Sbjct: 231 WALRWEEERETVRAAVMATAGFTLLETSYGKARSVKGLSNFITAAAAEAGIEGRTPHGLR 290 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 KF T A+AG AH +MA G ++ +AE YT+ A R L Sbjct: 291 KFRLTAIAEAGGPAHAIMAWGGHASLSEAEAYTRAASRRGL 331 >gi|221639249|ref|YP_002525511.1| Phage integrase family protein [Rhodobacter sphaeroides KD131] gi|221160030|gb|ACM01010.1| Phage integrase family protein [Rhodobacter sphaeroides KD131] Length = 311 Score = 116 bits (291), Expect = 5e-24, Method: Composition-based stats. Identities = 52/289 (17%), Positives = 97/289 (33%), Gaps = 33/289 (11%) Query: 72 KWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVES 125 + IS + ++ A N+R+ + G +T + + E+ Sbjct: 7 ERWISAFLEAQAAELDAARNTRLGYGRDLKDYAAWLGRRSEDFLTATRDTVEAYLTFCEA 66 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + + ++ + L+S+R L+++A + + A NP + + P R + E++ + Sbjct: 67 QGLSSATRARRLSSIRQLYRFAHEEGWRADNPAIRISGPGRSKRLPKTLEIEEVDRLLEA 126 Query: 186 WSEGSQ-------PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVEL 237 + + R E L +G+R S+ V + N I K G V L Sbjct: 127 ARDKGRRAQDQIRNRCLLELLYATGMRVSEMVGLPVAAARGNPRMILVRGKGGKERMVPL 186 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQ----------------KMNATQFSIWFKAKATKAG 281 + LA ++ K + F + K A AG Sbjct: 187 SPPAREALADWLRARDAAEAQGQKAGRPASRFLFPGSGAAGHLTREYFYVLVKQIAVLAG 246 Query: 282 VN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 V+ + H +R AT GA + G + E YT D Sbjct: 247 VDPAKVTPHTLRHAFATHLLAGGADLRVIQTLLGHADLSTTEIYTHVLD 295 >gi|110800856|ref|YP_695375.1| phage integrase family site specific recombinase [Clostridium perfringens ATCC 13124] gi|110675503|gb|ABG84490.1| site-specific recombinase, phage integrase family [Clostridium perfringens ATCC 13124] Length = 354 Score = 116 bits (291), Expect = 5e-24, Method: Composition-based stats. Identities = 36/334 (10%), Positives = 89/334 (26%), Gaps = 22/334 (6%) Query: 12 TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK--KPT 69 +++ + + I ++ +G+ + T A A ++ I + Sbjct: 7 YRQKDKGWQFIISYKDYNGKWRQKSKQGFKTKKEAKPIAEKMLQDLKKNIKTSNNSFGKI 66 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129 T K Y + + + + D + KIT I+ +++ Sbjct: 67 TFKAFSDMYLEHEKLYK-EPKTIDGLVTVLHRFQD-LNDKELCKITNLDIQKLIDNMTKE 124 Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 ++ +L + +F A + + + + + +D Sbjct: 125 HLNNNTIRYYLKILNSIFLCAKFKYNILDEVPSKYIKIGKPIPTKKKALNDDEINDLLLK 184 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP-------D 239 + ++ L + +G+R + + N I K I+ Sbjct: 185 FKNNKYYLVVYLAVNTGMRIGEILGLTWNDIDFNNCLISVNKQWKILKDNSWGLGSVKSK 244 Query: 240 GFMKLLAMTP--------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRK 291 ++++ ++ N + + G N S H +R Sbjct: 245 NSIRIIPISNSVSEELLKYKTIINIDNRVFNFKSKNTILSRVNILLKEYGFNISLHELRH 304 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKG 325 AT G G + Y+ Sbjct: 305 TYATKLIANGVDFKTAAKILGHSVEQTMKVYSHV 338 >gi|241206644|ref|YP_002977740.1| site-specific tyrosine recombinase XerC [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860534|gb|ACS58201.1| integrase family protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 311 Score = 116 bits (291), Expect = 5e-24, Method: Composition-based stats. Identities = 42/284 (14%), Positives = 85/284 (29%), Gaps = 30/284 (10%) Query: 77 EYRKSAHW-GSLAVNSRISFESYFDQIIRKS-GDF-------DYRKITTKHIRSGVESRK 127 + ++ L+ ++ ++E Q + G D R++ + R+ + +R+ Sbjct: 18 AWLENLASERRLSEHTLDAYERDTRQFLTFLTGHLAGPVTLGDIRELRSADFRAFLAARR 77 Query: 128 HTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED------ 178 S A + L +R L + ++ V +V PK+ +P + Sbjct: 78 KQGSGARSLGRNLAGLRSLLRHLEKKGLVNAAGAAAVRSPKQPKSLPKPLSDTQAITVVS 137 Query: 179 -MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236 Q ++ L GLR S++ LQ +++ V Sbjct: 138 DDAQLHDEPWIAARDAAVMTLLYGCGLRISEALDLTPADLQKGATTLRITGKGNKTRLVP 197 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-------FSIWFKAKATKAGVN--KSAH 287 L + + A + + G+ + H Sbjct: 198 LLSVIFDAVEKYRTLCPYHLEAGEPLFRGARGGKLQAAIIQRTMQKMRSAFGLPETATPH 257 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +R AT G + G ++ + YT G D RL Sbjct: 258 ALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYT-GVDASRL 300 >gi|110680280|ref|YP_683287.1| tyrosine recombinase XerD [Roseobacter denitrificans OCh 114] gi|109456396|gb|ABG32601.1| tyrosine recombinase XerD [Roseobacter denitrificans OCh 114] Length = 323 Score = 116 bits (291), Expect = 5e-24, Method: Composition-based stats. Identities = 44/308 (14%), Positives = 100/308 (32%), Gaps = 42/308 (13%) Query: 74 LISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSG---VESRK 127 IS + ++ A N+ +++ D+ T + + +++ Sbjct: 7 WISAFLEAQAAELGAARNTLLAYGRDLKDFEGYLHHRTLDFATATQGDVEAYLIACDAQG 66 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + ++ + L++++ L+++A + + + NP L + P R + + ++ ++ + Sbjct: 67 LSKATRARRLSAVKQLYRFAFEEGWRSDNPALQITGPGRDRKLPKTLSEAEVDRLLEAAR 126 Query: 188 EGSQPRL-------AFEFLLYSGLRCSDSC-----RAGVQHLQNNIFSIKTQKTGTIITV 235 + E L +G+R S+ A I ++ ++ Sbjct: 127 TSGRNAADRARNTCLMELLYATGMRVSELVSLPVSAARGDPRMLLIRGKGGKERMVPLSP 186 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQ------------KMNATQFSIWFKAKATKAGV- 282 D + L + + + +F + K A AGV Sbjct: 187 PARDATSEWLQLRDEKEAQKKTEGHPPSRFLFASRGVSGHLTRHRFYLLIKELAVNAGVS 246 Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 + H +R AT GA + G V E YT + R+S Sbjct: 247 PSKVTPHTLRHAFATHLLANGADLRSIQTLLGHADVATTEIYTHVLE---------ARLS 297 Query: 341 SVVDSDDP 348 +V + P Sbjct: 298 ELVLTHHP 305 >gi|187930760|ref|YP_001901247.1| site-specific tyrosine recombinase XerC [Ralstonia pickettii 12J] gi|254799354|sp|B2U7W2|XERC_RALPJ RecName: Full=Tyrosine recombinase xerC gi|187727650|gb|ACD28815.1| tyrosine recombinase XerC [Ralstonia pickettii 12J] Length = 328 Score = 116 bits (291), Expect = 5e-24, Method: Composition-based stats. Identities = 50/298 (16%), Positives = 93/298 (31%), Gaps = 41/298 (13%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGVESRKH- 128 I+ Y + + L+ ++ S+ + + + + D ++ + HIR + Sbjct: 19 IAAYLDALKFERQLSPHTLQSYTRELAVLQRLGAQHAANIDLTQLQSHHIRRMMAQLHGD 78 Query: 129 --TPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + S + L++ R FKW R V NP V PK + + E Sbjct: 79 GLSGRSIARALSAWRGWFKWMALRDAAVTANPVDGVRAPKSPKRLPKALSVEQAVALMEQ 138 Query: 186 WSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------ 229 + R E GLR S+ ++H++ + + Sbjct: 139 LPGDDAETIRDRAVNELFYSCGLRLSELVSLDMRHVKAGAYESASWLDLEAREVQVLGKG 198 Query: 230 GTIITVELPDGFMKLLAMT-------------PIGKETFFINNDKQKMNATQFSIWFKAK 276 TV + + LA P F++ +++ Q + K Sbjct: 199 SKRRTVPVGTKATEALAAWLAVRAQLAKSDAAPEDAHALFLSPRGKRLAQRQIQLRMKRN 258 Query: 277 ATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 A AGV H +R AT + + G ++ + YT D L Sbjct: 259 AIAAGVPADVHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYT-SLDFQHLA 315 >gi|160875353|ref|YP_001554669.1| integrase family protein [Shewanella baltica OS195] gi|160860875|gb|ABX49409.1| integrase family protein [Shewanella baltica OS195] gi|315267553|gb|ADT94406.1| integrase family protein [Shewanella baltica OS678] Length = 296 Score = 116 bits (291), Expect = 5e-24, Method: Composition-based stats. Identities = 36/282 (12%), Positives = 82/282 (29%), Gaps = 19/282 (6%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KH 128 L ++ + + ++ +I D +TT ++ H Sbjct: 9 FDLLYEQHLTNLTLQGKRPATIDAYSRAIRRIAAYF-DCCPDTLTTDDLKRYFADLIASH 67 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + S+ ++ + + + + +N P + T ++ S + Sbjct: 68 SWSTVKLDRNGLQFFYFHVLNKSWQWLNIVK----PPQVKHLPDILTPCEVAIVISLTRQ 123 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDGFMKLLA 246 + ++ F L GLR ++ V + I+ K G V LP + L Sbjct: 124 -LRYQVCFLTLYSMGLRLGEAISLQVGDIDAGLMQVHIRDAKGGKDRLVPLPQRTLLALR 182 Query: 247 MTPIGKETFFINNDKQKMNATQF------SIWFKAKATKAGVNK--SAHGVRKFSATISA 298 + K + ++K S H +R AT Sbjct: 183 YYWRTHRHPHWLFPGKDNQPDSLMDRGGLQKAMKQVILECNIHKAISPHSLRHSYATHLL 242 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSRRI 339 + G + G +++ YT+ D + + ++ Sbjct: 243 EQGLDLRSVQTLLGHHSLNTTARYTRLTDITRKNTCEAINQL 284 >gi|269120003|ref|YP_003308180.1| integrase family protein [Sebaldella termitidis ATCC 33386] gi|268613881|gb|ACZ08249.1| integrase family protein [Sebaldella termitidis ATCC 33386] Length = 344 Score = 116 bits (291), Expect = 5e-24, Method: Composition-based stats. Identities = 41/324 (12%), Positives = 106/324 (32%), Gaps = 21/324 (6%) Query: 33 IRLPYPHESTFIPAYM---------SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83 +R+ + Y A+ + + T L + K+ H Sbjct: 23 VRVTTGWSKDYKQQYKYLGYYTTRKDAMQALAEYNTNPYNIDESEITFGELHERW-KNKH 81 Query: 84 WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL 143 + L+VN+ ++ + F+ + + +I T H+++ ++ + + + + Sbjct: 82 FKDLSVNTIKTYNTAFNY-CKPILNLKMTEIKTVHLQNFIDDLNKNHGTLMILKNVINQV 140 Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203 F++A++ + + + + KRK + + + + ++Y+G Sbjct: 141 FEYAMKLDIIQKDYSKFINVGKRKVLKEKSVFTDAEIDLLWDNLQNFKYADTILIMIYTG 200 Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTG----TIITVELPDGFMKLLAMTPIGKETFFINN 259 +R + Q + +I +++ + + +L+ + + Sbjct: 201 MRIGELLSLMKQDVDLIEQTITVKESKTAAGRNRVIPIHPRIKELIHIRYEHSNIDNLIA 260 Query: 260 DKQKMNA----TQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKT 315 + +F +N + H R AT DAG A + G ++ Sbjct: 261 SATNKTSLEYVNYLRHFFAPVMKSLKMNHTPHDCRHTFATRLNDAGGNATAIKKMIGHES 320 Query: 316 VDQAE-TYTK-GADRIRLGIKNSR 337 E YT D +R ++ Sbjct: 321 FTLTEKVYTHKKIDELRKALELVN 344 >gi|89898494|ref|YP_515604.1| site-specific tyrosine recombinase XerC [Chlamydophila felis Fe/C-56] gi|123763207|sp|Q253S9|XERC_CHLFF RecName: Full=Tyrosine recombinase xerC gi|89331866|dbj|BAE81459.1| integrase/recombinase [Chlamydophila felis Fe/C-56] Length = 312 Score = 116 bits (291), Expect = 5e-24, Method: Composition-based stats. Identities = 39/294 (13%), Positives = 94/294 (31%), Gaps = 42/294 (14%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQI---IRKSG------------------DFDYRKIT 115 +Y K+ + ++ ++ + + K G + + T Sbjct: 10 DYLKNIKAA--SPHTLRNYCIDLNSFKVFLEKHGKLSPSMPICLFSKERQETNLPFSLFT 67 Query: 116 TKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 +R + + + L++++ + ++ + +P ++ P+ E Sbjct: 68 KDAVRLYILELMQENKAKRTIKRRLSAIKSFSHYCLKHRILLEDPTETIHGPRLPKELPS 127 Query: 173 PWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228 P T E ++ + G + R E SGLR S+ + N I+ + Sbjct: 128 PITYEQVEILMATPDLSKYTGLRDRCLLELFYSSGLRISEIVSLNHWDIDFNSNLIRIRG 187 Query: 229 T-GTIITVELPDGFMKLLAMTPIGKET---------FFINNDKQKMNATQFSIWFKAKAT 278 + + + L E F+N ++ F+ Sbjct: 188 KGKKERIIPITTLAAQWLKQYLNHPERAGVAKDSQAIFLNCFGTRLTTRSIDRKFQKYLR 247 Query: 279 KAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 +G+ N + H +R AT + G + A G +++ YT + +++ Sbjct: 248 LSGLSGNITPHTIRHTIATHWLENGMDLKTIQALLGHSSLETTTIYTHVSMKLK 301 >gi|59713090|ref|YP_205866.1| site-specific tyrosine recombinase XerC [Vibrio fischeri ES114] gi|197336470|ref|YP_002157268.1| tyrosine recombinase XerC [Vibrio fischeri MJ11] gi|59481191|gb|AAW86978.1| site-specific tyrosine recombinase [Vibrio fischeri ES114] gi|197317960|gb|ACH67407.1| tyrosine recombinase XerC [Vibrio fischeri MJ11] Length = 303 Score = 116 bits (291), Expect = 5e-24, Method: Composition-based stats. Identities = 37/283 (13%), Positives = 85/283 (30%), Gaps = 22/283 (7%) Query: 71 LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGVESR 126 + + + L++ ++ +++ I + G ++ + +R Sbjct: 9 FSKHLDAFYEFLRNEKGLSIYTQRNYKRQLTTIAEQLVELGVESWQDVDAGWVRQVTSKG 68 Query: 127 KHTPSSAIQFLTSMRV---LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 A T + F + V + + NP V P++ + ++M Q Sbjct: 69 MREGLKASSLSTRLSSLRSFFDFLVLRNVLTANPAKGVSAPRKSRPLPKNIDVDEMGQLL 128 Query: 184 SFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPD 239 + + R E + +GLR ++ V+ +Q ++ V Sbjct: 129 EVNEDDPLSIRDRAIMELMYGAGLRLAELVSIDVRDIQLRQGELRVIGKGDKERKVPFSG 188 Query: 240 GFMKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKAGV--NKSAHGV 289 + L + +K +++ K GV + S H + Sbjct: 189 QAKEWLGHWLRVRNQLAKPEEKGLFVSKLGVRISHRNVQKRMAEWGLKQGVNSHISPHKL 248 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 R AT ++ + G + + + YT D L Sbjct: 249 RHSFATHMLESSGNLRAVQELLGHENISTTQIYTH-LDFQHLA 290 >gi|330719126|ref|ZP_08313726.1| site-specific recombinase, phage integrase family protein [Leuconostoc fallax KCTC 3537] Length = 308 Score = 116 bits (291), Expect = 5e-24, Method: Composition-based stats. Identities = 39/279 (13%), Positives = 88/279 (31%), Gaps = 28/279 (10%) Query: 75 ISEYRKSAHWGSL-AVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRKHT 129 + YR + L + + ++ + + G Y K+ T IR + Sbjct: 6 LQLYRDYLEFERLYSAQTIKAYMIDIHEFVDFLKQNGGFTSYAKVQTLDIRVYLNDLYER 65 Query: 130 ---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ----- 181 ++ + ++S+R+ +++ V + NP +V K + + +E+M+ Sbjct: 66 SLARTTIARKISSLRMFYQFLVANHVLEDNPFENVALRKHQNHLPEFFYEEEMKVLFDTA 125 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-------------NIFSIKTQK 228 + + E L +G R ++ + L + + Sbjct: 126 YNQHTKLWQRNAALLELLYATGARVAEIVNLRLPQLDFSKKLVLLRGKGDKERYVPFGKF 185 Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 I+ + +LL + F+NN + S ++ + Sbjct: 186 ADHILQRYTQELRQELLTQYQQDHDFVFVNNRGAPLTTAGVSYILSQLMKQSSLNGKIHP 245 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 H +R AT + GA + G + + YT Sbjct: 246 HMLRHTFATHLLNHGADMRTVQELLGHVNLSTTQVYTHV 284 >gi|260575109|ref|ZP_05843110.1| integrase family protein [Rhodobacter sp. SW2] gi|259022731|gb|EEW26026.1| integrase family protein [Rhodobacter sp. SW2] Length = 313 Score = 116 bits (291), Expect = 5e-24, Method: Composition-based stats. Identities = 45/271 (16%), Positives = 91/271 (33%), Gaps = 32/271 (11%) Query: 90 NSRISFESYFDQIIRKSGDF--DYRKITTKHIRSG---VESRKHTPSSAIQFLTSMRVLF 144 N+++ + D+ + + + ++ ++ + L+S+R L+ Sbjct: 25 NTQLGYGRDLADFADWLARQGGDFATASRATVEAYLVFCGAQGLAAATRARRLSSIRQLY 84 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-------EGSQPRLAFE 197 ++AV + + A NP L ++ P + + + ++++ E ++ E Sbjct: 85 RFAVEEGWRADNPALRLKGPAQAQHLPQVLSLAEVERLLQAARDKGRTGAEQARNAALLE 144 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKLLAMTPIGK---- 252 L +G+R S+ V ++ + I K G V L LA + Sbjct: 145 LLYATGMRVSELVGLPVAAVRGDPRMILVRGKGGKERMVPLSPPARAALADWLAQRDTAE 204 Query: 253 ------------ETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATIS 297 F + + F K A +AGV+ + H +R AT Sbjct: 205 AVAVKAGKPASKHLFPNRSAAGHLGREVFYALIKDIAVRAGVDPSKVTPHTLRHAFATHL 264 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADR 328 GA + G + E YT D Sbjct: 265 LAGGADLRVIQTLLGHADIATTEIYTHVLDE 295 >gi|256369391|ref|YP_003106899.1| site-specific recombinase, phage integrase family [Brucella microti CCM 4915] gi|255999551|gb|ACU47950.1| site-specific recombinase, phage integrase family [Brucella microti CCM 4915] Length = 341 Score = 116 bits (291), Expect = 5e-24, Method: Composition-based stats. Identities = 58/333 (17%), Positives = 113/333 (33%), Gaps = 25/333 (7%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 + G+ YY G +R P + F+ + A + + + Sbjct: 11 KVNAKGRTYYYA-WRGGPALR-GEPGSAEFMASLQEA---------NDSRVIPDASKFRA 59 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVESRKH 128 +I+ Y+ S + LA +++ ++ + D+I +K GD + IR Sbjct: 60 VITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSIAQFDLPQKIRPVIRKWRGEFAD 119 Query: 129 TPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 P +A + + + +AV ++ NPC +++ + WT +D+ + K+ Sbjct: 120 KPRTADYGMQVLSRVLSYAVDPLGKISQNPCEGIKQLYKNDRAAIIWTDQDIARLKTKC- 178 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLL 245 + A + ++GLR D R H+ +N + + + L LL Sbjct: 179 -SPEVAWAVDVAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRHTKEAVIPLYAELRALL 237 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGA 302 P N K F F +A + + H R +AT AG Sbjct: 238 QTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLHFHDFRGTAATKFYIAGL 297 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 + + GW+ + R I+ Sbjct: 298 SERVIAEIMGWEEETVRNIIRRYVSR-TAAIEA 329 >gi|182415361|ref|YP_001820427.1| integrase family protein [Opitutus terrae PB90-1] gi|177842575|gb|ACB76827.1| integrase family protein [Opitutus terrae PB90-1] Length = 324 Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats. Identities = 43/302 (14%), Positives = 88/302 (29%), Gaps = 32/302 (10%) Query: 55 TPKREYINSPRKKPTTLKWL--ISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-----G 107 P + +W Y + + ++ F+ R Sbjct: 10 EPANPKAEAALPAEVQAEWWQPFENYLAHE--RRYSAYTVRNYRQAFEDFYRWLVLAGVW 67 Query: 108 DFDYRKITTKHIRSG--VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165 + + + + +R R+ + ++ +R FK+ +R+ V NP L V PK Sbjct: 68 ERGFDALQMRELRDFVIEAQRRFGRRTLHNHVSGLRSFFKFWLRRGKVQRNPFLGVPLPK 127 Query: 166 RKTEGIRPWTKEDMQQFK-----------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214 + + T+E M + + RL E L +GLR S+ Sbjct: 128 LEKRLPKFLTEEQMVRLLAGPQQLLASESIDAFTAHRDRLVLELLYGAGLRVSELTGLNY 187 Query: 215 QHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKET-------FFINNDKQKMNA 266 + + + + +L + +M+ Sbjct: 188 GAIDLEAGVARIVGKGRKERLCPIGRVAVAVLRKFRDEFAPATAPDAPVIVTQRGTRMSP 247 Query: 267 TQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + + K A + + H +R AT +AGA + G + + YT Sbjct: 248 REVQLMLKRYLALAELPMDLTPHKLRHSYATHLLNAGADLRLVQELLGHAQLATTQVYTH 307 Query: 325 GA 326 + Sbjct: 308 VS 309 >gi|69245847|ref|ZP_00603664.1| Phage integrase [Enterococcus faecium DO] gi|257882019|ref|ZP_05661672.1| phage integrase [Enterococcus faecium 1,231,502] gi|258615559|ref|ZP_05713329.1| phage integrase family site specific recombinase [Enterococcus faecium DO] gi|293563473|ref|ZP_06677921.1| site-specific recombinase, phage integrase family [Enterococcus faecium E1162] gi|294620814|ref|ZP_06700018.1| site-specific recombinase, phage integrase family [Enterococcus faecium U0317] gi|314947742|ref|ZP_07851149.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0082] gi|68195549|gb|EAN09991.1| Phage integrase [Enterococcus faecium DO] gi|257817677|gb|EEV45005.1| phage integrase [Enterococcus faecium 1,231,502] gi|291599599|gb|EFF30612.1| site-specific recombinase, phage integrase family [Enterococcus faecium U0317] gi|291604475|gb|EFF33961.1| site-specific recombinase, phage integrase family [Enterococcus faecium E1162] gi|313645722|gb|EFS10302.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0082] Length = 380 Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats. Identities = 55/361 (15%), Positives = 115/361 (31%), Gaps = 48/361 (13%) Query: 14 ERTRHGKIIYYF------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67 + ++G+ + F G+ IR + A + +E Sbjct: 7 YKLQNGEKYWGFETYLGKDPKTGKDIRTKRRRFKSKAEAQTALNRLLVDFKEKQEFKINV 66 Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR 126 TT + L + + + +S + + I+ G+ KI+ + + V Sbjct: 67 -TTFQELYELWIDNYRTR-VKPSSVAVAQRFCKNHILPAFGELRLDKISVSYCQKQVNEW 124 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT--EGIRPWTKEDMQQFKS 184 T + +FK+ V E NP P++ + ++ +TK+ +Q F Sbjct: 125 HKTLKQYGFLRKTTAQIFKFGVAMEVCKDNPMSKTLLPRKIEEEQPLKFYTKDQLQLFLQ 184 Query: 185 FWSEGSQPRLAFEFLL--YSGLRCSDSCRAGVQHLQNNIFS-----------------IK 225 E + +L F L Y+G+R S++ + + + Sbjct: 185 NTKENNSVKLYTFFRLLAYTGMRKSEALALQWEDIDYFNKTITIGKTIAQDEFNQVVLQV 244 Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF---------------S 270 + + T++L D +K L + + I + QF + Sbjct: 245 PKTKNSSRTIQLDDFTLKQLRIWQQEQMKIMILYGYNTNSPKQFLFTTNTNKLYYPQVVN 304 Query: 271 IWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGAD 327 W K + + HG R ++ ++GA+ E+ G K + Y Sbjct: 305 DWLDWIYKKTPMEPQITPHGFRHTHCSLLFESGASIKEVQERLGHKDIKTTMNIYAHVTP 364 Query: 328 R 328 + Sbjct: 365 Q 365 >gi|237708280|ref|ZP_04538761.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA] gi|229457833|gb|EEO63554.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA] Length = 376 Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats. Identities = 43/261 (16%), Positives = 88/261 (33%), Gaps = 15/261 (5%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSA 133 Y ++ + ++ ++ +YF + + + R I + I + + ++R + Sbjct: 98 YAETLRQLRYSEHTVRAYTAYFKEFQQYFAGRNLRYIRPEEINAYIVHLIDTRGISSCQQ 157 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193 + S++ F + C V+R KR+ +KE+++ + Sbjct: 158 NLRINSIKFYF----EKVLGLERKCYEVKRAKRERTLPDVLSKEEIKSILDATGPDIRLF 213 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMT--- 248 F L +GLR S+ + + ++ K L ++ L Sbjct: 214 CMFSLLYSAGLRISELLDLKPHDINVSRSLIRVRQGKGRKDRYTLLSKPLVRKLTEYTKL 273 Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHE 306 +E F + + S K A +AG+ K H +R AT + G Sbjct: 274 YKPQEWLFERYKGEPFTESIVSKKLKEAAKEAGITKRVYPHLLRHSFATHLIEQGTDLKI 333 Query: 307 LMATYGWKTVDQAETYTKGAD 327 + G + E Y AD Sbjct: 334 VKELLGHNQLKTTEMYVHIAD 354 >gi|78356628|ref|YP_388077.1| site-specific recombinase XerD-like [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219033|gb|ABB38382.1| Site-specific recombinase XerD-like protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 332 Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats. Identities = 41/283 (14%), Positives = 88/283 (31%), Gaps = 38/283 (13%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI--------RSGVESRKHTPSSAIQF 136 + + + Q D T I + + + SS + Sbjct: 30 KGYSSATVRGYACDLAQFEDFLQRRDMSLDTPADIVPRTIHDFLADLHRQHVGKSSMGRK 89 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG------- 189 L+++R F++ R+ ++ P + P++ R + ++ Sbjct: 90 LSALRGFFRYLARKGFIRSVPTEGITNPRQAQRSPRALNVDQAYAVLDTRTQAASRAQVH 149 Query: 190 ----------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----------IFSIKTQK 228 ++ E L SGLR S++ + H + I Sbjct: 150 VRQAHKREQLTRDLALAELLYGSGLRISEALALDLCHTDPSSGLIKVTGKGSKERIVPLS 209 Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286 + ++L + L ++ ++ F+ ++N Q + AG+ + S Sbjct: 210 DTSRQALQLWLDVRETLDVSGGAEQAVFLGARGGRLNRRQALRIIEDLCRAAGLPQAVSP 269 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 H +R AT +AGA + G + + + YT R Sbjct: 270 HALRHSFATHLLEAGADMRSVQELLGHERLTTTQRYTHLTLRK 312 >gi|312792344|ref|YP_004025267.1| integrase family protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179484|gb|ADQ39654.1| integrase family protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 398 Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats. Identities = 49/377 (12%), Positives = 110/377 (29%), Gaps = 58/377 (15%) Query: 25 FRKGHG---RRIRLPYPHESTFIPAY---------MSALTGSTPKREYINSPRKKPTTLK 72 +R+ G +I + Y + + + LK Sbjct: 16 YRRKDGLWCGQITIGRDESGKQKRQYFYGKTRQEVADKIAKALNDLKNGVYVDPARLLLK 75 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR---KH 128 ++ + +L ++ +ES + I+ G + + + +H+++ S+ Sbjct: 76 DWLNTWLWEYKKQTLRPSTFQDYESLINNHIVPAIGHYKLKDLRPEHLQALYNSKYGNGL 135 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + S+ + A++ V N + PK KT+ QQ E Sbjct: 136 SLSTIKHIHVILHSALDQALKNGLVVRNVSEATTLPKTKTKNEIRVLTLQEQQRFIAALE 195 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------------- 232 G + R AF L SG+R + + +I +++ Sbjct: 196 GERLRPAFLLALASGVRLGELLALKWDCVNLKEGTITIKRSLRRIKTYDKNLPTKTMLAF 255 Query: 233 ---------ITVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQF 269 T+ +P ++ L F + F Sbjct: 256 QEPKTAAGIRTIPVPPVILEELKEHRKRQLEERLQAGSLYEDNNLVFATELGTPIEPRNF 315 Query: 270 SIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADR 328 F KA ++ + H +R AT +A + G + Y+ Sbjct: 316 LRVFYRIIEKANLDINFHALRHTYATRLLEANEHPKVVQELLGHNDISTTLNIYSHVMPE 375 Query: 329 IRLGIKNSRRISSVVDS 345 I+ + +++++ ++ Sbjct: 376 IKKA--AAMKLNNLFEN 390 >gi|298243765|ref|ZP_06967572.1| integrase family protein [Ktedonobacter racemifer DSM 44963] gi|297556819|gb|EFH90683.1| integrase family protein [Ktedonobacter racemifer DSM 44963] Length = 385 Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats. Identities = 55/376 (14%), Positives = 107/376 (28%), Gaps = 50/376 (13%) Query: 17 RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76 + G+ Y R G++ +AL ++E LK + Sbjct: 16 KDGRFAGYIRLEGGKKKYFYGSTRKEVQDKVRAALN----EKERGTLATGPNPLLKDYLP 71 Query: 77 EYRKSA-HWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR---KHTPS 131 E+ ++ A ++ + + S II + G R +T +HI+ + P Sbjct: 72 EWLETVCKPPYRAPSTYLHYRSAMKKHIIPEIGHLKIRNLTPRHIQELYAKKIRDGAKPP 131 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 + + A++ E V+ N V PK I P T+E + + G + Sbjct: 132 TIKLMHEVLSGSLNSALQWEMVSKNVASQVTVPKGVQREIVPLTEEQARVLLE-IARGHR 190 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ-------------NNIFSIKTQKTGTIITVELP 238 + +GLR + + + F +K + Sbjct: 191 LEGMILLAVTTGLRRGEITALKWSDIDFDARLLFIKHTVSHVAFMGYVEKEPKTRAGKRT 250 Query: 239 DGFMKL----------------------LAMTPIGKETFFINNDKQKMNATQFSIWFKAK 276 + L+ F + F Sbjct: 251 IHLPEAVIQTLQQHYSEQKAKAEEMGLSLSEWNPKGLVFLSKLRSYMHSPQTLKE-FHQI 309 Query: 277 ATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIK 334 +AG+ K H +R +ATI G + G ++ Y+ +R + Sbjct: 310 VAQAGLPKMRFHDLRHSAATILLAKGVHPKVVQELLGHSSIAMTMNIYSHVMPSMRKEVA 369 Query: 335 NSRR--ISSVVDSDDP 348 + S + D+P Sbjct: 370 SIMDTIFSEEKEGDEP 385 >gi|218236017|ref|YP_002367298.1| DNA integration/recombination/invertion protein [Bacillus cereus B4264] gi|218163974|gb|ACK63966.1| site-specific recombinase, phage integrase family [Bacillus cereus B4264] Length = 369 Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats. Identities = 48/366 (13%), Positives = 117/366 (31%), Gaps = 44/366 (12%) Query: 17 RHGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + G G+R + + T A + + + TL Sbjct: 7 KRGNKYCIVIDIGPDPETGKRRQKWFSGYKTKKEA-QADVAKKITELNEGTFIEPSKVTL 65 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 K ++ + + S+ ++ + ++ + +I G K+ HI+ ++ Sbjct: 66 KDYLNHWLE-IKSMSIEKSTFAGYRAFINQHVIPSIGMVALHKLNVMHIQKCYKNAIDKG 124 Query: 131 SSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + L ++ AV+Q ++ NP E PK++ I+ WT+E++++F + Sbjct: 125 IANNSILLMHRILKSALNLAVKQNIISRNPADFAEIPKKEKTPIQTWTEEEVKKFLAHSQ 184 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--------------TGTII 233 E S+ + + + +G+R + Q + ++ + + Sbjct: 185 E-SRYHIGYLLAITTGMRLGEVLGLRWQDIDFEKHTVTINQTSGHDNKIKKTAKTNSSKR 243 Query: 234 TVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKAKATK 279 T+ +P+ + L + ++ N + + F F K Sbjct: 244 TIPVPNETIAALKKHKVLINKEKLRFGSAYLDQDLINCNEFGRIIKRAHFRKSFIRMTHK 303 Query: 280 AGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSR 337 G+ H +R AT+ G + G + Y+ + + + Sbjct: 304 VGIKEIKFHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLSVYSHVLPN--MQEEAVK 361 Query: 338 RISSVV 343 + Sbjct: 362 NFGKSI 367 >gi|163787862|ref|ZP_02182309.1| integrase [Flavobacteriales bacterium ALC-1] gi|159877750|gb|EDP71807.1| integrase [Flavobacteriales bacterium ALC-1] Length = 296 Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats. Identities = 33/266 (12%), Positives = 85/266 (31%), Gaps = 28/266 (10%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKHTP---SSAIQFL 137 + ++ +++ + + K+ IR + ++ + + + Sbjct: 14 KKYSKHTALAYIRDIEMFQDFLEEHHDSEVLSKVGYSEIREWIVKLVNSGISNRTVNRKI 73 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED-----MQQFKSFWSEGSQP 192 +S+ FK+ ++ + + INP + K + P+++E+ + E ++ Sbjct: 74 SSLNTYFKFLIKTQTIKINPLKQHKALKVGKKVQLPFSEEELKAVLENSIEVHDFESARN 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIIT-------------VELP 238 L E +G+R + + + K Sbjct: 134 HLIIELFYATGIRRIELVEITINDIDFGNKQLKVLGKRNKERYIPLIDSLIISIKNYLKY 193 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISA 298 ++ + + T + + + +F +TKA S H +R AT Sbjct: 194 RSQLETINDKEVLFLTKKGLKIYEMLVYRIINKYFSEASTKA--KCSPHVLRHSFATHLL 251 Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324 + GA + + G ++ + YT Sbjct: 252 NQGADLNAVKELLGHTSLAATQVYTH 277 >gi|317473501|ref|ZP_07932793.1| phage integrase [Anaerostipes sp. 3_2_56FAA] gi|316899012|gb|EFV21034.1| phage integrase [Anaerostipes sp. 3_2_56FAA] Length = 369 Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats. Identities = 49/360 (13%), Positives = 105/360 (29%), Gaps = 43/360 (11%) Query: 12 TKERTRHGKIIYYFRKGHGRRIRL----PYPHESTFIPAYMSALTGSTPKREYINSPRKK 67 + ++G R + R + ++ + Sbjct: 3 VYKTEKNGTWYAMVRYKDWKGERKQKCQRGFATKREAQEW--------ERQFQLQKQANM 54 Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR 126 TL+ Y L N+ ++ ES +I+ G +IT K + Sbjct: 55 DMTLESFCKLYEADVRPR-LKENTWLTKESIIQSKILPYLGQRKVSEITAKDVIDWQNEM 113 Query: 127 K---------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTK 176 + +P+ + +F A+R ++INP +++ + WTK Sbjct: 114 RSQKGKTGKPVSPTYLKTIHGQLSSIFNHAIRYYDLSINPARKAGTMGAEESKEMLFWTK 173 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---- 232 E+ +F + AFE L + G+R + + ++ K+ Sbjct: 174 EEYLKFAEAMMDKPLSYYAFEMLYWCGIREGELLALTPADFDFHNQTVAINKSYQRLKGR 233 Query: 233 ------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280 V++P + + + + + S A Sbjct: 234 DVITSPKTKKSNRVVKMPQFLSEEMEDCMKLYYSLKSTDRLFPVTKHYLSHEMDRGCKAA 293 Query: 281 GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 GV + H +R ++ D G TA + G ++ Y + + + R+ Sbjct: 294 GVKRIRIHDLRHSHVSLLIDMGFTALAIGDRVGHESEKITYRYAHLFPSKQ--TEMADRL 351 >gi|289579058|ref|YP_003477685.1| integrase [Thermoanaerobacter italicus Ab9] gi|289528771|gb|ADD03123.1| integrase family protein [Thermoanaerobacter italicus Ab9] Length = 291 Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats. Identities = 37/291 (12%), Positives = 86/291 (29%), Gaps = 26/291 (8%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---- 128 + +YR + N+ S+ S ++ +R GD ++ + + ++ Sbjct: 2 DWVEKYRDVLQQSGKSTNTVESYISDINEFLRWFGDTYGKEFDGRILEQDAREYRNYLLN 61 Query: 129 ----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 PSS + + +++ ++ ++ + IR ++ ++ + K Sbjct: 62 IIKLKPSSINRKMAALKNFNQFLIQTGTGTEANICGISVADIHDREIRTISRNELNRLKR 121 Query: 185 FWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQ---------NNIFSIKTQKTGTII 233 R L +G+R S+ +Q + + I+ K G Sbjct: 122 AVYASGNKRDIALIELLIGTGVRVSELVSLTIQDIHLTERNGSQNYSYIVIRNGKGGKYR 181 Query: 234 TVELPDGFMKLLAMT---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGV 289 + L K L + + K +G+ SAH + Sbjct: 182 EIPLNSQVKKALEEYLAIRPSSSDRIFIGQRGPLRRESVDKIIKKYCRISGIEEISAHVL 241 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAET-YTKGADRIRLGIKNSRRI 339 R T G + G V Y + + ++ ++ Sbjct: 242 RHTFCTRLVQEGTPIPVVSKLAGHSNVQTTMDFYVRVSRADKIA--AVEKL 290 >gi|149923898|ref|ZP_01912286.1| Phage integrase [Plesiocystis pacifica SIR-1] gi|149815241|gb|EDM74788.1| Phage integrase [Plesiocystis pacifica SIR-1] Length = 392 Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats. Identities = 44/353 (12%), Positives = 86/353 (24%), Gaps = 23/353 (6%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 R +GK RK + G E +K+ TL Sbjct: 20 RLPNGKTHRERRKSPFSAKSASLRWGRE--RERHLLIHGLATASEDAGPTKKEVPTLAEF 77 Query: 75 ISEYRK-SAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR--KHTP 130 Y + A ++ + +I GD +I ++ ++ Sbjct: 78 APRYMEGYAKANGHKPSTLETKRQVLRLHLIPAFGDKRLDQINSELVQRLKAKLTEHMAN 137 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 S L + + K AV + P + + E K+ ++ Sbjct: 138 KSINNVLGVLNTMLKCAVEWGVLEELPVRAKRMRVKNPSMDFYDFDEYAALVKAAAAQSP 197 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-----------TGTIITVELPD 239 + + +GLR + + + + I TV L Sbjct: 198 ECLVFVLLGGDAGLRAGEIRGLHWAAVDLRRRQLTVEHSEYKGELTTPKYDKIRTVPLTR 257 Query: 240 GFMKLLAMTPIGKE---TFFINNDKQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSAT 295 L P E + + + A + + H +R + Sbjct: 258 RLADALGALPRDCELVLYRGSEGREIPTSRQTGRTMLEKAQDAAKLRRRGPHTLRHTFCS 317 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 A GA A + G ++ + Y + + P Sbjct: 318 HLAMRGAAARVIQQLAGHASLVTTQRYMHLSPGATEA--AIALLEQPAPILKP 368 >gi|312134834|ref|YP_004002172.1| integrase family protein [Caldicellulosiruptor owensensis OL] gi|311774885|gb|ADQ04372.1| integrase family protein [Caldicellulosiruptor owensensis OL] Length = 400 Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats. Identities = 53/365 (14%), Positives = 110/365 (30%), Gaps = 50/365 (13%) Query: 26 RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85 R +GR+ R + ++ + + LK + + Sbjct: 31 RDENGRQKRQYFYGKT--RQEVADKIAKALNDLANGIYVEPARMLLKDWLHTWLWEYKKQ 88 Query: 86 SLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTSMR 141 +L ++ + Y I G + +++ +H+++ + S+ Q T + Sbjct: 89 TLRPSTFKDYLCYIERHINPTIGHYKLKELRPEHLQTLYNVKYQEGLSISTIKQIHTVLH 148 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201 A++ V N + PK K + + QQ E + + AF L Sbjct: 149 SALDQALKNGLVNRNVSEATTLPKGKPKREIRILSLEEQQRFIAALERERLKTAFLVELA 208 Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------------------------ITVE 236 SGLR + + + I+ +++ V Sbjct: 209 SGLRIGELLALRWKDVNFKDGYIEVRRSLQRVRIFDGGNSKKTALAFQEPKTEAGKRIVP 268 Query: 237 LPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 LP ++ L + F ++ F F KAG+ Sbjct: 269 LPPVIIEELKQHRKKQLEEKLKAGALYEDNDLVFATELGTPIDPRNFERLFYRIREKAGL 328 Query: 283 NKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRI 339 +KS H +R AT +A + G K + Y+ I+ + ++ Sbjct: 329 DKSVNFHALRHTYATRLLEANEHPKVVQELLGHKDISTTLNIYSHVMPEIKKA--AAMKL 386 Query: 340 SSVVD 344 +S+ + Sbjct: 387 NSLFE 391 >gi|240145649|ref|ZP_04744250.1| integrase/recombinase XerD [Roseburia intestinalis L1-82] gi|257202271|gb|EEV00556.1| integrase/recombinase XerD [Roseburia intestinalis L1-82] Length = 218 Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats. Identities = 30/200 (15%), Positives = 61/200 (30%), Gaps = 16/200 (8%) Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLA 195 M+ F + ++ + +P ++ PK + R T E++ S + + + Sbjct: 1 MKAFFHFLEKERRIESDPAWRLKAPKIEKTMPRILTTEEVTFLLEQPSGNTPKELRDKAM 60 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255 E L +G+R S+ V L + + + + + L Sbjct: 61 LELLYATGIRVSELISLKVSDLNLQMEYVICTDIHKERIIPFGNVAREALTRYMQDGRDH 120 Query: 256 FINNDKQKM----------NATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGAT 303 I+ + F K KAG+ + H +R A GA Sbjct: 121 LISQADCPWLFTNCTGGAMSRQGFWKLIKFYGKKAGIESEITPHTLRHSFAAHLISNGAD 180 Query: 304 AHELMATYGWKTVDQAETYT 323 + G + + Y+ Sbjct: 181 LKSVQEMLGHSDISTTQIYS 200 >gi|149177761|ref|ZP_01856361.1| integrase/recombinase [Planctomyces maris DSM 8797] gi|148843411|gb|EDL57774.1| integrase/recombinase [Planctomyces maris DSM 8797] Length = 316 Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats. Identities = 36/287 (12%), Positives = 86/287 (29%), Gaps = 25/287 (8%) Query: 75 ISEYRKSAHWG-SLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHI---RSGVESRK 127 + + +AVN+ ++ S Q + ++ + + RK Sbjct: 25 LEPFLHYLEAECGMAVNTVSAYRSDIVQFLDWYRMQKPVPLSEVDLAFLSGYLQHLNRRK 84 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 ++ + L ++++ F++ V + +A + + PK + + E + Q + Sbjct: 85 LAATTVSRHLVTLKLFFRYLVLEGVLAESVADLLNSPKLWKYLPKVLSPEKVNQLLAAPC 144 Query: 188 E----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE------ 236 + R + +G R ++ + ++ + V Sbjct: 145 RQDRYPLRDRAILAMMYATGCRVTEIVTLPLNSVKLTEGYARCVGKGNKERMVSLNPVAV 204 Query: 237 -----LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGV 289 +L ++ F+N ++++ K A + G S H + Sbjct: 205 AAVEAYLRHERPVLTRRNTTEQALFLNRGGKQLSRVMVWNIVKKNAARVGCSKEVSPHTL 264 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 R AT GA L G + + YT + Sbjct: 265 RHSFATHMMAGGAEIRALQELLGHANIRTTQIYTHVDHSRLKAVHQM 311 >gi|326790035|ref|YP_004307856.1| integrase family protein [Clostridium lentocellum DSM 5427] gi|326540799|gb|ADZ82658.1| integrase family protein [Clostridium lentocellum DSM 5427] Length = 374 Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats. Identities = 51/366 (13%), Positives = 115/366 (31%), Gaps = 39/366 (10%) Query: 10 FVTKE-RTRHGKIIYYFRKGHGRRI--RLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 + +E + + G Y R +I + + T + Y N +K Sbjct: 4 YFKREFKKKDGTT--YTRWVGEEKINGKTKSVYGKTEKECKAKIKSLILEHEIYGNELKK 61 Query: 67 KPTTLKWL-ISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGV 123 TL + + + ++ + S ++ I+ G I I++ Sbjct: 62 NIYTLSEWTYKQLYEEVKPH-IQASTFERYMSIYNTHIKNSVIGKTSITDINQIDIQNFF 120 Query: 124 ESRKHTPSSAIQFLT-SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 S+ + ++ + ++R +F++A + + + NPC+ ++ P K + +Q Sbjct: 121 NSKNDMATGVLKIMRYTIRRVFEYAKKHDVIRENPCIGIKIPPSKAKTRDIIIMTLDEQE 180 Query: 183 KSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--------- 232 K + ++ + F L++GLR + +++ +I ++ Sbjct: 181 KFIEAASTRDNKALFLTALFTGLRMGELIALKWENVDLKNGTINVCESYKRVRAYTDNGD 240 Query: 233 ----------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK 276 V +P + +L E F N Q M K Sbjct: 241 SEYIIDKKAPKTKNGNRIVPIPTKLLPILKEIRTDNELVFCNAKGQPMTEITIRREQKRI 300 Query: 277 ATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGA-DRIRLGI 333 +A + + H +R AT + G + G + Y D + + Sbjct: 301 CEQAQIRYINFHALRHTYATRLIENGIDVKTVSMLVGHADIQTTLNIYVHSTDDTKKNAV 360 Query: 334 KNSRRI 339 + Sbjct: 361 NTLDKF 366 >gi|323466640|gb|ADX70327.1| Integrase/recombinase XerC [Lactobacillus helveticus H10] Length = 302 Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats. Identities = 37/265 (13%), Positives = 92/265 (34%), Gaps = 24/265 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKS-------GDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137 + + S+++ + + G + ++ + + RK SS + + Sbjct: 19 RHYSELTISSYQTDLLEAKKFWQENGGFDGWKNVQERDIQIYLQNLADRKLVRSSQARQM 78 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPR 193 +S+ F++ R++++ I+P + + + + + +++Q + Sbjct: 79 SSLHSFFRFLTRRKFIKIDPTQGITLRRGEKKLPEFFYGNELKQVFDSLKGNKPLTMRNL 138 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKLLAMT---- 248 FE +G+R S+ ++ + N+ +I K V D K L Sbjct: 139 ALFELFYATGMRVSEVSNLTLRQIDLNLQTILVHGKGNKDRYVAFDDHTKKSLVRYLEDA 198 Query: 249 ------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300 ++ F++N ++ + +AG+ H +R AT + Sbjct: 199 RPNLLKDETEQHVFLSNLGNPLSKRGIEYVMQKTFNQAGISGKVHPHELRHTFATAMLNN 258 Query: 301 GATAHELMATYGWKTVDQAETYTKG 325 GA + G ++ + YT Sbjct: 259 GADLRSVQELLGHSSLSATQIYTHV 283 >gi|298370045|ref|ZP_06981361.1| tyrosine recombinase XerC [Neisseria sp. oral taxon 014 str. F0314] gi|298281505|gb|EFI22994.1| tyrosine recombinase XerC [Neisseria sp. oral taxon 014 str. F0314] Length = 300 Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats. Identities = 47/296 (15%), Positives = 92/296 (31%), Gaps = 23/296 (7%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGVESRK 127 +Y + + ++ ++ Q+ R + + ++ Sbjct: 6 FYRYFDDYLTALRQEGKSAHTVEAYRRDLSQLERLLMLRPSENGADVRRGDFLAALKKLS 65 Query: 128 HTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 S + L+ R W V++ +A +P +++ PK + +E + + Sbjct: 66 QRNLSERSMARKLSVWRQYCGWLVQRGLMAADPTANLKAPKPPQRLPKAVQQEPLNHLLN 125 Query: 185 FWS----EGSQPRLAFEFLLYSGLRCSDSCRAG-VQHLQNNIFSIKTQKTGTIITVELPD 239 + R FE L SGLR S+ C L + + T K G V L Sbjct: 126 QGCGEDALALRDRAVFELLYGSGLRLSEVCGLNLHDVLPDEGWVGVTGKGGKQRRVPLVR 185 Query: 240 GFMKLLAMTPIGKETF------FINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGVRK 291 + L + F N + +++ Q + A + G + S H +R Sbjct: 186 KSIDALLDYLPHRVAAEGEAALFTNKNGRRLGQRQIQKRLQQWAAEQGSAQHLSPHMLRH 245 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI---KNSRRISSVVD 344 A+ A + G + + YTK D L + R + Sbjct: 246 SYASHLLQASRDIRAVQELLGHSNLSTTQIYTK-LDLEHLAAVYDEAHPRAKRKKE 300 >gi|253755988|ref|YP_003029128.1| phage integrase [Streptococcus suis BM407] gi|251818452|emb|CAZ56281.1| putative phage integrase [Streptococcus suis BM407] Length = 380 Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats. Identities = 48/365 (13%), Positives = 115/365 (31%), Gaps = 50/365 (13%) Query: 11 VTKERTRHGKIIYYFR--------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62 + + + + G I Y + G +R+R + S L + + + Sbjct: 2 INQYQLKDGSIRYSYIAYVGIDPLTGKEKRVRKRGFNTKKEAKIAESQLLLKVEQDGFFD 61 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122 P + T + + + + A I+ G KI+ + Sbjct: 62 KPDR--ITFEEVYKIWLEHYKNTVKASTYARQKAQADLHIVPVFGACYVDKISLPMCQKQ 119 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-------RKTEGIRPWT 175 + F+ +++ +AV Y+ NP + +P+ + + ++ Sbjct: 120 AQEWFKGYKKYANFIGMTKMVLDFAVNLGYIHDNPMKKIIKPRKSSEVDEEEKKKENFYS 179 Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLL--YSGLRCSDSCRAGVQHL---------------- 217 +ED+Q+F ++ + +A F L ++G+R S+ + L Sbjct: 180 REDLQKFLDCVAKEDKEEIACIFRLLAFTGMRKSEVLALRWKDLDLFTSRLSVSQIVAYG 239 Query: 218 -QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK------------M 264 N+I + + T+ L + +L ++ + Sbjct: 240 ENNSIVYQTPKTKKSKRTITLDPITVSILKKWEKTRQFLNFPQRVKPTDLVFPAETGNAH 299 Query: 265 NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TY 322 + + + K + + HG R ++ +AGA+ E+ G + + Y Sbjct: 300 SFDYINYNLRCILKKYDLPYITPHGFRHTHCSLLFEAGASIKEVQERLGHEDIKTTMNIY 359 Query: 323 TKGAD 327 + Sbjct: 360 AHVTE 364 >gi|311109403|ref|YP_003982256.1| tyrosine recombinase XerC [Achromobacter xylosoxidans A8] gi|310764092|gb|ADP19541.1| tyrosine recombinase XerC [Achromobacter xylosoxidans A8] Length = 331 Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats. Identities = 47/318 (14%), Positives = 90/318 (28%), Gaps = 41/318 (12%) Query: 55 TPKREYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIR--KSGDFDY 111 PK T L +S + + + ++ + + Sbjct: 1 MPKTTQAQDTAPPETPLPDAMSAWLRHLETNRRYSPHTLDGYRRELHFLRELADHAKLPL 60 Query: 112 RKITTKHIRSGVESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168 KI HIR V P S + L + R ++W +A NP V PK Sbjct: 61 DKIGNGHIRQFVARLHAQGRGPRSLARTLAAWRGFYQWWAPAIELAGNPVAGVRAPKAPR 120 Query: 169 EGIRPWTKEDMQQFKSF-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221 + + E Q + + E L SGLR S+ +++ ++ Sbjct: 121 GLPKALSVEQTQALLDRAPAQVATEPAALRDQAMLELLYSSGLRLSELVGLDLRYERSGN 180 Query: 222 FSIKTQ------------KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ------- 262 + + K G +V + ++ L + + Sbjct: 181 YESRGWLSLEEAEVIVLGKGGKRRSVPVGQAALEALRKWIAVRPQLTPFTAQPEDAAALF 240 Query: 263 ------KMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWK 314 +++ + A +AGV H +R A+ + + G Sbjct: 241 LGARGRRISPRVVQLQLARIAQQAGVPTHVHPHVLRHSFASHVLQSAQDLRAVQEMLGHA 300 Query: 315 TVDQAETYTKGADRIRLG 332 + + YT+ D L Sbjct: 301 NISTTQIYTR-LDFQHLA 317 >gi|229181836|ref|ZP_04309144.1| DNA integration/recombination/invertion protein [Bacillus cereus 172560W] gi|228601634|gb|EEK59147.1| DNA integration/recombination/invertion protein [Bacillus cereus 172560W] Length = 369 Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats. Identities = 49/366 (13%), Positives = 117/366 (31%), Gaps = 44/366 (12%) Query: 17 RHGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + G G+R + + T A + + + TL Sbjct: 7 KRGNKYCIVIDIGPDPETGKRRQKWFSGYKTKKEA-QADVAKKITELNEGTFIEPSKVTL 65 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 K ++ + + S+ ++ + ++ + +I G K+ HI+ ++ Sbjct: 66 KEYLNHWLE-IKSMSIQKSTFAGYRAFINQHVIPSIGMVALHKLNVMHIQKCYKTAIDKG 124 Query: 131 SSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + L ++ AV+Q ++ NP E PK++ I+ WT+E++++F S Sbjct: 125 ITNNSILLMHRILKSALNLAVKQNIISRNPADFAEIPKKEKTPIQTWTEEEVKKFLSHSQ 184 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--------------TGTII 233 E S+ + + + +G+R + Q + ++ + + Sbjct: 185 E-SRYHIGYLLAITTGMRLGEVLGLRWQDIDFEKHTVTINQTSGHDNKIKKTAKTNSSKR 243 Query: 234 TVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKAKATK 279 T+ +P+ + L + ++ + + + F F K Sbjct: 244 TIPVPNETIVALKKHKTLINKEKLRFGSAYLDQDLINCDEFGRIIKRAHFRKSFIRATHK 303 Query: 280 AGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSR 337 G+ H +R ATI G + G + Y+ + + + Sbjct: 304 VGIKEIKFHDLRHTHATILLKQGVNPKIISERLGHTDISMTLSVYSHVLPN--MQEEAVK 361 Query: 338 RISSVV 343 + Sbjct: 362 NFGKSI 367 >gi|182420240|ref|ZP_02951470.1| tyrosine recombinase [Clostridium butyricum 5521] gi|237666087|ref|ZP_04526075.1| tyrosine recombinase [Clostridium butyricum E4 str. BoNT E BL5262] gi|182375938|gb|EDT73529.1| tyrosine recombinase [Clostridium butyricum 5521] gi|237659034|gb|EEP56586.1| tyrosine recombinase [Clostridium butyricum E4 str. BoNT E BL5262] Length = 323 Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats. Identities = 44/288 (15%), Positives = 98/288 (34%), Gaps = 42/288 (14%) Query: 85 GSLAVNSRISFESYFDQIIRK-------------SGDFDYRKITTKHIRSGVE------- 124 + + + + R + + I + IRS Sbjct: 24 KGSSKKTLHVYTTDLILFFRFLKRDRNLVNIDIPFEEIEIYDINKEFIRSIDSSDIYSFL 83 Query: 125 -----SRKHTPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTKED 178 R ++ + + + ++ F++ + + + C ++ERPK K + + + Sbjct: 84 SYTEFERNNSNVTRRRKIACLKSFFRFLYLKLHMIDTDLCENLERPKAKPKLPVYLKENE 143 Query: 179 MQQFKSFWSEGS--QPRLAFEFLLYSGLRCSDSCRAGVQHL-----------QNNIFSIK 225 + + + + R + +GLR S+ C + + + Sbjct: 144 CVSLLNNITGRNIVRDRCIITLFINTGLRLSELCSINISSIKDDTLVVLGKGNKERYIYL 203 Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 + + + V L K + + ++ F++ KQ++N A ++K Sbjct: 204 NESCLSQLEVYLRYRSEKYIPIKEGHEDALFLSEQKQRINPRSVENIVVKAVKSACLDKH 263 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIR 330 SAH +R AT+ AGA + G ++V + YT D+IR Sbjct: 264 YSAHKLRHTCATLLYKAGADIRSIQTLLGHESVATTQIYTHVDVDQIR 311 >gi|116254087|ref|YP_769925.1| site-specific tyrosine recombinase XerD [Rhizobium leguminosarum bv. viciae 3841] gi|115258735|emb|CAK09841.1| putative tyrosine recombinase [Rhizobium leguminosarum bv. viciae 3841] Length = 317 Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats. Identities = 44/290 (15%), Positives = 86/290 (29%), Gaps = 35/290 (12%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRKH 128 + + + A N+ S+E D + + S + + Sbjct: 9 VESFLEMMSAERGAAANTLQSYERDLDDVRSFLTERSIRLTEAASTDLAAYLSSLARKGF 68 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 PSS + L +MR +K+ + A +P ++ PK+ + E++ + S Sbjct: 69 KPSSQARRLAAMRQFYKFLYAEGLRADDPTGILDAPKKGRPLPKTMGVEEVGRLLSRAEA 128 Query: 189 GSQP-----------RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVE 236 ++ E L +G+R S+ + L + K V Sbjct: 129 EAEDPAPGQLQRLRMLALLELLYATGMRVSELVSLPARVLDQEGRFLMIRGKGNKERLVP 188 Query: 237 LPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 L + L F + + + F+ K A +AG+ Sbjct: 189 LSQSAISALKSYGRLLAVENAAVKEPQESPWLFPSASKEGYLPRQVFARDLKNLAIRAGL 248 Query: 283 N---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 S H +R A+ GA + G + + YT + Sbjct: 249 TPSLISPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEER 298 >gi|325568652|ref|ZP_08144945.1| bacteriophage integrase [Enterococcus casseliflavus ATCC 12755] gi|325157690|gb|EGC69846.1| bacteriophage integrase [Enterococcus casseliflavus ATCC 12755] Length = 399 Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats. Identities = 46/371 (12%), Positives = 111/371 (29%), Gaps = 55/371 (14%) Query: 11 VTKERTRHGKIIYYFRK--------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62 + K + + G Y F+ G +R AL + + + Sbjct: 2 IKKYKKKDGSTAYMFQIYLGVDPLSGKKKRTTKRGFKTQQEAK---LALARLQLESKEPD 58 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRS 121 + T + + + + + ++ ++ + I+ G KIT + + Sbjct: 59 FITETTKTFEEVCNMWLEQYR-NTVKASTYTIQKVAIDKHILPLFGHIRMSKITIQFCQK 117 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT------EGIRPWT 175 V + +F +A+ + NP V RPK++ + Sbjct: 118 QVNHWFSYYKKYSNLIGITTSVFNYAINIRLLNNNPMDGVIRPKKQQKVDEEDYIAPFYD 177 Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLL--YSGLRCSDSCRAGVQHL---------------- 217 +E + F S E +L F + Y+GLR + + + Sbjct: 178 REQLLTFLSVVKENYSEQLFVMFRILGYTGLRKGELHALRWKDIDFDKKTLTVKQTLATV 237 Query: 218 -QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN---------------DK 261 + + +I T+ L + + L+ + ++ F + Sbjct: 238 QNWELVFQPPKTRKSIRTISLDNETLGLIKKWKLHQQKFLFQFGINSLSQEQLLFPSTEN 297 Query: 262 QKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320 + + + + + K + HG R ++ +AG + ++ G + Sbjct: 298 KPLYLDYLNHNLSKILKENRLPKMTVHGFRHTHCSLLFEAGVSIKDVQERMGHTDIKTTM 357 Query: 321 -TYTKGADRIR 330 Y ++ + Sbjct: 358 NIYAHVTEQRK 368 >gi|255004532|ref|ZP_05279333.1| integrase/recombinase ripx (xerC) [Anaplasma marginale str. Virginia] Length = 311 Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats. Identities = 31/272 (11%), Positives = 81/272 (29%), Gaps = 31/272 (11%) Query: 82 AHWGSLAVNSRISFESYFDQIIRKSGDFD---------YRKITTKHIRSGVESRKHTP-- 130 + N+ ++E R +++ + RS + R Sbjct: 18 REERRYSPNTVAAYERDIMDFYRSVCGEPCERSVSLQEVQELRSAEFRSWLADRFKQGKQ 77 Query: 131 -SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---- 185 +S + ++ +R F++ + + + + + P + + + M++ Sbjct: 78 SASNARAISVVRSFFRYLHHKCGMKSSVVFNTK-PIVRRSLPKVLEEPQMRKVMEEPEDL 136 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 + L GLR S++ L+ + K + + ++ Sbjct: 137 HWTHRRDLAVSALLYGCGLRISEAVNIKFCDLRQDELR-VLGKGSKERVIPILPWVRCII 195 Query: 246 AMTPIGKETFFINN-----------DKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKF 292 ++ +++ T F+ K + G+ ++ H +R Sbjct: 196 DEYVASCPHQRVHGASSTEYVFVGLRGGRLSRTYFAYRMKGLRRRIGLPETTTPHTLRHS 255 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324 AT GA + G ++ + YT Sbjct: 256 FATHLFLEGADIRVVQELLGHASLATTQVYTH 287 >gi|237736957|ref|ZP_04567438.1| integrase/recombinase [Fusobacterium mortiferum ATCC 9817] gi|229420819|gb|EEO35866.1| integrase/recombinase [Fusobacterium mortiferum ATCC 9817] Length = 292 Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats. Identities = 40/272 (14%), Positives = 87/272 (31%), Gaps = 24/272 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD-------FDYRKITTKHIRSGVESR 126 I ++ + + + N+ S + Q+ + + + ++ Sbjct: 13 IKDFLYFEEFGNNKSPNTIKSMKKDLFQLAEYLNEIEKVDNCMAIDSVMIRGFIINLQEN 72 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 T + + L+S+R FK+ VR++ + +P + P T+ T E++ + + Sbjct: 73 GITKRTINRKLSSLRSFFKYLVREKRINQSPVEVIASPSFYTQKPDILTLEEINKLREVI 132 Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242 S G + RL E L SG+ + G + + + V + Sbjct: 133 SLKNANGLRDRLILELLYSSGITSVEMLGVGEGVFDLDKRELYVSNGKSRRVVFFSERTR 192 Query: 243 KLLAMTPIGKETFFINNDKQ----------KMNATQFSIWFKAKATKAGVNK--SAHGVR 290 + K+ + +++ A KAG+ + S + R Sbjct: 193 EFFKRYIKAKKEKYKEKYNPDILFVNGSATRLSDRSLRRIIDRYAVKAGIEREISPYSFR 252 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETY 322 A G L G T++ + Y Sbjct: 253 HTFAVHMLSHGMDILYLKELMGHVTLESTKVY 284 >gi|51596109|ref|YP_070300.1| integrase [Yersinia pseudotuberculosis IP 32953] gi|51589391|emb|CAH21013.1| putative integrase [Yersinia pseudotuberculosis IP 32953] Length = 351 Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats. Identities = 46/354 (12%), Positives = 92/354 (25%), Gaps = 38/354 (10%) Query: 14 ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + +GK + Y +R+R + + L L Sbjct: 4 RKLPNGKWVCDFYSDGRDSKRVRKTFVTRGEAMRFEREQLAQRGDLDIDYTPAETAAQRL 63 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----- 126 K L+ ++ + H SL+ + + + GD + + R Sbjct: 64 KTLVGQWYE-LHGRSLSDG--KARLDKLNILCDNLGDPAVADFDREVFAKYRKQRLAGEF 120 Query: 127 ----------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 ++ + +R +F R + L R R++E + Sbjct: 121 SRKPKHGIVKPPKEATVNREHAYLRAVFNELKRLGHWNHANPLDGVRLFRESENELTFLY 180 Query: 177 EDMQQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233 ED + + S + + L +G R S++ + + N + K+ Sbjct: 181 EDDIKRLLHECDSSSNKDLGIIVRICLATGARWSEAEQLRQAQVMPNKITYINTKSKKNR 240 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFS 293 TV + KL+ F + H +R Sbjct: 241 TVPISAELHKLIPKMKGRLFANA---------YDAFGQAIDRAKLVLPTGQLTHVLRHTF 291 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347 A+ G L G T+ Y+ + S+ D Sbjct: 292 ASHFMMNGGNILVLQQILGHSTIQMTMRYSH------FAPDHLEAAVSLNPYDR 339 >gi|110639767|ref|YP_679977.1| integrase [Cytophaga hutchinsonii ATCC 33406] gi|110282448|gb|ABG60634.1| integrase [Cytophaga hutchinsonii ATCC 33406] Length = 293 Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats. Identities = 38/301 (12%), Positives = 96/301 (31%), Gaps = 38/301 (12%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---------GDFDYRKITTKHIRSGVE 124 ++E+ + + ++ +S+++ + +Y + + + + Sbjct: 2 VNEFLTYLSFEKRYSKHTTVSYKNDLSNLSDYLLITYELSTPEHANYPMLRSWIVTLVDQ 61 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-----RPWTKEDM 179 + P S + + +R + + ++E++ +P L + K K T Sbjct: 62 ELE--PKSINRKIACLRSYYHFLQKKEFITKDPTLKIRALKVKKSLPVFVAEENITDLLD 119 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-----TQKTGTIIT 234 + + EG + +L E L +G+R S+ + +IK ++ I Sbjct: 120 KFEFADSFEGLRDKLVLELLYGTGIRLSELIGLKNADVNMFQKTIKVLGKGNKERIIPIH 179 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-------KSAH 287 + N Q F + + ++ +S H Sbjct: 180 DTFITLAKAYTIKKKSESFSNNTEFFVVTNNGEQVYPMFIYRLVRMYLDQVTTVDKRSPH 239 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347 +R AT + GA + + G ++ + YT + ++ ++ D Sbjct: 240 VLRHTFATHLLNKGADLNAIKDLLGHTSLAATQVYTH---------NSIDKLKAIFDQAH 290 Query: 348 P 348 P Sbjct: 291 P 291 >gi|116254158|ref|YP_769996.1| site-specific tyrosine recombinase XerC [Rhizobium leguminosarum bv. viciae 3841] gi|115258806|emb|CAK09912.1| putative tyrosine recombinase [Rhizobium leguminosarum bv. viciae 3841] Length = 299 Score = 116 bits (290), Expect = 6e-24, Method: Composition-based stats. Identities = 46/284 (16%), Positives = 91/284 (32%), Gaps = 30/284 (10%) Query: 77 EYRKS-AHWGSLAVNSRISFESYFDQIIRKS-GD-------FDYRKITTKHIRSGVESRK 127 + ++ A L+ ++ ++E Q + G D R++ R+ + +R+ Sbjct: 6 AWLENLARERRLSEHTLDAYERDTRQFLTFLTGHLAGPATLRDIRELRPADFRAFLAARR 65 Query: 128 HTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ---- 180 S A + L +R L + ++ V +V PK+ +P + Sbjct: 66 KQGSGARSLGRNLAGLRSLLRHLEKKGLVNAAGAAAVRSPKQPKSLPKPLSDTQAITVVS 125 Query: 181 ---QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------ 231 Q ++ L GLR S++ LQ +++ G Sbjct: 126 DEAQLHDEPWIAARDAAVMTLLYGCGLRISEALDLTPADLQKGATTLRITGKGNKTRLVP 185 Query: 232 --IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAH 287 + + + + L E F K+ A + + G+ + H Sbjct: 186 LLSVVFDAVEKYRALCPYHLESGEPLFRGARGGKLQAAIIQRTMQKMRSAFGLPETATPH 245 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +R AT G + G ++ + YT G D RL Sbjct: 246 ALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYT-GVDASRL 288 >gi|325269556|ref|ZP_08136172.1| site-specific tyrosine recombinase XerC [Prevotella multiformis DSM 16608] gi|324988175|gb|EGC20142.1| site-specific tyrosine recombinase XerC [Prevotella multiformis DSM 16608] Length = 297 Score = 116 bits (290), Expect = 6e-24, Method: Composition-based stats. Identities = 39/275 (14%), Positives = 91/275 (33%), Gaps = 24/275 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVESRKHT 129 + + + + + S+ ++ R D + + + +R+ +E Sbjct: 7 VDMFLDYLRLERNYSPMTVTSYRKDLEEFERFFQDLEEQLSWETVDSDVVRNWMEDMMDR 66 Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ----- 181 SS + L+S+R +++A+R+ V +P ++ PKR+ + + +M++ Sbjct: 67 GNAASSVNRRLSSLRSFYRFALRRSLVRRDPVHGLQGPKRQKPLPQFLKESEMERLLEPG 126 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDG 240 + + R +G+R S+ + + T K + Sbjct: 127 MWTDSYKDVLARTLIMTFYETGVRVSELTGLDDKDVDGLTCELKVTGKRDKQRIIPFGRE 186 Query: 241 FMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGVR 290 + LA + F +M Q K ++ ++ H +R Sbjct: 187 LAETLAAYRQVRGAAVKGDSAALFRTEKGVRMTDGQVRALVKKHLSRVSTLKKRTPHVLR 246 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 AT + A + G +++ E YT Sbjct: 247 HTFATAMLNHEAGLESVKKLLGHESLSTTEIYTHT 281 >gi|300924591|ref|ZP_07140553.1| site-specific recombinase, phage integrase family [Escherichia coli MS 182-1] gi|300419222|gb|EFK02533.1| site-specific recombinase, phage integrase family [Escherichia coli MS 182-1] Length = 334 Score = 116 bits (290), Expect = 6e-24, Method: Composition-based stats. Identities = 46/314 (14%), Positives = 94/314 (29%), Gaps = 10/314 (3%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 ++ G+ + R + R+ + + + ++ + TL Sbjct: 4 KKLEDGRYLLDIRPNGRKGKRVRKVFDKKSVAVATERYIMANAEKREYIQGYRDRRTLND 63 Query: 74 LIS-EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132 L+ + A R + +++ D K+ RS + PSS Sbjct: 64 LLELWWMYHGQHRRKAEEDRKQLCNIINELGADMQAVDLDKLKIIAWRSQKIAAGLKPSS 123 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 A +++ + +F R + + + + EG Sbjct: 124 ANRYMNRLSGMFTVLKRIGLWDAEHPVRGISILYVSPREMAFLSQKEVALLLDTLEGDYW 183 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252 R+A L +G R S++C+ + + +N + K G TV + + + G Sbjct: 184 RVALLC-LSTGARWSEACKLRGEQIVHNRVTFLETKNGRKRTVPISQAVCEAIKTRETGG 242 Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYG 312 +F + K ++AH +R A+ G L G Sbjct: 243 LFEVK--------YREFCLALKRVKPDLPKGQAAHVLRHTFASHFVMNGGNIIALQKILG 294 Query: 313 WKTVDQAETYTKGA 326 T+ Q Y A Sbjct: 295 HATIQQTMAYAHFA 308 >gi|126726516|ref|ZP_01742357.1| tyrosine recombinase XerD [Rhodobacterales bacterium HTCC2150] gi|126704379|gb|EBA03471.1| tyrosine recombinase XerD [Rhodobacterales bacterium HTCC2150] Length = 312 Score = 116 bits (290), Expect = 6e-24, Method: Composition-based stats. Identities = 43/289 (14%), Positives = 100/289 (34%), Gaps = 33/289 (11%) Query: 74 LISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSG---VESRK 127 IS + ++ + N+ +++ D++ + + I +++ Sbjct: 11 WISTFLEAQSAELDASENTLLAYARDLKDFQDWIARQKLDFQTTSREDIEKYLINCDAQG 70 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---- 183 S+ + L++++ LF++A NP L ++ P R + +++++ + Sbjct: 71 LAKSTRARRLSAVKQLFRFAYEDGRRDDNPALQIKGPGRDKRLPKTLSEDEVDRLLASAS 130 Query: 184 ---SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD 239 S+ ++ + L +G+R ++ V + + I K G V L Sbjct: 131 SLGRKDSDRARNTCMMQLLYATGMRVTELVSLPVSAARGDPRMILVMGKGGKERLVPLSP 190 Query: 240 GFMKLLAMTPIGKETFFINNDKQ----------------KMNATQFSIWFKAKATKAGVN 283 + A ++ +K+ + +F + K + +AGV+ Sbjct: 191 PAREATATWLNIRDATQKLAEKKGAAPSRFLFPSSGKLGHITRHRFYLLIKEISVQAGVD 250 Query: 284 ---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + H +R AT GA + G + E YT D Sbjct: 251 PSKVTPHTMRHAFATHLLARGADLRSIQTLLGHADISTTEIYTHVLDER 299 >gi|86157887|ref|YP_464672.1| Phage integrase [Anaeromyxobacter dehalogenans 2CP-C] gi|85774398|gb|ABC81235.1| Phage integrase [Anaeromyxobacter dehalogenans 2CP-C] Length = 387 Score = 116 bits (290), Expect = 6e-24, Method: Composition-based stats. Identities = 47/367 (12%), Positives = 103/367 (28%), Gaps = 37/367 (10%) Query: 13 KERTRHGKIIY----YFRKGHGRRIRLP-------YPHESTFIPAYMSALTGSTPKREYI 61 ++ ++GK + G R+R + A + + P R+ Sbjct: 5 RKWKKNGKEGWEVDIRVTMPDGTRMRERVKSPVTSKSGTLKWAQARETEILVRGPARKEE 64 Query: 62 NSPRKKPTTLKWLISEYRKSAHWGSL-AVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 K+ TL ++ + + +++ + ES F + D IT + ++ Sbjct: 65 EPEAKEVPTLAQFWPDFVEGYVNANRGKFSAQRARESIFKHHLAPWHDLPLSAITDEEVQ 124 Query: 121 SGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + + + L + V+ K AV + + PC K + + + Sbjct: 125 KLKGRLANRSAKTTNNVLVCLSVILKTAVEWKRLPALPCRIRLVKVPKNVKPDFYDEGQL 184 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-------IFSIKTQKTGTI 232 Q + SE + + +GLR ++ + + T Sbjct: 185 AQLVAAASENTGDLVTVLLGADAGLRRGETIGLEWPDIDFQAGTLTVRRAVYRGVVGTTK 244 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA------ 286 E + L + + + AG+ Sbjct: 245 GNAERVVPLTERLRDALLAHRHLAGRRVLTGATDESIRSVMERLSRHAGLPAGTRMKRGK 304 Query: 287 ---------HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 H +R T A AG + A G +++ Y + R ++ R Sbjct: 305 EVPRWAGLYHKLRHTFCTRLAMAGVPPRTIQALAGHVSIETTMRYMHVS--ARAPVEAIR 362 Query: 338 RISSVVD 344 + + Sbjct: 363 ALDAARG 369 >gi|296447748|ref|ZP_06889663.1| tyrosine recombinase XerD [Methylosinus trichosporium OB3b] gi|296254725|gb|EFH01837.1| tyrosine recombinase XerD [Methylosinus trichosporium OB3b] Length = 314 Score = 116 bits (290), Expect = 6e-24, Method: Composition-based stats. Identities = 47/296 (15%), Positives = 93/296 (31%), Gaps = 37/296 (12%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVE---SR 126 LI + A N+ ++ + + G +TT +R+ + SR Sbjct: 9 LIGAFLDMLAAERGAARNTLDAYRRDLEDYVAHLERTGAEPL-GVTTDGLRAYLATLQSR 67 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 T +++ + L+++R K+ Y A +P +E P+R+ +++++ Sbjct: 68 GMTAATSARRLSALRQFHKFLYVDRYRADDPSTPLEGPRRQHSAPDILAMDEVERLLETA 127 Query: 187 SEGS--------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGT 231 EG + E L +GLR S+ ++ F K Sbjct: 128 REGLEDESRAAGERLRAARLYALLETLYATGLRVSELVSLPASAARSRDSFFTVRGKGSK 187 Query: 232 IITVELPDGFMKLLAMTP-----------IGKETFFINNDKQKMNATQFSIWFKAKATKA 280 + L + F + + + F+ K A A Sbjct: 188 ERLAPMTPRAKAALTVFRALLAKHAPGLADSHFLFPSDAAEGHLTRQAFARDLKTAAAAA 247 Query: 281 GV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 G+ + S H +R A+ GA + G + + YT D + Sbjct: 248 GLSARDISPHALRHAFASHLLQNGADLRVVQELLGHADISTTQIYTHVLDERIRAM 303 >gi|253752228|ref|YP_003025369.1| putative phage integrase [Streptococcus suis SC84] gi|253754054|ref|YP_003027195.1| phage integrase [Streptococcus suis P1/7] gi|251816517|emb|CAZ52153.1| putative phage integrase [Streptococcus suis SC84] gi|251820300|emb|CAR46803.1| putative phage integrase [Streptococcus suis P1/7] gi|292558819|gb|ADE31820.1| integrase [Streptococcus suis GZ1] gi|319758617|gb|ADV70559.1| putative phage integrase [Streptococcus suis JS14] Length = 380 Score = 116 bits (290), Expect = 6e-24, Method: Composition-based stats. Identities = 48/365 (13%), Positives = 114/365 (31%), Gaps = 50/365 (13%) Query: 11 VTKERTRHGKIIYYFR--------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62 + + + + G I Y + G +R+R S L + + + Sbjct: 2 INQYQLKDGSIRYSYIAYVGIDPLTGKEKRVRKRGFKTKKEAKIAESQLLLKVEQDGFFD 61 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122 P + T + + + + A I+ G KI+ + Sbjct: 62 KPDR--ITFEEVYKIWLEHYKNTVKASTYARQKAQADLHIVPVFGACYVDKISLPMCQKQ 119 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-------RKTEGIRPWT 175 + F+ +++ +AV Y+ NP + +P+ + + ++ Sbjct: 120 AQEWFKGYKKYANFIGMTKMVLDFAVNLGYIHDNPMKKIIKPRKSSEVDEEEKKKENFYS 179 Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLL--YSGLRCSDSCRAGVQHL---------------- 217 +ED+Q+F ++ + +A F L ++G+R S+ + L Sbjct: 180 REDLQKFLDCVAKEDKEEIACIFRLLAFTGMRKSEVLALRWKDLDLFTSRLSVSQIVAYG 239 Query: 218 -QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK------------M 264 N+I + + T+ L + +L ++ + Sbjct: 240 ENNSIVYQTPKTKKSKRTITLDPITVSILKKWEKTRQFLNFPQRVKPTDLVFPAETGNAH 299 Query: 265 NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TY 322 + + + K + + HG R ++ +AGA+ E+ G + + Y Sbjct: 300 SFDYINYNLRCILKKYDLPYITPHGFRHTHCSLLFEAGASIKEVQERLGHEDIKTTMNIY 359 Query: 323 TKGAD 327 + Sbjct: 360 AHVTE 364 >gi|229122156|ref|ZP_04251371.1| DNA integration/recombination/invertion protein [Bacillus cereus 95/8201] gi|228661282|gb|EEL16907.1| DNA integration/recombination/invertion protein [Bacillus cereus 95/8201] Length = 369 Score = 116 bits (290), Expect = 6e-24, Method: Composition-based stats. Identities = 49/366 (13%), Positives = 114/366 (31%), Gaps = 44/366 (12%) Query: 17 RHGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + G G+R + + T A + + + TL Sbjct: 7 KRGNKYCIVIDIGPDPETGKRRQKWFSGYKTKKEA-QADVAKKITELNEGTFIEPSKVTL 65 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 + ++ + + S+ ++ + + ++ + +I G K+ HI+ ++ Sbjct: 66 EDYLNHWLE-IKSMSIERSTFVGYRAFINQHVIPSIGMVALHKLNVMHIQKCYKTAIDRG 124 Query: 131 SSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + L ++ AV+Q ++ NP E PK++ I+ WT+E++++F Sbjct: 125 IANNSVLLMHRILKSALNLAVKQNIISRNPADFAEIPKKERTSIQTWTEEEVKKFLLHSQ 184 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--------------TGTII 233 E S+ + + + +G+R + Q + ++ + + Sbjct: 185 E-SRYHIGYLLAITTGMRMGEVLGLRWQDVDFEKHTVTINQTSGHDNKIKKTAKTNSSKR 243 Query: 234 TVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKAKATK 279 T+ +P ++ L + N + F F Sbjct: 244 TIPVPKETIESLKKHKVLINQEKLRLGSAYQDFDLINCNEFGMIIKKANFRKNFIRAIHN 303 Query: 280 AGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSR 337 AGV H +R ATI G + G + Y+ + + + Sbjct: 304 AGVKEIKFHDLRHTHATILLKQGVNPKIISERLGHTDISMTLSVYSHVLPN--MQEEAVK 361 Query: 338 RISSVV 343 + Sbjct: 362 NFGKSI 367 >gi|23501849|ref|NP_697976.1| phage integrase family site specific recombinase [Brucella suis 1330] gi|62289895|ref|YP_221688.1| phage integrase family site specific recombinase [Brucella abortus bv. 1 str. 9-941] gi|82699825|ref|YP_414399.1| phage integrase [Brucella melitensis biovar Abortus 2308] gi|161618919|ref|YP_001592806.1| hypothetical protein BCAN_A0980 [Brucella canis ATCC 23365] gi|163843233|ref|YP_001627637.1| hypothetical protein BSUIS_A1008 [Brucella suis ATCC 23445] gi|189024139|ref|YP_001934907.1| Phage integrase [Brucella abortus S19] gi|225627444|ref|ZP_03785481.1| phage integrase family site specific recombinase [Brucella ceti str. Cudo] gi|237815396|ref|ZP_04594394.1| phage integrase family site specific recombinase [Brucella abortus str. 2308 A] gi|254697338|ref|ZP_05159166.1| Phage integrase [Brucella abortus bv. 2 str. 86/8/59] gi|254706834|ref|ZP_05168662.1| Phage integrase [Brucella pinnipedialis M163/99/10] gi|254730236|ref|ZP_05188814.1| Phage integrase [Brucella abortus bv. 4 str. 292] gi|256061062|ref|ZP_05451218.1| Phage integrase [Brucella neotomae 5K33] gi|256159686|ref|ZP_05457439.1| Phage integrase [Brucella ceti M490/95/1] gi|256254954|ref|ZP_05460490.1| Phage integrase [Brucella ceti B1/94] gi|260168683|ref|ZP_05755494.1| Phage integrase [Brucella sp. F5/99] gi|260545355|ref|ZP_05821096.1| phage integrase [Brucella abortus NCTC 8038] gi|260566487|ref|ZP_05836957.1| phage integrase [Brucella suis bv. 4 str. 40] gi|260757928|ref|ZP_05870276.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292] gi|260761751|ref|ZP_05874094.1| conserved hypothetical protein [Brucella abortus bv. 2 str. 86/8/59] gi|261222140|ref|ZP_05936421.1| conserved hypothetical protein [Brucella ceti B1/94] gi|261314300|ref|ZP_05953497.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] gi|261325065|ref|ZP_05964262.1| conserved hypothetical protein [Brucella neotomae 5K33] gi|261758160|ref|ZP_06001869.1| phage integrase [Brucella sp. F5/99] gi|265998104|ref|ZP_06110661.1| conserved hypothetical protein [Brucella ceti M490/95/1] gi|23347786|gb|AAN29891.1| site-specific recombinase, phage integrase family [Brucella suis 1330] gi|62196027|gb|AAX74327.1| site-specific recombinase, phage integrase family [Brucella abortus bv. 1 str. 9-941] gi|82615926|emb|CAJ10939.1| Phage integrase [Brucella melitensis biovar Abortus 2308] gi|161335730|gb|ABX62035.1| Hypothetical protein BCAN_A0980 [Brucella canis ATCC 23365] gi|163673956|gb|ABY38067.1| Hypothetical protein BSUIS_A1008 [Brucella suis ATCC 23445] gi|189019711|gb|ACD72433.1| Phage integrase [Brucella abortus S19] gi|225617449|gb|EEH14494.1| phage integrase family site specific recombinase [Brucella ceti str. Cudo] gi|237790233|gb|EEP64443.1| phage integrase family site specific recombinase [Brucella abortus str. 2308 A] gi|260096762|gb|EEW80637.1| phage integrase [Brucella abortus NCTC 8038] gi|260156005|gb|EEW91085.1| phage integrase [Brucella suis bv. 4 str. 40] gi|260668246|gb|EEX55186.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292] gi|260672183|gb|EEX59004.1| conserved hypothetical protein [Brucella abortus bv. 2 str. 86/8/59] gi|260920724|gb|EEX87377.1| conserved hypothetical protein [Brucella ceti B1/94] gi|261301045|gb|EEY04542.1| conserved hypothetical protein [Brucella neotomae 5K33] gi|261303326|gb|EEY06823.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] gi|261738144|gb|EEY26140.1| phage integrase [Brucella sp. F5/99] gi|262552572|gb|EEZ08562.1| conserved hypothetical protein [Brucella ceti M490/95/1] Length = 341 Score = 116 bits (290), Expect = 6e-24, Method: Composition-based stats. Identities = 58/333 (17%), Positives = 113/333 (33%), Gaps = 25/333 (7%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 + G+ YY G +R P + F+ + A + + + Sbjct: 11 KVNAKGRTYYYA-WRGGPALR-GEPGSAEFMASLQEA---------NDSRVIPDASKFRA 59 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVESRKH 128 +I+ Y+ S + LA +++ ++ + D+I +K GD + IR Sbjct: 60 VITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSIAQFDLPQKIRPVIRKWRGEFAD 119 Query: 129 TPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 P +A + + + +AV ++ NPC +++ + WT +D+ + K+ Sbjct: 120 KPRTADYGMQVLSRVLSYAVDPLGKISQNPCEGIKQLYKNDRAAIIWTDQDIARLKTKC- 178 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLL 245 + A + ++GLR D R H+ +N + + + L LL Sbjct: 179 -SPEVAWAVDLAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRHTKEAVIPLYAELRALL 237 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGA 302 P N K F F +A + + H R +AT AG Sbjct: 238 QTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLHFHDFRGTAATKFYIAGL 297 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 + + GW+ + R I+ Sbjct: 298 SERVIAEIMGWEEETVRNIIRRYVSR-TAAIEA 329 >gi|294776711|ref|ZP_06742176.1| integron integrase [Bacteroides vulgatus PC510] gi|294449455|gb|EFG17990.1| integron integrase [Bacteroides vulgatus PC510] Length = 376 Score = 116 bits (290), Expect = 6e-24, Method: Composition-based stats. Identities = 43/261 (16%), Positives = 88/261 (33%), Gaps = 15/261 (5%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSA 133 Y ++ + ++ ++ +YF + + + R I + I + + ++R + Sbjct: 98 YAETLRQLRYSEHTVRAYTTYFKEFQQYFAGRNLRYIRPEEINAYIVHLIDTRGISSCQQ 157 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193 + S++ F + C V+R KR+ +KE+++ + Sbjct: 158 NLRINSIKFYF----EKVLGLERKCYEVKRAKRERTLPDVLSKEEIKSILDATGPDIRLF 213 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMT--- 248 F L +GLR S+ + + ++ K L ++ L Sbjct: 214 CMFSLLYSAGLRISELLDLKPHDINVSRSLIRVRQGKGRKDRYTLLSKPLVRKLTEYAKL 273 Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHE 306 +E F + + S K A +AG+ K H +R AT + G Sbjct: 274 YKPQEWLFERYKGEPFTESIVSKKLKEAAKEAGITKRVYPHLLRHSFATHLIEQGTDLKI 333 Query: 307 LMATYGWKTVDQAETYTKGAD 327 + G + E Y AD Sbjct: 334 VKELLGHNQLKTTEMYVHIAD 354 >gi|255534753|ref|YP_003095124.1| Probable integrase [Flavobacteriaceae bacterium 3519-10] gi|255340949|gb|ACU07062.1| Probable integrase [Flavobacteriaceae bacterium 3519-10] Length = 356 Score = 116 bits (290), Expect = 6e-24, Method: Composition-based stats. Identities = 37/267 (13%), Positives = 93/267 (34%), Gaps = 16/267 (5%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS----GVESRKHTP 130 +++ + ++ ++ F Q++ +++ + +R+ E+ K + Sbjct: 85 FKRFQEHLVLKGYSQSTLRTYSIEFAQLLYVLKGHPVNELSPERLRAYFLYCHENLKLSE 144 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 S + +++ F Q + RPK+K + + +K ++++ E Sbjct: 145 SEIHSRINAVKFYF----EQVLHRHKMFFDIPRPKKKQQLPKMLSKAEIKKIILSV-ENP 199 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLLAMT 248 + + + GLR S+ + + ++ ++ LP+ + L Sbjct: 200 KHLMILKVCYGMGLRVSEVVALKLTDIDGAGKRVRIEQAKGKKDRITVLPESLLPELRAY 259 Query: 249 PIGKETFFINNDKQK---MNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303 + + Q + FK KAG+++ HG+R AT + G Sbjct: 260 YLAYRPKTFLFEGQHGGQYSVRSAQAVFKKAVEKAGIHRKLGIHGLRHSFATHLLETGTD 319 Query: 304 AHELMATYGWKTVDQAETYTKGADRIR 330 + G ++ + YT D + Sbjct: 320 IRFIQELLGHNSIKTTQIYTHVTDIAK 346 >gi|257870780|ref|ZP_05650433.1| phage integrase [Enterococcus gallinarum EG2] gi|257804944|gb|EEV33766.1| phage integrase [Enterococcus gallinarum EG2] Length = 380 Score = 116 bits (290), Expect = 6e-24, Method: Composition-based stats. Identities = 56/361 (15%), Positives = 116/361 (32%), Gaps = 48/361 (13%) Query: 14 ERTRHGKIIYYF------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67 + ++G+ + F G+ IR + A AL + + Sbjct: 7 YKLQNGEKYWGFETYLGKDPKTGKDIRTKRRRFKSKAEA-QIALNRLLVDFKEKQEFKIN 65 Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR 126 TT + L + + + +S + + I+ G+ KI+ + + V Sbjct: 66 VTTFQELYELWIDNYRTR-VKPSSVAVAQRFCKNHILPAFGELRLDKISVSYCQKQVNEW 124 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT--EGIRPWTKEDMQQFKS 184 T + +FK+ V E NP P++ + ++ +TK+ +Q F Sbjct: 125 HKTLKQYGFLRKTTAQIFKFGVAMEVCKDNPMSKTLLPRKIEEEQPLKFYTKDQLQLFLK 184 Query: 185 FWSEGSQPRLAFEFLL--YSGLRCSDSCRAGVQHLQNNIFS-----------------IK 225 E + +L F L Y+G+R S++ + + + Sbjct: 185 NTKENNSVKLYTFFRLLAYTGMRKSEALGLQWEDIDYFNKTITIGKTIAQDEFNQVVLQV 244 Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF---------------S 270 + + T++L D +K L + + I + QF + Sbjct: 245 PKTKNSSRTIQLDDFTLKQLRIWQQEQMKIMILYGYNTNSPKQFLFTTNTNKLYYPQVVN 304 Query: 271 IWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGAD 327 W K + + HG R ++ ++GA+ E+ G K + Y Sbjct: 305 DWLDWIYKKTPMEPQITPHGFRHTHCSLLFESGASIKEVQERLGHKDIKTTMNIYAHVTP 364 Query: 328 R 328 + Sbjct: 365 Q 365 >gi|84496359|ref|ZP_00995213.1| tyrosine recombinase [Janibacter sp. HTCC2649] gi|84383127|gb|EAP99008.1| tyrosine recombinase [Janibacter sp. HTCC2649] Length = 299 Score = 116 bits (290), Expect = 6e-24, Method: Composition-based stats. Identities = 45/277 (16%), Positives = 96/277 (34%), Gaps = 31/277 (11%) Query: 78 YRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHT---- 129 + L+ N+ ++ + G D K+T +H+ + + Sbjct: 4 WLTHLDVERGLSANTLKAYRRDLGRWTAYLSVVGIDDPAKVTERHVSEFLARLREGDEDH 63 Query: 130 ----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 +SA + L S+R L K+ + V +P +V P + + + ++++ + Sbjct: 64 PALAANSAARTLVSVRGLHKFLALEGEVDADPAAAVSPPPPPSRLPKAISVSEVERLLNA 123 Query: 186 WSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239 + G + + E L +G R S++ + + + ++ K G V L Sbjct: 124 AAVGDTPASLRDKALLELLYGTGARISEAVGLDIDDVDMDAGIVRLEGKGGKQRLVPLGS 183 Query: 240 GFMKLLAMTPIG-----------KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 L + F+N +++ +A A +A + + S Sbjct: 184 YARTALTAYLVRGRGTFSTKGKGTPAIFLNQRGSRLSRQSAWSILRAAAARADLSGHLSP 243 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 H +R AT + GA + G +V + YT Sbjct: 244 HTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYT 280 >gi|289664010|ref|ZP_06485591.1| site-specific tyrosine recombinase XerC [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 305 Score = 116 bits (290), Expect = 6e-24, Method: Composition-based stats. Identities = 41/286 (14%), Positives = 92/286 (32%), Gaps = 29/286 (10%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD-------------FDYRKITTKHIR 120 + E+ ++ ++ ++ ++ + + D ++ + H+R Sbjct: 4 VDEFLSYLQVERQVSAHTLDAYRRDLAALVAWTAEHNTEDGAQQTATPLDTAQLDSAHLR 63 Query: 121 SGVE---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 V R +P S + L++ R + W ++ +A +P ++ PK + + + Sbjct: 64 QFVAAEHRRGLSPKSLQRRLSACRSYYAWLLKHGRIASSPAAAMRAPKSPRKLPQVLDAD 123 Query: 178 DMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTII 233 + + G + R E SGLR S+ C + L + + K Sbjct: 124 EAVRLVEVPTDAPLGLRDRALLELFYSSGLRLSELCALRWRDLDLDSGLVMVLGKGSKQR 183 Query: 234 TVELPDGFMKLLAMTPIG-----KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 V + + L F ++ I K A + G+ + Sbjct: 184 LVPVGSHAIAALREWLRDSGASADTHVFPGRAGGAISQRAVQIRIKQLAVRQGMFKDVHP 243 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R A+ ++ + G + + YT D L Sbjct: 244 HMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTH-LDFQHLA 288 >gi|260433976|ref|ZP_05787947.1| tyrosine recombinase XerD [Silicibacter lacuscaerulensis ITI-1157] gi|260417804|gb|EEX11063.1| tyrosine recombinase XerD [Silicibacter lacuscaerulensis ITI-1157] Length = 316 Score = 116 bits (290), Expect = 6e-24, Method: Composition-based stats. Identities = 41/289 (14%), Positives = 92/289 (31%), Gaps = 33/289 (11%) Query: 74 LISEYRKSAHWG-SLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSG---VESRK 127 IS + ++ A N+ +++ + + I + +++ Sbjct: 10 WISAFLEAQAAELGAATNTLLAYGRDLKDFAGWLSRHGAGFAQADQARIEAYLIDCDAQG 69 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + ++ + L++++ L+++A + + NP + ++ P R+ + ++ + Sbjct: 70 LSRATRARRLSAIKQLYRFAFEEGWRDTNPAIQIKGPGRQKRLPKTLDVAEVDRLLQAAR 129 Query: 188 EGSQPRL-------AFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD 239 + + + E L +G+R ++ V + + + K G V L Sbjct: 130 QTGRTQADRLRNTCLMELLYATGMRVTELVSLPVSAARGDPRMLLVLGKGGKERMVPLSP 189 Query: 240 GFMKLLAMT----------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV- 282 LA + F + +F + K A GV Sbjct: 190 PARDALAAWLGARDAVEEASVAKGGQRSRFLFPSRGKSGHLTRHRFFLLVKELAVCGGVS 249 Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + H +R AT GA + G V E YT D Sbjct: 250 PEKVTPHTLRHAFATHLLANGADLRSIQTLLGHADVATTEIYTHVLDER 298 >gi|237718824|ref|ZP_04549305.1| site-specific recombinase [Bacteroides sp. 2_2_4] gi|229451956|gb|EEO57747.1| site-specific recombinase [Bacteroides sp. 2_2_4] Length = 393 Score = 116 bits (290), Expect = 6e-24, Method: Composition-based stats. Identities = 55/368 (14%), Positives = 120/368 (32%), Gaps = 40/368 (10%) Query: 4 SLRLPPFVTKERTRHGKIIYY---FRKGHGRRIRLPYPHESTFIPA-------------- 46 L+ P + +++ G I Y ++ G ++ L A Sbjct: 9 RLKEPVRIREKKIAGGNISLYLDIYQNGLRKKETLKLYLVPEINAATKLQNANTRKLAEQ 68 Query: 47 --YMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS-AHWGSLAVNSRISFESYFDQII 103 L + +K TL + ++ K A ++ ++ + + DQ + Sbjct: 69 IKAQRILDIQREGLVDWDKVKKSRMTLTKWMDDFVKYNAELSESSMKTKRNTHARIDQYL 128 Query: 104 RKSGD--FDYRKITTKHIR----------SGVESRKHTPSSAIQFLTSMRVLFKWAVRQE 151 G F + + + + ++ + ++ F+ A+R Sbjct: 129 LYIGKPEFLLKDVDKEFCKGFITFLKTCTYNDGKKQLSTTTCRMFVNYFGSSLAKAIRDG 188 Query: 152 YVAINPC---LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208 + NP + E+P+++ T E++++ + + AF F ++GLR SD Sbjct: 189 LIEQNPFLLLEAKEKPQKRVAEREFLTIEEIKKVMNTPCRYELVKKAFLFSCFTGLRYSD 248 Query: 209 SCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF---MKLLAMTPIGKETFFINNDKQKMN 265 + + + + P +E + Sbjct: 249 MKTLNWSEIHKAADGKTEYIDHIQVKTKDRVTIPLSEETKKWMPKREEGIDNIFHNLTIT 308 Query: 266 ATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 +T + K AG++K H R +AT+ GA+ + + G K++ E Y Sbjct: 309 STTVEVVLKEWMEVAGISKHITYHCSRHTAATMFLTLGASIYVVSKILGHKSIKMTEIYA 368 Query: 324 KGADRIRL 331 K D+ +L Sbjct: 369 KIVDKKKL 376 >gi|228932649|ref|ZP_04095524.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228827021|gb|EEM72780.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 369 Score = 116 bits (290), Expect = 6e-24, Method: Composition-based stats. Identities = 51/368 (13%), Positives = 115/368 (31%), Gaps = 43/368 (11%) Query: 15 RTRHGKIIYYF---RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + G YY K +G+R + T A + + Sbjct: 5 VKKDGNSWYYVLELGKVNGKRRQKKKRGFKTKREAQNALTEVEHALLKDGTFSEPSKMLY 64 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH-- 128 K ++ + + + ++ ++ II G+ + KI I+ + Sbjct: 65 KEYLNSWLEDKRIL-IKESTFKTYSWLINKYIIPNLGNIELSKIRPIDIQKLYNEIINNN 123 Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + + + + + K A R + N V+RPK ++ W +++ F Sbjct: 124 LLSRENVQKIHSLINDSLKKAERWGLIKCNVASLVDRPKAYKSELKVWDIGEVKSFLKVA 183 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------------- 231 E S+ +AF L +G+R + + + N ++ ++T Sbjct: 184 -ESSRYYIAFLLALTTGMRQGEILALRWKDIDFNNNTLSIKQTLNHAGNKIIAGAKTKSG 242 Query: 232 IITVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKAKA 277 ++ LP+ + L + N F + Sbjct: 243 QRSIALPNETINFLVKHKETIDNEKRVAGILYTHHDLVVCTNIGTPCLPRNLLRSFYSLI 302 Query: 278 TKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKN 335 K + K H +R AT+ G + G + +TY+ ++L + Sbjct: 303 EKIDITKIRFHDLRHTHATLLLKEGVHPKVVAERLGHSNIRVTLDTYSHVLPSMQL--ET 360 Query: 336 SRRISSVV 343 + +I++++ Sbjct: 361 ANKINNLL 368 >gi|218442243|ref|YP_002380571.1| integrase [Cyanothece sp. PCC 7424] gi|218175384|gb|ACK74114.1| integrase family protein [Cyanothece sp. PCC 7424] Length = 289 Score = 116 bits (290), Expect = 6e-24, Method: Composition-based stats. Identities = 49/269 (18%), Positives = 92/269 (34%), Gaps = 12/269 (4%) Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 TLK + ++ S+ + + + +T ++ S Sbjct: 11 VEITLKQASER-LLEMWLDGHSPHTVDSYRRSARRFLDFV-NKPLHLVTLADLQLWRASL 68 Query: 127 KH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 H PSS + +++ L + + + N ++++ PK K E+ Sbjct: 69 THLAPSSQGTAMAAIKSLLSFGHQIGVLPTNVGIALKSPKVKDTLNERILNEEEVMTMIA 128 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------ITVELP 238 + R+ L GLR S+ C + L++ S + G + + Sbjct: 129 NEPDERNRVLLRLLYAGGLRVSELCALKWKDLKSRNQSGQVTVFGKGGKTRTVLLPSGVW 188 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296 ++ + F ++ TQ KA A++AG+ S H +R A+ Sbjct: 189 QELCQIRGKSRGADPVFPSRMGGGHLDRTQVYRIVKAAASRAGIEGNVSPHWLRHAHASH 248 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKG 325 S D GA H + AT G +V E Y Sbjct: 249 SLDRGAPLHLVQATLGHSSVATTERYLHA 277 >gi|229110029|ref|ZP_04239606.1| DNA integration/recombination/invertion protein [Bacillus cereus Rock1-15] gi|228673382|gb|EEL28649.1| DNA integration/recombination/invertion protein [Bacillus cereus Rock1-15] Length = 369 Score = 116 bits (290), Expect = 6e-24, Method: Composition-based stats. Identities = 48/366 (13%), Positives = 118/366 (32%), Gaps = 44/366 (12%) Query: 17 RHGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + G G+R + + T A + + + TL Sbjct: 7 KRGNKYCIVIDIGPDPETGKRRQKWFSGYKTKKEA-QADVAKKITELNEGTFIEPSKVTL 65 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 K ++ + + S+ ++ ++++ + +I G K+ HI+ ++ Sbjct: 66 KDYLNHWLE-IKSMSIEKSTFAGYKAFINQHVIPSIGMVALHKLNVMHIQKCYKAAIDKG 124 Query: 131 SSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + L ++ AV+Q ++ NP E PK++ I+ WT+E++++F + Sbjct: 125 IANNSILLMHRILKSALNLAVKQNIISRNPTDFAEIPKKEKTPIQTWTEEEVKKFLAHSQ 184 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--------------TGTII 233 E S+ + + + +G+R + Q + ++ + + Sbjct: 185 E-SRYHIGYLLAITTGMRLGEVLGLRWQDIDFEKHTVTINQTSGHDNKIKTTAKTNSSKR 243 Query: 234 TVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKAKATK 279 T+ +P+ + L + ++ N + + F F K Sbjct: 244 TIPVPNETIAALKKHKILINKEKLRFGSAYLDQDLINCNEFGRIIKRAHFRKSFIRMTHK 303 Query: 280 AGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSR 337 G+ H +R AT+ G + G + Y+ + + + Sbjct: 304 VGIKEIKFHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLSIYSHVLPN--MQEEAVK 361 Query: 338 RISSVV 343 + Sbjct: 362 NFGKSI 367 >gi|325271628|ref|ZP_08138130.1| site-specific tyrosine recombinase XerC [Pseudomonas sp. TJI-51] gi|324103232|gb|EGC00577.1| site-specific tyrosine recombinase XerC [Pseudomonas sp. TJI-51] Length = 299 Score = 115 bits (289), Expect = 6e-24, Method: Composition-based stats. Identities = 37/279 (13%), Positives = 83/279 (29%), Gaps = 21/279 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR------SGVESRK 127 + Y ++ ++ + + D++I + I+ + + Sbjct: 5 LEAYCAHLRSERQVSEHTLLGYRRDLDKVIAYCKEQGIADWQALQIQQLRQLVARLHHHG 64 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS--- 184 S + L+++R L+++ R+ +P + PK + + + + Q Sbjct: 65 QASRSLARLLSAVRGLYRYLNREGLCQHDPAAGLSAPKGERKLPKVLDTDRALQLLDGGV 124 Query: 185 -FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFM 242 + + E SGLR S+ + HL K G + + Sbjct: 125 DDDFIARRDQAMLELFYSSGLRLSELSNLDLDHLDLAAGLVQVLGKGGKARVLPVGRKAR 184 Query: 243 KLLAMTP-------IGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSA 294 + L FI +++ KA + G + H +R A Sbjct: 185 EALKEWYRLRGIGNPRDRAVFITRQGNRISPRTVQQRVKAVGERELGQHLHPHMLRHSFA 244 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 + ++ + G + + YT D L Sbjct: 245 SHVLESSQDLRAVQEMLGHADISTTQIYTH-LDFQHLAA 282 >gi|260576668|ref|ZP_05844655.1| integrase family protein [Rhodobacter sp. SW2] gi|259021153|gb|EEW24462.1| integrase family protein [Rhodobacter sp. SW2] Length = 307 Score = 115 bits (289), Expect = 6e-24, Method: Composition-based stats. Identities = 41/289 (14%), Positives = 81/289 (28%), Gaps = 29/289 (10%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGVES 125 + + + A ++ ++ + + G +T + Sbjct: 10 RDALEAWLTQLRALDGAADHTITAYSADVAGYLSFLSLHRGGTEGLAALTAVPLADLRAW 69 Query: 126 RKH------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 H +P S + L++++ W +E LS PK + + RP + + Sbjct: 70 MAHEKGRGLSPRSLARALSAVKGFTGWLAEREGADATAVLSARAPKFRRKLPRPLSVDAA 129 Query: 180 QQFKSF-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 ++ L GLR S++ T K G Sbjct: 130 ADVLDRVGDQSLEPWIAARDAAVVTLLYGCGLRISEALGLTGATHPLPEVLRITGKGGKQ 189 Query: 233 ITVELPDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKAGVNK- 284 V + +A F +N Q ++ + + G+ Sbjct: 190 RLVPVLPAARAAVARYVSLCPFELAATGPLFRGARGGALNPRQIALVMEKTRAQLGLPAS 249 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 + H +R AT AG + G ++ + YT D RL Sbjct: 250 ATPHALRHSFATHLLSAGGDLRAIQELLGHASLSTTQGYT-AVDTQRLM 297 >gi|251771081|gb|EES51665.1| phage integrase family protein [Leptospirillum ferrodiazotrophum] Length = 324 Score = 115 bits (289), Expect = 6e-24, Method: Composition-based stats. Identities = 43/281 (15%), Positives = 90/281 (32%), Gaps = 20/281 (7%) Query: 65 RKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRS 121 R+ P ++ L+ + + A N+ ++ + R + + Sbjct: 3 RRPPDEVERLLDRFEEELLLAKKRAPNTVTAYLTDLRTFSRHLTREGVSLLDFDGEALTP 62 Query: 122 GVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 +E R + S +FL+S+R ++ V +P + P+ + ++++++ Sbjct: 63 YLERRGDLSVRSRARFLSSVRAWTRFL-ELSGVRKDPRETPPAPRLPRSLPKILSQDEVE 121 Query: 181 Q----FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITV 235 + EG + R F SGLR S+ + +++ G Sbjct: 122 RLIEAPDPHRPEGVRDRAILSFFYASGLRVSELATITADRVDLATGALRVMGKGAKERIA 181 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQ--------KMNATQFSIWFKAKATKAGV--NKS 285 L + LL+ F + + K AG+ S Sbjct: 182 FLDERTRHLLSDYLTTVRPAFAREHPELFLARDGAPLTRQALWTLIKKHGRAAGITSPLS 241 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 H +R AT + G + G + + E YT + Sbjct: 242 PHVLRHSFATHLLEKGLDIRSIQLLLGHEDIRTTEIYTHVS 282 >gi|283782965|ref|YP_003373719.1| tyrosine recombinase XerD [Gardnerella vaginalis 409-05] gi|283441042|gb|ADB13508.1| tyrosine recombinase XerD [Gardnerella vaginalis 409-05] Length = 319 Score = 115 bits (289), Expect = 6e-24, Method: Composition-based stats. Identities = 39/282 (13%), Positives = 84/282 (29%), Gaps = 30/282 (10%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-GDFDYRKITT------KHIRSGVESR 126 I + L+ + ++ S + + ITT + + Sbjct: 22 IQRFIAHIDIERGLSKKTVSAYASDLQDYTCWLYNERKIKDITTISQLDIESYIRTLNEL 81 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 + + L S+ ++ + + + V+ PK+ + E++ + Sbjct: 82 GLGTRTVARRLASIHEWHRFMLAHGDIQADVSAQVKAPKQADYLPDVLSIEEVNRVIEAA 141 Query: 186 ------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELP 238 + + EFL +G R S++ + + N +K T K V + Sbjct: 142 GNFGSSDAISIRDTALLEFLYATGARISEAVGVKFEDIDLNESVVKLTGKGSKQRLVPIG 201 Query: 239 DGFMKLLAMTPIGK------------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284 ++ L T F+N ++ +A ++K Sbjct: 202 GCAVRALRNYMEKSRPELALKGKRELHTIFLNKRGSALSRQSAWEIVTQAGERAKLDKPL 261 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 H +R AT GA + G +V + YT + Sbjct: 262 HPHTLRHSLATHLIAGGADVRTVQELLGHASVTTTQIYTHIS 303 >gi|302864521|ref|YP_003833158.1| integrase family protein [Micromonospora aurantiaca ATCC 27029] gi|302567380|gb|ADL43582.1| integrase family protein [Micromonospora aurantiaca ATCC 27029] Length = 383 Score = 115 bits (289), Expect = 6e-24, Method: Composition-based stats. Identities = 57/376 (15%), Positives = 114/376 (30%), Gaps = 52/376 (13%) Query: 13 KERTRHGKIIYYFRKGH------------GRRIRLPYPHESTFIPAYMSALTGSTPKREY 60 + R HG+ Y ++ G+R R Y + + A + + Sbjct: 4 RRRRAHGEGSVYEQRPGVWAAVIDLGWIDGKRKR-KYVYAKSEAEAVRK-RDELRRQLQL 61 Query: 61 INSPRKKPTTLKWLISEYRKSAHWG-SLAVNSRISFESYF-DQIIRKSGDFDYRKITTKH 118 +P T++ ++E+ + ++ + ++ G ++T + Sbjct: 62 GVDLTAQPRTVEAWLTEWLRDVKAHDGTRPSTLARYRLAVTKHLVPGLGRVKLDRLTPRE 121 Query: 119 IRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 ++ + + P+S I+ +RV A R + VA N + + P R T Sbjct: 122 VQRFLTGLRGKLAPASIIKVHAVLRVALADAERMDLVARNVAKAAKPPALGRVERRALTP 181 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-------------- 222 E+ +Q S + G + F L +GLR ++ + Sbjct: 182 EEAKQLLSVLT-GDRLESLFVLALATGLRRAELLGLRWSDVDLPGKALFVRQTVQRTDRG 240 Query: 223 --SIKTQKTGTIITVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNA 266 + + + + L ++ L F + M Sbjct: 241 LEFVPPKTHRSSRPLPLSALAVRALEAQRVRQARERLAAGELWSDLGLVFASTIGTAMEP 300 Query: 267 TQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324 + F+ AG++ H +R AT D G +M G T+ TY Sbjct: 301 RNVNRRFEQLRAAAGLDWLHLHDLRHAFATFLLDQGEELRTVMELLGHSTIRMTADTYGH 360 Query: 325 GA-DRIRLGIKNSRRI 339 R R R+ Sbjct: 361 VLPARARQAASAIDRV 376 >gi|54308529|ref|YP_129549.1| putative integrase [Photobacterium profundum SS9] gi|46912958|emb|CAG19747.1| putative integrase [Photobacterium profundum SS9] Length = 295 Score = 115 bits (289), Expect = 6e-24, Method: Composition-based stats. Identities = 41/283 (14%), Positives = 90/283 (31%), Gaps = 19/283 (6%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPS 131 L ++ + ++ +I + D +TT ++ S H+ S Sbjct: 12 LYEQHLYQLTAAGKRPATIDAYSRAVRRISQFF-DRCPDAMTTADLKQYFASLIQTHSWS 70 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 + ++ ++ + +E+ ++ P + + T + + ++ + Sbjct: 71 TVKLDRNGLQFFYRHTLEKEWQWLDIVK----PPQSKKLPDIITAQQVAL-LISMTKQKR 125 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAMTP 249 ++ F L GLR + V + + I+ K G V +P + L Sbjct: 126 YQIFFLTLYTMGLRLGEGLSLTVHDIDQHTMQVHIRDGKGGKDRLVPVPQRTLNALRAHW 185 Query: 250 IGKETFF------INNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301 + N M+ K G+NK S H +R AT + G Sbjct: 186 LTHRHPRLIFPGKGCNTDNPMDRGGVQKAMKLVLKDCGINKPISPHSLRHCFATHLLEQG 245 Query: 302 ATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSRRISSVV 343 L G +++ YT+ + R R++ + Sbjct: 246 LDLRSLQILLGHASLNTTARYTRMTQIKQRDAALAINRLADAL 288 >gi|299137337|ref|ZP_07030519.1| integrase family protein [Acidobacterium sp. MP5ACTX8] gi|298600742|gb|EFI56898.1| integrase family protein [Acidobacterium sp. MP5ACTX8] Length = 317 Score = 115 bits (289), Expect = 6e-24, Method: Composition-based stats. Identities = 36/289 (12%), Positives = 83/289 (28%), Gaps = 34/289 (11%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVES 125 L+ EY L S +++ + + +T + + Sbjct: 11 ASLLREYMTHLRVERGLRPLSCEAYQRDLEMFAEFLEGANATLLTARQESVSGFMQHLRE 70 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS- 184 S + L+ +R ++W + + + +P +++E P + + ++ + Sbjct: 71 HGIESRSVARKLSCLRGFYRWLLMDKRIPHDPTVNIESPSSWKVLPKSLAETEVNEMLER 130 Query: 185 ---------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIIT 234 + E L GLR + + L+ + K Sbjct: 131 TGVAARSDAADGASLRDHAILELLYAGGLRVGEIVSLRQEDLRLESASVQVRGKGDKERI 190 Query: 235 VELPDGFMKLLAMTPIGKETFFIN------------NDKQKMNATQFSIWFKAKATKAGV 282 V + ++ L + + + ++ + A Sbjct: 191 VPIGRSAIEALEAYVQRGRPELMRSKSGVQRTLFLSVRGNPLTTQKVWQMVRSVNSHA-- 248 Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330 S H +R AT + GA + G + + YT A DR++ Sbjct: 249 --SPHKLRHSCATHMVEHGADLRTVQTLLGHADIATTQVYTHLAIDRLK 295 >gi|319760989|ref|YP_004124926.1| integrase family protein [Alicycliphilus denitrificans BC] gi|317115550|gb|ADU98038.1| integrase family protein [Alicycliphilus denitrificans BC] Length = 454 Score = 115 bits (289), Expect = 6e-24, Method: Composition-based stats. Identities = 61/358 (17%), Positives = 116/358 (32%), Gaps = 25/358 (6%) Query: 9 PFVTKERTRHGKI----IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64 P + T HG+ Y G R+ ++ E T A A R+ + Sbjct: 29 PGFLCKVTAHGRKVFMLQYRTNWGERRKPKIGQFGELTVEQARSIAQDWLADVRKGDDPS 88 Query: 65 RKK-----PTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKH 118 K T+K L ++ + + S++ Y I+ G +T H Sbjct: 89 AAKLAARMAPTVKELCEQFIEEYSRPRNKPRTVDSYQGYIDRHILPALGKLKVPDVTRAH 148 Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 I + ++ + +A + L +R +F A Y PK + +G + + Sbjct: 149 ITTLMKDKARIGVTANRVLACLRKMFNMAEVWGYRPDGSNPCRHVPKYREDGETRYINNE 208 Query: 179 MQQFKSFWSEGSQP------------RLAFEFLL-YSGLRCSDSCRAGVQHLQNNIFSIK 225 + + + RL FEF + +R + ++ + K Sbjct: 209 ELARLYAYLDRADAQGLEHPTVTLAVRLQFEFSARMTEIRTLEWAWVDFENRRVVWPDSK 268 Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NK 284 T ++ + I + K+ + + + +K +A V + Sbjct: 269 TGDMSKPMSEAAYQLLRNAPRIDDSPYVCPAIFDAKKPLPDSTYYNGWKRILGRAEVAHV 328 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSRRISS 341 HG+R +AT A++G MA KTV Q Y D +R + + Sbjct: 329 GTHGIRHRAATDIANSGIPIKVGMALTAHKTVTQFMAYVHAEDDPVRAAAEKVATLRR 386 >gi|256044630|ref|ZP_05447534.1| phage-related integrase [Brucella melitensis bv. 1 str. Rev.1] gi|265991056|ref|ZP_06103613.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. Rev.1] gi|263001840|gb|EEZ14415.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. Rev.1] Length = 341 Score = 115 bits (289), Expect = 7e-24, Method: Composition-based stats. Identities = 57/333 (17%), Positives = 113/333 (33%), Gaps = 25/333 (7%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 + G+ YY G +R P + F+ + A + + + Sbjct: 11 KVNAKGRTYYYA-WRGGPALR-GEPGSAEFMASLQEA---------NDSRVIPDASKFRA 59 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVESRKH 128 +I+ Y+ S + LA +++ ++ + D+I +K GD + IR Sbjct: 60 VITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSITQFDLPQKIRPVIRKWRGEFAD 119 Query: 129 TPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 P +A + + + +AV ++ NPC +++ + WT +D+ + K+ Sbjct: 120 KPRTADYGMQVLSRVLSYAVDPLGKISQNPCEGIKQLYKNDRAAIIWTDQDIARLKTKC- 178 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLL 245 + A + ++GLR D R H+ +N + + + L LL Sbjct: 179 -SPEVAWAVDLAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRHTKEAVIPLYAELRALL 237 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGA 302 P N K F F +A + + H R +AT AG Sbjct: 238 QTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLHFHDFRGTAATKFYIAGL 297 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 + + GW+ + + I+ Sbjct: 298 SERVIAEIMGWE-EETVRNIIRRYVSKTAAIEA 329 >gi|134283292|ref|ZP_01769993.1| phage integrase [Burkholderia pseudomallei 305] gi|217424779|ref|ZP_03456276.1| phage integrase family protein [Burkholderia pseudomallei 576] gi|134245487|gb|EBA45580.1| phage integrase [Burkholderia pseudomallei 305] gi|217392235|gb|EEC32260.1| phage integrase family protein [Burkholderia pseudomallei 576] Length = 348 Score = 115 bits (289), Expect = 7e-24, Method: Composition-based stats. Identities = 50/340 (14%), Positives = 108/340 (31%), Gaps = 22/340 (6%) Query: 18 HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77 G RK + + + Y++ + T+ + Sbjct: 9 SGNWKAIVRKNGWP-TTIKTFRTKRDAEDWARRTEDEMVRGVYLSRAPSEKLTVSAALKR 67 Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF- 136 Y + ++ S + G + ++ + + + R S Sbjct: 68 YMEEVSITK-KATTQRSERFTSQHLAAFFGKYSMAAVSAELVAKYRDERLAAGKSNNTVR 126 Query: 137 --LTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 L + LF+ A+++ + NP ++ +P R T E+ Q+ + S P Sbjct: 127 IELAMLGHLFRVAIQEWGIGLTFNPVANIRKPSPGAGRDRRLTPEEQQRLFAAADAHSNP 186 Query: 193 RLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMT 248 L + L +G+R S+ + N + K G++ V L +++L Sbjct: 187 ILGWIVRLAVETGMRSSEITGLHRSQVDLNRRVVTLKDTKNGSVRLVPLTRVAVEILRSA 246 Query: 249 PIGKE--------TFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISAD 299 F K F + + AG+ + H +R + + + Sbjct: 247 LDNPIRPIDVDLVFFGEPGRDGKRKPYVFQKLWASIVQTAGLADLHFHDLRHEAVSRLVE 306 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 AG + E+ + G K++ + YT R ++ R+ Sbjct: 307 AGLSDQEVASISGHKSMQMLKRYTHL--RAEDLVEKLDRL 344 >gi|194436337|ref|ZP_03068439.1| integrase [Escherichia coli 101-1] gi|283787274|ref|YP_003367139.1| phage integrase [Citrobacter rodentium ICC168] gi|194425065|gb|EDX41050.1| integrase [Escherichia coli 101-1] gi|282950728|emb|CBG90404.1| phage integrase [Citrobacter rodentium ICC168] Length = 334 Score = 115 bits (289), Expect = 7e-24, Method: Composition-based stats. Identities = 46/314 (14%), Positives = 94/314 (29%), Gaps = 10/314 (3%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 ++ G+ + R + R+ + + + ++ + TL Sbjct: 4 KKLEDGRYLLDIRPNGRKGKRVRKVFDKKSVAVATERYIMANAEKREYIQGYRDRRTLND 63 Query: 74 LIS-EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132 L+ + A R + +++ D K+ RS + PSS Sbjct: 64 LLELWWMYHGQHRRKAEEDRKQLCNIINELGADMQAVDLDKLKIIAWRSQKIAAGLKPSS 123 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 A +++ + +F R + + + + EG Sbjct: 124 ANRYMNRLSGMFTVLKRIGLWDAEHPVRGISILYVSPREMAFLSQKEVALLLDTLEGDYW 183 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252 R+A L +G R S++C+ + + +N + K G TV + + + G Sbjct: 184 RVALLC-LSTGARWSEACKLRGEQIVHNRVTFLETKNGRKRTVPISQAVCEAIRTRETGN 242 Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYG 312 +F + K ++AH +R A+ G L G Sbjct: 243 LFEVK--------YREFCLALKRVKPDLPKGQAAHVLRHTFASHFVMNGGNIIALQKILG 294 Query: 313 WKTVDQAETYTKGA 326 T+ Q Y A Sbjct: 295 HATIQQTMAYAHFA 308 >gi|218783046|ref|YP_002434364.1| integrase family protein [Desulfatibacillum alkenivorans AK-01] gi|218764430|gb|ACL06896.1| integrase family protein [Desulfatibacillum alkenivorans AK-01] Length = 408 Score = 115 bits (289), Expect = 7e-24, Method: Composition-based stats. Identities = 54/375 (14%), Positives = 98/375 (26%), Gaps = 45/375 (12%) Query: 14 ERTRHGKIIYY--FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI-NSPRKKPTT 70 + R ++ Y+ +R G++ R A + + ++ T Sbjct: 29 KAKRSKRVRYWIAYRLPGGKQRREAVGFSIEDARAAEGKRKAEKKENPRVLKKSPEETMT 88 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV------- 123 + L Y L R E G + I + Sbjct: 89 FEDLAKWYLALPKVNGLKSFWR--IEMNLKTFNETFGKTKIKNIMAVDLEKFQVDGLAQG 146 Query: 124 ---------ESRKHTPSS-------AIQFLTSMRVLFKWAVRQEYV---AINPCLSVERP 164 E +K +S Q LT R + A + V + V+ Sbjct: 147 FKKRTRGSKEEKKEGGASQPASQAYIDQILTVARTMINRAFDSDIVSGETVKVFRRVKNL 206 Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 + R + K + + + Y+G+R + + I Sbjct: 207 QGGNANARDRVLTHDEFEKIMANLPAHAKPIIATAYYTGMRSGEIFPLTWDRVDLKERVI 266 Query: 225 K----TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280 + K V + + ++L+ P T + + K A KA Sbjct: 267 RLEAADTKDKEPRVVPICNELYEVLSGLPRAIHTDNVFLRYGEPIKK-LRNSLKEAAKKA 325 Query: 281 GVN--------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY-TKGADRIRL 331 G+ + H R T AG +M G T + Y T AD + Sbjct: 326 GIPFGRKVKNGFTFHDFRHTFNTNMRRAGVPESVIMKITGHSTRAMFDRYNTVDADDAKN 385 Query: 332 GIKNSRRISSVVDSD 346 + VD + Sbjct: 386 AVNIMSSFLQPVDQN 400 >gi|163738332|ref|ZP_02145747.1| phage integrase [Phaeobacter gallaeciensis BS107] gi|161388253|gb|EDQ12607.1| phage integrase [Phaeobacter gallaeciensis BS107] Length = 311 Score = 115 bits (289), Expect = 7e-24, Method: Composition-based stats. Identities = 37/290 (12%), Positives = 84/290 (28%), Gaps = 29/290 (10%) Query: 72 KWLISEYRKSAHWGSLA-VNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSG 122 + + ++ A N+ ++ + + G +I+T +R+ Sbjct: 14 RDALEQWLAGLAALQGAAENTITAYRGDVVEFLAFMTHHFGGPQGLGALAEISTGDMRAW 73 Query: 123 VESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE-- 177 + + + T + A + L++++ + W ++ LS PK + + RP ++ Sbjct: 74 MAATRATGTGARSLARKLSAVKSFYTWLAERQGFEPTAVLSARSPKFQKKLPRPLAEDAA 133 Query: 178 -----DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 ++ + ++ L GLR S++ T K G Sbjct: 134 RAVIETVEFQSTTDWVAARDVAVVTLLYGCGLRISEALGLTGADAPLPAVLRITGKGGKE 193 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-------FSIWFKAKATKAGVNK- 284 V + + + G+ Sbjct: 194 RIVPVLHAARAAVDRYLRLCPHPQERAAPLFRGVRGGALNARLIRSAMAQARAQLGLPAS 253 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 + H +R AT +AG + G ++ + YT D L Sbjct: 254 ATPHALRHSFATHLLEAGGDLRAIQELLGHASLSTTQAYT-AVDTAHLMD 302 >gi|296284090|ref|ZP_06862088.1| phage integrase [Citromicrobium bathyomarinum JL354] Length = 299 Score = 115 bits (289), Expect = 7e-24, Method: Composition-based stats. Identities = 38/274 (13%), Positives = 88/274 (32%), Gaps = 23/274 (8%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFD---YRKITTKHIRSGVESRKH-- 128 ++ + L+ ++ ++ ++++ ++ D ++ +R+ + R+ Sbjct: 2 LARWESHLATERRLSPHTVRAYIRAAERLLEETPATDWQGVARLGAPALRAQLARRRADG 61 Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ------ 181 + SA + L+++R +A + + P+ K RP T ++ Sbjct: 62 LSNRSAARELSALRAFLAFARAEAGFDDAQAPRLRGPRIKRTLPRPVTPDEALHLAERIG 121 Query: 182 -FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 + G + R L +G+R ++ +H Q T K G + Sbjct: 122 EERREEWTGLRDRAVLLLLYGAGMRLGEALSLTGEHAQIGETIRVTGKGGKTRVAPILPA 181 Query: 241 FMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291 +A F ++ + G+ + H +R Sbjct: 182 IRSAIAAYVAACPHDLAPDKPLFRGQRGGPLSPGLVQKAMAQVRGEIGLPANATPHALRH 241 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKG 325 AT AGA L G ++ + YT+ Sbjct: 242 SFATHLLGAGADLRSLQELLGHASLGSTQIYTEV 275 >gi|225076001|ref|ZP_03719200.1| hypothetical protein NEIFLAOT_01028 [Neisseria flavescens NRL30031/H210] gi|224952716|gb|EEG33925.1| hypothetical protein NEIFLAOT_01028 [Neisseria flavescens NRL30031/H210] Length = 316 Score = 115 bits (289), Expect = 7e-24, Method: Composition-based stats. Identities = 44/271 (16%), Positives = 93/271 (34%), Gaps = 17/271 (6%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI-TTKHIRSGVESRKHT 129 + + Y K+ + ++ ++ +++R D + T + + ++ Sbjct: 25 FAFHLERYLKTLLQQGKSEHTVSAYWRDLSELMRLLPDNLENGLPTRRDFVAVLKKLSQK 84 Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 SS + L+ R W V+ E + +P +++ P+ + +E + Sbjct: 85 GLSESSLARKLSVWRQYCSWLVQIEVMESDPTFNMKAPRLPERLPKALPQEPLNHILDHA 144 Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGF 241 + + FE + SGLR S+ + + + + K G V L Sbjct: 145 PVDDELDVRDKAMFELMYGSGLRLSEIQGLNLDGIVLDEGWVSVKGKGGKQRQVPLVAKS 204 Query: 242 MKLLAMT------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293 + L G++ F N + ++ Q +A A + G + S H +R Sbjct: 205 IAALRDYLAVRIAKEGEQALFTNKNGGRLGQRQIQKRLQAWAVRVGSASHISPHMMRHSY 264 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324 AT A + G + + YTK Sbjct: 265 ATHLLQASGDIRAVQELLGHSNLSATQVYTK 295 >gi|209693751|ref|YP_002261679.1| site-specific tyrosine recombinase XerC [Aliivibrio salmonicida LFI1238] gi|208007702|emb|CAQ77813.1| tyrosine recombinase XerC [Aliivibrio salmonicida LFI1238] Length = 303 Score = 115 bits (289), Expect = 7e-24, Method: Composition-based stats. Identities = 40/281 (14%), Positives = 88/281 (31%), Gaps = 21/281 (7%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGVESRKH 128 K L + Y + L++ ++ +++ I + G ++ + +R Sbjct: 11 KHLTAFYEFLRNEKGLSIYTQRNYKRQLTTIAEQLIELGVDSWQDVDAGWVRQITSKGMR 70 Query: 129 TPSSAIQFLTSMRV---LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + A T + F + V + + NP V P++ + ++M Q Sbjct: 71 SGLKASSLSTRLSSLRSFFDFLVLRNVLQANPAKGVSAPRKSRPLPKNIDVDEMGQLLEV 130 Query: 186 WSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 + + R E + +GLR ++ V+ +Q ++ V Sbjct: 131 NEDDPLSIRDRAMMELMYGAGLRLAELVGIDVRDIQLRQGELRVIGKGDKERKVPFSGKA 190 Query: 242 MKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKAGV--NKSAHGVRK 291 + L + +K +++ K GV + S H +R Sbjct: 191 KEWLGHWLQVRNQLANPEEKGLFVSKLGVRISHRNVQKRMAEWGMKQGVNSHISPHKLRH 250 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 AT ++ + G + + + YT D L Sbjct: 251 SFATHMLESSGNLRAVQELLGHENISTTQIYTH-LDFQHLA 290 >gi|154487520|ref|ZP_02028927.1| hypothetical protein BIFADO_01375 [Bifidobacterium adolescentis L2-32] gi|154084038|gb|EDN83083.1| hypothetical protein BIFADO_01375 [Bifidobacterium adolescentis L2-32] Length = 389 Score = 115 bits (289), Expect = 7e-24, Method: Composition-based stats. Identities = 50/342 (14%), Positives = 107/342 (31%), Gaps = 38/342 (11%) Query: 11 VTKERTRHGKII-YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 + + T+ GK +RK G A+ +A + P+ Sbjct: 5 IRQYTTKSGKRYEVRYRKPDGSSTGRRGFKRKMDADAWGAANVTAAKSVGAYIDPQAGRR 64 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128 ++ + + + + S E + + + G + + IT ++ V Sbjct: 65 LVEDFWEPWLAAKKTKA-KPSYIKSLEDAWRVHVEPQWGMREMQSITRDEVQRWVTDLAG 123 Query: 129 TPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 SA + + +R L + A + NPC +E P+++ + +++ + Sbjct: 124 R-RSASVTIRAENLLRSLMERAKADRCIHDNPCDGIELPRKQVRKHVYLSADELSRVAMQ 182 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------------- 232 L G+R + V+ + + ++ T Sbjct: 183 CGWREP---IVLTLGLCGMRWGELVALRVEDVDLQRCRLHIYRSITRLSSRLVETDPKTH 239 Query: 233 --ITVELPDGFMKLLAMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKA 280 +V P LLA G+ + N T+ WF +A Sbjct: 240 DGRSVMFPLVLRPLLARQCEGRRSSDFLFTAPGEPLDEPMGNGWNPTRSDGWFAVALRRA 299 Query: 281 GVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 GV++ + H +R +A++ +GA + G K+ Sbjct: 300 GVDRGHMTIHDLRHTAASLMVQSGANVKTVQRQLGHKSAAMT 341 >gi|126736338|ref|ZP_01752080.1| tyrosine recombinase XerD [Roseobacter sp. CCS2] gi|126714159|gb|EBA11028.1| tyrosine recombinase XerD [Roseobacter sp. CCS2] Length = 313 Score = 115 bits (289), Expect = 7e-24, Method: Composition-based stats. Identities = 46/293 (15%), Positives = 93/293 (31%), Gaps = 30/293 (10%) Query: 67 KPTTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSG- 122 T+ + + ++ N+++++ G + + H+ S Sbjct: 4 TNQTMARWVQVFLEAQAAELDATTNTQLAYARDLQDFAGWLGPKGLHFSDASRDHVESYL 63 Query: 123 --VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 E+ S+ + L++++ L+++A + + NP + ++ P R+ + + E++ Sbjct: 64 IDCEAEGLAKSTRARRLSAIKQLYRFAFEEGWRDDNPAIQIKGPGREQRLPKTLSIEEVD 123 Query: 181 QFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITV 235 + E + E L +G+R ++ V + + + K V Sbjct: 124 RLLDAARNTPKEALRNACLMELLYATGMRVTELVSLPVSAARGDPRMLLVRGKGDKERLV 183 Query: 236 ELPDGFMKLLAMT----------------PIGKETFFINNDKQKMNATQFSIWFKAKATK 279 L LA P K F + +F K A Sbjct: 184 PLSPPARAALATYLTARDKAEDAGRKDGKPASKFLFPSRGKSGHLTRHRFFGLIKEFAVA 243 Query: 280 AGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 GV + H +R AT GA + G V E YT D Sbjct: 244 GGVSPAKVTPHTLRHAFATHLLAGGADLRSIQTMLGHADVATTEIYTHVLDER 296 >gi|257866765|ref|ZP_05646418.1| phage integrase [Enterococcus casseliflavus EC30] gi|257872718|ref|ZP_05652371.1| phage integrase [Enterococcus casseliflavus EC10] gi|257800723|gb|EEV29751.1| phage integrase [Enterococcus casseliflavus EC30] gi|257806882|gb|EEV35704.1| phage integrase [Enterococcus casseliflavus EC10] Length = 380 Score = 115 bits (289), Expect = 7e-24, Method: Composition-based stats. Identities = 55/361 (15%), Positives = 115/361 (31%), Gaps = 48/361 (13%) Query: 14 ERTRHGKIIYYF------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67 + ++G+ + F G+ IR + A + +E Sbjct: 7 YKLQNGEKYWGFETYLGKDPKTGKDIRTKRRRFKSKAEAQTALNRLLVDFKEKQEFKINV 66 Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR 126 TT + L + + + +S + + I+ G+ KI+ + + V Sbjct: 67 -TTFQELYELWIDNYRTR-VKPSSVAVAQRFCKNHILPAFGELRLDKISVSYCQKQVNEW 124 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR--KTEGIRPWTKEDMQQFKS 184 T + +FK+ V E NP P++ + ++ +TK+ +Q F Sbjct: 125 HKTLKQYGFLRKTTAQIFKFGVAMEVCKDNPMSKTLLPRKIEDEQPLKFYTKDQLQLFLQ 184 Query: 185 FWSEGSQPRLAFEFLL--YSGLRCSDSCRAGVQHLQNNIFS-----------------IK 225 E + +L F L Y+G+R S++ + + + Sbjct: 185 NTKENNSVKLYTFFRLLAYTGMRKSEALALQWEDIDYFNKTVTIGKTIAQDEFNHVVLQV 244 Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF---------------S 270 + + T++L D +K L + + I + QF + Sbjct: 245 PKTKNSSRTIQLDDFTLKQLRIWQQEQMKIMILYGYNTNSPKQFLFTTNTNKLYYPQVVN 304 Query: 271 IWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGAD 327 W K + + HG R ++ ++GA+ E+ G K + Y Sbjct: 305 DWLDWIYKKTPMEPQITPHGFRHTHCSLLFESGASIKEVQERLGHKDIKTTMNIYAHVTP 364 Query: 328 R 328 + Sbjct: 365 Q 365 >gi|153812497|ref|ZP_01965165.1| hypothetical protein RUMOBE_02896 [Ruminococcus obeum ATCC 29174] gi|149831422|gb|EDM86510.1| hypothetical protein RUMOBE_02896 [Ruminococcus obeum ATCC 29174] Length = 378 Score = 115 bits (289), Expect = 7e-24, Method: Composition-based stats. Identities = 45/382 (11%), Positives = 113/382 (29%), Gaps = 43/382 (11%) Query: 1 MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFI--PAYMSALTGSTPKR 58 M+ + K + + Y + +I+ Y + T+ + + + Sbjct: 1 MSRKG---ENIYKRKDGRWEGRYCKTRDESGKIKYGYVYARTYTDTKSKLELVKKECLSL 57 Query: 59 EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTK 117 ++ T + E+ L S + + + ++ + D IT + Sbjct: 58 PEKSTGNFSIHTFADVAGEWLLYKK-RILKETSISKYNNIINIHLLPFFREQDIHNITLE 116 Query: 118 HIRSGVESRKHT---------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168 + + + T P + + L+ M+ + +A ++Y+ I P L E Sbjct: 117 QMEAFYNALLMTKTAKGTALAPKTTLDILSVMKAILFYATTKKYMNILPVLRFEYRAVPK 176 Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228 + + + + L +Y+G+R ++C + + I K Sbjct: 177 KLVVLSGRNQKILSTYLCLNLTYRNLGLLICMYTGIRLGEACALTWEDISLTEGYIYIHK 236 Query: 229 TGTIITVELPDGFMKLLAMTP------------------------IGKETFFINNDKQKM 264 T I E ++ P + + ++ + Sbjct: 237 TMQRIQKEHNGKKTMIIIAEPKTQSSIRTIPLPRQLIQLIKSSKLPMQGYLLTGSYERYI 296 Query: 265 NATQFSIWFKAKATKAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVD-QAETY 322 + FK + + ++ H +R AT + G L G ++ Y Sbjct: 297 EPRNYQYHFKKILQQCKIPQTNFHTLRHTFATRCVELGFDVKTLSEILGHSNINITLNRY 356 Query: 323 TK-GADRIRLGIKNSRRISSVV 343 + + + ++ +V Sbjct: 357 VHPSFNLKKQNMNKMNKLIAVK 378 >gi|90420213|ref|ZP_01228121.1| tyrosine recombinase XerD [Aurantimonas manganoxydans SI85-9A1] gi|90335547|gb|EAS49297.1| tyrosine recombinase XerD [Aurantimonas manganoxydans SI85-9A1] Length = 328 Score = 115 bits (289), Expect = 7e-24, Method: Composition-based stats. Identities = 39/289 (13%), Positives = 87/289 (30%), Gaps = 34/289 (11%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTP- 130 I + + A N+ ++ + TT+ IR+ V Sbjct: 23 IETFLEMMAVERGAADNTVAAYRRDLEDAAGFMAGQGGSLMTATTEDIRAYVGRLAARGF 82 Query: 131 --SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-- 186 +S + L+++R +++ + +P +E +RK + +++++ + Sbjct: 83 AETSRSRRLSALRQYYRFLYVEGRRGDDPTGPIEGARRKRPLPKVMSEDEVDRLLDRAAA 142 Query: 187 ------------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTII 233 ++ E L +G+R S+ L+ I + Sbjct: 143 EAVDPERSPAGLVRAARMHALVELLYATGMRVSELVSLPRAVLRGRQRMIVVRGKGDKER 202 Query: 234 TVELPDGFMKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 V + + L F ++ + F+ KA A + G+ Sbjct: 203 MVPIGEAARDALIRFAEAMKLAGVSEEGRWLFPAVSETGHLTRQAFARDLKALAAREGIP 262 Query: 284 ---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 S H +R A+ GA + G + + YT + Sbjct: 263 AERISPHVLRHAFASHLLQNGADLRAVQELLGHADISTTQIYTHVLEER 311 >gi|257870032|ref|ZP_05649685.1| phage integrase [Enterococcus gallinarum EG2] gi|257804196|gb|EEV33018.1| phage integrase [Enterococcus gallinarum EG2] Length = 390 Score = 115 bits (289), Expect = 7e-24, Method: Composition-based stats. Identities = 54/383 (14%), Positives = 119/383 (31%), Gaps = 59/383 (15%) Query: 11 VTKERTRHGKIIYYFR--------KGHGRRIRLPYPHE-STFIPAYMSALTGSTPKREYI 61 + K + ++G I Y F+ G R AY + Sbjct: 2 IKKYKKKNGTIAYMFKAYLGIDPVTGKKRYTTKRGFKTQREAKQAYSRLMVKVQENDVVT 61 Query: 62 NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIR 120 +S + L E+ K ++ ++ + I+ G+ KIT + Sbjct: 62 DSNKL----FSELAEEWMKQYK-NTVKESTYVVQRLAMEKHILPIFGELKISKITIPFCQ 116 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-------IRP 173 V + + + +FK+A+ V NP + RPKRK + Sbjct: 117 KQVNNWYSYYTKYSNLIGLTSSVFKYAISLRLVRSNPMNGIIRPKRKKKIDEEAFVAPYY 176 Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------------- 218 E ++ + F L ++GLR + + + Sbjct: 177 AKDELLEFLDIVKAFPEPIYPMFRILAFTGLRKGELLGLRYKDIDFQNKTLSVKQTLATV 236 Query: 219 --NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN----------------D 260 + + ++ T+ L D +K++ I ++ FF+ + + Sbjct: 237 DGWKLEFQVPKTEKSLRTISLDDETLKVIKKHMIKQKAFFLEHGLKTKENGEQLLFATFE 296 Query: 261 KQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 + + + + + + + HG R ++ ++GA+ E+ A G + Sbjct: 297 NKPYYLDFVNHNLERIIKEHNLKRITPHGFRHTHCSLLFESGASIKEVQARLGHTDIKTT 356 Query: 320 E-TYTKGADRIRLGIKNSRRISS 341 Y + R + + R ++ Sbjct: 357 MDIYNHLS--KRQTEETANRFAN 377 >gi|227823255|ref|YP_002827227.1| site-specific tyrosine recombinase XerD [Sinorhizobium fredii NGR234] gi|227342256|gb|ACP26474.1| tyrosine recombinase XerD [Sinorhizobium fredii NGR234] Length = 313 Score = 115 bits (289), Expect = 7e-24, Method: Composition-based stats. Identities = 38/286 (13%), Positives = 83/286 (29%), Gaps = 31/286 (10%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESR---KH 128 + + + A+N+ S+E + T ++ + Sbjct: 9 LEAFLEMMSAERGAAINTLQSYERDLRDALAFLRSSGARLNSATADDLKRYLSHLAGEGF 68 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED---------- 178 SS + L+++R +K+ + +P ++ PK+ + + +D Sbjct: 69 KSSSQARRLSALRQFYKFLYAEGLRGDDPTGILDAPKKARALPKTLSIDDVTRLIGQAEA 128 Query: 179 -MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----- 232 + E L +G+R S+ L N + + G Sbjct: 129 EAAAGGEDAFARLRMHALIELLYATGMRVSELVSLPASVLAQNGRFLVIRGKGNKERLVP 188 Query: 233 ------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284 + ++ A F + + F+ K+ A +AG+ Sbjct: 189 LSQAAIRAMRTYGDALRRRAAEAESPWLFPSSGKSGHLPRQVFARDLKSLAARAGIRVAV 248 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 S H +R A+ GA + G + + YT + Sbjct: 249 ISPHVLRHAFASHLLANGADLRAVQELLGHSDISTTQIYTHVLEER 294 >gi|237744359|ref|ZP_04574840.1| phage integrase [Fusobacterium sp. 7_1] gi|229431588|gb|EEO41800.1| phage integrase [Fusobacterium sp. 7_1] Length = 353 Score = 115 bits (289), Expect = 7e-24, Method: Composition-based stats. Identities = 53/364 (14%), Positives = 110/364 (30%), Gaps = 40/364 (10%) Query: 1 MTPSLRLPPFVTKERTRHGKIIYYFRKG----HGRRIRLPYPHESTFIPAYMSALTGSTP 56 M+ V G+ F +RI + Y Sbjct: 1 MSAEKEKIKGVY-----TGRWNARFTIKLLNNKSKRIFKRGFNSKKEALEY--------E 47 Query: 57 KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT 116 K+ +++ K +++Y + + + ++ + + I + IT Sbjct: 48 KKVILDNSLGSNIPFKVAVNQYLEFKKLR-IKELTYMNMSNILNSI-TYFDNLLISDITA 105 Query: 117 KHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 + + K+ SS +++LF W VR + +A NP V+R K +T+ Sbjct: 106 IQVSNFQNDLLKKYKGSSIRTINAYVKMLFTWCVRYKNLASNPFDMVDRLKLETKKRMDI 165 Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-- 232 D +L F+ L ++GLR ++ + + N +I K+ T Sbjct: 166 ITVDEFNQIIKQVNNPDMKLMFKLLFWTGLRIGEARALKIDDIDFNNKTISVTKSYTHLS 225 Query: 233 --------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK-A 277 +++ D + + +N + N + FK Sbjct: 226 GKSIITTPKTKGSIRVIKIDDVLLSEIKDYIDKASYILEDNFIFRFNKASYRYNFKNATI 285 Query: 278 TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLGIKN 335 G + H +R A+ + G + Y+ D+ IK Sbjct: 286 KVLGRDLRVHDLRHSHASFLINNGVDILLISKRLEHSNTAMTLNVYSHLYPDKESEAIKL 345 Query: 336 SRRI 339 ++ Sbjct: 346 INKL 349 >gi|309775481|ref|ZP_07670483.1| integrase/recombinase XerD [Erysipelotrichaceae bacterium 3_1_53] gi|308916777|gb|EFP62515.1| integrase/recombinase XerD [Erysipelotrichaceae bacterium 3_1_53] Length = 323 Score = 115 bits (289), Expect = 7e-24, Method: Composition-based stats. Identities = 39/292 (13%), Positives = 88/292 (30%), Gaps = 28/292 (9%) Query: 71 LKWLISEYRKSAHWGSLAV-NSRISFESYFDQIIRKSGDFD---YRKITTKHIRSGVESR 126 + + +Y + S++ + I + I+S + Sbjct: 3 IHEALQDYLHYIQAVDQKALATIHSYQQDLQEYEVWLIGKHKQVMEDILPQDIQSFLSEL 62 Query: 127 --------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 SS LTS+ + ++ Q ++P + + K++ + + D Sbjct: 63 EDGQKGEDGRKRSSVNHMLTSIHMFHRYITMQHPTILDPSIHLRGGKKEQQLPLYFNPHD 122 Query: 179 MQQFKSFWSEGSQ---PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIIT 234 +++ + E + + E L GLR S+ C + + ++ Sbjct: 123 IERLLDSFGEDERSLYQKAILELLYGCGLRVSEVCELRLNQVHLEQGYLRVIGKGDKERM 182 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKM---------NATQFSIWFKAKATKAGVN-- 283 V + + L + + ++ K + ++ Sbjct: 183 VPMHKRCVLALRVYVTQIRPGWEKRKSTRVFINSRGNILTRQYVHTLIKQRLHMLNLDER 242 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI-RLGIK 334 SAH R AT D GA + G + + + YT +R + I+ Sbjct: 243 LSAHSFRHSFATHLLDGGADLRVVQELLGHRDIATTQIYTHVQNRRLKEAIE 294 >gi|254457347|ref|ZP_05070775.1| phage integrase [Campylobacterales bacterium GD 1] gi|207086139|gb|EDZ63423.1| phage integrase [Campylobacterales bacterium GD 1] Length = 278 Score = 115 bits (289), Expect = 7e-24, Method: Composition-based stats. Identities = 35/254 (13%), Positives = 82/254 (32%), Gaps = 13/254 (5%) Query: 77 EYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---PSS 132 E+ +S + + + S++ + +R + T I K + P + Sbjct: 11 EFLQSLEDFRGYSELTIKSYDEAITEALRYVEI--IEEDTHTTINLMPYRIKISQLNPKT 68 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 + L+++R K+ + + E K +P + + + + Sbjct: 69 ISKKLSAIRTFVKYLNDNKI--KIYLKADESVKVAKTLPKPISHKHILEALEH--AEFYE 124 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT--PI 250 R L GLR S+ + + + K V L +L+ Sbjct: 125 RFVVTMLYSLGLRISELASLKLSDISDEWIR-VLGKGNKHRDVPLLRTTRELIDEYLSNN 183 Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMAT 310 + F + ++++ + G+ + H +R AT ++ A ++ Sbjct: 184 CPKIFLFEANDERLSENSLRYTVNKVFKRVGLKVTPHQLRHSYATALLNSSAPIADVSEL 243 Query: 311 YGWKTVDQAETYTK 324 G ++ + YTK Sbjct: 244 LGHSSMATTQIYTK 257 >gi|46446092|ref|YP_007457.1| site-specific tyrosine recombinase XerC [Candidatus Protochlamydia amoebophila UWE25] gi|46399733|emb|CAF23182.1| putative XerC Protein [Candidatus Protochlamydia amoebophila UWE25] Length = 329 Score = 115 bits (289), Expect = 7e-24, Method: Composition-based stats. Identities = 49/320 (15%), Positives = 99/320 (30%), Gaps = 57/320 (17%) Query: 73 WLISEYRKSAHW-GSLAVNSRISF-----------------ESYFDQIIRKS-------- 106 ++ + + + ++ ++ ES + I K Sbjct: 4 AACYQFLEHLKVVKNASEHTIRNYAIDLNLFKNYQEKQIFAESKLEHISPKICARESYQQ 63 Query: 107 ------GDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINP 157 G I K IR + + + + L+S+R F++ Q + INP Sbjct: 64 RQSCHDGILKLEDIDRKTIRGFLAWLSANQQNKRTIARRLSSLRSFFRYLQTQNLIQINP 123 Query: 158 CLSVERPKRKTEGIRPWTKED----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213 +E PK + + E +Q + G + R E SGLR S+ Sbjct: 124 TEELESPKLNKKLPVSLSYEQVSLLFEQPDTTSYLGFRDRTIMELFYSSGLRVSELVSLD 183 Query: 214 VQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPIGKETFFI--------------- 257 Q + +IK K + + K + + E + Sbjct: 184 RQDFDYSNLTIKLKGKGKKQRLIPITKNAAKWIQSYLLHIERYQNLETHSAESDSNAIFL 243 Query: 258 NNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKT 315 N ++ F TK+G+ + H +R AT + G + G ++ Sbjct: 244 NKWGTRLTTRSVDRKFDLYLTKSGLAGKVTPHTIRHTIATHWLENGMDLKTIQLLLGHRS 303 Query: 316 VDQAETYTKGADRIRLGIKN 335 + YT+ + +++ + Sbjct: 304 LSTTTIYTQVSTKLKQKVYA 323 >gi|255326004|ref|ZP_05367092.1| tyrosine recombinase XerC [Rothia mucilaginosa ATCC 25296] gi|255296895|gb|EET76224.1| tyrosine recombinase XerC [Rothia mucilaginosa ATCC 25296] Length = 358 Score = 115 bits (289), Expect = 8e-24, Method: Composition-based stats. Identities = 53/303 (17%), Positives = 96/303 (31%), Gaps = 33/303 (10%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126 + ++ + + + + + S+ S + G I IR + S Sbjct: 56 FRPVLDRFERFLRYEKHRSEETIRSYISDLEGFFGYMARRGVRHLDSIDASPIREWLGSL 115 Query: 127 KHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 S+ + +++R F WA +E V NP + PKR+ ++E M Q Sbjct: 116 HLRQAARSTVARRGSTLRTFFTWAQEEELVHANPTRGMRTPKRENHLPPVLSREQMNQLL 175 Query: 184 SFWSEG----------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTI 232 + E + E L SG+R S+ +Q + +++ K Sbjct: 176 TTLQERRAQDPRDARLLRLEAVVEVLYASGMRISELTGLDLQSVDRANKTVRVLGKGNKE 235 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKS------ 285 V L +K L +I Q + A A + + + Sbjct: 236 RVVPLGTPALKALNRWVSYGRPQWIPEGAQGVTALFIGPRGGRANARQIREDLTRLLRTV 295 Query: 286 -------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338 AH +R +AT D GA + G ++ + YT RL +R Sbjct: 296 ENTQASGAHVLRHSAATHLVDGGADIRSVQELLGHSSLATTQIYTH-VSMKRLAETYARA 354 Query: 339 ISS 341 Sbjct: 355 HPR 357 >gi|217961112|ref|YP_002339680.1| prophage LambdaBa03, site-specific recombinase, phage integrase family [Bacillus cereus AH187] gi|229140330|ref|ZP_04268885.1| hypothetical protein bcere0013_34290 [Bacillus cereus BDRD-ST26] gi|217063254|gb|ACJ77504.1| prophage LambdaBa03, site-specific recombinase, phage integrase family [Bacillus cereus AH187] gi|228642891|gb|EEK99167.1| hypothetical protein bcere0013_34290 [Bacillus cereus BDRD-ST26] Length = 304 Score = 115 bits (289), Expect = 8e-24, Method: Composition-based stats. Identities = 48/290 (16%), Positives = 90/290 (31%), Gaps = 24/290 (8%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESR 126 L+ +I EY + + Q+ R G + I T H++ V ++ Sbjct: 3 LEDVIEEYLYHCLAKGFTPKTMKNKRQEMKQLKRFLMDEKGISELEAINTLHLKQYVRTK 62 Query: 127 ---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE----DM 179 P S + +R F W ++EY+ N VE PK + ++ +T + + Sbjct: 63 YKEGLQPQSIVSMFKLVRAFFSWCQKEEYLKENIAKKVELPKVPKKLLKGFTIQEVSAMI 122 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------NNIFSIKTQKT 229 F ++ + L GLR + Q+++ N + Sbjct: 123 DAFSYKNYIEARNKAIVAMLSDCGLRAMEIRGLLTQNVKETTILVNGKGNKERIMFISPP 182 Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSA 286 I + + L + + +F++ ++ K + V S Sbjct: 183 LKKILIRYERLRKQYLKDKIVKTDNYFLSYTADPLSHMGIYNVIKEAGKRVEVEEVRCSP 242 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 H R F A G L G V + Y + + L K Sbjct: 243 HTFRHFFAVQCILNGIDIFTLSKLLGHSDVSTTQRYLQSLEDFELIKKAM 292 >gi|193068261|ref|ZP_03049225.1| integrase [Escherichia coli E110019] gi|192958540|gb|EDV88979.1| integrase [Escherichia coli E110019] Length = 334 Score = 115 bits (289), Expect = 8e-24, Method: Composition-based stats. Identities = 45/314 (14%), Positives = 94/314 (29%), Gaps = 10/314 (3%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 ++ G+ + R + R+ + + + ++ + TL Sbjct: 4 KKLEDGRYLLDIRPNGRKGKRVRKVFDKKSVAVATERYIMANAEKREYIQGYRDRRTLND 63 Query: 74 LIS-EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132 L+ + A R + +++ D K+ RS + PSS Sbjct: 64 LLELWWMYHGQHRRKAEEDRKQLCNIINELGADMQAVDLDKLKIIAWRSQKIAAGLKPSS 123 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 A +++ + +F R + + + + +G Sbjct: 124 ANRYMNRLSGMFTVLKRIGLWDAEHPVRGISILYVSPREMAFLSQKEVALLLDTLDGDYW 183 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252 R+A L +G R S++C+ + + +N + K G TV + + + G Sbjct: 184 RVALLC-LSTGARWSEACKLRGEQIVHNRVTFLETKNGRKRTVPISQAVCEAIKTRETGG 242 Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYG 312 +F + K ++AH +R A+ G L G Sbjct: 243 LFEVK--------YREFCLALKRVKPDLPKGQAAHVLRHTFASHFVMNGGNIIALQKILG 294 Query: 313 WKTVDQAETYTKGA 326 T+ Q Y A Sbjct: 295 HATIQQTMAYAHFA 308 >gi|228911396|ref|ZP_04075196.1| Prophage LambdaBa04, site-specific recombinase, phage integrase [Bacillus thuringiensis IBL 200] gi|228848231|gb|EEM93085.1| Prophage LambdaBa04, site-specific recombinase, phage integrase [Bacillus thuringiensis IBL 200] Length = 356 Score = 115 bits (289), Expect = 8e-24, Method: Composition-based stats. Identities = 50/362 (13%), Positives = 110/362 (30%), Gaps = 50/362 (13%) Query: 27 KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS 86 G ++ + + K Y + + ++ + K Sbjct: 2 TGKRKQKSKGGFRTKKEAQNAAANMITEIEKGIYFDDKQFS------ILDIWEK-LKPIR 54 Query: 87 LAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTS 139 A S+E I+ G + I I+S K + Sbjct: 55 KAELKITSYEKDISLVKLYILPTFGYKKIKSIKPVIIQSYYAELKEKGLSNGTISNIHRC 114 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-GSQPRLAFEF 198 R +FK AV E + N V++P+ + ++ W+ E+ +F + E + + F Sbjct: 115 FRCIFKHAVEWEILHDNIMNKVKKPREEQVEMKTWSSEECNRFLHYLKEKNKKYYMFFLL 174 Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSI---------------------KTQKTGTIITVEL 237 +Y+G+R + + + + I + ++ +I + + Sbjct: 175 AIYTGMRRGELLALTWKDIDFDNQRILVNKSLVKTEEGLFKAATKTKSSNRSISISSFVV 234 Query: 238 PDGFMKLLAMTPIGKET----------FFINNDKQKMNATQFSIWFKAKATKAGVNK-SA 286 + L F N ++ + K KAGV + Sbjct: 235 IELQTYYLYKKKEFFRWGISLNEEAYIFAGNTIHSPLHIDAPHRFLKDHYKKAGVPRIRI 294 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVDS 345 H +R AT+ AG + G ++ + Y+ + + + S++ S Sbjct: 295 HDLRHTHATLMLQAGEHPKIVQDRLGHSSIQMTLDKYSHITQN--MQQQAAENFESIIKS 352 Query: 346 DD 347 ++ Sbjct: 353 NE 354 >gi|167585124|ref|ZP_02377512.1| site-specific tyrosine recombinase XerC [Burkholderia ubonensis Bu] Length = 306 Score = 115 bits (289), Expect = 8e-24, Method: Composition-based stats. Identities = 42/288 (14%), Positives = 90/288 (31%), Gaps = 31/288 (10%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTP 130 I+ Y + L+ ++ ++ ++ + + ++ +R + + + Sbjct: 6 IAAYLSNLKHVRQLSDHTLRAYTHELGELKKLAAGRPLEALSAVDMRGAVARAHAAGLSA 65 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 S L++ R ++W ++ + NP +V PKR + + +D G+ Sbjct: 66 RSISHRLSAWRAFYRWLAQRIEMPANPVAAVRAPKRAKTLPKALSVDDATALMDAPLPGT 125 Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------GTIIT 234 + E L SGLR ++ V++ Q + + Sbjct: 126 TEGLRDHAILELLYSSGLRLAELIGLDVRYAQADGYRSAGWLDLAEAEVTVRGKGNKERK 185 Query: 235 VELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--K 284 V + + L F++ +M+ K A AG+ Sbjct: 186 VPVGRKAIDALNAWLAVRGEFVKHDPHPLFLSVRGNRMSPGVVRERVKRAALAAGIPAHV 245 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R AT + + G +V + YT D L Sbjct: 246 HPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQVYT-SLDFQHLA 292 >gi|154251910|ref|YP_001412734.1| integrase family protein [Parvibaculum lavamentivorans DS-1] gi|154155860|gb|ABS63077.1| integrase family protein [Parvibaculum lavamentivorans DS-1] Length = 326 Score = 115 bits (289), Expect = 8e-24, Method: Composition-based stats. Identities = 41/315 (13%), Positives = 84/315 (26%), Gaps = 30/315 (9%) Query: 46 AYMSALT-GSTPKREYINSPRKKPTTLKWLISEYRKS-AHWGSLAVNSRISFESYFDQII 103 A +A G P + + I + ++ + I++ + Sbjct: 2 ARPAARAIGGAPAPDDAARTIPASGDARTEIRNWYSHLMGERRMSEATLINYHRDLTRFF 61 Query: 104 RKS-----GDFDYRKITTKHIRSGVESRKHTP------SSAIQFLTSMRVLFKWAVRQEY 152 G + + +R S + L+S+R F++ R Sbjct: 62 EFLVDHLGGPATLKDLGRLELRDFRAFVSQRRKDGLQSRSLARMLSSVRSFFRFLDRTHV 121 Query: 153 VAINPCLSVERPKRKTEGIRPWTK-------EDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205 ++ ++ PK +P T ++ + G++ L GLR Sbjct: 122 LSNASATALRSPKLPHAIPKPLTAAGARELLDEAEIAHEEPWIGARDIAVLTLLYGCGLR 181 Query: 206 CSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN 265 S++ T K G V + + +D + Sbjct: 182 VSEALGLNRSEAPLKDVLRITGKGGKERVVPVLPAARMAVDDYLRLCPHGLAKDDPLFVG 241 Query: 266 ATQ-------FSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTV 316 + + G+ + H +R AT G + G ++ Sbjct: 242 SRGARLGQRQVRETMTRLRRRLGLPESATPHALRHSFATHLLAGGGDLRSIQELLGHASL 301 Query: 317 DQAETYTKGADRIRL 331 + YT D RL Sbjct: 302 STTQMYT-EVDAARL 315 >gi|304389555|ref|ZP_07371517.1| tyrosine recombinase XerD [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315656798|ref|ZP_07909685.1| tyrosine recombinase XerD [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|304327108|gb|EFL94344.1| tyrosine recombinase XerD [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315492753|gb|EFU82357.1| tyrosine recombinase XerD [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 318 Score = 115 bits (289), Expect = 8e-24, Method: Composition-based stats. Identities = 48/283 (16%), Positives = 86/283 (30%), Gaps = 33/283 (11%) Query: 78 YRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR------- 126 Y + ++ ++ + I G ++T + S + Sbjct: 20 YLDYLAVERGASPHTVAAYTRDLRRYITFLIANGVNSLDEVTLPVLESFARALEAGFGDY 79 Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 PSSA + + S+R ++A V NP + K T E++Q Sbjct: 80 AAVAPSSARRVIASVRSWHRYAYETGVVRANPTKGIAPAKVGAHLPTVLTVEEVQTLLEA 139 Query: 186 -----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD- 239 + R EFL +G R S++ V + + + G L Sbjct: 140 ASAPGDDNALRDRALLEFLYATGARISEAVNLAVDDINLDEEIPLVRLFGKGRKERLSML 199 Query: 240 -------------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG--VNK 284 LA + F+N + ++ +A A +A V Sbjct: 200 GHLAKDALEAYLVRVRPRLAEKGRSQGRVFLNTLGRPLSRQSAWAIIQAAAQRAQITVPV 259 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 H +R AT GA + G +V + YTK ++ Sbjct: 260 GPHTLRHCFATHLLQGGADVRAVQELLGHASVTTTQIYTKVSN 302 >gi|218897574|ref|YP_002445985.1| DNA integration/recombination/invertion protein [Bacillus cereus G9842] gi|218543461|gb|ACK95855.1| DNA integration/recombination/invertion protein [Bacillus cereus G9842] Length = 369 Score = 115 bits (289), Expect = 8e-24, Method: Composition-based stats. Identities = 49/366 (13%), Positives = 118/366 (32%), Gaps = 44/366 (12%) Query: 17 RHGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + G G+R + + T A + + + TL Sbjct: 7 KRGNKYCIVIDIGPDPETGKRRQKWFSGYKTKKEA-QADVAKKITELNEGTFIEPSKVTL 65 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 K ++ + + S+ ++ + ++ + +I G K+ HI+ ++ + Sbjct: 66 KDYLNHWLE-IKSMSIQKSTFAGYRAFINQHVIPSIGMVALHKLNVMHIQKCYKTAINKG 124 Query: 131 SSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + L ++ AV+Q ++ NP E PK++ I+ WT+E++++F + Sbjct: 125 ITNNSILLMHRILKSALNLAVKQNIISRNPADFAEIPKKEKTSIQTWTEEEVKKFLAHSQ 184 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--------------TGTII 233 E S+ + + + +G+R + Q + ++ + + Sbjct: 185 E-SRYHIGYLLAITTGMRLGEVLGLRWQDIDFEKHTVTINQTSGHDNKIKKTAKTNSSKR 243 Query: 234 TVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKAKATK 279 T+ +P+ + L + ++ N + + F F K Sbjct: 244 TIPVPNETIVALKKHKILINKEKLRFGSAYLDQDLINCNEFGRIIKRAHFRKSFIRATHK 303 Query: 280 AGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSR 337 G+ H +R ATI G + G + Y+ + + + Sbjct: 304 VGIKEIKFHDLRHTHATILLKQGVNPKIISERLGHTDISMTLSVYSHVLPN--MQEEAVK 361 Query: 338 RISSVV 343 + Sbjct: 362 NFGKSI 367 >gi|163742251|ref|ZP_02149639.1| site-specific tyrosine recombinase XerC [Phaeobacter gallaeciensis 2.10] gi|161384581|gb|EDQ08962.1| site-specific tyrosine recombinase XerC [Phaeobacter gallaeciensis 2.10] Length = 311 Score = 115 bits (289), Expect = 8e-24, Method: Composition-based stats. Identities = 37/290 (12%), Positives = 84/290 (28%), Gaps = 29/290 (10%) Query: 72 KWLISEYRKSAHWGSLA-VNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSG 122 + + ++ A N+ ++ + + G +I+T +R+ Sbjct: 14 RDALEQWLAGLAALQGAAENTVTAYRGDVVEFLAFMTHHFGGPQGLGALAEISTGDMRAW 73 Query: 123 VESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE-- 177 + + + T + A + L++++ + W ++ LS PK + + RP ++ Sbjct: 74 MAATRATGTGARSLARKLSAVKSFYTWLAERQGFEPTAVLSARSPKFQKKLPRPLAEDAA 133 Query: 178 -----DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 ++ + ++ L GLR S++ T K G Sbjct: 134 RAVIETVEFQSTTDWVAARDVAVVTLLYGCGLRISEALGLTGADAPLPAVLRITGKGGKE 193 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-------FSIWFKAKATKAGVNK- 284 V + + + G+ Sbjct: 194 RIVPVLSAARAAVDRYLRLCPHPQERAAPLFRGVRGGALNARLIRSAMAQARAQLGLPAS 253 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 + H +R AT +AG + G ++ + YT D L Sbjct: 254 ATPHALRHSFATHLLEAGGDLRAIQELLGHASLSTTQAYT-AVDTAHLMD 302 >gi|325204823|gb|ADZ00277.1| tyrosine recombinase XerC [Neisseria meningitidis M01-240355] Length = 301 Score = 115 bits (289), Expect = 8e-24, Method: Composition-based stats. Identities = 39/289 (13%), Positives = 94/289 (32%), Gaps = 26/289 (8%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD---YRKITTKHIRSGVESRK 127 L + Y ++ + ++ ++ +++ + T + Sbjct: 6 LAAYLDAYLENIVREGKSEHTVAAYRRDLQELLALLEEMPSANPSNCTRGDFVQALRRLS 65 Query: 128 HTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + + L+S R W V++ + +P ++ PK+ + +E + Q Sbjct: 66 GRGLGERTLARKLSSWRQYCVWLVKRGLMHADPTADIKPPKQPERIPKALPQECLNQMLD 125 Query: 185 FWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELP 238 + S + FE + SGLR S+ + + ++ V L Sbjct: 126 LPVDDSDALALRDHALFELMYGSGLRLSEIHGLDTGDVWLDEGWVRVTGKGRKQRQVPLT 185 Query: 239 DGFMKLLAMTPIGKETF------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290 ++ L ++T F + +++ Q ++ A + G + S H +R Sbjct: 186 GKSVEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLESWAAQNGDGRHISPHMMR 245 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 A+ + + G ++ + YTK L + R+ Sbjct: 246 HSYASHLLQSSRDIRAVQELLGHSSLSTTQIYTK------LDFDHIARL 288 >gi|325983587|ref|YP_004295989.1| integrase family protein [Nitrosomonas sp. AL212] gi|325533106|gb|ADZ27827.1| integrase family protein [Nitrosomonas sp. AL212] Length = 345 Score = 115 bits (289), Expect = 8e-24, Method: Composition-based stats. Identities = 42/316 (13%), Positives = 94/316 (29%), Gaps = 17/316 (5%) Query: 17 RHGKIIY-YFRKGHGRRIR-LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 + GK + F +G R+R + T + L E + + K+ T Sbjct: 5 KRGKTWWIRFTAPNGERVRCSAATEDKTQAQEFHDKLKAELWLVERLGN--KQKRTWDEA 62 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI--RSGVESRKHTPSS 132 ++ + + + + +I I + ++++ +PS+ Sbjct: 63 ACKFLLETQHK----ATHERDKEKLRWLQQFLRKKLLNEIDRMLIDHIAHTKAKETSPST 118 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 A + L +R + + A + + +R T ++ Q Sbjct: 119 ANRHLALIRAILRKACYDWE-WTDKVPKIRLFPEPKHRVRWLTPGQVKMLLKELPVHQQD 177 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251 + F L +GLR S+ + + LA+ Sbjct: 178 MVIFA--LSTGLRQSNVINLEWSQVDLERKAAWVHPDQAKARKAIHVPLNSIALAVLFRQ 235 Query: 252 KETFFINNDKQKMNATQF--SIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELM 308 K + + + ++ +AG++ H +R A+ A G + L Sbjct: 236 SGKHPSRVFTYKDRSISWANTSAWRNALKRAGIDNFRWHDLRHTWASWLAQQGTPMNVLQ 295 Query: 309 ATYGWKTVDQAETYTK 324 GW++ + Y Sbjct: 296 ELGGWESEEMVRRYAH 311 >gi|184201180|ref|YP_001855387.1| tyrosine recombinase XerD [Kocuria rhizophila DC2201] gi|183581410|dbj|BAG29881.1| tyrosine recombinase XerD [Kocuria rhizophila DC2201] Length = 304 Score = 115 bits (289), Expect = 8e-24, Method: Composition-based stats. Identities = 41/288 (14%), Positives = 86/288 (29%), Gaps = 36/288 (12%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGVESRKH 128 ++ Y LA N+ ++ + ++ R IT H+R+ V + Sbjct: 1 MARYLDHLVVERGLAANTVSAYRRDLARYLQHLTATAAHVRVPRDITADHVRAFVRRIRE 60 Query: 129 --------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + S+ + L ++R + V + V + V P + +++ Sbjct: 61 GDAAHPALSARSSARVLAAVRGAHAFWVTESSVDTDVASRVSPPMPPQRLPKAIGVTEVE 120 Query: 181 QFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-----SIKTQKTGT 231 + + + R E L +G R S++ V L T K Sbjct: 121 NLLAAPDPDTPAGLRARAFLELLYATGARISEAVALDVDDLAGLHDEDLALIRVTGKGAK 180 Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDK-----------QKMNATQFSIWFKAKATKA 280 V + + L I + + +++ K A Sbjct: 181 QRLVPVGSFAVAALDRYLIRARPELARHGRGSPAVFLNARGTRISRQTAWNMVKDAARTI 240 Query: 281 --GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 + H +R AT + GA + G ++ + YT+ + Sbjct: 241 HQEERITPHTLRHSFATHLLEGGADLRVVQELLGHASLATTQIYTRVS 288 >gi|192288937|ref|YP_001989542.1| tyrosine recombinase XerD [Rhodopseudomonas palustris TIE-1] gi|192282686|gb|ACE99066.1| tyrosine recombinase XerD [Rhodopseudomonas palustris TIE-1] Length = 339 Score = 115 bits (289), Expect = 8e-24, Method: Composition-based stats. Identities = 52/316 (16%), Positives = 100/316 (31%), Gaps = 37/316 (11%) Query: 51 LTGSTPKREYINSP-RKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD 108 T + P+ E +P R + L + + N+ ++ + Sbjct: 9 RTAALPEPEAQAAPLRPASYSDAGLTELFLDMIAAEQGASANTLDAYRRDLADLSHFLSR 68 Query: 109 FDYR--KITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163 T +RS + + SS + L+++R LF++ + + A +P + Sbjct: 69 RRLSIGSADTAALRSYLADLDNRGFATSSVARRLSALRHLFRFLLSERIRADDPAAILAG 128 Query: 164 PKRKTEGIRPWTKE-------DMQQFKSFWSEGSQPRLAFEFLLY-----SGLRCSDSCR 211 PKR + + +Q G++ R A L +GLR S+ Sbjct: 129 PKRGRSLPKVLSIADVDRLLACARQEIDAAEGGARLRAARLNCLLEVLYATGLRVSELVS 188 Query: 212 AGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT--------------PIGKETFF 256 + + + I + V L G + +A P K F Sbjct: 189 LPLSAARRDARMIVVRGKGDKERLVPLNAGAKQAMARYLEEVAVATKETKGAPASKWLFP 248 Query: 257 INNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGW 313 + + F+ K A +AG++ S H +R A+ GA + G Sbjct: 249 SFGESGYLTRQHFARDLKDLAARAGLSPRLVSPHVLRHAFASHLLHNGADLRIVQTLLGH 308 Query: 314 KTVDQAETYTKGADRI 329 + + YT + Sbjct: 309 SDISTTQIYTHVVEER 324 >gi|150388279|ref|YP_001318328.1| phage integrase domain/SAM domain-containing protein [Alkaliphilus metalliredigens QYMF] gi|150389751|ref|YP_001319800.1| phage integrase domain/SAM domain-containing protein [Alkaliphilus metalliredigens QYMF] gi|150392024|ref|YP_001322073.1| phage integrase domain/SAM domain-containing protein [Alkaliphilus metalliredigens QYMF] gi|149948141|gb|ABR46669.1| phage integrase domain protein SAM domain protein [Alkaliphilus metalliredigens QYMF] gi|149949613|gb|ABR48141.1| phage integrase domain protein SAM domain protein [Alkaliphilus metalliredigens QYMF] gi|149951886|gb|ABR50414.1| phage integrase domain protein SAM domain protein [Alkaliphilus metalliredigens QYMF] Length = 332 Score = 115 bits (289), Expect = 8e-24, Method: Composition-based stats. Identities = 42/262 (16%), Positives = 85/262 (32%), Gaps = 14/262 (5%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAI 134 Y S LA+ + + ++ + +TT IR + S T + Sbjct: 60 YLASKKIDGLAMRTLEGYSRNLNRFA-YYMRKNVEDVTTMDIRMYLASYAKTGVKNGTIG 118 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194 +R F+W +EY+ +P ++ K + + T E+M+ + + + Sbjct: 119 TETDILRGFFRWLEDEEYINKSPLRKIKSLKPEKRIRKALTNEEMEI-LRDGCKTYRQKA 177 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMTPIGKE 253 EF +G R + + K TV + + + + Sbjct: 178 LLEFFYSTGCRLEEVENVKKYDIDWQRLQLKVIGKGNKERTVYINAKAKVHIQKYLMARL 237 Query: 254 ------TFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAH 305 N +K+ F +G+ KS H +R AT ++GA Sbjct: 238 DEEEALFVTERNPVKKLGRRSIEREFDKIEKTSGIKKSIYPHLIRHTMATHLLNSGADLG 297 Query: 306 ELMATYGWKTVDQAETYTKGAD 327 + A G + + Y + ++ Sbjct: 298 TVQAILGHEDASITQIYAQISN 319 >gi|182420027|ref|ZP_02951261.1| integrase [Clostridium butyricum 5521] gi|182376064|gb|EDT73651.1| integrase [Clostridium butyricum 5521] Length = 380 Score = 115 bits (289), Expect = 8e-24, Method: Composition-based stats. Identities = 54/352 (15%), Positives = 111/352 (31%), Gaps = 48/352 (13%) Query: 24 YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK-SA 82 Y G RR+ A+ A K SP K I ++ Sbjct: 20 YDNTGKRRRVIKQGFRTKKLAEAF--ATQILDKKNHGFVSPTDSDLLFKNFIMKWYDMHT 77 Query: 83 HWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE----SRKHTPSSAIQFL 137 L+VN+R + S + +I G++ + I+ +++ + P + ++L Sbjct: 78 TSLKLSVNTRNDYLSRINTNLIPLLGEYKIKDISIDVVQNFYNTLINEKHLKPVTVKKYL 137 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197 + K+A ++ + P +++ K + I W ++++ F ++ + + Sbjct: 138 DILSSCLKYAQSKDLIYKLPTNYIQKVKIQKPKIEYWNQDEVNFFLNYI-KNTYLYTPIF 196 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------------GTIITVELPD 239 + +GLR + C + I + + +P Sbjct: 197 IDVLTGLRIGELCGLRWCDVDLQNGIITVNHQLIHDKRLKVLMLTDLKTSSSHRRITIPK 256 Query: 240 GFMKLL-----AMTPIGKETFFINNDKQKMNATQFSIWF-KAKAT------KAGVNK--- 284 + L + ++ + K S+ F K A K +K Sbjct: 257 ILIDYLKELKADRSATDNGYVVLDRNDYKYTPRSLSMNFTKKVAKFSDSKEKHKDDKNYM 316 Query: 285 -----SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330 S HG+R AT+ G + G + TYT D ++ Sbjct: 317 QLKQISFHGLRHTHATLLIANGENVKVVSERLGHTDIRMTLNTYTHVLDSMK 368 >gi|86158112|ref|YP_464897.1| tyrosine recombinase XerD subunit [Anaeromyxobacter dehalogenans 2CP-C] gi|85774623|gb|ABC81460.1| tyrosine recombinase XerD subunit [Anaeromyxobacter dehalogenans 2CP-C] Length = 314 Score = 115 bits (289), Expect = 8e-24, Method: Composition-based stats. Identities = 40/279 (14%), Positives = 88/279 (31%), Gaps = 24/279 (8%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVE-- 124 L+ + + LA NS ++ + + G + ++ I++ + Sbjct: 20 LEPALDLFLAHVRVEKGLAENSVEAYGRDLRRYLEHLDELGVDAWERVGRSEIQAHLAEL 79 Query: 125 -SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 R +P S + L+++R L + + + +P +E P+ + +++ + Sbjct: 80 VRRGLSPRSQARALSAIRSLHRLLAAERVTSADPSDEIESPRPGRRLPGLLSHDEVDRLL 139 Query: 184 SFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELP 238 + G + R E L +GLR S+ + + + + V + Sbjct: 140 AAPDVRSAAGIRDRAMLELLYATGLRVSELVSLQLNDVNLETRVLVARGKGDKERIVPVG 199 Query: 239 DGFMKLLAM----------TPIGKETFFINNDKQKMNATQFSIWF--KAKATKAGVNKSA 286 + + F+ +M F+ A+ S Sbjct: 200 APAADAVKAYLAVARERLLHGRRSKDLFVTPRGGRMTRQGFAKILDRCARRAGIRRRISP 259 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 H +R AT + GA + G V + YT Sbjct: 260 HKLRHSFATHLLEGGADLRAVQEMLGHADVSTTQIYTHV 298 >gi|317486704|ref|ZP_07945521.1| phage integrase [Bilophila wadsworthia 3_1_6] gi|316922087|gb|EFV43356.1| phage integrase [Bilophila wadsworthia 3_1_6] Length = 339 Score = 115 bits (289), Expect = 8e-24, Method: Composition-based stats. Identities = 45/295 (15%), Positives = 92/295 (31%), Gaps = 45/295 (15%) Query: 75 ISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESRKH 128 + ++ + + ++ + Q ++ H + H Sbjct: 15 VEQFLTWMTDQKGFSPATISAYRTDLLQFEEWLHREQHSLARPGELEKYHFQDYSAHLFH 74 Query: 129 TP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-- 183 SS + L+++R LF++ ++ + + NP V PKR+ + M Sbjct: 75 EGQARSSIGRKLSALRSLFRYLMKMKKIDKNPAKLVRNPKRELRHPTALNVDQMFTLLDE 134 Query: 184 -----------------------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220 + ++ E L SGLR S++ V + Sbjct: 135 ASVESGGAAGLDGSRQAEQTVTDREHAGHTRDLALAELLYGSGLRISEALDLDVDDVDPA 194 Query: 221 IFSIKTQKT-GTIITVELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSI 271 I+ L D ++ L + P ++ F+ N +++N Q + Sbjct: 195 SGFIRVIGKGSKERIAPLSDTSVRALFLWLRVRALIAPPAEKALFVGNRGKRLNRRQAAR 254 Query: 272 WFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 AG+ S H +R AT + GA + G ++ + YT Sbjct: 255 ILDEIRKSAGLPQHLSPHTLRHTFATHMLENGADMRSVQELLGHASLSTTQRYTH 309 >gi|193214435|ref|YP_001995634.1| integrase family protein [Chloroherpeton thalassium ATCC 35110] gi|193087912|gb|ACF13187.1| integrase family protein [Chloroherpeton thalassium ATCC 35110] Length = 336 Score = 115 bits (289), Expect = 8e-24, Method: Composition-based stats. Identities = 46/320 (14%), Positives = 87/320 (27%), Gaps = 57/320 (17%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSG---------DFDYRKITTKHIRSGVE 124 ++ + K +++ + ++ Q + D + T IR + Sbjct: 14 LTAFLKYLANERNMSAYTVTAYRKDLSQFLEFLKKEFELPSSQDISLADVETSTIRLFLG 73 Query: 125 SRKHTPS---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT------ 175 S + L S++ FK+ V ++ +P +V PK K Sbjct: 74 ELLDAGYQSKSIGRKLASVKSFFKFLVYINHLPASPAANVTTPKAKKTLPTFLNETQTQT 133 Query: 176 --------------------KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215 K + + ++ R E GLR ++ + Sbjct: 134 LFDEILDHFNEAFYHDNRAKKHEKVNTLEWDFRYNRDRAILEMFYSCGLRLAELIGLNIM 193 Query: 216 HLQNNI-FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ------------ 262 L F K + L + K L K+ FF Sbjct: 194 ELDFQNGFVKVLGKGRKQRIIPLGESAQKTLKNYLEIKKKFFEMKRSNVLEREAVFVTEK 253 Query: 263 --KMNATQFSIWFKAKA--TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 ++ K KS H +R AT + GA + G + Sbjct: 254 GKRVYPVLVQRLVKKYLSPVTEQKKKSPHVLRHTFATHLLNNGADLRSVSEMLGHSNLST 313 Query: 319 AETYTK-GADRIRLGIKNSR 337 E YT +R++ + + Sbjct: 314 TEIYTHISFERLKQVYQQAH 333 >gi|190893664|ref|YP_001980206.1| tyrosine site-specific integrase/recombinase protein [Rhizobium etli CIAT 652] gi|190698943|gb|ACE93028.1| tyrosine site-specific integrase/recombinase protein [Rhizobium etli CIAT 652] Length = 383 Score = 115 bits (289), Expect = 8e-24, Method: Composition-based stats. Identities = 43/290 (14%), Positives = 83/290 (28%), Gaps = 35/290 (12%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRKH 128 + + + A N+ S+E D I + + + Sbjct: 75 VESFLEMMSAERGAAANTLQSYERDLDDIRSFLNGRSIRLTEAASADLSAYLASLARQGF 134 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 PSS + L +MR +K+ + +P ++ PK+ + E++ + S Sbjct: 135 KPSSQARRLAAMRQFYKFLYAEGIRTDDPTGVLDAPKKGRPLPKTMGVEEVSRLLSQAQA 194 Query: 189 GSQP-----------RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVE 236 + E L +G+R S+ + L + K V Sbjct: 195 EADDPAPGQLQRLRMLALLELLYATGMRVSELVSLPARVLDQEGRFLMIRGKGNKERLVP 254 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNA--------------TQFSIWFKAKATKAGV 282 L +K L + + + F+ K A +AG+ Sbjct: 255 LSQSAIKALKSYGRLLAAENAAAKEPQESPFLFSAASKEGYLPRQVFARDLKNLAIRAGL 314 Query: 283 N---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 S H +R A+ GA + G + + YT + Sbjct: 315 TPSLISPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEER 364 >gi|146300388|ref|YP_001194979.1| phage integrase family protein [Flavobacterium johnsoniae UW101] gi|146154806|gb|ABQ05660.1| phage integrase family protein [Flavobacterium johnsoniae UW101] Length = 419 Score = 115 bits (289), Expect = 8e-24, Method: Composition-based stats. Identities = 40/284 (14%), Positives = 86/284 (30%), Gaps = 17/284 (5%) Query: 77 EYRKSAHWGSLAVNSRI---SFESYFDQIIRKS-GDFDYRKITTKHIRSGVESRKHTP-- 130 Y S A +S+ ++E + + S G + +I ++ P Sbjct: 132 RYIASVAAKRHARSSKSIMINWERTIEFLKSYSKGRLVFSQIDSRMAEDFKLFLLAAPLG 191 Query: 131 ---------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 ++A ++ + + K A Y+ ++ ++ + T +++ Sbjct: 192 GGKKGILSRNTAARYFSIFKAALKQAFIDGYLTVDLSSKIKGIPEQESRREYLTIKELNV 251 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 E + A F +GLR SD + + + K T Sbjct: 252 LAEMPCEKDVLKRAALFSALTGLRHSDIQKLRWKEISLEDDMAKLHFTQKKTRGVEYMPI 311 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 + + + + S K AG+ K + H R AT+ Sbjct: 312 SEQALQLCGEPRLPGQLVFEDLPDPSWISRPLKKWVESAGIKKNITFHCFRHTFATLQLS 371 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343 +G + + G V + Y K D + + ++ S+ Sbjct: 372 SGTDIYTVSKMLGHTNVKTTQIYAKVIDEKKNRASQAIQLESLK 415 >gi|325661290|ref|ZP_08149916.1| hypothetical protein HMPREF0490_00649 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472239|gb|EGC75451.1| hypothetical protein HMPREF0490_00649 [Lachnospiraceae bacterium 4_1_37FAA] Length = 302 Score = 115 bits (289), Expect = 8e-24, Method: Composition-based stats. Identities = 44/286 (15%), Positives = 93/286 (32%), Gaps = 26/286 (9%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFE----SYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 L+ ++ E+ L+ + + +F I ++ D KI I + + Sbjct: 3 LEDVLEEFIFDCKLRRLSEKTIKGYRNNNLRFFTFIKKEYDIDDLGKIQGNVINAYIAYL 62 Query: 127 ---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 PS + S R +K+ ++YV+ NP V K+ I+ + ++++ Sbjct: 63 TSIGRKPSYINGIIKSFRAFYKYCENEKYVSRNPMNKVNFQKQGKTLIKTFNDKEVRDMV 122 Query: 184 SFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239 ++ + +L LL +G+R S+ C + ++ + I+ + + P Sbjct: 123 RYYGSVRYLDIRDKLIMVMLLDTGIRNSELCGLLISDIRYDHILIRGKGNKERVVPISPI 182 Query: 240 GFMKLLAMTPIGKETFFINNDKQ-----------KMNATQFSIWFKAKATKAG----VNK 284 L+ + Q K+ A + Sbjct: 183 LNKILIKYKRVRNLYIKDKFAYQIEYLFLSQKGKKLTPETVERVVLECAEACKVRKTIRC 242 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 S H R + A G + L G ++ + Y + D R Sbjct: 243 SPHTCRHYFAQAQLKNGCDLYTLSRLLGHSNINITKIYLQSMDDER 288 >gi|258517018|ref|YP_003193240.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771] gi|257780723|gb|ACV64617.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771] Length = 321 Score = 115 bits (289), Expect = 8e-24, Method: Composition-based stats. Identities = 42/293 (14%), Positives = 85/293 (29%), Gaps = 16/293 (5%) Query: 50 ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF 109 A + R + + + + E+ + + + + R D Sbjct: 4 AKKKTRLVRIVEQEELTRSVSWEEALQEFLLLKKAEGKSERTIKDYGYHIKHFFRLYPDT 63 Query: 110 DYRK--ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167 D I + I + + P+ L M+ F W V++ + NP +R K Sbjct: 64 DLADAGILKRRIIDYMAE-EVKPAYYNNKLVYMKTFFNWCVKERVLIENPVKEFKRRKAD 122 Query: 168 TEGIRP---WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN---- 220 ++ K+ + G + L SG+R ++ + + Sbjct: 123 ERIVQFDLELLKKLLAIPDQSTYPGLRDYALLLLQLDSGIRPKEALSLLISDVNFKSLEV 182 Query: 221 IFSIKTQKTGTIITVELPDGFMKLLA------MTPIGKETFFINNDKQKMNATQFSIWFK 274 + KT T+ + K + + F + + KM + Sbjct: 183 YIRAENAKTRVSRTLPISPITAKAIQKLINVRPSDWNDVPIFCSCEGNKMLGNTWYKRLS 242 Query: 275 AKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 K G + +R A G + L T G ++ + Y AD Sbjct: 243 KYGEKLGTKLYPYQLRHTFALEFLRNGGNSFALQKTLGHADLNMTKRYVSLAD 295 >gi|86747659|ref|YP_484155.1| tyrosine recombinase XerD [Rhodopseudomonas palustris HaA2] gi|86570687|gb|ABD05244.1| tyrosine recombinase XerD subunit [Rhodopseudomonas palustris HaA2] Length = 347 Score = 115 bits (289), Expect = 8e-24, Method: Composition-based stats. Identities = 44/331 (13%), Positives = 94/331 (28%), Gaps = 42/331 (12%) Query: 53 GSTPKREYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD- 110 + R + L + + N+ ++ + G Sbjct: 16 ATAAGEREAAPLRPTSYSDAGLSELFLDMIAAEQGASANTLDAYRRDLADLSHYLGRRRK 75 Query: 111 -YRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 T+ +R + +S + L+++R LF++ + + +P + PKR Sbjct: 76 SIASADTEALRGYLADLDTRGFASTSVARRLSALRHLFRFLLSERIRVDDPAAILSGPKR 135 Query: 167 KTEGIRPWTKEDMQQFKSFWS------------EGSQPRLAFEFLLYSGLRCSDSCR-AG 213 + + D+ + ++ E L +GLR S+ Sbjct: 136 GRGLPKVLSIADVDRLLGCARQEADAAEGAAGLRAARLYCLLEVLYATGLRVSELVALPR 195 Query: 214 VQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT-------------------PIGKET 254 + + K V L + P K Sbjct: 196 TAARGDARMIVVRGKGDKERLVPLNGSSKAAMTRYLATAAAAEKAAAGGKKTAAPASKWL 255 Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATY 311 F + + F+ K A +AG+ S H +R A+ GA + Sbjct: 256 FPSFGESGHLTRQHFARDLKELAARAGLPPRLVSPHVLRHAFASHLLHNGADLRIVQTLL 315 Query: 312 GWKTVDQAETYTKGA-DRIRLGIKNSRRISS 341 G + + YT DR++ +++ ++ Sbjct: 316 GHSDISTTQIYTHVVEDRLKSLVRDLHPLAE 346 >gi|89068929|ref|ZP_01156311.1| tyrosine recombinase XerD [Oceanicola granulosus HTCC2516] gi|89045510|gb|EAR51574.1| tyrosine recombinase XerD [Oceanicola granulosus HTCC2516] Length = 315 Score = 115 bits (289), Expect = 8e-24, Method: Composition-based stats. Identities = 43/290 (14%), Positives = 94/290 (32%), Gaps = 30/290 (10%) Query: 74 LISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSG---VESRK 127 I + ++ A N+++++ + H+ + E+ Sbjct: 11 WIQAFLEAQAAELDAATNTQLAYARDLKDFAAWLERRPAHFADAAQSHVEAYLIDCEAIG 70 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 ++ + L++++ L+++A + + A NP + + P R+ + + E++ + + Sbjct: 71 LARATRARRLSAIKQLYRFAFEEGWRADNPAIRIAGPGREKRLPKTLSVEEVDRLLAAAR 130 Query: 188 EGSQPRLAFEFL----LYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFM 242 + + L +G+R S+ V + + + K G V L G Sbjct: 131 TTPRDAVRNTCLVELLYATGMRVSELVSLPVAATRGDPRMLLVRGKGGKERMVPLSQGAR 190 Query: 243 KLLAMT----------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---N 283 +A + F + + +F K A GV Sbjct: 191 AAVAEWLVARDAAEAAAQARGKAASRFLFPSHGKDGHLTRHRFFTLIKEIAVLGGVSPEK 250 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 + H +R AT + GA + G V E YT D + Sbjct: 251 VTPHTLRHAFATHLLEGGADLRSIQTLLGHADVGTTEIYTHVLDARLRAL 300 >gi|110802806|ref|YP_698501.1| site-specific tyrosine recombinase XerC [Clostridium perfringens SM101] gi|110683307|gb|ABG86677.1| site-specific recombinase, phage integrase family [Clostridium perfringens SM101] Length = 450 Score = 115 bits (289), Expect = 8e-24, Method: Composition-based stats. Identities = 44/303 (14%), Positives = 99/303 (32%), Gaps = 50/303 (16%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKS-----------------------GDFDYRKI 114 Y ++ SL N+ + + GD + I Sbjct: 142 YLENVKGKSL--NTAKGYSVDLGLFFKFLKVYKGLENNIELEKIEEVEISDLGDNFIKDI 199 Query: 115 TTKHIRSGVES----RKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTE 169 T I + + R ++ + + + +++ FK+ + + + NP + +E PK Sbjct: 200 TLSDIYAFLAFLEKVRNNSAYARARKVATLKSFFKFLNSKIKLIDENPTVELESPKINKR 259 Query: 170 GIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225 T + + ++ + + L G+R S+ C ++ ++ + +I Sbjct: 260 HPVYLTLDQSITVLNSMNKSNKNYYRDYCILTLFLNCGMRLSELCNIEIEKIKGDTLTII 319 Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKE----------TFFINNDKQKMNATQFSIWFKA 275 + TV L + + + + F+++ + +N I K Sbjct: 320 GKGN-KERTVYLNEASIAAIENYLKNRNDSKATEEAKKYLFLSSKYRPINKRSVEILVKK 378 Query: 276 KATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADR-IR 330 AG + H +R +AT+ G L G + + + YT D +R Sbjct: 379 HIENAGFKDQKYTPHKLRHTAATLMYKYGNVDIRSLQNILGHENISTTQIYTHVDDETLR 438 Query: 331 LGI 333 + Sbjct: 439 KAV 441 >gi|238760589|ref|ZP_04621720.1| Integrase [Yersinia aldovae ATCC 35236] gi|238701208|gb|EEP93794.1| Integrase [Yersinia aldovae ATCC 35236] Length = 345 Score = 115 bits (289), Expect = 8e-24, Method: Composition-based stats. Identities = 47/354 (13%), Positives = 93/354 (26%), Gaps = 38/354 (10%) Query: 14 ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + +GK + Y +R+R + + L L Sbjct: 4 RKLPNGKWVCDFYSDGRDSKRVRKTFVTRGEALRFEREQLAQRGDLDIDYTLAETAAQRL 63 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----- 126 K L+S++ + H SL+ + + + GD + + R Sbjct: 64 KTLVSQWYE-LHGRSLSDG--KARLDKLNILCDNLGDPAVADFDREVFAKYRKQRLAGEF 120 Query: 127 ----------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 ++ + +R +F R + L R R++E + Sbjct: 121 SRKPKHGIVKPPKEATVNREHAYLRAVFNELKRLGHWNHANPLDGVRLFRESENELTFLY 180 Query: 177 EDMQQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233 ED + + S + + L +G R S++ + + N + K+ Sbjct: 181 EDDIKRLLHECDNSSNKDLGIIVRICLATGARWSEAEQLRQAQVMPNKITYINTKSKKNR 240 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFS 293 TV + KL+ F + H +R Sbjct: 241 TVPISTELHKLIPKIKGRLFGNA---------YDAFGQAIDRAKLVLPTGQLTHVLRHTF 291 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347 A+ G L G T+ Y+ + S+ D Sbjct: 292 ASHFMMNGGNILVLQQILGHSTIQMTMRYSH------FAPDHLEAAVSLNPYDR 339 >gi|222094274|ref|YP_002528333.1| site-specific integrase/recombinase [Bacillus cereus Q1] gi|229042377|ref|ZP_04190125.1| Integrase/recombinase [Bacillus cereus AH676] gi|221238331|gb|ACM11041.1| site-specific integrase/recombinase [Bacillus cereus Q1] gi|228726924|gb|EEL78133.1| Integrase/recombinase [Bacillus cereus AH676] Length = 330 Score = 115 bits (289), Expect = 8e-24, Method: Composition-based stats. Identities = 43/303 (14%), Positives = 90/303 (29%), Gaps = 26/303 (8%) Query: 46 AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK 105 A + + T I+ + K +L + + + + Sbjct: 2 ARRKNTLDESELAVIKKQSKSYVETFNEAITLFVKDCELRNLRPFTIKYYLNELQAFLNL 61 Query: 106 SGDFDYR------------KITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYV 153 + + + I R S L ++R + + +Q+++ Sbjct: 62 LTEQEIDVSILKPYNMTEEHVKENVILYMKNYRGIKVVSINTRLRALRAFYNFLYKQKHI 121 Query: 154 AINPCLSVERPKRKTEGIRPWTKED----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209 NP +++ K + I ++KE Q G + +L +G+R ++ Sbjct: 122 PRNPMENIKLLKDRKRIIPTFSKEQLNKLFHQPNLRTFTGVRDYTIMMLMLETGIRINEL 181 Query: 210 CRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAMTPIGKETF-----FINNDKQ 262 V+ ++ I+ K+ V + L + F+ D Sbjct: 182 VGLSVKDIRWEDSLLVIRNAKSYRERQVPIQKDMKSQLKKYIAIRGYVESNALFVTVDGT 241 Query: 263 KMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 ++ A + S H R A +S GA EL A G ++ Sbjct: 242 RLTRRGIQQRISIYGNMAQIKDVRCSPHTFRHTFAKLSVQQGANIFELQAILGHTNMEIV 301 Query: 320 ETY 322 +TY Sbjct: 302 KTY 304 >gi|326403661|ref|YP_004283743.1| tyrosine recombinase XerD [Acidiphilium multivorum AIU301] gi|325050523|dbj|BAJ80861.1| tyrosine recombinase XerD [Acidiphilium multivorum AIU301] Length = 320 Score = 115 bits (289), Expect = 8e-24, Method: Composition-based stats. Identities = 44/304 (14%), Positives = 89/304 (29%), Gaps = 30/304 (9%) Query: 66 KKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSG 122 K L+ I + +S A N+ +++++ + + Sbjct: 14 KNTMALERHIEAFLESMVAERGAARNTILAYQADLADFAAFCASRGHGPAEADAASVADY 73 Query: 123 VESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + SA + L+S+R ++ +R A +P PK + ++ ++ Sbjct: 74 LGGLATAGLSARTQARRLSSLRQFQRFLLRDGQRADDPTALTSSPKLARTLPKTISEAEV 133 Query: 180 QQFKSFW-----SEGSQPRLAFEFLLYSGLRCS-------DSCRAGVQHLQNNIFSIKTQ 227 + G E L +G+R S ++ L + + Sbjct: 134 DALLTAAAAMPGQAGRVAEAGLEILYATGMRISELLVLPANALSTDASALLIKGKGGRER 193 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---K 284 ++ + + F M F+ K A AG++ Sbjct: 194 IVPLSAAARDAAARLREMNRKRPSRHLFPGRRMGFPMTRQAFARQLKRVAVMAGIHPARV 253 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 S H +R AT GA L G + + YT + R+ +V+ Sbjct: 254 SPHSLRHAFATHLLARGADLRSLQTLLGHADISTTQIYTHVL---------AERLQKLVE 304 Query: 345 SDDP 348 P Sbjct: 305 EHHP 308 >gi|169830964|ref|YP_001716946.1| phage integrase family protein [Candidatus Desulforudis audaxviator MP104C] gi|169637808|gb|ACA59314.1| phage integrase family protein [Candidatus Desulforudis audaxviator MP104C] Length = 283 Score = 115 bits (289), Expect = 8e-24, Method: Composition-based stats. Identities = 47/278 (16%), Positives = 90/278 (32%), Gaps = 18/278 (6%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRSGVESRKHT 129 + L+V + ++ + + + R + ++ Sbjct: 4 FLDHLKARGLSVQTVGTYAAAVRAFAKWWEGTGGEAFDPASVSSLDVADYRRHLLNKNRK 63 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 P++ L ++ F WAV I+P V R + R T+ ++ + Sbjct: 64 PATVNLHLDALSSFFSWAVSTGLALIDPTEGVRRVPGQKSSPRWLTRRELGALVRAVQKH 123 Query: 190 --SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMK 243 S+ R LL++GLR S++ VQ +++ K V L K Sbjct: 124 GASRDRALVALLLHAGLRVSEAVSLKVQDAVIRERSGHVAVRRGKGEKYREVPLNATARK 183 Query: 244 LLAMT---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADA 300 ++ G E F + M K A AGV + H +R + DA Sbjct: 184 MIQEWLDGHPGGEYLFPGRNGGPMTPRAVQKRLKELARLAGVEVTPHKLRHTFCKMLVDA 243 Query: 301 GATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSR 337 G + + G ++ YT+ G + ++ Sbjct: 244 GESLDRVAVLAGHANLNTTARYTRPGVQDLERAVEKLA 281 >gi|289667446|ref|ZP_06488521.1| site-specific tyrosine recombinase XerC [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 305 Score = 115 bits (288), Expect = 8e-24, Method: Composition-based stats. Identities = 41/286 (14%), Positives = 92/286 (32%), Gaps = 29/286 (10%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD-------------FDYRKITTKHIR 120 + E+ ++ ++ ++ ++ + + D ++ + H+R Sbjct: 4 VDEFLSYLQVERQVSAHTLDAYRRDLAALVAWTAEHNTEDGAQQTATPLDTAQLDSAHLR 63 Query: 121 SGVE---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 V R +P S + L++ R + W ++ +A +P ++ PK + + + Sbjct: 64 QFVAAEHRRGLSPKSLQRRLSACRSYYAWLLKHGRIASSPAAAMRAPKSPRKLPQVLDAD 123 Query: 178 DMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTII 233 + + G + R E SGLR S+ C + L + + K Sbjct: 124 EAVRLVEVPTDAPLGLRDRALLELFYSSGLRLSELCALRWRDLDLDSGLVMVLGKGSKQR 183 Query: 234 TVELPDGFMKLLAMTPIG-----KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 V + + L F ++ I K A + G+ + Sbjct: 184 LVPVGSHAIAALREWLRDSGASADTHVFPGRAGGAISQRAVQIRIKQLALRQGMFKDVHP 243 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R A+ ++ + G + + YT D L Sbjct: 244 HMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTH-LDFQHLA 288 >gi|257892241|ref|ZP_05671894.1| phage integrase [Enterococcus faecium 1,231,408] gi|257828620|gb|EEV55227.1| phage integrase [Enterococcus faecium 1,231,408] Length = 223 Score = 115 bits (288), Expect = 8e-24, Method: Composition-based stats. Identities = 32/211 (15%), Positives = 73/211 (34%), Gaps = 17/211 (8%) Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQ 191 ++S+R ++ ++ +P ++ PK+ + T ++++ G + Sbjct: 1 MISSLRRFHQFLRQERITDHDPMQHIDTPKKAQKLPSTLTLTEVEKLIEAPDTTKTLGIR 60 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLAMT-- 248 R E + +G+R S+ + L ++ K + L D ++ L Sbjct: 61 DRAILEVMYATGMRVSELIGLKLGDLHLSLGLVQTVGKGDKERIIPLGDYAIQWLERYLD 120 Query: 249 --------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISA 298 + F+NN + ++ K +AG+ + H +R AT Sbjct: 121 EARPLLVKDASEMHVFVNNHGKGLSRQGIWKNLKQLVREAGIYKEVTPHTLRHSFATHLL 180 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRI 329 + GA + G + + YT + Sbjct: 181 ENGADLRTVQELLGHADISTTQIYTHITKKR 211 >gi|229015121|ref|ZP_04172177.1| Integrase/recombinase [Bacillus mycoides DSM 2048] gi|228746174|gb|EEL96121.1| Integrase/recombinase [Bacillus mycoides DSM 2048] Length = 330 Score = 115 bits (288), Expect = 8e-24, Method: Composition-based stats. Identities = 43/303 (14%), Positives = 90/303 (29%), Gaps = 26/303 (8%) Query: 46 AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK 105 A + + T I+ + K +L + + + + Sbjct: 2 ARRKNTLDESELAVIKKQSKSYVETFDEAITLFVKDCELRNLRPFTIKYYLNELQAFLNL 61 Query: 106 SGDFDYR------------KITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYV 153 + + + I R S L ++R + + +Q+++ Sbjct: 62 LTEQEIDVSILKPYNMTEEHVKENVILYMKNYRGIKVVSINTRLRALRAFYNFLYKQKHI 121 Query: 154 AINPCLSVERPKRKTEGIRPWTKED----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209 NP +++ K + I ++KE +Q G + +L +G+R ++ Sbjct: 122 PRNPMENIKLLKDRKRIIPTFSKEQLNKLFRQPNLRTFTGVRDYTIMMLMLETGIRINEL 181 Query: 210 CRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAMTPIGKETF-----FINNDKQ 262 V+ ++ I+ K+ V + L + F+ D Sbjct: 182 VGLSVKDIRWEDSLLVIRNAKSYRERQVPIQKDMKSQLKKYIAIRGYVESSALFVTVDGT 241 Query: 263 KMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 ++ A + S H R A +S GA EL A G ++ Sbjct: 242 RLTRRGIQQRISIYGNMAQIKDVRCSPHTFRHTFAKLSVQQGANIFELQAILGHTNMEIV 301 Query: 320 ETY 322 TY Sbjct: 302 RTY 304 >gi|149908948|ref|ZP_01897607.1| site-specific recombinase, phage integrase family [Moritella sp. PE36] gi|149807959|gb|EDM67902.1| site-specific recombinase, phage integrase family [Moritella sp. PE36] Length = 288 Score = 115 bits (288), Expect = 8e-24, Method: Composition-based stats. Identities = 41/290 (14%), Positives = 92/290 (31%), Gaps = 18/290 (6%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 + L+ ++ + + +R S+ +Q+ + G I+ K + Sbjct: 2 RQLLQQFNEEITLRGYSERTRNSYRYAINQLYKYFGQ-PLDTISDKQLEMYFRYLNLEKH 60 Query: 132 SAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 ++++ + + + + +SV PKRK + + T++D+ + Sbjct: 61 ---HCRATLKLHLNGIHFLFEHVLHRSFTISVCLPKRKEKLPQLLTQQDISAVIYYCKTN 117 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLLAM 247 R GLR S+ V + +K + V + ++ + Sbjct: 118 KH-RAMVALCYGCGLRVSELTHVKVSDIDGQRQLLKVCQGKGAKDRLVIISPVLLQFMRQ 176 Query: 248 TPIGKETF------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISAD 299 + ++ + F A KAG+ S H +R AT Sbjct: 177 YWQQYHPDTWLFGSRWHGVIYPIHESTFRKGLTCAAKKAGITKPCSPHSLRHAYATHQLQ 236 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRI-RLGIKNSRRISSVVDSDDP 348 AG ++L G +++ E Y + + G + + P Sbjct: 237 AGMPLNQLQQQLGHQSIQSTERYLHWSPELGHQGTDLLANLGGGLSWQHP 286 >gi|283458210|ref|YP_003362828.1| integrase [Rothia mucilaginosa DY-18] gi|283134243|dbj|BAI65008.1| integrase [Rothia mucilaginosa DY-18] Length = 422 Score = 115 bits (288), Expect = 8e-24, Method: Composition-based stats. Identities = 57/347 (16%), Positives = 106/347 (30%), Gaps = 34/347 (9%) Query: 27 KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHW-G 85 + LP + T P + + + ++ + + + Sbjct: 77 RDEAPSTTLPVTYTRTLAPEQVESSALPDSALPESALGVSGEV-FRPVLDRFERFLRYEK 135 Query: 86 SLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTS 139 + + S+ S + G I IR + S S+ ++ ++ Sbjct: 136 HRSEETIRSYISDLEGFFGYMARRGVRHLDSIDASLIREWLGSLHLRQAARSTVVRRGST 195 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG---------- 189 +R F WA +E V NP + PKR++ ++E M Q + E Sbjct: 196 LRTFFTWAQEEELVHANPTRGMRTPKRESHLPPVLSREQMNQLLTTLQERRAQDPRDARL 255 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMT 248 + E L SG+R S+ +Q + +++ K V L +K L Sbjct: 256 LRLEAVVEVLYASGMRISELTGLDLQSVDRANKTVRVLGKGNKERVVPLGTPALKALNRW 315 Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKS-------------AHGVRKFSA 294 +I Q + A A + + + AH +R +A Sbjct: 316 VSYGRPQWIPEGSQGVTALFIGPRGGRANARQIREDLTRLLRTVENTQASGAHVLRHSAA 375 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 T D GA + G ++ + YT RL +R Sbjct: 376 THLVDGGADIRSVQELLGHSSLATTQIYTH-VSMKRLAETYARAHPR 421 >gi|296117640|ref|ZP_06836224.1| tyrosine recombinase XerC [Corynebacterium ammoniagenes DSM 20306] gi|295969371|gb|EFG82612.1| tyrosine recombinase XerC [Corynebacterium ammoniagenes DSM 20306] Length = 281 Score = 115 bits (288), Expect = 8e-24, Method: Composition-based stats. Identities = 32/270 (11%), Positives = 81/270 (30%), Gaps = 16/270 (5%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVESRKH 128 I ++ + + + + + S + F+ + + + + Sbjct: 3 EAIYDFAEHQRYVLGRSEATIKGYTSDLLDLAQTTEDFASFNLAHLRSWLASAVAAGKAR 62 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187 + + + + + WAV+Q Y+ + + PK + + +++ Sbjct: 63 S--TLARRTAAAKAFSTWAVKQGYLRTDEAAKLSTPKVPKQLPKVLNEQEAATAMGNAHS 120 Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFM 242 + E L +G+R S+ + + ++ +I+ K V Sbjct: 121 VDELHSLRDAAMLELLYATGMRVSELTGIDLSDIDSSRQTIRVLGKGNKQRVVPYGQAAQ 180 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQ---FSIWFKAKATKAGVNKSAHGVRKFSATISAD 299 K L + + + + + AG S H +R +AT + Sbjct: 181 KALDLWLARRAEMAKDPSALFVGTRGGRIDQRQVRRVVEAAG-QVSPHALRHSAATHMLE 239 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRI 329 GA + G ++ + YT Sbjct: 240 GGADLRVVQELLGHSSLQTTQVYTHVTSER 269 >gi|116254596|ref|YP_770432.1| putative phage integrase/recombinase [Rhizobium leguminosarum bv. viciae 3841] gi|116254608|ref|YP_770444.1| putative phage integrase/recombinase [Rhizobium leguminosarum bv. viciae 3841] gi|116255785|ref|YP_771618.1| putative integrase/recombinase protein [Rhizobium leguminosarum bv. viciae 3841] gi|115259244|emb|CAK10376.1| putative phage integrase/recombinase [Rhizobium leguminosarum bv. viciae 3841] gi|115259256|emb|CAK10389.1| putative phage integrase/recombinase [Rhizobium leguminosarum bv. viciae 3841] gi|115260433|emb|CAK03537.1| putative integrase/recombinase protein [Rhizobium leguminosarum bv. viciae 3841] Length = 286 Score = 115 bits (288), Expect = 8e-24, Method: Composition-based stats. Identities = 38/265 (14%), Positives = 88/265 (33%), Gaps = 17/265 (6%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS- 132 L +L+ ++ S+ + R G ++ + +R+ + S Sbjct: 7 LRRRMIDDMTIRNLSPATQRSYLHAVTKFSRYFGRSP-DRLGLEDVRAFQVHLVSSGLSW 65 Query: 133 --AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 Q + ++R F + + + + +++ +F Sbjct: 66 PALNQTVCALRFFFGVTLGHGEIPERIA----YARTPAKLPTILNGDEIVRFLEAV-PSL 120 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMT 248 + R A +GLR S++ V+ + I+ K G V L + +L + Sbjct: 121 RTRTALTTAYAAGLRASEAVHLKVRDIDGERGIIRVEHGKGGKDRNVMLSAQLLAILRVY 180 Query: 249 P----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302 F ++ + ++ ++ T AG++K + H +R AT ++G Sbjct: 181 WRLARPEVWLFPGRDETKPIDVQVLYSACRSACTAAGIDKRVTVHTLRHSFATHLLESGT 240 Query: 303 TAHELMATYGWKTVDQAETYTKGAD 327 + G + YTK ++ Sbjct: 241 DIRIIQVLLGHNNLSTTARYTKVSN 265 >gi|221638486|ref|YP_002524748.1| Tyrosine recombinase [Rhodobacter sphaeroides KD131] gi|221159267|gb|ACM00247.1| Tyrosine recombinase [Rhodobacter sphaeroides KD131] Length = 313 Score = 115 bits (288), Expect = 9e-24, Method: Composition-based stats. Identities = 69/300 (23%), Positives = 124/300 (41%), Gaps = 13/300 (4%) Query: 41 STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD 100 P +++A + + R + T+ Y S + L+ R + + Sbjct: 2 PEDDPRFVAAWLAEEQRAPTV-RSRSQAGTIAAACEAYLGSRSYRELSDGYRPVIRRHVE 60 Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 +I + + + +HIR+ +E +P A L + R L ++ + + + +P Sbjct: 61 RIKEQGEKALLKDLLPRHIRADLEPL--SPPVASSRLKAWRKLAEFWLLKGMLDADPSEG 118 Query: 161 VERPKRKTE-GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-- 217 V+R K G WT ED++ F++ W G+ RLA E ++G RC D R G Q + Sbjct: 119 VKRKKMGKVAGFTEWTAEDLEAFRARWPIGTAQRLALELYQWTGARCVDVIRLGPQMVGR 178 Query: 218 ------QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271 T L + L+ P+G + + + S Sbjct: 179 DGVLTYVQQKTGNPAHVPWTCPAFGLEEQRADLMRCLPVGSPVYMLTEYGKPRTQKGVSQ 238 Query: 272 WFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 WF A A +AG+ ++AHG+RK+ A+ GA+ + + G T+ + + YT+ ADR R Sbjct: 239 WFSAAAREAGLEGRTAHGLRKYRMNALAEHGASVLVMQSWVGHTTLLEVQEYTRRADRRR 298 >gi|91974776|ref|YP_567435.1| tyrosine recombinase XerD [Rhodopseudomonas palustris BisB5] gi|91681232|gb|ABE37534.1| tyrosine recombinase XerD subunit [Rhodopseudomonas palustris BisB5] Length = 351 Score = 115 bits (288), Expect = 9e-24, Method: Composition-based stats. Identities = 45/331 (13%), Positives = 101/331 (30%), Gaps = 42/331 (12%) Query: 53 GSTPKREYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDF 109 + P R + L + + N+ ++ + Sbjct: 20 AAEPANRETAPLRPASYSDAGLSELFLDMIAAEQGASANTIDAYRRDLADLSHYLTRSRK 79 Query: 110 DYRKITTKHIR---SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 T+ +R + +++R SS + L+++R LF++ + + +P + PKR Sbjct: 80 SIASADTEALRGYLADLDARGFKSSSVARRLSALRHLFRFLLSERIRVDDPAAILSGPKR 139 Query: 167 KTEGIRPWTKEDMQQFKSFWS------------EGSQPRLAFEFLLYSGLRCSDSCRAGV 214 + + D+ + + ++ E L +GLR S+ Sbjct: 140 GRGLPKVLSIADVDRLLGYARQQAEAADGAGGVRAARLYCLLEVLYATGLRVSELVSLPS 199 Query: 215 QHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT-------------------PIGKET 254 + + I + V L + + K Sbjct: 200 SAARGDARMIVVRGKGDKERLVPLNHSAKQAMTRYLATAAAAEKAAATATKAGSKGSKWL 259 Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATY 311 F + + F+ K A +AG++ S H +R A+ GA + Sbjct: 260 FPSFGESGHLTRQHFARDLKDLAGRAGLSPRLVSPHVLRHAFASHLLHNGADLRIVQTLL 319 Query: 312 GWKTVDQAETYTKGA-DRIRLGIKNSRRISS 341 G + + YT DR++ +++ ++ Sbjct: 320 GHSDISTTQIYTHVVEDRLKSLVRDLHPLAE 350 >gi|330993350|ref|ZP_08317285.1| Tyrosine recombinase xerD [Gluconacetobacter sp. SXCC-1] gi|329759380|gb|EGG75889.1| Tyrosine recombinase xerD [Gluconacetobacter sp. SXCC-1] Length = 307 Score = 115 bits (288), Expect = 9e-24, Method: Composition-based stats. Identities = 48/294 (16%), Positives = 88/294 (29%), Gaps = 28/294 (9%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKHTPS 131 I + + A+N+ ++ + G R +R+ + Sbjct: 6 IDAFLEMQAAERGAALNTLAAYARDLADMTAVLHAGGVTARTAGEADLRAYLAGLAGQGL 65 Query: 132 SAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +A + L+ ++ F + R+ NP +E P+ T R ++ +++ + + Sbjct: 66 AARTQARRLSCLKQYFLFLAREGMRPDNPAALLEAPRLDTPLPRFLSEGEVEALLAACAP 125 Query: 189 GSQP-----------RLAFEFLLYSGLRCSDSCR-AGVQHLQNNIFSIKTQKTGTIITVE 236 R A E L SGLR S+ + K G V Sbjct: 126 EPDATPARQRRLQVARAALEMLYASGLRISELLALPRRALDAAPGMMLVRGKGGRERMVP 185 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQ------KMNATQFSIWFKAKATKAGVN---KSAH 287 + + M F A +AG++ S H Sbjct: 186 MSARAREAARALMEADAARRSPFLFPGRGVARPMTRQGFDRILHDVALRAGLDPARLSPH 245 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKNSRRIS 340 +R AT GA L G + + YT DR+R + + +S Sbjct: 246 VLRHSFATHLLAHGADLRALQVLLGHADIATTQIYTHVMLDRLREAVADHHPLS 299 >gi|302878649|ref|YP_003847213.1| integrase family protein [Gallionella capsiferriformans ES-2] gi|302581438|gb|ADL55449.1| integrase family protein [Gallionella capsiferriformans ES-2] Length = 298 Score = 115 bits (288), Expect = 9e-24, Method: Composition-based stats. Identities = 44/285 (15%), Positives = 102/285 (35%), Gaps = 26/285 (9%) Query: 69 TTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKS-GDFDYRKIT----TKHIRSG 122 TL+ + SL+ ++ ++ + + + + + K IR Sbjct: 1 MTLQDACQSFLSHCRSAVSLSEHTLRAYTFDLEDFQNHAQHETNLSLLNKDDLRKFIRHL 60 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS-VERPKRKTEGIRPWTKEDMQQ 181 E RK + + + +++LF+W ++ ++INP + ER + R E+++ Sbjct: 61 REERKLKEITIKRRIACLKLLFRWVQQENMISINPFDNLNERIRLPKRLPRALGSEEIKL 120 Query: 182 FKSFWSEGSQPR--------LAFEFLLYSGLRCSDSCRAGVQH---------LQNNIFSI 224 + + + +A + LL +G+R + + ++ +Q Sbjct: 121 LTGAINLEATDKEFQEFVTGIATKLLLTTGIRVGELVKIDIEDLVLPDCSLKIQGKGNRQ 180 Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284 + + ++ + + FI + I A+KAG+ + Sbjct: 181 RLVYLFEPKLNQAIARYLTIRLTRATETKKLFITEAGIPFTTQKTRILLGDLASKAGIER 240 Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 + H +R +AT +AG + G +++ E YT D Sbjct: 241 RITPHMLRHTTATQLLEAGLDIRYVQKLLGHQSISTTEIYTHVTD 285 >gi|241760809|ref|ZP_04758900.1| integrase/recombinase [Neisseria flavescens SK114] gi|241318706|gb|EER55258.1| integrase/recombinase [Neisseria flavescens SK114] Length = 298 Score = 115 bits (288), Expect = 9e-24, Method: Composition-based stats. Identities = 44/267 (16%), Positives = 93/267 (34%), Gaps = 17/267 (6%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI-TTKHIRSGVESRKHTP--- 130 + Y K+ + ++ ++ +++R D + T + + ++ Sbjct: 11 LELYLKTLLQQGKSEHTVSAYRRDLSELMRLLPDNLENGLPTRRDFVAVLKKLSQKGLSE 70 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 SS ++ L+ R W V+ E + +P +++ P+ + +E + Sbjct: 71 SSLVRKLSVWRQYCSWLVQIEVMESDPTFNMKAPRLPERLPKALPQEPLNHILDHAPVDD 130 Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLL 245 + + FE + SGLR S+ + + + + K G V L + L Sbjct: 131 ELDVRDKAMFELMYGSGLRLSEIQGLNLDGIVLDEGWVSVKGKGGKQRQVPLVAKSIAAL 190 Query: 246 AMT------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297 G++ F N + ++ Q +A A + G + S H +R AT Sbjct: 191 RDYLAVRIAKEGEQALFTNKNGGRLGQRQIQKRLQAWAVRVGSASHISPHMMRHSYATHL 250 Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324 A + G + + YTK Sbjct: 251 LQASGDIRAVQELLGHSNLSATQVYTK 277 >gi|196041298|ref|ZP_03108592.1| integrase/recombinase [Bacillus cereus NVH0597-99] gi|196027783|gb|EDX66396.1| integrase/recombinase [Bacillus cereus NVH0597-99] Length = 330 Score = 115 bits (288), Expect = 9e-24, Method: Composition-based stats. Identities = 43/303 (14%), Positives = 90/303 (29%), Gaps = 26/303 (8%) Query: 46 AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK 105 A + + T I+ + K +L + + + + Sbjct: 2 ARRKNTLDESELAVIKKQSKSYVETFDEAITLFVKDCELRNLRPFTIKYYLNELQAFLNL 61 Query: 106 SGDFDYR------------KITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYV 153 + + + I R S L ++R + + +Q+++ Sbjct: 62 LTEQEIDVSLLRPYNMTEEHVKENVILYMKNYRGIKVVSINTRLRALRAFYNFLYKQKHI 121 Query: 154 AINPCLSVERPKRKTEGIRPWTKED----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209 NP +++ K + I ++KE Q G + +L +G+R ++ Sbjct: 122 PRNPMENIKLLKDRKRIIPTFSKEQLNKLFHQPNLRTFTGVRDYTIMMLMLETGIRVNEL 181 Query: 210 CRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAMTPIGKETF-----FINNDKQ 262 V+ ++ I+ K+ V + L + F+ D Sbjct: 182 VGLSVKDIRWEDSLLVIRNAKSYRERQVPIQRDMKNQLKKYIAIRGYVESTALFVTVDGT 241 Query: 263 KMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 ++ A + S H R A +S GA EL A G ++ Sbjct: 242 RLTRRGIQQRISIYGNMAQIKDVRCSPHTFRHTFAKLSVQQGANIFELQAILGHTNMEIV 301 Query: 320 ETY 322 +TY Sbjct: 302 KTY 304 >gi|170719429|ref|YP_001747117.1| site-specific tyrosine recombinase XerC [Pseudomonas putida W619] gi|254799352|sp|B1J1V8|XERC_PSEPW RecName: Full=Tyrosine recombinase xerC gi|169757432|gb|ACA70748.1| tyrosine recombinase XerC [Pseudomonas putida W619] Length = 299 Score = 115 bits (288), Expect = 9e-24, Method: Composition-based stats. Identities = 35/281 (12%), Positives = 88/281 (31%), Gaps = 25/281 (8%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQIIRK--------SGDFDYRKITTKHIRSGVES 125 + Y ++ ++ +++ +++I G +++ + + Sbjct: 5 LEAYCAHLRNERQVSEHTLLAYRRDLEKVIEYCNTQGIAGWGALQIQQLR--QLIARQHH 62 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS- 184 + + S + L+++R L+++ R+ +P + PK + + + Q Sbjct: 63 QGQSSRSLARLLSAVRGLYRYLNREGLCQHDPASGLSAPKGERRLPKVLDTDRALQLLDG 122 Query: 185 ---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDG 240 + + E SGLR S+ ++HL K G + + Sbjct: 123 GVDDDFIARRDQAILELFYSSGLRLSELTNLDLEHLDLAAGLVQVLGKGGKARVLPVGRK 182 Query: 241 FMKLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKF 292 + + FI+ ++ + KA + G + H +R Sbjct: 183 AREAMQQWLRLRGIGGPRDGAVFISRQGNRLGPRAIQMRVKAAGERELGQHLHPHMLRHS 242 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 A+ ++ + G + + YT D L Sbjct: 243 FASHVLESSQDLRAVQEMLGHADISTTQIYTH-LDFQHLAA 282 >gi|91215199|ref|ZP_01252171.1| putative site-specific recombinase [Psychroflexus torquis ATCC 700755] gi|91186804|gb|EAS73175.1| putative site-specific recombinase [Psychroflexus torquis ATCC 700755] Length = 296 Score = 115 bits (288), Expect = 9e-24, Method: Composition-based stats. Identities = 43/276 (15%), Positives = 86/276 (31%), Gaps = 26/276 (9%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGVE---S 125 I + + A + IS+ + Q + + ++ IR + Sbjct: 3 YIDSFLEYLLLEKKYAKLTIISYATDLAQFQVFILETYDTREMSEVNYPMIRQWIVGFIE 62 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT----KEDMQQ 181 T + + L++++ FK+ ++ + +A+NP + + K ++ ++ Sbjct: 63 LGLTHKTINRKLSTLKTFFKFLLKIQVIAVNPMVQHKSLKLPKRQQEAFSVLELEKVSDY 122 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTII------- 233 F+ EG + L E L +G+R + + L K Sbjct: 123 FEDVTFEGLRDHLIIELLYATGMRRQELIDLQLSSLDLKQQQLKVRGKRNKERLIPLLDS 182 Query: 234 ----TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGV 289 LL T + +F+ +TK + S H + Sbjct: 183 ISFLIERYLQERSVLLPQGSQLFVTSKGKAIYPNLVYRVVHSYFEKVSTKKKL--SPHLL 240 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 R AT D GA + G ++ E YT Sbjct: 241 RHAFATHLLDKGADISAIKDLLGHSSLASTEVYTHS 276 >gi|86139634|ref|ZP_01058202.1| integrase/recombinase [Roseobacter sp. MED193] gi|85823817|gb|EAQ44024.1| integrase/recombinase [Roseobacter sp. MED193] Length = 306 Score = 115 bits (288), Expect = 9e-24, Method: Composition-based stats. Identities = 44/267 (16%), Positives = 80/267 (29%), Gaps = 17/267 (6%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130 L + ++ S G T + +R+ TP Sbjct: 20 LRQRMIDDMRIRGMGEKAQKSHIRAIKDFAAFLG-RPPDTATPEDLRAYQLHMTDSGVTP 78 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-EG 189 S+ + ++R F +E + E + ++ E++ G Sbjct: 79 STFNVRIVALRFFFSMTCGREEMKRYMQFRTEP----RKLPVVFSVEEVSDILMAAPGPG 134 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPDGFMKLLAM 247 + R A +GLR S+ C + + ++ I + K V L G ++LL Sbjct: 135 LKYRAALSISYGAGLRASEVCNLKISDIDSDRMLIHVELGKGQKDRKVMLSPGLLELLRA 194 Query: 248 TPIGKETFFI----NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301 ++ Q S F + AGV K + H +R AT +A Sbjct: 195 WWREARPEGWLFPGKPKINPISPRQLSRAFTSAKHMAGVKKPATLHTLRHSFATHLLEAN 254 Query: 302 ATAHELMATYGWKTVDQAETYTKGADR 328 + G + YT A + Sbjct: 255 TDVRVIQVLLGHAKLTTTARYTHVATK 281 >gi|228963415|ref|ZP_04124576.1| Prophage LambdaBa04, site-specific recombinase, phage integrase [Bacillus thuringiensis serovar sotto str. T04001] gi|228796309|gb|EEM43756.1| Prophage LambdaBa04, site-specific recombinase, phage integrase [Bacillus thuringiensis serovar sotto str. T04001] Length = 375 Score = 115 bits (288), Expect = 9e-24, Method: Composition-based stats. Identities = 48/351 (13%), Positives = 99/351 (28%), Gaps = 40/351 (11%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP---RKKPTTL 71 R R K + G + A N+ K TL Sbjct: 7 RKRGEKWSFTIDIGRDPLTDKRKQKTVSGFKTKKEAERACNELIHQFNTGSLVDDKNLTL 66 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH-- 128 + E+ ++ + + I++ + +II G + + H + V+S Sbjct: 67 SEYLQEWLENTAKQRVRDTTFINYRRAVNSRIIPVIGSHKLKDLKPLHGQRFVKSLIDEE 126 Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-SFW 186 +P ++ + AV+ E + NP VE P+ + W+ E+ + F Sbjct: 127 LSPKYIEYIFIVLKGALEDAVKWELLYKNPFEHVEIPRPRKVVNNTWSIEETKTFLTYAK 186 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-----------------NNIFSIKTQKT 229 + F L +G+R + +++ F+ Sbjct: 187 FDNPIYYHLFLLALNTGMRRGELLGLKWKNVDLVEGKISVTETLIYDELGFRFTEPKTAG 246 Query: 230 GTIITVELPDGFMK-------------LLAMTPIGKETFFINNDKQKMNATQFSIWFKAK 276 + + + + F D + + + F+ Sbjct: 247 SKRLISIDQSLCKELKSYKAKQNEFKLAIGKAYEDNDLVFSREDGRPIYPRTLTTVFERF 306 Query: 277 ATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325 A V K H +R AT+ G + G ++ +TY+ Sbjct: 307 IKTAQVPKIRFHDLRHTHATLLLKLGINPKIVSERLGHNSIKTTLDTYSHV 357 >gi|206599577|ref|YP_002242016.1| gp33 [Mycobacterium phage Brujita] gi|206282726|gb|ACI06247.1| gp33 [Mycobacterium phage Brujita] gi|302858513|gb|ADL71260.1| gp33 [Mycobacterium phage island3] Length = 297 Score = 115 bits (288), Expect = 9e-24, Method: Composition-based stats. Identities = 45/266 (16%), Positives = 93/266 (34%), Gaps = 3/266 (1%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134 ++ +R SL+ + + ++ G + + E + + Sbjct: 2 VNRWRTWQFAQSLSARTVEERVATVRRMAAWCGVEPEFAQVEQIVSWLAEGGNWSARTRW 61 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194 + ++ F W +Q + NP + + RPKR RP + D+Q+ + + Sbjct: 62 TYYGALSAWFLWLQQQGHRHDNPMVMIGRPKRPKSVPRPVSNLDVQRLL-AVRAHKRTKA 120 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254 + GLR + + +HL ++ G + + +A + Sbjct: 121 MILLAAFQGLRVHEIAQIKGEHLDLIERTMTVTGKGNVTATLPLHHRVVEIAYQMPRRGH 180 Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWK 314 +F D+ S K +AGV SAH +R + T +AG + + Sbjct: 181 WFPGPDRGHQRRESVSGTIKEAMIRAGVVGSAHCLRHWFGTALLEAGVDLRTVQELMRHQ 240 Query: 315 TVDQAETYTKGADRIRLGIKNSRRIS 340 ++ E YT+ D+ R + R+ Sbjct: 241 SLTSTEIYTRVTDQRR--AEGIERLD 264 >gi|228961935|ref|ZP_04123475.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis serovar pakistani str. T13001] gi|228797758|gb|EEM44831.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis serovar pakistani str. T13001] Length = 369 Score = 115 bits (288), Expect = 9e-24, Method: Composition-based stats. Identities = 48/366 (13%), Positives = 118/366 (32%), Gaps = 44/366 (12%) Query: 17 RHGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + G G+R + + T A + + + TL Sbjct: 7 KRGNKYCIVIDIGPDPETGKRRQKWFSGYKTKKEA-QADVAKKITELNEGTFIEPSKVTL 65 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 K ++ + + S+ ++ ++++ + +I G K+ HI+ ++ Sbjct: 66 KDYLNHWLE-IKSMSIEKSTFAGYKAFINQHVIPSIGMVTLHKLNVIHIQKCYKTAIDKG 124 Query: 131 SSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + L ++ AV+Q ++ NP E PK++ I+ WT+E++++F + Sbjct: 125 IANNSILLMHRILKSALNLAVKQNIISRNPADFAEIPKKEKTPIQTWTEEEVKKFLAHSQ 184 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--------------TGTII 233 E S+ + + + +G+R + Q + ++ + + Sbjct: 185 E-SRYHIGYLLAITTGMRLGEVLGLRWQDIDFEKHTVTINQTSGHDNKIKKTAKTNSSKR 243 Query: 234 TVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKAKATK 279 T+ +P+ + L + ++ N + + F F K Sbjct: 244 TIPVPNETIAALKKHKILINKEKLKFGSAYLDQDLINCNEFGRIIKRAHFRKSFIRMTHK 303 Query: 280 AGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSR 337 G+ H +R AT+ G + G + Y+ + + + Sbjct: 304 VGIKEIKFHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLSVYSHVLPN--MQEEAVK 361 Query: 338 RISSVV 343 + Sbjct: 362 NFGKSI 367 >gi|172057600|ref|YP_001814060.1| integrase family protein [Exiguobacterium sibiricum 255-15] gi|171990121|gb|ACB61043.1| integrase family protein [Exiguobacterium sibiricum 255-15] Length = 347 Score = 115 bits (288), Expect = 9e-24, Method: Composition-based stats. Identities = 45/322 (13%), Positives = 91/322 (28%), Gaps = 53/322 (16%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI------------- 119 I Y + + + + FD + + I + I Sbjct: 32 DFIRSYIDHLASKNFSKATMRRYVYDFDSFFQFVAEASGESIQARDITQEAFLEIDGSGI 91 Query: 120 ----RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 ++++ PS + L++++ LF+ + ++ NP + RPK+ T Sbjct: 92 AAYAEYLALTKQNAPSVINRKLSALQSLFRHLIDIGVLSENPVAKINRPKQAKRDPVYLT 151 Query: 176 KEDMQQFKS-------------FWSEGSQPRLAFEFLL--YSGLRCSDSCRAGVQHLQNN 220 K + + E + R F L YSG+R S+ + + + Sbjct: 152 KREWDELMQLLPSNVEMNAREATHYERDRVRDITLFQLLGYSGMRLSEMTQLTWNAVDFH 211 Query: 221 IFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM------NATQFSIWF 273 +I+ + L L + + Sbjct: 212 EGTIRVIGKGNKERVIPLAKPVRVALRKFAAHYSLTMRGPEPIFQKQGKALSPRAVQHIL 271 Query: 274 KAKATKAGV--------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 K + + H +R AT A G + G ++V + Y Sbjct: 272 KRHVDRLRPVLPFLERKQITPHKLRHTFATRLATGGVDVLTIQQLLGHESVATTQVYAHI 331 Query: 326 ADRIRLGIKNSRRISSVVDSDD 347 DR + +R + DS+ Sbjct: 332 GDREK------KRAIELFDSER 347 >gi|302874512|ref|YP_003843145.1| integrase family protein [Clostridium cellulovorans 743B] gi|307690879|ref|ZP_07633325.1| site-specific tyrosine recombinase XerC [Clostridium cellulovorans 743B] gi|302577369|gb|ADL51381.1| integrase family protein [Clostridium cellulovorans 743B] Length = 311 Score = 115 bits (288), Expect = 9e-24, Method: Composition-based stats. Identities = 38/284 (13%), Positives = 88/284 (30%), Gaps = 34/284 (11%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIR---- 120 L+ +Y + + N+ + + D ++ +I + I+ Sbjct: 9 LVEQYLGYLSIIKNRSENTILEYRIDLLMFFSYILKSRSITVADSNFAQIDLEFIKSINL 68 Query: 121 --------SGVESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGI 171 ++ + + + + S+R +K+ + + N +E PK Sbjct: 69 NDMYSFISYCQKTLNSSAGTRARKIVSIRQFWKYLKTKAHVIDNNIAEELETPKLPKRIP 128 Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 + E + + + L LR S+ + + N+ S+ + Sbjct: 129 KYLNLEKSFRLLMECKKSIRDHCIITIFLNCALRLSELASLNIDQVNNDTLSVVGKGN-K 187 Query: 232 IITVELPDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKAGVN- 283 + L K + + + FI+ + ++ K +G++ Sbjct: 188 ERKIFLTPAAKKAINNWLHIRNSINVDTNALFISRNSNRITTRAIQNIIKKYVLSSGLDS 247 Query: 284 --KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTK 324 S H +R +AT+ G L G ++V E YT Sbjct: 248 KSISTHKLRHTAATLMYKYGRVDIRSLQQILGHESVATTEIYTH 291 >gi|330504101|ref|YP_004380970.1| phage integrase family protein [Pseudomonas mendocina NK-01] gi|328918387|gb|AEB59218.1| phage integrase family protein [Pseudomonas mendocina NK-01] Length = 339 Score = 115 bits (288), Expect = 9e-24, Method: Composition-based stats. Identities = 43/336 (12%), Positives = 90/336 (26%), Gaps = 24/336 (7%) Query: 19 GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78 G+ GRR R + + K L LI + Sbjct: 9 GRWKVDVEPIKGRRFR-KTFKTKGEAQRFEATCRAKVINAPEWAPKPKDRRKLSELIDRW 67 Query: 79 RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHTPSSAIQ 135 + H +L+ + D + ++ G+ K+T R+ P + Sbjct: 68 -ATLHAHTLSDG--EARRRLLDTMAKELGNPVAIKMTGNEYAEYRTQAIKAGANPKTLNN 124 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWSEGSQ 191 L +R +F + + L+ RP R E + + + + Sbjct: 125 RLGYLRSVFNVLHQLGEIDYANPLARVRPLRLQEKELAYLTDSQIETLFATIHRYCRTPH 184 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251 + L +G R ++ ++N + + K + ++ + + + Sbjct: 185 VAMVAAICLATGARWGEAQALTPDRVRNQLVTFVNTKGKRVRSIPIALELEQQIHRHFKQ 244 Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATY 311 F F +S+H +R A+ G L Sbjct: 245 HGQFSNCL-------NSFDKALGESRLPVPAGQSSHVLRHTFASHFVMNGGNILTLQKIL 297 Query: 312 GWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347 G T+ Y L + + + + D Sbjct: 298 GHTTLAMTMRYAH------LAPDHLQDVVRFGPASD 327 >gi|197122574|ref|YP_002134525.1| tyrosine recombinase XerD [Anaeromyxobacter sp. K] gi|196172423|gb|ACG73396.1| tyrosine recombinase XerD [Anaeromyxobacter sp. K] Length = 298 Score = 115 bits (288), Expect = 9e-24, Method: Composition-based stats. Identities = 40/279 (14%), Positives = 89/279 (31%), Gaps = 24/279 (8%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVE-- 124 L+ + + LA NS ++ + + G + ++ I++ + Sbjct: 4 LEPALDLFLAHVRVEKGLAENSVEAYGRDLRRYLEHLDELGVDAWERVGRGEIQAHLAEL 63 Query: 125 -SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 R +P S + L+++R L + + + +P +E P+ + +++ + Sbjct: 64 VRRGLSPRSQARALSAIRSLHRLLAAERVTSADPSDEIESPRPGRRLPGLLSHDEVDRLL 123 Query: 184 SFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELP 238 + G + R E L +GLR S+ + + + + V + Sbjct: 124 AAPDVRSAAGIRDRAMLELLYATGLRVSELVSLQLNDVNLETRVLIARGKGNKERIVPVG 183 Query: 239 DGFMKLLAM----------TPIGKETFFINNDKQKMNATQFSIWF--KAKATKAGVNKSA 286 + + + F+ +M F+ A+ S Sbjct: 184 APAAEAVKAYLAVARERLLHGRRSKDLFVTPRGGRMTRQGFAKILDRCARRAGIRRRISP 243 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 H +R AT + GA + G V + YT Sbjct: 244 HKLRHSFATHLLEGGADLRAVQEMLGHADVSTTQIYTHV 282 >gi|34558588|gb|AAQ75061.1| putative integrase [Lactobacillus phage JCL1032] Length = 370 Score = 115 bits (288), Expect = 9e-24, Method: Composition-based stats. Identities = 48/357 (13%), Positives = 115/357 (32%), Gaps = 35/357 (9%) Query: 14 ERTRHGKIIYYFRKGH---GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP-T 69 ++ + GK +Y R G+ R+ A A K I+ R + Sbjct: 10 KKMKSGKYQWYQRYRDPLTGKIKRVTCLLSRGSQQARKEAELILAQKLADISDARTETNI 69 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVES--R 126 T+ L + + + + ++ G+ K IT + ++S + Sbjct: 70 TIGELSKLFLDHERERGVKPTTLSVRRTGMSAMLNYFGEDAIAKNITKPMVTKYLQSSLK 129 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS---VERPKRKTEGIRPWTKEDMQQFK 183 K + S+ + M ++ +A+ Y+ NP +P++ T + ++ Sbjct: 130 KKSNSTVHVYRVGMSTMYDFAIDYGYLTENPAKGLRIQWKPQKPTSITDKYFTDEELNNL 189 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------- 232 + F+F+ +G+R ++ +++ + I Sbjct: 190 FAVIDRPDYLRLFKFMYLTGMRFGEATGLQFKNIHDQYADITGTMWANGIKSDSPKTLAS 249 Query: 233 -ITVELPDGFMKLLAMTPIGK-------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284 +V LP ++++ F +++ K K+ +AG+++ Sbjct: 250 FRSVFLPKQAIEIVEWFKQHDRNAEPDDFIFINQLKHVPFKMNTVALYLKNKSKEAGIDR 309 Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRR 338 + H R + A+ G H + G + E Y + ++ + Sbjct: 310 KITTHFFRHTHISKLAEQGVPLHVIQKRVGHIKAETTREIYLHVT---KKMQEDMEK 363 >gi|153000221|ref|YP_001365902.1| phage integrase family protein [Shewanella baltica OS185] gi|151364839|gb|ABS07839.1| phage integrase family protein [Shewanella baltica OS185] Length = 296 Score = 115 bits (288), Expect = 9e-24, Method: Composition-based stats. Identities = 36/282 (12%), Positives = 82/282 (29%), Gaps = 19/282 (6%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KH 128 L ++ + + ++ +I D +TT ++ H Sbjct: 9 FDLLYEQHLTNLTLQGKRPATIDAYSRAIRRIAAYF-DCCPDTLTTDDLKRYFADLIASH 67 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + S+ ++ + + + + +N P + T ++ S + Sbjct: 68 SWSTVKLDRNGLQFFYFHVLNKSWQWLNIVK----PPQVKHLPDILTPCEVAIVISLTRQ 123 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDGFMKLLA 246 + ++ F L GLR ++ V + I+ K G V LP + L Sbjct: 124 -LRYQVCFLTLYSMGLRLGEAISLQVGDIDAGLMQVHIRDAKGGKDRLVPLPQRTLLALR 182 Query: 247 MTPIGKETFFINNDKQKMNATQF------SIWFKAKATKAGVNK--SAHGVRKFSATISA 298 + K + ++K S H +R AT Sbjct: 183 YYWRTHRHPRWLFPGKDNQPDSLMDRGGLQKAMKQVIAECNIHKAISPHSLRHSYATHLL 242 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSRRI 339 + G + G +++ YT+ D + + ++ Sbjct: 243 EQGLDLRSVQTLLGHHSLNTTARYTRLTDITRKNTCEAINQL 284 >gi|28871096|ref|NP_793715.1| site-specific recombinase, phage integrase family [Pseudomonas syringae pv. tomato str. DC3000] gi|28854346|gb|AAO57410.1| site-specific recombinase, phage integrase family [Pseudomonas syringae pv. tomato str. DC3000] Length = 347 Score = 115 bits (288), Expect = 9e-24, Method: Composition-based stats. Identities = 48/327 (14%), Positives = 109/327 (33%), Gaps = 14/327 (4%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 PF+ R R+ + + + L G + +++ + Sbjct: 21 PFMAYYEKRGDAWRAQIRRKGYPTLS-ATFDTKAEAQRWAAELEGDMSRARFVDVREAEA 79 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128 T+L + Y + ++ + K + + + S ++ Sbjct: 80 TSLATALERY--ESEVTESKKGAKQERVRIKKWMESKFAGKSLASLRSSDMASYRDAEIK 137 Query: 129 TPS---SAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + L + L+ A + + NPC ++ PK + R T ++++ Sbjct: 138 AGRSTATVRLDLAVISHLYTVATKDWGIEGLTNPCRALRMPKGSKQRERRPTADELKSLY 197 Query: 184 SFWSEGSQPR-LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242 E S + E + + +R S+ +Q + ++ K G +V L Sbjct: 198 KAAGEISPELPVIIELAVETAMRRSELVTLRKDQIQGKVAFLEDTKNGERRSVPLSSRAR 257 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAG 301 +L+ P + + ++ A S +F KA + H +R + + + G Sbjct: 258 ELIEGVPAPIKGGPLF----RLKADTVSNYFPLACEKANIQGLRLHDLRHEATSRLFERG 313 Query: 302 ATAHELMATYGWKTVDQAETYTKGADR 328 T E+ + G KT+ + YT + + Sbjct: 314 FTMMEVASITGHKTLAMLKRYTHLSPQ 340 >gi|39933259|ref|NP_945535.1| site-specific tyrosine recombinase XerC [Rhodopseudomonas palustris CGA009] gi|39652884|emb|CAE25626.1| putative site-specific recombinase, INTEGRASE/RECOMBINASE RIPX (xerC) [Rhodopseudomonas palustris CGA009] Length = 371 Score = 115 bits (288), Expect = 9e-24, Method: Composition-based stats. Identities = 38/290 (13%), Positives = 84/290 (28%), Gaps = 34/290 (11%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRSGVES 125 ++++ L+ + ++ Q ++ + ++ +R+ + + Sbjct: 72 MTKWLSHLRAERRLSGKTLEAYARDVRQFLQFLAGHWGGEVTLGRFARLEATDVRAFMAA 131 Query: 126 RK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK------ 176 R+ S ++ L MR ++ R+ + SV PK K +P Sbjct: 132 RRADEIAGRSLMRALAGMRSFGRFLEREGKGRVGALASVRAPKIKKSLPKPLPIAAAKRL 191 Query: 177 ---EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233 ++ + + L SGLR S++ + + G Sbjct: 192 ADADERAGEERETWVLIRDAAVMALLYGSGLRISEALGLKRRDVPAPGKGDTLIVHGKGN 251 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQ----------KMNATQFSIWFKAKATKAGVN 283 + +LA N ++ + + G+ Sbjct: 252 KTRMVPVLQNVLAQIAEYAAACPYNLPPDGPMFVGARGGPLSPRIIQLAMERLRGGLGLP 311 Query: 284 --KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 + H +R AT G + G ++ + YT G D RL Sbjct: 312 DSATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQVYT-GIDTERL 360 >gi|303246077|ref|ZP_07332358.1| integrase family protein [Desulfovibrio fructosovorans JJ] gi|302492473|gb|EFL52344.1| integrase family protein [Desulfovibrio fructosovorans JJ] Length = 339 Score = 115 bits (288), Expect = 9e-24, Method: Composition-based stats. Identities = 43/327 (13%), Positives = 95/327 (29%), Gaps = 15/327 (4%) Query: 19 GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL--KWLIS 76 G +R R Y + Y + K TL L Sbjct: 9 GNWYVQYRVPGLVSPRKEYFGKGEAGMNYAAKRADEIKSGHVFTIASLKGKTLYLDELAQ 68 Query: 77 EYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK-HTPSSAI 134 Y + R S S + + +++ + + + ++ Sbjct: 69 VYLDFLKSQGKNESWRKSIASLVNNHFLPVLSYCPVDQLSFQDVMLVANRFSLKSIATRN 128 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194 ++L +R + + + Q NP + ++ + + T +D+Q+ + L Sbjct: 129 RYLECLRTILNFGINQGLTTNNPMRTWKKAREPKREFK-LTFDDLQRILDKAQPHLKWAL 187 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT----IITVELPDGFMKLLAMTPI 250 + L + S+ R + + + I+ + T T + +LL Sbjct: 188 EVLWELGTRPGNSELFRIKWEDIDYDGDVIRIRGTKTQTSDRLIPLTEYFKTRLLERQNQ 247 Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELM 308 + + I + K+ F++ +AG+ + VR A+ GA + Sbjct: 248 AQSEYVIEYNGHKVT--NVKRSFRSALKEAGISYPVRLYDVRHLFASTMLANGADLKAVS 305 Query: 309 ATYGWKTVDQAE-TYTKGAD-RIRLGI 333 G T Y + + Sbjct: 306 KLLGHSTTRMTADVYYHELKGEKKRAL 332 >gi|225021106|ref|ZP_03710298.1| hypothetical protein CORMATOL_01118 [Corynebacterium matruchotii ATCC 33806] gi|224946106|gb|EEG27315.1| hypothetical protein CORMATOL_01118 [Corynebacterium matruchotii ATCC 33806] Length = 331 Score = 115 bits (288), Expect = 9e-24, Method: Composition-based stats. Identities = 41/291 (14%), Positives = 78/291 (26%), Gaps = 26/291 (8%) Query: 71 LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGVESR 126 L+ I+++ + H + + + S + DF + + + Sbjct: 40 LQEAIADFAEHLHLVVGRSPATVAGYRSDLIDFCQHAHTFEDFTLVNLRAWLGAAVDAGK 99 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE-----DMQQ 181 + W RQ Y+ N + PK T + Sbjct: 100 SRATIARRAAAAR--SFSSWCERQGYLDTNVAARLAVPKSGRSLPTVVTPTAAETLMVSS 157 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELPDG 240 + E + E L +G+R S+ C + + T K V + Sbjct: 158 QATTEPEYLRDTAMLELLYATGIRVSELCGIDLADVNYSRNTVKVTGKGNKQRVVPFGNP 217 Query: 241 FMKLLAMTPIGKETFFINNDKQKMN------------ATQFSIWFKAKATKAGVN-KSAH 287 L +N K N + GV+ H Sbjct: 218 AASALKAWRDHGRPHLLNPKKPAHNALFLGARGGRIDPRMVRTVVARAGKQLGVDGLGPH 277 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337 +R +AT D GA + G ++ + YT + R++ + Sbjct: 278 SLRHSAATHMLDGGADLRVVQELLGHSSLQTTQIYTHVSTTRLKQAYNQAH 328 >gi|126464099|ref|YP_001045212.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029] gi|126105910|gb|ABN78440.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029] Length = 360 Score = 115 bits (288), Expect = 9e-24, Method: Composition-based stats. Identities = 65/347 (18%), Positives = 119/347 (34%), Gaps = 27/347 (7%) Query: 10 FVTKERTRHGKI-IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 + R GKI +Y++ G RI P F + + P Sbjct: 5 HRVRRRLASGKIAVYHYAWRGGPRIDAA-PGSPEF-------VAAYNAAHAARDRPAHHD 56 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128 TL+ LI+ Y+K+ + LA +R + + QI GD + + +R + Sbjct: 57 GTLQALITAYQKTPAFTDLAEATRKGYIRHIRQIEADFGDMPVQALADPRVRGEFLDWRD 116 Query: 129 -----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + SA + + + WA + + +NPC R + WT+ + F Sbjct: 117 RLAQKSKRSADYAFSVLARILSWAHDRRKIPVNPCEKPGRLYTGSRADSIWTEAQIAAFL 176 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 + RL F +++G R +D + ++ KTG + + + + Sbjct: 177 AAAPR--PVRLPFLLAIWTGQRQADILQLTWTAYDGKAIRLRQSKTGRHMLIPVAQPLRE 234 Query: 244 LLAMTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300 + + T + Q + F F A + + H +R + T A A Sbjct: 235 AMEEARARRRTLTICETSRGQAWTSDGFKTSFGKAQAAARIEGVTFHDLRGTAVTFLALA 294 Query: 301 GATAHELMATYGWKTVDQAE-----TYTKGADRIRLGIKNSRRISSV 342 G + E+ A G ++ AE Y RLG ++ Sbjct: 295 GCSVPEIAALTGH-SLKDAEGILSKHY--LGRDRRLGESAVAKLERH 338 >gi|228908344|ref|ZP_04072189.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis IBL 200] gi|228851385|gb|EEM96194.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis IBL 200] Length = 369 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 48/366 (13%), Positives = 118/366 (32%), Gaps = 44/366 (12%) Query: 17 RHGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + G G+R + + T A + + + TL Sbjct: 7 KRGNKYCIVIDIGPDPETGKRRQKWFSGYKTKKEA-QADVAKKITELNEGTFIEPSKVTL 65 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 K ++ + + S+ ++ ++++ + +I G K+ HI+ ++ Sbjct: 66 KDYLNHWLE-IKSMSIEKSTFAGYKAFINQHVIPSIGIVALHKLNVIHIQKCYKTAIDKG 124 Query: 131 SSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + L ++ AV+Q ++ NP E PK++ I+ WT+E++++F + Sbjct: 125 IANNSILLMHRILKSALNLAVKQNIISRNPADFAEIPKKEKTPIQTWTEEEVKKFLAHSQ 184 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--------------TGTII 233 E S+ + + + +G+R + Q + ++ + + Sbjct: 185 E-SRYHIGYLLAITTGMRLGEVLGLRWQDIDFEKHTVTINQTSGHDNKIKKTAKTNSSKR 243 Query: 234 TVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKAKATK 279 T+ +P+ + L + ++ N + + F F K Sbjct: 244 TIPVPNETIAALKKHKILINKEKLRFGSAYLDQDLINCNEFGRIIKRAHFRKSFIRMTHK 303 Query: 280 AGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSR 337 G+ H +R AT+ G + G + Y+ + + + Sbjct: 304 VGIKEIKFHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLSVYSHVLPN--MQEEAVK 361 Query: 338 RISSVV 343 + Sbjct: 362 NFGKSI 367 >gi|295396350|ref|ZP_06806516.1| tyrosine recombinase XerD [Brevibacterium mcbrellneri ATCC 49030] gi|294970790|gb|EFG46699.1| tyrosine recombinase XerD [Brevibacterium mcbrellneri ATCC 49030] Length = 329 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 37/290 (12%), Positives = 83/290 (28%), Gaps = 36/290 (12%) Query: 73 WLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGD------FDYRKITTKHIRSGVES 125 + + + + ++ ++ + ++ I ++R + Sbjct: 25 DALDRFHNELTVHKNASEHTVRNYIADATNLMEFLARDGNGDPIHLADIEIGNLRQWLLH 84 Query: 126 R---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 +P + + + +R F + R A NP + PK+ T + + Sbjct: 85 LSAQGASPGTLARRIAGIRSFFTFTTRAGITATNPASRLSTPKKATRLPTVLQQSHTEDV 144 Query: 183 KSFWSE---------------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKT 226 + E ++ E L +G+R S+ + Sbjct: 145 LTQPFEPPAEDAKLTKTQRAARTRDIALVELLYATGMRVSELVNLDTTDVDWTAGLITVL 204 Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAK-A 277 K + + L + F+ ++N Q A Sbjct: 205 GKGNKQRRIPFGGPSQRALTEWLEVRNHLASEGQEALFVGVRGGRINQRQVRDVVHKATA 264 Query: 278 TKAG-VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 +A S HG+R +AT + GA ++ G T+ + YT + Sbjct: 265 KRAKSPEISPHGLRHSAATHMVENGADIRQVQEFLGHATLSSTQIYTHVS 314 >gi|309780244|ref|ZP_07674995.1| tyrosine recombinase XerC [Ralstonia sp. 5_7_47FAA] gi|308920947|gb|EFP66593.1| tyrosine recombinase XerC [Ralstonia sp. 5_7_47FAA] Length = 328 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 48/298 (16%), Positives = 86/298 (28%), Gaps = 41/298 (13%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGVESRKH- 128 I+ Y + + L+ ++ S+ + + + + D ++ + HIR + Sbjct: 19 IAAYLDALKFERQLSPHTLESYTRELAVLQRLGAQHAANVDLTQLQSHHIRRMMAQLHGD 78 Query: 129 --TPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + S + L++ R FKW R V NP V PK + + E Sbjct: 79 GLSGRSIARALSAWRGWFKWMALRDAAVTANPVDGVRAPKSPKRLPKALSVEQAVALMEQ 138 Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII-------- 233 E + R E GLR S+ ++H++ + + Sbjct: 139 LPGDDPETVRDRAVNELFYSCGLRLSELVSLDMRHVKAGAYESASWLDLEAREVQVLGKG 198 Query: 234 --------------TVELPDGFMKLLAMTPIGKETFFINNDKQKMNA---TQFSIWFKAK 276 + LA E + Q + K Sbjct: 199 SKRRTVPVGTKAAEALAAWLAVRAQLARPDAAPEDAHALFLSPRGKRLAQRQIQLRMKRN 258 Query: 277 ATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 A AGV H +R AT + + G ++ + YT D L Sbjct: 259 AIAAGVPADVHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYT-SLDFQHLA 315 >gi|257876357|ref|ZP_05656010.1| phage integrase [Enterococcus casseliflavus EC20] gi|294619900|ref|ZP_06699276.1| site-specific recombinase, phage integrase family [Enterococcus faecium E1679] gi|257810523|gb|EEV39343.1| phage integrase [Enterococcus casseliflavus EC20] gi|291593837|gb|EFF25335.1| site-specific recombinase, phage integrase family [Enterococcus faecium E1679] Length = 380 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 56/361 (15%), Positives = 116/361 (32%), Gaps = 48/361 (13%) Query: 14 ERTRHGKIIYYF------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67 + ++G+ + F G+ IR + A AL + + Sbjct: 7 YKLQNGEKYWGFEAYLGKDPKTGKDIRTKRRRFKSKAEA-QIALNRLLVDFKEKQEFKIN 65 Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR 126 TT + L + + + +S + + I+ G+ KI+ + + V Sbjct: 66 VTTFQELYELWIDNYRTR-VKPSSVAVAQRFCKNHILPAFGELRLDKISVSYCQKQVNEW 124 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT--EGIRPWTKEDMQQFKS 184 T + +FK+ V E NP P++ + ++ +TK+ +Q F Sbjct: 125 HKTLKQYGFLRKTTAQIFKFGVAMEVCKDNPMSKTLLPRKIEEEQPLKFYTKDQLQLFLK 184 Query: 185 FWSEGSQPRLAFEFLL--YSGLRCSDSCRAGVQHLQNNIFS-----------------IK 225 E + +L F L Y+G+R S++ + + + Sbjct: 185 NTKENNSVKLYTFFRLLAYTGMRKSEALALQWEDIDYFNKTITIGKTIAQDEFNQVVLQV 244 Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF---------------S 270 + + T++L D +K L + + I + QF + Sbjct: 245 PKTKNSSRTIQLDDFTLKQLRIWQQEQMKIMILYGYNTNSPKQFLFTTNTNKLYYPQVVN 304 Query: 271 IWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGAD 327 W K + + HG R ++ ++GA+ E+ G K + Y Sbjct: 305 DWLDWIYKKTPMEPQITPHGFRHTHCSLLFESGASIKEVQERLGHKDIKTTMNIYAHVTP 364 Query: 328 R 328 + Sbjct: 365 Q 365 >gi|238756290|ref|ZP_04617605.1| Tyrosine recombinase [Yersinia ruckeri ATCC 29473] gi|238705496|gb|EEP97898.1| Tyrosine recombinase [Yersinia ruckeri ATCC 29473] Length = 276 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 41/261 (15%), Positives = 83/261 (31%), Gaps = 20/261 (7%) Query: 91 SRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRKHTP---SSAIQFLTSMRVLF 144 + S+ ++ +G + + +RS V K +S L+++R Sbjct: 2 TITSYSRQLQALMELAGQMELSHWENLDAAQVRSLVSRSKRAGLQSASLALRLSALRSFL 61 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRLAFEFLLY 201 W V Q + NP V P+ + +++ + + R E + Sbjct: 62 DWLVSQGVLHANPAKGVSTPRTGRHLPKNIDVDEVSRLLDIDLNDPLAVRDRAMLEVMYG 121 Query: 202 SGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMT-------PIGKE 253 +GLR ++ +H+ + K V + + L + Sbjct: 122 AGLRLAELVGMDGKHVDLASGEIWVMGKGSKERKVPMGATAVTWLQHWLALRDLFAPSDD 181 Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATY 311 F+ N ++++A F K GV + H +R AT ++ + Sbjct: 182 AIFLANTGKRISARNVQKRFAEWGIKQGVSSHIHPHKLRHSFATHMLESSGDLRAVQELL 241 Query: 312 GWKTVDQAETYTKGADRIRLG 332 G + + YT D L Sbjct: 242 GHANLTTTQIYTH-LDFQHLA 261 >gi|227552270|ref|ZP_03982319.1| bacteriophage integrase [Enterococcus faecium TX1330] gi|257895152|ref|ZP_05674805.1| phage integrase [Enterococcus faecium Com12] gi|257897764|ref|ZP_05677417.1| phage integrase [Enterococcus faecium Com15] gi|261208892|ref|ZP_05923329.1| phage integrase [Enterococcus faecium TC 6] gi|289567444|ref|ZP_06447804.1| phage integrase [Enterococcus faecium D344SRF] gi|293378034|ref|ZP_06624211.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium PC4.1] gi|293569081|ref|ZP_06680393.1| site-specific recombinase, phage integrase family [Enterococcus faecium E1071] gi|294616782|ref|ZP_06696529.1| site-specific recombinase, phage integrase family [Enterococcus faecium E1636] gi|227178600|gb|EEI59572.1| bacteriophage integrase [Enterococcus faecium TX1330] gi|257831717|gb|EEV58138.1| phage integrase [Enterococcus faecium Com12] gi|257835676|gb|EEV60750.1| phage integrase [Enterococcus faecium Com15] gi|260077394|gb|EEW65114.1| phage integrase [Enterococcus faecium TC 6] gi|289160757|gb|EFD08697.1| phage integrase [Enterococcus faecium D344SRF] gi|291588262|gb|EFF20098.1| site-specific recombinase, phage integrase family [Enterococcus faecium E1071] gi|291590354|gb|EFF22116.1| site-specific recombinase, phage integrase family [Enterococcus faecium E1636] gi|292643352|gb|EFF61485.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium PC4.1] Length = 380 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 56/361 (15%), Positives = 116/361 (32%), Gaps = 48/361 (13%) Query: 14 ERTRHGKIIYYF------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67 + ++G+ + F G+ IR + A AL + + Sbjct: 7 YKLQNGEKYWGFETYLGKDPKTGKDIRTKRRRFKSKAEA-QIALNRLLVDFKEKQEFKIN 65 Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR 126 TT + L + + + +S + + I+ G+ KI+ + + V Sbjct: 66 VTTFQELYELWIDNYRTR-VKPSSVAVAQRFCKNHILPAFGELRLDKISVSYCQKQVNEW 124 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT--EGIRPWTKEDMQQFKS 184 T + +FK+ V E NP P++ + ++ +TK+ +Q F Sbjct: 125 HKTLKQYGFLRKTTAQIFKFGVAMEVCKDNPMSKTLLPRKIEEEQPLKFYTKDQLQLFLK 184 Query: 185 FWSEGSQPRLAFEFLL--YSGLRCSDSCRAGVQHLQNNIFS-----------------IK 225 E + +L F L Y+G+R S++ + + + Sbjct: 185 NTKENNSVKLYTFFRLLAYTGMRKSEALALQWEDIDYFNKTITIGKTIAQDEFNQVVLQV 244 Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF---------------S 270 + + T++L D +K L + + I + QF + Sbjct: 245 PKTKNSSRTIQLDDFTLKQLRIWQQEQMKIMILYGYNTNSPKQFLFTTNTNKLYYPQVVN 304 Query: 271 IWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGAD 327 W K + + HG R ++ ++GA+ E+ G K + Y Sbjct: 305 DWLDWIYKKTPMEPQITPHGFRHTHCSLLFESGASIKEVQERLGHKDIKTTMNIYAHVTP 364 Query: 328 R 328 + Sbjct: 365 Q 365 >gi|307826179|ref|ZP_07656390.1| integrase family protein [Methylobacter tundripaludum SV96] gi|307732818|gb|EFO03684.1| integrase family protein [Methylobacter tundripaludum SV96] Length = 328 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 44/342 (12%), Positives = 99/342 (28%), Gaps = 30/342 (8%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 ++T+ GK + + R+R + R+ TLK Sbjct: 4 KQTKDGKWLVEIDRKGIPRVRKSIVV-KEDAERFEREYLSMHLARKKDEPTDL--RTLKE 60 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP--- 130 L+ + K +L+ S + D + G+ ++T + R + Sbjct: 61 LVELWYK-YQGINLSDG--ESRKRKLDDMASALGNPQACRLTAEQFVEHRYKRLQSGISA 117 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSV-ERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + + +F + + + ++ + K + + + + ++ G Sbjct: 118 KTVNNQHGYLSAVFNKLRKLKVIDYGNPINEVDFIKIQERQLSYLSVDQIKLLLDTIKIG 177 Query: 190 SQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246 + L +G R ++ R + L N + + K+ T+ L F L Sbjct: 178 CVNQSTWYVAQICLRTGARWGEAERLRFKQLHNCRVTYEFTKSKKTRTIPLDGEFYNDLI 237 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK----SAHGVRKFSATISADAGA 302 K F+ T++ + ++H +R A+ G Sbjct: 238 RWAGYKNPDDRVFTNCIG-------AFRRAVTRSEIELQKGQNSHVLRHSFASHFIMNGG 290 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 L G + Q TY L ++ + Sbjct: 291 NILTLQKILGHADISQTMTYAH------LAPEHLADAVRLNP 326 >gi|322420470|ref|YP_004199693.1| integrase family protein [Geobacter sp. M18] gi|320126857|gb|ADW14417.1| integrase family protein [Geobacter sp. M18] Length = 304 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 40/303 (13%), Positives = 93/303 (30%), Gaps = 30/303 (9%) Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD------------YR 112 R L + + + ++ + R +G+ Sbjct: 4 RTADLDLTGAAEAFCARLSAEGRSPATIAAYRRDLALVARVAGELAPGVVCREVTVGFLD 63 Query: 113 KITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 ++ + + + + +S + ++R F WA V NP S+ + + Sbjct: 64 QVFSAEAVTESKRGPRSAASLHRMKAAVRAFFAWASEAGVVDDNPARSIRMHRLPRKLPV 123 Query: 173 PWTKEDMQQFK-----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227 T + ++ + R E LL +G+R + + + + ++ + Sbjct: 124 FLTTAEKKRLLKELKGRTDFSTLRDRAMIEVLLGTGIRLGELAALNLDDIDLDAKHLRVR 183 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWFKAKAT 278 G + V+ ++ L + + + + ++ Q + Sbjct: 184 AKGNVPQVKFIKTDLRTLLRRYLAERRRHSRPEMEALFLSNRDGRLCQRQIANRLAHWLR 243 Query: 279 KAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 KAG+ K + HG+R AT A + G + V + YT D + Sbjct: 244 KAGIEKELTPHGLRHTFATHLYCATNDLLVVQRALGHRDVSTTQIYTHLVDGQ--LEEAL 301 Query: 337 RRI 339 R+ Sbjct: 302 ERL 304 >gi|49476240|ref|YP_034281.1| site-specific tyrosine recombinase XerC [Bartonella henselae str. Houston-1] gi|49239048|emb|CAF28348.1| Integrase /recombinase xerC [Bartonella henselae str. Houston-1] Length = 326 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 38/276 (13%), Positives = 75/276 (27%), Gaps = 30/276 (10%) Query: 85 GSLAVNSRISFESYFDQI----IRKSGDFD-------YRKITTKHIRSGVESRKHTPSSA 133 +A + ++E Q + G R I + + + S Sbjct: 37 RRMATYTAQAYERDTRQFLFFLCQHLGHTPTFKDLANLRVIDLRAYLAYRRKHDISARSL 96 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE-------DMQQFKSFW 186 + + +R F + R+ +I V PK +P + Q ++ Sbjct: 97 SRGMAGIRSFFNYLSREGIASIPAAKLVRTPKHPKSLPKPLNIKSALHLVKQENQQENEP 156 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--IKTQKTGTIITVELPDGFMKL 244 ++ L G+R S++ + + + T K G V L + Sbjct: 157 WIIARNTAVLMLLYGCGMRISEALSLTPEQFSDPQKTSLFVTGKGGKTRLVPLIKVVYEA 216 Query: 245 LAMTPIGKETFFINNDKQKMNATQ-------FSIWFKAKATKAGVN--KSAHGVRKFSAT 295 + ++N A + G+ + H +R AT Sbjct: 217 IQNYLKCCPYPLLDNQPMFRGARGGPLQPAIIQKTVRNLRAYLGLPETATPHTLRHSFAT 276 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 G + G + + YT D L Sbjct: 277 HLLSRGGDLRTIQELLGHACLSTTQVYTH-VDTKHL 311 >gi|319764396|ref|YP_004128333.1| tyrosine recombinase xerc [Alicycliphilus denitrificans BC] gi|330826617|ref|YP_004389920.1| tyrosine recombinase XerC [Alicycliphilus denitrificans K601] gi|317118957|gb|ADV01446.1| tyrosine recombinase XerC [Alicycliphilus denitrificans BC] gi|329311989|gb|AEB86404.1| tyrosine recombinase XerC [Alicycliphilus denitrificans K601] Length = 320 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 44/292 (15%), Positives = 84/292 (28%), Gaps = 37/292 (12%) Query: 77 EYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHTPSS- 132 +Y + LA + + ++ + D ++T H+R V S Sbjct: 17 QYLEHVRVEKRLAARTLTLYTLDLQRLAAFAADAGLPLLRLTGAHVRRFVAQMHAAGRSG 76 Query: 133 --AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 L+ R + WA RQ V NP V PK + ++ + G+ Sbjct: 77 RGIALILSGWRGFYAWAARQGLVPHNPVQDVRAPKAPKPLPKALPVDEAVRLAEHEESGA 136 Query: 191 QPRL------AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------GTI 232 P L E L GLR + V + Sbjct: 137 DPWLEARDAAIVELLYGCGLRVGELVGLDVAPSPAAHQQGRGWIDLQAGEAHVFGKGAKR 196 Query: 233 ITVELPDGFMKLLAMTPIGKETFF----------INNDKQKMNATQFSIWFKAKATKAGV 282 +V + + L + F + +++A + + ++ +AG+ Sbjct: 197 RSVPVGRAAAEALRGWLAVRAQPFGGAAADAALFVGRRGARLSAQSVWLRLRQRSQRAGL 256 Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R A+ + + G + + YT+ D L Sbjct: 257 TTPVHPHMLRHSFASHLLQSSGDLRAVQELLGHANITTTQVYTR-LDFQHLA 307 >gi|227495411|ref|ZP_03925727.1| possible integrase/recombinase [Actinomyces coleocanis DSM 15436] gi|226830958|gb|EEH63341.1| possible integrase/recombinase [Actinomyces coleocanis DSM 15436] Length = 317 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 43/296 (14%), Positives = 94/296 (31%), Gaps = 35/296 (11%) Query: 66 KKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSG 122 + T +++ + + ++ + ++ + + G D ++ T I + Sbjct: 5 RANGTSSDVLNGFLDYLTVEKGASAHTVAGYRRDLERFLVERGIADTPLAQVDTVAIDAH 64 Query: 123 VESR----KHTPS----SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 + P S + S+R LF++AV ++ ++ +P V++ K + Sbjct: 65 LTQLSLGFAGKPGLSAASIARARASIRALFRYAVSEDILSADPAAEVQQKKLGKHLPKAI 124 Query: 175 TKEDMQQFKSFW-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIKT 226 + E++ G + E L +G R ++ L Sbjct: 125 SLEEIAAMLEVAGQRPGPVGLRDVALIELLYGTGARITEVMNLSPDDLYLAGEFPHVKLF 184 Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--------------NATQFSIW 272 K V L ++ L + + K ++ + Sbjct: 185 GKGRKERLVPLGSFAVQALEDYLLLGRPLLLGKAKTRVAGHPLFLNKRGLSLSRQSAWEI 244 Query: 273 FKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 A AG S H +R AT + GA+ ++ G +V + YTK + Sbjct: 245 ISQTAVAAGCVSEVSPHSLRHSFATHLLEGGASIRDVQELLGHASVTTTQIYTKVS 300 >gi|209560015|ref|YP_002286487.1| Prophage NZ131.3 probable integrase [Streptococcus phage NZ131.3] gi|209541216|gb|ACI61792.1| Prophage NZ131.3 probable integrase [Streptococcus phage NZ131.3] Length = 378 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 66/374 (17%), Positives = 128/374 (34%), Gaps = 46/374 (12%) Query: 14 ERTRHGKII---YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE-YINSPRKKPT 69 E+ +G I YY G+R R + + A E I S + Sbjct: 4 EKQANGNIKFIEYYKDPYTGKRQRAYVTLDRYTKQSETKARRLLNEIIEYRIKSSGDQFV 63 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIRSGVESRKH 128 L+ E++ S ++ + + ++I GD + I + ++ ++ K Sbjct: 64 RFGQLVEEWKTSHS-KTVKARTMKVYRHPIEKIKDFIGDDVLVKNIDARLLQKFIDYLKD 122 Query: 129 TPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED-------- 178 S + + ++ +AVR EY+ NP +V PKRK + Sbjct: 123 RYSDNTINLIKQPLNMMLDYAVRMEYIMSNPMKNVVTPKRKKMSKKQLEDRYLETEQNQK 182 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK---------- 228 + + G+ E + +G+R + H+ IK + Sbjct: 183 IIEQLRNPIYGNHIANFSEIIFLTGMRPGELLALRWDHIDFEKLKIKIEYTLDYTTNGHA 242 Query: 229 ---------TGTIITVELPDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIW 272 G+ T+++P +LL + T FI N + ++ + Sbjct: 243 NAELGSVKNDGSYRTIDIPLRVKELLVEELNYQNTNDLRSDFVFITNKGKHLSINTINRR 302 Query: 273 FKAKATKA-GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330 K + K G+ ++H R T+ A+ G +M G V+ + YT D + Sbjct: 303 IKKTSEKLYGIVITSHSFRHAHITLLAELGIPLKSIMDRVGHTDVNTTIKVYTHATD--K 360 Query: 331 LGIKNSRRISSVVD 344 +G + +I+ V Sbjct: 361 IGKQMMDKINKFVP 374 >gi|254449557|ref|ZP_05062994.1| phage integrase [Octadecabacter antarcticus 238] gi|198263963|gb|EDY88233.1| phage integrase [Octadecabacter antarcticus 238] Length = 315 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 45/276 (16%), Positives = 83/276 (30%), Gaps = 19/276 (6%) Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 +++ TT L + ++ ++ G T +R+ Sbjct: 22 KEEKTT--ALRQRMIEDMRIRAIGETTQKGHIRAIKHFATFLGRSP-DTATPDELRAYQL 78 Query: 125 SRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 T S+ + S+R+ F +E + + + E++ Sbjct: 79 HMTDTEVTTSTFNTRIVSLRLFFGVTCGREEMKRYMQFRRKP----RRLPVVLSVEEIGD 134 Query: 182 FKSFWS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELP 238 + G R A +GLR S+ C V + + + K G L Sbjct: 135 LLAAVPGPGLTYRAALGISYGAGLRASEVCHLKVVDIDSGRMLIHVDEGKNGKDRKAMLS 194 Query: 239 DGFMKLLAMTP----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292 G + LL F ++ Q + F + AG+NK + H +R Sbjct: 195 PGLLDLLREYWLEARPEGWLFPGKPKINPLSPRQLNRAFTSAKHMAGINKPVTLHTLRHS 254 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 AT +AG + G + YT A + Sbjct: 255 FATHLLEAGTDVRVIQVLLGHSKLSTTARYTHVATK 290 >gi|163782910|ref|ZP_02177906.1| phage integrase family protein [Hydrogenivirga sp. 128-5-R1-1] gi|159882031|gb|EDP75539.1| phage integrase family protein [Hydrogenivirga sp. 128-5-R1-1] Length = 361 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 47/341 (13%), Positives = 101/341 (29%), Gaps = 29/341 (8%) Query: 18 HGKIIYYFRKGHGRRI-RLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76 HG + F RL +E A A T E +K+ + Sbjct: 21 HGSHWFRFTYRGKTYTKRLGRVNELPLTSAKHIAGKLRTQIIENQYLEKKEVPLFSEVAE 80 Query: 77 EYRKSAH--WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPS 131 +Y + + + + E +++ GD + I S + R PS Sbjct: 81 KYFEWYKTERANASRRTIRETERRVKKLVEVFGDKTLDYFSEFLIDSYKQDRIKEGVKPS 140 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 + + L +R + + V++ + ++ K E +R + E+++ + + Sbjct: 141 TVNRELNILRAILR-KVKEWGMYSGDLPRIKTYKVDDERVRYLSPEELKALIDACPDWFK 199 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ-------------NNIFSIKTQKTGTIITVELP 238 P +F +GLR S+ + + + + V Sbjct: 200 P--VVKFACLTGLRASELFSLTWDMVNLSEGYITVPAKYSKTKETKRIPLHPKALEVLRE 257 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATIS 297 + G + + FK KAG+ + H +R A+ Sbjct: 258 VKARQEERWIDYGYVFTNRMGKPYSVEGQGYKRVFKTACEKAGIRDFRFHDLRHTFASYL 317 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338 +G + + + + Y L ++ R+ Sbjct: 318 VMSGVDFYTVQELMRHSSPRMTKRYAH------LSPEHIRK 352 >gi|83951798|ref|ZP_00960530.1| tyrosine recombinase XerD [Roseovarius nubinhibens ISM] gi|83836804|gb|EAP76101.1| tyrosine recombinase XerD [Roseovarius nubinhibens ISM] Length = 314 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 44/289 (15%), Positives = 92/289 (31%), Gaps = 33/289 (11%) Query: 74 LISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDY--RKITTKHIRS---GVESRK 127 I+ + + A N+ +++ + + + + + +++ Sbjct: 6 WIALFLDAQAAEMGAAKNTLMAYARDLSDFSQWVENKSLSLATLQQSDVEAYLVHCDAQG 65 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185 S+ + L++++ L+++A + NP L ++ P R + ++ ++ Sbjct: 66 LAQSTRARRLSAVKQLYRFAFDERLRGDNPALRIKGPGRSGRLPKTLSEAEVDGLLQAAR 125 Query: 186 -WSEGSQPRL----AFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPD 239 G RL E L +GLR ++ V + N + K G V L Sbjct: 126 SHGRGPADRLRNTCLMELLYATGLRVTELVSLPVAATRGNPELLMVRGKGGKERMVPLSP 185 Query: 240 GFMKLLAMTPIGKETFFINNDKQ----------------KMNATQFSIWFKAKATKAGV- 282 L ++ ++ + +F + K A AGV Sbjct: 186 PAQVALRDWLAHRDAMEETARQKGLPASPFLFPSRSKDGHLTRHRFYLLIKDLAVAAGVS 245 Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + H +R AT GA + G V E YT + Sbjct: 246 PSKVTPHTLRHAFATHLLANGADLRAIQTLLGHADVATTEIYTHVLEER 294 >gi|23014445|ref|ZP_00054261.1| COG0582: Integrase [Magnetospirillum magnetotacticum MS-1] Length = 394 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 51/332 (15%), Positives = 96/332 (28%), Gaps = 19/332 (5%) Query: 25 FRKGHG-RRIRLPYPHESTFIPAYMSA--LTGSTPKREYINSPRKKPT---TLKWLISEY 78 +R G RRI + + + A A L R T++ L Y Sbjct: 47 YRIGGRQRRITIGSYPDWSVAAARTEAGNLKREVDLGNDPMGERHADRAAPTMRDLWDRY 106 Query: 79 RKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESRKHTPSS---AI 134 ++ A S+ ++++ + G +T I + + + A Sbjct: 107 KRDHLPRK-AARSQADETMMWEKLVLPTLGKHKVGDVTHTDIEALHRDITVSRGTPVRAN 165 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSV-ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193 + + +R F A+R E++ NP P+ K + + Sbjct: 166 RVIEVVRRAFNLAIRWEWIEKNPASGQLRNPEEKRQRYLSPEELSRLSAALTAHHEPVSA 225 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252 A L+ +G R S+ A + + K L + + Sbjct: 226 DAIRMLMLTGARKSEVLGATWEMFDLDAGVWTKPSAHTKQRKEHRVPVSANALTLLKRIR 285 Query: 253 ETFFINNDKQKMNATQ----FSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHEL 307 ET Q + A A + H +R A++ GA+ + Sbjct: 286 ETAEGPYVFPGKGGDQPLTDVKRSWAAVCKAADITGARIHDLRHSFASLLVSGGASLPII 345 Query: 308 MATYGWKTVDQAETYTKGADR-IRLGIKNSRR 338 A G V + Y D +R + + Sbjct: 346 GAMLGHTQVQTTQRYAHLYDEPLRAAADHVGK 377 >gi|269203657|ref|YP_003282926.1| integrase [Staphylococcus aureus subsp. aureus ED98] gi|262075947|gb|ACY11920.1| integrase [Staphylococcus aureus subsp. aureus ED98] Length = 345 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 43/329 (13%), Positives = 100/329 (30%), Gaps = 24/329 (7%) Query: 19 GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP--RKKPTTLKWLIS 76 GK Y K G+R R A + K + + TL+ Sbjct: 8 GKKWQYEFKHEGKRYRKKGFRTK------REANSAGLDKLNELRNGFNIDNGITLEEYFE 61 Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVES--RKHTPSSA 133 + K+ + N+ +++ I + G + KI + + + ++H + Sbjct: 62 NWIKTYKEPVVKENTYRHYKNALQHIQQHKIGKMELSKINKQVYQKFINDYSKEHAKETI 121 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVER----PKRKTEGIRPWTKEDMQQFKSFWSEG 189 + ++R A+ + NP V P + + E + + Sbjct: 122 RKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEKEKFISVTEYEMLKEHVKKKR 181 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-------KTGTIITVELPDGFM 242 ++ LA ++ +G R S + ++H+ +I I M Sbjct: 182 TRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTDTSPRYISIAKSDMKHIM 241 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301 +++ I + + + + K+ + ++H +R + G Sbjct: 242 DVISSFAISYDGYIFKESGFIITLQAINNALKSACRVNNIPIITSHALRHTHCSYLLAKG 301 Query: 302 ATAHELMATYGWKTVD-QAETYTKGADRI 329 + H + G K + Y+ + Sbjct: 302 VSIHYISKRLGHKNIAITTSVYSHLLEEK 330 >gi|251780259|ref|ZP_04823179.1| site-specific recombinase, phage integrase family [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084574|gb|EES50464.1| site-specific recombinase, phage integrase family [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 329 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 45/295 (15%), Positives = 99/295 (33%), Gaps = 48/295 (16%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRK--------------SGDFDYRKITTKHIRSGV 123 Y ++ + + N+ +++ R D D I + ++S Sbjct: 23 YLETI--KNKSSNTIAAYKKDLTIFFRFMKLYRGIVKDKKIEFEDIDITDINDEFLKSIK 80 Query: 124 ES------------RKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEG 170 R ++ + + + +++ FK+ + + + NP +E PK Sbjct: 81 LRDLYAFMSFIEKYRNNSAYARARKVATLKSYFKFLQGKAKIIVDNPTTELESPKINKRQ 140 Query: 171 IRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226 T + S + + + L G+R S+ C ++ ++N+I I Sbjct: 141 PVYLTLDQSIHLLSSLDKNNKNYARDYCILTLFLNCGMRLSELCGISIEKIRNDILVIIG 200 Query: 227 QKTGTIITVELPDGFMKLLAMTPI----------GKETFFINNDKQKMNATQFSIWFKAK 276 + TV L + +K + K+ F+++ + +N I K Sbjct: 201 KGN-KERTVYLNEACLKSIENYMRIRDDSKALPEYKKFLFLSSHNKPINQRTVEIMIKKH 259 Query: 277 ATKAGV---NKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD 327 AG+ + H +R +AT+ G L G + + + YT + Sbjct: 260 IKNAGLTDGKYTPHKLRHTAATLMYKYGDVDIRSLQNILGHENISTTQIYTHVDN 314 >gi|220904240|ref|YP_002479552.1| integrase family protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868539|gb|ACL48874.1| integrase family protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 373 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 44/287 (15%), Positives = 93/287 (32%), Gaps = 37/287 (12%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVESRK 127 LI + + +R ++ Q+ + +T +H+++ + Sbjct: 66 LIEAFLAWMTVQKGASEATRKAYAVDLAQLAEFLRGQEIDLGQPQTVTRRHMQAFLAWLF 125 Query: 128 HTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 SS + L + R F++ +R VA N V P+++ R ++ Sbjct: 126 RKGEAKSSMARKLAAARSFFRFQMRGGKVAENVAAQVRNPRQEKRHPRALNVDETFALLD 185 Query: 185 F-----------------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227 + E L SGLR S++ V +Q + ++ Sbjct: 186 SATGPGGKRGPVAGSAEEERILCRDLALAELLYGSGLRISEALSLDVDDVQLSSRVLRVM 245 Query: 228 KTGTI-----ITVELPDGFMKLLAMTP----IGKETFFINNDKQKMNATQFSIWFKAKAT 278 G+ ++ L P + F+ ++N + + + Sbjct: 246 GKGSRERLAPLSDTSFSCLKAWLEERPLLALPDEAALFVGARGARLNRREAARIVERLCR 305 Query: 279 KAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 +AG+ + H +R AT +AGA + G + + + YT Sbjct: 306 RAGLTFTVSPHSLRHSFATHLLEAGADMRSVQELLGHQRLTTTQRYT 352 >gi|84502972|ref|ZP_01001074.1| tyrosine recombinase XerD [Oceanicola batsensis HTCC2597] gi|84388717|gb|EAQ01588.1| tyrosine recombinase XerD [Oceanicola batsensis HTCC2597] Length = 315 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 45/301 (14%), Positives = 103/301 (34%), Gaps = 33/301 (10%) Query: 74 LISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSG---VESRK 127 IS + ++ + N+ +++ T + + +++ Sbjct: 9 WISSFLEAQAAEAGASRNTLLAYGRDLKDFAGWLERQHHAIDSATRADVEAYLTDCDAQG 68 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + ++ + L+++R LF++A + + + NP + + P R + R T +++ Sbjct: 69 LSQATRARRLSAIRQLFRFAFEEGWRSDNPAIEIRGPGRSRKLPRTLTTDEVGALLDAAR 128 Query: 188 -------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD 239 + + E L +G+R ++ + + + + K G V L Sbjct: 129 TKGRNESDRLRNTCLMELLYATGMRVTELVSLPLAAARGDPRMLLIRGKGGKERMVPLSP 188 Query: 240 GFMKLLAMT---------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-- 282 + LA + F + + + +F I K A AGV Sbjct: 189 PAREALAAWLAAREARDEALPRGARPSRALFPSRSAEGHLTRHRFYILIKEIALAAGVSP 248 Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSRRIS 340 + H +R AT + GA + G + E YT + R+R ++ ++ Sbjct: 249 AKVTPHTLRHAFATHLLENGADLRAIQTLLGHADLATTEIYTHVLEHRLRELVETHHPLN 308 Query: 341 S 341 Sbjct: 309 R 309 >gi|254283555|ref|ZP_04958523.1| hypothetical protein NOR51B_2055 [gamma proteobacterium NOR51-B] gi|219679758|gb|EED36107.1| hypothetical protein NOR51B_2055 [gamma proteobacterium NOR51-B] Length = 391 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 43/337 (12%), Positives = 103/337 (30%), Gaps = 22/337 (6%) Query: 12 TKERTRHGKIIYYFRKGHGRR--IRLPYPHESTFIPAYMSALTGSTPK-----REYINSP 64 ++ + G ++ G+ +++ + + A A T + Sbjct: 38 VRDTSLVGTYYQRYKNAAGKTAHVKIGRASDISLKAARARAQQLRTDIQSGSDPQADTRQ 97 Query: 65 RKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 RK T + Y A + ++ + G +I+ + ++ Sbjct: 98 RKAVPTWNAFFTHSYLPHAKQKKRTWKNDADMHRL--RLGPRFGATPINRISRQEVQQFH 155 Query: 124 ESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + + P++A L +R AV + NP V++ E R ++ +++ Sbjct: 156 NELRESGIAPATADHHLKLLRHALNLAVDWGLLQANPAARVKQFNVFNEVERYLSEVELR 215 Query: 181 QFKS--FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----TIIT 234 + + E A +LL +G R + A + T + + Sbjct: 216 RLLAVLKSHENRPVSCAVLWLLCTGSRVGEMLAAEWPDIDRGNRVWVVHATNSKSKKLRS 275 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNA--TQFSIWFKAKATKAGVN-KSAHGVRK 291 + L D + +L + + AG+ + H +R Sbjct: 276 IPLNDVALGVLDELQTLPRYQPDGRLFIGKRGPLGTINKVWYGIRDAAGLENFTLHCLRH 335 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 A++ ++G + +E+ G Y+ + Sbjct: 336 SHASLLVNSGHSLYEVQRVLGHSDPKVTMRYSHLSQE 372 >gi|116255003|ref|YP_770838.1| putative integrase/recombinase [Rhizobium leguminosarum bv. viciae 3841] gi|115259651|emb|CAK11632.1| putative integrase/recombinase [Rhizobium leguminosarum bv. viciae 3841] Length = 288 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 38/265 (14%), Positives = 88/265 (33%), Gaps = 17/265 (6%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS- 132 L +L+ ++ S+ + R G ++ + +R+ + S Sbjct: 9 LRRRMIDDMTIRNLSPATQRSYLHAVTKFSRYFGRSP-DRLGLEDVRAFQVHLVSSGLSW 67 Query: 133 --AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 Q + ++R F + + + + +++ +F Sbjct: 68 PALNQTVCALRFFFGVTLGHGEIPERIA----YARTPAKLPTILNGDEIVRFLEAV-PSL 122 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMT 248 + R A +GLR S++ V+ + I+ K G V L + +L + Sbjct: 123 RTRTALTTAYAAGLRASEAVHLKVRDIDGERGIIRVEHGKGGKDRNVMLSAQLLAILRVY 182 Query: 249 P----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302 F ++ + ++ ++ T AG++K + H +R AT ++G Sbjct: 183 WRLARPEVWLFPGRDETKPIDVQVLYSACRSACTAAGIDKRVTVHTLRHSFATHLLESGT 242 Query: 303 TAHELMATYGWKTVDQAETYTKGAD 327 + G + YTK ++ Sbjct: 243 DIRIIQVLLGHNNLSTTARYTKVSN 267 >gi|322378156|ref|ZP_08052641.1| prophage L54a, integrase [Streptococcus sp. M334] gi|321280886|gb|EFX57901.1| prophage L54a, integrase [Streptococcus sp. M334] Length = 379 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 57/370 (15%), Positives = 122/370 (32%), Gaps = 48/370 (12%) Query: 18 HGKIIYY---FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE------YINSPRKKP 68 +GK YY F + ++ S A A K E K Sbjct: 8 NGKYRYYEKYFDLEESKWKQVSITLTSKTRQAQKQARMLLEEKIENKKENIEKEKTEVKK 67 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128 T+K + EY K L ++ S + IRK D+ +T++ +++ + Sbjct: 68 ITVKEVYEEYLKIRE-SELKRSTFKSQKYTIIGEIRKLEDYLLVNVTSRIVQNILLELPC 126 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ-------- 180 + + + FK+ + Y++ NP +V PKRK + K++ Sbjct: 127 SAEHRKNKKVLLNLFFKYCLNVGYISENPIDNVVLPKRKKNLKKVRKKQNKYLTRVEVVQ 186 Query: 181 --QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------- 231 F + + RL EF+ +GLR + ++ + +++ + T Sbjct: 187 YLNFLEKEEKNQRVRLIVEFMYLTGLRFGEVLALTLEDIDFENKTLEVKHTLHTSGSKAE 246 Query: 232 -----------IITVELPDGFMKLLAMT--PIGKETFFINNDKQKMNATQFSIWFKAKAT 278 + + D ++++ + F + F+ + K Sbjct: 247 IFLDSPKSLASYRVIGISDRVLEIIEEYLLMEKEGRFIFTKNGNPFMIFSFNDFLKRSFK 306 Query: 279 KAGVNK------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRL 331 ++G+ K + H R ++ A+ +M G YT ++++ Sbjct: 307 RSGIQKEEDFVLTTHVFRHSHISLLAELEVPIKAIMERVGHTNEKMTLGVYTHVTEKMKS 366 Query: 332 GI-KNSRRIS 340 I + ++ Sbjct: 367 NITEKLDKLD 376 >gi|318605374|emb|CBY26872.1| putative bacteriophage integrase [Yersinia enterocolitica subsp. palearctica Y11] Length = 341 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 47/354 (13%), Positives = 95/354 (26%), Gaps = 38/354 (10%) Query: 14 ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + +GK + Y +R+R + + L L Sbjct: 4 RKLPNGKWVCDFYSDGRDSKRVRKTFVTRGEALRFEREQLVQRGDLDIDYTPAESAAQRL 63 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----- 126 K L+S++ + H SL+ + + + GD + + + R Sbjct: 64 KTLVSQWYE-LHGRSLSDG--KARLDKLNILCDNLGDPAVADFDREVFANYRKQRLAGEF 120 Query: 127 ----------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 ++ + +R +F R + L R R++E + Sbjct: 121 SRKPKHGIVKPPKEATVNREHAYLRAVFNELKRLGHWNHANPLDGVRLFRESENELTFLY 180 Query: 177 EDMQQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233 ED + + + S + + L +G R S++ + + N + K+ Sbjct: 181 EDDIKRLLYECDNSSNKDLGIIVRICLATGARWSEAEQLRQAQVMPNKITYINTKSKKNR 240 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFS 293 TV + KL+ F + H +R Sbjct: 241 TVPISAELHKLIPKMKGRLFANA---------YDAFGQAIDRAKLVLPTGQLTHVLRHTF 291 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347 A+ G L G T+ Y+ + S+ D Sbjct: 292 ASHFMMNGGNILVLQQILGHSTIQMTMRYSH------FAPDHLEAAVSLNPYDR 339 >gi|218533191|ref|YP_002424007.1| integrase family protein [Methylobacterium chloromethanicum CM4] gi|218533206|ref|YP_002424022.1| integrase family protein [Methylobacterium chloromethanicum CM4] gi|218525494|gb|ACK86079.1| integrase family protein [Methylobacterium chloromethanicum CM4] gi|218525509|gb|ACK86094.1| integrase family protein [Methylobacterium chloromethanicum CM4] Length = 354 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 48/318 (15%), Positives = 96/318 (30%), Gaps = 16/318 (5%) Query: 17 RHGKIIY-YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75 R G + + FR+ + T AY+ L R + PR + + + Sbjct: 6 RRGDVWWVRFRRNGTHVRKSAKTTRKTEAQAYLERLLAEQAGRARGDVPRHR---FEEAV 62 Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SS 132 Y + + S+ S + +IT + I V +RK T ++ Sbjct: 63 ERYFQETRVR---PKTLSSYRSNSRTLAPSFNALHLDEITRRAIAEFVTARKRTGVTDTT 119 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 + L + V+ R ++ NP + + + R + + + Sbjct: 120 IRRDLAFLSVICSACGRWGWLDTNPVTTFGKRGLREGRPRTRFLTQAEFDRLLAAASPSL 179 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL-----LAM 247 R A + +G+R + + + N + ++T T +P + L Sbjct: 180 RPAITLAVETGMRREELFGLTITAIDLNRREVHLERTKTGSPRRVPLSDKAITTIKGLLD 239 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHE 306 P + ++ F +A V N H +R A+ G + Sbjct: 240 EPGRPRSSYLFCKGDGSRYCDMKKGFGGACRRAKVTNMRWHDLRHTFASWYVQRGGDLYR 299 Query: 307 LMATYGWKTVDQAETYTK 324 L G + Y Sbjct: 300 LSRILGHSGLQMTARYGH 317 >gi|149913845|ref|ZP_01902377.1| tyrosine recombinase XerD [Roseobacter sp. AzwK-3b] gi|149812129|gb|EDM71960.1| tyrosine recombinase XerD [Roseobacter sp. AzwK-3b] Length = 323 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 40/291 (13%), Positives = 91/291 (31%), Gaps = 33/291 (11%) Query: 72 KWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRS---GVES 125 + IS + ++ A N+ ++ + + + ++ Sbjct: 5 RHWISAFLEAQAAELGAAQNTLQAYARDLSDFDAWLASQGDTIEQADQSRVEAYLVHCDA 64 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + ++ + L++++ L+++A + NP ++++ P R + + +++++ Sbjct: 65 QGLARATRARRLSAIKQLYRFAFEERLRDDNPAITIKGPGRSRKLPKTLSEKEVDLLLGA 124 Query: 186 WSEGSQ-------PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVEL 237 + E L +G+R S+ V + N + K G V L Sbjct: 125 ARTHGRSATDRVRNTCLMELLYATGMRVSELVALPVAAARGNPQMLLIRGKGGKERMVPL 184 Query: 238 PDGFMKLLAMT----------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 ++ P F + + +F + K A G Sbjct: 185 SPDARDVMVEWLKLRDAADAAARKAGKPGSPFLFPSSGKIGHLTRHRFYMLIKELAVAGG 244 Query: 282 V---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 V + H +R AT GA + G V E YT + Sbjct: 245 VSPDKVTPHTLRHAFATHLLANGADLRAIQTLLGHADVATTEIYTHVLEER 295 >gi|288959341|ref|YP_003449682.1| integrase/recombinase [Azospirillum sp. B510] gi|288911649|dbj|BAI73138.1| integrase/recombinase [Azospirillum sp. B510] Length = 321 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 39/283 (13%), Positives = 85/283 (30%), Gaps = 30/283 (10%) Query: 75 ISEYRKSAHWGSLAVNSRISFESY----FDQIIRKSGDFDYR-----KITTKHIRSGVES 125 + +S ++ ++ ++ + + G + R+ + Sbjct: 26 WRRWLESEKV--VSRHTLSAYTADVAEFLRFLTEFHGGSPPSLNDLGDLKAADFRAWMSR 83 Query: 126 RKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT------- 175 +S + L ++R LF+W R + ++ PK K RP T Sbjct: 84 LAMDGLVGASRARKLAAVRNLFRWMDRGGRLHNPAVATLATPKVKRPAPRPLTEIDADRL 143 Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 E+ ++ + G + R F L GLR S++ + T K + Sbjct: 144 LEEAEREREEPWIGKRDRALFTLLYGCGLRISEALGLAARDAPLGDTLRVTGKGRKDRMI 203 Query: 236 ELPDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKAGVN--KSA 286 + + + F+ ++NA+ + G+ + Sbjct: 204 PILPAVTEAVRAYLDSCPFTLAPDGPLFVGTRGGRLNASIAQHQMQKLRALMGMPDNATP 263 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 H +R AT G + G ++ + YT + Sbjct: 264 HALRHSFATHLLADGGDLRAIQDLLGHASLSTTQRYTDVENEQ 306 >gi|58696879|ref|ZP_00372392.1| tyrosine recombinase XerD [Wolbachia endosymbiont of Drosophila simulans] gi|225630697|ref|YP_002727488.1| site-specific recombinase, phage integrase family [Wolbachia sp. wRi] gi|58536905|gb|EAL60089.1| tyrosine recombinase XerD [Wolbachia endosymbiont of Drosophila simulans] gi|225592678|gb|ACN95697.1| site-specific recombinase, phage integrase family [Wolbachia sp. wRi] Length = 328 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 43/307 (14%), Positives = 94/307 (30%), Gaps = 45/307 (14%) Query: 74 LISEYRKSAHWGSLAV-NSRISFESYFDQIIRKS--GDFDYRKITTKHIRSG----VESR 126 I+ Y + A N+ S+ S Q + +I+ + Sbjct: 14 YITYYIDALASERFAAQNTLESYRSDLHQFEEFLLESGTTLVGVNKTNIKDYVKSLCTQK 73 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV----ERPKRKTEGIRPWTKEDMQQF 182 K+ SS + +++M+ +K + NP + + PK + + E++ Sbjct: 74 KYKSSSISRKISAMKNFYKCLFNDGIIDFNPAPANDAELKNPKVSRPLPKYLSVEEIFLL 133 Query: 183 KSFWSEG----------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-------NIFSIK 225 + + + L SG+R S+ + + + + I Sbjct: 134 MDTVRKSASESNKEISSKRLCAILDILYSSGMRVSELISMKLCEVSHLINSNNKECYIII 193 Query: 226 TQKTGTIITVELPDGFMKLLAMT-----------PIGKETFFINNDKQKMNATQFSIWFK 274 K+G + + ++ L F + + + + K Sbjct: 194 KGKSGRERQILFNEQALQSLRNYLSVRDNLISKEKESDWLFPGDKPNKPITRQRVGQLMK 253 Query: 275 AKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI-- 329 A K ++ S H +R AT ++GA + G + + YT A+ Sbjct: 254 ELARKCNIDENKISPHVIRHSFATHLLNSGANIVLIQKVLGHTNLSTTQIYTHIANEKLK 313 Query: 330 -RLGIKN 335 +L + Sbjct: 314 DKLADSH 320 >gi|192288610|ref|YP_001989215.1| site-specific tyrosine recombinase XerC [Rhodopseudomonas palustris TIE-1] gi|192282359|gb|ACE98739.1| integrase family protein [Rhodopseudomonas palustris TIE-1] Length = 323 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 38/290 (13%), Positives = 85/290 (29%), Gaps = 34/290 (11%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRSGVES 125 ++++ L+ + ++ Q ++ + + ++ +R+ + + Sbjct: 24 MTKWLSHLRAERRLSGKTLEAYARDVRQFLQFLAEHWGGEVTLGRFARLEATDVRAFMAA 83 Query: 126 RK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK------ 176 R+ S ++ L MR ++ R+ + SV PK K +P Sbjct: 84 RRADEIAGRSLMRALAGMRSFGRFLEREGKGRVGALASVRAPKIKKSLPKPLPIAAAKRL 143 Query: 177 ---EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233 ++ + + L SGLR S++ + + G Sbjct: 144 ADADERAGEERETWVLIRDAAVMALLYGSGLRISEALGLKRRDVPAAGKGDTLIVHGKGN 203 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQ----------KMNATQFSIWFKAKATKAGVN 283 + +LA N ++ + + G+ Sbjct: 204 KTRMVPVLQNVLAQIAEYAAACPYNLPPDGPMFVGARGGPLSPRIIQLAMERLRGGLGLP 263 Query: 284 --KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 + H +R AT G + G ++ + YT G D RL Sbjct: 264 DSATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQVYT-GIDTERL 312 >gi|115334655|ref|YP_764501.1| DNA integration/recombination protein [Geobacillus phage GBSV1] gi|155042957|ref|YP_001425624.1| DNA integration/recombination /inversion [Bacillus virus 1] gi|297528601|ref|YP_003669876.1| integrase [Geobacillus sp. C56-T3] gi|84688605|gb|ABC61301.1| DNA integration/recombination protein [Geobacillus phage GBSV1] gi|115529861|gb|ABJ09640.1| DNA integration/recombination /inversion [Bacillus virus 1] gi|297251853|gb|ADI25299.1| integrase family protein [Geobacillus sp. C56-T3] Length = 394 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 54/389 (13%), Positives = 117/389 (30%), Gaps = 59/389 (15%) Query: 12 TKERTRHGKIIYY-----FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 K +T+ G+ + G+R T A ++A + + Sbjct: 5 QKYKTKDGEKWMFKMDVGIDPATGKRKTTTRRGFKTKKEAQLAA-AKLYDEINNGGYVKD 63 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 K E+ + +++ + + ++R G+ + +T K + + Sbjct: 64 TNILFKDFAQEWLAIYSETA-KISTIRARKHELGHLMRYFGNLKLKDVTRKMYQDMLLDL 122 Query: 127 KHTPSSAIQ---FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 K + T+ R++FK A+ E + NP + PK+K + +F Sbjct: 123 KKKGYADNTLDGIHTTGRMIFKKAMELELINSNPTEYAKVPKQKKTVEDIESGNKDMKFL 182 Query: 184 SFWSEGSQPRLAFEFLL-----------YSGLRCSDSCRAGVQHLQNNIFSI-------- 224 + A E L Y+G+R + + + +I Sbjct: 183 EKHELALFLKTAQEHGLAMDYVVFSTLAYTGMRLGELLALQWKDINFKEHTIAITKTLYS 242 Query: 225 -----------KTQKTGTIITVELPDGFMKLLAMT--------------PIGKETFFINN 259 + G+I T+++ + LL F Sbjct: 243 PRNNERYYQLLPPKTQGSIRTIKVDPNIISLLKKHKAEQNEIKLRMGELYHDLGFVFARP 302 Query: 260 DKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVD 317 + I K A ++K + H +R ++ +AG E+ G ++ Sbjct: 303 SGFPEVPKKIEIRMKRLLRIANIHKHVTPHSLRHTHTSLLIEAGVGIKEIQQRLGHADIE 362 Query: 318 QAE-TYTKGADRIRLGIKNSRRISSVVDS 345 Y L + S++ S ++ + Sbjct: 363 TTMNIYAHLT--KDLEERASQKFSELMSN 389 >gi|300114658|ref|YP_003761233.1| integrase family protein [Nitrosococcus watsonii C-113] gi|299540595|gb|ADJ28912.1| integrase family protein [Nitrosococcus watsonii C-113] Length = 321 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 50/316 (15%), Positives = 104/316 (32%), Gaps = 16/316 (5%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 R R RK ++I + ++ + + + ++ + T + Sbjct: 5 RKRGNSWNVQIRKRGHKQIT-KSFKDRKLALTWIKKVENEMERGVFQDTTEAQRITFNTI 63 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS--S 132 + +Y++ A ES + GD+ IT + + R + + + Sbjct: 64 LDKYKQRALITKRG---IAQEESRIKYLKEWLGDYSLAGITPAVLSKFRDWRGLSVAAQT 120 Query: 133 AIQFLTSMRVLFKWAVRQEYV---AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 L+ + + +A++ NP + PK R + + SE Sbjct: 121 VKHDLSLISRIINYAIKDLGYSLPYGNPVQQIRMPKIPRGRTRRLEPGEQELLLENASES 180 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249 QP F L + +R + + + ++ +T T I +P + Sbjct: 181 LQP--VILFALETAMRRGEIANMEWRDVDLKQRTLHIPETKTGIPRTIPLSSEAI----K 234 Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308 I KE K++A + F KAG+ + H +R + + + G E+ Sbjct: 235 ILKEIPLGFGPIFKVHADSMTKAFDRATNKAGIEDLRFHDLRHEATSRLFEKGLNHTEVA 294 Query: 309 ATYGWKTVDQAETYTK 324 + G K + YT Sbjct: 295 SITGHKDLKMLLRYTH 310 >gi|304316783|ref|YP_003851928.1| integrase [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778285|gb|ADL68844.1| integrase family protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 288 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 36/263 (13%), Positives = 92/263 (34%), Gaps = 20/263 (7%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESRKHTP 130 +Y K+ L+ N+ S++ Q + + ++ I + + KH Sbjct: 6 QAFIDYLKND--KKLSDNTVDSYKRDIIQFLEYLEKINIGCFEVKKATIINYMNLLKHKN 63 Query: 131 S---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + + L+S++ +++ + P +++ PK + + + + + + S+ Sbjct: 64 RSQATISRHLSSIKSFYQYLFMNRLIDEEPAYTLDAPKIERKVPVTLSIDQVDKLLSYEF 123 Query: 188 E----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 E G + + E L +GL+ S+ + + N K+ + + + + Sbjct: 124 EKSEKGLRDKAIIEVLYATGLKVSELISLRIDDVNLNYGY-IYCKSAKERFIPIGESAVD 182 Query: 244 LLAMTP------IGKETFFINNDKQKMNATQFSIWFKAKATKA--GVNKSAHGVRKFSAT 295 L + F+N + + K G + + +R+ A Sbjct: 183 ALQNYMSVRKNIKNNDHLFLNMRGEALTRQGCWKIIKEYTDIVNPGFDITPSILRRSFAK 242 Query: 296 ISADAGATAHELMATYGWKTVDQ 318 + GA + G+K+V+ Sbjct: 243 HLLENGADIRSVQEMLGYKSVNS 265 >gi|146307138|ref|YP_001187603.1| phage integrase family protein [Pseudomonas mendocina ymp] gi|145575339|gb|ABP84871.1| phage integrase family protein [Pseudomonas mendocina ymp] Length = 335 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 43/313 (13%), Positives = 90/313 (28%), Gaps = 18/313 (5%) Query: 19 GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78 G+ GRR R + + + + P+ + L L + Y Sbjct: 9 GRWKVDVEPIKGRRFRKTFKTKGEAQRFEATCRANCIESPAWTPKPKDRRR-LSELCTRY 67 Query: 79 RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQ 135 + H +LA + + + GD K+T + + Sbjct: 68 HE-LHGHALADG--AAILRTLQNLAKDLGDPIAVKLTGNAFCETRNALLKAGIQGKTLNN 124 Query: 136 FLTSMRVLFKWAVRQEYV-AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR- 193 L ++ +F R + NP V + + I + + + E + Sbjct: 125 RLGYLKAMFNELHRLGDIDYPNPLAKVRPLRLQERPISFLSTCQIAELLDALDERTTSPG 184 Query: 194 --LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251 L L +G R ++ + ++N + + K+ ++ + K L + Sbjct: 185 IGLIARVCLSTGARWGEAQALTPERVRNGMVTFANTKSKRTRSIPIDSALEKALHVYFKR 244 Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATY 311 F FS + + K ++ H +R A+ G L Sbjct: 245 HGLFTNCML-------TFSRVLEKTSIKLPAGQATHVLRHTFASHFVMRGGNILTLQKIL 297 Query: 312 GWKTVDQAETYTK 324 G ++ Y Sbjct: 298 GHTSLAMTMRYAH 310 >gi|289643920|ref|ZP_06476023.1| tyrosine recombinase XerD [Frankia symbiont of Datisca glomerata] gi|289506249|gb|EFD27245.1| tyrosine recombinase XerD [Frankia symbiont of Datisca glomerata] Length = 323 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 56/315 (17%), Positives = 98/315 (31%), Gaps = 42/315 (13%) Query: 74 LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHT 129 ++ + LA NS +++ + + G + + + + Sbjct: 8 VVERFLDHLAGERGLARNSVLAYRRDLRRYLEHLSLRGVRSLADVDESEVAEFAATLREG 67 Query: 130 P--------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 SS + L S+R L ++A R+ V + V P R T + + Sbjct: 68 AGEHPPLAASSVARMLVSVRSLHRFAAREGEVTSDVSRPVRPPTPPRRLPRALTVDQVVA 127 Query: 182 FKSF------------WSEGSQPRLAF---EFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226 +EGS+ A E L +G R S++ V L + S++ Sbjct: 128 VLRAASTSAAGGPGGDPAEGSRQLRAVALLELLYGTGARISEAVGLDVDDLDLDAASVRL 187 Query: 227 -QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKA 275 K G V L + LA + + + + Sbjct: 188 LGKGGRARVVPLGRYAGEALAAYLVRARPVLASRRASPAVFLSRRGTRLSRQSAWTVLRT 247 Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT-KGADRIRL-- 331 A AGV S H +R AT D GA + G +V + YT DR+R Sbjct: 248 AAVAAGVEGVSPHVLRHSFATHLLDGGADVRVVQELLGHASVSTTQIYTLVTVDRLREVY 307 Query: 332 GIKNSRRISSVVDSD 346 + R + + + Sbjct: 308 ATSHPRALGTSRPAQ 322 >gi|150398130|ref|YP_001328597.1| site-specific tyrosine recombinase XerC [Sinorhizobium medicae WSM419] gi|150029645|gb|ABR61762.1| phage integrase family protein [Sinorhizobium medicae WSM419] Length = 313 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 42/284 (14%), Positives = 79/284 (27%), Gaps = 30/284 (10%) Query: 77 EYRKS-AHWGSLAVNSRISFESYFDQIIRKS-GDF-------DYRKITTKHIRSGVESRK 127 + S A L+ + ++E Q + G D R + +R + R+ Sbjct: 20 RWLASLAEERRLSGKTVEAYERDTRQFLTFLTGHLAGPPRLSDIRALRPADLRGFLAQRR 79 Query: 128 HTPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED------ 178 + A L +R ++ + +V PK+ +P T D Sbjct: 80 KGGAGARTLGRGLAGLRSFLRYLEKNGLANAAGAGAVRSPKQPKSLPKPLTDRDALKVVT 139 Query: 179 -MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVE 236 Q ++ L GLR +++ S++ G V Sbjct: 140 TDSQLAEEPWIAARNAAVLTLLYGCGLRIAEALDLTPADFTETARSLRVTGKGGKTRIVP 199 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-------FSIWFKAKATKAGVN--KSAH 287 L + + + A + + G+ + H Sbjct: 200 LIAAAAEAVTTYRKLCPYHIEAGEPIFRGARGAKLQPAIIQREMQKLRSALGLPDSATPH 259 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +R AT G + G ++ + YT G D RL Sbjct: 260 ALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYT-GVDSARL 302 >gi|319955952|ref|YP_004167215.1| integrase family protein [Nitratifractor salsuginis DSM 16511] gi|319418356|gb|ADV45466.1| integrase family protein [Nitratifractor salsuginis DSM 16511] Length = 284 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 40/268 (14%), Positives = 85/268 (31%), Gaps = 16/268 (5%) Query: 72 KWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGVES 125 + + ++ + + ++E Q+++ G I R Sbjct: 2 EEYVDDFLDYLFRIRGYSERTVATYELPLRQMLQYHRLKREGKQLILDIMPLRRRIASN- 60 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 TP + + L+++R ++ Q + E K +P + +++ Sbjct: 61 ---TPRTVAKKLSAVRSFVRYLQDQRNL-SILLEGDESVKVPRTLPKPIEERYIREVLEA 116 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 RL L GLR S+ + + K G + LP +++L Sbjct: 117 --ADPTERLILGLLYGMGLRISELAGLRREQIDREWIR-IHGKGGKTRQLPLPQAVLQML 173 Query: 246 AMTP--IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGAT 303 + K ++A Q + G+ + H +R AT D GA Sbjct: 174 DHYLALHPAGVYLFEKGKAPLSAAQIRYRVQKLFRSRGIKATPHQLRHSFATHLLDHGAR 233 Query: 304 AHELMATYGWKTVDQAETYTKGADRIRL 331 ++ G ++ + YT+ +L Sbjct: 234 ISDVSELLGHASMATTQIYTQLGSSRKL 261 >gi|183984816|ref|YP_001853107.1| prophage integrase [Mycobacterium marinum M] gi|183178142|gb|ACC43252.1| prophage integrase [Mycobacterium marinum M] Length = 385 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 42/349 (12%), Positives = 96/349 (27%), Gaps = 34/349 (9%) Query: 6 RLPPFVTKERTRHGKIIYYFRK-------GHGRRIRLPYPHESTFIPAYMSALTGSTPKR 58 +P + K G+ Y R G A+ + G Sbjct: 4 SVPRGIRKRTNSAGQARYQVRYLVRDPNSPSGWVETSSTFATMREARAFKADRDGEAAIG 63 Query: 59 EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTK 117 PR +L + ++Y S ++ + + +++ +I + G +I+ K Sbjct: 64 ARRFDPRLGRASLSAIWTQYSASKQPA-VSPKTWSGYAQHWELRISPRFGHVPVDEISRK 122 Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 ++ + P + + L +R + A + INP V + + Sbjct: 123 DVQQFIGGLTVGPWAKLATLRLLRSILDMAREDGRIHINPAQGVSSGRIPARERHRYLSA 182 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------------NNIFSIK 225 + L ++GLR S+ V + ++ Sbjct: 183 TEVAALAHACGDQGD--IVTILAFTGLRWSELVGLRVGDIDLKARRLYVRQAAPDVEGRI 240 Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ---------FSIWFKAK 276 +++ + ++ + + Sbjct: 241 IVGPPKTRAAVRTVPLPRIVIDALKPRIENRSTKEQAITSPNGGFLRSNNWRRHTHWNKA 300 Query: 277 ATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYT 323 K G+ + H +R A+++ +GA + T G T Y+ Sbjct: 301 LKKTGLAPLTIHDLRHTYASLARKSGADLRYVQKTMGHSTPTVTANIYS 349 >gi|41407506|ref|NP_960342.1| site-specific tyrosine recombinase XerD [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395859|gb|AAS03725.1| hypothetical protein MAP_1408 [Mycobacterium avium subsp. paratuberculosis K-10] Length = 313 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 43/282 (15%), Positives = 87/282 (30%), Gaps = 36/282 (12%) Query: 78 YRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSGVESRKHT-PSS 132 Y +A N+ S+ + + D D K+ + + + + P + Sbjct: 13 YLDHLTIERGVAANTLSSYRRDLRRYTKHLSDRGISDLAKVGEDDVSEFLVALRRGDPDT 72 Query: 133 ---------AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 A + L ++R L ++ + ++ +V P + T + + Sbjct: 73 GAAALSAVSAARALIAVRGLHRFLAAEGLAELDVARAVRPPTPGRRLPKSLTIDQVLALL 132 Query: 184 SF--------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIIT 234 + R E L +G R S++ V + S+ K G Sbjct: 133 EAAGGESPADGPLTLRNRALLELLYSTGARISEAVGLDVDDVDTQARSVLLRGKGGKQRL 192 Query: 235 VELPDGFMKLLAMTPIGKET-----------FFINNDKQKMNATQFSIWFKAKATKAGVN 283 V + + L + F+N +++ + A +AG+ Sbjct: 193 VPIGRPAVAALDAYLVRGRWELARRGRGTPAIFLNVRGGRLSRQSAWQVLQDAAERAGIT 252 Query: 284 --KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 S H +R AT + GA + G +V + YT Sbjct: 253 SGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYT 294 >gi|52841304|ref|YP_095103.1| integrase, phage related [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628415|gb|AAU27156.1| integrase, phage related [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 393 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 55/371 (14%), Positives = 111/371 (29%), Gaps = 35/371 (9%) Query: 10 FVTKERTRHGKIIYYFR---KGHGRRIRLPYPHESTFIPAYM-------SALTGSTPKRE 59 + G +++R G +++ L + A G P Sbjct: 25 GLGIRVMPSGNKSWFYRFSMNGKRQKMTLGKYPAISLKQAREYLAKAQSLKEQGINPIEN 84 Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLA-VNSRISFESYFDQIIRKSGDFDYRKITTKH 118 K+ T LI + ++ + ++ + II GD K+ TK Sbjct: 85 TKLEKLKEDNTFSKLIQSWYENYAVKNRKQPRPIK-YQIDSE-IIPLLGDTVLDKLQTKD 142 Query: 119 IRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE--------RPKRKT 168 I ++ P A + L++++ + +AV + Y+ NP ++ +P+ + Sbjct: 143 ITIALDKIVQRGAPIHANRILSTIKQVLNYAVSRGYIQYNPATNIRSRDIGGIEKPRERV 202 Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228 RLA + ++ +G+R + A Sbjct: 203 LSPEEIRIIWKFLESDKSQMSESARLAIKVIILTGVRTGEIRLAQWHQFDFEQSLWTIPP 262 Query: 229 TGTI----ITVELPDGFMKLLAMTPIG---KETFFINNDKQKMNATQFSIWFKAKATKAG 281 + + + L + KLL M+ K + G Sbjct: 263 EHSKGGITVKIHLSELTKKLLLQFKEQSVSPFVIPGITIDVPMSKDALPRAIKRIQNRVG 322 Query: 282 VN-KSAHGVRKFSATISADA-GATAHELMATYGWKTVDQAETYTKGA---DRIRLGIKNS 336 + +AH +R+ AT ++ + G K TY K R + Sbjct: 323 IPEWTAHDLRRTFATQLGESLNIDPVVIEKCLGHKMPRIMATYNKNEMLPQRKEALDSWA 382 Query: 337 RRISSVVDSDD 347 I+ ++ S D Sbjct: 383 NHIARLISSKD 393 >gi|327405762|ref|YP_004346600.1| integrase family protein [Fluviicola taffensis DSM 16823] gi|327321270|gb|AEA45762.1| integrase family protein [Fluviicola taffensis DSM 16823] Length = 370 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 39/267 (14%), Positives = 85/267 (31%), Gaps = 17/267 (6%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES----RKHT 129 I+ + + ++ ++ +R G IT + +K + Sbjct: 97 AIAVFVAYMQRTRYSESTIKTYSESIGVFLRFVGVKSTNLITNDDLAQFNNEYIIAKKLS 156 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 S Q L ++++ + V+RP+ +K++++Q + Sbjct: 157 ASYQNQVLNAVKLF----CKVHAGVKLDPELVKRPRSAKTLPNVLSKQEVKQLLYATT-N 211 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAM 247 + R+ + GLR S+ + + ++ I K V L ++ L Sbjct: 212 LKHRMMLSVIYACGLRRSELLSLQPKDILSDRLLIHIHQAKGKKDRVVPLSKLLLEQLRE 271 Query: 248 TPIGKETFFINN----DKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301 +K + K TK + K + H +R AT ++G Sbjct: 272 YYKIYRPIKWIFEGEKPGEKYGERSLQLVLKRALTKTNIKKDVTLHWLRHSYATHLLESG 331 Query: 302 ATAHELMATYGWKTVDQAETYTKGADR 328 + G K+ E YT +++ Sbjct: 332 TDIRFIQELLGHKSSTTTEIYTHVSNK 358 >gi|317495918|ref|ZP_07954281.1| phage integrase [Gemella moribillum M424] gi|316914095|gb|EFV35578.1| phage integrase [Gemella moribillum M424] Length = 364 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 43/354 (12%), Positives = 107/354 (30%), Gaps = 38/354 (10%) Query: 11 VTKERTRHGKIIYYFR---------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61 + + + K Y + G +RI Y L + Sbjct: 2 IKEYIDKDNKKYYEIKNHYIGKDIFTGKEKRISKKGFRTKKEAENYCIKLKSEF---LEV 58 Query: 62 NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIR 120 + T + + + + + + S YF I+ + + I + Sbjct: 59 GFKTNQDYTFQDVYDLFIEQYK-RKVKDTTYYSNTKYFKQHILPFFANIKIKDIKLVVCQ 117 Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + K S+ ++ T + ++ +A++ E ++ N + P+ + + ++ Sbjct: 118 KFINDLAKKFKKSTIQRYRTLVNLVLDYAIKLEIISTNYMKYTDIPRAIEKRKDNYYSKN 177 Query: 179 M---QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----- 230 + + F L ++G+R + C + + ++ K Sbjct: 178 ELLEFLRLVKDNFSFEIYCIFRVLAFTGVRRGELCALTWKDVDLKNKTLTVSKNMTFIKG 237 Query: 231 -----------TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279 + + L D + +L I+ + ++ + K K Sbjct: 238 GYRISETKTQASNRVIYLDDETVNVLKQLRKESTFLPIDTSIFDLTISRICYYSKLIHEK 297 Query: 280 A-GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330 + K S HG R AT+ ++G ++ G + + YT + + Sbjct: 298 LPNLKKISVHGFRHTHATLLYESGVDIKDISNRLGHSNIKTTLDVYTHLTEDKK 351 >gi|254451033|ref|ZP_05064470.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 238] gi|198265439|gb|EDY89709.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 238] Length = 368 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 48/343 (13%), Positives = 114/343 (33%), Gaps = 18/343 (5%) Query: 9 PFVTKERTRHGKIIYYFRKGHG--RRIRLPYPHESTFIPAYMSALT-GSTPKREYINSPR 65 + + K Y+ + G +RI + + A +AL R + + Sbjct: 38 KGLVLFVGKRSKTWYFQKDVGGQTKRILIGRFPIISAQAARQTALGFALEMGRGAGKAAQ 97 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 TL+ + Y + +++ + ++ +I+ Sbjct: 98 IGAPTLEAAMEVYLARPKLR--SETNKVGMRAQLTLHLKDWMRLPLDEISKAMTVRRHHD 155 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 +PS+A L S R ++ A R + P +++E + K +G R + Sbjct: 156 MAGSPSAANHVLRSFRAIYNHARRTCDLPECPTMAIEWFEDKPDG-RIIENLKHWRKTID 214 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 R+ +E LL++GLR ++ + + + + K G + + ++L Sbjct: 215 DLPNPIHRVFYELLLFTGLRKTEVFTLKWEQVLEDRIHLPMTKNGRSFDLPISQLHHEIL 274 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAH 305 A + + + + + H R+ AT++ +AG Sbjct: 275 APLRPLSSDWVF------PSPKSETGHITRPVR---LKYNPHMHRRTFATVAMEAGVLEE 325 Query: 306 ELMATYGWKTVDQA-ETYTK-GADRIRLGIK-NSRRISSVVDS 345 + + + YT+ D +R ++ + + +D+ Sbjct: 326 IVGRLLNHTPLSITGQRYTRPSLDALRPSMEIACAELLNRIDN 368 >gi|237719978|ref|ZP_04550459.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4] gi|229450530|gb|EEO56321.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4] Length = 376 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 52/360 (14%), Positives = 106/360 (29%), Gaps = 37/360 (10%) Query: 4 SLRLPPFVTKERTRHGKIIYY---FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60 ++ P + + +G Y +R G L + Sbjct: 9 KVKEPIRLRTKELANGSKSLYLDIYRNGKRTYEYLKMYLIPETDRNARQQNETTMAAANA 68 Query: 61 INSPRKKPTT--------------LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS 106 I S R T L + Y++ N+ +S D + + Sbjct: 69 IKSKRIIELTSGEAGIMNHKDKVYLLDWMQLYKEEQKKRG-KKNT-GQIKSVTDILKEYA 126 Query: 107 GDF-DYRKITTKHIRSGVESR---------KHTPSSAIQFLTSMRVLFKWAVRQEYVAIN 156 G+ +I ++ + S+ + AVR + + N Sbjct: 127 GERFTLNQIDLTFCHGYIDYMLTSYRPKGKPLSASTRNTYYQIFNGALNAAVRAKRILKN 186 Query: 157 P---CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213 P E+PK T E+++ + + + A+ F + GLR SD Sbjct: 187 PFNEMEKSEKPKMPESVRSYMTIEEVRSLIATPMQNEGVKSAYLFSCFCGLRISDIIGLQ 246 Query: 214 VQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272 +++ + + + L P + ++ + + Sbjct: 247 WKNVFIDNGQYRLAVAMQKTKEPIYLPLSNEALKWMPERGDKTADDHVFDL--PSGINQL 304 Query: 273 FKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 K A AG++K + H R AT+ GA + + G +V + Y K ++ + Sbjct: 305 IKPWAKAAGISKRFTFHTARHTFATMMLTLGADLYTVSKLLGHTSVKMTQVYAKIVNKKK 364 >gi|237738614|ref|ZP_04569095.1| phage integrase [Fusobacterium sp. 2_1_31] gi|229424097|gb|EEO39144.1| phage integrase [Fusobacterium sp. 2_1_31] Length = 371 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 45/362 (12%), Positives = 110/362 (30%), Gaps = 39/362 (10%) Query: 15 RTRHGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 R+GK Y +G++IR + ++ + + + + NS Sbjct: 15 VIRNGKTYYKANITVGWDSNGKQIRKSFG---SYKKSVVLDKMNTAKYQAKTNSLSNSDI 71 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFE--SYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127 + L ++ + ++ N+ +E + +IT K ++ + Sbjct: 72 SFGELFKDWIFNFKKIEVSPNTFYEYEASYRLRLMNYSIARKKANQITLKDLQQYFNELQ 131 Query: 128 --HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKS 184 T ++ + + K+A+ Q + + C V + K E I ++K++ + Sbjct: 132 KDFTANTIKKTYIQIHSCIKFAIIQGIMMKDFCPGVTLQKITKKENINVFSKQEQEMVLR 191 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------------- 231 + F Y+GLR + +++N+ I Q Sbjct: 192 TLDKRDIVDCLIYFTFYTGLRLGEVLGLQWSDIKDNMVKITRQYRRNVDVDKVDDRKLTY 251 Query: 232 ---------IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 ++ L + +N + + + + K + Sbjct: 252 TFKELKTKNSAREIPLPDKVQELLKDIPRQGNLIFSNLGKPIEPKKPQRRIASICKKLNI 311 Query: 283 NK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRIS 340 S H +R AT + + G + YT +L + +++ Sbjct: 312 PHRSFHSIRHSYATRLFEMDIPIKTVQVLLGHGDIATTMDIYTHVMKEKKL--EVLDKLN 369 Query: 341 SV 342 ++ Sbjct: 370 NL 371 >gi|229079787|ref|ZP_04212320.1| DNA integration/recombination/invertion protein [Bacillus cereus Rock4-2] gi|228703627|gb|EEL56080.1| DNA integration/recombination/invertion protein [Bacillus cereus Rock4-2] Length = 369 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 48/366 (13%), Positives = 118/366 (32%), Gaps = 44/366 (12%) Query: 17 RHGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + G G+R + + T A + + + TL Sbjct: 7 KRGNKYCIVIDIGPDPETGKRRQKWFSGYKTKKEA-QADVAKKITELNEGTFIEPSKVTL 65 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 K ++ + + S+ ++ ++++ + +I G K+ HI+ ++ Sbjct: 66 KDYLNHWLE-IKSMSIEKSTFAGYKAFINQHVIPSIGMVALHKLNVIHIQKCYKTAIDKG 124 Query: 131 SSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + L ++ AV+Q ++ NP E PK++ I+ WT+E++++F + Sbjct: 125 IANNSILLMHRILKSALNLAVKQNIISRNPADFAEIPKKEKTPIQTWTEEEVKKFLAHSQ 184 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--------------TGTII 233 E S+ + + + +G+R + Q + ++ + + Sbjct: 185 E-SRYHIGYLLAITTGMRLGEVLGLRWQDIDFEKHTVTINQTSGHDNKIKQTAKTNSSKR 243 Query: 234 TVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKAKATK 279 T+ +P+ + L + ++ N + + F F K Sbjct: 244 TIPVPNETIAALKKHKILINKEKLRFGSAYLDQDLINCNEFGRIIKRAHFRKSFIRMTHK 303 Query: 280 AGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSR 337 G+ H +R AT+ G + G + Y+ + + + Sbjct: 304 VGIKEIKFHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLSVYSHVLPN--MQEEAVK 361 Query: 338 RISSVV 343 + Sbjct: 362 NFGKSI 367 >gi|168214027|ref|ZP_02639652.1| prophage LambdaBa04, site-specific recombinase, phage integrase family [Clostridium perfringens CPE str. F4969] gi|170714519|gb|EDT26701.1| prophage LambdaBa04, site-specific recombinase, phage integrase family [Clostridium perfringens CPE str. F4969] Length = 368 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 54/347 (15%), Positives = 110/347 (31%), Gaps = 36/347 (10%) Query: 18 HGKIIYYFRKGH----GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 G G+ +RIR+ T A S+ P+ K LK Sbjct: 9 KGNWQVVISLGNDPVTKKRIRVKKQGFKTKKEAEKFVNEYSSKVDNGFLLPKSKDIYLKD 68 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR-----K 127 I ++ + S+ +N+R ++ S + II G++ ++ T I++ Sbjct: 69 FILDWFHNHKVLSIGINTRNNYLSRIETYIIPLLGNYKLTELDTLTIQNFYNHLLTKDNP 128 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 PSSA + + ++ K+A + + + P + + I W+K+ + F + Sbjct: 129 LKPSSAKKVIEALSNCLKYAKKLKLITYLPTDIEK-VNIEKPKIEFWSKQQLDFFLN-EI 186 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247 + + +G+R + C + + + + L Sbjct: 187 KDTYLYFPVLICALTGVRVGELCGLKWCDVDFRRGYLNITRQVISDKSTNTLVCTENLKT 246 Query: 248 TP--------------------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--- 284 T + ++ + + N S+ F K K Sbjct: 247 TKSDRTISIPKILLKEFEKNLKDPNDFIVLSRENKMCNPRNISMDFTKKVNKYKDRLPQI 306 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330 S HG+R AT+ G + G + TYT + ++ Sbjct: 307 SIHGLRHTHATLLILNGENIKIVSDRLGHNDITTTLNTYTHIMEEMK 353 >gi|148260468|ref|YP_001234595.1| phage integrase family protein [Acidiphilium cryptum JF-5] gi|146402149|gb|ABQ30676.1| phage integrase family protein [Acidiphilium cryptum JF-5] Length = 304 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 43/299 (14%), Positives = 88/299 (29%), Gaps = 30/299 (10%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRK 127 L+ I + +S A N+ +++++ + + + Sbjct: 3 LERHIEAFLESMVAERGAARNTILAYQADLADFAAFCASRGHGPAEADAASVADYLGGLA 62 Query: 128 HTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 SA + L+S+R ++ +R A +P PK + ++ ++ + Sbjct: 63 TAGLSARTQARRLSSLRQFQRFLLRDGQRADDPTALTSSPKLARTLPKTISEAEVDALLT 122 Query: 185 F-----WSEGSQPRLAFEFLLYSGLRCS-------DSCRAGVQHLQNNIFSIKTQKTGTI 232 G E L +G+R S ++ L + + Sbjct: 123 AAAAMPGQAGRVAEAGLEILYATGMRISELLVLPANALSTDASALLIKGKGGRERIVPLS 182 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289 ++ + + F M F+ K A AG++ S H + Sbjct: 183 AAARDAAARLREMNRKRPSRHLFPGRRMGFPMTRQAFARQLKRVAVMAGIHPARLSPHSL 242 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 R AT GA L G + + YT + R+ +V+ P Sbjct: 243 RHAFATHLLARGADLRSLQTLLGHADISTTQIYTHVL---------AERLQKLVEEHHP 292 >gi|255764498|ref|YP_003065000.2| site-specific tyrosine recombinase XerD [Candidatus Liberibacter asiaticus str. psy62] gi|254547849|gb|ACT57060.2| site-specific tyrosine recombinase XerD [Candidatus Liberibacter asiaticus str. psy62] Length = 300 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 42/270 (15%), Positives = 88/270 (32%), Gaps = 30/270 (11%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTP---SSAIQFLTS 139 + ++N+ +++ ++ + +T H+ S + SS + ++ Sbjct: 6 RASSINTLSAYKRDLKEMQNFLNNKEISLSAASTNHLISYLNHLSQRKLVTSSQRRKISV 65 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-----------WSE 188 +R + + + NP ++E PK+ + K+ + + Sbjct: 66 IRQFYNFLCYEGLRKDNPSDTLELPKKNHILPKTLHKDTIANLLEQAKIEAENPAPGQWK 125 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAM 247 + L E L +G+R S+ L I K V L + L M Sbjct: 126 RVRIFLLIELLYATGMRVSELVTLSAHTLNLTERTMIIQGKGNKERLVILSPSALHALQM 185 Query: 248 TPIGKETFFINNDK----------QKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSA 294 + + + ++ F+ KA A +AG+ K S H +R A Sbjct: 186 YKKTCSSMKMTGNDLWLFPSSTKTGHLSRQVFARDLKALAARAGIQKKNISPHIIRHAFA 245 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324 + + GA + G + + YT Sbjct: 246 SHLLEGGADLRTIQILLGHTDISTTQIYTH 275 >gi|218885463|ref|YP_002434784.1| tyrosine recombinase XerD [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756417|gb|ACL07316.1| tyrosine recombinase XerD [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 290 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 56/267 (20%), Positives = 86/267 (32%), Gaps = 21/267 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTS 139 LA N+ ++ + G D T + + + + + + L++ Sbjct: 12 RGLAENTLAAYAADLADFAGFLAQGGIDLEAATEQTLFLYIVDLRRRGLTSRTLSRHLSA 71 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLA 195 +R LF V Q +A +P +E PK T+++M + G + R Sbjct: 72 LRGLFAHGVAQGQLAADPLRYLENPKLPRTLPDVLTRDEMAAVLARPDLSDRLGFRDRTM 131 Query: 196 FEFLLYSGLRCSDSCRAGV-QHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254 E L SGLR S+ C K V + D KLL+ Sbjct: 132 LELLYASGLRVSELCGLRPLDFDPMTGLVRVFGKGSKERIVPVHDTAAKLLSAYIRDWRP 191 Query: 255 FFINNDKQKM--------NATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304 F + K +AG+ K S H R AT D GA Sbjct: 192 AFRPVEDALFLNRSGKGLTRQAVWKVVKRHVAEAGIRKDISPHTFRHSFATHLLDGGADL 251 Query: 305 HELMATYGWKTVDQAETYTKG-ADRIR 330 + G + E YT ADR+R Sbjct: 252 RTVQMLLGHADIAATEIYTHVQADRLR 278 >gi|228920886|ref|ZP_04084225.1| Prophage LambdaBa04, site-specific recombinase, phage integrase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228838817|gb|EEM84119.1| Prophage LambdaBa04, site-specific recombinase, phage integrase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 378 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 56/378 (14%), Positives = 110/378 (29%), Gaps = 52/378 (13%) Query: 15 RTRHGKIIYYFRKG----HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 R R + G G+R + T A +A T T E K T Sbjct: 6 RKRGNAWSFTIDIGIDPTTGKRQQKSKSGFRTKKEAQNAAATMITEI-EKGIYFDDKQLT 64 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVESR 126 + + + K L S+E I+ + I I+S Sbjct: 65 VLDVWEK-LKPLRKAELK---ITSYEKDMSLVRLYILPPFSYKKIKSIKPVMIQSYYAEL 120 Query: 127 KHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 K + +R +FK AV E + N V++P+ + ++ W+ E+ +F Sbjct: 121 KGKGLSNGTISNIHRCLRCIFKHAVEWEIIHDNIMNKVKKPREEQGEMKTWSSEECNRFL 180 Query: 184 SFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--------------------- 221 + E + + F +Y+G+R + + + + Sbjct: 181 QYLKEKNIKYHMFFLLAIYTGMRRGELLALTWKDIDFDNKRILVNKSLVKTEKGLFKAAT 240 Query: 222 ----------FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271 S + F + F N ++ Sbjct: 241 KTKSSNRSISISSFVIEKLQSYYSYKKKEFFRWGIHLNEEAFIFTGNTIHSPLHIDAPHR 300 Query: 272 WFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRI 329 + KA V + H +R AT+ AG + G ++ + Y+ Sbjct: 301 FLNDHYKKADVPRIRIHDLRHTHATLMLQAGEHPKIVQDRLGHSSIQMTLDKYSHITQN- 359 Query: 330 RLGIKNSRRISSVVDSDD 347 + + + S++ S++ Sbjct: 360 -MQQQAAENFESIIKSNE 376 >gi|257413888|ref|ZP_04744580.2| putative tyrosine recombinase XerD [Roseburia intestinalis L1-82] gi|257201913|gb|EEV00198.1| putative tyrosine recombinase XerD [Roseburia intestinalis L1-82] Length = 334 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 42/286 (14%), Positives = 91/286 (31%), Gaps = 28/286 (9%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129 LK I++Y + L + ++++ +Q I G+ + K + R + Sbjct: 25 LKEEINKYLNYCKFQKELKDKTIKAYKADLEQFITVIGENNPDK-EVLNAYLVYLHRMYK 83 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG---------------IRPW 174 + + + S++ LF + +E + INP V+ R+ Sbjct: 84 QKTVKRKIASVKALFHYLEEEELIEINPFHKVKTKFREEVILPKIIPRDIIEQLLNHLYK 143 Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTII 233 + + + + E L +GLR S+ C +++ K G Sbjct: 144 ERSIKEYSEWRKKIILRDIAVVETLFSTGLRISELCHLQNKYVDLKNGVLCIQGKGGKER 203 Query: 234 TVELPD--------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA--TKAGVN 283 +++ + + K + FF+N ++ A +A +N Sbjct: 204 YLQIGNNDVLSILNAYKKSFEDEIKKQGYFFVNRYGNALSEQSARSMIHKYAGEIQADIN 263 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + H R AT + + G ++ + YT Sbjct: 264 ITPHMFRHSFATYLMEEDVNIRYIQKMLGHASITTTQIYTYVTTEK 309 >gi|254510200|ref|ZP_05122267.1| phage integrase [Rhodobacteraceae bacterium KLH11] gi|221533911|gb|EEE36899.1| phage integrase [Rhodobacteraceae bacterium KLH11] Length = 295 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 46/267 (17%), Positives = 82/267 (30%), Gaps = 17/267 (6%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130 L + L S+ S G +TT+ +R TP Sbjct: 9 LRERMIEDMRIRGLGDKSQQSHIRAVKDFAAFLGRSP-DTVTTEELRVYQLHMTDAGVTP 67 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-SFWSEG 189 S +T++R F +E + + + + + E++ + G Sbjct: 68 SVYNARITALRFFFSMTCGREEMKRYM----QFRTQPRKLPAVLSAEEVSELLAVAPGPG 123 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAM 247 + R A +GLR S+ C + ++ + K V L + LL Sbjct: 124 LKYRAALSISYGAGLRASEVCNLTTGDIDSDRMLIHVVQGKGRKDRKVMLSPDLLDLLRD 183 Query: 248 TPIGKETFFI----NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301 ++ Q + F + AG+NK + H +R AT +AG Sbjct: 184 YWCEARPEGWLFPGKPKINPISPRQLNRAFTSAKRMAGINKPATLHTLRHSFATHLLEAG 243 Query: 302 ATAHELMATYGWKTVDQAETYTKGADR 328 + G + YTK A + Sbjct: 244 TDVRVIQVLLGHAKLTITAQYTKVATK 270 >gi|20807810|ref|NP_622981.1| site-specific tyrosine recombinase XerC [Thermoanaerobacter tengcongensis MB4] gi|34222923|sp|Q8RA66|XERC_THETN RecName: Full=Tyrosine recombinase xerC gi|20516368|gb|AAM24585.1| Integrase [Thermoanaerobacter tengcongensis MB4] Length = 353 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 45/305 (14%), Positives = 100/305 (32%), Gaps = 45/305 (14%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG--------DFDYRKIT------- 115 L+ ++ Y + + N+ ++ R D + +I Sbjct: 46 LEEFLN-YFSTVKAR--SPNTIKAYAYDLILFFRFLKKRRGKVSDDIPFDEIDISDVDID 102 Query: 116 ----------TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERP 164 ++ R +TP + + + S+R + + R+ + ++ NP +E P Sbjct: 103 LIESVDLNDLYAYLSFVTNERSNTPPARARKVASLRSFYNYLYRKAKVISKNPTQELESP 162 Query: 165 KRKTEGIRPWTKEDMQQFKSFW--SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222 K T E+ ++ + + L GLR S+ + ++ + Sbjct: 163 KLSVRHPIYLTLEESKKLLNSIDGPFKERDYAIITLFLNCGLRVSELVNINLDDIKEDKL 222 Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFK 274 + K T+ L + +K ++ + + + K ++++ K Sbjct: 223 T-VIGKGNKQRTIYLNEACIKAISDYLKVRPKEGVKDKKALFLSKRLKRISVKTVQYLVK 281 Query: 275 AKATKAGV---NKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD-RI 329 A + SAH +R +AT+ G L G V + YT D ++ Sbjct: 282 KHLKHANLEGKKYSAHKLRHTAATLMYRYGNVDIRTLQKLLGHSNVSTTQIYTHVDDSQL 341 Query: 330 RLGIK 334 R + Sbjct: 342 REAVN 346 >gi|325285449|ref|YP_004261239.1| Tyrosine recombinase xerC [Cellulophaga lytica DSM 7489] gi|324320903|gb|ADY28368.1| Tyrosine recombinase xerC [Cellulophaga lytica DSM 7489] Length = 296 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 34/280 (12%), Positives = 91/280 (32%), Gaps = 26/280 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVE---SRKHTPSSAIQFL 137 + ++ +++ + G + +R+ + S++ + S + + Sbjct: 14 KKYSTHTVTAYKKDISEFTEFCGVNYQLTSIDDVPYAFVRNWIVVLVSKEISNRSINRKI 73 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED-----MQQFKSFWSEGSQP 192 S++ +K+ + V +NP + K + P++ E+ + EG + Sbjct: 74 ASLKAYYKFLQKIGRVVVNPLAKHKALKISKKIEIPFSFEEVEAALNEVDFEAGFEGERD 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-----KTQKTGTIITVELPDGFMKLLAM 247 RL L +G+R + ++++ +I + ++ + + L Sbjct: 134 RLIIGLLYATGVRRIELVNLKLKNVDVKAKTIKVLGKRNKERVVPLAPFVCPWVYSYLEN 193 Query: 248 TPIGKETFFINNDKQKMNATQFS-----IWFKAKATK--AGVNKSAHGVRKFSATISADA 300 + + +K + S H +R AT + Sbjct: 194 REALPVINDEAYFFLLKSGDKVYESLVYRIINRYFSKVSSKQKNSPHILRHTFATHLLNE 253 Query: 301 GATAHELMATYGWKTVDQAETYTK--GADRIRLGIKNSRR 338 GA + + G ++ + YT A+ ++ + R Sbjct: 254 GADLNSVKELLGHSSLASTQVYTHNSIAELKKVHLAAHPR 293 >gi|170741374|ref|YP_001770029.1| integrase family protein [Methylobacterium sp. 4-46] gi|259710434|sp|B0UNY7|XERC_METS4 RecName: Full=Tyrosine recombinase xerC gi|168195648|gb|ACA17595.1| integrase family protein [Methylobacterium sp. 4-46] Length = 320 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 38/300 (12%), Positives = 86/300 (28%), Gaps = 34/300 (11%) Query: 71 LKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRK---SGDFD----YRKITTKHIRSG 122 ++ ++ + A + N+ ++ Q + +G + + +R+ Sbjct: 16 VREAVASWLTLLARERRFSPNTVEAYARDLRQFLAHRARAGTQPDIPSLVALKPRDLRAF 75 Query: 123 VESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + +R+ S ++ L S+R + R+ + ++ +V PK + RP Sbjct: 76 MAARRAEGIGGRSLMRALASLRSFARHLEREGHGTVSALSAVRSPKVERRLPRPLPVAAA 135 Query: 180 QQFKSFWSEGSQPR-----------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228 S + R LA + + + R + K Sbjct: 136 VALASPDIRAGEDRPDWVLARDAAVLALLYGAGLRIGEALGLRRKDAPVGGLDTLTIVGK 195 Query: 229 TGTIITVELPDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKAG 281 V + LA F+ ++ + + G Sbjct: 196 GQKTRMVPVIAPVQAALAEYLAACPYALAPDGPLFVGQKGGPLSPRVVQLAVASLRGALG 255 Query: 282 VN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL--GIKNSR 337 + + H +R AT + G ++ + YTK D RL + + Sbjct: 256 LPDSATPHALRHSFATHLLARQGDLRAIQDLLGHASLATTQIYTK-VDSARLMSAFEAAH 314 >gi|86751622|ref|YP_488118.1| Phage integrase [Rhodopseudomonas palustris HaA2] gi|86574650|gb|ABD09207.1| tyrosine recombinase XerD subunit [Rhodopseudomonas palustris HaA2] Length = 310 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 44/294 (14%), Positives = 99/294 (33%), Gaps = 33/294 (11%) Query: 69 TTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRK--------ITTKHI 119 TL I + L+ ++ ++ G + I T H+ Sbjct: 1 MTLSKPIVSFLDHCSVERQLSDHTLQAYGYDLADFAAWVGTRRRKDKAFSAGAPIETDHL 60 Query: 120 RS---GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 R+ + RK + ++ + L +R F++ + + + ++ R ++ Sbjct: 61 RAYLEHMTERKLSAATVRRRLACLRSFFRYLEDRGTMPNPFDGWRLKLPKRKRLPRTLSR 120 Query: 177 EDMQQFKSFWSEGSQPRLA----------FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226 ++ Q R A ++ +G+R + C+ + ++ +I+ Sbjct: 121 DETTQLLKSARAPGAARHAAPESPSLCTEIRLMIATGIRIGELCKIASTDVSSDGAAIRI 180 Query: 227 QKTGTIITVELPDGF---------MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277 G+ + L T G F+N + K+ F + A Sbjct: 181 HGKGSRDRMVYVTDNGLRAELRKLAVLRQRTLGGDGPLFLNRNGDKLRPHSFRAKLRNFA 240 Query: 278 TKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +AGV + + H +R +AT+ ++G + G ++ E YT +D Sbjct: 241 GQAGVRRRVTPHMLRHTAATLLIESGVDIRIVQRLLGHSSIATTEIYTHVSDEA 294 >gi|158317270|ref|YP_001509778.1| integrase family protein [Frankia sp. EAN1pec] gi|158112675|gb|ABW14872.1| integrase family protein [Frankia sp. EAN1pec] Length = 477 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 52/350 (14%), Positives = 95/350 (27%), Gaps = 40/350 (11%) Query: 27 KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS 86 G+R R ++ LT E + + T+ + E+ Sbjct: 110 WVDGKRSRKTVYGKTE--KECREKLTKVQRAAELGVNVTAERRTVAVWLGEWLDIKEGDG 167 Query: 87 LAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRV 142 ++ ++ + I+ G K+T +R V S K + S + +R Sbjct: 168 TRASTLRAYRWLINMHIVPVIGRVQLDKLTPLDVRRLVASAKKSGLSAGSVRHVHSLIRN 227 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202 A R + VA N +V+ P +R + + + G + F L Sbjct: 228 ALAEAERLDLVARNVAKAVKAPPTPHREVRAL-RPEEARRLVEVLRGERLEAVFACGLML 286 Query: 203 GLRCSDSCRAGVQHL------------------------------QNNIFSIKTQKTGTI 232 GLR + + + T Sbjct: 287 GLRRGEILGLRWSDVDLDGATLHVRQTLQRVDGSLMFVPAKTERSHRRLPIPPKLVTILR 346 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRK 291 L F ++ + + F +AG+ H +R Sbjct: 347 RHRATQTAERTGLGDAWTETGLVFTSSIGTPLEPRNVNRRFDVLRRQAGLPWLRLHDLRH 406 Query: 292 FSATISADAGATAHELMATYGWKTVDQAE-TYTKGA-DRIRLGIKNSRRI 339 A++ G A +M G T+ TYT + R + RI Sbjct: 407 AFASMLFAEGVPARTVMELLGHSTIQLTMNTYTHVMPETQRDAVGRLDRI 456 >gi|108804749|ref|YP_644686.1| phage integrase [Rubrobacter xylanophilus DSM 9941] gi|108765992|gb|ABG04874.1| phage integrase [Rubrobacter xylanophilus DSM 9941] Length = 379 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 49/354 (13%), Positives = 103/354 (29%), Gaps = 49/354 (13%) Query: 15 RTRHGKI---IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 R ++G + +R + + AL+ RE + Sbjct: 13 RRKNGGWMGQYVVYTAEGRKRKTVYGKTRAEVAKKLNKALS----DREDGLFFDAGNLKV 68 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR---K 127 + + + + G++ + +++ I G+ + +T H++ + Sbjct: 69 GEYMDRWLRDSVEGNVGPRTLANYKLQVRRHIKPVLGEIQLKTLTPAHVQGLYRQKLDAG 128 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 PSS + A+R V N +V+ PK +E + T E+ ++F + Sbjct: 129 LAPSSVRYIHAVLHRALTQALRWGLVPRNVSEAVDLPKLVSEEVDALTPEEARKFLDA-A 187 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--------------------SIKTQ 227 G + + + +G+R + + Sbjct: 188 RGDRFEALYVVAVMTGMRRGELLGLRWSDIDLGQNAPATLRVGRQLQRMRDGSGLKFVAP 247 Query: 228 KTGTIITVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQF-SIW 272 K G T+ LP ++ L + F + + + Sbjct: 248 KGGKGRTIRLPSRAVEALKAHRARQAEERLKAGPLYRDEGLVFASEVGTPLEPSNIDRRS 307 Query: 273 FKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK 324 FK KAG+ H +R AT+ G + G + TY+ Sbjct: 308 FKPLLKKAGLPDIRFHDLRHTCATVLLSQGVNPKFVQELLGHADIKLTLGTYSH 361 >gi|327399621|ref|YP_004340490.1| Tyrosine recombinase xerC [Hippea maritima DSM 10411] gi|327182250|gb|AEA34431.1| Tyrosine recombinase xerC [Hippea maritima DSM 10411] Length = 276 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 45/279 (16%), Positives = 99/279 (35%), Gaps = 21/279 (7%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134 EY S + + N+ ++ + + ++ + FD + ++ R + S+ Sbjct: 8 FEEYLNSKYS---SKNTIKAYLTDTQEFLKNTKGFDRDDVEVFLVKLF--DRGLSSSTIT 62 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194 + L S+ + F++ + V INP +++PK+K + + D + + R Sbjct: 63 RKLASLSIFFEFLKLKGKVRINPLRVIDKPKQKKMLPKFL-EVDDVVALLEGIKDKRDRA 121 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254 FE + S LR S++ + + I+ ++ G + L + K+ Sbjct: 122 LFELIYSSSLRASEALGLDINDIDFENLRIRIRRKGGKVVYVPISQ-RAALFLKDYLKDR 180 Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAHGVRKFSATISADAGATAHELMA 309 + + + K + + S H +R AT ++G L Sbjct: 181 KEGPLFLNRYGKRLSDRYLRRLIKKYALSSIFKDVSPHTLRHSKATHLLNSGMDIRLLQR 240 Query: 310 TYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 G ++ + YT N + ++ DS P Sbjct: 241 LLGHSSIKATQIYTHL---------NLKELAQTYDSTHP 270 >gi|313836787|gb|EFS74501.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL037PA2] gi|314929805|gb|EFS93636.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL044PA1] gi|314972234|gb|EFT16331.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL037PA3] Length = 315 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 40/291 (13%), Positives = 94/291 (32%), Gaps = 28/291 (9%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGVESRK---H 128 + ++ + N+ + + + GD KI T +R+ + + Sbjct: 22 VEDFCDHLSALRRSPNTIRGYRADLIDFMGHAHSHGDDALGKIGTSQVRAWLADTRLAGA 81 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---- 184 +P++ + ++ RV F+WA + + +P ++ + + Sbjct: 82 SPATMQRRWSAARVFFRWAANEGLIDCDPTAALTSANVPKRLPATLGVDQARHILDGAVA 141 Query: 185 -----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELP 238 +G++ E L GLR + C + + I T K TV + Sbjct: 142 QARSDETPQGARDAAILEVLYGGGLRVGELCGLDLGDVDRSRQTVIVTGKGDKERTVPMG 201 Query: 239 DGFMKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWFKAKATK--AGVNKSAH 287 + + + + + Q +++ A + H Sbjct: 202 TPALHAIDTWLPRRAEWAGPDSGQALFLGARGGRIDQRVVRRVVHAHMRSEPDSPDLGPH 261 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337 G+R AT + GA + G +++ + YT + +R+R + + Sbjct: 262 GLRHAMATHLLEGGADLRTVQDILGHESLATTQIYTHVSTERLRTAFRQAH 312 >gi|225023845|ref|ZP_03713037.1| hypothetical protein EIKCOROL_00711 [Eikenella corrodens ATCC 23834] gi|224943319|gb|EEG24528.1| hypothetical protein EIKCOROL_00711 [Eikenella corrodens ATCC 23834] Length = 307 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 43/261 (16%), Positives = 86/261 (32%), Gaps = 11/261 (4%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134 I + S + + ++ ++ + + + + P S Sbjct: 9 IEAWLHSLQQQNHSPHTLAAYRRDLTWLADFQPQSKLARPLFTAALRQLGQQNQHPRSIA 68 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG---SQ 191 + L++ R +W V+ Y+ +P ++ PK + E + Q E S+ Sbjct: 69 RRLSAWRQFCRWLVQTGYLKADPTHGLKAPKAPERLPKAVPAEPLNQLLDQAPENPLDSR 128 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250 FE L SGLR +++C + L + + T K + L ++ LA Sbjct: 129 DLAIFELLYGSGLRLAEACALDLDDLNLQSGWIAVTGKGRKQRHLPLTAQSIRALAGYLK 188 Query: 251 GKETFFIN------NDKQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSATISADAGAT 303 + +++ A Q + AT G + S H +R A+ Sbjct: 189 TRTAAPDETALFTGRTGRRLGARQIQKRLQQFATHHGSRHLSPHMLRHSYASHLLQNARD 248 Query: 304 AHELMATYGWKTVDQAETYTK 324 + G + + YTK Sbjct: 249 IRAVQELLGHSQLATTQHYTK 269 >gi|319407796|emb|CBI81447.1| integrase/recombinase XerC [Bartonella sp. 1-1C] Length = 321 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 37/277 (13%), Positives = 84/277 (30%), Gaps = 30/277 (10%) Query: 78 YRKSA-HWGSLAVNSRISFESYFDQI----IRKSGDFD----YRKITTKHIRSGVESRK- 127 + +A+++ +++E Q + G + +R+ + R+ Sbjct: 28 WLDHLIQTRRMALHTAVAYERDTRQFLFFLCQHLGYQPALNDLADLHVADLRAYLAYRRT 87 Query: 128 --HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK-------ED 178 + S + + S+R F + R++ V + V PK + +P T ++ Sbjct: 88 QNISARSLSRNMASLRSFFNYLSREKLVNVPAAKLVRTPKHRKSLPKPLTIESALRIVKE 147 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVE 236 Q ++ ++ L G+R S++ + + T K G + Sbjct: 148 ENQQETEPWIIARNTAILILLYGCGMRISEALALTPEQFADPSIKSLSVTGKGGKTRLIP 207 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQ-------KMNATQFSIWFKAKATKAGVNKS--AH 287 L K + +N + + G+ ++ H Sbjct: 208 LIPIVHKAIENYLKCCPYPLVNTQPIFLGVRGKPLQPAIIQRAVQNLRAHLGLPETTTPH 267 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT G + G + + YT Sbjct: 268 ALRHSFATHLLSRGGDLRTIQELLGHACLSTTQVYTH 304 >gi|149376980|ref|ZP_01894734.1| tyrosine recombinase XerC [Marinobacter algicola DG893] gi|149358757|gb|EDM47227.1| tyrosine recombinase XerC [Marinobacter algicola DG893] Length = 317 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 37/284 (13%), Positives = 89/284 (31%), Gaps = 22/284 (7%) Query: 70 TLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD---YRKITTKHIRSGVES 125 TL ++ + + + + S+ + +R +T+ +R V Sbjct: 13 TLAEPVAAFLRYLASEKRHSPRTCDSYRDDLKRFAVWVEHQPSPAWRSVTSHDLRRYVAQ 72 Query: 126 RKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 S + L+++R +++ +R+ NP L + PK R + + Sbjct: 73 LSREGLGGRSIARHLSAIRRFYEYLLREHLAVDNPALDIRAPKSGKRLPRVADVDQLNHL 132 Query: 183 KSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP 238 + + FE + SGLR S+ +Q + ++ K + + Sbjct: 133 LDAAPDDPLEIRDLSMFELMYSSGLRLSELAGLDLQSVDVRGGEVRVLGKGRKERLLPVG 192 Query: 239 DGFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHG 288 ++ LA + +++ +++ G ++ H Sbjct: 193 RRALEALAQWLEVRGAMAPDGENALYVSRRGDRLSTRSIQSRLSRWGMSKGADQRLHPHL 252 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 +R A+ ++ + G + + YT D L Sbjct: 253 LRHSFASHMLESSGDLRAVQELLGHADIATTQVYTH-LDFQHLA 295 >gi|293418008|ref|ZP_06660630.1| hypothetical protein ECDG_02928 [Escherichia coli B185] gi|291430726|gb|EFF03724.1| hypothetical protein ECDG_02928 [Escherichia coli B185] Length = 334 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 43/314 (13%), Positives = 90/314 (28%), Gaps = 10/314 (3%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 + G+ + R + R+ + I + ++ + TL Sbjct: 4 RKMHDGRWLLDIRPCGRKGKRIRRIFDKKSIATATERYIIANAEKREFIQGYRDRRTLSD 63 Query: 74 LISEYRKSAHWGSLAVNS-RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132 L+ + N+ + +++ + K+ RS + PSS Sbjct: 64 LLELWWVYHGQHRRKANTDKQQLGKIINELGADMFAVELDKLKIIAWRSQKIAEGLKPSS 123 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 A +++ + +F A+++ + P + + Sbjct: 124 ANRYMNRLSGMFT-ALKKIGLWDAEHPVRGIPVLYVKQREMAFLSKNEVTLLLDGLNGDQ 182 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252 R L +G R S++ R + + +N + K G TV + + G+ Sbjct: 183 RRVALLCLCTGARWSEASRLHGEQIVHNRITFLETKNGRKRTVPVSQEICDAVKTKETGR 242 Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYG 312 +F K ++AH +R A+ G L G Sbjct: 243 LFDVK--------YREFCRALKKIKPDLPRGQAAHVLRHTFASHFVMNGGNILALQKILG 294 Query: 313 WKTVDQAETYTKGA 326 T+ Q Y A Sbjct: 295 HATIQQTMAYAHFA 308 >gi|260909719|ref|ZP_05916413.1| integrase/recombinase XerD [Prevotella sp. oral taxon 472 str. F0295] gi|260636144|gb|EEX54140.1| integrase/recombinase XerD [Prevotella sp. oral taxon 472 str. F0295] Length = 293 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 37/287 (12%), Positives = 92/287 (32%), Gaps = 25/287 (8%) Query: 76 SEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESR---K 127 ++ + + + + S+ + D + I IR +ES Sbjct: 4 EQFLNYLQYELNRSELTIASYGDDLRAFEAFFKNKDTQLSWEAIDADIIRDWMESMMDKG 63 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + ++ + L+++R +++ + + YV NP + PKR + + ++ + Sbjct: 64 CSATTIQRRLSALRSFYRFGLTRGYVTKNPARGIVGPKRSRPLPQFLREAEIDRLLDDVP 123 Query: 188 EGSQPR-----LAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGF 241 G R +G+R ++ + K + D Sbjct: 124 AGDSYRELLAYTIVLTFYSTGMRLAELVGLDDDSIDFETRVIKVLGKGSKQRLIPFADEL 183 Query: 242 MKLLAMTPIGKET--------FFINNDKQKMNATQFSIWFKA--KATKAGVNKSAHGVRK 291 + L ++ FF++ +++ +A + +S H +R Sbjct: 184 EEGLKTYITRRDAEVTRKSKAFFVDRHGERVKRGAVQNSVRASLAKVTSMKKRSPHVLRH 243 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337 AT + A + G +++ E YT +++R + Sbjct: 244 SFATAMLNNEAGLESVKKLLGHESLSTTEIYTHTTFEQLRRIYDKAH 290 >gi|296241818|ref|YP_003649305.1| integrase family protein [Thermosphaera aggregans DSM 11486] gi|296094402|gb|ADG90353.1| integrase family protein [Thermosphaera aggregans DSM 11486] Length = 339 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 34/261 (13%), Positives = 77/261 (29%), Gaps = 10/261 (3%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132 ++ E+ + ++ +++S + GD +++T + + + R + Sbjct: 21 EILQEFIMLLESTGASKDTVKAYQSAISDFLDFIGDKPLKEVTLRDVLAWRNERLKSGFP 80 Query: 133 AIQFL--TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT--KEDMQQFKSFWSE 188 + L + + + R + T ++ + Sbjct: 81 RKKTLDKSRWQATLHYYTLFLKRFFEWLGLQLRVPSVKKPSSRITVLTDEEVGKLFQAAR 140 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--TGTIITVELPDGFMKLLA 246 +L LL +GLR + V + + +I+ + G V + KL+ Sbjct: 141 NPLDKLILRLLLDTGLRSKEVLNIKVGDIDFDGRTIRVVEGKYGKERYVTASNETFKLIE 200 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGAT 303 + + K A KAG+ H +R AT + G + Sbjct: 201 AWVKLNNLGRDDRLVD-LTYGGLYKKLKRLAAKAGIPPEKIRPHVLRHTFATRALRLGIS 259 Query: 304 AHELMATYGWKTVDQAETYTK 324 L G + + Y Sbjct: 260 LPSLQRLLGHTDIRTTQVYLH 280 >gi|240170150|ref|ZP_04748809.1| site-specific tyrosine recombinase XerD [Mycobacterium kansasii ATCC 12478] Length = 313 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 45/293 (15%), Positives = 89/293 (30%), Gaps = 36/293 (12%) Query: 67 KPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSG 122 TL + Y +A N+ S+ + + D D + + Sbjct: 2 TTLTLDTQLQGYLDHLAIERGVAANTLSSYRRDLRRYTKHLEDRGITDLAAVGEDDVSDF 61 Query: 123 VESRKHT----------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 + + + SA + L ++R L ++A + ++ +V P + Sbjct: 62 LVALRRGDPDSGATALAAVSAARALIAVRGLHRFAAAEGLAELDVARAVRPPTPGRRLPK 121 Query: 173 PWTKEDMQQFKS--------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 T + + + R E L +G R S++ V + + S+ Sbjct: 122 SLTVDQVLALLEGAGGDNPADGPLTLRNRALLELLYSTGSRISEAVGLDVDDVDTHARSV 181 Query: 225 K-TQKTGTIITVELPDGFMKLLAMTPIGKETF-----------FINNDKQKMNATQFSIW 272 K G V + + L + F+N +++ Sbjct: 182 LLRGKGGKQRLVPVGRPAVHALDAYLVRGRPDLARRGRGTAAIFLNARGGRLSRQSAWQV 241 Query: 273 FKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + A AG+ S H +R AT + GA + G +V + YT Sbjct: 242 LQDAAECAGITAGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYT 294 >gi|239826606|ref|YP_002949230.1| site-specific tyrosine recombinase XerC [Geobacillus sp. WCH70] gi|239806899|gb|ACS23964.1| tyrosine recombinase XerC [Geobacillus sp. WCH70] Length = 300 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 47/283 (16%), Positives = 96/283 (33%), Gaps = 28/283 (9%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR---K 127 L EY + + + + + ++ +Q G ++T +R + K Sbjct: 10 LFIEYLQ--VEKNYSQYTIVCYQRDVEQFFEFMNEQGIHHLHEVTYNDVRLYLTKLYEQK 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFK 183 + S + ++S+R +K+ +R++ V NP PK++ + +++ Sbjct: 68 QSSRSISRKISSLRSFYKFLLREKKVKENPFALAALPKKEQKIPNFLYEQELEKLFYVND 127 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFM 242 + G + + E L +G+R S+ C + + ++ +I K V Sbjct: 128 VNTAIGQRNQAILELLYATGVRVSECCHIQLSDIDFSVSTILIHGKGNKQRYVPFGRFAK 187 Query: 243 KLLAMTPIG------------KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHG 288 + L F+N + KA + N S H Sbjct: 188 EALERYIHHGRRELLQKAKSAHAYLFVNARGNPLTPRGVRYILDEIVKKAALTQNISPHV 247 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330 +R AT + GA + G + + YT DR+R Sbjct: 248 LRHTFATHLLNEGADMRTVQELLGHAHLSSTQVYTHVTKDRLR 290 >gi|212703032|ref|ZP_03311160.1| hypothetical protein DESPIG_01070 [Desulfovibrio piger ATCC 29098] gi|212673620|gb|EEB34103.1| hypothetical protein DESPIG_01070 [Desulfovibrio piger ATCC 29098] Length = 327 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 52/316 (16%), Positives = 102/316 (32%), Gaps = 39/316 (12%) Query: 53 GSTPKREYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF-- 109 G +++ + TTL+ I + L+ ++I++ + Q+ Sbjct: 2 GRHIEKDTMEEELDPRTTLE--IESFLAWLDVQRGLSPTTQIAYGTDLRQLALFLAQRGA 59 Query: 110 ---DYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163 +++ KHI++ + S+ + L + R F++ R N V Sbjct: 60 SLARPAEVSKKHIQAWLARLYALGEAKSTMARKLAAARTFFRYQQRMGRTENNVAAQVRN 119 Query: 164 PKRKTEGIRPWTKEDMQQFKSFWS-----------------EGSQPRLAFEFLLYSGLRC 206 PK++ R + ++ E L SGLR Sbjct: 120 PKQEQRHPRVLNVDQAFAVLDTPDALAGTGSPRIPPATGDALAARDHALAELLYGSGLRI 179 Query: 207 SDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLLAMTPIGK--------ETFFI 257 S++ V L+ + ++ G L D + L + + F+ Sbjct: 180 SEALGLDVTDLRLDESVVRVFGKGARERMSPLSDTSVTALRAWLEQRGTLAPEGEKALFV 239 Query: 258 NNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTV 316 +++ + + AGV S H +R AT DAGA + G + + Sbjct: 240 GARGGRLDRREAMRRIERLCRNAGVEPVSPHALRHSFATHLLDAGADLRSVQELLGHQRL 299 Query: 317 DQAETYTKGADRIRLG 332 + YT+ RL Sbjct: 300 TTTQRYTR-VSLERLM 314 >gi|91792496|ref|YP_562147.1| phage integrase [Shewanella denitrificans OS217] gi|91714498|gb|ABE54424.1| phage integrase [Shewanella denitrificans OS217] Length = 296 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 35/263 (13%), Positives = 82/263 (31%), Gaps = 18/263 (6%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPS 131 L ++ + + ++ +I D K+TT ++ H+ S Sbjct: 12 LYQQHLTNLTLQGKRPATIDAYSRAVRRIAAYF-DCCPDKLTTADLKRYFADLIASHSWS 70 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 + ++ ++ + Q + ++ P + T ++ S + + Sbjct: 71 TVKLDRNGLQFFYRHVLNQAWQWLSIVK----PPQVNHLPDILTPAEVSMVISLTHK-LR 125 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249 ++ F L GLR ++ + + Q I+ K G + LP ++ L Sbjct: 126 YQVCFLTLYSMGLRLGEAVSLQIGDIDSQLMQVHIRDAKGGKDRLIPLPQRTLQALRYYW 185 Query: 250 IGKETFFINNDKQKMNATQ------FSIWFKAKATKAGVNKS--AHGVRKFSATISADAG 301 + K ++ ++KS H +R AT + G Sbjct: 186 QTHRHPRYLFPGKDGKPNSLMDRGGIQKAMKKVISECHIHKSISPHNLRHSYATHLLEQG 245 Query: 302 ATAHELMATYGWKTVDQAETYTK 324 + G +++ YT+ Sbjct: 246 LDLRSVQQLLGHNSLNTTARYTR 268 >gi|325922226|ref|ZP_08184012.1| tyrosine recombinase XerC subunit [Xanthomonas gardneri ATCC 19865] gi|325547296|gb|EGD18364.1| tyrosine recombinase XerC subunit [Xanthomonas gardneri ATCC 19865] Length = 305 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 39/286 (13%), Positives = 91/286 (31%), Gaps = 29/286 (10%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD-------------FDYRKITTKHIR 120 + ++ ++ ++ ++ ++ + + D ++T+ +R Sbjct: 4 VEDFLAYLQVERQVSAHTLDAYRRDLAALVSWAAEQKGEDGAPLDAALLDSAQLTSAQLR 63 Query: 121 SGVE---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 V R +P S + L++ R + W ++ +A +P ++ PK + + + Sbjct: 64 QFVAAEHRRGLSPKSLQRRLSACRSYYAWLLKHGRIAASPAAAMRAPKAPRKLPQVLDAD 123 Query: 178 DMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTII 233 + + G + R E SGLR S+ C + L + K Sbjct: 124 EAVRLVEVPTDAPLGLRDRALLELFYSSGLRLSELCALRWRDLDLESGLVMVLGKGEKQR 183 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQ-----KMNATQFSIWFKAKATKAGV--NKSA 286 V + + L + ++ I K A + G+ + Sbjct: 184 LVPVGPHAITALREWLRDSGGRAETHVFPGRAGGAISQRAVQIRIKQLAVRQGMFKDVHP 243 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R A+ ++ + G + + YT D L Sbjct: 244 HMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTH-LDFQHLA 288 >gi|229150814|ref|ZP_04279026.1| DNA integration/recombination/invertion protein [Bacillus cereus m1550] gi|228632603|gb|EEK89220.1| DNA integration/recombination/invertion protein [Bacillus cereus m1550] Length = 369 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 49/366 (13%), Positives = 118/366 (32%), Gaps = 44/366 (12%) Query: 17 RHGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + G G+R + + T A + + + TL Sbjct: 7 KRGNKYCIVIDIGPDPETGKRRQKWFSGYKTKKEA-QADVAKKITELNEGTFIEPSKVTL 65 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 K ++ + + S+ ++ + ++ + +I G K+ HI+ ++ Sbjct: 66 KGYLNHWLE-IKSMSIEKSTFAGYRAFINQHVIPSIGMVALHKLNVMHIQKCYKNAIDKG 124 Query: 131 SSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S+ L ++ AV+Q ++ NP E PK++ I+ WT+E++++F + Sbjct: 125 ISSNSILLMHRILKSALNLAVKQNIMSRNPADFAEIPKKEKTPIQTWTEEEVKKFLAHSQ 184 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--------------TGTII 233 E S+ + + + +G+R + Q + ++ + + Sbjct: 185 E-SRYHIGYLLAITTGMRLGEVLGLRWQDIDFEKHTVTINQTSGHDNKIKKTAKTNSSKR 243 Query: 234 TVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKAKATK 279 T+ +P+ + L + ++ N + + F F K Sbjct: 244 TIPVPNETIAALKKHKILINKEKLRFGSAYLDQDLINCNEFGRIIKRAHFRKSFIRMTHK 303 Query: 280 AGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSR 337 G+ H +R AT+ G + G + Y+ + + + Sbjct: 304 VGIKEIKFHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLSVYSHVLPN--MQEEAVK 361 Query: 338 RISSVV 343 + Sbjct: 362 NFGKSI 367 >gi|168187849|ref|ZP_02622484.1| phage integrase [Clostridium botulinum C str. Eklund] gi|169294306|gb|EDS76439.1| phage integrase [Clostridium botulinum C str. Eklund] Length = 397 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 50/390 (12%), Positives = 110/390 (28%), Gaps = 52/390 (13%) Query: 1 MTPSLRLPPFVTKE----RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTP 56 M+ + K + + + +++ + T + +T Sbjct: 1 MSKKANGEGSIQKYYQNGKDKGWRASITVGYDDKGKLKRKQFYGKTKSE-VLKKMTEYQH 59 Query: 57 KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII--RKSGDFDYRKI 114 K+ P TL+ + +L +S ++ + + I G+ ++ Sbjct: 60 KKNVGILPSDDKITLQQWFKTWLYEFRVNNLKPSSFERYDGIYRKYILNSPIGEIKLSEL 119 Query: 115 TTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 K I++ + + S + + A++Q Y+ N C V PK + Sbjct: 120 RAKDIQTYYNNLYDNGISSSVINTINGFLYTCLESALKQNYIYQNYCKLVTLPKIVKDDK 179 Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 Q +G + +AF L +GLR + + + ++ + Sbjct: 180 FTVFTLQDQNIFLNNIQGHKYEMAFILALGTGLRLGELLGLKWSDIDFDNNTLSVSRAIK 239 Query: 232 I-------------------------ITVELPDGFMKLLAMTPIGK-------------- 252 TV +P M+ L Sbjct: 240 RTTIINKQGDRKSQIIEQLPKTKTSIRTVPIPTNIMEKLKEYKQKHSVIKKENEDLYNNT 299 Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATY 311 + F + ++ + FK+ KAG+ + H +R AT + G + Sbjct: 300 DYIFCDKLGNPLDPKRIPRNFKSVLKKAGLKDIKFHSLRHTYATRLFEVGVPIKTVQTLM 359 Query: 312 GWKTVDQAE-TYTKGA-DRIRLGIKNSRRI 339 G + YT + + + Sbjct: 360 GHSDITTTMNIYTHVMPEEKNKAAEKINVL 389 >gi|217962623|ref|YP_002341195.1| site-specific recombinase, phage integrase family [Bacillus cereus AH187] gi|229142474|ref|ZP_04270973.1| Site-specific recombinase, phage integrase [Bacillus cereus BDRD-ST26] gi|217067985|gb|ACJ82235.1| site-specific recombinase, phage integrase family [Bacillus cereus AH187] gi|228640987|gb|EEK97319.1| Site-specific recombinase, phage integrase [Bacillus cereus BDRD-ST26] Length = 322 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 41/269 (15%), Positives = 83/269 (30%), Gaps = 22/269 (8%) Query: 83 HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTS 139 + + F +R+ IT H++ + + P++ +++ Sbjct: 38 RAEGFRKRTIDDYSKLFRYFMRELNIEKVEIITVAHVQMYINKLLNRELAPTTVNIRISA 97 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPRLA 195 ++ +FK Q Y+ NP + + + I +++ G + Sbjct: 98 LKSVFKRLHEQGYIKSNPAVDFVKLRTDEAPIFTLNNNQIKRLFRVVDKTTYAGYRDYCT 157 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPDGFMKLLAMTPIG 251 +L+ GLR ++ + V + + F+I K V + + L M Sbjct: 158 MLLMLHCGLRVNEVNQLEVNDIDFDNFTIMLAGAKNKNRKTRAVPMTKKVAEELRMLIDE 217 Query: 252 KETFFINNDKQKMNATQ-------FSIWFKAKATKAGVNK----SAHGVRKFSATISADA 300 +F + T AG+ K S H +R AT Sbjct: 218 SREYFGGITNVFLTQEGKVIDNDLLRKRMYRYGTLAGLLKECRPSPHSLRHTFATSFLRN 277 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329 G + + LM G + Y + D Sbjct: 278 GGSVNALMRIMGHADITTTMRYVRLNDEA 306 >gi|296269467|ref|YP_003652099.1| tyrosine recombinase XerD [Thermobispora bispora DSM 43833] gi|296092254|gb|ADG88206.1| tyrosine recombinase XerD [Thermobispora bispora DSM 43833] Length = 313 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 48/303 (15%), Positives = 104/303 (34%), Gaps = 37/303 (12%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRK 127 + ++S Y L+ N+ S+ + + G ++ + + + + + Sbjct: 6 EAVLSSYLNHLAVERGLSANTVASYRRDLRRYLDHLKARGLRTLAEVREDDVAAFLTALR 65 Query: 128 HT--------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 SSA + +++R L ++A+R+ +P ++ P++ + + E++ Sbjct: 66 EGDADHPALVASSAARAFSAVRGLHRFALREGLTRHDPAHAIRPPRQLRRLPKAISVEEV 125 Query: 180 QQFKSFWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234 ++ + + R E L +G R S++ V + + + + Sbjct: 126 ERLIAACGPDGSPLTLRNRALLELLYGTGARISEAVGLAVDDVTTGAPTDPARDQVRLRG 185 Query: 235 VELPDGFMKL------------------LAMTPIGKETFFINNDKQKMNATQFSIWFKAK 276 + L LA G F+N ++ +A Sbjct: 186 KGGRTRIVPLGRYARQALDAYLVRARPQLAAQGRGTSALFLNARGGRLTRQGAWEVLQAA 245 Query: 277 ATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT-KGADRIRLGIK 334 A +AG+ S H +R AT D GA + G +V + YT DR+R Sbjct: 246 AERAGLSGVSPHMLRHSFATHLLDGGADVRVVQELLGHASVATTQVYTLVTVDRLREVYA 305 Query: 335 NSR 337 + Sbjct: 306 AAH 308 >gi|85373645|ref|YP_457707.1| site-specific recombinase, phage integrase family protein [Erythrobacter litoralis HTCC2594] gi|84786728|gb|ABC62910.1| site-specific recombinase, phage integrase family protein [Erythrobacter litoralis HTCC2594] Length = 390 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 51/345 (14%), Positives = 104/345 (30%), Gaps = 18/345 (5%) Query: 14 ERTRHGKIIYYFR---KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK---K 67 G ++ R +G RRI L E A A R Sbjct: 43 RVRPSGNYFWFVRLRHRGKHRRITLGRTDELEAGLARAQARRILAETALDGLPKRAVVKA 102 Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR- 126 T+ + Y ++ +++++ I GD I I + Sbjct: 103 TPTMTDFVEAYWDDLSRVWKPSTTKRNWDAWRLDIKPTFGDTRVADILPADIHRWRDGCA 162 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-GIRPWTKEDMQQFKSF 185 + + + + L K+A + P+ K + R T + ++ + Sbjct: 163 GESEVKFNRAVPVLSALLKYAEALKMRRPGSNPCRGMPRYKRQSVERYLTPAEYRRIGAA 222 Query: 186 WSEGSQPR----LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 E R LL++G R + + ++ + KTG + Sbjct: 223 LREAEADRPAEVAIARLLLFTGARVGEIKNLRWEWVKPPRLLLPDSKTGPKVIWLNSQAQ 282 Query: 242 --MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISAD 299 + ++ + F K+ +N Q+ F+ + A + H +R A+ + Sbjct: 283 DVLAVIERREDSELVFPNKTGKRPVNFDQWWFVFRRRC--ALPDVRIHDLRHSFASTAIM 340 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 + G K V+ Y +D + + + RIS + Sbjct: 341 ENVPLSTIGKLLGHKLVETTAKYAHLSDD--VIGEAAERISGSLA 383 >gi|49486813|ref|YP_044034.1| integrase [Staphylococcus aureus subsp. aureus MSSA476] gi|49245256|emb|CAG43729.1| integrase [Staphylococcus aureus subsp. aureus MSSA476] gi|319894719|gb|ADV76530.1| integrase [Staphylococcus phage TEM126] Length = 345 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 45/329 (13%), Positives = 99/329 (30%), Gaps = 24/329 (7%) Query: 19 GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP--RKKPTTLKWLIS 76 GK Y K G+R R A + K + S TL+ Sbjct: 8 GKKWQYEFKHEGKRYRKKGFRTK------REANSAGLDKLNELRSGFNIDNYITLEEYFE 61 Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVES--RKHTPSSA 133 + K+ + N+ + + I + G + KI + + + ++H + Sbjct: 62 NWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDYSKEHAKETI 121 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVER----PKRKTEGIRPWTKEDMQQFKSFWSEG 189 + ++R A+ ++ NP V P + + E + Sbjct: 122 RKTNGAIRSALDDALYDGFIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEILKDHVRKKR 181 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-------KTGTIITVELPDGFM 242 ++ LA ++ +G R S + +H+ +I I M Sbjct: 182 TRSSLALFIMICTGCRVSGARNIKTEHINQVKNTIFIDERKTDTSPRYISIAKSDMKHIM 241 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301 +++ I + + +N + K+ + ++H +R + G Sbjct: 242 DVISTFAISYDGYIFKEAGSIINLQAINNALKSACRVNNIPIITSHALRHTHCSYLLAKG 301 Query: 302 ATAHELMATYGWKTVD-QAETYTKGADRI 329 + H + G K + Y+ + Sbjct: 302 VSIHYISKRLGHKNIAITTSVYSHLLEEK 330 >gi|319743915|gb|EFV96301.1| integrase [Streptococcus agalactiae ATCC 13813] Length = 362 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 45/351 (12%), Positives = 105/351 (29%), Gaps = 33/351 (9%) Query: 10 FVTKERTRHGKIIYYFRKG----HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65 + + ++G Y FR G++ + ++ A + + N Sbjct: 2 RIESYKKKNGTTAYRFRVYIGVIDGKKKYIKRSGFTSKKLAKQALINLQQEIE---NPKD 58 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 K K L + + + + + I+ G + + +T I+ + Sbjct: 59 KSTLLFKDLTKIWLDNYEKTVQGSTYLKTKRNIENHILPSLGSYQIKDLTPLIIQKYADE 118 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-----Q 180 + + + +R + AV+ +Y+ NP V PK + + + Sbjct: 119 WSTKLKYSSKIVGIVRNILNHAVKFQYITSNPSAPVSAPKIQRTINKKKDYYNKDELKEF 178 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--------------FSIKT 226 + ++ F L ++GLR + + +N T Sbjct: 179 VQLVYNTDDINIIATFRLLAFTGLRKGEMLALTWKDYRNGTLDVNKAITRDIAGEHIGPT 238 Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK---QKMNATQFSIWFKAKATKAG-- 281 + + + L M +L + + ++ TQ W + Sbjct: 239 KNKSSDRLISLDPETMNVLDNLHKTYPKTKYILESASGRWISPTQPRRWLVQILRDSISK 298 Query: 282 -VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330 HG R A++ ++G T ++ G + + TY + + Sbjct: 299 LEPIRIHGFRHTHASLLFESGLTLKQVQHRLGHEDLKTTMNTYVHITETAK 349 >gi|294795094|ref|ZP_06760229.1| prophage LambdaBa04, site-specific recombinase, phage integrase family [Veillonella sp. 3_1_44] gi|294454456|gb|EFG22830.1| prophage LambdaBa04, site-specific recombinase, phage integrase family [Veillonella sp. 3_1_44] Length = 403 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 44/381 (11%), Positives = 109/381 (28%), Gaps = 60/381 (15%) Query: 19 GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78 GK F ++ ++ + Y ++ + K T LK L + + Sbjct: 21 GKWRGQFSITKDNKLIRRAFSGNSKLEVYKLGKQWIEATQQNTSIFSSKNTKLKDLCNYW 80 Query: 79 RKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH--------- 128 + S+ + ++S I+ G+ IT + +++ + + + Sbjct: 81 LQDVKKVSVKPKTFQKYDSTLRLYILPLLGEIKITSITPQQVQTVLNNWSNGTLKGKKGH 140 Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ----- 181 + S+ + LF++AV + NP + P+ T I + +++ Q Sbjct: 141 IISSSTIRCTRRYLSELFEYAVNIGLLLKNPIKLTKPPRLITTEIHTLSLDEIHQLTSIM 200 Query: 182 --------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS---------- 223 + +A + L +G+R + + Sbjct: 201 KQQVSNNISSPYRINYYASYIAMKIALGTGMRLGEVFGLCWDCVDLIHGHISVRRTIQTG 260 Query: 224 ------IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF-------- 269 T+ + + + L + + + ++ Sbjct: 261 TKGQIFQDTKTKTSRRCIPISQELQSELTTYKEFQSNYAKELGDKWTDSYGVVISGTFGK 320 Query: 270 --------SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QA 319 S +F + + + H +R AT+ + G T+ Sbjct: 321 ILSTSNFKSRYFIPILKQLNLEHITFHDLRHTHATLLLSQKINPKIVQERLGHSTITLTL 380 Query: 320 ETYTKGA-DRIRLGIKNSRRI 339 +TY+ D + +K + Sbjct: 381 DTYSHLVPDIQKEAVKALDNL 401 >gi|264680261|ref|YP_003280171.1| phage integrase [Comamonas testosteroni CNB-2] gi|262210777|gb|ACY34875.1| phage integrase [Comamonas testosteroni CNB-2] Length = 348 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 43/303 (14%), Positives = 89/303 (29%), Gaps = 42/303 (13%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRK 127 L ++ Y + LA + + ++ + + + HIR Sbjct: 16 LPEVVHSYLEHVRVQKRLAERTHTLYALDLIKLQSFAQAAAQELLTLQPSHIRRFAAQMH 75 Query: 128 HTPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED------ 178 SA L+ R F+WA ++E V NP V PK + +D Sbjct: 76 GAGRSARGIALILSGWRSFFRWAAQRELVPFNPVEGVRGPKAAKPLPKALAVDDAVQLAS 135 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--------- 229 ++ ++ E L GLR ++ ++ Q + + Sbjct: 136 FHNPEADPWMEARDVAMTELLYSCGLRVAELVGLDLRPDQQSRHEGRGWIDLEAGDAHVQ 195 Query: 230 ---GTIITVELPDGFMKLLAMT---------------PIGKETFFINNDKQKMNATQFSI 271 V + ++ L + F+ ++++A Sbjct: 196 GKGSKRRIVPVGRMAIEALQRWLALRSSALVGTAQLKAQDEAALFVGRRGERLSAQSVWS 255 Query: 272 WFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 K + +AG+ H +R A+ + + G ++ + YT+ D Sbjct: 256 RLKQRGQQAGLATGVHPHVLRHSFASHMLQSSGDLRAVQELLGHSSIATTQIYTR-LDFQ 314 Query: 330 RLG 332 L Sbjct: 315 HLA 317 >gi|257899112|ref|ZP_05678765.1| phage integrase [Enterococcus faecium Com15] gi|257837024|gb|EEV62098.1| phage integrase [Enterococcus faecium Com15] Length = 379 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 50/376 (13%), Positives = 115/376 (30%), Gaps = 44/376 (11%) Query: 11 VTKERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 + + R Y ++K G+ ++ T A +A + + +K Sbjct: 1 MARLVKRGNSWQYEISYKKDDGKYTKIRKSGFKTKGEAKDAANELEYNLNKGLK-GDRKN 59 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK- 127 L ++ + G+++ + +E I + + + + Sbjct: 60 LLLSDYFEDWMQLYKEGTVSPITYRKYEDTLMNIKKYMPAVLISDLDRVGYQRFLNKYAK 119 Query: 128 -HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR---PWTKEDMQQFK 183 H S+ I+F +R K AV + + +P + + + + + Sbjct: 120 DHVKSTVIKFNNHIRASLKDAVEEGLIPFDPTRKAVIKGKDSLKPKEDKYLDYDQFKSLM 179 Query: 184 SFWSEGSQPRLAFEFLLY----SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------- 232 E + + L+ +G+R ++ + + I KT Sbjct: 180 KLVEENLSAQYSSPMLVLVAGATGMRFAELLGLTWEDIDFEDQIITINKTWNYKLNEWGK 239 Query: 233 -------ITVELPDGFMKLLAMTP-------------IGKETFFINNDKQKMNATQFSIW 272 + + + LL F N +++ S + Sbjct: 240 TKNETSNRKISIDKHTIDLLKKFKINQKELFDNFEVKNPHNFVFFNLKNGLVSSNAVSKY 299 Query: 273 FKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRI 329 + K + G+ K + HG+R A+I G + G +++ TY Sbjct: 300 LRKKLKELGIEKQFTLHGLRHTHASILLYQGVNILSVSKRLGHSSLETTMSTYLHIV--R 357 Query: 330 RLGIKNSRRISSVVDS 345 L ++ +I++V DS Sbjct: 358 ELEDQDKEKINAVFDS 373 >gi|251793385|ref|YP_003008113.1| site-specific tyrosine recombinase XerC [Aggregatibacter aphrophilus NJ8700] gi|247534780|gb|ACS98026.1| tyrosine recombinase XerC [Aggregatibacter aphrophilus NJ8700] Length = 295 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 37/271 (13%), Positives = 90/271 (33%), Gaps = 20/271 (7%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGVESRKHT 129 + +Y ++ ++ +++ +I+ +G ++++T +R + Sbjct: 4 ALQKYWTYLKIERQVSPHTLSNYQRQLVRIVEILQHAGIQQWQQVTPSVVRFVIAQSHKD 63 Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 S L+++R + V+ + +NP + PK+ + E +QQ + Sbjct: 64 GLHEKSLALRLSALRRFLSYLVQLGELKVNPATGISAPKQAKHLPKNIDTEQVQQLLAND 123 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 + R E L SGLR S+ + + + ++ V L Sbjct: 124 SKEPIDIRDRAIIELLYSSGLRLSELQGLNLNSINIRVREVRVIGKGNKERVVPLGRYAS 183 Query: 243 KLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFS 293 + E F++ +M+ + + + + + H +R Sbjct: 184 HAIQQWLKVRLLFNPKDEALFVSQLGNRMSHRAIQMRLETWGIRQRLNSHLNPHKLRHSF 243 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324 AT +A + + G + + YT Sbjct: 244 ATHMLEASSDLRAVQELLGHSNLSTTQIYTH 274 >gi|219854815|ref|YP_002471937.1| hypothetical protein CKR_1472 [Clostridium kluyveri NBRC 12016] gi|219568539|dbj|BAH06523.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 355 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 43/293 (14%), Positives = 94/293 (32%), Gaps = 46/293 (15%) Query: 85 GSLAVNSRISFESYFDQIIRKSG--------------------------DFDYRKITTKH 118 + N+ ++ +R + Sbjct: 55 KGKSKNTLEGYKVDLTMFLRFLKLYKGLEKEGSQFEKIKIKDIDIDIIKQITLSDL-FAF 113 Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 I R + + + + S++ FK+ + + ++ NP L +E P+ + + Sbjct: 114 ISFIENYRHNKSYARARKVASLKSFFKYLCSKAKLISENPALELESPQISKRNPIYLSLK 173 Query: 178 DMQQFKSFWS--EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 + + + F L G+R S+ C + +++ + + K T+ Sbjct: 174 ESKLLLESIDGKFKERDYCIITFFLNCGMRLSELCSINISNIKEDTLT-VIGKGNKERTI 232 Query: 236 ELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN-- 283 L ++ L ++ + FI+ + ++N I K KA ++ Sbjct: 233 YLNKSCLEALKNYLTSRDEYLNKIKDKDALFISKNYARINKRSVEIMLKKYLKKANLDSE 292 Query: 284 -KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD-RIRLGI 333 + H +R +AT+ G L G + V + YT D R+R I Sbjct: 293 KYTPHKLRHTAATLMYKYGHVDIRSLQKILGHENVSTTQIYTHVDDERLREAI 345 >gi|254450128|ref|ZP_05063565.1| phage integrase [Octadecabacter antarcticus 238] gi|198264534|gb|EDY88804.1| phage integrase [Octadecabacter antarcticus 238] Length = 315 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 45/274 (16%), Positives = 82/274 (29%), Gaps = 19/274 (6%) Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 +++ TT L + ++ ++ G T +R+ Sbjct: 22 KEEKTT--ALRQRMIEDMRIRAIGETTQKGHIRAIKHFATFLGRSP-DTATPDELRAYQL 78 Query: 125 SRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 T S+ + S+R+ F +E + + + E++ Sbjct: 79 HMTDTEVTTSTFNTRIVSLRLFFGVTCGREEMKRYMQFRRKP----RRLPVVLSVEEIGD 134 Query: 182 FKSFWS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELP 238 + G R A +GLR S+ C V + + + K G L Sbjct: 135 LLAAVPGPGLTYRAALGISYGAGLRASEVCHLKVVDIDSGRMLIHVDEGKNGKDRKAMLS 194 Query: 239 DGFMKLLAMTP----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292 G + LL F ++ Q + F + AG+NK + H +R Sbjct: 195 PGLLDLLREYWLEARPEGWLFPGKPKINPLSPRQLNRAFTSAKHMAGINKPATLHTLRHS 254 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA 326 AT +AG + G + YT A Sbjct: 255 FATHLLEAGTDVRVIQVLLGHSKLSTTARYTHVA 288 >gi|254689202|ref|ZP_05152456.1| Phage integrase [Brucella abortus bv. 6 str. 870] gi|256257452|ref|ZP_05462988.1| Phage integrase [Brucella abortus bv. 9 str. C68] gi|260754704|ref|ZP_05867052.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870] gi|260883729|ref|ZP_05895343.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68] gi|297248299|ref|ZP_06932017.1| hypothetical protein BAYG_01242 [Brucella abortus bv. 5 str. B3196] gi|260674812|gb|EEX61633.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870] gi|260873257|gb|EEX80326.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68] gi|297175468|gb|EFH34815.1| hypothetical protein BAYG_01242 [Brucella abortus bv. 5 str. B3196] Length = 341 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 58/333 (17%), Positives = 113/333 (33%), Gaps = 25/333 (7%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 + G+ YY G +R P + F+ + A + + + Sbjct: 11 KVNAKGRTYYYA-WRGGPALR-GEPGSAEFMASLQEA---------NDSRVIPDASKFRA 59 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVESRKH 128 +I+ Y+ S + LA +++ ++ + D+I +K GD + IR Sbjct: 60 VITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSIAQFDLPQKIRPVIRKWRGEFAD 119 Query: 129 TPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 P +A + + + +AV ++ NPC +++ + WT +D+ + K+ Sbjct: 120 KPRTADYGMQVLSRVLSYAVDPLGKISQNPCEGIKQLYKNDRAAIIWTDQDIARLKTKC- 178 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLL 245 + A + ++GLR D R H+ +N + + + L LL Sbjct: 179 -SPEVAWAVDLAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRHTKEAVIPLYAELRALL 237 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGA 302 P N K F F +A + + H R +AT AG Sbjct: 238 QTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCRGEAKLGDRDLHFHDFRGTAATKFYIAGL 297 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 + + GW+ + R I+ Sbjct: 298 SERVIAEIMGWEEETVRNIIRRYVSR-TAAIEA 329 >gi|146280903|ref|YP_001171056.1| site-specific tyrosine recombinase XerC [Pseudomonas stutzeri A1501] gi|166918896|sp|A4VGW3|XERC_PSEU5 RecName: Full=Tyrosine recombinase xerC gi|145569108|gb|ABP78214.1| integrase/recombinase XerC [Pseudomonas stutzeri A1501] gi|327479172|gb|AEA82482.1| site-specific tyrosine recombinase XerC [Pseudomonas stutzeri DSM 4166] Length = 299 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 42/295 (14%), Positives = 95/295 (32%), Gaps = 24/295 (8%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVESRK 127 + Y + L+ +S ++ D+++ G D + +H+ + + Sbjct: 5 LDAYFEYLRSARQLSGHSLDAYRRDLDKVLTYCERERIAGWRDLQGRHLRHLIAEQHRQG 64 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + S + L+S+R L+++ ++ +P + PK + R + Q Sbjct: 65 QSSRSLARLLSSVRGLYRYLNQEGLCEHDPATGLSAPKGERRLPRLLDTDRAMQLLDGGV 124 Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFM 242 E + + E SGLR S+ + L ++ K + + + Sbjct: 125 EDDFIARRDQAMLELFYSSGLRLSELVGLNLDQLDLAAGLVRVLGKGNKVRELPVGSKAR 184 Query: 243 KLLAMTPIGKE-------TFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSA 294 + L + FI +++ A + + + G + H +R A Sbjct: 185 EALQAWLPLRTLAGPADGAVFIGQQGRRLGARAVQLRVRQAGVRELGQHLHPHMLRHSFA 244 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG---IKNSRRISSVVDSD 346 + ++ + G + + YT D L R D+D Sbjct: 245 SHLLESSQDLRSVQELLGHADIGTTQIYTH-LDFQHLAKVYDHAHPRAKRKQDTD 298 >gi|302528010|ref|ZP_07280352.1| tyrosine recombinase XerD [Streptomyces sp. AA4] gi|302436905|gb|EFL08721.1| tyrosine recombinase XerD [Streptomyces sp. AA4] Length = 310 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 49/283 (17%), Positives = 91/283 (32%), Gaps = 30/283 (10%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126 ++ I+ Y A N+ S+ + G ++T H+ S + Sbjct: 8 VRGAIATYLDHLVVERGTARNTLDSYSRDLRRYAAHLEAAGVVRLAEVTPAHVTSFGAAL 67 Query: 127 KHT--------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + SSA + L ++R L K+A +P V P + D Sbjct: 68 REGDEEHQPLAASSAARALVAVRGLHKFAHADGLTEHDPARDVRPPAAAKRLPKALPVAD 127 Query: 179 MQQFKSFWSEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTII 233 + + + R E L +G R S++ V + + ++ K G Sbjct: 128 VLKLLDTPPRDGERALRDRALLELLYSTGARISEAVGLDVDDVDDTERTVLLDGKGGKQR 187 Query: 234 TVELPDGFMKLLAMTPIGKET-----------FFINNDKQKMNATQFSIWFKAKATKAGV 282 V + ++ L + F+N +++ K A +AG+ Sbjct: 188 LVPIGRPALEALDAYLVRARPALAANGRGTSAIFLNARGSRLSRQSAWQVLKDTAERAGI 247 Query: 283 N--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 S H +R AT + GA + G +V + YT Sbjct: 248 TAAVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYT 290 >gi|307943606|ref|ZP_07658950.1| putative phage integrase [Roseibium sp. TrichSKD4] gi|307773236|gb|EFO32453.1| putative phage integrase [Roseibium sp. TrichSKD4] Length = 414 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 50/331 (15%), Positives = 87/331 (26%), Gaps = 15/331 (4%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLP---------YPHESTFIPAYMSALTGSTPKRE 59 P R G Y+ G R R A A + Sbjct: 40 PGFGVYRNATGPARYFVHFRVGTRQRKKMIGLVTEMSLSDARAEAGALKVAARQGRDVIQ 99 Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119 ++ TL + + + + + + + K I+ I Sbjct: 100 ERKEELQRGITLSEAYLAFLDALERKGGSPRTVKGYSQNWRTRLSKHSSTPLGDISKADI 159 Query: 120 RSGVESRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE- 177 R+ + P++A Q L R ++ A+R + R+ + E Sbjct: 160 RAWHKKWGECGPTAANQSLRLFRAIYNHAIRTSDGLPPNPSNAVDQFRERGERKWLEWEA 219 Query: 178 -DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 E R + FLLYSGLR SD+ + + K G + + Sbjct: 220 LPAWMADVERLENPIRRALWPFLLYSGLRRSDAASIRWDEVGETSIHRPSPKGGRLRAFD 279 Query: 237 -LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSAT 295 + + T A + K + S H +R+ AT Sbjct: 280 LPLSSKLSEILEDAREAHTLLFPMSPYVFPANSAYGHVETLKEKTIPHVSPHMLRRTFAT 339 Query: 296 ISADAGATAHELMATYGW--KTVDQAETYTK 324 +AG + D Y + Sbjct: 340 ACVEAGLDPYTTKRLLNHTVARGDVTALYVR 370 >gi|294644652|ref|ZP_06722402.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294809546|ref|ZP_06768241.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] gi|292639986|gb|EFF58254.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294443246|gb|EFG12018.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] Length = 356 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 96/302 (31%), Gaps = 18/302 (5%) Query: 46 AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-- 103 Y SA+ + + E + + S + + + +++ + + Sbjct: 42 EYDSAILYTDKENEIAAQNERSEQDFIKYFNR-IISTRHPNSSDSIIVNWRRVGELLKMY 100 Query: 104 --------RKSGDFDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMRVLFKWAVRQEY 152 + I +R+ + K + ++A + + ++ K A EY Sbjct: 101 SQGQPIPFKAISVKLLEDIKMFLLRAPMGGNKKGTISQNTASTYFSILKAGLKQAFIDEY 160 Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212 + ++ V+ + T ++Q + + AF F + +GLR SD Sbjct: 161 LTVDISAKVKGITNIEKPRVALTMNEVQMLVDTPCKDDVLKRAFLFSILTGLRHSDIQTL 220 Query: 213 GVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS 270 + +Q + + L + I + + +A+ S Sbjct: 221 KWKQIQQTSKGTWQAVVIQQKTKRPDYKPVIQQALQLCGIRPDDDEALVFEGLTDASWIS 280 Query: 271 IWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 K +G+ K + H R A++ + G + + + G V + YT + Sbjct: 281 RPLKVWIEASGIKKHITFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHIVNE 340 Query: 329 IR 330 + Sbjct: 341 QK 342 >gi|254450213|ref|ZP_05063650.1| phage integrase [Octadecabacter antarcticus 238] gi|198264619|gb|EDY88889.1| phage integrase [Octadecabacter antarcticus 238] Length = 315 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 45/274 (16%), Positives = 82/274 (29%), Gaps = 19/274 (6%) Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 +++ TT L + ++ ++ G T +R+ Sbjct: 22 KEEKTT--ALRQRMIEDMRIRAIGETTQKGHIRAIKHFATFLGRSP-DTATPDELRAYQL 78 Query: 125 SRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 T S+ + S+R+ F +E + + + E++ Sbjct: 79 HMTDTDVTTSTFNTRIVSLRLFFGVTCGREEMKRYMQFRRKP----RRLPVVLSVEEIGD 134 Query: 182 FKSFWS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELP 238 + G R A +GLR S+ C V + + + K G L Sbjct: 135 LLAAVPGPGLTYRAALGISYGAGLRASEVCHLKVVDIDSGRMLIHVDEGKNGKDRKAMLS 194 Query: 239 DGFMKLLAMTP----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292 G + LL F ++ Q + F + AG+NK + H +R Sbjct: 195 PGLLDLLREYWLEARPEGWLFPGKPKINPLSPRQLNRAFTSAKHMAGINKPATLHTLRHS 254 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA 326 AT +AG + G + YT A Sbjct: 255 FATHLLEAGTDVRVIQVLLGHSKLSTTARYTHVA 288 >gi|302341552|ref|YP_003806081.1| integrase family protein [Desulfarculus baarsii DSM 2075] gi|301638165|gb|ADK83487.1| integrase family protein [Desulfarculus baarsii DSM 2075] Length = 401 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 44/325 (13%), Positives = 93/325 (28%), Gaps = 19/325 (5%) Query: 22 IYYFRKGHGRRIRLPYPHESTFIPAYMSALT-----GSTPKREYINSPRKKPTTLKWLIS 76 Y + G RR+ L + T A A + T+ L + Sbjct: 44 QYRSQTGRTRRMALGQVGKITLDEARTLAQRVFSDVAKGLDPSANRKQGRTAPTVAELCA 103 Query: 77 EYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSGVESR-KHTPSSAI 134 Y S++ ++ I + G ++ + + + TP A Sbjct: 104 RYLAEHAQAKKKPASQVRDRRLIERFIIPQLGGEKVNTLSRADVAKLHNAIGRETPIQAN 163 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR---------PWTKEDMQQFKSF 185 + L + + A+R + +R E R + + ++ Sbjct: 164 RTLAVVSKMMTLAIRWGLRDEAKGNPAQFIERFREAKRERYLSADELAQLGQALAAAENE 223 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 A FLL +G R ++ + + I + T G + + Sbjct: 224 GWGFRPAIDAIRFLLLTGARVGEALSLRWEWIDRERACIFLPDSKTGRKALPIGGAVLAM 283 Query: 246 AMTPIGKETFFINNDKQKMNAT--QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGA 302 + Q + + ++ +AG+ H +R A++ A +G Sbjct: 284 LDGLAKQAGNPHVFPGQSLGRPLVDINTTWRKVRARAGLEGVRLHDLRHSYASVGAASGL 343 Query: 303 TAHELMATYGWKTVDQAETYTKGAD 327 + + A G Y+ A+ Sbjct: 344 SLTLIGAILGHSEPSTTARYSHLAN 368 >gi|325270622|ref|ZP_08137220.1| phage integrase family integrase/recombinase [Prevotella multiformis DSM 16608] gi|324987017|gb|EGC19002.1| phage integrase family integrase/recombinase [Prevotella multiformis DSM 16608] Length = 330 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 33/263 (12%), Positives = 83/263 (31%), Gaps = 14/263 (5%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESRKH 128 L++ + + + + + S + ++ K + I T IR E R Sbjct: 54 ELLNAFIAAKKIEGCSDKTLHYYRSSIEALLAKL-NKKIDVIVTNDIRNYLSDYQEERLS 112 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + + F W ++Y+ +P + + + ++ + E+M+ + E Sbjct: 113 SRVTIDNLRRIFSSFFAWLEDEDYIGKSPVRRIHKVRTESLVKEVLSDENMEVLRDTCHE 172 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAM 247 + + L +G+R + + + + V L Sbjct: 173 -IRDLAMIDLLASTGMRVGELAKMNREDIDFQERQCVVFGKGNKEREVYFNARTKIHLKR 231 Query: 248 TPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADA 300 ++ ++ ++ + + + KAG+ H R+ AT++ D Sbjct: 232 YLESRKDNNPALFVSLSSPHNRLTISGVEVRLRQLGRKAGISKVHPHKFRRTLATMAIDK 291 Query: 301 GATAHELMATYGWKTVDQAETYT 323 G ++ G +D Y Sbjct: 292 GMPIEQVQKLLGHVKIDTTLHYA 314 >gi|323703842|ref|ZP_08115478.1| integrase family protein [Desulfotomaculum nigrificans DSM 574] gi|323531199|gb|EGB21102.1| integrase family protein [Desulfotomaculum nigrificans DSM 574] Length = 293 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 42/286 (14%), Positives = 93/286 (32%), Gaps = 24/286 (8%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESRKH 128 ++ E+ K + LA+++ +++ + D +T+ +R + Sbjct: 8 VLGEFLKEIRYNGLALSTVNAYQKDIAYFAKWYMDTTDKEPHLGDVTSIDLREYQGYMQS 67 Query: 129 ----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 P++ + + ++ +WA + YV P + + + + + + + Sbjct: 68 VQDLRPATINRRMAALEKYIRWAHEKGYVDRLPTF-PKIVREQKTPPKALGRVEQNRLLR 126 Query: 185 FWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQ---NNIFSIKTQKTGTIITVELPD 239 + R L GLR S+ + L + K V +P Sbjct: 127 EAERRGKVRNIALIRLMMSCGLRVSEVVAIRLTDLDIGERHGMVAVRGKGNKYREVPVPP 186 Query: 240 GFMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGVNKSAHGVRKF 292 K + I + + ++D + A K AG++ H +R Sbjct: 187 EARKAIREWMIERAKRYPDSDWLFPNRNGGHITARNAEQLVKNIGKFAGLDIHPHVLRHT 246 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338 +AT GA + G ++ YTK DR + + + Sbjct: 247 AATNMIRTGADLVTVAQILGHANLNTTAIYTK-PDRKTMM-EALEK 290 >gi|149184521|ref|ZP_01862839.1| phage integrase [Erythrobacter sp. SD-21] gi|148831841|gb|EDL50274.1| phage integrase [Erythrobacter sp. SD-21] Length = 299 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 43/276 (15%), Positives = 88/276 (31%), Gaps = 23/276 (8%) Query: 73 WLISEYRKSAHWG-SLAVNSRISFESYFDQIIR--KSGDFD-YRKITTKHIRSGVESRKH 128 ++ + G + ++ ++ ++++ +FD +++ +R+ + SR+ Sbjct: 5 EVLGAWHDHLAHGLRRSPHTVRAYHKAAERLLSRLHLHEFDQIAELSAGKLRTHLASRRS 64 Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + +SA + L++++ +A Q + P+ K RP T +D Sbjct: 65 DGLSNASAARELSALKSFIGFARAQAGHEQTDAPRMRGPRLKKGLPRPVTPDDAIGLAET 124 Query: 186 W-------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 G++ R L +G+R S++ L T K V L Sbjct: 125 IEELAVDGWVGARDRAVLLLLYGAGMRISEALSLKGGDLPLGETLTVTGKGNKQRVVPLL 184 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKM-------NATQFSIWFKAKATKAGVN--KSAHGV 289 +A D + G+ + H + Sbjct: 185 PLVRDSVATYVKQCPWPLGPKDPLFRGVKGGVLSQGVVQKATARARRALGLPDTATPHAL 244 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 R AT AGA L G ++ + YTK Sbjct: 245 RHSFATHLLGAGADLRSLQELLGHASLGSTQIYTKV 280 >gi|121998438|ref|YP_001003225.1| tyrosine recombinase XerD [Halorhodospira halophila SL1] gi|121589843|gb|ABM62423.1| tyrosine recombinase XerD [Halorhodospira halophila SL1] Length = 254 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 40/226 (17%), Positives = 75/226 (33%), Gaps = 17/226 (7%) Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-- 186 P + + L+S+R ++ V + +P VE P+ T+ ++ + Sbjct: 25 RPRTTARLLSSLRRFYRRLVSTGERSDDPTAEVEAPRLGQPLPGALTERQVEALLAAPDT 84 Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII----------- 233 G + R E L +GLR S+ V + ++ G Sbjct: 85 GDPLGLRDRCLLEVLYATGLRVSELVALRVDGVSLRQGVVRVIGKGDRERLVPLGEEAVD 144 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRK 291 V ++ L + E F+ + + F K A AG++ S H +R Sbjct: 145 WVRRYLEEVRPLLLDGRAAEALFVTRRGEGLTRQAFWYRVKRYAAAAGIDPAISPHTLRH 204 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 AT + GA + G + + YT A + + + Sbjct: 205 SFATHLINHGADLRVVQMLLGHADLSTTQIYTHVARQRLQQLHAAH 250 >gi|148258743|ref|YP_001243328.1| tyrosine recombinase XerD subunit [Bradyrhizobium sp. BTAi1] gi|146410916|gb|ABQ39422.1| tyrosine recombinase XerD subunit [Bradyrhizobium sp. BTAi1] Length = 308 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 42/278 (15%), Positives = 84/278 (30%), Gaps = 38/278 (13%) Query: 90 NSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRKHTPSSAIQFLTSMRVLF 144 N+ ++ + T + + +++R SS + L++MR LF Sbjct: 17 NTLDAYRRDLSDLSEFLAGKANSFTTADTQALRDYLADLDTRGFKSSSVARRLSAMRHLF 76 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE--------------GS 190 ++ + + + +P + PKR + + D+ + + E Sbjct: 77 RFLLSEHIRSDDPAAILSGPKRGRPLPKVLSIGDVDRMLTRAKELTETADASPAQRLRAL 136 Query: 191 QPRLAFEFLLYSGLRCSDSCR-AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT- 248 + E L +GLR S+ + + K V L + +A Sbjct: 137 RLYCLLEVLYATGLRVSELVALPRTAARHDARMIVVRGKGNKERLVPLNQASRQAMADYL 196 Query: 249 --------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRK 291 GK F + + F+ K A +G+ S H +R Sbjct: 197 AALDALKPEKKASATFGKWLFPSFGESGHLTRQHFARDLKELAVASGLPARLVSPHVLRH 256 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 A+ GA + G + + YT + Sbjct: 257 AFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEER 294 >gi|319936094|ref|ZP_08010516.1| hypothetical protein HMPREF9488_01347 [Coprobacillus sp. 29_1] gi|319808881|gb|EFW05399.1| hypothetical protein HMPREF9488_01347 [Coprobacillus sp. 29_1] Length = 301 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 26/272 (9%), Positives = 80/272 (29%), Gaps = 22/272 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 + Y + L + ++ +Q + + + + P + Sbjct: 6 VENYLNYCQYQKRLTGKTLKAYRIDLNQFYTYMQFKNLKNKKDISVYIQQLHTTYKPRTV 65 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-IRPWTKEDMQQFKSFWSEG--- 189 + + +++ + + +Q+++ NP ++ ++ + T ++ Sbjct: 66 KRKIAAIKAFYTYLEKQDFLKENPFHKIDYRFKEPIRLPKTITLHELNHLYQSLYAYSKQ 125 Query: 190 ------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDG-- 240 ++ E L+ +G+R S+ ++ +I + + + Sbjct: 126 TSNRVITRDIAILELLICTGIRVSEVSHLLKSNVFIRENTIIINGKGSKERIIYIDNQNL 185 Query: 241 ------FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKF 292 + +L FFIN ++ ++ + H R Sbjct: 186 IQSLLSYQRLFQDEIEKSPYFFINRLGHHLSEQSIRFMIVKYCHLFHIDSHITPHMFRHT 245 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324 AT+ + + G ++ + YT Sbjct: 246 FATMMLEEDVDIRYIQEILGHSSITTTQIYTH 277 >gi|118464686|ref|YP_882254.1| site-specific tyrosine recombinase XerD [Mycobacterium avium 104] gi|254775522|ref|ZP_05217038.1| site-specific tyrosine recombinase XerD [Mycobacterium avium subsp. avium ATCC 25291] gi|118165973|gb|ABK66870.1| tyrosine recombinase XerD [Mycobacterium avium 104] Length = 313 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 43/282 (15%), Positives = 87/282 (30%), Gaps = 36/282 (12%) Query: 78 YRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSGVESRKHT-PSS 132 Y +A N+ S+ + + D D K+ + + + + P + Sbjct: 13 YLDHLTIERGVAANTLSSYRRDLRRYTKHLSDRGISDLAKVGEDDVSDFLVALRRGDPDT 72 Query: 133 ---------AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 A + L ++R L ++ + ++ +V P + T + + Sbjct: 73 GAAALSAVSAARALIAVRGLHRFLAAEGLAELDVARAVRPPTPGRRLPKSLTIDQVLALL 132 Query: 184 SFW--------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIIT 234 + R E L +G R S++ V + S+ K G Sbjct: 133 EAAGGESPADGPLTLRNRALLELLYSTGARISEAVGLDVDDVDTQARSVLLRGKGGKQRL 192 Query: 235 VELPDGFMKLLAMTPIG-----------KETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 V + + L + F+N +++ + A +AG+ Sbjct: 193 VPIGRPAVAALDAYLVRGRSELARRGRGTPAIFLNVRGGRLSRQSAWQVLQDAAERAGIT 252 Query: 284 --KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 S H +R AT + GA + G +V + YT Sbjct: 253 SGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYT 294 >gi|291531296|emb|CBK96881.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3] Length = 391 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 53/373 (14%), Positives = 98/373 (26%), Gaps = 43/373 (11%) Query: 1 MTPSLRLPPFVTKERTRHGKI--IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKR 58 M + ++R G+ Y T + L Sbjct: 1 MAKRRPSGDGMVRKRE-DGRWEGRIVVGHKKNGDPIHRYVLARTQKELIVK-LHDCIEMY 58 Query: 59 EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTK 117 + TL + + ++ ++ S+++ QI GD +TT+ Sbjct: 59 RDADLTEDSNMTLGEWLDRWINEYMIFTIRESTLDSYKAMIKNQIKPYLGDRPLSALTTQ 118 Query: 118 HIRSGVESRKHTPS--------------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163 ++ + K + AVR + NP + Sbjct: 119 ELQKFYNTVKKKGRVKPDKLHGTELADSMVRGIHMMLHEALDMAVRLRLIVKNPTVGTTI 178 Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223 PK + E +++F + + F L +GLR + C + Sbjct: 179 PKNNYPPKQILNDEQLERFMKRIRQDKRWYDFFYTELTTGLRRGEICGLKWEDFDAENGK 238 Query: 224 IKTQKTGTIIT-----------------VELPDGFMKLLAMTPIG----KETFFINNDKQ 262 +K +++ + LP +LL I + Sbjct: 239 LKVRRSVAKRKGGGLNIGETKTETGTRTIVLPPSTAELLRKRKETAVSEWIFPNIYEPEN 298 Query: 263 KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAE 320 M+ K +A + H +R AT + G A L G + Sbjct: 299 PMHPDYAYHRLKTLLKQAELPLIRFHDLRHTFATHALAGGVDAKTLSGILGHTNASFTLD 358 Query: 321 TYTKG-ADRIRLG 332 TYT D R Sbjct: 359 TYTHVTTDMQRNA 371 >gi|169630285|ref|YP_001703934.1| site-specific tyrosine recombinase XerC [Mycobacterium abscessus ATCC 19977] gi|169242252|emb|CAM63280.1| Tyrosine recombinase XerC [Mycobacterium abscessus] Length = 304 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 42/307 (13%), Positives = 98/307 (31%), Gaps = 38/307 (12%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSG--- 122 L ++ E+ + +V+++ ++ + + ++ +RS Sbjct: 5 LAAILDEFAEHLALERGRSVHTQRAYRGDLTLLFDHLSASNPEATLADLSLPVLRSWLGA 64 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + S+ + +++++ WA R+ + +P + +++PK + ++ Sbjct: 65 QARQGAARSTVARRTSAVKIFTAWATRRGLLPTDPAIRLQQPKSRRTLPAVLRQDQAAAA 124 Query: 183 KSFWSEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTII 233 G + RL E L +G+R S+ C + + ++ K Sbjct: 125 MEAAHSGAEQDDPMALRDRLIVEMLYATGIRVSELCGLDIDDIDRPRKVLRVLGKGDKER 184 Query: 234 TVELPDGFMKLLAMTPIGKETFFINN----------DKQKMNATQFSIWFKAKATKAG-- 281 TV D L+ ++++ Q + Sbjct: 185 TVPFGDPAADALSAWLDRGRPHLAVPASGAALLLGARGRRVDPRQVRTVVHQTMSAVPGA 244 Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 + HG+R +AT + GA + G T+ + YT R+ + Sbjct: 245 PDIGPHGLRHSAATHLLEGGADLRVVQELLGHSTLATTQLYTHVT---------VARLRA 295 Query: 342 VVDSDDP 348 V D P Sbjct: 296 VHDQAHP 302 >gi|294791010|ref|ZP_06756168.1| putative tyrosine recombinase XerC [Scardovia inopinata F0304] gi|294458907|gb|EFG27260.1| putative tyrosine recombinase XerC [Scardovia inopinata F0304] Length = 322 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 46/301 (15%), Positives = 87/301 (28%), Gaps = 50/301 (16%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGV--ESRKH 128 ++ L+ ++R ++ D + G K+ T +R + ESR+ Sbjct: 9 AYEDFLAENQ--GLSQHTRTAYRGDVDQCLHFLSLRGVDSIEKVNTDLLRMWMAYESRRL 66 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---- 184 SS + + ++R F + +P + P+ TK+ Sbjct: 67 AKSSLARKIVAVRGFFAYTYVHGLSHSDPAADLGTPRLPQTLPSVLTKKQASALMDKAEE 126 Query: 185 -----------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTI 232 + + E L +G+R ++ + + T K Sbjct: 127 VYQTDRKEQSGRTAIDLRNDAIVELLYATGIRVAELVGLNTGDIDFSSRTVKVTGKGNKQ 186 Query: 233 ITVELPDGFMKLLAMT--------------------------PIGKETFFINNDKQKMNA 266 V L E F+ + ++N Sbjct: 187 RVVPFGAPASHALQEWLNRGRPSLVRKNSADGSSAGSKKNEDRQDSEAVFVGSRGGRINQ 246 Query: 267 TQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 Q A +AGV S H +R +AT D GA E+ G ++ + YT Sbjct: 247 RQVRQVVHRLAAEAGVPDISPHSLRHSAATHLLDGGADLREVQEMLGHSSLATTQRYTHV 306 Query: 326 A 326 + Sbjct: 307 S 307 >gi|289595770|ref|YP_003482466.1| integrase family protein [Aciduliprofundum boonei T469] gi|289533557|gb|ADD07904.1| integrase family protein [Aciduliprofundum boonei T469] Length = 270 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 39/267 (14%), Positives = 94/267 (35%), Gaps = 21/267 (7%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132 LI + + + + ++ +R ++T + S + S+ Sbjct: 15 ELIGKLIEEIKLRKYSYRTGKAYIYVVKNYLR-------SELTPREFLLKYYS-DKSKST 66 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 Q +++ ++ + + + P + + +++++++ + Sbjct: 67 IRQAYFALKFFYRNVLHERFNEEIPLAKKK-----EKLPVVLSRDEVKRMIYGTH-NIKH 120 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMTPI 250 RL FL Y+G+R + + ++ IK K V L L + Sbjct: 121 RLVLMFLYYAGMRLQEVRNIRWEDVEFEREIIHIKVAKGDKERVVFLHPNLKNTLEIYGR 180 Query: 251 GKETFFINNDK-QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHEL 307 + + + + +K + + K A +A +NK + H +R AT + GA + Sbjct: 181 KSKGYVFMSQRGKKYSPKSIQLIVKNAARRAKINKNVTPHTLRHSFATHLLEGGADIRYI 240 Query: 308 MATYGWKTVDQAETYTKGADR--IRLG 332 G K + + YT A++ +L Sbjct: 241 QQLLGHKHLKTTQIYTHVANKDIKKLA 267 >gi|126640131|ref|YP_001083115.1| site-specific tyrosine recombinase [Acinetobacter baumannii ATCC 17978] gi|126386015|gb|ABO10513.1| site-specific tyrosine recombinase [Acinetobacter baumannii ATCC 17978] gi|322506426|gb|ADX01880.1| Site-specific tyrosine recombinase [Acinetobacter baumannii 1656-2] gi|323517823|gb|ADX92204.1| site-specific tyrosine recombinase [Acinetobacter baumannii TCDC-AB0715] gi|323519204|gb|ADX93585.1| site-specific tyrosine recombinase [Acinetobacter baumannii TCDC-AB0715] Length = 310 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 28/279 (10%), Positives = 86/279 (30%), Gaps = 30/279 (10%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP--- 130 L+ ++ + + + + ++ + + + +I IR+ + R Sbjct: 7 LLKKWLDEYLLANKSNETIYTLKNSLNLFFEYT-NLALEEIEASDIRTFIAYRAQNGVGV 65 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS--- 187 S+ + ++++R F + +++ + NP ++ K + + + Sbjct: 66 STLKKNISAIRTFFHYLTKEKLINFNPAEDIKIKKSSKVLPKFHEVTVINEVLDSNKNLE 125 Query: 188 --------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-----TQKTGTIIT 234 + E GLR + +++++ ++ + + Sbjct: 126 FERPSSTVIFKRDLALIEIAYSCGLRLEEIHSLQIENVEVKRKQVRVTGKGNKTRIIPLG 185 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKM--------NATQFSIWFKAKATKAG--VNK 284 + + +++ L + + Q + K AG + Sbjct: 186 SKAIEAYLEWLPLREEIMNKDTNQKHNYVFVTTTGAQLSRVQINKRIKNAFKLAGYPIQS 245 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + H +R AT + E+ G ++ + YT Sbjct: 246 NPHMLRHSFATHLINNSVGIREIQEMLGHSNLNTTQIYT 284 >gi|60681230|ref|YP_211374.1| putative tyrosine recombinase [Bacteroides fragilis NCTC 9343] gi|60492664|emb|CAH07437.1| putative tyrosine recombinase [Bacteroides fragilis NCTC 9343] Length = 294 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 43/261 (16%), Positives = 88/261 (33%), Gaps = 15/261 (5%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSA 133 Y ++ + ++ ++ +YF + + + R I + I + + ++R + Sbjct: 16 YAETLRQLRYSEHTVRAYTAYFREFQQYFAGRNLRYIRPEEINAYIVHLIDTRGISSCQQ 75 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193 + S++ F + C V+R KR+ +KE+++ + Sbjct: 76 NLRINSIKFYF----EKVLGQERKCYEVKRAKRERTLPDVLSKEEIKSILDATGPDIRLF 131 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMT--- 248 F L +GLR S+ + + ++ K L ++ L Sbjct: 132 CMFSLLYSAGLRISELLDLKPHDINVSRSLIRVRQGKGRKDRYTLLSKPLVRKLTEYTKL 191 Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHE 306 +E F + + S K A +AG+ K H +R AT + G Sbjct: 192 YKPQEWLFERYKGEPFTESIVSKKLKEAAKEAGITKRVYPHLLRHSFATHLIEQGTDLKI 251 Query: 307 LMATYGWKTVDQAETYTKGAD 327 + G + E Y AD Sbjct: 252 VKELLGHNQLKTTEMYVHIAD 272 >gi|39933583|ref|NP_945859.1| tyrosine recombinase XerD [Rhodopseudomonas palustris CGA009] gi|39647429|emb|CAE25950.1| site-specific integrase/recombinase XerD [Rhodopseudomonas palustris CGA009] Length = 338 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 48/319 (15%), Positives = 96/319 (30%), Gaps = 42/319 (13%) Query: 53 GSTPKREYINSPRKKPTTLK-------WLISEYRKSAHW-GSLAVNSRISFESYFDQIIR 104 + + + P + TL+ L + + N+ ++ + Sbjct: 5 RTISRAAPLREPEAQAATLRPASYSDAGLTELFLDMIAAEQGASANTLDAYRRDLADLSH 64 Query: 105 KSGDFDYR--KITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCL 159 T +RS + + SS + L+++R LF++ + + A +P Sbjct: 65 FLSRRRLSIGSADTAALRSYLADLDNRGFATSSVARRLSALRHLFRFLLSERIRADDPAA 124 Query: 160 SVERPKRKTEGIRPWTKE-------DMQQFKSFWSEGSQPRLAFEFLLY-----SGLRCS 207 + PKR + + +Q G++ R A L +GLR S Sbjct: 125 ILAGPKRGRSLPKVLSIADVDQLLACARQEIDAAEGGARLRAARLNCLLEVLYATGLRVS 184 Query: 208 DSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK-------------E 253 + + + + I + V L G + +A Sbjct: 185 ELVSLPLSAARRDARMIVVRGKGDKERLVPLNAGAKQAMARYLEEMAAAKAPKDGPAPKW 244 Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMAT 310 F + + F+ K A +AG+ S H +R A+ GA + Sbjct: 245 LFPSFGESGYLTRQHFARDLKDLAARAGLAPRLVSPHVLRHAFASHLLHNGADLRIVQTL 304 Query: 311 YGWKTVDQAETYTKGADRI 329 G + + YT + Sbjct: 305 LGHSDISTTQIYTHVVEER 323 >gi|241664950|ref|YP_002983310.1| site-specific tyrosine recombinase XerC [Ralstonia pickettii 12D] gi|240866977|gb|ACS64638.1| tyrosine recombinase XerC [Ralstonia pickettii 12D] Length = 328 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 48/298 (16%), Positives = 86/298 (28%), Gaps = 41/298 (13%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGVESRKH- 128 I+ Y + + L+ ++ S+ + + + + D ++ + HIR + Sbjct: 19 IAAYLDALRFERQLSPHTLESYTRELAVLQRLGAQHAANIDLTQLQSHHIRRMMAQLHGD 78 Query: 129 --TPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + S + L++ R FKW R V NP V PK + + E Sbjct: 79 GLSGRSIARALSAWRGWFKWMALRDAAVTANPVDGVRAPKSPKRLPKALSVEQAVALMEQ 138 Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII-------- 233 E + R E GLR S+ ++H++ + + Sbjct: 139 LPGDDPETVRDRAVNELFYSCGLRLSELVSLDMRHVKAGAYESASWLDLEAREVQVLGKG 198 Query: 234 --------------TVELPDGFMKLLAMTPIGKETFFINNDKQKMNA---TQFSIWFKAK 276 + LA E + Q + K Sbjct: 199 SKRRTVPVGTKAAQALAAWLAVRAQLAKPDAAPEDAHALFLSPRGKRLAQRQIQLRMKRN 258 Query: 277 ATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 A AGV H +R AT + + G ++ + YT D L Sbjct: 259 AIAAGVPADVHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYT-SLDFQHLA 315 >gi|221133407|ref|ZP_03559712.1| Tyrosine recombinase xerC [Glaciecola sp. HTCC2999] Length = 383 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 57/355 (16%), Positives = 103/355 (29%), Gaps = 26/355 (7%) Query: 6 RLPPF--VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYM--------SALTGST 55 LP + T G Y FR + L + + A +A ++ Sbjct: 29 NLPKGFRIEIRNTSKGIGTYRFRTKD-KDHHLGRTNTISLEQALQQTTQLIPSAAPPHNS 87 Query: 56 PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKI 114 + +P TL +Y L + + ES + +I G I Sbjct: 88 LLPPIVQTPPTCALTLNEFWEQYYWPHIKTRL--RTFRNIESMWRLRIKPIFGKQRLDDI 145 Query: 115 TTKHIRSGVESRKHTPSSAIQ---FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 + S S + + +F A++ E + NPC VE K + Sbjct: 146 KVLELERFQTSLIEKRLSGSHVTGHIKLISRMFTLAIQWELITKNPCDKVEYMKFDNQKE 205 Query: 172 RPWTKEDMQQFKSFWSEGS--QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK- 228 R + E+ ++F L FLL +G+R + + + I Sbjct: 206 RFLSTEEQKRFIEVLMLHPQRPVNLLMIFLLVTGVRSGVAKALKWSWINMDKQIITVPPS 265 Query: 229 ---TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-- 283 T+ L M +L T+ N + F FK A ++ Sbjct: 266 IAKNKKQNTIFLNTTAMDILKRLAGTDPTYVFINPMTHLPYNDFKKSFKTALKAAQISDS 325 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337 H +R + + + + Y K + D +R + + Sbjct: 326 VRIHDLRHTFCSNLVSSNVSLASVQQLANHACYSTTLRYAKVSQDTLRQACQIAA 380 >gi|320535374|ref|ZP_08035488.1| putative tyrosine recombinase XerC [Treponema phagedenis F0421] gi|320147776|gb|EFW39278.1| putative tyrosine recombinase XerC [Treponema phagedenis F0421] Length = 307 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 46/285 (16%), Positives = 90/285 (31%), Gaps = 34/285 (11%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHT-- 129 +Y + + IS+ + D + ++ IR V + Sbjct: 7 FEKYLDYIAGIKHFSKQTVISYRNDLLLFDSWLTDSELKFTELGVSDIRIFVADLREKKF 66 Query: 130 -PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 P+S + L ++R L+++AVR NP L+V+ K + R E ++F + Sbjct: 67 APASINRMLATVRGLYRYAVRLNLCQTNPALAVKNLKLPKKLPRFLFPEQAKEFYNLPVN 126 Query: 189 -----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFM 242 ++ F L +G R S+ ++++ + +I K V D Sbjct: 127 KGLLWEARDAALFSVLYSTGCRVSEIAGLDMKNIDSKLNSAIVLGKGSKERKVFFADFAK 186 Query: 243 KLLAMT--------------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 + L + ++ FIN ++ A + Sbjct: 187 EYLQIYLAERNELLKKHAGEIQRDKTGRKRDALFINQRGMPLSVQGIQYIIDRYAAVSPD 246 Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 S H R A+ GA + G + + + YT Sbjct: 247 LKKISPHVFRHSFASTLISRGADIRVVQEMLGHENISTTQKYTHV 291 >gi|239906167|ref|YP_002952906.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1] gi|239796031|dbj|BAH75020.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1] Length = 348 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 55/342 (16%), Positives = 107/342 (31%), Gaps = 15/342 (4%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT--- 70 +R+ +G +R G+GR+ + + P T Sbjct: 5 KRSNNGTYYVAYRDGNGRQHTRSFGKGRDGKREAEKFDEQVKAHKVIEVPLEPAPPTSGK 64 Query: 71 ---LKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR 126 L L Y + ++ II +I I S V Sbjct: 65 KIFLDELSQMYINAKKAEGKSIRRLKELAVILERHIIPAFAQRPVEQIRFDEIISLVGKV 124 Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKEDMQQFK 183 K +P + ++L ++ +F++ V E + NP ++PK R + T + + Sbjct: 125 YAKRSPVTRGRYLAYLKTVFQFGVDNELIEKNPLRRWKKPKERPRDTRLTVTDLNKIKAA 184 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 + +A+ + +G + + +N ++ KT T + + D F+ Sbjct: 185 AEPHLAWAIEVAWNLGVRTGPSELLALKWSDVDWENQTVTVYATKTKTRRIIPISDEFLA 244 Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAG 301 L ++ FI + + Q S + +AG+ + VR AT G Sbjct: 245 RLREVKEAAQSPFIVEYQGRP-VKQISRAMRTACRRAGITYPVVLYDVRHLFATTLLREG 303 Query: 302 ATAHELMATYGWKTVDQAE-TYTKGA-DRIRLGIKNSRRISS 341 + G ++ Y D R I R+ Sbjct: 304 GDLSAVSNLMGHSSIQMTANNYYHLLGDEKRRTIAKLPRLEQ 345 >gi|255530752|ref|YP_003091124.1| integrase family protein [Pedobacter heparinus DSM 2366] gi|255343736|gb|ACU03062.1| integrase family protein [Pedobacter heparinus DSM 2366] Length = 294 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 40/287 (13%), Positives = 97/287 (33%), Gaps = 28/287 (9%) Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG---DFDYRKITTKHIRSGVES 125 T++ ++ Y + + ++ S+++ Q + ++ HIR+ + + Sbjct: 1 MTVEHFLT-YLQHE--KRYSSHTIQSYQTDLLQFTDFMQQTFELPLTEVKYVHIRNFIVA 57 Query: 126 RK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE----- 177 + +S + L+++R +K+ +R+ ++ NP V+ PK + Sbjct: 58 LMEDEISENSVGRKLSALRSFYKYLLRENVLSSNPMALVKAPKVPKRLPVFVDEGKLDLL 117 Query: 178 -DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---- 232 D ++F + + E L +G+R ++ + +I+ + Sbjct: 118 LDSEEFFDGSFPSLRDKTVIETLFGTGIRLAELLSLKETDINFYESTIRVMGKRSKERIV 177 Query: 233 ------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA--GVNK 284 +K L F+ + + T K Sbjct: 178 PIGKTLREQFRVYMELKTLQNFDNKTTMLFVTDKGAAAYPKLIYRTVQRYLTYVSTQDKK 237 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330 S H +R AT + GA + + G ++ + YT +R++ Sbjct: 238 SPHVLRHSYATSLLNRGADLNAIKELLGHASLAATQVYTHNSVERLK 284 >gi|222151085|ref|YP_002560239.1| tyrosine recombinase XerC protein [Macrococcus caseolyticus JCSC5402] gi|222120208|dbj|BAH17543.1| tyrosine recombinase XerC protein [Macrococcus caseolyticus JCSC5402] Length = 290 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 28/268 (10%), Positives = 75/268 (27%), Gaps = 18/268 (6%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHTP- 130 + + + + ++ ++++ Q I D+R + R+ + S+ + Sbjct: 6 LQRFLTYLKNERNFSDHTVTAYKNDVLQFIAFLEQEQLDFRTFEYRDARNYLVSQYNKGL 65 Query: 131 --SSAIQFLTSMRVL--FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 ++ + ++++R F + + + ++ Sbjct: 66 ERTTVSRRISALRSFYGFLYDGDESNPFVQLVHPKQKKYLPEFFYEKEMTLLFNSIDMSK 125 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLL 245 + + E L +G+R S+ + K + + L Sbjct: 126 PFAVRDKFILEMLYATGMRVSEFIELKSDAFDLGLMTVKVMGKGRKERIIPYGAYAHRSL 185 Query: 246 AMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATK--AGVNKSAHGVRKFSATI 296 + + I +D + A + + A + H +R AT Sbjct: 186 LDYMDFRNSMTITHDYLLINQRGGPLTARGLTYILDMLIKRSSADGHIHPHKLRHTFATH 245 Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324 + GA + G + YT Sbjct: 246 LLNNGADLRTVQELLGHVNLSTTSKYTH 273 >gi|187934306|ref|YP_001886003.1| site-specific tyrosine recombinase XerC [Clostridium botulinum B str. Eklund 17B] gi|187722459|gb|ACD23680.1| site-specific recombinase, phage integrase family [Clostridium botulinum B str. Eklund 17B] Length = 329 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 41/295 (13%), Positives = 99/295 (33%), Gaps = 48/295 (16%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD----------------------YRKIT 115 Y ++ + + N+ +++ R + + I Sbjct: 23 YLETI--KNKSTNTIAAYKKDLTIFFRFMKLYRGLIKEKNTEFEEIDIRDIDDDFLKSIK 80 Query: 116 TKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEG 170 + + + + + R ++ + + + +++ FK+ + + + NP + +E PK Sbjct: 81 LRDLYAFMSFIEKYRNNSAYARARKVATLKSFFKFLQGKAKIIVDNPTIELESPKINKRQ 140 Query: 171 IRPWTKEDMQQFK----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226 T + ++ L G+R S+ C ++ ++++I +I Sbjct: 141 PVYLTLDQSIHLLNSLDQSNKNYARDYCILILFLNCGMRLSELCGISIEKIRDDILTIIG 200 Query: 227 QKTGTIITVELPDGFMKLLAMTPI----------GKETFFINNDKQKMNATQFSIWFKAK 276 + TV L +K + K+ F+++ + +N I K Sbjct: 201 KGN-KERTVYLNAACLKAIENYMRIRDDSKALPENKKFLFLSSHNKPINQRTVEIMIKKH 259 Query: 277 ATKAGV---NKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD 327 AG+ + H +R +AT+ G L G + + + YT D Sbjct: 260 IKNAGLTDGKYTPHKLRHTAATLMYKYGEVDIRSLQNILGHENISTTQIYTHVDD 314 >gi|255690724|ref|ZP_05414399.1| glutamine amidotransferase, class I [Bacteroides finegoldii DSM 17565] gi|260623761|gb|EEX46632.1| glutamine amidotransferase, class I [Bacteroides finegoldii DSM 17565] Length = 343 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 53/302 (17%), Positives = 98/302 (32%), Gaps = 41/302 (13%) Query: 85 GSLAVNSRISFESYFDQIIRK--------SGDFDYRKITTKHIRSGVE----SRKHTPSS 132 +L+ N+++S+ F ++ + ITT I ++ RK + SS Sbjct: 28 RNLSRNTQMSYRDTFRMLVSYVSTLISIAIDNLKISDITTDVITKFLDYLEIERKVSVSS 87 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK--------- 183 L +++ K+ + I+ C V K R T D + + Sbjct: 88 RNNRLAAIKAFAKFLAWKSPEHIDWCHHVTLIPSKKTEKRMITYMDKSEIEALADAPLKT 147 Query: 184 -SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-----NIFSIKTQKTGTIITVEL 237 + S+ + F+ +G R S+ V+ + K L Sbjct: 148 CKYQGIRSRDHVIILFMYNTGARVSEVIGVKVKDVAMPSKRGMPMVTLHGKGRKERICPL 207 Query: 238 PDGFMKLLAMTPIGKETFFI---NNDKQKMNATQFSIWFKAKATKAGVNK--------SA 286 + F LL K N Q M+ K + +N S Sbjct: 208 WEDFWDLLKQFIDNKLPDDYLFLNRYNQPMSRFCIYEMIKKYSQDVILNHPSLANKRPSP 267 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346 H +R +AT ++GA + G ++D Y + + +L + ++ V SD Sbjct: 268 HVIRHTTATHLLNSGADIDMVRNWMGHSSIDTTNIYAEISMERKL--EVLKKCEQSV-SD 324 Query: 347 DP 348 P Sbjct: 325 TP 326 >gi|13473627|ref|NP_105195.1| site-specific tyrosine recombinase XerC [Mesorhizobium loti MAFF303099] gi|34222994|sp|Q98ED9|XERC_RHILO RecName: Full=Tyrosine recombinase xerC gi|14024377|dbj|BAB50981.1| site-specific recombinase, integrase/recombinase RipX; XerC [Mesorhizobium loti MAFF303099] Length = 312 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 45/291 (15%), Positives = 87/291 (29%), Gaps = 31/291 (10%) Query: 71 LKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIR- 120 L+ + K A L+ + ++E Q + G D + +R Sbjct: 12 LQAARESWLKMLARERRLSPETVEAYERDTRQFLHFLTGHCGGSPGISDIANLRPADLRG 71 Query: 121 --SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + + + L +R L ++ R+ V ++ P++ +P T D Sbjct: 72 FLAARRNAGAGARTLGRGLAGIRSLLRFLERRGLVNAAGAAALRAPRQPKSLPKPLTASD 131 Query: 179 MQQFK-------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--IKTQKT 229 +Q ++ L SGLR S++ L + + T K Sbjct: 132 AKQVVSVEGQLAEEPWIAARNAAVLTLLYGSGLRISEALGLAGADLASETDTVLRVTGKG 191 Query: 230 GTIITVELPDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKAGV 282 G V + ++ +A F +N + + Sbjct: 192 GKTRLVPVLPVALRAIAEYRRLCPYHLDPKGLLFRGARGGPLNPAIIQRDMAKLRSALNL 251 Query: 283 N--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 + H +R AT G + G ++ + YT G D RL Sbjct: 252 PDTATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQIYT-GVDTARL 301 >gi|293371342|ref|ZP_06617779.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|294645314|ref|ZP_06723030.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294808774|ref|ZP_06767507.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] gi|292633702|gb|EFF52257.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|292639393|gb|EFF57695.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294444071|gb|EFG12805.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] Length = 376 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 51/360 (14%), Positives = 103/360 (28%), Gaps = 37/360 (10%) Query: 4 SLRLPPFVTKERTRHGKIIYY---FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60 ++ P + + +G Y +R G L + Sbjct: 9 KVKEPIRLRTKELANGSKSLYLDIYRNGKRTYEYLKMYLIPETDRNARQQNETTMAAANA 68 Query: 61 INSPRKKPTT--------------LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS 106 I S R T L + Y++ +S D + + Sbjct: 69 IKSKRIIELTSGEAGIMNHKDKVYLLDWMQLYKEEQKKRGKKN--IGQIKSVTDILKEYA 126 Query: 107 GDF-DYRKITTKHIRSGVESR---------KHTPSSAIQFLTSMRVLFKWAVRQEYVAIN 156 G+ +I ++ + S+ + AVR + + N Sbjct: 127 GERFTLNQIDLTFCHGYIDYMLTNYRPKGKPISASTRNTYYQIFNGALNAAVRAKRILKN 186 Query: 157 P---CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213 P E+PK T E+++ + + + A+ F + GLR SD Sbjct: 187 PFNEMEKSEKPKMPESVRSYMTIEEVRSLIATPMQNEGVKSAYLFSCFCGLRISDIIGLQ 246 Query: 214 VQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272 + + + + + L P + ++ + + Sbjct: 247 WKDVFIDNGQYRLAVAMQKTKEPIYLPLSNEALKWMPERGDKTADDHVFDL--PSGINQL 304 Query: 273 FKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 K A AG++K + H R AT+ GA + + G +V + Y K ++ + Sbjct: 305 IKPWAKAAGISKRFTFHTARHTFATMMLTLGADLYTVSKLLGHTSVKMTQVYAKIVNKKK 364 >gi|260563980|ref|ZP_05834466.1| phage integrase [Brucella melitensis bv. 1 str. 16M] gi|260153996|gb|EEW89088.1| phage integrase [Brucella melitensis bv. 1 str. 16M] Length = 341 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 57/333 (17%), Positives = 112/333 (33%), Gaps = 25/333 (7%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 + G+ YY G +R P + F+ + A + + + Sbjct: 11 KVNAKGRTYYYA-WRGGPALR-GEPGSAEFMASLQEA---------NDSRVIPDASKFRA 59 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVESRKH 128 +I+ Y+ S + LA +++ ++ + D+I +K GD + IR Sbjct: 60 VITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSITQFDLPQKIRPVIRKWRGEFAD 119 Query: 129 TPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 P +A + + + +AV ++ NPC +++ + WT +D+ + K+ Sbjct: 120 KPRTADYGMQVLSRVLSYAVDPLGKISQNPCEGIKQLYKNDRAAIIWTDQDIARLKTKC- 178 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLL 245 + A + ++GLR D R H+ +N + + + L LL Sbjct: 179 -SPEVAWAVDLAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRHTKEAVIPLYAELRALL 237 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGA 302 P N K F F +A + H R +AT AG Sbjct: 238 QTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLYFHDFRGTAATKFYIAGL 297 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 + + GW+ + + I+ Sbjct: 298 SERVIAEIMGWE-EETVRNIIRRYVSKTAAIEA 329 >gi|319641219|ref|ZP_07995919.1| integrase [Bacteroides sp. 3_1_40A] gi|124107947|gb|ABM90616.1| integrase [Bacteroides uniformis] gi|145308091|gb|AAR05648.2| integrase [Bacteroides uniformis] gi|317387152|gb|EFV68031.1| integrase [Bacteroides sp. 3_1_40A] Length = 377 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 50/361 (13%), Positives = 108/361 (29%), Gaps = 34/361 (9%) Query: 2 TPSLRLPPFVTKERTRHGKIIYY---FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKR 58 ++ P + ++ G Y +R G L + Sbjct: 7 PTKVKEPVRLRTKKLADGSQSLYLDIYRFGKRTYEYLKLYLIPETDNNARRQNQATMNAA 66 Query: 59 EYINSPRKKPTT-------------LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK 105 I S R T L ++ Y+++ +I + Sbjct: 67 NAIKSKRIIELTNGEAGIETKERVYLLDWMNTYKENQAKRGKKDGYQIDI--TIRILKDY 124 Query: 106 SGDFDY-RKITTKHIRSGVESR---------KHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155 +G+ +I ++ ++ + + + + + AVR E + Sbjct: 125 AGERMLMDQIDKTFCQNYLDYLQSEYRSRGKRVSNYTLHTYYRVLNGALNAAVRAEIIKS 184 Query: 156 NPCLSV---ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212 NP + E+ + T E+++ + + + A+ F + GLR SD + Sbjct: 185 NPFTKISKSEKIRLPESKRSYMTIEEVRALIATPMKNESVKGAYLFSCFCGLRISDIIKL 244 Query: 213 GVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271 + + + + + + L P + ++ + +I Sbjct: 245 QWKDVFVDRGQYRLSVSMQKTKEPIYLPLSPEALKWMPARGDKTPDDHVFDLPSPAMVNI 304 Query: 272 WFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 K A AG+NK + H R AT+ GA + G V + Y K ++ Sbjct: 305 LIKPWAKAAGINKRFTFHTARHTFATMMLTLGADLYTTSKLLGHADVKMTQVYAKIINQK 364 Query: 330 R 330 + Sbjct: 365 K 365 >gi|320139614|gb|EFW31483.1| site-specific recombinase, phage integrase family [Staphylococcus aureus subsp. aureus MRSA131] Length = 345 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 45/329 (13%), Positives = 100/329 (30%), Gaps = 24/329 (7%) Query: 19 GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP--RKKPTTLKWLIS 76 GK Y K G+R R A + K + S TL+ Sbjct: 8 GKKWQYEFKYEGKRYRKKGFRTK------REANSAGLDKLNELRSGFNIDNYITLEEYFE 61 Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVES--RKHTPSSA 133 + K+ + N+ + + I + G + KI + + + ++H + Sbjct: 62 NWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDYSKEHAKETI 121 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVER----PKRKTEGIRPWTKEDMQQFKSFWSEG 189 + +++R A+ + NP V P + + E + Sbjct: 122 RKTNSAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEILKDHVRKKR 181 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-------KTGTIITVELPDGFM 242 ++ LA ++ +G R S + ++H+ +I I M Sbjct: 182 TRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTDTSPRYISIAKSDMKHIM 241 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAG 301 +++ I + + +N + K+ + ++H +R + G Sbjct: 242 DVISTFAISYDGYIFKEAGSIINLHAINNALKSACRVNNIPIITSHALRHTHCSYLLAKG 301 Query: 302 ATAHELMATYGWKTVD-QAETYTKGADRI 329 + H + G K + Y+ + Sbjct: 302 VSIHYISKRLGHKNIAITTSVYSHLLEEK 330 >gi|257870348|ref|ZP_05650001.1| integrase [Enterococcus gallinarum EG2] gi|257804512|gb|EEV33334.1| integrase [Enterococcus gallinarum EG2] Length = 377 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 45/370 (12%), Positives = 116/370 (31%), Gaps = 37/370 (10%) Query: 10 FVTKERTRHGKIIYYFRK------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63 + + ++G+ Y F+ + IR T A ++ S Sbjct: 9 RIKEYVKKNGEKAYMFKLYLGIDQDTKKPIRTTRRGFRTQREARLAIADLELNGLSKPES 68 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 + T + + + + + A + + + I+ G+ + I ++ + Sbjct: 69 EPQMIHTYEQIYNLWYEEYKTTVKASTLLKTERVFKNHILPAFGNKPIQDIKPMDAQNQM 128 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 A + ++F +A+R + + +NP +++P RK + + Sbjct: 129 NIWHKKLVRASMVMNYAGLIFDYAIRMQLINMNPTKVIKKPVRKESVREDKDMNFYDKDE 188 Query: 184 SFWSE-------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--------------- 221 + + F L ++G+R +S + Sbjct: 189 LKKFMAALENNNNFRAFVYFRLLAFTGMRKGESLALKWSDIDLEKQTLYINKAVSRSATG 248 Query: 222 -FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--NATQFSIWFKAKAT 278 + + +I + + D + +L + + + + W+ Sbjct: 249 LYIQTPKTPSSIRRISIDDKTVSILQEYKKESPDGLVFQSEDGGILSPAKPRKWYLTAMK 308 Query: 279 KAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIK 334 + S HG R A++ +AGA+ ++ + G + YT + + + Sbjct: 309 NLPDDFKQISIHGFRHTHASLLFEAGASIKDVQSRLGHSDIQTTMDVYTHVSKTAK--EQ 366 Query: 335 NSRRISSVVD 344 + R ++ VD Sbjct: 367 LANRFNNYVD 376 >gi|255292018|dbj|BAH90501.1| tyrosine recombinase [uncultured bacterium] gi|255292879|dbj|BAH89979.1| tyrosine recombinase [uncultured bacterium] gi|255292943|dbj|BAH90041.1| tyrosine recombinase [uncultured bacterium] gi|255293213|dbj|BAH90303.1| tyrosine recombinase [uncultured bacterium] Length = 399 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 57/365 (15%), Positives = 104/365 (28%), Gaps = 30/365 (8%) Query: 7 LPPFVTKERTRHGKI----IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE--- 59 L P + T G+ Y G R+ L E T A A R Sbjct: 27 LVPGFLCKITPSGRKVFMLQYRTNAGERRKPALGLYGELTVEQARSLAQEWLAQVRRGGD 86 Query: 60 --YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITT 116 + +K T+K L +++ + +++ ++S D+ I+ G + + Sbjct: 87 PSADKAVARKAPTVKELCTKFMEDYSKLRNKPSTQEGYQSVIDRNIVPMIGRMKVQDVKR 146 Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + ++ H P+ A + + MR +F A Y P Sbjct: 147 PDVAGMMKKMTHKPADANRTFSVMRRMFNLAEVWGYRPDGTNPCRHVPMFPNGKATHLIS 206 Query: 177 EDMQQFKSFWSEGSQPR--------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228 ++ E + LA R + + + Sbjct: 207 DEDMGKLFRHLERLEAEGLENYVIPLAIRLQFEFAGRRGEIVTLQWDWVDFENRRVVWPD 266 Query: 229 TGTIITVELPDGFMKLL-----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV- 282 + T + L N+ Q + ++ + AG Sbjct: 267 SKTGGMSKPMSEEAYRLLSTAPRQDDCPYVLPSPNHPGQHLTTGEYYNGWSRALKAAGAA 326 Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342 + HG+R SAT A++G MA KTV Y D R+ + + Sbjct: 327 HVGTHGIRHRSATDIANSGIPVKVGMALTAHKTVAMFMRYVHTED------DPVRKAAEL 380 Query: 343 VDSDD 347 V + Sbjct: 381 VANRR 385 >gi|253991592|ref|YP_003042948.1| site-specific tyrosine recombinase XerC [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638470|emb|CAR67092.1| tyrosine recombinase xerc [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253783042|emb|CAQ86207.1| tyrosine recombinase xerc [Photorhabdus asymbiotica] Length = 303 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 45/270 (16%), Positives = 92/270 (34%), Gaps = 20/270 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRS-GVESRKHT 129 I + + L+ + I++ + + + + +R + SR+ Sbjct: 12 IEAFLRYLRVERRLSPVTIINYRRHLSALAEMVLAIDVRQWEDLDPAKVRMLVIRSRRAG 71 Query: 130 PSSAIQFLTSMRV--LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 SA L + W V Q +A+NP +V P K + +++ Q + Sbjct: 72 LQSANLSLRLSSLRSFLDWQVTQGVMAVNPGKAVSTPGTKRHLPKNIDVDEVNQLLNINF 131 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243 + R E + +GLR S+ +HL + + K V L ++ Sbjct: 132 NEPLSVRDRTMLEVMYGAGLRLSELVGLDCRHLDLESGEVWVSGKGSKERKVPLGQTAVE 191 Query: 244 LLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 L +E F FI+N ++++ F + G+ + H +R A Sbjct: 192 WLNRWLEMRELFKPGDNAVFISNRGRRISTRNVQQRFAQWGIRQGINSHIHPHKLRHSFA 251 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324 T ++ + G ++ + YT Sbjct: 252 THILESSGDLRAVQELLGHASLSTTQVYTH 281 >gi|218442353|ref|YP_002380677.1| integrase family protein [Cyanothece sp. PCC 7424] gi|218175457|gb|ACK74184.1| integrase family protein [Cyanothece sp. PCC 7424] Length = 273 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 50/264 (18%), Positives = 94/264 (35%), Gaps = 13/264 (4%) Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 R T +I + + + IS++ + Q + G R +T + V Sbjct: 6 RATSDT--EIILLWLN-----GKSKTTIISYQCHIKQFLEFVG-KPLRDVTLDDLSLWVN 57 Query: 125 SRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 T P + + +++ LF +A R Y+ +N ++ PK K ++ + Sbjct: 58 RLNLTYQPVTVANKILTVKSLFSFACRVGYLTVNVGSFIKSPKLKDTLAERILEKAEVKR 117 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242 + + + + GLR S+ C L+N + K V +P Sbjct: 118 LINATPNERDSVLLSLMYGCGLRVSEVCGLNWSDLRNGKAT-VFGKGAKTRVVIIPPNLW 176 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300 L P E F++ ++ T K K+GV S+H +R A+ + +A Sbjct: 177 DRLMQLPRDGEAVFMSRRGNRLERTYIHKMIKECCHKSGVSEKASSHWLRHSHASHAVEA 236 Query: 301 GATAHELMATYGWKTVDQAETYTK 324 G L + G ++ E Y Sbjct: 237 GCNLRLLQQSLGHSKLETTEKYLH 260 >gi|255283924|ref|ZP_05348479.1| tyrosine recombinase XerD [Bryantella formatexigens DSM 14469] gi|255265506|gb|EET58711.1| tyrosine recombinase XerD [Bryantella formatexigens DSM 14469] Length = 305 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 37/278 (13%), Positives = 85/278 (30%), Gaps = 28/278 (10%) Query: 78 YRKSAHWGS-LAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESRKHTPSSAIQ 135 Y + + L N+ ++ Q D ++ +I + K + + Sbjct: 10 YLEYCEYRKELDKNTIKAYRIDLCQYFTFICCDEPNKEKIEVYITELHKKYKQK--TVKR 67 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKR-------------KTEGIRPWTKEDMQQF 182 + S++ + + +E ++ NP ++ + + + + Sbjct: 68 KIASLKAFYNYLEEEEIISYNPFRKIKVKFKETITLPRIILREEIEKLLNYMYDCLKKNV 127 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGF 241 + + + E L +G R + + N I+ G V++ + Sbjct: 128 LTGYKYQLRDIAVVEVLFATGARVYEISNIREDSVNLNSGQIRIMGKGGKERYVQISNSS 187 Query: 242 MKLLAMTPIGKE--------TFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRK 291 + + + FFINN + K A +AG+ N + H R Sbjct: 188 VLAVLRKYYKQNENEIKKSGCFFINNRGNRYTEQSIRSMLKKYAKQAGIARNITPHMFRH 247 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + G + G ++ + Y A + Sbjct: 248 SFATYLIEEGVDVSCVQQIRGHSSIKTTQIYIHIAAKK 285 >gi|196230590|ref|ZP_03129452.1| integrase family protein [Chthoniobacter flavus Ellin428] gi|196225520|gb|EDY20028.1| integrase family protein [Chthoniobacter flavus Ellin428] Length = 315 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 43/302 (14%), Positives = 94/302 (31%), Gaps = 45/302 (14%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD----------------------YRKIT 115 Y + L+ N ++S + R + ++T Sbjct: 11 YLATE--RGLSENYQLSTRLSLEGFARWLEKRNAGKEAESKDPLGEEEETLPEVAPGEVT 68 Query: 116 TKHI---RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 + I + + + +S + ++++ F+W ++ + + + P+ + Sbjct: 69 HQQITDYLAHKKRLGLSAASIKLIVVALKIFFRWLHARKRIERDVAEVLPLPRTERYLPE 128 Query: 173 PWTKEDMQQFK----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--- 225 + + + G + R E L SGLR S+ A +++L + I+ Sbjct: 129 TMNELQVDRLLEGISIDAPRGLRDRALLELLYASGLRVSELVNARLENLDLDARIIRVTG 188 Query: 226 --TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------FSIWFKAKA 277 + + + D L ++ + KA A Sbjct: 189 KGNKMRLVPVGQKACDAIRAYLEKERPEMVGKKTGSEVFLSSRGTKLTTVRIWQIVKACA 248 Query: 278 TKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 AG++ + H +R AT GA + G + + YT D+ RL + Sbjct: 249 KNAGLDINVYPHLLRHSFATHLLSNGADLRIIQEMLGHADISTTQIYTH-VDQQRLKAVH 307 Query: 336 SR 337 R Sbjct: 308 HR 309 >gi|145639433|ref|ZP_01795038.1| tyrosine recombinase [Haemophilus influenzae PittII] gi|145271480|gb|EDK11392.1| tyrosine recombinase [Haemophilus influenzae PittII] Length = 295 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 36/271 (13%), Positives = 87/271 (32%), Gaps = 20/271 (7%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESR 126 ++ Y ++ ++ +++ D I+ D T + I + + + Sbjct: 4 ALNRYWDYLRIERQMSPHTITNYQHQLDATIKILAQQDIHSWTQVTPSVMRFILAESKKQ 63 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 S L+++R + V+Q + +NP + PK+ + E +QQ + Sbjct: 64 GLKEKSLALRLSALRRFLSFLVQQGELKVNPATGISAPKQGRHLPKNMDGEQVQQLLAND 123 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 + R E + SGLR S+ + + + ++ V Sbjct: 124 SKEPIDIRDRAILELMYSSGLRLSELQGLDLNSINTRVREVRVIGKGNKERVVPFGRYAS 183 Query: 243 KLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293 + E F++ +++ + + + + + H +R Sbjct: 184 HAIQEWLKVRALFNPKDEALFVSQLGNRISHRAIQKRLETWGIRQDLNSHLNPHKLRHSF 243 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324 AT +A + + G + + YT Sbjct: 244 ATHMLEASSDLRAVQELLGHSNLSTTQIYTH 274 >gi|124028392|ref|YP_001013712.1| integrase [Hyperthermus butylicus DSM 5456] gi|123979086|gb|ABM81367.1| possible integrase [Hyperthermus butylicus DSM 5456] Length = 406 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 33/265 (12%), Positives = 74/265 (27%), Gaps = 17/265 (6%) Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP-----SSAIQFL-TSMR 141 + + ++ + + GD +I + + + + R SS L R Sbjct: 35 SPKTVKAYRAALRDFLDFIGDKHIFQIDSSDVSAWIYERLSKGVRRPRSSGNNLLDARSR 94 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK----EDMQQFKSFWSEGSQPRLAFE 197 L ++ + R + + + L Sbjct: 95 QATMHYYTLFLRGFLAWLGLDVKVPVVKKPRGARVEALSREEVEKLLAAARDPLDLLIVA 154 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPDGFMKLLAMTPIGKETF 255 L +GLR ++ + + I+ + K G V + + Sbjct: 155 LLFETGLRAQEAVELRLGDIDFQRREIRVRGAKYGEERIVLYGPLTEYAMQIWLQLHPDM 214 Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYG 312 ++ ++ + K A +AG++ H +R AT + G + G Sbjct: 215 KPDDKLLGISYSGLYKRLKTLAKRAGLDPRKVRPHVLRHTFATEALRRGLPLPAVQRLLG 274 Query: 313 WKTVDQAETYTKGADR--IRLGIKN 335 K + + Y + RL + Sbjct: 275 HKDIKVTQVYLHLVNEDIRRLYQQA 299 >gi|15677703|ref|NP_274864.1| integrase/recombinase XerC [Neisseria meningitidis MC58] gi|34223071|sp|Q9JXV6|XERC_NEIMB RecName: Full=Tyrosine recombinase xerC gi|7227126|gb|AAF42202.1| integrase/recombinase XerC [Neisseria meningitidis MC58] gi|325139527|gb|EGC62067.1| tyrosine recombinase XerC [Neisseria meningitidis CU385] gi|325200925|gb|ADY96380.1| tyrosine recombinase XerC [Neisseria meningitidis H44/76] Length = 301 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 40/289 (13%), Positives = 87/289 (30%), Gaps = 26/289 (8%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD---YRKITTKHIRSGVESRK 127 L + Y ++ + ++ ++ +++ + T + Sbjct: 6 LAAYLDAYLENIVREGKSEHTVAAYRRDLQELLALLEEMPSANPSNCTRGDFVQALRRLS 65 Query: 128 HTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + + L+S R W V++ + +P ++ PK+ + +E + + Sbjct: 66 GRGLGERTLARKLSSWRQYCVWLVKRGLMHADPTADIKPPKQPERVPKALPQEWLNRMLD 125 Query: 185 FWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELP 238 +G + FE + SGLR S+ + + + K V L Sbjct: 126 LPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVIGKGRKQRQVPLV 185 Query: 239 DGFMKLLAMTPIGKETFFIN---NDKQKMNATQFSIWFKAKATKA-----GVNKSAHGVR 290 ++ L ++T + K A A G + S H +R Sbjct: 186 GKSVEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHVSPHMMR 245 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 A A + G ++ + YTK L + R+ Sbjct: 246 HSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK------LDFDHIARL 288 >gi|288941419|ref|YP_003443659.1| integrase family protein [Allochromatium vinosum DSM 180] gi|288896791|gb|ADC62627.1| integrase family protein [Allochromatium vinosum DSM 180] Length = 398 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 51/347 (14%), Positives = 98/347 (28%), Gaps = 21/347 (6%) Query: 8 PPFVTKERTRHGKI--IYYFRKGHGRR-IRLPYPHESTFIPAYMSALTGSTPKREYINSP 64 PP G+ + +R +R + + T A + A P Sbjct: 28 PPGFGLRIYPSGRKAFVLSYRSQGRKRLMTIGTYGVLTLDQARIQARAELAKVETQGADP 87 Query: 65 RKKPT------TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH 118 T + L Y + + ++ G +T Sbjct: 88 LAVRQRQAQGETFRDLCQTYMERHGQAKKSGT--DDQRRIDRHLLPLWGSLKVPAVTRAD 145 Query: 119 IRSGVESRKHT-PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT--EGIRPWT 175 + + P A + L + +F A R +V R + R T Sbjct: 146 VAALHSKIGKAHPYEANRVLALLSKMFDLARRWGFVPEGHPNPARDIDRFKEAKRDRWVT 205 Query: 176 KEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233 E++ + +E R L +G R S+ RA + ++ T Sbjct: 206 PEELPRLAQAINEEPNQSARFGLWLYLLTGARKSELLRARWDDVDWTRAELRIPDTKAGR 265 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT---QFSIWFKAKATKAGV-NKSAHGV 289 +P L + I + + K++ + + AGV + H + Sbjct: 266 VHYIPLSAAALALLREIPRVAGNPHILPGKLDGAHLVNINKPWDRVRRAAGVEDVRVHDL 325 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKN 335 R+ + A AG + H + Y + G D +R ++ Sbjct: 326 RRTVGSWLAQAGNSLHLIGRVLNHSNQSTTAIYARFGEDSVRAALEQ 372 >gi|149278899|ref|ZP_01885034.1| integrase [Pedobacter sp. BAL39] gi|149230518|gb|EDM35902.1| integrase [Pedobacter sp. BAL39] Length = 294 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 44/280 (15%), Positives = 81/280 (28%), Gaps = 27/280 (9%) Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSGVES 125 T+ ++ Y K + ++ S+E+ Q D +R + Sbjct: 1 MTIAEFLT-YLKHE--KRYSPHTIQSYETDLLQFEAYLSDVYELALPDAGRAQVRDYMVW 57 Query: 126 RKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 S + L+++R +K V +A +P V PK + Q Sbjct: 58 LMERQIAERSVARKLSALRSFYKHLVAGGAIASSPMALVRAPKVPNRLPVFVEDHKLDQL 117 Query: 183 KSFWSE------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITV 235 + +L E L +G+R S+ +Q + K + Sbjct: 118 LDSTEIFNDSFSSVRDKLVIEMLFGTGMRVSELVNVKLQDVDFYASSVKVLGKRNKERII 177 Query: 236 EL---------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA--GVNK 284 + K L E F+ N + + T K Sbjct: 178 PIGKTLTSLLKVYIDTKTLQDFNNKTEYLFVTNKGAAVTRGFIYKIVTSYLTYVSTQDKK 237 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 S H +R AT + GA + + G ++ + YT Sbjct: 238 SPHVLRHSYATSLLNRGADLNAIKELLGHASLAATQVYTH 277 >gi|325297661|ref|YP_004257578.1| integrase family protein [Bacteroides salanitronis DSM 18170] gi|324317214|gb|ADY35105.1| integrase family protein [Bacteroides salanitronis DSM 18170] Length = 432 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 52/376 (13%), Positives = 110/376 (29%), Gaps = 37/376 (9%) Query: 2 TPSLRLPPFVTKERTRHGKIIYY---FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKR 58 ++ P + + G Y +R G L + Sbjct: 61 PKKVKEPVRLRMKDLSDGSKSLYLDIYRNGKRTYEYLKMYLIPETDENARRRNKATMNAA 120 Query: 59 EYINSPRKKPTT--------------LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR 104 I S R T L + Y+++ + I Sbjct: 121 NAIKSKRIIEMTNGEAGIENEKEKVFLLDWMQTYKENQEKRGKKD--ENQIKVAIRIIED 178 Query: 105 KSGDF-DYRKITTKHIRSGVES--RKHTPS-------SAIQFLTSMRVLFKWAVRQEYVA 154 +G +I + ++ ++ P + + + AVR E + Sbjct: 179 YAGKKVTLDQIDKAFCQGYIDYLMMEYRPRGKRVSNFTLKNYYRVLNSALNAAVRAELMR 238 Query: 155 INPCLSVER---PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCR 211 NP +++ + T E+++ + + + + A+ F + GLR SD R Sbjct: 239 SNPFDKIDKSDKIRLPESKRSYMTIEEVKALIATPMKYEEIKCAYLFSCFCGLRISDVKR 298 Query: 212 AGVQHLQNNIFSIKTQKTGTIITVELPDG-FMKLLAMTPIGKETFFINNDKQKMNATQFS 270 + + + + + + + L P + + + + + Sbjct: 299 LQWKDVFIDKGQYRLAVSMKKTKEPIYLPLSSEALKWMPERGDKTPDDLVFDLPSGNEIN 358 Query: 271 IWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 K A AG+NK S H R AT+ GA + G V + Y K ++ Sbjct: 359 RLLKPWAKAAGINKRFSFHTSRHTFATMMLTLGADLYTTSKLLGHADVKMTQVYAKIINK 418 Query: 329 IRLGIKNSRRISSVVD 344 + + ++ + D Sbjct: 419 KK--DEAVNLVNGLFD 432 >gi|221065123|ref|ZP_03541228.1| integrase family protein [Comamonas testosteroni KF-1] gi|220710146|gb|EED65514.1| integrase family protein [Comamonas testosteroni KF-1] Length = 348 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 48/322 (14%), Positives = 96/322 (29%), Gaps = 45/322 (13%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQI--IRKSGDFDYRKITTKHIRSGVESRK 127 L ++ Y + LA + + ++ + ++ D + + HIR Sbjct: 16 LPEVVHSYLEHVRVQKRLADRTHTLYALDLIKLQSLAQAADQELLTLQPAHIRRFAAQMH 75 Query: 128 HTPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED------ 178 SA L+ R F+WA ++E V NP V PK + +D Sbjct: 76 SAGRSARGIALILSGWRSFFRWAAQRELVPFNPVEGVRGPKAAKPLPKALAVDDAVQLAS 135 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--------- 229 Q + ++ E L GLR ++ ++ Q ++ + Sbjct: 136 FQIPDADPWIEARDVAMTELLYSCGLRVAELVGLDLRPDQQSLQQGRGWIDLEAGDAHVQ 195 Query: 230 ---GTIITVELPDGFMKLLAMT---------------PIGKETFFINNDKQKMNATQFSI 271 V + ++ L + FI +++ Sbjct: 196 GKGSKRRIVPVGRMAIEALQRWLALRSSALTGAAQFKAQDETALFIGRRGERLGGHSVWS 255 Query: 272 WFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 K + +AG+ H +R A+ + + G ++ + YT+ D Sbjct: 256 RLKQRGQRAGLASGVHPHVLRHSFASHMLQSSGDLRAVQELLGHASIATTQIYTR-LDFQ 314 Query: 330 RLGI---KNSRRISSVVDSDDP 348 L K R ++ P Sbjct: 315 HLAQAYEKAHPRAQRSSAAEKP 336 >gi|320105374|ref|YP_004180964.1| integrase family protein [Terriglobus saanensis SP1PR4] gi|319923895|gb|ADV80970.1| integrase family protein [Terriglobus saanensis SP1PR4] Length = 394 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 58/365 (15%), Positives = 114/365 (31%), Gaps = 39/365 (10%) Query: 11 VTKERTRHGKIIYYFRKGHG--------RRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62 +T+E+ ++G ++ +R R+ + + A + G I Sbjct: 13 LTREKRQNGSDVWVYRWRENGSSGQRINRKRIVGTVADLRSKAAAQKLVEGLRLDINAIV 72 Query: 63 SPRKKPTTLKWLISEYRKS--AHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHI 119 T+ LI+ Y ++ A + +R + + ++I + G + + + T I Sbjct: 73 QTAPHSYTVAELITHYLETELAEKANKTALTRKVYRYHLEKIILPVWGKYRLQDVRTVAI 132 Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 +ESR PSS + LF+ +R E+V NP V + ++ T+ ++ Sbjct: 133 ERWLESRPGAPSSKAKTRNIFSTLFRHGMRYEWVFSNPIELVRQGAKRLVEPDILTEAEI 192 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-----------QK 228 + R +GLR + Q + +I+ K Sbjct: 193 RTLIE--GLDEPARTMVLVAAVTGLRRGELFGLRWQDVDFQGLTIRIACSLVDQVEGAPK 250 Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF-----------SIWFKAKA 277 T T T + F +D + A Sbjct: 251 TVTSRTSIPLSPELARALGEWKRTTHFTGESDWVFSSPASLGKQPYWPGMILRRHIAPAA 310 Query: 278 TKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGA-DRIRLGI 333 + G+NK H R+ +AT+ AGA+ + Y + + R Sbjct: 311 QRLGINKKIGWHTFRRTTATLLFSAGASVKTTQELMRHASPSITLGLYAQAVTEDKRAAH 370 Query: 334 KNSRR 338 + Sbjct: 371 NALSK 375 >gi|325002510|ref|ZP_08123622.1| site-specific tyrosine recombinase XerD [Pseudonocardia sp. P1] Length = 307 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 51/285 (17%), Positives = 88/285 (30%), Gaps = 31/285 (10%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS--------G 122 + ++ +Y A N+ S+ D+ + D + Sbjct: 5 ERVVEDYLGHLAVERGRAQNTLRSYRLDLDRYVAHLADAGIDDLGRVRETDVAGFVTALR 64 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 R SSA + L ++R L ++AV + V + V P + T + + Q Sbjct: 65 TGERPLAASSAARALAAVRGLHRFAVLEGTVPADVAAGVAPPSLPSRLPTALTVDQVDQL 124 Query: 183 KSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVEL 237 + G + R E L +G R S+ A + L +I K V + Sbjct: 125 LAGCVADGPTGLRDRALLELLYSTGGRISEIVGADLDDLDPGARTILLHGKGDKQRIVPV 184 Query: 238 PDGFMKL-----------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--- 283 + LA G +N +M+ +A A +G+ Sbjct: 185 GRPALAAVDAYRVRARPDLAGRGTGSPALLLNARGGRMSRQSAWHALRAAAEASGLGPAV 244 Query: 284 ---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 S H +R AT GA + G +V + YT Sbjct: 245 VAAVSPHTLRHCFATHLLSGGADVRVVQELLGHASVATTQIYTHV 289 >gi|300088762|ref|YP_003759284.1| integrase family protein [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528495|gb|ADJ26963.1| integrase family protein [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 304 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 38/292 (13%), Positives = 88/292 (30%), Gaps = 30/292 (10%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD------------YRKITTKHIRSGV 123 + + + ++ + R +G+ ++ + Sbjct: 15 EAFCARLSAEGRSPATISAYRRDLALVARVAGELTPGIVCRAVTAGLLDQVFSAGAVIES 74 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + +S + ++R F WA V NP S+ + + T + ++ Sbjct: 75 VRGPRSAASLHRMKAAVRAFFAWASEAGVVDDNPARSIRMHRLPRKLPVFLTAAEKKRLL 134 Query: 184 -----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 + R E LL +G+R + + + + ++ + G + V Sbjct: 135 KELKGRTDFFALRDRAMIEVLLGTGIRLGELAALDMDDIDLDAKHLRVRAKGNVPQVNFI 194 Query: 239 DGFMKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWFKAKATKAGVNK--SAH 287 ++ L + + + + ++ Q + KAG+ K + H Sbjct: 195 KTDLRTLLRRYLAERRRHGRPEMEALFLSNRDGRLCQRQIANRLAHWLRKAGIEKELTPH 254 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 G+R AT A + G + V + YT D + R+ Sbjct: 255 GLRHTFATHLYGATNDLLVVQRALGHRDVSTTQIYTHLVDGQ--LEEALERL 304 >gi|196232913|ref|ZP_03131763.1| integrase family protein [Chthoniobacter flavus Ellin428] gi|196223112|gb|EDY17632.1| integrase family protein [Chthoniobacter flavus Ellin428] Length = 298 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 89/289 (30%), Gaps = 23/289 (7%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG---VESRK 127 ++ + + + I++ + + ++++T H R R Sbjct: 7 DRFADDFFTFLEVERNASPRTLINYRHALAEFRQVPNLPAWKELTADHFRRYLFECSKRG 66 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 + ++R +K+ + + NP V+ PK + + T + + + S Sbjct: 67 IARPTIRLHFAALRTFYKFLTERHGLKENPLKEVQLPKLEKKLPLVLTTKQIDELLSAPL 126 Query: 187 ----------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITV 235 ++ E SGLR ++ V ++ S++ K V Sbjct: 127 RIEKSAKAPVWMPARDAAILELFYSSGLRLAELVALDVANVDIYSESVRVLGKGRKERVV 186 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNAT----QFSIWFKAKA--TKAGVNKSAHGV 289 + + + K+ + + T + S H + Sbjct: 187 PVGAPALTAIQKYRQEANVHAGPLFLSKVRRRLTAANVWLVIRRYLPHTSIPLKVSPHKL 246 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKNSR 337 R AT DAGA + + G ++ + YT +R++ + Sbjct: 247 RHSFATHLLDAGADLRSVQSLLGHASLSTTQIYTHVTIERLKTAYDEAH 295 >gi|37677230|ref|NP_937626.1| putative integrase [Vibrio vulnificus YJ016] gi|37201775|dbj|BAC97596.1| putative integrase [Vibrio vulnificus YJ016] Length = 296 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 38/286 (13%), Positives = 88/286 (30%), Gaps = 19/286 (6%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KH 128 L ++ + ++ +I D +T + +R + Sbjct: 9 FDDLYQQHLTQLKLQGKRAKTISAYSLAVRRITEYF-DRCPDTLTIEDLRRYFSQLIGQV 67 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + S+ ++ +K + +++ + + +P + + E + Q + E Sbjct: 68 SWSTIKLDRCGLQFFYKHTLNKQW----EWIGIIKPPKVKRLPNIISPEQVAQIINTTRE 123 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLA 246 + R+ F L GLR +++ + + N I+ K G V LP + L Sbjct: 124 -PRYRVLFLTLYTMGLRINEALNLTISDIDSHNMQVHIRYGKGGKDRLVPLPHRTLHALR 182 Query: 247 MTPIGKETFF------INNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298 N K + G++K + H +R AT Sbjct: 183 RYWCTHRHPKLLFPSKGKCCDVAFNDQGAQKALKQVVHECGIHKRITPHSLRHCFATHLL 242 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRI-RLGIKNSRRISSVV 343 + G L G +++ YT+ + +++ + Sbjct: 243 EQGLDLRSLQILLGHASLNTTARYTQLTQLKLHDANQALNQLADRL 288 >gi|21283668|ref|NP_646756.1| integrase [Staphylococcus aureus subsp. aureus MW2] gi|300912911|ref|ZP_07130349.1| integrase [Staphylococcus aureus subsp. aureus TCH70] gi|21205109|dbj|BAB95804.1| integrase [Staphylococcus aureus subsp. aureus MW2] gi|300885689|gb|EFK80896.1| integrase [Staphylococcus aureus subsp. aureus TCH70] Length = 345 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 44/328 (13%), Positives = 98/328 (29%), Gaps = 22/328 (6%) Query: 19 GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS-PRKKPTTLKWLISE 77 GK Y K G+R R + G E + TL+ Sbjct: 8 GKKWQYEFKHEGKRYRKKGFRTK-----REANYAGLDKLNELRSGFNIDNYITLEEYFEN 62 Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVES--RKHTPSSAI 134 + K+ + N+ + + I + G + KI + + + ++H + Sbjct: 63 WIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDYSKEHAKETIR 122 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVER----PKRKTEGIRPWTKEDMQQFKSFWSEGS 190 + ++R A+ ++ NP V P + + E + + Sbjct: 123 KTNGAIRSALDDALYDGFIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEILKDHVRKKRT 182 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-------KTGTIITVELPDGFMK 243 + LA ++ +G R S + +H+ +I I M Sbjct: 183 RSSLALFIMICTGCRVSGARNIKTEHINQVKNTIFIDERKTDTSPRYISIAKSDMKHIMD 242 Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGA 302 +++ I + + +N + K+ + ++H +R + G Sbjct: 243 VISTFAISYDGYIFKEAGSIINLQAINNALKSACRVNNIPIITSHALRHTHCSYLLAKGV 302 Query: 303 TAHELMATYGWKTVD-QAETYTKGADRI 329 + H + G K + Y+ + Sbjct: 303 SIHYISKRLGHKNIAITTSVYSHLLEEK 330 >gi|284037946|ref|YP_003387876.1| integrase family protein [Spirosoma linguale DSM 74] gi|283817239|gb|ADB39077.1| integrase family protein [Spirosoma linguale DSM 74] Length = 390 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 34/277 (12%), Positives = 98/277 (35%), Gaps = 23/277 (8%) Query: 80 KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQ 135 + G+ + + +++ +IR +G ++T ++ E ++ + ++ Sbjct: 123 NALQIGNYSYRTLKNYKQALIALIRYAGSIPLDELTRAQYQAYLLFLTEKKRLSSATINV 182 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195 + + +K+ + ++ P++ T+ ++ ++++ + + R Sbjct: 183 HINA----YKFYQEKVLQRDKLYFDIDYPRQPTKLPTVYSVDEVRAIIKATT-SLKYRTL 237 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDG----FMKLLAMTP 249 F + +GLR S++ + L + +++ K V L + L Sbjct: 238 FRLIYSTGLRLSEAAHLHLVDLDRDRRLITVRAGKGKKDRVVMLSEKLDLDINTYLNQYR 297 Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHEL 307 + F + ++ ++ + AG+ K H +R AT ++G + Sbjct: 298 PHRYLFEDASTREPISIRTIQQVYSNTVRFAGIVKRGGIHSLRHSFATHLLESGVDIRHI 357 Query: 308 MATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 G +++ YT ++ S +D Sbjct: 358 QELLGHESILTTMRYTHVT------ADKISKLRSPLD 388 >gi|224543618|ref|ZP_03684157.1| hypothetical protein CATMIT_02828 [Catenibacterium mitsuokai DSM 15897] gi|224523444|gb|EEF92549.1| hypothetical protein CATMIT_02828 [Catenibacterium mitsuokai DSM 15897] Length = 340 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 32/263 (12%), Positives = 82/263 (31%), Gaps = 14/263 (5%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK----H 128 LI ++ S + + ++S ++ D + +TT H+R+ + + Sbjct: 64 ELIDKFIASKEIEGCSKRTTQYYKSTL-VMLENRTDIHFTHMTTDHLRTYLTDYQKINNC 122 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + S ++ F W + Y+ +P + + K + E ++ + Sbjct: 123 SKVSIDNIRRNLSSFFSWLEEENYILKSPMKRIHKIKTDKVIKETLSDESLEC-LRDSCD 181 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAM 247 + + L +G+R + ++ + V L Sbjct: 182 NLRDLAIIDLLASTGMRVGELVNINIEDIDFENRECVVFGKGNKERPVYFDARTKIHLKN 241 Query: 248 TPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300 + + ++ + I + + G+++ H R+ AT + D Sbjct: 242 YLKSRTDDNPALFVSLDKPFNRLQISGVEIRLRNLGRRLGIHRVHPHKFRRTVATRAIDK 301 Query: 301 GATAHELMATYGWKTVDQAETYT 323 G ++ + G +D Y Sbjct: 302 GMPIEQVQSLLGHSQIDTTMHYA 324 >gi|194716540|gb|ACF93205.1| putative transposase [Sphingobacterium sp. PM2-P1-29] Length = 279 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 35/262 (13%), Positives = 86/262 (32%), Gaps = 9/262 (3%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-YRKITTKHIRSGVESRKHTPSS 132 ++ + K A N+ S++ Y ++ + +I I + + + Sbjct: 6 ILETFEKRLLMQRYAGNTIRSYKDYASIFLKHVSKYPSLEEIPLSDIEAFINEKVQNGKI 65 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 ++ + + K + + ++ + ++KE+++ + Sbjct: 66 SVSYQKGLVGAIKKMYELILDKKIQLDYLYPKRSFSKLPKFFSKEEVRNILDNTQ-NLKH 124 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--GTIITVELPDGFMKLLAMTPI 250 + + GLR S+ ++ ++++ I+ ++ V LPD + L Sbjct: 125 KAILMTIYSCGLRLSELLNLKIKDIKSSDGIIRIHQSKGNKDRIVSLPDKLLATLRHYYQ 184 Query: 251 GKETFFINNDKQK---MNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305 + + +K + + K KA V S H +R AT +G Sbjct: 185 AFKPKEYLFEGEKGGKYSERSVQLILKKALIKANVQSEGSVHTLRHSYATHLIQSGIDIR 244 Query: 306 ELMATYGWKTVDQAETYTKGAD 327 + G + + YT D Sbjct: 245 IVKELLGHENIKTTMIYTHITD 266 >gi|260885407|ref|ZP_05896922.1| integrase/recombinase XerC [Prevotella tannerae ATCC 51259] gi|260852293|gb|EEX72162.1| integrase/recombinase XerC [Prevotella tannerae ATCC 51259] Length = 299 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 31/284 (10%), Positives = 78/284 (27%), Gaps = 24/284 (8%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESR 126 K L + + + + + + ++ I +R + R Sbjct: 6 KALTQRFLSYLASDKGYSPLTIMKYRDVLEGFEAFYISQEATLTWQTIDADLVRRWIVWR 65 Query: 127 KHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-----WTKED 178 + + L+++R +++ + + +P V+ PK + Sbjct: 66 MDDGIVGRTVRRDLSALRSFYRYLLVLGLIEKDPMCFVKNPKSAQPLPAFVRQSEMDRLF 125 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KTGTIITVEL 237 + EG + L +G+R ++ + + ++ K + Sbjct: 126 DKTHFPETFEGQRDYLILLTFYSTGVRRAELLAMQWVDIDLSRCEVRVTGKRNKQRIIPF 185 Query: 238 PDGFMKLLAMTPIGKETFFINN--------DKQKMNATQFSIWFKAKATKA-GVNK-SAH 287 + + + + + + TQ + + K S H Sbjct: 186 GAELAEAFQAYYAARMDLVKHMSGPLFIQSNGRPLQPTQVGRIVHDYLSLVTNIKKRSPH 245 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +R AT + GA + G ++ YT L Sbjct: 246 VLRHSFATAMLNNGADLMAVKELLGHSNLNTTAIYTHVTPEELL 289 >gi|116492336|ref|YP_804071.1| integrase [Pediococcus pentosaceus ATCC 25745] gi|116102486|gb|ABJ67629.1| Integrase [Pediococcus pentosaceus ATCC 25745] Length = 384 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 62/387 (16%), Positives = 121/387 (31%), Gaps = 57/387 (14%) Query: 11 VTKERTRHGKIIYYFR--------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62 + K T+ GKI Y F+ G + R +S L KR Sbjct: 4 IKKYTTKTGKIRYEFQVYAGVDSLTGRQKTTRRRGFKTRKEASIVLSRLELEIEKRGLQE 63 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRS 121 R+ + + +E+ + + ++ + + ++ GD IT + Sbjct: 64 DERRF---FRDVCAEWMEQYRLT-VRESTLEKTQRIINIHVLPAFGDMVINNITPNVCQK 119 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 V S ++L ++F +A+R EYV NPC V P+ + + + Sbjct: 120 VVNKWFLEAKSYKKWLNYASMIFDYALRAEYVGRNPCTLVTMPRVQEQAGEKLENFWTRD 179 Query: 182 FKSFWS------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---- 231 + + + F L YSG+R + + + +++ KT T Sbjct: 180 ELNTFFDYVTPERDVEQFTMFRVLAYSGIRKGELLALTWKDINFEDNTLRVNKTLTQGLG 239 Query: 232 -------------IITVELPDGFMKLLAMTPIGKETFFINN---------------DKQK 263 T++L D M+ L + F+ Sbjct: 240 GKLIVQPPKSRAGRRTIDLDDSTMRYLRQWKGVQRETFLGMGFNTNNVDQLVFASNRNHF 299 Query: 264 MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWK---TVDQA 319 + + W G+ S HG R A++ +G E G + Sbjct: 300 RSMNTPTKWLNKAIKATGLKHISIHGFRHTHASLLYQSGVGLKETQQRLGHSRADSSVTL 359 Query: 320 ETYTKGADRIRLGIKNSRRISSVVDSD 346 + YT ++ + +R + V++ Sbjct: 360 DVYTHTTEQQNVA--ALQRFENYVEAK 384 >gi|331086445|ref|ZP_08335525.1| hypothetical protein HMPREF0987_01828 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406211|gb|EGG85734.1| hypothetical protein HMPREF0987_01828 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 353 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 54/358 (15%), Positives = 110/358 (30%), Gaps = 35/358 (9%) Query: 16 TRHGKII---YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 TR GK +Y+ G R + T A + + + Sbjct: 4 TRDGKTWRSQFYYEDWQGIRHKKNKRGFKTKAEAE------EWERNFRQQQRKDLDINFE 57 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR---KH 128 + Y L ++ + FD ++ +I T IR+ + Sbjct: 58 NFVEIYFADVENR-LRESTIKNKRYVFDLKVTPYFKKKKMCEIKTSDIRAWQNELIKQGY 116 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDMQQFKSFWS 187 P+ + LF +AVR + NPC + + + WTK++ +QF Sbjct: 117 APTYLKSINNQLAALFNYAVRYYDLKDNPCRKAGSIGKSKADDMEFWTKQEFKQFLPSMD 176 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--------------- 232 + + R+AF L ++G+R + + + I K+ Sbjct: 177 KKPEARMAFMLLYWTGMRIGELLALTYEDIDLEKRIISISKSYQRLDGKDVITPPKTPKS 236 Query: 233 -ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVR 290 + +P + L N + + + GV + H +R Sbjct: 237 NRKITIPPFLAEELKEYCSHLYGIMSNERMFRFTKSYMEHEIVRGIKETGVKRIRIHDLR 296 Query: 291 KFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVDSDD 347 A++ + G + G + ++ TY+ + + + R+ + DD Sbjct: 297 HSHASLLVELGFQPLAIAERLGHEKIETTLNTYSHLYPNKQ--AELADRLELENEEDD 352 >gi|111224556|ref|YP_715350.1| site-specific tyrosine recombinase [Frankia alni ACN14a] gi|111152088|emb|CAJ63815.1| site-specific tyrosine recombinase (partial match) [Frankia alni ACN14a] Length = 349 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 50/318 (15%), Positives = 100/318 (31%), Gaps = 53/318 (16%) Query: 66 KKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRS 121 + T +I+ Y LA NS +++ + + G + + Sbjct: 3 SQRGTPGNVIARYLHHLEGERGLAQNSVLAYRRDLRRYLNHLSAQGLCSLDAVGEAEVAG 62 Query: 122 GVESRKHT--------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 + + +S + L ++R L ++A + V+ + V P + + Sbjct: 63 FAAALRLGDETHPPLAAASVARMLVAVRSLHRFAAEEGDVSEDVSRPVRPPTPPRKLPKA 122 Query: 174 WTKEDMQQFKSFWSEGSQPRLAF----------------------------EFLLYSGLR 205 + + + + + + +A E L +G R Sbjct: 123 LSVDQVTAVLAAAAGTPRAGVAGVAGRAEDLAAAPVEPAEAVRRLRATALLELLYGTGAR 182 Query: 206 CSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMT----------PIGKET 254 S++ V L +++ K G V L + L P Sbjct: 183 ISEAVGLDVDDLDLESAAVRLHGKGGRDRIVPLGRCAVAALGDYLRLGRPSLAGPRSGAA 242 Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGW 313 F++ +++ + A +AGV+ S H +R AT D GA + G Sbjct: 243 VFLSRRGNRLSRQSAWTVLRTAADQAGVDGVSPHVLRHSFATHLLDGGADVRVVQELLGH 302 Query: 314 KTVDQAETYT-KGADRIR 330 +V + YT DR+R Sbjct: 303 ASVSTTQIYTLVTVDRLR 320 >gi|306833437|ref|ZP_07466564.1| phage integrase [Streptococcus bovis ATCC 700338] gi|304424207|gb|EFM27346.1| phage integrase [Streptococcus bovis ATCC 700338] Length = 354 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 49/340 (14%), Positives = 113/340 (33%), Gaps = 38/340 (11%) Query: 13 KERTRHGKIIYYFRK----GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 ++ R GK + +R G+ ++ + ++ + ++ Sbjct: 4 EKDKRTGKWLIQYRYTDWQGNRKKSTKRGFNTKREAEEWLR--------QFLLSQSCDFN 55 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK 127 I Y K L N+ I+ + +I+ G+ +IT +IR Sbjct: 56 MKFSNFIDLYFKDCDAR-LKRNTIINKRYIINLKILPYFGNKKMNEITPANIREWQNIMI 114 Query: 128 HTPSSAIQFLTSMR----VLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDMQQF 182 S +L ++ +F AV+ + NPC V +K + ++ +TK++ + F Sbjct: 115 GKGYSQ-TYLKTINNQITTIFNHAVKLYGLQSNPCHKVGSMGKKKAKEMKFYTKDEFKLF 173 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------- 232 + + + F + ++G+R + V + +I K+ Sbjct: 174 INQLMDKRLSYVCFMVMYWTGIRVGELLALDVGDVDVKHKTISITKSYQRLEGEDVVTLP 233 Query: 233 ------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-S 285 +++PD + L + ++ A +AG+ K Sbjct: 234 KTDASNRVIDIPDFLAEDLKDYLDYLYMPEPTDRLFTVSKYYLRRKLARGAKQAGIKKIR 293 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 H +R A + + + G ++++ +TY Sbjct: 294 IHDMRHSHAALLINMDKPILAISRRLGHESIETTLDTYGH 333 >gi|158313594|ref|YP_001506102.1| integrase family protein [Frankia sp. EAN1pec] gi|158108999|gb|ABW11196.1| integrase family protein [Frankia sp. EAN1pec] Length = 383 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 48/293 (16%), Positives = 87/293 (29%), Gaps = 42/293 (14%) Query: 73 WLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKH 128 +I Y LA NS +++ + G + I + + Sbjct: 24 QVIERYLDHVDGERGLARNSVLAYRRDLRRYREHLAAGGITSLAAVGEAQIAEFAAALRE 83 Query: 129 T--------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 P+S + L ++R L ++A ++ V+ + V P R T + + Sbjct: 84 GDETHPPLAPASVARMLVAVRSLHRFAAQEGDVSEDVARPVRPPVPPRRLPRALTVDQVS 143 Query: 181 QFKSFWSEGSQPRL------------------AFEFLLYSGLRCSDSCRAGVQHLQNNIF 222 + G E L +G R S++ + L + Sbjct: 144 AVIAAAVAGGPEYAEVSGGDPAELARRLRSAALLELLYGTGARISEAVGLDLDDLDLDRS 203 Query: 223 SIK-TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK----------QKMNATQFSI 271 +++ K G V L + L + +++ Sbjct: 204 AVRLRGKGGRDRVVPLGRYAVTALERYLRRGRPHLVTECSGTAVFVSRRGNRLSRQSAWS 263 Query: 272 WFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 +A A AGV S H +R AT D GA + G +V + YT Sbjct: 264 ALRAAANAAGVPGASPHVLRHSFATHLLDGGADVRVVQELLGHASVSTTQIYT 316 >gi|157362896|ref|YP_001469663.1| phage integrase family protein [Thermotoga lettingae TMO] gi|157313500|gb|ABV32599.1| phage integrase family protein [Thermotoga lettingae TMO] Length = 276 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 36/260 (13%), Positives = 79/260 (30%), Gaps = 10/260 (3%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132 L+ + L+ + ++ S + + + + +I + + PS+ Sbjct: 6 DLLKRFEAVLRSQKLSSMTVRAYMSAVRKFTQSIEELNVEEILKW---AETTAEGRKPST 62 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERP--KRKTEGIRPWTKEDMQQFKSFWSEGS 190 + ++R + + + + L V+ + + + E Sbjct: 63 VNLYYCAIRRFLEEVSPEILLDLRNKLKVKGRSSTIPKALSEREFLKLWNKAVKIFDEDY 122 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKLLAMTP 249 + L Y+GLR S+ V H+ I K + V +P + Sbjct: 123 RQLLIVGLAGYAGLRVSEIRSLKVGHINLREDHILVNGKGRKMRIVPIPSKLKPYIFKIV 182 Query: 250 IGKETFFINNDK---QKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAH 305 + + + + S K A K G+ S H +R +AT G Sbjct: 183 PKLKEEEPLLKNLSGKPITSHGISYLLKNLAKKTGIKHISPHVLRHTAATNLLKKGVNLK 242 Query: 306 ELMATYGWKTVDQAETYTKG 325 + G ++ E Y + Sbjct: 243 IVQEFLGHSSLATTERYLRV 262 >gi|319649924|ref|ZP_08004074.1| phage integrase family domain-containing protein [Bacillus sp. 2_A_57_CT2] gi|317398362|gb|EFV79050.1| phage integrase family domain-containing protein [Bacillus sp. 2_A_57_CT2] Length = 304 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 31/281 (11%), Positives = 80/281 (28%), Gaps = 28/281 (9%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESY---FDQIIRKSGDFDYRKITTKHIRS---GVE 124 LK+ I ++ + ++ N+ S++ + + ++ + +++T HI+ + Sbjct: 2 LKFAIQDFLDDREFKNVTPNTLESYKLIIGQLNDFLTENEVVNVQEVTPNHIKKFILHYQ 61 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE--------RPKRKTEGIRPWTK 176 + + ++ L +R F + + E + NP ++ + Sbjct: 62 KKGNNATTTNSKLQRIRAFFNYMIECEIITQNPAKKIKKAKEDIKIDVFTDYHIKQMLNY 121 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 + + + L+ +G+R S+ + ++ Sbjct: 122 YRRIKQREKAFYAYRDHSIIVILIGTGIRLSEMTALKWSDVDFQNHTLSVFGKNRKRETM 181 Query: 237 LPDG-----------FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-- 283 + + E F N + + FK + Sbjct: 182 PITEKVVKELSAYKVYCEQFFGKENLHENIFTNRSSEPLTPDAVKNIFKRLSKIMNFKDV 241 Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 SAH R AG + + ++ E Y Sbjct: 242 RLSAHTFRHTFCQRCIHAGMSTFAVQRLMRHSSIAVTEKYA 282 >gi|258543858|ref|ZP_05704092.1| tyrosine recombinase XerC [Cardiobacterium hominis ATCC 15826] gi|258520898|gb|EEV89757.1| tyrosine recombinase XerC [Cardiobacterium hominis ATCC 15826] Length = 301 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 41/295 (13%), Positives = 96/295 (32%), Gaps = 23/295 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----KHT 129 I ++ + A + ++ Q D D + + +++ + K++ Sbjct: 4 IDDHLAYLRYERGKAAQTLATYRRLLYQFAEAHRDRDLHALEPRDLQNYLTKTLGGGKYS 63 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-GIRPWTKEDMQQFKSFWSE 188 P++ Q ++R ++W R + +P +++ P++ + T E + + Sbjct: 64 PATLNQHRAALRSYYRWLHRLRGLPTDPAAALKLPRQARQPLPDALTPEQITTLLEAPAT 123 Query: 189 GS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMK 243 + + E +GLR ++ + L + + G + + + Sbjct: 124 DNPNLIRDHTILELFYSAGLRLAELASLDNRDLGPDSEHHIIRGKGGVERLIFIGSKARE 183 Query: 244 LLAMTPIGKETF---------FINNDKQKMNATQFSIWFKAKA--TKAGVNKSAHGVRKF 292 LA + F+N + ++ ++ KA A GVN H +R Sbjct: 184 ALARWQTVRGQLLKKADEPALFLNKNGGRLTERGIALRLKAYAAERLPGVNVHPHMLRHT 243 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347 A+ + + G K + + YT D L + D Sbjct: 244 FASHILQSSGDLRSVQELLGHKNLATTQIYTH-LDYQHLARTYDEKHPRAKKKRD 297 >gi|187930268|ref|YP_001900755.1| integrase family protein [Ralstonia pickettii 12J] gi|187727158|gb|ACD28323.1| integrase family protein [Ralstonia pickettii 12J] Length = 351 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 48/347 (13%), Positives = 106/347 (30%), Gaps = 25/347 (7%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 +T G RK + + Y++ + T+ Sbjct: 6 KTPSGTWKAVIRKLGWP-TTAKTFRTKRDAEDWARRTEDEMVRGVYLSRAPSEKLTVAGA 64 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134 + Y + ++ S + G + ++ + ++R S Sbjct: 65 LKRYMEEVSVTK-KPTTQRSERFTAQHLEAFFGKYSMAAVSADLVAKYRDARLAAGKSNN 123 Query: 135 QF---LTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 L + LF+ A+++ + NP ++ +P R + ++ + + S Sbjct: 124 TVRIELAMLGHLFRTAIQEWSIGLTFNPVANIRKPSPGAGRDRRLSLDEQARLFAAVSAH 183 Query: 190 SQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVELPDGFMKLL 245 S P L + L +G+R S+ + N + + K G+ V L +L Sbjct: 184 SNPMLGWIVSLAVETGMRSSEIATLRRSQVDLNRRVVTLRDTKNGSARVVPLTRAAADVL 243 Query: 246 A--------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATI 296 F K F + + G+ + H +R + + Sbjct: 244 QLALGNPIRPLDSDLVFFGEPGRDGKRRPYVFQKLWASIVRDMGLADLHFHDLRHEAVSR 303 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343 +AG + E+ A G K++ + YT ++ +V+ Sbjct: 304 LVEAGLSDQEVAAISGHKSMQMLKRYTHL-----RAEDLVEKLDAVI 345 >gi|228939736|ref|ZP_04102317.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228972599|ref|ZP_04133203.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228979206|ref|ZP_04139549.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis Bt407] gi|228780563|gb|EEM28787.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis Bt407] gi|228787140|gb|EEM35115.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228819968|gb|EEM66012.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326940330|gb|AEA16226.1| DNA integration/recombination/inversion protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 369 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 48/366 (13%), Positives = 117/366 (31%), Gaps = 44/366 (12%) Query: 17 RHGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + G G+R + + T A + + + TL Sbjct: 7 KRGNKYCIVIDIGPDPETGKRRQKWFSGYKTKKEA-QADVAKKITELNEGTFIEPSKVTL 65 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 K ++ + + S+ ++ +++ + +I G K+ HI+ ++ Sbjct: 66 KDYLNHWLE-IKSMSIEKSTFAVYKAVINQHVIPSIGMVALHKLNVIHIQKCYKTAIDKG 124 Query: 131 SSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + L ++ AV+Q ++ NP E PK++ I+ WT+E++++F + Sbjct: 125 IANNSILLMHRILKSALNLAVKQNIISRNPAEFAEIPKKEKTPIQTWTEEEVKKFLAHSQ 184 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--------------TGTII 233 E S+ + + + +G+R + Q + ++ + + Sbjct: 185 E-SRYHIGYLLAITTGMRLGEVLGLRWQDIDFEKHTVTINQTSGHDNKIKKTAKTNSSKR 243 Query: 234 TVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKAKATK 279 T+ +P+ + L + ++ N + + F F K Sbjct: 244 TIPVPNETIAALKKHKILINKEKLRFGSAYLDQDLINCNEFGRIIKRAHFRKSFIRMTHK 303 Query: 280 AGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSR 337 G+ H +R AT+ G + G + Y+ + + + Sbjct: 304 VGIKEIKFHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLSVYSHVLPN--MQEEAVK 361 Query: 338 RISSVV 343 + Sbjct: 362 NFGKSI 367 >gi|170761057|ref|YP_001787301.1| phage integrase family site specific recombinase [Clostridium botulinum A3 str. Loch Maree] gi|169408046|gb|ACA56457.1| site-specific recombinase, phage integrase family [Clostridium botulinum A3 str. Loch Maree] Length = 357 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 45/341 (13%), Positives = 98/341 (28%), Gaps = 29/341 (8%) Query: 12 TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKR---EYINSPRKKP 68 +++ + ++I ++ +G+ + A +A + E + Sbjct: 7 YRKKDKGIQVIISYKV-NGKWKQKSKQGFKKKNDAKRAADKLLDDLKCNIENSLNTDYGN 65 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128 T K + + + S+ ++ D + KI T I++ V++ Sbjct: 66 ITFKDFTIMFLEHEILYK-EPGTIRSYRFALNRFKE-LNDLELTKINTMQIQTCVDNMIK 123 Query: 129 TP---SSAIQFLTSMRVLF-KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 T S+ +++ + +F +A NP ++ K K + + + Sbjct: 124 TGLASSTTKLYVSKLNTIFSNAIKPYNLIAKNPVDGIKILKSKKQEKIKALDKAKLKDLL 183 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------------ 232 + +A GLR + + ++ K Sbjct: 184 GKITYKKYYIASLIAATCGLRIGEVLGLTWADIDEINSTLTVNKQWKKLKSGNWGFGSVK 243 Query: 233 -----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAH 287 V + +K L T N ++ S + + G N S H Sbjct: 244 SKNSNRVVPISPNTLKELKNFKKNFVTDIHNRIIVCADSINLSRGLRDCYKRNGYNISIH 303 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKGAD 327 +R AT+ G G T++ Y D Sbjct: 304 DLRHTYATMLIGNGVDFKTAAKLLGH-TIEMTMKTYAHVND 343 >gi|206971545|ref|ZP_03232495.1| DNA integration/recombination/invertion protein [Bacillus cereus AH1134] gi|206733530|gb|EDZ50702.1| DNA integration/recombination/invertion protein [Bacillus cereus AH1134] Length = 369 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 46/366 (12%), Positives = 117/366 (31%), Gaps = 44/366 (12%) Query: 17 RHGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + G G+R + + T A + + + TL Sbjct: 7 KRGNKYCIVIDIGPDPETGKRRQKWFSGYKTKKEA-QADVAKKITELNEGTFIEPSKVTL 65 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 K ++ + + S+ ++ ++++ + +I G K+ HI+ ++ Sbjct: 66 KDYLNHWLE-IKSMSIQKSTFAGYKAFINQHVIPSIGMVALHKLNVMHIQKCYKTAIDKG 124 Query: 131 SSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + L ++ A++Q ++ NP E PK++ I+ WT++++++F Sbjct: 125 ITNNSILLMHRILKSALNLAIKQNILSRNPAAFAEIPKKEKTPIQTWTEDEVKKFLLHSQ 184 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--------------TGTII 233 E S+ + + + +G+R + Q + ++ + + Sbjct: 185 E-SRYHIGYLLAITTGMRMGEVLGLRWQDVDFEKHTVTINQTSGHDNKIKKTAKTNSSKR 243 Query: 234 TVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKAKATK 279 T+ +P ++ L + ++ N + + F F K Sbjct: 244 TIPVPKETIESLKRHKILINKEKLRFGSAYLDQDLINCNEFGKIIKRAHFRKSFIRMTHK 303 Query: 280 AGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSR 337 G+ H +R AT+ G + G + Y+ + + + Sbjct: 304 VGIKEIKFHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLSVYSHVLPN--MQEEAVK 361 Query: 338 RISSVV 343 + Sbjct: 362 NFGKSI 367 >gi|199599691|ref|ZP_03213060.1| integrase [Lactobacillus rhamnosus HN001] gi|199589415|gb|EDY97552.1| integrase [Lactobacillus rhamnosus HN001] Length = 360 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 40/337 (11%), Positives = 93/337 (27%), Gaps = 29/337 (8%) Query: 17 RHGKIIYY---FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 + GK+ Y ++ G+ ++ A ++A + I + TL Sbjct: 6 KRGKVWQYEISYKDLDGKFKKIRKSGFPRKSDAELAA-SQVKSVYLDIKQYQAGAITLSE 64 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--SRKHTPS 131 + S+ + I +E+ I + G R +T + + ++ H P Sbjct: 65 YFERWIHLYKKNSVTEVTFIKYENTLSHIKQLFGGVLLRDLTRTLYQERLNIFAQNHAPR 124 Query: 132 SAIQFLTSMRV-LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 + F +R L + ++ + + R ++ +Q + Sbjct: 125 TVAAFHKQIRAALLDAVDERIIHLDPTRKAIISGRPISATKRALDYQEWRQLIQGLDTSN 184 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF------MKL 244 ++ +G+R ++ + I KT + Sbjct: 185 TEQMIIYIAAVTGMRYAEVLGLTKSDIDLTGGEISINKTWDYKYHTGFKKTKNTSSVRAV 244 Query: 245 LAMTPIGKETFFINNDKQKMNATQ--------------FSIWFKAKATKAGVNK-SAHGV 289 + T + + K G+ + + HG+ Sbjct: 245 VLDTASIMKLAKFLKLHAPETPQTPIFVSNGHSPVSAEINKILTKKLKSLGLPRITFHGL 304 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAE-TYTKG 325 R A+I G + + G + + TY Sbjct: 305 RHTHASILLYQGVSVLSVSKRLGHSNITTTQATYLHV 341 >gi|29028668|ref|NP_803356.1| integrase [Staphylococcus phage phi13] gi|88195912|ref|YP_500723.1| integrase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|156604018|ref|YP_001429963.1| integrase [Staphylococcus phage tp310-3] gi|258444472|ref|ZP_05692805.1| integrase [Staphylococcus aureus A8115] gi|18920592|gb|AAL82331.1| integrase [Staphylococcus phage phi13] gi|87203470|gb|ABD31280.1| integrase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|154818104|gb|ABS87530.1| integrase [Staphylococcus phage tp310-3] gi|257850363|gb|EEV74312.1| integrase [Staphylococcus aureus A8115] gi|329724941|gb|EGG61443.1| site-specific recombinase, phage integrase family [Staphylococcus aureus subsp. aureus 21189] Length = 345 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 45/329 (13%), Positives = 98/329 (29%), Gaps = 24/329 (7%) Query: 19 GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP--RKKPTTLKWLIS 76 GK Y K G+R R A + K + S TL Sbjct: 8 GKKWQYEFKHEGKRYRKKGFRTK------REANSAGLDKLNELRSGFNIDNYITLAEYFE 61 Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVES--RKHTPSSA 133 + K+ + N+ + + I + G + KI + + + ++H + Sbjct: 62 NWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDYSKEHAKETI 121 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVER----PKRKTEGIRPWTKEDMQQFKSFWSEG 189 + ++R A+ + NP V P + + E + Sbjct: 122 RKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEILKDHVRKKR 181 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-------KTGTIITVELPDGFM 242 ++ LA ++ +G R S + ++H+ +I I M Sbjct: 182 TRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTDTSPRYISIAKSDMKHIM 241 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301 +++ I + + +N + K+ + ++H +R + G Sbjct: 242 DVISTFAISYDGYIFKEAGSIINLQAINNALKSACRVNNIPIITSHALRHTHCSYLLAKG 301 Query: 302 ATAHELMATYGWKTVD-QAETYTKGADRI 329 + H + G K + Y+ + Sbjct: 302 VSIHYISKRLGHKNIAITTSVYSHLLEEK 330 >gi|256845938|ref|ZP_05551396.1| phage integrase [Fusobacterium sp. 3_1_36A2] gi|256719497|gb|EEU33052.1| phage integrase [Fusobacterium sp. 3_1_36A2] Length = 351 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 45/343 (13%), Positives = 90/343 (26%), Gaps = 36/343 (10%) Query: 7 LPPFVTKERTRHGKI---IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63 +P + + + GK YY + RR + + AL Sbjct: 5 MPAY---KDDKTGKWEALFYYTDYKNERRKKHRRGFNTK-----REALEFEREFLTQSQF 56 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG 122 T K L S Y + + + E + +I+ + I HIR Sbjct: 57 SI--EMTFKSLYSLYHNDMKSR-IKKTTMETKEYIVNTKILPFFEKMKVKDIKPIHIRKW 113 Query: 123 VE---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 +++ + + +F +A+R + NPC +K Sbjct: 114 QTDLLKMEYSKTYLKTIYNQLTAIFNYAIRFHNLDKNPCHIAGSIGKKDADEMQILSLQE 173 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-------- 231 + + + L ++G+R + + + +I K Sbjct: 174 FNKMIDCVTDKENKFFYIILFWTGMRKGELLALTYEDVDFENKTITINKNFQIVKKERLI 233 Query: 232 --------IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 + + D + + + ++ KAGV Sbjct: 234 TDPKTPRGRRVIAVNDVVLNCIKDLWNTSYKPNKTDKIFYLSKDSLKRQLDTACKKAGVP 293 Query: 284 K-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 + H +R A+ G L G + V Y Sbjct: 294 RIRVHDLRHSHASYLLSNGVNIVILSRRLGHEKVQTTLNIYCH 336 >gi|89902211|ref|YP_524682.1| phage integrase [Rhodoferax ferrireducens T118] gi|89346948|gb|ABD71151.1| phage integrase [Rhodoferax ferrireducens T118] Length = 337 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 39/301 (12%), Positives = 89/301 (29%), Gaps = 42/301 (13%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHT 129 L+ Y + LA + + ++ +++ + ++ HIR V Sbjct: 20 DLVERYLEHVRVEKRLAQRTVELYALDLQKLSQQAAQAGVELLQVQNSHIRRWVAQMNAG 79 Query: 130 PSS---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED------MQ 180 S L+ R + W R+ ++ NP V PK + + + Sbjct: 80 GRSGRGIALILSGWRGFYVWLGREGLISSNPVQDVRAPKAGKPLPKALSVDQAVQLASFA 139 Query: 181 QFKSFWSEGSQPRLAFEFLL--------YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 + ++ E L +GL S A + K G Sbjct: 140 SGSNDPWLEARDAAMVELLYGAGLRVGELTGLDTVASSSARGWIDLQGGEAHVLGKGGKR 199 Query: 233 ITVELPDGFMKLLAMTPIGKETF-------------------FINNDKQKMNATQFSIWF 273 +V + + + ++ F+ + +++A Sbjct: 200 RSVPVGAKAVLAITHWLALRDQALAQAKPGLQGPGGNAQAALFMGRNGTRLSAQSIWQRL 259 Query: 274 KAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 + ++ +AG+ H +R A+ + + + G ++ + YT+ D L Sbjct: 260 RQRSLQAGLTTPVHPHMLRHSFASHLLQSSSDLRAVQELLGHASITTTQAYTR-LDFQHL 318 Query: 332 G 332 Sbjct: 319 A 319 >gi|328907661|gb|EGG27425.1| site-specific tyrosine recombinase XerC [Propionibacterium sp. P08] Length = 310 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 40/291 (13%), Positives = 94/291 (32%), Gaps = 28/291 (9%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGVESRK---H 128 + ++ + N+ + + + GD KI T +R+ + + Sbjct: 17 VEDFCDHLSALRRSPNTIRGYRADLIDFMGHAHSHGDDALGKIGTSQVRAWLADTRLAGA 76 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---- 184 +P++ + ++ RV F+WA + + +P ++ + + Sbjct: 77 SPATMQRRWSAARVFFRWAANEGLIDCDPTAALTSANVPKRLPATLGVDQARHILDGAVA 136 Query: 185 -----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELP 238 +G++ E L GLR + C + + I T K TV + Sbjct: 137 QARSDETPQGARDAAILEVLYGGGLRVGELCGLDLGDVDRSRQTVIVTGKGDKERTVPMG 196 Query: 239 DGFMKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWFKAKATK--AGVNKSAH 287 + + + + + Q +++ A + H Sbjct: 197 TPALHAIDTWLPRRAEWAGPDSGQALFLGARGGRIDQRVVRRVVHAHMRSEPDSPDLGPH 256 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337 G+R AT + GA + G +++ + YT + +R+R + + Sbjct: 257 GLRHAMATHLLEGGADLRTVQDILGHESLATTQIYTHVSTERLRTAFRQAH 307 >gi|303246043|ref|ZP_07332324.1| integrase family protein [Desulfovibrio fructosovorans JJ] gi|302492439|gb|EFL52310.1| integrase family protein [Desulfovibrio fructosovorans JJ] Length = 380 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 49/363 (13%), Positives = 107/363 (29%), Gaps = 50/363 (13%) Query: 17 RHGKIIYYFRKGHGRRIRLPYPHE---STFIPAYMSALTGSTPKREYINSPRKKP----- 68 R + + Y+ G+R + A+ A+ + K I P Sbjct: 6 RSERWMVYYHDDLGKRHDKSFGRGELGKAKAEAFEKAVQEANEKLLPIPDPETVTAGIRV 65 Query: 69 --------------------------TTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQ 101 TL L +Y + E +Q Sbjct: 66 AAKAAGAGTEATVPPASQVIEKKPTGITLSELGKKYLDHMRASGRTEKHIRNVERLLDNQ 125 Query: 102 IIRKSGDFDYRKITTK--HIRSGVESRKHTPSS--------AIQFLTSMRVLFKWAVRQE 151 + G+ +T + + + + + S+ ++ + +F + + Sbjct: 126 FVPVIGNKPVDSLTYQGDMVPFILHFKGVSGSTGKERSQYTVNKYCDYLSFIFNFGIDNG 185 Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCR 211 + +NP + ++PK + ++ T +D ++ + + F L + S+ Sbjct: 186 FTRVNPLKNWKKPKVQPWDLK-LTLDDARKIMEHAEPHLKWAMEVCFNLGTRPGESELLS 244 Query: 212 AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA-TQFS 270 + +++ + T +P L M +E+ + T Sbjct: 245 LRWDDVDFAAGTVRIYASKTKTYRTVPINPEFLKRMEIEKQESVSGFVIEYMGRGLTTIR 304 Query: 271 IWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGAD 327 FK +AG+ + +R AT + GA + G TV A+TY Sbjct: 305 KSFKNACQRAGITYPTRMYDLRHLFATTLLNKGADLAAVSKMMGHSTVKLTADTYYHYMS 364 Query: 328 RIR 330 + Sbjct: 365 GEK 367 >gi|319788011|ref|YP_004147486.1| tyrosine recombinase XerD [Pseudoxanthomonas suwonensis 11-1] gi|317466523|gb|ADV28255.1| tyrosine recombinase XerD [Pseudoxanthomonas suwonensis 11-1] Length = 326 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 40/299 (13%), Positives = 84/299 (28%), Gaps = 37/299 (12%) Query: 72 KWLISEYR-KSAHWGSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGVES 125 I+ + + LA S ++ + + R G + + Sbjct: 26 ARAIARFLDATWAERGLARASLDAYRRDLELLARWRDGTGGGLVGADREALFGYLAWRAG 85 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + P S + +R + V +P ++ P+ + ++ ++ Sbjct: 86 HGYGPRSNARLRACLRAFYAHLVLAGVRQDDPAALIDPPRMPRPLPKAMSESQVEALLGV 145 Query: 186 W----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDG 240 EG + R E + +GLR S+ + ++ + V L + Sbjct: 146 PDVSIPEGLRDRAMLELMYAAGLRVSELVNLPANAVNLRQGVVRVRGKGSKERLVPLGEE 205 Query: 241 FMKLLAMTPIGKETFFINNDKQK-----------------MNATQFSIWFKAKATKAGVN 283 L F K A AG++ Sbjct: 206 SQDWLERYLRESRPALTGGRPVPADASGEVPLFIGASRSAPTRQDFWRAIKRHAAAAGID 265 Query: 284 ---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 + HG+R AT + GA L G ++ + YT + ++ +R+ Sbjct: 266 PRTVTPHGLRHSFATHLLNHGADLRALQLLLGHASLSTTQIYT------LVAREHLQRL 318 >gi|119356400|ref|YP_911044.1| tyrosine recombinase XerC subunit [Chlorobium phaeobacteroides DSM 266] gi|119353749|gb|ABL64620.1| tyrosine recombinase XerC subunit [Chlorobium phaeobacteroides DSM 266] Length = 328 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 39/292 (13%), Positives = 81/292 (27%), Gaps = 41/292 (14%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQI---------IRKSGDFDYRKITTKHIRSGVE 124 + +++ ++ ++ + DQ ++ FD ++T +R + Sbjct: 21 AERFLGYLKTSKNVSRHTITAYRNDLDQFFSFMQRHLELQHMSLFDPEQVTVASVRLFMG 80 Query: 125 SRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 P S + L S++ +++ + + V P+ T++ ++ Sbjct: 81 DLLQRGLQPKSIARKLASVKSFYRYLQETGVIKSSVLSLVSTPRYPRHVPGFLTEQQTEK 140 Query: 182 FKSFWSEGS----------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-G 230 G + E L GLR S+ + +K Sbjct: 141 IFEQEDSGLFGSDDTFEFHRDISVLEMLYGCGLRISELIDLCPDDINFLQGYVKITGKGQ 200 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQ---------------KMNATQFSIWFKA 275 V L + + + FF N K+ K Sbjct: 201 KQRIVPLGTQAAEAVRKYFEVRRNFFRINKLMDEKELNHVFVTKRGKKLYPMLVQRITKK 260 Query: 276 KATKA--GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 K+ H +R AT + GA + G ++ E YT Sbjct: 261 YLMSVTEQKEKNPHLLRHTFATHLLNNGADLKSVSEMLGHSSLATTEIYTHV 312 >gi|260911952|ref|ZP_05918516.1| tyrosine type site-specific recombinase [Prevotella sp. oral taxon 472 str. F0295] gi|260633899|gb|EEX52025.1| tyrosine type site-specific recombinase [Prevotella sp. oral taxon 472 str. F0295] Length = 386 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 53/383 (13%), Positives = 124/383 (32%), Gaps = 42/383 (10%) Query: 5 LRLPPFVTKERTRHGKIIYY---FRKGHGRRIRLPYPHESTFIPA-----YMSALTGSTP 56 ++ P + +++ +G I Y +R G L A + ++ Sbjct: 4 IKEPIRLRQKKLANGNISLYLDIYRNGKREYEFLKMYLIPERSKADKEMNRQTLQLANSI 63 Query: 57 KREYINSPRKKPTTLKW------LISEYRKSAHWGSL----AVNSRISFESYFDQIIRKS 106 K + I + + L +Y ++ + + ++ S +++ Sbjct: 64 KSKRIVALQNGEYDFNDHYNTEVLFYDYYRAMCAKRRGNEESRGNWGNWYSCLRHMLKYE 123 Query: 107 GDFDY--RKITTKHIRSGVESRKH---------------TPSSAIQFLTS---MRVLFKW 146 + +IT + ++ + +H P + L+ +R Sbjct: 124 PNERITFAQITPEWVQGFKDYLEHDAVAWGNDYRKRIKDKPLARNSKLSYFNKLRACLNQ 183 Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRC 206 A + + NP +E K + T E++++ E + AF F +GLR Sbjct: 184 AFEERVIPYNPMRGIESFKPEDGMRMYLTLEEVRRLAQTDCEYPNIKRAFLFSCLTGLRR 243 Query: 207 SDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA 266 SD R + + + A + + + + Sbjct: 244 SDIIRMTWSEVFQQGEYTRIIFKQKKTNGQEYLDITGQAAELMGKRGRPEEHVFDEIHSP 303 Query: 267 TQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 T + + +AG+NK + H R A + D G + + G + + + Y K Sbjct: 304 TCTNTAIREWVLRAGINKKITFHCARHTFAVMMLDLGTDIYTVSKLLGHRELSTTQIYAK 363 Query: 325 GADRIRLGIKNSRRISSVVDSDD 347 D+ + K I +++++++ Sbjct: 364 VLDKNK--QKAVSSIPNILENEN 384 >gi|257431426|ref|ZP_05607800.1| integrase [Staphylococcus aureus subsp. aureus 68-397] gi|257277872|gb|EEV08536.1| integrase [Staphylococcus aureus subsp. aureus 68-397] Length = 345 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 44/329 (13%), Positives = 98/329 (29%), Gaps = 24/329 (7%) Query: 19 GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP--RKKPTTLKWLIS 76 GK Y K G+R R A + K + S TL+ Sbjct: 8 GKKWQYEFKHEGKRYRKKGFRTK------REANSAGLDKLNELRSGFNIDNYITLEEYFE 61 Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVES--RKHTPSSA 133 + K+ + N+ + + I + G + KI + + + ++H + Sbjct: 62 NWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDYSKEHAKETI 121 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVER----PKRKTEGIRPWTKEDMQQFKSFWSEG 189 + ++R A+ + NP V P + + E + Sbjct: 122 RKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEILKDHVRKKR 181 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-------KTGTIITVELPDGFM 242 ++ LA ++ +G S + ++H+ +I I M Sbjct: 182 TRSSLALFIMICTGCHVSGARNIKIEHINQVKNTIFIDERKTNTSPRYISIAKSDMKHIM 241 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301 +++ I + + +N + K+ + ++H +R + G Sbjct: 242 DVISTFAISYDGYIFKEAGSIINLHAINNALKSACRVNNIPIITSHALRHTHCSYLLAKG 301 Query: 302 ATAHELMATYGWKTVD-QAETYTKGADRI 329 + H + G K + Y+ + Sbjct: 302 VSIHYISKRLGHKNIAITTSVYSHLLEEK 330 >gi|91781471|ref|YP_556677.1| site-specific tyrosine recombinase XerC [Burkholderia xenovorans LB400] gi|91685425|gb|ABE28625.1| Putative integrase/recombinase [Burkholderia xenovorans LB400] Length = 307 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 40/294 (13%), Positives = 86/294 (29%), Gaps = 31/294 (10%) Query: 69 TTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127 T I+ Y + L+ ++ + +++ + ++ IR V Sbjct: 1 MTAADPIAAYLSNLEHERRLSAHTLRGYTHELEELKLLAKGRPLESLSAVDIRGAVSRAH 60 Query: 128 HTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 +A L++ R ++W + + NP +V PK+ + + +D + Sbjct: 61 AGGLTARSISHRLSAWRAFYRWLAGRVDLPANPVATVRAPKQPKTLPKALSVDDATRLME 120 Query: 185 ----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ-----------HLQNNIFSIKTQKT 229 EG + E SGLR ++ + ++ + ++ Sbjct: 121 SPPAASPEGLRDHAMLELFYSSGLRLAELVGLDARFADADGYRSAGWIKLDSAEVEVLGK 180 Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM---------NATQFSIWFKAKATKA 280 G V + + +D + + K A A Sbjct: 181 GNRRRVVPVGSKALEALAAWLAVRDQMVKHDPHPLFLSARGNRLSPNVVRERVKRAALVA 240 Query: 281 GVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 G+ H +R AT + + G ++ + YT D L Sbjct: 241 GIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYT-ALDFQHLA 293 >gi|258454466|ref|ZP_05702433.1| integrase [Staphylococcus aureus A5937] gi|437117|gb|AAA91615.1| integrase [Staphylococcus phage phi-42] gi|257863323|gb|EEV86084.1| integrase [Staphylococcus aureus A5937] Length = 345 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 45/329 (13%), Positives = 99/329 (30%), Gaps = 24/329 (7%) Query: 19 GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP--RKKPTTLKWLIS 76 GK Y K G+R R A + K + S TL+ Sbjct: 8 GKKWQYEFKHEGKRYRKKGFRTK------REANSAGLDKLNELRSGFNIDNYITLEEYFE 61 Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVES--RKHTPSSA 133 + K+ + N+ + + I + G + KI + + + ++H + Sbjct: 62 NWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDYSKEHAKETI 121 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVER----PKRKTEGIRPWTKEDMQQFKSFWSEG 189 + ++R A+ + NP V P + + E + Sbjct: 122 RKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEILKDHVRKKR 181 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-------KTGTIITVELPDGFM 242 ++ LA ++ +G R S + ++H+ +I I M Sbjct: 182 TRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTDTSPRYISIAKSDMKHIM 241 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301 +++ I + + +N + K+ + ++H +R + G Sbjct: 242 DVISTFAISYDGYIFKEAGSIINLQAINNALKSACRVNNIPIITSHALRHTHCSYLLAKG 301 Query: 302 ATAHELMATYGWKTVD-QAETYTKGADRI 329 + H + G K + Y+ + Sbjct: 302 VSIHYISKRLGHKNIAITTSVYSHLLEEK 330 >gi|282925002|ref|ZP_06332667.1| integrase [Staphylococcus aureus A9765] gi|282592696|gb|EFB97703.1| integrase [Staphylococcus aureus A9765] Length = 345 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 45/329 (13%), Positives = 98/329 (29%), Gaps = 24/329 (7%) Query: 19 GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP--RKKPTTLKWLIS 76 GK Y K G+R R A + K + S TL+ Sbjct: 8 GKKWQYEFKHEGKRYRKKGFRTK------REANSAGLDKLNELRSGFNIDNYITLEEYFE 61 Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVES--RKHTPSSA 133 + K+ + N+ + + I + G + KI + + + ++H + Sbjct: 62 NWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDYSKEHAKETI 121 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVER----PKRKTEGIRPWTKEDMQQFKSFWSEG 189 + ++R A+ + NP V P + + E + Sbjct: 122 RKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEILKDHVRKKR 181 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-------KTGTIITVELPDGFM 242 ++ LA ++ +G R S + +H+ +I I M Sbjct: 182 TRSSLALFIMICTGCRVSGARNIKTEHINQVKNTIFIDERKTDTSPRYISIAKSDMKHIM 241 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301 +++ I + + +N + K+ + ++H +R + G Sbjct: 242 DVISTFAISYDGYIFKEAGSIINLQAINNALKSACRVNNIPIITSHALRHTHCSYLLAKG 301 Query: 302 ATAHELMATYGWKTVD-QAETYTKGADRI 329 + H + G K + Y+ + Sbjct: 302 VSIHYISKRLGHKNIAITTSVYSHLLEEK 330 >gi|251780370|ref|ZP_04823290.1| site-specific recombinase, phage integrase family [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084685|gb|EES50575.1| site-specific recombinase, phage integrase family [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 398 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 50/378 (13%), Positives = 106/378 (28%), Gaps = 62/378 (16%) Query: 15 RTRHGKIIYYFR--KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 R R K Y F G+R ++ T A + + + Sbjct: 7 RKRGEKWQYQFEAATIDGKRKQITKSGFRTKKEALEAGTKALAEYNNCGLTFTPSEISFN 66 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 + + K +L + ++ I K G + + +T ++S + + + Sbjct: 67 DYLDYWIKEYAQVNLKETTVDNYNKKIKLYIKPKLGIYKLKSLTPAILQSFINEKFNEGF 126 Query: 132 SAIQFL---TSMRVLFKWAVRQ-EYVAINPCLSVERP--------KRKTEGIRPWTKEDM 179 S L + +AV Y+ +P +V P + + ++E M Sbjct: 127 SRNTLLVLKGILSGSLNYAVEPLGYIKFSPMAAVRLPLKRAVPNTPTRKKEKYIISEEQM 186 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN---------------NIFSI 224 ++ + L + GLR ++ + + + Sbjct: 187 KKIFERFPFEHSSYLPLQLAYRCGLRLGEAFAITWEDVDFENGKLDINKQVQYKNKYWYF 246 Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN------------------------- 259 K + ++L + + +L + I Sbjct: 247 SPPKYDSYRIIDLDNTIIDILKKYKQQQRKDKIYYGELYTELKINDKKQINEFDGTEIHL 306 Query: 260 -----DKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGW 313 + + F K G+ H +R AT+ +GA + G Sbjct: 307 INIRENGTYIQPRVMQHCFHIIHHKLGIKELDYHSLRHTHATMLLSSGANIKAVQERLGH 366 Query: 314 KTVDQA-ETYTKGADRIR 330 K +D + YT D++R Sbjct: 367 KKLDMTLDVYTHVTDKMR 384 >gi|315024066|gb|EFT37068.1| Integrase, site-specific recombinase [Riemerella anatipestifer RA-YM] Length = 293 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 39/270 (14%), Positives = 92/270 (34%), Gaps = 21/270 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRKH- 128 + ++ ++N+ S+ G + K IR+ V Sbjct: 4 VEKFLDYITIEKRYSLNTLASYSRDLQDFSDFVKETEGADTLISVDKKVIRNFVVYLSEN 63 Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ--QFKS 184 + + + L+++R + + V+ ++ +P +V K E P+++++M+ Q Sbjct: 64 NLSKRTINRKLSALRSFYIYLVKLGIISASPMETVSSLKFYGEKQIPFSQKEMENLQNLL 123 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243 + +L E L +G+R S+ CR ++ + I+ + + + + + Sbjct: 124 NEEKLLLNKLIIELLYQTGMRKSELCRLALKDVDFIQNRIRVVGKGNKMREIPISENIKR 183 Query: 244 LLAMTPIGKETFFINNDKQKMNATQ--------FSIWFKAKATK--AGVNKSAHGVRKFS 293 L + + N + + KS H +R Sbjct: 184 ELKLYLEKERKPTKENLDYFFVRESGQKLTGKFVYSVVNDYLSAVTSKKKKSPHVLRHSF 243 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYT 323 AT + GA ++ G ++ + YT Sbjct: 244 ATHVLENGAEIAQVKEILGHASLASTQVYT 273 >gi|153955710|ref|YP_001396475.1| tyrosine recombinase [Clostridium kluyveri DSM 555] gi|146348568|gb|EDK35104.1| Predicted tyrosine recombinase [Clostridium kluyveri DSM 555] Length = 287 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 40/285 (14%), Positives = 97/285 (34%), Gaps = 20/285 (7%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVES 125 LK +++Y+K + + + ++ ++ + + IT ++ ++S Sbjct: 4 LKAAVNQYKKYLINTEKSKETITGYSNHLKRMESYLIEKFNYPPYLQDITLTNLEEYLDS 63 Query: 126 RKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + +S + +R + + R+E V N L++E K K + TK ++ Sbjct: 64 QLARGLAQASRSKSYYIIRSFYNYCCRKELVEKNIALNLEPIKVKRKERTYLTKNEVIV- 122 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDG 240 E + + ++G+R S+ ++ + I K + + D Sbjct: 123 LVQKMENELIKTIVMAIYHTGMRISECTNLKIKSVDFKNKVIHIIGGKGNKDRDIPISDT 182 Query: 241 FMKLLAMTPIGKETFFINNDKQ------KMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292 K+L + +N +++ + + G K SAH +R Sbjct: 183 LNKILTKYIKNERLEVNSNYFFATKASGRISPQHINRQINETVKRLGWEKHVSAHILRHS 242 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNS 336 A+ ++ G + YT + + +R + Sbjct: 243 FASKLIQQEVNLVKIQKLLGHSDLRVTSIYTHTSKEELRQAVNVI 287 >gi|160880725|ref|YP_001559693.1| integrase family protein [Clostridium phytofermentans ISDg] gi|160429391|gb|ABX42954.1| integrase family protein [Clostridium phytofermentans ISDg] Length = 291 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 35/270 (12%), Positives = 83/270 (30%), Gaps = 20/270 (7%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSG---VESRK 127 I ++ + N+ ++ + + + IT I S E Sbjct: 5 IEDFLIYQKNIKNATDNTLSAYRIDLKRWYLFLQENSVSESKKITETMINSFLLQQEKEG 64 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + ++ + L S+R + ++ + +P ++ PK + R TKE + S Sbjct: 65 KSKATVNRNLVSIRSFLFYLMKHGKLIGDPTERIKPPKVEIAPPRYLTKEQVLSLLSAPD 124 Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 + + + E + +G++ S+ + + + ++ V Sbjct: 125 SNTKRGLRDKAMLELMYATGMKVSEIGGLKKEDINLKFGCVTVRELKKNRVVPFGQAARA 184 Query: 244 LLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 L F+ + M K + G+ + + +R A Sbjct: 185 SLEAYLASEDDVRKESPYLFLGRQGEPMTRQGVWKIMKYYGKQIGLEEDLTPQAIRNSFA 244 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324 + GA + + G + + YTK Sbjct: 245 IHMIENGADLNSMKELMGHANITATQHYTK 274 >gi|172057895|ref|YP_001814355.1| integrase family protein [Exiguobacterium sibiricum 255-15] gi|171990416|gb|ACB61338.1| integrase family protein [Exiguobacterium sibiricum 255-15] Length = 292 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 41/275 (14%), Positives = 87/275 (31%), Gaps = 17/275 (6%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--- 126 L + + H L+ N+ S++ Q D I R + + Sbjct: 7 FDVLRKSFLRYVHIERQLSPNTGRSYDQTLRQYAAFCLDHQLGSIELATARRYLFALYDQ 66 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 K + S+ Q ++ ++ ++ R +NP ++ PKR + ++F + Sbjct: 67 KASKSTIAQKVSCLKQFGRFVTRDTN-DVNPFEGLKAPKRVQTLPTFLVPSEYERFLEVF 125 Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGF 241 G + E L +G+R S+ V+ L ++ + K + Sbjct: 126 RTSDALGVRNVALIELLYATGMRVSELAGLNVKDLDSDLEYVHVYGKGRKERITPIGSFA 185 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIW---FKAKATKAGV----NKSAHGVRKFSA 294 K L ++ ++ + + + KA + + H +R A Sbjct: 186 RKALTDYLAERQPTEDEEQAVFLSRSGRRLTTDGIRKILKKADPFLSKHVTPHALRHSFA 245 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 T + GA + G ++ YT Sbjct: 246 TDLLERGADLRAVQELLGHASLSTTGQYTHVTTER 280 >gi|78776442|ref|YP_392757.1| Phage integrase [Sulfurimonas denitrificans DSM 1251] gi|78496982|gb|ABB43522.1| Phage integrase [Sulfurimonas denitrificans DSM 1251] Length = 377 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 46/368 (12%), Positives = 93/368 (25%), Gaps = 44/368 (11%) Query: 10 FVTKERTRHGKIIYYFRKGHG----RRIRLPYPHE-------STFIPAYMSALTGSTPKR 58 V G YY R +R+++ + ++A Sbjct: 12 GVQYYIKADGTKSYYVRYKDEENRLKRVKIGDETDGTTEVYCKNKRIEILNAQNKGEQPP 71 Query: 59 EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH 118 + + + RKK TL + +Y + + ++ Y I G IT Sbjct: 72 KIVKNHRKKVLTLNEVADKYFTT---KDSSRSTFDRISKYKKHIAPVLGHRGVTGITKND 128 Query: 119 IRSGVE----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 + S + + +P +A + +F + ++E + + + Sbjct: 129 LISIQDSIIKEQNLSPQTANMVIELFGTIFIYGFKEEMYEAVNPTLKVQKFKVRNTRERF 188 Query: 175 TKEDMQQFKS--------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226 + + + G L + L +G R + I+ Sbjct: 189 LNKLEIEELFDAAKQYDEKNANGGVLELFTKLALTTGARMESVLNIKKCDIDLQNDIIRL 248 Query: 227 QKTGT--IITVELPDGFMKLLAMTPIGKETFFINNDKQKMN-----ATQFSIWFKAKATK 279 + + L F N A Q K Sbjct: 249 VDLKNGGEVYSGYITDTTRELLYQKSKAIKFTDYLISFNNNGKKIGARQLQTRLKPLLDD 308 Query: 280 A---GVNKS-------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADR 328 G++ H +R A+ A A ++ + Q Y K D Sbjct: 309 LFNQGLDVKDRKNRIVIHSLRHTCASQLAMANVPILQIQELLNHADISQTVRYAKLQGDA 368 Query: 329 IRLGIKNS 336 + I+ Sbjct: 369 NKKAIQGV 376 >gi|27375301|ref|NP_766830.1| site-specific integrase/recombinase [Bradyrhizobium japonicum USDA 110] gi|34222843|sp|Q89XW5|XERD_BRAJA RecName: Full=Tyrosine recombinase xerD gi|27348437|dbj|BAC45455.1| xerD [Bradyrhizobium japonicum USDA 110] Length = 318 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 41/279 (14%), Positives = 84/279 (30%), Gaps = 38/279 (13%) Query: 89 VNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL 143 N+ ++ G D T + + +++R +S + L++MR L Sbjct: 26 PNTLDAYRRDLTDFSEFLGRVGHSFADAETQTLRDYLADLDTRGFKSTSVARRLSAMRHL 85 Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE--------------G 189 +++ + + +P + PKR + + D+ + E Sbjct: 86 YRFLLNERIRGDDPAAILSGPKRGRGLPKVLSIADVDRMLRRARELSEAEDASPSKRLRA 145 Query: 190 SQPRLAFEFLLYSGLRCSDSCR-AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248 + E L +GLR S+ ++ + K V L + + +A Sbjct: 146 LRLYCLLEVLYATGLRVSELVALPRTAAKRDARMIVVRGKGNKERLVPLNEASRQAMADY 205 Query: 249 ---------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290 K F + + F+ K A +G+ S H +R Sbjct: 206 LAATEAAKSDKKTGVAASKWLFPSFGESGHLTRQHFARDLKELAVASGLQARLVSPHVLR 265 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 A+ GA + G + + YT + Sbjct: 266 HAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEER 304 >gi|225025686|ref|ZP_03714878.1| hypothetical protein EIKCOROL_02588 [Eikenella corrodens ATCC 23834] gi|224941579|gb|EEG22788.1| hypothetical protein EIKCOROL_02588 [Eikenella corrodens ATCC 23834] Length = 344 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 58/342 (16%), Positives = 113/342 (33%), Gaps = 29/342 (8%) Query: 2 TPSLRLPPFV--TKERTRHGK--IIYYFR-KGHGRRIRLPYPHESTFIPAYMSALTGSTP 56 + + LP + + ++GK + YY+ + GRR +P + S L + Sbjct: 6 SANSNLPDRMLARRRTRKNGKTTVYYYYDGREDGRRKEIPLGTDYIAAVQEWSKLEAA-- 63 Query: 57 KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF---DYRK 113 P+ T Y ++ + N+ S + ++ + G + Sbjct: 64 -----KLPKSARVTFPVAAERYLQNIISHR-SRNTISSANNAVRKLSKFFGGENPAPLDE 117 Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 I H+R ++ RK TP A + + +F +A Q + + K+ ++ R Sbjct: 118 IEPAHVRRYLDWRKDTPGGANNEIGYLSAIFNYAREQGWTSKEN--PCRNVKKHSKKRRE 175 Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233 ED + + Q R + +G R D H+ I I QKTG + Sbjct: 176 VYIEDYLYQAVYQAASQQMRDLMDIAYITGQRPVDIVGIHSSHIHEGILHISQQKTGAKL 235 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT-------KAGVNKS- 285 E+ +++ F+N+ + ++ S F + S Sbjct: 236 RFEISGKLKEIIDRIHQDNGYLFLNSHGKPLSRAALSRQFLELRKTVMQQRPELAEELSA 295 Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 +R +AT A A G + + Y + Sbjct: 296 FQFRDLRAKAATDIYLA-ADTRSASDQLGHASEQMTKIYIRR 336 >gi|189184504|ref|YP_001938289.1| putative integrase [Orientia tsutsugamushi str. Ikeda] gi|189184591|ref|YP_001938376.1| putative integrase [Orientia tsutsugamushi str. Ikeda] gi|189181275|dbj|BAG41055.1| putative integrase [Orientia tsutsugamushi str. Ikeda] gi|189181362|dbj|BAG41142.1| putative integrase [Orientia tsutsugamushi str. Ikeda] Length = 399 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 54/352 (15%), Positives = 113/352 (32%), Gaps = 29/352 (8%) Query: 2 TPSLRLPPFVTKERTRHGKIIYYFRKGHGR---RIRLPYPHESTFIPAYMSALT------ 52 T ++ P + +R G+ F K + ++ + + + A A Sbjct: 27 TIKDKIEPGLQLRISRSGRKTCSFEKKFRKEGIKMTIGVFPDLSIKEARKKARELKRLMA 86 Query: 53 -GSTPKREYINSPRKKP---------TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI 102 G P+ E + T K L +Y + + + + Sbjct: 87 KGIDPREEKRQQQIAEDEKRLKARQDITFKELCYKYIEEY-AKIYTIYWQKDTARIHNYA 145 Query: 103 IRKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 I + I ++A QFL ++ +F A++ E + NP L Sbjct: 146 KPLF-LKKISDIKSNDIEQIFNDISKDGKYATANQFLITLSSIFNKAIKWELIDRNPTLK 204 Query: 161 -VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219 + + E + + R LY+G R ++ ++ Sbjct: 205 IDKHKMQARERRLSYDEMSKFLHVLCGEATPLIRDFALLALYTGARKTNVLEMEWDNIDF 264 Query: 220 --NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW--FKA 275 I+ I K G + L D +++L + ++ ++ + + + + + Sbjct: 265 VRKIWHIPKTKNGKAQNIPLTDEIIEILQARKLTSKSKWVLSTDKSKSGHLEYPYRGWYK 324 Query: 276 KATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 KAG+ H +R+ A+ AD GA + + A + YTK + Sbjct: 325 ICKKAGIKNLRIHDLRRTFASCMADEGAGQYIISAALNHSDIKSTSIYTKVS 376 >gi|149924555|ref|ZP_01912912.1| Phage integrase [Plesiocystis pacifica SIR-1] gi|149814565|gb|EDM74148.1| Phage integrase [Plesiocystis pacifica SIR-1] Length = 374 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 50/328 (15%), Positives = 86/328 (26%), Gaps = 29/328 (8%) Query: 26 RKGHGR--RIRLPYPHESTFIPAYM-SALTG--------STPKREYINSPRKKPTTLKWL 74 R +G+ R R PH S E P+K+ T Sbjct: 20 RLPNGKSHRERRKSPHSSKAASLRWGRERERYLLVHGPMRRASGEDTAQPKKEVPTFAEF 79 Query: 75 ISEYRK-SAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPS- 131 Y + + S E + I+ GD ++ + + T Sbjct: 80 APRYVEGQVKGNGAKPSHVESIERHLRIHILPAFGDKRLDELEQEDLERFKAKLGETRKN 139 Query: 132 -SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 + T++ L K AV + + P + + E + + S Sbjct: 140 KTINNIQTTLSTLLKAAVAWKVIEEVPVEIKRLRVVRKKMDFFDFDEFARLREFAAKAPS 199 Query: 191 QPRLAFEFLLYS--GLRCSDSCRAGVQ-----------HLQNNIFSIKTQKTGTIITVEL 237 LL GLR + I T K I + + Sbjct: 200 DATDLAIVLLGGDAGLRAGEIRGLHWNSLDFQRNRLTVEWAEWRGQITTPKHDKIRVLPM 259 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATI 296 K L P ++ + S + +AG+ +K H +R + Sbjct: 260 TQRLQKALRQLPRDRKLVLAQPSGDPLTVGLLSKRLRRVEKRAGLRDKGPHTLRHTFCSH 319 Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324 A G A + G ++ E Y Sbjct: 320 LAMRGIPARVIQQLAGHSSLVTTERYMH 347 >gi|114706518|ref|ZP_01439419.1| tyrosine recombinase [Fulvimarina pelagi HTCC2506] gi|114537910|gb|EAU41033.1| tyrosine recombinase [Fulvimarina pelagi HTCC2506] Length = 319 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 45/304 (14%), Positives = 93/304 (30%), Gaps = 39/304 (12%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRSGVES 125 IS + ++ + + ++E Q + D+ D+ + +RS + + Sbjct: 16 ISAWLEALRNERQASEETVEAYERDVRQFMIFLTDYHARPSELDDFADLKPMDLRSFLAA 75 Query: 126 RKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT------- 175 R+ + A + L+ +R + ++ + ++ PK+ RP + Sbjct: 76 RRRDGAGARSLGRGLSGIRSFLRHLEKRGLASSAGAKAMRAPKQTKGLPRPLSVAGALDV 135 Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTII 233 E+ F + G++ L GLR S++ L + + K G Sbjct: 136 TEEADAFSTEPWVGARDVAVLTLLYGCGLRISEALTLRGDALTDEMARSMTIRGKGGKTR 195 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGVN--K 284 V L + +A + G+ Sbjct: 196 LVPLIPAVHEAVATYRRLCPHDLDAGHPLFRGVRGGPLRPQIVQRNMARLRGAFGLPPSA 255 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 + H +R AT AG + G ++ + YT + R+ SV D Sbjct: 256 TPHALRHSFATHLLAAGGDLRTIQDLLGHASLSTTQAYT--------AVDA-DRLLSVYD 306 Query: 345 SDDP 348 + P Sbjct: 307 NAHP 310 >gi|254884116|ref|ZP_05256826.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA] gi|254836909|gb|EET17218.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA] Length = 376 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 51/360 (14%), Positives = 106/360 (29%), Gaps = 37/360 (10%) Query: 4 SLRLPPFVTKERTRHGKIIYY---FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60 ++ P + + +G Y +R G L + Sbjct: 9 KVKEPIRLRTKELANGSKSLYLDIYRNGKRTYEYLKMYLIPETDRNARQQNETTMAAANA 68 Query: 61 INSPRKKPTT--------------LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS 106 I S R T L + Y++ N+ +S D + + Sbjct: 69 IKSKRIIELTSGEAGIMNHKDKVYLLDWMQLYKEEQKKRG-KKNT-GQIKSVTDILKEYA 126 Query: 107 GDF-DYRKITTKHIRSGVESR---------KHTPSSAIQFLTSMRVLFKWAVRQEYVAIN 156 G+ ++ ++ + S+ + AVR + + N Sbjct: 127 GERFTLNQVDLTFCHGYIDYMLTSYRPKGKPLSASTRNTYYQIFNGALNAAVRAKRILKN 186 Query: 157 P---CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213 P E+PK T E+++ + + + A+ F + GLR SD Sbjct: 187 PFNEMEKSEKPKMPESVRSYMTIEEVRSLIATPMQNEGVKSAYLFSCFCGLRISDIIGLQ 246 Query: 214 VQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272 +++ + + + L P + ++ + + Sbjct: 247 WKNVFIDNGQYRLAVAMQKTKEPIYLPLSNEALKWMPERGDKTADDHVFDL--PSGINQL 304 Query: 273 FKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 K A AG++K + H R AT+ GA + + G +V + Y K ++ + Sbjct: 305 IKPWAKAAGISKRFTFHTARHTFATMMLTLGADLYTVSKLLGHTSVKMTQVYAKIVNKKK 364 >gi|15891311|ref|NP_356983.1| site-specific tyrosine recombinase XerD [Agrobacterium tumefaciens str. C58] gi|34222927|sp|Q8U9U6|XERD_AGRT5 RecName: Full=Tyrosine recombinase xerD gi|15159692|gb|AAK89768.1| site-specific recombinase [Agrobacterium tumefaciens str. C58] Length = 331 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 44/318 (13%), Positives = 97/318 (30%), Gaps = 53/318 (16%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRS---GVESRKH 128 + + + A N+ S+E + G + T + + + ++ Sbjct: 14 LESFLEMMSAERGAAANTLSSYEHDLADLREFLGRRGQSLTEAQTPDLSAYLTHLAAQGF 73 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----- 183 +S + L+SMR +++ + +P ++ P++ + + D+ + Sbjct: 74 AATSQARRLSSMRQFYRFLYSEGLRGDDPTGIIDAPRKGLALPKTMSVADVNRLLGLAAQ 133 Query: 184 ------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVE 236 + L E L +G+R S+ V+ L+ + K V Sbjct: 134 EAATEGPGQLARIRMHLLLELLYATGMRVSELVSLPVKVLRQEGRFLMIRGKGNKDRMVL 193 Query: 237 LPDGFMKLLAMTP-----------------------IGKETFFINNDKQKMNATQFSIWF 273 L ++ + F N+ + + F+ Sbjct: 194 LSRAAIEAMEKYEAGRKALSQEKSKAAASQKKTDTAESPWLFPSNSKEGHLPRQVFARDL 253 Query: 274 KAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 K A +AG+ S H +R A+ GA + G + + YT + Sbjct: 254 KDIAIRAGLTASAVSPHVLRHAFASHLLQNGADLRAVQELLGHSDISTTQIYTHVLEE-- 311 Query: 331 LGIKNSRRISSVVDSDDP 348 R+ +V + P Sbjct: 312 -------RLQELVQTHHP 322 >gi|294852313|ref|ZP_06792986.1| hypothetical protein BAZG_01235 [Brucella sp. NVSL 07-0026] gi|294820902|gb|EFG37901.1| hypothetical protein BAZG_01235 [Brucella sp. NVSL 07-0026] Length = 341 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 59/339 (17%), Positives = 114/339 (33%), Gaps = 24/339 (7%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 + G+ YY G +R P + F+ + A + P + Sbjct: 11 KVNAKGRTYYYA-WRGGPALR-GEPGSAEFMDSLQEA-------NDSWVIPDASK--FRA 59 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVESRKH 128 +I+ Y+ S + LA +++ ++ + D+I +K GD + IR Sbjct: 60 VITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSIAQFDLPQKIRPVIRKWRGEFAD 119 Query: 129 TPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 P +A + + + +AV ++ NPC +++ + WT +D+ + K+ Sbjct: 120 KPRTADYGMQVLSRVLSYAVDPLGKISQNPCEGIKQLYKNDRAAIIWTDQDIARLKTKC- 178 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLL 245 + A + ++GLR D R H+ +N + + + L LL Sbjct: 179 -SPEVAWAVDLAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRHTKEAVIPLYAELRALL 237 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGA 302 P N K F F +A + + H R AT AG Sbjct: 238 QTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLHFHDFRGTVATKFYIAGL 297 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 + + GW+ + R + ++I Sbjct: 298 SERVIAEIMGWEEETVRNIIRRYVSRTAAIVATIKQIDE 336 >gi|294678724|ref|YP_003579339.1| tyrosine recombinase XerC [Rhodobacter capsulatus SB 1003] gi|294477544|gb|ADE86932.1| tyrosine recombinase XerC [Rhodobacter capsulatus SB 1003] Length = 307 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 36/289 (12%), Positives = 82/289 (28%), Gaps = 29/289 (10%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD--------YRKITTKHIRSG 122 + ++ + A ++ ++ S + + +R+ Sbjct: 10 RTAMALWISHLRAIDGAASHTLTAYSSDVAGFLAFLHRHRGESLGLAQLAGLGQSDMRAW 69 Query: 123 VES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE-- 177 + R + S + L++++ +W +E LS + PK + + RP + E Sbjct: 70 MAHERNRGLSGRSLARALSAVKNFIRWLAAREGFDATHVLSAKAPKYQRKLPRPLSVEAA 129 Query: 178 -----DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 ++ ++ + GLR S++ K Sbjct: 130 AEVLEQVEVQAQEPWIAARDSAVMTLMYGCGLRVSEALALKGSDAPLPEVLRIRGKGDKE 189 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGVNKS 285 V + K +A + +N + + G+ + Sbjct: 190 RLVPVLPAARKAVADYLRLCPFPMSRYEPLFRGARGGPLNPRLVAKSMERARLGLGLPAT 249 Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R AT G + G ++ + YT D+ RL Sbjct: 250 ATPHALRHSFATHLLAEGGDLRAIQELLGHASLATTQVYT-AVDQARLM 297 >gi|193222420|emb|CAL63069.2| Tyrosine recombinase xerC [Herminiimonas arsenicoxydans] Length = 318 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 51/298 (17%), Positives = 95/298 (31%), Gaps = 39/298 (13%) Query: 73 WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRK 127 + Y + L+ + S+ +++ + G+ I+ IR Sbjct: 8 AYLDGYLDNLISQRQLSPLTITSYRRDLLELLALATASDGNAALSAISHFQIRKFAAQLH 67 Query: 128 HTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 S + L++ R F W Q VA NP ++ PKR + +D + S Sbjct: 68 AKGLNARSIARKLSAWRGFFTWLSEQNAVASNPVDGIKAPKRNKPLPKALAADDAVRLVS 127 Query: 185 FWSEGSQP--------RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG------ 230 S G R FE L SGLR S+ +++ Q N ++ Sbjct: 128 SNSPGKNADATMQLCNRAMFELLYSSGLRASELVGLDLKYAQENRYTSAGWIDFDAHEAM 187 Query: 231 ------TIITVELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAK 276 + + + + L + F++ +++A + KA Sbjct: 188 VTGKGSKMRSAPIGQPAIDALKAWLAVRDTLLKLDPHPLFLSERGTRISARVLQLRLKAH 247 Query: 277 ATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 A G+ H +R A+ + + G ++ + YT D RL Sbjct: 248 AQAVGLPMDVHPHVLRHSFASHVLQSSGDLRAVQEMLGHASISATQIYT-SLDFQRLA 304 >gi|15927578|ref|NP_375111.1| integrase [Staphylococcus aureus subsp. aureus N315] gi|30043990|ref|NP_835517.1| integrase [Staphylococcus phage phiN315] gi|258413679|ref|ZP_05681953.1| integrase [Staphylococcus aureus A9763] gi|258447832|ref|ZP_05695967.1| integrase [Staphylococcus aureus A6224] gi|282928804|ref|ZP_06336397.1| integrase [Staphylococcus aureus A10102] gi|13701797|dbj|BAB43090.1| integrase [Staphylococcus aureus subsp. aureus N315] gi|257839632|gb|EEV64102.1| integrase [Staphylococcus aureus A9763] gi|257858929|gb|EEV81797.1| integrase [Staphylococcus aureus A6224] gi|282589539|gb|EFB94627.1| integrase [Staphylococcus aureus A10102] gi|285817688|gb|ADC38175.1| Integrase, phage associated [Staphylococcus phage phiN315] gi|312830375|emb|CBX35217.1| phage integrase family protein [Staphylococcus aureus subsp. aureus ECT-R 2] Length = 345 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 45/329 (13%), Positives = 99/329 (30%), Gaps = 24/329 (7%) Query: 19 GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP--RKKPTTLKWLIS 76 GK Y K G+R R A + K + S TL+ Sbjct: 8 GKKWQYEFKHEGKRYRKKGFRTK------REANSAGLDKLNELRSGFNIDNYITLEEYFE 61 Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVES--RKHTPSSA 133 + K+ + N+ + + I + G + KI + + + ++H + Sbjct: 62 NWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDHSKEHAKETI 121 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVER----PKRKTEGIRPWTKEDMQQFKSFWSEG 189 + ++R A+ + NP V P + + E + Sbjct: 122 RKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEILKDHVRKKR 181 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-------KTGTIITVELPDGFM 242 ++ LA ++ +G R S + ++H+ +I I M Sbjct: 182 TRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTDTSPRYISIAKSDMKHIM 241 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301 +++ I + + +N + K+ + ++H +R + G Sbjct: 242 DVISTFAISYDGYIFKEAGSIINLQAINNALKSACRVNNIPIITSHALRHTHCSYLLAKG 301 Query: 302 ATAHELMATYGWKTVD-QAETYTKGADRI 329 + H + G K + Y+ + Sbjct: 302 VSIHYISKRLGHKNIAITTSVYSHLLEEK 330 >gi|299533133|ref|ZP_07046518.1| phage integrase [Comamonas testosteroni S44] gi|298718910|gb|EFI59882.1| phage integrase [Comamonas testosteroni S44] Length = 348 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 44/303 (14%), Positives = 90/303 (29%), Gaps = 42/303 (13%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQI--IRKSGDFDYRKITTKHIRSGVESRK 127 L ++ Y + LA + + ++ ++ + + HIR Sbjct: 16 LPEVVHSYLEHVRVQKRLAERTHTLYALDLIKLQSFAQAAAQELLTLQPSHIRRFAAQMH 75 Query: 128 HTPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED------ 178 SA L+ R F+WA ++E V NP V PK + +D Sbjct: 76 GAGRSARGIALILSGWRSFFRWAAQRELVPFNPVEGVRGPKAAKPLPKALAVDDAVQLAS 135 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--------- 229 Q ++ ++ E L GLR ++ ++ Q + + Sbjct: 136 FQNPEADPWMEARDVAMTELLYSCGLRVAELVGLDLRPDQQSRHEGRGWIDLEAGDAHVQ 195 Query: 230 ---GTIITVELPDGFMKLLAMTPIGKETF---------------FINNDKQKMNATQFSI 271 V + + L + F+ ++++A Sbjct: 196 GKGSKRRIVPVGRMAILALQRWLALRSCALVGAAQLKAQDEAALFVGRRGERLSAQSVWS 255 Query: 272 WFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 K + +AG+ H +R A+ + + G ++ + YT+ D Sbjct: 256 RLKQRGQQAGLATGVHPHVLRHSFASHMLQSSGDLRAVQELLGHSSIATTQIYTR-LDFQ 314 Query: 330 RLG 332 L Sbjct: 315 HLA 317 >gi|253315027|ref|ZP_04838240.1| integrase [Staphylococcus aureus subsp. aureus str. CF-Marseille] Length = 341 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 45/329 (13%), Positives = 99/329 (30%), Gaps = 24/329 (7%) Query: 19 GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP--RKKPTTLKWLIS 76 GK Y K G+R R A + K + S TL+ Sbjct: 8 GKKWQYEFKHEGKRYRKKGFRTK------REANSAGLDKLNELRSGFNIDNYITLEEYFE 61 Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVES--RKHTPSSA 133 + K+ + N+ + + I + G + KI + + + ++H + Sbjct: 62 NWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDHSKEHAKETI 121 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVER----PKRKTEGIRPWTKEDMQQFKSFWSEG 189 + ++R A+ + NP V P + + E + Sbjct: 122 RKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEILKDHVRKKR 181 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-------KTGTIITVELPDGFM 242 ++ LA ++ +G R S + ++H+ +I I M Sbjct: 182 TRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTDTSPRYISIAKSDMKHIM 241 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301 +++ I + + +N + K+ + ++H +R + G Sbjct: 242 DVISTFAISYDGYIFKEAGSIINLQAINNALKSACRVNNIPIITSHALRHTHCSYLLAKG 301 Query: 302 ATAHELMATYGWKTVD-QAETYTKGADRI 329 + H + G K + Y+ + Sbjct: 302 VSIHYISKRLGHKNIAITTSVYSHLLEEK 330 >gi|228912100|ref|ZP_04075819.1| Phage integrase [Bacillus thuringiensis IBL 200] gi|228847544|gb|EEM92479.1| Phage integrase [Bacillus thuringiensis IBL 200] Length = 385 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 42/355 (11%), Positives = 92/355 (25%), Gaps = 45/355 (12%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 R R+ K Y R + + A K ++ + T Sbjct: 5 RKRNDKWEYRIRYKEMGKYKETSKGGFKTKKEAQLAAAKIEEKLVNGSNIQDGKITFNEY 64 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR--KHTPS 131 + E+ G++A + + +E I+ G+ + +T + + + K++ Sbjct: 65 LYEWLNVFKKGNVAPRTYMVYEKNIRLHILPVFGELKLKDLTRIKYQKFINNLLEKYSKK 124 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE--- 188 + +M AV + + + + + + + + Sbjct: 125 TVETINVTMHHALDTAVNELGILEKNPTTKIKLRTTRVSSKNDDIKCYDIDELHQFLTYI 184 Query: 189 -----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF------------------SIK 225 G + F FL +GLR + + + Sbjct: 185 LNEKGGFKYYSLFMFLSRTGLRIGECLALQWEDIDFEEQKLFINKTLITTKRNEKILFGP 244 Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW------------- 272 + + T+ L + L I + + N K Sbjct: 245 PKNRSSKRTISLDSSTISHLRKMKIEQNKNTLKNGKYYKEYNFVFTHEDNSCMLHPATLK 304 Query: 273 -FKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324 + K + + HG R A +GA + G ++D Y Sbjct: 305 FLQQACKKGNLKYITLHGFRHTHAVHLLQSGANLKYVSERLGHSSIDMTANVYLH 359 >gi|307277175|ref|ZP_07558279.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecalis TX2134] gi|312905113|ref|ZP_07764234.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecalis TX0635] gi|306506105|gb|EFM75271.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecalis TX2134] gi|310631503|gb|EFQ14786.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecalis TX0635] Length = 393 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 43/363 (11%), Positives = 112/363 (30%), Gaps = 45/363 (12%) Query: 11 VTKERTRHGKIIYYFR--KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI---NSPR 65 ++K + ++G++ + ++ R + A R I + Sbjct: 17 ISKYKKKNGQVAWMYKGHIATDPRTGEKINTTRRGFSSKQEAQKDYDEYRHQILYGVKKK 76 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRI-SFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 T + L +E+ S+ ++ S +QI+ G I+ + + V+ Sbjct: 77 APDMTFEDLYNEWIAHQR-TSVKASTIAISVRYANNQILPAFGKLKLSNISVPYCQKVVD 135 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG--IRPWTKEDMQQF 182 S + ++ V +Y+ NP P++K + ++KE++ Sbjct: 136 EWHSKYESYDYMRKQTAQILRYGVAMQYIDNNPMEKTLLPRKKEYEKNRKFYSKEELNDL 195 Query: 183 KSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--------------- 225 + + + F L Y+G+R S+ + + + Sbjct: 196 LDAFKDFGNMKQYAFFRLLAYTGMRKSEVLALQWKDIDTFNKELHVNKTLAVDEFGNVII 255 Query: 226 --TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN---------------ATQ 268 + + + L + +L + ++ ++ + Sbjct: 256 QSPKTRASRRVISLDTETLSILNNWKLQQKEEYLKLGYNTSSKEQHVFTTVKNTLYIPNT 315 Query: 269 FSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGA 326 + W + K + + + HG R A++ +AG + + G + + Y Sbjct: 316 VNDWLRYILKKYNLPRITPHGFRHTHASLLLEAGESVKVVQQRLGHENSKVTLDIYAHIT 375 Query: 327 DRI 329 + Sbjct: 376 NNA 378 >gi|218780651|ref|YP_002431969.1| integrase family protein [Desulfatibacillum alkenivorans AK-01] gi|218762035|gb|ACL04501.1| integrase family protein [Desulfatibacillum alkenivorans AK-01] Length = 408 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 54/373 (14%), Positives = 98/373 (26%), Gaps = 45/373 (12%) Query: 14 ERTRHGKIIYY--FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI-NSPRKKPTT 70 + R ++ Y+ +R G++ R A + + ++ T Sbjct: 29 KAKRSKRVRYWITYRLPGGKQRREAVGFSIEDARAAEGKRKAEKKENPRVLKKSPEETMT 88 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV------- 123 + L Y L R E + G + IT + Sbjct: 89 FEDLAKWYLALPKVKGLKSFWR--IEMNLNTFNETFGKTKIKNITALDLEKFQVDGLAQG 146 Query: 124 ---------ESRKHTPSS-------AIQFLTSMRVLFKWAVRQEYV---AINPCLSVERP 164 E +K +S Q LT R + A + V + V+ Sbjct: 147 FKKRTRGSKEEKKEGGASQPASQAYIDQILTVARTMINRAFDSDIVSGETVKVFRRVKNL 206 Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 + R + + + + R Y+G+R + + I Sbjct: 207 QGGNANARDRVLTHDEFERIMANLPAHARPVIATAYYTGMRSGEIFPLTWDKVDLKERVI 266 Query: 225 K----TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280 + K V + + ++L+ P T + K + A KA Sbjct: 267 RLEAADTKDKEPRVVPICNELFEVLSGLPRPIHTNNVFLKKGEPIKK-LRNSLSTAAKKA 325 Query: 281 GVN--------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY-TKGADRIRL 331 + + H R T AG +M G T + Y T AD + Sbjct: 326 NIPFGRKVKNGFTFHDFRHTFNTNMRRAGVPESVIMKITGHSTRAMFDRYNTVDADDAKN 385 Query: 332 GIKNSRRISSVVD 344 + VD Sbjct: 386 AVNIMSSFLQPVD 398 >gi|254479225|ref|ZP_05092570.1| site-specific recombinase, phage integrase family [Carboxydibrachium pacificum DSM 12653] gi|214034826|gb|EEB75555.1| site-specific recombinase, phage integrase family [Carboxydibrachium pacificum DSM 12653] Length = 348 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 45/305 (14%), Positives = 100/305 (32%), Gaps = 45/305 (14%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG--------DFDYRKIT------- 115 L+ ++ Y + + N+ ++ R D + +I Sbjct: 41 LEEFLN-YFSTVKAR--SPNTIKAYAYDLILFFRFLKKRRGKVSDDIPFDEIDISDVDID 97 Query: 116 ----------TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERP 164 ++ R +TP + + + S+R + + R+ + ++ NP +E P Sbjct: 98 LIESVDLNDLYAYLSFVTNERSNTPPARARKVASLRSFYNYLYRKAKVISKNPTQELESP 157 Query: 165 KRKTEGIRPWTKEDMQQFKSFW--SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222 K T E+ ++ + + L GLR S+ + ++ + Sbjct: 158 KLSVRHPIYLTLEESKKLLNSIDGPFKERDYAIITLFLNCGLRVSELVNINLDDIKEDKL 217 Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFK 274 + K T+ L + +K ++ + + + K ++++ K Sbjct: 218 T-VIGKGNKQRTIYLNEACIKAISDYLKVRPKEGVKDKKALFLSKRLKRISVKTVQYLVK 276 Query: 275 AKATKAGV---NKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD-RI 329 A + SAH +R +AT+ G L G V + YT D ++ Sbjct: 277 KHLKHANLEGKKYSAHKLRHTAATLMYRYGNVDIRTLQKLLGHSNVSTTQIYTHVDDSQL 336 Query: 330 RLGIK 334 R + Sbjct: 337 REAVN 341 >gi|315651061|ref|ZP_07904095.1| phage integrase [Eubacterium saburreum DSM 3986] gi|315486651|gb|EFU76999.1| phage integrase [Eubacterium saburreum DSM 3986] Length = 352 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 40/361 (11%), Positives = 102/361 (28%), Gaps = 40/361 (11%) Query: 11 VTKERTRHGKI----IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 V K+ + G Y GH ++ ++ + + + Sbjct: 3 VYKDNNKKGSWFVSCYYKDYVGHKKQKVKRGFTTKKEAQSW--------ERDFLEHYSNQ 54 Query: 67 KPTTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 K L+ Y + L+ ++ I+ G+ IT +R + + Sbjct: 55 PTILFKALVDVYLEDYKAKYKLSSYYVKE-KNIQSHILPYFGETKINNITPNMVRDWLNN 113 Query: 126 RKH------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + + + L ++ + +A + + NPC V+ K T+ + + + Sbjct: 114 LQAKQGNTLSTETKNGILRNLSAILSYACKYYGLGSNPCKLVDALKDNTKKEKIFLTLEQ 173 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----------------IFS 223 + + ++ F+ L ++GLR + + + + Sbjct: 174 YKAFRSNITDIRDKVIFDLLFFAGLRRGELMALTFGDVDMDNKLLHISKTKGYAAGSYVT 233 Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 + T + V LP + + + AG+ Sbjct: 234 TPPKTTTSNRVVTLPGFLIDEIKEYKEHCLDTDAKTSLFSIGKASIEYKKDKYLKLAGLP 293 Query: 284 K-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISS 341 H R + + G + G + TY + + ++++ + Sbjct: 294 YMRIHDFRHSHVALLVELGENPLLIANRLGHSDIKMTLNTYAHLYPNKQ--KELAQKLEN 351 Query: 342 V 342 + Sbjct: 352 L 352 >gi|254780882|ref|YP_003065295.1| site-specific tyrosine recombinase XerC [Candidatus Liberibacter asiaticus str. psy62] gi|254040559|gb|ACT57355.1| site-specific tyrosine recombinase XerC [Candidatus Liberibacter asiaticus str. psy62] Length = 328 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 39/279 (13%), Positives = 89/279 (31%), Gaps = 33/279 (11%) Query: 78 YRKSAHW-GSLAVNSRISFESYFDQII--------RKSGDFDYRKITTKHIRSGVESRKH 128 + ++ L+ + S+E Q + K R+++ IR+ + R+ Sbjct: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 Query: 129 TP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM------ 179 S + L+ ++ K+ +++ + L++ K+ R ++ Sbjct: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 Query: 180 ---QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITV 235 ++ L GLR S++ Q++ ++ +++ Q I V Sbjct: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 Query: 236 ELPDGFMKLLAMTPIGKETF---------FINNDKQKMNATQFSIWFKAKATKAGVNK-- 284 L K + F + +N F + + G+ Sbjct: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 +AH +R AT G + + G + + YT Sbjct: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 >gi|149922734|ref|ZP_01911160.1| Phage integrase [Plesiocystis pacifica SIR-1] gi|149816439|gb|EDM75939.1| Phage integrase [Plesiocystis pacifica SIR-1] Length = 374 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 50/329 (15%), Positives = 95/329 (28%), Gaps = 31/329 (9%) Query: 26 RKGHGR--RIRLPYPHESTFIPAYM-SALTG--------STPKREYINSPRKKPTTLKWL 74 R +G+ R R PH S E P+K+ T Sbjct: 20 RLPNGKSHRERRKSPHSSKAASLRWGRERERYLLVHGPTRRASGEDTAQPKKEVPTFTEF 79 Query: 75 ISEYRK-SAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPS- 131 Y + + S E + I+ GD ++ + + T Sbjct: 80 APRYVEGQVKGNGAKPSHTESIERHLRIHILPAFGDKRLDELEQEDLERFKAKLGETRKN 139 Query: 132 -SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 + T++ L K AV + + P ++R + + + + ++ + F ++ Sbjct: 140 KTINNIQTTLSTLLKAAVAWKVIEEVPVE-IKRLRVVRKKMDFFDFDEFAWLREFAAKAP 198 Query: 191 QPRLAFEFLLYSG---LRCSDSCRAGVQHLQN-----------NIFSIKTQKTGTIITVE 236 + +L G LR + L I T K I + Sbjct: 199 SDGIDLAIVLLGGDAGLRAGEIRGLHWDSLDFQRNRLTVERAEWHGHITTPKHDKIRVLP 258 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSAT 295 + K L P + + + A + +AG+ +K H +R + Sbjct: 259 MTQRLNKALRQLPRECKLVLPQPSGEPLTAGLLDKRLRRVEKRAGLRDKGPHTLRHTFCS 318 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324 A G A + G ++ E Y Sbjct: 319 HLAMRGIPARVIQQLAGHSSLVTTERYMH 347 >gi|69244690|ref|ZP_00602954.1| Phage integrase:Phage integrase, N-terminal SAM-like [Enterococcus faecium DO] gi|257879459|ref|ZP_05659112.1| phage integrase [Enterococcus faecium 1,230,933] gi|257881742|ref|ZP_05661395.1| phage integrase [Enterococcus faecium 1,231,502] gi|257890218|ref|ZP_05669871.1| phage integrase [Enterococcus faecium 1,231,410] gi|260558834|ref|ZP_05831023.1| phage integrase [Enterococcus faecium C68] gi|293560447|ref|ZP_06676939.1| integrase [Enterococcus faecium E1162] gi|294621631|ref|ZP_06700796.1| integrase [Enterococcus faecium U0317] gi|314937844|ref|ZP_07845160.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0133a04] gi|314941335|ref|ZP_07848228.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0133C] gi|314950094|ref|ZP_07853380.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0082] gi|314953752|ref|ZP_07856621.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0133A] gi|314992804|ref|ZP_07858205.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0133B] gi|314997963|ref|ZP_07862859.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0133a01] gi|68196281|gb|EAN10710.1| Phage integrase:Phage integrase, N-terminal SAM-like [Enterococcus faecium DO] gi|257813687|gb|EEV42445.1| phage integrase [Enterococcus faecium 1,230,933] gi|257817400|gb|EEV44728.1| phage integrase [Enterococcus faecium 1,231,502] gi|257826578|gb|EEV53204.1| phage integrase [Enterococcus faecium 1,231,410] gi|260075293|gb|EEW63606.1| phage integrase [Enterococcus faecium C68] gi|291598796|gb|EFF29848.1| integrase [Enterococcus faecium U0317] gi|291605595|gb|EFF35037.1| integrase [Enterococcus faecium E1162] gi|313588024|gb|EFR66869.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0133a01] gi|313592608|gb|EFR71453.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0133B] gi|313594271|gb|EFR73116.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0133A] gi|313599758|gb|EFR78601.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0133C] gi|313642702|gb|EFS07282.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0133a04] gi|313643535|gb|EFS08115.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0082] Length = 379 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 50/376 (13%), Positives = 115/376 (30%), Gaps = 44/376 (11%) Query: 11 VTKERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 + + R Y ++K G+ ++ T A +A + + +K Sbjct: 1 MARLVKRGNSWQYEISYKKDDGKYTKIRKSGFKTKGEAKDAANELEYNLNKGLK-GDRKN 59 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK- 127 L ++ + G+++ + +E I + + + + Sbjct: 60 LLLSDYFEDWMQLYKEGTVSPITYRKYEDTLMNIKKYMPAVLISDLDRVGYQRFLNKYAK 119 Query: 128 -HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR---PWTKEDMQQFK 183 H S+ I+F +R K AV + + +P + + + + + Sbjct: 120 DHVKSTVIKFNNHIRASLKDAVEEGLIPFDPTRKAVIKGKDSLKPKEDKYLDYDQFKSLM 179 Query: 184 SFWSEGSQPRLAFEFLLY----SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------- 232 E + + L+ +G+R ++ + + I KT Sbjct: 180 KLVEENLSAQYSSPMLVLVAGATGMRFAELLGLTWEDIDFEDQIITINKTWNYKLNEWGK 239 Query: 233 -------ITVELPDGFMKLLAMTP-------------IGKETFFINNDKQKMNATQFSIW 272 + + + LL F N +++ S + Sbjct: 240 TKNETSNRKISIDKHTIDLLKKFKINQKELFENFEIKNPHNFVFFNLKNGLVSSNAVSKY 299 Query: 273 FKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRI 329 + K + G+ K + HG+R A+I G + G +++ TY Sbjct: 300 LRKKLKELGIEKQFTLHGLRHTHASILLYQGVNILSVSKRLGHSSLETTMSTYLHIV--R 357 Query: 330 RLGIKNSRRISSVVDS 345 L ++ +I++V DS Sbjct: 358 ELEDQDKEKINTVFDS 373 >gi|294789661|ref|ZP_06754894.1| LOW QUALITY PROTEIN: xylulose-5-phosphate/fructose-6-phosphate phosphoketolase [Simonsiella muelleri ATCC 29453] gi|294482373|gb|EFG30067.1| LOW QUALITY PROTEIN: xylulose-5-phosphate/fructose-6-phosphate phosphoketolase [Simonsiella muelleri ATCC 29453] Length = 350 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 50/350 (14%), Positives = 106/350 (30%), Gaps = 23/350 (6%) Query: 1 MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLP-YPHESTFIPAYMSALTGSTPKRE 59 M+ + + R+G R G R+R + S L + Sbjct: 1 MSKKQSKNNGIYQ---RNGTWYMDIRTPSGERVRRSLGTQDKQKAQELRSKLEH--EFWQ 55 Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119 K ++ + + S + + ++T I Sbjct: 56 QSRLGIKPKKLWDEAALKWLEEKKHEKKS---IDDDISRLRNL-PQLRGIFLDELTRDII 111 Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + +E +K PS+ +++ +R + + R E+ I+ +++ K IR + Sbjct: 112 MAAIEPKKCKPSTKNRYIALVRAIL-YKARDEWGWIDEVPKLKQYKETGGRIRWLKPHEA 170 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITV 235 Q+ + R F L +GLR + + + + K I V Sbjct: 171 QRLIDALPDNF-WRQMAIFSLCTGLRQGNVFGLKWEQVDLARRIAWIYADETKANKAIGV 229 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSA 294 L +++L+ F N ++ KA + H +R A Sbjct: 230 PLNKTAIQILSERLGKHPIFVFTNSVNNRIKELDDRVWERSLKKAQIKNFRWHDLRHTWA 289 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 + G L GW+ ++ Y L ++ + + ++D Sbjct: 290 SWLVQKGVPLLALKEMGGWEKLEMVMRYAH------LATEHLQSHADILD 333 >gi|269796152|ref|YP_003315607.1| site-specific recombinase XerD [Sanguibacter keddieii DSM 10542] gi|269098337|gb|ACZ22773.1| site-specific recombinase XerD [Sanguibacter keddieii DSM 10542] Length = 370 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 54/363 (14%), Positives = 115/363 (31%), Gaps = 34/363 (9%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 RT G + R GRR ++ A + P+ T ++ Sbjct: 4 RRTPSG--RWQVRVKDGRRDVASKTFDTKRSAQAWEAEQKAKLSGGAWVDPKAGRTPVRE 61 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG--VESRKHTPS 131 +I EY + G ++ + ++ ++ G +T + +++ V++ S Sbjct: 62 VIDEYLAT-RPGIVSSKTLLTEHLLLGKVTPALGRLPVSAVTREDVQTDLGVQALGLATS 120 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK----RKTEGIRPWTKEDMQQFKSFWS 187 S ++ + LF ++V + NP + P + + P+T E++++ + Sbjct: 121 SVKRYRGILSALFTYSVARRLRETNPVSGTKLPSGAEGHERTEMAPYTLEELREVAAACM 180 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247 E S FL +GLR + V+ + + + Sbjct: 181 EQSPDGDITLFLGLTGLRWGEMAALRVKDVLEVPRRAIRVSRSAPTGHAIRETTKGGRDR 240 Query: 248 TPIGKETFFINNDKQKMNA--------TQFSIWFKAKATKAGVNK-------SAHGVRKF 292 E + ++ + + K GV+ H +R Sbjct: 241 FVPLVEDVWQIVARRMVGRAPDDLLFVNPSGRIWGGWNWKCGVSWAQHARGRRVHDLRHT 300 Query: 293 SATISADAGATAHELMATYGWKTVDQA----ETYTKGADR---IRLGIKNSRRISSVVDS 345 +AT+ +G + A G T Y ++ +RL + R++ Sbjct: 301 AATLWLSSGVPPKTVQAWLGHSTATMTLDLYAHYLPASEADAGLRLMNE---RLAGGARG 357 Query: 346 DDP 348 D P Sbjct: 358 DRP 360 >gi|237811004|ref|YP_002895455.1| phage integrase family protein [Burkholderia pseudomallei MSHR346] gi|237503562|gb|ACQ95880.1| phage integrase family protein [Burkholderia pseudomallei MSHR346] Length = 349 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 45/351 (12%), Positives = 105/351 (29%), Gaps = 25/351 (7%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 +T G R+ + + +I + TT+ Sbjct: 6 KTPSGTWKATIRRVGWP-TAAKTFRTKRDAEDWARRTEDEMVRGVFIQRAPSEKTTVADA 64 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134 + Y + +++ + ++ G + +T + + R + Sbjct: 65 LDRYEREIVPTK-KASTQRREGARIRELKANFGKYSLAAVTPDLVSRYRDDRLARGKANN 123 Query: 135 QF---LTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 L + LF A+++ ++ NP ++ +P R ++ + + + + Sbjct: 124 TVRLELALLGHLFNVAIKEWHIGLIFNPVANIRKPSPGEGRNRRLSESEQAKLLATVDQH 183 Query: 190 SQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL-- 245 S P L + L +G+R S+ + ++ T +P + L Sbjct: 184 SNPMLGWIVRLAIETGMRQSEILGLRRGQVDLERRVVRLTDTKNNAARTVPLTKLAALVL 243 Query: 246 --------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSATI 296 F K A QF+ + + G ++ H +R + + Sbjct: 244 QNALGNPVRPIDTDLVFFGEPGRDGKRRAYQFTKVWNGLKKRTGLIDFRFHDLRHEAVSR 303 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347 +AG T E+ + G K++ YT ++ + S Sbjct: 304 LVEAGLTDQEVASISGHKSMQMLRRYTHL-----RAEDLVSKLDAFASSRR 349 >gi|258590894|emb|CBE67189.1| Tyrosine recombinase xerC [NC10 bacterium 'Dutch sediment'] Length = 349 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 48/305 (15%), Positives = 92/305 (30%), Gaps = 55/305 (18%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-------------------------GD 108 I Y + + ++ ++ Q GD Sbjct: 28 IEAYLLYLQAERAASPHTLKNYAIDLQQFRTFLRAGESSQLEPTVSAVERPVVRDTGRGD 87 Query: 109 FDYRKITTKHI--------RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 +R+I I + + R SS + L ++R F++ R+ VA NP Sbjct: 88 ALHRQIKPGEIDVLAIRAFVADLHRRGIARSSIARKLATLRSFFRYLCREGVVAANPAKL 147 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQH 216 V PK T +++ + + E G++ E SG+R S+ V+ Sbjct: 148 VSTPKLPKRLPAYLTVDEVDRLLASPGEQDLPGARDLAILELFYASGIRLSELTGLDVRD 207 Query: 217 LQNNIFSIKTQKTG-TIITVELPDGFMKLLAMTPIGKETFFI--------------NNDK 261 + ++ + G V + + L + N Sbjct: 208 VDIREGLVRVKGKGGKERIVPVGSKAIVALRRYLDRRSDLIHESKRVAPESVALFLNRQG 267 Query: 262 QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 +++ + ++GV + HG+R AT AGA + G + Sbjct: 268 GRLSQRSIARIVLKHLNQSGVGPKITPHGLRHSYATHLLQAGADLRAIQELLGHSRLSTT 327 Query: 320 ETYTK 324 + YT Sbjct: 328 QRYTH 332 >gi|291535839|emb|CBL08951.1| Site-specific recombinase XerD [Roseburia intestinalis M50/1] Length = 312 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 42/286 (14%), Positives = 91/286 (31%), Gaps = 28/286 (9%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129 LK I++Y + L + ++++ +Q I G+ + K + R + Sbjct: 3 LKEEINKYLNYCKFQKELKDKTIKAYKADLEQFITVIGENNPDK-EVLNAYLVYLHRMYK 61 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG---------------IRPW 174 + + + S++ LF + +E + INP V+ R+ Sbjct: 62 QKTVKRKIASVKALFHYLEEEELIEINPFHKVKTKFREEVILPKIIPRDIIEQLLNHLYK 121 Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTII 233 + + + + E L +GLR S+ C +++ K G Sbjct: 122 ERSIKEYSEWRKKIILRDIAVVETLFSTGLRISELCHLQNKYVDLKNGVLCIQGKGGKER 181 Query: 234 TVELPD--------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA--TKAGVN 283 +++ + + K + FF+N ++ A +A +N Sbjct: 182 YLQIGNNDVLSILNAYKKSFEDEIKKQGYFFVNRYGNALSEQSARSMIHKYAGEIQADIN 241 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + H R AT + + G ++ + YT Sbjct: 242 ITPHMFRHSFATYLMEEDVNIRYIQKMLGHASITTTQIYTYVTTEK 287 >gi|52081940|ref|YP_080731.1| lambda integrase-like, N-terminal,DNA breaking-rejoining enzyme, catalytic core [Bacillus licheniformis ATCC 14580] gi|52787324|ref|YP_093153.1| YdcL [Bacillus licheniformis ATCC 14580] gi|52005151|gb|AAU25093.1| Lambda integrase-like, N-terminal,DNA breaking-rejoining enzyme, catalytic core [Bacillus licheniformis ATCC 14580] gi|52349826|gb|AAU42460.1| YdcL [Bacillus licheniformis ATCC 14580] Length = 364 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 52/340 (15%), Positives = 96/340 (28%), Gaps = 32/340 (9%) Query: 11 VTKERTRHGKIIYYF------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64 V K++ R YYF R G ++I+ S A + + E + Sbjct: 3 VYKDKERG---TYYFIISYTNRNGEYKQIKRRGFKSSGEAK---RAEAETLLRLETDDGE 56 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 + T +++ EY K A + + +I + G I ++ I Sbjct: 57 NEDNPTFEFVAKEYLKWYKKRRKASSYLKTSSIINTHLIPRFGSKKINNIRSRDIMRFQN 116 Query: 125 SRKHTPSSA--IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + A + + +F +A++QEY NP + + + D + Sbjct: 117 DLLDRYAVAHVKKIHQVLSAVFNFAIKQEYTKDNPARLAGNVDIEEDKHINYWTLDEFKA 176 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242 + F L YSG+R + + + +I KT V P Sbjct: 177 FIQHVDDQLYYALFMTLYYSGMRKGELLALTWGDIDFDSNTINIDKTVYNRIVTKPKTTS 236 Query: 243 KLLAMTPIGKETF----------------FINNDKQKMNATQFSIWFKAKATKAGVNK-S 285 + + ++ T + A V K Sbjct: 237 SIRKIMMPKHVMRLLAQLKAKTKTKMTYVVFGEFHDHISTTTLDRKYAEYVKAAKVKKIR 296 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 H R A+ + + G K V Y+ Sbjct: 297 LHDFRHSHASYLINRNTIPSVVAKRLGHKDVGTTLNIYSH 336 >gi|282919848|ref|ZP_06327580.1| integrase [Staphylococcus aureus subsp. aureus C427] gi|282316486|gb|EFB46863.1| integrase [Staphylococcus aureus subsp. aureus C427] Length = 345 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 45/329 (13%), Positives = 98/329 (29%), Gaps = 24/329 (7%) Query: 19 GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP--RKKPTTLKWLIS 76 GK Y K G+R R A + K + S TL Sbjct: 8 GKKWQYEFKHEGKRYRKKGFRTK------REANSAGLDKLNELRSGFNIDNYITLAEYFE 61 Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVES--RKHTPSSA 133 + K+ + N+ + + I + G + KI + + + ++H + Sbjct: 62 NWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDYSKEHAKETI 121 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVER----PKRKTEGIRPWTKEDMQQFKSFWSEG 189 + ++R A+ + NP V P + + E + Sbjct: 122 RKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEILKDHVRKKR 181 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-------KTGTIITVELPDGFM 242 ++ LA ++ +G R S + ++H+ +I I M Sbjct: 182 TRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTDTSPRYISIAKSDMKHIM 241 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301 +++ I + + +N + K+ + ++H +R + G Sbjct: 242 DVISTFAISYDGYIFKKAGSIINLQAINNALKSACRVNNIPIITSHALRHTHCSYLLAKG 301 Query: 302 ATAHELMATYGWKTVD-QAETYTKGADRI 329 + H + G K + Y+ + Sbjct: 302 VSIHYISKRLGHKNIAITTSVYSHLLEEK 330 >gi|269102990|ref|ZP_06155687.1| phage integrase family protein [Photobacterium damselae subsp. damselae CIP 102761] gi|268162888|gb|EEZ41384.1| phage integrase family protein [Photobacterium damselae subsp. damselae CIP 102761] Length = 291 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 42/271 (15%), Positives = 86/271 (31%), Gaps = 18/271 (6%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHT 129 +L ++ + ++ +I + D +TT ++ H+ Sbjct: 10 DYLYEQHLTHLTLQGKRPATIDAYSRALRRITHQL-DKSPDTLTTDDLKRYFTQLIKTHS 68 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 S+ ++ FK +++++ +N P T ++ + S+ Sbjct: 69 WSTVKIDRNGLQFFFKHVLQRDWEWLNIVK----PPHVKTLPDILTPSEVSLLINATSQ- 123 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAM 247 + ++ F L GLR + V + ++ I+ K G + LP + L Sbjct: 124 LRYQVFFLTLYSLGLRLGEGLNLTVGDIDSHRMLVHIRQGKGGKDRFIPLPRRTLYALRY 183 Query: 248 TPIGK------ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISAD 299 N + M+ KA G+ KS H +R AT + Sbjct: 184 YWQTHKNSRYLFPSQFNLNHTVMDRGGVQKAMKAVIKSCGITKSISPHNLRHSYATHLLE 243 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIR 330 G + G +++ YT D R Sbjct: 244 RGLDLRSVQHLLGHNSLNATAKYTHLTDISR 274 >gi|189184607|ref|YP_001938392.1| putative integrase [Orientia tsutsugamushi str. Ikeda] gi|189181378|dbj|BAG41158.1| putative integrase [Orientia tsutsugamushi str. Ikeda] Length = 399 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 54/352 (15%), Positives = 113/352 (32%), Gaps = 29/352 (8%) Query: 2 TPSLRLPPFVTKERTRHGKIIYYFRKGHGR---RIRLPYPHESTFIPAYMSALT------ 52 T ++ P + +R G+ F K + ++ + + + A A Sbjct: 27 TIKDKIEPGLQLRISRSGRKTCSFEKKFRKEGIKMTIGVFPDLSIKEARKKARELKRLMA 86 Query: 53 -GSTPKREYINSPRKKP---------TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI 102 G P+ E + T K L +Y + + + + Sbjct: 87 KGIDPREEKRQQQIAEDEKRLKARQDITFKELCYKYIEEY-AKIYTIYWQKDTARIHNYA 145 Query: 103 IRKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 I + I ++A QFL ++ +F A++ E + NP L Sbjct: 146 KPLF-LKKISDIKSNDIEQIFNDISKDGKYATANQFLITLSSIFNKAIKWELIDRNPTLK 204 Query: 161 -VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219 + + E + + R LY+G R ++ ++ Sbjct: 205 IDKHKMQARERRLSYDEMSKFLHVLCGEATPLIRDFALLALYTGARKTNVLEMEWDNIDF 264 Query: 220 --NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW--FKA 275 I+ I K G + L D +++L + ++ ++ + + + + + Sbjct: 265 ARKIWHIPKTKNGKAQNIPLTDEIIEILQARKLTSKSKWVLSTDKSKSGHLEYPYRGWYK 324 Query: 276 KATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 KAG+ H +R+ A+ AD GA + + A + YTK + Sbjct: 325 ICKKAGIKNLRIHDLRRTFASCMADEGAGQYIISAALNHSDIKSTSIYTKVS 376 >gi|332042981|gb|EGI79179.1| integrase family protein [Lacinutrix algicola 5H-3-7-4] Length = 296 Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 39/280 (13%), Positives = 94/280 (33%), Gaps = 27/280 (9%) Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVE 124 +LK + Y + + + + ++ + + + IRS + Sbjct: 1 MSLKAFVD-YLELE--RNYSQLTIKAYSKDIEAFQKYLKKNHETTTIKTANYSQIRSWIV 57 Query: 125 SR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 K + + + ++++ +K+ ++ E + NP + K + P+++ ++ Sbjct: 58 QLVESKISNRTINRKISALNTYYKFLLKIEQLKTNPLAKHKALKTSKKIQVPFSQTEVAM 117 Query: 182 -----FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITV 235 +G + +L E +G+R + ++ + + K V Sbjct: 118 AIDDLQHENNFKGLRNKLIIELFYSTGIRRIELVNLKIKDINQANKTLKVLGKRNKERYV 177 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWFKAKATKA--GVNK 284 L D K + ++ D++ K+ T + A V K Sbjct: 178 PLLDSVNKTINQYIEKRQELKNIKDQEYLFLTKRGVKIYETLVYRIINEYFSLASNKVKK 237 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 S H +R AT + GA + + G ++ + YT Sbjct: 238 SPHILRHSFATHLLNQGADLNAVKELLGHSSLAATQVYTH 277 >gi|319899487|ref|YP_004159584.1| integrase/recombinase XerD [Bartonella clarridgeiae 73] gi|319403455|emb|CBI77026.1| integrase/recombinase XerD [Bartonella clarridgeiae 73] Length = 312 Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 41/310 (13%), Positives = 100/310 (32%), Gaps = 42/310 (13%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVES 125 +I + + +V + +++ K + + + ++ S +++ Sbjct: 4 SAVIDRFLEMMSAERGASVRTLFAYQHDLQWAQNKLSSYSLSFFSAQREDLINLLSLMQT 63 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR------------- 172 +S + L+++R F++ + +P ++ P++ + Sbjct: 64 AGCAATSQARRLSTLRQFFQFLYAEGLRGDDPSSDIDSPRQGRPLPKIISEDAVTKLLDF 123 Query: 173 -PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTG 230 + + + + ++ E L +GLR S+ VQ ++ I K Sbjct: 124 AQLETDQAEYGSQEYFRALRFQVLLEMLYATGLRISELVSLPVQAVRRKEQFILVRGKGE 183 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ---------FSIWFKAKATKAG 281 V L + ++L+ + ++ A + K A +AG Sbjct: 184 KERVVLLSEKARQILSKWLVLRDQGKDAKSFYLFPARSSTGYIARQFVARGLKDLAKRAG 243 Query: 282 V---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338 + N S H +R A+ GA + G + + YT + R Sbjct: 244 IQSENFSPHVLRHAFASHLLQNGADLRAVQHLLGHCDISTTQVYTHVLE---------AR 294 Query: 339 ISSVVDSDDP 348 + +V+ P Sbjct: 295 LHRLVNEHHP 304 >gi|301162387|emb|CBW21932.1| putative tyrosine recombinase [Bacteroides fragilis 638R] Length = 308 Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 32/261 (12%), Positives = 80/261 (30%), Gaps = 15/261 (5%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI----RSGVESRKHTPSSA 133 Y + ++++ +++ YF + D +T + I V+ + + + Sbjct: 36 YLELLEQKRYSLSTIKAYKIYFSDFMEYHKGQDLDLLTVEDINSYMLHMVKEKHISATQQ 95 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193 + +++ ++ + + + ++E+M+ + R Sbjct: 96 NMRINAIKFYYEKVRKGKRQYYGGIARAKE---YKALPEVLSREEMKS-IFAQLSNRKHR 151 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----ELPDGFMKLLAMT 248 + +GLR S+ Q + + I+ G +L + Sbjct: 152 CMISLIYSAGLRRSELLNLTPQDIISERMLIRIAGKGKKCRYSLLSEKLLNELRDYYREY 211 Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHE 306 K F ++ + + K A KAG+ H +R AT + G Sbjct: 212 RPQKWLFEGEQAGEQYSPSALVKILKEAARKAGIKHRVHLHMLRHTFATHLLEQGTDLRT 271 Query: 307 LMATYGWKTVDQAETYTKGAD 327 + G + Y ++ Sbjct: 272 IQELMGHTDIKTTAIYLHVSN 292 >gi|225867105|ref|YP_002752483.1| site-specific recombinase, phage integrase family [Bacillus cereus 03BB102] gi|225786133|gb|ACO26350.1| site-specific recombinase, phage integrase family [Bacillus cereus 03BB102] Length = 322 Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 42/269 (15%), Positives = 82/269 (30%), Gaps = 22/269 (8%) Query: 83 HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTS 139 + + F +R+ IT KH++ + P++ +++ Sbjct: 38 QAEGFRKRTIDDYTKLFRYFMRELNIDRVEIITAKHVQMYINKLISRDLAPATVNIRISA 97 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPRLA 195 ++ +FK Q Y NP + + + I +++ G + A Sbjct: 98 LKSIFKRLHEQGYTKSNPAIDFVKLRTDEAPIFTLNNNQIKRLFRVVDKTTYAGYRDYCA 157 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPDGFMKLLAMTPIG 251 +L+ GLR ++ + V L + +I K V + + L M Sbjct: 158 MLLMLHCGLRVNEVNQLEVNDLDFDNLTIMLSGAKNKNRKTRAVPMTKRVAEELRMLIEE 217 Query: 252 KETFFINNDKQKMNATQ-------FSIWFKAKATKAGVNK----SAHGVRKFSATISADA 300 +F + AG++K S H +R AT Sbjct: 218 SRDYFEVTTNVFLTHDGNSIDNDLLRKRMYRYGQFAGLSKECRPSPHSLRHTFATNFLRN 277 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329 G + + LM G + Y + D Sbjct: 278 GGSVNALMRIMGHADITTTMRYVRLNDEA 306 >gi|148268476|ref|YP_001247419.1| phage integrase family protein [Staphylococcus aureus subsp. aureus JH9] gi|150394539|ref|YP_001317214.1| phage integrase family protein [Staphylococcus aureus subsp. aureus JH1] gi|257793278|ref|ZP_05642257.1| integrase [Staphylococcus aureus A9781] gi|258419785|ref|ZP_05682748.1| phage integrase [Staphylococcus aureus A9719] gi|147741545|gb|ABQ49843.1| phage integrase family protein [Staphylococcus aureus subsp. aureus JH9] gi|149946991|gb|ABR52927.1| phage integrase family protein [Staphylococcus aureus subsp. aureus JH1] gi|257787250|gb|EEV25590.1| integrase [Staphylococcus aureus A9781] gi|257844196|gb|EEV68582.1| phage integrase [Staphylococcus aureus A9719] gi|315128690|gb|EFT84692.1| phage integrase family protein [Staphylococcus aureus subsp. aureus CGS03] gi|329728069|gb|EGG64512.1| site-specific recombinase, phage integrase family [Staphylococcus aureus subsp. aureus 21172] Length = 345 Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 45/329 (13%), Positives = 99/329 (30%), Gaps = 24/329 (7%) Query: 19 GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP--RKKPTTLKWLIS 76 GK Y K G+R R A + K + S TL+ Sbjct: 8 GKKWQYEFKYEGKRYRKKGFRTK------REANSAGLDKLNELRSGFNIDNYITLEEYFE 61 Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVES--RKHTPSSA 133 + K+ + N+ + + I + G + KI + + + ++H + Sbjct: 62 NWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDYSKEHAKETI 121 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVER----PKRKTEGIRPWTKEDMQQFKSFWSEG 189 + ++R A+ + NP V P + + E + Sbjct: 122 RKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEILKDHVRKKR 181 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-------KTGTIITVELPDGFM 242 ++ LA ++ +G R S + ++H+ +I I M Sbjct: 182 TRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTDTSPRYISIAKSDMKHIM 241 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAG 301 +++ I + + +N + K+ + ++H +R + G Sbjct: 242 DVISTFAISYDGYIFKEAGSIINLQAINNALKSACRVNNIPIITSHALRHTHCSYLLAKG 301 Query: 302 ATAHELMATYGWKTVD-QAETYTKGADRI 329 + H + G K + Y+ + Sbjct: 302 VSIHYISKRLGHKNIAITTSVYSHLLEEK 330 >gi|187476668|ref|YP_784691.1| site-specific tyrosine recombinase XerC [Bordetella avium 197N] gi|115421254|emb|CAJ47759.1| tyrosine recombinase [Bordetella avium 197N] Length = 325 Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 39/299 (13%), Positives = 83/299 (27%), Gaps = 42/299 (14%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQI--IRKSGDFDYRKITTKHIRSGVESRKH--- 128 + ++ + + ++ ++ + + + + ++ HIR + Sbjct: 8 LEDWLQHLQTQRRYSSHTLAAYRHDLESLAALATQAGLALQDLSVSHIRQQIARLHAQGL 67 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--- 185 P S + L + R ++W +A NP V PK + + + Q Sbjct: 68 GPRSLARRLAAWRGFYQWWAPHIGLARNPVAGVRAPKAPRALPKALSVDQAQAMLDHAPA 127 Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-------------KTQK 228 + E L SGLR S+ + ++ K Sbjct: 128 QLSTDPVSLRDHAISELLYSSGLRLSELVSLDTHYHRHTGSEEPAGWLNRAEAEVVVLGK 187 Query: 229 TGTIITVELPDGFMKLLAMTPI-------------GKETFFINNDKQKMNATQFSIWFKA 275 G V + + L F+ +++ + Sbjct: 188 GGKRRIVPVGSAALAALDKWLQARPTLLSAATPAADSYALFLGARGARISPRVVQLQLAR 247 Query: 276 KATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 A +AGV H +R A+ + + G + + YT+ D L Sbjct: 248 LAQQAGVPAHVHPHVLRHSFASHVLQSAQDLRAVQELLGHANIATTQVYTR-LDFQHLA 305 >gi|160890772|ref|ZP_02071775.1| hypothetical protein BACUNI_03217 [Bacteroides uniformis ATCC 8492] gi|156859771|gb|EDO53202.1| hypothetical protein BACUNI_03217 [Bacteroides uniformis ATCC 8492] Length = 376 Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 53/306 (17%), Positives = 102/306 (33%), Gaps = 25/306 (8%) Query: 35 LPYPHESTFIPAY--MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSR 92 L + AY SAL + PK+ SP P Y ++ + ++ Sbjct: 61 LSGFFDRHVETAYIDYSALKNTQPKKSGKTSPAIPPG--------YAETLRQLRYSEHTV 112 Query: 93 ISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAV 148 ++ +YF + + + R I + I + + ++R + + S++ F Sbjct: 113 RAYTTYFKEFQQYFAGRNLRYIRLEEINAYIVHLIDTRGISSCQQNLRINSIKFYF---- 168 Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208 + C V+R KR+ +KE+++ + F L +GLR S+ Sbjct: 169 EKVLGLERKCYEVKRAKRERTLPDVLSKEEIKSILDATGPDIRLFCMFSLLYSAGLRISE 228 Query: 209 SCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMT---PIGKETFFINNDKQK 263 + + ++ K L ++ L +E F + Sbjct: 229 LLDLKPHDINVSRSLIRVRQGKGRKDRYTLLSKPLVRKLTEYAKLYKPQEWLFERYKGEP 288 Query: 264 MNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321 + S K A +AG+ K H +R AT + G + G + E Sbjct: 289 FTESIVSKKLKEAAKEAGITKRVYPHLLRHSFATHLIEQGTDLKIVKELLGHNQLKTTEM 348 Query: 322 YTKGAD 327 Y +D Sbjct: 349 YVHISD 354 >gi|86741839|ref|YP_482239.1| tyrosine recombinase XerD [Frankia sp. CcI3] gi|86568701|gb|ABD12510.1| Tyrosine recombinase XerD [Frankia sp. CcI3] Length = 443 Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 50/334 (14%), Positives = 92/334 (27%), Gaps = 56/334 (16%) Query: 68 PTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGV 123 T +I Y LA NS +++ + G + + Sbjct: 86 RGTPAGVIERYLHHLEGERGLARNSVLAYRRDLRRYCDHLSACGLPSLDAVGEAEVAGFA 145 Query: 124 ESRKHT--------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 + +S + L ++R L ++A + V + V P + + Sbjct: 146 AVLRTGDDTHPPLAAASVARMLVAVRSLHRFAADEGDVPEDVSRPVRPPTPPRRLPKALS 205 Query: 176 KEDMQQFKSFWS-----------------------------EGSQPRLAFEFLLYSGLRC 206 + + + + + E L +G R Sbjct: 206 IDQVVAVLAAAAGAPPPGSPPPSGRPQPSGRPQPVEPAEAVRRLRATALLELLYGTGARI 265 Query: 207 SDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM- 264 S++ V L S++ K G V L + +A + Sbjct: 266 SEAVGLDVDDLDLEAASVRLHGKGGRDRIVPLGRYAIAAVADYLRVGRPTLVAPRSGPAV 325 Query: 265 ---------NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWK 314 + + A AGV S H +R AT D GA + G Sbjct: 326 FLSRRGNRLSRQSAWSVLRTAALAAGVEGVSPHVLRHSFATHLLDGGADVRVVQELLGHA 385 Query: 315 TVDQAETYT-KGADRIRL--GIKNSRRISSVVDS 345 +V + YT DR+R + R + + + S Sbjct: 386 SVSTTQIYTLVTVDRLREVYAASHPRALGAALGS 419 >gi|300813238|ref|ZP_07093603.1| site-specific tyrosine recombinase XerC [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512645|gb|EFK39780.1| site-specific tyrosine recombinase XerC [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 326 Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 42/300 (14%), Positives = 97/300 (32%), Gaps = 47/300 (15%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK--------------SGDFDYRKITT 116 L + Y S+ + N+ + +R + D K+ Sbjct: 7 LDDFLD-YLSSS--KGHSENTIKEYYYDLRIFLRYMILRKTNFYDNVKSLDEVDIDKVDE 63 Query: 117 ------------KHIRSGVESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVER 163 +I + RK + S + ++++R F + + + + INP SV+ Sbjct: 64 DLLKAINKQDIYAYISYLDKERKLSNKSKYRKISAVRAFFDYLTNKIDLLKINPSESVDL 123 Query: 164 PKRKTEGIRPWTKEDMQQFKS-------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216 PK + + ++ L G+R S+ + + Sbjct: 124 PKIEKSLPIYLNLDQAINLLKTIENSKENDFYRTRDYCICTLFLNCGMRLSELSQINISS 183 Query: 217 LQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF-----FINNDKQKMNATQFSI 271 +++ + K + L + + + + + FI+ K++M+ Sbjct: 184 IKDEMIR-VLGKGNKERQIYLNNACIYSIKNYLMHRPKVSTDALFISMRKKRMSNRSIQH 242 Query: 272 WFKAKATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD 327 + +G++ + H +R +AT+ G A L G +++ + YT D Sbjct: 243 MIEKHIRNSGLDPNKYTVHKLRHTAATLMYQYGNADIKSLQEILGHESITTTQIYTHVND 302 >gi|305681404|ref|ZP_07404211.1| site-specific tyrosine recombinase XerC [Corynebacterium matruchotii ATCC 14266] gi|305659609|gb|EFM49109.1| site-specific tyrosine recombinase XerC [Corynebacterium matruchotii ATCC 14266] Length = 331 Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 42/291 (14%), Positives = 77/291 (26%), Gaps = 26/291 (8%) Query: 71 LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGVESR 126 L+ I+++ + H + + + S R DF + + + Sbjct: 40 LQEAIADFAEHLHLVVGRSPATVAGYRSDLIDFCRHAHTFEDFTLVNLRAWLGAAVDAGK 99 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + W RQ Y+ N + PK T + Sbjct: 100 SRATIARRAAAAR--SFSSWCERQGYLDTNVAARLAVPKSGRSLPTVVTPTAAETLMVSS 157 Query: 187 SEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELPDG 240 + + E L +G+R S+ C + + T K V D Sbjct: 158 QATTEPEYLRDTAMLELLYATGIRVSELCGIDLADVNYSRNTVKVTGKGNKQRVVPFGDP 217 Query: 241 FMKLLAMTPIGKETFFINNDKQKMN------------ATQFSIWFKAKATKAGVN-KSAH 287 L +N K N + GV+ H Sbjct: 218 AASALKAWRDHGRPHLLNPKKPAHNALFLGARGGRIDPRMVRTVVARAGEQLGVDGLGPH 277 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337 +R +AT D GA + G ++ + YT + R++ + Sbjct: 278 SLRHSAATHMLDGGADLRVVQELLGHSSLQTTQIYTHVSTTRLKQAYNQAH 328 >gi|18479027|gb|AAL73390.1|AF416734_1 site-specific recombinase [Pseudomonas fluorescens] Length = 298 Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 34/278 (12%), Positives = 88/278 (31%), Gaps = 22/278 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRK-----SGDFDYRKITT-KHIRSGVESRK 127 + Y + ++ ++ ++ ++++ G + I + + + + + Sbjct: 5 LDAYCEHLRSERQVSPHTLSAYRRDLEKVVGWCQKQNIGSWAALDIQRLRSLIARLHQQG 64 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + S + L+++R L+ + R+ +P + PK + + + Q Sbjct: 65 QSSRSLARLLSAVRGLYHYLNREGLCDHDPATGLAPPKGERRLPKTLNTDRALQLLEGAV 124 Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFM 242 E + + E SGLR S+ + L + K + + Sbjct: 125 EDDFLAQRDQAILELFYSSGLRLSELTGLNLDQLDLADGMVQVLGKGSKTRLLPVGRKAR 184 Query: 243 KLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSA 294 + L + F++ +++ + KA + G N H + A Sbjct: 185 EALEQWLALRALTNPADDAVFVSQQGKRLGPRAIQLRVKAAGERELGQNLHPHML-HSFA 243 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 + ++ + G + + YT D L Sbjct: 244 SHLLESSQDLRAVQELLGHSDIKTTQIYTH-LDFQHLA 280 >gi|15924992|ref|NP_372526.1| integrase [Staphylococcus aureus subsp. aureus Mu50] gi|49484247|ref|YP_041471.1| integrase [Staphylococcus aureus subsp. aureus MRSA252] gi|118725054|ref|YP_908790.1| integrase [Staphylococcus phage phiNM3] gi|156980319|ref|YP_001442578.1| integrase [Staphylococcus aureus subsp. aureus Mu3] gi|253729788|ref|ZP_04863953.1| phage integrase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|255006790|ref|ZP_05145391.2| integrase [Staphylococcus aureus subsp. aureus Mu50-omega] gi|258434312|ref|ZP_05688713.1| integrase [Staphylococcus aureus A9299] gi|297589939|ref|ZP_06948579.1| integrase [Staphylococcus aureus subsp. aureus MN8] gi|14247775|dbj|BAB58164.1| integrase [Staphylococcus aureus subsp. aureus Mu50] gi|49242376|emb|CAG41088.1| integrase [Staphylococcus aureus subsp. aureus MRSA252] gi|104641819|gb|ABF73161.1| integrase [Staphylococcus phage phiNM3] gi|156722454|dbj|BAF78871.1| integrase [Staphylococcus aureus subsp. aureus Mu3] gi|253726523|gb|EES95252.1| phage integrase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|257849260|gb|EEV73241.1| integrase [Staphylococcus aureus A9299] gi|269941477|emb|CBI49874.1| integrase [Staphylococcus aureus subsp. aureus TW20] gi|297577067|gb|EFH95781.1| integrase [Staphylococcus aureus subsp. aureus MN8] Length = 345 Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 45/329 (13%), Positives = 99/329 (30%), Gaps = 24/329 (7%) Query: 19 GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP--RKKPTTLKWLIS 76 GK Y K G+R R A + K + S TL+ Sbjct: 8 GKKWQYEFKHEGKRYRKKGFRTK------REANSAGLDKLNELRSGFNIDNYITLEEYFE 61 Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVES--RKHTPSSA 133 + K+ + N+ + + I + G + KI + + + ++H + Sbjct: 62 NWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDYSKEHAKETI 121 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVER----PKRKTEGIRPWTKEDMQQFKSFWSEG 189 + ++R A+ + NP V P + + E + Sbjct: 122 RKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEILKDHVRKKR 181 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-------KTGTIITVELPDGFM 242 ++ LA ++ +G R S + ++H+ +I I M Sbjct: 182 TRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTNTSPRYISIAKSDMKHIM 241 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301 +++ I + + +N + K+ + ++H +R + G Sbjct: 242 DVISTFAISYDGYIFKEGGSIINLHAINNALKSACRVNNIPIITSHALRHTHCSYLLAKG 301 Query: 302 ATAHELMATYGWKTVD-QAETYTKGADRI 329 + H + G K + Y+ + Sbjct: 302 VSIHYISKRLGHKNIAITTSVYSHLLEEK 330 >gi|331697596|ref|YP_004333835.1| Tyrosine recombinase xerC [Pseudonocardia dioxanivorans CB1190] gi|326952285|gb|AEA25982.1| Tyrosine recombinase xerC [Pseudonocardia dioxanivorans CB1190] Length = 307 Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 46/282 (16%), Positives = 88/282 (31%), Gaps = 27/282 (9%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126 ++ + + + N+ ++ + + + G D + + V + Sbjct: 8 VERAVDAFMAHLAVERGSSPNTLRAYGNDLRRYVAHLRERGVDDLAAVQEADVSGFVAAL 67 Query: 127 KHTPSSAIQFLTS-----MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + P+ + +R L ++A R V + +V P R T ++++Q Sbjct: 68 RSGPAPLAASSAARALAAVRGLHRFAARDGLVDDDVSRAVTPPATARRLPRTLTVDEVEQ 127 Query: 182 FKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVE 236 + G + R E L +G R S++ V L ++ K G V Sbjct: 128 LLAGCIGDGPTGLRDRALLELLYSTGARISEAVGIDVDDLDAESRTVLLHGKGGKQRVVP 187 Query: 237 -----------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--N 283 LA G +N +++ + A AGV Sbjct: 188 VGRPALAAVDAWLVRGRPALASRGRGSPALLLNARGARLSRQSAWHVLRGAAEVAGVRAE 247 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 S H +R AT GA + G +V + YT Sbjct: 248 VSPHTLRHCFATHLLSGGADVRVVQELLGHASVATTQIYTHV 289 >gi|296444917|ref|ZP_06886879.1| integrase family protein [Methylosinus trichosporium OB3b] gi|296257585|gb|EFH04650.1| integrase family protein [Methylosinus trichosporium OB3b] Length = 430 Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 50/380 (13%), Positives = 100/380 (26%), Gaps = 46/380 (12%) Query: 10 FVTKERTRHGKIIYYFRKGHGRRIRLPYPH--ESTFIPAYMSALTGSTPKREYINSPRK- 66 FV + R G R RR+ L + + + + Sbjct: 42 FVVEYRPHGGG-----RSVAKRRVTLGKTTQLTPEQARRAAADMLAQVRLGADPAAEKAS 96 Query: 67 --KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 + T+ LI + G L ++ S+ + D + G +T + + Sbjct: 97 HREALTVAGLIEAFEAEHVAGKLKDSTGRSYRAGLDALKGAHGSLKAEALTRGQVAALHA 156 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW---------- 174 + T +A + L + +F W +++ V + E + K + + Sbjct: 157 KMRATRYAANRALATWSKMFAWGMKRGLVPKGDNPAREIDRYKEDKRERFLTSEELARLG 216 Query: 175 ---------------------TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213 K + A L+ +G R + A Sbjct: 217 DALREGETSGLVYEVDESKPKAKHAPKLENRRVKLDPLAAGAIRLLILTGARLREILDAQ 276 Query: 214 VQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN--ATQFSI 271 + + + + T + + E K Sbjct: 277 WSQVDSERGILFLSDSKTGRKSIYLSAAAQAVLANLPKIEGNPHVIAGAKDGEPRADLKK 336 Query: 272 WFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRI 329 + A AG+ H +R A++ A A + G Y AD + Sbjct: 337 PWSAVKRAAGLEGVRLHDLRHSFASVGAGASLGLPIIGKLLGHTQAATTARYAHLDADPL 396 Query: 330 RLGIKNSRR-ISSVVDSDDP 348 R + I++ +D P Sbjct: 397 RRAVDTIGATIAAAMDGGKP 416 >gi|758229|emb|CAA57755.1| integrase [Staphylococcus phage phi13] Length = 345 Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 45/329 (13%), Positives = 98/329 (29%), Gaps = 24/329 (7%) Query: 19 GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP--RKKPTTLKWLIS 76 GK Y K G+R R A + K + S TL Sbjct: 8 GKKWQYEFKHEGKRYRKKGFRTK------REANSAGLDKLNELRSGFNIDNYITLAEYFE 61 Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVES--RKHTPSSA 133 + K+ + N+ + + I + G + KI + + + ++H + Sbjct: 62 NWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDYSKEHAKETI 121 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVER----PKRKTEGIRPWTKEDMQQFKSFWSEG 189 + ++R A+ + NP V P + + E + Sbjct: 122 RKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEILKDHVRKKR 181 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-------KTGTIITVELPDGFM 242 ++ LA ++ +G R S + ++H+ +I I M Sbjct: 182 TRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTDTSPRYISIAKSDMKHIM 241 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301 +++ I + + +N + K+ + ++H +R + G Sbjct: 242 DVISTFAISYDGYIFKEAGSIINLQAINNALKSACRVNNIPIITSHALRHTHCSYLLAKG 301 Query: 302 ATAHELMATYGWKTVD-QAETYTKGADRI 329 + H + G K + Y+ + Sbjct: 302 VSIHYISKRLGHKNIAITTSVYSHLLEEK 330 >gi|253577466|ref|ZP_04854781.1| integrase/recombinase [Paenibacillus sp. oral taxon 786 str. D14] gi|251843166|gb|EES71199.1| integrase/recombinase [Paenibacillus sp. oral taxon 786 str. D14] Length = 339 Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 37/278 (13%), Positives = 89/278 (32%), Gaps = 23/278 (8%) Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRI-------SFESYFD--QIIRKSGDFDYRKITTKH 118 T + ++ + ++ + + ++ ++ + I D + K Sbjct: 35 RLTWEEAVNLFIQARRAETSSDDTIKFERNSLKCYQRILEEQDIEPDIYDISIDLLRNKF 94 Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + VE + + ++ + +++ F + + ++ NP ++ K I +T+E Sbjct: 95 VMFMVEKKGYKLNTINNRIKAIKRFFTFLHEEGWIPDNPAAHLKTRKGHQPTIPSFTEEQ 154 Query: 179 ----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--IKTQKTGTI 232 +Q G + + +L +GLR + + + K+ Sbjct: 155 VVALFKQPDQNTFTGFRDFVMLSLILDTGLRVGEMIKLKTSQVDIKDSQLLGVIGKSKKP 214 Query: 233 ITVELPDGFMKLLAMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGV---NK 284 + D KLL + FF+ +++ F AG+ Sbjct: 215 RDIPFCDDVRKLLIRYIKARGDVPSQYFFVTLHGRQLGVRTFQDTLHQYGKDAGITNVRV 274 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 S H +R A + + L G + D + Y Sbjct: 275 SPHTLRHTFAKMYILQDGDPYSLQDILGHTSQDMVKKY 312 >gi|30020683|ref|NP_832314.1| DNA integration/recombination/invertion protein [Bacillus cereus ATCC 14579] gi|31415821|ref|NP_852561.1| DNA integration/recombination/invertion protein [Bacillus phage phBC6A52] gi|229127965|ref|ZP_04256949.1| DNA integration/recombination/invertion protein [Bacillus cereus BDRD-Cer4] gi|29896235|gb|AAP09515.1| DNA integration/recombination/invertion protein [Bacillus cereus ATCC 14579] gi|228655527|gb|EEL11381.1| DNA integration/recombination/invertion protein [Bacillus cereus BDRD-Cer4] Length = 369 Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 48/366 (13%), Positives = 118/366 (32%), Gaps = 44/366 (12%) Query: 17 RHGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + G G+R + + T A + + + TL Sbjct: 7 KRGNKYCIVIDIGPDPETGKRRQKWFSGYKTRKEA-QADVAKKITELNEGTFIEPSKVTL 65 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 K ++ + + S+ ++ ++++ + +I G K+ HI+ ++ Sbjct: 66 KDYLNHWLE-IKSMSIEKSTFAGYKAFINQHVIPSIGMVTLHKLNVIHIQKCYKTAIDKG 124 Query: 131 SSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + L ++ AV+Q ++ NP E PK++ I+ WT+E++++F + Sbjct: 125 IANNSILLMHRILKSALNLAVKQNIISRNPADFAEIPKKEKTPIQTWTEEEVKKFLAHSQ 184 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--------------TGTII 233 E S+ + + + +G+R + Q + ++ + + Sbjct: 185 E-SRYHIGYLLAITTGMRLGEVLGLRWQDIDFEKHTVTINQTSGHDNKIKKTAKTNSSKR 243 Query: 234 TVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKAKATK 279 T+ +P+ + L + ++ N + + F F K Sbjct: 244 TIPVPNETIAALKKHKILINKEKLRFGSAYLDQDLINCNEFGRIIKRAHFRKSFIRMTHK 303 Query: 280 AGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSR 337 G+ H +R AT+ G + G + Y+ + + + Sbjct: 304 VGIKEIKFHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLSVYSHVLPN--MQEEAVK 361 Query: 338 RISSVV 343 + Sbjct: 362 NFGKSI 367 >gi|17547341|ref|NP_520743.1| integrase protein [Ralstonia solanacearum GMI1000] gi|254241660|ref|ZP_04934982.1| hypothetical protein PA2G_02364 [Pseudomonas aeruginosa 2192] gi|17429644|emb|CAD16329.1| integrase-tyrosine recombinase protein [Ralstonia solanacearum GMI1000] gi|126195038|gb|EAZ59101.1| hypothetical protein PA2G_02364 [Pseudomonas aeruginosa 2192] Length = 400 Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 56/365 (15%), Positives = 102/365 (27%), Gaps = 30/365 (8%) Query: 7 LPPFVTKERTRHGKI----IYYFRKGHGRRIRLPYPHESTFIPAY-----MSALTGSTPK 57 L P + T G+ Y G R+ L E T A A Sbjct: 27 LVPGFLCKVTPSGRKVFMLQYRTNAGERRKPALGQYGELTVEQARSLAQEWLAQVRRGGD 86 Query: 58 REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITT 116 + +K T+K L +++ + +++ ++S D+ I+ G + + Sbjct: 87 PAADKAQARKAPTVKELCTKFMEDYSKLRNKPSTQEGYQSVIDRNIVPMIGRMKVQDVKR 146 Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + ++ H P+ A + + MR +F A Y P Sbjct: 147 PDVAGMMKKMTHKPADANRTFSVMRRMFNLAEVWGYRPDGTNPCRHVPMFPNGKATHLIS 206 Query: 177 EDMQQFKSFWSEGSQPR--------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228 ++ E + LA R + + + Sbjct: 207 DEDMGKLFRHLEHLEAEGMESYVIPLAIRLQFEFAGRRGEIVTLQWDWVDFENRRVVWPD 266 Query: 229 TGTIITVELPDGFMKLL-----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV- 282 + T + L N Q + ++ + AG Sbjct: 267 SKTGGMSKPMSEEAYRLLSTAPRRDDCPYVLPSPNRPGQHLTTGEYYNGWSRALKAAGAA 326 Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342 + HG+R SAT A++G MA KTV Y D R+ + + Sbjct: 327 HVGTHGIRHRSATDIANSGIPVKVGMALTAHKTVAMFMRYVHTED------DPVRKAAEL 380 Query: 343 VDSDD 347 V + Sbjct: 381 VANRR 385 >gi|282917353|ref|ZP_06325108.1| phage integrase [Staphylococcus aureus subsp. aureus D139] gi|282318980|gb|EFB49335.1| phage integrase [Staphylococcus aureus subsp. aureus D139] Length = 345 Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 45/329 (13%), Positives = 99/329 (30%), Gaps = 24/329 (7%) Query: 19 GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP--RKKPTTLKWLIS 76 GK Y K G+R R A + K + S TL+ Sbjct: 8 GKKWQYEFKYEGKRYRKKGFRTK------REANSAGLDKLNELRSGFNIDNYITLEEYFE 61 Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVES--RKHTPSSA 133 + K+ + N+ + + I + G + KI + + + ++H + Sbjct: 62 NWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDYSKEHAKETI 121 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVER----PKRKTEGIRPWTKEDMQQFKSFWSEG 189 + ++R A+ + NP V P + + E + Sbjct: 122 RKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEILKDHVRKKR 181 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-------KTGTIITVELPDGFM 242 ++ LA ++ +G R S + ++H+ +I I M Sbjct: 182 TRSLLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTDTSPRYISIAKSDMKHIM 241 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAG 301 +++ I + + +N + K+ + ++H +R + G Sbjct: 242 DVISTFAISYDGYIFKEAGSIINLHAINNALKSACRVNNIPIITSHALRHTHCSYLLAKG 301 Query: 302 ATAHELMATYGWKTVD-QAETYTKGADRI 329 + H + G K + Y+ + Sbjct: 302 VSIHYISKRLGHKNIAITTSVYSHLLEEK 330 >gi|256420742|ref|YP_003121395.1| integrase family protein [Chitinophaga pinensis DSM 2588] gi|256035650|gb|ACU59194.1| integrase family protein [Chitinophaga pinensis DSM 2588] Length = 314 Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 45/294 (15%), Positives = 100/294 (34%), Gaps = 38/294 (12%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGVESRKH 128 + +++ + ++ +++ Q + GD + I+ H+R+ + Sbjct: 8 VANQFLAYIQLEKRYSAHTFTAYQQDLTQFFIFLRSQYGDVSLQGISHLHVRTWLAWLME 67 Query: 129 TP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 S + +++++ FK+A+R V +P V PK ++ M+ + Sbjct: 68 EGIVAKSVNRKISTLKSFFKYAMRHGVVVTSPMTKVTAPKTGKRLPGFIDEKGMEAVEDN 127 Query: 186 WS---------------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKT 229 S EG RL FE L ++G+R S+ +H+ + + K Sbjct: 128 RSMRRGQEGRPIFADDLEGKTHRLIFELLYHTGIRLSELIGLQERHVDISNLTLKVLGKG 187 Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDK----------QKMNATQFSIWFKAKATK 279 + + + + ++ DK +K+ K T Sbjct: 188 NKERIIPISKNLRDEIKGYRVMRDKALEMPDKEVLLVNPRSGKKLYPRYVYNVVKGYLTD 247 Query: 280 AGV----NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + +S H +R AT + GA + + G ++ + YT + Sbjct: 248 HEITTISRRSPHILRHTFATHLTNNGADLNAVKELLGHASLASTQVYTHNSIEK 301 >gi|228963001|ref|ZP_04124209.1| Phage integrase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228796655|gb|EEM44056.1| Phage integrase [Bacillus thuringiensis serovar pakistani str. T13001] Length = 385 Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 41/355 (11%), Positives = 92/355 (25%), Gaps = 45/355 (12%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 R R+ K Y R + + A K ++ + T Sbjct: 5 RKRNDKWEYRIRYKEMGKYKETSKGGFKTKKEAQLAAAKIEEKLVNGSNIQDGKITFNEY 64 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR--KHTPS 131 + E+ G++A + + +E I+ G+ + +T + + + K++ Sbjct: 65 LYEWLNVFKKGNVAPRTYMVYEKNIRLHILPVFGELKLKDLTRIKYQKFINNLLEKYSKK 124 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE--- 188 + +M AV + + + + + + + + Sbjct: 125 TVETINVTMHHALDTAVNELGILEKNPTTKIKLRTTRVSSKNDDIKCYDIDELHQFLTYI 184 Query: 189 -----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF------------------SIK 225 G + F FL +GLR + + + Sbjct: 185 LNEKGGFKYFSLFMFLSRTGLRIGECLALQWEDIDFEEQKLFINKTLITTKRNEKILFGP 244 Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW------------- 272 + + T+ L + L + + + N K Sbjct: 245 PKNRSSKRTISLDSSTISHLRKMKMEQNKNTLKNGKYYKEYNFVFTHEDNSCMLHPATLK 304 Query: 273 -FKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324 + K + + HG R A +GA + G ++D Y Sbjct: 305 FLQQACKKGNLKYITLHGFRHTHAVHLLQSGANLKYVSERLGHSSIDMTANVYLH 359 >gi|77462207|ref|YP_351711.1| integrase/recombinase [Rhodobacter sphaeroides 2.4.1] gi|77386625|gb|ABA77810.1| Integrase/recombinase [Rhodobacter sphaeroides 2.4.1] Length = 348 Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 76/333 (22%), Positives = 132/333 (39%), Gaps = 22/333 (6%) Query: 13 KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 + R +++ Y R R LP H FI A+ A +P ++ Sbjct: 2 QRIRRGDRVLCYHRPTGTRLPDLPETH-PDFIAAWAKAEASKPDL-----APPVADKSVA 55 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132 ++ R S W A + R++ + ++I + G R + KH+ + P Sbjct: 56 KVVRALRASKRWKGFAASYRLNLRFHLERIETEHGALPLRGLRQKHVEMDLGKLDPNPR- 114 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 L R++F A + +P + + K+ G WT ++ F++ W+ G++ Sbjct: 115 -NVSLKCWRLIFAQAKADGIIESDPSHEIGKIVTKSPGHVAWTTAEVAAFRARWAVGTRQ 173 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQN---NIFSIKTQKTGTIITVELPDGFMKLLAMTP 249 R AFE L ++G R SD+CR HL + F + + L Sbjct: 174 RAAFELLAWTGCRVSDACRMTRTHLGSDGLMTFRQQKTGGPAYVPWTCALPSWALRWEEE 233 Query: 250 IGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISA 298 + + + + S + A A +AG+ ++ HG+RKF T A Sbjct: 234 RETVRAAVMATAGFTLLETSYGKARSVKGLSNFITAAAAEAGIEGRTPHGLRKFRLTAIA 293 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +AG AH +MA G ++ +AE YT+ A R L Sbjct: 294 EAGGPAHAIMAWGGHASLSEAEAYTRAASRRGL 326 >gi|291542679|emb|CBL15789.1| Site-specific recombinase XerD [Ruminococcus bromii L2-63] Length = 327 Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 44/304 (14%), Positives = 95/304 (31%), Gaps = 42/304 (13%) Query: 73 WLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSG------------------DFDYRK 113 ++ +Y +++ + + R D D Sbjct: 11 AILKDYLIYKQTIKNMSKKTVDEYFIDLRTFFRFLKVMRGLVPDGTEFDEIKIDDVDLDL 70 Query: 114 ITTKHIRSGVE-------SRKHTPSSAIQFLTSMRVLFKWAVRQEYV-AINPCLSVERPK 165 I T ++ + R + +S + +S++ FK+ +++ NP +E PK Sbjct: 71 IKTVNLELAYDYMNFLYRDRNNKSASRARKCSSLKGFFKYITNNKHLLDTNPVEQLESPK 130 Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFS 223 K + T E + + ++ R L+ GLR S+ + ++ Sbjct: 131 NKKALPKYLTLEQSIELLNAVDGNNKQRDYCILTLFLNCGLRVSEMAGLNYNDIHSDGTM 190 Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKA 275 K V L + + FI+ + ++M+ Sbjct: 191 RVVGKGNKERIVYLNSACIDAYNEYMKVRPIDEVKDKKALFISRNHRRMSVKTIQAMVYK 250 Query: 276 KATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTK-GADRIR 330 K G++ S H +R +AT+ G L G + + E YT +++++ Sbjct: 251 YLEKIGLDSQGYSCHKLRHTAATLMYQQGGVDVRVLKEVLGHENLGTTEIYTHLSSEQMK 310 Query: 331 LGIK 334 Sbjct: 311 NAAD 314 >gi|196247965|ref|ZP_03146667.1| integrase family protein [Geobacillus sp. G11MC16] gi|196212749|gb|EDY07506.1| integrase family protein [Geobacillus sp. G11MC16] Length = 384 Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 53/378 (14%), Positives = 120/378 (31%), Gaps = 55/378 (14%) Query: 11 VTKERTRHGKIIYYFRK--------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62 + KE+ + +YFR G ++ T + + Y Sbjct: 7 LIKEKKKG----FYFRIDVGKDPVTGKRKQASFGPFRTKTEAKKELLKIKNQVDDGSYFK 62 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRS 121 + + + +++ ++ + + S E I++ +ITT I S Sbjct: 63 ESTED---FSMFMERWFNTSYKRTVEITTAKSREYVIRNHIMKYFQHKKINEITTFDIDS 119 Query: 122 GVESRKHTPSS---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + T S Q + F AV+ V +NP + + PK K+E WT ++ Sbjct: 120 FYVDKLDTGYSGAYIRQMHNLLNQAFDQAVKWSLVKVNPVKNAKPPKVKSEEKITWTVDE 179 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII----- 233 + +F + + S + + +++G+R + + I+ +++ + Sbjct: 180 VNRFLNLIKDSSME-IPYLLAIFTGMRRGEVLGLKWDDVDFENKKIRIKRSLCFVSGKGL 238 Query: 234 --------------------------TVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT 267 + + + L + +D + ++ Sbjct: 239 IFKEPKTKKSKRQISISQHVVNVLKKHKQKQEFQKEKLGVQYQDNNLIVCTDDGKPLDPR 298 Query: 268 QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKG 325 F +A V + S H +R ATI G + G V + Y+ Sbjct: 299 NLLRQFYRLIEEANVPRISFHDLRHTHATILMQQGENPKVVSERLGHSRVGITLDLYSHV 358 Query: 326 ADRIRLGIKNSRRISSVV 343 +D L + + + + + Sbjct: 359 SDD--LQEQAAEKFENAL 374 >gi|220929076|ref|YP_002505985.1| site-specific tyrosine recombinase XerC [Clostridium cellulolyticum H10] gi|219999404|gb|ACL76005.1| integrase family protein [Clostridium cellulolyticum H10] Length = 330 Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 45/311 (14%), Positives = 109/311 (35%), Gaps = 49/311 (15%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-------------------- 110 LK ++ Y ++ + N+ + +R Sbjct: 13 LKDFLN-YLQTI--KGKSKNTIQVYFYDLRIFLRFLKIHRNLVDKNIEFNSIDITDVDIS 69 Query: 111 -YRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERP 164 + +T + + + R +T + + + S++ F + + + + + INP + +E P Sbjct: 70 LLKTVTLSDLYTYMSFVSNKRDNTSHARARKVASLKSFFNYLSTKAKLLDINPTIELESP 129 Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219 K R ++ ++ + ++ + L G+R S+ + ++++ Sbjct: 130 KILKRLPRYLNFDESKKLLTSVNKADHEYAIRDYAIITIFLNCGIRLSELVGINLHNIKD 189 Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF--------FINNDKQKMNATQFSI 271 N K G ++ L ++ + + FI+ Q+++ Sbjct: 190 NTLI-VFGKGGKERSIPLNRACLQAIDDYLKVRPVNGLKDKSALFISRRNQRISKESVQK 248 Query: 272 WFKAKATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD 327 K T+AG++ S H +R +AT+ G L G +++ E YT D Sbjct: 249 IVKRYITEAGLDPQRYSTHKLRHTAATLMYKYGNVDIRALQEILGHESISTTEIYTH-LD 307 Query: 328 RIRLGIKNSRR 338 + +L + + Sbjct: 308 QQQL-KEAVDK 317 >gi|326335714|ref|ZP_08201900.1| site-specific tyrosine recombinase XerC [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692143|gb|EGD34096.1| site-specific tyrosine recombinase XerC [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 296 Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 38/276 (13%), Positives = 92/276 (33%), Gaps = 24/276 (8%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESR-- 126 Y + + ++ ++ + ++ + D K+ IRS + Sbjct: 3 DAFENYLRLE--KKYSPHTVTAYLTDVEEFAAFLKEEDPTVELSKVNYPLIRSWIIHLVE 60 Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 K T S + + S++ + + VR + P K + + P+++++++ S Sbjct: 61 SKITNRSINRKIASLKAYYAFLVRSLAIKSTPFQQHIPLKTQKKLSIPFSEKEIEDVLSI 120 Query: 186 WSE-----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD 239 +E + R+ E +G+R S+ + + + K + L Sbjct: 121 PTEEDSYTSLRNRMIIELFYATGIRRSELIELKINDIDLSQKTIKVLGKRNKERIIPLIH 180 Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG---------VNKSAHGVR 290 ++ L + ++ + + + ++ K KS H +R Sbjct: 181 TVVESLEKYLLIRKDVETSEEFLFLTNNGKKMYPKLVYNIINSYFSSVTTKQKKSPHVLR 240 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 AT D GA + + G + + YT + Sbjct: 241 HSFATHLLDNGADLNAVKELLGHAGLAATQVYTHSS 276 >gi|255008144|ref|ZP_05280270.1| tyrosine type site-specific recombinase [Bacteroides fragilis 3_1_12] Length = 359 Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 50/356 (14%), Positives = 105/356 (29%), Gaps = 29/356 (8%) Query: 11 VTKERTRHGKIIY-----YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65 + + R+GK Y Y G R A S E Sbjct: 11 LYLDIYRNGKRTYEYLKLYLIPGTDSNTRRQNEITMAAANAIKSKRIIELTSGEAGIVNH 70 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGV 123 L + Y + +I I+++ ++ + + Sbjct: 71 TDKIYLLDWMQTYLEYQEKRDKKGIGQI---KAVTHILKEYAGERFILDRVDLAFCQGYI 127 Query: 124 ESRKHT---------PSSAIQFLTSMRVLFKWAVRQEYVAINP---CLSVERPKRKTEGI 171 + T S+ + AVR + + NP E+PK Sbjct: 128 DYMLTTFRPKGKPIAASTRNTYYQIFNGALNAAVRAKRLLRNPFNEMEKSEKPKMPESVR 187 Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTG 230 T E+++ + + + + A+ F + GLR SD +++ + + Sbjct: 188 SYMTIEEVRALIATPMQEGRVKNAYLFSCFCGLRISDIVGLKWKNVFVDNGQYRLAVAMQ 247 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288 + L P ++ + + + + + A AG+ K + H Sbjct: 248 KTKEPIYLPLSNEALKWMPEREDKAADDPVFNL--PSNINQYLRPWAEAAGITKRFTFHT 305 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 R AT+ GA + + G +V + Y K ++ + + ++ + D Sbjct: 306 ARHTFATMMLTLGADLYTVSKLLGHTSVRMTQVYAKIINQKK--DEAVNLVNGLFD 359 >gi|239908080|ref|YP_002954821.1| site-specific recombinase [Desulfovibrio magneticus RS-1] gi|239797946|dbj|BAH76935.1| site-specific recombinase [Desulfovibrio magneticus RS-1] Length = 410 Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 49/308 (15%), Positives = 95/308 (30%), Gaps = 17/308 (5%) Query: 37 YPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI-SEYRKSAHWGSLAVNSRISF 95 ++ A +R+ + ++ T ++Y A + R + Sbjct: 74 GEGATSLAEKRKLAEAKREEERQQEEARARENITFADYCANDYLPLARVTKKPESIRKTE 133 Query: 96 ESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEY 152 E + + G + I H++ + + +P S + R ++ A + Sbjct: 134 EHVKNWLGPVVGRLPLKNIRQMHMQKVLLAMANAGRSPRSIQYVFATFRAIWNHARNNGF 193 Query: 153 VAIN-PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSC 210 V + P V PK E R ++ + + + S L +G+R S+ Sbjct: 194 VQVQSPTKGVALPKVNNERKRYLSRPEADALLAELATRSPQTHDLALLSLDTGMRFSEVT 253 Query: 211 RAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ 268 + I K + + +L G I + + Sbjct: 254 GLTWGCVDLDKGRIDILNAKGEKDRAIPMTARVKELFESMTPGASNELIFKSRVGGQIGK 313 Query: 269 FSIWFKAKATKAGVNK---------SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 S F K G+NK S H +R A+ +AG + + T G T Sbjct: 314 ISKSFDLAVEKLGLNKDVDDPKQIFSFHCLRHTCASWLIEAGTDLYVVQKTLGHSTPVVT 373 Query: 320 ETYTKGAD 327 + Y+ AD Sbjct: 374 QRYSHVAD 381 >gi|269218465|ref|ZP_06162319.1| tyrosine recombinase XerD [Actinomyces sp. oral taxon 848 str. F0332] gi|269211576|gb|EEZ77916.1| tyrosine recombinase XerD [Actinomyces sp. oral taxon 848 str. F0332] Length = 255 Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 39/255 (15%), Positives = 79/255 (30%), Gaps = 23/255 (9%) Query: 109 FDYRKITTKHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167 + + + S E +S + + ++R +A + NP V PK Sbjct: 1 MQISDVRPEDVASFAECLEGMARASVARSMAAVRSFHAFAFEEGRTGANPAADVRPPKIP 60 Query: 168 TEGIRPWTKED-----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222 + + +D + R E L +G R S++ V + Sbjct: 61 SRLPKAMDIDDVAALIAAGGAGEGPAPLRDRALLEVLYGTGARISEAVGLSVDDVDLAGA 120 Query: 223 SIK-TQKTGTIITVELPDGFMKLLAMTPIGKETF-----------FINNDKQKMNATQFS 270 S + K V L ++ + + F+N + ++ Sbjct: 121 SARLFGKGRKERVVPLGGYAVEAIDAYLVRARPSLASSGPGTPSLFLNTRGRPLSRQSAW 180 Query: 271 IWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT---KG 325 + A +A + + S H +R AT GA + G ++ + YT + Sbjct: 181 AIIQNAAERAKLSVHVSPHTLRHSFATHLLQGGADIRVVQELLGHSSLSTTQIYTMVSRD 240 Query: 326 ADRIRLGIKNSRRIS 340 R + + R +S Sbjct: 241 TVREVYALAHPRALS 255 >gi|254437019|ref|ZP_05050513.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 307] gi|198252465|gb|EDY76779.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 307] Length = 368 Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 46/320 (14%), Positives = 107/320 (33%), Gaps = 16/320 (5%) Query: 9 PFVTKERTRHGKIIYYFRKGHG--RRIRLPYPHESTFIPAYMSALT-GSTPKREYINSPR 65 + + K Y+ + G +RI + + A +AL R + + Sbjct: 38 KGLVLFVGKRSKTWYFQKDVGGQTKRILIGRFPIISAQAARQTALGFALEMGRGAGKAAQ 97 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 TL+ + Y + +++ + ++ +I+ + Sbjct: 98 IGAPTLEAAMEVYLARPKLR--SETNKVGMRAQLTLHLKDWMRLPLDEISKAMAVRRHQD 155 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 +PS+A L S R ++ A R + P +++E + K +G + ++ Sbjct: 156 MTGSPSAANHVLRSFRAIYNHARRTCDLPECPTMAIEWFEDKPDGRIIEDLKHWRKTID- 214 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 R+ +E LL++GLR ++ + +Q + + K G + + ++L Sbjct: 215 DLPNPIHRVFYELLLFTGLRKTEVFTLRWEQIQEDRIHLPMTKNGRSFDLPISQLHHEIL 274 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAH 305 A + + S + + H R+ AT++ +AG Sbjct: 275 APLRHLSRDWVF------PSPKSESGHITRPER---LKYNPHMHRRTFATVAMEAGVLEE 325 Query: 306 ELMATYGWKTVDQA-ETYTK 324 + + + YT+ Sbjct: 326 IVGRLLNHTPLSITGQRYTR 345 >gi|123441204|ref|YP_001005191.1| integrase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088165|emb|CAL10953.1| integrase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 332 Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 52/318 (16%), Positives = 102/318 (32%), Gaps = 19/318 (5%) Query: 14 ERTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 ++ G+ R G+RIR + + + + +E+++ P K L Sbjct: 4 KKLTDGRYEVDVRPQGSEGKRIR-RKFDKKAEAQTFERYVLANFHNKEWVDKPADKRV-L 61 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KH 128 LI + K + + +I R+ + IT K + R Sbjct: 62 SELIELWWK-YQGQNTKHGEKEKLR--LYKIDREMSNPRIYMITRKFLMEYRSQRLSSGL 118 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +P++ + L+ + +F + E + R + ED + Sbjct: 119 SPATVNRDLSVLSGMFSTLIEAEEFHSENPICAVSKLRLKNSEMSFLSEDEIVDLLSKAT 178 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248 G Q R+A L +G R ++ +H+ N + K G I ++ + D + ++ Sbjct: 179 GDQRRIALLC-LSTGARWGEAKNLRGEHIVGNKVTFVETKNGKIRSIPISDEMLTIIKTK 237 Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELM 308 G+ +F K +++H +R AT G L Sbjct: 238 KSGQLFNAD--------YNEFRSLLKELKPDLPKGQASHALRHTFATHFMMNGGNIITLQ 289 Query: 309 ATYGWKTVDQAETYTKGA 326 G + Q Y A Sbjct: 290 RILGHSNIQQTMNYAHFA 307 >gi|291516261|emb|CBK69877.1| Site-specific recombinase XerD [Bifidobacterium longum subsp. longum F8] Length = 319 Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 35/279 (12%), Positives = 83/279 (29%), Gaps = 15/279 (5%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESRKHT 129 L++ + + + + +ES + + +I + +R R Sbjct: 44 LLTLFLTAKEVEGCSPKTIAYYESTLQHMTQALA-KPCTRINSDDLREYLNRYENERHAG 102 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + M F W ++Y+ +P + R K + E+++ + Sbjct: 103 KVTIDNIRRIMSSFFAWLEDEDYIVKSPVRRIHRVKTAVMAKEVLSDENLETLRDRCGT- 161 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKLLAMT 248 + + L +G+R + + + T K V L Sbjct: 162 LRDLAIVDILASTGMRVGELVGLNIADVNLQERECLVTGKGNKQRPVYFDARTKLHLTAY 221 Query: 249 PIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301 + N D +++ + AG+++ H R+ AT + D G Sbjct: 222 LQSRNDSNPALFVALNGDGDRISIGGIESRLRQLGKDAGIHRVHPHKFRRTLATHAIDKG 281 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 ++ G +D Y ++ + + R + Sbjct: 282 MPIEQVQKLLGHARIDTTMHYA-MVNQNNVKASHRRYLE 319 >gi|229075069|ref|ZP_04208071.1| DNA integration/recombination/invertion protein [Bacillus cereus Rock4-18] gi|228708126|gb|EEL60297.1| DNA integration/recombination/invertion protein [Bacillus cereus Rock4-18] Length = 369 Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 49/366 (13%), Positives = 114/366 (31%), Gaps = 44/366 (12%) Query: 17 RHGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + G G+R + + T A + + + TL Sbjct: 7 KRGNKYCIVIDIGPDPETGKRRQKWFSGYKTKKEA-QADVAKKITELNEGTFIEPSKVTL 65 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 K ++ + + S+ ++ + + ++ + +I G K+ HI+ ++ Sbjct: 66 KEYLNHWLE-IKSMSIERSTFVGYRAFINQHVIPSIGMVALHKLNVMHIQKCYKTAMDKG 124 Query: 131 SSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + L ++ AV+Q ++ NP E PK++ I+ WT+E++++F Sbjct: 125 IANNSILLTHRILKSALNLAVKQNIISQNPAAFAEIPKKERTSIQTWTEEEVKKFLLHSQ 184 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--------------TGTII 233 E S+ + + + +G+R + Q + ++ + + Sbjct: 185 E-SRYHIGYLLAITTGMRMGEVLGLRWQDVDFEKHTVTINQTSGHDNKIKKTAKTNSSKR 243 Query: 234 TVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKAKATK 279 T+ +P ++ L + N + F F Sbjct: 244 TIPVPRETIESLKRHKITINKEKLRFGSAYQDFDLINCNEFGMIIKKANFRKNFIRATHN 303 Query: 280 AGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGIKNSR 337 AG+ H +R ATI G + G + Y+ + + + Sbjct: 304 AGIKEIKFHDLRHTHATILLKQGVNPKIISERLGHTDISLTLSVYSHVLPN--MQEEAVK 361 Query: 338 RISSVV 343 + Sbjct: 362 NFGKSI 367 >gi|170757613|ref|YP_001781774.1| phage integrase family site specific recombinase [Clostridium botulinum B1 str. Okra] gi|169122825|gb|ACA46661.1| site-specific recombinase, phage integrase family [Clostridium botulinum B1 str. Okra] Length = 354 Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 35/334 (10%), Positives = 88/334 (26%), Gaps = 22/334 (6%) Query: 12 TKERTRHGKIIYYFR--KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 +++ + + I ++ G ++ + + K + Sbjct: 7 WRKKDKGWQFIISYKDSIGKWKQKSKQGFKTQKDGKPVIDKMLKELKKNVKTVNKSYNKL 66 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129 T Y + ++ + S + + + KITT I+ V+ Sbjct: 67 TFSEFADIYVEHEKLYK-SIKTIESLITVLHKF-EDLNKKEMCKITTLDIQKIVDKVTKE 124 Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 ++ +L + LFK A + + + + + + ++ + Sbjct: 125 GLNNNTTRYYLKRLNTLFKSAKEEYNIIDSMPTKNIKVGKPVPTKKKALTDNEIKNLLED 184 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP-------- 238 + ++ L + +G+R + ++ +I K I + Sbjct: 185 FKNNKYYLLNFLAVNTGMRLGELLGITWDNVDFKNNTITVNKQWKKIEKGVWGFGDVKSK 244 Query: 239 -------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRK 291 + + + N + K K G + H +R Sbjct: 245 NSNRTIPVSNIVIKELMNHRNVININNRVLNFRSTNSVCAIVNGKFKKHGYTITFHELRH 304 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKG 325 AT G G +TY+ Sbjct: 305 TYATRLIANGVDFKTAAQILGHSVEQTLKTYSHV 338 >gi|119469654|ref|ZP_01612523.1| site-specific recombinase [Alteromonadales bacterium TW-7] gi|119446901|gb|EAW28172.1| site-specific recombinase [Alteromonadales bacterium TW-7] Length = 314 Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 43/282 (15%), Positives = 93/282 (32%), Gaps = 26/282 (9%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKH--- 128 L S+Y K + ++ + S D+ + +HIR + + Sbjct: 21 LFSDYLKFE--KQYSAHTVNQYVSQLGFAALYFNKLCDDWFGVQAEHIRRYSMALRAKQL 78 Query: 129 TPSSAIQFLTSMRVLFKW----AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + + L+ +R L+K+ + Q+ NP ++ PK + + M + Sbjct: 79 SGRTISLKLSCIRSLYKFLKAKNIAQQSHYHNPATGIKGPKFAKPLPKNLDVDQMARLLE 138 Query: 185 FWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDG 240 + + + E + SGLR S+ A +Q + I K + + Sbjct: 139 IPDDDPLAIRDKAMMELMYSSGLRISELVGANMQDINAKSGEILVRGKGNKERLIPVGTK 198 Query: 241 FMKLLAMTPIGKETFFINN--------DKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290 ++ L + F + K +++ Q + + K G+ H +R Sbjct: 199 ALEALKKWLTVRPQFAKPDEPGVFLSSQKNRISIRQVRLRMQEWGIKQGISSQVHPHKLR 258 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 A+ ++ + G ++ + YT D L Sbjct: 259 HSFASHILESSGDLRAVQELLGHSSLSATQVYTH-LDFQHLA 299 >gi|313887029|ref|ZP_07820729.1| site-specific recombinase, phage integrase family [Porphyromonas asaccharolytica PR426713P-I] gi|312923555|gb|EFR34364.1| site-specific recombinase, phage integrase family [Porphyromonas asaccharolytica PR426713P-I] Length = 304 Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 35/262 (13%), Positives = 86/262 (32%), Gaps = 9/262 (3%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-YRKITTKHIRSGVESRKHTPSS 132 ++ + K A N+ S++ Y ++ + +I I + + + Sbjct: 31 ILETFEKRLLMQRYAGNTIRSYKDYASIFLKHVSKYPSLEEIPLSDIEAFINEKVQNGKI 90 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 ++ + + K + + ++ + ++KE+++ + Sbjct: 91 SVSYQKGLVGAIKKMYELILDKKIQLDYLYPKRSFSKLPKFFSKEEVRNILDNTQ-NLKH 149 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--GTIITVELPDGFMKLLAMTPI 250 + + GLR S+ ++ ++++ I+ ++ V LPD + L Sbjct: 150 KAILMTIYSCGLRLSELLNLKIKDIKSSDGIIRIHQSKGNKDRIVSLPDKLLATLRHYYQ 209 Query: 251 GKETFFINNDKQK---MNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305 + + +K + + K KA V S H +R AT +G Sbjct: 210 AFKPKEYLFEGEKGGKYSERSVQLILKKALIKANVQSEGSVHTLRHSYATHLIQSGIDIR 269 Query: 306 ELMATYGWKTVDQAETYTKGAD 327 + G + + YT D Sbjct: 270 IVKELLGHENIKTTMIYTHITD 291 >gi|256113508|ref|ZP_05454342.1| phage-related integrase [Brucella melitensis bv. 3 str. Ether] gi|265994891|ref|ZP_06107448.1| conserved hypothetical protein [Brucella melitensis bv. 3 str. Ether] gi|262766004|gb|EEZ11793.1| conserved hypothetical protein [Brucella melitensis bv. 3 str. Ether] Length = 341 Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 57/333 (17%), Positives = 113/333 (33%), Gaps = 25/333 (7%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 + G+ YY G +R P + F+ + A + + + Sbjct: 11 KVNAKGRTYYYA-WRGGPALR-GEPGSAEFMASLQEA---------NDSRVIPDASKFRA 59 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVESRKH 128 +I+ Y+ S + LA +++ ++ + D+I +K GD + IR Sbjct: 60 VITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSIAQFDLPQKIRPVIRKWRGEFAD 119 Query: 129 TPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 P +A + + + +AV ++ NPC +++ + WT +D+ + K+ Sbjct: 120 KPRTADYGMQVLSRVLSYAVDPLGKISQNPCEGIKQLYKNDRAAIIWTDQDIARLKTKC- 178 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLL 245 + A + ++GLR D R H+ +N + + + L LL Sbjct: 179 -SPEVAWAVDLAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRHTKEAVIPLYAELRALL 237 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGA 302 P N K F F +A + + H R +AT AG Sbjct: 238 QTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLHFHDFRGTAATKFYIAGL 297 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 + + GW+ + + I+ Sbjct: 298 SECVIAEIMGWE-EETVRNIIRRYVSKTAAIEA 329 >gi|254452471|ref|ZP_05065908.1| phage integrase family protein, putative [Octadecabacter antarcticus 238] gi|198266877|gb|EDY91147.1| phage integrase family protein, putative [Octadecabacter antarcticus 238] Length = 368 Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 48/343 (13%), Positives = 112/343 (32%), Gaps = 18/343 (5%) Query: 9 PFVTKERTRHGKIIYYFRKGHG--RRIRLPYPHESTFIPAYMSALT-GSTPKREYINSPR 65 + + K Y+ + G +RI + + A +AL R + + Sbjct: 38 KGLVLFVGKRSKTWYFQKDVGGQTKRILIGRFPIISAQAARQTALGFALEMGRGAGKAAQ 97 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 TL+ + Y + ++I + ++ +I+ Sbjct: 98 IGAPTLEAAMEVYLARPKLR--SETNKIGMRAQLTLHLKDWMRLPLDEISKAMTVRRHHD 155 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 +PS+A L S R ++ A R + P +++E + K +G R + Sbjct: 156 MAGSPSAANHVLRSFRAIYNHARRTCDLPECPTMAIEWFEDKPDG-RIIENLKHWRKTID 214 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 R+ +E LL++GLR ++ + + + K G + + ++L Sbjct: 215 DLPNPIHRVFYELLLFTGLRKTEVFTLKWDQILEDRIHLPMTKNGRSFDLPISQLHHEIL 274 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAH 305 A + + + + + H R+ AT++ +AG Sbjct: 275 APLRPLSSDWVF------PSPKSETGHITRPVR---LKYNPHMHRRTFATVAMEAGVLEE 325 Query: 306 ELMATYGWKTVDQA-ETYTK-GADRIRLGIK-NSRRISSVVDS 345 + + + Y + D +R ++ + + +D+ Sbjct: 326 IVGRLLNHTQLSITGQRYVRPSLDALRPSMEIACAELLNRIDN 368 >gi|153954207|ref|YP_001394972.1| site-specific tyrosine recombinase XerC [Clostridium kluyveri DSM 555] gi|146347088|gb|EDK33624.1| Predicted recombinase [Clostridium kluyveri DSM 555] Length = 328 Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 43/293 (14%), Positives = 94/293 (32%), Gaps = 46/293 (15%) Query: 85 GSLAVNSRISFESYFDQIIRKSG--------------------------DFDYRKITTKH 118 + N+ ++ +R + Sbjct: 28 KGKSKNTLEGYKVDLTMFLRFLKLYKGLEKEGSQFEKIKIKDIDIDIIKQITLSDL-FAF 86 Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 I R + + + + S++ FK+ + + ++ NP L +E P+ + + Sbjct: 87 ISFIENYRHNKSYARARKVASLKSFFKYLCSKAKLISENPALELESPQISKRNPIYLSLK 146 Query: 178 DMQQFKSFWS--EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 + + + F L G+R S+ C + +++ + + K T+ Sbjct: 147 ESKLLLESIDGKFKERDYCIITFFLNCGMRLSELCSINISNIKEDTLT-VIGKGNKERTI 205 Query: 236 ELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN-- 283 L ++ L ++ + FI+ + ++N I K KA ++ Sbjct: 206 YLNKSCLEALKNYLTSRDEYLNKIKDKDALFISKNYARINKRSVEIMLKKYLKKANLDSE 265 Query: 284 -KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD-RIRLGI 333 + H +R +AT+ G L G + V + YT D R+R I Sbjct: 266 KYTPHKLRHTAATLMYKYGHVDIRSLQKILGHENVSTTQIYTHVDDERLREAI 318 >gi|294651114|ref|ZP_06728450.1| site-specific tyrosine recombinase [Acinetobacter haemolyticus ATCC 19194] gi|292823008|gb|EFF81875.1| site-specific tyrosine recombinase [Acinetobacter haemolyticus ATCC 19194] Length = 308 Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 43/281 (15%), Positives = 90/281 (32%), Gaps = 27/281 (9%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESR--- 126 + L+S + K + + ++ +++ R + + +R + SR Sbjct: 9 EKLLSMWLKERIIQNQSAHTISAYQRDLSDFFRFCEYKQLQLQDVEASDLREYLASRVEQ 68 Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + + SS + LTS+R KWA + +Y+ NP ++ ++ E + Q Sbjct: 69 DQLSSSSLQRNLTSIRQFMKWAAQGQYLQHNPSADLKLKRQPRPLPGMIDIETVNQILDQ 128 Query: 186 --------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236 + + E L SGLR ++ ++ + N ++ V Sbjct: 129 AAPEKPIDQQLWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLLRITGKGNKTRIVP 188 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQ----------KMNATQFSIWFKAKATKAGV--NK 284 + L + + + Q K +A +AGV + Sbjct: 189 FGTKAKQSLIEWLKIYRIWQGSFMADSAVFISQRGGALMPRQIENRVKLQAQRAGVNVDL 248 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 H +R A+ A + G + + YT Sbjct: 249 HPHLLRHCFASHMLSASRDLRSVQEMLGHSNLSTTQIYTHV 289 >gi|253577741|ref|ZP_04855025.1| tyrosine recombinase xerC [Paenibacillus sp. oral taxon 786 str. D14] gi|251842867|gb|EES70932.1| tyrosine recombinase xerC [Paenibacillus sp. oral taxon 786 str. D14] Length = 321 Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 39/287 (13%), Positives = 88/287 (30%), Gaps = 28/287 (9%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG--------- 122 + +I + + A N+R ++ + + +R +T + I + Sbjct: 26 EQIIQMFLTACA---KAPNTRRNYFRALEHFRQFLSGMRFRDVTWREIEAYKIYLTKGFY 82 Query: 123 -VESRKHTPSSAIQFLTSMRVLFKWAVR--QEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + P+S F+ ++ +KW + NP +V P R + + Sbjct: 83 RDGQKPLAPASVAAFIAPLKSFYKWGSDSSIGFFDHNPAQNVRIPAIAVTSRRHYLTRNE 142 Query: 180 QQFKSF--WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--GTIITV 235 + + L L+ GLR S+ C + ++ T Sbjct: 143 VGKLLEALRRQSLRNYLIGLSLVLLGLRVSELCGIKWKDFHADMLETSIWLTVSHAKRGK 202 Query: 236 ELPDGFMKLLAMTPIGK-------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286 + L + Q K +G+ K + Sbjct: 203 TREVKIPRELWNMYQEHARRLAKGHEPDPELKLFAITPRQIERIIKQAGIASGIQKQPTP 262 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 H +R +AT++ GA+ ++ + G ++ + Y ++I+ Sbjct: 263 HWLRHTNATLALLQGASLQQVQESLGHSHINTTQRYLHTVEQIKKAA 309 >gi|291457690|ref|ZP_06597080.1| tyrosine recombinase [Bifidobacterium breve DSM 20213] gi|291380743|gb|EFE88261.1| tyrosine recombinase [Bifidobacterium breve DSM 20213] Length = 339 Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 47/314 (14%), Positives = 92/314 (29%), Gaps = 67/314 (21%) Query: 78 YRKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGV--ESRKHTPSS 132 Y ++ L+ N+ ++ + + G +IT +RS + ES H SS Sbjct: 13 YLRAN--RGLSANTLKAYRCDIEACLHLFELRGVVSLNEITLNDLRSWMATESHNHARSS 70 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF------- 185 + ++R F W V +NP ++ P T+ +Q Sbjct: 71 MARKTVAVRGFFAWGYEHGVVGVNPAATLMTPSIPNTLPTVLTESQAEQLLDCAEHSEAL 130 Query: 186 -----------------------------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216 +E + E L +G+R ++ ++ Sbjct: 131 QRKNRDISNDSSADGPHSARGRSADRAREIAERQRDVAILELLYATGIRVAELVSLDIRD 190 Query: 217 LQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETF-------------------- 255 + + +++ V + L Sbjct: 191 VDFSNRTVRVTGKGNKQRVVPFGLPAEQALQDWIDYGRPALARLAIEKAVPPNGISSDEG 250 Query: 256 --FINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYG 312 F+ +++N A +AGV S H +R +AT D GA E+ G Sbjct: 251 ALFLGMRGKRLNQRVAREIVHKAAREAGVPDISPHALRHSAATHMLDGGADLREVQEMLG 310 Query: 313 WKTVDQAETYTKGA 326 ++ + YT + Sbjct: 311 HSSLKTTQRYTHVS 324 >gi|189219748|ref|YP_001940389.1| Site-specific recombinase XerD [Methylacidiphilum infernorum V4] gi|189186606|gb|ACD83791.1| Site-specific recombinase XerD [Methylacidiphilum infernorum V4] Length = 280 Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 37/261 (14%), Positives = 79/261 (30%), Gaps = 33/261 (12%) Query: 96 ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-------TPSSAIQFLTSMRVLFKWAV 148 +Y + +++ I + PSS ++R F + Sbjct: 2 RNYVQPLKEFFSFVKWQQCKEPKIEECRDYLYFLCKRPDLKPSSIRVRFAALRSFFNFFY 61 Query: 149 RQEYVAINPCLSVER-PKRKTEGIRPWT------------------KEDMQQFKSFWSEG 189 R++ + S PK R + KE ++ + + Sbjct: 62 REKKINKESPFSQVMLPKPDRNLPRYLSLEQVQALLNAPQKKWEKEKEKGKKSRWNEWQW 121 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF-----MKL 244 + + E L +GLR + ++ + ++ + + Sbjct: 122 KRDQAWLETLYGAGLRVGELSSLKRKNFFPSDLALLVEGKRKKERYCILGEVATASLCSY 181 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGA 302 L P E F+++ + + F + K AG+++S H +R AT + GA Sbjct: 182 LESCPFESEFLFVSSRGKPLTPRFFQLSLKEYLAIAGLDQSISPHKLRHTFATHLLEGGA 241 Query: 303 TAHELMATYGWKTVDQAETYT 323 + G + + YT Sbjct: 242 DLRSIQELLGHAHLSTTQIYT 262 >gi|149920205|ref|ZP_01908677.1| Phage integrase [Plesiocystis pacifica SIR-1] gi|149818971|gb|EDM78410.1| Phage integrase [Plesiocystis pacifica SIR-1] Length = 392 Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 41/347 (11%), Positives = 85/347 (24%), Gaps = 28/347 (8%) Query: 28 GHGRRIRLPYPHESTFI-------PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK 80 G R R P + + G + +K+ TL Y + Sbjct: 24 GQTHRERRKSPFSAKSASLRWGRERERHLLIHGLATASDDAGPIKKEVPTLAEFAPRYME 83 Query: 81 -SAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQF 136 A ++ + +I GD +I ++ ++ S Sbjct: 84 GYAKANGHKPSTLETKRQVLRLHLIPAFGDKRLDQINSELVQRLKAKLTEHMANKSINNV 143 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196 L + + K AV + P + + E K+ ++ + + Sbjct: 144 LGVLNTMLKCAVEWGVLEELPVRAKRMRVKSPSMDFYDFDEYAALVKAAAAQSPECLVFV 203 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-----------TGTIITVELPDGFMKLL 245 +GLR + + + + I T+ L L Sbjct: 204 LLAGDAGLRAGEIRGLHWAAVDLRRRQLTVEHSEYKGELTTPKYDKIRTIPLTRRLADAL 263 Query: 246 AMTPIGKE---TFFINNDKQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATISADAG 301 P E + + + A + + H +R + A G Sbjct: 264 GTLPRDCELVLYRGSEGREIPTSRQTGRTMLEKAQDAAKLRRRGPHTLRHTFCSHLAMRG 323 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 A A + G ++ + Y + + P Sbjct: 324 AAARVIQQLAGHASLVTTQRYMHLSPGATEA--AIALLEQPAPVLKP 368 >gi|329768225|ref|ZP_08259726.1| hypothetical protein HMPREF0428_01423 [Gemella haemolysans M341] gi|328837424|gb|EGF87053.1| hypothetical protein HMPREF0428_01423 [Gemella haemolysans M341] Length = 365 Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 38/357 (10%), Positives = 103/357 (28%), Gaps = 43/357 (12%) Query: 11 VTKERTRHGKIIYYFR---------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61 + + + K Y + G +RI Y L + Sbjct: 2 IKEYIDKDNKKYYEVKNHYIGKDVFTGKEKRISKKGFRTKREAENYCIKLKSEF---LEV 58 Query: 62 NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFDYRKITTKH 118 + T + + + + + + + + I+ + I Sbjct: 59 GFKSNQDYTFQDVYDLFDEQYK-RKVKDTTY--YRNTLHFNKHILPFFACMKVKDIKLVV 115 Query: 119 IRSGVESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + + ++ + ++ +AV+ E +A N E P+ K E + Sbjct: 116 CQKFINGLSESFKKATVKHYSILASMILDYAVKLEIIATNYMKYTEIPRMKEETKQDNYY 175 Query: 177 EDMQQFKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ----------------H 216 + + + + F L ++G+RC + C + + Sbjct: 176 TKSELLEFLEVVKNNYSLELYCTFRVLAFTGIRCGELCALTWKDFDLKNKTLSVNKNLTY 235 Query: 217 LQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK 276 ++ +T+ + + L + +++L + ++ + Sbjct: 236 VKGGYTVSETKTKSSNRIIYLDNETVEVLKQFRKQRSFVPLDTSVFNKKPELLKYYLNGI 295 Query: 277 A-TKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330 K + + + HG R AT+ ++G ++ G + + YT + + Sbjct: 296 CAKKPNLKRITLHGFRHTHATLLYESGIDVKDISNRLGHSNIKTTLDIYTHLTEDKK 352 >gi|295407330|ref|ZP_06817128.1| phage integrase [Staphylococcus aureus A8819] gi|297246409|ref|ZP_06930251.1| phage integrase [Staphylococcus aureus A8796] gi|294967775|gb|EFG43806.1| phage integrase [Staphylococcus aureus A8819] gi|297176680|gb|EFH35941.1| phage integrase [Staphylococcus aureus A8796] Length = 353 Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 47/337 (13%), Positives = 103/337 (30%), Gaps = 26/337 (7%) Query: 13 KERTR--HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP--RKKP 68 + +TR GK Y K G+R R A + K + S Sbjct: 8 RMKTRCYDGKKWQYEFKYEGKRYRKKGFRTK------REANSAGLDKLNELRSGFNIDNY 61 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVES-- 125 TL+ + K+ + N+ + + I + G + KI + + + Sbjct: 62 ITLEEYFENWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDYS 121 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER----PKRKTEGIRPWTKEDMQQ 181 ++H + + ++R A+ + NP V P + + E Sbjct: 122 KEHAKETIRKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEIL 181 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-------KTGTIIT 234 + ++ LA ++ +G R S + ++H+ +I I Sbjct: 182 KDHVRKKRTRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTDTSPRYISIA 241 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293 M +++ I + + +N + K+ + ++H +R Sbjct: 242 KSDMKHIMDVISTFAISYDGYIFKEAGSIINLQAINNALKSACRVNNIPIITSHALRHTH 301 Query: 294 ATISADAGATAHELMATYGWKTVD-QAETYTKGADRI 329 + G + H + G K + Y+ + Sbjct: 302 CSYLLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEK 338 >gi|227539350|ref|ZP_03969399.1| possible tyrosine recombinase [Sphingobacterium spiritivorum ATCC 33300] gi|227240806|gb|EEI90821.1| possible tyrosine recombinase [Sphingobacterium spiritivorum ATCC 33300] Length = 301 Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 34/262 (12%), Positives = 86/262 (32%), Gaps = 9/262 (3%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-YRKITTKHIRSGVESRKHTPSS 132 ++ + K A N+ S++ Y ++ + +I I + + + Sbjct: 28 ILETFEKRLLMQRYAGNTIRSYKDYASIFLKHVSKYPSLEEIPLSDIEAFINEKVQNGKI 87 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 ++ + + K + + ++ + ++KE+++ + Sbjct: 88 SVSYQKGLVGAIKKMYELILDKKIQLDYLYPKRSFSKLPKFFSKEEVRNILDNTQ-NLKH 146 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--GTIITVELPDGFMKLLAMTPI 250 + + GLR S+ ++ ++++ I+ ++ V LPD + L Sbjct: 147 KAILMTIYSCGLRLSELLNLKIKDIKSSDGIIRIHQSKGNKDRIVSLPDKLLATLRHYYQ 206 Query: 251 GKETFFINNDKQK---MNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305 + + ++ + + K KA V S H +R AT +G Sbjct: 207 AFKPKEYLFEGERGGKYSERSVQLILKKALIKANVQSEGSVHTLRHSYATHLIQSGIDIR 266 Query: 306 ELMATYGWKTVDQAETYTKGAD 327 + G + + YT D Sbjct: 267 IVKELLGHENIKTTMIYTHITD 288 >gi|145220218|ref|YP_001130927.1| phage integrase family protein [Prosthecochloris vibrioformis DSM 265] gi|145206382|gb|ABP37425.1| phage integrase family protein [Chlorobium phaeovibrioides DSM 265] Length = 325 Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 42/292 (14%), Positives = 90/292 (30%), Gaps = 39/292 (13%) Query: 74 LISEYRKSAHWG-SLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVESRKHT-- 129 + E+ + +L+ ++ +++ + Q D + +T IR + Sbjct: 19 FLEEFLFARRGRGNLSEHTVLAYRTDIRQFFSILSPPDDLQLLTAADIRFFMAELIRRGL 78 Query: 130 -PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 P S + L S+R F + + + + ++ P+ + + + ++ Sbjct: 79 QPRSIARKLASVRSFFHYLQERGLLGHSVLQTLSMPRYQRSVPAFLSVSETRELFETVVP 138 Query: 189 GSQPR----------------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGT 231 ++ R A E L GLR S+ L+ +K T K Sbjct: 139 AARYRKGEAGLLDSFVLHRDAAALELLYGCGLRISELTALQDNDLELAGGFVKLTGKGRK 198 Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-----------FSIWFKAKATKA 280 V L + L + FF ++ + + + K Sbjct: 199 QRIVPLGLAAVSALKKYFEVRRNFFRMKRGTELVGNGYVFLTNKGKKIYPMLVQRMTRKY 258 Query: 281 GVNKS------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 + + H +R AT ++GA + G + E YT + Sbjct: 259 LLPVTEQKKKNPHILRHSFATHLLNSGADLQSVSEMLGHSNLSTTEIYTHVS 310 >gi|126173817|ref|YP_001049966.1| phage integrase family protein [Shewanella baltica OS155] gi|125997022|gb|ABN61097.1| phage integrase family protein [Shewanella baltica OS155] Length = 451 Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 52/313 (16%), Positives = 109/313 (34%), Gaps = 15/313 (4%) Query: 27 KGHGRRIRLPYPHES-TFIPAYMSALTGSTPKREYINSPR-KKPTTLKWLISEYRKSAHW 84 + R R+ P + T A A RE P + + K + Sbjct: 49 IDNRTRTRILAPVSALTVKAAREKATEQLQAWREEHAQPSMSASPRFDVFVEQTWKPMIF 108 Query: 85 GSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTP-SSAIQFLTSMRV 142 +++ S +++ G + I K +++ + T +A + L +++ Sbjct: 109 DHWKPSTKRSVLPALNRRLLAHFGRYPLHMINHKMVQAWFDEISKTRKGAANRNLDTLQS 168 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-----FKSFWSEGSQPRLAFE 197 +FK A+RQ + NPC+ + + ++ R + +MQ+ + GS + A Sbjct: 169 VFKLALRQGHCLTNPCIGIRQ-NKRRVLNRFLSVAEMQRLSVALDECEEVGGSIAQCADI 227 Query: 198 FLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255 L +G R S+ ++++ N + KTG + + K Sbjct: 228 LRLLLLTGCRLSEITFLKGEYVRGNELHLPDSKTGAKVLYIGQAAVD--ILSRYHCKANT 285 Query: 256 FINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWK 314 + K + + + + G+ + H +R A+ + G + + + G K Sbjct: 286 ELFPMKLGASTSLVQSLWLRLRKQIGIEDVRLHDLRHTFASYAVMDGCSIPMVASLLGHK 345 Query: 315 TVDQAETYTKGAD 327 V YT D Sbjct: 346 KVTMTLRYTHVGD 358 >gi|215481987|ref|YP_002324169.1| Tyrosine recombinase xerC [Acinetobacter baumannii AB307-0294] gi|213988762|gb|ACJ59061.1| Tyrosine recombinase xerC [Acinetobacter baumannii AB307-0294] Length = 398 Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 47/342 (13%), Positives = 109/342 (31%), Gaps = 27/342 (7%) Query: 30 GRRIR--LPYPHESTFIPAYMSALTGSTPKREYIN-------SPRKKPTTLKW-LISEYR 79 G++I L + F ++ + I K TL+ ++ Y Sbjct: 53 GKKISKSLGTFSHADFDQNLEKLISQMQRFHQRIAQGLAPFEDEVKPANTLREFALTIYM 112 Query: 80 KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQF 136 SA + + I+ GD+ + I + + + +S + Sbjct: 113 PSAEMRKKSYKDDEAKLRM--HILPVIGDYPFEDINAGMLNKLLTELRSKGLTNASINRV 170 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-------SFWSEG 189 + V+F A+ + + +NP V + K + R +++++ + Sbjct: 171 RALLSVMFNMAINHDLIQVNPVSKVSKFKENNQIERYLNAQEIKRLMDVLNAPHQHGIDN 230 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAM 247 +FLL +G+R ++ + K+G + L + +L Sbjct: 231 LIIVAIVKFLLLTGVRKREAMDMKWTDVDLTTGVWLLGENKSGKARRITLNQDALAILHS 290 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHE 306 P F N + F++ A + N H +R A+I+ ++G + + Sbjct: 291 LPQQHAFIFANPMTGQPF-NDMRKTFQSIMKAASIRNIRIHDLRHNFASIAVNSGQSLYV 349 Query: 307 LMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISSVVDSDD 347 + G + + Y + ++ ++ S Sbjct: 350 VQHLLGHASPQTTQRYAHLQSSTLKQASEDVAAAIRAQSSHH 391 >gi|254461252|ref|ZP_05074668.1| phage integrase, putative [Rhodobacterales bacterium HTCC2083] gi|206677841|gb|EDZ42328.1| phage integrase, putative [Rhodobacteraceae bacterium HTCC2083] Length = 422 Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 57/385 (14%), Positives = 120/385 (31%), Gaps = 56/385 (14%) Query: 10 FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYM-SALTGSTPKREYINSPRKKP 68 +V R + G+ L Y + G+ P E + + Sbjct: 41 YVFSYRNAANRKR---NITIGKVGTLTPTEARKQAELYRFKIINGNDPLEEKYDPTKSF- 96 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRI-SFESYFDQIIRKSGDFDYRKITTKHIRSGVES-- 125 T+ LI EY KS + + A ++R I G+ I + + Sbjct: 97 -TVTNLIDEYLKSVAYLNKADSTRYTDICRIDRHIKPLVGNRLVSSIDMRFVEKLFRDIA 155 Query: 126 ----RKHTPS--------------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167 ++ PS +A + R + W + V N + Sbjct: 156 SGKTKRDKPSGKKFGRSTVRGGEGAARSTIRLFRAILSWGEKAALVDHNIVRAARNVDIG 215 Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQ-----------------PRLAFEFLLYSGLRCSDSC 210 +G R +D + ++ W + A + ++ +G R + Sbjct: 216 RDGKRETILDDPEAYEQLWHTLDRLSDPDQENENHAPIQQEATDAIKVIMLTGARKGEIT 275 Query: 211 RAGVQHLQ--------NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262 + + + ++TG + LP +++L+ + + K+ Sbjct: 276 NLLWEQVDLESGIISIDPHLHKTGRRTGDRRIIGLPQLAIEILSSYSVELRAGLVFKSKR 335 Query: 263 KMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAE 320 + S ++ +A + + HG+R A+ A GA+A E+M G + + + Sbjct: 336 SSDVIDLSKIWRRVREEANLPPTLGLHGLRHSLASHMAMDGASASEIMTALGHRDITSTQ 395 Query: 321 TYTK--GADRIRLGIKNSRRISSVV 343 Y A R L +++ + Sbjct: 396 RYIHWALASRQSLAENAVSKLTEGI 420 >gi|2251178|emb|CAB10656.1| XerC protein [Mycobacterium leprae] Length = 302 Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 38/293 (12%), Positives = 96/293 (32%), Gaps = 28/293 (9%) Query: 73 WLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHT 129 ++ E+ + + ++R ++ ++ +++ +RS + + Sbjct: 7 AILDEFDEHLALRCGRSEHTRRAYLGDLRSLLTHLEGRGSRLDQLSLPVLRSWLATAAGA 66 Query: 130 PSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 ++ + +++++ WA + +A +P ++ P+ ++ Q + Sbjct: 67 GAARTTLARRISAVKAFTAWAKWRGQLAADPAARLQVPRAYRTLPAVLRQDQALQIMAAA 126 Query: 187 SEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL 237 G + RL E L +G+R S+ C + + ++ K T Sbjct: 127 KSGAEQGDPLALRDRLIVEMLYATGIRVSELCGLDIDDVDTRHRLVRVLGKGNKQRTAPF 186 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQK-----------MNATQFSIWFKAKATKAG-VNKS 285 L + + ++ + A AG + Sbjct: 187 GVPAADALRGWLDDGRPALVTVESGPALLLGSRGRRLDVRQARTVVHQTVAVVAGAPDMG 246 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337 HG+R +AT + GA + G ++ + YT A R+R+ + Sbjct: 247 PHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSRLRVVHDQAH 299 >gi|113968738|ref|YP_732531.1| tyrosine recombinase XerC [Shewanella sp. MR-4] gi|117918850|ref|YP_868042.1| tyrosine recombinase XerC [Shewanella sp. ANA-3] gi|123130813|sp|Q0HN93|XERC_SHESM RecName: Full=Tyrosine recombinase xerC gi|171460757|sp|A0KS67|XERC_SHESA RecName: Full=Tyrosine recombinase xerC gi|113883422|gb|ABI37474.1| tyrosine recombinase XerC [Shewanella sp. MR-4] gi|117611182|gb|ABK46636.1| tyrosine recombinase XerC [Shewanella sp. ANA-3] Length = 299 Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 31/275 (11%), Positives = 90/275 (32%), Gaps = 20/275 (7%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIRSGVESRKH---TP 130 Y +S L+ ++ ++ + + D + +H + + +P Sbjct: 12 FETYMQSE--RQLSAHTVRNYMYELQRGSELLPEGVDLLNVGREHWQQVLAKLHRKGLSP 69 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 S +L++++ ++ +R + +NP + PK+ + + + + Sbjct: 70 RSLSLWLSAIKQWGEFLLRSGVIELNPAKGLSAPKQAKPLPKNIDVDSISHLLAIEGNDP 129 Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA 246 + + E SGLR ++ + +Q + ++ K V + ++ ++ Sbjct: 130 LTLRDKAIMELFYSSGLRLAELAALDLSSVQYDQHEVRVLGKGNKERIVPVGRYAIEAIS 189 Query: 247 MTPIGKETFFINNDK-------QKMNATQFSIWFKAKAT--KAGVNKSAHGVRKFSATIS 297 ++ ++ ++++ + H +R AT Sbjct: 190 AWLKCRKQISCEDNALFVTEKGKRLSHRSIQARMSKWGQEQALSMRVHPHKLRHSFATHM 249 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 ++ A + G + + + YT D L Sbjct: 250 LESSADLRAVQELLGHENLSTTQIYT-SLDFQHLA 283 >gi|189346148|ref|YP_001942677.1| integrase family protein [Chlorobium limicola DSM 245] gi|189340295|gb|ACD89698.1| integrase family protein [Chlorobium limicola DSM 245] Length = 337 Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 84/301 (27%), Gaps = 50/301 (16%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGVESRKHT 129 I + +++ ++ ++ + DQ G D R + + Sbjct: 21 IERFLDYLKSQKNVSSHTLTAYRNDLDQFSIFIASHLGIGDMRNFLPEQLAVVDVRLYMG 80 Query: 130 --------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 P S + L +++ +++ + + V PK T++ ++ Sbjct: 81 YLLKNGLQPKSIARKLATLKSFYRYLQHIGIIRTSVLAYVTTPKYPRTVPGFLTEQQTEK 140 Query: 182 FKSFWSEGS-------------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222 GS + R E L GLR S+ + +L Sbjct: 141 LFGEVLSGSSADASRSGAQDIQEQFELERDRALLEVLYSCGLRISELTGLEMHNLSLENG 200 Query: 223 SIKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFI-----------NNDKQKMNATQFS 270 +K V L ++ L + FF + K + Sbjct: 201 YVKITGKGNKQRIVPLGSCAVEALKKYFEVRRNFFRIFLKGDAGALAHVFVTKKGKKIYP 260 Query: 271 IWFKAKATKAGVNKS------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + + K + H +R AT ++GA + G ++ E YT Sbjct: 261 MLVQRITRKYLTPVTEQKERNPHILRHSFATHLLNSGADLKSVSEMLGHSSLTTTEIYTH 320 Query: 325 G 325 Sbjct: 321 V 321 >gi|138894424|ref|YP_001124877.1| DNA integration/recombination/invertion protein [Geobacillus thermodenitrificans NG80-2] gi|134265937|gb|ABO66132.1| DNA integration/recombination/invertion protein [Geobacillus thermodenitrificans NG80-2] Length = 387 Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 53/369 (14%), Positives = 109/369 (29%), Gaps = 57/369 (15%) Query: 17 RHGKIIYYFRK-----GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + GK Y +G+RI+ L + E + +L Sbjct: 7 KRGKNSYRLVYSMGFDANGKRIKRTKTVHVKTKKEAEKELAKFIAEIEAGEYIKPAKMSL 66 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH-- 128 I +R + L+ + ++ +Y + +II + G I H+ + + K Sbjct: 67 SDFIQLWRDNYAEKQLSPKTFETYNNYINTRIIPQLGHLQLADIKPIHLIRFLNNLKKDE 126 Query: 129 ----------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS-VERPKRKTEGIRPWTKE 177 + ++ + ++ +F AV +++ +NP + + +G E Sbjct: 127 TRLDGKKGSLSEATINYYRRILKNIFNRAVEWKFLQVNPAEKLPKEKEDIGKGDVYDENE 186 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-----------------NN 220 K E + RL F L GLR + + + Sbjct: 187 TRLLLKCLEKEDLKWRLYFTLALTCGLRKGELLALQWEDIDLESGTLYVKHSLSYTKEKG 246 Query: 221 IFSIKTQKTGTIITVELPDGFMKLLA----------------MTPIGKETFFINNDKQKM 264 F + + + + +P + LL F + + Sbjct: 247 FFLKEPKSKKSKREIAIPSFVLPLLKKYKNVRLREKEKLQDEWEGGNYNFVFATWNGKPH 306 Query: 265 NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE--- 320 + + ++ + + H +R SATI + G + G + Sbjct: 307 HHSYPRTKWERFLKRNNLRYIRPHDLRHTSATIMLNNGVNYKTVSERLGHSSTRITFDFY 366 Query: 321 -TYTKGADR 328 TK ADR Sbjct: 367 VHRTKEADR 375 >gi|154244121|ref|YP_001415079.1| integrase family protein [Xanthobacter autotrophicus Py2] gi|154158206|gb|ABS65422.1| integrase family protein [Xanthobacter autotrophicus Py2] Length = 342 Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 35/294 (11%), Positives = 83/294 (28%), Gaps = 31/294 (10%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFD----QIIRKSGDFD----YRKITTKHIRS 121 + I + L+ + ++ ++ G +TT +R+ Sbjct: 24 VGAAIEGWLAGLAHERRLSPKTLEAYARDLAVVLLRLTDHLGACPGLGDLAGLTTADVRA 83 Query: 122 GVESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT--- 175 + +R+ P + ++ L + R + R+ + +V PK +P + Sbjct: 84 VLAARRADGVAPRTLVRLLAAARSFGRHLEREGLGKVGALTAVRAPKVPRSLPKPVSIAA 143 Query: 176 ------KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQK 228 ++ L +GLR S++ + + + T K Sbjct: 144 ARALSDPTTRAGEDREDWVLARDAAVIALLYGAGLRISEALSLTPRDVPADAESITVTGK 203 Query: 229 TGTIITVELPDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKAG 281 V L + +A F ++ + + G Sbjct: 204 GRKTRMVPLIAPVRRSIAEYRAICPHALGPEGPLFRGTRGGPLSPRIVQLAVERMRGALG 263 Query: 282 VNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 + + + H +R AT G + G ++ + YT+ + Sbjct: 264 LPQSATPHALRHAFATHLLSRGGEIRAIQELLGHASLSTTQIYTEVDATALMAA 317 >gi|46205283|ref|ZP_00209783.1| COG0582: Integrase [Magnetospirillum magnetotacticum MS-1] Length = 300 Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 63/234 (26%), Positives = 108/234 (46%), Gaps = 6/234 (2%) Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 +R +SR+ TP++A L ++R LF WAV + +P V+R + ++G W+ + Sbjct: 1 MRQMRDSRRGTPAAANTLLKALRALFSWAVEHDLAPGDPTREVKRVRYASKGHHSWSLTE 60 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 ++ +++ G++ RLA LLY+ R D R G +H+ K V + Sbjct: 61 VEAYEAVHPLGTKARLALALLLYTAGRREDVVRLGPRHVSAGRMRYVQAKNEHRAPVAMD 120 Query: 239 DGFM-----KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKF 292 + ++ P +F + + + F FK +A + SAHG RK Sbjct: 121 IPIHPDLAEAIASVPPSSCPSFLETDYGRSFSPNGFGNRFKEWCIQAALPHCSAHGCRKA 180 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346 +A A+ GAT H++MA G +T+++ E YT+ A R RL + SD Sbjct: 181 TAARLAERGATPHQIMAITGHRTLEEVERYTREAQRARLADDAMALLPRRSGSD 234 >gi|291531297|emb|CBK96882.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3] Length = 476 Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 50/384 (13%), Positives = 116/384 (30%), Gaps = 50/384 (13%) Query: 14 ERTRHGKIIYYFRKGHG-----------RRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62 ++ ++G+ RK + + + + S L + Sbjct: 6 KKRKNGEGTLRLRKDGRWEGRIVVGYSEKSLPITKCVTAKTKTECSSKLEALKEPYGRSS 65 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRS 121 K I + ++ +L + +R +E ++ II + G +++ ++ Sbjct: 66 DRIKADMPFGDWIDFWYQTYCRHTLRITTRTDYENRIYNHIIPEIGKILLNRLSQSDLQQ 125 Query: 122 GVES--------------RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167 + + + + R + AV++ + NP + + +K Sbjct: 126 FYAKEKTDGRKLHAKTYGKGLSDRTIRGIHANCRTALQRAVQEGLIRTNPAVGCKLLPKK 185 Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227 ++ T+ ++ +F E L F L +G+R + L ++ + Sbjct: 186 AREMQVLTQNEIIRFLHQAKEEGCYEL-FLLELGTGMRRGEILALKWSDLNFATGELRIE 244 Query: 228 KTGTIITVELPDGF--------------------MKLLAMTPIGKETFFINNDKQKMNAT 267 + II E+ + ++ + N + Sbjct: 245 RQVYIIKAEVIISAPKTKASIRTVILPPSLLKTLVAYKETVDSEWMFPSPTDNGRPRNPS 304 Query: 268 QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325 + +AG K H +R AT++ + G L AT G + + Y+ Sbjct: 305 SVRKRLQLILERAGCKKVRFHDLRHTFATMALEHGMDVKTLSATIGHVSSATTLDIYSHI 364 Query: 326 AD-RIRLGIKNSRRISSVVDSDDP 348 D R + R D+ P Sbjct: 365 TDTMQRQAAVHIDRKIGGTDAQMP 388 >gi|257125886|ref|YP_003164000.1| integrase family protein [Leptotrichia buccalis C-1013-b] gi|257049825|gb|ACV39009.1| integrase family protein [Leptotrichia buccalis C-1013-b] Length = 356 Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 41/304 (13%), Positives = 85/304 (27%), Gaps = 57/304 (18%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVESR------- 126 Y + + N+ + Q + ++ ++ +I RS + Sbjct: 36 YYEEVIL-GKSFNTIRGYRRDLLQFMEYLDEYEKIHNFEEIEMMTFRSFIAYLNSPKRLM 94 Query: 127 -----------------------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINP 157 + S + ++++R FK+ + N Sbjct: 95 ENDKNKTENSENLKSIKNLKKCKKKAKPKPVSRRSINRKISALRTFFKYLQEINVIETNK 154 Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAG 213 + PK + E ++D+ + + + G + RL E L SGLR + Sbjct: 155 ASYISMPKFEKELPNVLNRDDLNKLRHVINTEKITGIRDRLIIELLYSSGLRSIELINLS 214 Query: 214 VQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFINNDK---------QK 263 + I+ + K L K+ + N + +K Sbjct: 215 EFMIDIEEREIRVIGKGEKERVTFFSENAKKWLIKYIDEKKKQYENYTREVLIVNSKGKK 274 Query: 264 MNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321 + +AG+ K + H R A + G L G ++ + Sbjct: 275 LTTRSLRRLISGHVHEAGIEKEITPHVFRHSFAMELLNNGVEIQYLQELMGHSSIAATQV 334 Query: 322 YTKG 325 YT Sbjct: 335 YTHV 338 >gi|168206201|ref|ZP_02632206.1| prophage LambdaBa04, site-specific recombinase, phage integrase family [Clostridium perfringens E str. JGS1987] gi|170662365|gb|EDT15048.1| prophage LambdaBa04, site-specific recombinase, phage integrase family [Clostridium perfringens E str. JGS1987] Length = 368 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 54/347 (15%), Positives = 108/347 (31%), Gaps = 36/347 (10%) Query: 18 HGKIIYYFRKGH----GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 G G+ +RIR+ T A S+ P+ K LK Sbjct: 9 KGNWQVVISLGNDPVTKKRIRVKKQGFKTKKEAEKFVNEYSSKVDNGFLLPKSKDIYLKD 68 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR-----K 127 I ++ + S+ +N+R ++ S + II G++ ++ T I++ Sbjct: 69 FILDWFYNHKVLSIGINTRNNYLSRIETYIIPLLGNYKLTELDTLTIQNFYNHLLTKDNP 128 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 PSSA + + ++ K+A + + + P + + I W+K+ + F + Sbjct: 129 LKPSSAKKVIEALSNCLKYAKKLKLITYLPTDIEK-VNIEKPKIEFWSKQQLDFFLN-EI 186 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247 + + +G+R + C + + + + L Sbjct: 187 KDTYLYFPVLICALTGVRVGELCGLKWCDVDFGRGYLNITRQVIADKSTNTLVCTENLKT 246 Query: 248 TPIGKETFFIN--------------------NDKQKMNATQFSIWFKAKATKAGVNK--- 284 T + + + N S+ F K K Sbjct: 247 TKSDRTISIPKVLLKEFEKNLKAPNDFIVLSRENEMCNPRNISMDFTKKVNKYKDKLPQI 306 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330 S HG+R AT+ G + G + TYT + ++ Sbjct: 307 SIHGLRHTHATLLILNGENIKIVSDRLGHNDITTTLNTYTHIMEEMK 353 >gi|33152918|ref|NP_874271.1| site-specific tyrosine recombinase XerC [Haemophilus ducreyi 35000HP] gi|71153410|sp|Q7VKG8|XERC_HAEDU RecName: Full=Tyrosine recombinase xerC gi|33149143|gb|AAP96660.1| integrase/recombinase XerC [Haemophilus ducreyi 35000HP] Length = 304 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 36/278 (12%), Positives = 81/278 (29%), Gaps = 21/278 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRK 127 Y ++ ++ +++ I + I + + Sbjct: 12 AQAYWDFLRIEKQVSPHTLTNYQRQLLAISEMLIAAQIDDWQAVDASVVRWILTQSHKQG 71 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 S L +R F + V++ YV +NP + ++ PK + E M Q Sbjct: 72 LGAKSIGLRLVVLRQWFAYLVQRHYVKVNPAVGIKAPKVARHLPKNIDAERMGQLLDVEV 131 Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--------TQKTGTIITVE 236 + E + SGLR ++ R + + ++ + Sbjct: 132 DEPADIRDLAMMELMYSSGLRLAELQRLDLGDMDLIDAEVRLLGKGNKERIVPIGSRALT 191 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 ++ + F+N +++ + + + G+ H +R A Sbjct: 192 ALQAWLTVRPSFNPQDNALFLNKRGGRLSHRSIQLAMQKWGERQGLATRLHPHKLRHSFA 251 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 T +A + G ++ + YT D L Sbjct: 252 THLLEASTDLRAVQELLGHSSLSTTQIYTH-LDFQHLA 288 >gi|86131808|ref|ZP_01050405.1| phage integrase family protein [Dokdonia donghaensis MED134] gi|85817630|gb|EAQ38804.1| phage integrase family protein [Dokdonia donghaensis MED134] Length = 296 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 34/264 (12%), Positives = 92/264 (34%), Gaps = 24/264 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESR---KHTPSSAIQFL 137 + + ++ +++E G+ D K+ IR+ + S + S + + Sbjct: 14 KNYSKHTVLAYEKDVTSFFVFLENNYGERDPVKVAYAQIRAWIISLVDAGLSSQSVNRKV 73 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-----FWSEGSQP 192 +S++ +K+ ++ + ++P + + K P++++++ + Sbjct: 74 SSLKSYYKFLLKTGDILVSPLVKHKSLKVSKRVQIPFSEKEVAIVLEELRESQDFTSLRD 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMTPIG 251 L E L +G+R ++ + + + K + L G + L + Sbjct: 134 LLIVELLYGTGMRRAELIDLTMGSVDFSQKILKVKGKRDKERFIPLLPGVITTLERYVVE 193 Query: 252 KETFFINNDKQK---------MNATQFSIWFKAKATKA--GVNKSAHGVRKFSATISADA 300 + + + + + +T ++A S H +R AT + Sbjct: 194 RAQVAQSGNSEPLLVTLKGLKVYSTLVYRIINRYFSEASDKFKTSPHILRHSFATHLLNQ 253 Query: 301 GATAHELMATYGWKTVDQAETYTK 324 GA + + G ++ + YT Sbjct: 254 GADLNVVKELLGHASLASTQVYTH 277 >gi|241206577|ref|YP_002977673.1| site-specific tyrosine recombinase XerD [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860467|gb|ACS58134.1| tyrosine recombinase XerD [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 317 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 43/290 (14%), Positives = 84/290 (28%), Gaps = 35/290 (12%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRKH 128 + + + A N+ S+E D + + S + Sbjct: 9 VESFLEMMSAERGAAANTLQSYERDLDDVRSFLTERSIRLTEAASADLAAYLSSLAREGF 68 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 PSS + L +MR +K+ + +P ++ PK+ + E++ + S Sbjct: 69 KPSSQARRLAAMRQFYKFLYAEGLRTDDPTGILDAPKKGRPLPKTMGVEEVGRLLSQAEA 128 Query: 189 GSQP-----------RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVE 236 ++ E L +G+R S+ + L + K V Sbjct: 129 EAEDTAPGQLQRLRMLALLELLYATGMRVSELVSLPARVLDQEGRFLMIRGKGNKERLVP 188 Query: 237 LPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 L + L F + + + F+ K A +AG+ Sbjct: 189 LSHSAISALKSYGRLLAAENAAVKERQESPWLFPSASKEGYLPRQVFARDLKNLAIRAGL 248 Query: 283 N---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 S H +R A+ GA + G + + YT + Sbjct: 249 TPSLISPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEER 298 >gi|126667008|ref|ZP_01737983.1| hypothetical protein MELB17_05659 [Marinobacter sp. ELB17] gi|126628414|gb|EAZ99036.1| hypothetical protein MELB17_05659 [Marinobacter sp. ELB17] Length = 303 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 30/274 (10%), Positives = 71/274 (25%), Gaps = 26/274 (9%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KH 128 + L Y + + + Q+ +++T ++ Sbjct: 9 FQALHQRYLTELTLRGKSPKTIDLYTRCLRQVCDYFETCP-DQLSTDQLQQYFMHLVEHR 67 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + S +++ +++ + + + + + + + + + Sbjct: 68 SWSLVKIARNALQSFYQYVLGKPWEYVPIVKAPKVQTLQDVL-----SLKEVERLISRTR 122 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLA 246 ++ F GLR S+S + + ++ K V LP +K L Sbjct: 123 KLSYQVYFLTTYSLGLRLSESLNLTIADVDSHLMRVHVRCGKGKKDRFVPLPLMTLKALR 182 Query: 247 MTPIGKETFFINNDKQK--------------MNATQFSIWFKAKATKAGVNKS--AHGVR 290 + M K A G+ K H +R Sbjct: 183 RYWATHRHPDLLFPGWHPPYASVATSGKPRVMARGGVQKAIKQVALDCGIRKHVHIHSLR 242 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324 AT + G + G + YT+ Sbjct: 243 HSFATHLLENGVNLRSIQTLLGHASPVTTARYTR 276 >gi|218442340|ref|YP_002380665.1| hypothetical protein PCC7424_5613 [Cyanothece sp. PCC 7424] gi|218175444|gb|ACK74172.1| hypothetical protein PCC7424_5613 [Cyanothece sp. PCC 7424] Length = 273 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 49/264 (18%), Positives = 91/264 (34%), Gaps = 13/264 (4%) Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 R T +I + + + IS++ + Q + G R +T + V Sbjct: 6 RATSDT--EIIILWLN-----GKSKTTVISYQCHVKQFLEFVG-KPLRDVTLDDLSLWVN 57 Query: 125 SRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 T P + + +++ LF +A R Y+ +N ++ PK K + Sbjct: 58 RLNLTYQPVTVANKILTVKSLFSFACRVGYLTVNVGSFIKSPKLKDTLAERILDPSEVKR 117 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242 + + + + GLR S+ C L+N + K V +P Sbjct: 118 LINAAPNERDSVLLSLMYGCGLRVSEVCGLNWSDLKNGKAT-VFGKGAKTRIVIIPPNLW 176 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300 L P E F++ ++ T K +GV S+H +R A+ + +A Sbjct: 177 DRLMKLPRDGEAVFMSRRGNRLERTYIHKMIKECCHLSGVSEKASSHWLRHSHASHAVEA 236 Query: 301 GATAHELMATYGWKTVDQAETYTK 324 G L + G ++ E Y Sbjct: 237 GCNLRLLQQSLGHSKLETTEKYLH 260 >gi|42523751|ref|NP_969131.1| integrase/recombinase XerD [Bdellovibrio bacteriovorus HD100] gi|39575958|emb|CAE80124.1| integrase/recombinase XerD [Bdellovibrio bacteriovorus HD100] Length = 292 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 42/267 (15%), Positives = 85/267 (31%), Gaps = 22/267 (8%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 I + + + + N+ +++ + + T ++ K + S Sbjct: 6 WIDFFDELQNVRGRSQNTVMAYRRDLELYLEYRKTGK----TVPGFYEFMKKNKLSTRSQ 61 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--- 190 + ++S+R FK+ + + PK K + T ++ QQ Sbjct: 62 ARVISSLRTYFKFC-ETRGMKCPELRELRPPKVKVGLPKVLTPQEFQQLFDAAEVPDAVK 120 Query: 191 --QPRLAFEFLLYSGLRCSDSCRAGV-QHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247 + +L FL G R S+ V Q + + K V L + + L + Sbjct: 121 TARNQLTLLFLYGLGCRVSELIGLNVVDFNQTDRWIKVLGKGNKERLVPLTEKLAENLTV 180 Query: 248 TPIGKET---------FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296 IN+ + + W A + +AG + H R AT Sbjct: 181 YLKEHRMALVKENSPSILINDRGHRPSRVDVWRWLAAWSARAGFAEPVNPHRFRHGCATA 240 Query: 297 SADAGATAHELMATYGWKTVDQAETYT 323 ++GA + G ++ + YT Sbjct: 241 LLESGADLRSIQMLLGHASIQTTQIYT 267 >gi|327440195|dbj|BAK16560.1| integrase [Solibacillus silvestris StLB046] Length = 313 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 40/290 (13%), Positives = 82/290 (28%), Gaps = 40/290 (13%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHI-------------- 119 Y + + +R +E +R D ++ T I Sbjct: 13 YLTTI--TGKSQRTRKEYEYDLILFMRFLKAIEEDIPLDRLHTIDISTITIDQIKEVSLE 70 Query: 120 ------RSGVESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIR 172 R ++ S+ + + +++ FK+ ++ + NP +E PK Sbjct: 71 DLYLFMEYCEVQRGNSSSARARKVATLKSFFKYLKGKRRLIDENPAEHLETPKIGRRQPV 130 Query: 173 PWTKEDMQQFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229 + + F S + F L G+R S+ C + + + ++ + Sbjct: 131 YLNYNEAKDFIGAVQTQSYSARDECMMVFFLNLGIRVSELCSLNIDSINGRMLTVIGKGN 190 Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV------- 282 L + ++ ++ A V Sbjct: 191 KERHVYLNDACMNALDKYLQERHAYKGDGKEPLFISQKGTRFARQSIARIVKVINANSHS 250 Query: 283 ---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + H +R SAT+ +GA L G +V + YT D Sbjct: 251 PKEKLTPHKLRHTSATMMYKSGADIRTLQHILGHSSVATTQIYTHIEDEQ 300 >gi|282881982|ref|ZP_06290623.1| tyrosine recombinase XerC [Peptoniphilus lacrimalis 315-B] gi|281298012|gb|EFA90467.1| tyrosine recombinase XerC [Peptoniphilus lacrimalis 315-B] Length = 326 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 42/300 (14%), Positives = 96/300 (32%), Gaps = 47/300 (15%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK--------------SGDFDYRKITT 116 L + Y S+ + N+ + +R D K+ Sbjct: 7 LDDFLD-YLSSS--KGHSENTIKEYYYDLRIFLRYMIIRKTNFYDNVKSLDGVDIDKVDE 63 Query: 117 ------------KHIRSGVESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVER 163 +I + RK + S + ++++R F + + + + INP SV+ Sbjct: 64 DLLKAINKQDIYAYISYLDKERKLSNKSKYRKISAVRAFFDYLTNKIDLLKINPSESVDL 123 Query: 164 PKRKTEGIRPWTKEDMQQFKS-------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216 PK + + ++ L G+R S+ + + Sbjct: 124 PKIEKSLPIYLNLDQAINLLKTIENSKENDFYRTRDYCICTLFLNCGMRLSELSQINISS 183 Query: 217 LQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF-----FINNDKQKMNATQFSI 271 +++ + K + L + + + + + FI+ K++M+ Sbjct: 184 IKDEMIR-VLGKGNKERQIYLNNACIYSIKNYLMHRPKVSTDALFISMRKKRMSNRSIQH 242 Query: 272 WFKAKATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD 327 + +G++ + H +R +AT+ G A L G +++ + YT D Sbjct: 243 MIEKHIRNSGLDPNKYTVHKLRHTAATLMYQYGNADIKSLQEILGHESITTTQIYTHVND 302 >gi|315633490|ref|ZP_07888780.1| tyrosine recombinase XerC [Aggregatibacter segnis ATCC 33393] gi|315477532|gb|EFU68274.1| tyrosine recombinase XerC [Aggregatibacter segnis ATCC 33393] Length = 296 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 36/271 (13%), Positives = 93/271 (34%), Gaps = 21/271 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESRKH-- 128 + +Y ++ ++ +++ + I++ +G ++++T +R + Sbjct: 5 LQKYLTYLRIERQVSPHTLTNYQHQLVRVIAILQDAGIQQWQQVTLSVVRYVLAQSSKQD 64 Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 S L+++R + V Q + +NP + V PK+ + ++ +Q + Sbjct: 65 GLKEKSLALRLSALRRFLSYLVYQGQLKVNPAVGVSAPKQPKHLPKNIDRDQIQLLLAND 124 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 + R E SGLR S+ + + + ++ V L Sbjct: 125 SKEPIDIRDRAMIELFYSSGLRLSELQGLNLNSINLRVREVRVIGKGNKERIVPLGRYAS 184 Query: 243 KLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293 + + F++ +M+ + + + G+ + + H +R Sbjct: 185 HAIQQWLKVRLLFNPKDDALFVSQLGNRMSTRTIQMRLERWGIRQGLNSHLNPHKLRHSF 244 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324 AT +A + + G + + YT Sbjct: 245 ATHMLEASSDLRAVQELLGHSHLSTTQIYTH 275 >gi|257428815|ref|ZP_05605210.1| integrase [Staphylococcus aureus subsp. aureus 65-1322] gi|257434137|ref|ZP_05610488.1| integrase [Staphylococcus aureus subsp. aureus E1410] gi|282914862|ref|ZP_06322643.1| integrase [Staphylococcus aureus subsp. aureus M899] gi|282925359|ref|ZP_06333015.1| phage integrase [Staphylococcus aureus subsp. aureus C101] gi|293507876|ref|ZP_06667718.1| phage integrase [Staphylococcus aureus subsp. aureus 58-424] gi|293510848|ref|ZP_06669548.1| integrase [Staphylococcus aureus subsp. aureus M809] gi|293545448|ref|ZP_06672124.1| integrase [Staphylococcus aureus subsp. aureus M1015] gi|296277052|ref|ZP_06859559.1| phage integrase [Staphylococcus aureus subsp. aureus MR1] gi|257274459|gb|EEV05971.1| integrase [Staphylococcus aureus subsp. aureus 65-1322] gi|257281063|gb|EEV11207.1| integrase [Staphylococcus aureus subsp. aureus E1410] gi|282312993|gb|EFB43393.1| phage integrase [Staphylococcus aureus subsp. aureus C101] gi|282321256|gb|EFB51586.1| integrase [Staphylococcus aureus subsp. aureus M899] gi|290919759|gb|EFD96831.1| integrase [Staphylococcus aureus subsp. aureus M1015] gi|291094939|gb|EFE25207.1| phage integrase [Staphylococcus aureus subsp. aureus 58-424] gi|291466320|gb|EFF08846.1| integrase [Staphylococcus aureus subsp. aureus M809] Length = 345 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 45/329 (13%), Positives = 99/329 (30%), Gaps = 24/329 (7%) Query: 19 GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP--RKKPTTLKWLIS 76 GK Y K G+R R A + K + S TL+ Sbjct: 8 GKKWQYEFKHEGKRYRKKGFRTK------REANSAGLDKLNELRSGFNIDNYITLEEYFE 61 Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVES--RKHTPSSA 133 + K+ + N+ + + I + G + KI + + + ++H + Sbjct: 62 NWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDYSKEHAKETI 121 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVER----PKRKTEGIRPWTKEDMQQFKSFWSEG 189 + ++R A+ + NP V P + + E + Sbjct: 122 RKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEILKDHVRKKR 181 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-------KTGTIITVELPDGFM 242 ++ LA ++ +G R S + ++H+ +I I M Sbjct: 182 TRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTNTSPRYISIAKSDMKHIM 241 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301 +++ I + + +N + K+ + ++H +R + G Sbjct: 242 DVISTFAISYDGYIFKEAGSIINLHAINNALKSACRVNNIPIITSHALRHTHCSYLLAKG 301 Query: 302 ATAHELMATYGWKTVD-QAETYTKGADRI 329 + H + G K + Y+ + Sbjct: 302 VSIHYISKRLGHKNIAITTSVYSHLLEEK 330 >gi|332112212|gb|EGJ12188.1| tyrosine recombinase XerC subunit [Rubrivivax benzoatilyticus JA2] Length = 313 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 41/293 (13%), Positives = 81/293 (27%), Gaps = 31/293 (10%) Query: 70 TLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESR 126 TL + + LA + + ++ + + R H+R + Sbjct: 4 TLPDDVQRWLDHLGVERRLAPRTLALYRDALGRLAASAAADGVELRAAQPHHVRRWMAQL 63 Query: 127 KHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + P S L++ R L++W R+ V NP ++ PK + + Sbjct: 64 RTAGLAPRSIALVLSAWRGLYRWWGREGLVPANPVDGLKAPKTGKPLPKALPVDQAVALA 123 Query: 184 SFWSEGSQPRLAFEFL------LYSGLRCSDSCRAGVQ-------HLQNNIFSIKTQKTG 230 +E RLA GLR + + + S G Sbjct: 124 EHENEDGDARLAARDHAIVELLYGCGLRIGELLALDLAPSAGAAGWIDAEDASAHVLGKG 183 Query: 231 TIITVELPDGFMKLLAMTPIGKETF---------FINNDKQKMNATQFSIWFKAKATKAG 281 + F++ ++++ K A +AG Sbjct: 184 RKRRSVPVGAKALEALAAWLAVRGQLAAAGEPALFVSRRGERLSQGALRARLKQIALQAG 243 Query: 282 VN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 + H +R A+ + + G ++ + YT D L Sbjct: 244 LPTHVHPHMLRHSYASHLLQSSGDLRAVQELLGHASISTTQVYT-QLDFQHLA 295 >gi|312112853|ref|YP_004010449.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100] gi|311217982|gb|ADP69350.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100] Length = 344 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 47/294 (15%), Positives = 87/294 (29%), Gaps = 34/294 (11%) Query: 71 LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFD--------YRKITTKHIRS 121 ++ ++ + A N+ ++E Q + D +T RS Sbjct: 41 VRDAVAGWLAYLRDAHRYADNTLEAYERDSRQFLAHLAGKDARPVTLARLNALTPHDFRS 100 Query: 122 GVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + R+ S + L+++R LF+ R + L+V PK +P T+ Sbjct: 101 FLADRRDDGAQSRSLSRTLSALRSLFRTLERTGALQNRSILAVALPKLPPRLPKPVTEAK 160 Query: 179 MQQFKS----------FWSEGSQPRLAFEFLLYSGLRCSDSCR--AGVQHLQNNIFSIKT 226 ++ G++ + L SGLR S++ L Sbjct: 161 AKEVVDEAALDGELSAHPWTGARNQAVLLLLYGSGLRISEALGLNRKDAPLGPRDVLRIR 220 Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATK 279 K G + +A ++N + T Sbjct: 221 GKGGRERLAPVLPVAQTAIADYIEQCPHKLEPQGPLFVGVKGGRLNPRIVQLLLARLRTN 280 Query: 280 AGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 + + H +R AT GA + G ++ + YT DR RL Sbjct: 281 LALPATATPHALRHSFATHLLSRGADLRVIQELLGHASLSTTQGYT-AVDRDRL 333 >gi|94309002|ref|YP_582212.1| site-specific tyrosine recombinase XerC [Cupriavidus metallidurans CH34] gi|93352854|gb|ABF06943.1| tyrosine-based site-specific tyrosine recombinase XerC [Cupriavidus metallidurans CH34] Length = 369 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 56/331 (16%), Positives = 106/331 (32%), Gaps = 44/331 (13%) Query: 41 STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD 100 T PA A P P +++L ++ ++ LA ++ S+ Sbjct: 2 RTRQPARNRAHAVDEADEASAEKPAPDPLVVRYL--DWLATS--RKLAAHTLTSYGHDLS 57 Query: 101 QI----IRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEY- 152 + IR + + T+HIRS + + + L++ R + WA R + Sbjct: 58 VLQSQAIRLAPGVALLALETRHIRSFAARLHGNGLSARTIARTLSAWRGFYLWAARHGHG 117 Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSD 208 V NP V PKR + + E + + + + + FE SGLR S+ Sbjct: 118 VQSNPVDGVRAPKRGRPLPKALSVEHAVALVAHRQDDTNESLRDQAVFELFYSSGLRLSE 177 Query: 209 SCRAGVQHLQNNIFSIKTQKT------------GTIITVELPDGFMKLLAMTPIGKETFF 256 + V++ ++ + TV + ++ L +E Sbjct: 178 LIQLDVRYTEDGDYRSSGWLDLDGAEVTVLGKGSRRRTVPVGSKAIQALKAWIHVREMML 237 Query: 257 IN-------------NDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAG 301 +++ + K +A AGV H +R AT + Sbjct: 238 RPGALPEDAHALFLGTRGRRLPISTVQQRIKRQALAAGVPSDVHPHMLRHSFATHMLQSS 297 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLG 332 + G ++ + YT D L Sbjct: 298 GDLRAVQEMLGHASISTTQIYT-SLDFQHLA 327 >gi|170747111|ref|YP_001753371.1| integrase family protein [Methylobacterium radiotolerans JCM 2831] gi|170653633|gb|ACB22688.1| integrase family protein [Methylobacterium radiotolerans JCM 2831] Length = 291 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 45/271 (16%), Positives = 86/271 (31%), Gaps = 27/271 (9%) Query: 90 NSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGV---ESRKHTPSSAIQFLTSMRVLF 144 N+ ++ D + + +R+ + E+R SSA + L+ +R Sbjct: 11 NTLSAYRRDLDDYLGYLARSGTALGDVDAGTLRAFLIDLETRGLKASSAARRLSCVRGFH 70 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--------WSEGSQPRLAF 196 K+ + +P ++V P+R + + ++ + + G R Sbjct: 71 KFLYAEGGAESDPSVAVSGPRRGRALPKVLSIAEVDRLLATAQAAAGADQPPGPARRARR 130 Query: 197 EFLLY-----SGLRCSDSCR-AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT-- 248 L +GLR S+ + I K G V L + +A Sbjct: 131 MVCLLELLYATGLRVSELVALPRTAGASRERYLIVRGKGGRERLVPLTEAARAAMAAHLP 190 Query: 249 ---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGA 302 F ++D + F+ K A AG++ S H +R A+ GA Sbjct: 191 AVPEDSPWLFPADSDSGYLTRQAFARDLKVLAAAAGLHPDRVSPHVLRHAFASHLLQNGA 250 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGI 333 + G + + YT D + Sbjct: 251 DLRIVQELLGHADISTTQIYTHVLDERLKAM 281 >gi|254450597|ref|ZP_05064034.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 238] gi|198265003|gb|EDY89273.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 238] Length = 358 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 45/320 (14%), Positives = 104/320 (32%), Gaps = 16/320 (5%) Query: 9 PFVTKERTRHGKIIYYFRKGHG--RRIRLPYPHESTFIPAYMSALT-GSTPKREYINSPR 65 + + K Y+ + G +RI + + A +AL R + + Sbjct: 28 KGLVLFVGKRSKTWYFQKDVGGQTKRILIGRFPIISAQAARQTALGFALEMGRGAGKAAQ 87 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 TL+ + Y + +++ + ++ +I+ Sbjct: 88 IGAPTLEAAMEVYLARPKLR--SETNKVGMRAQLTLHLKDWMRLPLDEISKAMTVRRHHD 145 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 +PS+A L S R ++ A R + P +++E + K +G R + Sbjct: 146 MAGSPSAANHVLRSFRAIYNHARRTGDLPECPTMAIEWFEDKPDG-RIIENLKHWRKTID 204 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 R+ +E LL++GLR ++ + + + + K G + + ++L Sbjct: 205 DLPNPIHRVFYELLLFTGLRKTEVFTLKWEQILEDRIHLPMTKNGRSFDLPISQLHHEIL 264 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAH 305 A + + + + + H R+ AT++ +AG Sbjct: 265 APLRPLSSDWVF------PSPKSETGHITRPVR---LKYNPHMHRRTFATVAMEAGVLEE 315 Query: 306 ELMATYGWKTVDQA-ETYTK 324 + + + YT+ Sbjct: 316 IVGRLLNHTPLSITGQRYTR 335 >gi|17987295|ref|NP_539929.1| integrase/recombinase [Brucella melitensis bv. 1 str. 16M] gi|17982974|gb|AAL52193.1| integrase/recombinase [Brucella melitensis bv. 1 str. 16M] Length = 336 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 57/333 (17%), Positives = 112/333 (33%), Gaps = 25/333 (7%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 + G+ YY G +R P + F+ + A + + + Sbjct: 6 KVNAKGRTYYYA-WRGGPALR-GEPGSAEFMASLQEA---------NDSRVIPDASKFRA 54 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVESRKH 128 +I+ Y+ S + LA +++ ++ + D+I +K GD + IR Sbjct: 55 VITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSITQFDLPQKIRPVIRKWRGEFAD 114 Query: 129 TPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 P +A + + + +AV ++ NPC +++ + WT +D+ + K+ Sbjct: 115 KPRTADYGMQVLSRVLSYAVDPLGKISQNPCEGIKQLYKNDRAAIIWTDQDIARLKTKC- 173 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLL 245 + A + ++GLR D R H+ +N + + + L LL Sbjct: 174 -SPEVAWAVDLAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRHTKEAVIPLYAELRALL 232 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGA 302 P N K F F +A + H R +AT AG Sbjct: 233 QTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLYFHDFRGTAATKFYIAGL 292 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 + + GW+ + + I+ Sbjct: 293 SERVIAEIMGWE-EETVRNIIRRYVSKTAAIEA 324 >gi|315222639|ref|ZP_07864528.1| site-specific recombinase, phage integrase family [Streptococcus anginosus F0211] gi|315188325|gb|EFU22051.1| site-specific recombinase, phage integrase family [Streptococcus anginosus F0211] Length = 322 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 39/263 (14%), Positives = 81/263 (30%), Gaps = 14/263 (5%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS----GVESRKH 128 LI + + + + +ES + K D D KITT +R E Sbjct: 46 DLIQLFLAAKRVEGCSNKTVHYYESTIRNAVEKI-DKDVVKITTDDLRMFLDGYQEENNI 104 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + + + F W ++Y+ + + + K +T E ++ + + Sbjct: 105 SKVTVDNIRRILSSFFAWLEDEDYIVKSSVRRIHKVKTCKTVKETYTDEALEIMRD-ECD 163 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM 247 G + + L +G+R + + + K V L Sbjct: 164 GLRDLAMIDLLASTGMRVGELVKLNCDDIDFENRECVVLGKGNKQRRVYFDARTKLHLQK 223 Query: 248 TPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300 +E ++ + I + K ++K H R+ AT + D Sbjct: 224 YLNSREDSNEALFVSLQKPYNRLLISGVEIRLRNLGEKLNLHKVHPHKFRRTLATTAIDK 283 Query: 301 GATAHELMATYGWKTVDQAETYT 323 G ++ G +++D Y Sbjct: 284 GMPIEQVQQLLGHQSIDTTLQYA 306 >gi|314947728|ref|ZP_07851135.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0082] gi|313645708|gb|EFS10288.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0082] Length = 393 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 43/363 (11%), Positives = 112/363 (30%), Gaps = 45/363 (12%) Query: 11 VTKERTRHGKIIYYFR--KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI---NSPR 65 ++K + ++G++ + ++ R + A R I + Sbjct: 17 ISKYKKKNGQVAWMYKGHIATDPRTGEKINTTRRGFSSKQEAQKDYDEYRHQILYGVKKK 76 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRI-SFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 T + L +E+ S+ ++ S +QI+ G I+ + + V+ Sbjct: 77 APDMTFEDLYNEWITHQR-TSVKASTIAISVRYANNQILPAFGKLKLSNISVPYCQKVVD 135 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG--IRPWTKEDMQQF 182 S + ++ V +Y+ NP P++K + ++KE++ Sbjct: 136 EWHSKYESYDYMRKQTAQILRYGVAMQYIDNNPMEKTLLPRKKEYEKNRKFYSKEELNNL 195 Query: 183 KSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--------------- 225 + + + F L Y+G+R S+ + + + Sbjct: 196 LDAFKDFGNMKQYAFFRLLAYTGMRKSEVLALQWKDIDTFNKELHVNKTLAVDEFGKVII 255 Query: 226 --TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN---------------ATQ 268 + + + L + +L + ++ ++ + Sbjct: 256 QSPKTRASRRVISLDTETLSILNNWKLQQKEEYLKLGYNTSSKEQHVFTTVKNTLYIPNT 315 Query: 269 FSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGA 326 + W + K + + + HG R A++ +AG + + G + + Y Sbjct: 316 VNDWLRYILKKYNLPRITPHGFRHTHASLLLEAGESVKVVQQRLGHENSKVTLDIYAHIT 375 Query: 327 DRI 329 + Sbjct: 376 NNA 378 >gi|241664436|ref|YP_002982796.1| integrase family protein [Ralstonia pickettii 12D] gi|240866463|gb|ACS64124.1| integrase family protein [Ralstonia pickettii 12D] Length = 351 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 48/346 (13%), Positives = 107/346 (30%), Gaps = 25/346 (7%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 +T G RK + + Y++ + T+ Sbjct: 6 KTPSGTWKAVIRKIGWP-TTAKTFRTKRDAEDWARRTEDEMVRGVYLSRGPSEKLTVAGA 64 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134 + Y + ++ S + G + ++ + + R S Sbjct: 65 LRRYMEEVSVTK-KPTTQRSERFTAQHLEAFFGKYSMAAVSADLVAKYRDVRLAAGKSNN 123 Query: 135 QF---LTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 L + LF+ A+++ + NP ++ +P T R + ++ + + S Sbjct: 124 TVRIELAMLGHLFRTAIQEWSIGLTFNPVANIRKPSPGTGRDRRLSLDEQARLFAAVSAH 183 Query: 190 SQPRLAFEFLLY--SGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLL 245 S P L + L +G+R S+ + + +++ K G+ V L +L Sbjct: 184 SNPMLGWIVGLAVETGMRSSEIATLRRSQVDLNRRVVNLRDTKNGSARVVPLTRAAADVL 243 Query: 246 AMTPIGKE--------TFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATI 296 + F K F + + G+ + H +R + + Sbjct: 244 RLALSNPIRPLDSDLVFFGEPGRDGKRRPYVFQKLWTSIVRDIGLADLHFHDLRHEAVSR 303 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342 +AG + E+ A G K++ + YT ++ +V Sbjct: 304 LVEAGLSDQEVAAISGHKSMQMLKRYTHL-----RAEDLVEKLDAV 344 >gi|323137166|ref|ZP_08072245.1| integrase family protein [Methylocystis sp. ATCC 49242] gi|322397524|gb|EFY00047.1| integrase family protein [Methylocystis sp. ATCC 49242] Length = 336 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 38/316 (12%), Positives = 89/316 (28%), Gaps = 38/316 (12%) Query: 53 GSTPKREYINSPRKKPTTLKWL------ISEYRKSAH-WGSLAVNSRISFESY----FDQ 101 P+ P P + + ++ + ++ ++ Sbjct: 10 RKAPRPATEARPLPGPAFFSAAPQIAEEAALWLQALSGERRASRHTIDAYARDVGVFLRF 69 Query: 102 IIRKSGDFD----YRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVA 154 + G + +R+ + R++ S ++ L ++R ++ ++ Sbjct: 70 LTEHLGAKPDAAALSAMQPADLRAFLARRRNDGLESRSLLRALAAVRNFLRFLEKKGLAR 129 Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR---------LAFEFLLYSGLR 205 + +V PKR + T D + + R L GLR Sbjct: 130 TDVFGAVRAPKRPHSLPKALTVGDARDLIDPEQRAGEAREPWVLARDAAVMALLYGVGLR 189 Query: 206 CSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF------FI 257 S++ + T K G T+ + + + + F+ Sbjct: 190 ISEALSIQRADAPIGRTDRVTITGKGGKTRTLPVIEPVRRAIEAYLAICPYDLAGGPLFV 249 Query: 258 NNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKT 315 ++ + + G+ + H +R AT G + G + Sbjct: 250 GARGGPLSPRIVQLAIQRLRGALGLPDSATPHALRHSFATHLLGRGGDLRTIQELLGHAS 309 Query: 316 VDQAETYTKGADRIRL 331 + + YT D+ RL Sbjct: 310 LSTTQIYT-AVDKKRL 324 >gi|314938400|ref|ZP_07845691.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133a04] gi|314942325|ref|ZP_07849173.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133C] gi|314951459|ref|ZP_07854509.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133A] gi|314993130|ref|ZP_07858516.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133B] gi|314996013|ref|ZP_07861091.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133a01] gi|313589767|gb|EFR68612.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133a01] gi|313592370|gb|EFR71215.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133B] gi|313596416|gb|EFR75261.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133A] gi|313598942|gb|EFR77787.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133C] gi|313642298|gb|EFS06878.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133a04] gi|315579058|gb|EFU91249.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecalis TX0630] Length = 393 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 43/363 (11%), Positives = 112/363 (30%), Gaps = 45/363 (12%) Query: 11 VTKERTRHGKIIYYFR--KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI---NSPR 65 ++K + ++G++ + ++ R + A R I + Sbjct: 17 ISKYKKKNGQVAWMYKGHIATDPRTGEKINTTRRGFSSKQEAQKDYDEYRHQILYGVKKK 76 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRI-SFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 T + L +E+ S+ ++ S +QI+ G I+ + + V+ Sbjct: 77 APDMTFEDLYNEWITHQR-TSVKASTIAISVRYANNQILPAFGKLKLSNISVPYCQKVVD 135 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG--IRPWTKEDMQQF 182 S + ++ V +Y+ NP P++K + ++KE++ Sbjct: 136 EWHSKYESYDYMRKQTAQILRYGVAMQYIDNNPMEKTLLPRKKEYEKNRKFYSKEELNNL 195 Query: 183 KSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--------------- 225 + + + F L Y+G+R S+ + + + Sbjct: 196 LDAFKDFGNMKQYAFFRLLAYTGMRKSEVLALQWKDIDTFNKELHVNKTLAVDEFGKVII 255 Query: 226 --TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN---------------ATQ 268 + + + L + +L + ++ ++ + Sbjct: 256 QSPKTRASRRVISLDTETLSILNNWKLQQKEEYLKLGYNTSSKEQHVFTTVKNTLYIPNT 315 Query: 269 FSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGA 326 + W + K + + + HG R A++ +AG + + G + + Y Sbjct: 316 VNDWLRYILKKYNLPRITPHGFRHTHASLLLEAGESVKVVQQRLGHENSKVTLDIYAHIT 375 Query: 327 DRI 329 + Sbjct: 376 NNA 378 >gi|313206990|ref|YP_004046167.1| integrase family protein [Riemerella anatipestifer DSM 15868] gi|312446306|gb|ADQ82661.1| integrase family protein [Riemerella anatipestifer DSM 15868] Length = 291 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 39/270 (14%), Positives = 92/270 (34%), Gaps = 21/270 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRKH- 128 + ++ ++N+ S+ G + K IR+ V Sbjct: 2 VEKFLDYITIEKRYSLNTLASYSRDLQDFSDFVKETEGVDTLISVDKKVIRNFVVYLSEN 61 Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ--QFKS 184 + + + L+++R + + V+ ++ +P +V K E P+++++M+ Q Sbjct: 62 NLSKRTINRKLSALRSFYIYLVKLGIISASPMETVSSLKFYGEKQIPFSQKEMENLQNLL 121 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243 + +L E L +G+R S+ CR ++ + I+ + + + + + Sbjct: 122 NEEKLLLNKLIIELLYQTGMRKSELCRLALKDVDFIQNRIRVVGKGNKMREIPISENIKR 181 Query: 244 LLAMTPIGKETFFINNDKQKMNATQ--------FSIWFKAKATK--AGVNKSAHGVRKFS 293 L + + N + + KS H +R Sbjct: 182 ELKLYLEKERKPTKENLDYFFVRESGQKLTGKFVYSVVNDYLSAVTSKKKKSPHVLRHSF 241 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYT 323 AT + GA ++ G ++ + YT Sbjct: 242 ATHVLENGAEIAQVKEILGHASLASTQVYT 271 >gi|294790009|ref|ZP_06755213.1| putative phage integrase [Simonsiella muelleri ATCC 29453] gi|294482052|gb|EFG29775.1| putative phage integrase [Simonsiella muelleri ATCC 29453] Length = 347 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 58/348 (16%), Positives = 109/348 (31%), Gaps = 26/348 (7%) Query: 1 MTPSLRLPPFVT--KERTRHGKIIYYFRKG---HGRRIRLPYPHESTFIPAYMSALTGST 55 M LP + K + ++GKI+ Y+ +G+R+ + Y A+ Sbjct: 1 MKAPNNLPSGMRARKRQRKNGKIVIYYFGEVSQNGKRVEISLGT------EYFVAVKKWA 54 Query: 56 PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYR 112 SP + T +Y VN+ ++ + D Sbjct: 55 EINIEKISP-SQSITFSQAADKYFSEVIEPKGKVNTINGVKNSIKSLKTFFSTPKDAPLH 113 Query: 113 KITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 +IT +H+ + R PSSA + +F+ A + Y+ V+ K+ R Sbjct: 114 EITPQHLNRFLAWRSSAPSSANVEIAFFSAIFEHAQKSGYIDFEKKNPVKGVKKNKIEKR 173 Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 D + Q R + L +G R D C + + I +IK KT Sbjct: 174 DNYINDKLFDVVYEHADQQMRDLMDIALLTGQRPIDICSLHTSQISDGILNIKQVKTSAR 233 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA----------GV 282 + E+ +++ F+N + +N + WF + Sbjct: 234 LRFEISGSLKEIIDRIAPENGFLFLNKHGKPLNRQLITNWFLNLRKQIMQERPELEEELR 293 Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 N +R +AT + G + + Y + + Sbjct: 294 NFQFRDLRAKAATDAYLQN-DKETARELLGHTSTNMTNRYIRQVKVQK 340 >gi|229073696|ref|ZP_04206809.1| DNA integration/recombination/invertion protein [Bacillus cereus F65185] gi|228709405|gb|EEL61466.1| DNA integration/recombination/invertion protein [Bacillus cereus F65185] Length = 369 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 50/367 (13%), Positives = 119/367 (32%), Gaps = 43/367 (11%) Query: 15 RTRHGKIIYYFRKG----HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 R R K G G+R + + T A + + + T Sbjct: 6 RKRGNKYCIVVDIGPDPETGKRRQKWFSGYKTKKEA-QADVAKKITELNEGTFIEPSKVT 64 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT 129 LK ++ + + S+ ++ + + ++ + +I G K+ HI+ ++ Sbjct: 65 LKEYLNHWLE-IKSMSIERSTFVGYRAFINQHVIPSIGMVTLHKLNVMHIQKCYKTAIDK 123 Query: 130 PSSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + L ++ AV+Q ++ NP E PK++ I+ WT++++++F Sbjct: 124 GIANNSILLMHRILKSALNLAVKQNIISRNPAAFAEIPKKERTSIQTWTEDEVKKFLLHS 183 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--------------TGTI 232 E S+ + + + +G+R + Q + ++ + + Sbjct: 184 QE-SRYHIGYLLAITTGMRMGEVLGLRWQDIDFEKHTVTINQTSGHDNKIKKTAKTNSSK 242 Query: 233 ITVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKAKAT 278 T+ +P ++ L + ++ N + + F F Sbjct: 243 RTIPVPKETIESLKRHKILINKEKLRFGSAYLDQDLINCNEFGKIIKRAHFRKSFIRMTH 302 Query: 279 KAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNS 336 K G+ H +R AT+ G + G + Y+ + + Sbjct: 303 KVGIKEIKFHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLSVYSHVLPN--MQEEAV 360 Query: 337 RRISSVV 343 + + Sbjct: 361 KNFGKSI 367 >gi|219856083|ref|YP_002473205.1| hypothetical protein CKR_2740 [Clostridium kluyveri NBRC 12016] gi|219569807|dbj|BAH07791.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 293 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 40/285 (14%), Positives = 97/285 (34%), Gaps = 20/285 (7%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVES 125 LK +++Y+K + + + ++ ++ + + IT ++ ++S Sbjct: 10 LKAAVNQYKKYLINTEKSKETITGYSNHLKRMESYLIEKFNYPPYLQDITLTNLEEYLDS 69 Query: 126 RKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + +S + +R + + R+E V N L++E K K + TK ++ Sbjct: 70 QLARGLAQASRSKSYYIIRSFYNYCCRKELVEKNIALNLEPIKVKRKERTYLTKNEVIV- 128 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDG 240 E + + ++G+R S+ ++ + I K + + D Sbjct: 129 LVQKMENELIKTIVMAIYHTGMRISECTNLKIKSVDFKNKVIHIIGGKGNKDRDIPISDT 188 Query: 241 FMKLLAMTPIGKETFFINNDKQ------KMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292 K+L + +N +++ + + G K SAH +R Sbjct: 189 LNKILTKYIKNERLEVNSNYFFATKASGRISPQHINRQINETVKRLGWEKHVSAHILRHS 248 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNS 336 A+ ++ G + YT + + +R + Sbjct: 249 FASKLIQQEVNLVKIQKLLGHSDLRVTSIYTHTSKEELRQAVNVI 293 >gi|229916013|ref|YP_002884659.1| integrase family protein [Exiguobacterium sp. AT1b] gi|229467442|gb|ACQ69214.1| integrase family protein [Exiguobacterium sp. AT1b] Length = 337 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 42/311 (13%), Positives = 89/311 (28%), Gaps = 44/311 (14%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI----------- 119 L I ++ + + + R ++ + I Sbjct: 27 LPAFIQQFFHHLAAKHYSKQTAQRYVYDVLDFFRWVELVSGTELEPETIDLPSFTEIDHA 86 Query: 120 ------RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 ++ PS + L++++ LF + + +NP +VERPKR Sbjct: 87 GAEAYATYLALELENAPSVINRKLSTLQSLFNYLIETNQATVNPFQTVERPKRGKRNPVY 146 Query: 174 WTKEDMQQFK---------------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218 T+ + F + ++ L + L +G+R S+ + Sbjct: 147 LTESEWLDFSTLVRSNVGMTNREASWYEMNRARDFLIIQLLGLTGMRVSELVGLNWSDIN 206 Query: 219 NNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKA 275 +I+ + + + LL+ F N Q++ K Sbjct: 207 LETGTIRVIGKGDKERLIPIAGPLLPLLSEYRHTSSEGAVFQNEKGQRIAVRTVQHMLKG 266 Query: 276 KATKAGV--------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 + + H +R A+ A G + G ++V + Y D Sbjct: 267 HIDRLKPYLPFLSHKQVTPHKLRHTFASRLAMGGVDVLTIQQLLGHESVATTQVYAHIGD 326 Query: 328 -RIRLGIKNSR 337 R + I + Sbjct: 327 ERKKHAISGLQ 337 >gi|313896449|ref|ZP_07830000.1| site-specific recombinase, phage integrase family [Selenomonas sp. oral taxon 137 str. F0430] gi|312974873|gb|EFR40337.1| site-specific recombinase, phage integrase family [Selenomonas sp. oral taxon 137 str. F0430] Length = 331 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 38/264 (14%), Positives = 85/264 (32%), Gaps = 14/264 (5%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRK 127 + L++ + + + + +++ +++ D +ITT +R E + Sbjct: 54 EELLTMFTAAKKVEGCSERTLNYYQTTLLKVLGSF-DKHITRITTDDLRKYLSEYQEEHR 112 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + S+ + F W + Y+ +P + + K +T E ++Q + + Sbjct: 113 CSKSNIDNIRRILSSFFAWLEEENYILKSPVRRIHKIKTAKVVKETYTDEALEQMRDNCT 172 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLA 246 S+ + L +G+R + R + I K V L Sbjct: 173 -NSRDLAMIDLLASTGMRVGELVRLNRSDVDFESRECIVFGKGSKERPVYFDARTKIHLK 231 Query: 247 MTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299 + +++ + I + K G+ K H R+ AT + D Sbjct: 232 NYLDSRIDDNPALFVSLQKPHNRLHISGVEIRLRDMGKKLGIPKVHPHKFRRTLATRAID 291 Query: 300 AGATAHELMATYGWKTVDQAETYT 323 G ++ G +D Y Sbjct: 292 KGMPIEQVQQLLGHSKIDTTMEYA 315 >gi|254478357|ref|ZP_05091736.1| site-specific recombinase, phage integrase family [Carboxydibrachium pacificum DSM 12653] gi|214035715|gb|EEB76410.1| site-specific recombinase, phage integrase family [Carboxydibrachium pacificum DSM 12653] Length = 306 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 37/281 (13%), Positives = 76/281 (27%), Gaps = 29/281 (10%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSG---- 122 LK+ I E+ + + +L + +E + + HI++ Sbjct: 3 LKFAIQEFLEDRKFKNLTEITVKGYERSLKAFHDYIIQQHQILNIEDVRPYHIKAYLSYR 62 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-------EGIRPWT 175 + K+ + + +++ F + V++ + NP + + Sbjct: 63 KKELKNNAETINHEIRNLKAFFNYFVKERVINENPVTVPVQKTDTKIETFTDYHIRQMLR 122 Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIIT 234 Q+ + + + LL +G+R + C + + K T Sbjct: 123 YYRKQKQRGDNFYAYRGYIMILILLGTGIRLGEMCNLRWKDIDFVNAKMTVIGKGRRQRT 182 Query: 235 VELPDGFMKLLAMTPIGK-------------ETFFINNDKQKMNATQFSIWFKAKATKAG 281 + L D K L + + F K Sbjct: 183 IPLTDNLKKELMEWRFYVEKKLGNVTEDSFVIPTQTGKRMNENSVKTFFQRLKKIMNFRD 242 Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 V S H R A +G L G T++ Y Sbjct: 243 VRLSPHTFRHTFAKQWILSGGDVFSLQRILGHSTIEVTNKY 283 >gi|312880071|ref|ZP_07739871.1| integrase family protein [Aminomonas paucivorans DSM 12260] gi|310783362|gb|EFQ23760.1| integrase family protein [Aminomonas paucivorans DSM 12260] Length = 308 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 36/267 (13%), Positives = 82/267 (30%), Gaps = 22/267 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 + ++ ++ S + ++ + SS + Sbjct: 33 RGASEHTLRAYRSDLTHFEDFCARRGKPPCPPEENELTLFLRELQRQGLAASSVQRRAAC 92 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLA 195 +R ++ Q A + + P R + T+ ++ + + R Sbjct: 93 LRSFLRFLQEQGEPAASR-EPLSLPDRPAPLPQILTEGEVGRLLETCDGSASLDLRDRAL 151 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT------ 248 FE + GLR S++C ++ + +++ Q V L K + Sbjct: 152 FELIYGCGLRASEACSLRLRDVDFTGGTLRVQGKGNKTRIVPLLGEVRKAVERYLAAGRG 211 Query: 249 --PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGAT 303 P E ++ +++ + + + +AG+ H +R AT G Sbjct: 212 EAPGDPEALLLSRNRRPLRREDLWRIVRRRGVQAGIPSSRLHPHILRHSFATHLLRHGMD 271 Query: 304 AHELMATYGWKTVDQAETYTKGADRIR 330 L + G ++ E YT +R Sbjct: 272 LRTLQSLLGHASLGTTEKYTHFDQELR 298 >gi|229060296|ref|ZP_04197663.1| DNA integration/recombination/invertion protein [Bacillus cereus AH603] gi|228719023|gb|EEL70639.1| DNA integration/recombination/invertion protein [Bacillus cereus AH603] Length = 369 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 52/368 (14%), Positives = 115/368 (31%), Gaps = 48/368 (13%) Query: 17 RHGKIIYYF-------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 + G G R+ + A ++ + +I + Sbjct: 7 KRGNKYCIVIDIGPDPETGKRRQKWFSGYNTKKEAQADVAKKITELNEGTFIEPSK---V 63 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128 TLK ++ + + S+ ++ + ++ + +I G K+ HI+ +S Sbjct: 64 TLKDYLNHWLE-IKSMSIEESTFACYRAFINQHVIPSIGMITLHKLNVMHIQKCYKSSID 122 Query: 129 TPSSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + L ++ AV+Q ++ NP E PK++ I+ WT+E++++F Sbjct: 123 KGITNNSILLMHRILKSSLNLAVKQNVLSRNPAAFAEIPKKEKTSIQTWTEEEVKKFLLH 182 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--------------TGT 231 E S+ + + + +G+R + Q + ++ + + Sbjct: 183 SQE-SRYHIGYLLAITTGMRLGEVLGLRWQDVDFEKHTVTINQTSGHNNKIKKTAKTNSS 241 Query: 232 IITVELPDGFMKLLAMTPIGKET--------------FFINNDKQKMNATQFSIWFKAKA 277 T+ +P ++ L I N + F F Sbjct: 242 KRTIPVPKETIESLKKHKITINKEKLRLGSAYQDLELINCNEFGMVIKRATFRNHFIRTT 301 Query: 278 TKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKN 335 AG+ H +R ATI G A + G + Y+ + + Sbjct: 302 HNAGIKEIKFHDLRHTHATILLKQGVNAKIISERLGHTDISMTLNVYSHVLPN--MQEEA 359 Query: 336 SRRISSVV 343 + + Sbjct: 360 VKNFGKSI 367 >gi|73539788|ref|YP_294308.1| site-specific tyrosine recombinase XerC [Ralstonia eutropha JMP134] gi|72117201|gb|AAZ59464.1| tyrosine recombinase XerC subunit [Ralstonia eutropha JMP134] Length = 339 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 48/317 (15%), Positives = 95/317 (29%), Gaps = 44/317 (13%) Query: 74 LISEYRKSAH-WGSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVESRKH 128 ++ Y LA ++ S+ + + + T+HIR+ Sbjct: 14 IVQRYLAWLEGSRKLAGHTISSYRRDLTVLQAHAAKHAPGIALLALQTRHIRAFAARMHG 73 Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKED----MQ 180 +S + L++ R + WA + V NP V P+ + + E + Sbjct: 74 EGLAGTSIARTLSAWRGFYLWAAQHGLGVQANPVDGVRAPRSGHRLPKALSVEHAVALVS 133 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----------- 229 + + + +E SGLR ++ + V++ + + + Sbjct: 134 HPAGTDAAALRDQAVWELFYSSGLRLAELVQLDVRYERLDGYESAGWLDLSGAELTVTGK 193 Query: 230 -GTIITVELPDGFMKLLAMTPIGKETFFIN-------------NDKQKMNATQFSIWFKA 275 TV + M+ L +E +++ + K Sbjct: 194 GSRRRTVPVGSKAMEALRAWLGVREQLLRPGAAPEDASALFLGARGHRLSMRVVQMRLKQ 253 Query: 276 KATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG- 332 +A +AGV H +R AT + + G ++ + YT D L Sbjct: 254 QAIRAGVPADVHPHMLRHSFATHMLQSSGDLRAVQELLGHASIATTQIYT-SLDFQHLAK 312 Query: 333 --IKNSRRISSVVDSDD 347 K R S D Sbjct: 313 VYDKAHPRAGRAAPSKD 329 >gi|197104212|ref|YP_002129589.1| probable integrase/recombinase DNA recombination protein [Phenylobacterium zucineum HLK1] gi|196477632|gb|ACG77160.1| probable integrase/recombinase DNA recombination protein [Phenylobacterium zucineum HLK1] Length = 305 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 47/305 (15%), Positives = 87/305 (28%), Gaps = 37/305 (12%) Query: 72 KWLISEYRKSAHWGSLAV-NSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKH 128 + + A N+ ++ D T + + + Sbjct: 6 AAWTEAFLEMMAVERAAARNTLSAYGRDLADAAGFLAGLGRDLSDATAEDVEAYFADLGA 65 Query: 129 TPSSAIQFLTSMR---VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 SA +++ + + + +P VE PK+ + ++E+M + + Sbjct: 66 RGLSAATAARRRAAVRQFYRFVLGEGWRGDDPSRRVEAPKKGRSLPKVLSREEMDRLIAA 125 Query: 186 W------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELP 238 S + E SGLR S+ + L + I K G L Sbjct: 126 AGARDGASHALRLACMVELAYASGLRISELTGLTLAALARDPAYLIVKGKGGKERLAPLN 185 Query: 239 DGFMKLLAMT------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--- 283 + + F ++ +F+ A AG++ Sbjct: 186 EPARAAVKAYLEVRPAFLPKGDTANPWLFPSRGKGGRLTPRRFAQLLDEAAADAGIDPGR 245 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343 S H +R AT + GA + G + + YT A R+S VV Sbjct: 246 VSPHVLRHAFATHLLEGGADLRVVQKLLGHADIATTQIYTHVAS---------DRLSEVV 296 Query: 344 DSDDP 348 S P Sbjct: 297 RSKHP 301 >gi|28558853|ref|NP_788113.1| putative integrase/recombinase [Ruegeria sp. PR1b] gi|22726404|gb|AAN05199.1| RC126 [Ruegeria sp. PR1b] Length = 313 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 35/297 (11%), Positives = 81/297 (27%), Gaps = 36/297 (12%) Query: 82 AHWGSLAVNSRISFESYFDQIIRK-----SGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136 L+ +S ++ + D + E + +P++ + Sbjct: 14 REQLGLSEHSLRAYRQDLAAFAKFKQKAKLNDPPLAADIIDFQKDLREEQGVSPATIRRR 73 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-------------------EGIRPWTKE 177 L ++R + W + +P + R + I Sbjct: 74 LVTLRSYYGWLAENDTSCPSPFEGLRLDMRVPKRLPRPVDRPTLGAVFRSAQHIVQLDPS 133 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ---------HLQNNIFSIKTQK 228 D L L+ +GLR + V ++ +T Sbjct: 134 DELSVPKEIPAAQITGLIARLLIVTGLRIGELTSLRVCDVSGAATQIRVRGKGDRERTVY 193 Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 F + + F N+ ++ F + + + + + Sbjct: 194 VANDRLQTDFKRFWEDRCDAAGSQAWLFTNSMGDRLTPQAFRKRLRTLSKSLRIEPHLTP 253 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSRRISSV 342 H R +AT+ + G + G ++ E YTK +D + + + ++ V Sbjct: 254 HRFRHSAATLLIEEGVDIRLVQRLLGHASIATTEIYTKVSDNSLSSAVSAADTLAKV 310 >gi|3128300|gb|AAC16152.1| integrase/recombinase [Rhodobacter capsulatus SB 1003] Length = 344 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 81/323 (25%), Positives = 134/323 (41%), Gaps = 20/323 (6%) Query: 24 YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83 Y R R LP H F+ A+ +A T TL I + S Sbjct: 4 YHRASGIRLPDLPETH-PDFVAAWAAAEASLTGPAALARKAPVAAGTLAAAIRAEKTSRP 62 Query: 84 WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL 143 + L+ + FD + G + + ++HI + ++ + +A + L + R + Sbjct: 63 FAELSSLYQSILRKDFDAMEAAYGTAPLKGLRSRHIEADLDKL--SADAANKRLKAWRRV 120 Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203 A R+ + +P + V R K KTEG WT+++++QF++ W G+ R FE + ++G Sbjct: 121 MGGARRRGEIESDPSIEVRRIKVKTEGFPAWTQDEVEQFRARWPIGTVQRACFELVCWTG 180 Query: 204 LRCSDSCRAGVQHLQN---------------NIFSIKTQKTGTIITVELPDGFMKLLAMT 248 R +D+ R G ++ + + + LA Sbjct: 181 ARTNDAVRLGPCNIDHGGVLSYRQSKTANPAMVPWSNPLPGYAAAWAAERETVKAALACL 240 Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELM 308 G N + + A AGV KSAHG+RK+ T A+AG +AH +M Sbjct: 241 SGGFTFLEANGRVR--SVKGLGNVISEAARGAGVEKSAHGLRKYRLTAIAEAGGSAHAIM 298 Query: 309 ATYGWKTVDQAETYTKGADRIRL 331 A G +T+ +AE YT+ ADR RL Sbjct: 299 AWGGHQTLVEAEHYTRAADRRRL 321 >gi|189499552|ref|YP_001959022.1| integrase family protein [Chlorobium phaeobacteroides BS1] gi|189494993|gb|ACE03541.1| integrase family protein [Chlorobium phaeobacteroides BS1] Length = 330 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 38/305 (12%), Positives = 79/305 (25%), Gaps = 49/305 (16%) Query: 70 TLKW--LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-----GDFD-----YRKITT 116 TL + E+ + + ++ ++ Q G+ +I Sbjct: 10 TLSEYYALGEFVEYMRAQRKYSEHTCKAYSKDITQFYEFLSLQHGGEKAADPGLVTRIDM 69 Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE------- 169 + + + P S + L S++ + + + + ++ V P+ Sbjct: 70 RLFLGFLLKKGLQPKSIARKLASVKSFYNYLLETGRIKVSVPAQVVTPRFSKTVPGFLNE 129 Query: 170 ------------GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217 + + S+ R E L GLR S+ + + Sbjct: 130 EQTETLFDHILAAPQHLSGSSKNTRYEDEFTYSRDRAILELLYGCGLRISEVVHLEREQV 189 Query: 218 QNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFINNDK--------------Q 262 +K + L ++ L K FF Sbjct: 190 NIEQGFMKINGKGNKQRVLPLGSYAVEALKNYFEVKRNFFRMKKGEVSAAAYVFVTKKGI 249 Query: 263 KMNATQFSIWFKAKATKA-GVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320 + K + + K+ H +R AT + GA + G + E Sbjct: 250 GIYPVLVQRLTKKYLSAVTELKYKNPHALRHSFATHMLNNGADLKSVSEMLGHANLTTTE 309 Query: 321 TYTKG 325 YT Sbjct: 310 IYTHV 314 >gi|313204183|ref|YP_004042840.1| integrase family protein [Paludibacter propionicigenes WB4] gi|312443499|gb|ADQ79855.1| integrase family protein [Paludibacter propionicigenes WB4] Length = 293 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 34/276 (12%), Positives = 95/276 (34%), Gaps = 24/276 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRKH- 128 ++E+ + + + + ++ +S+ + Q +FD + ++ I+ + S Sbjct: 2 MNEFLQYLQYEKNYSSHTVLSYNTDLIQFCNFLNVTPDEFDPNSVNSQQIQQWILSLMSV 61 Query: 129 --TPSSAIQFLTSMRVLFKWA-----VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + + + +++++ + + + ++P T Sbjct: 62 DLSARTLSRKISTLKSFWHFLLSRRLSKHNPTLKIILPKTKKPIPAFFKENEMTAALDNS 121 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KTGTIITVELPDG 240 K E ++ RL E +G+R S+ + + ++ +I+ K + + Sbjct: 122 MKPDSFEYTRNRLILETFYLTGIRLSELLNIQDKDIDHSAGTIRVIGKRNKERIIPIDKS 181 Query: 241 FMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGVR 290 + + I + F+ N+ +KM ++ +S H +R Sbjct: 182 LINDIERYITLRNESIDIFEPNLFVRNNGKKMYPKMLYNIVHENMSEVSSLHKRSPHVLR 241 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 AT + GA + + G ++ + YT + Sbjct: 242 HTFATSLLNGGADINAVKELLGHSSLSATQVYTHTS 277 >gi|309807963|ref|ZP_07701891.1| site-specific recombinase, phage integrase family [Lactobacillus iners LactinV 01V1-a] gi|308168814|gb|EFO70904.1| site-specific recombinase, phage integrase family [Lactobacillus iners LactinV 01V1-a] Length = 166 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 27/161 (16%), Positives = 50/161 (31%), Gaps = 15/161 (9%) Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-------------SI 224 + + G + R E L +G+R S+ + + Sbjct: 1 MINMPDTTTDLGIRDRAILETLYATGMRVSEVINLNEDSIHEELHLIKVFGKGSKQRLIP 60 Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284 + + I K L + ++ F+N+ K+ K AG+NK Sbjct: 61 ISNVAMSWIKKYQITVRNKTLLESGKFEKAIFLNSRGGKITRQAVWQMIKRYCQLAGINK 120 Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + H +R AT + GA + G + + YT Sbjct: 121 NVTPHTLRHTFATHLLENGADLRIVQEILGHSDISTTQIYT 161 >gi|298346742|ref|YP_003719429.1| integrase/recombinase XerD family protein [Mobiluncus curtisii ATCC 43063] gi|298236803|gb|ADI67935.1| integrase/recombinase XerD family protein [Mobiluncus curtisii ATCC 43063] Length = 309 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 47/275 (17%), Positives = 85/275 (30%), Gaps = 32/275 (11%) Query: 85 GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR--------KHTPSSA 133 + ++ ++ + I G ++T + S + PSSA Sbjct: 19 RGASPHTVAAYTRDLRRYITFLIANGVNSLDEVTLPLLESFARALEAGFGDYAAVAPSSA 78 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-----WSE 188 + + S+R ++A V NP + K T E++Q Sbjct: 79 RRAIASVRSWHRYAYETGAVRANPTKGIAPAKVGAHLPTVLTVEEVQTLLEAASAPGDDN 138 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD--------- 239 + R EFL +G R S++ V + + + G L Sbjct: 139 ALRDRALLEFLYATGARISEAVNLAVDDINLDEEIPLVRLFGKGRKERLSMLGHLAKDAL 198 Query: 240 -----GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGVRKF 292 LA + F+N + ++ +A A +A V H +R Sbjct: 199 EAYLVRVRPRLAEKGRSQGRVFLNTLGRPLSRQSAWAIIQAAAQRAQITVPVGPHTLRHC 258 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 AT GA + G +V + YTK ++ Sbjct: 259 FATHLLQGGADVRAVQELLGHASVTTTQIYTKVSN 293 >gi|291457408|ref|ZP_06596798.1| integrase/recombinase, phage integrase family [Bifidobacterium breve DSM 20213] gi|322691668|ref|YP_004221238.1| phage integrase [Bifidobacterium longum subsp. longum JCM 1217] gi|291381243|gb|EFE88761.1| integrase/recombinase, phage integrase family [Bifidobacterium breve DSM 20213] gi|320456524|dbj|BAJ67146.1| phage integrase [Bifidobacterium longum subsp. longum JCM 1217] Length = 319 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 35/279 (12%), Positives = 83/279 (29%), Gaps = 15/279 (5%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESRKHT 129 L++ + + + + +ES + + +I + +R R Sbjct: 44 LLTLFLTAKEVEGCSPKTIAYYESTLQHMTQALA-KPCTRINSDDLREYLNRYENERHAG 102 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + M F W ++Y+ +P + R K + E+++ + Sbjct: 103 KVTIDNIRRIMSSFFAWLEDEDYIVKSPVRRIHRVKTAVMAKEVLSDENLETLRDRCGT- 161 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKLLAMT 248 + + L +G+R + + + T K V L Sbjct: 162 LRDLAIVDILASTGMRVGELVGLNIADVNLQERECLVTGKGNKQRPVYFDARTKLHLTAY 221 Query: 249 PIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301 + N D +++ + AG+++ H R+ AT + D G Sbjct: 222 LQSRNDSNPALFVALNGDGDRISIGGIESRLRQLGKDAGIHRVHPHKFRRTLATHAIDKG 281 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 ++ G +D Y ++ + + R + Sbjct: 282 MPIEQVQKLLGHARIDTTMHYV-MVNQNNVKASHRRYLE 319 >gi|118473200|ref|YP_886852.1| site-specific tyrosine recombinase XerC [Mycobacterium smegmatis str. MC2 155] gi|166918888|sp|A0QVB4|XERC_MYCS2 RecName: Full=Tyrosine recombinase xerC gi|118174487|gb|ABK75383.1| tyrosine recombinase XerC [Mycobacterium smegmatis str. MC2 155] Length = 300 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 38/292 (13%), Positives = 93/292 (31%), Gaps = 31/292 (10%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRKHTP 130 Y + ++R ++ + G+ +++ +RS + + + Sbjct: 8 FDAYLGLE--RGHSDHTRRAYRGDLTALFDFVEQRTGERSLARVSLPLLRSWLAEQSASG 65 Query: 131 S---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + + + +S++ WA+R+ + ++P ++ PK + ++ + Sbjct: 66 AARTTLARRTSSVKTFCAWALRRGLIGVDPAARLQVPKARRTLPAVLRRDQALDALDAVN 125 Query: 188 EG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP 238 G + RL E L +G+R S+ C + + + ++ K TV Sbjct: 126 SGAQEGDPIALRDRLIVELLYATGIRVSELCGLDIDDIDTSRRVVRVLGKGNKQRTVPFG 185 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAG--VNKSA 286 + L + + Q + + Sbjct: 186 EPAHAALTAWLTEGRPQLSIPESGPALLLGARGRRLDPRQARTVVHQTVSAVNGAPDIGP 245 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKNSR 337 HG+R +AT + GA + G ++ + YT +R+R + Sbjct: 246 HGLRHSAATHLLEGGADLRIVQELLGHTSLATTQLYTHVTVERLRAVHDQAH 297 >gi|318604128|emb|CBY25626.1| putative bacteriophage integrase [Yersinia enterocolitica subsp. palearctica Y11] Length = 351 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 46/320 (14%), Positives = 95/320 (29%), Gaps = 23/320 (7%) Query: 19 GKII--YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76 GK + GRRIR AY + ++ ++ + T+ L+ Sbjct: 9 GKWQVQCFPNGRDGRRIR-KQFSTKGEALAYERHVKDEAEQKPWLGDKQD-KRTVSDLVD 66 Query: 77 EYRKSAHWG-----SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI----RSGVESRK 127 + ++ ++ES + + + + K + + +K Sbjct: 67 TWHRAHGVTLEDGDRRKDAMTYAYESMGKPLATEFNAKLFSQYREKRLSGELQRNTRVKK 126 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK---TEGIRPWTKEDMQQFKS 184 +P + L R +F +R + L RP R + D + Sbjct: 127 VSPRTVNLELAYFRAMFNELIRLDEWKAEHPLKNVRPYRTDESEMAFLRLEEIDTLLKEC 186 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 S S + L +G R S++ + + + + K T+ + + +K Sbjct: 187 ANSSASDLLTVVKICLATGARWSEAESLSLSQITKDRITFIKTKGKKNRTIPVSEELIKS 246 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATA 304 + G+ F + F K + +H +R A+ AG Sbjct: 247 IPKKESGEPLFVSC-------YSAFRTALKRAKINLPAGQLSHVLRHTFASHFMMAGGNI 299 Query: 305 HELMATYGWKTVDQAETYTK 324 L G + Y+ Sbjct: 300 LVLQRILGHTDIKMTMRYSH 319 >gi|313892498|ref|ZP_07826087.1| site-specific recombinase, phage integrase family [Dialister microaerophilus UPII 345-E] gi|313119077|gb|EFR42280.1| site-specific recombinase, phage integrase family [Dialister microaerophilus UPII 345-E] Length = 372 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 47/355 (13%), Positives = 118/355 (33%), Gaps = 33/355 (9%) Query: 17 RHGKIIYYFRKGHGRRI--RLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 R G + G R+ T + L + + T Sbjct: 19 RKGHFRAFLDLGKHPVTHKRVRKTFSGTSRAEVLKKLQNALADKNKGVLTHTSNTPFNVF 78 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESR----KHT 129 + + ++ ++ ++++ ++ I D +I I + K++ Sbjct: 79 ALHFLE-LKKNTIKESTFTYYKTHIEKDFIPILKDTPISRIDVNKINQLLNYMLNVKKNS 137 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT--EGIRPWTKEDMQQFKSFWS 187 P+S T++ +FK A+ + + NP + + + I P+TK+++ + Sbjct: 138 PTSIKTKKTTLHAIFKQAIYESLITKNPVEFSIKLSKSRAKKEIIPFTKQEISSLLAASK 197 Query: 188 EGSQPRL---AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------------ 232 + + ++ +G+R + + +I +++ + Sbjct: 198 DNNSLYTLYPIIRLVIETGMRRGEVLGLHWDDIDYTKNTITIKRSVSSFGVTSTKTTSSY 257 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRK 291 T+ + +++L F+N ++ S FK + G+ N+ H +R Sbjct: 258 RTLIVSKDTLEMLKKYKKHDTKVFVNAIYSYLSPNLLSKKFKILCDELGIVNQHFHNLRH 317 Query: 292 FSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVDS 345 +AT + G + G + TYT + ++ S+++ S Sbjct: 318 TNATWLINQGVDIATVSRRLGHSNISTTLNTYTHFI------PEADKKASTIIGS 366 >gi|257453686|ref|ZP_05618973.1| tyrosine recombinase XerC [Enhydrobacter aerosaccus SK60] gi|257448920|gb|EEV23876.1| tyrosine recombinase XerC [Enhydrobacter aerosaccus SK60] Length = 345 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 37/278 (13%), Positives = 84/278 (30%), Gaps = 26/278 (9%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESR---- 126 L++ + + + S+ + + IT + + + R Sbjct: 49 ALVNRWLAELSNKRYSAATIKSYRQALQPFLAYCYEQHTELCHITRQQLSDFLIRRLDVD 108 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK--- 183 K + SS+ LT +R L+KW + Q+ + +NP ++ + + + Q Sbjct: 109 KISKSSSQYELTVLRQLYKWLIVQQLMTLNPTTTIRLKRAPRPLPTLLDIDVLSQLLDQA 168 Query: 184 -----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----------QK 228 + + E L SGLR + + + + ++ Sbjct: 169 APEDSHEARLWIRDKAMLELLYGSGLRVGELVGLNMSDIDKSQRLLRVLGKGGKTRIVPI 228 Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 + + L + F +++ + K +A +AGV + Sbjct: 229 GEKAWQALINYLPHRSLWVEEQDPAVFVSERYGTRISTRTVQLRIKLQAKRAGVAQDLYP 288 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R A+ + G + + YT Sbjct: 289 HLLRHCFASHILSDSGDLRGVQELLGHSDISTTQIYTH 326 >gi|257090583|ref|ZP_05584944.1| phage integrase [Enterococcus faecalis CH188] gi|294619912|ref|ZP_06699288.1| site-specific recombinase, phage integrase family [Enterococcus faecium E1679] gi|256999395|gb|EEU85915.1| phage integrase [Enterococcus faecalis CH188] gi|291593849|gb|EFF25347.1| site-specific recombinase, phage integrase family [Enterococcus faecium E1679] Length = 380 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 43/363 (11%), Positives = 112/363 (30%), Gaps = 45/363 (12%) Query: 11 VTKERTRHGKIIYYFR--KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI---NSPR 65 ++K + ++G++ + ++ R + A R I + Sbjct: 4 ISKYKKKNGQVAWMYKGHIATDPRTGEKINTTRRGFSSKQEAQKDYDEYRHQILYGVKKK 63 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRI-SFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 T + L +E+ S+ ++ S +QI+ G I+ + + V+ Sbjct: 64 APDMTFEDLYNEWIAHQR-TSVKASTIAISVRYANNQILPAFGKLKLSNISVPYCQKVVD 122 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG--IRPWTKEDMQQF 182 S + ++ V +Y+ NP P++K + ++KE++ Sbjct: 123 EWHSKYESYDYMRKQTAQILRYGVAMQYIDNNPMEKTLLPRKKEYEKNRKFYSKEELNDL 182 Query: 183 KSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--------------- 225 + + + F L Y+G+R S+ + + + Sbjct: 183 LDAFKDFGNMKQYAFFRLLAYTGMRKSEVLALQWKDIDTFNKELHVNKTLAVDEFGNVII 242 Query: 226 --TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN---------------ATQ 268 + + + L + +L + ++ ++ + Sbjct: 243 QSPKTRASRRVISLDTETLSILNNWKLQQKEEYLKLGYNTSSKEQHVFTTVKNTLYIPNT 302 Query: 269 FSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGA 326 + W + K + + + HG R A++ +AG + + G + + Y Sbjct: 303 VNDWLRYILKKYNLPRITPHGFRHTHASLLLEAGESVKVVQQRLGHENSKVTLDIYAHIT 362 Query: 327 DRI 329 + Sbjct: 363 NNA 365 >gi|301299429|ref|ZP_07205708.1| putative toxin-antitoxin system, toxin component, PIN family [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852965|gb|EFK80570.1| putative toxin-antitoxin system, toxin component, PIN family [Lactobacillus salivarius ACS-116-V-Col5a] Length = 384 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 51/383 (13%), Positives = 108/383 (28%), Gaps = 52/383 (13%) Query: 11 VTKERTRHGKIIYYF------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY-INS 63 + K + G Y F G++ R T A + E + + Sbjct: 4 IKKYTKKDGSKAYMFNLYLGTDPVTGKQRRTTRRGFRTIAEAKTALSRLELEVIENGLPT 63 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG 122 ++K T + + ++ ++ + + + QI+ G KI T + Sbjct: 64 SKRKIMTFDEAYKMWFEQYK-TTVKESTAYTQNNIINVQILPYFGSLRVDKIDTAFCQKQ 122 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 V + + R + +A + + NP V PK++ + + Sbjct: 123 VNRIFKNLKNYNNVINITRQILDYAKIMKQIKTNPMNDVIVPKKRKTLDDTDNQVNFYTK 182 Query: 183 KS--------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI------------- 221 + Q + F L ++G+R + + N Sbjct: 183 EQLKVFLGALKKHTTYQMYVVFRVLAFTGMRKGELAALKWSDIDFNNETITIDKTVAIDS 242 Query: 222 ----FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF------SI 271 + +I T+ + D + L K F Sbjct: 243 NGGLHIQAPKTRKSIRTISVDDTTLNALRTWKNELRKELFKQGKNIDKGDGFIFHRNNGN 302 Query: 272 WFKAK--------ATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-T 321 + K + + HG R A++ ++GA+ E+ G + + Sbjct: 303 FINKYIDQFLPSFLRKYNLPQIKPHGFRHTHASLLFESGASIKEVQDRLGHENIKTTMDI 362 Query: 322 YTKGADRIRLGIKNSRRISSVVD 344 YT R K + + + +D Sbjct: 363 YTHVTKSAR--EKTAEKFAKYID 383 >gi|294783592|ref|ZP_06748916.1| phage integrase family site-specific recombinase [Fusobacterium sp. 1_1_41FAA] gi|294480470|gb|EFG28247.1| phage integrase family site-specific recombinase [Fusobacterium sp. 1_1_41FAA] Length = 371 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 48/376 (12%), Positives = 121/376 (32%), Gaps = 39/376 (10%) Query: 1 MTPSLRLPPFVTKERTRHGKIIYY--FRKGH---GRRIRLPYPHESTFIPAYMSALTGST 55 M T +GK Y G G++I+ + ++ + + Sbjct: 1 MQKKKSNGEGSIITTTLNGKPYYKASVTIGFDSAGKQIKKSFG---SYKKSVVLEKMNKV 57 Query: 56 PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRK-SGDFDYRK 113 N T L ++ + ++ N+ +E+ + +I+ + + Sbjct: 58 KYEAKNNLLSNSNITFGDLFKQWIFNHKKVEVSDNTFGEYETAYRLRILPYNISNKRVNQ 117 Query: 114 ITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEG 170 IT ++ K + ++ + + FK+A+ Q + NPCL V + ++K E Sbjct: 118 ITLNDLQMYFNELQEKFSTNTIKKAYIQIHSCFKFAIIQGILNKNPCLGVTLQKEKKKEK 177 Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--------- 221 ++K++ + + ++ F ++GLR + ++ I Sbjct: 178 YNVFSKQEQELILNTLNKKDIVDCLIYFTFFTGLRLGEVLALKWTDVKGKILSVERQYNR 237 Query: 222 -------------FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ 268 + K KT ++ +++ + + + Sbjct: 238 TVTIKDIGVSKLTYEFKDLKTKNSKREIPLPDKALVILEGIPKTYELIFSDEGKPIERKR 297 Query: 269 FSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGA 326 A K + ++S H +R AT + + + G +D YT Sbjct: 298 PQRRITALCKKLNLEHRSFHSIRHSYATRLFELDVPIKTVQSLMGHSDMDTTMNIYTHVM 357 Query: 327 DRIRLGIKNSRRISSV 342 ++ + +++++ Sbjct: 358 QDKKM--EIIDKLNNL 371 >gi|238917723|ref|YP_002931240.1| integrase/recombinase XerC [Eubacterium eligens ATCC 27750] gi|238873083|gb|ACR72793.1| integrase/recombinase XerC [Eubacterium eligens ATCC 27750] Length = 400 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 49/373 (13%), Positives = 117/373 (31%), Gaps = 46/373 (12%) Query: 5 LRLPPFVTKERTRHGKIIYYF----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60 + +P + + ++ G F G ++I+ Y + Sbjct: 1 MNMPAY---KDSKTGTWFVKFYCKDWTGENKQIKKRGFATKREALDY--------ERNYK 49 Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHI 119 I T Y + + +N+ ++ E D +I+ + +IT + Sbjct: 50 IRQENNLDMTFGEFWKLYTEDVK-NYVKLNTWLTKEHIVDTKILPYFRNLKMNEITPGDV 108 Query: 120 RSGVESR---------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP-KRKTE 169 R ++ + + +F A R + NP + + + Sbjct: 109 RKWQNEMVAFRYENGKCYSQTYKKTMHNILSAIFNHACRFYNLKSNPARQAGNMGREEKK 168 Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229 + WT E+ ++F + AFE L ++G+R + ++ +++ K+ Sbjct: 169 EMLFWTTEEYKKFSEAVIDKPVSFYAFEMLYWTGMRLGELLALTMEDFDFEKNTVRINKS 228 Query: 230 GTI----------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273 T++LP + + + + + Sbjct: 229 YQRLQGQDVITTPKTPKSNRTIKLPKFLAEEMQEYFAMLYDQTPTDRIFLVTKSFLHHEM 288 Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 + +GV K H +R + D G +A + G +++D Y+ ++ Sbjct: 289 ERGCKLSGVKKIRIHDLRHSHISHLIDLGFSAVAIADRVGHESIDITYRYSHLFPSKQVA 348 Query: 333 IKNSRRISSVVDS 345 + + R+ +V S Sbjct: 349 M--ADRLDAVNAS 359 >gi|269926039|ref|YP_003322662.1| integrase family protein [Thermobaculum terrenum ATCC BAA-798] gi|269789699|gb|ACZ41840.1| integrase family protein [Thermobaculum terrenum ATCC BAA-798] Length = 363 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 41/348 (11%), Positives = 97/348 (27%), Gaps = 40/348 (11%) Query: 13 KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 K R + +G R + + L + P + T+ Sbjct: 8 KIIKRGNAYRAQVQI-NGVRHSITGKTRAEVQRKRRELLAAADQ----GIMPARTRVTVA 62 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR---KH 128 +S + + + + +++ I+ G K+ H++ Sbjct: 63 EFLSHWLEIIKPQ-VRPATLADYQNSVRNHIVPALGTIKLTKLEPAHLQELYSQLLAKGL 121 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + + ++ K A R + N PK + ++ T E ++ Sbjct: 122 SAKTVRNIHGTIHKAIKDAARWGMLPRNVADIARPPKVSRQELQCLTPEQVRLLMQA-CA 180 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------------ITV 235 G++ + +G R + + ++ + T +V Sbjct: 181 GTRYEPLLGLAIATGARQGELLGLRWADIDLQRGVVQITRQLTRQGTFSEPKTSSGKRSV 240 Query: 236 ELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 +P ++LL + F N M+A + +AG Sbjct: 241 HVPVSTVELLRRHRSLQLQERLSAGDRWQDQGLVFANTLGGPMDARNLIRAWHRILQQAG 300 Query: 282 VNKSA-HGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD 327 + + H +R SA++ G + + G + + Y + Sbjct: 301 LPRMPFHSLRHTSASLLLRQGVSPRLIQQRLGHADIAVTLQVYAHLVE 348 >gi|254451305|ref|ZP_05064742.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 238] gi|198265711|gb|EDY89981.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 238] Length = 371 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 46/320 (14%), Positives = 102/320 (31%), Gaps = 16/320 (5%) Query: 9 PFVTKERTRHGKIIYYFRKGHG--RRIRLPYPHESTFIPAYMSALT-GSTPKREYINSPR 65 + + K Y+ + G +RI + + A +AL R + + Sbjct: 38 KGLVLFVGKRSKTWYFQKDVGGQTKRILIGRFPIISAQAARQTALGFALEMGRGAGKAAQ 97 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 TL+ + Y + +++ + ++ +I+ Sbjct: 98 IGAPTLEAAMEVYLARPKLR--SETNKVGMRAQLTLHLKDWMRLPLDEISKAMTVRRHHD 155 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 +PS+A L S R ++ A R + P +++E + K +G R Sbjct: 156 MAGSPSAANHVLRSFRAIYNHARRTGDLPECPTMAIEWFEDKPDG-RIIENLKHWWKTID 214 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 R+ +E LL++GLR ++ + + + K G + + ++L Sbjct: 215 DLPNPIHRVFYELLLFTGLRKTEVFTLKWDQIHEDRIHLPMTKNGRSFDLPILQLHHEIL 274 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAH 305 A + + S + + H R+ AT++ +AG Sbjct: 275 APLRPLSREWVF------PSPKSESGHITRPER---LKYNPHMHRRTFATVAMEAGVLEE 325 Query: 306 ELMATYGWKTVDQA-ETYTK 324 + + + YT+ Sbjct: 326 IVGRLLNHTPLSITGQRYTR 345 >gi|58584989|ref|YP_198562.1| site-specific recombinase XerD [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419305|gb|AAW71320.1| Site-specific recombinase XerD [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 328 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 49/307 (15%), Positives = 101/307 (32%), Gaps = 45/307 (14%) Query: 74 LISEYRKSAHWGSLA-VNSRISFESYFDQIIRKS---GDFDYRKITT---KHIRSGVESR 126 I+ Y + A N+ S+ S Q+ G T +++S + Sbjct: 14 YITYYIDALVSERSATQNTLESYRSDLHQLEDFLLKSGTTLVGASKTNIKDYVKSLCTQK 73 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV----ERPKRKTEGIRPWTKEDM--- 179 K+ SS + +++M+ +K + NP + + PK + + ++M Sbjct: 74 KYKSSSISRKISAMKNFYKCLFNDGIIDSNPAPANDDELKNPKVFRPLPKYLSVKEMLLL 133 Query: 180 ------QQFKSFWSEGSQPRLAFEFLLYS-GLRCSDSCRAGVQHLQN-------NIFSIK 225 + S+ A +LYS G+R S+ + + + + I Sbjct: 134 IDTVRKSANEPNKEINSRRLCAILDILYSSGMRISELISMKLCEVSHLLNSSDKECYIII 193 Query: 226 TQKTGTIITVELPDGFMKLLAMT-----------PIGKETFFINNDKQKMNATQFSIWFK 274 K+ + + ++ L F N + + + K Sbjct: 194 KGKSSKERQILFNEQALQSLRNYLLARDNLISDRKESDWLFPGNKPNKPITRQRIGQLVK 253 Query: 275 AKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI-- 329 A K ++ S H +R AT D+GA+ + G + + YT A++ Sbjct: 254 ELAKKCNIDENKISPHVIRHSFATHLLDSGASIMLIQKILGHTNLSTTQIYTHIANKKLK 313 Query: 330 -RLGIKN 335 +L + Sbjct: 314 DKLANSH 320 >gi|301062332|ref|ZP_07202995.1| site-specific recombinase, phage integrase family [delta proteobacterium NaphS2] gi|300443536|gb|EFK07638.1| site-specific recombinase, phage integrase family [delta proteobacterium NaphS2] Length = 389 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 50/351 (14%), Positives = 99/351 (28%), Gaps = 35/351 (9%) Query: 14 ERTRHGKIIYY---FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 ++ + GK + Y +R G++ + P A + + + T Sbjct: 29 DKAKSGKRLMYWISYRLPSGKQKQEPVGASIDDARAADGKKKILKKEGKLFDIRDDTKMT 88 Query: 71 LKWLISEYRKSAHWGSL-AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--- 126 L S Y +L + ++ ++ G KIT + + R Sbjct: 89 FNELTSWYLGLEKVKALASYHTIKI---SIEKFNAVFGGMIVAKITPADLENYQAKRAKA 145 Query: 127 KHTPSSAIQFLT-----SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 P++ + ++ + E + + K R T ++ Sbjct: 146 GKAPATIDHEIGKTKTMILKAFDNGKISGETLRTFKKIKKTLKKGADVRDRILTHDEFS- 204 Query: 182 FKSFWSEGSQPRLAFE--FLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITV 235 E S + Y+G+R + + + +I K T+ Sbjct: 205 ---RLCENSTQHICGMLTMGYYTGMRRGEILKLTWDKVDMKNRTINLEAADTKDRERRTI 261 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--------AH 287 + D K+L + + K + KAG+ H Sbjct: 262 PIYDELFKMLKNVTRHINDKHVFLFRGKPVSD-IRTGLVKACKKAGITYGRFEKGGFIFH 320 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETY-TKGADRIRLGIKNSR 337 +R T AG +MA G T + + Y T D R ++ Sbjct: 321 DLRHTFNTNMRKAGVPESVIMAITGHSTREMFDRYDTVDLDDTRQALQALE 371 >gi|110635731|ref|YP_675939.1| site-specific tyrosine recombinase XerC [Mesorhizobium sp. BNC1] gi|110286715|gb|ABG64774.1| tyrosine recombinase XerC subunit [Chelativorans sp. BNC1] Length = 313 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 39/285 (13%), Positives = 81/285 (28%), Gaps = 31/285 (10%) Query: 77 EYRKS-AHWGSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSGVESRK 127 E+ S LA + ++E Q ++ G D + +R+ + +R+ Sbjct: 19 EWLSSLKEERRLAPLTLDAYERDTRQFLQFLTRHGGGAPGLCDIAALRPADLRAFLAARR 78 Query: 128 HTPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-- 182 + A L +R ++ ++ ++ P+ +P T D ++ Sbjct: 79 IDGAGARTLGRGLAGVRSFLRFLEKRGLANAAGAGALRAPRAPKGLPKPLTAADAKRVTS 138 Query: 183 -----KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITV 235 ++ F L SGLR ++ + + T K V Sbjct: 139 GEGQLAEEPWIAARNAAVFALLYGSGLRIGEALGLKGVDIAALRSGSLRVTGKGSKTRVV 198 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-------FSIWFKAKATKAGVN--KSA 286 + + +A A + + + + Sbjct: 199 PVLPVVGEAVAEYQRLCPYHLEAEAPLFRGARGGALQPAIIQREMQKMRSALNLPDTATP 258 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 H +R AT G + G ++ + YT D RL Sbjct: 259 HALRHSFATHLLGRGGDLRAIQELLGHASLSTTQVYT-AVDTSRL 302 >gi|293602487|ref|ZP_06684933.1| phage integrase family site-specific recombinase [Achromobacter piechaudii ATCC 43553] gi|292819249|gb|EFF78284.1| phage integrase family site-specific recombinase [Achromobacter piechaudii ATCC 43553] Length = 335 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 43/323 (13%), Positives = 91/323 (28%), Gaps = 43/323 (13%) Query: 51 LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF 109 + ++ + + L + + + + ++ + + + D Sbjct: 1 MDQTSHNAPPPGAAQADTAALPEPMRAWLRHLETNRRYSPHTLDGYRREL-HFLHELADR 59 Query: 110 ---DYRKITTKHIRSGVESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163 KI HIR + P S + L + R ++W +A NP V Sbjct: 60 AKLPLDKIANGHIRQFIARLHAQGRGPRSLARTLAAWRGFYQWWAPAVDLAGNPVAGVRA 119 Query: 164 PKRKTEGIRPWTKEDMQQFKSFW-------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216 PK + + E Q + + FE L SGLR S+ +++ Sbjct: 120 PKAPRGLPKALSVEQTQALLDRPAAKVANEPVALRDQAMFELLYSSGLRLSELVGLDLRY 179 Query: 217 LQNNIFSIKTQ------------KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ-- 262 + + K G +V + + L+ + + Sbjct: 180 TRTADYESAGWLKLDEAEVEVLGKGGKRRSVPVGQAALAALSKWIAARPQLAPPSPAPQD 239 Query: 263 -----------KMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMA 309 +++ + A AG+ H +R A+ + + Sbjct: 240 AAALFLGARGKRISPRVVQLQLAQFAQAAGLPTHVHPHVLRHSFASHVLQSAQDLRAVQE 299 Query: 310 TYGWKTVDQAETYTKGADRIRLG 332 G + + YT+ D L Sbjct: 300 MLGHANISTTQIYTR-LDFQHLA 321 >gi|227504796|ref|ZP_03934845.1| site-specific tyrosine recombinase XerC [Corynebacterium striatum ATCC 6940] gi|227198646|gb|EEI78694.1| site-specific tyrosine recombinase XerC [Corynebacterium striatum ATCC 6940] Length = 299 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 40/296 (13%), Positives = 87/296 (29%), Gaps = 22/296 (7%) Query: 62 NSPRKKPTTLKWLISEYRKS-AHWGSLAVNSRISFESYFDQII---RKSGDFDYRKITTK 117 + L I ++ + + + + S + FD + Sbjct: 3 KRVEEPTGQLAEAIEDFAEHQLLVRGRSAATVKGYRSDLRDLARSVPDFASFDLNALRAW 62 Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 + ++ + ++ + + R WAVR+ ++ + + PK + Sbjct: 63 LGEAV--AQGKSRATLARRTAAARAFSTWAVREGHLQADVAARLVSPKVGKHLPKVLAAT 120 Query: 178 DM-----QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGT 231 + + E L +G+R ++ V L + + T K Sbjct: 121 EAGELVGNAASHDEVHFLRDSAMLELLYATGMRVAELVGLDVGDLDLHRRTALVTGKGNK 180 Query: 232 IITVELPDGFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAG-V 282 V D LA F+ +++ Q + A G Sbjct: 181 QRVVPFGDAASDALATWIEKGRLQLAGDTDAVFVGTRGGRIDQRQVRRVVEKAAQITGAT 240 Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSR 337 + HG+R +AT + GA + G ++ + YT A R++ + Sbjct: 241 GLTPHGLRHTAATHLLEGGADLRVVQELLGHSSLQTTQVYTHVSAKRLKDAYSRAH 296 >gi|218667294|ref|YP_002425983.1| site-specific recombinase, phage integrase family [Acidithiobacillus ferrooxidans ATCC 23270] gi|218519507|gb|ACK80093.1| site-specific recombinase, phage integrase family [Acidithiobacillus ferrooxidans ATCC 23270] Length = 331 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 46/318 (14%), Positives = 94/318 (29%), Gaps = 23/318 (7%) Query: 24 YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83 + R R+ S + A + R L ++ Y K Sbjct: 14 QVQVDGRRLHRILPAGSSARDAKQVEARLRAELTSARPLPERAGDPPLAAVMPLYLKHLE 73 Query: 84 WGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESRKHTPSSAIQFLTSMRV 142 + + + +I + + + + + P++ + L +++ Sbjct: 74 HLR-SPETA---RFHAARITPWLAQYTASEAPKCAAMIIRDMTGAYAPATINRSLGALKK 129 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202 A QE N ++R E T E + + A L++ Sbjct: 130 ALTLAWEQELTPENYGARIKRLPEHNERHIYLTLEQVN--ELASHASDPVAAAIWIALFT 187 Query: 203 GLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKETFFINND 260 G R + + + + +I+ KT TV + L P+ Sbjct: 188 GCRRGEITKLKAEDVGETTITIRAGNTKTLKTRTVPIIGPMRLWLPFIPL---------- 237 Query: 261 KQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 +NA F+ KAG+ H +R A+I +GA + + G + Sbjct: 238 --PINAEGLKSGFRRAREKAGLPHLHFHDLRHSCASILLASGADLYTISRILGHSSTKMT 295 Query: 320 ETYTK-GADRIRLGIKNS 336 E Y D + ++ + Sbjct: 296 ERYAHLQTDAQSIALERA 313 >gi|91214773|ref|ZP_01251746.1| tyrosine type site-specific recombinase [Psychroflexus torquis ATCC 700755] gi|91187200|gb|EAS73570.1| tyrosine type site-specific recombinase [Psychroflexus torquis ATCC 700755] Length = 379 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 31/253 (12%), Positives = 80/253 (31%), Gaps = 16/253 (6%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSM 140 + N+ +++S + + + +T + I + K + S+ + ++ Sbjct: 105 KGFSKNTVDNYKSSLKPFFKYFENQSLKSVTKEQIEGYVFELISKYKISESAQNTIINAI 164 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200 + ++ + N + + + + + + Sbjct: 165 KCYYEHTLGLPREYYNITRPKKSQDLPNILH-----INEVRRIINSPSNLKHKTILHTIY 219 Query: 201 YSGLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN 258 +GLR + R V +++ IK K L ++LL + + Sbjct: 220 GAGLRVGELIRLRVVDIRSEEGYIFIKDSKGKKDRHTVLSKHLLELLREYYKIYKPAYWL 279 Query: 259 NDKQ---KMNATQFSIWFKAKATKA-GVNK-SAHGVRKFSATISADAGATAHELMATYGW 313 + Q + ++T ++ + G + H +R AT + G + + A G Sbjct: 280 FEGQTGGQYSSTSIQSIYRKAVKETNGNPWSTPHTLRHSFATHLMERGTSLRHIQAALGH 339 Query: 314 KTVDQAETYTKGA 326 + E YT+ Sbjct: 340 NSSKTTEIYTRVL 352 >gi|326382897|ref|ZP_08204587.1| site-specific tyrosine recombinase XerC [Gordonia neofelifaecis NRRL B-59395] gi|326198487|gb|EGD55671.1| site-specific tyrosine recombinase XerC [Gordonia neofelifaecis NRRL B-59395] Length = 297 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 33/287 (11%), Positives = 83/287 (28%), Gaps = 26/287 (9%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSG---VESR 126 ++ + + + ++ ++ ++ +G + +R+ R Sbjct: 3 DVLVAFADHLSFEKGHSKHTVRAYTGDIRGLVAFAGARGVEVGDLDLPLLRAWLAEHARR 62 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 ++ + ++S + WAVR+ + +P ++ PK E Sbjct: 63 GAARTTIARQVSSAKTFCAWAVREGVLQTDPAQRLQAPKSHRVLPAVLAPEQAAAAVDGA 122 Query: 187 SEGS---------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236 + S + R+ E L G+R + C + + + I+ +V Sbjct: 123 AGDSAGDGDPVAFRDRVILELLYSCGIRVGELCGLDLGDVDADRRVIRVIGKGDKQRSVP 182 Query: 237 LPDGFMKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVNKSA 286 L + +++ AG + Sbjct: 183 YGGPAAAALDDWLRRGRSALATAASGDALLLGVKGGRLDQRMARTVVHRATETAGQSVGP 242 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 H +R +AT + GA + G ++ + YT + + Sbjct: 243 HALRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVSVERLRAV 289 >gi|255013631|ref|ZP_05285757.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_7] Length = 367 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 51/359 (14%), Positives = 106/359 (29%), Gaps = 37/359 (10%) Query: 5 LRLPPFVTKERTRHGKIIYY---FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61 ++ P + + +G Y +R G L + I Sbjct: 1 MKEPIRLRTKELANGSKSLYLDIYRNGKRTYEYLKMYLIPETDRNARQQNETTMAAANAI 60 Query: 62 NSPRKKPTT--------------LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107 S R T L + Y++ N+ +S D + +G Sbjct: 61 KSKRIIELTSGEAGIMNHKDKVYLLDWMQLYKEEQKKRG-KKNT-GQIKSVTDILKEYAG 118 Query: 108 DF-DYRKITTKHIRSGVESR---------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINP 157 + ++ ++ + S+ + AVR + + NP Sbjct: 119 ERFTLNQVDLTFCHGYIDYMLTSYRPKGKPLSASTRNTYYQIFNGALNAAVRAKRILKNP 178 Query: 158 ---CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214 E+PK T E+++ + + + A+ F + GLR SD Sbjct: 179 FNEMEKSEKPKMPESVRSYMTIEEVRSLIATPMQNEGVKSAYLFSCFCGLRISDIIGLQW 238 Query: 215 QHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273 +++ + + + L P + ++ + + Sbjct: 239 KNVFIDNGQYRLAVAMQKTKEPIYLPLSNEALKWMPERGDKTADDHVFDL--PSGINQLI 296 Query: 274 KAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 K A AG++K + H R AT+ GA + + G +V + Y K ++ + Sbjct: 297 KPWAKAAGISKRFTFHTARHTFATMMLTLGADLYTVSKLLGHTSVKMTQVYAKIVNKKK 355 >gi|151222137|ref|YP_001332959.1| phage integrase [Staphylococcus aureus subsp. aureus str. Newman] gi|295428587|ref|ZP_06821214.1| phage integrase [Staphylococcus aureus subsp. aureus EMRSA16] gi|150374937|dbj|BAF68197.1| phage integrase [Staphylococcus aureus subsp. aureus str. Newman] gi|295127569|gb|EFG57208.1| phage integrase [Staphylococcus aureus subsp. aureus EMRSA16] Length = 353 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 47/337 (13%), Positives = 103/337 (30%), Gaps = 26/337 (7%) Query: 13 KERTR--HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP--RKKP 68 + +TR GK Y K G+R R A + K + S Sbjct: 8 RMKTRCYDGKKWQYEFKHEGKRYRKKGFRTK------REANSAGLDKLNELRSGFNIDNY 61 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVES-- 125 TL+ + K+ + N+ + + I + G + KI + + + Sbjct: 62 ITLEEYFENWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDYS 121 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER----PKRKTEGIRPWTKEDMQQ 181 ++H + + ++R A+ + NP V P + + E Sbjct: 122 KEHAKETIRKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEIL 181 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-------KTGTIIT 234 + ++ LA ++ +G R S + ++H+ +I I Sbjct: 182 KDHVRKKRTRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTNTSPRYISIA 241 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293 M +++ I + + +N + K+ + ++H +R Sbjct: 242 KSDMKHIMDVISTFAISYDGYIFKEGGSIINLHAINNALKSACRVNNIPIITSHALRHTH 301 Query: 294 ATISADAGATAHELMATYGWKTVD-QAETYTKGADRI 329 + G + H + G K + Y+ + Sbjct: 302 CSYLLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEK 338 >gi|62912537|ref|YP_227613.1| putative integrase [Haemophilus phage Aaphi23] gi|273809608|ref|YP_003344846.1| putative integrase [Aggregatibacter phage S1249] gi|31408042|emb|CAD90776.1| putative integrase [Haemophilus phage Aaphi23] gi|261410515|gb|ACX80346.1| putative integrase [Aggregatibacter phage S1249] Length = 348 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 50/318 (15%), Positives = 102/318 (32%), Gaps = 18/318 (5%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 + R Y F +G R+R S A A + + + Sbjct: 9 KKRGEIWHYSFTSPNGERVR-RSARTSDKNQAQQLASKEYNECWRVFKLGERPNYSWQEA 67 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT---KHIRSGVESRKHTPS 131 + ++ + + + GD +I K I+ Sbjct: 68 VVQWLDEKPKRKQD----RNMLYGLVWLDKYLGDKKLNEIDRTLIKFIQYEKAKEGVKAR 123 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 + L +RV+ + AV +++ P + + +R T+ + + E + Sbjct: 124 TINAVLQQIRVILRAAVEWDWLDKCPAI--KFLPEPKRRVRWLTQHEEIRLIEELPEHLK 181 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFMKLLAM 247 P +F + +GLR S+ + + + + + KTG I V L D ++++ Sbjct: 182 P--IVQFAILTGLRMSNITQLKWSQIDLSKRQAWINSEQSKTGNSIGVPLNDKAIEVIVS 239 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHE 306 + + + + F+A +AG+ + H +R AT +G + Sbjct: 240 QFGKHKENVFTYKGKPVRIAN-TKAFRAALQRAGIKDFRFHDLRHTWATRHIMSGTPLYV 298 Query: 307 LMATYGWKTVDQAETYTK 324 L GW D Y Sbjct: 299 LQELGGWSKSDTVRKYAH 316 >gi|126175914|ref|YP_001052063.1| phage integrase family protein [Shewanella baltica OS155] gi|125999119|gb|ABN63194.1| phage integrase family protein [Shewanella baltica OS155] Length = 451 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 50/313 (15%), Positives = 110/313 (35%), Gaps = 15/313 (4%) Query: 27 KGHGRRIRLPYPHESTFIPAYMSALTGSTP--KREYINSPRKKPTTLKWLISEYRKSAHW 84 + R R+ P + + A TG + E + + K + Sbjct: 49 IDNRTRTRILAPVSALTVKAAREKATGQLQAWREENTQPSMSASPRFDVFVEQTWKPMIF 108 Query: 85 GSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTP-SSAIQFLTSMRV 142 +++ S +++ G + I + +++ + T +A + L +++ Sbjct: 109 EHWKPSTKRSVLPALNRRLLAHFGRYPLHMINHRMVQAWFDEISKTRKGAANRNLDTLQS 168 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-----FKSFWSEGSQPRLAFE 197 +FK A+RQ + NPC+ + + ++ R + +MQ+ + GS + A Sbjct: 169 VFKLALRQGHCLTNPCIGIRQ-NKRRVLNRFLSVAEMQRLSVALDECEEVGGSIAQCADI 227 Query: 198 FLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255 L +G R S+ ++++ N + KTG + + K Sbjct: 228 LRLLLLTGCRLSEITFLKGEYVRGNELHLPDSKTGAKVLYIGQAAVD--ILSRYHCKANT 285 Query: 256 FINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWK 314 + KQ + + + + G+ + H +R A+ + G + + + G K Sbjct: 286 ELFPMKQGASTSLVQSLWLRLRKQIGIEDVRLHDLRHTFASYAVMDGCSIPMVASLLGHK 345 Query: 315 TVDQAETYTKGAD 327 V YT D Sbjct: 346 KVTMTLRYTHVGD 358 >gi|221140347|ref|ZP_03564840.1| phage integrase family protein [Staphylococcus aureus subsp. aureus str. JKD6009] gi|258452366|ref|ZP_05700376.1| phage integrase [Staphylococcus aureus A5948] gi|282904663|ref|ZP_06312538.1| integrase [Staphylococcus aureus subsp. aureus C160] gi|282909331|ref|ZP_06317147.1| phage integrase [Staphylococcus aureus subsp. aureus WW2703/97] gi|283958775|ref|ZP_06376221.1| integrase [Staphylococcus aureus subsp. aureus A017934/97] gi|284025051|ref|ZP_06379449.1| phage integrase family protein [Staphylococcus aureus subsp. aureus 132] gi|304379190|ref|ZP_07361933.1| integrase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|257859953|gb|EEV82791.1| phage integrase [Staphylococcus aureus A5948] gi|282326899|gb|EFB57196.1| phage integrase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282594912|gb|EFB99888.1| integrase [Staphylococcus aureus subsp. aureus C160] gi|283789815|gb|EFC28637.1| integrase [Staphylococcus aureus subsp. aureus A017934/97] gi|302333670|gb|ADL23863.1| bacteriophage integrase [Staphylococcus aureus subsp. aureus JKD6159] gi|302751899|gb|ADL66076.1| bacteriophage integrase [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304342236|gb|EFM08132.1| integrase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|320143657|gb|EFW35435.1| site-specific recombinase, phage integrase family [Staphylococcus aureus subsp. aureus MRSA177] Length = 345 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 45/329 (13%), Positives = 99/329 (30%), Gaps = 24/329 (7%) Query: 19 GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP--RKKPTTLKWLIS 76 GK Y K G+R R A + K + S TL+ Sbjct: 8 GKKWQYEFKYEGKRYRKKGFRTK------REANSAGLDKLNELRSGFNIDNYITLEEYFE 61 Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVES--RKHTPSSA 133 + K+ + N+ + + I + G + KI + + + ++H + Sbjct: 62 NWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDYSKEHAKETI 121 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVER----PKRKTEGIRPWTKEDMQQFKSFWSEG 189 + ++R A+ + NP V P + + E + Sbjct: 122 RKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEILKDHVRKKR 181 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-------KTGTIITVELPDGFM 242 ++ LA ++ +G R S + ++H+ +I I M Sbjct: 182 TRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTDTSPRYISIAKSDMKHIM 241 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAG 301 +++ I + + +N + K+ + ++H +R + G Sbjct: 242 DVISTFAISYDGYIFKEAGSIINLHAINNALKSACRVNNIPIITSHALRHTHCSYLLAKG 301 Query: 302 ATAHELMATYGWKTVD-QAETYTKGADRI 329 + H + G K + Y+ + Sbjct: 302 VSIHYISKRLGHKNIAITTSVYSHLLEEK 330 >gi|167770641|ref|ZP_02442694.1| hypothetical protein ANACOL_01987 [Anaerotruncus colihominis DSM 17241] gi|167667236|gb|EDS11366.1| hypothetical protein ANACOL_01987 [Anaerotruncus colihominis DSM 17241] Length = 339 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 48/304 (15%), Positives = 96/304 (31%), Gaps = 45/304 (14%) Query: 85 GSLAVNSRISFESYFDQIIRKS---------------------GDFDYRKITTKHIRSGV 123 + + ++ +R D I++ + Sbjct: 22 KGRSKRTVDAYYIDLRTFLRYIKCVKHYVADPDDIDAFSQVSIADIPLETISSIKLGDVY 81 Query: 124 ESRKHTPS-------SAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWT 175 + + S + + ++S+R F + V+ + INP ++E P K R T Sbjct: 82 QYLNYAASERENNAKTRSRKVSSLRSFFNYLTVKSGLLKINPIENLEVPSVKKSVPRYLT 141 Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233 E+ + + S R L+ G+R S+ +Q ++ + + K Sbjct: 142 LEECLELLTHIESSSYERDFCIATLFLNCGMRLSELVGINLQDIRGDTIRL-LGKGNKER 200 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWFKAKATKAGV-- 282 V + D + L + T + +++ + +AG+ Sbjct: 201 IVYINDACKRALTTYLAVRMTPANVKYRDALFLSSRGTRISPRRVEQIIARCLEQAGLAG 260 Query: 283 -NKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 S H +R +AT+ G L G ++ E YT +DR S +S Sbjct: 261 QGYSPHKLRHTAATLMYQHGGVDIRVLKEILGHASLSTTEIYTHISDRQMEKAAKSSPLS 320 Query: 341 SVVD 344 SV Sbjct: 321 SVAP 324 >gi|148360267|ref|YP_001251474.1| integrase [Legionella pneumophila str. Corby] gi|296106689|ref|YP_003618389.1| phage integrase-like protein [Legionella pneumophila 2300/99 Alcoy] gi|148282040|gb|ABQ56128.1| integrase, phage related [Legionella pneumophila str. Corby] gi|295648590|gb|ADG24437.1| phage integrase-like protein [Legionella pneumophila 2300/99 Alcoy] Length = 393 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 56/371 (15%), Positives = 113/371 (30%), Gaps = 35/371 (9%) Query: 10 FVTKERTRHGKIIYYFR---KGHGRRIRLPYPHESTFIPAYM-------SALTGSTPKRE 59 + G +++R G +++ L + A G P Sbjct: 25 GLGIRVMPSGNKSWFYRFSMNGKRQKMTLGKYPAISLKQAREYLAKAQSLKEQGINPIEN 84 Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLA-VNSRISFESYFDQIIRKSGDFDYRKITTKH 118 K+ T LI + ++ + ++ + II GD K+ TK Sbjct: 85 TKLEKLKEDNTFSKLIQSWYENYAVKNRKQPRPIK-YQIDSE-IIPLLGDTVLDKLQTKD 142 Query: 119 IRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE--------RPKRKT 168 I ++ P A + L++++ + +AV + Y+ NP ++ +P+ + Sbjct: 143 ITIALDKIVQRGAPIHANRILSTIKQVLNYAVSRGYIQYNPATNIRSRDIGGIEKPRERV 202 Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228 RLA + ++ +G+R + A Sbjct: 203 LSPEEIRIIWKFLESDKSQMSESARLAIKVIILTGVRTGEIRLAQWHQFDFEQSLWTIPP 262 Query: 229 TGTI----ITVELPDGFMKLLAMTPIG---KETFFINNDKQKMNATQFSIWFKAKATKAG 281 + + + L + KLL M+ K T+ G Sbjct: 263 EHSKGGITVKIHLSELTKKLLLQFKEQSVSPFVIPGITIDVPMSKDALPRAIKRIQTRVG 322 Query: 282 VN-KSAHGVRKFSATISADA-GATAHELMATYGWKTVDQAETYTKG--ADRIRLGIKNSR 337 V +AH +R+ AT ++ + G K TY K + + + Sbjct: 323 VPEWTAHDLRRTFATQLGESLNIDPVVIEKCLGHKMPRIMATYNKNEMLPQRKEALDAWA 382 Query: 338 -RISSVVDSDD 347 I+ ++ S D Sbjct: 383 SHIAKLISSKD 393 >gi|37679961|ref|NP_934570.1| integrase [Vibrio vulnificus YJ016] gi|37198707|dbj|BAC94541.1| integrase [Vibrio vulnificus YJ016] Length = 402 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 46/358 (12%), Positives = 99/358 (27%), Gaps = 45/358 (12%) Query: 20 KIIYYFRKGHGRR-IRLPYPHESTFIPAYMSALTGSTP----------KREYINSPRKKP 68 K Y+R +R L + T A A + + E ++ Sbjct: 41 KYYLYYRIHGKQRNFLLGSANALTPAQARDLAKEKAGQVAAGEDVQDTRHEAKKREQRNS 100 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-- 126 TL + E+ + A ++ S + +IT I+ V R Sbjct: 101 LTLSKFLEEHYSAYLMSINAKTAQKSLMCIQSNF-KHLSTKPLVEITAWDIQQWVAERSK 159 Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 P++ +R +F AV ++ + +V+ P+ + IR + + Sbjct: 160 AGRAPATISYAYNRLRAVFNRAVEWGFIDSHSLDNVKIPRIDNKRIRYLSVSEEAALLES 219 Query: 186 WSEGSQ--------------PRLAFEFL-----------LYSGLRCSDSCRAGVQHLQNN 220 RL + L +G+R + H+ Sbjct: 220 LKARDARLKDEALQRYGKRAQRLVSQRYVDFLEPLIVLALNTGMRKGEILSLKWSHINME 279 Query: 221 IFSIKTQKTG----TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK 276 + + T+ L + +L + ++ + +++ Sbjct: 280 DRYLTIRSENAKSKNKRTIPLNNTVYTMLQAWHEQNPDTELVFERNGKPLDSYQYQWESL 339 Query: 277 ATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 +AG+ H +R A+ A + + G + Y A + Sbjct: 340 LKEAGIENFRFHDLRHHFASKLVMKEADLNVVRELLGHADLKMTLRYAHLAPEHKASA 397 >gi|254701722|ref|ZP_05163550.1| Phage integrase [Brucella suis bv. 5 str. 513] gi|261752275|ref|ZP_05995984.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513] gi|261742028|gb|EEY29954.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513] Length = 341 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 57/333 (17%), Positives = 112/333 (33%), Gaps = 25/333 (7%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 + G+ YY G +R P + F+ + A + + + Sbjct: 11 KVNAKGRTYYYA-WRGGPALR-GEPGSAEFMASLQEA---------NDSRVIPDASKFRA 59 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVESRKH 128 +I+ Y+ S + LA +++ ++ + D+I +K GD + IR Sbjct: 60 VITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSIAQFDLPQKIRPVIRKWRGEFAD 119 Query: 129 TPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 P +A + + + +AV ++ NPC +++ + T +D+ + K+ Sbjct: 120 KPRTADYGMQVLSRVLSYAVDPLGKISQNPCEGIKQLYKNDRAAIIRTDQDIARLKTKC- 178 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLL 245 + A + ++GLR D R H+ +N + + + L LL Sbjct: 179 -SPEVAWAVDLAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRHTKEAVIPLYAELRALL 237 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGA 302 P N K F F +A + + H R +AT AG Sbjct: 238 QTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLHFHDFRGTAATKFYIAGL 297 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 + + GW+ + R I+ Sbjct: 298 SERVIAEIMGWEEETVRNIIRRYVSR-TAAIEA 329 >gi|254438003|ref|ZP_05051497.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 307] gi|198253449|gb|EDY77763.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 307] Length = 368 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 44/320 (13%), Positives = 103/320 (32%), Gaps = 16/320 (5%) Query: 9 PFVTKERTRHGKIIYYFRKGHG--RRIRLPYPHESTFIPAYMSALT-GSTPKREYINSPR 65 + + K Y+ + G +RI + + A +AL R + + Sbjct: 38 KGLVLFVGKRSKTWYFQKDVGGQTKRILIGRFPIISAQAARQTALGFALEMGRGAGKAAQ 97 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 TL+ + Y + +++ + ++ +I+ Sbjct: 98 IGAPTLEAAMEVYLARPKLR--SETNKVGMRAQLTLHLKDWMRLPLDEISKSMAVRRHHD 155 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 +PS+A L S R ++ A R + P +++E + K +G R + Sbjct: 156 MAGSPSAANHVLRSFRAIYNHARRTCDLPECPTMAIEWFEDKPDG-RIIENLKHWRKTID 214 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 R+ +E LL++GLR ++ + + + + K G + + ++L Sbjct: 215 DLPNPIHRVFYELLLFTGLRKTEVFTLKWEQILEDRIHLPMTKNGRSFDLPISQLHHEIL 274 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAH 305 A + + + + + H R+ AT++ +AG Sbjct: 275 APLRPLSSDWVF------PSPKSETGHITRPVR---LKYNPHMHRRTFATVAMEAGVLEE 325 Query: 306 ELMATYGWKTVDQA-ETYTK 324 + + + Y + Sbjct: 326 IVGRLLNHTPLSITGQRYVR 345 >gi|325286409|ref|YP_004262199.1| integrase family protein [Cellulophaga lytica DSM 7489] gi|324321863|gb|ADY29328.1| integrase family protein [Cellulophaga lytica DSM 7489] Length = 297 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 39/250 (15%), Positives = 85/250 (34%), Gaps = 10/250 (4%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT-PSSAIQFLTSMRVL 143 + + N+ ++ F Q + +++T HI + SA S+ + Sbjct: 34 KNYSKNTTKTYMHMFKQFLTYMYPMPLHQVSTAHIMYYHKELVTKQNVSASYQNQSINAI 93 Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203 K+ + + RP++ + + + +++ + + + + + + G Sbjct: 94 -KFYIEKVLNLPKVQYDFCRPRKAKKLPKVLSLQEVADIITVTN-NIKHKTILKMIYGCG 151 Query: 204 LRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN-- 259 LR S+ V+ + N ++ K L + L I + Sbjct: 152 LRISECVNLKVEDIDSNNMRVWVRNAKGNKDRITLLSPTMLAQLRAYYIVYKPKKWLFEG 211 Query: 260 -DKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTV 316 D ++ +A+ F KA V+ + H +R AT DAG + G + Sbjct: 212 ADGKQYSASSIRQVFNRSKKKARVHMPATVHTLRHSFATHLLDAGTNLRYIQKLLGHNSS 271 Query: 317 DQAETYTKGA 326 E YT + Sbjct: 272 KTTEIYTHVS 281 >gi|15827839|ref|NP_302102.1| site-specific tyrosine recombinase XerC [Mycobacterium leprae TN] gi|221230316|ref|YP_002503732.1| site-specific tyrosine recombinase XerC [Mycobacterium leprae Br4923] gi|18202762|sp|Q9CBU0|XERC_MYCLE RecName: Full=Tyrosine recombinase xerC gi|13093391|emb|CAC30551.1| integrase/recombinase [Mycobacterium leprae] gi|219933423|emb|CAR71695.1| integrase/recombinase [Mycobacterium leprae Br4923] Length = 297 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 38/293 (12%), Positives = 96/293 (32%), Gaps = 28/293 (9%) Query: 73 WLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHT 129 ++ E+ + + ++R ++ ++ +++ +RS + + Sbjct: 2 AILDEFDEHLALRCGRSEHTRRAYLGDLRSLLTHLEGRGSRLDQLSLPVLRSWLATAAGA 61 Query: 130 PSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 ++ + +++++ WA + +A +P ++ P+ ++ Q + Sbjct: 62 GAARTTLARRISAVKAFTAWAKWRGQLAADPAARLQVPRAYRTLPAVLRQDQALQIMAAA 121 Query: 187 SEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL 237 G + RL E L +G+R S+ C + + ++ K T Sbjct: 122 KSGAEQGDPLALRDRLIVEMLYATGIRVSELCGLDIDDVDTRHRLVRVLGKGNKQRTAPF 181 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQK-----------MNATQFSIWFKAKATKAG-VNKS 285 L + + ++ + A AG + Sbjct: 182 GVPAADALRGWLDDGRPALVTVESGPALLLGSRGRRLDVRQARTVVHQTVAVVAGAPDMG 241 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337 HG+R +AT + GA + G ++ + YT A R+R+ + Sbjct: 242 PHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSRLRVVHDQAH 294 >gi|254718076|ref|ZP_05179887.1| site-specific tyrosine recombinase XerD [Brucella sp. 83/13] gi|306837278|ref|ZP_07470164.1| tyrosine recombinase XerD [Brucella sp. NF 2653] gi|306407650|gb|EFM63843.1| tyrosine recombinase XerD [Brucella sp. NF 2653] Length = 307 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 39/289 (13%), Positives = 86/289 (29%), Gaps = 33/289 (11%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR---K 127 I + + A N+ S+ + + + + T HIR +++ Sbjct: 6 AIENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKGVNLAEAETGHIRMTLDTMAAQG 65 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185 P+S + L+++R F++ + + +P ++ PK++ + + E++ + Sbjct: 66 FAPTSQARRLSALRQFFRFLYSEGFRQDDPTGILDAPKKQKPLPKIMSVENVGKLLDRAA 125 Query: 186 -----------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTII 233 + + E L +GLR S+ V + + + K Sbjct: 126 LEANEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKGSKDR 185 Query: 234 TVELPDGFMKLLAMTP------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---- 283 V L + L G + + F + Sbjct: 186 MVPLSRKAREALQKFLTLRDSLPGSDDNPWLFPAFSESGHLARQVFARELKGLAARAGLA 245 Query: 284 ---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 S H +R A+ GA + G + + YT + Sbjct: 246 ASSVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEER 294 >gi|126665716|ref|ZP_01736697.1| hypothetical protein MELB17_04087 [Marinobacter sp. ELB17] gi|126629650|gb|EBA00267.1| hypothetical protein MELB17_04087 [Marinobacter sp. ELB17] Length = 361 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 48/338 (14%), Positives = 102/338 (30%), Gaps = 29/338 (8%) Query: 13 KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT-TL 71 K + G Y + R + + T + + TL Sbjct: 6 KRAGKDGSTSYRAKVRLKGRNTESATFDRLTDAKRWAIQTEAAIREGRYFQSAAGKGKTL 65 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP- 130 I Y + +L + R + + G + I+ I + K TP Sbjct: 66 ADAIDRYARD-TLPALKDSDRR--LAQLQWWRFQIGAVPIKDISASMIAKYRDELKSTPF 122 Query: 131 -----------SSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKED 178 +S ++L ++ + A + ++A NPC V+R K R ++ Sbjct: 123 KTGKTEKQRTDASTNRYLAALSPVMAAAADEWEWIADNPCRKVKRGKEAKGRTRFLFDDE 182 Query: 179 MQQFKSFWSEGSQ---PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TII 233 ++ + ++ ++ + +G R S+ + + S+ T Sbjct: 183 RKRLLEACDKATETPELKIIVLLGITTGARRSELSGLTWRDVDFKRQSVTFHDTKNGETR 242 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------FSIWFKAKATKAGV-NKSA 286 L + + + ++ F + +A V + Sbjct: 243 AAPLVGPALHAMTEWAKVRPLNDSSHVFSGRTEKTKNKPLDFQRAWMTALKRAEVKDFRF 302 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R +A+ A GA E+ G KT+ + Y+ Sbjct: 303 HDLRHTAASYLAMNGAGLREIAEILGHKTLAMVQRYSH 340 >gi|87200080|ref|YP_497337.1| phage integrase [Novosphingobium aromaticivorans DSM 12444] gi|87135761|gb|ABD26503.1| phage integrase [Novosphingobium aromaticivorans DSM 12444] Length = 297 Score = 113 bits (282), Expect = 4e-23, Method: Composition-based stats. Identities = 40/281 (14%), Positives = 84/281 (29%), Gaps = 24/281 (8%) Query: 69 TTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-GDFD---YRKITTKHIRSGV 123 T ++ + + ++ ++ + + +R G+ D +I +R+ + Sbjct: 1 MTTAEILEAWNAHLALGRRRSPHTVRAYAATAARFLRGLPGEQDWSSLARIDAATLRAHL 60 Query: 124 ESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 R+ SA + L++++ +A Q + P+ K RP T ++ Sbjct: 61 ADRRADGLGNVSAARELSALKTFIAFAREQAGHEDASRPRLRGPRVKRGLPRPITPDEAV 120 Query: 181 Q-------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233 + ++ R L +G+R +++ L T K G Sbjct: 121 NLAETVADDAAVPWIAARDRAVLLLLYGAGMRIAEALALPASALPLGEAVTITGKGGRQR 180 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-------FSIWFKAKATKAGVNKS- 285 V L + + A G+ + Sbjct: 181 VVPLLPIVRAGVDDYVRQCPWPLEKDKPLFRGAKGGPLAQGMVQRAVARARIALGLPATA 240 Query: 286 -AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 H +R AT AGA L G ++ + YT+ Sbjct: 241 TPHALRHSFATHLLGAGADLRSLQELLGHASLSSTQIYTRV 281 >gi|78484754|ref|YP_390679.1| Phage integrase [Thiomicrospira crunogena XCL-2] gi|78363040|gb|ABB41005.1| tyrosine recombinase XerC subunit [Thiomicrospira crunogena XCL-2] Length = 317 Score = 113 bits (282), Expect = 4e-23, Method: Composition-based stats. Identities = 36/300 (12%), Positives = 86/300 (28%), Gaps = 44/300 (14%) Query: 76 SEYRKSAHWGSLAVNSRISFESYF---------DQIIRKSGDFDYRKITTKHIRSGVESR 126 + K + + ++ +++ D + + + + + Sbjct: 5 QRFIKQLKLENKSEHTISNYQRDLMGLLVFYLGDYLEQPLDEKALKSDQAWAFLDQFDDW 64 Query: 127 ------------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168 S + L+++R + + + Q NP ++ PK+ Sbjct: 65 QAIKLPVLQAFIAFRMQQGIAARSIARQLSAIRAFYAFLIEQGRANHNPAKGLKAPKQPK 124 Query: 169 EGIRPWTKEDMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN---NIF 222 + + +Q + + + FE L GLR S+ + + + + Sbjct: 125 ALPKSLDVDLTRQLLEQPLKTWQDVRDQAIFEILYSGGLRVSELVELDLSPGLDGLASGW 184 Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFK 274 K + K L + + F+N +++ Sbjct: 185 VRVLGKGQKERDAPVGQPAQKALHRWLEIRSDYAQPGEQAVFVNRFGKRLGVRSIQTQLD 244 Query: 275 AKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 + +AG+ S H +R AT ++ + G + + YTK D L Sbjct: 245 KRTLQAGLPTKMSPHRLRHACATHVLESSGDLRAVQEMLGHANLSTTQIYTK-LDLQHLA 303 >gi|291457638|ref|ZP_06597028.1| phage integrase [Bifidobacterium breve DSM 20213] gi|291380691|gb|EFE88209.1| phage integrase [Bifidobacterium breve DSM 20213] Length = 376 Score = 113 bits (282), Expect = 4e-23, Method: Composition-based stats. Identities = 46/342 (13%), Positives = 102/342 (29%), Gaps = 38/342 (11%) Query: 11 VTKERTRHGKII-YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 + + T+ GK +RK G A+ +A + P+ Sbjct: 5 IRQYATKSGKRYEVRYRKPDGTPTGKRGFRRKMDADAWGAANVTTAKSVGAYIDPQAGRR 64 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128 ++ L + + + + + E + + K G + + IT ++ V + Sbjct: 65 LVEDLWEPWLAAKKTKA-KPSYIETLERAWRVHVAPKWGMREVQSITHDEVQMWVSALAE 123 Query: 129 TPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + SA L + +R L A + + NPC +E P+++ + + + Q + Sbjct: 124 S-KSASVVLRAEGILRALLAKAKADKCIHDNPCDGLELPRKRRKKHVYLS---IDQLLAL 179 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------- 235 R L GLR + V + + I +++ T + Sbjct: 180 ADASDWRRPIVLTLGLCGLRWGELVGLQVGDVDLDRQRIHVRRSATEVNHQIVVDAPKTG 239 Query: 236 ------------------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277 LL + ++ + ++ Sbjct: 240 EERTVIFPRMLQSCLEEACDGRRQSDLLFPDRRTGSYLRKTHGPCSTSSWFYWAKKRSLG 299 Query: 278 TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 + + + H +R A++ AGA + G K+ Sbjct: 300 DEIADSMTIHDLRHTCASLLVHAGANVKAVQRQLGHKSATMT 341 >gi|310819252|ref|YP_003951610.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1] gi|309392324|gb|ADO69783.1| Phage integrase family protein [Stigmatella aurantiaca DW4/3-1] Length = 395 Score = 113 bits (282), Expect = 4e-23, Method: Composition-based stats. Identities = 53/395 (13%), Positives = 105/395 (26%), Gaps = 64/395 (16%) Query: 10 FVTKERTRHGKII--YY----FRKGHGRRIRLPYP---HESTFIPAYMSALTGSTPKREY 60 + + +T+ GK+ ++ ++ GR R+ + Y + + + Sbjct: 4 RLRQWKTQEGKVQEAWWVDVKYQHPSGRVERIRKASPINTRRGAEEYERQIRHALLTGTF 63 Query: 61 INSPRKKPT-TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKH 118 TL + + + + +S ++ D +I G+ I Sbjct: 64 GKENGAGRVLTLGEFVPRFLTYSENNN-KHSSVVTKRQILDDHLIPAFGNMPLDAIGPAE 122 Query: 119 IRSGVESRKHTPS-----------------------------SAIQFLTSMRVLFKWAVR 149 I + + PS S LT + L A Sbjct: 123 IEDFKAAMRKKPSGARARKEAPTRAALLKRKGSGAVKLLSLKSINNVLTVLHKLLALAQE 182 Query: 150 QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209 Q + P KT+ + + + + R L +GLR + Sbjct: 183 QGVLQHVP----RVKLFKTDKPAFDFLSFEEAERMSNAAEPEWRTLILVALKTGLRLGEL 238 Query: 210 CRAGVQHLQ-----------NNIFSIKTQKTGTIITVELPDGFMKLLAMTPI-GKETFFI 257 L + K G TV+LP ++ L F Sbjct: 239 IGLQWADLDLQRGKLNVRRTIWRGVVGLPKGGRERTVDLPTSAVEALKAHRHLCGPYVFC 298 Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNK-----SAHGVRKFSATISADAGATAHELMATYG 312 D + + A +AGV++ H +R + A G + G Sbjct: 299 QTDGRPLTAGMTKHPLLRALRRAGVSRPEGSIGWHDLRHTYGSHLAMRGVALKVIQELMG 358 Query: 313 WKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347 T++ Y + R + + + Sbjct: 359 HATIEMTMRYAHLSPEAR--ESAVQELDRPIPQPR 391 >gi|198283395|ref|YP_002219716.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|198247916|gb|ACH83509.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC 53993] Length = 331 Score = 113 bits (282), Expect = 4e-23, Method: Composition-based stats. Identities = 46/318 (14%), Positives = 94/318 (29%), Gaps = 23/318 (7%) Query: 24 YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83 + R R+ S + A + R L ++ Y K Sbjct: 14 QVQVDGRRLHRILPAGSSARDAKQVEARLRAELTSASPLPERAGDPPLAAVMPLYLKHLE 73 Query: 84 WGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESRKHTPSSAIQFLTSMRV 142 + + + +I + + + + + P++ + L +++ Sbjct: 74 HLR-SPETA---RFHAARITPWLAQYTASEAPKCAAMIIRDMTGAYAPATINRSLGALKK 129 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202 A QE N ++R E T E + + A L++ Sbjct: 130 ALTLAWEQELTPENYGARIKRLPEHNERHIYLTLEQVN--ELASHASDPVAAAIWIALFT 187 Query: 203 GLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKETFFINND 260 G R + + + + +I+ KT TV + L P+ Sbjct: 188 GCRRGEITKLKAEDVGETTITIRAGNTKTLKTRTVPIIGPMRLWLPFIPL---------- 237 Query: 261 KQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 +NA F+ KAG+ H +R A+I +GA + + G + Sbjct: 238 --PINAEGLKSGFRRAREKAGLPHLHFHDLRHSCASILLASGADLYTISRILGHSSTKMT 295 Query: 320 ETYTK-GADRIRLGIKNS 336 E Y D + ++ + Sbjct: 296 ERYAHLQTDAQSIALERA 313 >gi|313157227|gb|EFR56657.1| site-specific recombinase, phage integrase family [Alistipes sp. HGB5] Length = 402 Score = 113 bits (282), Expect = 4e-23, Method: Composition-based stats. Identities = 52/373 (13%), Positives = 113/373 (30%), Gaps = 36/373 (9%) Query: 4 SLRLPPFVTKERTRHGKIIYYFR-KGHGRRIR-------LPYPHE------STFIPAYMS 49 ++ P + + +G Y G+R +P T + A + Sbjct: 30 KVKEPIRLRMKSLSNGSKSLYLDIYRDGKRTYEYLKMYIIPETDSNSRRQNQTTMDAANA 89 Query: 50 ALTGSTPKREYINSP---RKKPTTLKWLISEYRKSAHWGSLAVNSR--------ISFESY 98 + + + RK T L + Y ++ S+ + Sbjct: 90 IKSKRIIELTSNEAGIVFRKDKTFLLDWMQVYMEAQESAGKKDGSQIKIAMRILKDYAGE 149 Query: 99 FDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158 + + GDF IT + + + + + ++ AVR++ + NP Sbjct: 150 MVTLDQIDGDFCRGYITYLLTEYHPKGKDISNYTLHNYYRALNGALNSAVRKKKMKANPF 209 Query: 159 ------LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212 + +P+ + + + E + A+ F + GLR SD + Sbjct: 210 NELEKSEKIRKPESMRSYMTIEEVQALIDTPMPHEEYEIVKCAYLFSCFCGLRISDIIKL 269 Query: 213 GVQHLQNNIFSIKTQKTGTIITVELPDG-FMKLLAMTPIGKETFFINNDKQKMNATQFSI 271 + + + + + + L P +N +A + Sbjct: 270 KWNDVFVDRGQYRLAVSMKKTKEPIYLPLSPEALKWMPERGGKSSEDNVFDLPSANTIRM 329 Query: 272 WFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 K A AG++K H R AT+ GA + + G V + Y K ++ Sbjct: 330 QLKPWAKAAGISKRFSYHTSRHTFATMMLTLGADLYTVSKLLGHADVKMTQVYAKIINKK 389 Query: 330 RLGIKNSRRISSV 342 + + ++ + Sbjct: 390 K--DEAVNLVNGL 400 >gi|188583991|ref|YP_001927436.1| tyrosine recombinase XerC [Methylobacterium populi BJ001] gi|179347489|gb|ACB82901.1| tyrosine recombinase XerC [Methylobacterium populi BJ001] Length = 367 Score = 113 bits (282), Expect = 4e-23, Method: Composition-based stats. Identities = 44/330 (13%), Positives = 94/330 (28%), Gaps = 39/330 (11%) Query: 50 ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK---- 105 A+ + R + + A +A N+ ++E Q + Sbjct: 9 AVDAEALLPPGDAALRAAMLGWREAL------ARERRMAANTVEAYERDLRQFLAYRAAR 62 Query: 106 SGDFDYR---KITTKHIRSGVESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159 G + + +R+ + +R+ S ++ L +R ++ R+ + ++ Sbjct: 63 FGTPTIAGLIALKPRDLRAFMAARRAEGIGGRSLMRMLAGLRSFARFLEREGHGSVAALG 122 Query: 160 SVERPKRKTEGIRPWTKE---------DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210 +V PK + RP ++ L SGLR S++ Sbjct: 123 AVRSPKVERRLPRPLPVPAALAMTAPGTRPDDSREPWVLARDAAVIALLYGSGLRISEAL 182 Query: 211 R--AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK------- 261 A + T K G + V + + +A Sbjct: 183 GLAARDAPVPGIDEVRVTGKGGKVRAVPVLPAVAEAVAAYLSLCPHPLDPEGPLFVGVKG 242 Query: 262 QKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 ++ A G+ + H +R AT + G ++ Sbjct: 243 GPLSPRVVQYAVAALRGALGLPESATPHALRHSFATHLLARQGELRAIQELLGHASLSTT 302 Query: 320 ETYTKGADRIRL--GIKNSRRISSVVDSDD 347 + YTK D RL +++ + + Sbjct: 303 QIYTK-VDAARLMSAFEDAHPRARRLPEPR 331 >gi|315445045|ref|YP_004077924.1| tyrosine recombinase XerC subunit [Mycobacterium sp. Spyr1] gi|315263348|gb|ADU00090.1| tyrosine recombinase XerC subunit [Mycobacterium sp. Spyr1] Length = 300 Score = 113 bits (282), Expect = 4e-23, Method: Composition-based stats. Identities = 46/308 (14%), Positives = 94/308 (30%), Gaps = 39/308 (12%) Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSG-- 122 T+ Y + + ++R ++ + + +T +RS Sbjct: 2 DTVLEEFDRYLELE--RGRSEHTRRAYLGDLRSLFAFLDERSPGTGLGGLTLPMLRSWLA 59 Query: 123 -VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + S+ + +S++ WAVR+ + +P ++ PK + ++ + Sbjct: 60 AHAAADTARSTLARRTSSVKTFTAWAVRRGLIGDDPASRLQVPKARRTLPSVLRQDQARD 119 Query: 182 FKSFWSEGS--------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTI 232 G+ + RL E L +G+R S+ C V + + ++ K Sbjct: 120 ALEAAESGAQQGDPLAVRDRLVVEMLYATGIRVSELCGLDVDDVDTSRRLLRVLGKGNKQ 179 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAG- 281 TV + L D + Q + G Sbjct: 180 RTVPYGEPAHAALTAWLHEGRPALATADSGPALLLGARGKRLDPRQARTVVHQTVSAVGG 239 Query: 282 -VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 + HG+R +AT + GA + G ++ + YT R+ Sbjct: 240 APDIGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVT---------VARLR 290 Query: 341 SVVDSDDP 348 +V D P Sbjct: 291 AVHDQAHP 298 >gi|317128823|ref|YP_004095105.1| integrase family protein [Bacillus cellulosilyticus DSM 2522] gi|315473771|gb|ADU30374.1| integrase family protein [Bacillus cellulosilyticus DSM 2522] Length = 280 Score = 113 bits (282), Expect = 4e-23, Method: Composition-based stats. Identities = 51/264 (19%), Positives = 94/264 (35%), Gaps = 12/264 (4%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG--VESRKH 128 L L Y + + + + S+ +IR GD + +T H+++ E ++ Sbjct: 3 LSELWLHYEQDKTLENYSKKTLKSYRLELGLLIRFLGDMEAEDVTIFHLKNYLIEEQKRL 62 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 PSS +R F+WA + ++ NP + V+ PK +P +E ++ + + Sbjct: 63 KPSSFQHRCKFIRSFFRWAHEYDLLSKNPAIKVKMPKDHYRIPKPVNEETLELLRIAS-K 121 Query: 189 GSQPRLAFEFLLYSGLRCSDSCR-AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247 L EF+ +G+R + N K V + Sbjct: 122 SPLEGLLVEFMYSAGVRVGEVYNLNKKDFNFTNRSVYVFGKGDKEREVYFSKRAEIWIQR 181 Query: 248 TPI------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISAD 299 N ++M+ Q FK A KA V+++ H +R A+ + Sbjct: 182 YFDSRQDEEECFICSKNKPYRRMSIDQIRWHFKKLARKAEVDENVYPHRLRHSYASHLIN 241 Query: 300 AGATAHELMATYGWKTVDQAETYT 323 GA+ + G K + YT Sbjct: 242 RGASLEMVRDMLGHKRTETTRVYT 265 >gi|224371854|ref|YP_002606020.1| Phage integrase family protein [Desulfobacterium autotrophicum HRM2] gi|223694573|gb|ACN17856.1| Phage integrase family protein [Desulfobacterium autotrophicum HRM2] Length = 360 Score = 113 bits (282), Expect = 4e-23, Method: Composition-based stats. Identities = 47/338 (13%), Positives = 99/338 (29%), Gaps = 31/338 (9%) Query: 16 TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75 R + + F G+R + P +T A KK T + Sbjct: 6 KRRDRYVLDFYDLEGKRKWITMPKGTTLKAAKEELRKVEDDLATGNYISPKKTPTFDQVA 65 Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SS 132 E+ ++ ++ +E + + + +IT + + + R+ S+ Sbjct: 66 QEWLDHKKM-NIRASTWAVYEGHTKNHFPEFKNLKIHQITIQRVEKFITDRQAAGMNLST 124 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK------TEGIRPWTKEDMQQFKSFW 186 + L S+R +F AV++ Y NP + PK + + I+ T + + F Sbjct: 125 LRKILVSLRQIFNLAVKRGYCPRNPLDYADMPKSQGEETDGADKIQILTHDQITAFLEVV 184 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVELPDG----- 240 +E + + F ++SG R + + + + + Sbjct: 185 TE-QKYHVLFSLAIFSGARQGELLGLKWSDILWGDSQIHIQRSFNNQRFYDTKTKGSNRK 243 Query: 241 ------------FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAH 287 +L F + + +F A + + H Sbjct: 244 IDIGPVMLKKLKKWRLACPPGGLDLVFPTAKGNPMNHNNMVNRYFLPGLKAAKLERIRFH 303 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 +R A++ D G + A G Y Sbjct: 304 DMRHTYASLLIDQGENIKYIQAQLGHSNPTVTLNVYAH 341 >gi|145224715|ref|YP_001135393.1| site-specific tyrosine recombinase XerC [Mycobacterium gilvum PYR-GCK] gi|189030078|sp|A4TEB1|XERC_MYCGI RecName: Full=Tyrosine recombinase xerC gi|145217201|gb|ABP46605.1| tyrosine recombinase XerC subunit [Mycobacterium gilvum PYR-GCK] Length = 300 Score = 113 bits (282), Expect = 4e-23, Method: Composition-based stats. Identities = 46/308 (14%), Positives = 94/308 (30%), Gaps = 39/308 (12%) Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSG-- 122 T+ Y + + ++R ++ + + +T +RS Sbjct: 2 DTVLEEFDRYLELE--RGRSEHTRRAYLGDLRSLFAFLDERSPGTGLGGLTLPMLRSWLA 59 Query: 123 -VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + S+ + +S++ WAVR+ + +P ++ PK + ++ + Sbjct: 60 AHAAAGTARSTLARRTSSVKTFTAWAVRRGLIGDDPASRLQVPKARRTLPSVLRQDQARD 119 Query: 182 FKSFWSEGS--------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTI 232 G+ + RL E L +G+R S+ C V + + ++ K Sbjct: 120 ALEAAESGAQQGDPLAVRDRLVVEMLYATGIRVSELCGLDVDDVDTSRRLLRVLGKGNKQ 179 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAG- 281 TV + L D + Q + G Sbjct: 180 RTVPYGEPAHAALTAWLHEGRPALATADSGPALLLGARGKRLDPRQARTVVHQTVSAVGG 239 Query: 282 -VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 + HG+R +AT + GA + G ++ + YT R+ Sbjct: 240 APDIGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVT---------VARLR 290 Query: 341 SVVDSDDP 348 +V D P Sbjct: 291 AVHDQAHP 298 >gi|300692939|ref|YP_003753934.1| site-specific tyrosine recombinase [Ralstonia solanacearum PSI07] gi|299079999|emb|CBJ52674.1| site-specific tyrosine recombinase [Ralstonia solanacearum PSI07] Length = 329 Score = 113 bits (282), Expect = 4e-23, Method: Composition-based stats. Identities = 49/298 (16%), Positives = 93/298 (31%), Gaps = 41/298 (13%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGVESRKH- 128 I+ Y + + L+ ++ S+ + + + D ++ HIR + Sbjct: 20 IAAYLDTLKFERQLSQHTLASYARELAVLQQLGAQFAAGIDLMQLQPHHIRRMMAQLHGG 79 Query: 129 --TPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + S + L++ R ++W R V NP V PK + + + E Sbjct: 80 GLSGRSIARALSAWRGWYRWLALRDAAVTANPVDGVRAPKSPKKLPKALSVEQAVALMEQ 139 Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS------------IKTQKT 229 E + R E GLR S+ ++H++ + + K Sbjct: 140 LPGDDPETVRDRAVNELFYSCGLRLSELVGLDLRHVRAGDYESASWLDLDTREVMVLGKG 199 Query: 230 GTIITVELPDGFMKLLAMT-------------PIGKETFFINNDKQKMNATQFSIWFKAK 276 TV + + L P F++ +++ Q + K Sbjct: 200 SKRRTVPVGRKAAEALVAWLAARPQLARPDAAPEDAHALFLSARGKRLAQRQIQMRMKRN 259 Query: 277 ATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 A AGV H +R AT + + G ++ + YT D L Sbjct: 260 AIAAGVPADVHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYT-SLDFQHLA 316 >gi|296503148|ref|YP_003664848.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis BMB171] gi|296324200|gb|ADH07128.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis BMB171] Length = 369 Score = 113 bits (282), Expect = 4e-23, Method: Composition-based stats. Identities = 48/366 (13%), Positives = 117/366 (31%), Gaps = 44/366 (12%) Query: 17 RHGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + G G+R + + T A + + + TL Sbjct: 7 KRGNKYCIVIDIGPDPETGKRRQKWFSGYKTKKEA-QADVAKKITELNEGTFIEPSKVTL 65 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 K ++ + + S+ ++ ++++ + +I G K+ HI+ ++ Sbjct: 66 KDYLNHWLE-IKSMSIEKSTFAGYKAFINQHVIPSIGMVALHKLNVIHIQKCYKTAIDKG 124 Query: 131 SSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + L ++ AV+Q ++ NP E PK++ I+ WT+E++++F + Sbjct: 125 IANNSILLMHRILKSALNLAVKQNIISRNPTDFAEIPKKEKTPIQTWTEEEVKKFLAHSQ 184 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--------------TGTII 233 E S+ + + + +G+R + Q + ++ + + Sbjct: 185 E-SRYHIGYLLAITTGMRLGEVLGLRWQDIDFEKHTVTINQTSGHDNKIKKTAKTNSSKR 243 Query: 234 TVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKAKATK 279 T+ +P + L + ++ N + + F F K Sbjct: 244 TIPVPIETIAALKRHKILINKEKLRFGSAYLDQDLINCNEFGRIIKRAHFRKSFIRMTHK 303 Query: 280 AGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSR 337 G+ H +R AT+ G + G + Y+ + + + Sbjct: 304 VGIKEIKFHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLSVYSHVLPN--MQEEAVK 361 Query: 338 RISSVV 343 + Sbjct: 362 NFGKSI 367 >gi|163735189|ref|ZP_02142625.1| tyrosine recombinase XerD [Roseobacter litoralis Och 149] gi|161391647|gb|EDQ15980.1| tyrosine recombinase XerD [Roseobacter litoralis Och 149] Length = 323 Score = 113 bits (282), Expect = 4e-23, Method: Composition-based stats. Identities = 43/308 (13%), Positives = 98/308 (31%), Gaps = 42/308 (13%) Query: 74 LISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVESRK 127 IS + ++ A N+ +++ + + + ++ Sbjct: 7 WISAFLEAQAAELGAARNTLLAYGRDLKDFDSFLTHRNLDFHAAAQADVEAYLIACDAEG 66 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + ++ + L++++ L+++A + + + NP L + P R + + ++ ++ + Sbjct: 67 LSKATRARRLSAVKQLYRFAFEEGWRSDNPALQITGPGRDRKLPKTLSEAEVDRLLEAAR 126 Query: 188 EGSQPRL-------AFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD 239 + E L +G+R ++ V + + + K G V L Sbjct: 127 SSGRNTADRARNTCLMELLYATGMRVTELVSLPVSAARGDPRMLLIRGKGGKERMVPLSP 186 Query: 240 GFMKLLAMT----------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV- 282 + P + + + +F + K A AGV Sbjct: 187 PARDATSEWLRLRDEKEALKKADGHPPSRFLYASRGVSGHLTRNRFYLLIKELAVDAGVS 246 Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 + H +R AT GA + G V E YT + R+S Sbjct: 247 PSKVTPHTLRHAFATHLLANGADLRSIQTLLGHADVATTEIYTHVLE---------ARLS 297 Query: 341 SVVDSDDP 348 +V + P Sbjct: 298 ELVLTHHP 305 >gi|237745754|ref|ZP_04576234.1| phage integrase [Oxalobacter formigenes HOxBLS] gi|229377105|gb|EEO27196.1| phage integrase [Oxalobacter formigenes HOxBLS] Length = 354 Score = 113 bits (282), Expect = 4e-23, Method: Composition-based stats. Identities = 48/320 (15%), Positives = 93/320 (29%), Gaps = 16/320 (5%) Query: 17 RHGKIIY-YFRKGHGRRIRLPYPHE-STFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 + GK + F G+RIR L R+Y+ P + T Sbjct: 5 KRGKTYWISFTAPDGKRIRCSAGTSNRQKAQQLFDKLKHEAWNRKYLGIPER--HTWDEA 62 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSS 132 + + S S + +IT I E +K TP+ Sbjct: 63 ALLWIREKTDKK----SLKDDVSMLRWLTPFLRSRYLDEITRPMIARIGEIKKAESTPAR 118 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 A ++L+ +R +F AV+ + ++ + +R T + + F Sbjct: 119 ANRYLSLLRAIFNRAVKIWE-WLPKAPTITLYREPKLRVRYLT--PEEIRRVFDELPDHQ 175 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252 + F F + +GLR S+ + +I + + + Sbjct: 176 KPIFTFSIMTGLRRSNVLNLRWDQVDFMQDAIIISGNEMKAGKTHVVPMSATVKQILMDQ 235 Query: 253 ETFFINNDKQKMNAT--QFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMA 309 F+ + G+ + H R A+I G +EL Sbjct: 236 VGKHPQYVFTYRGRRIGDIKTAFRKALKRTGITDYRWHDNRHTWASILIQNGVPLNELQE 295 Query: 310 TYGWKTVDQAETYTKGADRI 329 W + + + Y + + Sbjct: 296 MGAWNSAEMVKRYAHLSPQK 315 >gi|169343416|ref|ZP_02864420.1| prophage lambdaba04, site-specific recombinase, phage integrase family [Clostridium perfringens C str. JGS1495] gi|169298502|gb|EDS80588.1| prophage lambdaba04, site-specific recombinase, phage integrase family [Clostridium perfringens C str. JGS1495] Length = 368 Score = 113 bits (282), Expect = 4e-23, Method: Composition-based stats. Identities = 53/347 (15%), Positives = 110/347 (31%), Gaps = 36/347 (10%) Query: 18 HGKIIYYFRKGH----GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 G G+ +RIR+ T A S+ P+ K LK Sbjct: 9 KGNWQVVISLGNDPVTKKRIRVKKQGFKTKKEAEKFVNEYSSKVDNGFLLPKSKDIYLKD 68 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR-----K 127 I ++ + S+ +N++ ++ S + II G++ ++ T I++ Sbjct: 69 FILDWFYNHKVLSIGINTKNNYLSRIETYIIPLLGNYKLTELDTLTIQNFYNYLLTKDNP 128 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 PSSA + + ++ K+A + + + P + + I W+K+ + F + Sbjct: 129 LKPSSAKKVIEALSNCLKYAKKLKLITYLPTDIEK-VNIEKPKIEFWSKQQLDFFLN-EI 186 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247 + + +G+R + C + + + + L Sbjct: 187 KDTYLYFPVLICALTGVRVGELCGLKWCDVDFGKSYLNITRQVISDKSTNTLVCTENLKT 246 Query: 248 TP--------------------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--- 284 T + ++ + + N S+ F K K Sbjct: 247 TKSDRTISIPKILLKEFEKNLKDPNDFIVLSRENEMCNPRNISMDFTKKVNKYKDKLPQI 306 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330 S HG+R AT+ G + G + TYT + ++ Sbjct: 307 SIHGLRHTHATLLILNGENIKIVSDRLGHNDITTTLNTYTHIMEEMK 353 >gi|114762955|ref|ZP_01442385.1| Phage integrase [Pelagibaca bermudensis HTCC2601] gi|114544279|gb|EAU47287.1| Phage integrase [Roseovarius sp. HTCC2601] Length = 316 Score = 113 bits (282), Expect = 4e-23, Method: Composition-based stats. Identities = 35/310 (11%), Positives = 91/310 (29%), Gaps = 32/310 (10%) Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG 122 P+ T+ + K+ L ++ ++ S+ I K GD ++ +R Sbjct: 2 PQTMTKTVTDACESWLKTCERNQLERSTLKAYRSHARVHIEPKIGDLLLGDLSRGQVRDF 61 Query: 123 VESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW-TKED 178 + + + + + S+R + AV +E++ + V+ +R+ Sbjct: 62 MHELLDDGISQALVRKVMVSLRAVLSEAVEREWIEHDVATDVKMRRRRRSESDERVIPTK 121 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ---------HLQNNIFSIKTQKT 229 + + + R F +++G+R S+ H++ Sbjct: 122 DEIRLIVENAPASHRAMFIAAIFTGMRISELRGLTWDNVDLDRGLVHVRQRADEHCVLGK 181 Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ----------FSIWFKAKATK 279 L+ T + + + ++ FK Sbjct: 182 PKSRAGHRDIPMTPLVRDTLAQWQRTVPVTVQNLVFPNGAGKIQNYSNIYNRVFKPMLVA 241 Query: 280 AGV-------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRL 331 G+ H +R +A++ + G ++ G ++ Y + Sbjct: 242 NGIVDAAGEPKFGLHALRHAAASLFIEQGWNPKKIQTLLGHASITMTMDVYGHLFENAEE 301 Query: 332 GIKNSRRISS 341 + ++ S Sbjct: 302 DVSMFAKLES 311 >gi|312111963|ref|YP_003990279.1| integrase [Geobacillus sp. Y4.1MC1] gi|311217064|gb|ADP75668.1| integrase family protein [Geobacillus sp. Y4.1MC1] Length = 384 Score = 113 bits (282), Expect = 4e-23, Method: Composition-based stats. Identities = 51/378 (13%), Positives = 119/378 (31%), Gaps = 55/378 (14%) Query: 11 VTKERTRHGKIIYYFRK--------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62 + KE+ + +YFR G ++ T + + Y Sbjct: 7 LIKEKKKG----FYFRIDVGKDPVTGKRKQASFGPFRTKTEAKKELLKIKAQVDDGSYFK 62 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRS 121 + + + +++ ++ + + S E I++ +ITT I S Sbjct: 63 ESTED---FPMFMERWFNTSYKRTVEITTAKSREYVIRNHIMKYFQHKKINEITTFDIDS 119 Query: 122 GVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + ++ + Q + F AV+ V +NP + + PK K+E WT ++ Sbjct: 120 FYVDKLDNGYSGAYIRQMHNLLNQAFDQAVKWSLVKVNPVKNAKPPKVKSEEKITWTVDE 179 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII----- 233 + +F + S + + +++G+R + + I+ +++ + Sbjct: 180 VNRFLNLIKNSSME-IPYLLAIFTGMRRGEVLGLKWDDVDFENKKIRIKRSLCFVSGKGL 238 Query: 234 --------------------------TVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT 267 + + + L +D + ++ Sbjct: 239 IFKEPKTKKSKRQISISQHVVNILKKHKQKQEFQKEKLGTQYQDNNLIVCTDDGKPLDPR 298 Query: 268 QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKG 325 F +A V + S H +R ATI G + G V + Y+ Sbjct: 299 NLLRQFYRLIEEANVPRISFHDLRHTHATILMQQGENPKVVSERLGHSRVGITLDLYSHV 358 Query: 326 ADRIRLGIKNSRRISSVV 343 +D L + + + + + Sbjct: 359 SDD--LQEQAAEKFENAL 374 >gi|256840382|ref|ZP_05545890.1| tyrosine type site-specific recombinase [Parabacteroides sp. D13] gi|256737654|gb|EEU50980.1| tyrosine type site-specific recombinase [Parabacteroides sp. D13] Length = 376 Score = 113 bits (282), Expect = 4e-23, Method: Composition-based stats. Identities = 50/360 (13%), Positives = 102/360 (28%), Gaps = 37/360 (10%) Query: 4 SLRLPPFVTKERTRHGKIIYY---FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60 ++ P + + +G Y +R G L + Sbjct: 9 KVKEPIRLRTKELANGSKSLYLDIYRNGKRTYEYLKMYLIPETDRNARQQNETTMAAANA 68 Query: 61 INSPRKKPTT--------------LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS 106 I S R T L + Y++ +S + + Sbjct: 69 IKSKRIIELTSGEAGIMNHKDKVYLLDWMQLYKEEQKKRGKKN--IGQIKSVTGILKEYA 126 Query: 107 GDF-DYRKITTKHIRSGVESR---------KHTPSSAIQFLTSMRVLFKWAVRQEYVAIN 156 G+ +I ++ + S+ + AVR + + N Sbjct: 127 GERFTLNQIDLTFCHGYIDYMLTNYHPKGKPISASTRNTYYQIFNGALNAAVRAKRILKN 186 Query: 157 P---CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213 P E+PK T E+++ + + + A+ F + GLR SD Sbjct: 187 PFNEMEKSEKPKMPESVRSYMTIEEVRSLIATPMQNEGVKSAYLFSCFCGLRISDIIGLQ 246 Query: 214 VQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272 + + + + + L P + ++ + + Sbjct: 247 WKDVFIDNGQYRLAVAMQKTKEPIYLPLSNEALKWMPERGDKTADDHVFDL--PSGINQL 304 Query: 273 FKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 K A AG++K + H R AT+ GA + + G +V + Y K ++ + Sbjct: 305 IKPWAKAAGISKRFTFHTARHTFATMMLTLGADLYTVSKLLGHTSVKMTQVYAKIVNKKK 364 >gi|27365771|ref|NP_761299.1| Integrase [Vibrio vulnificus CMCP6] gi|27361920|gb|AAO10826.1| Integrase [Vibrio vulnificus CMCP6] Length = 402 Score = 113 bits (282), Expect = 4e-23, Method: Composition-based stats. Identities = 47/358 (13%), Positives = 99/358 (27%), Gaps = 45/358 (12%) Query: 20 KIIYYFRKGHGRR-IRLPYPHESTFIPAYMSALTGSTP----------KREYINSPRKKP 68 K Y+R +R L + T A A + + E ++ Sbjct: 41 KYYLYYRIHGKQRNFLLGSANALTPAQARDLAKEKAGQVAAGEDVQVTRHEAKKREQRNS 100 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-- 126 TL + E+ SA+ S+ + + +IT I+ V R Sbjct: 101 LTLSKFLEEHY-SAYLMSINEKTAQKSLMCIQSNFKHLSTKPLVEITAWDIQQWVAERSK 159 Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 P++ +R +F AV ++ + +V+ P+ + IR + + Sbjct: 160 AGRAPATISYAYNRLRAVFNRAVEWGFIDSHSLDNVKIPRIDNKRIRYLSVSEEAALLES 219 Query: 186 WSEGS--------------QPRLAFEFL-----------LYSGLRCSDSCRAGVQHLQNN 220 RL + L +G+R + H+ Sbjct: 220 LKARDARLKDEALQRYGKRAQRLVSQRYVDFLEPLIVLALNTGMRKGEMLSLKWSHINME 279 Query: 221 IFSIKTQKTG----TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK 276 + + T+ L + +L + ++ + +++ Sbjct: 280 DRYLTIRSENAKSKNKRTIPLNNTVYTMLQAWHEQNPDTELVFERNGKPLDSYQYQWESL 339 Query: 277 ATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 AG+ H +R A+ A + + G + Y A + Sbjct: 340 LKDAGIENFRFHDLRHHFASKLVMKEADLNVVRELLGHADLKMTLRYAHLAPEHKASA 397 >gi|229051739|ref|ZP_04195198.1| Phage integrase [Bacillus cereus AH676] gi|228721643|gb|EEL73128.1| Phage integrase [Bacillus cereus AH676] Length = 387 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 38/356 (10%), Positives = 87/356 (24%), Gaps = 47/356 (13%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 R R K Y R + + A K + + T Sbjct: 5 RKRKDKWEYRIRYKEMGKYKETSKGGFKTKKEAQLAAAKVEEKLATGGNLKDSKITFNEY 64 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR--KHTPS 131 + E+ + G++A + + +E I+ G+ + +T + + K++ Sbjct: 65 LYEWLNTYKKGNVAPRTYMVYEKNIRLHILPAFGELRLKDLTRIKYQKFINGLMEKYSKK 124 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 + +M AV + + S + + + + + Sbjct: 125 TVETINVTMHHALDIAVNELGILEKNPTSKIKLRTTRVTSKDDEIKCYDIDELQQFLNYV 184 Query: 192 PRLAFEFLLY--------SGLRCSDSCRAGVQHLQNNIF--------------------- 222 + F + +GLR + + + Sbjct: 185 LKEKGGFKYFSLFMFLSRTGLRIGECLALQWEDVDFEEQKLFINKTLINTKRSEKILFGP 244 Query: 223 ------------SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS 270 T + +E +K F ++ ++ + Sbjct: 245 PKNKSSKRTISLDPSTISHLKKMKIEQNKQVLKNGKYYKDYNFVFTHEDNSCMLHPSSLK 304 Query: 271 IWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324 + K + HG R A +GA + G ++D Y Sbjct: 305 FLL-EASKKGNFKYITLHGFRHTHAVHLLQSGANIKYVSERLGHSSIDMTANVYLH 359 >gi|307266069|ref|ZP_07547615.1| integrase family protein [Thermoanaerobacter wiegelii Rt8.B1] gi|306918938|gb|EFN49166.1| integrase family protein [Thermoanaerobacter wiegelii Rt8.B1] Length = 291 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 31/291 (10%), Positives = 85/291 (29%), Gaps = 26/291 (8%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---- 128 + ++ + + N+ IS+ + + ++ D ++ + + V ++ Sbjct: 2 DWLEKFEEELKQTGKSQNTIISYCTDIKEFLKWFSDTYAKEFDGRILEQDVREYRNYLLN 61 Query: 129 ----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 PSS + + +++ ++ ++ + IR ++ ++ + K Sbjct: 62 IAKLKPSSINRKMAALKNFNQFLIQTGTGIEADICGISVADIHDREIRTISRNELNRLKR 121 Query: 185 FWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQ---------NNIFSIKTQKTGTII 233 R L +G+R S+ + + + I+ K Sbjct: 122 AVYASGNKRDIALIELLIGTGVRVSELVSLTTEDIHLTARNGKENYSYIVIRNGKGNKYR 181 Query: 234 TVELPDGFMKLLAMTPIGKET---FFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGV 289 + L K L + + + + K AG+ SAH + Sbjct: 182 EIPLNSQVKKALEEYLVTRSHLSGRIFIGQRGPLRRESVDKIIKKYCRMAGIEEISAHVL 241 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAET-YTKGADRIRLGIKNSRRI 339 R T + G ++ Y + + + ++ Sbjct: 242 RHTFCTRLMSENVPIPIISKLAGHSSIQTTMDFYVRVSRADKTA--AVEKL 290 >gi|258425113|ref|ZP_05687983.1| phage integrase [Staphylococcus aureus A9635] gi|257844696|gb|EEV68740.1| phage integrase [Staphylococcus aureus A9635] Length = 344 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 47/337 (13%), Positives = 103/337 (30%), Gaps = 26/337 (7%) Query: 13 KERTR--HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP--RKKP 68 + +TR GK Y K G+R R A + K + S Sbjct: 8 RMKTRCYDGKKWQYEFKHEGKRYRKKGFRTK------REANSAGLDKLNELRSGFNIDNY 61 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVES-- 125 TL+ + K+ + N+ + + I + G + KI + + + Sbjct: 62 ITLEEYFENWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDYS 121 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER----PKRKTEGIRPWTKEDMQQ 181 ++H + + ++R A+ + NP V P + + E Sbjct: 122 KEHAKETIRKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEIL 181 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-------KTGTIIT 234 + ++ LA ++ +G R S + ++H+ +I I Sbjct: 182 KDHVRKKRTRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTNTSPRYISIA 241 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293 M +++ I + + +N + K+ + ++H +R Sbjct: 242 KSDMKHIMDVISTFAISYDGYIFKEGGSIINLHAINNALKSACRVNNIPIITSHALRHTH 301 Query: 294 ATISADAGATAHELMATYGWKTVD-QAETYTKGADRI 329 + G + H + G K + Y+ + Sbjct: 302 CSYLLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEK 338 >gi|238750683|ref|ZP_04612182.1| Tyrosine recombinase [Yersinia rohdei ATCC 43380] gi|238711073|gb|EEQ03292.1| Tyrosine recombinase [Yersinia rohdei ATCC 43380] Length = 263 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 43/247 (17%), Positives = 79/247 (31%), Gaps = 17/247 (6%) Query: 102 IIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPC 158 I G ++ + +RS V K SS L+++R W V Q + NP Sbjct: 3 IAEPMGLVHWQTLDAAQVRSLVSRSKRAGLHSSSLALRLSALRSFLDWLVSQGVLNANPA 62 Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQ 215 V P+ + +++ + + R E + +GLR S+ + Sbjct: 63 KGVSTPRSGRHLPKNIDVDEVDKLLDIDLNDPLAVRDRAMLEVMYGAGLRLSELVGMNCK 122 Query: 216 HLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMT-------PIGKETFFINNDKQKMNAT 267 H+ + K V + + L + F+ N ++++A Sbjct: 123 HVDLASGEVWVMGKGSKERKVPIGKTAVTWLEHWLALRELFEPQDDAIFLANTGKRISAR 182 Query: 268 QFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 F K GV + H +R AT ++ + G + + YT Sbjct: 183 NVQKRFAEWGVKQGVSSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTH- 241 Query: 326 ADRIRLG 332 D L Sbjct: 242 LDFQHLA 248 >gi|329955587|ref|ZP_08296495.1| site-specific recombinase, phage integrase family [Bacteroides clarus YIT 12056] gi|328525990|gb|EGF53014.1| site-specific recombinase, phage integrase family [Bacteroides clarus YIT 12056] Length = 330 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 35/264 (13%), Positives = 81/264 (30%), Gaps = 14/264 (5%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRK 127 L+ Y + + + ++S D + +TT IR+ E RK Sbjct: 53 AELLQAYLSAKKIEGCSEKTIGYYQSTIDTLFVAVC-KPVCDVTTNDIRNYLSGYQEQRK 111 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + + F W ++++ +P + R + ++ T E+M+ + Sbjct: 112 VSRVTIDNMRRIFSSFFAWLEDEDFIVKSPVRRIHRVRTESLVKEVLTDENMEVLRDSCQ 171 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLA 246 E + + L +G+R + + + + V L Sbjct: 172 E-IRDIAMIDLLASTGMRVGELVNLNREDIDFHERQCVVFGKGNKEREVYFNARTKIHLQ 230 Query: 247 MTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISAD 299 + +N +++ + + + K + H R+ AT++ D Sbjct: 231 NYLSSRTDDNPALFVSLSNPHSRLSISGVEVRLRTLGRKVNIAKVHPHKFRRTLATMAID 290 Query: 300 AGATAHELMATYGWKTVDQAETYT 323 G ++ G +D Y Sbjct: 291 KGMPIEQVQRLLGHVKIDTTLHYA 314 >gi|282901889|ref|ZP_06309792.1| Phage integrase [Cylindrospermopsis raciborskii CS-505] gi|281193227|gb|EFA68221.1| Phage integrase [Cylindrospermopsis raciborskii CS-505] Length = 287 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 39/260 (15%), Positives = 86/260 (33%), Gaps = 13/260 (5%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 I+++ + +S+ ++ I D T H R+ E + + Sbjct: 23 AINQWL-----YGKSNHSKRNYTRVIRSYISYLSDIHIANSTAAHFRNYQEYLYQSGKTI 77 Query: 134 IQFLT---SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 T ++ F + + + N V+ PK + + Sbjct: 78 NTINTYTNIIKSFFTFLRDESVLPTNITHRVKSPKPVSALRERILTRAEIDAMITLETNT 137 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI---FSIKTQKTGTIITVELPDGFMKLLAM 247 + RL + L + GLR S+ +++N + T K T+ +P L Sbjct: 138 RNRLILQLLFFCGLRVSELTILLWADIKDNGSTAYVHITGKGNKQRTLIIPPLLWASLKS 197 Query: 248 TPIGKETFFINNDK--QKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAH 305 E+ + K + + + + + G++ S H +R A+++ GA + Sbjct: 198 HKTTNESPVFKSRKGGKNLTQKAVWDIVRTASQRIGISASPHWLRHTHASLALHNGADIN 257 Query: 306 ELMATYGWKTVDQAETYTKG 325 ++ + G +V Y Sbjct: 258 QVSTSLGHSSVATTTKYLHA 277 >gi|310828727|ref|YP_003961084.1| phage integrase family site specific recombinase [Eubacterium limosum KIST612] gi|308740461|gb|ADO38121.1| phage integrase family site specific recombinase [Eubacterium limosum KIST612] Length = 386 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 43/362 (11%), Positives = 104/362 (28%), Gaps = 51/362 (14%) Query: 12 TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 K++ ++G Y++R H R + T + + + + + + Sbjct: 6 YKKKVKNGNTYYFYRLNHKNLKRPRDLYGKTVQELVEKIDSLTYQLDRNVTTTKVR---F 62 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK--SGDFDYRKITTKHIRSGVESRKHT 129 + + H + + + S FD I+ + +T ++ + S Sbjct: 63 GDYMKNWLDKVHGINKKAGTIQGYSSLFDNYIKDSSLYNIQLTDLTALDVQDYLNSLLRK 122 Query: 130 PSSAIQFLTSMRVL------FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 S ++S++ L + + ++ V + + +++P +G +Q + Sbjct: 123 GKSFN-VVSSVKKLIGPCIRYAYTQQKILVDFSRSIKIQKPSEIDDGTNVNPMTKEEQEE 181 Query: 184 S-FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242 EG+ F L +G R + + F IK KT + ++ Sbjct: 182 FIKAIEGATYEPLFLMALNTGARVGELLALTWDDVDFINFEIKITKTLEYQKDKETKKYI 241 Query: 243 KLLAMTPIGKETFFINNDKQKM------------------------------------NA 266 ++ + + N Sbjct: 242 HIINSPKTKAGNRTVPFPEFMAPYLKNLRAKELEKKMRLQNKYADRNLVFANRLGDFLNN 301 Query: 267 TQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 + + + ++G+ H +R AT + G + + G V YT Sbjct: 302 SSVRVSMDSILKESGLPHFRFHDLRHTFATRLFELGESPRTIQTILGHTDVATTLNIYTH 361 Query: 325 GA 326 Sbjct: 362 VL 363 >gi|220917358|ref|YP_002492662.1| tyrosine recombinase XerD [Anaeromyxobacter dehalogenans 2CP-1] gi|219955212|gb|ACL65596.1| tyrosine recombinase XerD [Anaeromyxobacter dehalogenans 2CP-1] Length = 298 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 42/279 (15%), Positives = 88/279 (31%), Gaps = 24/279 (8%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVE-- 124 L+ + + LA NS ++ + + G + ++ I++ + Sbjct: 4 LEPALDLFLAHVRVEKGLAENSVEAYGRDLRRYLEHLDELGVDAWERVGRGEIQAHLAEL 63 Query: 125 -SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 R +P S + L+++R L + + +P +E P+ + +++ + Sbjct: 64 VRRGLSPRSQARALSAIRSLHRLLAAERVTPADPSDEIESPRPGRRLPGLLSHDEVDRLL 123 Query: 184 SFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-----------NNIFSIKTQK 228 + G + R E L +GLR S+ + + N I Sbjct: 124 AAPDVRSAAGIRDRAMLELLYATGLRVSELVSLQLNDVNLETRVLVARGKGNKERIVPVG 183 Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF--KAKATKAGVNKSA 286 V+ + + + F+ +M F+ A+ S Sbjct: 184 APAAAAVKAYLAVARERLLHGRRSKDLFVTPRGGRMTRQGFAKILDRCARRAGIRRRISP 243 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 H +R AT + GA + G V + YT Sbjct: 244 HKLRHSFATHLLEGGADLRAVQEMLGHADVSTTQIYTHV 282 >gi|53714080|ref|YP_100072.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] gi|253567394|ref|ZP_04844843.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5] gi|255009170|ref|ZP_05281296.1| tyrosine type site-specific recombinase [Bacteroides fragilis 3_1_12] gi|298483947|ref|ZP_07002117.1| tyrosine type site-specific recombinase [Bacteroides sp. D22] gi|313146917|ref|ZP_07809110.1| integrase [Bacteroides fragilis 3_1_12] gi|52216945|dbj|BAD49538.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] gi|251943963|gb|EES84491.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5] gi|298269856|gb|EFI11447.1| tyrosine type site-specific recombinase [Bacteroides sp. D22] gi|313135684|gb|EFR53044.1| integrase [Bacteroides fragilis 3_1_12] Length = 376 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 50/360 (13%), Positives = 102/360 (28%), Gaps = 37/360 (10%) Query: 4 SLRLPPFVTKERTRHGKIIYY---FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60 ++ P + + +G Y +R G L + Sbjct: 9 KVKEPIRLRTKELANGSKSLYLDIYRNGKRTYEYLKMYLIPETDRNARQQNETTMAAANA 68 Query: 61 INSPRKKPTT--------------LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS 106 I S R T L + Y++ +S + + Sbjct: 69 IKSKRIIELTSGEAGIMNHKDKVYLLDWMQLYKEEQKKRGKKN--IGQIKSVTGILKEYA 126 Query: 107 GDF-DYRKITTKHIRSGVESR---------KHTPSSAIQFLTSMRVLFKWAVRQEYVAIN 156 G+ +I ++ + S+ + AVR + + N Sbjct: 127 GERFTLNQIDLTFCHGYIDYMLTNYRPKGKPISASTRNTYYQIFNGALNAAVRAKRILKN 186 Query: 157 P---CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213 P E+PK T E+++ + + + A+ F + GLR SD Sbjct: 187 PFNEMEKSEKPKMPESVRSYMTIEEVRSLIATPMQNEGVKSAYLFSCFCGLRISDIIGLQ 246 Query: 214 VQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272 + + + + + L P + ++ + + Sbjct: 247 WKDVFIDNGQYRLAVAMQKTKEPIYLPLSNEALKWMPERGDKTADDHVFDL--PSGINQL 304 Query: 273 FKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 K A AG++K + H R AT+ GA + + G +V + Y K ++ + Sbjct: 305 IKPWAKAAGISKRFTFHTARHTFATMMLTLGADLYTVSKLLGHTSVKMTQVYAKIVNKKK 364 >gi|121606322|ref|YP_983651.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2] gi|120595291|gb|ABM38730.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2] Length = 345 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 47/297 (15%), Positives = 90/297 (30%), Gaps = 39/297 (13%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKHTP 130 L++ Y LA + + + +++ + + H+R V Sbjct: 18 LVTRYLAYVRVEKRLASRTVELYMADLEKLQANARKAGVALTDVKHTHLRRWVAQMHSRG 77 Query: 131 SS---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S L+ R + W R+ V NP V PK + + ++ Q SF Sbjct: 78 RSGRGIALILSGWRGFYTWLGREGLVPGNPVQDVRSPKIAKPLPKALSVDEAVQLASFEL 137 Query: 188 EGS--------QPRLAFEFLLYSGLRCSDSCR--------AGVQHLQNNIFSIKTQKTGT 231 E + + + E L GLR S+ A + K Sbjct: 138 EATDGDPFLEARDQCITELLYGCGLRISELVGLDAQASGKARGWIDMQGGDAHVLGKGEK 197 Query: 232 IITVELPDGFMKLLAMTPIGKETF--------------FINNDKQKMNATQFSIWFKAKA 277 +V + +K L + + FIN ++ + K ++ Sbjct: 198 RRSVPVGGAALKSLHKWLAARSLWARPGADGVQGGEALFINQRGSRLTPQHIRVRLKQRS 257 Query: 278 TKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 +AG+ H +R A+ + + G ++ + YT+ D L Sbjct: 258 QQAGLATPVHPHMLRHSFASHVLQSSGDLRAVQELLGHASITTTQAYTR-LDFQHLA 313 >gi|306845920|ref|ZP_07478487.1| integrase family protein [Brucella sp. BO1] gi|306273555|gb|EFM55400.1| integrase family protein [Brucella sp. BO1] Length = 305 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 53/286 (18%), Positives = 98/286 (34%), Gaps = 15/286 (5%) Query: 35 LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRIS 94 P F+ Y+ KP TL WL+SEY SA + L+VN++ Sbjct: 2 KSKPDTPAFMHEYLRL-------TRDRKIAEAKPKTLAWLVSEYLASADYQKLSVNTKRD 54 Query: 95 FESYFDQIIRKSGDFDYRKITTKHIRS----GVESRKHTPSSAIQFLTSMRVLFKWAVRQ 150 +E I K G + + + R + + TP SA +T + + WA + Sbjct: 55 YERMTGVISIKFGTLPVQALEARGARRLFMDWRDEMRATPRSADLHITVLARIMSWAKNR 114 Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210 E + NP + + W + +F + + L++ R D Sbjct: 115 EIIIRNPLEKAGKLHKSNRKDIIWMPSQLSKFLNEAPAHLSD--VVKMALWTMQRKGDVL 172 Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF-INNDKQKMNATQF 269 +++ I KTG + ++ D + +L T N+ ++ F Sbjct: 173 GMPTIAYSDDLLWITQGKTGARVRIKPADEILPILRTAKEKNRTRVLANSFGDMWTSSGF 232 Query: 270 SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWK 314 FK + + + + H +R + T + G + G Sbjct: 233 DSSFKKEMNRLEIKGVTFHDLRGTAITYAYANGMDVERIAEISGHS 278 >gi|66395519|ref|YP_239890.1| ORF011 [Staphylococcus phage 42E] gi|62636012|gb|AAX91123.1| ORF011 [Staphylococcus phage 42E] Length = 345 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 44/329 (13%), Positives = 100/329 (30%), Gaps = 24/329 (7%) Query: 19 GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP--RKKPTTLKWLIS 76 GK Y K G+R R A + K + S TL+ Sbjct: 8 GKKWQYEFKHDGKRYRKKGFRTK------REANSAGLDKLYELRSGFNIDNGITLEEYFK 61 Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVES--RKHTPSSA 133 + K+ + N+ +++ I + G + KI + + + ++H + Sbjct: 62 NWIKTYKEPVVKENTYRHYKNALQHIQQHKIGKMELSKINKQVYQKFINDYSKEHAKETI 121 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVER----PKRKTEGIRPWTKEDMQQFKSFWSEG 189 + ++R A+ + NP V P + + E + + Sbjct: 122 RKTNGAIRSALDDALYDGLIFKNPAHKVNYKAGKPTKSEQEKFISVTEYEILKEHVKKKR 181 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-------KTGTIITVELPDGFM 242 ++ LA ++ +G R S + ++H+ +I I M Sbjct: 182 TRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTDTSPRHISIAKSDMKHIM 241 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301 +++ I + + + + K+ + ++H +R + G Sbjct: 242 GVISSFAISYDGYIFKESGFIITLQAINNALKSACRVNNIPIITSHALRHTHCSYLLAKG 301 Query: 302 ATAHELMATYGWKTVD-QAETYTKGADRI 329 + H + G K + Y+ + Sbjct: 302 VSIHYISKRLGHKNIAITTSVYSHLLEEK 330 >gi|114331486|ref|YP_747708.1| phage integrase family protein [Nitrosomonas eutropha C91] gi|114308500|gb|ABI59743.1| phage integrase family protein [Nitrosomonas eutropha C91] Length = 341 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 61/342 (17%), Positives = 109/342 (31%), Gaps = 30/342 (8%) Query: 7 LPPFVTKE-------RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE 59 PP++ K R R KI YY+ G R + + Y A+ Sbjct: 3 RPPYIHKNLPARMRARQRGKKIYYYYDTGGKPRKEISLGTD------YAIAVKKWAELEI 56 Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTK 117 + T +++ Y + A ++ S + + R D +I Sbjct: 57 DAKPKHNQIITFRYVAERYMREIMATK-APRTQKDNLSEIEWLYRFFDDPPAPLEEIEPI 115 Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 HIR ++ R+ A + ++ R+ P + +G + E Sbjct: 116 HIRQYLDQRQAKTR-ANREKALFSHIWN-KAREWGYTSLPNPCAGIKGNREKGRKDVYIE 173 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237 D + R A + +G R +D L + ++K QKTG + ++L Sbjct: 174 DEIYMAVYKVASHPLRDAMDMAYLTGQRPADILALRESDLTDGRINVKQQKTGKKLRIKL 233 Query: 238 PDGFMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGVNK---SAH 287 L+ K I + QK++ T F AG+ K Sbjct: 234 EGELAALIDRIKSRKVKHTIRSLYLIVDETGQKLSYTTLRSHFDKARELAGIKKEEFQFR 293 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R + T A++ + G + ETY + DR Sbjct: 294 DLRAKAGTDKAESSGDIRQAQKQLGHANITMTETYIR--DRK 333 >gi|54027830|ref|YP_122070.1| putative recombinase [Nocardia farcinica IFM 10152] gi|54019338|dbj|BAD60706.1| putative recombinase [Nocardia farcinica IFM 10152] Length = 311 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 43/276 (15%), Positives = 86/276 (31%), Gaps = 23/276 (8%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSA 133 I ++ + N+ ++ D +T +R + P++ Sbjct: 20 IEQFLTDLANANRPANTLRAYRGDLTGFAEHV-DGGIDGVTVAAVRGFLSGIADLAPATR 78 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG---- 189 + ++ +WAVR + +A NP V+ RP D+ + + Sbjct: 79 KRKRAAVAAFCRWAVRHDLLAANPMDKVDTITVPKTLPRPAPAADIAKVFAAICARRPRK 138 Query: 190 ------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-----------I 232 + R+ FE G R S+ C V+ + + G Sbjct: 139 DVALDVLRDRVLFETAYVCGARASEVCELYVEDFDLRLDDEHVRLHGKGGTVRTVLLDDR 198 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKF 292 V + ++ T IN ++ + + AGV+ H +R Sbjct: 199 GYVAMLRLYLDRTGYTAGPMFRASINGRGGPLSYSAAHHRWSRYCAAAGVDIDIHQLRHS 258 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 AT +AG + + G + + + Y AD+ Sbjct: 259 HATELINAGVSIEVVRKRLGHASTETTQIYALLADQ 294 >gi|319644101|ref|ZP_07998650.1| hypothetical protein HMPREF9011_04253 [Bacteroides sp. 3_1_40A] gi|317384343|gb|EFV65312.1| hypothetical protein HMPREF9011_04253 [Bacteroides sp. 3_1_40A] Length = 381 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 51/373 (13%), Positives = 112/373 (30%), Gaps = 36/373 (9%) Query: 4 SLRLPPFVTKERTRHGKIIYYFR-KGHGRRIR-------LPYPHE------STFIPAYMS 49 ++ P + + +G Y G+R +P + A + Sbjct: 9 KVKEPIRLRMKSLSNGSKSLYLDIYRDGKRTYEYLKMYIIPETDSNSRRQNQATMDAANA 68 Query: 50 ALTGSTPKREYINSP---RKKPTTLKWLISEYRKSAHWGSLAVNSR--------ISFESY 98 + + + RK T L + Y ++ S+ + Sbjct: 69 IKSKRIIELTSNEAGIVFRKDKTFLLDWMQVYMEAQESAGKKDGSQIKIAMRILKDYAGE 128 Query: 99 FDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158 + + GDF IT + + + + + ++ AVR++ + NP Sbjct: 129 MVTLDQIDGDFCRGYITYLLTEYHPKGKDISNYTLHNYYRALNGALNSAVRKKKMKANPF 188 Query: 159 ------LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212 + +P+ + + + E + A+ F + GLR SD + Sbjct: 189 NELEKSEKIRKPESMRSYMTIEEVQALIDTPMPHEEYEIVKCAYLFSCFCGLRISDIIKL 248 Query: 213 GVQHLQNNIFSIKTQKTGTIITVELPDG-FMKLLAMTPIGKETFFINNDKQKMNATQFSI 271 + + + + + + L P +N +A + Sbjct: 249 KWSDVFVDRGQYRLAVSMKKTKEPIYLPLSPEALKWMPERGGKSSEDNVFDLPSANTIRM 308 Query: 272 WFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 K A AG++K H R AT+ GA + + G V + Y K ++ Sbjct: 309 QLKPWAKAAGISKRFSYHTSRHTFATMMLTLGADLYTVSKLLGHADVKMTQVYAKIINKK 368 Query: 330 RLGIKNSRRISSV 342 + + ++ + Sbjct: 369 K--DEAVNLVNGL 379 >gi|254713562|ref|ZP_05175373.1| site-specific tyrosine recombinase XerD [Brucella ceti M644/93/1] gi|254716083|ref|ZP_05177894.1| site-specific tyrosine recombinase XerD [Brucella ceti M13/05/1] Length = 307 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 84/289 (29%), Gaps = 33/289 (11%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR---K 127 I + + A N+ S+ + + + + T HIR +++ Sbjct: 6 AIENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKGVNLAEAETGHIRMTLDTMAAQG 65 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185 P+S + L+++R F++ + + +P ++ PK++ + + E++ + Sbjct: 66 FAPTSQARRLSALRQFFRFLYSEGFRQDDPTGFLDAPKKQKPLPKIMSVENVGKLLDRAA 125 Query: 186 -----------WSEGSQPRLAFEFLLYSGLRCSDSC-------RAGVQHLQNNIFSIKTQ 227 + + E L +GLR S+ R + L K + Sbjct: 126 LEANEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKGSKDR 185 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---- 283 L + G + + F + Sbjct: 186 MVPLSRKARDALQKFLTLRDSLPGSDDNPWLFPAFSESGHLARQVFARELKGLAARAGLA 245 Query: 284 ---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 S H +R A+ GA + G + + YT + Sbjct: 246 ASSVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEER 294 >gi|307693102|ref|ZP_07635339.1| integrase family protein [Ruminococcaceae bacterium D16] Length = 377 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 51/351 (14%), Positives = 107/351 (30%), Gaps = 51/351 (14%) Query: 23 YYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR---KKPTTLKWL 74 YY R +G+RI+ + +A G P+ + TL Sbjct: 19 YYVSMDLGRDENGKRIKQYRTFPT-----LAAARNGLKEFHATREQPQFVPAQEMTLSQW 73 Query: 75 ISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129 + + S + A + +++ + I GD K++ K ++ + Sbjct: 74 LEYWMDSIVRPNRAETTVYAYQKIIDNHIDPALGDTPLTKLSAKQVQEYYTTTQREANLS 133 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 ++ + + + AVRQE + ++P VE P+ + + +G Sbjct: 134 SNTMRRHHDLLSSALRSAVRQEMIPVSPMNRVEPPRP-RPKETSFYDNLELKQLYQLIQG 192 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN------------IFSIKTQKTGTIITVEL 237 L + G+R + C ++ + QK Sbjct: 193 KPLELPVKLAGSLGMRREEICGLKWDNVDLQRRLVIIREARTAYGANIVQKETKNRASVR 252 Query: 238 PDGFMKLLA------------------MTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279 L + +++ ++ + S+ F + Sbjct: 253 TLYLADELCLLLEQEQSRQEALRCQDPDNFNPEGYVVLDHKQRPYSPNALSLAFTRFVRR 312 Query: 280 AGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADR 328 + + + HG+R ATI++ GA+ ++ G T YT DR Sbjct: 313 NNLPRLTFHGLRHTFATIASCQGASLFDIGKALGHSTPSTTGRIYTHLVDR 363 >gi|254704264|ref|ZP_05166092.1| Phage integrase [Brucella suis bv. 3 str. 686] gi|261754933|ref|ZP_05998642.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686] gi|261744686|gb|EEY32612.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686] Length = 341 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 58/333 (17%), Positives = 113/333 (33%), Gaps = 25/333 (7%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 + G+ YY G +R P + F+ + A + + + Sbjct: 11 KVNAKGRTYYYA-WRGGPALR-GEPGSAEFMASLQEA---------NDSRVIPDASKFRA 59 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVESRKH 128 +I+ Y+ S + LA +++ ++ + D+I +K GD + IR Sbjct: 60 VITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSIAQFDLPQKIRPVIRKWRGEFAD 119 Query: 129 TPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 P +A + + + +AV ++ NPC +++ + WT +D+ + K+ Sbjct: 120 KPRTADYGMQVLSRVLSYAVDPLGKISQNPCEGIKQLYKNDRAAIIWTDQDIARLKTKC- 178 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLL 245 + A + ++GLR D R H+ +N + + + L LL Sbjct: 179 -SPEVAWAVDLAAHAGLRAGDLLRLSWSHITDNAIILPTGKSRHTKEAVIPLYAELRALL 237 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGA 302 P N K F F +A + + H R +AT AG Sbjct: 238 QTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLHFHDFRGTAATKFYIAGL 297 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 + + GW+ + R I+ Sbjct: 298 SERVIAEIMGWEEETVRNIIRRYVSR-TAAIEA 329 >gi|255262389|ref|ZP_05341731.1| tyrosine recombinase XerD [Thalassiobium sp. R2A62] gi|255104724|gb|EET47398.1| tyrosine recombinase XerD [Thalassiobium sp. R2A62] Length = 310 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 43/289 (14%), Positives = 92/289 (31%), Gaps = 33/289 (11%) Query: 74 LISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSG---VESRK 127 IS + ++ A N+++++ + + T I + +++ Sbjct: 8 WISSFLEAQAAELDAARNTQLAYARDLTDVADWLKSKGLHFSSATQGDIENYLIFCDAQG 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S+ + L++++ L+++A + + A NP + ++ P + + + E++ + Sbjct: 68 LAKSTRARRLSAVKQLYRFAFEESWRADNPAIQIKGPGKDKRLPKTLSVEEVDRLLEASR 127 Query: 188 -------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD 239 + + E L +G+R ++ V + + + K V L Sbjct: 128 TSAKSVDDRLRNTCLMELLYATGMRVTELVSLPVSATRGDPRMLLIRGKGDKERMVPLSP 187 Query: 240 GFMKLLAMTPIGK----------------ETFFINNDKQKMNATQFSIWFKAKATKAGV- 282 LA F + +F + K A GV Sbjct: 188 PARTALADWIKRWDALQDAAVKAGKPRARHLFPSRGKDGHLTRHRFYLMIKEFAVAGGVV 247 Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + H +R AT GA + G V E YT D Sbjct: 248 PSKVTPHTLRHAFATHLLANGADLRSIQTLLGHADVATTEIYTHVLDER 296 >gi|254450263|ref|ZP_05063700.1| phage integrase [Octadecabacter antarcticus 238] gi|198264669|gb|EDY88939.1| phage integrase [Octadecabacter antarcticus 238] Length = 315 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 45/274 (16%), Positives = 82/274 (29%), Gaps = 19/274 (6%) Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 +++ TT L + ++ ++ G T +R+ Sbjct: 22 KEEKTT--ALRQRMIEDMRIRAIGETTQKGHIRAIKHFATFLGRSP-DTATPDELRAYQL 78 Query: 125 SRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 T S+ + S+R+ F +E + + + E++ Sbjct: 79 HMTDTEVTTSTFNTRIVSLRLFFGVTCGREEMKRYMQFRRKP----RRLPVVLSVEEIGD 134 Query: 182 FKSFWS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELP 238 + G R A +GLR S+ C V + + + K G L Sbjct: 135 LLAAVPGPGLTYRAALGISYGAGLRASEVCHLKVVDIDSGRMLIHVDEGKNGKDRKAMLS 194 Query: 239 DGFMKLLAMTP----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292 G + LL F ++ Q + F + AG+NK + H +R Sbjct: 195 PGLLDLLREYWLEARPEGWLFPGKPKINPLSLRQLNRAFTSAKHMAGINKPATLHTLRHS 254 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA 326 AT +AG + G + YT A Sbjct: 255 FATHLLEAGTDVRVIQVLLGHSKLSTTARYTHVA 288 >gi|116049139|ref|YP_792059.1| putative bacteriophage integrase [Pseudomonas aeruginosa UCBPP-PA14] gi|37596415|gb|AAQ94690.1| PA0728 [Pseudomonas phage Pf1] gi|115584360|gb|ABJ10375.1| putative bacteriophage integrase [Pseudomonas aeruginosa UCBPP-PA14] Length = 338 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 42/313 (13%), Positives = 91/313 (29%), Gaps = 18/313 (5%) Query: 19 GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78 G+ + G+R R + + + ++ N ++ L LI + Sbjct: 9 GRWLADVEPIKGKRFRKR-FKTKGEAQRFEAMVRTKHARQREWNPVQQDKRLLSELIERW 67 Query: 79 RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQ 135 ++ S ++ I + GD ++ TT + R P S Sbjct: 68 Y---ELHGHSITSGRRRKNLLLLIASRLGDPVGQRFTTADLVAFRKRELEEGALPRSINV 124 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG----SQ 191 + ++ +F R + L +P + + + + +D Sbjct: 125 RYSYLKTVFTELRRLGDIDYPNPLDRLKPLKPQQSVVSFLSKDQVAVLVSALRDYSTFPH 184 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251 L E L +G R S++ + +++ K+ + +V + L G Sbjct: 185 LALISEVCLATGARWSEAQGLTLPMVRDGSVVFSNTKSKRVRSVPISTDLQARLEKYFAG 244 Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATY 311 + F F+ K + H +R A+ G L Sbjct: 245 RNRF-------PSCREAFARMVKRCGIVLPRGQCTHVLRHTFASHFMMNGGNILALKEIL 297 Query: 312 GWKTVDQAETYTK 324 G +++ Y Sbjct: 298 GHSSLNMTMRYAH 310 >gi|90422054|ref|YP_530424.1| tyrosine recombinase XerD [Rhodopseudomonas palustris BisB18] gi|90104068|gb|ABD86105.1| tyrosine recombinase XerD subunit [Rhodopseudomonas palustris BisB18] Length = 320 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 42/297 (14%), Positives = 89/297 (29%), Gaps = 39/297 (13%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVES 125 LI + N+ ++ + G + + + ++ Sbjct: 9 ARLIELFLDMIAAEQGAGKNTLDAYRGDLTDLSDFLGHARSSFVAADTEVLRGYLAELDE 68 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 R + +S + L++ R LF++ + + A +P + PKR + + D+ + Sbjct: 69 RGYKSTSVARKLSAFRHLFRFLLTERIRADDPAAILSGPKRGRGLPKVLSIADVDRLLQH 128 Query: 186 WS--------------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-G 230 ++ E L +GLR S+ + + + I + Sbjct: 129 AKDLIAAPHANTQQRLRAARLYCLLEVLYATGLRVSELVSLPLSAARRDARMIVVRGKGN 188 Query: 231 TIITVELPDGFMKLLAMT---------------PIGKETFFINNDKQKMNATQFSIWFKA 275 V L + + +A K F + + F+ K Sbjct: 189 KERLVPLNESSKQAMAGYLAALDELRQEKAKNASASKWLFPSFGESGHLTRQHFARELKD 248 Query: 276 KATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 A AG++ S H +R A+ GA + G + + YT + Sbjct: 249 LAGAAGLSPRLVSPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEER 305 >gi|237739828|ref|ZP_04570309.1| phage integrase [Fusobacterium sp. 2_1_31] gi|229423436|gb|EEO38483.1| phage integrase [Fusobacterium sp. 2_1_31] Length = 352 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 55/349 (15%), Positives = 110/349 (31%), Gaps = 35/349 (10%) Query: 19 GKIIYYFRK----GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 G+ F G+ +RI Y K +++ + + Sbjct: 14 GRWNARFTIKLINGNSKRIYKRGFKSKKEALEY--------EKNMILDNSLGSNIQFRKI 65 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSS 132 + +Y + + +S ++ S F I +F +IT K I + PS+ Sbjct: 66 VDKYLEYKKMR-VKESSFLNLTSIFKNI-TFFDNFILSEITPKIISDFQNELIKTYKPST 123 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 ++R+LF W VR ++ NP VER K +T D Sbjct: 124 VKIININLRMLFTWCVRYRNLSNNPFDMVERLKIETSKKINIITVDEFNQIVEQVNNEDM 183 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------------ITVE 236 +L F+ L ++GLR ++ + + +I K T + Sbjct: 184 KLMFKLLFWTGLRIGEARALKIDDIDFENKTISVTKNYTKLHGKESLTSPKTKRSNRIIR 243 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSAT 295 + D ++ + ++ + T ++ FK K + H +R A+ Sbjct: 244 IDDKLVEDIKEYLDKALYIIDDDFIFRHQKTSYTAKFKKIVLKVLKKDLRIHDLRHSHAS 303 Query: 296 ISADAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLGIKNSRRISSV 342 + G + G + Y+ + I+ ++ V Sbjct: 304 FLINNGVDILLISQRLGHSNIAMTLNVYSHLYPSKENEAIELINKLKGV 352 >gi|209919029|ref|YP_002293113.1| phage integrase [Escherichia coli SE11] gi|209912288|dbj|BAG77362.1| phage integrase [Escherichia coli SE11] Length = 325 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 45/304 (14%), Positives = 91/304 (29%), Gaps = 18/304 (5%) Query: 28 GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87 G+RIR + Y + E+ + + L LI + K Sbjct: 19 RKGKRIR-KKFKTKSDAVLYERWVLAQQHNNEWKGNSIDRRP-LSVLIDLWWKYHGQLMK 76 Query: 88 A-VNSRISFESYFDQIIRKSGDFDYRKITTKH---IRSGVESRKHTPSSAIQFLTSMRVL 143 + N+ ++ D K+ T +R + PS+ + + ++ + Sbjct: 77 SGHNT----RLKLLRLSEAMDDPCVHKLNTTMLTELRVSRIEQGIQPSTINREIGALSAM 132 Query: 144 FK-WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202 F ++ NP ++ K + +K + Q +E RLA E LL + Sbjct: 133 FTALISSGHFLNDNPVQGLKGMKVNEREMGYLSKSECVQLLDALAENPDERLAVEILLST 192 Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262 G R + + + + + K TV + + + + ++ Sbjct: 193 GARWGEVAALEQRRVLHCRITFSKTKNSKNRTVPISESLFEKIKKRGGKLVFPTLD---- 248 Query: 263 KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 + K A ++ H +R A+ G L G + Y Sbjct: 249 ---YSLVRDVIKTVAPDVPDGQAVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIY 305 Query: 323 TKGA 326 A Sbjct: 306 AHLA 309 >gi|194335806|ref|YP_002017600.1| integrase family protein [Pelodictyon phaeoclathratiforme BU-1] gi|254799350|sp|B4SDZ2|XERC_PELPB RecName: Full=Tyrosine recombinase xerC gi|194308283|gb|ACF42983.1| integrase family protein [Pelodictyon phaeoclathratiforme BU-1] Length = 336 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 44/290 (15%), Positives = 90/290 (31%), Gaps = 49/290 (16%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD---------FDYRKITTKHIRSGVESRKHTP---SS 132 +L+ N+ I++ + Q FD ++TT +R + + S Sbjct: 31 KNLSPNTVIAYRTDLFQFFSFLAQHLGLADLSLFDPEQVTTVEVRLFMAALIERGVRQRS 90 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF---------- 182 + L S++ +++ ++ + ++ P+ T++ ++F Sbjct: 91 IARKLASVKSFYRYLQESGHIRNSLFSALATPQYPKRVPGFLTEQQTEKFFNELLPQSAQ 150 Query: 183 ---------KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTI 232 + R E L SGLR S+ V L +K T K Sbjct: 151 GFRKPEKNELDESFICERDRSILELLYSSGLRISELIGLKVGELDLERGYVKLTGKGRKQ 210 Query: 233 ITVELPDGFMKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGV 282 V + + L + FF + + + + T+ + Sbjct: 211 RIVPVGQQAVDALKKYFEVRRNFFRMKRTGDAGELLHVFVTKSGKKLYPMLVQRLTRKYL 270 Query: 283 -------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 K+ H +R AT ++GA + + G + E YT Sbjct: 271 TSVTDQKKKNPHLLRHTFATHLLNSGADLNSVSDMLGHSNLSTTEIYTHV 320 >gi|299535740|ref|ZP_07049061.1| phage integrase family site specific recombinase [Lysinibacillus fusiformis ZC1] gi|298728940|gb|EFI69494.1| phage integrase family site specific recombinase [Lysinibacillus fusiformis ZC1] Length = 376 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 42/349 (12%), Positives = 94/349 (26%), Gaps = 53/349 (15%) Query: 39 HESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESY 98 T A + + TL + + K L N+ ++ES Sbjct: 22 GAHTKAEAEAILRRKILEYENAGTVFKPQEITLHDYLDFWMKEYVDLKLEPNTYYNYEST 81 Query: 99 FD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT----SMRVLFKW------A 147 I G + + +T ++ + K A Q L+ + Sbjct: 82 IRNHIAPHLGKYKVKSLTPHVLQQFIN-LKTREGYARQTLSIIIGILSKALNHAVYPYKY 140 Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCS 207 +++ + + ++ K E ++ TKE+++ S E L F L+ GLR Sbjct: 141 IKENPMHYVELMKDKKRKPTREELKLQTKENLRLINSILDEEHPFYLPFHIGLHCGLRVG 200 Query: 208 DSCRAGVQHLQN---------------------NIFSIKTQKTGTIITVELPDGFMKLL- 245 + C +H+ + T+ + ++L Sbjct: 201 EVCGLEWKHINFEEMTLEVEQQLVGIKDENGKAQWQPRPPKSKAGYRTIPFGNTLAEMLK 260 Query: 246 ----------------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGV 289 + + + + + + K ++ + H + Sbjct: 261 RIKKAQIENRLKYGEFYQKDPEHDYVCKKENGEHCTPSVIKYNTRKISEKLNISFNDHSL 320 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSR 337 R AT + G + G E Y + ++ + Sbjct: 321 RHTHATTLIENGTPVKTVQKRLGHSRAAVTEDRYVHLTE--KMARDAAN 367 >gi|222087381|ref|YP_002545918.1| tyrosine site-specific integrase/recombinase protein [Agrobacterium radiobacter K84] gi|221724829|gb|ACM27985.1| tyrosine site-specific integrase/recombinase protein [Agrobacterium radiobacter K84] Length = 319 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 46/291 (15%), Positives = 91/291 (31%), Gaps = 36/291 (12%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVESRKH 128 + + + AVN+ S+E D + + R SG+ + Sbjct: 10 MEAFLEMMSAERGAAVNTLQSYERDLDDLHSFLSERSVRLTEAGSNDLGAYLSGLSRQGF 69 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 PSS + L++MR +K+ + +P ++ PK+ + E++ + + + Sbjct: 70 KPSSQARRLSAMRQFYKFLYAEGLRTDDPTGILDAPKKGRALPKTMGVEEVTRLLTQAEK 129 Query: 189 G-----------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVE 236 + + E L +G+R S+ + L + K V Sbjct: 130 EAAEESPDQLQRLRMLVLLELLYATGMRVSELVTLPAKVLDQEGRFLMIRGKGNKERLVP 189 Query: 237 LPDGFMKLLAMT---------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 L + L P F + + + F+ K A +AG Sbjct: 190 LSQSAIAALKTYGKLQTQVAANTKQPAPESAWLFPAASKQGYLPRQVFARDLKDLAIRAG 249 Query: 282 VN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + S H +R A+ GA + G + + YT + Sbjct: 250 LTPSLISPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEER 300 >gi|328545835|ref|YP_004305944.1| Site-specific recombinase, phage integrase family protein [Polymorphum gilvum SL003B-26A1] gi|326415575|gb|ADZ72638.1| Site-specific recombinase, phage integrase family protein [Polymorphum gilvum SL003B-26A1] Length = 316 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 36/294 (12%), Positives = 86/294 (29%), Gaps = 32/294 (10%) Query: 75 ISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSGVES 125 I + L+ + +++E Q +R G + R + R+ + Sbjct: 20 IGAWLDHLGDERRLSDKTLVAYERDVRQFLRFLTDHLGGTPGMAELRDLRPADFRAFLAR 79 Query: 126 RKHTPS---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ- 181 R+ + S + L +R + R+ V ++ P++ +P + D + Sbjct: 80 RRRAGAQSRSLARGLAGIRSFLGFLERRGEVNAAAAGAIRPPRQPRSLPKPVSAADARAI 139 Query: 182 ------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCR--AGVQHLQNNIFSIKTQKTGTII 233 ++ ++ L GLR +++ + K G Sbjct: 140 VSGELAMEAEPWIEARNAAVLTLLYGCGLRLAEALSLTGRTAPRRGTKTLTIRGKGGKER 199 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGVN--K 284 V + + + + +N + + + + Sbjct: 200 IVPVLPVVCEAVDAYLKLCPYTPEPDGPLFLGARGGPLNPRLVQLAMQKLRSALALPDSA 259 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338 + H +R AT G + G ++ + YT D RL ++ + Sbjct: 260 TPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQIYT-EVDTARL-LEAYDK 311 >gi|257426155|ref|ZP_05602571.1| phage integrase [Staphylococcus aureus subsp. aureus 55/2053] gi|257437048|ref|ZP_05613089.1| phage integrase [Staphylococcus aureus subsp. aureus M876] gi|257271063|gb|EEV03232.1| phage integrase [Staphylococcus aureus subsp. aureus 55/2053] gi|257283642|gb|EEV13768.1| phage integrase [Staphylococcus aureus subsp. aureus M876] Length = 349 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 47/337 (13%), Positives = 103/337 (30%), Gaps = 26/337 (7%) Query: 13 KERTR--HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP--RKKP 68 + +TR GK Y K G+R R A + K + S Sbjct: 8 RMKTRCYDGKKWQYEFKHEGKRYRKKGFRTK------REANSAGLDKLNELRSGFNIDNY 61 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVES-- 125 TL+ + K+ + N+ + + I + G + KI + + + Sbjct: 62 ITLEEYFENWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDYS 121 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER----PKRKTEGIRPWTKEDMQQ 181 ++H + + ++R A+ + NP V P + + E Sbjct: 122 KEHAKETIRKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEIL 181 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-------KTGTIIT 234 + ++ LA ++ +G R S + ++H+ +I I Sbjct: 182 KDHVRKKRTRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTNTSPRYISIA 241 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293 M +++ I + + +N + K+ + ++H +R Sbjct: 242 KSDMKHIMDVISTFAISYDGYIFKEAGSIINLHAINNALKSACRVNNIPIITSHALRHTH 301 Query: 294 ATISADAGATAHELMATYGWKTVD-QAETYTKGADRI 329 + G + H + G K + Y+ + Sbjct: 302 CSYLLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEK 338 >gi|30019424|ref|NP_831055.1| DNA integration/recombination/invertion protein [Bacillus cereus ATCC 14579] gi|229126686|ref|ZP_04255698.1| DNA integration/recombination/invertion protein [Bacillus cereus BDRD-Cer4] gi|29894968|gb|AAP08256.1| DNA integration/recombination/invertion protein [Bacillus cereus ATCC 14579] gi|228656626|gb|EEL12452.1| DNA integration/recombination/invertion protein [Bacillus cereus BDRD-Cer4] Length = 370 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 51/370 (13%), Positives = 112/370 (30%), Gaps = 42/370 (11%) Query: 12 TKERTRHGKIIYYFRKGHGRRIRLPYPHES---TFIPAYMSALTGSTPKREYINSPRKKP 68 K+ + GK Y + T +ALT + Sbjct: 5 VKKDKKTGKYFYIVDIDIDPLTGKRKQKKKRGFTSKKEAENALTNLLSEVHTGTYVEPSK 64 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK 127 + + + + S+ + + + Y + +II G+ K+T+ H+++ V S + Sbjct: 65 LSYGEYLESWFNTKR-HSVGIQTAKVLKGYLNSRIIPSLGNIKLAKLTSLHMQNYVNSLR 123 Query: 128 H---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + + + +R + A+ E + N + PK E + W ++++Q F Sbjct: 124 DEGLKRGTIEKIIKVIRNSLEHAIDLELITKNVAAKTKLPKADKEELTVWNEQEVQLFLK 183 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------------ 232 +G + + F L +G+R + + + + +T + Sbjct: 184 AAQDG-RYSIVFHMALVTGMRQGELLGLRWKDVDLEKGHLIISQTLSHDGKTFLVGGKTK 242 Query: 233 ---ITVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKA 275 + LP + L + +N A Sbjct: 243 SSLRKILLPASTIAKLKKHRAVILKEKLSQGEEYQDNDLVMCTPSGTPINPANVRRSLNA 302 Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGI 333 KA V K H +R AT+ G + G + +TY+ + Sbjct: 303 LIQKAAVPKIRFHDLRHTHATLLLAKGVNVKVISERLGHSNIKITLDTYSHVLPT--MQE 360 Query: 334 KNSRRISSVV 343 ++ ++ Sbjct: 361 DAVNKMEEIL 370 >gi|66395739|ref|YP_240105.1| ORF010 [Staphylococcus phage 37] gi|62636162|gb|AAX91273.1| ORF010 [Staphylococcus phage 37] Length = 342 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 34/326 (10%), Positives = 107/326 (32%), Gaps = 20/326 (6%) Query: 18 HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77 GK Y F+ + +R R A + + ++ + TL +++ Sbjct: 8 KGKWQYEFKYNN-KRYRKKGFRTKK--EAEYAGIEKLNELQQGYSP--DNTLTLHQYLTQ 62 Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVESRKHTPSSA--I 134 + + S++ ++ ++S + D K+T +++ + + T S Sbjct: 63 WVITYKRNSVSKSTYGGYKSNLKILKSFKIADIPIAKLTRLDVQNFLTAYTETRSQVTGR 122 Query: 135 QFLTSMR-----VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + + ++ ++ +++ V + PK++T+ + + Sbjct: 123 KMRSLLKTSLDDAVYDGLIKRNPVYRITFKAGHEPKKETDKFISIEEYKRLKN-KLMQSN 181 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT----VELPDGFMKLL 245 + L ++ +G R S + ++ +++ + + + E K++ Sbjct: 182 KRMDLILFIMICTGCRVSGAINMKSSYIGKDLYIDEQKTDSSPRYVDVAKEDMQHIRKVI 241 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATA 304 + + + + + + + + + K + H +R + G + Sbjct: 242 STWAVSMDGYIFKDRGILPRVKRVNARLGELCEELDIKKITTHALRHTHCSYLLSQGVSI 301 Query: 305 HELMATYGWKTVD-QAETYTKGADRI 329 + G K + E Y+ + Sbjct: 302 QYISKRLGHKNMRITLEVYSHLLEEQ 327 >gi|302343156|ref|YP_003807685.1| integrase family protein [Desulfarculus baarsii DSM 2075] gi|301639769|gb|ADK85091.1| integrase family protein [Desulfarculus baarsii DSM 2075] Length = 409 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 43/366 (11%), Positives = 111/366 (30%), Gaps = 36/366 (9%) Query: 11 VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP-T 69 V +E+ + + F G R + + ++ + +P K Sbjct: 4 VVREKDSGSGVWWVFVNEDGHRTSRKVGSKRLALEVAEKIKAKLVLRKCGLVAPEKVKLP 63 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRS---GVES 125 + + + + + + + + K G +I+ +R G+ S Sbjct: 64 LFRDYAQIWLEGFIKHTRRPATYERYRDVLKKYVTPKLGSLPLDQISRGQVRDLLLGIYS 123 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP----KRKTEGIRPWTKEDMQQ 181 + + +S ++ + +AV +E + NP + + + + + P T E++ Sbjct: 124 KGLSKASVCIVRDTISGVMGFAVDEELIPSNPVIGITKRLNLGRDDGNTVEPMTHEEVAL 183 Query: 182 FKSFWSEGSQPRLAFEFLLY-SGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------- 231 F ++ R F + +G+R + + + I +++ Sbjct: 184 FLETCAKHYPERYPFFLTAFRTGMRLGELLALQWGDIDWHGRFIVVRRSFKGGYTTSTKT 243 Query: 232 --IITVELPDGFMKLLAMTPIGKETF------------FINNDKQKMNATQFSIWFKAKA 277 V++ + + L ++ + + FK Sbjct: 244 GKARRVDMSNQLFETLCALQTKRKREAVGAGRGELAPLIFHKGGLPIAQNSARNHFKRIL 303 Query: 278 TKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGA-DRIRLGIK 334 KAG+ H +R A++ AG + + G ++ + Y R + Sbjct: 304 QKAGLREMRVHDIRHTFASLLLSAGQSPVYVKEQLGHSSISMTVDIYGHLIPSSNRDAVN 363 Query: 335 NSRRIS 340 + Sbjct: 364 QLDEAA 369 >gi|217975610|ref|YP_002360280.1| integrase family protein [Shewanella baltica OS223] gi|217500805|gb|ACK48857.1| integrase family protein [Shewanella baltica OS223] Length = 451 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 51/313 (16%), Positives = 111/313 (35%), Gaps = 15/313 (4%) Query: 27 KGHGRRIRLPYPHESTFIPAYMSALTGSTP--KREYINSPRKKPTTLKWLISEYRKSAHW 84 + R R+ P + + A TG + E+ + + K + Sbjct: 49 IDNRTRTRILAPVSALTVKAAREKATGQLQAWREEHTQPSMSASPRFDVFVEQTWKPMIF 108 Query: 85 GSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTP-SSAIQFLTSMRV 142 +++ S +++ G + I K +++ + T +A + L +++ Sbjct: 109 EHWKPSTKRSVLPALNRRLLAHFGRYPLHMINHKMVQAWFDEISKTRKGAANRNLDTLQS 168 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-----FKSFWSEGSQPRLAFE 197 +FK A+RQ + NPC+ + + ++ R + +MQ+ + GS + A Sbjct: 169 VFKLALRQGHCLTNPCIGIRQ-NKRRVLNRFLSVAEMQRLSVALDECEKVGGSIAQCADI 227 Query: 198 FLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255 L +G R S+ ++++ N + KTG + + K Sbjct: 228 LRLLLLTGCRLSEITFLKGEYVRGNELHLPDSKTGAKVLYIGQAAVD--ILSRYHCKANT 285 Query: 256 FINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWK 314 + KQ + + + + G+ + H +R A+ + G + + + G K Sbjct: 286 ELFPMKQGASTSLVQSLWLRLRKQIGIEDVRLHDLRHTFASYAVMDGCSIPMVASLLGHK 345 Query: 315 TVDQAETYTKGAD 327 V YT D Sbjct: 346 KVTMTLRYTHVGD 358 >gi|304386123|ref|ZP_07368463.1| site-specific recombinase [Pediococcus acidilactici DSM 20284] gi|304327850|gb|EFL95076.1| site-specific recombinase [Pediococcus acidilactici DSM 20284] Length = 396 Score = 112 bits (281), Expect = 5e-23, Method: Composition-based stats. Identities = 60/384 (15%), Positives = 119/384 (30%), Gaps = 57/384 (14%) Query: 14 ERTRHGKIIYYFR--------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65 T+ GKI Y F+ G + R +S L KR R Sbjct: 19 YTTKTGKIRYEFQVYAGVDSLTGRQKTTRRRGFKTRKEASIVLSRLELEIEKRGLQEDER 78 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124 + + + +E+ + + ++ + ++ GD ++T + V Sbjct: 79 RF---FRDVCAEWMEQYRLT-VRESTLEKTQRIIRVHVLPAFGDMLIDQVTPNVCQRVVN 134 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 S ++L ++F +A+R EYV NPC V P+ + + + + Sbjct: 135 KWFLEAKSYKKWLNYASMIFDYALRAEYVGRNPCTLVTMPRVQEQAGEKLENFWTRDELN 194 Query: 185 FWS------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------- 231 + + F L YSG+R + + + +++ KT T Sbjct: 195 TFFDYVTPERDVEQFTMFRVLAYSGIRKGELLALTWKDINFEDNTLRVNKTLTQGLGGKL 254 Query: 232 ----------IITVELPDGFMKLLAMTPIGKETFFINN---------------DKQKMNA 266 T++L D M+ L + F+ + Sbjct: 255 IVQPPKSRAGRRTIDLDDSTMRYLRQWKGVQRETFLGMGFNTNNVDQLVFASNRNHFRSM 314 Query: 267 TQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWK---TVDQAETY 322 + W G+ S HG R A++ +G E G + + Y Sbjct: 315 NTPTKWLNKAIKATGLKHISIHGFRHTHASLLYQSGVGLKETQQRLGHSRADSSVTLDVY 374 Query: 323 TKGADRIRLGIKNSRRISSVVDSD 346 T ++ + +R + V++ Sbjct: 375 THTTEQQNVA--ALQRFENYVEAK 396 >gi|265983027|ref|ZP_06095762.1| tyrosine recombinase xerD [Brucella sp. 83/13] gi|264661619|gb|EEZ31880.1| tyrosine recombinase xerD [Brucella sp. 83/13] Length = 309 Score = 112 bits (281), Expect = 5e-23, Method: Composition-based stats. Identities = 39/289 (13%), Positives = 86/289 (29%), Gaps = 33/289 (11%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR---K 127 I + + A N+ S+ + + + + T HIR +++ Sbjct: 8 AIENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKGVNLAEAETGHIRMTLDTMAAQG 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185 P+S + L+++R F++ + + +P ++ PK++ + + E++ + Sbjct: 68 FAPTSQARRLSALRQFFRFLYSEGFRQDDPTGILDAPKKQKPLPKIMSVENVGKLLDRAA 127 Query: 186 -----------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTII 233 + + E L +GLR S+ V + + + K Sbjct: 128 LEANEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKGSKDR 187 Query: 234 TVELPDGFMKLLAMTP------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---- 283 V L + L G + + F + Sbjct: 188 MVPLSRKAREALQKFLTLRDSLPGSDDNPWLFPAFSESGHLARQVFARELKGLAARAGLA 247 Query: 284 ---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 S H +R A+ GA + G + + YT + Sbjct: 248 ASSVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEER 296 >gi|332177003|gb|AEE12693.1| Tyrosine recombinase xerC [Porphyromonas asaccharolytica DSM 20707] Length = 407 Score = 112 bits (281), Expect = 5e-23, Method: Composition-based stats. Identities = 45/304 (14%), Positives = 99/304 (32%), Gaps = 30/304 (9%) Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFE--------SYFDQIIRKSGDFDYR-KITTKH 118 TL+ I Y + + + + ++ + + D + Sbjct: 11 EQTLEAFIE-YLRLE--RNASPLTLNTYRPAITSYMECALELASDEWQPSDADRDLVRNW 67 Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 I ++ + T ++ + L++++ +K+ + V NP + PKR+ T+ Sbjct: 68 IMQQMDD-ELTSTTVNKNLSAVKSFYKYLQLRGVVDNNPTRYLRGPKREHTLPSFLTQAQ 126 Query: 179 MQQFKSFWSEGS------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT- 231 +++ + RL E + +GLR ++ Q + S++ G Sbjct: 127 IEEALETIPTDPEDFLAVRNRLIIETIYQTGLRRAEVASLETQQVDLASMSLRVVGKGRK 186 Query: 232 -------IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA-GVN 283 E ++ L FF+ + ++ G+ Sbjct: 187 ERIVPFGEALKEQMKAYLTLKEQKVGQSRYFFVTLKCRPLSGADVYQVVHKALDIVPGLP 246 Query: 284 KS-AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISS 341 + AH +R AT +AGA + G ++ YT ++++ R S Sbjct: 247 RRGAHTLRHSFATEMLNAGAPITSIKELLGHSNLETTTRYTHTSFEQLKQLYHAHPRAQS 306 Query: 342 VVDS 345 V S Sbjct: 307 QVPS 310 >gi|325509244|gb|ADZ20880.1| site-specific recombinase, phage integrase family [Clostridium acetobutylicum EA 2018] Length = 328 Score = 112 bits (281), Expect = 5e-23, Method: Composition-based stats. Identities = 48/313 (15%), Positives = 99/313 (31%), Gaps = 52/313 (16%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRK------------SGDFDYRKITTKHI------ 119 Y ++ + + +++ R D I + + Sbjct: 23 YLRTIRAK--SERTIYNYKIDLILFFRFLKLYRGLSKDADFEDIVINDIDSSFLDSITLE 80 Query: 120 -----RSGVESRKHTPSSAI-QFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIR 172 S E ++ S A + + ++R FK+ + + + NP L +E P Sbjct: 81 DLFAFLSFTEEFRNNGSYARARKIAALRSFFKYISGKAKIIKENPTLELESPSLPKRNPI 140 Query: 173 PWTKEDMQQFKSFW--SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230 T E+ Q + + L GLR S+ + ++ + + K Sbjct: 141 YLTLEESQALLNSIDGPFKERDYCIITLFLNCGLRLSELVSIDISKIKGDTLT-ILGKGN 199 Query: 231 TIITVELPDGFMKLLAMTPIGKETF------------FINNDKQKMNATQFSIWFKAKAT 278 T+ L + +K + + FI+ ++N + K A Sbjct: 200 KERTIYLNEMCLKAIEDYIPVRNQKASSIKIEDKDALFISRKLTRINQRTIELMVKKYAL 259 Query: 279 KAGVNK---SAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334 KA ++ + H +R +AT+ G L G ++V + YT D + Sbjct: 260 KANLDYEKLTPHKLRHTAATLMYKYGNVDIRSLQQILGHESVSTTQIYTHIDD------E 313 Query: 335 NSRRISSVVDSDD 347 N R+ ++ Sbjct: 314 NLRKAVKSNPLNN 326 >gi|134045984|ref|YP_001097470.1| phage integrase family protein [Methanococcus maripaludis C5] gi|132663609|gb|ABO35255.1| phage integrase family protein [Methanococcus maripaludis C5] Length = 275 Score = 112 bits (281), Expect = 5e-23, Method: Composition-based stats. Identities = 37/264 (14%), Positives = 80/264 (30%), Gaps = 16/264 (6%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIRSGVESRKHTP 130 + L+ Y K L+ + ++++S + D + +T + I E + + Sbjct: 6 RELVERYLKFC--SGLSETTLVNYKSTMKIFLNYYDDSLSFENLTIEDIIEFFEVYEASR 63 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 ++ I + S+ ++WA + +Y+ NP S + + R + + Sbjct: 64 NTKIYRIRSLNRFYEWANKHKYITGNPVRSFLNTLKPDKKERDYLTQKQSDDLLRSIIDV 123 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAMT 248 + F + +G+R S+ + + N I+ K V L Sbjct: 124 NFYIFTMFFIKTGVRVSEFQNILLDDVDFNEQTIFIRGGKGRKDRFVFFDLDMGINLKRW 183 Query: 249 PIGKETFFINNDKQKMNATQ-----------FSIWFKAKATKAGVNKSAHGVRKFSATIS 297 ++ +N + K + H +R AT Sbjct: 184 LRERDILKPKAPNLFLNRRGKAIGKSSITHYINYLNDVYGKKVNKRITPHILRHTFATTC 243 Query: 298 ADAGATAHELMATYGWKTVDQAET 321 D G L G + + Sbjct: 244 VDKGMDLRTLQDILGHEDIKTTSI 267 >gi|42520949|ref|NP_966864.1| phage integrase family site specific recombinase [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410690|gb|AAS14798.1| site-specific recombinase, phage integrase family [Wolbachia endosymbiont of Drosophila melanogaster] Length = 328 Score = 112 bits (281), Expect = 5e-23, Method: Composition-based stats. Identities = 45/307 (14%), Positives = 95/307 (30%), Gaps = 45/307 (14%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSG----VESR 126 I+ Y + S A N+ S+ S Q + +I+ + Sbjct: 14 YITYYIDALASERSAAQNTLESYRSDLHQFEEFLLESGTTLVGVNKTNIKDYVKSLCTQK 73 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV----ERPKRKTEGIRPWTKEDMQQF 182 K+ SS + +++M+ +K + NP + + PK + + E++ Sbjct: 74 KYKSSSISRKISAMKNFYKCLFNNGIIDFNPAPANDAELKNPKVSRPLPKYLSVEEIFLL 133 Query: 183 KSFWSEG----------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-------NIFSIK 225 + + + L SG+R S+ + + + + I Sbjct: 134 IDTVRKSASESNKEISSKRLCAILDILYSSGMRVSELISMKLCEVSHLINSNNKECYIII 193 Query: 226 TQKTGTIITVELPDGFMKLLAMT-----------PIGKETFFINNDKQKMNATQFSIWFK 274 K+G + + ++ L F + + + + K Sbjct: 194 KGKSGRERQILFNEQALQSLRNYLSVRDNLISKEKESDWLFPGDKPNKPITRQRVGQLMK 253 Query: 275 AKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI-- 329 A K ++ S H VR AT ++GA + G + + YT A+ Sbjct: 254 ELARKCNIDENKISPHVVRHSFATHLLNSGANIVLIQKVLGHTNLSTTQIYTHIANEKLK 313 Query: 330 -RLGIKN 335 +L + Sbjct: 314 DKLADSH 320 >gi|289627096|ref|ZP_06460050.1| phage integrase family protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330868191|gb|EGH02900.1| phage integrase family protein [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 404 Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats. Identities = 54/358 (15%), Positives = 104/358 (29%), Gaps = 27/358 (7%) Query: 7 LPPFVTKERTRHGKI----IYYFRKGHGRRIRLPYPHESTFIPAY-----MSALTGSTPK 57 L P + T G+ Y G R+ L E T A A Sbjct: 27 LVPGFLCKITPAGRKVFMLQYRTNAGERRKPTLGLFGELTVEQARSLAQEWLAQVRLGGD 86 Query: 58 REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITT 116 + + T+ L ++ + +++ +++ D+ I+ G + + Sbjct: 87 PSADKAIARSAPTVADLCKKFMEDHSKQRNKPSTQRGYQAVIDRCIVPMLGRMKVQDVKR 146 Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + S ++ H P+ A + + MR +F A Y + P Sbjct: 147 PDVASAMKKMVHKPAEANRTFSVMRKMFNLAEVWGYRSDGTNPCRHVPMYPNGKATHLIS 206 Query: 177 EDMQQFKSFW----------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226 ++ + + + LA R S+ + + Sbjct: 207 DEEMGKLFRYLAFLETDGLGQDHAILPLAIRLQFEFAGRRSEIVALQWDWVDLENRRVVW 266 Query: 227 QKTGTIITVELPDGFMKLL-----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 + T + L N+ + M ++ + +AG Sbjct: 267 PDSKTGCMSKPLSEEGHRLLSTAPRKDGCPYVFPSPNHPGKHMTTGEYYGGWTRILKRAG 326 Query: 282 V-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSR 337 V + HG+R SAT A++G MA KTV Y D+ +R + Sbjct: 327 VTHVGTHGIRHRSATDIANSGIPVKVGMALTAHKTVAMFMRYVHTEDKPVREAAELVA 384 >gi|253571052|ref|ZP_04848460.1| integrase [Bacteroides sp. 1_1_6] gi|251840001|gb|EES68084.1| integrase [Bacteroides sp. 1_1_6] Length = 381 Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats. Identities = 52/373 (13%), Positives = 113/373 (30%), Gaps = 36/373 (9%) Query: 4 SLRLPPFVTKERTRHGKIIYYFR-KGHGRRIR-------LPYPHE------STFIPAYMS 49 ++ P + + +G Y G+R +P T + A + Sbjct: 9 KVKEPIRLRMKSLSNGSKSLYLDIYRDGKRTYEYLKMYIIPETDSNSRRQNQTTMDAANA 68 Query: 50 ALTGSTPKREYINSP---RKKPTTLKWLISEYRKSAHWGSLAVNSR--------ISFESY 98 + + + RK T L + Y ++ S+ + Sbjct: 69 IKSKRIIELTSNEAGIVFRKDKTFLLDWMQVYMEAQESAGKKDGSQIKIAMRILKDYAGE 128 Query: 99 FDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158 + + GDF IT + + + + + ++ AVR++ + NP Sbjct: 129 MVTLDQIDGDFCRGYITYLLTEYHPKGKDISNYTLHNYYRALNGALNSAVRKKKMKANPF 188 Query: 159 ------LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212 + +P+ + + + E + A+ F + GLR SD + Sbjct: 189 NELEKSEKIRKPESMRSYMTIEEVQALIDTPMPHEEYEIVKCAYLFSCFCGLRISDIIKL 248 Query: 213 GVQHLQNNIFSIKTQKTGTIITVELPDG-FMKLLAMTPIGKETFFINNDKQKMNATQFSI 271 + + + + + + L P +N +A + Sbjct: 249 KWNDVFVDRGQYRLAVSMKKTKEPIYLPLSPEALKWMPERGGKSSEDNVFDLPSANTIRM 308 Query: 272 WFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 K A AG++K H R AT+ GA + + G V + Y K ++ Sbjct: 309 QLKPWAKAAGISKRFSYHTSRHTFATMMLTLGADLYTVSKLLGHADVKMTQVYAKIINKK 368 Query: 330 RLGIKNSRRISSV 342 + + ++ + Sbjct: 369 K--DEAVNLVNGL 379 >gi|71903698|ref|YP_280501.1| DNA integration/recombination/invertion protein [Streptococcus phage 6180.1] gi|71802793|gb|AAX72146.1| DNA integration/recombination/invertion protein [Streptococcus phage 6180.1] Length = 374 Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats. Identities = 48/345 (13%), Positives = 101/345 (29%), Gaps = 33/345 (9%) Query: 11 VTKERTRHGKIIY----YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 + + +G+ Y Y +G+R + T +A + ++ P+ Sbjct: 15 IKSYKKENGETAYKFLLYAGYVNGKRKYIRREGFKT----KQAARETLISLQAELDKPKS 70 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 T L ++ + + I+ K I I+ E Sbjct: 71 -SMTFGVLTKQWLNEYEKTVQGSTYLKTERNINKHILPKLDKVKIGDINPLLIQRLTEEW 129 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-----IRPWTKEDMQQ 181 + + L +R + AVR Y+ NP L + PK K + + Sbjct: 130 CNDLKYGGKILGLVRNILNLAVRYGYINNNPALPITPPKIKRKRKMNNNFYTLDQLKQFL 189 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--------------FSIKTQ 227 ++ + F L ++G+R + L N T+ Sbjct: 190 ELVEKTDNIEKIALFRLLAFTGIRKGELLALTWDDLNGNTLSINKAVTRTQVGLEIDVTK 249 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ---KMNATQFSIWFKAKATKAGVNK 284 + + L D +++L T + + M + W + + Sbjct: 250 TKSSDRLISLDDETLEILQELHETFPTSTLMFQSESGGIMTPSLPRKWLLQIIKGTDLPQ 309 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGAD 327 + HG R A++ ++G + ++ G + YT Sbjct: 310 ITIHGFRHTHASLLFESGLSLKQVQHRLGHGDLQTTMNVYTHITQ 354 >gi|306843458|ref|ZP_07476059.1| tyrosine recombinase XerD [Brucella sp. BO1] gi|306276149|gb|EFM57849.1| tyrosine recombinase XerD [Brucella sp. BO1] Length = 307 Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats. Identities = 39/289 (13%), Positives = 86/289 (29%), Gaps = 33/289 (11%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR---K 127 I + + A N+ S+ + + + + T HIR +++ Sbjct: 6 AIENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKGVNLAEAETGHIRMTLDTMAAQG 65 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185 P+S + L+++R F++ + + +P ++ PK++ + + E++ + Sbjct: 66 FAPTSQARRLSALRQFFRFLYSEGFRQDDPTGILDAPKKQKPLPKIMSVENVGKLLDRAA 125 Query: 186 -----------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTII 233 + + E L +GLR S+ V + + + K Sbjct: 126 LEADEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKGSKDR 185 Query: 234 TVELPDGFMKLLAMTP------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---- 283 V L + L G + + F + Sbjct: 186 MVPLSRKAREALQKFLTLRDSLPGSDDNPWLFPAFSESGHLARQVFARELKGLAARAGLA 245 Query: 284 ---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 S H +R A+ GA + G + + YT + Sbjct: 246 ASSVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEER 294 >gi|302382463|ref|YP_003818286.1| integrase [Brevundimonas subvibrioides ATCC 15264] gi|302193091|gb|ADL00663.1| integrase family protein [Brevundimonas subvibrioides ATCC 15264] Length = 402 Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats. Identities = 72/380 (18%), Positives = 123/380 (32%), Gaps = 41/380 (10%) Query: 3 PSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYP-HESTFIPAYMSALTGSTPKREYI 61 P PFV + R +G + YFR+G R L P + L + I Sbjct: 10 PETVRVPFVQRVRKPNGDVHLYFRRGAFREGPLKSPDGSPELKAEIDAILERVRKASDAI 69 Query: 62 NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121 P T+ ++ Y KSA + SLA ++ ++ Y D++I +GD ++T + Sbjct: 70 ARP--AAGTVGGMLKAYNKSAEFLSLARITQRGYQDYIDELIADTGDLLLSEVTRSWVIG 127 Query: 122 GVESRKHTPS-SAIQFLTSMRVLFKWAVRQEYVAI------NPCLSVERPKRKTEGIRPW 174 ++ +A + + ++ A+ + + V RP E W Sbjct: 128 MRDAWALRGHNAANKRMQVLKNALMPAIEDDTDQRIQGDPFHKVRKVRRPHDAGEAHPAW 187 Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLL--YSGLRCSDSC---------RAGVQHLQNNIFS 223 +++ QP LA L Y G R + Sbjct: 188 ELAEVEIAIEEAIRRDQPGLARAIALGRYGGFRRGTIVSIPLNARTLGRDGRGEPETRLV 247 Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG-- 281 T K + ++A TP T N + QF + + Sbjct: 248 WITSKRQVLSDKREDARLAAVIARTPNRALTIAYNKRGDPFSVRQFDQALERLLDRLAAD 307 Query: 282 ------------------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + HG+R A+AGA+ E+MA + A+ Y Sbjct: 308 GKIRATIKRTSDGRDVVVCPLTIHGLRHARGVELAEAGASDAEIMAQLEHASDAAAKIYR 367 Query: 324 KGADRIRLGIKNSRRISSVV 343 + A R ++ RI +VV Sbjct: 368 RQAQRRKMADAGQDRIDNVV 387 >gi|308455404|ref|XP_003090242.1| hypothetical protein CRE_23788 [Caenorhabditis remanei] gi|308265127|gb|EFP09080.1| hypothetical protein CRE_23788 [Caenorhabditis remanei] Length = 319 Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats. Identities = 40/310 (12%), Positives = 89/310 (28%), Gaps = 47/310 (15%) Query: 71 LKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSG--------DFDYRKITTKHIRS 121 L I + + + + + ++ + + D ++ + +R Sbjct: 3 LGTAIDGFLSAVEFEYGYSPQTVRAYRRDLLSLSEYLEASAPDSGPESDVSELGLETLRD 62 Query: 122 GVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + SR+ S+ + + +++ KW + VA NP + PK + R + + Sbjct: 63 WLWSRQEQGLAQSTLARNVATLKSFGKWLEQHRLVAGNPASRLRTPKAPSALPRVLSDDQ 122 Query: 179 MQQFKSF--------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230 + + + R E L + LR S+ C + L +++ G Sbjct: 123 ISRILDRAESLARGGDPIAVRDRALLELLYATALRVSEVCGLDLSGLDRIQRTVRVVGKG 182 Query: 231 -TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF-------------------- 269 V L + +N ++ Sbjct: 183 AKERVVPFGAPAALALEEYLSSARSELMNVATDAASSAGLVRESATTAVFLSASGSRIQA 242 Query: 270 SIWFKAKATKAGV-----NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 ++ A + H +R +AT + GA + G ++ + YT Sbjct: 243 HQIYRLVARSLEQEPGSGPRGPHTLRHTAATHLLNGGADLRVVQEMLGHSSLASTQVYTH 302 Query: 325 GADRIRLGIK 334 RL Sbjct: 303 -VSTERLAQS 311 >gi|261217851|ref|ZP_05932132.1| tyrosine recombinase xerD [Brucella ceti M13/05/1] gi|261321299|ref|ZP_05960496.1| tyrosine recombinase xerD [Brucella ceti M644/93/1] gi|260922940|gb|EEX89508.1| tyrosine recombinase xerD [Brucella ceti M13/05/1] gi|261293989|gb|EEX97485.1| tyrosine recombinase xerD [Brucella ceti M644/93/1] Length = 309 Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 84/289 (29%), Gaps = 33/289 (11%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR---K 127 I + + A N+ S+ + + + + T HIR +++ Sbjct: 8 AIENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKGVNLAEAETGHIRMTLDTMAAQG 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185 P+S + L+++R F++ + + +P ++ PK++ + + E++ + Sbjct: 68 FAPTSQARRLSALRQFFRFLYSEGFRQDDPTGFLDAPKKQKPLPKIMSVENVGKLLDRAA 127 Query: 186 -----------WSEGSQPRLAFEFLLYSGLRCSDSC-------RAGVQHLQNNIFSIKTQ 227 + + E L +GLR S+ R + L K + Sbjct: 128 LEANEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKGSKDR 187 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---- 283 L + G + + F + Sbjct: 188 MVPLSRKARDALQKFLTLRDSLPGSDDNPWLFPAFSESGHLARQVFARELKGLAARAGLA 247 Query: 284 ---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 S H +R A+ GA + G + + YT + Sbjct: 248 ASSVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEER 296 >gi|257066445|ref|YP_003152701.1| site-specific tyrosine recombinase XerC [Anaerococcus prevotii DSM 20548] gi|256798325|gb|ACV28980.1| integrase family protein [Anaerococcus prevotii DSM 20548] Length = 329 Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats. Identities = 39/306 (12%), Positives = 93/306 (30%), Gaps = 52/306 (16%) Query: 74 LISEYRKSAH-WGSLAVNSRISFESYF-----------------DQIIRKSGDFDYRKI- 114 +I++Y L+ N+ ++ + + +I Sbjct: 9 IITDYLNYLKSIRGLSSNTIKEYQYDLMLMIRYMIIRRIYYGDEESFNDDFKNIKINRIV 68 Query: 115 ------------TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSV 161 + + + ++ + +++++ +K+ E + N + Sbjct: 69 NPKFFESLTLQDFYAFLSFLDNEKNDSSTTRSRKISAIKSFYKYLFSEIEVIDSNISDKL 128 Query: 162 ERPKRKTEGIRPWTKEDMQQ------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215 PK T + + + + L +G+R S+ ++ Sbjct: 129 SNPKISQRQPVYLTLNETELLLDTIKNEPNEFLRFRDLAIVFTFLTTGMRLSELVSINME 188 Query: 216 HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF---------FINNDKQKMNA 266 + + F+I + TV L + +LL + + + FI+ K++++ Sbjct: 189 DIIYDHFNIIGKGN-KERTVYLTNNCRELLDQYILIRNKYIKDLKIDALFISTRKKRISN 247 Query: 267 TQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETY 322 KAG + S H +R +AT+ G L G + + Y Sbjct: 248 RAVQSTIDKYLKKAGFDTSVYSTHKLRHTAATLMYKYGNVDIRALKDILGHVNISTTQIY 307 Query: 323 TKGADR 328 T D Sbjct: 308 THLDDE 313 >gi|69245857|ref|ZP_00603674.1| Phage integrase [Enterococcus faecium DO] gi|257879174|ref|ZP_05658827.1| phage integrase [Enterococcus faecium 1,230,933] gi|257882007|ref|ZP_05661660.1| phage integrase [Enterococcus faecium 1,231,502] gi|257890004|ref|ZP_05669657.1| phage integrase [Enterococcus faecium 1,231,410] gi|258615572|ref|ZP_05713342.1| phage integrase family site specific recombinase [Enterococcus faecium DO] gi|260560179|ref|ZP_05832356.1| phage integrase [Enterococcus faecium C68] gi|261208049|ref|ZP_05922724.1| phage integrase [Enterococcus faecium TC 6] gi|289565520|ref|ZP_06445968.1| phage integrase [Enterococcus faecium D344SRF] gi|293563460|ref|ZP_06677908.1| site-specific recombinase, phage integrase family [Enterococcus faecium E1162] gi|294615159|ref|ZP_06695043.1| site-specific recombinase, phage integrase family [Enterococcus faecium E1636] gi|294620828|ref|ZP_06700032.1| site-specific recombinase, phage integrase family [Enterococcus faecium U0317] gi|68195559|gb|EAN10001.1| Phage integrase [Enterococcus faecium DO] gi|257813402|gb|EEV42160.1| phage integrase [Enterococcus faecium 1,230,933] gi|257817665|gb|EEV44993.1| phage integrase [Enterococcus faecium 1,231,502] gi|257826364|gb|EEV52990.1| phage integrase [Enterococcus faecium 1,231,410] gi|260073746|gb|EEW62071.1| phage integrase [Enterococcus faecium C68] gi|260077633|gb|EEW65349.1| phage integrase [Enterococcus faecium TC 6] gi|289162718|gb|EFD10570.1| phage integrase [Enterococcus faecium D344SRF] gi|291591979|gb|EFF23604.1| site-specific recombinase, phage integrase family [Enterococcus faecium E1636] gi|291599613|gb|EFF30626.1| site-specific recombinase, phage integrase family [Enterococcus faecium U0317] gi|291604462|gb|EFF33948.1| site-specific recombinase, phage integrase family [Enterococcus faecium E1162] gi|323481381|gb|ADX80820.1| phage integrase family protein [Enterococcus faecalis 62] Length = 380 Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats. Identities = 43/363 (11%), Positives = 112/363 (30%), Gaps = 45/363 (12%) Query: 11 VTKERTRHGKIIYYFR--KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI---NSPR 65 ++K + ++G++ + ++ R + A R I + Sbjct: 4 ISKYKKKNGQVAWMYKGHIATDPRTGEKINTTRRGFSSKQEAQKDYDEYRHQILYGVKKK 63 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRI-SFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 T + L +E+ S+ ++ S +QI+ G I+ + + V+ Sbjct: 64 APDMTFEDLYNEWITHQR-TSVKASTIAISVRYANNQILPAFGKLKLSNISVPYCQKVVD 122 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG--IRPWTKEDMQQF 182 S + ++ V +Y+ NP P++K + ++KE++ Sbjct: 123 EWHSKYESYDYMRKQTAQILRYGVAMQYIDNNPMEKTLLPRKKEYEKNRKFYSKEELNNL 182 Query: 183 KSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--------------- 225 + + + F L Y+G+R S+ + + + Sbjct: 183 LDAFKDFGNMKQYAFFRLLAYTGMRKSEVLALQWKDIDTFNKELHVNKTLAVDEFGKVII 242 Query: 226 --TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN---------------ATQ 268 + + + L + +L + ++ ++ + Sbjct: 243 QSPKTRASRRVISLDTETLSILNNWKLQQKEEYLKLGYNTSSKEQHVFTTVKNTLYIPNT 302 Query: 269 FSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGA 326 + W + K + + + HG R A++ +AG + + G + + Y Sbjct: 303 VNDWLRYILKKYNLPRITPHGFRHTHASLLLEAGESVKVVQQRLGHENSKVTLDIYAHIT 362 Query: 327 DRI 329 + Sbjct: 363 NNA 365 >gi|167829962|ref|ZP_02461433.1| phage integrase family protein [Burkholderia pseudomallei 9] gi|226199441|ref|ZP_03794999.1| phage integrase family protein [Burkholderia pseudomallei Pakistan 9] gi|225928517|gb|EEH24546.1| phage integrase family protein [Burkholderia pseudomallei Pakistan 9] Length = 350 Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats. Identities = 42/328 (12%), Positives = 102/328 (31%), Gaps = 20/328 (6%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 +T G R+ + + + +I + TT+ Sbjct: 6 KTPSGTWKATIRRVGWPTV-AKTFRTKRDAEDWARRTEDEMVRGVFIQRAPSEKTTVADA 64 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134 + Y + +++ + ++ G + +T + + R + Sbjct: 65 LDRYEREIVPTK-KTSTQRREGARIRELKAHFGKYSLAAVTPDLVGRYRDDRLAQGKANN 123 Query: 135 QF---LTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 L + LF A+++ ++ NP ++ +P+ R + + + + Sbjct: 124 TVRLELALLGHLFNVAIKEWHIGLVYNPVANIRKPRPGEGRNRRLSGREQALLLAAIDKH 183 Query: 190 SQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL--- 244 + P L + L +G+R S+ + ++ T +P + Sbjct: 184 TNPMLGWIVRLAIETGMRQSEIVGLRRGQIDLERRVVRLTDTKNNAARTVPLTKLAASVL 243 Query: 245 -------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSATI 296 + F K A QF+ + A + G ++ H +R + + Sbjct: 244 QSALANPIRPIDTDLVFFGEPGRDGKRRAYQFTKVWNAIKKQTGLIDFRFHDLRHEAVSR 303 Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324 +AG + E+ + G K++ YT Sbjct: 304 LVEAGLSDQEVASISGHKSMQMLRRYTH 331 >gi|114566841|ref|YP_753995.1| integrase/recombinase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337776|gb|ABI68624.1| integrase/recombinase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 306 Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats. Identities = 28/281 (9%), Positives = 68/281 (24%), Gaps = 29/281 (10%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-------TKHIRSGV 123 LK+ I E+++ + ++ + ++ + + + ++T ++ Sbjct: 3 LKFAIKEFQEDREFRQISKATLTNYMGCLKEFHTYCLEKEIIEVTDITSNTIKSYLIYCQ 62 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR----------KTEGIRP 173 + R + P++ L S+++ F + E + + Sbjct: 63 KERGNNPTTINSKLRSIKIFFNYLQEIEIFNEKNNPIHKVNYIKANVKIEVFSDKQINEM 122 Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233 + + + + LL +G+R + C + I Sbjct: 123 LSYYRRIKTRDKSLYAYRDSTIIITLLGTGMRLGELCNLKWSDVDFENQHIILFGKLQTQ 182 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWFKAKATKAGVN- 283 T +K ++ FK Sbjct: 183 TSIPMADKLKSELQEYKLFCQKQFGKLPMFVFVDRTGKPLSPNAVKNMFKRLKQIMNFPN 242 Query: 284 --KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 A+ R A G L + E Y Sbjct: 243 VRCCAYDFRHTFAHRFLMNGGDVFTLQKLLRHSSPAMTERY 283 >gi|325956667|ref|YP_004292079.1| integrase-recombinase [Lactobacillus acidophilus 30SC] gi|325333232|gb|ADZ07140.1| integrase-recombinase [Lactobacillus acidophilus 30SC] gi|327183490|gb|AEA31937.1| integrase-recombinase [Lactobacillus amylovorus GRL 1118] Length = 302 Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats. Identities = 36/276 (13%), Positives = 93/276 (33%), Gaps = 25/276 (9%) Query: 75 ISEYRKSAHWGSL-AVNSRISFESYFDQIIRKS-------GDFDYRKITTKHIRSGVESR 126 + ++ + + + S+ + + + G + + + R Sbjct: 8 LDQFISYLQFERYYSKKTISSYATDLHEAKKFWQENGGFAGWKKVTERDIQIYIQHLGDR 67 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 K SS + ++S+ +++ R+ V I+P +V + + + + + + +++Q Sbjct: 68 KLARSSQARQMSSLHSFYRFLTRRRIVKIDPTQTVVIRRGEKKLPQFFYQPEIKQVFDSL 127 Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGF 241 + FE +G+R S+ + + ++ +I K V D Sbjct: 128 QGDKPLTVRNLALFELFYATGMRVSEVSGLTLPQIDLDLKTILVHGKGNKDRYVAFDDRT 187 Query: 242 MKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289 L ++ F++N + ++ + +AG+ H + Sbjct: 188 KNSLLNYLNNARPRLLKDKDEQHVFLSNQGKAISDRGIQYVMQKTFNQAGISGKVHPHEL 247 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 R AT + GA + G ++ + YT Sbjct: 248 RHTFATAMLNNGADMRSVQELLGHSSLSATQIYTHV 283 >gi|254439723|ref|ZP_05053217.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 307] gi|198255169|gb|EDY79483.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 307] Length = 360 Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats. Identities = 48/320 (15%), Positives = 105/320 (32%), Gaps = 16/320 (5%) Query: 9 PFVTKERTRHGKIIYYFRKGHG--RRIRLPYPHESTFIPAYMSALT-GSTPKREYINSPR 65 + + K Y+ + G +RI + + A +AL R + + Sbjct: 28 KGLVLFVGKRSKTWYFQKDVGGQTKRILIGRFPIISAQAARQTALGFALEMGRGAGKAAQ 87 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 TL+ + Y + ++I + ++ +I+ Sbjct: 88 LGAPTLEAAMEGYLARPKLR--SETNKIGMRAQLTLHLKDWMRLPLDEISKAMAVRRHHD 145 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 +PS+A L S R ++ A R + P +++E + K +G R + Sbjct: 146 MAGSPSAANHVLRSFRAIYNHARRTCDLPECPTMAIEWFEDKPDG-RIIENLKHWRKTID 204 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 R+ +E LL++GLR ++ + +Q + + K G + + ++L Sbjct: 205 DLPNPIHRVFYELLLFTGLRKTEVFTLKWEQIQEDRIHLPMTKNGRSFDLPISQLHHEIL 264 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAH 305 A + + S + + H R+ AT++ +AG Sbjct: 265 APLRPLSRDWVF------PSPKSESGHITRPER---LKYNPHMHRRTFATVAMEAGVLEE 315 Query: 306 ELMATYGWKTVDQA-ETYTK 324 + + + YT+ Sbjct: 316 IVGRLLNHTPLSITGQRYTR 335 >gi|48477921|ref|YP_023627.1| DNA integration/recombination/invertion protein [Picrophilus torridus DSM 9790] gi|48430569|gb|AAT43434.1| DNA integration/recombination/invertion protein [Picrophilus torridus DSM 9790] Length = 276 Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats. Identities = 42/268 (15%), Positives = 88/268 (32%), Gaps = 20/268 (7%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----KH 128 I + ++N+ ++S I I I ++ Sbjct: 2 DYIKNFENYMIGERKSLNTIKEYKSLVRDFINYINKKP-EDINDFDIEDYKRHLAVDKRY 60 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + SS + ++++ + I ++ P+R + + + S Sbjct: 61 SKSSQYLSMKAIKLFLQ------SRDIKIPRTLNAPRRNKKIPVYLNTNEAKNLIKASSN 114 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLA 246 + LLYSG+R S+ C ++ + NI +++ K G +PD ++L Sbjct: 115 NRKHLAIVSLLLYSGIRVSELCNLKIEDIDLNENIIYVRSGKGGKDRIAIIPDECSEILR 174 Query: 247 MTPIGKETFFINNDKQ-----KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 + + + + + + K A +AG+ K + H +R AT Sbjct: 175 SYYNDRLKYPGDTFFISNKKSRYDTSTIERLIKKLAVRAGIEKHVTPHVLRHTFATSVLR 234 Query: 300 AGATAHELMATYGWKTVDQAETYTKGAD 327 G + G +V + YT D Sbjct: 235 NGGDIRFIQQILGHASVATTQIYTHIDD 262 >gi|326387303|ref|ZP_08208913.1| hypothetical protein Y88_1353 [Novosphingobium nitrogenifigens DSM 19370] gi|326208484|gb|EGD59291.1| hypothetical protein Y88_1353 [Novosphingobium nitrogenifigens DSM 19370] Length = 303 Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats. Identities = 51/301 (16%), Positives = 103/301 (34%), Gaps = 11/301 (3%) Query: 51 LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110 L + + + TL ++ YR+S + LA +++ + + D+I K G Sbjct: 4 LALIMKAEKARSPTKGALATLDDVLDRYRQSPEFSKLAESTKRDYRLWLDRISEKFGQAP 63 Query: 111 YRKIT----TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 I + P +A + +M + WA + + +N + + Sbjct: 64 IAAFEDQRMRTEIIDWRNTWADQPRTADKASVTMATVLGWAQGEGILPVNIATGIRQLHH 123 Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQ----PRLAFEFLL--YSGLRCSDSCRAGVQHLQNN 220 + + W + + + + L L +GLR D R + + Sbjct: 124 VNKADQIWEDRHWEAMRGSKDKNGRSLYSDHLDRALRLASLTGLRLGDLVRVAWEDVGEK 183 Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280 + T+K + + LL G N+ + + F+ Sbjct: 184 AIILTTRKRKGRAIIPILPDLRGLLDSIGTGAGPILRNSRGEPWTESGLGSVFQKAKPD- 242 Query: 281 GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 G +++ H +R AT A G T E+ T GW +E ++ D R+ + R+S Sbjct: 243 GFDRTMHDLRGTYATWLAMRGLTDEEIARTIGWTAKRISEIRSRYVDEARVIVSMVERLS 302 Query: 341 S 341 + Sbjct: 303 A 303 >gi|215486887|ref|YP_002329318.1| predicted integrase [Escherichia coli O127:H6 str. E2348/69] gi|291282843|ref|YP_003499661.1| integrase [Escherichia coli O55:H7 str. CB9615] gi|215264959|emb|CAS09345.1| predicted integrase [Escherichia coli O127:H6 str. E2348/69] gi|290762716|gb|ADD56677.1| integrase [Escherichia coli O55:H7 str. CB9615] Length = 324 Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats. Identities = 45/304 (14%), Positives = 90/304 (29%), Gaps = 18/304 (5%) Query: 28 GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87 G+RIR + Y + E+ + + L LI + K Sbjct: 19 RKGKRIR-KKFKTKSDAVLYERWVLAQQHNNEWKGNSIDRRP-LSVLIDLWWKYHGQLMK 76 Query: 88 A-VNSRISFESYFDQIIRKSGDFDYRKITTKH---IRSGVESRKHTPSSAIQFLTSMRVL 143 + N+ ++ D K+ T +R + PS+ + + ++ + Sbjct: 77 SGHNT----RLKLLRLSEAMDDPCVHKLNTTMLTELRVSRIEQGIQPSTINREIGALSAM 132 Query: 144 FK-WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202 F ++ NP ++ K + +K + Q +E RLA E LL + Sbjct: 133 FTALISSGHFLNDNPVQGLKGMKVNEREMGYLSKSECVQLLDALAENPDERLAVEILLST 192 Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262 G R + + + + + K TV + + + + ++ Sbjct: 193 GARWGEVAALEQRRVLHCRITFSKTKNSKNRTVPISESLFEKIKKRGGKLVFPTLDYPL- 251 Query: 263 KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 K A ++ H +R A+ G L G + Y Sbjct: 252 ------VRDVIKTVAPDVPDGQAVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIY 305 Query: 323 TKGA 326 A Sbjct: 306 AHLA 309 >gi|307290557|ref|ZP_07570469.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecalis TX0411] gi|306498412|gb|EFM67917.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecalis TX0411] gi|315030231|gb|EFT42163.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecalis TX4000] gi|315144768|gb|EFT88784.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecalis TX2141] Length = 393 Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats. Identities = 42/363 (11%), Positives = 112/363 (30%), Gaps = 45/363 (12%) Query: 11 VTKERTRHGKIIYYFR--KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI---NSPR 65 ++K + ++G++ + ++ R + A R I + Sbjct: 17 ISKYKKKNGQVAWMYKGHIATDPRTGEKINTTRRGFSSKQEAQKDYDEYRHQILYGVKKK 76 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRI-SFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 T + L +E+ S+ ++ S +Q++ G I+ + + V+ Sbjct: 77 APDMTFEDLYNEWITHQR-TSVKASTIAISVRYANNQVLPAFGKLKLSNISVPYCQKVVD 135 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG--IRPWTKEDMQQF 182 S + ++ V +Y+ NP P++K + ++KE++ Sbjct: 136 EWHSKYESYDYMRKQTAQILRYGVAMQYIDNNPMEKTLLPRKKEYEKNRKFYSKEELNNL 195 Query: 183 KSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--------------- 225 + + + F L Y+G+R S+ + + + Sbjct: 196 LDAFKDFGNMKQYAFFRLLAYTGMRKSEVLALQWKDIDTFNKELHVNKTLAVDEFGKVII 255 Query: 226 --TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN---------------ATQ 268 + + + L + +L + ++ ++ + Sbjct: 256 QSPKTRASRRVISLDTETLSILNNWKLQQKEEYLKLGYNTSSKEQHVFTTVKNTLYIPNT 315 Query: 269 FSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGA 326 + W + K + + + HG R A++ +AG + + G + + Y Sbjct: 316 VNDWLRYILKKYNLPRITPHGFRHTHASLLLEAGESVKVVQQRLGHENSKVTLDIYAHIT 375 Query: 327 DRI 329 + Sbjct: 376 NNA 378 >gi|260890377|ref|ZP_05901640.1| tyrosine recombinase XerD [Leptotrichia hofstadii F0254] gi|260859997|gb|EEX74497.1| tyrosine recombinase XerD [Leptotrichia hofstadii F0254] Length = 257 Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats. Identities = 43/242 (17%), Positives = 89/242 (36%), Gaps = 15/242 (6%) Query: 106 SGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163 ++ +I K I +E+ K +S ++ +++++ +K+ + V +P ++ Sbjct: 7 FAQKNFSEIEEKDIFEYIENLNEKLRRNSVLRKVSALKTFYKFCYLNKDVEKDPTGMIKT 66 Query: 164 PKRKTEGIRPWT---KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220 KR+ T + + EG Q +L + L+ +G R S++ ++ ++N Sbjct: 67 LKREQRLPEILTLKEMKQIVDNCPHTPEGMQNKLIIKILIATGARISETLNLEIKDVENQ 126 Query: 221 IFSIKT------QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT-QFSIWF 273 + + I L + LA+ + + +F Sbjct: 127 DYEFIKVLGKGSKYRIIPIYDSLENEIKNYLAIYRPKLKNASESFKIFPNTRREKFWKDL 186 Query: 274 KAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 K A A + K+ H R ATI GA + G + E YT ++ +L Sbjct: 187 KTIAKNAKIEKNVYPHIFRHSLATILLGNGADIRIVQEILGHANITTTEVYTH-VEKSKL 245 Query: 332 GI 333 I Sbjct: 246 KI 247 >gi|85713796|ref|ZP_01044786.1| tyrosine recombinase XerD [Nitrobacter sp. Nb-311A] gi|85699700|gb|EAQ37567.1| tyrosine recombinase XerD [Nitrobacter sp. Nb-311A] Length = 340 Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats. Identities = 51/327 (15%), Positives = 101/327 (30%), Gaps = 40/327 (12%) Query: 41 STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD 100 + F+ A S + + S + T L L + + N+ ++ + Sbjct: 2 TRFLDANRSFTSLENAIGGGMTSDKVSDTKLAALFLDMLAAEQGAG--ENTLDAYRRDLE 59 Query: 101 QIIRKSGDFD-----YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155 + T + + ++ R SS + L++MR LF++ + + + Sbjct: 60 DLSAFLARARRSFVIADTQTLRDYLNDLDLRGFKSSSVARRLSAMRHLFRFLLSERVRSD 119 Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--------------QPRLAFEFLLY 201 +P + PKR + + D+ + + + + E L Sbjct: 120 DPAAILSGPKRGRSLPKILSIADVDRLLARAKADAESPDISPARRLRAARLYCLLEVLYA 179 Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLLAMT------------ 248 +GLR S+ + + + I + G V L D + +A Sbjct: 180 TGLRVSELVSLPLSAARRDARMIVVRGKGGKERLVPLNDASRQAMANYLVAIDDQRGAGK 239 Query: 249 ---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGA 302 K F D + F+ K A AG+ S H +R A+ GA Sbjct: 240 TAATRPKWLFPSFGDSGHLTRQHFARELKELAAAAGLAPRLVSPHVLRHAFASHLLHNGA 299 Query: 303 TAHELMATYGWKTVDQAETYTKGADRI 329 + G + + YT + Sbjct: 300 DLRIVQTLLGHTDISTTQIYTHVVEER 326 >gi|269797506|ref|YP_003311406.1| integrase family protein [Veillonella parvula DSM 2008] gi|269094135|gb|ACZ24126.1| integrase family protein [Veillonella parvula DSM 2008] Length = 403 Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats. Identities = 43/381 (11%), Positives = 110/381 (28%), Gaps = 60/381 (15%) Query: 19 GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78 GK F ++ ++ + Y ++ + K T LK + + + Sbjct: 21 GKWRGQFSITKDNQLIRRAFSGNSKLEVYKLGKQWIEATQQNTSIFSSKNTKLKDICNYW 80 Query: 79 RKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH--------- 128 + S+ + ++S I+ G+ IT + +++ + + + Sbjct: 81 LQDVKKVSVKPKTFQKYDSTLRLYILPLLGEIKIASITPQQVQTVLNNWSNGTLKGKKGH 140 Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ----- 181 + S+ + LF++AV + NP + P+ T I + +++ Q Sbjct: 141 IISSSTIRCTRRYLSELFEYAVNIGLLLKNPIKLTKAPRLITTEIHTLSLDEIHQLTSTM 200 Query: 182 --------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS---------- 223 + +A + L +G+R + + Sbjct: 201 KQQVSNNISSPYRINYYSSYIATKIALGTGMRLGEVFGLCWDCVDLIHGHISVRRTIQTG 260 Query: 224 ------IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF-------- 269 T+ + + + L + + + ++ Sbjct: 261 TKGQIFQDTKTKTSRRCIPISQELQSELTTYKEFQSNYAKELGDKWTDSYGVVISGTFGK 320 Query: 270 --------SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QA 319 S +F + ++ + H +R AT+ + G T+ Sbjct: 321 ILSTSNFKSRYFIPILKQLNLDHITFHDLRHTHATLLLSQKINPKIVQERLGHSTITLTL 380 Query: 320 ETYTKGA-DRIRLGIKNSRRI 339 +TY+ D + +K + Sbjct: 381 DTYSHLVPDIQKEAVKALDNL 401 >gi|116751213|ref|YP_847900.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB] gi|116700277|gb|ABK19465.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB] Length = 304 Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats. Identities = 41/292 (14%), Positives = 92/292 (31%), Gaps = 30/292 (10%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD------------YRKITTKHIRSGV 123 + A + ++ + R +G+ ++ + + Sbjct: 15 EAFCARLSAEGRATATIAAYRRDLALVARVAGELAPGIVCRAVTAGFLDQVFSAGAVTES 74 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 E + +S + ++R F WAV V NP S+ + + T + ++ Sbjct: 75 ERGPRSAASLHRMKAAVRAFFAWAVEVGVVDDNPARSIRMQRLPRKLPVFLTTAEKKRLL 134 Query: 184 -----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 + R E LL +G+R + + + + ++ + G + V+ Sbjct: 135 KELKGRTDFSALRDRAMIEVLLGTGIRLGELAALDMDDIDLDAKHLRVRAKGNVPQVKFI 194 Query: 239 DGFMKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWFKAKATKAGVNK--SAH 287 ++ L + + + + ++ Q + KAG+ K + H Sbjct: 195 KTDLRTLLRRYLAERRRHGRPEMEALFLSNRDGRLCQRQIANRLAHWLRKAGIEKELTPH 254 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 G+R AT A + G + V + YT D + R+ Sbjct: 255 GLRHTFATHLYGATNDLLVVQRALGHRDVSTTQIYTHLVDGQ--LEEALERL 304 >gi|295108956|emb|CBL22909.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162] Length = 363 Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats. Identities = 55/343 (16%), Positives = 104/343 (30%), Gaps = 38/343 (11%) Query: 28 GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87 G ++ R + + + ++S R L I Y S L Sbjct: 22 GEKKKRRKRGFETKREALEF--------ERSKKLSSERSMDMKLSDFIEIYF-SDKQNDL 72 Query: 88 AVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS---MRVL 143 + + I+ G+ +I I + S + L Sbjct: 73 KDRTIKNKRYMMQQHIVPYFGNQMMSEIKASQIIQWQNEIQKKGYSDSYLRMIQNQLTSL 132 Query: 144 FKWAVRQEYVAINPCLSVERP-KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202 F A + + +NPC V+R + + WT ++ +QF G++ L FE L ++ Sbjct: 133 FTHAAKIYDLPVNPCKKVKRMGNSDSRSLNFWTLDEYKQFIQTMEPGTRYYLMFEMLFWT 192 Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------------ITVELPDGFMKLLA 246 G R + + + KT T+E+P+ + + Sbjct: 193 GCRIGELLAITKADINFEKNQLSINKTYYRTGMQDIITEPKTKQSFRTIEIPEFLKEEIK 252 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAH 305 G + K + AGV K H +R + G Sbjct: 253 EFVDGHYGMPDTERLFPVVQEAVQHKMKRQIELAGVKKIRVHDIRHSHVAYLIEKGVEPL 312 Query: 306 ELMATYGWKTVD-QAETYTKGADRIRLGIKNSRRISSVVDSDD 347 + G K + TY L R+I++++D+++ Sbjct: 313 LIRDRLGHKDIRITLNTYGH------LYPNQQRKIANLLDNEN 349 >gi|322376773|ref|ZP_08051266.1| toxin-antitoxin system, toxin component, PIN family [Streptococcus sp. M334] gi|321282580|gb|EFX59587.1| toxin-antitoxin system, toxin component, PIN family [Streptococcus sp. M334] Length = 381 Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats. Identities = 50/382 (13%), Positives = 116/382 (30%), Gaps = 50/382 (13%) Query: 11 VTKERTRHGKIIYYFRK--------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62 + K T+ G+ Y F+ G +R L + + N Sbjct: 2 IKKYITKKGETRYLFQTYLGIDPATGKEKRTTRRGFKTIKEAKVAERDLLLDVEENGFSN 61 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRS 121 + + T + + S ++ + + + D +I D ++I+ + + Sbjct: 62 NEDFQNPTFAEVAELWLDSYK-NTVKPTTYQNVKKKLDVMIDLYFTDMKIQQISVAYCQK 120 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK--TEGIRPWTKEDM 179 + + + + +FK+ + + NP + +PK + +TK+++ Sbjct: 121 VAIQLSNRYILYANYYSVISRIFKYTTSIDIIKSNPLDKIIKPKNRPLKGKENYYTKQEL 180 Query: 180 QQFKSFWSEG--SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-------------- 223 +F + F L +SGLR ++ + Sbjct: 181 TEFLKVYKANCKPVDYTFFHLLAFSGLRTGEAIGLMWSDVDFENKRLSISRTAVVVNKKQ 240 Query: 224 --IKTQKTGTIITVELPDGFMKLLAMTP---------------IGKETFFINNDKQKMNA 266 + + + L D + +L F N+ ++ Sbjct: 241 TVQDPKTKMSKRVITLDDETLNVLKFWKRQQIKEYFRASVPYKHDSNYIFTNSFGGWISP 300 Query: 267 TQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYT 323 + + + + HG R A++ +AG TA + G V + YT Sbjct: 301 SAVKERLRRFFYEHKDVKKITPHGFRHTHASLLFEAGVTAKIISDRLGHNNVQTTLDMYT 360 Query: 324 KGADRIRLGIKNSRRISSVVDS 345 D R ++ ++ + + S Sbjct: 361 HINDNQR--VEVVDQLMTFIRS 380 >gi|227499531|ref|ZP_03929638.1| possible tyrosine recombinase XerC [Anaerococcus tetradius ATCC 35098] gi|227218410|gb|EEI83661.1| possible tyrosine recombinase XerC [Anaerococcus tetradius ATCC 35098] Length = 329 Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats. Identities = 43/306 (14%), Positives = 95/306 (31%), Gaps = 52/306 (16%) Query: 74 LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDY---------RKITTKHIRSGV 123 ++++Y L+ N+ + + +IR + + I V Sbjct: 9 ILTDYLNYLKSIRGLSSNTIREYNYDLNLMIRFMLVRKIYYGDFERFDEQFDPESINKIV 68 Query: 124 ESRKHT---------------------PSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSV 161 + + S+ + ++++R +K+ E + N + Sbjct: 69 DPKFFETLSLQDFYSYLSYLDNDKSDLASTRSRKISAIRSFYKYLFSEIEVIDTNISDKL 128 Query: 162 ERPKRKTEGIRPWTKEDMQQFK------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215 PK T ++ ++ + L +G+R S+ ++ Sbjct: 129 TNPKISQRQPVYLTLQETEKLLETVKGEQNEFLKCRDLAIIFTFLTTGMRLSELVSVNLR 188 Query: 216 HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF---------FINNDKQKMNA 266 + N+ F+I + T+ L + L+ + + FI+ K++++ Sbjct: 189 DISNDHFNIIGKGN-KERTIYLTSNCIDLIEKYIEVRGKYVKNIDIDALFISTRKKRISN 247 Query: 267 TQFSIWFKAKATKAGVNKSA---HGVRKFSATISADAG-ATAHELMATYGWKTVDQAETY 322 KAG + S H +R +AT+ G L G V + Y Sbjct: 248 RAVQSTIDKYLKKAGFDVSVYSTHKLRHTAATLMYKYGNVDIRALKDILGHANVSTTQIY 307 Query: 323 TKGADR 328 T D Sbjct: 308 THLDDE 313 >gi|150017168|ref|YP_001309422.1| phage integrase family protein [Clostridium beijerinckii NCIMB 8052] gi|149903633|gb|ABR34466.1| phage integrase family protein [Clostridium beijerinckii NCIMB 8052] Length = 389 Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats. Identities = 46/380 (12%), Positives = 103/380 (27%), Gaps = 60/380 (15%) Query: 16 TRHGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 ++G + G+RI L + + A + + K Sbjct: 8 KKNGTNYFRVSAVLGTDSKGKRI-LKEFYGKSKSEAEEKKRE-YLEGIKNGLNIDTKRVL 65 Query: 71 LKWLISEYR-KSAHWG-SLAVNSRISFESYFDQIIRK--SGDFDYRKITTKHIRSGVESR 126 L LI + ++ + + +E + ++ ++ ++ Sbjct: 66 LGELIHTWLFETIRVSDRIKPTTFEKYEGLYRNYVKDSPLYSIKLSELKALQVQRYYNGL 125 Query: 127 KHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED---MQ 180 S ++ F +AV + Y++ NPCL + + R + Sbjct: 126 SDIGKSRNLIENLNKLLKQFFNYAVDEGYLSKNPCLGKKIVIPGEKKPRKEVQHFSDEEI 185 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 + + ++ R L +GLR + + + +K K+ + + DG Sbjct: 186 EILVSNLKDNRYRELILLSLGTGLRRGELLALTWEDIDLKNKIVKVNKSLAKVYIIAGDG 245 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQF------------------------------- 269 + + + K I N T Sbjct: 246 SKERKQIIQVPKTRGSIREVSFPDNLTSIFKDIRIKQRRDRLKCGESYEVSDHVFTTSSG 305 Query: 270 --------SIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320 S ++ K + K H +R AT + + G ++D Sbjct: 306 SLIDVTNLSHAWEHLLKKCKLPHKKFHALRHTFATKLFENEVALKTVSELLGHSSIDMTA 365 Query: 321 -TYTKGADRIRLGIKNSRRI 339 TYT + + ++ Sbjct: 366 NTYTHVIPKQK--SDAVEKL 383 >gi|218263889|ref|ZP_03477845.1| hypothetical protein PRABACTJOHN_03535 [Parabacteroides johnsonii DSM 18315] gi|218222439|gb|EEC95089.1| hypothetical protein PRABACTJOHN_03535 [Parabacteroides johnsonii DSM 18315] Length = 327 Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats. Identities = 42/264 (15%), Positives = 87/264 (32%), Gaps = 14/264 (5%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 LI + + + S + S + IRK G + R ITT +R+ + + T Sbjct: 50 SELIDSFLSAKRVEGCSDKSIHYYRSTLNNAIRKIG-KNIRHITTDDLRNYLNDYQQTSG 108 Query: 132 ----SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + + F W ++Y+ +P + + K ++ E ++Q + Sbjct: 109 ATKVTVDNIRRILSSFFSWLEDEDYIVKSPVRRIHKVKVGKTVKETYSDEALEQMRDHC- 167 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLA 246 EG + + L +G+R + + + I T K V L Sbjct: 168 EGIRDLALIDLLASTGMRVGELVKLNRNDIDFENRECIVTGKGDKQRRVYFDARAKIHLQ 227 Query: 247 MTPIGKETFFINND------KQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299 + ++ + I + + + K H R+ AT++ D Sbjct: 228 RYLAERIDDNPALFVSLLAPYDRLQISGVEIRLRRLGRELNIPKVHPHKFRRTLATMAID 287 Query: 300 AGATAHELMATYGWKTVDQAETYT 323 G ++ G +++D Y Sbjct: 288 KGMPIEQVQHLLGHQSLDTTLQYA 311 >gi|15835241|ref|NP_297000.1| site-specific tyrosine recombinase XerC [Chlamydia muridarum Nigg] gi|270285413|ref|ZP_06194807.1| site-specific tyrosine recombinase XerC [Chlamydia muridarum Nigg] gi|270289427|ref|ZP_06195729.1| site-specific tyrosine recombinase XerC [Chlamydia muridarum Weiss] gi|301336810|ref|ZP_07225012.1| site-specific tyrosine recombinase XerC [Chlamydia muridarum MopnTet14] gi|34223083|sp|Q9PK47|XERC_CHLMU RecName: Full=Tyrosine recombinase xerC gi|8163270|gb|AAF73578.1| integrase/recombinase, phage integrase family [Chlamydia muridarum Nigg] Length = 315 Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats. Identities = 40/301 (13%), Positives = 95/301 (31%), Gaps = 43/301 (14%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF-------DYR---------- 112 + + Y K+ + ++ ++ + Sbjct: 4 SFYAFLD-YLKNMKAA--SPHTLRNYSIDLSSLKCFLEKKGELTPTPPLSLQEDSRSSSQ 60 Query: 113 ----KITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165 T ++IR + + H+ + + L++++ K+ V+ +++ NP + P+ Sbjct: 61 LSFSLFTKENIRLYLLEQIQTTHSKRTVRRRLSAIKSFAKFCVKNQWIPENPAEMIRGPR 120 Query: 166 RKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221 E P T E + S G + R E SGLR S+ + Sbjct: 121 LPKELPSPLTYEQVLALMSAPDLDKVTGFRDRCLLELFYSSGLRISEITALNRSDIDFQS 180 Query: 222 FSIKTQKT-GTIITVELPDGFMKLLAMTPIG---------KETFFINNDKQKMNATQFSI 271 ++ V + ++ L + F+N ++++ Sbjct: 181 NLLRICGKGKKERIVPMTKVAVQWLQAYLDHPDRAAVEQDHQACFLNRFGKRLSTRSIDR 240 Query: 272 WFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 F+ K G+ + H +R AT + G + G +++ YT + ++ Sbjct: 241 KFQQYLLKTGLSGTITPHTIRHTIATHWLERGMDLKTIQLLLGHTSLETTTIYTHVSMKL 300 Query: 330 R 330 + Sbjct: 301 K 301 >gi|326794173|ref|YP_004311993.1| integrase family protein [Marinomonas mediterranea MMB-1] gi|326544937|gb|ADZ90157.1| integrase family protein [Marinomonas mediterranea MMB-1] Length = 323 Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats. Identities = 43/303 (14%), Positives = 95/303 (31%), Gaps = 44/303 (14%) Query: 69 TTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESR 126 ++ + S Y + L+ ++ ++ Q + +G I K + + Sbjct: 2 DSISRIASRYLQFCQKNRKLSGHTLKAYRIDLKQFVECTGVKTSVNAIDKKDLHKFHDYL 61 Query: 127 KHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER-PKRKTEGIRPWTKEDMQQF 182 + SS + L +R +F+W ++E + + P K R K D+++ Sbjct: 62 ADSELSQSSIKRKLACIRAMFRWLEQEEEIEVTPFHKFNTSIKLPKRLPRNVNKSDLKRM 121 Query: 183 KSFWSEGSQPR---------------------------LAFEFLLYSGLRCSDSCRAGVQ 215 + + LA E +L +G+R S+ + Sbjct: 122 LTQGRRTLDQKPLKSISDENTGFSYPTSKRDLNKLTGTLALELMLSTGMRVSELVGIQLD 181 Query: 216 HLQNNIFSIKTQKTGTIITVEL---------PDGFMKLLAMTPIGKETFFINNDKQKMNA 266 + IK G+ + K + F +N+ Q + Sbjct: 182 DIFLTERKIKIFGKGSRERYVYLPDKEICQLIRHYRKARTIVESDSSNFLLNSRGQPAST 241 Query: 267 TQFSIWFKAKATKA--GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + A ++ ++ + H +R +A ++G + G ++ E YT Sbjct: 242 QFIRKLIRLLAEQSSTQLHVTPHMLRHSAACELMESGLDIRFVQRLLGHSSISTTEIYTH 301 Query: 325 GAD 327 D Sbjct: 302 VTD 304 >gi|163813874|ref|ZP_02205268.1| hypothetical protein COPEUT_00027 [Coprococcus eutactus ATCC 27759] gi|226322754|ref|ZP_03798272.1| hypothetical protein COPCOM_00526 [Coprococcus comes ATCC 27758] gi|158450744|gb|EDP27739.1| hypothetical protein COPEUT_00027 [Coprococcus eutactus ATCC 27759] gi|225208915|gb|EEG91269.1| hypothetical protein COPCOM_00526 [Coprococcus comes ATCC 27758] Length = 363 Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats. Identities = 54/343 (15%), Positives = 104/343 (30%), Gaps = 38/343 (11%) Query: 28 GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87 G ++ R + + + +++ R L I Y S L Sbjct: 22 GEKKKRRKRGFETKREALEF--------ERSKKLSNERSMDMKLSDFIEIYF-SDKQNDL 72 Query: 88 AVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS---MRVL 143 + + I+ G+ +I I + S + L Sbjct: 73 KDRTIKNKRYMMQQHIVPYFGNQMMSEIKASQIIQWQNEIQKKGYSDSYLRMIQNQLTSL 132 Query: 144 FKWAVRQEYVAINPCLSVERP-KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202 F A + + +NPC V+R + + WT ++ +QF G++ L FE L ++ Sbjct: 133 FTHAAKIYDLPVNPCKKVKRMGNSDSRSLNFWTLDEYKQFIQTMEPGTRYYLMFEMLFWT 192 Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------------ITVELPDGFMKLLA 246 G R + + + KT T+E+P+ + + Sbjct: 193 GCRIGELLAITKADINFEKNQLSINKTYYRTGMQDIITEPKTKQSFRTIEIPEFLKEEIK 252 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAH 305 G + K + AGV K H +R + G Sbjct: 253 EFVDGHYGMPDTERLFPVVQEAVQHKMKRQIELAGVKKIRVHDIRHSHVAYLIEKGVEPL 312 Query: 306 ELMATYGWKTVD-QAETYTKGADRIRLGIKNSRRISSVVDSDD 347 + G K + TY L R+I++++D+++ Sbjct: 313 LIRDRLGHKDIRITLNTYGH------LYPNQQRKIANLLDNEN 349 >gi|163748706|ref|ZP_02155959.1| integrase/recombinase XerC [Shewanella benthica KT99] gi|161331816|gb|EDQ02620.1| integrase/recombinase XerC [Shewanella benthica KT99] Length = 308 Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats. Identities = 33/279 (11%), Positives = 87/279 (31%), Gaps = 24/279 (8%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRKH- 128 Y +S L+ ++ ++ ++ K + F + +++ + I+ + Sbjct: 9 FESYCRSE--RQLSAHTVRNYLYELHRVSAKLEENACLSFLWSEVSHEQIQHVLGQLHRQ 66 Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 +P S L++++ + + + + NP S+ PK+ + + + Sbjct: 67 GLSPRSLSLTLSAVKQFCDFLLGEGVINANPAKSLSAPKQNKPLPKNMDLDSVTHLLEID 126 Query: 187 SEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELPDGFM 242 ++ + + E SGLR ++ V ++ K V + + Sbjct: 127 ADDLLSVRDKAIMELFYSSGLRLAELAALDVLAIRFAERQVKVLGKGSKERIVPVGRCAI 186 Query: 243 KLLAMTPIGKETFFINNDKQKMN-------ATQFSIWFKAKAT--KAGVNKSAHGVRKFS 293 + + +E+ ++ + + H +R Sbjct: 187 QAIQAWLALRESILCQDEALFVTAKGKRLAHRSIQARLAKWGQEQALNMRVHPHKLRHSF 246 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 AT ++ A + G + + YT D L Sbjct: 247 ATHMLESSADLRAVQELLGHANLSTTQIYT-SLDFQHLA 284 >gi|78485001|ref|YP_390926.1| Phage integrase [Thiomicrospira crunogena XCL-2] gi|78363287|gb|ABB41252.1| Phage integrase [Thiomicrospira crunogena XCL-2] Length = 372 Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats. Identities = 57/370 (15%), Positives = 112/370 (30%), Gaps = 41/370 (11%) Query: 1 MTPSLR-----LPPFVTKERT-RHGKIIYYFRKG-HGRRIRLPYPHESTFIPAYMSALTG 53 M+P R LPP + ++ R+GK+ Y ++ G+ A Sbjct: 1 MSPKAREISLGLPPNLYAKKDKRNGKVYYQYKSPLDGKFYSFGTDKNQAVNDAVALNHNI 60 Query: 54 STPKREYINSPRKKP--TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY 111 ++ KKP + Y S + L N+ + +S ++ G+ Sbjct: 61 YDAIQKSRVEKLKKPACILFRDFWQIYFDSMNDRKLKPNTIKTRKSQYEACYPFIGNTPL 120 Query: 112 RKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169 ++ K + + + +A ++++ FK A+ Q V NP P + Sbjct: 121 NEVRVKDVADIINHYIEQDKRRTASAIRSTLKDAFKEAIHQGIVEDNPAEKTRAPSVPVK 180 Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229 R D ++ + A L +G R SD + + + +K Sbjct: 181 RQRF--NLDQVLKVLEINKETWLENAILLALITGQRVSDIAKMKFKDFDGEYLYVIQKKN 238 Query: 230 GT----IITVELPDGFMKLLAMTPIGKETFFINN---------------------DKQKM 264 D + L+MT +N ++ Sbjct: 239 RQGAPEKRYKYHKDIKLDALSMTLGDIINKCRDNVISKHLVHHTKNEGLAKKGTSCHEQT 298 Query: 265 NATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + +F+ + + + H +R SA A E G K+ E YT Sbjct: 299 ISKRFTWLVREVVDGQNLP-TFHELRSLSA-RLYKAQGNISE-QKVLGHKSAKSTEIYTD 355 Query: 325 GADRIRLGIK 334 + ++ Sbjct: 356 ARGSEWVAVE 365 >gi|239907103|ref|YP_002953844.1| site-specific recombinase [Desulfovibrio magneticus RS-1] gi|239796969|dbj|BAH75958.1| site-specific recombinase [Desulfovibrio magneticus RS-1] Length = 409 Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats. Identities = 56/396 (14%), Positives = 105/396 (26%), Gaps = 56/396 (14%) Query: 3 PSLRLPPFVTKERTRHGKIIYYFRKG-HGRRIRLPYPHESTFIPAYMS------------ 49 P +R T++ R + R G+ + S A + Sbjct: 10 PGVRFREHETRKDNRRPDRYFSIRYRCRGKNMEEGIGWASEGWTAEDASRILGEIRQNIR 69 Query: 50 -------ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQ 101 + R ++ P T L Y W +S E + Sbjct: 70 RGTGPQSLRDMARAARGEADAAEAAPLTFGELARRYLD---WAKRNKSSWKEDEYLLAKR 126 Query: 102 IIRKSGDFDYRKITTKHIRSGVESR----KHTPSSAIQFLTSMRVLFKW---------AV 148 ++ +T ++ +P + L +R ++ W Sbjct: 127 VLPLFAHRPATSLTRTDTEQFRDALLDAGGLSPMTIKHHLVVIRRVYNWAASTPVADDPG 186 Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCS 207 + NP + P E IR T+E+ + E L +G+R Sbjct: 187 HMLFEGRNPVSGIRMPLVDNERIRFLTREEADRLLEAAGERLPEMHDIILLALLTGMRRQ 246 Query: 208 DSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN--DK 261 + Q + + + + L + +L ++ F+ Sbjct: 247 EILGLMWQDVDLVNRIISIPARLTRAKRSRKAFLDEETAAMLQARREHAQSPFVFPGAVD 306 Query: 262 QKMNATQFSIWFKAKATKAGV---------NKSAHGVRKFSATISADAGATAHELMATYG 312 + + + F A G+ H +R A+ A AGA H LM G Sbjct: 307 GRRDPDHVTRQFDALVNGIGLNNGVTDPKHKVVFHTLRHTFASWLAQAGADIHHLMELTG 366 Query: 313 WKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 K++ + Y + S S P Sbjct: 367 HKSISTMQRYAHLMPGKTRA---IASLVSRRASPAP 399 >gi|220912958|ref|YP_002488267.1| integrase [Arthrobacter chlorophenolicus A6] gi|219859836|gb|ACL40178.1| integrase family protein [Arthrobacter chlorophenolicus A6] Length = 295 Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats. Identities = 40/281 (14%), Positives = 96/281 (34%), Gaps = 28/281 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTPS---SAIQFLT 138 +L+ ++R ++ + ++ + G + + +R + ++ + + + + Sbjct: 12 RALSPHTRRAYLGDLESLLAFAASEGAAELEDLELGTLRRWLGAQSQSGAARATLARRSA 71 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-------- 190 ++R WA+R+EY+ +P L ++ PKR+ +++ +G+ Sbjct: 72 TIRAFTAWALREEYLEADPALRLKAPKREQSLPGVLQAPQLERLLKELEDGAADGDPMAV 131 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTP 249 + R E L +G+R + V +L + +++ TV + Sbjct: 132 RNRAIVELLYATGIRVGELAALDVDNLDPDRRTLRVIGKGNKERTVPYGVPAALAVDDWL 191 Query: 250 IGKETFFINNDKQK----------MNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297 + ++ Q G H +R +AT Sbjct: 192 RRGRPLMAKDTSGPALFLGLRGGRVDQRQVRSVVHGLFEAMGDTSASGPHALRHSAATHL 251 Query: 298 ADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSR 337 D GA + G ++ + YT DR+R + + Sbjct: 252 LDGGADLRAVQEILGHSSLATTQIYTHVSVDRLRKSYQQAH 292 >gi|300705544|ref|YP_003747147.1| site-specific tyrosine recombinase [Ralstonia solanacearum CFBP2957] gi|299073208|emb|CBJ44566.1| site-specific tyrosine recombinase [Ralstonia solanacearum CFBP2957] Length = 329 Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats. Identities = 50/298 (16%), Positives = 89/298 (29%), Gaps = 41/298 (13%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGVESRKH- 128 I+ Y + L+ ++ ++ + R + D ++ HIRS + Sbjct: 20 IAAYLDVLKFERQLSPHTLENYTRELAVLQRLGARFAAGVDLTRLLPHHIRSMIAHLHGN 79 Query: 129 --TPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + S + L+ R +KW A+R+ V NP V PK + + E Sbjct: 80 GLSGRSIARALSVWRGWYKWLALREAAVTANPVDGVRAPKSPKRLPKALSVEQAVALMEQ 139 Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 E + R E GLR S+ ++H++ ++ V + Sbjct: 140 LPGDDPETVRDRAVNELFYSCGLRLSELVGLDLRHVKAGDYASAGWLDLEAREVMVLGKG 199 Query: 242 MKLLAMTPIGKETFFINNDKQ-------------------------KMNATQFSIWFKAK 276 K + K + ++ Q I K Sbjct: 200 NKYRTVPVGSKAAEALAAWLAVRPQLARPDAAPEDAHALFLSARGKRLTQRQIQIRMKRN 259 Query: 277 ATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 A AGV H +R AT + + G ++ + YT D L Sbjct: 260 AIAAGVPADVHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYT-SLDFQHLA 316 >gi|291536854|emb|CBL09966.1| Site-specific recombinase XerD [Roseburia intestinalis M50/1] Length = 398 Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats. Identities = 49/371 (13%), Positives = 116/371 (31%), Gaps = 46/371 (12%) Query: 7 LPPFVTKERTRHGKIIYYF----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62 +P + + ++ G F G ++I+ Y + I Sbjct: 1 MPAY---KDSKTGTWFVKFYCKDWTGENKQIKKRGFATKREALDY--------ERNYKIR 49 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRS 121 T Y + + +N+ ++ E D +I+ + +IT +R Sbjct: 50 QENNLDMTFGEFWKLYTEDVK-NYVKLNTWLTKEHIVDTKILPYFRNLKMNEITPGDVRK 108 Query: 122 GVESR---------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP-KRKTEGI 171 ++ + + +F A R + NP + + + + Sbjct: 109 WQNEMVAFRYENGKCYSQTYKKTMHNILSAIFNHACRFYNLKSNPARQAGNMGREEKKEM 168 Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 WT E+ ++F + AFE L ++G+R + ++ +++ K+ Sbjct: 169 LFWTTEEYKKFSEAVIDKPVSFYAFEMLYWTGMRLGELLALTMEDFDFEKNTVRINKSYQ 228 Query: 232 I----------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275 T++LP + + + + + + Sbjct: 229 RLQGQDVITTPKTPKSNRTIKLPKFLAEEMQEYFAMLYDQTPTDRIFLVTKSFLHHEMER 288 Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334 +GV K H +R + D G +A + G +++D Y+ ++ + Sbjct: 289 GCKLSGVKKIRIHDLRHSHISHLIDLGFSAVAIADRVGHESIDITYRYSHLFPSKQVAM- 347 Query: 335 NSRRISSVVDS 345 + R+ +V S Sbjct: 348 -ADRLDAVNAS 357 >gi|88802458|ref|ZP_01117985.1| putative site-specific recombinase [Polaribacter irgensii 23-P] gi|88781316|gb|EAR12494.1| putative site-specific recombinase [Polaribacter irgensii 23-P] Length = 301 Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats. Identities = 34/262 (12%), Positives = 81/262 (30%), Gaps = 22/262 (8%) Query: 85 GSLAVNSRISFESYFDQIIR----KSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFL 137 + ++ I++ + +R + S + S+ + + Sbjct: 19 KGYSKHTIIAYRKDLIDFSSFCALHFDQESITVVAYAQVRRWIVSLVAADISNSTINRKV 78 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGSQP 192 +S++ +K+ + + NP + K P+T +++ E + Sbjct: 79 SSLKSFYKFLQKSSQIENNPLSKHKSLKVAKRVQVPFTAKEINAVLENMAGGQNFEACRN 138 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251 RL E L +G+R ++ + + K V + ++ + Sbjct: 139 RLLVELLYSTGMRRAELISIQEVDVNCADQTIKVVGKRNKERYVPILSSVLQTIKEYQGL 198 Query: 252 KETFFINNDKQKMNATQ-------FSIWFKAK--ATKAGVNKSAHGVRKFSATISADAGA 302 K T + + + + + V KS H +R AT + GA Sbjct: 199 KATIDGGSGFFLITSKGNKLYETLVYRIINSYFSKISSKVKKSPHILRHSFATHLLNEGA 258 Query: 303 TAHELMATYGWKTVDQAETYTK 324 + + G ++ + YT Sbjct: 259 DLNSVKELLGHSSLASTQVYTH 280 >gi|257458301|ref|ZP_05623450.1| tyrosine recombinase XerD [Treponema vincentii ATCC 35580] gi|257444328|gb|EEV19422.1| tyrosine recombinase XerD [Treponema vincentii ATCC 35580] Length = 297 Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats. Identities = 40/276 (14%), Positives = 86/276 (31%), Gaps = 27/276 (9%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY----RKITTKHIRSGVESRKHTPSSA 133 Y SA A + ++ + ++ G T + Sbjct: 12 YLISAEAR--AQLTAKTYINTMRLFQQQLGSERLIEDASADDCIGFLLARAEEGITGRTL 69 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--- 190 + ++R +++ + A NP +E P+R+ R +++ + + + Sbjct: 70 AKDQAALRSFYRFLQLENVRADNPAEQLESPRREKNLPRALELDEVDKLLAAIPLDTPNG 129 Query: 191 -QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMT 248 + R FE + +GLR S++ ++ + N K G V + L + Sbjct: 130 IRDRALFELIYSAGLRVSEAVTLSLEDIFFNEQLLKVRGKGGKERIVPFGAQAEERLTVY 189 Query: 249 PIGKET----------------FFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKF 292 F+N+ +++ + +GV H +R Sbjct: 190 LKTARPLLLKPAHSENTETTGAVFLNHHGERLTRKGIWKRLQEIEQLSGVTTKIHTLRHS 249 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 AT GA + G ++ + YT D+ Sbjct: 250 YATHLLAGGADLRSVQCLLGHASIATTQIYTHIEDK 285 >gi|94972396|ref|YP_595615.1| integrase [Lawsonia intracellularis PHE/MN1-00] gi|94731933|emb|CAJ53922.1| Integrase [Lawsonia intracellularis PHE/MN1-00] Length = 383 Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats. Identities = 60/377 (15%), Positives = 117/377 (31%), Gaps = 39/377 (10%) Query: 4 SLRLPP--FVTKER-TRHG--KIIY--YFRKGHGRRIRLPYPHESTFIPAYMS------- 49 R P ++ + R +HG K Y Y R G + I P ES+ + A + Sbjct: 8 KTRYPGVYYIFQRRLDKHGVEKTFYILYRRCGEKKLIEEPVGRESSGMTAATANNIRGLR 67 Query: 50 ----ALTGSTPKREYINSPRKKPTTLKWLISEY-RKSAHWGSLA-VNSRISFESYFDQII 103 L+ +++ + + TL+ + +Y + SL SR+ + S Sbjct: 68 AIGKELSNVEKRKKEKEKQQNQKVTLQTIWDKYQLIYSEKKSLKQDISRVKYLSDLMHKS 127 Query: 104 RKSGDF-DYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 D + K + + P+S L ++ L + +++ L Sbjct: 128 PDILTTNDIDTLRKKLTLTKSSKGGASLSPASIKHILVLLKRLINFGIQRNLCIKPQNLY 187 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ--PRLAFEFLLYSGLRCSDSCRAGVQHLQ 218 ++ PK + +K ++ L +G+R S Sbjct: 188 IDMPKVDNQKTEILSKNQLKNLLLALDAEPNQSDVAFIRLALVTGMRKSALLALKWSDCD 247 Query: 219 NNIFSIK----TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274 I K G + + + +L P G F T K Sbjct: 248 FENNIITLSGNYAKKGKTDYIPMNNSAKSILLSIPKGNSDFIFATRNGTKRTTYNQRLIK 307 Query: 275 AKATKAGVNKSA---HGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADRIR 330 KA + K HG+R A+ A +G + + +T + Y Sbjct: 308 RIKEKAKLPKDFRPLHGLRHNFASRLASSGKVDLYTIQRLLTHETPAMTQRYAH------ 361 Query: 331 LGIKNSRRISSVVDSDD 347 L ++ ++++D + Sbjct: 362 LHNDALKKAAAIIDDEF 378 >gi|310818587|ref|YP_003950945.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1] gi|309391659|gb|ADO69118.1| Phage integrase family protein [Stigmatella aurantiaca DW4/3-1] Length = 395 Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats. Identities = 53/395 (13%), Positives = 106/395 (26%), Gaps = 64/395 (16%) Query: 10 FVTKERTRHGKII--YY----FRKGHGRRIRLPYP---HESTFIPAYMSALTGSTPKREY 60 + + +T+ GK+ ++ ++ GR R+ + Y + + + Sbjct: 4 RLRQWKTQEGKVQEAWWVDVKYQHPSGRVERIRKASPINTRRGAEEYERQIRHALLTGTF 63 Query: 61 INSPRKKPT-TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKH 118 TL + + + + +S ++ + D +I G+ I Sbjct: 64 GKENGAGRVLTLGEFVPRFLTYSENNN-KHSSVVTKQQILDDHLIPAFGNMPLDAIGPAE 122 Query: 119 IRSGVESRKHTPS-----------------------------SAIQFLTSMRVLFKWAVR 149 I + + PS S LT + L A Sbjct: 123 IEDFKAAMRKKPSGARARKETPTRAALLKRKGSGAVKLLSLKSINNVLTVLHKLLALAQE 182 Query: 150 QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209 Q + P KT+ + + + + R L +GLR + Sbjct: 183 QGVLQHVP----RVKLFKTDKPAFDFLSFEEAERMSNAAEPEWRTLILVALKTGLRLGEL 238 Query: 210 CRAGVQHLQ-----------NNIFSIKTQKTGTIITVELPDGFMKLLAMTPI-GKETFFI 257 L + K G TV+LP ++ L F Sbjct: 239 IGLQWADLDLQRGKLNVRRTIWRDVVGLPKGGRERTVDLPTSTVEALKAHRHLCGPYVFC 298 Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNK-----SAHGVRKFSATISADAGATAHELMATYG 312 D + + A +AGV++ H +R + A G + G Sbjct: 299 QTDGRPLTAGMTKHPLLRALRRAGVSRPEGSIGWHDLRHTYGSHLAMRGVALKVIQELMG 358 Query: 313 WKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347 T++ Y + R + + + Sbjct: 359 HATIEMTMRYAHLSPEAR--ESAVQELDRPIPQPR 391 >gi|290474039|ref|YP_003466913.1| integrase [Xenorhabdus bovienii SS-2004] gi|289173346|emb|CBJ80123.1| Integrase [Xenorhabdus bovienii SS-2004] Length = 354 Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats. Identities = 46/324 (14%), Positives = 90/324 (27%), Gaps = 24/324 (7%) Query: 15 RTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 + +GK + Y +GRRIR + + I L + K ++ L Sbjct: 5 KQPNGKWLVELYPNGRNGRRIRKQFTTKGEAIACERHILDETVEKP--WLGEKQDKRLLS 62 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFD------QIIRKSGDFDYRKITTKHIRSGVESR 126 LI + ++ L+ +F + + + + K + + Sbjct: 63 ELIDIWYRAHGIT-LSDGEHRKKRMFFACKEMDHPFVTEFDNKLFSIYREKRLNGYADKL 121 Query: 127 KH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 K PS+ L R +F R L R E + Sbjct: 122 KPVAPSTVNNELAYFRAMFNELHRLGEWKAGNPLKNIRAFNTGEKEMAFLSNQQIITLLN 181 Query: 186 WSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242 + S+ + + + L +G R S++ + + K TV + Sbjct: 182 FCAKSRAKDLLIIVKIALSTGARWSEAAGLTDSQITPYKITFTKTKGKRNRTVPITKELY 241 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGA 302 + + F K + ++S+H +R A+ +G Sbjct: 242 DEIPKRKGKLFSSC---------YNAFRTAVKQAGIELPSHQSSHVMRHTFASHFMMSGG 292 Query: 303 TAHELMATYGWKTVDQAETYTKGA 326 L G + Y A Sbjct: 293 NIIVLQRILGHTDIKMTMRYAHFA 316 >gi|89890184|ref|ZP_01201695.1| site-specific integrase/recombinase XerD protein [Flavobacteria bacterium BBFL7] gi|89518457|gb|EAS21113.1| site-specific integrase/recombinase XerD protein [Flavobacteria bacterium BBFL7] Length = 295 Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats. Identities = 35/275 (12%), Positives = 90/275 (32%), Gaps = 23/275 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSGVE---SRK 127 + Y + + N+ ++E +Q D + + + IR+ + ++ Sbjct: 3 LKSYLDYLSFEKKYSQNTITAYEKDLEQFGLFLMDEYDLEIQNASYPIIRTWLALLLDQQ 62 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + + + + +++ FK+ + E + +P + + K P++K+++QQ + Sbjct: 63 LSSRTVNRKVAALKSYFKFLLLIEQIDYHPLSNHKSLKVSKNIQIPFSKQEVQQILNASY 122 Query: 188 -----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVEL---- 237 E + L E +G+R + ++++ + K + + Sbjct: 123 DSEDFESVRDLLIIELFYVTGVRREELINLRIENVNLLSRTIKVVGKRNKERLIPMLESV 182 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA------GVNKSAHGVRK 291 L + + + + V S H +R Sbjct: 183 KFKVEAYLLLKESIETDKRPELFVTRKGDKLYPGLVYRIIKSYFSKVSQKVKTSPHILRH 242 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 AT D GA + + G ++ + YT + Sbjct: 243 SFATHLLDEGADLNAVKELLGHASLASTQVYTHSS 277 >gi|114049118|ref|YP_739668.1| tyrosine recombinase XerC [Shewanella sp. MR-7] gi|123131002|sp|Q0HQJ4|XERC_SHESR RecName: Full=Tyrosine recombinase xerC gi|113890560|gb|ABI44611.1| tyrosine recombinase XerC [Shewanella sp. MR-7] Length = 299 Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats. Identities = 31/275 (11%), Positives = 90/275 (32%), Gaps = 20/275 (7%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIRSGVESRKH---TP 130 Y +S L+ ++ ++ + + D + +H + + +P Sbjct: 12 FETYMQSE--RQLSAHTVRNYMYELQRGSELLPEGVDLLNVGREHWQQVLAKLHRKGLSP 69 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 S +L++++ ++ +R + +NP + PK+ + + + + Sbjct: 70 RSLSLWLSAIKQWGEFLLRSGVIELNPAKGLSAPKQAKPLPKNIDVDSISHLLAIEGNDP 129 Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA 246 + + E SGLR ++ + +Q + ++ K V + ++ ++ Sbjct: 130 LTLRDKAIMELFYSSGLRLAELAALDLSSVQYDQHEVRVLGKGNKERIVPVGRYAIEAIS 189 Query: 247 MTPIGKETFFINND-------KQKMNATQFSIWFKAKAT--KAGVNKSAHGVRKFSATIS 297 ++ ++ ++++ + H +R AT Sbjct: 190 AWLKCRKQISCEDNALFVTEKGKRLSHRSIQARMSKWGQEQALSMRVHPHKLRHSFATHM 249 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 ++ A + G + + + YT D L Sbjct: 250 LESSADLRAVQELLGHENLSTTQIYT-SLDFQHLA 283 >gi|296115017|ref|ZP_06833660.1| integrase/recombinase XerD [Gluconacetobacter hansenii ATCC 23769] gi|295978435|gb|EFG85170.1| integrase/recombinase XerD [Gluconacetobacter hansenii ATCC 23769] Length = 304 Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats. Identities = 49/299 (16%), Positives = 95/299 (31%), Gaps = 28/299 (9%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTPS 131 + + + A+N+ ++ D + + + + + + + Sbjct: 6 VDAFLEMLAAERGAALNTLKAYRRDLDDLGTALAVEGASLPQASARQLGAYLSGLAQAGL 65 Query: 132 SAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 SA + L+ +R + + VR+ NP +E P+ R ++ D+ + Sbjct: 66 SARTQARRLSCLRQYYLFLVREGRRPDNPASMLEAPRLGATLPRFLSEGDVDALLAACVA 125 Query: 189 GSQP-----------RLAFEFLLYSGLRCSDSCR-AGVQHLQNNIFSIKTQKTGTIITVE 236 + R A E L SGLR S+ + + K G V Sbjct: 126 RADAGAHEVRRMLVARTALEILYASGLRISELLSLPRAALERTTGMLLVRGKGGRERMVP 185 Query: 237 LPDGFMKL---LAMTPIGKETFFINNDKQK---MNATQFSIWFKAKATKAGVN---KSAH 287 L L + F+ + M F A KAG++ S H Sbjct: 186 LSSRARDAADELMRMDRPLRSMFLFPGRNPLRAMTRQGFDRILHDVALKAGLDPQRLSPH 245 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSRRISSVVDS 345 +R AT GA L G + + YT +R++ +++ +S + Sbjct: 246 VLRHSFATHLLSHGADLRALQVLLGHADITTTQIYTHVLTERLQEALRHHHPLSEHAPA 304 >gi|218892832|ref|YP_002441701.1| putative bacteriophage integrase [Pseudomonas aeruginosa LESB58] gi|218773060|emb|CAW28872.1| putative bacteriophage integrase [Pseudomonas aeruginosa LESB58] Length = 338 Score = 112 bits (281), Expect = 7e-23, Method: Composition-based stats. Identities = 42/313 (13%), Positives = 91/313 (29%), Gaps = 18/313 (5%) Query: 19 GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78 G+ + G+R R + + + ++ N ++ L LI + Sbjct: 9 GRWLADVEPIKGKRFRKR-FKTKGEAQRFEAMVRTKHARQREWNPVQQDKRLLSELIERW 67 Query: 79 RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQ 135 ++ S ++ I + GD ++ TT + R P S Sbjct: 68 Y---ELHGHSITSGRRRKNLLLLIASRLGDPVGQRFTTADLVAFRKRELEEGALPRSINV 124 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG----SQ 191 + ++ +F R + L +P + + + + +D Sbjct: 125 RYSYLKTVFTELRRLGDIDYPNPLDRLKPLKPQQSVVSFLSKDQVAVLVSALRDYSTFPH 184 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251 L E L +G R S++ + +++ K+ + +V + L G Sbjct: 185 LALISEVCLATGARWSEAQGLTLPMVRDGSVVFSNTKSKRVRSVPISTDLQARLEKYFAG 244 Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATY 311 + F F+ K + H +R A+ G L Sbjct: 245 RNRF-------PSCREAFARMVKRCGIVLPRGQCTHVLRHTFASHFMMNGGNILALKEIL 297 Query: 312 GWKTVDQAETYTK 324 G +++ Y Sbjct: 298 GHSSLNMTMRYAH 310 >gi|240170588|ref|ZP_04749247.1| site-specific tyrosine recombinase XerC [Mycobacterium kansasii ATCC 12478] Length = 302 Score = 112 bits (281), Expect = 7e-23, Method: Composition-based stats. Identities = 39/294 (13%), Positives = 90/294 (30%), Gaps = 28/294 (9%) Query: 72 KWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKH 128 ++ E+ + ++R ++ + D ++ +R+ + S Sbjct: 6 DAILEEFDDYLALQCGRSAHTRRAYLGDLRLLFAFLADRGSALETLSLPLLRAWLASASG 65 Query: 129 TP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 ++ + ++++ WAVR+ + +P ++ PK ++ + Sbjct: 66 AGVARTTLARRTSAVKAFTAWAVRRGLLTGDPAARLQVPKAHRTLPAVLRQDQALAAMTA 125 Query: 186 WSEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE 236 G + RL E L +G+R S+ C + + ++ K TV Sbjct: 126 AKSGAEQGDPLALRDRLIVELLYATGIRVSELCGLDIDDVDTGHRVVRVLGKGNKQRTVP 185 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV------------NK 284 + L + + V + Sbjct: 186 YGRPAAEALQAWLADGRPALVTAESGPALLLGARGRRLDARQARTVVHQTVAAVNGAPDI 245 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337 HG+R +AT + GA + G ++ + YT A +R+R + Sbjct: 246 GPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVNRLRAVHDQAH 299 >gi|206975126|ref|ZP_03236040.1| DNA integration/recombination/invertion protein [Bacillus cereus H3081.97] gi|217959606|ref|YP_002338158.1| DNA integration/recombination/invertion protein [Bacillus cereus AH187] gi|229138832|ref|ZP_04267413.1| DNA integration/recombination/invertion protein [Bacillus cereus BDRD-ST26] gi|206746547|gb|EDZ57940.1| DNA integration/recombination/invertion protein [Bacillus cereus H3081.97] gi|217066212|gb|ACJ80462.1| DNA integration/recombination/invertion protein [Bacillus cereus AH187] gi|228644748|gb|EEL00999.1| DNA integration/recombination/invertion protein [Bacillus cereus BDRD-ST26] Length = 369 Score = 112 bits (281), Expect = 7e-23, Method: Composition-based stats. Identities = 55/366 (15%), Positives = 114/366 (31%), Gaps = 44/366 (12%) Query: 17 RHGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + G G+R + + T A + + + TL Sbjct: 7 KRGNKYCIVIDIGPDPETGKRRQKWFSGYKTKKEA-QADVAKKITELNEGTFVEPSKITL 65 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 K + ++ + + ++ S+ S II G K+ HI+ +S Sbjct: 66 KDYLVQWLEIKKMC-VEKSTFSSYSSNITYHIIPSIGMIALHKLNVIHIQKCYKSALDNG 124 Query: 131 SSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S L ++ AV+Q ++ NP VE PK++ I+ WT+E++++F Sbjct: 125 VSNNSILLLHRILKTALNLAVKQNIISRNPADFVEIPKKEKTSIQTWTEEEVKRFLLHSQ 184 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--------------TGTII 233 E S+ +A+ + +G+R + Q + ++ + + Sbjct: 185 E-SRYHIAYLIAITTGMRLGEVLGLRWQDVDFRNHTVTINQTVGGDDKVKNTAKTNASKR 243 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMN--------------ATQFSIWFKAKATK 279 T+ +P ++ + I + + F F + Sbjct: 244 TIPVPVETIEAIKKHRIQINKEKLRMGSAYQDLDLINCNESGGVLKRDAFRRKFYKEINN 303 Query: 280 AGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGIKNSR 337 A V K H +R ATI G + G + Y+ + + + Sbjct: 304 AKVKKIKIHDLRHTHATILLKQGVNPKIISERLGHTDISLTLRVYSHVLPN--MQEEAVK 361 Query: 338 RISSVV 343 + Sbjct: 362 NFGKSI 367 >gi|225853465|ref|YP_002733698.1| site-specific tyrosine recombinase XerD [Brucella melitensis ATCC 23457] gi|256045632|ref|ZP_05448510.1| site-specific tyrosine recombinase XerD [Brucella melitensis bv. 1 str. Rev.1] gi|256112356|ref|ZP_05453277.1| site-specific tyrosine recombinase XerD [Brucella melitensis bv. 3 str. Ether] gi|225641830|gb|ACO01744.1| tyrosine recombinase XerD [Brucella melitensis ATCC 23457] gi|326410027|gb|ADZ67092.1| site-specific tyrosine recombinase XerD [Brucella melitensis M28] gi|326539743|gb|ADZ87958.1| tyrosine recombinase XerD [Brucella melitensis M5-90] Length = 307 Score = 112 bits (281), Expect = 7e-23, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 83/289 (28%), Gaps = 33/289 (11%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR---K 127 I + + A N+ S+ + + + + T HIR +++ Sbjct: 6 AIENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKGVNLAEAETGHIRMTLDTMAAQG 65 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185 P+S + L+++R F++ + + +P + PK++ + + E++ + Sbjct: 66 FAPTSQARRLSALRQFFRFLYSEGFRQDDPTGILYAPKKQKPLPKIMSVENVGKLLDRAA 125 Query: 186 -----------WSEGSQPRLAFEFLLYSGLRCSDSC-------RAGVQHLQNNIFSIKTQ 227 + + E L +GLR S+ R + L K + Sbjct: 126 LEANEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKGSKDR 185 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---- 283 L + G + + F + Sbjct: 186 MVPLSRKARDALQKFLTLRDSLPGSDDNPWLFPAFSESGHLARQVFARELKGLAARAGLA 245 Query: 284 ---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 S H +R A+ GA + G + + YT + Sbjct: 246 ASSVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEER 294 >gi|170701053|ref|ZP_02892031.1| integrase family protein [Burkholderia ambifaria IOP40-10] gi|170134033|gb|EDT02383.1| integrase family protein [Burkholderia ambifaria IOP40-10] Length = 332 Score = 112 bits (281), Expect = 7e-23, Method: Composition-based stats. Identities = 35/328 (10%), Positives = 93/328 (28%), Gaps = 19/328 (5%) Query: 20 KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79 + R +P + A+ + ++++ + TTL L+ +Y Sbjct: 15 RWQAKVRLKGFPAQSKSFP-TKVQAEDWARAVETEMRRGTFVDTAAARETTLGDLLQKYA 73 Query: 80 KSAHWGSLA-VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQF 136 + + +S + IT + + R + S+ + Sbjct: 74 ERVSPTKKSGAGEAKRIQSMLKWF---LCKYAVVNITPAVLAEWRDERLQSVSGSTVNRE 130 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ----FKSFWSEGSQP 192 L + +F A+ + + + + K R E ++ ++ + Sbjct: 131 LNLLSHVFSTAMIEWDIHLPVNPVSRIRRPKHNKPRNRRTEGGEESLLLYECRKARNKHL 190 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252 A + +G+R S+ ++ + A Sbjct: 191 YPAVLLAIETGMRRSEVVGIEWPNIDLKRR--VLWLPDSKNGEGRAVALSTRAAQALAAI 248 Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATY 311 T + ++ +A ++ H +R + + + G E+ + Sbjct: 249 ATDRNGPVFPGLTVDAIKCAYRRARKRAKIDGLRFHDLRHEATSRLFEKGLNPMEVASIT 308 Query: 312 GWKTVDQAETYTKGADRIRLGIKNSRRI 339 G KT+ + YT ++++ Sbjct: 309 GHKTLSMLQRYTHL-----RAEDLAKKL 331 >gi|283852866|ref|ZP_06370128.1| integrase family protein [Desulfovibrio sp. FW1012B] gi|283571776|gb|EFC19774.1| integrase family protein [Desulfovibrio sp. FW1012B] Length = 319 Score = 112 bits (281), Expect = 7e-23, Method: Composition-based stats. Identities = 45/288 (15%), Positives = 85/288 (29%), Gaps = 31/288 (10%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVESRKH 128 + Y + + ++ Q +T + R + Sbjct: 18 AAAYLDHLRVEKGYSPATLAAYAEDLAQFEESLAGRGLTLAAPGAVTLEAARGFLAELHR 77 Query: 129 TP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW---------TK 176 SS + L+++R LF + R++ V +P ++ PK + T Sbjct: 78 RRVAKSSMGRKLSALRGLFTFLRRKKRVTGDPLAGLKNPKTDKRQPKALNVDEAVALVTP 137 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------- 229 E + E L SGLR S++ V L + ++ Sbjct: 138 GPESPAADGSREACRDLALAELLYGSGLRVSEAMTLDVDDLDLSQGIVRVMGKGGKERLA 197 Query: 230 ---GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284 + + FF+ +++ Q + A A AG+ + Sbjct: 198 PLSDAARVRLGEYARRRAEFAPAPREPAFFLGARGGRLDRRQAARIIDALARGAGLARHA 257 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R AT ++GA + G + + YT D RL Sbjct: 258 HPHMLRHSFATHLLESGADMRSVQELLGHARLSTTQRYTH-LDLARLM 304 >gi|83748651|ref|ZP_00945669.1| Integrase/recombinase (XerC/CodV family) [Ralstonia solanacearum UW551] gi|207741931|ref|YP_002258323.1| tyrosine recombinase xerc 1 protein [Ralstonia solanacearum IPO1609] gi|83724695|gb|EAP71855.1| Integrase/recombinase (XerC/CodV family) [Ralstonia solanacearum UW551] gi|206593317|emb|CAQ60244.1| tyrosine recombinase xerc 1 protein [Ralstonia solanacearum IPO1609] Length = 329 Score = 112 bits (281), Expect = 7e-23, Method: Composition-based stats. Identities = 50/298 (16%), Positives = 89/298 (29%), Gaps = 41/298 (13%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGVESRKH- 128 I+ Y + L+ ++ ++ + R + D ++ HIRS + Sbjct: 20 IAAYLDVLKFERQLSPHTLENYTRELAVLQRLGARFATGIDLTRLLPHHIRSMIAHLHGN 79 Query: 129 --TPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + S + L+ R +KW A+R+ V NP V PK + + E Sbjct: 80 GLSGRSIARALSVWRGWYKWLALREAAVTANPVDGVRAPKSPKRLPKALSVEQAVALMEQ 139 Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 E + R E GLR S+ ++H++ ++ V + Sbjct: 140 LPGDDPETIRDRAVNELFYSCGLRLSELVGLDLRHVKAGDYASAGWLDLEAREVMVLGKG 199 Query: 242 MKLLAMTPIGKETFFINNDKQ-------------------------KMNATQFSIWFKAK 276 K + K + ++ Q I K Sbjct: 200 NKYRTVPVGSKAAEALAAWLAARPQLARPDAAPEDAHALFLSARGKRLTQRQIQIRMKRN 259 Query: 277 ATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 A AGV H +R AT + + G ++ + YT D L Sbjct: 260 AIAAGVPADVHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYT-SLDFQHLA 316 >gi|326333662|ref|ZP_08199899.1| putative tyrosine recombinase XerC [Nocardioidaceae bacterium Broad-1] gi|325948568|gb|EGD40671.1| putative tyrosine recombinase XerC [Nocardioidaceae bacterium Broad-1] Length = 320 Score = 112 bits (281), Expect = 7e-23, Method: Composition-based stats. Identities = 39/295 (13%), Positives = 88/295 (29%), Gaps = 29/295 (9%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSGVESRK 127 L+ +Y + L+ ++ ++ ++ +G D I + +RS + ++ Sbjct: 23 AALLGDYERHLSAERGLSDHTVRAYLGDVRSLLDHAGRMGRTDPEGIDLRTLRSWLAKQQ 82 Query: 128 HTPSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI--------RPWTK 176 T S + T+ RV W VR ++ ++ PK Sbjct: 83 TTGHSRTTLARRATAARVFCGWLVRTGRAQVDAGAALGSPKAHRTLPPVLRPDEVESLIA 142 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITV 235 + + + G + E L +G R + + + ++ K V Sbjct: 143 AAIAAAEDGTAVGMRDIAVLEMLYATGSRVGELVGLDLDDVDYERRVVRVLGKGRKERMV 202 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAG--VN 283 + L + + + + + Sbjct: 203 PFGGPAARALDRWIVRGRPQLVTESSGPALFLGARGGRLDQRAVRTLVHRRLADVPGAPD 262 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSR 337 HG+R +AT + GA + G ++ + YT +DR+R + + Sbjct: 263 LGPHGLRHSTATHLLEGGADLRSVQELLGHASLATTQIYTHVSSDRLRKAYRQAH 317 >gi|228470279|ref|ZP_04055183.1| site-specific recombinase, phage integrase family/ribosomal subunit interface protein [Porphyromonas uenonis 60-3] gi|228308022|gb|EEK16897.1| site-specific recombinase, phage integrase family/ribosomal subunit interface protein [Porphyromonas uenonis 60-3] Length = 403 Score = 112 bits (281), Expect = 7e-23, Method: Composition-based stats. Identities = 40/301 (13%), Positives = 106/301 (35%), Gaps = 26/301 (8%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGVE 124 L+ + + + + + + ++ + + + ++ +R+ + Sbjct: 6 LEQTLDAFMEYLRLERNASPLTLTTYRPAIESYMESALELATDEWRPSDADRDLVRNWIM 65 Query: 125 SRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + + ++ + L+++R +K+ + +V NP ++ PKR+ T+ +++ Sbjct: 66 QQMDDELSSTTVNKNLSAVRSFYKYLQLRGHVTSNPTRYLKGPKREHTLPSFLTQAQIEE 125 Query: 182 FKSFWSEGS------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIIT 234 + + + RL E + +GLR ++ Q + S++ Sbjct: 126 ALATIPIETDNFLSVRDRLIIETIYQTGLRRAEVASLKTQQVDLTAMSLRVVGKGRKERI 185 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMN--------ATQFSIWFKAKATKAGVNKS- 285 V + + ++ + + A + + KA + G+ + Sbjct: 186 VPFGTDLREKMQDYITLRDQKVGTSQYFFVTLECRPLSGADVYQVVHKALSVVPGLPRRG 245 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISSVVD 344 AH +R AT +AGA + G ++ YT ++++ R S V Sbjct: 246 AHTLRHSFATEMLNAGAPITSIKELLGHSNLETTTRYTHTSFEQLKQLYHAHPRAQSQVS 305 Query: 345 S 345 S Sbjct: 306 S 306 >gi|299136538|ref|ZP_07029721.1| integrase family protein [Acidobacterium sp. MP5ACTX8] gi|298601053|gb|EFI57208.1| integrase family protein [Acidobacterium sp. MP5ACTX8] Length = 381 Score = 112 bits (281), Expect = 7e-23, Method: Composition-based stats. Identities = 50/365 (13%), Positives = 108/365 (29%), Gaps = 42/365 (11%) Query: 11 VTKERTRHGKIIYYFRKGH----GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 V + ++G ++ FR GRR+ + A +A+ +T Y + R Sbjct: 6 VIQMTRKNGPGVWQFRWSDKDLNGRRVYHRQVIGTIDQYADEAAVRHATLPLIYEVNSRS 65 Query: 67 K-----PTTLKWLISEYRKSAHWGS----LAVNSRISFESYFDQ-IIRKSGDFDYRKITT 116 T+ L + + + S +V + ++ Y + I + G +I Sbjct: 66 PHDHVGAITVDQLCEHFEQ-WEFRSSISLRSVATIKTYRGYIRRWIRPQWGSRKLDEIKA 124 Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + + + S S + + + +LF A R E NP V + ++ T Sbjct: 125 TDVEAWLRSLNLARGSRSKLRSILSILFNHACRHELFDHNPIRFVRQGAKRLHTPDVLTG 184 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL------------QNNIFSI 224 +++ S + R +GLR + + + Sbjct: 185 SEIK--LLVESLPLRERTLVLLAASTGLRQGEIFGLKWRDVDFEHGELNVIRSMVCGVVG 242 Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ----------KMNATQFSIWFK 274 + + V L L ++ + + Sbjct: 243 ACKTESSQRPVPLHHRLAAALLAWRPNCNFKTQDDWVFASRLHNGRKPYWGPVILRKYIQ 302 Query: 275 AKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRL 331 A K G++K H R+ AT+ G + ++ + YT+ + Sbjct: 303 PAAQKLGIHKQIGWHTFRRTYATLLRSLGVEFKVMQELMRHSSLRTTLDVYTQAVGPAKR 362 Query: 332 GIKNS 336 + + Sbjct: 363 AAQAA 367 >gi|255534430|ref|YP_003094801.1| Integrase, site-specific recombinase [Flavobacteriaceae bacterium 3519-10] gi|255340626|gb|ACU06739.1| Integrase, site-specific recombinase [Flavobacteriaceae bacterium 3519-10] Length = 296 Score = 112 bits (281), Expect = 7e-23, Method: Composition-based stats. Identities = 37/271 (13%), Positives = 90/271 (33%), Gaps = 22/271 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRKHT 129 + + + + ++ S+ + +Y ++ K IR+ + + Sbjct: 2 VDRFLEYIAVEKRYSPHTLTSYRRDLEDFSVFLLRTEAHHNYVEVDKKIIRNFMAALGEK 61 Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 S + L+++R + + ++ V +P +++ K E P++ ++M + Sbjct: 62 AIAKRSINRKLSTLRSFYLFLLKIGEVKTSPLANIQTLKFYAEKQVPFSPDEMNDLQKEE 121 Query: 187 SEGSQPR----LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 + + L E L +G+R ++ + H+ +K V + D Sbjct: 122 FQPLKTNFLKELIIETLYQTGMRRAELTGLLLDHVDLGKKELKITGKGNKQRIVPVSDDL 181 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQ-------FSIWFKAKA--TKAGVNKSAHGVRKF 292 L ++ ++A + KS H +R Sbjct: 182 CAQLEQYLEFRKPLKEYQMYFFVSAKGKKLNDKFVYSAVNTYLSLVTSKKKKSPHILRHS 241 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYT 323 AT + GA ++ G K++ + YT Sbjct: 242 FATHVLEEGAEISKVKLLMGHKSLASTQVYT 272 >gi|152981264|ref|YP_001354893.1| site specific integrase/recombinase protein [Janthinobacterium sp. Marseille] gi|151281341|gb|ABR89751.1| site specific integrase/recombinase protein [Janthinobacterium sp. Marseille] Length = 319 Score = 112 bits (281), Expect = 7e-23, Method: Composition-based stats. Identities = 49/298 (16%), Positives = 90/298 (30%), Gaps = 39/298 (13%) Query: 73 WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRK 127 + Y + LA + +S+ +++ + +T IR Sbjct: 8 AYLDGYLDNLISQRQLAPLTTVSYRRDLLELLAFATASDSKATLTGVTHFQIRKFAAQLH 67 Query: 128 HTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 S + L++ R F W Q + NP ++ PKR + +D + + Sbjct: 68 AQGLNARSIARKLSAWRGFFTWLSEQNAITSNPVDGIKAPKRSKPLPKALAADDAVRLVA 127 Query: 185 FWSEGSQP--------RLAFEFLLYSGLRCSDSCRAGV------------QHLQNNIFSI 224 + G FE L SGLR S+ V + + Sbjct: 128 EHAPGKSADSAMQLCNHAMFELLYSSGLRVSELVGLDVRYAQEARYTSAGWIDFDAHEVM 187 Query: 225 KTQKTGTIITVELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAK 276 T K + TV + M L + F++ +++A + KA Sbjct: 188 VTGKGNKMRTVPIGQAAMDALKAWLAVRDTLVKLDPHPLFLSERGTRVSARVVQLRLKAH 247 Query: 277 ATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 G+ H +R A+ + + G ++ + YT D RL Sbjct: 248 GQAIGLPTDVHPHVLRHSFASHVLQSSGDLRAVQEMLGHASIAATQIYT-SLDFQRLA 304 >gi|148559822|ref|YP_001259843.1| site-specific tyrosine recombinase XerD [Brucella ovis ATCC 25840] gi|163844051|ref|YP_001628455.1| site-specific tyrosine recombinase XerD [Brucella suis ATCC 23445] gi|254700665|ref|ZP_05162493.1| site-specific tyrosine recombinase XerD [Brucella suis bv. 5 str. 513] gi|254707447|ref|ZP_05169275.1| site-specific tyrosine recombinase XerD [Brucella pinnipedialis M163/99/10] gi|254709011|ref|ZP_05170822.1| site-specific tyrosine recombinase XerD [Brucella pinnipedialis B2/94] gi|256030536|ref|ZP_05444150.1| site-specific tyrosine recombinase XerD [Brucella pinnipedialis M292/94/1] gi|256059999|ref|ZP_05450181.1| site-specific tyrosine recombinase XerD [Brucella neotomae 5K33] gi|256158528|ref|ZP_05456422.1| site-specific tyrosine recombinase XerD [Brucella ceti M490/95/1] gi|256253942|ref|ZP_05459478.1| site-specific tyrosine recombinase XerD [Brucella ceti B1/94] gi|256370430|ref|YP_003107941.1| tyrosine recombinase [Brucella microti CCM 4915] gi|260169442|ref|ZP_05756253.1| site-specific tyrosine recombinase XerD [Brucella sp. F5/99] gi|148371079|gb|ABQ61058.1| tyrosine recombinase XerD [Brucella ovis ATCC 25840] gi|163674774|gb|ABY38885.1| tyrosine recombinase XerD [Brucella suis ATCC 23445] gi|256000593|gb|ACU48992.1| tyrosine recombinase [Brucella microti CCM 4915] Length = 307 Score = 112 bits (281), Expect = 7e-23, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 84/289 (29%), Gaps = 33/289 (11%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR---K 127 I + + A N+ S+ + + + + T HIR +++ Sbjct: 6 AIENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKGVNLAEAETGHIRMTLDTMAAQG 65 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185 P+S + L+++R F++ + + +P ++ PK++ + + E++ + Sbjct: 66 FAPTSQARRLSALRQFFRFLYSEGFRQDDPTGILDAPKKQKPLPKIMSVENVGKLLDRAA 125 Query: 186 -----------WSEGSQPRLAFEFLLYSGLRCSDSC-------RAGVQHLQNNIFSIKTQ 227 + + E L +GLR S+ R + L K + Sbjct: 126 LEANEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKGSKDR 185 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---- 283 L + G + + F + Sbjct: 186 MVPLSRKARDALQKFLTLRDSLPGSDDNPWLFPAFSESGHLARQVFARELKGLAARAGLA 245 Query: 284 ---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 S H +R A+ GA + G + + YT + Sbjct: 246 ASSVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEER 294 >gi|238763615|ref|ZP_04624575.1| Tyrosine recombinase [Yersinia kristensenii ATCC 33638] gi|238698093|gb|EEP90850.1| Tyrosine recombinase [Yersinia kristensenii ATCC 33638] Length = 263 Score = 112 bits (280), Expect = 7e-23, Method: Composition-based stats. Identities = 43/245 (17%), Positives = 81/245 (33%), Gaps = 17/245 (6%) Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 + G ++ + +RS V K SS L+++R W V Q + +NP Sbjct: 5 EQMGLAHWQTLDAAQVRSLVSRSKRAGLHSSSLALRLSALRSFLNWLVSQGVMQVNPAKG 64 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHL 217 V P+ + +++ + + R E + +GLR S+ +H+ Sbjct: 65 VSTPRSGRHLPKNIDVDEVDKLLDIDLNDPLAVRDRAMLEVMYGAGLRLSELVGMNCKHV 124 Query: 218 Q-NNIFSIKTQKTGTIITVELPDGFMKLLAMT-------PIGKETFFINNDKQKMNATQF 269 + K V + +K L + F+ N ++++A Sbjct: 125 DLASGEVWVMGKGSKERKVPIGKTAVKWLEHWLELRELFEPQDDAIFLANTGKRISARNV 184 Query: 270 SIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 F K GV + H +R AT ++ + G + + YT D Sbjct: 185 QKRFAEWGVKQGVSSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTH-LD 243 Query: 328 RIRLG 332 L Sbjct: 244 FQHLA 248 >gi|189501600|ref|YP_001957317.1| integrase family protein [Candidatus Amoebophilus asiaticus 5a2] gi|189497041|gb|ACE05588.1| integrase family protein [Candidatus Amoebophilus asiaticus 5a2] Length = 292 Score = 112 bits (280), Expect = 7e-23, Method: Composition-based stats. Identities = 37/268 (13%), Positives = 89/268 (33%), Gaps = 23/268 (8%) Query: 85 GSLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSGVESRKHTP---SSAIQFL 137 L+ ++ ++++ +Q+ + T+K +RS + S + + Sbjct: 13 KRLSSHTICAYQTDLNQLFSYLQTNFQIAELSHATSKLLRSWIMELAKQGLNNRSINRKI 72 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGSQP 192 S++ + + ++EY+ + + K K ++++ EG + Sbjct: 73 ASLKAFYGFLYKKEYIPSDITTQLTGLKVKKGLPIFLREQELLHLLDEHPFTDDFEGWRA 132 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIG 251 RL E L +G+R + + + +I+ K + LP + ++ Sbjct: 133 RLILELLYSTGIRLQELINLQDRDINFYDRTIRVLGKRNKERILPLPKHILPIIEGYLQQ 192 Query: 252 KE--------TFFINNDKQKMNATQFSIWFKAKATKA--GVNKSAHGVRKFSATISADAG 301 + FF+ + + K+ S H +R AT + G Sbjct: 193 RNTIIANAPAHFFVTTNNKPCYPMLIYKLVKSYLASYTQADRHSPHILRHTFATHLLNRG 252 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRI 329 A + G ++ + YT + Sbjct: 253 ADLQAIKELLGHTSLAATQVYTHNSMEK 280 >gi|152993870|ref|YP_001359591.1| phage integrase family site specific recombinase [Sulfurovum sp. NBC37-1] gi|151425731|dbj|BAF73234.1| site-specific recombinase, phage integrase family [Sulfurovum sp. NBC37-1] Length = 379 Score = 112 bits (280), Expect = 7e-23, Method: Composition-based stats. Identities = 49/377 (12%), Positives = 104/377 (27%), Gaps = 41/377 (10%) Query: 2 TPSLRLPPFVTKERTRHGKIIYY--FRKGHGRRI-----RLPYPHESTFIPAYMSALTGS 54 R+ + K G+IIY FR G+ R + Y S + Sbjct: 5 RKRERVATGIYKRIDAKGEIIYDINFRDEFGKNKFLKVGRKSDGVTVAYCKQYRSKIINM 64 Query: 55 TPKREYINSPRKKP-TTLKWLISEYRKSAHWGSLAV--NSRISFESYFDQIIRKSGDFDY 111 E +++ RKK T + +Y + + + + D I G Sbjct: 65 KYLGEDVSNIRKKSSITFDDITEDYFEYVKYADFKEPQSFANRYR---DHIKDSLGHLPV 121 Query: 112 RKITTKHIRSGVESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168 IT I + + K P++ + + F A+ +E NP Sbjct: 122 ESITKNDINNLIMLLKDKNLAPATIDRIRQQVSATFNVAIGKEKCRNNPASVSRVDSSSL 181 Query: 169 EGIRPWTKEDMQQFKSFWSEGS-----------QPRLAFEFLLYSGLRCSDSCRAGVQHL 217 + + + ++ E + L +G R + + + + Sbjct: 182 MRLNKKSINNARERYLSKDEANLLLSELKLRRFDVYFMALLALTTGARAGEILKIQYKDI 241 Query: 218 Q--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275 N ++ K G+ +++ +L ++ + + + Sbjct: 242 DLENRYINLVETKNGSSRKIKITSKVYDILNEIEFESPNKYLFAGSKHDHLQAIPNIYSI 301 Query: 276 KA----------TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 H +R A+ A G + G K ++ Y K Sbjct: 302 IVGELFNSELDSRDTKHRVCFHTLRHTFASWLAINGTPIFTIQKLMGHKDINMTLRYAKL 361 Query: 326 ADRIRLGIKNSRRISSV 342 + G++ + Sbjct: 362 SPDA--GVEAVNSLEEK 376 >gi|326203021|ref|ZP_08192887.1| integrase family protein [Clostridium papyrosolvens DSM 2782] gi|325986667|gb|EGD47497.1| integrase family protein [Clostridium papyrosolvens DSM 2782] Length = 329 Score = 112 bits (280), Expect = 7e-23, Method: Composition-based stats. Identities = 42/310 (13%), Positives = 107/310 (34%), Gaps = 47/310 (15%) Query: 73 WLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFD--------------------- 110 ++ ++ ++N+ + R Sbjct: 11 AVLRDFLNYMQTIKGKSINTIQVYFYDLRIFFRFLKIHRNIVDKNLEFDTIEITDIDIPL 70 Query: 111 YRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPK 165 + +T + + + R +T + + + S++ F + + + + + INP + +E PK Sbjct: 71 LKTVTLSDLYTYMSFVSNKRDNTSHARARKVASLKSFFNYLSTKAKLLDINPTIELESPK 130 Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220 R ++ ++ + +E + + L G+R S+ + ++++N Sbjct: 131 ILKRLPRYLNFDESKKLLTSVTEANHEYSVRDYAIITIFLNCGIRLSELVGINLYNIKDN 190 Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIW 272 + K G ++ L ++ + + FI+ Q+++ Sbjct: 191 TLT-VFGKGGKERSIPLNKACLQAIEDYMKIRPVNGLKDKSALFISRRNQRISKESVQKI 249 Query: 273 FKAKATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADR 328 K +AG++ S H +R +AT+ G L G +++ E YT D+ Sbjct: 250 VKRYIKEAGLDPQRYSTHKLRHTAATLMYKYGNVDIRALQEILGHESISTTEIYTH-LDQ 308 Query: 329 IRLGIKNSRR 338 +L + + Sbjct: 309 QQL-KEAVNK 317 >gi|207727540|ref|YP_002255934.1| tyrosine recombinase xerc 1 protein [Ralstonia solanacearum MolK2] gi|206590777|emb|CAQ56389.1| tyrosine recombinase xerc 1 protein [Ralstonia solanacearum MolK2] Length = 329 Score = 112 bits (280), Expect = 7e-23, Method: Composition-based stats. Identities = 50/298 (16%), Positives = 90/298 (30%), Gaps = 41/298 (13%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGVESRKH- 128 I+ Y + L+ ++ ++ + R + D ++ HIRS + Sbjct: 20 IAAYLDVLKFERQLSPHTLENYTRELAVLQRLGARFATGIDLTRLLPHHIRSMIAHLHGN 79 Query: 129 --TPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + S + L+ R +KW A+R+ V NP V PK + + E Sbjct: 80 GLSGRSIARALSVWRGWYKWLALREAAVTANPVDGVRAPKSPKRLPKALSVEQAVALMEQ 139 Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 E + R E GLR S+ ++H++ ++ + V + Sbjct: 140 LPGDDPETIRDRAVNELFYSCGLRLSELVGLDLRHVKAGDYASASWLDLEAREVMVLGKG 199 Query: 242 MKLLAMTPIGKETFFINNDKQ-------------------------KMNATQFSIWFKAK 276 K + K + ++ Q I K Sbjct: 200 NKYRTVPVGSKAAEALAAWLAARPQLARPDAAPEDAHALFLSARGKRLTQRQIQIRMKRN 259 Query: 277 ATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 A AGV H +R AT + + G ++ + YT D L Sbjct: 260 AIAAGVPADVHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYT-SLDFQHLA 316 >gi|189461054|ref|ZP_03009839.1| hypothetical protein BACCOP_01701 [Bacteroides coprocola DSM 17136] gi|265753998|ref|ZP_06089353.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|189432144|gb|EDV01129.1| hypothetical protein BACCOP_01701 [Bacteroides coprocola DSM 17136] gi|263235712|gb|EEZ21236.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 376 Score = 112 bits (280), Expect = 7e-23, Method: Composition-based stats. Identities = 50/355 (14%), Positives = 104/355 (29%), Gaps = 27/355 (7%) Query: 11 VTKERTRHGKIIY-----YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65 + + R+GK Y Y G R A S E Sbjct: 28 LYLDIYRNGKRTYEYLKLYLIPGTDNNTRRQNEITMAAANAIKSKRIIELTSGEAGIVNH 87 Query: 66 KKPTTLKWLISEYRKSAHWGSLAV-NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 L + Y + + + + F ++ + ++ Sbjct: 88 TDKVYLLDWMQTYLEYQEKRDKKGIGQIKAVTHILKEYAGE--RFLLDRVDLAFCQGYID 145 Query: 125 SRKHT---------PSSAIQFLTSMRVLFKWAVRQEYVAINP---CLSVERPKRKTEGIR 172 T S+ + AVR + + NP E+PK Sbjct: 146 YMLTTFRPKGKPIAASTRNTYYQIFNGALNAAVRAKRLLRNPFNEMEKSEKPKMPESVRS 205 Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGT 231 T E+++ + + + + A+ F + GLR SD +++ + + Sbjct: 206 YMTIEEVRALIATPVQDGRVKNAYLFSCFCGLRISDIVGLKWKNVFVDNGQYRLAVAMQK 265 Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 + L P ++ ++ + + + K A AG+ K + H Sbjct: 266 TKEPIYLPLSNEALKWMPEREDKAADDHVFSL--PSNINQYLKPWAEAAGITKRFTFHTA 323 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 R AT+ GA + + G +V + Y K ++ + + ++ + D Sbjct: 324 RHTFATMMLTLGADLYTVSKLLGHTSVRMTQVYAKIINQKK--DEAVNLVNGLFD 376 >gi|291545712|emb|CBL18820.1| Site-specific recombinase XerD [Ruminococcus sp. SR1/5] Length = 322 Score = 112 bits (280), Expect = 7e-23, Method: Composition-based stats. Identities = 35/263 (13%), Positives = 84/263 (31%), Gaps = 14/263 (5%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----KH 128 + + + + + ++ + ++ + RKITT+ IR+ + K Sbjct: 46 DFLEMFLDAKKIEGCSERTIQYYKVTVEHLLSHI-ETSVRKITTEEIRTYLAEYQKNNKC 104 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + + ++ F W ++Y+ +P + + K KT T E +++ + Sbjct: 105 SNVTVDNIRRNISSFFSWLEEEDYILKSPMKRIHKIKTKTVVKSVITDEGIER-LRDNCK 163 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAM 247 + + L +G+R + V + I K V L Sbjct: 164 EIRDLAIIDLLYSTGIRVGELVNLNVDDIDLEGRECIVYGKGDKERRVYFDAKAKVHLKE 223 Query: 248 TPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300 ++ + ++ + I + + + + H R+ AT + D Sbjct: 224 YIAHRKDNNSALFVTLDAPHDRLKISGVEIRLRELGKRIDLERIHPHKFRRTMATRAIDK 283 Query: 301 GATAHELMATYGWKTVDQAETYT 323 G ++ G +D Y Sbjct: 284 GMPIEQVQKILGHSQIDTTMQYA 306 >gi|320107746|ref|YP_004183336.1| integrase family protein [Terriglobus saanensis SP1PR4] gi|319926267|gb|ADV83342.1| integrase family protein [Terriglobus saanensis SP1PR4] Length = 319 Score = 112 bits (280), Expect = 7e-23, Method: Composition-based stats. Identities = 41/294 (13%), Positives = 81/294 (27%), Gaps = 40/294 (13%) Query: 70 TLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGV 123 + L + ++ ++ ++ + D + +++ HIRS + Sbjct: 3 SFSELADSFLAMLRDERGVSAHTLRAYTRELNDFTAFLADLLGNEAEVKQVEHLHIRSYL 62 Query: 124 ESRKHTPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 S + +R FKW ++ V NP L V PK R + E++ Sbjct: 63 AVLYDRGLSRASAARALAAVRSWFKWLAKEGKVQQNPALLVSTPKLPKHLPRVPSAEEVN 122 Query: 181 QFKSFWSEGS----------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--------- 221 + + + R+ +E L G+R S+ + + Sbjct: 123 RVLDSIEQTGKKDESASWPERDRVIWELLYGCGIRNSELVGIDLSAIDWKNDAILVLGKG 182 Query: 222 ---FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN-------NDKQKMNATQFSI 271 + L GK ++ Sbjct: 183 RKERYVPLGDAANSAMRAYMPQREAKLQAAGKGKWMHSGPLLINLVARGDCRLTTRSVGR 242 Query: 272 WFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 KA A G+ H +R T + GA + G + + + YT Sbjct: 243 IVKAIAVNRGLPADVHPHTLRHAFGTHLLEEGADLRAIQEMLGHERLSTTQRYT 296 >gi|257076713|ref|ZP_05571074.1| integrase/recombinase [Ferroplasma acidarmanus fer1] Length = 280 Score = 112 bits (280), Expect = 7e-23, Method: Composition-based stats. Identities = 32/268 (11%), Positives = 85/268 (31%), Gaps = 26/268 (9%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKHTP 130 + + + + ++ + + D I + + ++++ Sbjct: 10 FERFMITER---KSYYTIKEYKFLISGFLSYC-NKDLSSIDFDDVENYKNFIVTEKQYSK 65 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 +S + ++R+ +K+ + + P R+++ + + + ++ Sbjct: 66 ASQYLAMKALRLYYKFKNKNTPPNL-------IPPRRSQKMPVYLNQKDAGVLINGAKSI 118 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPDGFMKLLAMT 248 + LY+G+R S+ + + + I K V +PD + + Sbjct: 119 RDIAVISVFLYTGIRVSELTNLQIGDVDFDENIIYIHAGKGDKDRIVVMPDICREHIKSY 178 Query: 249 PIGKETFFINNDKQKMNAT-------QFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 + +N+ ++ K A AG+ K + H +R AT Sbjct: 179 MKERIRIKSSNNYLFISNKKTKFDTSTVERMVKRVAKNAGITKNVTPHVLRHTFATSILR 238 Query: 300 AGATAHELMATYGWKTVDQAETYTKGAD 327 G + G ++ + YT D Sbjct: 239 NGGDIRFIQQILGHSSLATTQIYTHIDD 266 >gi|75761863|ref|ZP_00741791.1| DNA integration/recombination/inversion protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74490646|gb|EAO53934.1| DNA integration/recombination/inversion protein [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 363 Score = 112 bits (280), Expect = 7e-23, Method: Composition-based stats. Identities = 49/368 (13%), Positives = 99/368 (26%), Gaps = 43/368 (11%) Query: 11 VTKERTRHGKIIYYFR----KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 + K++ R G + R G ++++ + + Sbjct: 3 IYKDKER-GTYFFVVRVRQFDGTQKQVKRRGFKTKKEAREAEAKMLVEKE--------TN 53 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVES 125 T + Y +S + ++ + ++++ G IT KH+ + Sbjct: 54 SSLTFAQVADSYFDWY-CQRRKQSSINAIKNAIYNHLLKEFGKMKIDTITAKHVMNYQNK 112 Query: 126 R--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 ++ + Q T + +F +A++ + NP + ++ + + D Q Sbjct: 113 LLNNYSADTLKQIHTILSAIFNFAIKFYGLTSNPARIAGNFELESNKRMSYWEFDEFQRF 172 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD---- 239 + F L YSG R + + +I KT V P Sbjct: 173 IDTVDDLLYNAFFSTLYYSGARKGELLALTWADVDFVGKTININKTEYNRQVTKPKTKSS 232 Query: 240 -----------------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 L F + +K AGV Sbjct: 233 NRIILLPTLIINLLKKLKEHATLTAPVKNDYVVFGEFYNSIAT-STLDERYKKYVATAGV 291 Query: 283 NK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRIS 340 K H R A+ + G + + G V TY+ + + I Sbjct: 292 KKILLHEFRHSHASYLINKGVSPLVVAQRLGHSDVATTLNTYSHLYPSKQ--AEALAFIE 349 Query: 341 SVVDSDDP 348 + P Sbjct: 350 DDLAKKLP 357 >gi|168210485|ref|ZP_02636110.1| prophage LambdaBa04, site-specific recombinase, phage integrase family [Clostridium perfringens B str. ATCC 3626] gi|170711435|gb|EDT23617.1| prophage LambdaBa04, site-specific recombinase, phage integrase family [Clostridium perfringens B str. ATCC 3626] Length = 368 Score = 112 bits (280), Expect = 7e-23, Method: Composition-based stats. Identities = 52/347 (14%), Positives = 110/347 (31%), Gaps = 36/347 (10%) Query: 18 HGKIIYYFRKGH----GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 G G+ +RIR+ T A S+ P+ K LK Sbjct: 9 KGNWQVVISLGNDPVTKKRIRVKKQGFKTKKEAERFVNEYSSKVDNGFLLPKSKDIYLKD 68 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR-----K 127 I ++ + S+ +N++ ++ S + I+ G++ ++ T I++ Sbjct: 69 FILDWFYNHKILSIGINTKNNYLSRIETYIVPLLGNYKLTELDTLTIQNFYNYLLTKDTP 128 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 PSSA + + ++ K+A + + + P + + I W+K+++ F + Sbjct: 129 LKPSSAKKVIEALSNCLKYAKKLKLITYLPTDIEK-VNIEKPKIEFWSKQELDFFLN-EI 186 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247 + + +G+R + C + + + + L Sbjct: 187 KDTYLYFPVLICALTGVRVGELCGLKWCDVDFKRGYLNITRQVISDKSTNTLVCTENLKT 246 Query: 248 TPI--------------------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--- 284 T ++ + + N S+ F K K Sbjct: 247 TKSDRTISIPKVLLREFEKNLKAPNNFIVLSRENEMCNPRNISMDFTKKVNKYKDRLPQI 306 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330 S HG+R AT+ G + G + TYT + ++ Sbjct: 307 SIHGLRHTHATLLILNGENIKIVSDRLGHNDITTTLNTYTHIMEEMK 353 >gi|49087894|gb|AAT51509.1| PA0728 [synthetic construct] Length = 328 Score = 112 bits (280), Expect = 7e-23, Method: Composition-based stats. Identities = 39/317 (12%), Positives = 94/317 (29%), Gaps = 18/317 (5%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 + G+ G+R R + + +A + P+ + L L Sbjct: 5 KLPDGRWFVDVEPIKGKRFRKRFKTKMEAQQFEATARQKCAENPCWTLRPKDRRR-LSEL 63 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPS 131 + + + H +L+ R + + + GD + + RS + + Sbjct: 64 VELWYE-LHGQTLSNGHRCV--AILRLVAKDLGDPVAVSLEPAKVARLRSRQIANGMSGK 120 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWS 187 +A L ++ ++ + + + RP + E + + + Sbjct: 121 TANNRLGYLKSMYNELRQLGVIDHENPVGRMRPLKLQERPLSYLTKHQVSELLTALDART 180 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247 P++ L +G R ++ + L+ N K+ + +V + + L Sbjct: 181 TSPHPKMVARICLATGARWGEAQALTPERLKGNTVIFANTKSKRVRSVPISEELGADLRR 240 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307 F F + + + K +++H +R A+ G L Sbjct: 241 HWQTHGPFTNCLGV-------FRLVLLSTSIKLPKGQASHVLRHTFASHFIMNGGHIVTL 293 Query: 308 MATYGWKTVDQAETYTK 324 G ++ Y Sbjct: 294 QHILGHASLSMTMRYAH 310 >gi|319899442|ref|YP_004159539.1| integrase/recombinase XerC [Bartonella clarridgeiae 73] gi|319403410|emb|CBI76978.1| integrase/recombinase XerC [Bartonella clarridgeiae 73] Length = 322 Score = 112 bits (280), Expect = 8e-23, Method: Composition-based stats. Identities = 37/277 (13%), Positives = 80/277 (28%), Gaps = 30/277 (10%) Query: 78 YRKS-AHWGSLAVNSRISFESYFDQI----IRKSGDFD----YRKITTKHIRSGVESRKH 128 + +S + + I++E Q + G + R+ + R+ Sbjct: 29 WLESLVQTRRMTAQTAIAYERDTRQFLFFLCQHLGYQPTLNDLANLRVADFRAYLAYRRT 88 Query: 129 T---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK-------ED 178 S + + S+R F + R++ V + V PK + T ++ Sbjct: 89 QNINARSLSRNMASLRSFFNYLSREKEVNVPAAKLVRTPKYPKSLPKALTIESALRIVKE 148 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVE 236 Q ++ ++ L G+R S++ + + T K G V Sbjct: 149 ENQQENEPWIIARNTAILILLYGCGMRISEALALTPEQFADPSIKSLSVTGKGGKTRLVP 208 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQ-------KMNATQFSIWFKAKATKAGVNKS--AH 287 + + + +NN + + G+ ++ H Sbjct: 209 MIPIVHEAVENYLKCCPYPLLNNQPIFRGVRGKPLQPAIIQRTVQNLRAHLGLPETTTPH 268 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT G + G + + YT Sbjct: 269 ALRHSFATHLLSRGGDLRTIQELLGHACLSTTQVYTH 305 >gi|325661848|ref|ZP_08150469.1| hypothetical protein HMPREF0490_01205 [Lachnospiraceae bacterium 4_1_37FAA] gi|325471826|gb|EGC75043.1| hypothetical protein HMPREF0490_01205 [Lachnospiraceae bacterium 4_1_37FAA] Length = 322 Score = 112 bits (280), Expect = 8e-23, Method: Composition-based stats. Identities = 35/271 (12%), Positives = 84/271 (30%), Gaps = 14/271 (5%) Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 +K+ T + + + + + + D++++K RKI+T+ IR + Sbjct: 38 QKEEVTNDEYLQLFLDAKRIEGCSERTIQYYSVTVDKMLQKI-QTPVRKISTEEIRKYLV 96 Query: 125 SRK----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + + + ++ F W ++Y+ +P + + K K + E ++ Sbjct: 97 DYQKINDCSKVTVDNVRRNISSFFSWLEEEDYILKSPMRRIHKIKTKQPVKEIISDEAIE 156 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--TGTIITVELP 238 + + + L +G+R + + + Sbjct: 157 MLRDHCQC-PRDLAMIDLLYSTGIRVGELVNLNISDVDFEARECVVFGKGDKERRVYFDA 215 Query: 239 DGFMKLLAMTPIGKETFFINN-----DKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKF 292 + LL K+ ++ + I + K + K H R+ Sbjct: 216 KAKLHLLNYLSERKDNNPALFVTLDVPYDRLKISGVEIRIRTLGRKLNMEKIHPHKFRRT 275 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYT 323 AT + D G ++ G +D Y Sbjct: 276 MATRAIDKGMPIEQVQKLLGHSQIDTTMQYA 306 >gi|283771168|ref|ZP_06344059.1| phage integrase [Staphylococcus aureus subsp. aureus H19] gi|283459762|gb|EFC06853.1| phage integrase [Staphylococcus aureus subsp. aureus H19] Length = 349 Score = 112 bits (280), Expect = 8e-23, Method: Composition-based stats. Identities = 47/337 (13%), Positives = 103/337 (30%), Gaps = 26/337 (7%) Query: 13 KERTR--HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP--RKKP 68 + +TR GK Y K G+R R A + K + S Sbjct: 8 RMKTRCYDGKKWQYEFKHEGKRYRKKGFRTK------REANSAGLDKLNELRSGFNIDNY 61 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVES-- 125 TL+ + K+ + N+ + + I + G + KI + + + Sbjct: 62 ITLEEYFENWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDYS 121 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER----PKRKTEGIRPWTKEDMQQ 181 ++H + + ++R A+ + NP V P + + E Sbjct: 122 KEHAKETIRKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEIL 181 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-------KTGTIIT 234 + ++ LA ++ +G R S + ++H+ +I I Sbjct: 182 KDHVRKKRTRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTNTSPRYISIA 241 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293 M +++ I + + +N + K+ + ++H +R Sbjct: 242 KSDMKHIMDVISTFAISYDGYIFKEAGSIINLHAINNTLKSACRVNNIPIITSHALRHTH 301 Query: 294 ATISADAGATAHELMATYGWKTVD-QAETYTKGADRI 329 + G + H + G K + Y+ + Sbjct: 302 CSYLLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEK 338 >gi|13488149|ref|NP_085856.1| integrase/recombinase [Mesorhizobium loti MAFF303099] gi|14028105|dbj|BAB54697.1| integrase/recombinase [Mesorhizobium loti MAFF303099] Length = 299 Score = 112 bits (280), Expect = 8e-23, Method: Composition-based stats. Identities = 34/283 (12%), Positives = 82/283 (28%), Gaps = 18/283 (6%) Query: 79 RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY----RKITTKHIRSGVESRKHTPSSAI 134 +L+ +++ S+ Q R + T + +K P S Sbjct: 15 INDMQVRNLSPHTQDSYLLQVSQFARHFAKSPALLCQEDVRTYQVY-LTNEKKLAPKSIH 73 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194 ++++R L++ + E+ + P+ + E++ F E + + Sbjct: 74 VAVSALRFLYRVTLGFEWDFDRI---IPCPRVPKTLAVILSPEEVLHFLG-CVESLKHQT 129 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--GTIITVELPDGFMKLLAMTP--- 249 +GLR S++ + + ++ + V L ++ L Sbjct: 130 ILTTCYAAGLRISEAVHLRPEAIDRQRMVLRVDQGKGQKDRYVMLSARLLETLTDYWRAV 189 Query: 250 -IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHE 306 F + ++ +G+ + H +R A +AG Sbjct: 190 RPKTWMFPGTIPNEPISTNAVQNACGKAHRLSGLGKPVTPHSLRHAFACHLLEAGTDIRT 249 Query: 307 LMATYGWKTVDQAETYTKGADRIR-LGIKNSRRISSVVDSDDP 348 + G +++ Y + A + V P Sbjct: 250 IQLLLGHRSLSTTSQYLRIATSKVCAATSPLELLPRPVPKAAP 292 >gi|148270896|ref|YP_001245356.1| phage integrase family protein [Thermotoga petrophila RKU-1] gi|147736440|gb|ABQ47780.1| phage integrase family protein [Thermotoga petrophila RKU-1] Length = 256 Score = 112 bits (280), Expect = 8e-23, Method: Composition-based stats. Identities = 33/260 (12%), Positives = 78/260 (30%), Gaps = 21/260 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK-HTPSS 132 + EY + + + + S + +T R + + P++ Sbjct: 4 VEEYLEYLRVVKKRSERTLYQYRSILKEFAEY------EPVTLDSWREYLHRISSNAPTT 57 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 L ++ W + + + E + + + + + + Sbjct: 58 QRNKLVVVKNYLNWKADRGILNVKDRFWNEAEPPRYAVLPKAVELEEIKRIIEACDHRMY 117 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250 + F+ L +G+R S+ +Q + + K + + ++ L + Sbjct: 118 KAIFKVLANTGMRVSELVGLSIQDISLNDTARIRIKGKGNKERIINVSRDLVEELVRSGF 177 Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELM 308 ++ K + K A KAG+ K + H R A + G +++ Sbjct: 178 FEK---------KPSVRSIQRAVKRYARKAGIRKKVTPHIFRHSFAVALIERGIPLNKIQ 228 Query: 309 ATYGWKTVDQAETYTKGADR 328 A G + Y K A Sbjct: 229 ALLGHANISTTSIYLKIASE 248 >gi|307711353|ref|ZP_07647773.1| phage integrase family protein [Streptococcus mitis SK321] gi|307616869|gb|EFN96049.1| phage integrase family protein [Streptococcus mitis SK321] Length = 384 Score = 112 bits (280), Expect = 8e-23, Method: Composition-based stats. Identities = 57/366 (15%), Positives = 109/366 (29%), Gaps = 55/366 (15%) Query: 11 VTKERTRHGKIIYYF-------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63 + K +T+ G I+YY G +R Y + L Sbjct: 3 IHKYKTKKG-ILYYVSFYIGLDAYGKKKRHLKRGFKTKKEAKLYEARLEAGVVAPTVNTD 61 Query: 64 PRKKPTTLKWLISEYRKSA---HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 T K L E+ K+ + + ++ + I+ GD +I+ + Sbjct: 62 KPNPKVTYKELYQEWFKAYVGTVEETTSSQTKNIYRI---HILPIFGDKFVDQISPLDCQ 118 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-IRPWTKEDM 179 + + + T + Q + +F +A+ Y+ NP +V PK K W+ E++ Sbjct: 119 NFITQKSQTFKNIKQIKSYTSKIFDFAINMNYIDRNPMKNVIMPKIKKTRSDNFWSLEEL 178 Query: 180 QQFKSFWSEGSQPRLAFEFLL--YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----- 232 F E + F L +SGLR + + + + K+ Sbjct: 179 HHFLDIVKETEPFKHFALFRLLAFSGLRKGELYALKWADINFDSNLLNIDKSLGRIDGKA 238 Query: 233 -----------ITVELPDGFMKLLAMTP--------------------IGKETFFINNDK 261 T+ L D + ++ N+ Sbjct: 239 IEKSTKNESSVRTIYLDDETIDIIKQWRNFYLKEQSQFPLTKLNISNEYMFYYISSNDKI 298 Query: 262 QKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA- 319 + ++A + K + S HG R AT+ ++ G G + Sbjct: 299 EPLHADYINNVLNRIIKKHKLKPISPHGFRHTHATLMSEIGIDPSNTSKRLGHASSQMTL 358 Query: 320 ETYTKG 325 + YT Sbjct: 359 DVYTHT 364 >gi|254452140|ref|ZP_05065577.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 238] gi|198266546|gb|EDY90816.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 238] Length = 368 Score = 112 bits (280), Expect = 8e-23, Method: Composition-based stats. Identities = 45/320 (14%), Positives = 104/320 (32%), Gaps = 16/320 (5%) Query: 9 PFVTKERTRHGKIIYYFRKGHG--RRIRLPYPHESTFIPAYMSALT-GSTPKREYINSPR 65 + + K Y+ + G +RI + + A +AL R + + Sbjct: 38 KGLVLFVGKRSKTWYFQKDVGGQTKRILIGRFPIISAQAARQTALGFALEMGRGAGKAAQ 97 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 TL+ + Y + +++ + ++ +I+ Sbjct: 98 IGAPTLEATMEVYLARPKLR--SETNKVGMRAQLTLHLKDWMRLPLDEISKAMTVRRHHD 155 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 +PS+A L S R ++ A R + P +++E + K +G R + Sbjct: 156 MAGSPSAANHVLRSFRAIYNHARRTCDLPECPTMAIEWFEDKPDG-RIIENLKHWRKTID 214 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 R+ +E LL++GLR ++ + + + + K G + + ++L Sbjct: 215 DLPNPIHRVFYELLLFTGLRKTEVFTLKWEQILEDRIHLPMTKNGRSFDLPISQLHHEIL 274 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAH 305 A + + + + + H R+ AT++ +AG Sbjct: 275 APLRPLSSDWVF------PSPKSETGHITRPVR---LKYNPHMHRRTFATVAMEAGVLEE 325 Query: 306 ELMATYGWKTVDQA-ETYTK 324 + + + YT+ Sbjct: 326 IVGRLLNHTPLSITGQRYTR 345 >gi|254449549|ref|ZP_05062986.1| phage integrase [Octadecabacter antarcticus 238] gi|198263955|gb|EDY88225.1| phage integrase [Octadecabacter antarcticus 238] Length = 320 Score = 112 bits (280), Expect = 8e-23, Method: Composition-based stats. Identities = 43/272 (15%), Positives = 87/272 (31%), Gaps = 25/272 (9%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 L + +L S+ S + G T ++ + + S Sbjct: 28 LRARMIADMSGRNLGPASQSSHLRACKRFAAWLGRSP-ETATPDDVKYFQQYLVESGVSI 86 Query: 134 ---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 Q +T ++ LF+ +R+ + E K +K+++++ + Sbjct: 87 CTRNQTMTGVKFLFRVTLRRHDLVAEIFHLKEPVKI----PLVLSKKEIKRIL-AMAPSL 141 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--GTIITVELPDGFMKLLAMT 248 + R+ G+R + R V + ++ I+ ++ V LP + LL Sbjct: 142 KARVMLSLAYGCGMRAGEVVRLKVGDIDSDQEIIRIVQSKGRKDRNVMLPSDILGLLRQW 201 Query: 249 PIGKETFFINNDKQKM------------NATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 + T + ++ Q S FK A +AG+ + H +R A Sbjct: 202 WKERPTGQDRDVPAPERNLFPGYRSKHLSSRQISRLFKQTAQEAGITKPVTLHTLRHSFA 261 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGA 326 T + G + A G + Y A Sbjct: 262 THLLERGVDIRVIQALLGHSKLTTTARYASVA 293 >gi|119475308|ref|ZP_01615661.1| tyrosine recombinase [marine gamma proteobacterium HTCC2143] gi|119451511|gb|EAW32744.1| tyrosine recombinase [marine gamma proteobacterium HTCC2143] Length = 312 Score = 112 bits (280), Expect = 8e-23, Method: Composition-based stats. Identities = 41/299 (13%), Positives = 85/299 (28%), Gaps = 25/299 (8%) Query: 71 LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH---IRSGVESR 126 + I + L+ ++ ++ ++ H +R + Sbjct: 13 WQTAIDSFLTYQEVARQLSPHTLSNYRRDLEKFADYCRHRAIVDHHHAHNSDVRQWIALL 72 Query: 127 KHTPSSAIQFLTSMRV---LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 S S+ +K++ +Q NP + ++ P+ + + + MQQF Sbjct: 73 HRNGLSGTSLSRSLSSLRSFYKYSNKQGG-DHNPAIGIKAPRGEKRLPKTLDIDSMQQFL 131 Query: 184 S---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPD 239 S + R E SGLR S+ + I T K T+ + Sbjct: 132 SIDGDDWLTVRDRAILELFYSSGLRLSELVDMDTEDFDLQNGLIIVTGKGRKTRTLPVGS 191 Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNA-------TQFSIWFKAKATKAGV--NKSAHGVR 290 + L + N+ ++A K + + G+ H +R Sbjct: 192 HAIAALKNWFSVRSDAHPINNAAFVSAKGTRLGQRGIQQRLKKYSLQQGLGQKIHPHMLR 251 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG---IKNSRRISSVVDSD 346 A+ ++ + G + + YT D L R + Sbjct: 252 HSFASHMLESSGDLRAVQELLGHANITTTQVYTH-LDFQHLAKVYDTAHPRAVRKKPKE 309 >gi|320353544|ref|YP_004194883.1| integrase family protein [Desulfobulbus propionicus DSM 2032] gi|320122046|gb|ADW17592.1| integrase family protein [Desulfobulbus propionicus DSM 2032] Length = 311 Score = 112 bits (280), Expect = 8e-23, Method: Composition-based stats. Identities = 49/314 (15%), Positives = 102/314 (32%), Gaps = 18/314 (5%) Query: 42 TFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ 101 T+ + L P + + + L + +Y + N++ + + Sbjct: 2 TWAEETEALLRAGQPLPGELPANDLR---LNEAVEKYTMAVAPRK-KRNTQRLDQEIGGR 57 Query: 102 IIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC- 158 +IR + IT+K I + + R + PSS IQ L+ + +++ A + + +N Sbjct: 58 LIRYFDGKSLQTITSKDIAAYRDYRLQQVGPSSVIQDLSFLSCMYRMARIEWGLDVNDPG 117 Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQH 216 + RP + T + + + +L LL + +R S+ Sbjct: 118 AEIRRPSAPKNRLSLLTPKQIDTLLDYCCVSKSEKLYCYVLLLLHTAMRPSEGAGLRWDQ 177 Query: 217 LQNNIFSIK-------TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269 + I ++ T+ M++ G + F Sbjct: 178 VLIGQGMIDLTETKTDPRRVPMTRTIRKMFERMRVAGEGENGFVFLPPGKGYRDQPHRYF 237 Query: 270 SIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 F AG+ N + +G+R +A+ G + G + + Q YT D Sbjct: 238 RRSFDNACRYAGICNFTLYGLRHSAASYLIMNGVDIRTVAEIMGHRNISQTMKYTHFLDD 297 Query: 329 IRL-GIKNSRRISS 341 +L I + Sbjct: 298 HKLSAIGAIDNLGR 311 >gi|315181692|gb|ADT88605.1| Hypothetical bacteriophage integrase [Vibrio furnissii NCTC 11218] Length = 334 Score = 112 bits (280), Expect = 8e-23, Method: Composition-based stats. Identities = 44/317 (13%), Positives = 96/317 (30%), Gaps = 20/317 (6%) Query: 16 TRHGKIIY---YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 + GK + +G+R R Y + + +E++ P +L Sbjct: 4 KKEGKKWLVDLRPQGRNGKRYR-RQFDTKFEATQYEKHVLATAHDKEWLEKP-ADRRSLS 61 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS- 131 LI + K + + + ++ + ++ G +IT K + ++ + Sbjct: 62 ELIELWWK---YEGQSKKTAEAYLKEVKLVDKELGFPKAHQITHKLLADYRMAQLNKGRA 118 Query: 132 --SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + + + + +F + + +S + K + D G Sbjct: 119 MTTFNRKMNCLSNVFTALIAVKEFHNPHPVSGFKLKVPKTREMAFLSVDEMNHLLSVLSG 178 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249 ++A L +G R ++ + + + K G TV + + Sbjct: 179 DSYKVAKLC-LATGARWGEAEELKGSTVSHCKVTFLDTKNGKDRTVPISQELQDEIVTGK 237 Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMA 309 G+ + F + K ++AH +R A+ G L Sbjct: 238 SGRLFKDCYAE--------FYVQLKQCNFDLPKGQAAHVLRHTFASHFMMNGGNILTLQK 289 Query: 310 TYGWKTVDQAETYTKGA 326 G T+ Q TY A Sbjct: 290 ILGHATIQQTMTYAHFA 306 >gi|226946779|ref|YP_002801852.1| site-specific tyrosine recombinase XerC [Azotobacter vinelandii DJ] gi|259710429|sp|C1DJ58|XERC_AZOVD RecName: Full=Tyrosine recombinase xerC gi|226721706|gb|ACO80877.1| tyrosine recombinase XerC [Azotobacter vinelandii DJ] Length = 299 Score = 112 bits (280), Expect = 8e-23, Method: Composition-based stats. Identities = 32/279 (11%), Positives = 83/279 (29%), Gaps = 21/279 (7%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRK--- 127 + + ++ ++ + ++ G + + +R + Sbjct: 5 LDAFLDHLRNERQVSQHTLDGYRRDLAKVHAHCEREGLDAWSALDAGRLRRLIARLHLQG 64 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 H+ S + L+++R +++ +R+ +P + PK + R + QQ Sbjct: 65 HSSRSLARLLSALRGFYRYLLREGRCRHDPAAGLSPPKGERRLPRTLDADRTQQLLDGAV 124 Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 E + + E SGLR S+ + L ++ + + Sbjct: 125 EDDFIARRDQAMLELFYSSGLRLSELVGLDLDRLDLAAGLVRVHGKGNKARDLPIGSKAR 184 Query: 243 KLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSA 294 + L F+ +++ + + + G + H +R A Sbjct: 185 EALRAWLSLRAQARPADGALFVGRTGRRLTPRAVQLRVRQAGVRELGQHLHPHMLRHSFA 244 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 + ++ + G + + YT D L Sbjct: 245 SHLLESSQDLRAVQELLGHADIATTQIYTH-LDFQHLAA 282 >gi|212635507|ref|YP_002312032.1| Phage integrase:Phage integrase,SAM-like protein [Shewanella piezotolerans WP3] gi|212556991|gb|ACJ29445.1| Phage integrase:Phage integrase,SAM-like protein [Shewanella piezotolerans WP3] Length = 317 Score = 112 bits (280), Expect = 8e-23, Method: Composition-based stats. Identities = 41/289 (14%), Positives = 89/289 (30%), Gaps = 32/289 (11%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI-------------RS 121 + Y + + ++ + + I + + I ++ R Sbjct: 13 VEYYLELCLAKGQSSDTVRNKRGGLKKFIIWCQERNISTIDHINLDLMDDYAAYLNSYRK 72 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ- 180 +++ P+ LT ++ K+ R+ ++ N +E P + + + + Sbjct: 73 KLDNEPLGPAQKRNLLTYVKTFVKYMHRKGLLSKNTLSDIELPSKGHQIPKALYSVEEIE 132 Query: 181 ----QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITV 235 Q F +G + R E +G+R + + V + K V Sbjct: 133 VILEQPLLFGIKGLRDRATLEIFFATGIRRGELVKLNVDDIDFTGKMVCVHGKGKKERLV 192 Query: 236 ELPDGFMKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVNKS 285 + + LA F N+ ++ + S AG +++ Sbjct: 193 PISQRGCEWLAFYTGKIRPRFAFISSGKALFLANNGKRYVPGKLSDMASQYVKLAGFDRT 252 Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H R +AT D GA + G ++ + YT R +L Sbjct: 253 GACHLFRHNTATTMLDNGADLRHIQEMLGHASILTTQLYTH-VSRKKLS 300 >gi|302185959|ref|ZP_07262632.1| site-specific recombinase, phage integrase family protein [Pseudomonas syringae pv. syringae 642] Length = 354 Score = 112 bits (280), Expect = 8e-23, Method: Composition-based stats. Identities = 49/355 (13%), Positives = 104/355 (29%), Gaps = 30/355 (8%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 +T G RK + + + YI + TL+ Sbjct: 6 KTPSGTWKALIRKTGWPTV-AKTFRTKRDAEDWSRRTEDEMVRGVYIQRSGSERMTLEAA 64 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS--- 131 + Y ++ S ++I G + ++ + I + R + PS Sbjct: 65 LKRYLSDITPTK-KPTTQRGETSKAKKLIEHLGKYSLAALSAEIIAGYRDKRLNEPSRGG 123 Query: 132 -----SAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + L + L+ A+++ + NP L++ +P R + E+ + + Sbjct: 124 TISNNTVRLELALLSHLYTVAIQEWGLGLTFNPVLNIRKPSPGDGRDRRLSPEEERLLLA 183 Query: 185 FWSEGSQPRLAFEFL--LYSGLRCSDSCRAGVQHLQ----------NNIFSIKTQKTGTI 232 + S P L + L +G+R S+ + +T Sbjct: 184 AVNRHSNPMLGWIVCIALETGMRSSEISSLRRPQVDLAKRVIRLSDTKNDGSRTVPLSKR 243 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRK 291 T + F K F+ + K + H +R Sbjct: 244 ATEVFKAAMDNPVRPIDCNLVFFGEPGKDGKRRPYTFTKIWGHLKKKLDLPDFRFHDLRH 303 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346 + + + G + E+ A G K++ + YT R+ S+ + + Sbjct: 304 EAVSRLVEGGLSDQEVSAISGHKSMQMLKRYTHL-----RAEDLVVRLDSLKEKN 353 >gi|261364802|ref|ZP_05977685.1| tyrosine recombinase XerC [Neisseria mucosa ATCC 25996] gi|288566830|gb|EFC88390.1| tyrosine recombinase XerC [Neisseria mucosa ATCC 25996] Length = 299 Score = 112 bits (280), Expect = 8e-23, Method: Composition-based stats. Identities = 35/269 (13%), Positives = 90/269 (33%), Gaps = 19/269 (7%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGVESRKHTP- 130 + Y K + ++ ++ +++ + + +T + + ++ Sbjct: 10 LDGYLKMLGQQGKSAHTLSAYGRDLTELVRLLTEGSSETAQDLTRRDFVAALKRLSQQGL 69 Query: 131 --SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + + L++ R W V+ + +P ++++ P+ + +E++ Sbjct: 70 SERTLARKLSAWRQYCGWLVQSSMMDNDPTVNLKAPRLPERLPKALPQEELNHMLDNTPA 129 Query: 189 GS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243 + FE + SGLR S+ + + + + T K V L ++ Sbjct: 130 DDGLAVRDHALFELMYGSGLRLSEIHGLDLGDVLLDEGWVSVTGKGRKERQVPLSGKSVE 189 Query: 244 LLAMTPIGKETF------FINNDKQKMNATQFSIWFKAKATK--AGVNKSAHGVRKFSAT 295 L + F + ++ Q +A A + +G + S H +R A+ Sbjct: 190 ALRAYLSERVAADGETALFTGKNGTRLGQRQIQKRLQAWAVQQGSGQHISPHMMRHSYAS 249 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324 + + G + + YTK Sbjct: 250 HLLQSSRDIRAVQELLGHSNLSTTQIYTK 278 >gi|255291939|dbj|BAH90427.1| tyrosine recombinase [uncultured bacterium] Length = 320 Score = 112 bits (280), Expect = 8e-23, Method: Composition-based stats. Identities = 46/297 (15%), Positives = 81/297 (27%), Gaps = 37/297 (12%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKH 128 LI Y + LA + + D++ + + D + H+R V Sbjct: 12 AALIERYLEHVRVEKRLAARTVTLYGLDLDKLGQFAVQDDVGLTAVQGTHVRRWVARMHA 71 Query: 129 TPSS---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 S L+ R + W RQ +A NP V P++ + ++ Q Sbjct: 72 GGRSGRGIALILSGWRGFYAWLGRQGLIAANPVQDVRAPRQPRPLPKALGVDEAVQLAEH 131 Query: 186 ------WSEGSQPRLAFEFLLYSGLRCSDSCR------------AGVQHLQNNIFSIKTQ 227 ++ E L SGLR + Sbjct: 132 VAESDDPWLDARDAAMVELLYGSGLRVGELAGLDLTASDAALQAGRGWIDLAGAEVQVQG 191 Query: 228 KTGTIITVELPDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKA 277 K V L + L + FI ++ A K ++ Sbjct: 192 KGAKRRVVPLGRQAVAALRHWLALRGQVAAVDAAAQALFIGRRGTRLTAQAIWQRLKRRS 251 Query: 278 TKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 +AG+ H +R A+ + + G + + YT+ D L Sbjct: 252 LQAGLATPVHPHMLRHSFASHLLQSSGDLRAVQELLGHANIGTTQVYTR-LDFQHLA 307 >gi|225626413|ref|ZP_03784452.1| tyrosine recombinase XerD [Brucella ceti str. Cudo] gi|261221082|ref|ZP_05935363.1| tyrosine recombinase xerD [Brucella ceti B1/94] gi|261314935|ref|ZP_05954132.1| tyrosine recombinase xerD [Brucella pinnipedialis M163/99/10] gi|261316509|ref|ZP_05955706.1| tyrosine recombinase xerD [Brucella pinnipedialis B2/94] gi|261323973|ref|ZP_05963170.1| tyrosine recombinase xerD [Brucella neotomae 5K33] gi|261751173|ref|ZP_05994882.1| tyrosine recombinase xerD [Brucella suis bv. 5 str. 513] gi|261758967|ref|ZP_06002676.1| tyrosine recombinase xerD [Brucella sp. F5/99] gi|265987583|ref|ZP_06100140.1| tyrosine recombinase xerD [Brucella pinnipedialis M292/94/1] gi|265997042|ref|ZP_06109599.1| tyrosine recombinase xerD [Brucella ceti M490/95/1] gi|294851262|ref|ZP_06791935.1| tyrosine recombinase XerD [Brucella sp. NVSL 07-0026] gi|225618070|gb|EEH15113.1| tyrosine recombinase XerD [Brucella ceti str. Cudo] gi|260919666|gb|EEX86319.1| tyrosine recombinase xerD [Brucella ceti B1/94] gi|261295732|gb|EEX99228.1| tyrosine recombinase xerD [Brucella pinnipedialis B2/94] gi|261299953|gb|EEY03450.1| tyrosine recombinase xerD [Brucella neotomae 5K33] gi|261303961|gb|EEY07458.1| tyrosine recombinase xerD [Brucella pinnipedialis M163/99/10] gi|261738951|gb|EEY26947.1| tyrosine recombinase xerD [Brucella sp. F5/99] gi|261740926|gb|EEY28852.1| tyrosine recombinase xerD [Brucella suis bv. 5 str. 513] gi|262551510|gb|EEZ07500.1| tyrosine recombinase xerD [Brucella ceti M490/95/1] gi|264659780|gb|EEZ30041.1| tyrosine recombinase xerD [Brucella pinnipedialis M292/94/1] gi|294819851|gb|EFG36850.1| tyrosine recombinase XerD [Brucella sp. NVSL 07-0026] Length = 309 Score = 112 bits (280), Expect = 8e-23, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 84/289 (29%), Gaps = 33/289 (11%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR---K 127 I + + A N+ S+ + + + + T HIR +++ Sbjct: 8 AIENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKGVNLAEAETGHIRMTLDTMAAQG 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185 P+S + L+++R F++ + + +P ++ PK++ + + E++ + Sbjct: 68 FAPTSQARRLSALRQFFRFLYSEGFRQDDPTGILDAPKKQKPLPKIMSVENVGKLLDRAA 127 Query: 186 -----------WSEGSQPRLAFEFLLYSGLRCSDSC-------RAGVQHLQNNIFSIKTQ 227 + + E L +GLR S+ R + L K + Sbjct: 128 LEANEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKGSKDR 187 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---- 283 L + G + + F + Sbjct: 188 MVPLSRKARDALQKFLTLRDSLPGSDDNPWLFPAFSESGHLARQVFARELKGLAARAGLA 247 Query: 284 ---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 S H +R A+ GA + G + + YT + Sbjct: 248 ASSVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEER 296 >gi|114797932|ref|YP_758814.1| tyrosine recombinase XerD [Hyphomonas neptunium ATCC 15444] gi|114738106|gb|ABI76231.1| tyrosine recombinase XerD [Hyphomonas neptunium ATCC 15444] Length = 309 Score = 112 bits (280), Expect = 8e-23, Method: Composition-based stats. Identities = 36/281 (12%), Positives = 80/281 (28%), Gaps = 29/281 (10%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY--RKITTKHIRSGVESRKHTPS 131 I + + + N+ ++ + + +R PS Sbjct: 7 IGAFLEMMSAERGASPNTLDAYGRDLLDASEFCHLRLVTASSSDLSAWLADLAARGMAPS 66 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 + + L+++R F++ ++ +P ++ P + E ++E++ + + Sbjct: 67 TQARKLSAVRRFFRFLFQEGDRKDDPTARLDGPSPEREVPDVLSREEVGRLIEACGNDKR 126 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL------- 244 + E L +GLR ++ V +L I D L Sbjct: 127 LKCLVELLYGAGLRATELVTLRVGNLPRRKAGQWMSADIIIRGKGGKDRLCPLGRAALIA 186 Query: 245 ----------------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KS 285 L + F + + + + A +AG+ Sbjct: 187 LSEWLEVREASLPDNPLMRSKQEGFVFPSRGKEGHLTRRRLGQMLEDLAGEAGLRSERVY 246 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 H +R AT GA + G + + YT Sbjct: 247 PHALRHAYATHLLQGGADLRVVQTLLGHADIATTQIYTHVL 287 >gi|118462850|ref|YP_882918.1| site-specific tyrosine recombinase XerC [Mycobacterium avium 104] gi|118164137|gb|ABK65034.1| tyrosine recombinase XerC [Mycobacterium avium 104] Length = 301 Score = 112 bits (280), Expect = 8e-23, Method: Composition-based stats. Identities = 38/285 (13%), Positives = 90/285 (31%), Gaps = 28/285 (9%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHTP-- 130 EY + ++R ++ ++ +G+ ++ +RS + + Sbjct: 11 FDEYLALQ--CGRSAHTRRAYLGDLRSLLAFAGERGTGLDGLSLPLLRSWLSAAAAGGVA 68 Query: 131 -SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED--------MQQ 181 ++ + ++++ WAVR+ + +P ++ PK ++ Sbjct: 69 RTTLARRTSAVKAFTAWAVRRGLLTADPAARLQVPKTHRTLPAVLRQDQALGAMAAAKNG 128 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240 + RL E L +G+R S+ C + + ++ K +V Sbjct: 129 AAQGDPIALRDRLIVEMLYATGIRVSELCGLDIDDVDTGRRLVRVLGKGNKQRSVPFGAP 188 Query: 241 FMKLLAMTPIGKETFFINNDKQK-----------MNATQFSIWFKAKATKAG-VNKSAHG 288 + L N + ++ + A +G + HG Sbjct: 189 AGEALHAWLADGRPALANAESGPALLLGARGRRLDVRQARTVVHQTIAAVSGAPDMGPHG 248 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 +R +AT + GA + G ++ + YT A + Sbjct: 249 LRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSRLRAV 293 >gi|42526714|ref|NP_971812.1| integrase/recombinase XerD [Treponema denticola ATCC 35405] gi|41817029|gb|AAS11723.1| integrase/recombinase XerD [Treponema denticola ATCC 35405] Length = 274 Score = 112 bits (280), Expect = 8e-23, Method: Composition-based stats. Identities = 38/251 (15%), Positives = 73/251 (29%), Gaps = 24/251 (9%) Query: 102 IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF---LTSMRVLFKWAVRQEYVAINPC 158 D T + R + A + ++ F++ + + NP Sbjct: 4 FQEHMSDSLIENATEADCIDFILHRSESGIMAKTIAKDIAALNSFFRFLIIEGVRKDNPS 63 Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGV 214 S+ERPKR+ R + +++ + S + R FE + +GLR S+ + Sbjct: 64 ESIERPKREKTLPRVLSPDEVDSLFAAIPLDSPNNIRDRALFELIYSAGLRVSEIVNLKM 123 Query: 215 QHLQNNIF-SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN-------- 265 + + + T K V L + T + + Sbjct: 124 EDIFYDEDLIKVTGKGNKERIVPFGSAAKYWLKQYILEARTELLKPKHPENTLISGSVFL 183 Query: 266 --------ATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317 + +G+ H +R AT GA + G + Sbjct: 184 NNRGAVLTRKGIWKRINELSNFSGIETKVHTLRHSYATHLLAGGADLRSVQCLLGHSDIS 243 Query: 318 QAETYTKGADR 328 + YT D+ Sbjct: 244 TTQVYTHIEDK 254 >gi|41409056|ref|NP_961892.1| site-specific tyrosine recombinase XerC [Mycobacterium avium subsp. paratuberculosis K-10] gi|41397415|gb|AAS05275.1| XerC [Mycobacterium avium subsp. paratuberculosis K-10] Length = 301 Score = 112 bits (280), Expect = 8e-23, Method: Composition-based stats. Identities = 38/285 (13%), Positives = 90/285 (31%), Gaps = 28/285 (9%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHTP-- 130 EY + ++R ++ ++ +G+ ++ +RS + + Sbjct: 11 FDEYLALQ--CGRSAHTRRAYLGDLRSLLAFAGERGTGLDGLSLPLLRSWLSAAAAGGVA 68 Query: 131 -SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED--------MQQ 181 ++ + ++++ WAVR+ + +P ++ PK ++ Sbjct: 69 RTTLARRTSAVKAFTAWAVRRGLLTADPAARLQVPKTHRTLPAVLRQDQALGAMAAAKTG 128 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240 + RL E L +G+R S+ C + + ++ K +V Sbjct: 129 AAQGDPIALRDRLIVEMLYATGIRVSELCGLDIDDVDTGRRLVRVLGKGNKQRSVPFGAP 188 Query: 241 FMKLLAMTPIGKETFFINNDKQK-----------MNATQFSIWFKAKATKAG-VNKSAHG 288 + L N + ++ + A +G + HG Sbjct: 189 AGEALHAWLADGRPALANAESGPALLLGARGRRLDVRQARTVVHQTIAAVSGAPDMGPHG 248 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 +R +AT + GA + G ++ + YT A + Sbjct: 249 LRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSRLRAV 293 >gi|322435169|ref|YP_004217381.1| integrase family protein [Acidobacterium sp. MP5ACTX9] gi|321162896|gb|ADW68601.1| integrase family protein [Acidobacterium sp. MP5ACTX9] Length = 310 Score = 112 bits (280), Expect = 8e-23, Method: Composition-based stats. Identities = 48/285 (16%), Positives = 86/285 (30%), Gaps = 35/285 (12%) Query: 74 LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRKH 128 L + + ++ ++ G+ + HIR + Sbjct: 7 LADGFLAMLRNERGASEHTVRAYTREVKDFAAYLAGEMGERGIGAVEHLHIRGYLSVLYA 66 Query: 129 TP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 SS + L S+R FKW ++ V NP L V PKR R + E++ + Sbjct: 67 RGLEKSSMARALASVRSWFKWLAKEGKVEQNPALLVSTPKRAQHLPRVPSAEEVNRVMDS 126 Query: 186 WSEGS------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238 + R+ FE L G+R S+ C + ++Q ++ K V L Sbjct: 127 LESADGGTWPERDRVIFELLYGCGIRNSELCGLDMGNVQWANDAVLVRGKGKKERLVPLG 186 Query: 239 DGFMKLLAMTPIGKE------------------TFFINNDKQKMNATQFSIWFKAKATKA 280 D + + ++ KA A Sbjct: 187 DEAAAAVRAYMPQRAERLAAAGKGGLIGDGALLMNARMRGTCRLTTRSVGRIVKAIAQSR 246 Query: 281 GV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 G+ + H +R T + GA + G + + + YT Sbjct: 247 GLAADVHPHTLRHAFGTHMLEDGADLRAIQEMLGHERLSTTQRYT 291 >gi|292491157|ref|YP_003526596.1| integrase family protein [Nitrosococcus halophilus Nc4] gi|291579752|gb|ADE14209.1| integrase family protein [Nitrosococcus halophilus Nc4] Length = 400 Score = 112 bits (280), Expect = 8e-23, Method: Composition-based stats. Identities = 46/362 (12%), Positives = 108/362 (29%), Gaps = 30/362 (8%) Query: 10 FVTKERTRHGKIIYYFRKGHGR---RIRLPYPHESTFIPAYMSALTGS---------TPK 57 + + G+ + F G RI L E + A Sbjct: 27 GLRLRVSTVGRKSWLFTYRKGGKLNRITLGVYPEMSLARAREEVSQRRSLLNRGLDPAHI 86 Query: 58 REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITT 116 ++ T+ L Y + + S E + ++ + G + I Sbjct: 87 ERIHKEEERQAPTMAQLAELYLE--RYAKAKKRSWREDERLLKKDVLPRWGHRKAKDIVR 144 Query: 117 KHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 + + + ++ + +P A + L +R +F +A+ + + +NPC +V+ P ++ + R Sbjct: 145 RDVVALLDDIIDRGSPIVANRTLACVRKMFNYALERSLIEMNPCSAVKMPGKERKRDRVL 204 Query: 175 T---KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 RLA + L + + RA H + T Sbjct: 205 NEEEIRTFWHGLKEARISLPIRLALQLQLVTAQCKGELIRAEWSHFDFALGWWTISAERT 264 Query: 232 IITVELPDGFMKLLA------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NK 284 + L F N ++ + T + G+ Sbjct: 265 KNHLAHRVPLSPLALESIEGLRGFHSLFLFPSRNGEKPLLDTSIDHAVRKNLDVLGIAPF 324 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA--DRIRLGIKNS-RRISS 341 + H +R+ +A+ G + + Y + + R ++ +++ + Sbjct: 325 TPHDLRRTAASHMTGMGISRLVVSKILNHAESGVTAVYDRHSYDSEKRHALEAWGKKLEA 384 Query: 342 VV 343 ++ Sbjct: 385 II 386 >gi|227544652|ref|ZP_03974701.1| phage integrase/recombinase [Lactobacillus reuteri CF48-3A] gi|300909431|ref|ZP_07126892.1| phage integrase family integrase/recombinase [Lactobacillus reuteri SD2112] gi|227185377|gb|EEI65448.1| phage integrase/recombinase [Lactobacillus reuteri CF48-3A] gi|300893296|gb|EFK86655.1| phage integrase family integrase/recombinase [Lactobacillus reuteri SD2112] Length = 322 Score = 112 bits (280), Expect = 8e-23, Method: Composition-based stats. Identities = 36/264 (13%), Positives = 84/264 (31%), Gaps = 14/264 (5%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRK 127 + I++Y + + + +++ + G +KITT+ +R +SR Sbjct: 45 ESYITDYLAAKQVEGCSEKTINYYQATLKMMFSYLG-KHVQKITTEDLRDYLGNYQQSRN 103 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + + F W ++ + +P + + K + ++ ED+++ Sbjct: 104 SSRVTIDNIRRIFSSFFSWLEDEDVIIKSPVRRIHKVKSSAKVKDTYSDEDLER-LRDHC 162 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA 246 + + L +G+R + + + K V L Sbjct: 163 NSERDVAMIDILASTGMRIGELVHLNQNDINFDERECVVLGKGNKQRIVYFDARSKIHLQ 222 Query: 247 MTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISAD 299 ++ + Q+M+ K +AG+ H R+ AT + D Sbjct: 223 NYLAKRKDANSALFVSLHVPHQRMSINGIENRLKNLGKRAGIAKVYPHKFRRTLATNAID 282 Query: 300 AGATAHELMATYGWKTVDQAETYT 323 G ++ G + +D Y Sbjct: 283 KGMPIEQVQKLLGHERIDTTLHYA 306 >gi|158522916|ref|YP_001530786.1| integrase family protein [Desulfococcus oleovorans Hxd3] gi|158511742|gb|ABW68709.1| integrase family protein [Desulfococcus oleovorans Hxd3] Length = 357 Score = 112 bits (280), Expect = 8e-23, Method: Composition-based stats. Identities = 46/354 (12%), Positives = 94/354 (26%), Gaps = 23/354 (6%) Query: 11 VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 V + Y F R + + A + + +P Sbjct: 3 VYSVTGKG--WRYDFTHMGTRYTEAWFKTKKEANQAEAEKRKEIKNPKPVLETPTD--MA 58 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG-VESRKHT 129 L+++ + + + IS+ + G ++T I+ + K + Sbjct: 59 FLELVNQKLDHVKAYN-SKSHYISYLYMARRWANLWGHLPCGELTGDMIQKHLYQRHKVS 117 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 +A Q L +R +F + V Q+ + +P + + + ED+ + + Sbjct: 118 AYTANQDLRYLRAVFNFGVGQKMIYTDPTAGIRFFPVEKKIKYVPCSEDIDKVIAAADPD 177 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGV----QHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 +Q L + + + K T V + + +L Sbjct: 178 TQDYLWAIRETLGRVSEINRLVWEDINLDERFIILYTRKKRGGHLTPRKVPMTEKLHDVL 237 Query: 246 AMTPIGKETFFINNDKQKMN-----------ATQFSIWFKAKATKAGVNK-SAHGVRKFS 293 + + + K+ KAGV H +R Sbjct: 238 QNRFNRRSPDVPWVFWHRFWNKRNGEFNIGPYKDRKRFMKSLCEKAGVRYFRFHALRHSG 297 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSRRISSVVDSD 346 A+I + G + E Y D R I R +D Sbjct: 298 ASIMDGNDVPIAAIQRILGHENRKTTEIYLHSMGDMERNAIAVFERARGKSHTD 351 >gi|262202039|ref|YP_003273247.1| integrase family protein [Gordonia bronchialis DSM 43247] gi|262085386|gb|ACY21354.1| integrase family protein [Gordonia bronchialis DSM 43247] Length = 304 Score = 112 bits (280), Expect = 9e-23, Method: Composition-based stats. Identities = 34/286 (11%), Positives = 82/286 (28%), Gaps = 26/286 (9%) Query: 74 LISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESRKHTP 130 ++ E+ + ++ ++ +I +G I +R+ + Sbjct: 11 VLDEFADHLRLEMGRSPHTVRAYVGDVRGLIAFAGARGVATADIDLTLLRAWLAEHTRRG 70 Query: 131 S---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185 + + + ++S++ WAVR+ ++ +P + PK + + Sbjct: 71 AARTTIARQVSSVKTFCAWAVREGLMSDDPSHRLRAPKAHRTLPAVLAPAQVPDVIAAAA 130 Query: 186 ------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELP 238 + + E L G+R + C V + + ++ TV Sbjct: 131 AERPQGDPIALRDTVIVEVLYAGGIRVGELCGLDVDDVDRDRRVLRVIGKGDKERTVPYG 190 Query: 239 DGFMKLLAMTPIGKETFFINNDKQ----------KMNATQFSIWFKAKATKAGVN-KSAH 287 L +++ +AG H Sbjct: 191 APAAVALDAWLRHGRPALATERSGAALLLGARGGRLDQRMARTVVTRAVEQAGGPAMGPH 250 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 G+R +AT + GA + G ++ + YT + + Sbjct: 251 GLRHSAATHLLEGGADLRVVQELLGHSSLATTQIYTHVSVERLRAV 296 >gi|225351903|ref|ZP_03742926.1| hypothetical protein BIFPSEUDO_03507 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157150|gb|EEG70489.1| hypothetical protein BIFPSEUDO_03507 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 358 Score = 112 bits (280), Expect = 9e-23, Method: Composition-based stats. Identities = 50/341 (14%), Positives = 97/341 (28%), Gaps = 41/341 (12%) Query: 16 TRHGKIIYYFRKGHGRRIR----LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 +G FR + R + T Sbjct: 7 KANGTWYVQFRYTDWKGERQQKLKRGFATKKEAQTWEREFLMQKQA--------DVNMTF 58 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRK--- 127 + Y K L +N+ ++ ES +I+ G +IT K + + + Sbjct: 59 ESFAQLYEKDMKPK-LKLNTWLTKESIIQKKILPYFGKRKLSEITAKDVMDWQNAIRELT 117 Query: 128 ------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP-KRKTEGIRPWTKEDMQ 180 ++P+ + LF AVR + +NP + + WTK++ Sbjct: 118 DAKGKPYSPTYLKTVHNQLSALFNHAVRYYGLQVNPAAKAGNMGVEERREMLFWTKDEYL 177 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------- 232 +F + AFE L + G+R + ++ K+ Sbjct: 178 KFADAMMDKPLSYYAFEMLYWCGIREGELLALTPTDFDFEAGTVSISKSYQRLKGKDVIT 237 Query: 233 --------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284 +++P + + N ++ A AGV + Sbjct: 238 TPKTKKSNRVIKMPKFLCGEMEDYLKMFYSTGANERIFSVSKHYLHHEMDRGAKAAGVKR 297 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R ++ D G TA + G +++D Y Sbjct: 298 IRIHDLRHSHISLLIDMGFTALAIADRVGHESIDITYRYAH 338 >gi|149916267|ref|ZP_01904787.1| Phage integrase [Roseobacter sp. AzwK-3b] gi|149809721|gb|EDM69573.1| Phage integrase [Roseobacter sp. AzwK-3b] Length = 390 Score = 112 bits (280), Expect = 9e-23, Method: Composition-based stats. Identities = 49/329 (14%), Positives = 100/329 (30%), Gaps = 29/329 (8%) Query: 27 KGHGRRIRLPYPHESTFIPAYMSALTGSTPKR----EYINSPRKKPTTLKWLISEYRK-- 80 G R I+L E + A L + K TL ++ Sbjct: 50 DGKMRVIKLGCFPELSAEDARQLCLKHKREISVGASADELAKSTKSITLDQFYEDHYLPW 109 Query: 81 SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HTPSSAIQFL 137 + + N + S + G I+ ++ K + P S + Sbjct: 110 YKTYRRASANIVQMYRS---NFHLRFGHRQLHSISQTDLKQLTNEMKQLGYAPGSVNTTV 166 Query: 138 TSMRVLFKWAVRQ--EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE--GSQPR 193 +R + + A + + R ++++ Q+ + + + Sbjct: 167 VVLRGMLRRADDWGLCRIHHSLHKPPNLLPDTKRHERFLSRDEAQKLQVVLRKRGATPVN 226 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPDGFMKLLAMTPIG 251 LA FLLY+G R S+ A + + + + K G TV L + +L Sbjct: 227 LAILFLLYTGARKSEVLNAEWRSINMDRCEWRIPLSKNGQPRTVILSQKAVAILQSARSY 286 Query: 252 KETFF----------INNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADA 300 ++ + N + + +K +A + H +R A+ +A Sbjct: 287 QQRHYGKQAKQVSAVFANPQTLLPYHNIWETWKRVRIEADLPDLRLHDLRHSYASTLINA 346 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329 G + +E+ G + + Y A Sbjct: 347 GVSIYEVQKLLGHSHIATTQRYAHLASER 375 >gi|17986324|ref|NP_538958.1| site-specific tyrosine recombinase XerD [Brucella melitensis bv. 1 str. 16M] gi|260562936|ref|ZP_05833422.1| tyrosine recombinase xerD [Brucella melitensis bv. 1 str. 16M] gi|265992055|ref|ZP_06104612.1| tyrosine recombinase xerD [Brucella melitensis bv. 1 str. Rev.1] gi|265993791|ref|ZP_06106348.1| tyrosine recombinase xerD [Brucella melitensis bv. 3 str. Ether] gi|265999264|ref|ZP_06111622.1| tyrosine recombinase xerD [Brucella melitensis bv. 2 str. 63/9] gi|34222943|sp|Q8YJP2|XERD_BRUME RecName: Full=Tyrosine recombinase xerD gi|17981909|gb|AAL51222.1| integrase/recombinase xerd [Brucella melitensis bv. 1 str. 16M] gi|260152952|gb|EEW88044.1| tyrosine recombinase xerD [Brucella melitensis bv. 1 str. 16M] gi|262764772|gb|EEZ10693.1| tyrosine recombinase xerD [Brucella melitensis bv. 3 str. Ether] gi|263003121|gb|EEZ15414.1| tyrosine recombinase xerD [Brucella melitensis bv. 1 str. Rev.1] gi|263092931|gb|EEZ17106.1| tyrosine recombinase xerD [Brucella melitensis bv. 2 str. 63/9] Length = 309 Score = 112 bits (280), Expect = 9e-23, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 83/289 (28%), Gaps = 33/289 (11%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR---K 127 I + + A N+ S+ + + + + T HIR +++ Sbjct: 8 AIENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKGVNLAEAETGHIRMTLDTMAAQG 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185 P+S + L+++R F++ + + +P + PK++ + + E++ + Sbjct: 68 FAPTSQARRLSALRQFFRFLYSEGFRQDDPTGILYAPKKQKPLPKIMSVENVGKLLDRAA 127 Query: 186 -----------WSEGSQPRLAFEFLLYSGLRCSDSC-------RAGVQHLQNNIFSIKTQ 227 + + E L +GLR S+ R + L K + Sbjct: 128 LEANEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKGSKDR 187 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---- 283 L + G + + F + Sbjct: 188 MVPLSRKARDALQKFLTLRDSLPGSDDNPWLFPAFSESGHLARQVFARELKGLAARAGLA 247 Query: 284 ---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 S H +R A+ GA + G + + YT + Sbjct: 248 ASSVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEER 296 >gi|228902069|ref|ZP_04066233.1| YdcL (Lambda integrase-like, N-terminal,DNA breaking-rejoining enzyme, catalytic core) [Bacillus thuringiensis IBL 4222] gi|228857495|gb|EEN01991.1| YdcL (Lambda integrase-like, N-terminal,DNA breaking-rejoining enzyme, catalytic core) [Bacillus thuringiensis IBL 4222] Length = 362 Score = 112 bits (280), Expect = 9e-23, Method: Composition-based stats. Identities = 49/368 (13%), Positives = 100/368 (27%), Gaps = 43/368 (11%) Query: 11 VTKERTRHGKIIYYFR----KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 + K++ R G + R G ++++ + + + Sbjct: 2 IYKDKER-GTYFFVVRVRQFDGTQKQVKRRGFKTKKEAREAEAKM--------LVEKETN 52 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVES 125 T + Y +S + ++ + ++++ G IT KH+ + Sbjct: 53 SSLTFAQVADSYFDWY-CQRRKQSSINAIKNAIYNHLLKEFGKMKIDTITAKHVMNYQNK 111 Query: 126 R--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 ++ + Q T + +F +A++ + NP + ++ + + D Q Sbjct: 112 LLNNYSADTLKQIHTILSAIFNFAIKFYGLTSNPARIAGNFELESNKRMSYWEFDEFQRF 171 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD---- 239 + F L YSG R + + +I KT V P Sbjct: 172 IDTVDDLLYNAFFSTLYYSGARKGELLALTWADVDFVGKTININKTEYNRQVTKPKTKSS 231 Query: 240 -----------------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 L F + +K AGV Sbjct: 232 NRIILLPTLIINLLKKLKEHATLTAPVKNDYVVFGEFYNSIAT-STLDERYKKYVATAGV 290 Query: 283 NK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRIS 340 K H R A+ + G + + G V TY+ + + I Sbjct: 291 KKILLHEFRHSHASYLINKGVSPLVVAQRLGHSDVATTLNTYSHLYPSKQ--AEALAFIE 348 Query: 341 SVVDSDDP 348 + P Sbjct: 349 DDLAKKLP 356 >gi|294794983|ref|ZP_06760118.1| putative site-specific recombinase, phage integrase family [Veillonella sp. 3_1_44] gi|294454345|gb|EFG22719.1| putative site-specific recombinase, phage integrase family [Veillonella sp. 3_1_44] Length = 357 Score = 112 bits (280), Expect = 9e-23, Method: Composition-based stats. Identities = 50/362 (13%), Positives = 106/362 (29%), Gaps = 42/362 (11%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 + R + +G+R + A + + + +L Sbjct: 3 KKRSDGRYQVSKMINGKRKYFYGSTKKAAAEAMEKYVNANQSCANF-----DDTISLNTW 57 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESR-KHTPSS 132 I+ + + S+ + S+ ++ I K G +I +R ES + + Sbjct: 58 INIWLQ-LKEKSITPATYQSYTGIINRYIRDKIGGVKLAEIKPNTLRYVFESMDGLSSRT 116 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 +T + + + AV+ + + N +++RPK D + S+ Sbjct: 117 ISYTMTILSSILEQAVKDDIIPKNYMKNIDRPKHVKVRHMVTLSADEVKNFLSNISNSEH 176 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNI-----------------FSIKTQKTGTIITV 235 F+ +G+R S+ + S T+ T + + Sbjct: 177 HALFKLAFATGMRRSELLGLRWSDIDFKKSTISISQTALKIGSTAVISNTTKTTSSKRII 236 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQ-------------KMNATQFSIWFKAKATKAGV 282 + ++ L + I + S K A G Sbjct: 237 AIDTDTIQELMKHKTTIDKRRIKTMNWINNNLVFPGIKGAPRCPDEVSKLCKKYANLIGK 296 Query: 283 N-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRIS 340 + HG R AT+ + GA + G + + TY+ ++ RIS Sbjct: 297 PTFTMHGTRHTHATLLIENGANMKAIQERLGHASFQETMDTYSHVTP--KMEDDIVERIS 354 Query: 341 SV 342 + Sbjct: 355 KI 356 >gi|218282511|ref|ZP_03488761.1| hypothetical protein EUBIFOR_01343 [Eubacterium biforme DSM 3989] gi|218216498|gb|EEC90036.1| hypothetical protein EUBIFOR_01343 [Eubacterium biforme DSM 3989] Length = 343 Score = 112 bits (280), Expect = 9e-23, Method: Composition-based stats. Identities = 33/263 (12%), Positives = 82/263 (31%), Gaps = 14/263 (5%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK----H 128 LI+++ + + + + + ++ + +TT +R + + Sbjct: 67 ELINKFIAAKEIEGCSERTTKYYYATLIKMDSMI-TKNVTHLTTDDLRMYLTEYQKINNC 125 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + +S ++ F W + Y+ +P + + K ++ E ++ Sbjct: 126 SKASIDNIRRNLSSFFSWLEEENYILKSPMKRIHKIKTDKVIKETYSDETLEL-LRDNCN 184 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAM 247 + + L +G+R + R + + V L Sbjct: 185 NLRDLAIIDLLSSTGMRVGELVRLNINDIDFENRECVVFGKGNKERPVYFDARTKIHLRN 244 Query: 248 TPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300 + + + ++N + I + K G+NK H R+ AT + D Sbjct: 245 YINSRNDDNVALFVSLDAPHDRLNISGVEIRLRQLGRKLGINKVHPHKFRRTVATKAIDK 304 Query: 301 GATAHELMATYGWKTVDQAETYT 323 G ++ + G +D Y Sbjct: 305 GMPIEQVQSLLGHSQIDTTMHYA 327 >gi|254445051|ref|ZP_05058527.1| site-specific recombinase, phage integrase family protein [Verrucomicrobiae bacterium DG1235] gi|198259359|gb|EDY83667.1| site-specific recombinase, phage integrase family protein [Verrucomicrobiae bacterium DG1235] Length = 307 Score = 112 bits (280), Expect = 9e-23, Method: Composition-based stats. Identities = 43/297 (14%), Positives = 90/297 (30%), Gaps = 36/297 (12%) Query: 74 LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS----------GDFDYRKITTKHIRSG 122 + + + L+ + ++E+ + + G R+ I Sbjct: 11 WVEPFVRHLSGERRLSAYTVRNYEAALETFFQFLDTDSKWGGNLGKVSLREARDFVIEQ- 69 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 R+ + + +++ +R FK+ +RQ + NP + + PK + T++ ++ Sbjct: 70 --QRRVSRRTLHNYVSGLRTFFKYWIRQGKLEANPLVGLVLPKLPKKLPAFMTQKQVKLL 127 Query: 183 KSFW-----------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG- 230 + + RL E L +G R S+ C + + + G Sbjct: 128 LDGPMLLLENESITAFQAWRDRLVLELLYGAGFRVSELCGLTYGQVSFDEGVARIVGKGG 187 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFIN-------NDKQKMNATQFSIWFKAKATKAGVN 283 L M +L N + K + K A + Sbjct: 188 KSRICPLGRVAMAVLDKWRREFAVGTAFADPVVLSNRRVKWTPRGVQLLLKKYLALADLP 247 Query: 284 --KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKNSR 337 + H +R AT D GA + G + + YT R++ + Sbjct: 248 MDLTPHKIRHSYATHLLDNGADLRLVQELLGHAKLSTTQIYTHVNIGRLKEAFDQAH 304 >gi|251772728|gb|EES53290.1| phage integrase family protein [Leptospirillum ferrodiazotrophum] Length = 326 Score = 112 bits (280), Expect = 9e-23, Method: Composition-based stats. Identities = 41/319 (12%), Positives = 105/319 (32%), Gaps = 21/319 (6%) Query: 17 RHGKIIYYFR-KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75 + G + + + + G + ++ + + + +++ + TTL + Sbjct: 6 KRGDLQWEVQIRRKGFPPQSRTFSAKAEADSWAAVIESEMARGVFVSRTEAENTTLSEAL 65 Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSA 133 Y + Y+ I + + + ++R + + S+ Sbjct: 66 DRYEREISLLKKGAAVETVRIRYWKNY--PLSARPLAGIRSSDLAAWRDARLSEVSSSTV 123 Query: 134 IQFLTSMRVLFKWAVRQEYV-----AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + + + +F +++ + ++ P+ + ++ E + + Sbjct: 124 NREMNLISHVFTICIKEWGMASLVNPVSQIRRPRNPESRERRLQFGELEKILEHTDSQIL 183 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--IKTQKTGTIITVELPDGFMKLLA 246 G R A L +G+R + H+ I KTG TV L +++L Sbjct: 184 GPVVRFA----LETGMRRGEIASMRWDHVDVKKRVLLIPETKTGKSRTVPLTTEALRILN 239 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAH 305 P + + F+ +AG+ + + H +R + + + G Sbjct: 240 DLPRRLDGSIWGMTD----PHTMTRAFERACKRAGIEDLTFHDLRHEATSRFFEKGLNPM 295 Query: 306 ELMATYGWKTVDQAETYTK 324 ++ A G KT+ + YT Sbjct: 296 QVAAITGHKTLQMLKRYTH 314 >gi|229593315|ref|YP_002875434.1| site-specific tyrosine recombinase XerC [Pseudomonas fluorescens SBW25] gi|259710435|sp|C3K438|XERC_PSEFS RecName: Full=Tyrosine recombinase xerC gi|229365181|emb|CAY53449.1| tyrosine recombinase [Pseudomonas fluorescens SBW25] Length = 299 Score = 112 bits (280), Expect = 9e-23, Method: Composition-based stats. Identities = 36/295 (12%), Positives = 85/295 (28%), Gaps = 24/295 (8%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR------SGVESRK 127 + Y ++ ++ ++ ++++ I+ + + Sbjct: 5 LDAYCAHLRNERQVSPHTLEAYRRDLNKVLAYCEKQQISSWKALDIQSLRSLIARLHQAG 64 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + S + L+++R L+ + R+ +P + PK + + + Q Sbjct: 65 QSSRSLSRLLSAVRGLYHYLNREGLCDHDPANGLSPPKGERRLPKTLDTDRALQLLDGAV 124 Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFM 242 E + + E SGLR S+ + L K + + Sbjct: 125 EDDFLAHRDQAILELFYSSGLRLSELTGLNLDQLDLADGLVQVLGKGSKTRVLPVGRKAR 184 Query: 243 KLLAMTPIGKETFFINNDKQKMN-------ATQFSIWFKAKATK-AGVNKSAHGVRKFSA 294 + L + + +D ++ + KA + G N H +R A Sbjct: 185 EALQLWLPLRLLTNPADDAVFVSQQGRRLGPRAIQVRVKAAGERELGQNLHPHMLRHSFA 244 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG---IKNSRRISSVVDSD 346 + ++ + G + + YT D L R + D Sbjct: 245 SHMLESSQDLRAVQELLGHSDIKTTQIYTH-LDFQHLATVYDSAHPRAKRIKGGD 298 >gi|218129441|ref|ZP_03458245.1| hypothetical protein BACEGG_01018 [Bacteroides eggerthii DSM 20697] gi|254881363|ref|ZP_05254073.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA] gi|313145864|ref|ZP_07808057.1| integrase [Bacteroides fragilis 3_1_12] gi|317476187|ref|ZP_07935438.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] gi|217988171|gb|EEC54494.1| hypothetical protein BACEGG_01018 [Bacteroides eggerthii DSM 20697] gi|254834156|gb|EET14465.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA] gi|313134631|gb|EFR51991.1| integrase [Bacteroides fragilis 3_1_12] gi|316907598|gb|EFV29301.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] Length = 376 Score = 112 bits (280), Expect = 9e-23, Method: Composition-based stats. Identities = 50/356 (14%), Positives = 104/356 (29%), Gaps = 29/356 (8%) Query: 11 VTKERTRHGKIIY-----YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65 + + R+GK Y Y G R A S E Sbjct: 28 LYLDIYRNGKRTYEYLKLYLIPGTDSNTRRQNEITMAAANAIKSKRIIELTSGEAGIVNH 87 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGV 123 L + Y + I I+++ ++ + + Sbjct: 88 TDKIYLLDWMQTYLEYQEKRDKKG---IGQIKAVTHILKEYAGERFILDRVDLAFCQGYI 144 Query: 124 ESRKHT---------PSSAIQFLTSMRVLFKWAVRQEYVAINP---CLSVERPKRKTEGI 171 + T S+ + AVR + + NP E+PK Sbjct: 145 DYMLTTFRPKGKPIAASTRNTYYQIFNGALNAAVRAKRLLRNPFNEMEKSEKPKMPESVR 204 Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTG 230 T E+++ + + + + A+ F + GLR SD +++ + + Sbjct: 205 SYMTIEEVRALIATPMQEGRVKNAYLFSCFCGLRISDIVGLKWKNVFVDNGQYRLAVAMQ 264 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288 + L P ++ + + + + + A AG+ K + H Sbjct: 265 KTKEPIYLPLSNEALKWMPEREDKAADDPVFNL--PSNINQYLRPWAEAAGITKRFTFHT 322 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 R AT+ GA + + G +V + Y K ++ + + ++ + D Sbjct: 323 ARHTFATMMLTLGADLYTVSKLLGHTSVRMTQVYAKIINQKK--DEAVNLVNGLFD 376 >gi|254452582|ref|ZP_05066019.1| phage integrase [Octadecabacter antarcticus 238] gi|254454231|ref|ZP_05067668.1| phage integrase [Octadecabacter antarcticus 238] gi|198266988|gb|EDY91258.1| phage integrase [Octadecabacter antarcticus 238] gi|198268637|gb|EDY92907.1| phage integrase [Octadecabacter antarcticus 238] Length = 320 Score = 112 bits (280), Expect = 9e-23, Method: Composition-based stats. Identities = 42/261 (16%), Positives = 84/261 (32%), Gaps = 25/261 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA---IQFLTSMR 141 +L S+ S + G T ++ + + S Q +T ++ Sbjct: 39 RNLGPASQSSHLRACKRFAAWLGRSP-ETATPDDVKYFQQHLIESGVSICTRNQTMTGVK 97 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201 L + +R+ + E K +K+++++ + + R+ Sbjct: 98 FLLRVTLRRHDLVAEIFHLKEPVKV----PLVLSKKEIKRIL-AMAPSLKARVMLSLAYG 152 Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKT--GTIITVELPDGFMKLLAMTPIGKETFFINN 259 G+R + R V + ++ I+ ++ V LP + LL + T + Sbjct: 153 CGMRAGEVVRLKVGDIDSDQEIIRIVQSKGRKDRIVMLPVDILSLLRDWWQERPTGQDKD 212 Query: 260 DKQKM------------NATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305 +A Q S FK A +AG+ + H +R AT + G Sbjct: 213 VPAPERVLFPGYRGKHLSARQISRLFKETAREAGITKPVTLHTLRHSFATHLLERGVDIR 272 Query: 306 ELMATYGWKTVDQAETYTKGA 326 + A G + Y A Sbjct: 273 VIQALLGHSKLTTTARYASVA 293 >gi|146297702|ref|YP_001181473.1| phage integrase family protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145411278|gb|ABP68282.1| phage integrase family protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 327 Score = 112 bits (280), Expect = 9e-23, Method: Composition-based stats. Identities = 42/319 (13%), Positives = 100/319 (31%), Gaps = 46/319 (14%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT 129 +K ++ + +L ++ +ES + I+ G + + + +H+++ S+ + Sbjct: 3 VKDWLNTWLWEYKKQTLRPSTFQDYESLINNHIVPSIGHYKLKDLRPEHLQALYNSKHES 62 Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 S+ + A++ V N + PK KT+ + Q+ Sbjct: 63 GLSLSTIKHIHVILHSALDQALKNGLVVRNVSEATTLPKAKTKKEIRVLTLEEQKRFVAA 122 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------------- 232 EG + + AF L SG+R + + +I +++ Sbjct: 123 LEGERLKPAFLLALASGVRLGELLALKWDCVNLKEGTITIKRSLRRIKTYDKSLPTKTML 182 Query: 233 -----------ITVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNAT 267 T+ +P ++ L F + Sbjct: 183 AFQEPKTAAGIRTIPVPPVILEELKEHRKRQLEEKLKAGSLYEDNNLVFATELGTPIEPR 242 Query: 268 QFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGA 326 F F KA ++ + H +R AT +A + G + Y+ Sbjct: 243 NFLRVFYRIIEKANLDINFHALRHTYATRLLEANEHPKVVQELLGHNDISTTLNIYSHVM 302 Query: 327 DRIRLGIKNSRRISSVVDS 345 I+ + +++++ ++ Sbjct: 303 PEIKKA--AAMKLNNLFEN 319 >gi|114798167|ref|YP_761981.1| putative tyrosine recombinase XerC [Hyphomonas neptunium ATCC 15444] gi|114738341|gb|ABI76466.1| putative tyrosine recombinase XerC [Hyphomonas neptunium ATCC 15444] Length = 299 Score = 112 bits (280), Expect = 9e-23, Method: Composition-based stats. Identities = 39/293 (13%), Positives = 81/293 (27%), Gaps = 31/293 (10%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFD----YRKITTKHIRSGVESRKH 128 +Y +A + ++ S + G + + IR+ + R+ Sbjct: 9 DYLT--RERRMATKTVEAYGSDLSFFLAFLRVHMGAEPSPALLADVRARDIRAYLAERRR 66 Query: 129 TP---SSAIQFLTSMRVLFKWAVRQE--------YVAINPCLSVERPKRKTEGIRPWTKE 177 ++ + L+S++ L++W R Y+ + + E Sbjct: 67 EGLSDATVARILSSIKALYRWLDRAHGVGNAEVGYLQGPRRPQRLPRPVSIDAAKDLISE 126 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237 + G++ L GLR S++ + K G + V L Sbjct: 127 AENEPDQEPWIGARDAAVLSLLYGGGLRISEALSLTGADVPAPERLRIKGKGGKVRIVPL 186 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKM-------NATQFSIWFKAKATKAGVN--KSAHG 288 + + + N + G+ + H Sbjct: 187 IPAVRDAIHVYADICPWALTRDKPLFRGAKGGALNPRLIQGLMQRMRAYLGLPDTATPHA 246 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 +R AT GA + G ++ + YT G D RL ++ Sbjct: 247 LRHAFATHLLANGADLRAIQTLLGHASLSTTQVYT-GIDSSRLREVHAAAHPR 298 >gi|467161|gb|AAA50925.1| u0247d [Mycobacterium leprae] Length = 316 Score = 112 bits (280), Expect = 9e-23, Method: Composition-based stats. Identities = 46/277 (16%), Positives = 91/277 (32%), Gaps = 38/277 (13%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSGVESRKHT----------PS 131 S+A N+ S+ + + D D K+ + + + + Sbjct: 21 RSIAANTLSSYRRDLIRYSKHLSDRGIEDLAKVGEHDVSEFLVALRRGDPDSGVAALSAV 80 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS- 190 SA + L ++R L ++AV + V ++ +V P + T +++ S Sbjct: 81 SAARALIAVRGLHRFAVAEGLVDLDVARAVRPPTPGRRLPKSLTVDEVLALLESVGGESG 140 Query: 191 -------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFM 242 + R E L +G R S++ V + ++ K G V + + Sbjct: 141 ADGPLVLRNRALLELLYSTGSRISEAVGLDVDDVDTQARTVLLQGKGGKQRLVPVGRPAV 200 Query: 243 KLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSA 286 + L + F+N +++ + A AG+ S Sbjct: 201 QALDAYLVRGRSDLARRGPGMLATPAIFLNARGGRLSRQSAWQVLQDAAEHAGITSGVSP 260 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 H +R AT + GA + G +V + YT Sbjct: 261 HMLRHSFATHLLEGGADIRVVQELMGHASVTTTQIYT 297 >gi|75674591|ref|YP_317012.1| tyrosine recombinase XerD [Nitrobacter winogradskyi Nb-255] gi|74419461|gb|ABA03660.1| tyrosine recombinase XerD subunit [Nitrobacter winogradskyi Nb-255] Length = 319 Score = 112 bits (279), Expect = 9e-23, Method: Composition-based stats. Identities = 42/297 (14%), Positives = 88/297 (29%), Gaps = 39/297 (13%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVES 125 LI+ + N+ ++ + + T + + ++ Sbjct: 9 AKLIALFLDMLAAEQGAGENTLDAYRRDLEDLSAFLARARRNFVIAETQTLRDYLNDLDL 68 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 R SS + L++MR LF++ + + + +P + PKR + + D+ + Sbjct: 69 RGFKSSSVARRLSAMRHLFRFLLSERVRSDDPAAILSGPKRGRSLPKVLSIADVDRLLGR 128 Query: 186 WSEGS--------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-G 230 + + E L +GLR S+ + + + I + Sbjct: 129 AKADAESLDAPPARRLRAARLYCLLEVLYATGLRVSELVSLPLSAARRDARMIVVRGKGD 188 Query: 231 TIITVELPDGFMKLLAMTPIGK---------------ETFFINNDKQKMNATQFSIWFKA 275 V L + + +A F + + F+ K Sbjct: 189 KERLVPLNNASRQAMADYLQTMADQRGAGKAASPRQSWLFPSFGESGHLTRQHFARELKE 248 Query: 276 KATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 A AG+ S H +R A+ GA + G + + YT + Sbjct: 249 LAAAAGLAPRLVSPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEER 305 >gi|298206637|ref|YP_003714816.1| putative tyrosine recombinase [Croceibacter atlanticus HTCC2559] gi|83849267|gb|EAP87135.1| putative tyrosine recombinase [Croceibacter atlanticus HTCC2559] Length = 265 Score = 112 bits (279), Expect = 9e-23, Method: Composition-based stats. Identities = 35/256 (13%), Positives = 81/256 (31%), Gaps = 18/256 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----KHTPSSAIQFLTSM 140 LA N+ + +R +IT ++ + Q + + Sbjct: 4 KRLAQNTIDIYTEVTRIFLRYLSLKQADEITNIWVQRFNYDYIIGNGFGVAYQNQCINGI 63 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200 + + + + RPK+ + +KE++ Q + + L Sbjct: 64 KKFVSFLGKPLVLDTLV-----RPKKPQKLPVVLSKEEISQ-LFNVINNLKHKALLALLY 117 Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKT--GTIITVELPDGFMKLLAMTPIGKETFFIN 258 +GLR ++ + + + + I+ ++ L + F+ LL M + Sbjct: 118 SAGLRIGEALQLTPEAIDSKRMLIRIEQAKGNKDRYTLLSESFLTLLRMYYKKYKPKTYL 177 Query: 259 NDKQK---MNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYG 312 + Q ++ K AG+ + + H +R AT ++G + G Sbjct: 178 FEGQNGGAYTSSSAQKVLKRALRDAGITRIGVTLHTLRHSFATHLLESGTDLRYIQELLG 237 Query: 313 WKTVDQAETYTKGADR 328 + YT + + Sbjct: 238 HNSPKTTMIYTHVSSK 253 >gi|326799802|ref|YP_004317621.1| Tyrosine recombinase xerC [Sphingobacterium sp. 21] gi|326550566|gb|ADZ78951.1| Tyrosine recombinase xerC [Sphingobacterium sp. 21] Length = 293 Score = 112 bits (279), Expect = 9e-23, Method: Composition-based stats. Identities = 40/282 (14%), Positives = 95/282 (33%), Gaps = 25/282 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKHTP 130 + + + + ++ ++E ++ + ++ K +R + + Sbjct: 2 YVERFMSFLRFEKHYSEHTLKAYEKDVRSYLQFWVAEQISFEEVGHKQLRYYLSILMDSG 61 Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE------DMQQ 181 SS + L+S+R +K+ R+ NP L V+ K+ + ++ D Sbjct: 62 LEASSINRILSSLRTYYKFLQRESLYGANPTLLVKALKKPKKLPVVIQEDKLNQLLDHDH 121 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 EG + RL E L +G+R ++ + + + +I+ + Sbjct: 122 IFQDNFEGQRDRLIIELLFGTGMRLTELIQLQEKDIDYYNQTIRILGKRNKERIVPMLPH 181 Query: 242 MKLLAMTPIGKETFFINNDK----------QKMNATQFSIWFKAKA--TKAGVNKSAHGV 289 +KLL + + ++ ++ + KS H + Sbjct: 182 LKLLIEQYLKLKKIENLDNNSLTLVVTIKGKQAYPKLIYQVVIRYLSLITSQQKKSPHVL 241 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330 R AT + GA + + G + + YT +R++ Sbjct: 242 RHSFATALLNKGADLNAIKELLGHANLVATQVYTHNSVERLK 283 >gi|331085647|ref|ZP_08334730.1| hypothetical protein HMPREF0987_01033 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406570|gb|EGG86075.1| hypothetical protein HMPREF0987_01033 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 322 Score = 112 bits (279), Expect = 9e-23, Method: Composition-based stats. Identities = 35/271 (12%), Positives = 84/271 (30%), Gaps = 14/271 (5%) Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 +K+ T + + + + + + D++++K RKI+T+ IR + Sbjct: 38 QKEEVTNDEYLQLFLDAKRIEGCSERTIQYYSVTVDKMLQKI-QTPVRKISTEEIRKYLV 96 Query: 125 SRK----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + + + ++ F W ++Y+ +P + + K K + E ++ Sbjct: 97 DYQKINDCSKVTVDNVRRNISSFFSWLEEEDYILKSPMRRIHKIKTKQPVKEIISDEAIE 156 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--TGTIITVELP 238 + + + L +G+R + + + Sbjct: 157 MLRDHCQC-PRDLAMIDLLYSTGIRVGELVNLNISDVDFEARECVVFGKGDKERRVYFDA 215 Query: 239 DGFMKLLAMTPIGKETFFINN-----DKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKF 292 + LL K+ ++ + I + K + K H R+ Sbjct: 216 KAKLHLLNYLSERKDNNPALFVTLDAPYDRLKISGVEIRIRTLGRKLNMEKIHPHKFRRT 275 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYT 323 AT + D G ++ G +D Y Sbjct: 276 MATRAIDKGMPIEQVQKLLGHSQIDTTMQYA 306 >gi|323978150|gb|EGB73236.1| phage integrase [Escherichia coli TW10509] Length = 317 Score = 112 bits (279), Expect = 9e-23, Method: Composition-based stats. Identities = 45/304 (14%), Positives = 91/304 (29%), Gaps = 18/304 (5%) Query: 28 GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87 G+RIR + Y + E+ + + L LI + K Sbjct: 6 RKGKRIR-KKFKTKSDAVLYERWVLAQLHNNEWKGNSIDRRP-LSVLIDLWWKYHGQLMK 63 Query: 88 A-VNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMRVL 143 + N+ ++ D K+ T + R + PS+ + + ++ + Sbjct: 64 SGHNT----RLKLLRLSEAMDDPCVHKLNTTMLTELRVSRIEQGIQPSTINREIGALSAM 119 Query: 144 FK-WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202 F ++ NP ++ K + +K + Q +E RLA E LL + Sbjct: 120 FTALISSGHFLNDNPIQGLKGMKVNEREMGYLSKSECVQLLDALAENPDERLAVEILLST 179 Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262 G R + + + + + K TV + + + + ++ Sbjct: 180 GARWGEVAALEQRRVLHCRITFSKTKNSKNRTVPISESLFEKIKKRGGKLVFPTLD---- 235 Query: 263 KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 + K A ++ H +R A+ G L G + Y Sbjct: 236 ---YSLVRDVIKTVAPDVPDGQAVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIY 292 Query: 323 TKGA 326 A Sbjct: 293 AHLA 296 >gi|315655029|ref|ZP_07907933.1| integrase/recombinase XerD [Mobiluncus curtisii ATCC 51333] gi|315490685|gb|EFU80306.1| integrase/recombinase XerD [Mobiluncus curtisii ATCC 51333] Length = 323 Score = 112 bits (279), Expect = 9e-23, Method: Composition-based stats. Identities = 37/290 (12%), Positives = 82/290 (28%), Gaps = 41/290 (14%) Query: 85 GSLAVNSRISFESYFDQIIRKS-----GD------FDYRKITTKHIRSGVESR---KHTP 130 L+ + ++ + +++ GD IR+ + + + Sbjct: 26 RGLSPQTVRAYLTDLRELMTFLVDSDSGDGPTAQQLRVDLANPARIRAWLGAMSRAGMSR 85 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----- 185 ++ + + S R WA ++ V + ++ + + D Sbjct: 86 ATLARRVASFRTFSSWAQVRDIVPGDAGQNLRAMRPDNALPTVLSATDAAHLLETARVAA 145 Query: 186 --------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236 + A E L +G+R S+ + ++ + +I+ V Sbjct: 146 YPEASTAPNPVKLRDWAALELLYATGIRVSELTGLELGNINKSQRTIRVTGKGDKQRVVP 205 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNA------------TQFSIWFKAKATKAGVN- 283 L +N +K +N +AGV Sbjct: 206 YGIPAGLALEEYLEKGRPALVNPEKPALNRVFLGAKGGMLDTRIVRGMLHRLTAQAGVPD 265 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 HG+R +AT D GA + G ++ + YT + + Sbjct: 266 LGPHGLRHTAATHLLDGGADLRSVQEILGHASLATTQRYTHLSMDKLRAV 315 >gi|255016170|ref|ZP_05288296.1| integrase [Bacteroides sp. 2_1_7] Length = 420 Score = 112 bits (279), Expect = 9e-23, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 96/302 (31%), Gaps = 18/302 (5%) Query: 46 AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-- 103 Y SA+ + + E + + S + + + +++ + + Sbjct: 106 EYDSAILYTDKENEIAAQNERSEQDFIKYFNR-IISTRHPNSSDSIIVNWRRVGELLKMY 164 Query: 104 --------RKSGDFDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMRVLFKWAVRQEY 152 + I +R+ + K + ++A + + ++ K A EY Sbjct: 165 SQGQPIPFKTISVKLLEDIKMFLLRAPMGGNKKGTISQNTASTYFSILKAGLKQAFIDEY 224 Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212 + ++ V+ + T ++Q + + AF F + +GLR SD Sbjct: 225 LTVDISAKVKGITNIEKPRVALTMNEVQMLVDTPCKDDVLKRAFLFSILTGLRHSDIQTL 284 Query: 213 GVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS 270 + +Q + + L + I + + +A+ S Sbjct: 285 RWKQIQQTSKGTWQAVVIQQKTKRPDYKPVIQQALQLCGIRPDDDEALVFEGLTDASWIS 344 Query: 271 IWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 K +G+ K + H R A++ + G + + + G V + YT + Sbjct: 345 RPLKVWIEASGIKKHITFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHIVNE 404 Query: 329 IR 330 + Sbjct: 405 QK 406 >gi|119383712|ref|YP_914768.1| phage integrase family protein [Paracoccus denitrificans PD1222] gi|119373479|gb|ABL69072.1| phage integrase family protein [Paracoccus denitrificans PD1222] Length = 359 Score = 112 bits (279), Expect = 9e-23, Method: Composition-based stats. Identities = 81/337 (24%), Positives = 133/337 (39%), Gaps = 26/337 (7%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT--L 71 R + G + + + G IRLP P ++SA + ++P+ T L Sbjct: 7 RRQKRGDKVIRYHRATG--IRLPDDI-PETHPDFVSAWARCEAGQGQPDAPKAPAPTGSL 63 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KHTP 130 +R S + + R + I + G + I KHI + + P Sbjct: 64 AAACIAFRGSPSFKEQSPVYRDILTRNIEAIRGEYGHVAIKAIKAKHISADLAKLAGTRP 123 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 S L + R + A R + +P L+V+ PK K +G + WT+ D++ F+ W G+ Sbjct: 124 LS---RLKTWRKVMDHARRTGLIEEDPSLTVKAPKVKLKGHQVWTEGDIEVFRGKWKIGT 180 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHL---------------QNNIFSIKTQKTGTIITV 235 R FE LL++ R D+ R G QH+ + T Sbjct: 181 VQRACFELLLWTAARTVDAVRIGPQHVGKDGVLSFRQSKTGGMAYVPWTATLPNWGAGWA 240 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSA 294 + M+ L G + + S A A +A + ++AHG+RK Sbjct: 241 DERREMMEALRCLAGGLTFLQARGAR-PRSEKGLSNLISAAAREAKLEGRTAHGLRKARL 299 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 T A+AG +AH + + G KT+ +A YT+ AD RL Sbjct: 300 TRIAEAGGSAHAIKSWGGHKTLAEAAHYTESADAKRL 336 >gi|188496064|ref|ZP_03003334.1| integrase [Escherichia coli 53638] gi|188491263|gb|EDU66366.1| integrase [Escherichia coli 53638] Length = 357 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 63/345 (18%), Positives = 112/345 (32%), Gaps = 23/345 (6%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63 LPP + R+ Y G+ L A + + + R Sbjct: 9 RRDLPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAVSEAIQANIELLSENRRESLI 65 Query: 64 PR---KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 R TL + Y + + + + S I RK D I+TK + Sbjct: 66 DRIKGADAITLHAWLDRYETILSERGIRPKTLLDYASKIRAIRRKLPDKPLNDISTKEVA 125 Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + + + +SA +++ +F+ A+ + +VA NP + K + R E Sbjct: 126 AMLNTYVAEGKAASAKLIRSTLVDVFREAIAEGHVATNPVTATRTAKSEVRRSRLTANEY 185 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 ++ + + RLA + + +G R D CR + +N I+ KTG I + L Sbjct: 186 IEIYHAAEPLPIWLRLAMDLAVITGQRVGDLCRMKWSDINDNHLHIEQGKTGAKIAIPLT 245 Query: 239 DGFMKL---------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NK 284 L G ET + + ++ S +F +G+ Sbjct: 246 LTIDALNISLVDTLQKCREASGSETVIASTHHEPLSPKTVSKYFTKARNASGLSFDGDPP 305 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + H +R SA G K+ A Y R Sbjct: 306 TFHELRSLSA-RLYRNQIGDKFAQRLLGHKSDSMAARYRDSRGRE 349 >gi|167945040|ref|ZP_02532114.1| tyrosine recombinase XerD [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 227 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 30/209 (14%), Positives = 72/209 (34%), Gaps = 17/209 (8%) Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGS 190 + + ++R +K+ ++++ ++ +P +++ PK + ++M + G Sbjct: 5 RHIITIRGFYKFLIKEKLISFDPVKNIDIPKTGLSLPEVISSKEMELLIDSVDTKNPRGL 64 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE----------LPD 239 + E L +GLR S+ ++++ I+ V Sbjct: 65 RNAAMLETLYGAGLRVSELVSMKMENINLEASFIRIFGKGSKERIVPIGSFAIEKVRNWI 124 Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297 + + + I F+ + M F K + +G+ + H R AT Sbjct: 125 MHGRPIILKNIPSHYLFVARAGKPMTRQGFWKLLKKYSRASGISKKITPHTFRHSFATHL 184 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGA 326 + GA + G + + YT + Sbjct: 185 LEGGADLRSVQTMLGHSDISTTQIYTHVS 213 >gi|23502879|ref|NP_699006.1| site-specific tyrosine recombinase XerD [Brucella suis 1330] gi|161619947|ref|YP_001593834.1| site-specific tyrosine recombinase XerD [Brucella canis ATCC 23365] gi|254705035|ref|ZP_05166863.1| site-specific tyrosine recombinase XerD [Brucella suis bv. 3 str. 686] gi|23348908|gb|AAN30921.1| integrase/recombinase XerD [Brucella suis 1330] gi|161336758|gb|ABX63063.1| tyrosine recombinase XerD [Brucella canis ATCC 23365] Length = 307 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 84/289 (29%), Gaps = 33/289 (11%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR---K 127 I + + A N+ S+ + + + + T HIR +++ Sbjct: 6 AIENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKGVNLAEAETGHIRMTLDTMAAQG 65 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185 P+S + L+++R F++ + + +P ++ PK++ + + E++ + Sbjct: 66 FAPTSQARRLSALRQFFRFLYSEGFRQDDPTGILDAPKKQKPLPKIMSVENVGRLLDRAA 125 Query: 186 -----------WSEGSQPRLAFEFLLYSGLRCSDSC-------RAGVQHLQNNIFSIKTQ 227 + + E L +GLR S+ R + L K + Sbjct: 126 LEANEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKGSKDR 185 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---- 283 L + G + + F + Sbjct: 186 MVPLSRKARDALQKFLTLRDSLPGSDDNPWLFPAFSESGHLARQVFARELKGLAARAGLA 245 Query: 284 ---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 S H +R A+ GA + G + + YT + Sbjct: 246 ASSVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEER 294 >gi|316931928|ref|YP_004106910.1| tyrosine recombinase XerD [Rhodopseudomonas palustris DX-1] gi|315599642|gb|ADU42177.1| tyrosine recombinase XerD [Rhodopseudomonas palustris DX-1] Length = 327 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 46/291 (15%), Positives = 93/291 (31%), Gaps = 35/291 (12%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIR---SGVESRK 127 L + + N+ ++ + T +R + ++ R Sbjct: 22 LTELFLDMIAAEQGASANTLDAYRRDLADLSHFLSRRRLSIGAADTAALRGYLADLDKRG 81 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 SS + L+++R LF++ + + A +P + PKR + + D+ + + Sbjct: 82 FATSSVARRLSALRHLFRFLLSERIRADDPAAILAGPKRGRSLPKVLSIADVDRLLACAR 141 Query: 188 E-------GSQPRLAFEFLLY-----SGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIIT 234 + ++ R A L +GLR S+ + + + I + Sbjct: 142 QEADAAEGAARLRAARLNCLLEVLYATGLRVSELMALPLSAARRDARIIVVRGKGDKERL 201 Query: 235 VELPDGFMKLLAMTPIG-------------KETFFINNDKQKMNATQFSIWFKAKATKAG 281 V L G + +A K F D + F+ K A +AG Sbjct: 202 VPLNAGAKQAMARYLEEVAAVAKDPKGASSKWLFPSFGDSGHLTRQHFARDLKDLAARAG 261 Query: 282 VN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 ++ S H +R A+ GA + G + + YT + Sbjct: 262 LSPRLVSPHVLRHAFASHLLHNGADLRIVQTLLGHSDISTTQIYTHVVEER 312 >gi|256617053|ref|ZP_05473899.1| phage integrase [Enterococcus faecalis ATCC 4200] gi|256853752|ref|ZP_05559117.1| phage integrase [Enterococcus faecalis T8] gi|256596580|gb|EEU15756.1| phage integrase [Enterococcus faecalis ATCC 4200] gi|256710695|gb|EEU25738.1| phage integrase [Enterococcus faecalis T8] Length = 380 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 42/363 (11%), Positives = 112/363 (30%), Gaps = 45/363 (12%) Query: 11 VTKERTRHGKIIYYFR--KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI---NSPR 65 ++K + ++G++ + ++ R + A R I + Sbjct: 4 ISKYKKKNGQVAWMYKGHIATDPRTGEKINTTRRGFSSKQEAQKDYDEYRHQILYGVKKK 63 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRI-SFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 T + L +E+ S+ ++ S +Q++ G I+ + + V+ Sbjct: 64 APDMTFEDLYNEWITHQR-TSVKASTIAISVRYANNQVLPAFGKLKLSNISVPYCQKVVD 122 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG--IRPWTKEDMQQF 182 S + ++ V +Y+ NP P++K + ++KE++ Sbjct: 123 EWHSKYESYDYMRKQTAQILRYGVAMQYIDNNPMEKTLLPRKKEYEKNRKFYSKEELNNL 182 Query: 183 KSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--------------- 225 + + + F L Y+G+R S+ + + + Sbjct: 183 LDAFKDFGNMKQYAFFRLLAYTGMRKSEVLALQWKDIDTFNKELHVNKTLAVDEFGKVII 242 Query: 226 --TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN---------------ATQ 268 + + + L + +L + ++ ++ + Sbjct: 243 QSPKTRASRRVISLDTETLSILNNWKLQQKEEYLKLGYNTSSKEQHVFTTVKNTLYIPNT 302 Query: 269 FSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGA 326 + W + K + + + HG R A++ +AG + + G + + Y Sbjct: 303 VNDWLRYILKKYNLPRITPHGFRHTHASLLLEAGESVKVVQQRLGHENSKVTLDIYAHIT 362 Query: 327 DRI 329 + Sbjct: 363 NNA 365 >gi|297626642|ref|YP_003688405.1| Integrase/recombinase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922407|emb|CBL56979.1| Integrase/recombinase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 308 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 43/290 (14%), Positives = 95/290 (32%), Gaps = 29/290 (10%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHT- 129 L ++Y + + N+ ++ + ++ G D + +R + S++ + Sbjct: 17 LFADYLRLQ--RRRSANTERAYLTDLRELALFLQGRGVHDPDHVRLTDLRRWLASQQASE 74 Query: 130 -PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187 P++ + + RV F WA + +P + PK + T+ ++++ + Sbjct: 75 APATVARRAGTARVFFGWARETGRLGTDPAAGLRSPKLGRRLPQTLTQTEVRELMDAAAA 134 Query: 188 --------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELP 238 G + E L SGLR S+ C V L ++ V L Sbjct: 135 AAAEAGGVRGLRDVAILETLYGSGLRVSELCGLDVGDLDEARGLVRVIGKGDKERIVPLG 194 Query: 239 DGFMKLLAMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKAG--VNKSAH 287 ++ + ++ + ++N + H Sbjct: 195 LPGLRAIDAWRAVRDQWVAPASANALFLGTRGGRINQRVVRRVVHESMRAVPEAPDIGPH 254 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI-RLGIKNS 336 G+R AT + GA + G ++ + YT +D R + + Sbjct: 255 GLRHAMATHLLEGGADLRSVQEMLGHASLSTTQIYTHVSDERVRAAYEQA 304 >gi|229497057|ref|ZP_04390761.1| site-specific recombinase, phage integrase family/ribosomal subunit interface protein [Porphyromonas endodontalis ATCC 35406] gi|229315982|gb|EEN81911.1| site-specific recombinase, phage integrase family/ribosomal subunit interface protein [Porphyromonas endodontalis ATCC 35406] Length = 398 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 39/295 (13%), Positives = 94/295 (31%), Gaps = 26/295 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKI-----TTKHIRSGVESR-- 126 I + + + + ++ ++E Q +R + + IR + S Sbjct: 6 IERFLGYLRYERNQSEHTVAAYELDLQQYVRYVEEVLGEEFVPSDGDRDLIRGFLSSLIE 65 Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 SS + L+S++ +++ V+ + +P V P+ ++ +++++ Sbjct: 66 QGRKRSSVHRKLSSLKSYYRYLVKIGLLEQSPARLVRGPRGESPLPAVLSEQEISNLLYA 125 Query: 186 WSEG------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------- 232 + +L E +G+R S+ + + ++ G Sbjct: 126 QEVDKDDFVALRNQLILEMFYETGMRRSELVGLLEGGVDLSSRVLRVFGKGRKERIIPFG 185 Query: 233 -ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA-GVNKS-AHGV 289 ++ L + FF++ Q ++ + G+ + H + Sbjct: 186 DRLAARISEYLALKHQKVGLSQIFFVSLGNQPLSGEVVYQIVHERLQSIPGLARRGPHVL 245 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISSVV 343 R AT + GA + G K+V YT ++ R S Sbjct: 246 RHTFATAMLNNGAQLMAVKELLGHKSVATTVLYTHTSLAELQQMYNAHPRASKKK 300 >gi|153955537|ref|YP_001396302.1| Phage integrase-related protein [Clostridium kluyveri DSM 555] gi|219855933|ref|YP_002473055.1| hypothetical protein CKR_2590 [Clostridium kluyveri NBRC 12016] gi|146348395|gb|EDK34931.1| Phage integrase-related protein [Clostridium kluyveri DSM 555] gi|219569657|dbj|BAH07641.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 392 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 53/391 (13%), Positives = 114/391 (29%), Gaps = 59/391 (15%) Query: 11 VTKERTRHGKIIYYF-----RKGHGRR--IRLPYPHESTFIPAYMSALTGSTPKREYINS 63 + + ++GKI+Y RK G R +R Y + K + Sbjct: 5 IKSRKLKNGKIVYDIIVDLPRKSDGSRNQLRKRGFKSKKEAQLY---IADVIMKSSNGYN 61 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 LK + + K+ SL+ +++ + + I G+ K+T I+ Sbjct: 62 FSGDKILLKEYLKRWLKT-EGSSLSPSTQKRYNEFCVHISNHLGEIPISKLTGLQIKEFY 120 Query: 124 E-----------SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 + + + S+ ++ + AVR + +++ + + Sbjct: 121 KNLEQPQVYSNFKKGLSRSTILKVHRMLHKALTDAVRDGTIDRTVISNIKYGSVEKTETK 180 Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 W F E L +GLR S+ + + N + ++ Sbjct: 181 VWDNSTFYSFLDKIKEELI-YLPVLLAFETGLRQSEITGLKWEDIDINKKLLTVKRNYGY 239 Query: 233 ------------------ITVELPDGFMKLLAMTPIGKE--------------TFFINND 260 + L D ++ L + ++ Sbjct: 240 DALKKSLSDKKTKTKSSLRVINLFDNTIENLKKQKQQQRLNKLLYGKAYIESGYICTTSN 299 Query: 261 KQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-Q 318 +N S F K K H +R AT+ + G ++ Sbjct: 300 GNPINPLYISKRFAQLVKKHNFKKIRFHDLRHSHATMLLKENVHPKIVSQRLGHSSIAIT 359 Query: 319 AETYTKGA-DRIRLG-IKNSRRISSVVDSDD 347 +TYT + D + + + +IS ++ + Sbjct: 360 LDTYTHVSTDIEKNALLSANEKISQYIEEKE 390 >gi|258509091|ref|YP_003171842.1| phage-related integrase [Lactobacillus rhamnosus GG] gi|257149018|emb|CAR87991.1| Phage-related integrase [Lactobacillus rhamnosus GG] gi|259650380|dbj|BAI42542.1| phage integrase [Lactobacillus rhamnosus GG] Length = 360 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 40/337 (11%), Positives = 94/337 (27%), Gaps = 29/337 (8%) Query: 17 RHGKIIYY---FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 + GK+ Y ++ G+ +L A ++A + I + TL Sbjct: 6 KRGKVWQYEISYKDLDGKFKKLRKSGFPRKSDAELAA-SQVKSFYLDIKQYQAGAITLSE 64 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--SRKHTPS 131 + S+ + I +E+ I + G R +T + + ++ H P Sbjct: 65 YFDRWIHLYKKNSVTAVTFIKYENTLSHIKQLFGGILLRDLTRTLYQERLNIFAQNHAPR 124 Query: 132 SAIQFLTSMRV-LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 + F +R L + ++ + + R ++ +Q + Sbjct: 125 TVAAFHKQIRAALLDAVDERIIHLDPTRKAIISGRPISATKRALDYQEWRQLIQGLDTSN 184 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF------MKL 244 ++ +G+R ++ + I KT + Sbjct: 185 TEQMIIYIAAVTGMRYAEVLGLTKSDIDLTSGEISINKTWDYKYHTGFKKTKNTSSVRSV 244 Query: 245 LAMTPIGKETFFINNDKQKMNATQ--------------FSIWFKAKATKAGVNK-SAHGV 289 + + ++ + K G+ + + HG+ Sbjct: 245 VLNPASIMKLAHFLELHNPESSQTPIFASNGHSLVSAEINKVLTQKLKSLGLPRITFHGL 304 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAE-TYTKG 325 R A+I G + + G + + TY Sbjct: 305 RHTHASILLYQGVSVLSVSKRLGHSNITTTQATYLHV 341 >gi|310779869|ref|YP_003968201.1| integrase family protein [Ilyobacter polytropus DSM 2926] gi|309749192|gb|ADO83853.1| integrase family protein [Ilyobacter polytropus DSM 2926] Length = 362 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 57/345 (16%), Positives = 102/345 (29%), Gaps = 41/345 (11%) Query: 11 VTKERTRHGKIIYYF-RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 V K+ + +++Y F + G ++ + + + + Sbjct: 3 VYKD-GKKWRVVYTFNQCGELKQSQKRGFKTKKEASLW--------ESEHKLKGSKSVNM 53 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESR-- 126 T Y +A + E F I+ + KIT IR Sbjct: 54 TFTSFYDLYMGDIKPR-VAETTYHLKELIFKNSILPYFQNMKMSKITPIIIRDFQNKLIT 112 Query: 127 --------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKE 177 + + + L AV + NPC K R + I WT E Sbjct: 113 GTNPKTGNPYKAHYIQKINAQLSALMNHAVNFYELKENPCKKAGPLKLRYDKKINFWTLE 172 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----- 232 + ++F AF L ++G+R + + + +K K+ Sbjct: 173 EFEKFTEVIEHKPMSYTAFNILFWTGIRVGELLALTLSDVDLKKGIMKIDKSYARLKGKN 232 Query: 233 -----------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 T++LP ++LL + M F KAG Sbjct: 233 IIKSTKNESSERTIKLPQNLVELLKKYVKMMYGLTQEDRLFPMTKEVFKNDLVRYCDKAG 292 Query: 282 VNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 V K + H +R A++ ++G + G VD TY+ Sbjct: 293 VKKITPHDLRHSHASLLINSGINPLAISKRLGHAKVDMTLNTYSH 337 >gi|254452119|ref|ZP_05065556.1| phage integrase [Octadecabacter antarcticus 238] gi|198266525|gb|EDY90795.1| phage integrase [Octadecabacter antarcticus 238] Length = 317 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 42/261 (16%), Positives = 84/261 (32%), Gaps = 25/261 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA---IQFLTSMR 141 +L S+ S + G T ++ + + S Q +T ++ Sbjct: 39 RNLGPASQSSHLRACKRFAAWLGRSP-ETATPDDVKYFQQHLIESGVSICTRNQTMTGVK 97 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201 L + +R+ + E K +K+++++ + + R+ Sbjct: 98 FLLRVTLRRHDLVAEIFHLKEPVKV----PLVLSKKEIKRIL-AMAPSLKARVMLSLAYG 152 Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKT--GTIITVELPDGFMKLLAMTPIGKETFFINN 259 G+R + R V + ++ I+ ++ V LP + LL + T + Sbjct: 153 CGMRAGEVVRLKVGDIDSDQEIIRIVQSKGRKDRIVMLPVDILSLLRDWWQERPTGQDKD 212 Query: 260 DKQKM------------NATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305 +A Q S FK A +AG+ + H +R AT + G Sbjct: 213 VPAPERVLFPGYRGKHLSARQISRLFKETAREAGITKPVTLHTLRHSFATHLLERGVDIR 272 Query: 306 ELMATYGWKTVDQAETYTKGA 326 + A G + Y A Sbjct: 273 VIQALLGHSKLTTTARYASVA 293 >gi|163747117|ref|ZP_02154473.1| tyrosine recombinase XerD [Oceanibulbus indolifex HEL-45] gi|161379678|gb|EDQ04091.1| tyrosine recombinase XerD [Oceanibulbus indolifex HEL-45] Length = 327 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 40/272 (14%), Positives = 88/272 (32%), Gaps = 32/272 (11%) Query: 90 NSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRKHTPSSAIQFLTSMRVLF 144 N+++++ ++ +T + +++ S+ + L++++ L+ Sbjct: 28 NTQLAYGRDLKDFDAFLARQNHDFLTASRGEVEDYLVYCDAQGLAKSTRARRLSAIKQLY 87 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL-------AFE 197 ++A + NP + + P + + ++E++ + + E Sbjct: 88 RFAFEEGLREDNPAVQIAGPGQDRRLPKILSEEEVDRLLDAARNSGRALADQLRNTCLME 147 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKLLAMT-------- 248 L +G+R S+ V + + + + K G V L + LA Sbjct: 148 LLYATGMRVSELVSLPVSAARGDPRLLLISGKGGRERLVPLSEPARDALAAWLVVRDKAD 207 Query: 249 --------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATIS 297 P + F + +F + K A GV + H +R AT Sbjct: 208 EAAQAKGKPPARHLFPSRGVMGHLTRHRFYLLIKEFAVTGGVPPEKVTPHTLRHAFATHL 267 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRI 329 GA + G V E YT + Sbjct: 268 LANGADLRAIQTMLGHADVATTEIYTHVLEER 299 >gi|238798591|ref|ZP_04642067.1| Tyrosine recombinase [Yersinia mollaretii ATCC 43969] gi|238717547|gb|EEQ09387.1| Tyrosine recombinase [Yersinia mollaretii ATCC 43969] Length = 263 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 42/245 (17%), Positives = 78/245 (31%), Gaps = 17/245 (6%) Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 + G ++ + +RS V K SS L+++R W V Q + NP Sbjct: 5 EQMGLAHWQTLDAAQVRSLVSRSKRAGLHASSLALRLSALRSFLNWLVSQGVLQANPAKG 64 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHL 217 V P+ + +++ + + R E + +GLR S+ +H+ Sbjct: 65 VSTPRSGRHLPKNIDVDEVDKLLDIDLNDPLAVRDRAMLEVMYGAGLRLSELVGMNCKHV 124 Query: 218 Q-NNIFSIKTQKTGTIITVELPDGFMKLLAMT-------PIGKETFFINNDKQKMNATQF 269 K V + + L + F+ N ++++A Sbjct: 125 DLVGGEVWVMGKGSKERKVPIGRTAVTWLNHWLALRELFEPQDDAIFLANTGKRISARNV 184 Query: 270 SIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 F K GV + H +R AT ++ + G + + YT D Sbjct: 185 QKRFAEWGVKQGVSSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTH-LD 243 Query: 328 RIRLG 332 L Sbjct: 244 FQHLA 248 >gi|148977142|ref|ZP_01813782.1| site-specific recombinase, phage integrase family protein [Vibrionales bacterium SWAT-3] gi|145963611|gb|EDK28873.1| site-specific recombinase, phage integrase family protein [Vibrionales bacterium SWAT-3] Length = 434 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 49/335 (14%), Positives = 103/335 (30%), Gaps = 22/335 (6%) Query: 10 FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 V G+ +Y L + T + P + Sbjct: 32 GVRVYTD--GR-RFYVTHLSIPNKTLAAVGQLTLKKVRQHVRALQASFLDKETKPIRLIR 88 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKH 128 L+ E ++++ + S + ++ + G F I + H+ + Sbjct: 89 -FDALVKEEWADKVCKGWKLSTQGTASSALKKNLLPEFGRFPVSCIDSCHVHRWFDELSQ 147 Query: 129 T-PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + +A + L +R +FK+AV+Q Y NPC +++ +++ E + K+ Sbjct: 148 SYAGTANRNLDVLRSIFKYAVKQGYCIDNPCDGLKQNRKRKLNRFLSLDELARLHKALTV 207 Query: 188 EGSQPRLAFEFL------LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 Q L L +G R S+ ++ + + KTG + Sbjct: 208 VSQQGELEACCCQVLELVLLTGCRISEVTGLQWSFVKGREWHLPDSKTGAKVVYVGK-EA 266 Query: 242 MKLLAMTPIGKETFFINNDKQKMNA--------TQFSIWFKAKATKAGV-NKSAHGVRKF 292 +LL+ P + T+ S+ ++ A + + H +R Sbjct: 267 QQLLSDIPQQVGAHRSESHDDVFTPLRRFVSRSTKVSMVWQQVRALAHIEDVRIHDLRHT 326 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 A+ + G + G + Y D Sbjct: 327 FASYAVLEGYPIPMVSKLLGHTRISSTLRYAHVDD 361 >gi|118725028|ref|NP_720381.2| phage integrase family site specific recombinase [Shewanella oneidensis MR-1] gi|112949651|gb|AAN52981.2| site-specific recombinase, phage integrase family [Shewanella oneidensis MR-1] Length = 456 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 52/313 (16%), Positives = 111/313 (35%), Gaps = 15/313 (4%) Query: 27 KGHGRRIRLPYPHESTFIPAYMSALTGSTP--KREYINSPRKKPTTLKWLISEYRKSAHW 84 + R R+ P + + A TG + E+ + + K + Sbjct: 49 IDNRTRTRILAPVSALTVKAAREKATGQLQAWREEHTQPSMSASPRFDVFVEQTWKPMIF 108 Query: 85 GSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTP-SSAIQFLTSMRV 142 +++ S +++ G + I K +++ + T +A + L +++ Sbjct: 109 EHWKPSTKRSVLPALNRRLLAHFGRYPLHMINHKMVQAWFDEISKTRKGAANRNLDTLQS 168 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-----FKSFWSEGSQPRLAFE 197 +FK A+RQ + NPC+ + + ++ R + +MQ+ + GS + A Sbjct: 169 VFKLALRQGHCLTNPCIGIRQ-NKRRVLNRFLSVAEMQRLSVALDECEAVGGSIAQCADV 227 Query: 198 FLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255 L +G R S+ ++++ N + KTG + + K Sbjct: 228 LRLLLLTGCRLSEITFLKGEYVRGNELHLPDSKTGAKVLYIGQAAVD--ILSRYHCKANT 285 Query: 256 FINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWK 314 + KQ + + + + GV + H +R A+ + G + + + G K Sbjct: 286 ELFPMKQGASTSLVQSLWLRLRKQIGVEDVRLHDLRHTFASYAVMDGCSIPMVASLLGHK 345 Query: 315 TVDQAETYTKGAD 327 V YT D Sbjct: 346 KVTMTLRYTHVGD 358 >gi|291551222|emb|CBL27484.1| Site-specific recombinase XerD [Ruminococcus torques L2-14] Length = 327 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 38/291 (13%), Positives = 90/291 (30%), Gaps = 14/291 (4%) Query: 45 PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR 104 L + E + + + + L+ + + + + + + ++ Sbjct: 23 ERLQEVLQYTLFDYEVTKIKKDEELSEQNLVESFLSAKRIEGCSEKTLKYYNATIQSMLD 82 Query: 105 KSGDFDYRKITTKHIR----SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 G + I T IR +K + + + F W ++Y+ +P Sbjct: 83 GIG-KSIKYIVTDDIRCYLTEYQAKKKSSKVTIDNIRRILSSFFSWLEDEDYILKSPVRR 141 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220 + + K T ++ E ++ + +E + + L +G+R + + + N Sbjct: 142 IHKVKTGTNIKETYSDEALELMRDNCTE-LRDLAMIDMLASTGMRVGEMVLLNREDIDFN 200 Query: 221 IFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFI------NNDKQKMNATQFSIWF 273 V L ++ + +MN + Sbjct: 201 ERECVVFGKGDKERIVYFDARTKIHLQNYLNSRKDDNPALFVSLQSPHNRMNIGGIEVRL 260 Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + + G+NK H R+ AT++ D G +L G + +D Y Sbjct: 261 RQLGKRLGLNKVHPHKFRRTLATMAIDKGMPIEQLQQLLGHRRIDTTLQYA 311 >gi|254563619|ref|YP_003070714.1| ptyrosine recombinase xerC, integrase/recombinase Ripx [Methylobacterium extorquens DM4] gi|254270897|emb|CAX26902.1| ptyrosine recombinase xerC, integrase/recombinase Ripx (xerC) [Methylobacterium extorquens DM4] Length = 365 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 47/312 (15%), Positives = 95/312 (30%), Gaps = 35/312 (11%) Query: 71 LKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSG 122 L+ + +R++ A +A N+ ++E Q + + + +R+ Sbjct: 23 LRAAMRGWREALARERRMAANTVEAYERDLRQFLIHRAARSGTPTIAGLIALKPRDLRAF 82 Query: 123 VESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT---- 175 + +R+ S ++ L +R ++ R+ + ++ +V PK + RP Sbjct: 83 MAARRAEGIGGRSLMRMLAGLRSFARFLEREGHGSVAALGAVRSPKVERRLPRPLPISAA 142 Query: 176 -----KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCR--AGVQHLQNNIFSIKTQK 228 E ++ L SGLR S++ A + T K Sbjct: 143 LAMTAPETRPDDDRAPWVLARDAAVIALLYGSGLRISEALGLTARDAPMPGIDEVRVTGK 202 Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAG 281 G + V + + +A ++ A G Sbjct: 203 GGKVRAVPVLPAVAEAVAAYLSLCPHPLDPEGPLFVGVKGGPLSPRVVQYAVSALRGALG 262 Query: 282 VN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG---IKNS 336 + + H +R AT + G ++ + YTK D RL Sbjct: 263 LPESATPHALRHSFATHLLARRGELRAIQELLGHASLSTTQIYTK-VDAARLMSAFEDAH 321 Query: 337 RRISSVVDSDDP 348 R + S+ P Sbjct: 322 PRARRLPPSEPP 333 >gi|29350025|ref|NP_813528.1| integrase [Bacteroides thetaiotaomicron VPI-5482] gi|29341937|gb|AAO79722.1| integrase [Bacteroides thetaiotaomicron VPI-5482] Length = 420 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 96/302 (31%), Gaps = 18/302 (5%) Query: 46 AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-- 103 Y SA+ + + E + + S + + + +++ + + Sbjct: 106 EYDSAILYTDKENEIAAQNERSEQDFIKYFNR-IISTRHPNSSDSIIVNWRRVGELLKMY 164 Query: 104 --------RKSGDFDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMRVLFKWAVRQEY 152 + I +R+ + K + ++A + + ++ K A EY Sbjct: 165 SQGQPIPFKAISVKLLEDIKMFLLRAPMGGNKKGTISQNTASTYFSILKAGLKQAFIDEY 224 Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212 + ++ V+ + T ++Q + + AF F + +GLR SD Sbjct: 225 LTVDISAKVKGITNIEKPRVALTMNEVQMLVDTPCKDDVLKRAFLFSILTGLRHSDIQTL 284 Query: 213 GVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS 270 + +Q + + L + I + + +A+ S Sbjct: 285 KWKQIQQTSKGTWQAVVIQQKTKRPDYKPVIQQALQLCGIRPDDDEALVFEGLTDASWIS 344 Query: 271 IWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 K +G+ K + H R A++ + G + + + G V + YT + Sbjct: 345 RPLKVWIEASGIKKHITFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHIVNE 404 Query: 329 IR 330 + Sbjct: 405 QK 406 >gi|78046247|ref|YP_362422.1| site-specific tyrosine recombinase XerC [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325925416|ref|ZP_08186815.1| tyrosine recombinase XerC subunit [Xanthomonas perforans 91-118] gi|325928769|ref|ZP_08189938.1| tyrosine recombinase XerC subunit [Xanthomonas perforans 91-118] gi|78034677|emb|CAJ22322.1| Site-specific recombinase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325540850|gb|EGD12423.1| tyrosine recombinase XerC subunit [Xanthomonas perforans 91-118] gi|325544176|gb|EGD15560.1| tyrosine recombinase XerC subunit [Xanthomonas perforans 91-118] Length = 305 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 40/286 (13%), Positives = 91/286 (31%), Gaps = 29/286 (10%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQI-------IRKSGDFDYR------KITTKHIR 120 + E+ ++ ++ ++ + ++G D ++ + H+R Sbjct: 4 VDEFLTYLQVERQVSAHTLDAYRRDLAALVVWAAEQATEAGVQDAAVPGETAQLDSAHLR 63 Query: 121 SGVESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 V + SA + L++ R + W ++ ++ +P ++ PK + + + Sbjct: 64 QFVAAEHRRGLSAKSLQRRLSACRSYYAWLLKHGRISASPAAALRAPKAPRKLPQVLDAD 123 Query: 178 DMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTII 233 + + G + R E SGLR S+ C + L + + K Sbjct: 124 EAVRLVEVPTDAPLGLRDRALLEVFYSSGLRLSELCALRWRDLDLDSGLVMVLGKGSKQR 183 Query: 234 TVELPDGFMKLLAMTPIG-----KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 V + + L F ++ I K A + G+ + Sbjct: 184 LVPVGSHAIAALREWRRDSGASADSHVFPGRAGGAISQRAVQIRIKQLAVRQGMFKDVHP 243 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R A+ ++ + G + + YT D L Sbjct: 244 HMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTH-LDFQHLA 288 >gi|261337550|ref|ZP_05965434.1| tyrosine recombinase [Bifidobacterium gallicum DSM 20093] gi|270277960|gb|EFA23814.1| tyrosine recombinase [Bifidobacterium gallicum DSM 20093] Length = 329 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 40/304 (13%), Positives = 88/304 (28%), Gaps = 48/304 (15%) Query: 71 LKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYR---KITTKHIRSGVESR 126 ++ EY + L+ N+ ++ + ++TT +R + Sbjct: 11 FAPMVEEYARYLRANMGLSENTVRAYAKDAVRCCTALHAMGISGFEQVTTDALRDWMAQE 70 Query: 127 KH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK- 183 + +S + ++R F W A +P ++ PK ++ Q Sbjct: 71 AQITSRTSLARRTVAVRRFFGWMAEHGKTATDPAAALHIPKAAHYLPDVLNEQQAQTLME 130 Query: 184 -----------------------------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214 + + E L +G+R ++ + Sbjct: 131 QVDDEAGARGAVAQPQADGEQHDGKAQTPQQHALAQRDCAMVELLYATGIRVAELTGLNM 190 Query: 215 QHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETF----------FINNDKQK 263 + + +I+ V + L F+ + + Sbjct: 191 ADVHADNRTIRVTGKGNKQRVVPYGIPAQRALDAWMEHGRAVLAAVSSGDALFLGSRGGR 250 Query: 264 MNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 ++ +A +AGV S H +R +AT D GA E+ G ++ + Y Sbjct: 251 IDQRIVREVVHREAQRAGVPDISPHALRHSAATHLLDGGADLREVQEMLGHSSLRTTQRY 310 Query: 323 TKGA 326 T + Sbjct: 311 THVS 314 >gi|255505939|ref|ZP_05349026.3| integrase/recombinase, phage integrase family [Bryantella formatexigens DSM 14469] gi|255264981|gb|EET58186.1| integrase/recombinase, phage integrase family [Bryantella formatexigens DSM 14469] Length = 332 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 36/263 (13%), Positives = 84/263 (31%), Gaps = 14/263 (5%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK----H 128 + + + + + + S ++++R + RKI+T+ IR + + Sbjct: 56 EYLQLFLDAKKIEGCSARTIQYYSSTVERMLRNI-EQPIRKISTEEIRKYLVDYQKINNC 114 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + + ++ F W ++Y+ +P + + K K + E ++ E Sbjct: 115 SKVTVDNIRRNISSFFSWLEEEDYILKSPMKRIHKIKTKQPVKETISDEAIEL-LRDSCE 173 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLAM 247 S+ + L +G+R + + + I K V L Sbjct: 174 CSRDLAMIDLLYSTGIRVGELVNLNISDVDFEARECIVFGKGDKERKVYFDAKAKLHLQN 233 Query: 248 TPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300 + + ++ + I ++ K + K H R+ AT + D Sbjct: 234 YLKTRADDNPALFVSLDEPHDRLKISGVEIRIRSLGRKLNMEKIHPHKFRRTMATRAIDK 293 Query: 301 GATAHELMATYGWKTVDQAETYT 323 G ++ G +D Y Sbjct: 294 GMPIEQVQKILGHSQIDTTMQYA 316 >gi|188995443|ref|YP_001929695.1| putative site-specific recombinase [Porphyromonas gingivalis ATCC 33277] gi|188595123|dbj|BAG34098.1| putative site-specific recombinase [Porphyromonas gingivalis ATCC 33277] Length = 401 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 41/291 (14%), Positives = 95/291 (32%), Gaps = 29/291 (9%) Query: 75 ISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRKH 128 I + + + + + ++ + F+ + R+ + S Sbjct: 8 IERFLYYLRYEVHASERTVCDYAQDLNRYAAFFSEHTGEVFEPSERDKDVARAWLFSLME 67 Query: 129 TP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 SS + L++++ +K+ V+ + +P + PK++ ++M++ + Sbjct: 68 AGQKSSSVQRRLSALKSFYKYMVKIGLIGQSPVRMLRGPKKERPLPVFVPNDEMEKVLNK 127 Query: 186 W-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------- 232 E + RL E L GLR S+ +++ I+ Sbjct: 128 PIREDDFEAVRDRLILETLYEVGLRRSEIATLKDNAVEDKAGCIRIIGKRNKERIVPFGK 187 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK----SAHG 288 ++ D + + + FF++ D + + + A V S H Sbjct: 188 RLQDMIDNYRNIREEKVGKSDFFFVSLDGRPLTGEVVYKIVRTAL--ANVPHLTKRSPHV 245 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRR 338 +R AT + GA + G ++ YT +++R R Sbjct: 246 LRHSFATEMLNHGADLMSVKELLGHDSLSTTVQYTHISFEQLRQMYNAHPR 296 >gi|253571485|ref|ZP_04848891.1| integrase [Bacteroides sp. 1_1_6] gi|251838693|gb|EES66778.1| integrase [Bacteroides sp. 1_1_6] Length = 420 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 96/302 (31%), Gaps = 18/302 (5%) Query: 46 AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-- 103 Y SA+ + + E + + S + + + +++ + + Sbjct: 106 EYDSAILYTDKENEIAAQNERSEQDFIKYFNR-IISTRHPNSSDSIIVNWRRVGELLKMY 164 Query: 104 --------RKSGDFDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMRVLFKWAVRQEY 152 + I +R+ + K + ++A + + ++ K A EY Sbjct: 165 SQGQPIPFKAISVKLLEDIKMFLLRAPMGGNKKGTISQNTASTYFSILKAGLKQAFIDEY 224 Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212 + ++ V+ + T ++Q + + AF F + +GLR SD Sbjct: 225 LTVDISAKVKGITNIEKPRVALTMNEVQMLVDTPCKDDVLKRAFLFSILTGLRHSDIQTL 284 Query: 213 GVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS 270 + +Q + + L + I + + +A+ S Sbjct: 285 KWKQIQQTSKGTWQAVVIQQKTKRPDYKPVTQQALQLCGIRPDDDEALVFEGLTDASWIS 344 Query: 271 IWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 K +G+ K + H R A++ + G + + + G V + YT + Sbjct: 345 RPLKVWIEASGIKKHITFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHIVNE 404 Query: 329 IR 330 + Sbjct: 405 QK 406 >gi|323146135|gb|ADX32374.1| phage integrase [Cronobacter phage ESSI-2] Length = 338 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 45/335 (13%), Positives = 91/335 (27%), Gaps = 40/335 (11%) Query: 14 ERTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + G+ + R G+RIR AY + + ++ + L Sbjct: 4 RKLDSGEWLCDLRPNGVKGKRIR-KKFVTKGEALAYEKFINAELEDKPWLGEKQDNRR-L 61 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES------ 125 LI+ + +L+ ++R S I GD IT E Sbjct: 62 SDLINLWYDLYG-RTLSDSNR--MMSKLKAICAGMGDPIASNITAADFSEYREGRLKGEI 118 Query: 126 -------RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 P + ++ +F + + + L+ + E + + Sbjct: 119 PDITGRCMPIQPQTVNHEQRNLSAVFGTLKKLGHWQLPNPLAGIPTFKVDEKMVSFLYPA 178 Query: 179 MQQFKSFWSEGSQ---PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 + + S L + L +G R S++ + + + K + +V Sbjct: 179 EIKTLLEYLNESNSSSVLLVAKICLATGARWSEAENLEGAQVTPYRITYRNTKNKKVRSV 238 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK----SAHGVRK 291 + + + T F+ KAG++ H +R Sbjct: 239 PISEKLYNEIPKKRGRLFTPC-------------RKTFERVIQKAGIDLPEGQCTHVLRH 285 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 A+ G L G + Y A Sbjct: 286 TFASHFMMNGGNILVLKDILGHSDIKMTMIYAHFA 320 >gi|296162695|ref|ZP_06845481.1| integrase family protein [Burkholderia sp. Ch1-1] gi|295887083|gb|EFG66915.1| integrase family protein [Burkholderia sp. Ch1-1] Length = 339 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 42/294 (14%), Positives = 91/294 (30%), Gaps = 30/294 (10%) Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR---KITTKHI 119 +P + L + Y + S ++ +R + ++T + Sbjct: 24 TPEHVESALMVFVKGYLDWLAVTGRTEQTVRSRFVALERFVRWCAERSLSRPQELTRSVL 83 Query: 120 RSGV---------ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170 + + + T + LT +R +W R+ +V N + P+ Sbjct: 84 EAYQRYLYLYRKQDGKPLTIRTQQTMLTPLRGWCRWLSRERHVQYNAAAELVLPRAPKLL 143 Query: 171 IRPWTKEDMQQFKSFWSE-----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225 + + + G++ R E L +G+R + V + + ++ Sbjct: 144 PKVVLSVVQVERLMDQPDVGGLTGARDRAILEVLYSTGMRRMELIGLTVSDIDLSGGTVM 203 Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGK------------ETFFINNDKQKMNATQFSIWF 273 ++ +P G + T F+ + + + S Sbjct: 204 IRQGKGRRDRYIPLGERACYWVEWYCDQIRPSLAVRADEWTLFLTDYGEPFGKGRLSDLV 263 Query: 274 KAKATKAGVNKSA-HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 K AG+ + A H +R AT + GA + A G + + YT+ A Sbjct: 264 KRYMEMAGIREGACHVLRHACATHMLENGADIRFIQALLGHADLSSTQIYTQVA 317 >gi|325292872|ref|YP_004278736.1| integrase family protein [Agrobacterium sp. H13-3] gi|325060725|gb|ADY64416.1| integrase family protein [Agrobacterium sp. H13-3] Length = 346 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 67/343 (19%), Positives = 119/343 (34%), Gaps = 24/343 (6%) Query: 12 TKERTRHGKIIYY-FRKGHGRRIR--LPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 K+ GK IYY + G ++ P + + +R P Sbjct: 12 VKKTLTSGKTIYYCYAWRGGPLLKNDKGEPIQPGDHLIKSAFRRAHDERRA------PSP 65 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI----TTKHIRSGVE 124 T L LI+ YR S+ + + +R ++ Y D+I + ++ T + + Sbjct: 66 TDLSSLITLYRGSSDFRRTKLGTRHEYDRYLDKIRMQFDRLSLEELQQPSTRGAFKEWRD 125 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 S TP +A + + +A + +++N R R T R W+ D+ F++ Sbjct: 126 SLADTPRTADFAWMVLVRVLSFAKDRGMISVNIAERGGRLYRSTRRDRTWSDADVAAFEA 185 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 SQ RLA + L++G R D R + + Sbjct: 186 V--APSQMRLAIQLALWTGQRKGDLLRLSWCDFDGANLRFIQ-SKTKARVLVPMGYLADV 242 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGAT 303 L + + F+ ++ KAG+ + + H +R + T A AG T Sbjct: 243 LCSQKGTGAILRTSRGS-AWTSAGFNTSWRKCCAKAGITDLTFHDLRGTAITRMALAGCT 301 Query: 304 AHELMATYGWK--TVDQA--ETYTKGADRIRLGIKNSRRISSV 342 E+ A G V+ Y G R L R++ +V Sbjct: 302 VPEIAAVTGHSLKDVEAILDMHYLGG--RTELAASAMRKMVAV 342 >gi|253563451|ref|ZP_04840908.1| integrase [Bacteroides sp. 3_2_5] gi|251947227|gb|EES87509.1| integrase [Bacteroides sp. 3_2_5] Length = 420 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 96/302 (31%), Gaps = 18/302 (5%) Query: 46 AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-- 103 Y SA+ + + E + + S + + + +++ + + Sbjct: 106 EYDSAILYTDKENEIAAQNERSEQDFIKYFNR-IISTRHPNSSDSIIVNWRRVGELLKMY 164 Query: 104 --------RKSGDFDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMRVLFKWAVRQEY 152 + I +R+ + K + ++A + + ++ K A EY Sbjct: 165 SQGQPIPFKAISVKLLEDIKMFLLRAPMGGNKKGTISQNTASTYFSILKAGLKQAFIDEY 224 Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212 + ++ V+ + T ++Q + + AF F + +GLR SD Sbjct: 225 LTVDISAKVKGITNIEKPRVALTMNEVQMLVGTPCKDDVLKRAFLFSILTGLRHSDIQTL 284 Query: 213 GVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS 270 + +Q + + L + I + + +A+ S Sbjct: 285 KWKQIQQTSKGTWQAVVIQQKTKRPDYKPVIQQALQLCGIRPDDDEALVFEGLTDASWIS 344 Query: 271 IWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 K +G+ K + H R A++ + G + + + G V + YT + Sbjct: 345 RPLKVWIEASGIKKHITFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHIVNE 404 Query: 329 IR 330 + Sbjct: 405 QK 406 >gi|294669162|ref|ZP_06734243.1| tyrosine recombinase XerC [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291308906|gb|EFE50149.1| tyrosine recombinase XerC [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 303 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 42/283 (14%), Positives = 88/283 (31%), Gaps = 19/283 (6%) Query: 68 PTTLKWL---ISEYRKSAHWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSG 122 P T L + Y + ++ ++ Q+ + + Sbjct: 5 PMTPDELPHHLDPYLAELQRQGKSEHTLTAYRRDLTQLFNLLPAHGQSVGRNDFVAVLKK 64 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + + + S + L++ R + +RQ+ + +P + ++ PK + E + + Sbjct: 65 LSQQNQSERSLARKLSAWRQYCAFLMRQKLLDADPTVRLKAPKAPERLPKAVDAEPLNRL 124 Query: 183 KSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVEL 237 + FE L SGLR ++ + + + K G V L Sbjct: 125 LDHAPAENGLDVRDLAIFELLYGSGLRVAEVHGLNTDDILLDEGWVEVRGKGGKHRQVPL 184 Query: 238 PDGFMKLLAMTPIGKETF------FINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGV 289 + L + F + +++ Q + A K G + S H + Sbjct: 185 GSRSVSALRAYLPQRIAQSGETALFTGHTGKRLGIRQIQNRLRDWAVKNGSPQHLSPHMM 244 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 R A+ + + G + + YTK D RL Sbjct: 245 RHSYASHLLQSSGDIRAIQELLGHSNLSATQIYTK-LDFDRLA 286 >gi|257869303|ref|ZP_05648956.1| phage integrase [Enterococcus gallinarum EG2] gi|257803467|gb|EEV32289.1| phage integrase [Enterococcus gallinarum EG2] Length = 324 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 32/320 (10%), Positives = 87/320 (27%), Gaps = 47/320 (14%) Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRK 127 ++ + ++ L N++ ++ + I + G + I ++ + Sbjct: 1 MSVANYFDYWFENYVEKKLKYNTQKNYLNIINKYIKPEIGKYYLSSIGPSRLQDLMNKLP 60 Query: 128 HT------PSSAIQFLTSMRVLFK---WAVR----QEYVAINPCLSVERPKRKTEGIRPW 174 + S LT ++ FK + + V + +PK+ + ++ Sbjct: 61 NGFDRPLAKHSVEIVLTVLKGAFKRAVYPWQAINSNPMVYVEMPAFENKPKQTRDDMKII 120 Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--- 231 T + Q+ F S RL ++GLR + C + + +I + Sbjct: 121 TMDQYQKILEFNPPSSPFRLPLMIGFHTGLRRGEVCGLQWSDISLDERTITVDRIMLQDK 180 Query: 232 ---------------------------IITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264 + ++ + + Sbjct: 181 HGIQLGTPKTQASFRTIAIDDVLAAELRRARKSQSENKLRYGKFYYDSTFVCTKDNGEPV 240 Query: 265 NATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ-AETYT 323 + G++ + H +R AT+ + G + G + + Y Sbjct: 241 TPNSIKWHSSRIKKELGIDFNFHSLRHTHATMLLEDGVKPKIVQERLGHSRIATKMDKYV 300 Query: 324 KGADRIRLGIKNSRRISSVV 343 ++ + + + Sbjct: 301 HVT--RKMKTEAVDIFAQRL 318 >gi|91786958|ref|YP_547910.1| phage integrase [Polaromonas sp. JS666] gi|91696183|gb|ABE43012.1| phage integrase [Polaromonas sp. JS666] Length = 358 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 39/297 (13%), Positives = 82/297 (27%), Gaps = 39/297 (13%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKHTP 130 L+ Y + LA + + ++ + ++ + H+R V Sbjct: 25 LVERYLEHVRVEKRLASRTVELYALDLHKLEANARQAGVALTEVHSTHMRRWVAQMHGAG 84 Query: 131 SS---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE-------DMQ 180 S L+ R + W R+ V NP V PK + + + Sbjct: 85 RSGRGIALILSGWRGFYAWLGREGLVPANPVQDVRSPKVAKPLPKALSVDEAVQLASYQS 144 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCR--------AGVQHLQNNIFSIKTQKTGTI 232 + ++ + E L GLR + A + + K Sbjct: 145 DDEDDPHLEARDQCITELLYGCGLRIGELVGLDVRASAQARGWVDMDAAEAHVLGKGSKR 204 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQ---------------KMNATQFSIWFKAKA 277 +V + ++ L + + ++ + K ++ Sbjct: 205 RSVPVGRQALQALHAWLALRGDWAGEGAAAEGAAGQALFISQRGARLTPQHIRLRLKRRS 264 Query: 278 TKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 KAG+ H +R A+ + + G + + YT+ D L Sbjct: 265 LKAGLATPVHPHMLRHSFASHVLQSSGDLRAVQELLGHANITTTQVYTR-LDFQHLA 320 >gi|330503525|ref|YP_004380394.1| phage integrase family protein [Pseudomonas mendocina NK-01] gi|328917811|gb|AEB58642.1| phage integrase family protein [Pseudomonas mendocina NK-01] Length = 329 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 84/313 (26%), Gaps = 18/313 (5%) Query: 19 GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78 G+ GRR R + + + + P+ + L L + Y Sbjct: 9 GRWKVDVEPIKGRRFRKTFKTKGEAQRFEATCRANCIDSPAWTPKPKDRRR-LSELCTRY 67 Query: 79 RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQ 135 + H +LA + + + GD K+T + Sbjct: 68 HE-LHGHALADG--AAILRTLQNLAKDLGDPIAVKLTGNAFCETRSELLKAGIQGKTMNN 124 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR-- 193 L ++ LF R + L RP R E + + Sbjct: 125 RLGYLKALFNELHRLGDIDYPNPLVNVRPLRLQERPISFLSTCQIAELLDALDDRTTSPG 184 Query: 194 --LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251 L L +G R ++ + ++N + + K+ ++ + K L + Sbjct: 185 IGLIARVCLSTGARWGEAQALTPERVRNGMVTFANTKSKRTRSIPIDRELEKALQIYFKR 244 Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATY 311 F FS + K ++ H +R A+ G L Sbjct: 245 HGLFTNCML-------TFSRVLDKTSIKLPAGQATHVLRHTFASHFVMRGGNILTLQKIL 297 Query: 312 GWKTVDQAETYTK 324 G ++ Y Sbjct: 298 GHTSLAMTMRYAH 310 >gi|327393403|dbj|BAK10825.1| site-specific recombinase, phage integrase family hypothetical protein [Pantoea ananatis AJ13355] Length = 337 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 55/336 (16%), Positives = 102/336 (30%), Gaps = 39/336 (11%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHES--TFIPAYMSALTGSTPKREYINSP 64 +PP V + GK Y F +G +RL AY + + + + Y + Sbjct: 13 MPPRVYR-----GKSAYEFHPKNGGAMRLCDLGSPQSKVWAAYEALINETPDIKNYKS-- 65 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 L + KS + LA ++ + Y +++ GD I +HIR ++ Sbjct: 66 ---------LAERFFKSPDFYELAAETQKDYRKYSLKVLSVFGDMPSDSIKPEHIRKYMD 116 Query: 125 SRKHTPSS-AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 R + A + M +F+W + V NP V+ + E R D + Sbjct: 117 KRGLRSRTQANREKAFMSRVFRWGYERGLVKQNPTKGVK---QFKEKARDRYVTDAEYSS 173 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 + ++A E R +D + + IK KT Sbjct: 174 LYSVAPDMVKIAMELAYLCCARQADILELKKSQIIDEGILIKQSKTSVSQIKGWSPRLQD 233 Query: 244 LLAM-------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAG-------VNKSAHGV 289 ++A + + K F+ + A + + H + Sbjct: 234 VIAQASTLPLKSGMSSIFVIHQPSGAKYTRDGFNSRWLKAKQDAKAAFPELDFDFTFHDL 293 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 + + + G K V Q Y + Sbjct: 294 KAKGISDL---DGNIYTKQEISGHKDVKQTARYNRK 326 >gi|34540214|ref|NP_904693.1| phage integrase family site specific recombinase [Porphyromonas gingivalis W83] gi|34396526|gb|AAQ65592.1| site-specific recombinase, phage integrase family/ribosomal subunit interface protein [Porphyromonas gingivalis W83] Length = 400 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 41/291 (14%), Positives = 94/291 (32%), Gaps = 29/291 (9%) Query: 75 ISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRKH 128 I + + + + + ++ + F+ + R+ + S Sbjct: 8 IERFLYYLRYEVHASERTVCDYAQDLNRYAAFFSEHTGEVFEPSERDKDVARAWLFSLME 67 Query: 129 TP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 SS + L++++ +K+ V+ + +P + PK++ +M++ + Sbjct: 68 AGQKSSSVQRRLSALKSFYKYMVKIGLIGQSPVRMLRGPKKERPLPVFVPNNEMEKVLNK 127 Query: 186 W-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------- 232 E + RL E L GLR S+ +++ I+ Sbjct: 128 PIREDDFEAVRDRLILETLYEVGLRRSEIATLKDSAVEDKAGCIRIIGKRNKERIVPFGK 187 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK----SAHG 288 ++ D + + + FF++ D + + + A V S H Sbjct: 188 RLQDMIDNYRNIREEKVGKSDFFFVSLDGRPLTGEVVYKIVRTAL--ANVPHLTKRSPHV 245 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRR 338 +R AT + GA + G ++ YT +++R R Sbjct: 246 LRHSFATEMLNHGADLISVKELLGHDSLSTTVQYTHISFEQLRQMYNAHPR 296 >gi|15595925|ref|NP_249419.1| bacteriophage integrase [Pseudomonas aeruginosa PAO1] gi|9946613|gb|AAG04117.1|AE004508_2 probable bacteriophage integrase [Pseudomonas aeruginosa PAO1] Length = 327 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 39/317 (12%), Positives = 94/317 (29%), Gaps = 18/317 (5%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 + G+ G+R R + + +A + P+ + L L Sbjct: 5 KLPDGRWFVDVEPIKGKRFRKRFKTKMEAQQFEATARQKCAENPCWTLRPKDRRR-LSEL 63 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPS 131 + + + H +L+ R + + + GD + + RS + + Sbjct: 64 VELWYE-LHGQTLSNGHRCV--AILRLVAKDLGDPVAVSLEPAKVARLRSRQIANGMSGK 120 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWS 187 +A L ++ ++ + + + RP + E + + + Sbjct: 121 TANNRLGYLKSMYNELRQLGVIDYENPVGRMRPLKLQERPLSYLTKHQVSELLTALDART 180 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247 P++ L +G R ++ + L+ N K+ + +V + + L Sbjct: 181 TSPHPKMVARICLATGARWGEAQALTPERLKGNTVIFANTKSKRVRSVPISEELGADLRR 240 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307 F F + + + K +++H +R A+ G L Sbjct: 241 HWQTHGPFTNCLGV-------FRLVLLSTSIKLPKGQASHVLRHTFASHFIMNGGHIVTL 293 Query: 308 MATYGWKTVDQAETYTK 324 G ++ Y Sbjct: 294 QHILGHASLSMTMRYAH 310 >gi|260567497|ref|ZP_05837967.1| tyrosine recombinase xerD [Brucella suis bv. 4 str. 40] gi|261755736|ref|ZP_05999445.1| tyrosine recombinase xerD [Brucella suis bv. 3 str. 686] gi|34222805|sp|Q7ZAN6|XERD_BRUSU RecName: Full=Tyrosine recombinase xerD gi|260157015|gb|EEW92095.1| tyrosine recombinase xerD [Brucella suis bv. 4 str. 40] gi|261745489|gb|EEY33415.1| tyrosine recombinase xerD [Brucella suis bv. 3 str. 686] Length = 309 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 84/289 (29%), Gaps = 33/289 (11%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR---K 127 I + + A N+ S+ + + + + T HIR +++ Sbjct: 8 AIENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKGVNLAEAETGHIRMTLDTMAAQG 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185 P+S + L+++R F++ + + +P ++ PK++ + + E++ + Sbjct: 68 FAPTSQARRLSALRQFFRFLYSEGFRQDDPTGILDAPKKQKPLPKIMSVENVGRLLDRAA 127 Query: 186 -----------WSEGSQPRLAFEFLLYSGLRCSDSC-------RAGVQHLQNNIFSIKTQ 227 + + E L +GLR S+ R + L K + Sbjct: 128 LEANEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKGSKDR 187 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---- 283 L + G + + F + Sbjct: 188 MVPLSRKARDALQKFLTLRDSLPGSDDNPWLFPAFSESGHLARQVFARELKGLAARAGLA 247 Query: 284 ---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 S H +R A+ GA + G + + YT + Sbjct: 248 ASSVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEER 296 >gi|198276324|ref|ZP_03208855.1| hypothetical protein BACPLE_02519 [Bacteroides plebeius DSM 17135] gi|198270766|gb|EDY95036.1| hypothetical protein BACPLE_02519 [Bacteroides plebeius DSM 17135] Length = 376 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 50/356 (14%), Positives = 104/356 (29%), Gaps = 29/356 (8%) Query: 11 VTKERTRHGKIIY-----YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65 + + R+GK Y Y G R A S E Sbjct: 28 LYLDIYRNGKRTYEYLKLYLIPGTDSNTRRQNEITMAAANAIKSKRIIELTSGEAGIVNH 87 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGV 123 L + Y + I I+++ ++ + + Sbjct: 88 TDKVYLLDWMQTYLEYQEKRDKKG---IGQIKAVTHILKEYAGERFILDRVDLAFCQGYI 144 Query: 124 ESRKHT---------PSSAIQFLTSMRVLFKWAVRQEYVAINP---CLSVERPKRKTEGI 171 + T S+ + AVR + + NP E+PK Sbjct: 145 DYMLTTFRPKGKPIAASTRNTYYQIFNGALNAAVRAKRLLRNPFNEMEKSEKPKMPESVR 204 Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTG 230 T E+++ + + + + A+ F + GLR SD +++ + + Sbjct: 205 SYMTIEEVRALIATPMQEGRVKNAYLFSCFCGLRISDIVGLKWKNVFVDNGQYRLAVAMQ 264 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288 + L P ++ + + + + + A AG+ K + H Sbjct: 265 KTKEPIYLPLSNEALKWMPEREDKAADDPVFNL--PSNINQYLRPWAEAAGITKRFTFHT 322 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 R AT+ GA + + G +V + Y K ++ + + ++ + D Sbjct: 323 ARHTFATMMLTLGADLYTVSKLLGHTSVRMTQVYAKIINQKK--DEAVNLVNGLFD 376 >gi|169830947|ref|YP_001716929.1| phage integrase family protein [Candidatus Desulforudis audaxviator MP104C] gi|169637791|gb|ACA59297.1| phage integrase family protein [Candidatus Desulforudis audaxviator MP104C] Length = 286 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 43/279 (15%), Positives = 88/279 (31%), Gaps = 16/279 (5%) Query: 75 ISEYRKSAHWGSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KH 128 +++++ LA + + + + G+ D +T+ + Sbjct: 6 LNDFQNHLLGRGLAPATAGVYLGHVRRFLAWVEGTHGEADVAAVTSLDVADYRRHLLKDR 65 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 P++ L ++ F WA V +P V R + + R T+ ++ + Sbjct: 66 KPATVNNALDALSSFFAWAKDAGLVQADPTDGVRRAQEERGAPRWLTRREVGALVRAVQK 125 Query: 189 GS--QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFM 242 + + LL++GLR S++ Q ++ K V L Sbjct: 126 HGSKRDQALVTLLLHTGLRVSEAVGLKTQDAVIRERSGHVIVRRGKGEKYREVPLNVTAR 185 Query: 243 KLLAMT---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISAD 299 K L G F + + F AGV + H +R + D Sbjct: 186 KALQDWLAAHPGGPWLFPGRGEAPLTRWAAEKMFAKLGRLAGVEVTPHKLRHTFCKMLVD 245 Query: 300 AGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSR 337 AG + + G ++ YT+ G + ++ Sbjct: 246 AGESLDRVAVLAGHANLNTTARYTRPGVQDLERAVEKLA 284 >gi|157502100|ref|YP_001485199.1| integrase/recombinase [Bacillus thuringiensis] gi|87133405|gb|ABD24315.1| integrase/recombinase [Bacillus thuringiensis] Length = 314 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 33/306 (10%), Positives = 89/306 (29%), Gaps = 40/306 (13%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRKH 128 + Y N+ +E+ + I+ D + IT ++ + Sbjct: 6 FMENYIIWLKEQGKRENTIKQYETTLKEFIQWYEDTNGVVFQGESITPMDLQEWKQFLME 65 Query: 129 ----------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + S+ + ++ FK+ N V++PK + + W Sbjct: 66 VAKTNSGKQLSVSTVSTKIGRVKPYFKFLYETNRTQTNLGAMVKQPKIQNKNDAKWLDRI 125 Query: 179 MQQFKSFW-----------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227 + + + + +L +GLR S+ + + +++ S++ Sbjct: 126 SKNRLMRYLEDVELIKKNPWKNYRNLAIVNIMLQAGLRVSEVSKLKLDDIEDGFISVRDG 185 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ-----------KMNATQFSIWFKAK 276 K G + + + + ++ + Q ++ FK Sbjct: 186 KGGKARKIPMNSDVVNSINKWKEHRQIHQAFKENQTEYLFVSQKNGPLSVVGIENIFKTI 245 Query: 277 ATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 G+ + H +R G + G ++ + Y + + + Sbjct: 246 RKHTGLEELTPHVLRHTFGHDLVQKGIPISYVAELMGHTDINTTKIYVTAGQQEK--QEA 303 Query: 336 SRRISS 341 +++S Sbjct: 304 VEKLAS 309 >gi|89898086|ref|YP_515196.1| site-specific tyrosine recombinase XerD [Chlamydophila felis Fe/C-56] gi|89331458|dbj|BAE81051.1| integrase/recombinase [Chlamydophila felis Fe/C-56] Length = 298 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 36/264 (13%), Positives = 81/264 (30%), Gaps = 23/264 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLTSMR 141 L+ NS ++ ++ S +I+ + + R+ + S+ + L +++ Sbjct: 22 RGLSRNSISAYSQDITLFLKISAITSIEEISQDSVYLFVQQLHKRQESESTLARRLIALK 81 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE-------DMQQFKSFWSEGSQPRL 194 V F++ E + P + E PK T + + ++ ++ Sbjct: 82 VFFRFLKETELLDHPPLI--EHPKIWKRLPSVLTPKEVDALLAIPKTSETSPMISARDSA 139 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM---KLLAMTPIG 251 L +G+R S+ C + + ++ + + + T + L Sbjct: 140 ILHTLYSTGIRVSELCGLCIGDVSDDFLRVTGKGSKTRLVPLGERACKTIDAYLCPFRET 199 Query: 252 KETFFINNDKQKMNATQ-------FSIWFKAKATKAGVNK-SAHGVRKFSATISADAGAT 303 + ++ A + + S H +R AT D A Sbjct: 200 FQKQRPEEHHLFLSVRGHKLERSCVWRRIHHYAKQITHKQVSPHSLRHAFATHLLDNKAD 259 Query: 304 AHELMATYGWKTVDQAETYTKGAD 327 + G + E YT A Sbjct: 260 LRVIQEMLGHARIASTEIYTHVAS 283 >gi|307704159|ref|ZP_07641083.1| phage integrase family protein [Streptococcus mitis SK597] gi|307622265|gb|EFO01278.1| phage integrase family protein [Streptococcus mitis SK597] Length = 384 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 56/366 (15%), Positives = 108/366 (29%), Gaps = 55/366 (15%) Query: 11 VTKERTRHGKIIYYF-------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63 + K +T+ G I+YY G +R Y + L Sbjct: 3 IHKYKTKKG-ILYYVSFYIGLDAYGKKKRHLKRGFKTKKEAKLYEARLEAGVVAPTVSTD 61 Query: 64 PRKKPTTLKWLISEYRKSAH---WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 T K L E+ + + + ++ + I+ GD +I+ + Sbjct: 62 KPNPKVTYKELYQEWFNAYVGTVEETTSSQTKNIYRI---HILPIFGDKFIDQISPLDCQ 118 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-IRPWTKEDM 179 + + + T + Q + +F +A+ Y+ NP +V PK K W+ E++ Sbjct: 119 NFITQKSQTFKNIKQIKSYTSKIFDFAINMNYIDRNPMKNVIMPKIKKTRSDNFWSLEEL 178 Query: 180 QQFKSFWSEGSQPRLAFEFLL--YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----- 232 F E + F L +SGLR + + + + K+ Sbjct: 179 HHFLDIVKETEPFKHFALFRLLAFSGLRKGELYALKWADINFDSNLLNIDKSLGRIDGKA 238 Query: 233 -----------ITVELPDGFMKLLAMTP--------------------IGKETFFINNDK 261 T+ L D + ++ N+ Sbjct: 239 IEKSTKNESSVRTIYLDDETIDIIKQWRNFYLKEQSQFPLTKLNISNEYMFYYISSNDKI 298 Query: 262 QKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA- 319 + ++A + K + S HG R AT+ ++ G G + Sbjct: 299 EPLHADYINNVLNRIIKKHKLKPISPHGFRHTHATLMSEIGIDPSNTSKRLGHASSQMTL 358 Query: 320 ETYTKG 325 + YT Sbjct: 359 DVYTHT 364 >gi|196040606|ref|ZP_03107905.1| site-specific recombinase, phage integrase family [Bacillus cereus NVH0597-99] gi|196028396|gb|EDX67004.1| site-specific recombinase, phage integrase family [Bacillus cereus NVH0597-99] Length = 370 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 51/370 (13%), Positives = 110/370 (29%), Gaps = 42/370 (11%) Query: 12 TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT- 70 K+ + GK Y G + A T +++ + Sbjct: 5 VKKDKKTGKYFYIVDIGIDPLTGKRKQKKKRGFITKKEAENALTKLLSEVHAGTYVEPSK 64 Query: 71 --LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK 127 + + + S+ + + + Y +II G+ K+T+ H+++ V S + Sbjct: 65 LLYGEYLESWFNTKK-HSVGIQTAKVLKGYLKSRIIPTLGNIKLAKLTSLHMQNYVNSLR 123 Query: 128 H---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + + + +R + A+ E + N + PK E + W + ++Q F Sbjct: 124 DDGLKRGTIEKIIKIIRNSLEHAIDLELITKNVAAKTKLPKGDKEELIVWNEHEVQSFLK 183 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------------ 232 S+ + F L +G+R + + + + +T + Sbjct: 184 AAQ-DSRYSIVFHMALVTGMRQGELLGLRWKDVDLEKGHLTISQTLSHDGKTFLLGGKTK 242 Query: 233 ---ITVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKA 275 + LP + L + +N A Sbjct: 243 SSLRKILLPASTVAKLKKHRAVVLKEKLSQGEEYQDNDLVMCTPSGTPINPANVRRSLNA 302 Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGI 333 KA V K H +R AT+ G + G + +TY+ + Sbjct: 303 LIKKAAVPKIRFHDLRHTHATLLLAKGVNVKVISERLGHSNIKITLDTYSHVLPT--MQE 360 Query: 334 KNSRRISSVV 343 ++I ++ Sbjct: 361 DVVKKIEEML 370 >gi|303246068|ref|ZP_07332349.1| integrase family protein [Desulfovibrio fructosovorans JJ] gi|302492464|gb|EFL52335.1| integrase family protein [Desulfovibrio fructosovorans JJ] Length = 373 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 45/313 (14%), Positives = 107/313 (34%), Gaps = 18/313 (5%) Query: 34 RLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRI 93 +P P +T + ++ + + + TL L Y Sbjct: 51 TIPDPETATASVQVVKTVSTTDAPTGEVLGQKPVGITLLELGHRYLDHMRASGRTDKHIR 110 Query: 94 SFESYF-DQIIRKSGDFDYRKITTK--HIRSGVESRKHTPSS--------AIQFLTSMRV 142 + E +Q + GD +T + ++ + + + ++ ++ + Sbjct: 111 NIERLLENQFVPVIGDKPVDSLTYQGDMVQFILHFKGVSGTTKKTRSQYTVNKYCDYLSF 170 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202 +F + + +NP + ++PK + ++ T +D ++ + + + F L + Sbjct: 171 IFNFGIDNGLTKVNPLKNWKKPKVQPWDLK-LTLDDAKKIMACAEPHLRWAMEVCFNLGT 229 Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--ITVELPDGFMKLLAMTPIGKETFFINND 260 S+ +++ +++ T T TV + F+K L ++ ++ Sbjct: 230 RPGESELLSLRWENIDFTAGTVRIYATKTKTYRTVPINPSFLKRLEEEKASSQSEYVIEY 289 Query: 261 KQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVD- 317 + T FK +AG+ + +R AT GA + G TV Sbjct: 290 MGRK-LTTIRKAFKHACQRAGITYPTRMYDLRHLFATTLLSRGADLAAVSKMMGHSTVKL 348 Query: 318 QAETYTKGADRIR 330 A+TY + + Sbjct: 349 TADTYYHYMEGEK 361 >gi|302874927|ref|YP_003843560.1| integrase family protein [Clostridium cellulovorans 743B] gi|307690455|ref|ZP_07632901.1| integrase family protein [Clostridium cellulovorans 743B] gi|302577784|gb|ADL51796.1| integrase family protein [Clostridium cellulovorans 743B] Length = 276 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 41/263 (15%), Positives = 86/263 (32%), Gaps = 14/263 (5%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HTPS 131 + ++ ++N+ S++ Q + +IT + I E + Sbjct: 4 LDKWIIKMREEDKSINTIESYKGDVIQFMNFIEKEP-EEITKEDILKYKEYLALNEMSVK 62 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ--FKSFWSEG 189 SA + S+ F + + + + ++ + + KED + + Sbjct: 63 SANRKYISVNSFFSFLQTELEKDVQMRIKKDKIQNQEYLEEMLAKEDFENLVQVASSYND 122 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249 + F L Y+G+R S++ + + N++ IK + + V +P +L Sbjct: 123 YRAVAIFNTLFYTGMRISEALQLKTTDISNDVVVIKGKGS-KHRNVFIPQKLKSILNTYM 181 Query: 250 IGKETFF----INNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGA 302 I + K +N K A AG+ AH R + G Sbjct: 182 IYRLPCKSDALFTGKKGPINRKTVDAIIKKYAAIAGISMTKAHAHNFRHLYCLTLIEKGL 241 Query: 303 TAHELMATYGWKTVDQAETYTKG 325 T + G ++ YT+ Sbjct: 242 TIDTVADLAGHSNINTTRIYTRK 264 >gi|29566149|ref|NP_817718.1| gp41 [Mycobacterium phage Che9c] gi|29424874|gb|AAN12601.1| gp41 [Mycobacterium phage Che9c] Length = 400 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 52/377 (13%), Positives = 108/377 (28%), Gaps = 59/377 (15%) Query: 1 MTPSLRLPPFVTK---ERTRHGKIIYYFR------KGHGRRIRLPYPHESTFIPAYMSAL 51 M LPP + + E G+ + + G+R RL + + AL Sbjct: 1 MAERRHLPPQIKRVELEARSGGRPVVRYELIVDVGVVDGKRKRLRRRYPTE--KEARDAL 58 Query: 52 TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY 111 + T++ ++ + A ++ +E +I + G+ + Sbjct: 59 AQIRGQVAQGTYVHPTQRTVREACDDWLAGKRAANRAESTVDGYEEKLTVVIEQLGEIEI 118 Query: 112 RKITTKHIRSGVESRK--------------HTPSSAIQFLTSMRVLFKWAVRQEYVAINP 157 +K+T +H+ V + + +P S L + + + +Q + N Sbjct: 119 QKLTKRHLDDLVTALREGGLPSPNGKPRKPWSPRSVNYLLGLLVSILESEQKQGHTVRNV 178 Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217 V+R + P T E + G + +A+E L G R ++ + Sbjct: 179 AALVDRIEANPTPPDPLT-ESEVETLLAHIAGDRYAIAWELALA-GFRLAEISGLRWCDV 236 Query: 218 QNNIFSIKTQKTGTIITVELPDGFMK------------------------------LLAM 247 + ++ Q T + + K L Sbjct: 237 DLDARTVTVQNTRLQRGKKRIEKTPKSRASRRELPLPDDLFAAFKAARKIQAADQLRLGE 296 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHE 306 +N + + AG+ + H R T+ G Sbjct: 297 AYEASGYVVVNEAGTPLTPNAIENRWARVLKAAGLRHVRLHDARHTCGTLMHLRGVPTAL 356 Query: 307 LMATYGWKTVD-QAETY 322 + A G + +TY Sbjct: 357 ISAWLGHASKAFTLQTY 373 >gi|307307476|ref|ZP_07587210.1| integrase family protein [Shewanella baltica BA175] gi|306910151|gb|EFN40585.1| integrase family protein [Shewanella baltica BA175] Length = 451 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 50/313 (15%), Positives = 112/313 (35%), Gaps = 15/313 (4%) Query: 27 KGHGRRIRLPYPHESTFIPAYMSALTGSTP--KREYINSPRKKPTTLKWLISEYRKSAHW 84 + R R+ P + + A TG + E+ + + + K + Sbjct: 49 IDNRTRTRILAPVSALTVKAAREKATGQLQAWREEHTQPSMSASSRFDVFVEQTWKPMIF 108 Query: 85 GSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTP-SSAIQFLTSMRV 142 +++ S +++ G + I + +++ + T +A + L +++ Sbjct: 109 EHWKPSTKRSVLPALNRRLLAHFGRYPLHMINHRMVQAWFDEISKTRKGAANRNLDTLQS 168 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-----FKSFWSEGSQPRLAFE 197 +FK A+RQ + NPC+ + + ++ R + +MQ+ + GS + A Sbjct: 169 VFKLALRQGHCLTNPCIGIRQ-NKRRVLNRFLSVAEMQRLSVALDECETVGGSIAQCADI 227 Query: 198 FLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255 L +G R S+ ++++ N + KTG + + K Sbjct: 228 LRLLLLTGCRLSEITFLKGEYVRGNELHLPDSKTGAKVLYIGQAAVD--ILSRYHCKANT 285 Query: 256 FINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWK 314 + KQ + + + + G+ + H +R A+ + G + + + G K Sbjct: 286 ELFPMKQGASTSLVQSLWLRLRKQIGIEDVRLHDLRHTFASYAVMDGCSIPMVASLLGHK 345 Query: 315 TVDQAETYTKGAD 327 V YT D Sbjct: 346 KVTMTLRYTHVGD 358 >gi|299068373|emb|CBJ39597.1| site-specific tyrosine recombinase [Ralstonia solanacearum CMR15] Length = 329 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 47/298 (15%), Positives = 86/298 (28%), Gaps = 41/298 (13%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGVESRKH- 128 I+ Y + + L+ ++ S+ + R + D ++ HIR + Sbjct: 20 IAAYLDALKFERKLSEHTLASYARELAVLQQLGARFAAGIDPMQLQPHHIRRMMAQLHGG 79 Query: 129 --TPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + S + L++ R +KW R V NP + PK + + E Sbjct: 80 GLSGRSIARALSAWRGWYKWLALRDAAVTANPVDGIHAPKSPKRLPKALSVEQAVALMEH 139 Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 E + R E GLR S+ ++H + ++ + V + Sbjct: 140 LPGDDPEAVRDRAVNELFYSCGLRLSELVGLDLRHAKAGDYASASWLDLEAREVTVLGKG 199 Query: 242 MKLLAMTPIGKETFFINNDKQ-------------------------KMNATQFSIWFKAK 276 K + K + ++ Q K Sbjct: 200 NKRRTLPVGSKAAEALAAWLAVRAQLAPPDAAPEDAHALFLSARGKRLTQRQIQTRMKRN 259 Query: 277 ATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 A AGV H +R AT + + G ++ + YT D L Sbjct: 260 AIAAGVPADVHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYT-SLDFQHLA 316 >gi|296163709|ref|ZP_06846425.1| integrase family protein [Burkholderia sp. Ch1-1] gi|295886049|gb|EFG65951.1| integrase family protein [Burkholderia sp. Ch1-1] Length = 321 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 37/279 (13%), Positives = 85/279 (30%), Gaps = 30/279 (10%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR---KITTKHIRSGV---------ES 125 Y + S ++ +R + ++T + + + Sbjct: 7 YLDWLAVTGRTEQTVRSRLVALERFVRWCAERSLSRPQELTRSVLEAYQRYLYLYRKQDG 66 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + T + LT +R +W R+ +V N + P+ + + Sbjct: 67 KPLTIRTQQTMLTPLRGWCRWLSRERHVQYNAAAELVLPRAPKLLPKVVLSVVQVERLMD 126 Query: 186 WSE-----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 + G++ R E L +G+R + + + + ++ ++ +P G Sbjct: 127 QPDVGGLTGARDRAILEVLYSTGMRRMELIGLTISDIDLSGGTVMIRQGKGRRDRYIPLG 186 Query: 241 FMKLLAMTPIGKETFFIN------------NDKQKMNATQFSIWFKAKATKAGVNKSA-H 287 + + + + + S K +AG+ + A H Sbjct: 187 ERACYWVEWYCDRIRPSHAVRADEWTLFLTDYGEPFGKGRLSDLVKRYMERAGIREGACH 246 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 +R AT + GA + A G + + YT+ A Sbjct: 247 VLRHACATHMLENGADIRFIQALLGHADLSSTQIYTQVA 285 >gi|56461653|ref|YP_156934.1| site-specific recombinase XerC [Idiomarina loihiensis L2TR] gi|56180663|gb|AAV83385.1| Site-specific recombinase XerC [Idiomarina loihiensis L2TR] Length = 300 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 35/284 (12%), Positives = 81/284 (28%), Gaps = 23/284 (8%) Query: 71 LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI------RSGV 123 L ++ + LA + +++ + + + G Sbjct: 3 LHDWQQKWMQQLQGERGLAELTLKNYQRLIAADLTALELQKITEPKALRVPVIERLLVGW 62 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW---TKEDMQ 180 S L++ R ++ V + NP +SV PK + + + Sbjct: 63 RRNGLGERSIALKLSAWRTFCQFMVESNAMDDNPAMSVSAPKIPKRLPKNLDVDSISHLL 122 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPD 239 + + E L SG+R ++ + H+ + + ++ V Sbjct: 123 DLPTDDDLAIRDAAMMELLYASGIRLAELVSLDLDHIDHRMMQLRVTGKGSKTRIVPFGR 182 Query: 240 GFMKLLAMTPIGKETFFINNDK---------QKMNATQFSIWFKAKATKAGV--NKSAHG 288 K L ++ + + Q+++ + GV + H Sbjct: 183 CAEKALKKWLSVRQAWLNQKPELALFVSKRLQRISPRTVQQRLNYWGKQQGVVGDLHPHK 242 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 +R A+ ++ + G + + YT D RL Sbjct: 243 LRHSFASHMLESSGDLRAVQEMLGHANLSTTQVYTH-LDFKRLA 285 >gi|326943857|gb|AEA19747.1| integrase/recombinase [Bacillus thuringiensis serovar chinensis CT-43] Length = 314 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 33/306 (10%), Positives = 89/306 (29%), Gaps = 40/306 (13%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRKH 128 + Y N+ +E+ + I+ D + IT ++ + Sbjct: 6 FMENYIVWLKEQGKRENTIKQYETTLKEFIQWYEDTNGVVFQGESITPMDLQEWKQFLME 65 Query: 129 ----------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + S+ + ++ FK+ N V++PK + + W Sbjct: 66 VAKTNSGKQLSVSTVSTKIGRVKPYFKFLYETNRTQTNLGAMVKQPKIQNKNDAKWLDRI 125 Query: 179 MQQFKSFW-----------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227 + + + + +L +GLR S+ + + +++ S++ Sbjct: 126 SKNRLMRYLEDVELIKKNPWKNYRNLAIVNIMLQAGLRVSEVSKLKLDDIEDGFISVRDG 185 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ-----------KMNATQFSIWFKAK 276 K G + + + + ++ + Q ++ FK Sbjct: 186 KGGKARKIPMNSDVVNSINKWKEHRQIHQAFKENQTEYLFVSQKNGPLSVVGIENIFKTI 245 Query: 277 ATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 G+ + H +R G + G ++ + Y + + + Sbjct: 246 RKHTGLEELTPHVLRHTFGHDLVQKGIPISYVAELMGHTDINTTKIYVTAGQQEK--QEA 303 Query: 336 SRRISS 341 +++S Sbjct: 304 VEKLAS 309 >gi|254994614|ref|ZP_05276804.1| integrase/recombinase [Anaplasma marginale str. Mississippi] Length = 267 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 38/240 (15%), Positives = 86/240 (35%), Gaps = 29/240 (12%) Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 SR ++P++ + ++++R L+ + + +P +++ K + T +++ + Sbjct: 17 NSRGYSPATVARRISAIRGLYGFLYGDRIIDGDPAANLDSCKLGRPLPKVLTVDEVDKLL 76 Query: 184 SF-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-------- 230 EG + L SG+R S+ G +++ + ++ Sbjct: 77 CAAGSDLSVEGRRTAAIVNILYSSGVRISELINLGFYDIESMLKEQRSDVGHLVIKGKAG 136 Query: 231 ------------TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278 I L ++ + F Q ++ + KA A Sbjct: 137 RERLILLNEVAIASIVAYLAVRDHFIVGQKSESRWLFPGAKFDQCISRQRVGQLLKALAI 196 Query: 279 KAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIK 334 AGV+ S H +R AT + G+ + G ++ + YT A DR++ ++ Sbjct: 197 VAGVDPKRISPHKLRHSFATHLLNNGSNVVFIQKMLGHASLSTTQIYTYVANDRLKEALQ 256 >gi|304440443|ref|ZP_07400332.1| phage integrase [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371195|gb|EFM24812.1| phage integrase [Peptoniphilus duerdenii ATCC BAA-1640] Length = 387 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 49/346 (14%), Positives = 106/346 (30%), Gaps = 43/346 (12%) Query: 24 YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83 +RK + +F+ A + E ++ ++ Y K+ Sbjct: 23 RYRKTKTIKCSFTGLKLKSFMNAKELDVIQEL-YAEIGSASYAANLSIFNFGQWYIKNHK 81 Query: 84 WGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK----------HTPSS 132 L N+ + SY QI GD + IT + ++ + P + Sbjct: 82 ---LEENTISWYNSYLKNQINSFFGDKPIKNITERDVKDFNNHLMNYISERTKKPYAPKT 138 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 +T ++ LF AV + + NP +V+ K + + + ++ Sbjct: 139 IKHNITVLKSLFNVAVEEGILEKNPAENVKNVKVQKSVQDKYYSPSEMKKALKYAFKEDD 198 Query: 193 RLAFEFLLYS---GLRCSDSCRAGVQHLQN----------------NIFSIKTQKTGTII 233 ++ + GLR ++ ++ + K K Sbjct: 199 VNFILCIVLTVTYGLRPAELRGLKWTKIEWTSKRVMIDDTITVVNYYGYDEKGTKNNEPR 258 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNA--------TQFSIWFKAKATKAGVNK- 284 L +LL + ++ F + +++ F +K K G+ Sbjct: 259 VGILTPMIEELLKLQIKEQKKLFGKKCEFVVHSTTGDHLANKTFRDNWKKFCKKIGLRYL 318 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 +G+R +AT+ A + + G K + E Y + + Sbjct: 319 PPYGLRHTTATLLASQNVSIPNIADVMGHKNLSTTEIYIHAIEEEK 364 >gi|265984520|ref|ZP_06097255.1| integrase/recombinase [Brucella sp. 83/13] gi|306839293|ref|ZP_07472110.1| integrase/recombinase protein [Brucella sp. NF 2653] gi|264663112|gb|EEZ33373.1| integrase/recombinase [Brucella sp. 83/13] gi|306405840|gb|EFM62102.1| integrase/recombinase protein [Brucella sp. NF 2653] Length = 333 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 57/287 (19%), Positives = 119/287 (41%), Gaps = 14/287 (4%) Query: 6 RLP-PFVTKERTRHGKIIYYFRKGHGRRIRL-------PYPHESTFIPAYMSALTGSTPK 57 R+P + +++ RHG +Y R + R+ F Y L G + Sbjct: 14 RVPFKYCSRDIDRHGNERFYLRLPGMPKYRMTSAYLDEAGSITQAFTEEYHRVLAGGRGE 73 Query: 58 REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117 + + R +P +++WL+ Y +S + S + ++ +S ++ G+ ++KI Sbjct: 74 KA-VPISRLEPGSVRWLVETYYRSKAFQSQSPATQKDKKSVLNRYCLNVGELPFKKIRKS 132 Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 I + R TP +A + + ++ LF WA+ E P V + + G W++ Sbjct: 133 DIEASQMKRSGTPGAADKLVKYLKALFNWAISAELATFTPANGVTKIHQSP-GFHTWSEA 191 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ----KTGTII 233 ++ ++++ + GS RLA E +L G+R SD + G ++L + + K + Sbjct: 192 ELARYRAAYPLGSMARLAMELMLNLGVRRSDLVKLGWRNLVGDRIEFMPEKGSGKYAQSL 251 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280 ++ + D + L + TF I + + F + + Sbjct: 252 SLPVTDELREALDAITHDQPTFLITEYGKAFSGNGFGNKMRQWVQRC 298 >gi|29377419|ref|NP_816573.1| phage integrase family site specific recombinase [Enterococcus faecalis V583] gi|29344886|gb|AAO82643.1| site-specific recombinase, phage integrase family [Enterococcus faecalis V583] Length = 381 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 49/380 (12%), Positives = 107/380 (28%), Gaps = 49/380 (12%) Query: 11 VTKERTRHGKIIYYF------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64 + K + G Y F G+ + T A ++ E Sbjct: 4 INKYTKKDGTTAYMFNAYVGRHPKTGKNVYRKRQGFKTKKQAQIALAEILKDIEENGLDN 63 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGV 123 + T K L ++ + +S + + I+ GD +IT + V Sbjct: 64 KPSVLTFKQLYEKWLAQQRLT-IKPSSIAVNKRFAEKHILPYLGDCKLDEITVIQCQDLV 122 Query: 124 ESRKHTPSSAIQFLTSMRV-LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + F + + ++ E + NP PK K E + + Sbjct: 123 NKWFNQGHKQYSFYRKLTAQIMRYGESMELMNTNPMRKTILPKWKEEETKLEYYTKQELN 182 Query: 183 KSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHL-----------------QNNI 221 F + F L ++G R S+ + L NI Sbjct: 183 HFFDCLKQYGNFKQLAFFRLLAFTGCRKSEVLALQWKDLDITNKSVYIGKTVAQDEFYNI 242 Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN---------------DKQKMNA 266 + + + ++ L + ++++A + + + + ++ Sbjct: 243 LTQTPKTASSTRSISLDNETLQIMAKWRTIQRSDYFQMGFNTSSEEQYIFTNNHNKLLSP 302 Query: 267 TQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 +IW K + + H R A++ +G E+ G + Y+ Sbjct: 303 NVVNIWLNCLIKKYDLPSITPHHFRHTHASLLLQSGVPIKEVAERLGHTSTAITDRIYSH 362 Query: 325 GADRIRLGIKNSRRISSVVD 344 + K + + + V Sbjct: 363 VMPEEK--EKTADKFAQFVG 380 >gi|297182869|gb|ADI19020.1| site-specific recombinase xerd [uncultured alpha proteobacterium HF0070_05I22] Length = 314 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 46/292 (15%), Positives = 87/292 (29%), Gaps = 30/292 (10%) Query: 62 NSPRKKPTTLKW-LISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKI 114 T+ LI + + +++ N+ ++ + D Sbjct: 2 ARQADPAQTVADPLIMMFLDALVAMRAVSANTLAAYRRDLADTSQLLHASKTTLTDCNAD 61 Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 + + S R + S + L+++R WAV + NPC ++ P + Sbjct: 62 DLRQVISLWHQRGLSARSVARRLSALRQFMGWAVDDQIRTDNPCRWIDNPSLPALLPKSL 121 Query: 175 TKEDMQ------QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQ 227 +++++ + + E L +GLR S+ V + SI Sbjct: 122 SEDEVMKLLAAANAMQPPALSCRAVAMLEILYATGLRVSELVHLQVSQFRRQPDSILVAG 181 Query: 228 KTGTIITVELPDGFMKLLAMT-------------PIGKETFFINNDKQKMNATQFSIWFK 274 K G V L + A M +F+ K Sbjct: 182 KGGRERLVPLGLAAKRAAADWLELRDATFGYLLSDYMFPGVSSTAAGGAMTRHEFAQLLK 241 Query: 275 AKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 A A ++ + H +R AT + GA L G + + YT Sbjct: 242 TIAVAAQIDPRRVTPHKIRHSFATHMLNRGADLRSLQNMLGHADIATTQIYT 293 >gi|295396788|ref|ZP_06806923.1| tyrosine recombinase XerD [Brevibacterium mcbrellneri ATCC 49030] gi|294970372|gb|EFG46312.1| tyrosine recombinase XerD [Brevibacterium mcbrellneri ATCC 49030] Length = 312 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 39/279 (13%), Positives = 87/279 (31%), Gaps = 25/279 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHI---RSGVESRK 127 +SEY + N+ ++ + + D D +T++H+ + + Sbjct: 22 VSEYLTYLQLERGSSRNTVDAYARDLAKYVTYLADTGVNDLGSVTSEHVAGFIEHIAHQN 81 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185 +S + ++R L + + +P V+ P + + + + + Sbjct: 82 FAVTSRARITVAVRRLHHFTAGETG-GTSPADDVQPPTDTMRLPKALSVDQVSRIIHAAG 140 Query: 186 -----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPD 239 + EFL +G R S++ + + + V L Sbjct: 141 DPQSADPAQLRAVALIEFLYATGARISEAVGVDRDDVDVDAGIARVYGKGNKERLVPLGS 200 Query: 240 GFMKLLAMTPIGKETFFI--------NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVR 290 ++ L + N +++ K A A V + +AH +R Sbjct: 201 HAIEALGAWLTRGRPAWAASSPAVFLNARGGRLSRQSAWAIVKKAAEIADVPRVTAHSLR 260 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + GA + G +V + YT+ + Sbjct: 261 HSCATHLVEGGADIRIVQELLGHSSVTTTQIYTQVTSQA 299 >gi|312193924|ref|YP_004013985.1| integrase family protein [Frankia sp. EuI1c] gi|311225260|gb|ADP78115.1| integrase family protein [Frankia sp. EuI1c] Length = 397 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 54/352 (15%), Positives = 104/352 (29%), Gaps = 40/352 (11%) Query: 27 KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG- 85 G+R R + T A + KP T+ +S + Sbjct: 45 WIDGKRRR-RTVYGRTQKEARGK-MNALREAAGKGQDLAAKPQTVAEWLSYWLDEIKGHD 102 Query: 86 SLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK--HTPSSAIQFLTSMRV 142 ++ + D I+ G K++ +R +R+ P+S + +RV Sbjct: 103 GTRPSTLSRYRYAIDGHIVPVLGKIRLDKLSPADVRRLHAARRDSMKPASLAKIHAVLRV 162 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202 A R + V+ N SV+ PK R ED ++F G + F L Sbjct: 163 ALADAERMDLVSRNVAKSVQPPKLGDSDPRDLAVEDARRFLEVA-AGDRLEALFVVALTM 221 Query: 203 GLRCSDSCRAGVQHLQNNIFSIK----------------TQKTGTIITVELPDGFMKLLA 246 GLR + + + +++ T+ G+ V +P ++ L Sbjct: 222 GLRRGELLGLRWDDVDLDAATLRVVRSAQRVSGTLRLVDTKTRGSRRPVPIPAMTLEALK 281 Query: 247 MTPIGKETFFINNDKQK--------------MNATQFSIWFKAKATKAGVN-KSAHGVRK 291 ++ + K + + + + + H R Sbjct: 282 RHRKRQDQERADAGKAWKENGLVFASTVGTLIEPRNVTRRVQQLRGRVNLPTLRLHDFRH 341 Query: 292 FSATISADAGATAHELMATYGWKTVDQAE-TYTKGA-DRIRLGIKNSRRISS 341 A+ AG +M G T+ Y +R+R ++ Sbjct: 342 ACASFLLAAGIEPRTVMEILGHATMRMTMERYGHALPERLRAASDAMDKLMG 393 >gi|302381671|ref|YP_003817494.1| integrase [Brevundimonas subvibrioides ATCC 15264] gi|302192299|gb|ADK99870.1| integrase family protein [Brevundimonas subvibrioides ATCC 15264] Length = 314 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 44/296 (14%), Positives = 85/296 (28%), Gaps = 32/296 (10%) Query: 67 KPTTLKWLISEYRKSAHW-GSLAVNSRISF----ESYFDQIIRKSGDF----DYRKITTK 117 T ++ + + L+ + ++ Y + R G+ D +T Sbjct: 9 PDLTAAGALAAWLEHLAHERRLSPRTLEAYGHIGRQYLAFLERHRGEAQRLPDLGTVTAA 68 Query: 118 HIRSGVESRKHT-----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 +R+ + R+ S Q L+++R + R+ V P+ K R Sbjct: 69 ELRAHLAERRSGDHPLNARSLSQTLSAIRTFHVFLDRRCDTPAPQLALVRGPRVKATLPR 128 Query: 173 PWTKEDMQQFK--------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 P + + + E + L GLR S++ Sbjct: 129 PVSADQARGLLAEPGLDPDVEPWEALRDTAVLSLLYGCGLRISEALSLTRADAPLPETLR 188 Query: 225 KTQKTGTIITVELPDGFMKLL-------AMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277 T K G V + + + F ++A + Sbjct: 189 ITGKGGKTRLVPVLPVVRSAVDAALAAQPFPLSPPDALFRARRGGALSARHVQATVQRLR 248 Query: 278 TKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 + G+ + H +R AT AGA + G ++ + YT D L Sbjct: 249 GRLGLPASATPHALRHSFATHLLGAGADLRSIQELLGHASLSTTQKYT-AVDAAHL 303 >gi|227879131|ref|ZP_03997015.1| integrase-recombinase [Lactobacillus crispatus JV-V01] gi|227861288|gb|EEJ68923.1| integrase-recombinase [Lactobacillus crispatus JV-V01] Length = 302 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 40/276 (14%), Positives = 97/276 (35%), Gaps = 25/276 (9%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS-------GDFDYRKITTKHIRSGVESR 126 + ++ + + +++++ + R G R+ + + R Sbjct: 8 LDQFLSYLQNERHYSAKTVLAYQTDLHEAERFWHENGGFPGWTKVRERDIQVYLQHLAER 67 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-- 184 K SS ++ ++S+ +++ R++ VAI+P + + + + + + + +++Q Sbjct: 68 KLARSSQLRKMSSLHSFYRFLTRRKLVAIDPTKGITLRRGEKKLPQFFYQPELKQVFDSL 127 Query: 185 --FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGF 241 + FE +G+R S+ + L ++ +I K V D Sbjct: 128 KGNKPLTMRNLAMFELFYATGMRVSEVSNLTLNQLDLDLQTILVHGKGNKDRYVAFDDKT 187 Query: 242 MKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289 K L ++ F+NN + + + +AG+ H + Sbjct: 188 KKSLIAYLENARPLLLKNDDEQHVFLNNQGTGITSRGIETVMQKTFNQAGISGKVHPHEL 247 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 R AT + GA + G ++ + YT Sbjct: 248 RHSFATAMLNNGADLRSVQELLGHSSLSATQIYTHV 283 >gi|90421041|ref|ZP_01228944.1| tyrosine recombinase XerC [Aurantimonas manganoxydans SI85-9A1] gi|90334676|gb|EAS48453.1| tyrosine recombinase XerC [Aurantimonas manganoxydans SI85-9A1] Length = 319 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 42/277 (15%), Positives = 80/277 (28%), Gaps = 30/277 (10%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRSGVESRKHTPSSAIQF 136 + ++ ++E Q + D+ D + T +R + +R+ + A Sbjct: 28 RRSSPHTIEAYERDLRQFLIFLTDYHARPAQLGDLADLKTADLRGFLAARRRDGAGAKTM 87 Query: 137 ---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ-------QFKSFW 186 L +R + R+ + ++ PK+ RP T +D F + Sbjct: 88 GRGLAGVRSFIRHLERKGLASSAGAKAMRAPKQPKSLPRPLTVDDAMAVTEEAGAFAADA 147 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELPDGFMKL 244 ++ L GLR S++ L + K G V L ++ Sbjct: 148 WIAARDVAILTLLYGCGLRISEALSLPGDALGDATARSMPVAGKGGKTRLVPLLPAVLEA 207 Query: 245 LAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSAT 295 A F + G+ + H +R AT Sbjct: 208 AAEYRRRCPYPLTADNALFRGARGGPLQPQIVQRAMARLRGVLGLPDSATPHALRHSFAT 267 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 G + G ++ + YT D+ RL Sbjct: 268 HLLAGGGDLRTIQDLLGHASLSTTQNYT-AVDQARLM 303 >gi|193065311|ref|ZP_03046383.1| integrase [Escherichia coli E22] gi|213615968|ref|ZP_03371794.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|192927105|gb|EDV81727.1| integrase [Escherichia coli E22] Length = 312 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 45/304 (14%), Positives = 91/304 (29%), Gaps = 18/304 (5%) Query: 28 GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87 G+RIR + Y + E+ + + L LI + K Sbjct: 6 RKGKRIR-KKFKTKSDAVLYERWVLAQQHNNEWKGNSIDRRP-LSVLIDLWWKYHGQLMK 63 Query: 88 A-VNSRISFESYFDQIIRKSGDFDYRKITTKH---IRSGVESRKHTPSSAIQFLTSMRVL 143 + N+ ++ D K+ T +R + PS+ + + ++ + Sbjct: 64 SGHNT----RLKLLRLSEAMDDPCVHKLNTTMLTELRVSRIEQGIQPSTINREIGALSAM 119 Query: 144 FK-WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202 F ++ NP ++ K + +K + Q +E RLA E LL + Sbjct: 120 FTALISSGHFLNDNPVQGLKGMKVNEREMGYLSKSECVQLLDALAENPDERLAVEILLST 179 Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262 G R + + + + + K TV + + + + ++ Sbjct: 180 GARWGEVAALEQRRVLHCRITFSKTKNSKNRTVPISESLFEKIKKRGGKLVFPTLD---- 235 Query: 263 KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 + K A ++ H +R A+ G L G + Y Sbjct: 236 ---YSLVRDVIKTVAPDVPDGQAVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIY 292 Query: 323 TKGA 326 A Sbjct: 293 AHLA 296 >gi|194429499|ref|ZP_03062021.1| integrase [Escherichia coli B171] gi|194412463|gb|EDX28763.1| integrase [Escherichia coli B171] gi|195182858|dbj|BAG66428.1| predicted integrase [Escherichia coli O111:H-] Length = 312 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 45/304 (14%), Positives = 91/304 (29%), Gaps = 18/304 (5%) Query: 28 GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87 G+RIR + Y + E+ + + L LI + K Sbjct: 6 RKGKRIR-KKFKTKSDAVLYERWVLAQQHNNEWKGNSIDRRP-LSVLIDLWWKYHGQLMK 63 Query: 88 A-VNSRISFESYFDQIIRKSGDFDYRKITTKH---IRSGVESRKHTPSSAIQFLTSMRVL 143 + N+ ++ D K+ T +R + PS+ + + ++ + Sbjct: 64 SGHNT----RLKLLRLSEAMDDPCVHKLNTTMLTELRVSRIEQGIQPSTINREIGALSAM 119 Query: 144 FK-WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202 F ++ NP ++ K + +K + Q +E RLA E LL + Sbjct: 120 FTALISSGHFLNDNPVQGLKGMKVNEREMGYLSKSECVQLLDALAENPDERLAVEILLST 179 Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262 G R + + + + + K TV + + + + ++ Sbjct: 180 GARWGEVAALEQRRVLHCRITFSKTKNSKNRTVPISESLFEKIKKRGGKLVFPTLD---- 235 Query: 263 KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 + K A ++ H +R A+ G L G + Y Sbjct: 236 ---YSLVRDVIKTVAPDVPDGQAVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIY 292 Query: 323 TKGA 326 A Sbjct: 293 AHLA 296 >gi|254449766|ref|ZP_05063203.1| phage integrase [Octadecabacter antarcticus 238] gi|254450115|ref|ZP_05063552.1| phage integrase [Octadecabacter antarcticus 238] gi|254450532|ref|ZP_05063969.1| phage integrase [Octadecabacter antarcticus 238] gi|198264172|gb|EDY88442.1| phage integrase [Octadecabacter antarcticus 238] gi|198264521|gb|EDY88791.1| phage integrase [Octadecabacter antarcticus 238] gi|198264938|gb|EDY89208.1| phage integrase [Octadecabacter antarcticus 238] Length = 320 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 42/261 (16%), Positives = 84/261 (32%), Gaps = 25/261 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA---IQFLTSMR 141 +L S+ S + G T ++ + + S Q +T ++ Sbjct: 39 RNLGPASQSSHLRACKRFAAWLGRSP-ETATPDDVKYFQQHLIESGVSICTRNQTMTGVK 97 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201 L + +R+ + E K +K+++++ + + R+ Sbjct: 98 FLLRVTLRRHDLVAEIFHLKEPVKV----PLVLSKKEIKRIL-AMAPSLKARVMLSLAYG 152 Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKT--GTIITVELPDGFMKLLAMTPIGKETFFINN 259 G+R + R V + ++ I+ ++ V LP + LL + T + Sbjct: 153 CGMRAGEVVRLKVGDIDSDQEIIRIVQSKGRKDRIVMLPVDILSLLRDWWKERPTGQDKD 212 Query: 260 DKQKM------------NATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305 +A Q S FK A +AG+ + H +R AT + G Sbjct: 213 VPAPERVLFPGYRGKHLSARQISRLFKETAREAGITKPVTLHTLRHSFATHLLERGVDIR 272 Query: 306 ELMATYGWKTVDQAETYTKGA 326 + A G + Y A Sbjct: 273 VIQALLGHSKLTTTARYASVA 293 >gi|47566156|ref|ZP_00237184.1| phage integrase family domain protein [Bacillus cereus G9241] gi|47556709|gb|EAL15040.1| phage integrase family domain protein [Bacillus cereus G9241] Length = 308 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 32/281 (11%), Positives = 75/281 (26%), Gaps = 28/281 (9%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRS---GVE 124 LK+ + ++ + ++ + S+ Q + D IT ++ + Sbjct: 6 LKFAVLDFLDDREFKNVTPKTLQSYRDILKQFEDFCLEHDVINVEDITASIMKRYILHYQ 65 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE--------RPKRKTEGIRPWTK 176 + + ++ L +R + + E + NP ++ + Sbjct: 66 KKGNNATTTNSKLQRIRAFLNYMIECEVIKNNPAKKIQKAREDVRIDVFTDYHIKQMLNY 125 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 + + + LL +GLR S+ C + ++ Sbjct: 126 YRRIKQREKTFYAYRDYSIIVVLLGTGLRQSELCSLKWTDIDFKYQTLSVFGKSRKRESI 185 Query: 237 L-----------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-- 283 F + + E F N +++ FK A Sbjct: 186 PVADKVLMELATYKTFCEQTFVEKGLSEYVFTNRSNKQLTPNAVQNVFKRLAKIMNFKDV 245 Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 S+H R +G + + ++ E Y Sbjct: 246 RLSSHTFRHTFCQRCIQSGMSTFAVQRLMRHSSIVVTERYA 286 >gi|17981816|ref|NP_536807.1| integrase [Haemophilus phage HP2] gi|145639521|ref|ZP_01795125.1| putative integrase [Haemophilus influenzae PittII] gi|13752189|gb|AAK37784.1| integrase [Haemophilus phage HP2] gi|145271312|gb|EDK11225.1| putative integrase [Haemophilus influenzae PittII] gi|309750497|gb|ADO80481.1| integrase [Haemophilus influenzae R2866] Length = 337 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 42/330 (12%), Positives = 91/330 (27%), Gaps = 28/330 (8%) Query: 12 TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP-TT 70 ++ T++GK + +G+R+R + + + Y A +T + + Sbjct: 3 VRKDTKNGKWLAEV-YVNGKRLRKWFLTKGDALRFYNQAKEQTTSAVDSVQVLESSDLPA 61 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---- 126 L + + E+ H +L+ + + + GD + + + R Sbjct: 62 LSFYVQEWFD-LHGKTLSDG--EARLAKLKNLCANLGDPPANEFNAEIFADYRKRRLDGE 118 Query: 127 -------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 ++ + +R +F L R ++ E + E Sbjct: 119 FSVNKNNPPKEATVNREHAYLRAVFNELKSLRKWTAENPLDGVRLFKERETELAFLYERD 178 Query: 180 QQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 + S+ L L +G R S++ + + K+ TV Sbjct: 179 IYRLLAECDNSRNPDLGLIVRICLATGARWSEAETLTQSQVMPYKITFVNTKSKKNRTVP 238 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296 + +L F + + H +R A+ Sbjct: 239 ISKELFDMLPKKRGRLFNDA---------YESFENAVLRAEIELPKGQLTHVLRHTFASH 289 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326 G L G T++ Y A Sbjct: 290 FMMNGGNILVLKEILGHSTIEMTMRYAHFA 319 >gi|291522920|emb|CBK81213.1| Site-specific recombinase XerD [Coprococcus catus GD/7] Length = 280 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 38/274 (13%), Positives = 96/274 (35%), Gaps = 18/274 (6%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---H 128 + + ++ R +A+ +L ++ ++ + + + D +TT + + + +K Sbjct: 3 EEIFNQIRSAANKRNLKDSTIHAYCTSVAHFLNHTA-KDIDALTTDDVDTFLTEKKLSGI 61 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +P + + + +R +K ++ + + + TK ++ Sbjct: 62 SPETYNHYHSGIRFFYKKVLKMNWDDDDIPRMKRD----RKLPAVLTKAEISAILDAT-P 116 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLA 246 + + + GLR S+ + N I+ K+ + L D +++L Sbjct: 117 NLKHKAMIATMYSGGLRVSEVTHLHYDDISRTNKTIHIRDGKSRSDRYTLLADRTLEILT 176 Query: 247 MTPIGKETFFINNDKQKMNATQFS-----IWFKAKATKAGV--NKSAHGVRKFSATISAD 299 + +F+ A +AG+ + S H +R A+ + Sbjct: 177 EYWFQCGRPRGILFPSSWTGDYLTKDSVIQFFRESAERAGIQKHVSTHCLRHSFASHLFE 236 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 +G + A G + E Y +++ LGI Sbjct: 237 SGCDIKYIQALLGHRDPKSTEIYLHVSNKTLLGI 270 >gi|315611996|ref|ZP_07886914.1| phage integrase [Streptococcus sanguinis ATCC 49296] gi|315315985|gb|EFU64019.1| phage integrase [Streptococcus sanguinis ATCC 49296] Length = 381 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 53/367 (14%), Positives = 112/367 (30%), Gaps = 48/367 (13%) Query: 11 VTKERTRHGKIIYYFRK--------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62 + K T+ G+ Y F+ G +R A L + + N Sbjct: 2 IKKYITKKGETRYLFQTYLGIDPATGKEKRTTRRGFKTIKEAKAAERDLLLDVEENGFSN 61 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRS 121 + + T + + S ++ + + + + +I D ++I+ + + Sbjct: 62 NEDFQNPTFAEVAELWLDSYK-STVKPTTYQNVKKKLNVMIDSYFTDMKIQQISVAYCQK 120 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK--TEGIRPWTKEDM 179 + + + + +FK+A + + NP + +PK K +TK+++ Sbjct: 121 VAIKLSNRYILYANYYSVISRIFKYAASLDIIKSNPLDKIIKPKNKPLKGKENYYTKQEL 180 Query: 180 QQFKSFWSEG--SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-------------- 223 +F + F L +SGLR ++ + Sbjct: 181 TEFLKVYKANCKPVDYTFFHLLAFSGLRTGEAIGLMWSDVDFENKRLSISRTAVVIGKKQ 240 Query: 224 --IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF------SIWFKA 275 + + + L D + +L + + + + + W A Sbjct: 241 TVQDPKTKRSKRVITLDDETLNVLKFWKRQQIKEYFQAGVPYKHDSNYIFTNNSGGWLLA 300 Query: 276 KATKAGV-----------NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYT 323 K + S HG R A++ +AG TA + G V + YT Sbjct: 301 ATMKVKLSRFFCKHKDLKKISPHGFRHTHASLLFEAGVTAKIISDRLGHNNVQITLDMYT 360 Query: 324 KGADRIR 330 D R Sbjct: 361 HINDNQR 367 >gi|160896902|ref|YP_001562484.1| integrase family protein [Delftia acidovorans SPH-1] gi|160362486|gb|ABX34099.1| integrase family protein [Delftia acidovorans SPH-1] Length = 365 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 46/303 (15%), Positives = 86/303 (28%), Gaps = 42/303 (13%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQII--RKSGDFDYRKITTKHIRSGVESRK 127 L + Y + LA + + ++ + + + HIR V Sbjct: 28 LPAAVHAYLEHVRVQKRLADRTCALYALDMARLCTMARDAGQELLALQPAHIRRFVAQMH 87 Query: 128 HTPSS---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED------ 178 S L+ R F+WA +Q V NP V PK + +D Sbjct: 88 SRGRSPRGIALILSGWRSFFRWAAQQSLVPFNPVEGVRGPKAPKPLPKALGVDDAVQLAA 147 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--------- 229 ++ ++ E L GLR + V Q+ + Sbjct: 148 FSNAEADPWIEARDAAITELLYSCGLRVGELVGLDVAPGQDTQRQGRGWIDLQAADAHVQ 207 Query: 230 ---GTIITVELPDGFMKLLAMT---------------PIGKETFFINNDKQKMNATQFSI 271 G TV + ++ L + FI +++ A Sbjct: 208 GKGGKRRTVPVGAAALQALQRWLALRETGLAGAAALAAHHESALFIGRRGERLGAQSVWT 267 Query: 272 WFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + + +AG+ H +R A+ + + G ++ + YT+ D Sbjct: 268 RLRQRGQQAGLSAGVHPHVLRHSFASHMLQSSGDLRAVQELLGHASISTTQIYTR-LDFQ 326 Query: 330 RLG 332 L Sbjct: 327 HLA 329 >gi|15921682|ref|NP_377351.1| integrase/recombinase [Sulfolobus tokodaii str. 7] gi|15622469|dbj|BAB66460.1| 284aa long hypothetical integrase/recombinase [Sulfolobus tokodaii str. 7] Length = 284 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 43/270 (15%), Positives = 84/270 (31%), Gaps = 31/270 (11%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----------- 123 E+ + + N+ + + D R +TT + + + Sbjct: 15 FDEFITALMIAGASENTIRLYSIAISDFLSYI-RKDPRTVTTYDLNNWIRNILSRETKSK 73 Query: 124 -----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 E R+ +A ++ ++ KW P+ + + IR ++E+ Sbjct: 74 NENEIEKRRKKSVTARHYIIAVLRFLKWLGVDV--------KPTIPRIRRKEIRALSEEE 125 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVE 236 + + K + + RL + LL +GLR + + I + K G V Sbjct: 126 IVKIKENVKK-LKDRLLIQLLLDTGLRSKELLSIKKSDINIERRYIIVRNTKNGEERIVF 184 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296 + +LL E I + K K G++ H +R AT Sbjct: 185 FTEETARLLKSYLRNIEDNGILFNM---TYHALYRKLKRLGKKLGIDLRPHILRHTFATQ 241 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326 + G + G K + + YT Sbjct: 242 AIRKGMPLPVVQKLLGHKDIRTTQIYTHLV 271 >gi|149372373|ref|ZP_01891561.1| integrase [unidentified eubacterium SCB49] gi|149354763|gb|EDM43326.1| integrase [unidentified eubacterium SCB49] Length = 295 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 30/263 (11%), Positives = 82/263 (31%), Gaps = 23/263 (8%) Query: 85 GSLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSGVESR---KHTPSSAIQFL 137 + + ++ +++E + + + D + IRS + + S + + Sbjct: 14 RNYSKHTIVAYERDLETFFKFLKTTFSEEDPVNVNYSMIRSWIVCLVEQGISNRSINRKV 73 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-----FKSFWSEGSQP 192 +S++ +K+ ++ + + P + K + P+ + ++ + + ++ Sbjct: 74 SSLKTYYKFLLKTKQITATPLAKHKSLKVSKKIQVPFYETEIDEVITLLDHPTDFKTARD 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK----LLAM 247 +L +G+R ++ ++ + K + L +K L Sbjct: 134 KLIVALFYGTGMRRAELISLKLKDVDLAEGVVKVLGKRNKERLIPLLPSVLKSVDLYLKF 193 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKAT------KAGVNKSAHGVRKFSATISADAG 301 + V KS H +R AT + G Sbjct: 194 RKEIVVVDSDYLLLTNKGLKIYETLVYRLINGYFSTTSQKVKKSPHILRHSFATHLLNEG 253 Query: 302 ATAHELMATYGWKTVDQAETYTK 324 A + + G ++ + YT Sbjct: 254 ADLNSVKELLGHASLASTQVYTH 276 >gi|323187008|gb|EFZ72325.1| integrase [Escherichia coli RN587/1] Length = 312 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 45/304 (14%), Positives = 90/304 (29%), Gaps = 18/304 (5%) Query: 28 GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87 G+RIR + Y + E+ + + L LI + K Sbjct: 6 RKGKRIR-KKFKTKSDAVLYERWVLAQQHNNEWKGNSIDRRP-LSVLIDLWWKYHGQLMK 63 Query: 88 A-VNSRISFESYFDQIIRKSGDFDYRKITTKH---IRSGVESRKHTPSSAIQFLTSMRVL 143 + N+ ++ D K+ T +R + PS+ + + ++ + Sbjct: 64 SGHNT----RLKLLRLSEAMDDPCVHKLNTTMLTELRVSRIEQGIQPSTINREIGALSAM 119 Query: 144 FK-WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202 F ++ NP ++ K + +K + Q +E RLA E LL + Sbjct: 120 FTALISSGHFLNDNPVQGLKGMKVNEREMGYLSKSECVQLLDALAENPDERLAVEILLST 179 Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262 G R + + + + + K TV + + + + ++ Sbjct: 180 GARWGEVAALEQRRVLHCRITFSKTKNSKNRTVPISENLFEKIKKRGGKLVFPTLDYPL- 238 Query: 263 KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 K A ++ H +R A+ G L G + Y Sbjct: 239 ------VRDVIKTVAPDVPDGQAVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIY 292 Query: 323 TKGA 326 A Sbjct: 293 AHLA 296 >gi|87162325|ref|YP_494623.1| integrase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|161510228|ref|YP_001575887.1| bacteriophage integrase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|87128299|gb|ABD22813.1| integrase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|160369037|gb|ABX30008.1| bacteriophage integrase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|315196780|gb|EFU27125.1| bacteriophage integrase [Staphylococcus aureus subsp. aureus CGS01] Length = 345 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 45/329 (13%), Positives = 100/329 (30%), Gaps = 24/329 (7%) Query: 19 GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP--RKKPTTLKWLIS 76 GK Y K G+R R A + K + S TL+ Sbjct: 8 GKKWQYEFKYEGKRYRKKGFRTK------REANSAGLDKLNELRSGFNIDNYITLEEYFE 61 Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVES--RKHTPSSA 133 + K+ + N+ + + I + G + KI + + + ++H + Sbjct: 62 NWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDYSKEHAKETI 121 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVER----PKRKTEGIRPWTKEDMQQFKSFWSEG 189 + ++R A+ + NP V P + + E + Sbjct: 122 RKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEILKDHVRKKR 181 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-------KTGTIITVELPDGFM 242 ++ LA ++ +G R S + ++H+ +I I M Sbjct: 182 TRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTDTSPRYISIAKSDMKHIM 241 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAG 301 +++ I + + +N + K+ ++ ++H +R + G Sbjct: 242 DVISTFAISYDGYIFKEAGSIINLHAINNALKSACRVNNISIITSHALRHTHCSYLLAKG 301 Query: 302 ATAHELMATYGWKTVD-QAETYTKGADRI 329 + H + G K + Y+ + Sbjct: 302 VSIHYISKRLGHKNIAITTSVYSHLLEEK 330 >gi|296268973|ref|YP_003651605.1| integrase family protein [Thermobispora bispora DSM 43833] gi|296091760|gb|ADG87712.1| integrase family protein [Thermobispora bispora DSM 43833] Length = 292 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 40/289 (13%), Positives = 89/289 (30%), Gaps = 26/289 (8%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSG---VESR 126 Y + L+ ++ ++ + G ++ +R+ Sbjct: 3 AAFERYLRLE--RDLSPHTVRAYLGDVASLFAHLRATGRERIAELDITDLRAWLGEQHRA 60 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + ++ + + R + R+ ++A +P + K + T+E Q S Sbjct: 61 GLSRTTLARRIACARTFTAFCHRRGWLAHDPGPLLGTTKAERRLPAVLTQEQAQAALSPP 120 Query: 187 SEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 G + E L +G+R S+ C + + +I+ TV Sbjct: 121 VSGDPKELRDHAIMELLYATGIRVSELCALDLGDVDRERNTIRVMGKGRKERTVPFGQPA 180 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSI------WFKA--KATKAGVNK----SAHGV 289 + L + ++ + + A AGV HG+ Sbjct: 181 ARALDAWCVRGRPQWVRDGTPPALFLGVRGGRIDPGTVRRVVHARLAGVPGAPGMGPHGI 240 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337 R AT + GA + G ++ + YT + +R+R + + Sbjct: 241 RHTMATHLLEGGADLRSVQEILGHASLATTQLYTHVSIERLRAAYRQAH 289 >gi|289207303|ref|YP_003459369.1| tyrosine recombinase XerC [Thioalkalivibrio sp. K90mix] gi|288942934|gb|ADC70633.1| tyrosine recombinase XerC [Thioalkalivibrio sp. K90mix] Length = 316 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 37/270 (13%), Positives = 86/270 (31%), Gaps = 21/270 (7%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS---GVESRKHTP 130 I+ + + ++ +++ + R + ++ +R + + H P Sbjct: 22 IAAFLAHLRDVRGHSPHTIKAYQRDLAHLRR-LHSGPWDQLKAADMRRIAGQLARQGHHP 80 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-----F 185 S +FL++ R F V + NP + P+ R + QQ + Sbjct: 81 RSIQRFLSAARGFFAHQVEHRRMPANPAAGLRGPRAGRALPRDLDVDQTQQALTPAEDLD 140 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKL 244 ++ + E L SGLR S+ + L + ++ K +V + Sbjct: 141 PILAARDQAMLELLYSSGLRLSELTGLDLTDLDLDAGLVRVLGKGRRERSVPVGRMARDA 200 Query: 245 LAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSA 294 L + + + Q++ +AG++ H +R A Sbjct: 201 LRNWLKCRGDWAAPDAHAVFVSRRGQRIGNRAVQRRVAEAGRRAGLDVRLHPHRLRHAFA 260 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324 + ++ + G ++ + YT Sbjct: 261 SHLLESSGDLRAIQELLGHANLETTQIYTH 290 >gi|260063566|ref|YP_003196646.1| putative site-specific recombinase [Robiginitalea biformata HTCC2501] gi|88783010|gb|EAR14184.1| putative site-specific recombinase [Robiginitalea biformata HTCC2501] Length = 297 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 42/285 (14%), Positives = 97/285 (34%), Gaps = 28/285 (9%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRKH 128 ++Y A ++ ++ + D G+F IRS + Sbjct: 4 EAFAKYLTLE--KKYAAHTVKAYLADLDAFSEYCREEQGEFALADQPYPVIRSWIIHLME 61 Query: 129 TP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + S + + S++ +K+ +RQ + +P + + K P+++ +M+ Sbjct: 62 SGLNNRSVNRKVASLKSYYKYQLRQGRIDASPLAAHKPLKIPRRVEIPFSESEMEGLLGE 121 Query: 186 W-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KTGTIITVELPD 239 W E + +L E L +G+R ++ + + +++ K + L Sbjct: 122 WEPSEGYEAHRDKLVVELLYTTGMRRAELIGLKLGDVDLEQGTLRVTGKRDKERILPLLP 181 Query: 240 GFMKLL---------AMTPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHG 288 G ++ + + F+ + K+ A +S H Sbjct: 182 GIVREIRAYLELRGAHFKSGSEPHLFLTSRGNKLYENLVYRIINRYLSMVSAKSKRSPHI 241 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK--GADRIRL 331 +R AT + GA + + G ++ + YT A+ R+ Sbjct: 242 LRHTFATHLLNQGADMNSVKELLGHSSLASTQVYTHNSIAELKRI 286 >gi|227529436|ref|ZP_03959485.1| phage integrase/recombinase [Lactobacillus vaginalis ATCC 49540] gi|227350646|gb|EEJ40937.1| phage integrase/recombinase [Lactobacillus vaginalis ATCC 49540] Length = 322 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 37/264 (14%), Positives = 84/264 (31%), Gaps = 14/264 (5%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRK 127 + I++Y + + + ++ + G +KITT+ +R +SR Sbjct: 45 ESYIADYLAAKQVEGCSEKTINYYQVTLKMMFSYLG-KHVQKITTEDLRDYLGNYQQSRN 103 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + + F W ++ + +P + + K + ++ ED+++ Sbjct: 104 SSRVTIDNIRRIFSSFFSWLEDEDVIIKSPVRRIHKVKSSAKVKDTYSDEDLER-LRDHC 162 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA 246 + + L +G+R + + + K V L Sbjct: 163 NSERDVAMIDILASTGMRIGELVNLNQNDINFDERECVVLGKGNKQRIVYFDARSKIHLQ 222 Query: 247 MTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISAD 299 ++ + Q+M+ K+ KAG+ H R+ AT + D Sbjct: 223 NYLAKRKDANSALFVSLHAPHQRMSINGIENRLKSLGKKAGIAKVYPHKFRRTLATNAID 282 Query: 300 AGATAHELMATYGWKTVDQAETYT 323 G ++ G + +D Y Sbjct: 283 KGMPIEQVQKLLGHERIDTTLHYA 306 >gi|168789851|ref|ZP_02814858.1| integrase [Escherichia coli O157:H7 str. EC869] gi|261227840|ref|ZP_05942121.1| phage integrase [Escherichia coli O157:H7 str. FRIK2000] gi|261258426|ref|ZP_05950959.1| putative integrase [Escherichia coli O157:H7 str. FRIK966] gi|189370614|gb|EDU89030.1| integrase [Escherichia coli O157:H7 str. EC869] gi|323163435|gb|EFZ49261.1| integrase [Escherichia coli E128010] Length = 312 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 45/304 (14%), Positives = 90/304 (29%), Gaps = 18/304 (5%) Query: 28 GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87 G+RIR + Y + E+ + + L LI + K Sbjct: 6 RKGKRIR-KKFKTKSDAVLYERWVLAQQHNNEWKGNSIDRRP-LSVLIDLWWKYHGQLMK 63 Query: 88 A-VNSRISFESYFDQIIRKSGDFDYRKITTKH---IRSGVESRKHTPSSAIQFLTSMRVL 143 + N+ ++ D K+ T +R + PS+ + + ++ + Sbjct: 64 SGHNT----RLKLLRLSEAMDDPCVHKLNTTMLTELRVSRIEQGIQPSTINREIGALSAM 119 Query: 144 FK-WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202 F ++ NP ++ K + +K + Q +E RLA E LL + Sbjct: 120 FTALISSGHFLNDNPVQGLKGMKVNEREMGYLSKSECVQLLDALAENPDERLAVEILLST 179 Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262 G R + + + + + K TV + + + + ++ Sbjct: 180 GARWGEVAALEQRRVLHCRITFSKTKNSKNRTVPISESLFEKIKKRGGKLVFPTLDYPL- 238 Query: 263 KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 K A ++ H +R A+ G L G + Y Sbjct: 239 ------VRDVIKTVAPDVPDGQAVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIY 292 Query: 323 TKGA 326 A Sbjct: 293 AHLA 296 >gi|239828168|ref|YP_002950792.1| integrase [Geobacillus sp. WCH70] gi|239808461|gb|ACS25526.1| integrase family protein [Geobacillus sp. WCH70] Length = 329 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 36/271 (13%), Positives = 81/271 (29%), Gaps = 22/271 (8%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK---------ITTKHIRSGVE 124 + ++ + + + + + + + I I Sbjct: 31 ALEKFLEDCEIRNCRPQTIQYYRNELSVFYKILREQGIEVNIYRMTPEIIKQNVILYMKN 90 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + + L ++R F + R++ ++ E K T + Sbjct: 91 QKNCKTVTINTRLRALRAFFNFLEREKIISKKQNPFHEIKLLKDRKKAVPTFTKEEIHIL 150 Query: 185 ------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVE 236 G + LL +G+R S+ + + I + K V Sbjct: 151 FKQPNLRTFTGVRDLTIMMLLLETGIRASECVGIRLGDIDFQRSRILIQNTKGYRQRYVP 210 Query: 237 LPDGFMKLLAMT-----PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRK 291 + + L + + F++ D + Q ++ K G++ + H R Sbjct: 211 IQKQMKEQLKKYLAIRGTLDHDYLFVSVDDTPLTKRQMQAQIESYGKKCGIHATCHKFRH 270 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETY 322 A +S +AGA EL A G +++ + Y Sbjct: 271 TFARLSVEAGAGIFELQAVLGHSSMEMVKHY 301 >gi|329314680|gb|AEB89093.1| Phage integrase [Staphylococcus aureus subsp. aureus T0131] Length = 345 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 45/329 (13%), Positives = 99/329 (30%), Gaps = 24/329 (7%) Query: 19 GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP--RKKPTTLKWLIS 76 GK Y K G+R R A + K + S TL+ Sbjct: 8 GKKWQYEFKYEGKRYRKKGFRTK------REANSAGLDKLNELRSGFNIDNYITLEEYFE 61 Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVES--RKHTPSSA 133 + K+ + N+ + + I + G + KI + + + ++H + Sbjct: 62 NWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDYSKEHAKETI 121 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVER----PKRKTEGIRPWTKEDMQQFKSFWSEG 189 + ++R A+ + NP V P + + E + Sbjct: 122 RKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEILKDHVRKKR 181 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-------KTGTIITVELPDGFM 242 ++ LA ++ +G R S + ++H+ +I I M Sbjct: 182 TRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTDTSPRYISIAKSDMKHIM 241 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAG 301 +++ I + + +N + K+ + ++H +R + G Sbjct: 242 DVISTFAISYDGYIFKEAGSIINLHAINNALKSACRVNNIPIITSHALRHTHCSYLLAKG 301 Query: 302 ATAHELMATYGWKTVD-QAETYTKGADRI 329 + H + G K + Y+ + Sbjct: 302 VSIHYISKRLGHKNIAITTSMYSHLLEEK 330 >gi|296532590|ref|ZP_06895295.1| tyrosine recombinase XerC [Roseomonas cervicalis ATCC 49957] gi|296267081|gb|EFH13001.1| tyrosine recombinase XerC [Roseomonas cervicalis ATCC 49957] Length = 307 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 36/288 (12%), Positives = 87/288 (30%), Gaps = 31/288 (10%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQII----RKSGDFD----YRKITTKHIRSGV 123 + L ++ + + ++ ++ + + + R G + + +R+ + Sbjct: 11 RALWLDWLE--KERRASRHTLAAYGADLAEFLGFLTRHLGAEPDFAALQALRPADLRAFL 68 Query: 124 ESRKHT----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 R ++ + L ++R ++ ++ + + PK RP T + Sbjct: 69 AERAMRDGVGNATRARQLAAIRGFLRFLAKRHGLVPQAIAGLRGPKVVPPAPRPLTPDQA 128 Query: 180 QQF-------KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG-VQHLQNNIFSIKTQKTGT 231 ++ + F L GLR S++ + K Sbjct: 129 LDVTRDAGSVENSTVLALRDSALFTLLYGCGLRISEALALNLADAPRAGAGLKVRGKGDK 188 Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQ------KMNATQFSIWFKAKATKAGVN-- 283 V + + +A + + +++A + G+ Sbjct: 189 ERVVPVLPAVEQAIAAYLRLRGGGEPDAPLFLGARGGRLDAGMAQRALRNYRRLVGLPES 248 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 + H +R AT AGA + G ++ + YT D RL Sbjct: 249 ATPHALRHSFATHLLTAGADLRSIQELLGHASLSTTQRYT-SVDSARL 295 >gi|260856279|ref|YP_003230170.1| integrase [Escherichia coli O26:H11 str. 11368] gi|260868958|ref|YP_003235360.1| putative integrase [Escherichia coli O111:H- str. 11128] gi|257754928|dbj|BAI26430.1| integrase [Escherichia coli O26:H11 str. 11368] gi|257765314|dbj|BAI36809.1| putative integrase [Escherichia coli O111:H- str. 11128] gi|323156505|gb|EFZ42659.1| integrase [Escherichia coli EPECa14] gi|323176845|gb|EFZ62435.1| integrase [Escherichia coli 1180] Length = 356 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 62/345 (17%), Positives = 112/345 (32%), Gaps = 23/345 (6%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMS---ALTGSTPKREY 60 LPP + R+ Y G+ L A + L+G+ + Sbjct: 9 RRDLPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELLSGNRRESLI 65 Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 TL + Y + + + + S I RK D I+TK + Sbjct: 66 DRIKGADAITLHAWLDRYETILSERGIRPKTLLDYASKIRAIRRKLPDKPLADISTKEVA 125 Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + + + +SA +++ +F+ A+ + +VA NP + K + R E Sbjct: 126 AMLNTYVAEGKAASAKLIRSTLVDVFREAIAEGHVATNPVTATRTAKSEVRRSRLTANEY 185 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 + + + RLA + + +G R D CR + +N I+ KTG + + L Sbjct: 186 VAIYHAAEPLPIWLRLAMDLAVVTGQRVGDLCRMKWSDINDNHLHIEQGKTGAKLAIPLT 245 Query: 239 DGFMKL---------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NK 284 L G ET + + ++ S +F +G+ Sbjct: 246 LTIDALNISLADTLQKCREASGSETIIASTHHEPLSPKTVSKYFTKARNASGLSFDGDPP 305 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + H +R SA G K+ A Y R Sbjct: 306 TFHELRSLSA-RLYRNQIGDKFAQRLLGHKSDSMAARYRDSRGRE 349 >gi|254787261|ref|YP_003074690.1| site-specific recombinase, phage integrase family [Teredinibacter turnerae T7901] gi|237687132|gb|ACR14396.1| site-specific recombinase, phage integrase family [Teredinibacter turnerae T7901] Length = 317 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 44/312 (14%), Positives = 99/312 (31%), Gaps = 44/312 (14%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF-DYRKITTKHIRSGVESR-- 126 +K + + L+ +S ++E + G KI K I V++ Sbjct: 3 VKEACGRFLDYCQYTKKLSHHSIRAYERDLQTFLVVVGRRARLEKIDRKIITKFVDACFA 62 Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-IRPWTKEDMQQFKS 184 + ++ + L ++ LFKW +E + +P E R R + +++ + Sbjct: 63 DGLSHATVKRRLACLKALFKWLENEEILDDSPFRKFELKVRLPHRLPRNLSVQELNKLLR 122 Query: 185 FW------SEGSQPRL------------------AFEFLLYSGLRCSDSCRAGVQHLQ-- 218 + S R+ E L +G+R + +Q + Sbjct: 123 ICRSRLGLPKNSDYRVGEFASVSRSNLNHLTTLVCVELLFTTGVRVGELTGIRLQDIYLQ 182 Query: 219 NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK-------QKMNATQFSI 271 I+ + L+ ++ + + + I Sbjct: 183 EKFIHIRGKGQRERRVFVTDKSIRNLIESYIQLRKITTPIDQNLLVNSRGRPATSQMVRI 242 Query: 272 WFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK--GAD 327 W K + A + + + H R +AT + G + G +++ + Y +D Sbjct: 243 WLKNCSKAANLTRVATPHMYRHSTATELLNNGVDIIYVQKLLGHQSISTTQIYAHVSHSD 302 Query: 328 RIR-LGIKNSRR 338 +R + + N R+ Sbjct: 303 VMRNVALANIRK 314 >gi|189463323|ref|ZP_03012108.1| hypothetical protein BACCOP_04040 [Bacteroides coprocola DSM 17136] gi|189429942|gb|EDU98926.1| hypothetical protein BACCOP_04040 [Bacteroides coprocola DSM 17136] Length = 420 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 94/302 (31%), Gaps = 18/302 (5%) Query: 46 AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESY--FDQII 103 Y SA+ + + E + + S + + + +++ +I Sbjct: 106 EYDSAVLYTDKENEIAAQNERSEQDFIKYFNR-IISKRHPNSSNSIIVNWTRVGELLKIY 164 Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTP-----------SSAIQFLTSMRVLFKWAVRQEY 152 + ++ I+ K + P ++A + + ++ K A EY Sbjct: 165 SQGNPIPFKTISVKLLEDIKMFLLRAPMGGNKKGTISQNTASTYFSILKAGLKQAFVDEY 224 Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212 + ++ V+ T ++Q + + AF F + +GLR SD Sbjct: 225 LTVDISAKVKGITNIETPRVALTMNEVQMLVDTPCKDDVLKRAFLFSILTGLRHSDIQAL 284 Query: 213 GVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS 270 + +Q + + L + + +A+ S Sbjct: 285 KWKQIQQTSKGTWQAIVIQQKTKRPDYKPVIQQALQLCGERPSNDEALVFEGLTDASWIS 344 Query: 271 IWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 KA +G+ K + H R A++ + G + + + G V + YT + Sbjct: 345 RPLKAWIEASGIKKHITFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHIVNE 404 Query: 329 IR 330 + Sbjct: 405 QK 406 >gi|120609369|ref|YP_969047.1| phage integrase family protein [Acidovorax citrulli AAC00-1] gi|120587833|gb|ABM31273.1| phage integrase family protein [Acidovorax citrulli AAC00-1] Length = 401 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 56/358 (15%), Positives = 104/358 (29%), Gaps = 27/358 (7%) Query: 7 LPPFVTKERTRHGKI----IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62 L P + T G+ Y G R+ L E T A A R + Sbjct: 27 LVPGFLCKITPAGRKVFMLQYRTNAGERRKPALGLYGELTVEQARSLAQEWLAQVRRGGD 86 Query: 63 SPRKKPT-----TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITT 116 K T+ L ++ + +++ +++ D+ I+ G + + Sbjct: 87 PSADKAMARSAPTVAELCKKFMEDHSKQRNKPSTQRGYQAVIDRCIVPMLGRMKVQDVKR 146 Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + S ++ H P+ A + + MR +F A Y P Sbjct: 147 PDVASTMKKMVHKPAEANRAFSVMRKMFNLAEVWGYRPDGTNPCRHVPMYPNGKATHLIS 206 Query: 177 EDMQQFKSFWSE----------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226 ++ + + + LA R S+ + + Sbjct: 207 DEEMGKLFRYLDFLETDGLGLDHAILPLAIRLQFEFAGRRSEIVTLQWDWVDLENRRVVW 266 Query: 227 QKTGTIITVELPDGFMKLL-----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 + T + L N+ + M ++ + +AG Sbjct: 267 PDSKTGGMSKPLSEEAHRLLSTASRQDGCPHVFPSPNHPGKPMTTGEYYSGWTRILKRAG 326 Query: 282 V-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSR 337 V + HG+R SAT A++G MA KTV Y D+ +R + Sbjct: 327 VTHVGTHGIRHRSATDIANSGIPVKVGMALTAHKTVAMFMRYVHTEDKPVREAAELVA 384 >gi|253688998|ref|YP_003018188.1| integrase family protein [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755576|gb|ACT13652.1| integrase family protein [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 335 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 47/330 (14%), Positives = 90/330 (27%), Gaps = 41/330 (12%) Query: 15 RTRHGKI--IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 + GK + G+RIR + + + + TLK Sbjct: 5 KLPSGKWLCQCFPYGRDGKRIRKQFSTRGEALSYERRLMA-----DKKGIDTTTSNITLK 59 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---- 128 L+ + H +L+ S + I + GD + E R Sbjct: 60 DLVQRWYD-MHGKTLSSG--DSRYTKLLAICERLGDPFAIDVDKNMFAVYRERRLKGEWN 116 Query: 129 -------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 ++ + + +R +F R L R ++ + + + + Sbjct: 117 PKGKAVLKEATVNREYSYLRAVFSELKRMGEWDKENPLDGIRQFKEGDQELAFLYPEEIK 176 Query: 182 FKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 + S + + L +G R S++ + N + K TV + Sbjct: 177 RLLAACDESDNKDLGIIVRLCLATGARWSEAQDLKQSQILPNRVTFTKTKGNKNRTVPIS 236 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA----HGVRKFSA 294 + LL T + FK +AG+ + H +R A Sbjct: 237 EKMRSLLPKKRGALFTPAYES-------------FKYAIKRAGIELPSGQLTHVLRHSFA 283 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324 + G L G T+ Y Sbjct: 284 SHFMMNGGNILVLQQILGHSTITMTMRYAH 313 >gi|254451038|ref|ZP_05064475.1| phage integrase [Octadecabacter antarcticus 238] gi|198265444|gb|EDY89714.1| phage integrase [Octadecabacter antarcticus 238] Length = 317 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 43/272 (15%), Positives = 86/272 (31%), Gaps = 25/272 (9%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 L + +L S+ S + + G T ++ + + S Sbjct: 28 LRARMIADMSGRNLGPASQSSHQRACKRFAAWLGRSP-ETATPDDVKYFQQHLVESGVSI 86 Query: 134 ---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 Q +T ++ LF+ +R+ + E K +K+++++ + Sbjct: 87 CTRNQTMTGVKFLFRVTLRRHDLVAEIFHLKEPVKV----PLVLSKKEIKRIL-AMAPSL 141 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--GTIITVELPDGFMKLLAMT 248 + R+ G+R + R V + + I+ + V LP + +L Sbjct: 142 KARVMLSLAYGCGMRAGEVVRLKVGDIDSAQKIIRIVQAKGRKDRNVMLPSDILGMLREW 201 Query: 249 PIGKETFFINNDKQKM------------NATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 + T + +A Q S FK A +AG+ + H +R A Sbjct: 202 WKERPTGQDKDLPTPERVLFPGYRGKHLSARQISRLFKETAREAGITKPVTLHTLRHSFA 261 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGA 326 T + G + A G + Y A Sbjct: 262 THLLERGVDIRVIQALLGHSKLTTTARYASVA 293 >gi|332169104|gb|AEE18359.1| integrase family protein [Krokinobacter diaphorus 4H-3-7-5] Length = 295 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 36/268 (13%), Positives = 90/268 (33%), Gaps = 23/268 (8%) Query: 85 GSLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSGVESR---KHTPSSAIQFL 137 + + ++ I++E + + + + I IRS + S + + + + Sbjct: 14 KNYSKHTVIAYEKDVLEFLAFVKITFDESNLVDIHYAQIRSWIVSLVDNDVSNRTVNRKI 73 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE-----DMQQFKSFWSEGSQP 192 +S++ +K+ ++ V +P K P+++ + ++ + Sbjct: 74 SSLKAYYKFLLKIGEVEASPLAKHTSLKTPKRLQIPFSEVEVGAVFDRLKEADDFATLRD 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KTGTIITVEL----PDGFMKLLAM 247 L E L +G+R ++ V + +IK K V + + + +A+ Sbjct: 134 LLIVELLYATGMRRAELVDLTVGSIDVVQKTIKIIGKRNKERIVPMLSSVVVTYDRYIAV 193 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKA------GVNKSAHGVRKFSATISADAG 301 + A +S + + S H +R AT + G Sbjct: 194 RSSVASSGEDALLVTNKGAKIYSTLVYRIINRYFSETSDKLKTSPHILRHSFATHLLNQG 253 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRI 329 A + + G ++ + YT + + Sbjct: 254 ADLNIVKELLGHASLASTQVYTHNSVQA 281 >gi|209551174|ref|YP_002283091.1| site-specific tyrosine recombinase XerD [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536930|gb|ACI56865.1| tyrosine recombinase XerD [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 317 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 42/290 (14%), Positives = 83/290 (28%), Gaps = 35/290 (12%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRKH 128 + + + AVN+ S+E D + + + + Sbjct: 9 VESFLEMMSAERGAAVNTLQSYERDLDDVHAFLTGRSVRLTEAASADLAAYLASLARKGF 68 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 SS + L +MR +K+ + +P ++ PK+ + E++ + S Sbjct: 69 KASSQARRLAAMRQFYKFLYAEGLRTDDPTGILDAPKKGRPLPKTMGVEEVGKLLSQAEA 128 Query: 189 G-----------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVE 236 + E L +G+R S+ + L + K V Sbjct: 129 EAGDAAPGQLQRLRMLALLELLYATGMRVSELVSLPARVLDQEGRFLMIRGKGNKERLVP 188 Query: 237 LPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 L + L F + + + F+ K A +AG+ Sbjct: 189 LSQSAISALKSYGRLLAAENAAAKNPQESPWLFPAASKEGYLPRQVFARDLKNLAIRAGL 248 Query: 283 N---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 S H +R A+ GA + G + + YT + Sbjct: 249 TPSMISPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEER 298 >gi|78777136|ref|YP_393451.1| Phage integrase [Sulfurimonas denitrificans DSM 1251] gi|78497676|gb|ABB44216.1| Phage integrase [Sulfurimonas denitrificans DSM 1251] Length = 393 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 55/369 (14%), Positives = 103/369 (27%), Gaps = 42/369 (11%) Query: 19 GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTP-------KREYINSPRKKPTTL 71 G F G R R P K K TL Sbjct: 21 GHWYLDFYLPSGERQR-GTTKLRATAENLKVIKRQVIPDIYEGLGKEPIGIEEEAKTWTL 79 Query: 72 KWLISEYRKSAHWGSLAVNSR-ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KH 128 + E+ + + ++ + Y + I G + +IT I K+ Sbjct: 80 QDFAEEFFE-LQKTQIRPHTLERNIMHYNNHIAPYFGKRELGRITPLEIERWQNQLLQKY 138 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-- 186 + +F + + ++ A+ + V NP V PK + ++ + Sbjct: 139 KHLTVQKFRSILFSIYDKALHNDLVLKNPLEKVTAPKVQNNIKIEEINPFTEKELNQIIE 198 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ------------------- 227 + + + +G+R + + +IK + Sbjct: 199 HANGYMKNFIKLMAATGMRPGEIIALKWSDIDFEKRTIKVERTRLRAKKGEDIVDGLTKI 258 Query: 228 ---KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284 + D M L +T + F ++ N + F+ ++GV Sbjct: 259 KSSNRFVDMLNATHDSLMAQLELTSNSEYIFLNQSNMPFYNHDIIGVNFRKILKQSGVKA 318 Query: 285 SA-HGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK---GADRIRL-GIKNSRR 338 + +R A+ GA + G K V + YTK D RL I + Sbjct: 319 RPLYNLRHTFASQMISKGADITWVSKMLGHKDVSITLKIYTKFIQEDDETRLKKIAQMDK 378 Query: 339 ISSVVDSDD 347 D+ D Sbjct: 379 FMVKFDNSD 387 >gi|293380240|ref|ZP_06626321.1| putative tyrosine recombinase XerC [Lactobacillus crispatus 214-1] gi|290923207|gb|EFE00129.1| putative tyrosine recombinase XerC [Lactobacillus crispatus 214-1] Length = 302 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 40/276 (14%), Positives = 97/276 (35%), Gaps = 25/276 (9%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS-------GDFDYRKITTKHIRSGVESR 126 + ++ + + +++++ + R G R+ + + R Sbjct: 8 LDQFLSYLQNERHYSAKTVLAYQTDLHEAERFWHENGGFPGWTKVRERDIQVYLQHLAER 67 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-- 184 K SS ++ ++S+ +++ R++ VAI+P + + + + + + + +++Q Sbjct: 68 KLARSSQLRKMSSLHSFYRFLTRRKLVAIDPTQGITLRRGEKKLPQFFYQPELKQVFDSL 127 Query: 185 --FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGF 241 + FE +G+R S+ + L ++ +I K V D Sbjct: 128 KGNKPLTMRNLAMFELFYATGMRVSEVSNLTLNQLDLDLQTILVHGKGNKDRYVAFDDKT 187 Query: 242 MKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289 K L ++ F+NN + + + +AG+ H + Sbjct: 188 KKSLIAYLENARPLLLKNDDEQHVFLNNQGTGITSRGIETVMQKTFNQAGISGKVHPHEL 247 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 R AT + GA + G ++ + YT Sbjct: 248 RHSFATAMLNNGADLRSVQELLGHSSLSATQIYTHV 283 >gi|217978007|ref|YP_002362154.1| integrase family protein [Methylocella silvestris BL2] gi|217503383|gb|ACK50792.1| integrase family protein [Methylocella silvestris BL2] Length = 314 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 46/295 (15%), Positives = 93/295 (31%), Gaps = 35/295 (11%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHI---RSGVESRK 127 LI+ + A N+ ++ + + T I + +E R Sbjct: 10 LIAAFLDMVAAERGGAKNTLEAYARDLADYAGRLKAAKKSPIEATGDDIGAYIASLEKRG 69 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 P+S+ + L+++R L ++ V + Y + +P +E P+R + + ++ + + Sbjct: 70 LKPASSARKLSAIRQLHRFLVAESYRSDDPAAIIEGPRRGRGLPKTLSIAEVDRLLAVSK 129 Query: 188 EGS--------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTI 232 EG + E L +GLR S+ + K G Sbjct: 130 EGLDAAARSPGEQLRALRTACLIELLYATGLRVSELVSLPKSIARGKDPLIPIRGKGGRD 189 Query: 233 ITVELPDGFMKLLAMTP-----------IGKETFFINNDKQKMNATQFSIWFK---AKAT 278 + + +A G F +++ + F+ K A A Sbjct: 190 RLAPISTKAREAIAAYRALLDRLAPGAASGPWLFPADSESGHLTRQAFARDLKTAAAAAG 249 Query: 279 KAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 + S H +R A+ GA + G + + YT D + Sbjct: 250 LSAARVSPHVLRHAFASHLLQNGADLRVVQELLGHADISTTQIYTHVLDERMKAM 304 >gi|254455124|ref|ZP_05068559.1| phage integrase [Octadecabacter antarcticus 238] gi|198263534|gb|EDY87806.1| phage integrase [Octadecabacter antarcticus 238] Length = 320 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 42/261 (16%), Positives = 84/261 (32%), Gaps = 25/261 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA---IQFLTSMR 141 +L S+ S + G T ++ + + S Q +T ++ Sbjct: 39 RNLGPASQSSHLRACKRFAAWLGRSP-ETATPDDVKYFQQYLIESGVSICTRNQTMTGVK 97 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201 L + +R+ + E K +K+++++ + + R+ Sbjct: 98 FLLRVTLRRHDLVAEIFHLKEPVKV----PLVLSKKEIKRIL-AMAPSLKARVMLSLAYG 152 Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKT--GTIITVELPDGFMKLLAMTPIGKETFFINN 259 G+R + R V + ++ I+ ++ V LP + LL + T + Sbjct: 153 CGMRAGEVVRLKVGDIDSDQGIIRIVQSKGRKDRIVMLPVDILSLLRDWWKERPTGQDKD 212 Query: 260 DKQKM------------NATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305 +A Q S FK A +AG+ + H +R AT + G Sbjct: 213 VPAPERVLFPGYRGKHLSARQISRLFKETAREAGITKPVTLHTLRHSFATHLLERGVDIR 272 Query: 306 ELMATYGWKTVDQAETYTKGA 326 + A G + Y A Sbjct: 273 VIQALLGHSKLTTTARYASVA 293 >gi|159037538|ref|YP_001536791.1| site-specific tyrosine recombinase XerD [Salinispora arenicola CNS-205] gi|157916373|gb|ABV97800.1| tyrosine recombinase XerD [Salinispora arenicola CNS-205] Length = 345 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 47/299 (15%), Positives = 93/299 (31%), Gaps = 40/299 (13%) Query: 65 RKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIR 120 R L+ + Y LA N+ S+ + + G + + + Sbjct: 27 RAPVPALQHAVRGYLDHLAVERGLAANTLASYRRDLGRYLDTLASVGVTELASVDPGQVE 86 Query: 121 SGVESRKHT--------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 + + SSA + +++R L ++A+R+ ++P + R Sbjct: 87 VHLARLRAGDDGHPPLAASSAARAASAVRGLHRFALREGLAGVDPSRDLRPAAPPRRLPR 146 Query: 173 PWTKEDMQQFKSFW----------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222 +D+ + + R EFL +G R S++ V L + Sbjct: 147 ALPVDDVLKLLEAAGSVAATGDGAPLALRDRALLEFLYGTGARISEAVGVAVDDLDTDTG 206 Query: 223 SIKTQKTGTI-ITVELPDGFMKLLAMTPIGKET-----------FFINNDKQKMNATQFS 270 ++ + G V + + L + F+N ++ Sbjct: 207 AVLLRGKGGRNRLVPIGGYAVAALRGYLVRARPGLAAAGRGTPAVFLNARGGPLSRQGAW 266 Query: 271 IWFKAKATKAGVNK------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + A +AG+ S H +R AT D GA + G +V + YT Sbjct: 267 AILRGAARRAGLPGVGAEAVSPHTLRHSYATHLLDGGADVRVVQELLGHASVTTTQVYT 325 >gi|254168378|ref|ZP_04875223.1| site-specific recombinase, phage integrase family protein [Aciduliprofundum boonei T469] gi|197622659|gb|EDY35229.1| site-specific recombinase, phage integrase family protein [Aciduliprofundum boonei T469] Length = 255 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 37/261 (14%), Positives = 91/261 (34%), Gaps = 21/261 (8%) Query: 79 RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138 + + + ++ +R ++T + S + S+ Q Sbjct: 6 IEEIKLRKYSYRTGKAYIYVVKNYLR-------SELTPREFLLKYYS-DKSKSTIRQAYF 57 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198 +++ ++ + + + P + + +++++++ + RL F Sbjct: 58 ALKFFYRNVLHERFNEEIPLAKKK-----EKLPVVLSRDEVKRMIYGTH-NIKHRLVLMF 111 Query: 199 LLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF 256 L Y+G+R + + ++ IK K V L L + + + Sbjct: 112 LYYAGMRLQEVRNIRWEDVEFEREIIHIKVAKGDKERVVFLHPNLKNTLEIYGRKSKGYV 171 Query: 257 INNDK-QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGW 313 + + +K + + K A +A +NK + H +R AT + GA + G Sbjct: 172 FMSQRGKKYSPKSIQLIVKNAARRAKINKNVTPHTLRHSFATHLLEGGADIRYIQQLLGH 231 Query: 314 KTVDQAETYTKGADR--IRLG 332 K + + YT A++ +L Sbjct: 232 KHLKTTQIYTHVANKDIKKLA 252 >gi|116492801|ref|YP_804536.1| integrase [Pediococcus pentosaceus ATCC 25745] gi|116102951|gb|ABJ68094.1| Integrase [Pediococcus pentosaceus ATCC 25745] Length = 357 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 34/332 (10%), Positives = 97/332 (29%), Gaps = 17/332 (5%) Query: 13 KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 ++R + +++ + RR + + + S T Sbjct: 5 EKRGKRTRVVVSVMQSGVRRKVSKTFDTKKKAKDWAIMMEA---DKLQNRSIIASSMTFA 61 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TP 130 + ++ + ++ ++ S I +T ++S +++ + Sbjct: 62 DYFKMWMETYKKNDIRPSTYNTYISTLRHIKESFDGITLENLTYSLLQSRLDTIGKTLSK 121 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP---WTKEDMQQFKSFWS 187 + ++ ++ K A+ +Y+ + ++ + T+ + Q + S Sbjct: 122 GTMTLIVSRIKACLKDALYDKYILDDIFTRLKPHGIERSKKTNALSVTEFEKLQDYLYHS 181 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247 + + LA L +G+R + + + +I K+ + V P + + Sbjct: 182 KLDKASLAILVALETGMRIGEVLALQYKDVSIPFNNIHVNKSRSGNIVGKPKNKNSVRDI 241 Query: 248 TPIG-------KETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISAD 299 E + +K + + HG+R A+ Sbjct: 242 KITNELANIISNEKNNSTEFIFNCRRQTVRNRLDSLISKLDLQPITIHGLRHSHASYLLY 301 Query: 300 AGATAHELMATYGWKTVDQAE-TYTKGADRIR 330 G + + + A G + Y + Sbjct: 302 KGVSINYVSARLGHANTSITQKVYAHMLKEEK 333 >gi|228912160|ref|ZP_04075875.1| YdcL (Lambda integrase-like, N-terminal,DNA breaking-rejoining enzyme, catalytic core) [Bacillus thuringiensis IBL 200] gi|228847497|gb|EEM92436.1| YdcL (Lambda integrase-like, N-terminal,DNA breaking-rejoining enzyme, catalytic core) [Bacillus thuringiensis IBL 200] Length = 353 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 35/344 (10%), Positives = 98/344 (28%), Gaps = 41/344 (11%) Query: 11 VTKERTRHGKIIYYFRK-----GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65 + K+ R Y+ + G ++++ + + + Sbjct: 3 IYKDEQRG--TYYFVTRIRQFDGTLKQVKRRGFKTKKEAREAEAKM--------LVEKET 52 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVE 124 T Y +S + ++ + ++ + G+ +I KH+ + Sbjct: 53 TSSLTFSQAADSYFNWYSQRR-KQSSIETIQNVIYNHLVIEFGNLKVDQIIPKHVMNYQN 111 Query: 125 SRKHTPSS--AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + S+ + + +F ++++ + NP ++++ + + + + Sbjct: 112 KIINKYSAKHLKKIHAVLSAIFNFSIKFHGLTNNPAKITGNFEKESNKRMNFWEFEEFKQ 171 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELPDG 240 + + F L YSG R + + + +I + +T Sbjct: 172 FILAVDDPLYKTFFSVLYYSGARKGELMALTWSDINFDEKTININKTEYNRQVTEPKTKA 231 Query: 241 FMKLLAMTPIGKETFFINN------------------DKQKMNATQFSIWFKAKATKAGV 282 +++ + + ++++ F A V Sbjct: 232 SNRIIMLPSFIMDMLHDIKKTAALNAPVKNDYVVFGEFYNSISSSTLRQKFIKYVKIAQV 291 Query: 283 NK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 K H R A+ + G + + G V TY+ Sbjct: 292 KKIVLHEFRHSHASYLINKGVSPLIVAQRLGHSDVATTLNTYSH 335 >gi|238764951|ref|ZP_04625889.1| Integrase [Yersinia kristensenii ATCC 33638] gi|238696810|gb|EEP89589.1| Integrase [Yersinia kristensenii ATCC 33638] Length = 330 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 44/316 (13%), Positives = 107/316 (33%), Gaps = 19/316 (6%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHE-STFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 ++ + G+ R + R+ + + + + + + P + L Sbjct: 4 KQLKDGRYQVDVRPQGAQGKRIRKIFALKSKAQEFEKYILQNFHDKPWQAKPADQRR-LS 62 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--- 129 L+ + ++ +++IR+ GD ++T K + + Sbjct: 63 ELLDVWW---MLNGRNQAYGDTYRVRLEKVIREMGDPRASQMTRKFMLEYRSDKLQAGLM 119 Query: 130 PSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 PSS + L ++ +F + + + NP + + K + + + +++++ Sbjct: 120 PSSINRDLCALSAMFTVLIDAEVFHNENPVHGIRKLKVRNTEMAFLSDDEIERLLER--L 177 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248 R L +G R +++ +H+ N + K G +V + + + L+ Sbjct: 178 EGDARRVAILCLSTGARWNEAAGLRGEHIVGNRVTFFNTKNGKSRSVPVANSVLSLIKTH 237 Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELM 308 G+ +++ QF + ++ H +R AT G L Sbjct: 238 RTGQLY--------RVDYLQFREILREVKPDLPKGQATHVMRHTFATHFMMNGGNIVTLQ 289 Query: 309 ATYGWKTVDQAETYTK 324 G T+ Q TY Sbjct: 290 RILGHATIQQTMTYAH 305 >gi|254452706|ref|ZP_05066143.1| phage integrase [Octadecabacter antarcticus 238] gi|198267112|gb|EDY91382.1| phage integrase [Octadecabacter antarcticus 238] Length = 320 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 42/261 (16%), Positives = 84/261 (32%), Gaps = 25/261 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA---IQFLTSMR 141 +L S+ S + G T ++ + + S Q +T ++ Sbjct: 39 RNLGPASQSSHLRACKRFAAWLGRSP-ETATPDDVKYFQQHLIESGVSICTRNQTMTGVK 97 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201 L + +R+ + E K +K+++++ + + R+ Sbjct: 98 FLLRVTLRRHDLVAEIFHLKEPVKV----PLVLSKKEIKRIL-AMAPSLKARVMLSLAYG 152 Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKT--GTIITVELPDGFMKLLAMTPIGKETFFINN 259 G+R + R V + ++ I+ ++ V LP + LL + T + Sbjct: 153 CGMRAGEVVRLKVGDIDSDQEIIRIVQSKGRKDRIVMLPVDILSLLRDWWKERPTGQDKD 212 Query: 260 DKQKM------------NATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305 +A Q S FK A +AG+ + H +R AT + G Sbjct: 213 VPAPERVLFPSYRGKHLSARQISRLFKETAREAGITKPVTLHTLRHSFATHLLERGVDIR 272 Query: 306 ELMATYGWKTVDQAETYTKGA 326 + A G + Y A Sbjct: 273 VIQALLGHSKLTTTARYASVA 293 >gi|94310181|ref|YP_583391.1| phage integrase [Cupriavidus metallidurans CH34] gi|93354033|gb|ABF08122.1| tyrosine-based site-specific recombinase CMGI-2 [Cupriavidus metallidurans CH34] Length = 399 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 58/371 (15%), Positives = 103/371 (27%), Gaps = 35/371 (9%) Query: 9 PFVTKERTRHGKIIY--YFRKGHG--RRIRLPYPHESTFIPAYMSALTGSTPKREY---- 60 P + T G+ ++ +R G R+ L E T A + A R Sbjct: 29 PGFLCKITPTGRRVFMLQYRTNSGQPRKPSLGLYGELTVEQARVKAQDWLAEVRRGGDPG 88 Query: 61 -INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKH 118 + +K T+ L ++ + +++ ++ D+ II G + Sbjct: 89 GAKAEARKAPTMAELCKKFMEDYSKKRNKPSTQDGYQGVIDRNIIPLLGRKKVHDVKRPD 148 Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 I +E + P+ A + +R +F A Y P ++ Sbjct: 149 IAGLMEKLAYKPTEANKTFGVLRKMFNLAEVWGYRPDGTNPCRHVPMYPPGKETRLIVDE 208 Query: 179 MQQFKSFWSEGSQPR--------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230 E + LA R S+ C L + + Sbjct: 209 EMVRIFRHLEKLEAEGLENYVIPLAIRLQFEFAARRSEICPLEWSWLDFENRRVVWPDSK 268 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW-----FKAKATKAGVNK- 284 + L T +E + + + AGV Sbjct: 269 VGGISKPMSEEAYRLLSTAPRREGCPYVLPSPNDSTKHLTFGEHYGGWCRVLKAAGVPHV 328 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-----------IRLGI 333 HG+R S T A++G M G KTV Y D+ R I Sbjct: 329 GTHGIRHRSTTDIANSGVPTKVGMKLTGHKTVAMFMHYVHTEDKPVRDAAELVASRRQAI 388 Query: 334 KNSRRISSVVD 344 +R+++ Sbjct: 389 TGARQLAEAAA 399 >gi|228950790|ref|ZP_04112918.1| Phage integrase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228808877|gb|EEM55368.1| Phage integrase [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 355 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 39/358 (10%), Positives = 107/358 (29%), Gaps = 30/358 (8%) Query: 11 VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 + K++ R YY + + + A+ + N + Sbjct: 3 IYKDKERG---TYYVKIVYRDYEGNKKQKKKRGFKKKNDAVAWEKEFHKKHN--ESSDMS 57 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT 129 L+ Y + + N+ + + + +I+ +I HIR + Sbjct: 58 FASLVELYMEDI-VHRIRPNTFENKKYIINSRILPFFSKIAINEIKPMHIRKWQNTLISQ 116 Query: 130 PSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 S T + + +AV+ ++ NP V +K + + Sbjct: 117 GFSQTYLKTINNQLNAILNFAVKFYGLSANPSKVVGSIGKKQADSMNFWTLEEFNLFYEQ 176 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----------------QNNIFSIKTQKTG 230 E + ++ F L ++G+R + + + + Sbjct: 177 LEKKESKVIFSILFWTGIRSGELLGLQWKDIDLLSNTISITKSLQKVNGETVINPPKTPK 236 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGV 289 + + +P L+ N+ + + KA + K H + Sbjct: 237 SKRIIHIPLALSALIVKYKNKLYKPKHNDFLFDCSKYYVLYELRRGIKKANIKKIRVHDL 296 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVDSD 346 R A++ + G + + G + ++ + Y+ + +++++++++ Sbjct: 297 RHSHASLLIELGYSPLLISERLGHEKIETTLQVYSHLYPNKHDAV--AKKLNNLMEQK 352 >gi|323169298|gb|EFZ54974.1| integrase [Shigella sonnei 53G] Length = 312 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 45/304 (14%), Positives = 91/304 (29%), Gaps = 18/304 (5%) Query: 28 GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87 G+RIR + Y + E+ + + L LI + K Sbjct: 6 RKGKRIR-KKFKTKSDAVLYERWVLAQQHNNEWKGNSIDRRP-LSVLIDLWWKYHGQLMK 63 Query: 88 A-VNSRISFESYFDQIIRKSGDFDYRKITTKH---IRSGVESRKHTPSSAIQFLTSMRVL 143 + N+ ++ D K+ T +R + PS+ + + ++ + Sbjct: 64 SGHNT----RLKLLRLSEAMDDPCVHKLNTTMLTELRVSRIEQGIQPSTINREIGALSAM 119 Query: 144 FK-WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202 F ++ NP ++ K + +K + Q +E RLA E LL + Sbjct: 120 FTALISSGHFLNDNPVQGLKGMKVNEREMGYLSKSECVQLLDALAENPDERLAVEILLST 179 Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262 G R + + + + + K TV + + + + ++ Sbjct: 180 GARWGEVAALEQRRVLHCRITFSKTKNSKNRTVPISESLFEKIKKRGGKLVFPTLD---- 235 Query: 263 KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 + K A ++ H +R A+ G L G + Y Sbjct: 236 ---YSLVRDVIKTVAPDVPDGQAVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIY 292 Query: 323 TKGA 326 A Sbjct: 293 AHLA 296 >gi|188585853|ref|YP_001917398.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350540|gb|ACB84810.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 305 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 32/281 (11%), Positives = 73/281 (25%), Gaps = 29/281 (10%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHI----RSGV 123 LK+ I ++ + + +L + + + + + + +T HI Sbjct: 3 LKFAIQDFIEDREFKNLTQKTISGYSATLKEFQEFISEQEVVNANDVTQSHIKSYLLHCK 62 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER----------PKRKTEGIRP 173 +++ + P+S L ++++ F + E ++ + + + + Sbjct: 63 KNKNNNPTSINHKLHNLKIFFNYLQDIEVISEKQNPAKKINYVKEDIKIEVFNDYQIKQM 122 Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233 + + + FLL +G R + + +I Sbjct: 123 LDYYRRIKRREKGFYAYRNYTIIVFLLGTGSRLGELINLRWDDIDFINNTIVFYGKKREY 182 Query: 234 TVELPDGFMKLLAMTPIGKE---------TFFINNDKQKMNATQFSIWFKAKATKAGVN- 283 + +K M F N +K+ FK Sbjct: 183 SSIPMTEKLKKELMEYKTYCEQTFESLSEYVFTNRKNEKLTDNAVKCIFKRLKKVMNFKN 242 Query: 284 --KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 S H R A L K + Y Sbjct: 243 VRVSCHTFRHTFAVNMIKNNCDIFTLQKMLRHKDLSMCRRY 283 >gi|295696281|ref|YP_003589519.1| integrase family protein [Bacillus tusciae DSM 2912] gi|295696714|ref|YP_003589952.1| integrase family protein [Bacillus tusciae DSM 2912] gi|295411883|gb|ADG06375.1| integrase family protein [Bacillus tusciae DSM 2912] gi|295412316|gb|ADG06808.1| integrase family protein [Bacillus tusciae DSM 2912] Length = 293 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 32/269 (11%), Positives = 83/269 (30%), Gaps = 21/269 (7%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHT 129 ++ + + L+ N+ + + ++ + R + +K + Sbjct: 7 VLQQMTEDLRLRGLSPNTVDVYTRAARIFLEFC-KRPVDQLDVQDARRFLLFLICEKKRS 65 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 ++ + ++R LF + + + + + ++ ++ Sbjct: 66 AATVNVYNAAVRFLFAVTLNRTFNPLQIPRQK----MPKTLPQVLSRPEIASILEHCH-N 120 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLLAM 247 + + F + SGLR S++ QH+ + + Q L ++LL Sbjct: 121 LKHKALFALIYGSGLRVSEAAAIKTQHIDSRTMRVFVQGGKGAKDRYTVLSHTALQLLRE 180 Query: 248 TPIGKETFFINNDKQ-------KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298 + + S F +A ++K S H +R AT Sbjct: 181 YWKAYRPTHPEGWLFLGTYSLAHITSAAISRAFGDALKRAQISKEVSIHSLRHSFATHLL 240 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGAD 327 + G + ++ G ++ Y A+ Sbjct: 241 EDGVSLLQIKELLGHASIRSTTVYLHLAN 269 >gi|260855535|ref|YP_003229426.1| putative integrase [Escherichia coli O26:H11 str. 11368] gi|312966869|ref|ZP_07781087.1| integrase [Escherichia coli 2362-75] gi|257754184|dbj|BAI25686.1| putative integrase [Escherichia coli O26:H11 str. 11368] gi|312288333|gb|EFR16235.1| integrase [Escherichia coli 2362-75] Length = 311 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 45/304 (14%), Positives = 90/304 (29%), Gaps = 18/304 (5%) Query: 28 GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87 G+RIR + Y + E+ + + L LI + K Sbjct: 6 RKGKRIR-KKFKTKSDAVLYERWVLAQQHNNEWKGNSIDRRP-LSVLIDLWWKYHGQLMK 63 Query: 88 A-VNSRISFESYFDQIIRKSGDFDYRKITTKH---IRSGVESRKHTPSSAIQFLTSMRVL 143 + N+ ++ D K+ T +R + PS+ + + ++ + Sbjct: 64 SGHNT----RLKLLRLSEAMDDPCVHKLNTTMLTELRVSRIEQGIQPSTINREIGALSAM 119 Query: 144 FK-WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202 F ++ NP ++ K + +K + Q +E RLA E LL + Sbjct: 120 FTALISSGHFLNDNPVQGLKGMKVNEREMGYLSKSECVQLLDALAENPDERLAVEILLST 179 Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262 G R + + + + + K TV + + + + ++ Sbjct: 180 GARWGEVAALEQRRVLHCRITFSKTKNSKNRTVPISESLFEKIKKRGGKLVFPTLDYPL- 238 Query: 263 KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 K A ++ H +R A+ G L G + Y Sbjct: 239 ------VRDVIKTVAPDVPDGQAVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIY 292 Query: 323 TKGA 326 A Sbjct: 293 AHLA 296 >gi|254450019|ref|ZP_05063456.1| phage integrase [Octadecabacter antarcticus 238] gi|254450690|ref|ZP_05064127.1| phage integrase [Octadecabacter antarcticus 238] gi|254452057|ref|ZP_05065494.1| phage integrase [Octadecabacter antarcticus 238] gi|254452879|ref|ZP_05066316.1| phage integrase [Octadecabacter antarcticus 238] gi|198264425|gb|EDY88695.1| phage integrase [Octadecabacter antarcticus 238] gi|198265096|gb|EDY89366.1| phage integrase [Octadecabacter antarcticus 238] gi|198266463|gb|EDY90733.1| phage integrase [Octadecabacter antarcticus 238] gi|198267285|gb|EDY91555.1| phage integrase [Octadecabacter antarcticus 238] Length = 317 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 42/261 (16%), Positives = 84/261 (32%), Gaps = 25/261 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA---IQFLTSMR 141 +L S+ S + G T ++ + + S Q +T ++ Sbjct: 39 RNLGPASQSSHLRACKRFAAWLGRSP-ETATPDDVKYFQQHLIESGVSICTRNQTMTGVK 97 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201 L + +R+ + E K +K+++++ + + R+ Sbjct: 98 FLLRVTLRRHDLVAEIFHLKEPVKV----PLVLSKKEIKRIL-AMAPSLKARVMLSLAYG 152 Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKT--GTIITVELPDGFMKLLAMTPIGKETFFINN 259 G+R + R V + ++ I+ ++ V LP + LL + T + Sbjct: 153 CGMRAGEVVRLKVGDIDSDQEIIRIVQSKGRKDRIVMLPVDILSLLRDWWKERPTGQDKD 212 Query: 260 DKQKM------------NATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305 +A Q S FK A +AG+ + H +R AT + G Sbjct: 213 VPAPERVLFPGYRGKHLSARQISRLFKETAREAGITKPVTLHTLRHSFATHLLERGVDIR 272 Query: 306 ELMATYGWKTVDQAETYTKGA 326 + A G + Y A Sbjct: 273 VIQALLGHSKLTTTARYASVA 293 >gi|323343426|ref|ZP_08083653.1| integrase [Prevotella oralis ATCC 33269] gi|323095245|gb|EFZ37819.1| integrase [Prevotella oralis ATCC 33269] Length = 407 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 50/362 (13%), Positives = 98/362 (27%), Gaps = 28/362 (7%) Query: 1 MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60 M ++ + R + +Y K R + + Sbjct: 54 MMGKPKV--HIKHNRRKENLQLYLIAKPRTPAERQQNKETLELAAKIRAEREQEFKESML 111 Query: 61 -INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--------FDY 111 + + Y S L + ++ + Sbjct: 112 GYRLKKDRNINFLDYYQAYIDSYTKKDL-----RMIKIALNRFKDFLKEQYPLYEFSIKP 166 Query: 112 RKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169 IT + VE + A + + ++A+ E + +PC V + Sbjct: 167 DLITKDMMEQFVEYLQSRSVGEGAKSIYQRFKKVVRYAIDHEVMLKDPCKGVVCKVDEQI 226 Query: 170 GIRP---WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226 + + + +E R AF F LY GLR D +++ +K Sbjct: 227 LRKDVLSMDEIQTLIQCHYENENPNVRRAFIFCLYCGLRFCDVKDLTYKNIDYTNRLLKF 286 Query: 227 QKTGTIITVELPDGFMKL---LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 ++ T + L L ++ + K +AG+N Sbjct: 287 EQNKTKGHSAHSGVVIPLNDGLLSLIGDAPDDLNSSIFNLPSYESCCKSVKRWVKRAGIN 346 Query: 284 K--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 K S H R A + GA + + G + E YT+ D +L + + Sbjct: 347 KHISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVD--KLKSEAINSLPE 404 Query: 342 VV 343 + Sbjct: 405 LK 406 >gi|254452498|ref|ZP_05065935.1| phage integrase [Octadecabacter antarcticus 238] gi|198266904|gb|EDY91174.1| phage integrase [Octadecabacter antarcticus 238] Length = 319 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 46/272 (16%), Positives = 90/272 (33%), Gaps = 25/272 (9%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 L + +L S+ S + G T ++ + + S Sbjct: 28 LRARMIADMSGRNLGPASKSSHLRACKRFAAWLGRSP-ETATPDDVKYFQQYLVESGVSI 86 Query: 134 ---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 Q +T ++ LF+ +R+ + E K +K+++++F + Sbjct: 87 CTRNQTMTGVKFLFRVTLRRHDLVAEIFHLKEPVKI----PLVLSKKEIKRFL-AMAPSL 141 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--GTIITVELPDGFMKLLAMT 248 + R+ GLR + R V + ++ I+ ++ V LP + LL Sbjct: 142 KARVMLSLAYGCGLRAGEVVRLKVGDIDSDQEIIRIVQSKGRKDRNVMLPVDILSLLRDW 201 Query: 249 PIGKETFFIN------------NDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 + T + ++A Q S FK A +AG+ + H +R A Sbjct: 202 WKERPTSQDRDVPVSERVLFPGYCGKYLSARQISRLFKETAQEAGITKPVTLHTLRHSFA 261 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGA 326 T ++G + A G + Y A Sbjct: 262 THLLESGVDIRVIQALLGHAKLTTTALYASVA 293 >gi|306519780|ref|ZP_07406127.1| putative tyrosine recombinase [Clostridium difficile QCD-32g58] Length = 290 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 41/280 (14%), Positives = 92/280 (32%), Gaps = 22/280 (7%) Query: 73 WLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESRKH- 128 +I Y L+ N+ S+ + + + I I S + + Sbjct: 2 DIIEGYIDYIKDKKKLSENTVASYFMDIKKYMEYINQKSIKLVDIVENDIISYLIKLEKD 61 Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + ++ + ++S++ + NP +++PK K E I T+E++++ +F Sbjct: 62 NVSIATIARMISSIKSFHDYLFLNHICTNNPAKDIKKPKIKKENINILTEEEIERLLNFP 121 Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDGF 241 + + + FE L +G++ S+ ++ + +I I + L D Sbjct: 122 KLTTPKLIRDKAIFEVLYGTGIKVSELVEMNIEDIDLDIDYIYCNSCCKNQRVIPLCDIT 181 Query: 242 MKLLAMTPIGKETFFINNDK---------QKMNATQFSIWFKAKATKAGVNKS--AHGVR 290 L + Q+ K + A ++K+ +R Sbjct: 182 KLYLEKYLKEARPKMAVEGEKSLFVSSLGQRFTRQGLWKVIKKYSNLANIDKNINPTMLR 241 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 A + GA + G + + Y D+ R Sbjct: 242 HSFAIHLLNEGANIAVVSKILGNVNLSSLQVYLNHIDKKR 281 >gi|260769153|ref|ZP_05878086.1| hypothetical bacteriophage integrase [Vibrio furnissii CIP 102972] gi|260614491|gb|EEX39677.1| hypothetical bacteriophage integrase [Vibrio furnissii CIP 102972] Length = 322 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 45/317 (14%), Positives = 97/317 (30%), Gaps = 20/317 (6%) Query: 16 TRHGKIIY---YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 + GK + +G+R R Y + + +E++ P TL Sbjct: 4 KKEGKKWLVDLRPQGRNGKRYR-RQFDTKFEATQYEKHVLATAHDKEWLEKP-ADRRTLS 61 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS- 131 LI+ + K + + + ++ + ++ G +IT K + ++ + Sbjct: 62 ELIALWWK---YEGQSKKTAEAYLKEVKLVDKELGFPKAHQITHKLLADYRMAQLNKGRA 118 Query: 132 --SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + + + + +F + + +S + K + D G Sbjct: 119 MTTFNRKMNCLSNVFTALIAVKEFHNPHPVSGFKLKVPKTREMAFLSVDEMNHLLSVLSG 178 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249 ++A L +G R ++ + + + K G TV + + Sbjct: 179 DSYKVAKLC-LATGARWGEAEELKGSTVSHGKVTFLDTKNGKDRTVPISQELQDEIVTGK 237 Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMA 309 G+ + F + K ++AH +R A+ G L Sbjct: 238 SGRLFKDCYAE--------FYVQLKQCNFDLPKGQAAHVLRHTFASHFMMNGGNILTLQK 289 Query: 310 TYGWKTVDQAETYTKGA 326 G T+ Q TY A Sbjct: 290 ILGHATIQQTMTYAHFA 306 >gi|217965870|ref|YP_002351548.1| Int [Listeria monocytogenes HCC23] gi|217335140|gb|ACK40934.1| Int [Listeria monocytogenes HCC23] gi|307569587|emb|CAR82766.1| integrase [Listeria monocytogenes L99] Length = 392 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 56/393 (14%), Positives = 115/393 (29%), Gaps = 58/393 (14%) Query: 1 MTPSLRLPPFVTKERTRHGKIIYYFRKG---HGRRIRLPYPHESTFIPAYMSALTGSTPK 57 M R F T E+ + G G G IR+P + L + Sbjct: 1 MAKKKRY--FGTIEKLKTG-WRMRVTVGYNEKGTPIRVPRFTTTKNAAQREKELAAFIDE 57 Query: 58 REYINSPRKKPTTLKWLIS-EYRKSAHWGSLAVNS-RISFESYFDQIIRKSGDFDYRKIT 115 E T + + E+ +L+ ++ +E +I G KIT Sbjct: 58 LEKTGYTAPSNLTFREFVETEWLVKHVPANLSYDTGHDYYEQIKRRIYPVLGGVALSKIT 117 Query: 116 TKHIRSGVESRKHTP-------------------SSAIQFLTSMRVLFKWAVRQEYVAIN 156 T I + ++ + + S ++ + + A + ++IN Sbjct: 118 TLQIVNLIDDLQKSGKRLEDSDNKRGVKDKPLSAHSIRNIYYALSSVLEVARKWRVISIN 177 Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL-YSGLRCSDSCRAGVQ 215 P V+ P RK + E ++Q ++ +G R ++ + Sbjct: 178 PAKGVDLPSRKKRAHTIYQGESLEQMYEALKTEPLQFQVMIYIAVVTGCREAELVALERK 237 Query: 216 HLQNNIFSIKTQKTG---------------------TIITVELPDGFMKLLAMT------ 248 H+ I ++T I L D ++ L Sbjct: 238 HIDELSNKILFEQTIIDVVGEGVRVVSDTKNSVFGKVDIPQWLTDLIIQYLQDVEPGTGA 297 Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHEL 307 G F + + ++ + + + H +R SAT+ G + Sbjct: 298 WTGHHFLFADETGKPKRPDSVYQRWRRFMERHHLPRIRFHDLRHTSATLLISQGEHIKVV 357 Query: 308 MATYGWKT-VDQAETYTKGADR-IRLGIKNSRR 338 K+ + A+TY + ++ ++ Sbjct: 358 QERLRHKSMITTADTYAHVLQETHKKAAESFKK 390 >gi|218667058|ref|YP_002425468.1| site-specific recombinase, phage integrase family [Acidithiobacillus ferrooxidans ATCC 23270] gi|218519271|gb|ACK79857.1| site-specific recombinase, phage integrase family [Acidithiobacillus ferrooxidans ATCC 23270] Length = 349 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 51/316 (16%), Positives = 97/316 (30%), Gaps = 18/316 (5%) Query: 17 RHGKIIY-YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75 + GK + F +G+RIR + A + + + T Sbjct: 4 KRGKTWWISFTTPNGQRIR-RSAGTTEKAQAEELHDSLKAQAWRQVQLGDRPAYTWDDAG 62 Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS--GVESRKHTPSSA 133 + S ++ E + + R + I + ++ + + S+A Sbjct: 63 VRWLDEKAHK----ASLVTDEIFLAWLQDHFRGVPLRDLNRDRIMTVLQIKKTQTSASTA 118 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193 ++ +R + + AV ++ P L T+ +R T Q R Sbjct: 119 NHYMALIRSMLRAAVEWGWLDYPPLL--RPYPTPTQRVRWLT--PEQAVLLLNELPPHLR 174 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQ----NNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249 F L +GLR S+ L K ITV L D + +L Sbjct: 175 DMAAFSLATGLRRSNVTGLEWSQLDLGRKIAWIHADQAKARKPITVPLDDVAISILRAQI 234 Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELM 308 + +++ + +K +AG+ H +R A+ AG + L Sbjct: 235 GNHPIYVFTYCGKRVTQVN-TKAWKKALERAGIENFRWHDLRHTWASWHIQAGTPLNTLQ 293 Query: 309 ATYGWKTVDQAETYTK 324 GW + + Y Sbjct: 294 DLGGWHSSEMVRKYAH 309 >gi|114331554|ref|YP_747776.1| tyrosine recombinase XerC [Nitrosomonas eutropha C91] gi|114308568|gb|ABI59811.1| tyrosine recombinase XerC subunit [Nitrosomonas eutropha C91] Length = 321 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 41/290 (14%), Positives = 97/290 (33%), Gaps = 32/290 (11%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIR-----------KSGDFDYRKITTKHIRS 121 L+ EY SL+V ++ + ++R K D ++ + IR Sbjct: 16 LLGEYLTYLSSTRSLSVQTQHHYRRDLIALVRCTIAQHENGNNKISDISLTRLHSHDIRH 75 Query: 122 GVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + S + L++ R +++ +R + NPCL V PK + + ++ Sbjct: 76 FIARLHSSGLSGRSLARMLSAWRGFYRYLIRHHHHNGNPCLDVRVPKSPHKLPHALSPDE 135 Query: 179 -----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTI 232 S ++ FE SGLR ++ + + +++ Sbjct: 136 AAQLLTFNPSSNDMLATRDLAIFELFYSSGLRLTELTQLQPTDIDFTGGTVRVTGKGNKT 195 Query: 233 ITVELPDGFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGVN- 283 V + + ++ L + + F++ ++++ + +A ++ Sbjct: 196 RIVPVGELALRALQAWLPLRSAWLIPGETALFLSQRGRRIHPRTIAYRLHQRAQLQNLDS 255 Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R A+ + + G ++ + YT D L Sbjct: 256 RVHPHTLRHSFASHLLQSSGDLRAVQEMLGHSSIRSTQVYTH-LDFQHLA 304 >gi|329847560|ref|ZP_08262588.1| tyrosine recombinase xerD [Asticcacaulis biprosthecum C19] gi|328842623|gb|EGF92192.1| tyrosine recombinase xerD [Asticcacaulis biprosthecum C19] Length = 303 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 36/299 (12%), Positives = 87/299 (29%), Gaps = 30/299 (10%) Query: 69 TTLKWLISEYRKSAH-WGSLAVNSRISF----ESYFDQIIRKSGDFDYRKI---TTKHIR 120 TL + + + ++ ++ Y D + + G+ + T+ +R Sbjct: 1 MTLDDARTAWFGWLKGQRRCSAHTLAAYGHAFRGYTDYLRQHWGEASLDDVARVTSADLR 60 Query: 121 SGVESRKH-----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 + + + S Q L++++ + + P+ K RP Sbjct: 61 GWMAYLRGKENPLSARSLAQHLSAVKSFHSYLDLHLDRGNVQVGLMRGPRLKATLPRPLN 120 Query: 176 KED--------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227 ++ E S+ + L GLR S++ V T Sbjct: 121 EDQAIGLLAETRMDADRDDWENSRDEAVYMLLYGLGLRISEALSLTVADTPLGDSLRITG 180 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM-------NATQFSIWFKAKATKA 280 K + + + + + + + D+ + + ++ Sbjct: 181 KGNKMRVLPVLEAVREAIERYKSQQPFILAATDRLFRAKRGGELSPRHVQATMQHLRSRL 240 Query: 281 GV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 G+ + H +R AT +GA + G ++ + YT+ L + Sbjct: 241 GLSDRATPHALRHSFATHMLGSGADLRSIQELLGHASLSTTQKYTQVDAERLLSAYAAA 299 >gi|282882199|ref|ZP_06290838.1| phage integrase [Peptoniphilus lacrimalis 315-B] gi|281297964|gb|EFA90421.1| phage integrase [Peptoniphilus lacrimalis 315-B] Length = 360 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 45/365 (12%), Positives = 97/365 (26%), Gaps = 44/365 (12%) Query: 11 VTKERTRHG--KIIYYFRK----GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64 +T +R ++ K FR G ++ + Y + N Sbjct: 1 MTSKRMKNNFNKWYCSFRYVNLDGETKQKKKEGFSTKKEADEY--------ERNFLNNIK 52 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGV 123 K L Y + + ++ S E ++I+ D I + ++ Sbjct: 53 FNPEMNFKSLYKMYLEDMKPR-IKEHTLASKEYITENKILPYFKDMKISGIGSIEVQRWQ 111 Query: 124 E----------SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 ++ + P+ + +F +AV+ + NP V K + Sbjct: 112 NLLLQAKNPKTNKPYAPTYLKTINNQLTAIFNYAVKFHNLKNNPVHKVGTIGEKNAPEKE 171 Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI- 232 + E L F L +SG R + + I K+ Sbjct: 172 IWSIEEFNEFINLVEDKTLHLGFNILYWSGCRIGELLALTWNDIDFKNNIINIDKSYQRL 231 Query: 233 ---------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277 + + +K + ++ +F Sbjct: 232 NCKDVITEPKTKKSIRKITVVSDVIKEIESYKKLFYKPGDDDRIFNCTKHKFEHAIINIC 291 Query: 278 TKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKN 335 + + + H +R A++ + G L G + V TY+ + Sbjct: 292 KRNNLKRIRIHDLRHSHASLLLNEGINIVALSKRLGHEKVSTTLNTYSHMIPSEDKILNV 351 Query: 336 SRRIS 340 ++S Sbjct: 352 MEKLS 356 >gi|158320856|ref|YP_001513363.1| integrase family protein [Alkaliphilus oremlandii OhILAs] gi|158141055|gb|ABW19367.1| integrase family protein [Alkaliphilus oremlandii OhILAs] Length = 312 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 39/288 (13%), Positives = 78/288 (27%), Gaps = 29/288 (10%) Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE---- 124 TL+ + + ++E G+ +IT ++ Sbjct: 2 ITLQNAKELFLMENQLKGNTEKTIQNYERMITYFQNFIGNKAMEEITLFDVKQYQLYLSS 61 Query: 125 -----------SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 R + + + +RV WA + + + ++ PK + I Sbjct: 62 KKAEFKFTDKIDRTLSKKTIQTYTRQIRVFLNWAYAESLLKEDIGSKIKLPKAPKKVIEI 121 Query: 174 WTKED----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQK 228 + E+ + G + + +L SGLR + + + K Sbjct: 122 LSDEEIELLYKCINDNTEFGLRNKCMISLMLDSGLRREEVITLDLDCIHFTQNIIKVHGK 181 Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ--------KMNATQFSIWFKAKATKA 280 + L KLL G + + + + Sbjct: 182 GEKERIIPLGVYTKKLLFKYLNGYRPMPSYPTNRVFISQEKVPVTMDVMKMLMLRLKKRT 241 Query: 281 GV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 G+ H +R AT AG A L G +++ Y+ A Sbjct: 242 GIQRLKPHLLRHTFATKYLIAGGDAFSLQMILGHTSLEMTRMYSHLAS 289 >gi|15827711|ref|NP_301974.1| site-specific tyrosine recombinase XerD [Mycobacterium leprae TN] gi|221230188|ref|YP_002503604.1| site-specific tyrosine recombinase XerD [Mycobacterium leprae Br4923] gi|34222781|sp|Q49890|XERD_MYCLE RecName: Full=Tyrosine recombinase xerD gi|2065218|emb|CAB08282.1| XerD [Mycobacterium leprae] gi|13093262|emb|CAC31746.1| integrase/recombinase [Mycobacterium leprae] gi|219933295|emb|CAR71460.1| integrase/recombinase [Mycobacterium leprae Br4923] Length = 316 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 46/277 (16%), Positives = 91/277 (32%), Gaps = 38/277 (13%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSGVESRKHT----------PS 131 S+A N+ S+ + + D D K+ + + + + Sbjct: 21 RSIAANTLSSYRRDLIRYSKHLSDRGIEDLAKVGEHDVSEFLVALRRGDPDSGVAALSAV 80 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 SA + L ++R L ++AV + V ++ +V P + T +++ S+ Sbjct: 81 SAARALIAVRGLHRFAVAEGLVDLDVARAVRPPTPGRRLPKSLTVDEVLALLESVGGESR 140 Query: 192 P--------RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFM 242 R E L +G R S++ V + ++ K G V + + Sbjct: 141 ADGPLVLRNRALLELLYSTGSRISEAVGLDVDDVDTQARTVLLQGKGGKQRLVPVGRPAV 200 Query: 243 KLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSA 286 + L + F+N +++ + A AG+ S Sbjct: 201 QALDAYLVRGRSDLARRGPGMLATPAIFLNARGGRLSRQSAWQVLQDAAEHAGITSGVSP 260 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 H +R AT + GA + G +V + YT Sbjct: 261 HMLRHSFATHLLEGGADIRVVQELMGHASVTTTQIYT 297 >gi|327398855|ref|YP_004339724.1| integrase family protein [Hippea maritima DSM 10411] gi|327181484|gb|AEA33665.1| integrase family protein [Hippea maritima DSM 10411] Length = 370 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 60/330 (18%), Positives = 102/330 (30%), Gaps = 26/330 (7%) Query: 29 HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI-SEYRKSAHWGSL 87 HG+R+R + + A S R+ + + +Y A Sbjct: 41 HGKRVRQTVSGTNLQGAKEIEAKIKSELVSGEYYDRRQAKIAFEQFVKEKYLPYAKEKK- 99 Query: 88 AVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVL 143 S ES I I+ I + + P + + MR + Sbjct: 100 ---SYNREESLLRLWIFPIIDKKTLNNISPLDIEKVKKEMIKNEKAPRTIEYAIAVMRQV 156 Query: 144 FKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-RLAFEFLLY 201 F A+ Y NP V++PK+ +R TKE+ ++ S + S LY Sbjct: 157 FNKAIEWGFYFGANPAAKVKKPKKDNRRMRFLTKEEAEKLLSELKKHSIQVYEMAYLSLY 216 Query: 202 SGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259 +G+R + Q + +IK K + D LL ++ + Sbjct: 217 TGMRFGEIANLTWQDIDFQNGIITIKDPKNSESRVAYMTDSLRDLLYAKYKREKPKNSSG 276 Query: 260 DKQKMNATQFSIW---FKAKATKAGV---------NKSAHGVRKFSATISADAGATAHEL 307 N + FK K G+ H +R A+ A G + + Sbjct: 277 FVFHRNGKPYKQIPGTFKTVVRKLGLNDGITDPRDKVVFHTLRHTFASWLAIQGTPIYTI 336 Query: 308 MATYGWKTVDQAETYTKGA-DRIRLGIKNS 336 G KT+ E Y+ D R ++ Sbjct: 337 KELMGHKTLAMTERYSHLIPDAKREAVEKL 366 >gi|296107529|ref|YP_003619230.1| hypothetical protein lpa_02800 [Legionella pneumophila 2300/99 Alcoy] gi|295649431|gb|ADG25278.1| hypothetical protein lpa_02800 [Legionella pneumophila 2300/99 Alcoy] Length = 410 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 52/332 (15%), Positives = 95/332 (28%), Gaps = 34/332 (10%) Query: 31 RRIRLPYPHESTFIPAYMSA------LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHW 84 +RI L + T A A + + K TLK +Y K+ Sbjct: 59 KRITLGKYGQITAEEARKQAKHLLGQIAKGDNPIAEKKINKIKSITLKEAFHDYLKAR-- 116 Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS--AIQFLTSMRV 142 L + ++S Q+I D IT + I T S A + +R Sbjct: 117 KDLKPLTIKDYQSILKQVISDWFDKPLMNITREMIAKRHAQYGQTNSKARANYAMRVLRA 176 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPW------TKEDMQQFKSFWSEGS------ 190 +F +A + + + P R W + W +G Sbjct: 177 VFNFAAHEYQLEDGQPIIAINPVEYLSHTRSWYRVDRKNTMIKSHQLAAWHQGLTRLGEQ 236 Query: 191 -------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFM 242 + F +L++GLR +++ + + + F+ Sbjct: 237 EDYSQAMMWKDYFLLVLFTGLRRTEAASLCWKDVDFKDKTFTVQDTKNREVHTLPMSDFL 296 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQF--SIWFKAKATKAGVNKSAHGVRKFSATISADA 300 L + + A +GV+ + H +R+ AT + Sbjct: 297 YELFLRRKQFKMNEFVFPSPSKTGHVIDPRKAMLKVAELSGVSFTVHDLRRTFATTAESL 356 Query: 301 GATAHELMATYGWK-TVDQAETYT-KGADRIR 330 A+ L K D Y + +R+R Sbjct: 357 DLPAYALKRLLNHKMNTDVTAGYIVRDVERLR 388 >gi|288801073|ref|ZP_06406529.1| integrase/recombinase XerC [Prevotella sp. oral taxon 299 str. F0039] gi|288332007|gb|EFC70489.1| integrase/recombinase XerC [Prevotella sp. oral taxon 299 str. F0039] Length = 297 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 41/276 (14%), Positives = 94/276 (34%), Gaps = 24/276 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKH 128 +I E+ + ++ + S+ + D + IT +RS +ES Sbjct: 2 IIDEFLNYLKYEKRRSLLTVESYSEDLKAFQSYFTNLDSLLSWETITANDVRSWIESMMD 61 Query: 129 TPSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 ++A + L+++R +++A + +P +V PK++ + + +M++ Sbjct: 62 KGNTATTINRRLSALRSFYRFARLRLAYEKDPAKNVIGPKKQKLLPQFLKEVEMERLLDD 121 Query: 186 WSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD 239 +G + R+ +G+R S+ + T K V + Sbjct: 122 VLQGDDFESVRDRIIILLFYETGVRLSELTALNCCDIDLMQRQIKVTGKRNKQRIVPFGE 181 Query: 240 GFMKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKAG--VNKSAHGV 289 L + + D +M +T + ++ +S H + Sbjct: 182 KLSLELRAYILIRGERENIVDDALFVSNKGSRMPSTTIRRRVEHYLSQVSTLKKRSPHVL 241 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 R AT+ + A + G +++ E YT Sbjct: 242 RHTFATVMLNNDADIESVRHLLGHESLKATEVYTHT 277 >gi|134299970|ref|YP_001113466.1| phage integrase family protein [Desulfotomaculum reducens MI-1] gi|134052670|gb|ABO50641.1| phage integrase family protein [Desulfotomaculum reducens MI-1] Length = 301 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 37/281 (13%), Positives = 85/281 (30%), Gaps = 26/281 (9%) Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY--RKITTKHIRSGVESR 126 T + ++ + +L+ + ++ + I D D + T R V Sbjct: 1 MTNEQMVKMFLIYQESRNLSPRTLEWYKYITAKFINYCNDNDIQIDSLKTPEARQWVNWL 60 Query: 127 K------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + + +S + +++ +F + + EY+ NP V + K I + ++++ Sbjct: 61 QKGSETQYKGNSINCHIRAIKTMFNYFMEDEYIDKNPFHKVSKIKVDNTIIHTFEPDEIK 120 Query: 181 QFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITV 235 + + ++ + + L + GLR S+ + + + K V Sbjct: 121 KMLAQLNKNTFYDLRDNLMLRIMYDCGLRVSEIINLKITDIDTDKNMFKVFGKGHKERMV 180 Query: 236 ELPDGFMKLLAMTPIGKE----------TFFINNDKQKMNATQFSIWFKAKATKAGVN-- 283 + L + N ++ + AG+ Sbjct: 181 PFGRSVKRELVKYLPKRNKAVPHDLDEGYLLCTNQGTPLHKRNILRKIRIVGQGAGIEGK 240 Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 S H R A AG L G +++ Y Sbjct: 241 RLSPHTYRHSFAKQYLMAGGDLFSLQTIMGHSSLNSTRRYI 281 >gi|312913689|dbj|BAJ37663.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] Length = 336 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 55/319 (17%), Positives = 112/319 (35%), Gaps = 21/319 (6%) Query: 14 ERTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 ++ G+ R G+RIR + + AY + + +E+ + P + L Sbjct: 10 KKLDDGRYEVDVRPRGTSGKRIR-RKFNRKSEAQAYEKYVLTNFHDKEWQDKPADRRL-L 67 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--- 128 LI+ + + N S++ ++I R+ G+ ++T + SR H Sbjct: 68 SDLIALWW---SYHGKNHNYGDSYKKRLEKINREMGEPRVYELTRNFLMKYRASRLHDGV 124 Query: 129 TPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + + + +M +F+ + E + NP V + + + + ++E+++ Sbjct: 125 SAGTVNRDFCTMSSMFRLLIDMEEFHHENPFHKVRKLRLENTEMSFLSEEEIRDLLMA-- 182 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247 R L +G R ++ +H+ +N + KTG TV + + Sbjct: 183 LTGDDRRVVVLCLNTGARWGEASNLKAEHVISNRVTFVKTKTGPARTVPISQEIADYILT 242 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307 GK N + + ++ H +R AT G L Sbjct: 243 RKSGKLFDT--------NYERVRDVLRKVKPDLPRGQALHVLRHTFATHFMINGGNIITL 294 Query: 308 MATYGWKTVDQAETYTKGA 326 G T++Q TY A Sbjct: 295 QRILGHTTIEQTMTYAHFA 313 >gi|113866150|ref|YP_724639.1| site-specific tyrosine recombinase XerC [Ralstonia eutropha H16] gi|113524926|emb|CAJ91271.1| Site-specific recombinase XerC/Integrase [Ralstonia eutropha H16] Length = 359 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 47/299 (15%), Positives = 94/299 (31%), Gaps = 41/299 (13%) Query: 74 LISEYRKSAH-WGSLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVESRKH 128 L++ Y LA ++ S+ R + + T HIR+ Sbjct: 28 LVTRYLDWLRGSRKLAEHTLTSYSRDLRVLQGHAARYAPGVALLALQTHHIRNFAARLHG 87 Query: 129 TP---SSAIQFLTSMRVLFKWAVRQEY-VAINPCLSVERPKRKTEGIRPWTKEDMQ---- 180 +S + L++ R F+WA R + V +NP V P+ + + E Sbjct: 88 AGLVGTSIARTLSAWRGFFQWAARHGHGVTVNPVDGVRAPRSGHALPKALSVEHAVALVA 147 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----------- 229 ++ + + E SGLR S+ + +++ + + Sbjct: 148 HPAGTDAQALRDQAVHELFYSSGLRLSELVQLDLRYADADGYRSSGWLDLAGAEVTVTGK 207 Query: 230 -GTIITVELPDGFMKLLAMT-------------PIGKETFFINNDKQKMNATQFSIWFKA 275 +V + ++ L P F+ ++++ + K Sbjct: 208 GSRQRSVPVGSKAIEALRAWLAVRDTLLRPGALPEDAHALFLGPRGRRLSMRTVQLRLKQ 267 Query: 276 KATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 +A +AGV H +R AT + + G ++ + YT D L Sbjct: 268 QALRAGVPADVHPHMLRHSFATHVLQSSGDLRAVQEMLGHASISTTQVYT-ALDFQHLA 325 >gi|301168983|emb|CBW28580.1| DLP12 prophage; predicted integrase [Haemophilus influenzae 10810] Length = 347 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 50/317 (15%), Positives = 96/317 (30%), Gaps = 16/317 (5%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 + R Y F +G RIR S A A + + + Sbjct: 9 KKRGEIWHYSFTSPNGERIR-RSARTSDKNQALQLASKEYNECWRIFKLGERPEYSWQEA 67 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT---KHIRSGVESRKHTPS 131 + ++ + N + + GD +I K I+S Sbjct: 68 VLQWLEEKPKRKQDRNMIYG----LVWLDKYLGDKKLSEIDRNLIKFIQSEKAREGVKAR 123 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 + L +RV+ + AV E++ P + + IR ++ + + E + Sbjct: 124 TINAVLQQIRVVLRAAVEWEWIDKCPAI--KFLPEPKRRIRWLSEYEEIRLMQELPEHLK 181 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250 P +F + +GLR S+ + + + + + K + + Sbjct: 182 P--IVQFAILTGLRMSNITQLKWSQIDLPKKMAWISSEQSKTGNGIGIPLNDKAIEVIVA 239 Query: 251 GKETFFINNDKQKMNATQF--SIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHEL 307 N NA + + F+ +AG+ + H +R AT +G + L Sbjct: 240 QFGKHKENVFTYNGNAVKIANTRAFRESLKRAGIKDFRFHDLRHTWATRHIMSGTPLYVL 299 Query: 308 MATYGWKTVDQAETYTK 324 GW D Y Sbjct: 300 QELGGWTKTDTVRKYAH 316 >gi|260844019|ref|YP_003221797.1| putative integrase [Escherichia coli O103:H2 str. 12009] gi|257759166|dbj|BAI30663.1| putative integrase [Escherichia coli O103:H2 str. 12009] Length = 312 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 45/304 (14%), Positives = 91/304 (29%), Gaps = 18/304 (5%) Query: 28 GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87 G+RIR + Y + E+ + + L LI + K Sbjct: 6 RKGKRIR-KKFKTKSDAVLYERWVLAQQHNNEWKGNSIDRRP-LSVLIDLWWKYHGQLMK 63 Query: 88 A-VNSRISFESYFDQIIRKSGDFDYRKITTKH---IRSGVESRKHTPSSAIQFLTSMRVL 143 + N+ ++ D K+ T +R + PS+ + + ++ + Sbjct: 64 SGHNT----RLKLLRLSEAMDDPCVHKLNTTMLTELRVSRIEQGIQPSTINREIGALSAM 119 Query: 144 FK-WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202 F ++ NP ++ K + +K + Q +E RLA E LL + Sbjct: 120 FTALISSGHFLNDNPVQGLKGMKVNEREMGYLSKSECVQLLDALAENPDERLAVEILLST 179 Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262 G R + + + + + K TV + + + + ++ Sbjct: 180 GARWGEVAALEQRRVLHCRITFSKTKNSKNRTVPITESLFEKIKKRGGKLVFPTLD---- 235 Query: 263 KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 + K A ++ H +R A+ G L G + Y Sbjct: 236 ---YSLVRDVIKTVAPDVPDGQAVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIY 292 Query: 323 TKGA 326 A Sbjct: 293 AHLA 296 >gi|167760713|ref|ZP_02432840.1| hypothetical protein CLOSCI_03098 [Clostridium scindens ATCC 35704] gi|167661600|gb|EDS05730.1| hypothetical protein CLOSCI_03098 [Clostridium scindens ATCC 35704] Length = 354 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 49/360 (13%), Positives = 110/360 (30%), Gaps = 40/360 (11%) Query: 13 KERTRHGKIIYYFR---KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 ++ + GK + +R RR + + I Sbjct: 4 EKDKKTGKWLIQYRYTDWQGKRRKSTKRGFATKLEAEEWL-------RNFLITQNADFDM 56 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR-- 126 + Y L ++ + + + +I+ G IT IR Sbjct: 57 KFEEFWKMYCADMETR-LREHTMRTKKYIVELKILPYFGKKRVNDITAADIRQWQNELIK 115 Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDMQQFKS 184 ++P+ + +F +AVR + NPC+ + E + WT E+ ++F Sbjct: 116 KGYSPTYLKTINNQLSAIFNYAVRYYDLKSNPCVKAGSMGKSKAEEMDFWTGEEFRKFID 175 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------------ 232 +AF L ++G+R + + + +I K+ Sbjct: 176 SIMNKRLSYMAFMTLYWTGMRLGELLALTPKDVDLEKRTISITKSYQRLGRKDVITPPKT 235 Query: 233 ----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAH 287 + +P+ + ++ + + ++GV + H Sbjct: 236 PKSKRVITIPEFLAADIKDYMDSLYDLQEDDRLFPITKYYLEHEMQRGIKESGVKRIRLH 295 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVDSD 346 +R A++ + G + E+ G + V+ TY L +++ +DS+ Sbjct: 296 DLRHSHASLLIELGFSPLEIANRLGHEKVETTLNTYAH------LYPNKQAKLADRLDSE 349 >gi|320532036|ref|ZP_08032926.1| site-specific tyrosine recombinase XerC [Actinomyces sp. oral taxon 171 str. F0337] gi|320135749|gb|EFW27807.1| site-specific tyrosine recombinase XerC [Actinomyces sp. oral taxon 171 str. F0337] Length = 307 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 43/301 (14%), Positives = 93/301 (30%), Gaps = 33/301 (10%) Query: 69 TTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG---------DFDYRKITTKH 118 T L++ YR L+ ++ ++ ++ G D + Sbjct: 3 RTRADLLASYRSYLALQRDLSGHTVRAYLVDVSDLLSFLGVGEKDTEPVDPALATLDLAD 62 Query: 119 IRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 +R + + H+ ++ + S+R WA +A + + P+ T Sbjct: 63 LRDWLAAMAASGHSRATLARRSASVRTFSSWAFEAGLLASDVAARLRAPRVDNRLPGVLT 122 Query: 176 KEDMQQFK--------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT- 226 + Q + E L +G+R S+ V L ++ +++ Sbjct: 123 TQQASQLLKTAADLASDRQVLAVRDLAIIETLYATGVRVSELIGLDVADLDHSQRTLRVL 182 Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINN---------DKQKMNATQFSIWFKAKA 277 K TV + L + + ++++ Sbjct: 183 GKGRKERTVPYGLPAARALEEWLRRRGEICAVDAGGALFLGARGRRIDPRAVRDVVHRLC 242 Query: 278 TKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKN 335 + A V HG+R +AT GA + G ++ + YT A+R+R + Sbjct: 243 SAAQVPDLGPHGLRHSTATHVLGGGADLRSVQELLGHSSLATTQRYTHVSAERLRSVYEQ 302 Query: 336 S 336 + Sbjct: 303 A 303 >gi|304394248|ref|ZP_07376171.1| tyrosine recombinase XerC [Ahrensia sp. R2A130] gi|303293688|gb|EFL88065.1| tyrosine recombinase XerC [Ahrensia sp. R2A130] Length = 342 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 36/303 (11%), Positives = 78/303 (25%), Gaps = 38/303 (12%) Query: 76 SEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGD--------FDYRKITTKHIRSGVESR 126 + + +A + +++ Q D D+ + +R+ + R Sbjct: 40 ERWLRWMETERRMAARTMEAYDRDLQQFCLFLTDYHGRPAKVKDFADLRPISLRAYLAQR 99 Query: 127 KHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----- 178 ++T P + + L + + RQ + ++ P++ +P + Sbjct: 100 RNTGAGPRTLARGLAGIGSFIRHLERQGLASSAGITAMRAPRQPRTLPKPVRADQALRLT 159 Query: 179 --MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 +Q ++ L GLR ++ L + T T T+ Sbjct: 160 ETSEQLHEEPWIAARDAALMTLLYGCGLRLGEALGLTPFDLGITNMAAPTVTTDTLRITG 219 Query: 237 LPDGFM----------------KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280 +L F + F Sbjct: 220 KGGKTRLVPLLPVVGEAIASYLRLCPHVIEADAPIFRGMRGGPVQPAVFQRAMARMRGAL 279 Query: 281 GVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338 G+ + H +R AT G + G ++ + YT D L + Sbjct: 280 GLPSTATPHALRHSFATHLLGNGGDLRTIQELLGHASLSTTQKYT-AVDTESLMASWAAA 338 Query: 339 ISS 341 Sbjct: 339 HPR 341 >gi|229103030|ref|ZP_04233719.1| DNA integration/recombination/invertion protein [Bacillus cereus Rock3-28] gi|228680445|gb|EEL34633.1| DNA integration/recombination/invertion protein [Bacillus cereus Rock3-28] Length = 368 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 49/365 (13%), Positives = 106/365 (29%), Gaps = 43/365 (11%) Query: 17 RHGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + G G+R + + T A + + TL Sbjct: 7 KRGNKYCIVIDIGADPETGKRRQKWFSGYKTKKEAEKD-VAKKITELNDGTFIEPSKVTL 65 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESY-FDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 K + E+ K + ++ +E +I G + K+ I+ + Sbjct: 66 KDYLLEWLK-VKEMEVDKSTYAGYECIVLKHLIPALGKNTFNKLNVIQIQQFYRNLTGKL 124 Query: 131 SSAIQFL--TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 S++ L + A+ Q + NP +PK++ I+ WT+E+++ F Sbjct: 125 SNSRIILIHRVLNTALNQAIAQNLITTNPAKFAAKPKKERTSIQTWTEEEVKTFLLHSQ- 183 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--------------GTIIT 234 S+ F + +G+R + Q + + ++ +T + T Sbjct: 184 NSRYHTGFILAITTGMRLGEVLGLRWQDVDFDNHTVTINQTLGHDNKIKQSAKTSSSKRT 243 Query: 235 VELPDGFMKLLAMTPIGKETFF--------------INNDKQKMNATQFSIWFKAKATKA 280 + +P + L + + + F + KA Sbjct: 244 LPIPIETINALKEHHLFIKKEKLRFGNAYNDSNLIVCTMSGNIVYRDYFRKSYYTIIQKA 303 Query: 281 GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRR 338 V K H +R AT+ G + G + Y+ + + Sbjct: 304 NVPKIKFHDLRHTHATLLLKQGVHPKIVSERLGHSNISMTLSVYSHVLPN--MQEDAVKN 361 Query: 339 ISSVV 343 + + Sbjct: 362 FAKNI 366 >gi|115522171|ref|YP_779082.1| tyrosine recombinase XerD [Rhodopseudomonas palustris BisA53] gi|115516118|gb|ABJ04102.1| tyrosine recombinase XerD subunit [Rhodopseudomonas palustris BisA53] Length = 326 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 46/302 (15%), Positives = 94/302 (31%), Gaps = 46/302 (15%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGV---ESRK 127 LI + N+ ++ S + G T +R+ + ++R Sbjct: 11 LIELFLDMLAAEQGAGKNTLDAYRSDLADLAAFLGHAKTSLSGADTHALRAYLIDLDARG 70 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185 + +S + L+++R LF++ + + A +P + PKR + + D+ + Sbjct: 71 YKSASVARKLSALRHLFRFLLTERVRADDPAAILSGPKRGRGLPKVMSIADVDRLLEHAK 130 Query: 186 -----------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTII 233 ++ E L +GLR S+ V + + I + Sbjct: 131 RLAEAPGRAGEQVRAARLYCLLEVLYATGLRVSELVSLPVSAARRDARMIVVRGKGNKER 190 Query: 234 TVELPDGFMKLLAMTPI-----------------------GKETFFINNDKQKMNATQFS 270 V L + + +A K F + + + F+ Sbjct: 191 LVPLNESSKRAMAAYLEAIAAQDRERDKEKGKAKPGKAAAQKWLFPSSGESGHLTRQHFA 250 Query: 271 IWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 K A AG++ S H +R A+ GA + G + + YT + Sbjct: 251 RELKELAAAAGLSARLISPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVE 310 Query: 328 RI 329 Sbjct: 311 ER 312 >gi|256617839|ref|ZP_05474685.1| integrase [Enterococcus faecalis ATCC 4200] gi|256854186|ref|ZP_05559550.1| predicted protein [Enterococcus faecalis T8] gi|256960097|ref|ZP_05564268.1| integrase [Enterococcus faecalis Merz96] gi|256597366|gb|EEU16542.1| integrase [Enterococcus faecalis ATCC 4200] gi|256709746|gb|EEU24790.1| predicted protein [Enterococcus faecalis T8] gi|256950593|gb|EEU67225.1| integrase [Enterococcus faecalis Merz96] Length = 382 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 51/368 (13%), Positives = 110/368 (29%), Gaps = 54/368 (14%) Query: 11 VTKERTRHGKIIYYFRK--------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62 + + + ++G+ +YF+ G + AL + + Sbjct: 2 IKQYKKKNGEKAWYFKTYLGTDPLTGKKKYTTKRGFRTQKEAK---IALARLEMEIQKNG 58 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122 P T + + + ++ + + + I+ G + KI+T + + Sbjct: 59 IPSSTNITFQEVAFMWLENYKNTVKESSYSRTEIIFRKHILPSFGKIEISKISTAYCQKI 118 Query: 123 VESRKHTPSSAIQ--FLTSMRVLFKW-----AVRQEYVAINPCLSVERPKRKTEGIRPWT 175 V + SS F+ M +FK+ Q V + + I+ +T Sbjct: 119 VNTWHSKGSSKQYPLFINYMNQVFKFAINIGVTNQNPVINVIVPKNQDIITSEKKIKFYT 178 Query: 176 KEDMQQFKSFW------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------- 218 K+ +Q F + F L +SG R + L Sbjct: 179 KDQLQIFLKSIEQSESTYITIRDYTLFRLLAFSGCRIGELLALTWDDLNIKTGELQINKT 238 Query: 219 -----NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA------- 266 + S + + T+ L + +L + ++ + + + + Sbjct: 239 IAKSDHYYVSNTPKTKKSNRTLILDAKTITILKKWKLEQKKYLLKLGYTQPSRIFTNEEN 298 Query: 267 -----TQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA- 319 + + KA + HG R A++ AGA E+ G + Sbjct: 299 EFTINQAITDRYNIYRKKANLPNIGLHGFRHTHASLLYYAGADHKEVQERLGHANIKTTL 358 Query: 320 ETYTKGAD 327 +TYT + Sbjct: 359 DTYTHLTN 366 >gi|238784731|ref|ZP_04628734.1| Tyrosine recombinase [Yersinia bercovieri ATCC 43970] gi|238714327|gb|EEQ06336.1| Tyrosine recombinase [Yersinia bercovieri ATCC 43970] Length = 267 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 42/252 (16%), Positives = 81/252 (32%), Gaps = 17/252 (6%) Query: 97 SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYV 153 ++ + G ++ + +RS V K SS L+++R W V Q + Sbjct: 2 QALMEMGEQMGLAHWQTLDAAQVRSLVSRSKRAGLHASSLALRLSALRSFLNWLVSQGVM 61 Query: 154 AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRLAFEFLLYSGLRCSDSC 210 NP V P+ + +++ + + R E + +GLR S+ Sbjct: 62 QANPAKGVSTPRSGRHLPKNIDVDEVDKLLDIDLNDPLAVRDRAMLEVMYGAGLRLSELV 121 Query: 211 RAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMT-------PIGKETFFINNDKQ 262 +H+ + K V + + L + F+ N + Sbjct: 122 GMNCKHVDLASGEVWVMGKGSKERKVPIGKTAVTWLYHWLALRELFEPQDDAIFLANTGK 181 Query: 263 KMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320 +++A F K GV + H +R AT ++ + G + + Sbjct: 182 RISARNVQKRFAEWGVKQGVSSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQ 241 Query: 321 TYTKGADRIRLG 332 YT D L Sbjct: 242 IYTH-LDFQHLA 252 >gi|116671017|ref|YP_831950.1| tyrosine recombinase XerC subunit [Arthrobacter sp. FB24] gi|116611126|gb|ABK03850.1| tyrosine recombinase XerC subunit [Arthrobacter sp. FB24] Length = 308 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 42/289 (14%), Positives = 87/289 (30%), Gaps = 30/289 (10%) Query: 77 EYRKSAHWGSLAVNSRISFESY---FDQIIRKSGDFDYRKITTKHIRSG---VESRKHTP 130 Y + + ++ ++ S + G D I +R + + Sbjct: 19 RYLEGERAR--SPHTVRAYLSDVHSLLTVAAADGATDLDGIELATLRRWLGAQSEARMSR 76 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----- 185 S+ + + R WAVR+E + +P L ++ PKR+ ++ + + Sbjct: 77 STLARRAATARSFTSWAVREELLGSDPALRLKAPKRERSLPGVLHQQQVLRVVDHLKAAA 136 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 + R E L +G+R + V L + +++ TV Sbjct: 137 EDGGPLALRDRAMVELLYATGVRVGELAGMDVDDLDPDRRTLRVVGKGNKERTVPYGLPA 196 Query: 242 MKLLAMTPIGKETFFINNDKQK----------MNATQFSIWFKAKATKAGVNK--SAHGV 289 + + ++ Q K G H + Sbjct: 197 AVAVDDWLRRGRPVLAVDGSGPALFLGARGRRVDQRQVRTVVKDVLDALGDTAATGPHAL 256 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSR 337 R +AT D GA + G ++ + YT +R+R + + Sbjct: 257 RHSAATHLLDGGADLRAVQEILGHSSLATTQIYTHVSVERLRQSYQQAH 305 >gi|257415531|ref|ZP_05592525.1| integrase [Enterococcus faecalis AR01/DG] gi|257157359|gb|EEU87319.1| integrase [Enterococcus faecalis ARO1/DG] Length = 382 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 51/368 (13%), Positives = 110/368 (29%), Gaps = 54/368 (14%) Query: 11 VTKERTRHGKIIYYFRK--------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62 + + + ++G+ +YF+ G + AL + + Sbjct: 2 IKQYKKKNGEKAWYFKTYLGTDPLTGKKKYTTKRGFRTQKEAK---IALARLEMEIQKNG 58 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122 P T + + + ++ + + + I+ G + KI+T + + Sbjct: 59 IPSSTNITFQEVAFMWLENYKNTVKESSYSRTEIIFRKHILPSFGKIEISKISTAYCQKI 118 Query: 123 VESRKHTPSSAIQ--FLTSMRVLFKW-----AVRQEYVAINPCLSVERPKRKTEGIRPWT 175 V + SS F+ M +FK+ Q V + + I+ +T Sbjct: 119 VNTWHSKGSSKQYPLFINYMNQVFKFAINIGVTNQNPVINVIVPKNQDIITSEKKIKFYT 178 Query: 176 KEDMQQFKSFW------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------- 218 K+ +Q F + F L +SG R + L Sbjct: 179 KDQLQIFLKSIEQSESAYITIRDYTLFRLLAFSGCRIGELLALTWDDLNIKTGELQINKT 238 Query: 219 -----NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA------- 266 + S + + T+ L + +L + ++ + + + + Sbjct: 239 IAKSDHYYVSNTPKTKKSNRTLILDAKTITILKKWKLEQKKYLLKLGYTQPSRIFTNEEN 298 Query: 267 -----TQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA- 319 + + KA + HG R A++ AGA E+ G + Sbjct: 299 EFTINQAITDRYNIYRKKANLPNIGLHGFRHTHASLLYYAGADHKEVQERLGHANIKTTL 358 Query: 320 ETYTKGAD 327 +TYT + Sbjct: 359 DTYTHLTN 366 >gi|188590222|ref|YP_001919587.1| phage integrase [Clostridium botulinum E3 str. Alaska E43] gi|188500503|gb|ACD53639.1| phage integrase [Clostridium botulinum E3 str. Alaska E43] Length = 389 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 49/391 (12%), Positives = 116/391 (29%), Gaps = 57/391 (14%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 +P + ++R +G +++R H + + T + ++ + Sbjct: 1 MPKSIYRKRVINGTEYFFYRLRHDNLRKPKDLYARTEKELKAKIKKLNYELD---HNIQS 57 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVE 124 + SE+ + + +++I +E+ + I+ + D +++T+K I+ Sbjct: 58 NKNSFGVFFSEWLFDIKFMEIKPSTKIKYETVYRNHIKNSEISDIKIKELTSKDIQIYYN 117 Query: 125 SRKHTPSS---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + S + K+A +++ + S+ PK + + Sbjct: 118 NLIKKGKSTTLVKTIHKLIAPCIKYAYNNDFIIKDFTGSLIIPKETEKDKLNKESSVIPF 177 Query: 182 FKSFWSE------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII-- 233 E G++ F L SGLR + + I K ++ Sbjct: 178 TLEEQKEFIKAIKGNKFEALFITALNSGLREGELLALTWNDINLKEKYINVNKNLGVVTE 237 Query: 234 -------------------------------------TVELPDGFMKLLAMTPIGKETFF 256 + LA F Sbjct: 238 VSKDGRGVSKLEVQTPKTRKGKRQVSIPNFLITVLKEYKKQQSKNRLKLANKYTNNNLIF 297 Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKT 315 + +N + + +K ++ + H +R AT + G A + G Sbjct: 298 CDEYGNYLNRDKVTYQYKKLLKESKIKTRKFHDLRHTYATRLFELGEQARTVQELLGHSD 357 Query: 316 VDQA-ETYTKGADRIRLGIKNSRRISSVVDS 345 V TYT D ++ K ++ ++ ++ Sbjct: 358 VSVTLNTYTHVLDDMK--EKAVSKLDNLFNA 386 >gi|93005052|ref|YP_579489.1| phage integrase [Psychrobacter cryohalolentis K5] gi|92392730|gb|ABE74005.1| tyrosine recombinase XerC subunit [Psychrobacter cryohalolentis K5] Length = 349 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 36/296 (12%), Positives = 90/296 (30%), Gaps = 29/296 (9%) Query: 59 EYINSPRKKPTTLKWLIS---EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115 + + L L++ + + + ++ ++ + +Q+ Sbjct: 27 AELAITIEADAALSELLAPVHRWLNVLSVRNHSPHTLTAYFAGLNQLALFLRGKRLTWTR 86 Query: 116 ------TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169 +HI ++ K + +S Q L+++R + W + ++ INP + + Sbjct: 87 CDKRQLAQHISQRLDEDKLSLASVQQELSAIRHFYGWLIEEDLARINPTTGYQLKRSPRP 146 Query: 170 GIRPWTKEDMQQFKSFWSEGS--------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221 + + Q + + + FE L SGLR + + + Sbjct: 147 LPSIADVDLLTQLLDQEIPDTPEQARLWLRDKAMFELLYSSGLRVGELVALDIVDVDLAD 206 Query: 222 FSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFINNDK---------QKMNATQFSI 271 ++ V L + + + D+ +++ Sbjct: 207 LRVRVTGKGNKTRLVPLGIKAADAIRRYLPHRNLWVEQMDQALFISEKLGTRLSTRAVQQ 266 Query: 272 WFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 K AT+AG+ ++ H +R A+ + G + + YT Sbjct: 267 RLKVAATRAGIAQNMYPHLLRHCFASHMLSGSGDLRAVQEMLGHSDISTTQIYTHV 322 >gi|326789825|ref|YP_004307646.1| integrase family protein [Clostridium lentocellum DSM 5427] gi|326540589|gb|ADZ82448.1| integrase family protein [Clostridium lentocellum DSM 5427] Length = 376 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 57/350 (16%), Positives = 109/350 (31%), Gaps = 54/350 (15%) Query: 18 HGKIIYYFRK-GHG-RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75 HG + + FR G +L E A+ + + N + L Sbjct: 6 HGNV-WRFRIMKDGIPYTKLFEGTEKKAKEAHEA----FKVDVKRGNVGTNENMKFNELC 60 Query: 76 ----SEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRS---GVESRK 127 +Y K + ++ +++ ++ ++ GD I HI+ + Sbjct: 61 QLVTDQYVKV----NCKYSTVEFYKNTYNTHLLPFFGDKKLSSIKPLHIQQFVTHLSELD 116 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQFKSFW 186 PS+ L+ ++ F+ AV+ E + NPC+ V+RP+++ R D + Sbjct: 117 LAPSTVSNNLSCLKKTFEMAVKWELIIKNPCMYVDRPQKRKYQNRGQLMTVDEMKKLLEI 176 Query: 187 SEGS------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------- 230 E + AF L GLR S+ + + I+ K Sbjct: 177 YENLSTKPSHMHKCAFYIALGCGLRNSEIRALTLDDIDFENNIIRVNKQFGKYTEKGKVV 236 Query: 231 ----------TIITVELPDGFMKLLAMTPIGKET-------FFINNDKQKMNATQFSIWF 273 +I + PD + + + F+ + + S +F Sbjct: 237 EGYITTKSESSIRDIYAPDFVIAAIKNYISTLDCIPLSKQLFWSARTNKPVGRQCLSTFF 296 Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 + H +R AT+ A G L G ++ Y Sbjct: 297 TNILKNNNLPVIDFHDLRHLHATLLASKGVNMKSLSNRMGHSKLETTNIY 346 >gi|225175747|ref|ZP_03729740.1| integrase family protein [Dethiobacter alkaliphilus AHT 1] gi|225168671|gb|EEG77472.1| integrase family protein [Dethiobacter alkaliphilus AHT 1] Length = 300 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 42/277 (15%), Positives = 88/277 (31%), Gaps = 27/277 (9%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQI-----IRKSG-DFDYRKITTKHIRSG----VESR 126 +Y + L+ + + ++ TKH+R + R Sbjct: 14 DYLEIE--RGLSDRTVDGYRMDIGVFARLMVREFFPQGMVLNQLETKHVRRFLVYLKKER 71 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + + + L S+R FK+ YV NP + K T ++ + + Sbjct: 72 DNNAGTRNRKLASLRSYFKFLEIHGYVEKNPVQQLRNVKTAKLLPVFLTIDESDRLINAA 131 Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 + + LL +G R + + +L ++ + L D Sbjct: 132 KKQAKPPYRDHAMMRVLLQTGCRVEELVSLNIGNLNLEEKYMRIIGKGNKERMIPLTDKT 191 Query: 242 MKLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRK 291 LA ++ F+N+ ++ + F +AG+N+ + H +R Sbjct: 192 CAALAEYLEARVPKDEKEKAVFLNHLGMRITYPGVQLVFNRLCEEAGLNRGRLTVHKLRH 251 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 T+ +AG + G +++ E Y R Sbjct: 252 TCFTMLMNAGVDLPTIKDIAGHESISSTEIYVHVTQR 288 >gi|53720954|ref|YP_109940.1| putative bacteriophage integrase [Burkholderia pseudomallei K96243] gi|52211368|emb|CAH37357.1| putative bacteriophage integrase [Burkholderia pseudomallei K96243] Length = 284 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 38/286 (13%), Positives = 78/286 (27%), Gaps = 23/286 (8%) Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-- 126 T + ++ Y + S R + ++ G + +R V R Sbjct: 1 MTFEEIVGIYLSAKDHRS---KQRDMY--SLKRLQPYFGGRAISALKRVDVRKYVAVRLA 55 Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ--FK 183 S+ + L + + + + P + E W Sbjct: 56 DGVQESTVKRELKFLSAAINFVRLECDCSDLPNPAQSLGLNGGEHRVRWISRAEASALIL 115 Query: 184 SFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVEL 237 S + +P LA L +G R ++ + ++ K G V L Sbjct: 116 SASAYAKRPHLANFVRLALSTGCRKNELLALDWCRVDFEHSFLRLNAEHTKNGKRRVVPL 175 Query: 238 PDGFMKLLAMTPIGKETF-----FINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRK 291 + L E ++ F A + G+ H +R Sbjct: 176 NSAALSALRDQRDWVERKCSGSEWVFPAWSGKRIQTLQKGFNAACARVGIENFRIHDLRH 235 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNS 336 A+ G + + + G ++ E Y + D+ R ++ Sbjct: 236 TFASWLVMEGVSLYVVKDLLGHSSITVTERYAHLSPDQGRAAVQKL 281 >gi|107024205|ref|YP_622532.1| phage integrase [Burkholderia cenocepacia AU 1054] gi|116688470|ref|YP_834093.1| phage integrase family protein [Burkholderia cenocepacia HI2424] gi|105894394|gb|ABF77559.1| phage integrase [Burkholderia cenocepacia AU 1054] gi|116646559|gb|ABK07200.1| phage integrase family protein [Burkholderia cenocepacia HI2424] Length = 347 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 47/346 (13%), Positives = 107/346 (30%), Gaps = 25/346 (7%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 +T G RK + + Y++ + T+ Sbjct: 6 KTPSGTWKAVIRKIGWP-TSAKTFRTKRDAEDWARRTEDEMVRGVYLSRAPSEKLTVSAA 64 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134 + Y + ++ S + G + ++ + + + R S Sbjct: 65 LKRYMEEVSVTK-KATTQRSESFSAKHLEAFFGKYSMAAVSAELVAKYRDERLAAGKSNN 123 Query: 135 QF---LTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 L + LF+ A+++ + NP +V +P R ++++ Q+ + Sbjct: 124 TVRLELAMLGHLFRMAIQEWGIGLTFNPVANVRKPSPGAGRDRRLSRDEHQRLFAAADAH 183 Query: 190 SQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVELPDGFMKLL 245 S P L + L +G+R S+ + + + + K G+ V L ++L Sbjct: 184 SNPMLGWIVRLAVETGMRSSEITGLCRSQVDLDRRVVTLRDTKNGSSRVVPLTREAAEVL 243 Query: 246 A--------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSATI 296 F K F + G V+ H +R + + Sbjct: 244 RAALDNPIRPIDTDLVFFGEPGRDGKRKPYVFQKLWTGIVRDLGMVDLHFHDLRHEAVSR 303 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342 +AG + E+ + G K++ + YT +++ ++ Sbjct: 304 LVEAGLSDQEVASISGHKSMQMLKRYTHL-----RAEDLVQKLDTL 344 >gi|302343665|ref|YP_003808194.1| integrase family protein [Desulfarculus baarsii DSM 2075] gi|301640278|gb|ADK85600.1| integrase family protein [Desulfarculus baarsii DSM 2075] Length = 397 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 52/366 (14%), Positives = 112/366 (30%), Gaps = 44/366 (12%) Query: 11 VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAY--MSALTGSTPKREYINSPRKKP 68 V ++ G + R+ +L ++ A +AL E P Sbjct: 5 VREKVKGSGAWWVFVNHDGKRKSKLVGDKKAAKEAARKIEAALASGKFIVEDEAMP---- 60 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRK 127 T L E+ + ++ ++ + I+R+ G +IT I+ + + Sbjct: 61 -TFGELAKEWIALTVPATCKASTLKDYQRLLANHILRRFGSKPVDQITRLMIKDFLLQKG 119 Query: 128 HTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + S+ L + + AV Y+A NP + R + + + + Q Sbjct: 120 KSGLAGSTVRHMLNVISGVMTRAVEAGYIAHNPGQRMGRGVIRIKDRKADIEPLTTQELD 179 Query: 185 FWSEGSQPRL-----AFEFLLYSGLRCSDSCRAGVQHLQNN-----------IFSIKTQK 228 E + R L +G+R ++ + ++T K Sbjct: 180 HLLEVVRDRFPNAFPMILTLARTGMRLGEARGLEWGDIDFRGGFIMIRRGVSRERMETPK 239 Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF--------------SIWFK 274 +G V++ +L ++ + K+ F + + Sbjct: 240 SGKGRRVDMSRQLAAVLLDLRARRKREALAKGWGKVPDRVFLSAEGKPVHDYHFRNRIWY 299 Query: 275 AKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA-DRIRL 331 AG+ + H +R A++ G + + G ++ +TY A D R Sbjct: 300 KALEYAGLRRVRIHDLRHTFASLLIQNGESLAYVRDQLGHCSISLTVDTYGHLAPDGNRN 359 Query: 332 GIKNSR 337 + Sbjct: 360 AVDKLD 365 >gi|291526089|emb|CBK91676.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629] gi|291527174|emb|CBK92760.1| Site-specific recombinase XerD [Eubacterium rectale M104/1] Length = 336 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 38/312 (12%), Positives = 94/312 (30%), Gaps = 25/312 (8%) Query: 40 ESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF 99 + + + + E + + + + + + + Sbjct: 31 SIAQMKKLQEVILQTFAENEAEKAEIAN----DKFLEMFLDAKTIEGCSERTIKYYRETV 86 Query: 100 DQIIRKSGDFDYRKITTKHIRSGVESRK----HTPSSAIQFLTSMRVLFKWAVRQEYVAI 155 ++ ++ + RKITT+ IR + + + + ++ F W ++Y+ Sbjct: 87 QHLLSQT-ETSVRKITTEEIREYLSDYQKLNNCSNVTIDNVRRNISSFFSWLEEEDYILK 145 Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215 +P + + K KT + E +++ + +E + + L +G+R + + Sbjct: 146 SPMRRIHKIKTKTVVKSVISDEGIEKLRDNCNE-KRDLAIIDLLYSTGIRVGELVNLNID 204 Query: 216 HLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI------NNDKQKMNATQ 268 + I K V L + + ++ + Sbjct: 205 DIDLEGRECIVYGKGDKERRVYFDAKAKVHLKDYINTRTDKNKALFVTLDAPHDRLKISG 264 Query: 269 FSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT---- 323 I + K + + H R+ AT + D G ++ G +D Y Sbjct: 265 VEIRLRKLGRKLSLERIHPHKFRRSMATRAIDKGMPIEQVQKILGHSQIDTTMQYAMVNQ 324 Query: 324 ---KGADRIRLG 332 K A + L Sbjct: 325 NNVKTAHQKYLA 336 >gi|148285126|ref|YP_001249216.1| phage-related integrase [Orientia tsutsugamushi str. Boryong] gi|146740565|emb|CAM81175.1| phage-related integrase [Orientia tsutsugamushi str. Boryong] Length = 442 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 41/354 (11%), Positives = 105/354 (29%), Gaps = 46/354 (12%) Query: 22 IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN------------SPRKKPT 69 Y + G + + G P E K Sbjct: 61 YYKIKIGDFPDLTVAEAR-KKIQQLKRDIAKGINPMDERRKINKERREKREKRLKLKNEL 119 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESR 126 T + + + + + S++ +++ + +IT + I+ + Sbjct: 120 TFRQV------HEKYTEYSSHHHRSWKRTSERVKIYAAFLYNKKISEITKEDIQKIFDEI 173 Query: 127 KHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 +A L ++ +F A+ + NP ++R K+++ +E + K Sbjct: 174 TARKHYVTANNILMNLSPIFNKAIEWGLIDKNPVHGIKRHKQESRSRYVTNEEMERLMKV 233 Query: 185 FWSEGSQPR------------LAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQK 228 + + L L++ R + + + K Sbjct: 234 LVEKENSQLTEEQKQSKISETLFLFIALFTAARSGNILAMRWDEISLSEKIWCIPKTKSK 293 Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFI----NNDKQKMNATQFSIWFKAKATKAGVN- 283 G + + L D + +L + ++ +I ++ + ++++ + KAG+ Sbjct: 294 NGKQLYIGLADKLIAVLQNRKLCSKSEWILPSVKDNSKHISSSTIHRAWAKIRKKAGIPN 353 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY-TKGADRIRLGIKNS 336 + H +R+ AT + G T + G + + Y ++ Sbjct: 354 VTIHDLRRTFATWMINNGETVDTISQILGHSNTNTTKIYIIHSLAMAKIATNKV 407 >gi|159046242|ref|YP_001541914.1| integrase family protein [Dinoroseobacter shibae DFL 12] gi|157914001|gb|ABV95433.1| phage integrase [Dinoroseobacter shibae DFL 12] Length = 295 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 41/267 (15%), Positives = 81/267 (30%), Gaps = 17/267 (6%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130 L + + ++ S G T + +R+ TP Sbjct: 9 LRQRMIEDMRIRGMGDKAQKSHIRAIKDFAAFLGRSP-DTATPEDLRAYQLHMTDTGITP 67 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-WSEG 189 S+ + ++R F +E + E + ++ E++ G Sbjct: 68 STFNTRIVALRFFFGMTCGREEMKRYMQFRTEP----RKLPVVFSVEEVSDILMAAPGPG 123 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAM 247 + R A +GLR ++ C + + ++ ++ K V L G ++LL Sbjct: 124 LKYRAALSISYGAGLRAAEVCNLKIGDIDSDRMLIHVEQGKGQKDRKVMLSPGLLELLRA 183 Query: 248 TPIGKETFFI----NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301 ++ Q + F + AGV K + H +R AT +A Sbjct: 184 WWRETRPEGWLFPGKPKINPISPRQLNRAFTSAKHMAGVKKPATLHTLRHSFATHLLEAN 243 Query: 302 ATAHELMATYGWKTVDQAETYTKGADR 328 + G + YT A + Sbjct: 244 TDVRVIQVLLGHAKLTTTARYTHVATK 270 >gi|329910273|ref|ZP_08275268.1| site-specific recombinase, phage integrase family [Oxalobacteraceae bacterium IMCC9480] gi|327546222|gb|EGF31261.1| site-specific recombinase, phage integrase family [Oxalobacteraceae bacterium IMCC9480] Length = 356 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 59/338 (17%), Positives = 108/338 (31%), Gaps = 31/338 (9%) Query: 11 VTKERTRHGK-IIYYFRKGHGRRIRLPYPHESTFIP---AYMSALTGSTPKREYINSPRK 66 + K + GK Y + R+R P +TF A A + + Sbjct: 4 IEKRVSDDGKETAYRVKI----RLRGQAPETATFERLTDAKEWAKKTEADMKAGRHFGIS 59 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 K T++ L+ Y KSA + S + D + G +T I + Sbjct: 60 KRHTVEELLDRYEKSALPALKSAESVKAK---LDFWRERHGKNLLSDMTPDVIAKARDKL 116 Query: 127 KHTPSS----------AIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWT 175 TP + L ++ +AV++ ++ NP V + +R + Sbjct: 117 ASTPKQRGGGIRSAADVNRTLAALSSACGFAVKELGWLERNPMERVRKGAEAKGRVRFLS 176 Query: 176 KEDMQQFKSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGT 231 +++ F + S LA L +G R S+ + + + K G Sbjct: 177 SDELPLFLKACRDSANSHLYLAVVLALTTGGRKSEVMSLRWRQIDMKRRTAMLGDTKNGD 236 Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ----FSIWFKAKATKAGV-NKSA 286 + L + LL + + K F AG+ + Sbjct: 237 ARALPLSGEALALLQASATVRALDDDRLFPPKPRGKSEFMDLRAPFDGALKVAGITDFHW 296 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R +A+ A AG + E+ G +T+ Y+ Sbjct: 297 HDLRHTAASYLAMAGTSPLEIAKVLGHRTMAMVARYSH 334 >gi|294676507|ref|YP_003577122.1| phage integrase [Rhodobacter capsulatus SB 1003] gi|294475327|gb|ADE84715.1| phage integrase [Rhodobacter capsulatus SB 1003] Length = 409 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 50/365 (13%), Positives = 101/365 (27%), Gaps = 40/365 (10%) Query: 11 VTKERTRHGKIIYYFRKGHGRRIRLPY--PHESTFIPAYMSALTGSTPKREYINSPRKKP 68 R G ++ Y G +R + T L + E RK Sbjct: 33 CVYTTGRKGFVLIYRIAGQQKRFTIGVWPTWSVTAARDEAKRLIREIDRGEDPLDTRKAA 92 Query: 69 T---TLKWLISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHI----- 119 T+K L + + LA + +S +++ + + + IT + Sbjct: 93 RGAPTVKELAERFIEEH-LPKLAKTNASDQKSMLEKLVLPEWKNRKVADITPTDVDRLLT 151 Query: 120 ------------------RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161 R + K TP A + +R +F A+ + NP Sbjct: 152 KIAAGRARPSKKKPTQKRRKKLAPPKPTPVRANRAGEMLRKMFNLAMLWKMRTDNPAFGF 211 Query: 162 ER-PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH---- 216 R P+ + + + + E + + +G R + A Sbjct: 212 RRRPEVARDRFLSFEEIERLANALAVDEDQRAASIIRLCMLTGARLGEVRTATFDQFNLD 271 Query: 217 --LQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA--TQFSIW 272 + + Q+ + + + L + K F+ W Sbjct: 272 LAIWTKQAAYTKQRRIHRVPISHEAVALIRLRREIVPKGCPFLFPGDVPDQPVGDPKRFW 331 Query: 273 FKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRL 331 K + + H +R A++ GA+ + G + + Y D +R Sbjct: 332 PKMQKVALIPDVRIHDLRHTFASLLVSGGASLEMIGRLLGHTQIGTTQRYAHLIDAPLRA 391 Query: 332 GIKNS 336 G+ Sbjct: 392 GVNAV 396 >gi|238924762|ref|YP_002938278.1| site-specific recombinase, phage integrase family [Eubacterium rectale ATCC 33656] gi|238876437|gb|ACR76144.1| site-specific recombinase, phage integrase family [Eubacterium rectale ATCC 33656] Length = 336 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 38/312 (12%), Positives = 94/312 (30%), Gaps = 25/312 (8%) Query: 40 ESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF 99 + + + + E + + + + + + + Sbjct: 31 SIAQMKKLQEVILQTFAENEAEKAEIAN----DKFLEMFLDAKTIEGCSERTIKYYRETV 86 Query: 100 DQIIRKSGDFDYRKITTKHIRSGVESRK----HTPSSAIQFLTSMRVLFKWAVRQEYVAI 155 ++ ++ + RKITT+ IR + + + + ++ F W ++Y+ Sbjct: 87 QHLLSQT-ETSVRKITTEEIREYLSDYQKLNNCSNVTIDNVRRNISSFFSWLEEEDYILK 145 Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215 +P + + K KT + E +++ + +E + + L +G+R + + Sbjct: 146 SPMRRIHKIKTKTVVKSVISDEGIEKLRDNCNE-KRDLAIIDLLYSTGIRVGELVNLNID 204 Query: 216 HLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI------NNDKQKMNATQ 268 + I K V L + + ++ + Sbjct: 205 DIDLEGRECIVYGKGDKERRVYFDAKAKVHLKDYIDTRTDKNKALFVTLDAPHDRLKISG 264 Query: 269 FSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT---- 323 I + K + + H R+ AT + D G ++ G +D Y Sbjct: 265 VEIRLRKLGRKLSLERVHPHKFRRSMATRAIDKGMPIEQVQKILGHSQIDTTMQYAMVNQ 324 Query: 324 ---KGADRIRLG 332 K A + L Sbjct: 325 NNVKTAHQKYLA 336 >gi|75762077|ref|ZP_00741984.1| DNA integration/recombination/inversion protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228902796|ref|ZP_04066941.1| YdcL (Lambda integrase-like, N-terminal,DNA breaking-rejoining enzyme, catalytic core) [Bacillus thuringiensis IBL 4222] gi|74490430|gb|EAO53739.1| DNA integration/recombination/inversion protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228856805|gb|EEN01320.1| YdcL (Lambda integrase-like, N-terminal,DNA breaking-rejoining enzyme, catalytic core) [Bacillus thuringiensis IBL 4222] Length = 353 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 39/344 (11%), Positives = 96/344 (27%), Gaps = 41/344 (11%) Query: 11 VTKERTRHGKIIYYFRK-----GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65 + K+ R Y+ + G ++++ + + + Sbjct: 3 IYKDEQRG--TYYFVTRVRQLDGTLKQVKRRGFKTKKEAREAEAKM--------LVEKVT 52 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVE 124 T + Y +S ++ + + +I + G +IT KHI + Sbjct: 53 TSSLTFSQVADSYFDWYSQRR-KQSSIVTIRNVIYNHLITEFGKLKIEQITPKHIMNYQN 111 Query: 125 SR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 +++ + + +F ++++ + NP ++++ + + + + Sbjct: 112 KIINQYSAKHLKKIHAVLSAIFNFSIKFHGLTTNPARITGNFEKESNKRMNFWEFEEFKQ 171 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-------- 234 + + F L YSG R + + +I KT Sbjct: 172 FIAVVDELLYKAFFSTLYYSGARKGELLALTWSDINFEEKTIDINKTEFERKVTKPKTKA 231 Query: 235 -------VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF-----SIWFKAKATKAGV 282 +K L + + + S ++ + V Sbjct: 232 SNRIIMLPTHCIDLLKELHCEKSKEFPVKNDYVVFGEFRSSIAVSTLSRNYQKYLKMSDV 291 Query: 283 NK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 K H R A+ + G + + G V TY+ Sbjct: 292 KKILIHEFRHSHASYLINKGVSPLVVAQRLGHSNVSTTLNTYSH 335 >gi|325261284|ref|ZP_08128022.1| recombinase [Clostridium sp. D5] gi|324032738|gb|EGB94015.1| recombinase [Clostridium sp. D5] Length = 313 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 30/276 (10%), Positives = 83/276 (30%), Gaps = 30/276 (10%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSM 140 +L V + ++++ D +++ Y + I + +P S + S+ Sbjct: 23 RNLGVKTLYAYKNDVDNMVKWIDMRGYSDLDADTIMMYFLYLQNEIELSPRSIRRKYVSI 82 Query: 141 RVLFKWAVRQEYVAINPCL-SVERPKRKTEGIRPWTK-------------EDMQQFKSFW 186 R + ++ + S + + + +K + Sbjct: 83 RQYCDFLNKEFDMNEIFFKFSSRKFQIPKNLPKVLSKAEIQSLISSVSAEFQSVSSEYHR 142 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQH---------LQNNIFSIKTQKTGTIITVEL 237 + E L GLR + V+ + + + I + Sbjct: 143 RLCIRNMCIIELLFCLGLRIGEIAAMDVEDYNREDCSVLIHGKGKKERMLFISSPIVCQK 202 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSAT 295 + ++ F+N +++ + + + + + H +R AT Sbjct: 203 LNNWILTRQEMSPADSAMFVNKSGGRLSIFSIENIYYKYRELSQINPHSTPHYLRHSFAT 262 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330 + GA ++ G ++ + YT+ + +R + Sbjct: 263 QLLNNGANIRDVQELMGHNSIVTTQIYTEVSLNRKK 298 >gi|298373089|ref|ZP_06983079.1| tyrosine recombinase XerD [Bacteroidetes oral taxon 274 str. F0058] gi|298275993|gb|EFI17544.1| tyrosine recombinase XerD [Bacteroidetes oral taxon 274 str. F0058] Length = 294 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 44/281 (15%), Positives = 87/281 (30%), Gaps = 33/281 (11%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVESR--- 126 + EY + + + + + S+ +Q D K IR + Sbjct: 2 LEEYLRYLQYEKNYSSRTVSSYRKDINQFTAYYSRINNSTDISKAEIDDIRLWIAELISV 61 Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----- 180 K T S + L+SM+ +K+ +++ + +P V PK +T++D+ Sbjct: 62 NKITSRSVCRKLSSMKSFYKFLLQKNIIDSSPV-DVVAPKIIKSLPVFFTEKDINLLGTD 120 Query: 181 -QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239 E ++ L E +G+R + + + +IK E Sbjct: 121 EILPDDSFETARNALMIEIFYQTGIRRMELIELKISDIDFERKTIKVLG---KRRKERFV 177 Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA--------------GVNKS 285 F + L + + + + KA S Sbjct: 178 PFGEALENQIKHYLSIRQKRITTDNDYLFVTKHGRQLYDKAVYNIVTRELGSITTKTKHS 237 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 H +R AT D GA + + G ++ + YT + Sbjct: 238 PHTLRHTFATTMLDNGADLNSIKELLGHSSLAATQVYTHTS 278 >gi|294625642|ref|ZP_06704265.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294666817|ref|ZP_06732050.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292600065|gb|EFF44179.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292603401|gb|EFF46819.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 305 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 38/286 (13%), Positives = 88/286 (30%), Gaps = 29/286 (10%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRK-------------ITTKHIR 120 + E+ ++ ++ ++ ++ + + + H+R Sbjct: 4 VDEFLTYLQVERQVSAHTLDAYRRDLAALVVWAAEQTTDDGVQDAAVPAETAQFDSAHLR 63 Query: 121 SGVESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 V + SA + L++ R + W ++ ++ +P ++ PK + + + Sbjct: 64 QFVAAEHRRGLSAKSLQRRLSACRSYYAWLLKHGRISASPAAALRAPKAPRKLPQVLDAD 123 Query: 178 DMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTII 233 + + G + R E SGLR S+ C + L + + K Sbjct: 124 EAVRLVEVPTDAPLGLRDRALLEVFYSSGLRLSELCALRWRDLDLDSGLVMVLGKGSKQR 183 Query: 234 TVELPDGFMKLLAMTPIG-----KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 V + + L F ++ I K A + G+ + Sbjct: 184 LVPVGSHAIAALREWRRDSGASADSHVFPGRAGGAISQRAVQIRIKQLAVRQGMFKDVHP 243 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R A+ ++ + G + + YT D L Sbjct: 244 HMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTH-LDFQHLA 288 >gi|222147672|ref|YP_002548629.1| phage-related integrase [Agrobacterium vitis S4] gi|221734660|gb|ACM35623.1| phage-related integrase [Agrobacterium vitis S4] Length = 349 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 56/309 (18%), Positives = 107/309 (34%), Gaps = 17/309 (5%) Query: 12 TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 K++ G + YF G P + F+ AY +A++ + TL Sbjct: 17 VKKKLADGTPVTYFYAWKGGPPLPGKPGDPEFMAAYNAAISRKVEP---------QAGTL 67 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVESR 126 + +++ ++ S+ W LA ++ + I ++ G F + + + E Sbjct: 68 QSILNAFQVSSDWDDLAPRTKSDYVKLIKVIEKEFGTFPISGLKNRRAKSIFLSWRDERA 127 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + + A + + WA+ + + NPC R + + WT +D F + Sbjct: 128 RASRRQADYGWQVLARILSWALGRGLIEANPCEKGGRLYQGSRAEFVWTGDDEANFLAS- 186 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246 LA L++G R D +K KTG + + + +L Sbjct: 187 -APPHLHLALILALWTGQRQGDLLALTWPQYDGERIRLKQGKTGARVVIPVGGPLKAMLD 245 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSATISADAGATAH 305 + D + FS ++ AG V + + +R + T A AG T Sbjct: 246 PIRQKVGHVLLTLDGTPWTSGGFSSSWRKACAAAGVVGVTFNDLRGTAVTRLALAGCTEA 305 Query: 306 ELMATYGWK 314 E+ G Sbjct: 306 EIATISGHS 314 >gi|260907246|ref|ZP_05915568.1| phage integrase family protein [Brevibacterium linens BL2] Length = 319 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 41/304 (13%), Positives = 90/304 (29%), Gaps = 42/304 (13%) Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD------------YRKIT 115 PTT+ ++S Y ++ ++ ++ + + I Sbjct: 4 PTTIAEVVSGYADHLRSRDVSAHTSRAYVADVSDFFDHTAHAPGAGDKSRAAELQVSDID 63 Query: 116 TKHIRSGV---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 +RS + + S+ + + +++ F + V Q ++ NP + PK+ + Sbjct: 64 LNDLRSWLITLDDAGAAKSTVARKIAAVKSFFAYCVNQHGLSNNPAARLRTPKKDSRLPT 123 Query: 173 PWTKEDMQQFKSFWS---------------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217 + S + + E L + +R S+ + Sbjct: 124 VLKPQQAADLVSRQRTVHTEADNSDPIEATKWVRDAAILEMLYATAVRVSELTGLNRGDV 183 Query: 218 QNNI-FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF---------FINNDKQKMNAT 267 + K V L ++TF F+ ++ A Sbjct: 184 DHQRSMITVLGKGNKERRVPYGKPAQTALQKWLSLRDTFASESSGDALFLGVRGGRIGAR 243 Query: 268 QFSIWFKAKATK--AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 Q + + HG+R +AT D GA ++ G T+ + YT Sbjct: 244 QVRELVHRYGAADPSAPDIGPHGLRHSAATHMLDGGADLRQIQELLGHSTMSSTQIYTHV 303 Query: 326 ADRI 329 + + Sbjct: 304 SMQR 307 >gi|322517694|ref|ZP_08070557.1| phage integrase family site-specific recombinase [Streptococcus vestibularis ATCC 49124] gi|322123682|gb|EFX95274.1| phage integrase family site-specific recombinase [Streptococcus vestibularis ATCC 49124] Length = 384 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 56/366 (15%), Positives = 107/366 (29%), Gaps = 55/366 (15%) Query: 11 VTKERTRHGKIIYYF-------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63 + K +T+ G I+YY G +R Y + L Sbjct: 3 IHKYKTKKG-ILYYVSFYIGLDAYGKKKRHLKRGFKTKKEAKLYEARLEAGVVAPTVSTD 61 Query: 64 PRKKPTTLKWLISEYRKSA---HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 T K L E+ + + + ++ + I+ GD +I+ + Sbjct: 62 KPNPKVTYKELYQEWFNAYVGTVEETTSSQTKNIYRI---HILPIFGDKFIDQISPLDCQ 118 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-IRPWTKEDM 179 + + T + Q + +F +A+ Y+ NP +V PK K W+ E++ Sbjct: 119 NFITQNSQTFKNIKQIKSYTSKIFDFAINMNYIDRNPMKNVIMPKIKKTRSDNFWSLEEL 178 Query: 180 QQFKSFWSEGSQPRLAFEFLL--YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----- 232 F E + F L +SGLR + + + + K+ Sbjct: 179 HHFLDIVKETEPFKHFALFRLLAFSGLRKGELYALKWADINFDSNLLNIDKSLGRIDGKA 238 Query: 233 -----------ITVELPDGFMKLLAMTP--------------------IGKETFFINNDK 261 T+ L D + ++ N+ Sbjct: 239 IEKSTKNESSVRTIYLDDETIDIIKQWRNFYLKEQSQLPLTKLNISNEYMFSYISSNDKI 298 Query: 262 QKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA- 319 + ++A + K + S HG R AT+ ++ G G + Sbjct: 299 EPLHADYINNVLNRIIKKHKLKPISPHGFRHTHATLMSEIGIDPSNTSKRLGHASSQMTL 358 Query: 320 ETYTKG 325 + YT Sbjct: 359 DVYTHT 364 >gi|239787464|emb|CAX83935.1| Tyrosine recombinase XerC subunit [uncultured bacterium] Length = 321 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 47/289 (16%), Positives = 88/289 (30%), Gaps = 39/289 (13%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD--------YRKITTKHIRSGV-- 123 +R+ L+ N+ ++ + R R++ + +R+ + Sbjct: 8 AEAFRRHLAVERRLSPNTVSAYLRDLELFGRYWCQRHGGGLTEEQLRQMRPEDLRAFMGM 67 Query: 124 -ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + S+ + + S+R F++ R+ NP V PK+ R T+ED + Sbjct: 68 GQREGAAKSTLQRRMASVRAWFRYLEREGLAENNPAALVASPKQAQRLPRAPTEEDTARL 127 Query: 183 K--------------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-Q 227 + E L SGLR + C L ++ Sbjct: 128 IESLPPPGPQSPLTGWARVRLLRDGAILELLYGSGLRIGELCGLDRLDLNLRQAEVRVLG 187 Query: 228 KTGTIITVELPDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKA 277 K G V L ++ L P F ++N + Sbjct: 188 KGGKERLVPLGSMAIQALERYLEARKAEAPPPDHLGPVFTGRQGGRLNPREVQRLVVKLR 247 Query: 278 TKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + G+ + H +R AT AGA + G ++ + YT Sbjct: 248 RRLGLPEKVTPHALRHAFATHLLQAGADLRSIQEMLGHASLTTTQRYTH 296 >gi|159184306|ref|NP_353464.2| phage-related integrase [Agrobacterium tumefaciens str. C58] gi|159139630|gb|AAK86249.2| phage-related integrase [Agrobacterium tumefaciens str. C58] Length = 342 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 55/339 (16%), Positives = 118/339 (34%), Gaps = 25/339 (7%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 G + YY G R+ +P + F+ +Y A+ + + Sbjct: 12 VKAKGNVYYYA-WRGGPRLD-GHPGTAAFMASYNEAIANRMEPESGR---------FRSI 60 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRKHT 129 I+ Y+ + + LA +++ + + D+I G+ + IR T Sbjct: 61 ITHYKAT-EFKKLADSTKRVWSPWIDRISEHFGNLSIAQFNRTDKIRPRIRQWRGQYSDT 119 Query: 130 PSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 P +A + + + V ++ NP ++ WT D+ Q K+ S+ Sbjct: 120 PRAADTGMQVLSRILSHGVDPMGKLSANPAEGIKHLYSSDRSEIIWTDADIAQVKAECSD 179 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM--KLLA 246 + + ++GLR SD + H+ + I T K+ +P ++L Sbjct: 180 E--VKWVIDLAAHTGLRVSDLLKLSWSHVGPDAIIISTGKSRHKREAIIPRYDALNEILE 237 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGAT 303 P ++ K+ + + F KA + + H +R +AT +AG + Sbjct: 238 RIPKRSPVILTSSKKKPWKPSGLNTMFWRAKEKAKMLERDLHFHDLRGTAATKFYNAGLS 297 Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342 + W+ + + R +++ ++S Sbjct: 298 VRVIAEIMAWEEETVGKIIRRYVGRNSATLEHINMLNSK 336 >gi|56696516|ref|YP_166873.1| tyrosine recombinase XerD [Ruegeria pomeroyi DSS-3] gi|56678253|gb|AAV94919.1| tyrosine recombinase XerD [Ruegeria pomeroyi DSS-3] Length = 319 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 41/290 (14%), Positives = 85/290 (29%), Gaps = 33/290 (11%) Query: 73 WLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSG---VESR 126 IS + + A N+ +++ + + +++ Sbjct: 10 QWISTFLDAQAAELGAANNTLLAYGRDLKDFTDWLERRGATLNGAERDTVEAYLVDCDAQ 69 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 ++ + L++++ L+++A + + A NP + ++ P R + ++ + Sbjct: 70 GLARATRARRLSAIKQLYRFAFDEGWRADNPAIQIKGPGRLKSLPKTLEVIEVDRLLEAA 129 Query: 187 S-------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238 + + E L +G+R S+ + + + K G V L Sbjct: 130 RQTGRTSADRLRNTCLMELLYATGMRVSELVSLPATAARGDPRMLLVRGKGGKERMVPLS 189 Query: 239 DGFMKLLAMT----------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 LA F + +F + K A GV Sbjct: 190 PPARAALAAWLTVRDAAEEDGARRGIARSPHLFPSRGKSGHLTRHRFYLLIKELAVAGGV 249 Query: 283 ---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + H +R AT GA + G V E YT D Sbjct: 250 SPDTVTPHTLRHAFATHLLANGADLRTIQTLLGHADVSTTEIYTHVLDAR 299 >gi|304394166|ref|ZP_07376089.1| tyrosine recombinase XerD [Ahrensia sp. R2A130] gi|303293606|gb|EFL87983.1| tyrosine recombinase XerD [Ahrensia sp. R2A130] Length = 308 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 43/299 (14%), Positives = 92/299 (30%), Gaps = 33/299 (11%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHTP- 130 I + + A N+ + + +H+R + + Sbjct: 7 IESFLEMMSAERGAAANTLSGYGRDLADYSAHCRNTRTTVMDAGAEHVRGWMARLADSGC 66 Query: 131 --SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 S+ + L+++R L+++ +P +V+RPK + ++ D+ + + Sbjct: 67 AASTQARKLSAVRQLYRFLFSDGLREDDPTATVDRPKTGRPLPKVISEIDVDRLLGAAQD 126 Query: 189 GSQP-------------RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIIT 234 ++ E L SGLR S+ + T K Sbjct: 127 AARKGETSAARLRAARTLALLELLYASGLRVSELVALRSATITPQTRFVNVTGKGAKERL 186 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWFKAKATKAGVN-- 283 V + ++ + + F+ KA AT AG+ Sbjct: 187 VPISAAALEAVEAYRQAARDHKQAPSAWLFPSRSAAGHITRQHFARDLKALATSAGLPAS 246 Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSRRIS 340 S H +R A+ GA + G + + YT +R+R ++ + ++ Sbjct: 247 KLSPHVLRHAFASHLLQNGADLRAVQQLLGHADIATTQIYTHVLEERLRDLVETAHPLA 305 >gi|239948273|ref|ZP_04700026.1| integrase [Rickettsia endosymbiont of Ixodes scapularis] gi|239922549|gb|EER22573.1| integrase [Rickettsia endosymbiont of Ixodes scapularis] Length = 395 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 41/314 (13%), Positives = 97/314 (30%), Gaps = 23/314 (7%) Query: 32 RIRLPYPHESTFIPAYMSALTGSTPKR--------------EYINSPRKKPTTLKWLISE 77 RI++ + + + A A + E + P + T K L + Sbjct: 58 RIKIGRFPDLSIVDARAKAAELKSQIARGINPIEESSKVSNELNDLPISEELTFKELFDK 117 Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQF 136 Y + ++ + ++ + I I+ + K SA +F Sbjct: 118 YINNYAKHNIKR--WRDCIATMNRQAKHFYPMKISAIQKADIQQTFHNLTKFGKYSANKF 175 Query: 137 LTSMRVLFKWAVRQEYVAINPCLS-VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195 L + +F A+ E + NP + ++ + + + + Sbjct: 176 LEMLSAIFNKAIEWELLGKNPVTGLKKHKEQSRDRYITKEEAPQFFQALKEEQNQLMKDF 235 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255 LY+G R S+ +++ + T + + + KE+ Sbjct: 236 ILISLYTGARKSNVLSMRWENVSFGNKTWYIADTKNGDPQTVVLIEEAIKILEARKKESE 295 Query: 256 FINNDKQKMNATQF----SIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMAT 310 + +++ +K T+AG+ + H +R+ + A GA+ + + Sbjct: 296 SEWVFPSEASSSGHLQEPKKAWKRICTRAGLKDLRLHDLRRTCGSWMAINGASQYVIGKA 355 Query: 311 YGWKTVDQAETYTK 324 K+ Y + Sbjct: 356 LNHKSPTSTAIYAR 369 >gi|291534339|emb|CBL07451.1| Site-specific recombinase XerD [Roseburia intestinalis M50/1] Length = 317 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 34/269 (12%), Positives = 85/269 (31%), Gaps = 18/269 (6%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---H 128 K + R A +L + + S +R G + +T + S + +++ Sbjct: 3 KDIFESIRNEAEKRNLRERTIQLYCSDVSYFLRWIG-KNVSDLTLEDAESFLTAKRLEGR 61 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +P + + ++++ L+K ++ + +++++ Sbjct: 62 SPETHNHYRSAIKFLYKKVLKTVWDDDTVPAMKRE----RNLPAVLSRDEINAIIDAT-P 116 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLA 246 + + + SGLR S+ + N ++ K L + LL Sbjct: 117 NLKHKAIIATMYSSGLRVSEVVHLHYDDISRTNMTIHVRETKGRIDRYTILSQKNLDLLT 176 Query: 247 MTPIGKETFFINNDKQKMNA-----TQFSIWFKAKATKAGV--NKSAHGVRKFSATISAD 299 + + +FK A AG+ + S+H R A+ + Sbjct: 177 EYWYKCGRPKDILFPSSWSGGYLDIASVNQFFKKSAKLAGINRHVSSHACRHSFASHLFE 236 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADR 328 +G + + G + Y +++ Sbjct: 237 SGTDIKYIQSLLGHVDPRSTDVYLHVSNK 265 >gi|256841220|ref|ZP_05546727.1| tyrosine recombinase XerC [Parabacteroides sp. D13] gi|256737063|gb|EEU50390.1| tyrosine recombinase XerC [Parabacteroides sp. D13] Length = 327 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 43/264 (16%), Positives = 87/264 (32%), Gaps = 14/264 (5%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 LI + + + S + S + IRK G + R ITT +RS + + T Sbjct: 50 SELIDIFLSAKRVEGCSDKSMHYYRSTLNNAIRKIG-KNIRHITTDDLRSYLNDYQLTSG 108 Query: 132 ----SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + + F W ++Y+ +P + + K ++ E ++Q + Sbjct: 109 ATKVTVDNIRRILSSFFSWLEDEDYIVKSPVRRIHKVKVGKTVKETYSDEALEQMRDHC- 167 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLA 246 EG + + L +G+R + + + I T K V L Sbjct: 168 EGIRDLALIDLLASTGMRVGELVKLNRNDIDFENRECIVTGKGDKQRRVYFDARTKIHLQ 227 Query: 247 MTPIGKETFFINND------KQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299 + ++ + I + + + K H R+ AT++ D Sbjct: 228 RYFAERIDDNPALFVSLLAPYDRLQISGVEIRLRRLGRELNIPKVHPHKFRRTLATMAID 287 Query: 300 AGATAHELMATYGWKTVDQAETYT 323 G ++ G +++D Y Sbjct: 288 KGMPIEQVQHLLGHQSLDTTLQYA 311 >gi|153805908|ref|ZP_01958576.1| hypothetical protein BACCAC_00148 [Bacteroides caccae ATCC 43185] gi|149130585|gb|EDM21791.1| hypothetical protein BACCAC_00148 [Bacteroides caccae ATCC 43185] Length = 328 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 36/262 (13%), Positives = 82/262 (31%), Gaps = 14/262 (5%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH----T 129 L+ + + + NS + S + + K G + ITT +R + + + + Sbjct: 53 LVENFISAKKVEGCSPNSIAYYRSTINNALIKLG-KEVIHITTDDLRHYLNTYQSESGAS 111 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + + F W + Y+ +P + + K +T E ++ + Sbjct: 112 KVTVDNIRRILSSFFSWLEEENYIVKSPVRRIHKVKVGKTVKETYTDESLELMRDHC-SN 170 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLAMT 248 + + L +G+R + + + + I T K V L Sbjct: 171 PRDLALIDLLASTGMRVGELVKLNRSDIDYHNRECIVTGKGDKQRKVYFDARTKIHLQKY 230 Query: 249 PIGKETFFINND------KQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301 + ++ + I + + K H R+ AT++ D G Sbjct: 231 INSRTDNNEALFVSLLAPYDRLQISGVEIRLRQMGKDLNIPKVHPHKFRRTLATMAIDKG 290 Query: 302 ATAHELMATYGWKTVDQAETYT 323 ++ G +++D Y Sbjct: 291 MPIEQVQHLLGHQSLDTTLQYA 312 >gi|312621006|ref|YP_003993734.1| site-specific recombinase, phage integrase family [Photobacterium damselae subsp. damselae] gi|311872727|emb|CBX86821.1| site-specific recombinase, phage integrase family [Photobacterium damselae subsp. damselae] Length = 499 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 48/319 (15%), Positives = 99/319 (31%), Gaps = 13/319 (4%) Query: 18 HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP--RKKPTTLKWLI 75 G+ +Y R +++ ++ + + L E++ + + TL + Sbjct: 35 KGRKVYQVRTRTDNKVKTRTLGDTATLALKEARLMAKKQVNEWLEAQSDISQSPTLGTFM 94 Query: 76 SEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRK-HTPSSA 133 K + ++++ Y ++ GD+ + + + E+ T A Sbjct: 95 QCEWKEQVFNRWKPRTQVTASHYMTKWLLPSLGDYALVNLGYREVNEWFENMSLTTKGGA 154 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--- 190 + L ++ +F A+R Y +PC + R +K E + S Sbjct: 155 NRALDVLKSVFVLAMRLGYCHHDPCRLINRNPKKRFNRFLSRSELKNLGEILARLESESA 214 Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247 Q LL +G R S+ ++ N+ + KTG D L Sbjct: 215 SYQQQANIVRMLLLTGCRVSEILTLQWTMIKPNLIDLPDSKTGARTVYLSEDANAILRLQ 274 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHE 306 + F + S +++ A V H +R A+ +A G + Sbjct: 275 PRMTPWVFPAPRTDKPYT--SISAFWQKVRNLANVPEVRIHDLRHTFASYAALQGNSVPM 332 Query: 307 LMATYGWKTVDQAETYTKG 325 + G Y Sbjct: 333 IAKMLGHSRFSMTLRYAHV 351 >gi|296132971|ref|YP_003640218.1| integrase family protein [Thermincola sp. JR] gi|296031549|gb|ADG82317.1| integrase family protein [Thermincola potens JR] Length = 282 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 33/264 (12%), Positives = 82/264 (31%), Gaps = 18/264 (6%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES----RKH 128 L+ + + + + + + + + G + +R + RK Sbjct: 3 ELLRKMQMNLVIAGFSPKTHDDYLRHVKHFQKHFG-KPLEHMGYDEVREFLHHAITQRKL 61 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + S Q +++R ++ + ++ V R KR+ + ++++ ++ Sbjct: 62 SCSYVNQTYSAIRFFYETVLGWDW----NMKQVPRVKREKTLPAVLSIDEVKA-IFNVTK 116 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVELPDGFMKLLA 246 + + +GLR + R + + + I K K L + +L Sbjct: 117 NIKHKAILMTTYAAGLRVGEVTRLKISDIDSKNMQILIKLGKGKKARYSLLSPANLSILR 176 Query: 247 MTPIGKETFFINND----KQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300 + + ++ F AG+ + S H +R AT +A Sbjct: 177 QYWRQYRPSYWLFPGKPSDKPISVRTVQQIFYDAKVLAGIQKDVSIHTLRHCFATHLLEA 236 Query: 301 GATAHELMATYGWKTVDQAETYTK 324 G + G ++ Y Sbjct: 237 GTDILHIQQLLGHTSIHTTCIYLH 260 >gi|315186399|gb|EFU20159.1| integrase family protein [Spirochaeta thermophila DSM 6578] Length = 299 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 42/285 (14%), Positives = 94/285 (32%), Gaps = 25/285 (8%) Query: 72 KWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKH 128 + L+ YR + + ++ ++ + ++ + + + Sbjct: 6 ERLLRRYRTHLVAELGRSRLTEETYLPLCERFCAWLECRGLEVETVSRRTCEEFIVDERG 65 Query: 129 TP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + + ++++R F++ V + NP ++ P+ R +E+++ Sbjct: 66 EGKETRTIAKEMSALRSFFRFLVLEGVRPDNPLEEMDAPRISRTLPRVLEEEEVEILLEA 125 Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------ 229 EG + R E L GLR S++C +Q + + +K + Sbjct: 126 VDTTPPEGMRDRCLLEVLYSCGLRVSEACGLDLQDIFLSEGFVKVRGKGEKERLVPFGKE 185 Query: 230 --GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAH 287 + + ++ F+N ++++ I K +GV+ H Sbjct: 186 AGHWMRRYLSEARPVLAARRPGSREQAVFLNRWGRRLSRKGAWIRLKRLVAASGVDAKLH 245 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 R AT GA E+ G + + YT D RL Sbjct: 246 TFRHTCATHLLHGGANLREVQEFLGHADISTTQIYTH-VDARRLA 289 >gi|282848850|ref|ZP_06258240.1| site-specific recombinase, phage integrase family [Veillonella parvula ATCC 17745] gi|282581355|gb|EFB86748.1| site-specific recombinase, phage integrase family [Veillonella parvula ATCC 17745] Length = 350 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 35/346 (10%), Positives = 101/346 (29%), Gaps = 24/346 (6%) Query: 13 KERTRHGKIIYYFRKG-HGRRIRLPYPHESTFIPAY-MSALTGSTPKREYINSPRKKPTT 70 +++ + +II ++ G ++ Y + K T Sbjct: 8 RKKDKGYQIIVSYKDGIKWKQKSKQGFSTQREAKLYGQKIIDELRKTVTNPLDDSLKNIT 67 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 L Y + ++ N+++ ++ + R I+ + I + + Sbjct: 68 FIELCELYMREKI--GISENTKLVYQYIIKNL-SVLHQKRVRDISHQMIFKTLSDIEFAN 124 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINP--CLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + +T ++ +F +A++ + + + + + +T ++M + + Sbjct: 125 RTKNMHITFLKSVFNFAIKPYRIIRSNPVADIKRFTTKTYKSLTTFTIDEMDLLLKTYID 184 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------------ITV 235 + Y+G R + + +I+ K + Sbjct: 185 NKKLYTLLCIARYTGARYGEILALTWLDIDLAYNTIRINKQWSRTSNNTFGVKEPKTRNS 244 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSAT 295 +L+ + ++ +N + + NK+ H R AT Sbjct: 245 IRTLPIPPILSNILLEYKSISNTERLFNINTSS-TGNVNYAIRTIVPNKTIHAFRHTYAT 303 Query: 296 ISADAGATAHELMATYGWKTVDQAE-TYTKGADR-IRLGIKNSRRI 339 G + + G ++ Y +D + ++ +I Sbjct: 304 TLLANGVDIKTVASLLG-DNINTVMNVYVHYSDEMRKNAAQDVSKI 348 >gi|152985240|ref|YP_001350479.1| phage integrase family site specific recombinase [Pseudomonas aeruginosa PA7] gi|150960398|gb|ABR82423.1| site-specific recombinase, phage integrase family [Pseudomonas aeruginosa PA7] Length = 404 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 49/374 (13%), Positives = 100/374 (26%), Gaps = 52/374 (13%) Query: 10 FVTKERTRHGKIIYYFRKGHGRRIRLPYPH-------ESTFIPAYMSALTGSTPKREYIN 62 + T +G Y R G++ L + A P + Sbjct: 29 GLFVRVTANGHKAYVLRWARGKKRTLGRVGVLTLDQARKEALQDLAEAREHGEPLAVALG 88 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI--- 119 TL+ I ++ L S+ + + + +IT + + Sbjct: 89 RKNSTTPTLRDFIDDHYSPWMDTHLKSASKT--LNLINVGFAEIMSKRLTEITQRDLETL 146 Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 R ++ +T S+A + + S+R AV ++ +P +++ K G + D Sbjct: 147 RISWQAAGNTDSTANRKMASLRGALSRAVEWGFLDDHPMARLKQIKTDRAGRVRYLLPDE 206 Query: 180 QQFKSFWSEG-------------------SQPRLAFEFL--------------LYSGLRC 206 ++ E + RLA L +G+R Sbjct: 207 EKRLRQAMEDRQESIRTDRDSANQWRAERKKERLADLREVLFVDHLKPLVLLSLNTGMRR 266 Query: 207 SDSCRAGVQHLQNNIFSIKTQ----KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262 + + + + K+G + L ++ L Sbjct: 267 GEVFNLTWADIDLTNKLVTVEGEGAKSGQTRHIPLNKEALETLKGWRKQHPRNTGYVFPG 326 Query: 263 KMNAT--QFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 K ++ A V H +R A+ AG + + G + Sbjct: 327 KDGERLDNVKKSWEGLLKLANVTGFRWHDLRHTFASKLVMAGVPLNTVRELLGHSDITMT 386 Query: 320 ETYTKGADRIRLGI 333 Y A + Sbjct: 387 LRYAHLAPDSKAAA 400 >gi|324114504|gb|EGC08473.1| bacteriophage lambda integrase domain-containing protein [Escherichia fergusonii B253] Length = 357 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 62/345 (17%), Positives = 110/345 (31%), Gaps = 23/345 (6%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63 LPP + R+ Y G+ L A + + + R Sbjct: 9 RRDLPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAVSEAIQANIELLSENRRESLI 65 Query: 64 PR---KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 R TL + Y + + + + S I RK D I+TK + Sbjct: 66 DRIKGADVITLHAWLDRYETILSERGIRPKTLLDYASKIRAIRRKLPDKPLADISTKEVA 125 Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + + + +SA +++ +F+ A+ + +VA NP + K + R E Sbjct: 126 AMLNTYVAEGKAASAKLIRSTLVDVFREAIAEGHVATNPVTATRTAKSEVRRSRLTANEY 185 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------ 232 ++ + + RLA + + +G R D CR + +N I+ KTG Sbjct: 186 VEIYHAAEPLPIWLRLAMDLAVVTGQRVGDLCRMKWSDINDNHLHIEQGKTGAKLAIPLT 245 Query: 233 -ITVELPDGFMKLLAMTPI--GKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NK 284 L L G ET + + ++ S +F +G+ Sbjct: 246 LRIDALNISLADTLQKCRKASGSETIIASTHHEPLSPKTVSKYFTKARNASGLSFDGDPP 305 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + H +R SA G K+ A Y R Sbjct: 306 TFHELRSLSA-RLYRNQIGDKFAQRLLGHKSDSMAARYRDSRGRE 349 >gi|9634144|ref|NP_037686.1| integrase [Enterobacteria phage HK022] gi|138560|sp|P16407|VINT_BPHK0 RecName: Full=Integrase gi|6863136|gb|AAF30377.1|AF069308_25 integrase [Enterobacteria phage HK022] gi|15760|emb|CAA36221.1| unnamed protein product [Enterobacteria phage HK022] gi|16209083|gb|AAL09856.1| integrase [CRIM helper plasmid pAH69] gi|16209095|gb|AAL09864.1| integrase [CRIM helper plasmid pAH83] Length = 357 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 59/345 (17%), Positives = 109/345 (31%), Gaps = 23/345 (6%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMS---ALTGSTPKREY 60 LPP + R+ Y G+ L A + L+G+ + Sbjct: 9 RRDLPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELLSGNRRESLI 65 Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 TL + Y + + + + S I RK D I+TK + Sbjct: 66 DRIKGADAITLHAWLDRYETILSERGIRPKTLLDYASKIRAIRRKLPDKPLADISTKEVA 125 Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + + + +SA +++ +F+ A+ + +VA NP + K + R E Sbjct: 126 AMLNTYVAEGKSASAKLIRSTLVDVFREAIAEGHVATNPVTATRTAKSEVRRSRLTANEY 185 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 + + + RLA + + +G R D CR + +N I+ KTG + + L Sbjct: 186 VAIYHAAEPLPIWLRLAMDLAVVTGQRVGDLCRMKWSDINDNHLHIEQSKTGAKLAIPLT 245 Query: 239 DGFMKLLAMTPIGKETFFI---------NNDKQKMNATQFSIWFKAKATKAGV-----NK 284 L + + ++ S +F +G+ Sbjct: 246 LTIDALNISLADTLQQCREASSSETIIASKHHDPLSPKTVSKYFTKARNASGLSFDGNPP 305 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + H +R SA G K+ A Y R Sbjct: 306 TFHELRSLSA-RLYRNQIGDKFAQRLLGHKSDSMAARYRDSRGRE 349 >gi|21241407|ref|NP_640989.1| site-specific tyrosine recombinase XerC [Xanthomonas axonopodis pv. citri str. 306] gi|34222918|sp|Q8PPP9|XERC_XANAC RecName: Full=Tyrosine recombinase xerC gi|21106742|gb|AAM35525.1| site-specific recombinase [Xanthomonas axonopodis pv. citri str. 306] Length = 305 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 38/286 (13%), Positives = 89/286 (31%), Gaps = 29/286 (10%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRK-------------ITTKHIR 120 + E+ ++ ++ ++ ++ + + + H+R Sbjct: 4 VDEFLTYLQVERQVSAHTLDAYRRDLAALVVWASEQKTDDGVQDAAVPAETAQFDSAHLR 63 Query: 121 SGVESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 V + SA + L++ R + W +++ ++ +P ++ PK + + + Sbjct: 64 QFVAAEHRRGLSAKSLQRRLSACRSYYAWLLKRGRISASPAAALRAPKAPRKLPQVLDAD 123 Query: 178 DMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTII 233 + + G + R E SGLR S+ C + L + + K Sbjct: 124 EAVRLVEVPTDAPLGLRDRALLEVFYSSGLRLSELCALRWRDLDLDSGLVMVLGKGSKQR 183 Query: 234 TVELPDGFMKLLAMTPIG-----KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 V + + L F ++ I K A + G+ + Sbjct: 184 LVPVGSHAIAALREWRRDSGASADSHVFPGRAGGAISQRAVQIRIKQLAVRQGMFKDVHP 243 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R A+ ++ + G + + YT D L Sbjct: 244 HMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTH-LDFQHLA 288 >gi|294849556|ref|ZP_06790298.1| phage integrase [Staphylococcus aureus A9754] gi|294823693|gb|EFG40120.1| phage integrase [Staphylococcus aureus A9754] Length = 353 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 47/337 (13%), Positives = 104/337 (30%), Gaps = 26/337 (7%) Query: 13 KERTR--HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP--RKKP 68 + +TR GK Y K G+R R A + K + S Sbjct: 8 RMKTRCYDGKKWQYEFKYEGKRYRKKGFRTK------REANSAGLDKLNELRSGFNIDNY 61 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVES-- 125 TL+ + K+ + N+ + + I + G + KI + + + Sbjct: 62 ITLEEYFENWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDYS 121 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER----PKRKTEGIRPWTKEDMQQ 181 ++H + + ++R A+ + NP V P + + E Sbjct: 122 KEHAKETIRKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEIL 181 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-------KTGTIIT 234 + ++ LA ++ +G R S + ++H+ +I I Sbjct: 182 KDHVRKKRTRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTDTSPRYISIA 241 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293 M +++ I + + +N + K+ ++ ++H +R Sbjct: 242 KSDMKHIMDVISTFAISYDGYIFKEAGSIINLHAINNALKSACRVNNISIITSHALRHTH 301 Query: 294 ATISADAGATAHELMATYGWKTVD-QAETYTKGADRI 329 + G + H + G K + Y+ + Sbjct: 302 CSYLLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEK 338 >gi|254437403|ref|ZP_05050897.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 307] gi|198252849|gb|EDY77163.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 307] Length = 372 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 47/320 (14%), Positives = 106/320 (33%), Gaps = 16/320 (5%) Query: 9 PFVTKERTRHGKIIYYFRKGHG--RRIRLPYPHESTFIPAYMSALT-GSTPKREYINSPR 65 + + K Y+ + G +RI + + A +AL R + + Sbjct: 38 KGLVLFVGKRSKTWYFQKDVGGQTKRILIGRFPIISAQAARQTALGFALEMGRGAGKAAQ 97 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 TL+ + Y + ++I + ++ +I+ + ++ Sbjct: 98 IGAPTLEAAMEGYLARPKLR--SETNKIGMRAQLSLHLKDWMRLPLDEISKGMMVRRHQA 155 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 +PS+A L S R ++ A R +A P +++E + K +G R + Sbjct: 156 MSGSPSAANHVLRSFRAIYNHARRTCDLAECPTMAIEWFEDKPDG-RIIENLRHWRKTID 214 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 R+ +E LL++GLR ++ + + + K G + + ++L Sbjct: 215 DLPNPIHRVFYELLLFTGLRKTEVFTLKWDQIHEDRIHLPMTKNGRSFDLPILQLHHEIL 274 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAH 305 A + + + + + H R+ AT++ +AG Sbjct: 275 APLRPLSRDWVF------PSPKSETGHITRPER---LKYNPHMHRRTFATVAMEAGVLEE 325 Query: 306 ELMATYGWKTVDQA-ETYTK 324 + + + Y K Sbjct: 326 IVGRLLNHTPLSITGQRYVK 345 >gi|319641592|ref|ZP_07996279.1| hypothetical protein HMPREF9011_01877 [Bacteroides sp. 3_1_40A] gi|317386792|gb|EFV67684.1| hypothetical protein HMPREF9011_01877 [Bacteroides sp. 3_1_40A] Length = 386 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 52/375 (13%), Positives = 110/375 (29%), Gaps = 45/375 (12%) Query: 1 MTPSL---RLPPFVTKERTRHGKIIYY---FRKGHGRRIRLPY-----PHESTFIPAYMS 49 MT + P + +++ +G + Y +R G ++ L + Sbjct: 1 MTKKTTIQKEPVKLREKKLANGNVSLYLDIYRNGKRQKEYLKLYLIDATTPLEREQNRQT 60 Query: 50 ALTGSTPKREYINSPRKKPTTLKW-------LISEYRKSAHWGSL---AVNSRISFESYF 99 T K + + + + + YRK + + ++ S Sbjct: 61 LATAQAIKSKRLIEMQNGEYSFTRQFKEDTPFLEYYRKMVEERHKNPESEGNWGNWRSCL 120 Query: 100 DQIIRKSGDFD-YRKITTKHIRSGVE---------SRKHTPS---------SAIQFLTS- 139 + + ++ IT + I + ++ P S ++ Sbjct: 121 RYLEIYCDEKTTFKDITPEFINGFKDFLNNVEKDTHKRTGPRRERDVFQGLSQNSKVSYF 180 Query: 140 --MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197 +R A + + +NP +E K T E+++Q + + AF Sbjct: 181 NKLRACINQAYDERIIPVNPLRGIEGFKAAEVKRDYLTLEEVKQLAATPCRYPILKRAFL 240 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI 257 F +GLR SD + +Q + + + Sbjct: 241 FSCLTGLRKSDIQKLTWSEVQKFGDYTRIVFKQKKTGGQEYLDISSQAEKYLGERGNPED 300 Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKT 315 S+ + + A +NK + H R A + D GA + + G K Sbjct: 301 PVFTGFTYGAWTSLELQRWSMAANINKNLTFHCGRHTFAVLMLDLGADIYTVSKLLGHKE 360 Query: 316 VDQAETYTKGADRIR 330 + + Y K D+ + Sbjct: 361 LATTQIYAKVLDKNK 375 >gi|311744114|ref|ZP_07717920.1| integrase/recombinase XerD [Aeromicrobium marinum DSM 15272] gi|311313244|gb|EFQ83155.1| integrase/recombinase XerD [Aeromicrobium marinum DSM 15272] Length = 306 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 40/291 (13%), Positives = 91/291 (31%), Gaps = 28/291 (9%) Query: 71 LKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGVE-- 124 ++++Y L+ ++ S+ + G D +T + +RS + Sbjct: 8 WAQILADYEHHLTRERDLSPHTVRSYLVDVRGLAEHATRLGIHDPAAMTIRTLRSHLATL 67 Query: 125 -SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 S ++ + T++RV W R ++ + P + + DM++ Sbjct: 68 KSLGRARATLSRRATALRVFTAWLQRSGRADLDVGALLASPAARRTLPATLSAADMREVL 127 Query: 184 SFWSE--------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIIT 234 + G++ E L +G+R + + + + ++ K T Sbjct: 128 DAATAMIDGDPVTGTRDLAILELLYATGVRVGELVGLDLDDVDRSRRVVRVLGKGRKERT 187 Query: 235 VELPDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKA-GV- 282 V L PI + +++ + GV Sbjct: 188 VPFGLPAQDALDAWLAVGRPAVATPISGHAVLLGVRGGRIDPRTVRQVVHDRLGAVDGVA 247 Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 + HG+R +AT + GA + G ++ + YT ++ Sbjct: 248 DLGPHGLRHTAATHLLEGGADLRSVQEVLGHASLGTTQIYTHVSNERLRAA 298 >gi|160937668|ref|ZP_02085028.1| hypothetical protein CLOBOL_02558 [Clostridium bolteae ATCC BAA-613] gi|158439313|gb|EDP17065.1| hypothetical protein CLOBOL_02558 [Clostridium bolteae ATCC BAA-613] Length = 401 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 41/398 (10%), Positives = 102/398 (25%), Gaps = 69/398 (17%) Query: 13 KERTRHGKIIYYFR--KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 + R R + F K +G+R + + T A + + Sbjct: 5 RTRKRGSTWEWSFEGAKINGKRNPISHGGYRTKAEAITAGTQAKAEYDSAGRRFTPSDIS 64 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT 129 + + + + +L+ N++ +E + G + + T I+ ++ K Sbjct: 65 VSDYLDYWYDNYVKTNLSYNTQKDYEKKIRVHLKPAFGKYRLASLETDVIQKWIDGMKRQ 124 Query: 130 PSS---AIQFLTSMRVLFK---WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 S L+ + + + + + E +++ Sbjct: 125 GYSRSMVKNTLSCLSGALGYAVYPCKYIKYNPCDYARIPKIVMSDEAKAHTEYICVKEDF 184 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--------------------FS 223 + E P F L +G C + + Sbjct: 185 AAIIERFGPDSNFYVPLMTGYHCGTRLGEAYGIDLLHDVDFERHTITIQHQLTNEGGKWY 244 Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM------------------- 264 + K ++ T+++ + K+L ++ + + Sbjct: 245 YRPPKYDSVRTIKILPEYEKILKTEIHNRKKNMLRYGQYFTKTYQMDDGLIFQAPSNVKI 304 Query: 265 -----------------NATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHE 306 F K + G +H +R T+ A+ GA Sbjct: 305 VGKEIMPISAKENGELLTPYSFKYCAKVIHEELGNPLFHSHCLRHTHGTLLAENGAQPKT 364 Query: 307 LMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVV 343 +M G K + Y + ++ ++ + Sbjct: 365 VMERLGHKDIKTTMDRY--VFNTEKMQNDAIVILADAI 400 >gi|325953803|ref|YP_004237463.1| integrase [Weeksella virosa DSM 16922] gi|323436421|gb|ADX66885.1| integrase family protein [Weeksella virosa DSM 16922] Length = 355 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 30/265 (11%), Positives = 94/265 (35%), Gaps = 16/265 (6%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129 ++ S + N+ ++ + F + D +T +++ K + Sbjct: 82 AFKQFINYLTLKSYSNNTIKTYRTEFLSFLNFFDDVAVENLTPDQLQAYFLVCATQHKLS 141 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 ++ + +++ + + + RPK+ + + ++++ ++ Sbjct: 142 EATINSRMNAVK----FYYEKVLKYERMFFDIPRPKKPLQLPKTLNRKEILL-LFSVTDN 196 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLLAM 247 + + + GLR S+ + + + + +++ ++ V LP ++ L + Sbjct: 197 LKHLMILKLCYGMGLRVSELAKLKIIDIDSQTMTVRIERGKGKKDRFVTLPQSILEDLRL 256 Query: 248 TPIGKETFFINNDKQK---MNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGA 302 + + + + ++ FK KA + K+ H +R AT + G Sbjct: 257 YYVTYRPSYFLFEGRGGSEISTRTIQKVFKDAMHKAKIQKNVGIHSLRHSYATHLLELGT 316 Query: 303 TAHELMATYGWKTVDQAETYTKGAD 327 + G +++ +YT ++ Sbjct: 317 DISHIQKLLGHESIKTTLSYTHVSN 341 >gi|319648636|ref|ZP_08002848.1| integrase [Bacillus sp. BT1B_CT2] gi|317389284|gb|EFV70099.1| integrase [Bacillus sp. BT1B_CT2] Length = 405 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 54/385 (14%), Positives = 103/385 (26%), Gaps = 62/385 (16%) Query: 20 KIIYYFRKGH---GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76 K Y + G+R + T A A + +K T + Sbjct: 22 KWYYRYDIVDPTTGKRKQKEVGGFRTKAEAEEEAKRIQYELLQ-GTYIEEKEITFEEFAK 80 Query: 77 EYRKSAHWGSL-AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ 135 E+ V++ + +++ + IT K + + K + Sbjct: 81 EWLIWYENTGKVKVSTIRVRKHEISRLMDYFQYLKMKDITRKQYQEALNDLKARGYAENT 140 Query: 136 F---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE---------GIRPWTKEDMQQFK 183 + R++FK A+ E + +P PK + + KE++ F Sbjct: 141 IDGAHRTGRMIFKRAIELEVIKTDPTEYAIVPKVQKTVEELEREKELPKYLEKEELAHFL 200 Query: 184 ---SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------- 230 + F L Y+G+R + C + +I KT Sbjct: 201 SIIPDHQMDIRDYPIFLTLAYTGMRAGELCALKWSDIDFEEQTISITKTYYNPRNAIKEY 260 Query: 231 ---------------------------TIITVELPDGFMKLLAMTPIGKETFFINNDKQK 263 E+ K N Sbjct: 261 ELLTPKTKKSKRVIDVTKDVLIELDKLRKAQKEVQMKHRKTYHNEGFVFAQLDEVNAGYP 320 Query: 264 MNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE- 320 I K A +N + H +R ++ A+AG + ++M G D + Sbjct: 321 AYVKLIEIRMKRLLKIANLNPSLTPHSLRHTHTSLLAEAGVSLEQIMDRLGHTDDDTTKN 380 Query: 321 TYTKGADRIRLGIKNSRRISSVVDS 345 Y + + S + S ++ S Sbjct: 381 IYLHITKPKK--KEASHKFSELMRS 403 >gi|260642635|ref|ZP_05416696.2| integrase [Bacteroides finegoldii DSM 17565] gi|260621236|gb|EEX44107.1| integrase [Bacteroides finegoldii DSM 17565] Length = 406 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 43/300 (14%), Positives = 93/300 (31%), Gaps = 22/300 (7%) Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESY-------FDQIIRKSGDFDYR--KITT 116 K TT +Y + A S + Y + + K G D ++T Sbjct: 104 KVKTTFVEFYDKYLEDIKAQVGAGKSIALYHKYSAARSHFVNFLHAKYGRKDLMPGELTH 163 Query: 117 KHIRSGVESRKH----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 I K +SA + L + + +A + + +P L+ + Sbjct: 164 LIIHDFEIYLKTVVSLKSNSATKTLKFFKTVVIFAQKCGVMTHDPFLNH-HFHLEPVDRG 222 Query: 173 PWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229 T E++Q+ E + R F F + GL D +++ Sbjct: 223 FLTDEEIQRIMQKDFEIPRLEMVRDVFIFSCFCGLAYIDVAHLTQENIITLDNRPWIIIN 282 Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM-NATQFSIWFKAKATKAGVNKSA-- 286 V+ +++ M + +N + + + + + K A G+ K Sbjct: 283 RQKTNVQSNIPLLEIPQMILDKYKGKTKDNRLLPVLSNQKINAYLKEIADLCGIKKRLSY 342 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI--RLGIKNSRRISSVVD 344 H R AT+ G + G + + Y + ++ + ++ + + + Sbjct: 343 HLARHTFATMLLSKGVPIESVSKMLGHTNIKTTQIYARITNKKIEQDMMQVADKFDGFKN 402 >gi|210611276|ref|ZP_03288831.1| hypothetical protein CLONEX_01021 [Clostridium nexile DSM 1787] gi|210152040|gb|EEA83047.1| hypothetical protein CLONEX_01021 [Clostridium nexile DSM 1787] Length = 327 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 30/263 (11%), Positives = 77/263 (29%), Gaps = 14/263 (5%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRKH 128 + + + + + + + ++ G ++TT+ +R RK Sbjct: 51 DAVEAFITAKRIEGCSEKTLRYYRKTIESMLSAIGKK-ASQVTTEDLRKYLTTYQTQRKS 109 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + + + F W ++++ +P + + K +T E ++ + + Sbjct: 110 SKVTIDNIRRILSSFFSWLEDEDFILKSPVRRIHKVKTAKLVKDTYTDEALELMRDNCTT 169 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAM 247 ++ + L SG+R + + + N V L Sbjct: 170 -TRDLAIIDLLASSGMRVGEMVMLNREDIDFNERECVVIGKGNKERLVYFDARTKIHLQN 228 Query: 248 TPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300 + N ++ + + + K H R+ AT + D Sbjct: 229 YLNERTDTNPALFVSLNPPHDRLMIGGVETRLRELGKRLNLPKVHPHKFRRTLATSAIDK 288 Query: 301 GATAHELMATYGWKTVDQAETYT 323 G ++ G + +D Y Sbjct: 289 GMPIEQVQQLLGHQKIDTTMHYA 311 >gi|149198071|ref|ZP_01875119.1| phage integrase [Lentisphaera araneosa HTCC2155] gi|149198416|ref|ZP_01875461.1| phage integrase [Lentisphaera araneosa HTCC2155] gi|149200078|ref|ZP_01877103.1| phage integrase [Lentisphaera araneosa HTCC2155] gi|149136836|gb|EDM25264.1| phage integrase [Lentisphaera araneosa HTCC2155] gi|149138422|gb|EDM26830.1| phage integrase [Lentisphaera araneosa HTCC2155] gi|149138983|gb|EDM27388.1| phage integrase [Lentisphaera araneosa HTCC2155] Length = 294 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 31/274 (11%), Positives = 84/274 (30%), Gaps = 24/274 (8%) Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-- 126 + + + + A ++ ++ ++ ++ + ++ Sbjct: 3 DSFQKYYRAMQLELKLQAKAKSTVDNYLRALRRVNDLIAS-PLDQLKEEELKLYFSELVD 61 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 ++ S+ ++ +++ +++E+ + R ++++ S Sbjct: 62 TYSWSTVKMDRCALSFFYQYVLKREWKWLEIVR----IPRVKSLPDILSQDETLLILSHL 117 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKL 244 + + R + GLR S+ R + + ++ K V LP ++ Sbjct: 118 EKA-RYRTCLTAIYSMGLRISEGVRIQTGDICKDRMRLHVRNSKGYKDRLVPLPQVTYQM 176 Query: 245 LAMTPIGKETFFINNDKQ------------KMNATQFSIWFKAKATKAGVNK--SAHGVR 290 L + + + M+ FKA +G+ K S H +R Sbjct: 177 LRDYWVMHRNPLLLFPRYAGKSRSNSKTTLHMDKGGVQSAFKAALADSGLAKQVSVHSLR 236 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324 AT +AG + G + Y+ Sbjct: 237 HSYATHLVEAGVNLRVIQEILGHSSPATTAIYSH 270 >gi|294102004|ref|YP_003553862.1| integrase family protein [Aminobacterium colombiense DSM 12261] gi|293616984|gb|ADE57138.1| integrase family protein [Aminobacterium colombiense DSM 12261] Length = 294 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 31/273 (11%), Positives = 76/273 (27%), Gaps = 21/273 (7%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVES 125 L+ ++ + N+ +++ + + + + + + Sbjct: 7 DQLLDDFLDYLFLERGCSENTILAYNRDIKAWLDFCDKNDQPAYPPNQTYLERYQRSLHE 66 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 SS + + S+R ++ ++ V L P + + ++++ Sbjct: 67 EGKKRSSQQRAIASLRSWLRYLDSEKLVEEEVTLPT-LPLKGDSLPHILNEGEVERIFEA 125 Query: 186 W----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDG 240 + R E GLR S+ C ++ + + +++ G + Sbjct: 126 CSGNSFLALRDRAILETAYGCGLRASELCTICLRDIDFSGRTLRIFGKGGKERIIPFLGE 185 Query: 241 FMKLLAMTPIGKETFFINN------DKQKMNATQFSIWFKAKATKAGVNKS---AHGVRK 291 + + + K + AG++ S H +R Sbjct: 186 VSRRVGFYMEKARPDAHVQELFISKTGNPLRREDIWRIVKKRGAAAGISSSRLFPHILRH 245 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324 AT G L G T+ E Y Sbjct: 246 SFATHLLRRGMDLRTLQELLGHATIATTEKYVH 278 >gi|238789383|ref|ZP_04633169.1| Tyrosine recombinase [Yersinia frederiksenii ATCC 33641] gi|238722526|gb|EEQ14180.1| Tyrosine recombinase [Yersinia frederiksenii ATCC 33641] Length = 263 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 42/247 (17%), Positives = 80/247 (32%), Gaps = 17/247 (6%) Query: 102 IIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPC 158 I + G ++ + +RS V K SS L+++R W V Q + NP Sbjct: 3 IGEQMGLAHWQTLDAAQVRSLVSRSKRAGLHSSSLALRLSALRSFLDWLVSQGVLQANPA 62 Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQ 215 + P+ + +++ + + R E + +GLR S+ + Sbjct: 63 KGISTPRSGRHLPKNIDVDEVDKLLDIDLNDPLAVRDRAMLEVMYGAGLRLSELVGMNCK 122 Query: 216 HLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMT-------PIGKETFFINNDKQKMNAT 267 H+ + K V + + L + F+ N ++++A Sbjct: 123 HVDLASGEVWVMGKGSKERKVPIGKTAVTWLEHWLALRELFEPQDDAIFLANTGKRISAR 182 Query: 268 QFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 F K GV + H +R AT ++ + G + + YT Sbjct: 183 NVQKRFAEWGVKQGVSSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTH- 241 Query: 326 ADRIRLG 332 D L Sbjct: 242 LDFQHLA 248 >gi|197285858|ref|YP_002151730.1| phage integrase [Proteus mirabilis HI4320] gi|194683345|emb|CAR44052.1| phage integrase [Proteus mirabilis HI4320] Length = 327 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 51/322 (15%), Positives = 113/322 (35%), Gaps = 20/322 (6%) Query: 11 VTKERTRHGKIIYYFRK--GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 +T ++ G+ R +G+RIR ++ A+ + + K+E+ + Sbjct: 1 MTIKKLEDGRYEVDIRPTGRNGKRIR-RKFNKKHEAIAFERYVMANHSKKEWGTKLKDIR 59 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-- 126 L L+ + +G + N + ++ + ++ + + ++T+K I R Sbjct: 60 P-LDELVELWWN--MFGKHSENGKSNYNNAM-RVCKGMHSSNVSQVTSKSISFYQNERFA 115 Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 PS+ + L ++R +F ++ Y A NP + ++ K + T ++ ++ Sbjct: 116 KGIKPSTINRELYAIRGIFSQLIKMGLYEAENPFIEAKKLKINASEMSYLTLDETRKLL- 174 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 + F L +G R ++ + +H+ N KT V + Sbjct: 175 -ANLEGDYYNIAVFCLSTGARWGEAMKLKREHIIENKVRFTYTKTRKARIVPISKELCDQ 233 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATA 304 + ++ F K+ ++ H +R AT G + Sbjct: 234 ICKGKKDLLFSS-------VSYQVFRKILKSVKPSLPDGQATHVLRHTFATHFMINGGSI 286 Query: 305 HELMATYGWKTVDQAETYTKGA 326 L G ++ Q TY A Sbjct: 287 ITLQRILGHASLKQTMTYAHFA 308 >gi|295087166|emb|CBK68689.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A] Length = 420 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 94/302 (31%), Gaps = 18/302 (5%) Query: 46 AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESY--FDQII 103 Y SA+ + + E + + S + + + +++ ++ Sbjct: 106 EYDSAILYTDKENEIAAQNERSEQDFIKYFNG-IISTRHPNSSDSIIVNWRRVGELLKMY 164 Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTP-----------SSAIQFLTSMRVLFKWAVRQEY 152 ++ I+ K + P ++A + + ++ K A EY Sbjct: 165 SHGQPIPFKAISVKLLEDIKMFLLRAPMGGNKKGTISQNTASTYFSILKAGLKQAFIDEY 224 Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212 + ++ V+ + T ++Q + + AF F + +GLR SD Sbjct: 225 LTVDISAKVKGITNIEKPRVALTMNEVQMLVDTPCKDDVLKRAFLFSILTGLRHSDIQSL 284 Query: 213 GVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS 270 + +Q + + L + I + +A+ S Sbjct: 285 KWKQIQQTNKGTWQAVVVQQKTKRPDYKPVIQQALQLCGIRPNDDEALVFEGLTDASWIS 344 Query: 271 IWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 K +G+ K + H R A++ + G + + + G V + YT + Sbjct: 345 RPLKVWIEASGIKKHITFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHLVNE 404 Query: 329 IR 330 + Sbjct: 405 QK 406 >gi|293383852|ref|ZP_06629758.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecalis R712] gi|293388673|ref|ZP_06633167.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecalis S613] gi|307286791|ref|ZP_07566875.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecalis TX0109] gi|312906933|ref|ZP_07765930.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecalis DAPTO 512] gi|312978812|ref|ZP_07790538.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecalis DAPTO 516] gi|291078769|gb|EFE16133.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecalis R712] gi|291081990|gb|EFE18953.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecalis S613] gi|306502103|gb|EFM71388.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecalis TX0109] gi|310627187|gb|EFQ10470.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecalis DAPTO 512] gi|311288249|gb|EFQ66805.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecalis DAPTO 516] gi|315032392|gb|EFT44324.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecalis TX0017] gi|323480155|gb|ADX79594.1| phage integrase family protein [Enterococcus faecalis 62] Length = 384 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 51/368 (13%), Positives = 110/368 (29%), Gaps = 54/368 (14%) Query: 11 VTKERTRHGKIIYYFRK--------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62 + + + ++G+ +YF+ G + AL + + Sbjct: 4 IKQYKKKNGEKAWYFKTYLGTDPLTGKKKYTTKRGFRTQKEAK---IALARLEMEIQKNG 60 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122 P T + + + ++ + + + I+ G + KI+T + + Sbjct: 61 IPSSTNITFQEVAFMWLENYKNTVKESSYSRTEIIFRKHILPSFGKIEISKISTAYCQKI 120 Query: 123 VESRKHTPSSAIQ--FLTSMRVLFKW-----AVRQEYVAINPCLSVERPKRKTEGIRPWT 175 V + SS F+ M +FK+ Q V + + I+ +T Sbjct: 121 VNTWHSKGSSKQYPLFINYMNQVFKFAINIGVTNQNPVINVIVPKNQDIITSEKKIKFYT 180 Query: 176 KEDMQQFKSFW------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------- 218 K+ +Q F + F L +SG R + L Sbjct: 181 KDQLQIFLKSIEQSESTYITIRDYTLFRLLAFSGCRIGELLALTWDDLNIKTGELQINKT 240 Query: 219 -----NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA------- 266 + S + + T+ L + +L + ++ + + + + Sbjct: 241 IAKSDHYYVSNTPKTKKSNRTLILDAKTITILKKWKLEQKKYLLKLGYTQPSRIFTNEEN 300 Query: 267 -----TQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA- 319 + + KA + HG R A++ AGA E+ G + Sbjct: 301 EFTINQAITDRYNIYRKKANLPNIGLHGFRHTHASLLYYAGADHKEVQERLGHANIKTTL 360 Query: 320 ETYTKGAD 327 +TYT + Sbjct: 361 DTYTHLTN 368 >gi|257084635|ref|ZP_05578996.1| phage integrase [Enterococcus faecalis Fly1] gi|256992665|gb|EEU79967.1| phage integrase [Enterococcus faecalis Fly1] Length = 377 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 48/377 (12%), Positives = 103/377 (27%), Gaps = 49/377 (12%) Query: 11 VTKERTRHGKIIYYF------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64 + K + G Y F G+ + T A ++ E Sbjct: 4 INKYTKKDGTTAYMFNAYVGRHPKTGKNVYRKRQGFKTKKQAQIALAEILKDIEENGLDN 63 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGV 123 + T K L ++ ++ ++ + ++ GD IT + V Sbjct: 64 KHSVLTFKQLYDKWLAQQRL-NVKPSTIALNRRFVERHVLPYIGDCLLSDITVIQCQDLV 122 Query: 124 ESRKHTPSSAIQF-LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + + + ++A E + NP PKR E + + Sbjct: 123 NEWFNQGYKQYTYFRKVTAQIMRYAEAMEIMLSNPMSKTILPKRPKEEEKLKYYTKEELM 182 Query: 183 KSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHL-----------------QNNI 221 F + F L ++G R S+ + L NN+ Sbjct: 183 HFFKCLKEFGNFKQLAFFRLLAFTGCRKSEILSLQWKDLDLINKSVSIGKTLALDEDNNV 242 Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN---------------A 266 + + ++ L D ++++ + + + + Sbjct: 243 IIQTPKTESSNRSISLDDETVRIMTKWRTIQRSDYFQMGFNTSSEEQYIFTNDRNELYYP 302 Query: 267 TQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 + W K K + + H R A++ +G E+ G K Y+ Sbjct: 303 QVVNDWLKYLIKKYKLPIITPHHFRHTHASLLLQSGVPMKEVSERLGHKDTTITDRIYSH 362 Query: 325 GADRIRLGIKNSRRISS 341 + K + + +S Sbjct: 363 VMPEEK--EKTADKFAS 377 >gi|312131663|ref|YP_003999003.1| integrase family protein [Leadbetterella byssophila DSM 17132] gi|311908209|gb|ADQ18650.1| integrase family protein [Leadbetterella byssophila DSM 17132] Length = 275 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 34/271 (12%), Positives = 86/271 (31%), Gaps = 21/271 (7%) Query: 72 KWLISEYRKSAHWGSLAVNSRISF----ESYFDQIIRK--SGDFDYRKITTKHIRSGVES 125 + ++ E+ K A N+ ++ + Y + D +I ++ + Sbjct: 4 EHILKEFEKQLIEQRYAPNTIRAYLDYSKLYLQHVQPYESLQDVPLSEIE-SFVKQKSDQ 62 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + + + K + ++ + ++KE++++ Sbjct: 63 ISIS------YQKGLVGAIKKIHDLVGKQKLELKFLYPKRKFESLPKYFSKEEIKRIFDA 116 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMK 243 + + + GLR SD + ++ + SI++ K V LPD +K Sbjct: 117 T-PNVKHKAILMIIYSCGLRVSDLINLKMSDIKTHDKLLSIRSTKNSKDRWVTLPDPLIK 175 Query: 244 LLAMTPIGKETFFINNDKQ---KMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISA 298 +L + + + + + K G+ + H +R A Sbjct: 176 ILRSYYNEYQPKNYLFENPDGGQYSERSVQLILKRALKNGGIKTAGTVHSLRHSFAIHLL 235 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRI 329 +G H + + G +++ E Y + Sbjct: 236 QSGTDLHTVQSLMGHQSIKTTEIYAQMIQSK 266 >gi|78777937|ref|YP_394252.1| Phage integrase [Sulfurimonas denitrificans DSM 1251] gi|78498477|gb|ABB45017.1| Phage integrase [Sulfurimonas denitrificans DSM 1251] Length = 270 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 35/256 (13%), Positives = 83/256 (32%), Gaps = 17/256 (6%) Query: 77 EYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT-----P 130 E+ K + + S++ + I ++ + HI + + P Sbjct: 2 EFLKYLEDIRGYSDLTIKSYD---ESITEALKSIEFVQ-DKNHILLNLMPYRIKISTLNP 57 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 + + L+++R + E + K +P + ++ + + S Sbjct: 58 KTISKKLSAIRSFADYLNDNEI--SVMLKGDDSIKVAKTLPKPISHVNIIEAINLASLD- 114 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT-- 248 R+ GLR S+ ++++ + K V L + K+L Sbjct: 115 -ERVVVTLFYTLGLRISELASLELKNVSDEWVR-VIGKGSKQRDVPLLEQSKKVLDEYLS 172 Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELM 308 + F + +K++ + G+ S H +R A+ + A ++ Sbjct: 173 KSPHKKFVFEKNGEKLSENSLRYIITKVFRRVGLKVSPHQLRHSFASQLLNGNAPIADVS 232 Query: 309 ATYGWKTVDQAETYTK 324 G ++ + YTK Sbjct: 233 ELLGHSSMATTQIYTK 248 >gi|24375788|ref|NP_719831.1| integrase/recombinase XerC [Shewanella oneidensis MR-1] gi|34222793|sp|Q7ZAJ5|XERC_SHEON RecName: Full=Tyrosine recombinase xerC gi|24350736|gb|AAN57275.1|AE015863_4 integrase/recombinase XerC [Shewanella oneidensis MR-1] Length = 299 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 31/275 (11%), Positives = 87/275 (31%), Gaps = 20/275 (7%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIRSGVESRKH---TP 130 Y +S L+ ++ ++ + + D + +H + + +P Sbjct: 12 FEAYMQSE--RQLSAHTVRNYLYELQRGRELLPEGIDLLNVGREHWQQVLAKLHRKGLSP 69 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 S +L++++ ++ +R + +NP + PK+ + + + Sbjct: 70 RSLSLWLSAVKQWGEFLLRAGAIELNPAKGLSAPKQAKPLPKNIDVDSLTHLLEIDGNDP 129 Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA 246 + + E SGLR ++ + +Q + ++ K V + + ++ Sbjct: 130 LTLRDKAIMELFYSSGLRLAELAALDLSSVQYDQREVRVLGKGNKERIVPVGRYAIDAIS 189 Query: 247 MTPIGKETFFINNDK-------QKMNATQFSIWFKAKAT--KAGVNKSAHGVRKFSATIS 297 + ++ ++++ + H +R AT Sbjct: 190 AWLECRRQIPCEDNALFVTEKGKRLSHRSIQARMSKWGQEQALSMRVHPHKLRHSFATHM 249 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 ++ A + G + + + YT D L Sbjct: 250 LESSADLRAVQELLGHENLSTTQIYT-SLDFQHLA 283 >gi|323705319|ref|ZP_08116894.1| integrase family protein [Thermoanaerobacterium xylanolyticum LX-11] gi|323535221|gb|EGB24997.1| integrase family protein [Thermoanaerobacterium xylanolyticum LX-11] Length = 288 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 38/260 (14%), Positives = 93/260 (35%), Gaps = 20/260 (7%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRK 127 ++ K+ L+ N+ S++ Q I + +D KIT + ++ + Sbjct: 6 QAFIDFLKNE--KKLSDNTVESYKRDITQFIGYLKENNIEYYDVNKITIISYLNFLKHKN 63 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + S+ + L+S++ +++ +++ P +++ PK + + + E + + S Sbjct: 64 MSQSTISRHLSSIKSFYQYLFMNKFIDKEPAYTLDAPKIEKKVPLTLSVEQVDKLLSHEF 123 Query: 188 E----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 E G + + E L +GL+ S+ ++ + N K+ + + D + Sbjct: 124 ENSEKGLRDKAILEVLYATGLKVSELISLHIKDVNLNYGY-IYCKSSKERFIPIGDSALN 182 Query: 244 LLAMTPIGKETFFINNDKQ------KMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSAT 295 L + + + K G + + +RK A Sbjct: 183 ALQNYISVRRKIDQDEFLFLNLRGEPLTRQGCWKIIKEYTNIVNPGFDITPSILRKSFAK 242 Query: 296 ISADAGATAHELMATYGWKT 315 + GA + G+K+ Sbjct: 243 HMLENGADIRSVQEILGYKS 262 >gi|228905038|ref|ZP_04069077.1| YdcL (Lambda integrase-like, N-terminal,DNA breaking-rejoining enzyme, catalytic core) [Bacillus thuringiensis IBL 4222] gi|228854583|gb|EEM99202.1| YdcL (Lambda integrase-like, N-terminal,DNA breaking-rejoining enzyme, catalytic core) [Bacillus thuringiensis IBL 4222] Length = 353 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 35/344 (10%), Positives = 98/344 (28%), Gaps = 41/344 (11%) Query: 11 VTKERTRHGKIIYYFRK-----GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65 + K+ R Y+ + G ++++ + + + Sbjct: 3 IYKDEQRG--TYYFVTRIRQFDGTLKQVKRRGFKTKKEAREAEAKM--------LVEKET 52 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVE 124 T Y +S + ++ + ++ + G+ +I KH+ + Sbjct: 53 TSSLTFSQAADSYFNWYSQRR-KQSSIETIKNVIYNHLVIEFGNLKVEQIIPKHVMNYQN 111 Query: 125 SRKHTPSS--AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + S+ + + +F ++++ + NP ++++ + + + + Sbjct: 112 KIINKYSAKHLKKIHAVLSAIFNFSIKFHGLTNNPAKITGNFEKESNKRMNFWEFEEFKQ 171 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELPDG 240 + + F L YSG R + + + +I + +T Sbjct: 172 FILAVDDPLYKTFFSVLYYSGARKGELMALTWSDINFDEKTININKTEYNRQVTEPKTKA 231 Query: 241 FMKLLAMTPIGKETFFINN------------------DKQKMNATQFSIWFKAKATKAGV 282 +++ + + ++++ F A V Sbjct: 232 SNRIIMLPSFIMDMLHDIKKTAALNAPVKSDYVVFGEFYNSISSSTLRQKFIKYIKIAQV 291 Query: 283 NK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 K H R A+ + G + + G V TY+ Sbjct: 292 KKIVLHEFRHSHASYLINKGVSPLIVAQRLGHSDVATTLNTYSH 335 >gi|298244308|ref|ZP_06968114.1| integrase family protein [Ktedonobacter racemifer DSM 44963] gi|297551789|gb|EFH85654.1| integrase family protein [Ktedonobacter racemifer DSM 44963] Length = 378 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 51/365 (13%), Positives = 105/365 (28%), Gaps = 52/365 (14%) Query: 19 GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78 G+ +G+R L AL +++ T+K + + Sbjct: 17 GRWAAVISLDNGKRKTLYGKTRKEVQEKLKKAL----HEQQEGRLITAPQQTIKHYLEYW 72 Query: 79 RKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137 + H ++ + + +E ++ G +K+ +H+++ S+ SA + Sbjct: 73 LEEVHRQNIRIRTYERYEEIVRLHLVPALGHHMLQKLAPQHLQTFYNSKLREGLSATTVI 132 Query: 138 T---SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194 + + A+R +A N C V P+RK + E QQF S Sbjct: 133 SFHNVLHKALDHAMRWRLMAYNVCDLVSPPRRKHIELETLNMEQAQQFLSAV-RDHPQEA 191 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG------------------------ 230 F + +G+R + + + ++ ++ Sbjct: 192 LFLLAIGTGMRRGEIMGLKWRDIDLATRRLQVRRVLTRIPSRISGKGYIEDEPKSEKSRR 251 Query: 231 ------------TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278 V + +K F + FK Sbjct: 252 NIVLPSFVLEGLKQHRVRQLEAKLKAGPRWEEHDYVFCTSVGTHVNPDRDIQEPFKKLLK 311 Query: 279 KAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGA-----DRIRL 331 KAG+ H +R +AT+ G + G ++ + Y+ D +RL Sbjct: 312 KAGLPNIRFHDLRHSAATLMLSMGVHPKIVQEILGHSRINMTLDVYSHVLPTMQKDAMRL 371 Query: 332 GIKNS 336 Sbjct: 372 LDDAL 376 >gi|229096923|ref|ZP_04227892.1| DNA integration/recombination/invertion protein [Bacillus cereus Rock3-29] gi|228686533|gb|EEL40442.1| DNA integration/recombination/invertion protein [Bacillus cereus Rock3-29] Length = 368 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 49/365 (13%), Positives = 106/365 (29%), Gaps = 43/365 (11%) Query: 17 RHGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + G G+R + + T A + + TL Sbjct: 7 KRGNKYCIVIDIGADPETGKRRQKWFSGYKTKKEAEKD-VAKKITELNDGTFIEPSKVTL 65 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESY-FDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 K + E+ K + ++ +E +I G + K+ I+ + Sbjct: 66 KDYLLEWLK-VKEMEVDKSTYAGYECIVLKHLIPALGKNTFNKLNVIQIQQFYRNLTGKL 124 Query: 131 SSAIQFL--TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 S++ L + A+ Q + NP +PK++ I+ WT+E+++ F Sbjct: 125 SNSRIILIHRVLNTALNQAIAQNLITTNPAKFAAKPKKERTSIQTWTEEEVKTFLLHSQ- 183 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--------------GTIIT 234 S+ F + +G+R + Q + + ++ +T + T Sbjct: 184 NSRYHTGFILAITTGMRLGEVLGLRWQDVDFDNHTVTINQTLGHDNKIKQSAKTSSSKRT 243 Query: 235 VELPDGFMKLLAMTPIGKETFF--------------INNDKQKMNATQFSIWFKAKATKA 280 + +P + L + + + F + KA Sbjct: 244 LPIPIETINALKKHHLFIKKEKLRFGNAYNDSNLIVCTMSGNIVYRDYFRKSYYTIIQKA 303 Query: 281 GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRR 338 V K H +R AT+ G + G + Y+ + + Sbjct: 304 NVPKIKFHDLRHTHATLLLKQGVHPKIVSERLGHSNISMTLSVYSHVLPN--MQEDAVKN 361 Query: 339 ISSVV 343 + + Sbjct: 362 FAKNI 366 >gi|124515110|gb|EAY56621.1| putative phage integrase [Leptospirillum rubarum] gi|206603735|gb|EDZ40215.1| Putative phage integrase [Leptospirillum sp. Group II '5-way CG'] Length = 325 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 44/315 (13%), Positives = 93/315 (29%), Gaps = 12/315 (3%) Query: 16 TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75 R G ++ RI A+ + + +++ + TTL + Sbjct: 6 KRSGSWRAIVKRKGFDRIT-RTFDTKASAEAWARQIEAEMDRGVFVSRKEAESTTLSEAL 64 Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ 135 Y + + S + + + + R SA Sbjct: 65 DRYEREVSSSKKGHRREKTRISIWKN--HPLAKRVLASFRGNDLAAYRDERIKAGYSANT 122 Query: 136 F---LTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 L + LF+ A ++ + NP ++ P R ++++ SE Sbjct: 123 IRLELAIISHLFEIARKEWGMEGLTNPVKAIRMPSPPAGRDRRLQPGELEKLLESSSEEM 182 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250 F L + +R + + + ++ +T +P F+ L++ Sbjct: 183 NQ--VIRFALETAMRRGELAGMTWEMVDMKKRTVTLPETKNGQKRIVPLSFV-ALSILKE 239 Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMA 309 T ++ + S F AG+ H +R + + + G E+ Sbjct: 240 RLGTRRLDGKVWDIGLDAISQDFAKACRNAGISGLHFHDLRHEATSRLFEKGFDTMEVRT 299 Query: 310 TYGWKTVDQAETYTK 324 G KT+ YT Sbjct: 300 ITGHKTLQMLARYTH 314 >gi|78189718|ref|YP_380056.1| phage/XerD family site-specific recombinase [Chlorobium chlorochromatii CaD3] gi|78171917|gb|ABB29013.1| site-specific recombinase, phage/XerD family [Chlorobium chlorochromatii CaD3] Length = 338 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 41/300 (13%), Positives = 82/300 (27%), Gaps = 49/300 (16%) Query: 75 ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRKH- 128 I + + A L+ N+ +++ Q D R + + Sbjct: 23 IQAFLEHVAQRRGLSPNTVVAYRGDLIQFFTFLAQHLELLDLRAFQPESVTPMDVRLFMG 82 Query: 129 -------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 S + L +++V +++ + S+ PK T+E + Sbjct: 83 FLLEQGVKQRSIARKLVAVKVFYRYLQEHGIITTCLFSSLGSPKFPQRVPNFLTEEQTSK 142 Query: 182 FKS--------------------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221 ++ E L SGLR S+ + L Sbjct: 143 LFELLETVPNGAVSDSQPANSALHAFTAARDCSILELLYSSGLRVSELVNLRMDELDVER 202 Query: 222 -FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK-QKMNATQFSI-------- 271 + K V + ++ L + FF N + + + + Sbjct: 203 GYVKVHGKGNRERIVPVGAAAIEALKKYFEVRRNFFRMNKEVEPFTSVFVTQKGAKIYPM 262 Query: 272 -WFKAKATKAGV-----NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 + A + K+ H +R AT ++GA + G + E YT Sbjct: 263 LVQRVTARHLSLVTEQKKKNPHLLRHTFATHLLNSGADLESVSEMLGHSNLATTELYTHV 322 >gi|310825725|ref|YP_003958082.1| phage integrase family site specific recombinase [Eubacterium limosum KIST612] gi|308737459|gb|ADO35119.1| phage integrase family site specific recombinase [Eubacterium limosum KIST612] Length = 412 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 57/383 (14%), Positives = 113/383 (29%), Gaps = 62/383 (16%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK-- 66 ++T + HGK IY R + E+ + A K++ N P Sbjct: 19 RYITGYKEIHGKAIYRSIYADTYREIVALLEEAEKSVSEKVAFERLIRKQKRNNLPVTSL 78 Query: 67 --------------KPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDY 111 TTL+ + ++ + S+ +S + S I+ + GDF Sbjct: 79 EHMAENYSFRNSVQGGTTLRQCLVQWLEEHKKFSVKASSYTRYCSIVYKHIVPQLGDFPV 138 Query: 112 RKITTKHIRSGVESRKH--------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163 +T ++ + + PS+ L + F+ + E V NPC +V Sbjct: 139 ADVTAAVVQDYIHYLRTDANKHKGLAPSTIKIHLVLLSSFFEKMIELEMVQNNPCEAVRI 198 Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNI 221 P + + + + Q+ + + + A LL +G+R + + Sbjct: 199 PPSQKKKPNYLKQNEYQKLEKVLEDKICDKRARAILLALKTGIRLGELAALRWTDIDLQS 258 Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ------------------- 262 +I + + + + P + + Sbjct: 259 KTIHVRHSIQRVKAKSPGKNKTEIVFGQTKSVCSQRDIPMNDGIYTLLYSYQKVLKKSGI 318 Query: 263 --------------KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHEL 307 ++ + +F KAG+ + H +R ATI+A L Sbjct: 319 FTEESFVFSNRQGSYLDPRAYQNYFSKLLKKAGIRCVNFHALRHTFATIAASKNMQISTL 378 Query: 308 MATYGWKTVD-QAETYTKGADRI 329 G T + Y D Sbjct: 379 SRILGHSTPTITLQIYVHAVDEQ 401 >gi|296451879|ref|ZP_06893596.1| conserved hypothetical protein [Clostridium difficile NAP08] gi|296879726|ref|ZP_06903701.1| conserved hypothetical protein [Clostridium difficile NAP07] gi|296259261|gb|EFH06139.1| conserved hypothetical protein [Clostridium difficile NAP08] gi|296429315|gb|EFH15187.1| conserved hypothetical protein [Clostridium difficile NAP07] Length = 424 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 53/387 (13%), Positives = 112/387 (28%), Gaps = 61/387 (15%) Query: 10 FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 + + + GK F G R + S +A+ + + + Sbjct: 13 GLYQRKD--GKYCGRFYDRFGIRRYVYGKTISETKEKLNTAMY----EDKMEMNVADNTV 66 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRS---GVES 125 TL ++ + + +A ++R+ +ES + I G + I IR ++ Sbjct: 67 TLDEWYQKWLEIYKYKVIAPSTRVQYESIYKKHIQTDFGHMKLKDIQPLQIRGKLVNLDK 126 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + + + + +F AV NP +++ + + + R + E+ F Sbjct: 127 KGFGYETQNKVRILLLDMFNKAVADNVAMKNPVRNIKVVRDEEKEPRVLSTEEQSAFFDT 186 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN----------------------NIFS 223 +G+ F + +GLR + + L Sbjct: 187 -CKGTFYDNLFNVAISTGLRPGELYALEAEDLDFEKKVIHITKSLSYQKFEGDTGKTFHM 245 Query: 224 IKTQKTGTIITVELPDGFMKLLAMT----------------PIGKETFFINNDKQKMNAT 267 KT+ + V + L + F +NA Sbjct: 246 GKTKTKSSYRDVPMNRRCEIALKKQLLQKRVVSGRNGAKTLKGFENLIFTTKYDTPLNAQ 305 Query: 268 QFSIWFKAKATKAGV---------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 ++ K + + S H R AT +AG + G T+ Sbjct: 306 IYADAIKVIVEQINLMREELEQFETFSGHCFRHTFATRCFEAGIQPKTVQKYLGHATLQM 365 Query: 319 AE-TYTKGADRIRLGIKNSRRISSVVD 344 YT + L + ++ S ++ Sbjct: 366 TMDLYTHVLEN-HLSDE-MDKLDSRLE 390 >gi|229164788|ref|ZP_04292620.1| DNA integration/recombination/invertion protein [Bacillus cereus R309803] gi|228618691|gb|EEK75685.1| DNA integration/recombination/invertion protein [Bacillus cereus R309803] Length = 370 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 51/370 (13%), Positives = 112/370 (30%), Gaps = 42/370 (11%) Query: 12 TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT- 70 K+ + GK Y G + A T +++ + Sbjct: 5 VKKDKKTGKYFYIVDIGIDPLTGKRKQKKKRGFTTKKEAENALTMILSEVHTGTYVEPSK 64 Query: 71 --LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK 127 + + + S+ + + + Y + +II G+ K+T+ H+++ V S + Sbjct: 65 LLYGEYLESWFNTKK-HSVGIQTAKVLKGYLNSRIIPSLGNIKLAKLTSLHMQNYVNSLR 123 Query: 128 H---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + + + +R + A+ E + N + PK E + W ++++Q F Sbjct: 124 DDGLKRGTIEKIIKFIRNSLEHAIDLELITKNVATKTKLPKGDKEELTVWNEQEVQLFLK 183 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------------ 232 +G + + F L +G+R + + + + +T + Sbjct: 184 AAQDG-RYSMVFHMALVTGMRQGELLGLRWKDVDLEKGHLTISQTLSHDGKTFLLGGKTK 242 Query: 233 ---ITVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKA 275 + LP + L + +N A Sbjct: 243 SSLRKILLPASTVAGLKKHRAVVLKEKLSQGEEYQDNDLVMCTPSGTPINPANVRRSLNA 302 Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGI 333 KA V K H +R AT+ G + G + +TY+ + Sbjct: 303 LIRKAAVPKIRFHDLRHTHATLLLAKGVNVKVISERLGHSNIKITLDTYSHVLPT--MQE 360 Query: 334 KNSRRISSVV 343 +I ++ Sbjct: 361 DAVNKIEEIL 370 >gi|326789971|ref|YP_004307792.1| integrase family protein [Clostridium lentocellum DSM 5427] gi|326540735|gb|ADZ82594.1| integrase family protein [Clostridium lentocellum DSM 5427] Length = 407 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 55/404 (13%), Positives = 108/404 (26%), Gaps = 67/404 (16%) Query: 2 TPSLRLPP------FVTKERTRHGKIIYYFR-----KGHGRRIRLPYPHESTFIPAYMSA 50 P R P T++GK Y G+ IR + + Sbjct: 5 QPKKRKPRSKANGEGTIYATTKNGKTYYKATLTVGTNEDGKLIRKSFCSYKK--QEVIDR 62 Query: 51 LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGD 108 + + + TL + L S +E + I+ G Sbjct: 63 MAEYRTQSNSGLTSSNDKITLNQWFYTWLFEFRINELKDTSFERYEGIYRNYIKGSALGK 122 Query: 109 FDYRKITTKHIRSGVESRKHTPSSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPK 165 I T HI+S + + +++ AV+Q Y+ N C V PK Sbjct: 123 RKLVDIRTAHIQSYYNALAEQGKTTNTIKVLNKTLKTCLNDAVKQGYIVRNYCSLVTMPK 182 Query: 166 R------KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219 + + + Q+ E ++ R+ F L SGLR + ++ Sbjct: 183 CEGAAGTDKDNDITFFTPEEQKTFIGSLEKNKNRMLFILALGSGLRLGELMALKWDNVDM 242 Query: 220 NIFSIKTQKTGTI-------------------------ITVELPDGFMKLLAMT------ 248 ++ + + LP +K L Sbjct: 243 VNNTLSVTHAISRLSKVGKDGSRTWSVLEHDPKTKSSTRIIPLPTKIIKELKKHKAEQDK 302 Query: 249 --------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISAD 299 F + ++ + + AG+ +K H +R AT + Sbjct: 303 LILKYGDLYQKNNLVFCTDLGGYLDTRNLTRSYARALANAGIEHKKFHSMRHTYATRLFE 362 Query: 300 AGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSV 342 + + G + YT + ++++ + Sbjct: 363 NDVPIKTVQSLMGHNDITTTMNIYTHVTPQQ--MTDEVQKLNKI 404 >gi|255690132|ref|ZP_05413807.1| integrase/recombinase, phage integrase family [Bacteroides finegoldii DSM 17565] gi|260624416|gb|EEX47287.1| integrase/recombinase, phage integrase family [Bacteroides finegoldii DSM 17565] Length = 327 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 41/264 (15%), Positives = 87/264 (32%), Gaps = 14/264 (5%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 LI + + + S + S + IRK + + R ITT +R+ + + T Sbjct: 50 SELIDSFLSAKRVEGCSDKSIHYYRSTLNNAIRKI-EKNIRHITTDDLRNYLNDYQQTSG 108 Query: 132 ----SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + + F W ++Y+ +P + + K ++ E ++Q + Sbjct: 109 ATKVTVDNIRRILSSFFSWLEDEDYIVKSPVRRIHKVKVGKTVKETYSDEALEQMRDHC- 167 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLA 246 EG + + L +G+R + + + I T K V L Sbjct: 168 EGIRDLALIDLLASTGMRVGELVKLNRNDIDFENRECIVTGKGDKQRRVYFDARTKIHLQ 227 Query: 247 MTPIGKETFFINND------KQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299 + ++ + I + + + K H R+ AT++ D Sbjct: 228 RYLAERIDDNPALFVSLLAPYDRLQISGVEIRLRRLGRELNIPKVHPHKFRRTLATMAID 287 Query: 300 AGATAHELMATYGWKTVDQAETYT 323 G ++ G +++D Y Sbjct: 288 KGMPIEQVQHLLGHQSLDTTLQYA 311 >gi|262201179|ref|YP_003272387.1| integrase family protein [Gordonia bronchialis DSM 43247] gi|262084526|gb|ACY20494.1| integrase family protein [Gordonia bronchialis DSM 43247] Length = 463 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 44/381 (11%), Positives = 102/381 (26%), Gaps = 73/381 (19%) Query: 19 GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR---KKPTTLKWLI 75 G Y G A+ + + + + TL + Sbjct: 10 GSWYYVVDLGRDPATNKRRQERKRGFRTKREAVDALDERLSEVRTGIVAVDQRLTLAQYL 69 Query: 76 SEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG------------ 122 + + + + + S+ + D I+ G+ R + H+ Sbjct: 70 ASWLTAKEQAGIRATTLRSYRQHVDSYIVPTIGNVRLRDLRATHVEHMLSEIAKPPKKPA 129 Query: 123 ----------VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 + +P++ + ++R A R+ V+ N +E P+ ++ Sbjct: 130 KGVAIGKGKRRNPKALSPATQRRVHATLRSALTSAKRKHLVSFNAAADMELPRASRPKVK 189 Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 PW D+ F ++ + FE + +GLR ++ + + + Sbjct: 190 PWEASDLGAFLDHATKD-RLGAFFETIAMTGLRRGEALGIRWPDVDFEKARVTVNQQLVE 248 Query: 233 I--------------------------------------------TVELPDGFMKLLAMT 248 + + + Sbjct: 249 VDGTGIDCPFCGGEHKQFRFGPCKTASGEARIVDLDSGTLGVLMAQRLRQEQEREQWGDA 308 Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHEL 307 + F D + + F A +AG+ + H +R A++ AG + Sbjct: 309 YNDHQLVFAREDGSPIPPADVTAKFHALTDEAGLRRIRLHDLRHGQASLMLAAGVPIAVV 368 Query: 308 MATYGWKTVDQA-ETYTKGAD 327 G ++ +TY+ D Sbjct: 369 SKRLGHSSISITSDTYSHLLD 389 >gi|322435641|ref|YP_004217853.1| integrase family protein [Acidobacterium sp. MP5ACTX9] gi|321163368|gb|ADW69073.1| integrase family protein [Acidobacterium sp. MP5ACTX9] Length = 352 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 53/348 (15%), Positives = 113/348 (32%), Gaps = 21/348 (6%) Query: 9 PFVTKERTRHGKIIYYFRKGH-GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67 V + G +++G +R ++ + I Y T + + R K Sbjct: 11 RGVYEREPGSGVWWICYKQGTVRKREKVGRKGD--AIELYRQRKTELRAGAKLAPNLRHK 68 Query: 68 PTTLKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 T L E SA + + + + G +T + I S + Sbjct: 69 GVTFGVLAEEALAWSAEFH---PKDIKTVMGRMKMLTGEFGLVAASDLTPQMIDSWLTDY 125 Query: 127 KHT------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + P++ ++ + ++++ +R V NP V +R ++ + Sbjct: 126 RTKGKNVLAPATKNRYRALISLVYRQGMRNGKVKANPARLVAARAENNARVRYLLPDEEK 185 Query: 181 QFKSFWSEGSQPRL-AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVEL 237 ++ G + A + L SG+R S+ + + I K G+ + + Sbjct: 186 ALRTAMENGRLCYIPALDVALNSGMRLSEQFSLTWEAIDFGRKEIVLDETKNGSSRHIPM 245 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNA--TQFSIWFKAKATKAGV-NKSAHGVRKFSA 294 + + + WF+A A +AG+ + + H +R Sbjct: 246 NSTCEAAFRSLVVAGQKPADRVFSSRHGKAINTPRKWFEASAEEAGITDLTWHSLRHTFC 305 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342 + A AG + G KT+ A Y+ + L ++ +V Sbjct: 306 SRLAMAGVDIRTIAQLAGHKTLAMAMRYSHLSPSHNL--SAIEKLVAV 351 >gi|320161829|ref|YP_004175054.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1] gi|319995683|dbj|BAJ64454.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1] Length = 292 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 40/274 (14%), Positives = 85/274 (31%), Gaps = 28/274 (10%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVESR--- 126 + ++ + + + + + ++T +R Sbjct: 4 LEQFEVWLQEQDRSPVTVRGYMADLRAFAAWFEQTNGKALGVEEVTPADVREYRGWLQAV 63 Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS- 184 + ++ + L ++R +W V E + +P V+ P+ +T K++ + Sbjct: 64 KRAGAATVRRHLMALRAYCRWGVETERIDRDPTARVKLPREETLSPGWLAKQEQYRLLRE 123 Query: 185 ------------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQK 228 + R FLL +GLR +++C V+ +Q ++ K Sbjct: 124 AERAVSAADTPTRRRLAVRDRALVVFLLNTGLRIAEACALTVEDVQIGERSGWVVVRGGK 183 Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHG 288 V L + L + + + +AGV H Sbjct: 184 GNKSRKVPLNVEVRRALNAWREERGDGEGSVFDL--TPSGAYRRLVEMGRRAGVEVHPHT 241 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETY 322 +R A DAG HE+ A G +++ Y Sbjct: 242 LRHTLAKNLVDAGVGLHEVAALLGHSSLNTTRVY 275 >gi|260464185|ref|ZP_05812378.1| tyrosine recombinase XerC [Mesorhizobium opportunistum WSM2075] gi|259029988|gb|EEW31271.1| tyrosine recombinase XerC [Mesorhizobium opportunistum WSM2075] Length = 312 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 44/291 (15%), Positives = 86/291 (29%), Gaps = 31/291 (10%) Query: 71 LKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIR- 120 L+ + K A L+ + ++E Q + G D + +R Sbjct: 12 LQAAREGWLKMLARERRLSPETVEAYERDTRQFLHFLTGHCGGSPGISDIANLRPADLRG 71 Query: 121 --SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + + + L +R L ++ R+ ++ P++ +P T D Sbjct: 72 FLAARRNAGAGARTLGRGLAGIRSLLRFLERRGLANAAGAAALRAPRQPKSLPKPLTASD 131 Query: 179 MQQFKSF-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--IKTQKT 229 + S ++ L SGLR S++ L + + T K Sbjct: 132 AKHVVSVEGQLAEEPWIAARNAAVLTLLYGSGLRISEALGLAGADLASEADTVLRVTGKG 191 Query: 230 GTIITVELPDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKAGV 282 G V + ++ +A F +N + + Sbjct: 192 GKTRLVPVLPVALRAIAEYRRLCPHHLDPKGLLFRGARGGPLNPAIIQRDMAKLRSALNL 251 Query: 283 N--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 + H +R AT G + G ++ + YT G D RL Sbjct: 252 PDTATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQIYT-GVDTTRL 301 >gi|228986847|ref|ZP_04146975.1| Prophage LambdaBa04, site-specific recombinase, phage integrase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228772929|gb|EEM21367.1| Prophage LambdaBa04, site-specific recombinase, phage integrase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 357 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 49/358 (13%), Positives = 102/358 (28%), Gaps = 50/358 (13%) Query: 27 KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS 86 G ++ + + K Y + + ++ + K Sbjct: 2 TGKRKQKSKSGFRTKKEAQQAAATMITEIKKGMYFDDKQLS------VLDIWEK-LKPIR 54 Query: 87 LAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTS 139 A S+E I+ G + I I+ K + Sbjct: 55 KAELKITSYEKDMSLVRLYILPTFGYKKIKSIKPVMIQCYYAELKEKGLSNGTISNIHRC 114 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-GSQPRLAFEF 198 R +FK AV E + N V++P+ + ++ W+ E+ +F + E + + F Sbjct: 115 FRCIFKHAVEWEIIHNNIMNKVKKPREEQGEMKTWSSEECNRFLHYLKEKNKKYYMFFLL 174 Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------------- 230 +Y+G+R + + + + I K+ Sbjct: 175 AIYTGMRRGELLALTWKDIDFDNRRILVNKSIVKTEEGLFNAATKTKSSNRSISISSFVV 234 Query: 231 ---TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SA 286 V F + F N ++ + K KAGV + Sbjct: 235 TELQSYYVYKKKEFFRWGIHLNEEAFIFAGNTIHSPLHIDAPHRFLKDHYKKAGVPRIRI 294 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVV 343 H +R AT+ AG + G ++ + Y+ + + + +V+ Sbjct: 295 HDLRHTHATLMLQAGEHPKIVQDRLGHSSIQMTLDKYSHITQN--MQQQAAENFENVI 350 >gi|225376750|ref|ZP_03753971.1| hypothetical protein ROSEINA2194_02392 [Roseburia inulinivorans DSM 16841] gi|225211376|gb|EEG93730.1| hypothetical protein ROSEINA2194_02392 [Roseburia inulinivorans DSM 16841] Length = 323 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 34/263 (12%), Positives = 80/263 (30%), Gaps = 14/263 (5%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK----H 128 + + + H + + + ++++ + KITT+ +R + + Sbjct: 47 DFLDMFLTTKHLERCSDKTIRYYRCNIEKMLDTI-NIPVIKITTEMLRKYLVEYQTINNC 105 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + S+ F W ++Y+ +P + + K E ++ Sbjct: 106 GKVTIDNIRRSLSTFFSWLEEEDYIIKSPMKRIHKVKTAVIVKDTIPDEKIEI-LRDNCN 164 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAM 247 + R +FLL +G+R + R + + + L Sbjct: 165 NLRDRAMIDFLLSTGIRVGELVRLNIDDIDFSERECVVYGKGDKERKAYFDAKTKIHLLN 224 Query: 248 TPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300 + I N ++ + + + K GV K H R+ T + + Sbjct: 225 YIESRTDNNIALFVSLNKPHSRLTESGVELRLREMGKKLGVEKVHPHKFRRTMDTRAIEK 284 Query: 301 GATAHELMATYGWKTVDQAETYT 323 G ++ G + +D Y Sbjct: 285 GMLIEQVQKILGHEQIDTTLRYA 307 >gi|323186140|gb|EFZ71495.1| integrase [Escherichia coli 1357] Length = 374 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 46/304 (15%), Positives = 91/304 (29%), Gaps = 18/304 (5%) Query: 28 GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87 G+RIR + Y + E+ + + L LI + K Sbjct: 69 RKGKRIR-KKFKTKSDAVLYERWVLAQQHNNEWKGNSIDRRP-LSVLIDLWWKYHGQLMK 126 Query: 88 A-VNSRISFESYFDQIIRKSGDFDYRKITTKH---IRSGVESRKHTPSSAIQFLTSMRVL 143 + N+ ++ D K+ T +R + PS+ + + ++R + Sbjct: 127 SGHNT----RLKLLRLSEAMDDPCVHKLNTTMLTELRVSRIEQGIQPSTINREIGALRAM 182 Query: 144 FK-WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202 F ++ NP ++ K + +K + Q +E RLA E LL + Sbjct: 183 FTALISSGHFLNDNPVQGLKGMKVNEREMGYLSKSECVQLLDALAENPDERLAVEILLST 242 Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262 G R + + + + + K TV + + + + ++ Sbjct: 243 GARWGEVAALEQRRVLHCRITFSKTKNSKNRTVPISESLFEKIKKRGGKLVFPTLDYPL- 301 Query: 263 KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 K A ++ H +R A+ G L G + Y Sbjct: 302 ------VRDVIKTVAPDVPDGQAVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIY 355 Query: 323 TKGA 326 A Sbjct: 356 AHLA 359 >gi|70726809|ref|YP_253723.1| integrase [Staphylococcus haemolyticus JCSC1435] gi|68447533|dbj|BAE05117.1| integrase [Staphylococcus haemolyticus JCSC1435] Length = 341 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 44/323 (13%), Positives = 101/323 (31%), Gaps = 18/323 (5%) Query: 19 GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT-TLKWLISE 77 GK Y K G+R R + G E +P TL Sbjct: 8 GKKWQYEFKYEGKRYRKKGFRTKREANS-----AGLDKLSELKQGIEYEPNLTLYDYFKT 62 Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVES--RKHTPSSAI 134 + ++ ++ + S+ S + I G + ++ H + + + H+ S Sbjct: 63 WCETFKKSTVTPKTYKSYASAIEHINNHPIGKKKLKDLSRYHYQDFINEFSKHHSKESIR 122 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVER----PKRKTEGIRPWTKEDMQQFKSFWSEGS 190 + +R AV + +A NP V P + + K+ + ++ + Sbjct: 123 KLNGYIRTSLDDAVYEGLIAKNPTFKVSYRASKPNKSEDSKYINLKDYEILKQHLMTKDN 182 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQN---NIFSIKTQKTGTIITVELPDGFMKLLAM 247 L ++ +G R S + +++ I+ + + + V + M + Sbjct: 183 ASSLVLFIMICTGCRISGALNLKREYINQVKSEIYIDEHKTDSSPRYVSISQKDMNHIIK 242 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHE 306 + ++ + K G+ ++H +R + G + + Sbjct: 243 SIDQLPRTIDGTVFGELTNNAVNKRLKVYCNNLGIKEITSHALRHTHCSYLLAKGISIYY 302 Query: 307 LMATYGWKTVD-QAETYTKGADR 328 + G K + E Y+ + Sbjct: 303 ISKRLGHKNISVTTEVYSHLLEE 325 >gi|307718588|ref|YP_003874120.1| DNA integration/recombination/invertion protein [Spirochaeta thermophila DSM 6192] gi|306532313|gb|ADN01847.1| DNA integration/recombination/invertion protein [Spirochaeta thermophila DSM 6192] Length = 299 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 42/285 (14%), Positives = 93/285 (32%), Gaps = 25/285 (8%) Query: 72 KWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESRKH 128 + L+ YR + + ++ ++ ++ + + + Sbjct: 6 ERLLRRYRTHLVAELGRSRLTEETYLPLCERFCAWLECRGLEVGTVSRRTCEEFIVDERG 65 Query: 129 TP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + + ++++R F++ V + NP ++ P+ R +E+++ Sbjct: 66 EGKETRTIAKEMSALRSFFRFLVLEGVRPDNPLEEMDAPRISRTLPRVLEEEEVEILLEA 125 Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------ 229 EG + R E L GLR S++C +Q + + +K + Sbjct: 126 VDTAPPEGMRDRCLLEVLYSCGLRVSEACGLDLQDIFLSEGFVKVRGKGEKERLVPFGKE 185 Query: 230 --GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAH 287 + + ++ F+N ++++ I K +GV+ H Sbjct: 186 AGHWMRRYLSEARPVLAARRPGSREQAVFLNRWGRRLSRKGAWIRLKRLVAASGVDAKLH 245 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 R AT GA E+ G + + YT D RL Sbjct: 246 TFRHTCATHLLHGGANLREVQEFLGHADISTTQIYTH-VDARRLA 289 >gi|262383463|ref|ZP_06076599.1| integrase [Bacteroides sp. 2_1_33B] gi|262294361|gb|EEY82293.1| integrase [Bacteroides sp. 2_1_33B] Length = 420 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 94/302 (31%), Gaps = 18/302 (5%) Query: 46 AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-- 103 Y SA+ + + E + + S + + + +++ + + Sbjct: 106 EYDSAILYTDKENEIAAQNERSEQDFIKYFNS-IISTRHPNSSDSIIVNWRRVGELLKMY 164 Query: 104 --------RKSGDFDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMRVLFKWAVRQEY 152 + I +R+ + K + ++A + + ++ K A EY Sbjct: 165 SQGQPIPFKAISVKLLEDIKMFLLRAPMGGNKKGTISQNTASTYFSILKAGLKQAFIDEY 224 Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212 + ++ V+ + T ++Q + + AF F + +GLR SD Sbjct: 225 LTVDISAKVKGITNIEKPRVALTMNEVQMLVDTPCKDDVLKRAFLFSILTGLRHSDIQTL 284 Query: 213 GVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS 270 + +Q + + L + + +A+ S Sbjct: 285 KWKQIQQTSKGTWQAVVIQQKTKRPDYKPVIQQALQLCGERSSNDEALVFEGLTDASWIS 344 Query: 271 IWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 K +G+ K + H R A++ + G + + + G V + YT + Sbjct: 345 RPLKVWIEASGIKKHITFHVARHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHIVNE 404 Query: 329 IR 330 + Sbjct: 405 QK 406 >gi|257064113|ref|YP_003143785.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM 20476] gi|256791766|gb|ACV22436.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM 20476] Length = 451 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 46/391 (11%), Positives = 100/391 (25%), Gaps = 80/391 (20%) Query: 11 VTKERTRHGKII---YYFRK------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61 + + + ++GK I + G +R++ + + I Sbjct: 10 IYQAKDKNGKPIPNCWRISVSFGSAGGDRQRVQCTVRGTKAEAKKKRDEIRRQHEEGLAI 69 Query: 62 NSPRKKPTTLKWLISEYRKSAHWGSL-AVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 + T+ I + ++ + + ++ + I G K+T I Sbjct: 70 D---AGKVTVSEFIETWLEARQTTGKVSEFTIKNYHARLKTIEPYIGKKKLNKVTAAEIE 126 Query: 121 SGVESRKHTPS----SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 K S + + ++ +F+ A + + NPC VE P + T+ Sbjct: 127 RAYAQLKAKKSLSDTTLNKLHILLKSVFEKACDYDLILRNPCNKVESPSVDKPDRKSLTQ 186 Query: 177 EDMQQFKSFWSEGSQPRLAFEFL---------------------------------LYSG 203 E+ R+ E L +G Sbjct: 187 EEGATLLHKLDLEE-ARIIQEMDEKEERQVKKGNQFGRSSIRGLANLGFTIGTRIALATG 245 Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKT---------------------------GTIITVE 236 L + +++ +I +T + + Sbjct: 246 LHRGEVFGLTWKNVNLRQNTITVAQTLTKEGEIKDPKTGAGRRTISIDESTAAHLRMWRK 305 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSAT 295 + LA+ + + +N F W+++ AG H +R AT Sbjct: 306 RQREELAKLAIKLGDATPVCCSERGEWVNLANFERWWRSFRDDAGFEGLRFHELRHSQAT 365 Query: 296 ISADAGATAHELMATYGWKTVDQAET-YTKG 325 + G + G Y Sbjct: 366 LLLANGTDLKTVQDRMGHANGAITLNWYAHA 396 >gi|237794601|ref|YP_002862153.1| site-specific recombinase, phage integrase family [Clostridium botulinum Ba4 str. 657] gi|229261244|gb|ACQ52277.1| site-specific recombinase, phage integrase family [Clostridium botulinum Ba4 str. 657] Length = 355 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 45/360 (12%), Positives = 108/360 (30%), Gaps = 37/360 (10%) Query: 11 VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN----SPRK 66 + +++ + Y G + + +A+ S + E P Sbjct: 6 LIRKKDKG--YQYIITYKVGNKWKTKSKQGFKKRQDAQTAMDKSLVELEKSVKNNMDPSM 63 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 T K Y + N+ ++F++ + + + + KI+ I+ V+S Sbjct: 64 SEITFKQFTDMYLEHMKIYRTT-NTILAFKTVLNHFV-TLSNKELTKISNIDIQHIVDSL 121 Query: 127 KHT---PSSAIQFLTSMRVLFKWAVRQEYVAIN-PCLSVERPKRKTEGIRPWTKEDMQQF 182 T PS+ +++ + +FK A+ + P +++ K K + + E+ + Sbjct: 122 TLTGLNPSTIQEYIRKLNTIFKSAMDDYNIIDKLPTKNLKFNKSKQQVNKRALNENEENK 181 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------- 232 + ++ L L GLR + + +I K Sbjct: 182 LLEDFKSNKYYLVILLGLKCGLRLGEILGLTWSDIDEVNKTIIINKQWKQVNPTKYNFGE 241 Query: 233 -------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285 + + + L + N++ G + + Sbjct: 242 LKSKNSNRIIPISKNTLDELKKHKKIVNINNRIFKFKNTNSSCI--CLNRLLKLKGYDIT 299 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345 H +R AT G + G +TY+ D ++ + ++++ Sbjct: 300 VHELRHTYATKLISNGVDFKTVAQLLGHTVEQTMKTYSHVND------DMMKKATKIIEN 353 >gi|330815343|ref|YP_004359048.1| phage integrase [Burkholderia gladioli BSR3] gi|327367736|gb|AEA59092.1| phage integrase [Burkholderia gladioli BSR3] Length = 347 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 49/346 (14%), Positives = 107/346 (30%), Gaps = 25/346 (7%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 +T G RK + + Y++ + T+ Sbjct: 6 KTTSGTWKAVIRKTGWP-TTAKTFRTKRDAEDWARRTEDEMVRGVYLSRAPSEKLTVSAA 64 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134 + Y K ++ S + G + ++ + + + R S Sbjct: 65 LKRYMKEVSATK-KATTQRSESFSAKHLEAFFGKYSMAAVSAELVAKYRDERLAAGKSNN 123 Query: 135 QF---LTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 L + LF+ A+++ + NP +V +P R ++++ Q+ + Sbjct: 124 TVRLELAMLGHLFRMAIQEWGIGLTFNPVANVRKPSPGAGRDRRLSRDEQQRLFAAADAH 183 Query: 190 SQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVELPDGFMKLL 245 S P L + L +G+R S+ + + + + K G+ V L ++L Sbjct: 184 SNPMLGWIVRLAVETGMRSSEITGLCRSQVDLDRRVVTLRDTKNGSSRMVPLTREAAEVL 243 Query: 246 A--------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATI 296 F K F + G+ + H +R + + Sbjct: 244 RAALDNPIRPIDTDLVFFGEPGRDGKRKPYVFQKLWAGIVRDLGMADLHFHDLRHEAVSR 303 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342 +AG + E+ + G K++ + YT +R+ S+ Sbjct: 304 LVEAGLSDQEVASISGHKSMQMLKRYTHL-----RAEDLVQRLDSL 344 >gi|296114852|ref|ZP_06833500.1| site-specific tyrosine recombinase XerC [Gluconacetobacter hansenii ATCC 23769] gi|295978558|gb|EFG85288.1| site-specific tyrosine recombinase XerC [Gluconacetobacter hansenii ATCC 23769] Length = 324 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 38/295 (12%), Positives = 76/295 (25%), Gaps = 49/295 (16%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD-------------FDYRKITTKHIRSGVESRKHTPS 131 + + ++ + + G + ++ + P Sbjct: 18 RRASPRTTEAYRGDLHRFLDFLGGHLGGEVDVAALDALSLADLRAWLAFEHDQALRPRPG 77 Query: 132 -----------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK---- 176 + + ++++R F++ R V + P+ K RP + Sbjct: 78 HRVTTRDRAARTRARRVSALRSFFRYLARHHGVDNPAPALLAAPRVKKTLPRPLSHEDAL 137 Query: 177 ---EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI---------FSI 224 + + + + F L GLR S++ V L + Sbjct: 138 EVPQGVGEIAHTPMARMRDGALFLLLYGCGLRISEALSLDVADLDRAMALGGGADEGVLR 197 Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------FSIWFKAKAT 278 K G V L + L + Sbjct: 198 IMGKGGKERMVPLLPVVGRALREWRRHHPAPVAGAPLFPGVRGGRLQAAVAQRAMRTWRH 257 Query: 279 KAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 AG+ + H +R AT + GA + G ++ + YT AD RL Sbjct: 258 MAGLPDHATPHALRHSFATHLMEGGADLRVIQELLGHASLSTTQRYT-LADESRL 311 >gi|291557595|emb|CBL34712.1| Site-specific recombinase XerD [Eubacterium siraeum V10Sc8a] Length = 282 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 37/274 (13%), Positives = 88/274 (32%), Gaps = 18/274 (6%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---H 128 K + R A +L + + S +R G + +T + S + +++ Sbjct: 3 KDIFESIRNEAEKRNLRERTIQLYCSDVSYFLRWIG-KNVSDLTLEDAESFLTAKRLEGR 61 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +P + + ++++ L+K ++ + +++++ Sbjct: 62 SPETHNHYRSAIKFLYKKVLKILWDDDTVPAMKRE----RNLPVVLSRDEINAIIDAT-P 116 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLA 246 + + + SGLR S+ + N ++ K L + LL Sbjct: 117 NLKHKAIIATMYSSGLRVSEVVHLHYDDISRTNMTIHVRETKGRIDRYTILSQKNLDLLT 176 Query: 247 MTPIGKETFFINNDKQKMNA-----TQFSIWFKAKATKAGV--NKSAHGVRKFSATISAD 299 + + +FK A AG+ + S+H R A+ + Sbjct: 177 EYWYKCGRPKDILFPSSWSGGYLDIASVNQFFKKSAKLAGINRHVSSHACRHSFASHLFE 236 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 +G + + G + Y +++ LGI Sbjct: 237 SGTDIKYIQSLLGHVDPRSTDVYLHVSNKTLLGI 270 >gi|315223453|ref|ZP_07865310.1| tyrosine recombinase XerD [Capnocytophaga ochracea F0287] gi|314946626|gb|EFS98617.1| tyrosine recombinase XerD [Capnocytophaga ochracea F0287] Length = 307 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 29/267 (10%), Positives = 73/267 (27%), Gaps = 29/267 (10%) Query: 86 SLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSGVESRKH---TPSSAI 134 + ++ +++ + D + + I+ + + S Sbjct: 15 KYSDHTVEAYKHDLRSFEKFIKSLYEEKGEDCCLEQADQEDIKKWIIHLSDETISFRSIN 74 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR------PWTKEDMQQFKSFWSE 188 + L++++ + + + + + I+P + + + K + Sbjct: 75 RKLSALKTYYNFLKKTKQIEISPFEKGIFLLKTEKKHKLPFSEAEIEKVLSFFSSKDSFD 134 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELPDGFMKLLAM 247 + R E L +G+R S+ V + K + + L Sbjct: 135 EVRNRAVIETLYATGIRRSELSGLKVSDVDFEQKQIKVLGKGDKERYIPIIPELENTLKE 194 Query: 248 T-----PIGKETFFINNDKQKMNATQFSIWFKAKATK------AGVNKSAHGVRKFSATI 296 + E K +S + S H +R A+ Sbjct: 195 YLVLREEVKNEKSQDYLFLVKNGKKIYSTLVYRIINSYFSVVTTKKDVSPHVLRHSFASH 254 Query: 297 SADAGATAHELMATYGWKTVDQAETYT 323 D GA + + G ++ + YT Sbjct: 255 LLDNGADLYTVKELLGHSSLASTQVYT 281 >gi|256820383|ref|YP_003141662.1| integrase family protein [Capnocytophaga ochracea DSM 7271] gi|256581966|gb|ACU93101.1| integrase family protein [Capnocytophaga ochracea DSM 7271] Length = 307 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 29/267 (10%), Positives = 73/267 (27%), Gaps = 29/267 (10%) Query: 86 SLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSGVESRKH---TPSSAI 134 + ++ +++ + D + + I+ + + S Sbjct: 15 KYSDHTVEAYKHDLRSFEKFIKNLYEEKGEDCCLEQADQEDIKKWIIHLSDETISFRSIN 74 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR------PWTKEDMQQFKSFWSE 188 + L++++ + + + + + I+P + + + K + Sbjct: 75 RKLSALKTYYNFLKKTKQIEISPFEKGIFLLKTEKKHKLPFSEAEIEKVLSFFSSKDSFD 134 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELPDGFMKLLAM 247 + R E L +G+R S+ V + K + + L Sbjct: 135 EVRNRAVIETLYATGIRRSELSGLKVSDVDFEQKQIKVLGKGDKERYIPIIPELENTLKE 194 Query: 248 T-----PIGKETFFINNDKQKMNATQFSIWFKAKATK------AGVNKSAHGVRKFSATI 296 + E K +S + S H +R A+ Sbjct: 195 YLVLREEVKNEKSQDYLFLVKNGKKIYSTLVYRIINSYFSVVTTKKDVSPHVLRHSFASH 254 Query: 297 SADAGATAHELMATYGWKTVDQAETYT 323 D GA + + G ++ + YT Sbjct: 255 LLDNGADLYTVKELLGHSSLASTQVYT 281 >gi|228942745|ref|ZP_04105273.1| Integrase/recombinase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228975855|ref|ZP_04136385.1| Integrase/recombinase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228982303|ref|ZP_04142579.1| Integrase/recombinase [Bacillus thuringiensis Bt407] gi|228777408|gb|EEM25699.1| Integrase/recombinase [Bacillus thuringiensis Bt407] gi|228783881|gb|EEM31930.1| Integrase/recombinase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228816956|gb|EEM63053.1| Integrase/recombinase [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 308 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 33/305 (10%), Positives = 89/305 (29%), Gaps = 40/305 (13%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRKH- 128 + Y N+ +E+ + I+ D + IT ++ + Sbjct: 1 MENYIVWLKEQGKRENTIKQYETTLKEFIQWYEDTNGVVFQGESITPMDLQEWKQFLMEV 60 Query: 129 ---------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + S+ + ++ FK+ N V++PK + + W Sbjct: 61 AKTNSGKQLSVSTVSTKIGRVKPYFKFLYETNRTQTNLGAMVKQPKIQNKNDAKWLDRIS 120 Query: 180 QQFKSFW-----------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228 + + + + +L +GLR S+ + + +++ S++ K Sbjct: 121 KNRLMRYLEDVELIKKNPWKNYRNLAIVNIMLQAGLRVSEVSKLKLDDIEDGFISVRDGK 180 Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ-----------KMNATQFSIWFKAKA 277 G + + + + ++ + Q ++ FK Sbjct: 181 GGKARKIPMNSDVVNSINKWKEHRQIHQAFKENQTEYLFVSQKNGPLSVVGIENIFKTIR 240 Query: 278 TKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 G+ + H +R G + G ++ + Y + + + Sbjct: 241 KHTGLEELTPHVLRHTFGHDLVQKGIPISYVAELMGHTDINTTKIYVTAGQQEK--QEAV 298 Query: 337 RRISS 341 +++S Sbjct: 299 EKLAS 303 >gi|229020983|ref|ZP_04177670.1| Prophage LambdaBa04, site-specific recombinase, phage integrase [Bacillus cereus AH1273] gi|229023655|ref|ZP_04180148.1| Prophage LambdaBa04, site-specific recombinase, phage integrase [Bacillus cereus AH1272] gi|228737691|gb|EEL88194.1| Prophage LambdaBa04, site-specific recombinase, phage integrase [Bacillus cereus AH1272] gi|228740336|gb|EEL90647.1| Prophage LambdaBa04, site-specific recombinase, phage integrase [Bacillus cereus AH1273] Length = 379 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 47/358 (13%), Positives = 100/358 (27%), Gaps = 50/358 (13%) Query: 27 KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS 86 G ++ + + K Y + + ++ + K Sbjct: 24 TGKRKQKSKGGFRTKKEAQNAAANMITEIEKGMYFDDKQLS------VLDIWGK-LKPIR 76 Query: 87 LAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTS 139 A S+E I+ G + I I+S K + Sbjct: 77 KAELKITSYEKDMSLVKLYILPTFGYKKIKSIKPVIIQSYYAELKEKGLSNGTISNIHRC 136 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-GSQPRLAFEF 198 R +FK AV E + N V++P+ + ++ W+ ++ +F + E + + F Sbjct: 137 FRCIFKHAVEWEILHDNIMNKVKKPREEQGEMKTWSSKECNRFLHYLKEKNKKYYIFFLL 196 Query: 199 LLYSGLRCSDSCRAGVQHLQNNI-------------------------------FSIKTQ 227 +Y+G+R + + + + S Sbjct: 197 AIYTGMRRGELLALTWKDIDFDNKRILVNKSLVKTEEGLFKAATKTKSSNRSISISSFVV 256 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SA 286 F + F N ++ + K KAGV + Sbjct: 257 TELQSYYAYKKKEFFRWGIHLNEEAYIFAGNTIHSPLHIDAPHRFLKDHYKKAGVPRIRI 316 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVV 343 H +R AT+ AG + G ++ + Y+ + + + +V+ Sbjct: 317 HDLRHTHATLMLQAGEHPKIVQDRLGHSSIQMTLDKYSHITQN--MQQQAAENFENVI 372 >gi|95928522|ref|ZP_01311269.1| phage integrase [Desulfuromonas acetoxidans DSM 684] gi|95135312|gb|EAT16964.1| phage integrase [Desulfuromonas acetoxidans DSM 684] Length = 417 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 60/337 (17%), Positives = 110/337 (32%), Gaps = 26/337 (7%) Query: 35 LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRIS 94 + P Y + R + R K TL+ EY + + + + S Sbjct: 74 ITLPDAVQKAQLYRQMIQEGLDPRRTLTERRIK--TLEKFCHEYFEDFIDQNHK-HPKKS 130 Query: 95 FESYFDQIIRKSGDFDYRKITTKHIRSGVE----------SRKHTPSSAIQFLTSMRVLF 144 I+ G ++I ++ + V+ R+ + S+A Q L+ + LF Sbjct: 131 RHMLKRWILPVFGHIPLKQIDSRLVSEFVQQILTTVSQKTERRISGSTAKQALSLLSKLF 190 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS--EGSQPRLAFEFLLYS 202 + A+ Q V NPC V RPK R + ++ +F A L Sbjct: 191 QCAIDQHLVDANPCDGVRRPKVNRSRERYLSGDEYPRFIKATMSLIDRPQAKAIMILAVL 250 Query: 203 GLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND 260 GLR S+ + +N IK K G V L LL ++ + Sbjct: 251 GLRPSEVLGLAWCDVHLIDNRIHIKQAKNGESRFVTLNSVARDLLQQLYDARKKRAVWVF 310 Query: 261 KQKM-----NATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWK 314 + + S F+ A + + + +R+ AT +G + K Sbjct: 311 PSRGKSSTGHLQSVSKTFERICNMAELPEFNLYDLRRSHATFLLQSGVDLFTIKEALHHK 370 Query: 315 TVDQAETYTKGADRIRLGIK---NSRRISSVVDSDDP 348 T+ Y + + + R + ++ +P Sbjct: 371 TLASTMVYARVSSESMVNANELAAQRALEAISGQFEP 407 >gi|260894011|ref|YP_003240105.1| integrase family protein [Ammonifex degensii KC4] gi|260866150|gb|ACX53255.1| integrase family protein [Ammonifex degensii KC4] Length = 288 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 51/289 (17%), Positives = 97/289 (33%), Gaps = 24/289 (8%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHI---RSGV 123 +S + S L+ +S ++ + + FD R +T + R + Sbjct: 2 SDWLSGFEVSCLRRGLSPSSVRAYLGVVRRFVAWWEGTSGEAFDPRAVTPLDVADYRRYL 61 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 R P++ L +++ F+W + + NP V++ R T+ ++ Sbjct: 62 RGRGLKPATVNFNLEAVKSFFRWLKEERALPDNPAEGVKKVPEVKPSPRWLTRREVGLLA 121 Query: 184 SFWSEGS--QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVEL 237 + R F LL++GLR S++ ++ + ++ K G V L Sbjct: 122 RAVQRYGTVKDRALFALLLHAGLRVSEAVSLRLEDVVVRERSGFVRVRYGKGGKYREVPL 181 Query: 238 PDGFMKLLAMT----PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFS 293 ++L P + K M K AGV + H +R Sbjct: 182 NVTVRRVLKEYLAELPPQGGGWLFPGKKGPMTPRAVQKRLKFFGRIAGVEVTPHKLRHTF 241 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK--GADRIRLGIKNSRRIS 340 DAG + ++ G +D YT+ D R ++S Sbjct: 242 CKWLIDAGESLDKVALLAGHARLDTTAVYTRPGRTDLER----AVEKLS 286 >gi|238018829|ref|ZP_04599255.1| hypothetical protein VEIDISOL_00689 [Veillonella dispar ATCC 17748] gi|237864595|gb|EEP65885.1| hypothetical protein VEIDISOL_00689 [Veillonella dispar ATCC 17748] Length = 357 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 49/346 (14%), Positives = 110/346 (31%), Gaps = 41/346 (11%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 ++ G+ + +G+R + I + + Y T + Sbjct: 3 KKRADGRYQVS-KLINGKRKYFYGTTKKAAIAERDAYVESLAQCANY-----DNTITTER 56 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH-TPS 131 + + +++ N+ S++ I+ G +++ ++R+ ++S H + Sbjct: 57 WCEYWIR-LKTDTVSQNTLSSYQYIIKTYIVPFIGSIRLVELSALNVRALMDSMSHLSAR 115 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 + LT +R + K AV E ++ N V++PK++ + ++ + + + Sbjct: 116 TISYTLTVLRAILKQAVMDEIISKNVATLVKKPKQERKREMVTLSKEEVETFLEQIDDVE 175 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------------- 235 F+ +GLR S+ + ++ +T I Sbjct: 176 WHALFKLAFTTGLRRSEILGLTWDDVNLKQKTLTVNQTVLRIDEVTTISKTTKNSSSRRS 235 Query: 236 --------------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 +L A F + + S+ K AT G Sbjct: 236 ISLDDKTIAELLKLRTCVDKRRLKAPNWRNNNLVFPGKFGNPRDPAKVSLKCKKFATAIG 295 Query: 282 -VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKG 325 + + H R AT+ +AG + G + Q TY+ Sbjct: 296 RPDFTMHDTRHTHATLLLEAGVNFKVVQMRLGHSSYQQTMDTYSHV 341 >gi|307710046|ref|ZP_07646491.1| phage integrase family protein [Streptococcus mitis SK564] gi|307619231|gb|EFN98362.1| phage integrase family protein [Streptococcus mitis SK564] Length = 381 Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 54/367 (14%), Positives = 113/367 (30%), Gaps = 48/367 (13%) Query: 11 VTKERTRHGKIIYYFRK--------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62 + K T+ G+ Y F+ G +R A L + + N Sbjct: 2 IKKYITKKGETRYLFQTYLGIDPATGKEKRTTRRGFKTIKEAKAAERDLLLDVEENGFSN 61 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRS 121 + + T + + S ++ + + + D +I D ++I+ + + Sbjct: 62 NEDFQNPTFAEVAELWLDSYK-STVKPTTYQNTKKKLDVMIDSYFTDMKIQQISVAYCQK 120 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK--TEGIRPWTKEDM 179 + + + + +FK+A + + NP + +PK + +TK+++ Sbjct: 121 VAVKLSNRYILYANYYSVISRIFKYATSIDIIKSNPLDKIIKPKNRPLKGKENYYTKQEL 180 Query: 180 QQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQN----------------NI 221 +F + +P F L +SGLR ++ + Sbjct: 181 TEFLKVYKANCKPVNYTFFHLLAFSGLRTGEAIGLMWSDVDFENKLLSISRTAVVIGKKQ 240 Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN------ATQFSIWFKA 275 + + + L D + +L + + + + W A Sbjct: 241 TVQDPKTKRSKRVITLDDETLNVLKLWKRQQIKEYFQAGVPYKHDLNYIFTNNDGGWLLA 300 Query: 276 KATKAGV-----------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYT 323 K + S HG R A++ +AG TA + G V + YT Sbjct: 301 ATMKVKLLRFFRKHNNLKKISPHGFRHTHASLLFEAGITAKIISDRLGHNNVQTTLDMYT 360 Query: 324 KGADRIR 330 D R Sbjct: 361 HINDNQR 367 >gi|194445766|ref|YP_002041997.1| phage integrase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194404429|gb|ACF64651.1| phage integrase [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 336 Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 47/338 (13%), Positives = 93/338 (27%), Gaps = 46/338 (13%) Query: 14 ERTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + G+ + R G+RIR AY + ++ ++ + L Sbjct: 4 RKIDSGEWLCDLRPTGVKGKRIR-KKFATKGEALAYEKYIASEMEEKPWLGEKQDNRR-L 61 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESY---FDQIIRKSGDFDYRKITTKHIRSGVES--- 125 LI ++ L + + I GD +IT+ E Sbjct: 62 SELIEQW------HDLYGRTLSDADRMMSKLKGICAGMGDPIAAQITSADFSQYREGRLK 115 Query: 126 ----------RKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPW 174 P + ++ +F + + NP + K + + Sbjct: 116 GEIPDVNGRLMPIQPQTVNHEQRNLSAVFGTLKKLGHWSLPNPLAGIPTFKVDEKMVSFL 175 Query: 175 TKEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 E+++ + SE S + + L +G R S++ + + K K G + Sbjct: 176 YPEEIKSLLQYLSESSSDSVLIITKICLATGARWSEAENLEGAQVTPYRITYKNTKNGRV 235 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK----SAHG 288 ++ + + T F+ KAG+ H Sbjct: 236 RSIPISKELYDEIPKKRGRLFTPC-------------RKTFERVVAKAGIELPDGQCTHV 282 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 +R A+ G L G + Y A Sbjct: 283 LRHTFASHFMMNGGNILVLKEILGHSDIKMTMIYAHFA 320 >gi|282890174|ref|ZP_06298704.1| hypothetical protein pah_c014o025 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499831|gb|EFB42120.1| hypothetical protein pah_c014o025 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 329 Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 39/310 (12%), Positives = 87/310 (28%), Gaps = 57/310 (18%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--------------------- 108 + + + + ++ ++ + + Sbjct: 2 FIEAAYRFLEYLRIIKNASEHTVRNYAIDLNALKEYLEHDLLPEEEDEKLPPKIRYNEPF 61 Query: 109 ----------FDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155 IT K IR + + + ++ L+S+R FK+ + Q++++ Sbjct: 62 SERLKTYDAALVLDTITRKTIRGFLAHLSDNQVHKRTVVRRLSSLRTFFKYTLAQKWISA 121 Query: 156 NPCLSVERPKRKTEGIRPWTKED----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCR 211 NP +E P+ + + + + Q + G + R+ E SGLR S+ Sbjct: 122 NPTEELESPRVEKKVPNSLSYDQVQTLFDQPDTKTFLGFRDRVIMELFYSSGLRVSELVA 181 Query: 212 -AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ-------- 262 + N+ K V + + E + Sbjct: 182 LDRQEFDPKNLLIKLKGKGKKERIVPITKNAADWINAYLTHPERCVEIDGHFAQQDSNAI 241 Query: 263 -------KMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGW 313 ++ F T +G+ + H +R AT + G + G Sbjct: 242 FLNRLGTRLTTRSVDRKFDKYLTASGLIGKVTPHTIRHTIATHWLENGMDLKTIQMILGH 301 Query: 314 KTVDQAETYT 323 ++ YT Sbjct: 302 ISLATTTIYT 311 >gi|283797399|ref|ZP_06346552.1| putative integrase [Clostridium sp. M62/1] gi|291074952|gb|EFE12316.1| putative integrase [Clostridium sp. M62/1] Length = 408 Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 52/385 (13%), Positives = 100/385 (25%), Gaps = 63/385 (16%) Query: 10 FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 + ++ G + G+R L + S+ A N Sbjct: 13 GIRQKVD--GIYSARYVDKFGKRKELYDRNLSSLKRKLNEAKYN----DAIGNVILDDSL 66 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH 128 TL + + + + N+R+ ++ F I G + IT HIR+ ++ Sbjct: 67 TLSVWFDNWLEIYKYNVIRDNTRVYYKQVFKKHIEPLLGHKRLKDITQLHIRALLKELDK 126 Query: 129 TP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + + + ++ A+ Y NP + PK R ++ E+ F Sbjct: 127 QGLQFQTQNKVRVMLLDMYNKAILDNYAVRNPAKGIRLPKHNKRNKRVFSVEEQIDFFD- 185 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------------------NNIFS 223 +G+ F + +GLR + C + Sbjct: 186 CCKGTFYDNLFTVAVNTGLRQGELCALTWDDIDLEKKEINVEKTLLYQKLEGDTGKTFHI 245 Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK--------MNATQFSIWFKA 275 + + V + L I + + + Sbjct: 246 NPPKTKTSNRKVPINKQCEIALKKQLIQRNNIISRQSAKPEKGFENLLFTTKYATPICDQ 305 Query: 276 KATKAGVNK------------------SAHGVRKFSATISADAGATAHELMATYGWKTVD 317 A + K + H R AT +AG + + G T+ Sbjct: 306 ILIDA-IKKIVNEINSVRSEIEQFEMFTPHCFRHTFATRCFEAGISPKVIQTYLGHSTLQ 364 Query: 318 QAE-TYTKGADRIRLGIKNSRRISS 341 YT K R+S Sbjct: 365 MTMDLYTSVF--KHCEEKAISRLSE 387 >gi|160934965|ref|ZP_02082351.1| hypothetical protein CLOLEP_03840 [Clostridium leptum DSM 753] gi|156866418|gb|EDO59790.1| hypothetical protein CLOLEP_03840 [Clostridium leptum DSM 753] Length = 414 Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 48/372 (12%), Positives = 98/372 (26%), Gaps = 58/372 (15%) Query: 20 KIIYY----FRKGHGRR------IRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 K YY + +R LP A + + + I Sbjct: 21 KGYYYAVLSYYDSKNKRHVKYISTGLPEKGNKRKAEAELVKIRNAFEPPAEIG-ELCSNM 79 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFD--YRKITTKHIRSGVESR 126 + + + + + S+ES Q I + + + +HI+ + Sbjct: 80 LFADYLLGWLEIVKVR-VKPTTFGSYESMVKQTIEPYFRNKPITLKDLEARHIQQFYSEK 138 Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 P+S I + + K+A++ + VA N + V+RPK+ ++Q Sbjct: 139 LKTVKPNSVIHYHAVIHQALKYAMKTDLVAQNVAMKVDRPKKNDFQPVFLDAAELQH-LF 197 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI----------------------- 221 +G++ L + GLR + + Sbjct: 198 DVVKGTKLELPVLVAAFYGLRRGEVLGLKWDAIDFERGTLTIKRTVTSVNVGGKTQVIEQ 257 Query: 222 -------FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK-------QKMNAT 267 G + L G + + ++M Sbjct: 258 ESAKTKSSMRTLPLVGRFREYFAEVKAAQELNKQVCGNCYNYEYDGFVFVDELGERMKTD 317 Query: 268 QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKG 325 + F A + G+ K H +R A++ G ++ G Y Sbjct: 318 YLTSQFPAFIQRHGMKKMRFHDLRHSCASLLLANGVPLKQIQDWLGHSDFSTTANIYAHL 377 Query: 326 ADRIRL-GIKNS 336 +L + Sbjct: 378 DYSSKLSSAQAM 389 >gi|1679807|emb|CAA96221.1| integrase [Haemophilus phage S2] Length = 337 Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 42/330 (12%), Positives = 91/330 (27%), Gaps = 28/330 (8%) Query: 12 TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP-TT 70 ++ T++GK + +G+R+R + + + Y A +T + + Sbjct: 3 VRKDTKNGKWLAEV-YVNGKRLRKWFLTKGDALRFYNQAKEQTTSAVDSVQVLESSDLPA 61 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---- 126 L + + E+ H +L+ + + + GD + + + R Sbjct: 62 LSFYVQEWFD-LHGKTLSDG--EARLAKLKNLCANLGDPPANEFNAEIFADYRKRRLDGE 118 Query: 127 -------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 ++ + +R +F L R ++ E + E Sbjct: 119 FSVNKNNPPKEATVNREHAYLRAVFNELKSLRKWTAENPLDGVRLFKERETELAFLYERD 178 Query: 180 QQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 + S+ L L +G R S++ + + K+ TV Sbjct: 179 IYRLLVECDNSRNPDLGLIVRICLATGARWSEAETLTQSQVMPYKITFTNTKSKKNRTVP 238 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296 + +L F + + H +R A+ Sbjct: 239 ISKELFDMLPKKRGRLFNDA---------YESFENAVLRAEIELPKGQLTHVLRHTFASH 289 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326 G L G T++ Y A Sbjct: 290 FMMNGGNILVLKEILGHSTIEMTMRYAHFA 319 >gi|145297530|ref|YP_001140371.1| phage integrase family protein [Aeromonas salmonicida subsp. salmonicida A449] gi|142850302|gb|ABO88623.1| phage integrase family protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 408 Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 50/324 (15%), Positives = 109/324 (33%), Gaps = 20/324 (6%) Query: 24 YFRKGHGRRIRLPYP------HESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77 Y G R I + Y L+ ++ +++ TL L Sbjct: 57 YLWHGRKRAIAIGRFPDVDLNTAREIATEYKRLLSQGIDPKQLKED-KRQELTLYELFQL 115 Query: 78 -YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAI 134 Y A + + + + D + G +I + ++ S + P++ Sbjct: 116 HYLPYAKHHKRS--WQNDEQRFRDHLQPPMGSRLLSEINLEQGQALQTSLMSQCKPATNN 173 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194 + T ++ + W+VR Y+ +P + ++ + R K ++++ Sbjct: 174 RITTLLKAILTWSVRMGYLEQHPLVYLKTLPENNQRTRFLDKAEIRRLFMAADADENRYA 233 Query: 195 AFEFLLY--SGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAMTPI 250 L +GLR + A +H+ I K G + + M++L TP+ Sbjct: 234 GQYVKLLLLTGLRKDELRLAKWEHIDKVHQTLFIPHTKNGKSRILHMNHMAMQVLQDTPV 293 Query: 251 GKETFFINNDKQKMNA-TQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHEL 307 ++ ++ + F +A + H R A + +G T +++ Sbjct: 294 IAGNAYLFPGQKPGQPLNNVTKPFNRMLKRAQIEGQVCIHTCRHSVAALIVSSGGTLYDV 353 Query: 308 MATYGWKTVDQAETYTK-GADRIR 330 A G + ++ Y A R+R Sbjct: 354 QAQLGHSSSQSSQRYAHLHASRLR 377 >gi|149200435|ref|ZP_01877450.1| phage integrase [Lentisphaera araneosa HTCC2155] gi|149200455|ref|ZP_01877470.1| phage integrase [Lentisphaera araneosa HTCC2155] gi|149136449|gb|EDM24887.1| phage integrase [Lentisphaera araneosa HTCC2155] gi|149136469|gb|EDM24907.1| phage integrase [Lentisphaera araneosa HTCC2155] Length = 294 Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 31/274 (11%), Positives = 84/274 (30%), Gaps = 24/274 (8%) Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-- 126 + + + + A ++ ++ ++ ++ + ++ Sbjct: 3 DSFQKYYRAMQLELKLQAKAKSTVDNYLRALRRVNDLIAS-PLDQLKEEELKLYFSELVD 61 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 ++ S+ ++ +++ +++E+ + R ++++ S Sbjct: 62 TYSWSTVKMDRCALSFFYQYVLKREWKWLEIVR----IPRVKSLPDILSQDETLLILSHL 117 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKL 244 + + R + GLR S+ R + + ++ K V LP ++ Sbjct: 118 EKA-RYRTCLTAIYSMGLRISEGVRIQTGDICKDRMRLHVRNSKGYKDRLVPLPQVTYQM 176 Query: 245 LAMTPIGKETFFINNDKQ------------KMNATQFSIWFKAKATKAGVNK--SAHGVR 290 L + + + M+ FKA +G+ K S H +R Sbjct: 177 LRDYWVIHRNPLLLFPRYAGKSRSNSKTTLHMDKGGVQSAFKAALADSGLAKQVSVHSLR 236 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324 AT +AG + G + Y+ Sbjct: 237 HSYATHLVEAGVNLRVIQEILGHSSPATTAIYSH 270 >gi|256829123|ref|YP_003157851.1| integrase family protein [Desulfomicrobium baculatum DSM 4028] gi|256578299|gb|ACU89435.1| integrase family protein [Desulfomicrobium baculatum DSM 4028] Length = 392 Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 57/379 (15%), Positives = 114/379 (30%), Gaps = 46/379 (12%) Query: 2 TPSLRLPPFVTKERTR-HGKIIYYFRKGHGRR----------IRLPYPHESTFIPAYMSA 50 + P V + +G+ YY R G R E+ A + Sbjct: 6 REKSKKYPGVYWRKNPENGEKTYYIRYRLGGRGSKEIEEPVGKSTSAMTEAKASQARAAR 65 Query: 51 LTGSTPKREYINSPRKKPT-------TLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103 +TG T + K T++ + EY + + A SY ++++ Sbjct: 66 MTGQTLPNTERRTQEKAAQEAITGRWTVQKIWDEYDDAHKDRACA----KPDASYANRLL 121 Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPS----------SAIQFLTSMRVLFKWAVRQEYV 153 + G+ +I T + + T S + L ++ + +WA ++ Sbjct: 122 PELGEKTPSEIVTLDLERLRRNLAKTKSPRTRKTLSAQTQKHVLALLKRMLRWAADMGHI 181 Query: 154 AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA--FEFLLYSGLRCSDSCR 211 L P E T++ + + E S A F L +G+R + Sbjct: 182 DPPVHLKFRMPTVDNEKTEFMTEDQLSAYLKALDEESNQHCAAFFRIALLTGIRRTALLN 241 Query: 212 AGVQHLQNNIFSIK---TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ 268 + + + + + +I + Sbjct: 242 VMWSDVDLENGFLTLRGATAKNEKTQTIPLSPGAVEVLKGIVRPNSPYIWPGQNGGARED 301 Query: 269 FSIWFKAKATKAGVNKSA---HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 + KAG+ HG+R A+ A +GA+ +E+ + + Y Sbjct: 302 MRRMGRRLRDKAGLPADFRPVHGLRHHFASHLASSGASLYEVGTLLTHGDLSVTKRYAHL 361 Query: 326 ADRIRLGIKNSRRISSVVD 344 +D+ RR +S+ D Sbjct: 362 SDQ------ALRRAASLAD 374 >gi|218134658|ref|ZP_03463462.1| hypothetical protein BACPEC_02561 [Bacteroides pectinophilus ATCC 43243] gi|217990043|gb|EEC56054.1| hypothetical protein BACPEC_02561 [Bacteroides pectinophilus ATCC 43243] Length = 282 Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 34/269 (12%), Positives = 85/269 (31%), Gaps = 18/269 (6%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---H 128 K + R A +L + + S +R G + +T + S + +++ Sbjct: 3 KDIFESIRNEAEKRNLRERTIQLYCSDVSYFLRWIG-KNVSDLTLEDAESFLTAKRLEGR 61 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +P + + ++++ L+K ++ + +++++ Sbjct: 62 SPETHNHYRSAIKFLYKKVLKIVWDDDTVPAMKRE----RNLPAVLSRDEINAIIDAT-P 116 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLA 246 + + + SGLR S+ + N ++ K L + LL Sbjct: 117 NLKHKAIIATMYSSGLRVSEVVHLHYDDISRTNMTIHVRETKGRIDRYTILSQKNLDLLT 176 Query: 247 MTPIGKETFFINNDKQKMNA-----TQFSIWFKAKATKAGV--NKSAHGVRKFSATISAD 299 + + +FK A AG+ + S+H R A+ + Sbjct: 177 EYWFKCGRPKDILFPSSWSGGYLDIASVNQFFKKSAKLAGINRHVSSHACRHSFASHLFE 236 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADR 328 +G + + G + Y +++ Sbjct: 237 SGTDIKYIQSLLGHVDPRSTDVYLHVSNK 265 >gi|312899212|ref|ZP_07758550.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecalis TX0470] gi|311293646|gb|EFQ72202.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecalis TX0470] Length = 384 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 52/385 (13%), Positives = 117/385 (30%), Gaps = 56/385 (14%) Query: 11 VTKERTRHGKIIYYFRK--------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62 + + + ++G+ +YF+ G + AL + + Sbjct: 4 IKQYQKKNGEKAWYFKTYLGTDPLTGKKKYTTKRGFRTQKEAK---IALARLEMEIQKNG 60 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122 P T + + + ++ + + + I+ G + KI+T + + Sbjct: 61 IPSSTNITFQEVAFMWLENYKNTVKESSYSRTEIIFRKHILPSFGKIEISKISTAYCQKI 120 Query: 123 VESRKHTPSSAIQ--FLTSMRVLFKW-----AVRQEYVAINPCLSVERPKRKTEGIRPWT 175 V + SS F+ + +FK+ Q V + + I+ +T Sbjct: 121 VNTWHSKGSSKQYPLFINYINQVFKFAINIGVTNQNPVINVIVPKNQDIITSEKKIKFYT 180 Query: 176 KEDMQQFKSFW------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------- 218 K+ +Q F + F L +SG R + L Sbjct: 181 KDQLQIFLKSIEQSESTYITIRDYTLFRLLAFSGCRIGELLALTWDDLNIKTGELQINKT 240 Query: 219 -----NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA------- 266 + S + + T+ L + +L + ++ + + + + Sbjct: 241 IAKSDHYYVSNTPKTKKSNRTLILDAKTITILKKWKLEQKKYLLKLGYTQPSRIFTNEEN 300 Query: 267 -----TQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA- 319 + + KA + HG R A++ AGA E+ G + Sbjct: 301 EFTINQAITDRYNIYRKKANLPNIGLHGFRHTHASLLYYAGADHKEVQERLGHANIKTTL 360 Query: 320 ETYTKGADRIRLGIKNSRRISSVVD 344 +TYT + + K + ++S + Sbjct: 361 DTYTHLTNDGK--EKTTEKLSKYIG 383 >gi|240146968|ref|ZP_04745569.1| phage integrase [Roseburia intestinalis L1-82] gi|257200880|gb|EEU99164.1| phage integrase [Roseburia intestinalis L1-82] Length = 360 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 65/358 (18%), Positives = 112/358 (31%), Gaps = 36/358 (10%) Query: 12 TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 ++ T+ ++ G + + ST A +++ +NS R L Sbjct: 4 KEKDTKKWTAQWFETNAKGEKKKRRKRGFSTKKEAL------EYERQKKLNSSRSMDMKL 57 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 + Y + L + + + II G+ +I+ I + Sbjct: 58 SEFMEVYFEDKQ-NELKERTMKNKRYMMEQHIIPYFGNQMMSEISASQIIQWQNEMQTKG 116 Query: 131 SSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERP-KRKTEGIRPWTKEDMQQFKSFW 186 S + LF A R + NPC V+R + + WT E+ QQF Sbjct: 117 FSESYLRMIQNQLTSLFTHASRIYDLHTNPCKKVKRMGNSDSRSLDFWTTEEYQQFIQTI 176 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------------- 232 G++ L FE L ++G R + + I KT Sbjct: 177 EPGTRYYLIFEILFWTGCRIGELLALTPADINFERNQISITKTYYRTERKDVITEPKTKQ 236 Query: 233 --ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGV 289 T+E+P+ + + G N + K KAGV K H + Sbjct: 237 SVRTIEIPEFLKQEIKQFIEGHYGMPENERLFPIVQEAVQHKMKQNMVKAGVKKIRVHDL 296 Query: 290 RKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGIKNSRRISSVVDSD 346 R + G + G K + TY L RRI+ ++D++ Sbjct: 297 RHSHVAYLINKGIEPILIKERLGHKDIRITLNTYGH------LYPNQQRRIADLLDNE 348 >gi|167644210|ref|YP_001681873.1| site-specific tyrosine recombinase XerC [Caulobacter sp. K31] gi|167346640|gb|ABZ69375.1| integrase family protein [Caulobacter sp. K31] Length = 306 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 47/285 (16%), Positives = 92/285 (32%), Gaps = 31/285 (10%) Query: 70 TLKWLISEYRKSA-HWGSLAVNSRISF----ESYFDQIIRKSGD----FDYRKITTKHIR 120 T + +S + + H + + ++ +Y + + R G+ D IT +R Sbjct: 4 TARAALSAWLEHLTHERRASPRTVRAYGDNVLAYLNFLERHRGEPQSVSDLGGITAAELR 63 Query: 121 SGVESRKH-----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 + + R+ +P S Q L+S+R ++ + V P+ K RP + Sbjct: 64 AYLAFRREGENGLSPRSLSQSLSSIRAFHRYLDHRLDTPNAAIGLVRGPRIKVGAPRPVS 123 Query: 176 KEDMQQFKSFWSEGS--------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227 ++ + S S + L GLR S+ + T Sbjct: 124 EDQAHGLIAEISLDSDREDWEVARDEAVLTLLWGCGLRISEGLSLLRRDAPLAESLRITG 183 Query: 228 KTGTIIT-------VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280 K G E D ++ L + F ++ + ++ Sbjct: 184 KGGKTRIVPVLDIVRERIDAYLAALPFALEPDDPLFRAKRGGPLSPRHVQATMQHLRSRL 243 Query: 281 GV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 G+ + H +R AT AGA + G ++ + YT Sbjct: 244 GLSDRATPHALRHSFATHLLGAGADLRSIQDLLGHASLSTTQRYT 288 >gi|282882640|ref|ZP_06291251.1| phage integrase family protein [Peptoniphilus lacrimalis 315-B] gi|281297516|gb|EFA90001.1| phage integrase family protein [Peptoniphilus lacrimalis 315-B] Length = 327 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 41/291 (14%), Positives = 92/291 (31%), Gaps = 14/291 (4%) Query: 45 PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR 104 L + + S ++K T+ + + + + + S ++S + ++ Sbjct: 23 EKLQEVLQYTLASYDVTESKQQKKTSEQNFVELFLSAKRIEGCSEKSLKYYKSTIEAMLD 82 Query: 105 KSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 + D ++I T IR E +K + + + F W ++Y+ +P Sbjct: 83 EL-KKDVKRIVTDDIREYLTEYQEKKKSSKVTIDNIRRILSSFFSWLEDEDYILKSPVRR 141 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220 + + K T ++ E ++ + +E + + L +G+R + + N Sbjct: 142 IHKVKTGTNIKETYSDEALELMRDNCTE-LRDLAIIDMLASTGMRVGEMVLLNRNDIDFN 200 Query: 221 IF-SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT------QFSIWF 273 I K V L + + + Sbjct: 201 ERECIVFGKGSKERVVYFDARTKIHLQNYLKSRTDDNPALFVSLKSPHERLKIGGVEVRL 260 Query: 274 KAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + K G+ H R+ AT++ D G +L G + +D Y Sbjct: 261 REYGKKLGLQKVHPHKFRRTLATMAIDKGMPIEQLQQLLGHRKIDTTLQYA 311 >gi|288799833|ref|ZP_06405292.1| tyrosine type site-specific recombinase [Prevotella sp. oral taxon 299 str. F0039] gi|288333081|gb|EFC71560.1| tyrosine type site-specific recombinase [Prevotella sp. oral taxon 299 str. F0039] Length = 362 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 60/350 (17%), Positives = 111/350 (31%), Gaps = 27/350 (7%) Query: 11 VTKERTRHGKIIYYFRK----GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 + + +G Y F K +I ++ + + A + + + Sbjct: 21 LYLDIYVNGTRSYEFLKLYLQPETSKIAKEKNKQTLLLADAIKAKRIVEIQTGEFRALKN 80 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 TL LI + + S ++ K D + KIT K + + Sbjct: 81 NKVTLMSLIESRLA------RKDSVIDKYLSKILRVYLKDKDIELSKITPKWVERFFDFL 134 Query: 127 KH-----------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 +H SSA + AV+ + + NPC V K + T Sbjct: 135 EHEFKSFIKKTPLKASSARLLGNRLSGALAEAVKMDIIKDNPCQKVRAIKAQESQRTYLT 194 Query: 176 KEDMQQFKSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234 +E++++ S E G + AF F +GLR SD + + + I + T Sbjct: 195 QEELKRLASTPYERGERVTKAFLFSCLTGLRFSDVSKLRWAEVSEDFKRITFVQKKTSGL 254 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292 L + + D + + + +AG+NK S H R Sbjct: 255 EYLDLSEGATKILKERKNNGGLVFYDLPRESGNA-GKLLNSWRVRAGINKKISFHTARHT 313 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342 AT+ + + G K + + Y K D+ + +I + Sbjct: 314 FATMLLTLDVDLYTVSKLLGHKDIKTTQIYAKIIDKKK--QDAVNKIPQL 361 >gi|223938389|ref|ZP_03630283.1| integrase family protein [bacterium Ellin514] gi|223892958|gb|EEF59425.1| integrase family protein [bacterium Ellin514] Length = 337 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 37/306 (12%), Positives = 91/306 (29%), Gaps = 40/306 (13%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVES 125 + I + ++ ++ ++ + + + R + Sbjct: 29 EKWIKTFLHHLAADRGASIYTQRNYRQTLVEFYGWHRKERGVEPAWENLHRDDFRGYLRF 88 Query: 126 RKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + ++ ++R +K+ +R V+ +P +V PK + + T + M + Sbjct: 89 LGRGNLSRAAIQLRFCALRTFYKFLIRHGVVSASPIKNVSLPKMEKRLPKFLTAQQMVEL 148 Query: 183 KSFWSEGS------------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 + + E + GLR S+ C Q + N + Sbjct: 149 LGAPLKPLATPKKKGPGRPISATVCYRDVAILETIYSCGLRISELCGLTAQDIDWNEQLV 208 Query: 225 KTQKT-GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM---------NATQFSIWFK 274 + + V + + + + E + + K Sbjct: 209 RVRGKGKKERQVPIGEPALTAIRNYWSTLEQSPGGGSPVFLGETEKAAALSPRVLQQRLK 268 Query: 275 AKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRL 331 AG++ + H +R AT DAGA + G + + YT + +R++ Sbjct: 269 KYLALAGLDPSLTPHKLRHSYATHMLDAGADLRSVQELLGHAHLITTQVYTHVSTERLKR 328 Query: 332 GIKNSR 337 ++ Sbjct: 329 AYDSAH 334 >gi|218532541|ref|YP_002423357.1| tyrosine recombinase XerC [Methylobacterium chloromethanicum CM4] gi|218524844|gb|ACK85429.1| tyrosine recombinase XerC [Methylobacterium chloromethanicum CM4] Length = 365 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 47/312 (15%), Positives = 95/312 (30%), Gaps = 35/312 (11%) Query: 71 LKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSG 122 L+ + +R++ A +A N+ ++E Q + + + +R+ Sbjct: 23 LRAAMRGWREALARERRMAANTVEAYERDLRQFLIHRAARSGTPTIAGLIALKPRDLRAF 82 Query: 123 VESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT---- 175 + +R+ S ++ L +R ++ R+ + ++ +V PK + RP Sbjct: 83 MAARRAEGIGGRSLMRMLAGLRSFARFLEREGHGSVAALGAVRSPKVERRLPRPLPISAA 142 Query: 176 -----KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCR--AGVQHLQNNIFSIKTQK 228 E ++ L SGLR S++ A + T K Sbjct: 143 LAMTAPETRPDDDRAPWVLARDAAVIALLYGSGLRISEALGLTARDAPMPGIDEVRVTGK 202 Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAG 281 G + V + + +A ++ A G Sbjct: 203 GGKVRAVPVLPAVAEAVAAYLSLCPHPLDPEGPLFVGVKGGPLSPRVVQYAVSALRGALG 262 Query: 282 VN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG---IKNS 336 + + H +R AT + G ++ + YTK D RL Sbjct: 263 LPESATPHALRHSFATHLLARRGELRAIQELLGHASLSTTQIYTK-VDAARLMSAFEDAH 321 Query: 337 RRISSVVDSDDP 348 R + S+ P Sbjct: 322 PRARRLPPSELP 333 >gi|315607201|ref|ZP_07882205.1| integrase [Prevotella buccae ATCC 33574] gi|315251255|gb|EFU31240.1| integrase [Prevotella buccae ATCC 33574] Length = 407 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 49/362 (13%), Positives = 97/362 (26%), Gaps = 28/362 (7%) Query: 1 MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60 M ++ + R + +Y K R + + Sbjct: 54 MVGKPKV--HIKHNRRKENLQLYLIAKPRTPAERQQNKETLELAAKIRAEREQQFKESML 111 Query: 61 -INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--------FDY 111 + + Y S L + ++ + Sbjct: 112 GYRLKKDRNINFLDYYQAYIDSYTKKDL-----RMIKIALNRFKDFLKEQYPLYEFSIKP 166 Query: 112 RKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169 IT + VE + A + + ++A+ E + +PC V + Sbjct: 167 DLITKDMMEYFVEYLQSRSVGEGAKSIYQRFKKVVRYAIDHEVMLKDPCKGVVCKVDEQI 226 Query: 170 GIRP---WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226 + + + +E R AF LY GLR D +++ +K Sbjct: 227 LRKDVLSMDEIQSLIQCHYDNENPNVRRAFILCLYCGLRFCDVKDLTYKNIDYTNHLLKF 286 Query: 227 QKTGTIITVELPDGFMKL---LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 ++ T + L L ++ + K +AG+N Sbjct: 287 EQNKTKGHSANSGVVIPLNNGLLSLIGEAPDDLDSSIFNLPSYESCCKSVKRWVKRAGIN 346 Query: 284 K--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 K S H R A + GA + + G + E YT+ D +L + + Sbjct: 347 KHISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVD--KLKEEAINSLPE 404 Query: 342 VV 343 + Sbjct: 405 LK 406 >gi|302391372|ref|YP_003827192.1| integrase family protein [Acetohalobium arabaticum DSM 5501] gi|302203449|gb|ADL12127.1| integrase family protein [Acetohalobium arabaticum DSM 5501] Length = 310 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 38/296 (12%), Positives = 96/296 (32%), Gaps = 39/296 (13%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG-------------DFDYRKIT---- 115 L+ ++ + A ++ ++E +R ++I Sbjct: 6 LMEDFLQWIEVEKGYADSTIKAYEYDILLFLRWYDGGEIIQGENKEDLKIKLKRIELENV 65 Query: 116 -----TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170 K + + ++ ++ + + S++ + + + + N + PK++ Sbjct: 66 TLEELRKFVVYLAQELDYSNTTRCRKIASLKSFWNYLCKVRKLTDNIASDLSLPKKEPTT 125 Query: 171 IRPWTKEDMQQFKSFWSEGSQ----PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226 ++++ Q E S+ + LLY+G+R S+ + + ++ Sbjct: 126 EIYLKQKEINQLFVAIDEISRNIIRDKSILAVLLYTGIRVSECINLNLSDIDLESRILRI 185 Query: 227 QKTG--TIITVELPDGFMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKA 277 K + + M + ++ I + ++N FK Sbjct: 186 VKGKGGKSRMIGINKELMPYIKDYLQKRQQVLIEGNPLFLSERGNRLNKRTLQYHFKRWV 245 Query: 278 TKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +AG+ + H R + GA+ E+ G K + + Y D+ RL Sbjct: 246 EEAGLPDEVTVHKCRHTFLSHLCQNGASLAEIKQISGHKNLASLQRYLHN-DQKRL 300 >gi|291522918|emb|CBK81211.1| Site-specific recombinase XerD [Coprococcus catus GD/7] Length = 282 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 37/274 (13%), Positives = 88/274 (32%), Gaps = 18/274 (6%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---H 128 K + R A +L + + S +R G + +T + S + +++ Sbjct: 3 KDIFESIRNEAEKRNLRERTIQLYCSDVSYFLRWIG-KNVSDLTLEDAESFLTAKRLEGR 61 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +P + + ++++ L+K ++ + +++++ Sbjct: 62 SPETHNHYRSAIKFLYKKVLKTVWDDDTVPAMKRE----RNLPAVLSRDEINAIIDAT-P 116 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLA 246 + + + SGLR S+ + N ++ K L + LL Sbjct: 117 NLKHKAIIATMYSSGLRVSEVVHLHYDDISRTNMTIHVRETKGRIDRYTILSQKNLDLLT 176 Query: 247 MTPIGKETFFINNDKQKMNA-----TQFSIWFKAKATKAGV--NKSAHGVRKFSATISAD 299 + + +FK A AG+ + S+H R A+ + Sbjct: 177 EYWYKCGRPKDILFPSSWSGGYLDIASVNQFFKKSAKLAGINRHVSSHACRHSFASHLFE 236 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 +G + + G + Y +++ LGI Sbjct: 237 SGTDIKYIQSLLGHVDPRSTDVYLHVSNKTLLGI 270 >gi|239908039|ref|YP_002954780.1| tyrosine recombinase XerC [Desulfovibrio magneticus RS-1] gi|239797905|dbj|BAH76894.1| tyrosine recombinase XerC [Desulfovibrio magneticus RS-1] Length = 308 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 44/279 (15%), Positives = 90/279 (32%), Gaps = 30/279 (10%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGVESRKH 128 + E+ + + + ++E Q G IT H+R + Sbjct: 1 MDEFLTALAAVKGYSPATVAAYEDDLAQFEAFLRGRGLGLDAPEAITRDHVRGFLAELHR 60 Query: 129 TPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW---------TK 176 ++ + L+++R FK+ ++++ +A +P ++ PK + G R T Sbjct: 61 RRAAKSSMGRKLSTLRGFFKYQLQKKRLAADPTAGLKNPKAERRGPRALNADEAVALVTP 120 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITV 235 + + E L SGLR S++ + L + + Sbjct: 121 PPAAPAADGSAAACRDLALAELLYGSGLRISEALGLDLDDLDLSQGIARVMGKGSKERLA 180 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDK---------QKMNATQFSIWFKAKATKAGV--NK 284 L D + L + + +++ Q + A A AG+ + Sbjct: 181 PLSDASRERLREYLRRRGELGPGPMELALFLGNRGGRLDRRQAARIVDALAKGAGLARHA 240 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 H +R AT ++GA + G + YT Sbjct: 241 HPHMLRHSFATHLLESGADLRSVQELLGHARLTTTTRYT 279 >gi|299148759|ref|ZP_07041821.1| integrase/recombinase [Bacteroides sp. 3_1_23] gi|301311646|ref|ZP_07217572.1| integrase/recombinase [Bacteroides sp. 20_3] gi|15072728|emb|CAC47935.1| TpnF protein [Bacteroides thetaiotaomicron] gi|298513520|gb|EFI37407.1| integrase/recombinase [Bacteroides sp. 3_1_23] gi|300830387|gb|EFK61031.1| integrase/recombinase [Bacteroides sp. 20_3] Length = 279 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 35/262 (13%), Positives = 85/262 (32%), Gaps = 9/262 (3%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-YRKITTKHIRSGVESRKHTPSS 132 ++ + K A N+ S++ Y ++ + +I I + + + Sbjct: 6 ILETFEKRLLMQRYAGNTIRSYKDYASIFLKHVSKYPSLEEIPLSDIEAFINEKVQNGKI 65 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 ++ + + K + + ++ + ++KE+++ + Sbjct: 66 SVSYQKGLVGAIKKMYELILDKKIQLDYLYPKRSFSKLPKFFSKEEVRNILDNTQ-NLKH 124 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--GTIITVELPDGFMKLLAMTPI 250 + + GLR S+ ++ ++++ I+ ++ V LPD + L Sbjct: 125 KAILMTIYSCGLRLSELLNLKIKDIKSSDGIIRIHQSKGNKDRIVSLPDKLLATLRHYYQ 184 Query: 251 GKETFFINNDKQK---MNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305 + + +K + + K KA V S H R AT +G Sbjct: 185 AFKPKEYLFEGEKGGKYSERSVQLILKKALIKANVQSEGSVHTGRHSYATHLIQSGIDIR 244 Query: 306 ELMATYGWKTVDQAETYTKGAD 327 + G + + YT D Sbjct: 245 IVKELLGHENIKTTMIYTHITD 266 >gi|15894453|ref|NP_347802.1| site-specific tyrosine recombinase XerC [Clostridium acetobutylicum ATCC 824] gi|15024091|gb|AAK79142.1|AE007632_7 Integrase/recombinase (xerD/xerC family) [Clostridium acetobutylicum ATCC 824] gi|325508584|gb|ADZ20220.1| site-specific tyrosine recombinase XerC [Clostridium acetobutylicum EA 2018] Length = 299 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 38/293 (12%), Positives = 105/293 (35%), Gaps = 31/293 (10%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRSG 122 ++ + Y K+ + +R + + R + D+ I + I+ Sbjct: 3 VEERLEMYEKNLLVK--SEGTRKQYLNDLKVWFRYMKNKKRQITKDEDFVNIDYREIKKF 60 Query: 123 VESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER---PKRKTEGIRPWTK 176 + ++ + + S+++ F++ +++ V NP +++ PK + + Sbjct: 61 INYLIKNGRAATTIRRKIISLKLFFQYLDQEKIVLDNPFDKIDKRDLPKIPKRLPKSLSI 120 Query: 177 EDMQQFKSFWSEGS--QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234 E+ ++ + + + + + L +G+R S+ V ++ I ++ Sbjct: 121 EECKRLINSVNSRNTIRDKCIIIIFLSTGMRLSELISLNVDNILEEEIRIIGKEN-KERV 179 Query: 235 VELPDGFMKLLAMTPIGKETF------FINNDKQKMNATQFSIWFKAKATKAGVNKS--- 285 V L D K++ + + F++ ++ + AG+ Sbjct: 180 VYLTDQAKKIVKLYIKQRPKNLKTKALFLSERNGRIARGTVQNAIRNAMYNAGIKGDNDV 239 Query: 286 -AHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKN 335 H +R AT+ +G +L G + V YT + ++++ ++ Sbjct: 240 LVHILRHTFATLLYQSGEVDLFQLQELLGHEDVSTTRIYTDVSKEQLKNAVEA 292 >gi|331266258|ref|YP_004325888.1| integrase/recombinase, phage integrase family protein [Streptococcus oralis Uo5] gi|326682930|emb|CBZ00547.1| integrase/recombinase, phage integrase family protein [Streptococcus oralis Uo5] Length = 321 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 35/293 (11%), Positives = 90/293 (30%), Gaps = 14/293 (4%) Query: 43 FIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI 102 F+ + +R ++ +K+ + L+ + + + + ++ + + Sbjct: 15 FLNNEQLLALRESLERHLVDGKKKQKHSNNNLLQLFITAKQVEGCSAKTIRYYQRTIENL 74 Query: 103 IRKSGDFDYRKITTKHIR----SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158 ++TT +R + + + ++ + F W ++EY+ NP Sbjct: 75 FHHI-KESVTQLTTDDLRSYLANYQSEKDCSKANLDNIRRILSSFFAWLEQEEYIIKNPI 133 Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218 +++ K + +T E ++ + E + + L +G+R + + + Sbjct: 134 RRIKKIKTEQTVKETYTDEHLEIMRD-NCENLRDLAMIDLLASTGMRVGELVQLNRSDID 192 Query: 219 NNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFINNDK------QKMNATQFSI 271 V L ++ Q++ I Sbjct: 193 FENRECVVFGKGKKERPVYFDARTKIHLRNYLNDRKDSHPALFVTLLGKAQRLGIAGVEI 252 Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + K G+ H R+ AT + D G ++ G +D Y Sbjct: 253 RLRKLGQKLGIQKVHPHKFRRTLATKAIDKGMPIEQVQKLLGHSKIDTTLAYA 305 >gi|253581279|ref|ZP_04858533.1| transposase [Ruminococcus sp. 5_1_39B_FAA] gi|251847433|gb|EES75410.1| transposase [Ruminococcus sp. 5_1_39BFAA] Length = 285 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 38/274 (13%), Positives = 97/274 (35%), Gaps = 18/274 (6%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---H 128 + + ++ R +A+ +L ++ ++ + + ++ D +TT + + +K Sbjct: 8 EEIFNQIRSAANKRNLKDSTIHAYCTSVAHFLNRTA-KDIDALTTDDVDIFLTEKKLSGI 66 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +P + + + +R +K +++ + + + TK ++ Sbjct: 67 SPETYNHYHSGIRFFYKKILKKNWDDDDIPRMKRD----RKLPTVLTKAEISAILDAT-P 121 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLA 246 + + + GLR S+ + N I+ K+ + L D +++L Sbjct: 122 NLKHKAMIATMYSGGLRVSEVTHLHYDDISRTNKTIHIRDGKSRSDRYTLLADRTLEILT 181 Query: 247 MTPIGKETFFINNDKQKMNATQFS-----IWFKAKATKAGV--NKSAHGVRKFSATISAD 299 + +F+ A +AG+ + S H +R A+ + Sbjct: 182 EYWFQCGRPRGILFPSSWTGDYLTKDSVIQFFRESAERAGIQKHVSTHCLRHSFASHLFE 241 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 +G + A G + E Y +++ LGI Sbjct: 242 SGCDIKYIQALLGHRDPKSTEIYLHVSNKTLLGI 275 >gi|27383115|ref|NP_774644.1| site-specific integrase/recombinase [Bradyrhizobium japonicum USDA 110] gi|27356289|dbj|BAC53269.1| blr8004 [Bradyrhizobium japonicum USDA 110] Length = 373 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 58/359 (16%), Positives = 110/359 (30%), Gaps = 41/359 (11%) Query: 12 TKERTRHGKI-IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 K+R G Y + + G+ ++ P FI +Y +A G T Sbjct: 11 VKKRLADGSTKTYRYHRATGKLLQ-GEPGSPEFIESYGAAARGQK------RPQTASSDT 63 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 L+ +Y+ S + LA ++ + + + G + + + Sbjct: 64 FAALVVKYKASEVFKLLADRTQSEYARLLKAVESEFGTLPSSALNDPDVLGDFLEYQDAV 123 Query: 131 SSAI------QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + A L + + WA ++ + N +R W E + F Sbjct: 124 AKASGAREADNRLAATSAMLTWAKDRKNIRFNHLRGFKRLHYADRSEILWLPEHVLAFMD 183 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII------TVELP 238 QP L ++ LR SD ++ ++ K+ + Sbjct: 184 KAEPELQPALILA--AHTALRESDLLGLKWTAYRDGCLVVRISKSRRNRGNGRLVDIPCT 241 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK----------SAH- 287 ++L P E ++ FS + AG++K S H Sbjct: 242 KSLRQMLDKMPRTSEYILTTRTNRRFKIRYFSRLWHETMVAAGIDKIKLEGVEEPVSLHF 301 Query: 288 -GVRKFSATISADAGATAHELMATYGWKTVD----QAETYTKGADRIRLGIKNSRRISS 341 +R + T+ ++AG T E+ G ++ E Y A L K + S Sbjct: 302 NDLRGTAITLLSEAGCTPQEIATITGH-SLKYVNHILEKY--LARTKGLARKAIEKFES 357 >gi|322420262|ref|YP_004199485.1| integrase family protein [Geobacter sp. M18] gi|320126649|gb|ADW14209.1| integrase family protein [Geobacter sp. M18] Length = 340 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 39/310 (12%), Positives = 80/310 (25%), Gaps = 10/310 (3%) Query: 33 IRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSR 92 + A + T L I + ++ W + + Sbjct: 25 KSTGKFTKKEAKHAEAMERQKMMEQASLTPQEIAARTLLSEAIEQVYQT-RWKNNKDG-K 82 Query: 93 ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVR 149 S ++I GD I +R + K ++ ++L ++ + ++ + Sbjct: 83 QSRTRAL-RLIELIGDVQVGAINEDVVRKIIFKLEATKVKSATVNRYLEVLKTILRYKRQ 141 Query: 150 QEYVAI--NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCS 207 + R K E + S Q E LL +G R S Sbjct: 142 EWDFIHLKKQPKGRIRVLSKPEEDKAIRLLRETDHCSRRHFYPQVADLVEILLDTGCRLS 201 Query: 208 DSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT 267 + + + I +P + + K A Sbjct: 202 EVLNLPYDDVNFDTNLISIWINKGDRPRSIPMTYRVRRILQERQKTNKKKPFSVTIYQAG 261 Query: 268 QFSIWFKAKAT-KAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 + W + + + H +R AT + G + + G ++ E Y A Sbjct: 262 KAWAWVRKEMKLERDTEFVLHALRHTCATRLVNKGVDLYVVKEWLGHSSIQVTERYAHLA 321 Query: 327 DRIRLGIKNS 336 L + Sbjct: 322 PDK-LAHAAA 330 >gi|253577473|ref|ZP_04854788.1| integrase [Paenibacillus sp. oral taxon 786 str. D14] gi|251843173|gb|EES71206.1| integrase [Paenibacillus sp. oral taxon 786 str. D14] Length = 326 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 37/278 (13%), Positives = 80/278 (28%), Gaps = 20/278 (7%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKIT----TKHIRSGVE 124 L+S + + +L + + + ++ + G + +T + I + Sbjct: 19 WSELVSLFLQDCRSRNLTNETIRRYRNGLKKLQQHLGSQNLKLNDLTDLLLSHRIIPSML 78 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQ 180 + L ++ FK+ N + K KT +T Sbjct: 79 DEGLALRTINCNLCILKEFFKFLYEDGIAEANIAAELRPLKVKTSLTHTFTDGHLQRLFV 138 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 Q G + + LL +G+R + V ++ + +++ + +P Sbjct: 139 QPDRSTFTGYRNYVIMLVLLETGIRLKELANLRVTNVFLDEGTLRIIQGKGRKARMVPIQ 198 Query: 241 FMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKA---GVNKSAHGVR 290 + + E ++ D + A GV S H R Sbjct: 199 HVAAFELKQYMFERGTLETDRLWVTLDNHPFYEAGIRVMISRYCIAANIQGVQCSCHTFR 258 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 A G L + G + ++ E Y + R Sbjct: 259 HTFAKKYLMNGGDVFTLKSILGHERIETTEMYVELFSR 296 >gi|307293564|ref|ZP_07573408.1| integrase family protein [Sphingobium chlorophenolicum L-1] gi|306879715|gb|EFN10932.1| integrase family protein [Sphingobium chlorophenolicum L-1] Length = 378 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 55/365 (15%), Positives = 100/365 (27%), Gaps = 26/365 (7%) Query: 1 MTPSLRLPPF-VTKERTRHGKIIYYFRK-GHGRRIRLPYPHESTFIPAYMSA------LT 52 + P +L +T ER+++G +Y G RI ES + + T Sbjct: 16 LAPGKKLAEHGITVERSQNGDAVYRINIMVDGERIHRVVGRESDGVTRQHAEDMIATLRT 75 Query: 53 GSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDY 111 + +R + RK K Y K + E + + G Sbjct: 76 RAREERLDLPKGRKIAIPFKEAAESYIKRLKEEG--GKTIERKERTLELYLTPALGTKPL 133 Query: 112 RKITTKHIRSGVESRKHTPS---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168 KIT+ + R + + + + + L+ AV +VA P + + Sbjct: 134 SKITSSDLAVYRAQRLKAGAKDATINREMAVVSHLYSKAVDWGWVAAKPKIIRAKEGDGR 193 Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228 + + L + +R S+ +HL + I Sbjct: 194 IAYLTPDQCARIIAAARNDLSPHIHPFCVIALSTSMRMSEVLSIKPEHLDFDKRRIFIPS 253 Query: 229 TGTIITVELPDGF-----MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 + L P E F N+ + + AG+N Sbjct: 254 AKAGQREQPMTKGLSDFLKAQLESLPDDAEWLFPNSASKSGRVMTIRKAHRRVVKAAGLN 313 Query: 284 ----KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 H R + T AG + G KT+ Y A+ + + Sbjct: 314 PDEVLR-HTFRHTAITHLVQAGVDLPTVQKVSGHKTLAMVARYAH-ANGEHI-DAAMDNL 370 Query: 340 SSVVD 344 + Sbjct: 371 EQRIA 375 >gi|120403198|ref|YP_953027.1| site-specific tyrosine recombinase XerC [Mycobacterium vanbaalenii PYR-1] gi|119956016|gb|ABM13021.1| tyrosine recombinase XerC subunit [Mycobacterium vanbaalenii PYR-1] Length = 319 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 93/302 (30%), Gaps = 39/302 (12%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSG---VESRK 127 EY + ++R ++ + + R +T +RS + Sbjct: 27 FDEYLALE--RGRSEHTRRAYLGDVRALFDFLAERRPGTGLRGLTLPVLRSWLAAQATAG 84 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S+ + ++++ WAVR+ + +P ++ PK + ++ ++ Sbjct: 85 AARSTLARRTSAVKTFTAWAVRRGLMTEDPAARLQVPKARRTLPSVLRQDQAREAMDAAK 144 Query: 188 EG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP 238 G + RL E L +G+R S+ C + + ++ K TV Sbjct: 145 SGAQQGDPLALRDRLIVEMLYATGIRVSELCGLDIDDVDTARRLLRVLGKGNKQRTVPYG 204 Query: 239 DGFMKLLAMTPIGKETFFINN----------DKQKMNATQFSIWFKA--KATKAGVNKSA 286 D L + +++ Q A + Sbjct: 205 DPAHAALTAWLSDGRPALVTAGSGAALLLGARGGRLDPRQARTVVHQTMAAVSGAPDIGP 264 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346 HG+R +AT + GA + G ++ + YT R+ +V D Sbjct: 265 HGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVT---------VARLRAVHDQA 315 Query: 347 DP 348 P Sbjct: 316 HP 317 >gi|95929339|ref|ZP_01312082.1| phage integrase [Desulfuromonas acetoxidans DSM 684] gi|95134455|gb|EAT16111.1| phage integrase [Desulfuromonas acetoxidans DSM 684] Length = 297 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 46/284 (16%), Positives = 94/284 (33%), Gaps = 24/284 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG-------DFDYRKITTKHIRSGVES 125 + E+ + +LA +++ ++ + +R + Sbjct: 4 WLDEFSRYLSVERNLASHTQTAYLRDVQAFCDFICGEHREQLKTLLPAVEKHTLRRWMAQ 63 Query: 126 R--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + + + + S+R + + RQ +V NP L V P+ + + M Sbjct: 64 LLKNNKKVTVARKVASIRSFYSFLQRQGHVEHNPALQVRLPRVERYLPTTLDVDYMYHLL 123 Query: 184 SFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP 238 + + + R AFE L SGLR + V L + ++ K G V + Sbjct: 124 DAPGDSTLQSLRDRAAFELLYSSGLRVGELVALNVADLDFDQALVRVLGKGGKQRIVPVG 183 Query: 239 DGFMKLLAMTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVR 290 ++ L + N +++A K K + G+ + H +R Sbjct: 184 SKALQALMAYLERRGVTERDEPLLVNRQGTRLSARTVQRNLKKKLLQLGLPTTATPHSLR 243 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334 AT D GA + G +++ + YT R+ + Sbjct: 244 HSFATHLLDEGADLRAIQEMLGHQSLSTTQKYT-QVSTDRMMKE 286 >gi|307691640|ref|ZP_07633877.1| hypothetical protein RbacD_01570 [Ruminococcaceae bacterium D16] Length = 357 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 49/358 (13%), Positives = 109/358 (30%), Gaps = 41/358 (11%) Query: 12 TKERTRHGKIIYYF--RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 +E+T + +Y + G ++ + A+ + + + Sbjct: 5 KEEKTNTWRAVYRYTDWNGERKQTQKRGFKTKREAQAW--------EREQLNKTSADLDM 56 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR-- 126 T K + Y L N+ + + +++ G IT + I + Sbjct: 57 TFKSFVDLYTADMKTR-LKENTWATKDHIIRTKLLPYFGRLKMCNITAQQIITWQNEMLN 115 Query: 127 -------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP-KRKTEGIRPWTKED 178 ++P + +F AVR + NPC K+K + WTKE Sbjct: 116 HKDENGKPYSPVYLKTVHNQLSAIFNHAVRYYNLRENPCKKAGSMGKKKKREMMFWTKEQ 175 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------ 232 +F + AFE L + G+R + ++ K+ Sbjct: 176 YLKFAEVMMDKPLSFYAFEMLYWCGIREGELLALTPADFDFEKRTVTINKSYQRLNGQDL 235 Query: 233 ----------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 + +P + + ++ + + A +AGV Sbjct: 236 ITTPKTEKSNRVITMPQFLAEEIQDYIKMLYGIGPDDRMFTITKSYLQREMDRGAKEAGV 295 Query: 283 NK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 + H +R + ++ D G +A + G +++D Y + + + ++ Sbjct: 296 PRIRIHDIRHSAVSLLIDMGFSATAIADRVGHESIDITYNYAHLFPSKQ--AEMADKL 351 >gi|146301334|ref|YP_001195925.1| phage integrase family protein [Flavobacterium johnsoniae UW101] gi|146155752|gb|ABQ06606.1| Bacteroides conjugative transposon integrase-like protein [Flavobacterium johnsoniae UW101] Length = 419 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 39/282 (13%), Positives = 86/282 (30%), Gaps = 16/282 (5%) Query: 80 KSAHWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKHTP------- 130 + + + RI++E + ++ G ++ +I ++ P Sbjct: 138 AAKRHNRSSKSIRINWER-LAEFLKSFSNGSLNFSQIDSRMAEDFKLFLLGAPQGGGKKG 196 Query: 131 ----SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 ++A + + K A Y+ ++ ++ + T E++ S Sbjct: 197 TISRNTAGTYFAIFKAAVKQAFIDGYLTVDLSSKIKGIPEEESRREYLTIEELNALASTD 256 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246 E + A F +GLR SD + + + K T + Sbjct: 257 CEKDVLKRAALFSALTGLRHSDIQKLRWKEIAVEDGMAKLHFTQKKTKGVEYMPISQQAL 316 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304 + + + S K AG+ K + H R AT+ +G Sbjct: 317 QLCGEPRLPGQLVFEDLPDPSWISRPLKKWVLSAGIKKNITFHCFRHTFATLQLSSGTDI 376 Query: 305 HELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346 + + G V + Y K D + + ++ S+ + Sbjct: 377 YTVSKMLGHTNVKTTQIYAKVVDEKKNKASEAIQLVSLKKKE 418 >gi|325300611|ref|YP_004260528.1| integrase family protein [Bacteroides salanitronis DSM 18170] gi|324320164|gb|ADY38055.1| integrase family protein [Bacteroides salanitronis DSM 18170] Length = 410 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 40/296 (13%), Positives = 90/296 (30%), Gaps = 24/296 (8%) Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFES------YFDQIIR-KSGDFDY--RKITTKHI 119 TT +Y + + ++ +F+ ++ K G D ++T I Sbjct: 107 TTFLDFYGKYLEDIKAQVGKGKTLATYHKYSAAGKHFENFLKLKYGRKDIMPSELTHVII 166 Query: 120 RSGVESRKH----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 + P+SA + L + + +A + + +P ++ T Sbjct: 167 HDFDIYLRTVVSLKPNSATKTLKFFKTVVIFAQKCGVLTHDPFAQHRF-HLESVDRGFLT 225 Query: 176 KEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 +++ + + R F F + GL D ++ Sbjct: 226 DDEITRIMEKEFSTPRLESVRDIFIFSCFCGLAYIDVANLTQDNIVTLDGKKWIMTRRQK 285 Query: 233 ITVELPDGFMKL-LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGV 289 VE + + L + K ++ + + + K A G+ K H Sbjct: 286 THVESNILLLDIPLMIINKYKGKTKDGKLLPILSNQKMNAYLKEIADLCGIKKRLTYHLA 345 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN-SRRISSVVD 344 R AT+ G + G + + Y + ++ I++ +S +D Sbjct: 346 RHTFATMMLSKGVPVESVSKMLGHANIKTTQIYARITNKK---IEHDMMNLSEKLD 398 >gi|238760177|ref|ZP_04621324.1| Tyrosine recombinase [Yersinia aldovae ATCC 35236] gi|238701613|gb|EEP94183.1| Tyrosine recombinase [Yersinia aldovae ATCC 35236] Length = 263 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 43/245 (17%), Positives = 81/245 (33%), Gaps = 17/245 (6%) Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 + G ++ + +RS V K SS L+++R W V Q + NP Sbjct: 5 EQMGLAHWQTLDAAQVRSLVSRSKRAGLHASSLALRLSALRSFLDWMVSQGVLQANPARG 64 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHL 217 V P+ + +++ + + R E + +GLR S+ +H+ Sbjct: 65 VSTPRSGRHLPKNIDVDEVDKLLDIDLNDPLAVRDRAMLEVMYGAGLRLSELVGMNCKHV 124 Query: 218 Q-NNIFSIKTQKTGTIITVELPDGFMKLLAMT-------PIGKETFFINNDKQKMNATQF 269 + K + + +K LA + F+ N ++++A Sbjct: 125 DLASGEVWVMGKGSKERKLPIGRTAVKWLAHWLELRELFEPQDDAIFLANTGKRISARNV 184 Query: 270 SIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 F K GV + H +R AT ++ + G + + YT D Sbjct: 185 QKRFAEWGVKQGVSSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTH-LD 243 Query: 328 RIRLG 332 L Sbjct: 244 FQHLA 248 >gi|119896887|ref|YP_932100.1| site-specific recombinase [Azoarcus sp. BH72] gi|119669300|emb|CAL93213.1| site-specific recombinase [Azoarcus sp. BH72] Length = 303 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 43/277 (15%), Positives = 81/277 (29%), Gaps = 20/277 (7%) Query: 75 ISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TP 130 Y A + ++ ++ R + IR V + Sbjct: 16 CEAYLAYLGDQRRAAPLTLENYRRDLHRLERLGDGRALMTLGAADIRRFVARLHGEGLSG 75 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 S + L+ R L++W +R+ + NP + PK R + + Q +E + Sbjct: 76 RSIARVLSCWRGLYRWLLRRRLIPANPVDGIRAPKSPRLLPRALSPDQAQALLDPPAEAA 135 Query: 191 ---QPRLAFEFLLYSGLRCSDSCR--AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 + FE SGLR S+ G K G +V + L Sbjct: 136 LEVRDLAMFELFYSSGLRLSELAGLDVGGGLDPAEGMVTVLGKRGKTRSVPVGAHAWAAL 195 Query: 246 AMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATK--AGVNKSAHGVRKFSAT 295 + + ++M+ + +A GV+ H +R A+ Sbjct: 196 KAWDTVRAAIAPAAEPALFVTRSGRRMSPSAIRDRLARRARSVGLGVHVHPHMLRHSFAS 255 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 + + G ++ + YT D L Sbjct: 256 HLLQSSGDLRAVQELLGHSSIRSTQVYTH-LDFQHLA 291 >gi|296113698|ref|YP_003627636.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis RH4] gi|295921392|gb|ADG61743.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis RH4] gi|326562438|gb|EGE12757.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis 7169] gi|326569146|gb|EGE19208.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis BC1] Length = 330 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 36/278 (12%), Positives = 89/278 (32%), Gaps = 31/278 (11%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYR----KITTKHIRSGVESRK 127 + + + ++ ++++ Q G +T + +E K Sbjct: 30 WCDELRLQNYSKHTITTYQTALIQFFNFLESDNYLGGDPLACRRQDLTR-FFSTRLEEEK 88 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI--------RPWTKEDM 179 P SA L+++R+ +++ ++Q +A+NP + + + + Sbjct: 89 IKPISAKLSLSAIRIFYQFLIKQGVIAVNPTTGYKIKSAPRKLPTVADELLIKQLLDQKT 148 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----------QKT 229 + + + + FE + SGLR S+ + + +I ++ Sbjct: 149 PEDTAKACLWIRDKAMFELMYSSGLRLSELAGLNMGDVNFDIGIVRVLGKGNKTRQVPVG 208 Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AH 287 + + L K F +++ + K AT AG+ + H Sbjct: 209 KKAMIALQDYLPHRNLWQKKNCKALFISERHGTRLSTRAIQLRLKVCATMAGIELNMYPH 268 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 +R A+ + + G + + + YT Sbjct: 269 LLRHCFASHVLSSSGDLRAIQEMLGHQNISTTQIYTHV 306 >gi|260219998|emb|CBA27096.1| Tyrosine recombinase xerC 1 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 321 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 45/317 (14%), Positives = 83/317 (26%), Gaps = 41/317 (12%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKH 128 L+ +Y + LA + + ++ ++ R + HIR V Sbjct: 6 SALVEKYLEFVRVEKRLAARTVELYSLDLGRLSEQATRAGVTMRDVRNHHIRRWVAQMHS 65 Query: 129 TPSS---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT-----KEDMQ 180 S L+ R + W R+ V+ NP V PK + + Sbjct: 66 AGRSGRGIALILSGWRGFYAWLGREGLVSSNPVQDVRSPKAPKPLPKALAVDDAVQFADF 125 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCR--------AGVQHLQNNIFSIKTQKTGTI 232 + ++ E L SGLR + A + K Sbjct: 126 ESYDNAWLEARDAAIVELLYGSGLRVGELVGLDVVAGKDAKGWIDMQAAEAHVLGKGSKR 185 Query: 233 ITVELPDGFMKLLAMT-------------------PIGKETFFINNDKQKMNATQFSIWF 273 +V + M+ L F + ++ A Sbjct: 186 RSVPVGATAMQALQRWLELRGPSGTATAAPVDAAAAHAASALFTGRNGTRLTAQSVWQRL 245 Query: 274 KAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 K ++ AG+ H +R A+ + + G + + YT+ D L Sbjct: 246 KRRSQLAGLNVPVHPHMLRHSFASHVLQSSGDLRGVQELLGHANITTTQVYTR-LDFQHL 304 Query: 332 GIKNSRRISSVVDSDDP 348 +P Sbjct: 305 AKAYDAAHPRAKLKREP 321 >gi|327395064|dbj|BAK12486.1| tyrosine recombinase XerD [Pantoea ananatis AJ13355] Length = 220 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 40/215 (18%), Positives = 74/215 (34%), Gaps = 19/215 (8%) Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG----SQPRLA 195 MR LF++ R++ +P + PK + ++ + + + + Sbjct: 1 MRRLFQYLYREKMRTDDPSAMLAAPKLPQRLPKDLSEAQVDRLLQAPDVNVPLELRDKAM 60 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKET 254 E L +GLR S+ + + ++ V L + + L Sbjct: 61 LELLYATGLRVSELVGLTLNDVSLRQGVVRVIGKGNKERLVPLGEEAVHWLEYYMEHGRP 120 Query: 255 F----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301 + F +N Q+M F K A AG++ S H +R AT + G Sbjct: 121 WLLNGQTLDVFFPSNRAQQMTRQTFWHRIKHYAMLAGIDSEKLSPHVLRHAFATHLLNHG 180 Query: 302 ATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKN 335 A + G + + YT A +R+RL + Sbjct: 181 ADLRVVQMLLGHSDLSTTQIYTHVATERLRLLHQQ 215 >gi|320652975|gb|EFX21175.1| putative integrase [Escherichia coli O55:H7 str. 3256-97 TW 07815] Length = 309 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 45/304 (14%), Positives = 90/304 (29%), Gaps = 18/304 (5%) Query: 28 GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87 G+RIR + Y + E+ + + L LI + K Sbjct: 6 RKGKRIR-KKFKTKSDAVLYERWVLAQQHNNEWKGNSIDRRP-LSVLIDLWWKYHGQLMK 63 Query: 88 A-VNSRISFESYFDQIIRKSGDFDYRKITTKH---IRSGVESRKHTPSSAIQFLTSMRVL 143 + N+ ++ D K+ T +R + PS+ + + ++ + Sbjct: 64 SGHNT----RLKLLRLSEAMDDPCVHKLNTTMLTELRVSRIEQGIQPSTINREIGALSAM 119 Query: 144 FK-WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202 F ++ NP ++ K + +K + Q +E RLA E LL + Sbjct: 120 FTALISSGHFLNDNPVQGLKGMKVNEREMGYLSKSECVQLLDALAENPDERLAVEILLST 179 Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262 G R + + + + + K TV + + + + ++ Sbjct: 180 GARWGEVAVLEQRRVLHCRITFSKTKNSKNRTVPISESLFEKIKKRGGKLVFPTLDYPL- 238 Query: 263 KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 K A ++ H +R A+ G L G + Y Sbjct: 239 ------VRDVIKTVAPDVPDGQAVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIY 292 Query: 323 TKGA 326 A Sbjct: 293 AHLA 296 >gi|320352610|ref|YP_004193949.1| integrase family protein [Desulfobulbus propionicus DSM 2032] gi|320121112|gb|ADW16658.1| integrase family protein [Desulfobulbus propionicus DSM 2032] Length = 387 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 46/328 (14%), Positives = 92/328 (28%), Gaps = 16/328 (4%) Query: 11 VTKERTRHGKIIYYFRKGHGR--RIRLPYPHESTFIPAYMSALTGST-----PKREYINS 63 + + K ++K G+ R+ + E T A A Sbjct: 36 LVQITESGRKTFQLYKKHMGKPIRVTIGTFPELTVEQARKKAREIKVSLTNGENPNDKLK 95 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 +++ T L Y + + E+YF + + G IT I + Sbjct: 96 QQRQEMTFADLFEIYLERHAKPRKK--TWREDETYFKRHLASFGKKRLSTITKGDIAAIH 153 Query: 124 ESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 S K P+ A + L + + + + + R + +++ +F Sbjct: 154 SSIGKDRPTHANRVLALVSSIIGRGIEYGLYESLNPCRGIKKFSEQARDRFLSGDELARF 213 Query: 183 KSF--WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 S R F L +G R ++ L + +T +P Sbjct: 214 FQALEQEPNSTARDFFLVALLTGARRANVLSMRWSDLDLKGQIWRIAETKNGTPQNVPLV 273 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQF---SIWFKAKATKAGVNK-SAHGVRKFSATI 296 L + K T ++ AG+ H +R+ + Sbjct: 274 GPVLEILQDRRKATSSFFVFPGPGKTGHLVEPKKAWQRICQAAGIKGARIHDLRRTMGSW 333 Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324 A GA+ + + K+ Y + Sbjct: 334 QAKTGASLPIIGKSLNHKSASTTSIYAR 361 >gi|167767979|ref|ZP_02440032.1| hypothetical protein CLOSS21_02522 [Clostridium sp. SS2/1] gi|167710308|gb|EDS20887.1| hypothetical protein CLOSS21_02522 [Clostridium sp. SS2/1] Length = 372 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 39/273 (14%), Positives = 89/273 (32%), Gaps = 13/273 (4%) Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVE 124 +L L + + + + + + + Q + D + I IR + + Sbjct: 91 DSLGKLKDMFLATLIVENKSNRTIEQYNLHLTQFVNYFTGKDAKDIDATGIRSFLYAYKK 150 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 +R + S +++ F W V +EY+ +P +++ K + + +T ++M++ + Sbjct: 151 NRGISNLSLNNKRSAISSFFSWLVDEEYIDKDPTRKIKKIKVTKKKKKAFTADEMERMRI 210 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243 + + R E L +G R S+ + + ++ TV + D M Sbjct: 211 ACT-DIRDRALIEMLACTGCRVSELSNISLNDVDFLRKKVRIVGKGDKERTVFISDTAMI 269 Query: 244 LLAMTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATIS 297 L ++ I ++ + V H R+ T Sbjct: 270 YLNRYLETRQDNNIALFVSKRFPYDRLRKDGIERVVRDLGRMCNVYAHPHKFRRTLCTNL 329 Query: 298 ADAGATAHELMATYGWKTVDQAE-TYTKGADRI 329 G + G ++ Y +DR Sbjct: 330 IMRGMPLQNVAILMGHADINMTANVYYDASDRA 362 >gi|160887392|ref|ZP_02068395.1| hypothetical protein BACOVA_05411 [Bacteroides ovatus ATCC 8483] gi|156107803|gb|EDO09548.1| hypothetical protein BACOVA_05411 [Bacteroides ovatus ATCC 8483] Length = 420 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 96/302 (31%), Gaps = 18/302 (5%) Query: 46 AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESY--FDQII 103 Y SA+ + + E + + S + + + +++ ++ Sbjct: 106 EYDSAILYTDKENEIAAQNERSEQDFIKYFNG-IISTRHPNSSDSIIVNWRRVGELLKMY 164 Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTP-----------SSAIQFLTSMRVLFKWAVRQEY 152 + ++ I+ K + P ++A + + ++ K A EY Sbjct: 165 SQGEPIPFKAISVKLLEDIKMFLLRAPMGGNKKGTISQNTASTYFSILKAGLKQAFIDEY 224 Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212 + ++ V+ + T ++Q + + AF F + +GLR SD Sbjct: 225 LTVDISAKVKGITNIEKPRVALTMNEVQMLVDTPCKDDVLKRAFLFSILTGLRHSDIQTL 284 Query: 213 GVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS 270 + +Q + + L + I + + +A+ S Sbjct: 285 KWKQIQQTSKGTWQAVVIQQKTKRPDYKPVIQQALQLCGIRPDDDEALVFEGLTDASWIS 344 Query: 271 IWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 K +G+ K + H R A++ + G + + + G V + YT + Sbjct: 345 RPLKVWIEASGIKKHITFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHIVNE 404 Query: 329 IR 330 + Sbjct: 405 QK 406 >gi|194432422|ref|ZP_03064709.1| integrase [Shigella dysenteriae 1012] gi|194419309|gb|EDX35391.1| integrase [Shigella dysenteriae 1012] gi|332095959|gb|EGJ00966.1| integrase [Shigella dysenteriae 155-74] Length = 357 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 60/345 (17%), Positives = 109/345 (31%), Gaps = 23/345 (6%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63 LPP + R+ Y G+ L A + + + Sbjct: 9 RRDLPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELLSDSGRESLI 65 Query: 64 PR---KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 R TL + Y + + + + S I RK D I+TK + Sbjct: 66 DRIKGADSITLHAWLDRYETILSERGIRPKTLLDYASKIRAIRRKLPDKPLTDISTKEVA 125 Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + + + +SA +++ +F+ A+ + +VA NP + K + R E Sbjct: 126 AMLNTYVAEGKAASAKLIRSTLVDVFREAIAEGHVATNPVTATRTAKSEVRRSRLTANEY 185 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 ++ + + RLA + + +G R D CR + +N I+ KTG + + L Sbjct: 186 VEIYHAAEPLPIWLRLAMDLAVITGQRVGDLCRMKWSDINDNHLHIEQGKTGAKLAIPLT 245 Query: 239 DGFMKL---------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NK 284 L ET + ++ S +F +G+ Sbjct: 246 LTIDALNISLVDTLQKCREASSSETIIASKHHDPLSPKTVSKYFTKARNASGLSFDGDPP 305 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + H +R SA G K+ A Y R Sbjct: 306 TFHELRSLSA-RLYRNQIGDKFAQRLLGHKSDSMAARYRDSRGRE 349 >gi|297183673|gb|ADI19798.1| site-specific recombinase xerd [uncultured alpha proteobacterium EB000_37G09] Length = 302 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 48/280 (17%), Positives = 93/280 (33%), Gaps = 23/280 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHT 129 LI+ + + ++ N+ +++ + + +T IR V+ Sbjct: 9 LITHFLSALAAERGVSENTLFGYKNDLMALHDSMA-VSFVVMTADDIRQSVQKFYIEGLA 67 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + + L+++R W V NP L ++ PK + + D+ + S+ Sbjct: 68 ARTVSRRLSAVRQFAGWMVSDHIRQDNPSLFLDNPKLPDPLPKSLNEADVSSLITACSKL 127 Query: 190 SQPRLAFEF-----LLYSGLRCSDSCRAG-VQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 P + +GLR S+ + + K G V L + Sbjct: 128 EPPYDLLMQAGLELMYSAGLRISELLSLRLQDFTADKDMLLIRGKGGRERMVPLTAIAIA 187 Query: 244 LLAMTPIGKETFFIN--------NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKF 292 ++ + Q+M +FS+ K A A ++ SAH +R Sbjct: 188 TARRWRDARDADGPDAETDQLLGYRSQEMTRQKFSLLLKQVARHADLDERKVSAHVLRHS 247 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 AT + GA L G + + YT+ + RL Sbjct: 248 FATHLLNRGADLRSLQMLLGHADIATTQIYTRT-RQDRLA 286 >gi|194396828|ref|YP_002037966.1| integrase [Streptococcus pneumoniae G54] gi|307127259|ref|YP_003879290.1| tyrosine recombinase [Streptococcus pneumoniae 670-6B] gi|194356495|gb|ACF54943.1| integrase [Streptococcus pneumoniae G54] gi|295980935|emb|CBJ57183.1| hypothetical protein [Streptococcus pneumoniae] gi|306484321|gb|ADM91190.1| tyrosine recombinase [Streptococcus pneumoniae 670-6B] Length = 298 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 37/281 (13%), Positives = 88/281 (31%), Gaps = 37/281 (13%) Query: 74 LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSGVESRKHT 129 LIS Y L+ ++ ++++ Q + D ++T +I Sbjct: 5 LISTYLDYCKTHKRLSSHTIRAYKNDLMQFYNSNYDNVESYIEELTQSNI---------K 55 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER-PKRKTEGIRPWTKEDMQQFK----- 183 ++ + + ++V + + Q + NP + + + + + ++ Sbjct: 56 TNTLRRKIACIKVFYNYLKYQHIIEENPFNQLRFQFRTEKILPKTIPYDILKNIFSYLEQ 115 Query: 184 --------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTII 233 + + L LL +G+R S+ C ++ + N I + I Sbjct: 116 RVVISKTDYQKQKAERNLLIISLLLSTGIRISELCHIHLKDINLSNKTLHIIGKGKKERI 175 Query: 234 TVELPDGFMKLLAMTPI------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-- 285 LL F + + ++ + K + G++K+ Sbjct: 176 LFLGDQTTFNLLETYINKNGKESNDFLFPGKHSPKPLSEQSVRLILKRIVEQNGLSKTIT 235 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 H R AT+ D + G ++ + YT + Sbjct: 236 PHMFRHSFATMLLDNDVDIRYIQQILGHSSISITQIYTHVS 276 >gi|256587797|gb|ACU98929.1| integrase [Propionibacterium jensenii] Length = 305 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 41/292 (14%), Positives = 98/292 (33%), Gaps = 29/292 (9%) Query: 75 ISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSGVESRK--- 127 + ++ + + ++ + + + + D +I +RS + + Sbjct: 11 LEDFCVHLRADLRRSPRTVTAYRTDLESLFDHAADNGVTRLAEIDVSALRSWLADGRGAA 70 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185 P++ + S RV F+WA + + ++P ++ K R + ++ Sbjct: 71 EAPATLQRHWASARVFFRWACAEGLIGVDPAARLKAAKVPRRLPRTLGVDQARRLLDDAV 130 Query: 186 -------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL 237 +G++ E L SG+R + C + L +++ K TV L Sbjct: 131 ASASTDDSPQGARDAAILEVLYGSGIRVGELCGLDLSSLDRARDTLRVLGKGSKERTVPL 190 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWFKAKAT-KAGVN-KSA 286 D + + + + + Q +++ + G Sbjct: 191 GDPGWRAIDGWLSRRSEWQTASSGQALFLGARGARIDPRVVRRMVHQHLRSEPGFPDLGP 250 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337 HG+R AT + GA + G +++ + YT + +R+R + Sbjct: 251 HGLRHAMATHLLEGGADLRTVQEILGHESLATTQIYTHVSTERLRRAFNQAH 302 >gi|251780250|ref|ZP_04823170.1| phage integrase [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084565|gb|EES50455.1| phage integrase [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 391 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 48/373 (12%), Positives = 111/373 (29%), Gaps = 56/373 (15%) Query: 11 VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 + K++ ++GK Y+ R H + + T + I + + T Sbjct: 5 IYKKKLKNGKEYYFHRLRHKNLRKPKDIYAKTVKELEEKIKLITHDLDYNIQNNKDCFET 64 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVE---S 125 S++ H+ L ++++ +E+ + I+ + D ++IT+K I++ Sbjct: 65 F---FSDWLFDVHFMGLKPSTQMRYETIYRNHIKNSELSDIKIKEITSKDIQTYYNNKIK 121 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 R + + + ++A ++ N ++ PK + + Sbjct: 122 RGCSVTLVKSIHKIITPCIRYAYNNNFIIKNFTSALILPKETEKDKLNKKSSVIPFTLEE 181 Query: 186 W------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII------ 233 G++ + F L SGLR + + + I K +++ Sbjct: 182 QKKFISVIRGNKFEMIFLTALNSGLREGELLALTWKDINFKDKYINVNKNLSVVTEISKE 241 Query: 234 ----------------------------------TVELPDGFMKLLAMTPIGKETFFINN 259 + + F + Sbjct: 242 NGRGGSTLEVQTPKTKKGIRKVSIPSFLATALKQYKKQQIKNRLKMNQFYNDNNLVFCDE 301 Query: 260 DKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 +N + FK + H +R AT + G +A + + G + Sbjct: 302 LGNYLNRDKIVYRFKKVLEDNKMKEIKFHDLRHTYATRLFELGESAKTVQSFLGHSDISV 361 Query: 319 A-ETYTKGADRIR 330 +TYT D ++ Sbjct: 362 TLDTYTHVLDSMK 374 >gi|167751365|ref|ZP_02423492.1| hypothetical protein EUBSIR_02351 [Eubacterium siraeum DSM 15702] gi|167655611|gb|EDR99740.1| hypothetical protein EUBSIR_02351 [Eubacterium siraeum DSM 15702] Length = 391 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 52/373 (13%), Positives = 98/373 (26%), Gaps = 43/373 (11%) Query: 1 MTPSLRLPPFVTKERTRHGKI--IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKR 58 M + ++R G+ Y T + L Sbjct: 1 MAKRRPSGDGMVRKRE-DGRWEGRIVVGHKKNGDPIHRYVLARTQKELIVK-LHDCIEMY 58 Query: 59 EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTK 117 + L + + ++ ++ S+++ QI GD +TT+ Sbjct: 59 RDADLTEDSNMMLGEWLDRWINEYMIFTIRESTLDSYKAMIKNQIKPYLGDRPLSALTTQ 118 Query: 118 HIRSGVESRKHTPS--------------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163 ++ + K + AVR + NP + Sbjct: 119 ELQKFYNTVKKKGRVKADKLHGTELADSMVRGIHMMLHEALDMAVRLRLIVKNPTVGTTI 178 Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223 PK + E +++F + + F L +GLR + C + Sbjct: 179 PKNNYPPKQILNDEQLERFMQRIRQDERWYDFFYTELTTGLRRGEICGLKWEDFDAENGK 238 Query: 224 IKTQKTGTIIT-----------------VELPDGFMKLLAMTPIG----KETFFINNDKQ 262 +K +++ + LP +LL I ++ Sbjct: 239 LKVRRSVAKRKGGGLNIGETKTETGTRTIVLPPSTAELLRKRKETAVSEWIFPNIYEPEK 298 Query: 263 KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAE 320 M+ K +A + H +R AT + G A L G + Sbjct: 299 PMHPDYAYHRLKTLLKQAELPLIRFHDLRHTFATHALAGGVDAKTLSGILGHTNASFTLD 358 Query: 321 TYTKG-ADRIRLG 332 TYT D R Sbjct: 359 TYTHVTTDMQRNA 371 >gi|325107529|ref|YP_004268597.1| integrase family protein [Planctomyces brasiliensis DSM 5305] gi|324967797|gb|ADY58575.1| integrase family protein [Planctomyces brasiliensis DSM 5305] Length = 310 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 50/300 (16%), Positives = 97/300 (32%), Gaps = 16/300 (5%) Query: 36 PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF 95 + + L E I ++ T LI + N++ ++ Sbjct: 5 RSENSAELRKIRSVILRSPESGDEVIGPVVQQADTDDQLIELWL-----HGRPKNTQTAY 59 Query: 96 ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYV 153 + + R + +++ + + SS + LT+++ LF + R Y+ Sbjct: 60 GREIVRFMDWV-KKPLRTVKLGDVQAFADELSDSLKESSLHRALTAVKSLFAFGFRLGYL 118 Query: 154 AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213 + + +++ P + E E + R L G R S+ C Sbjct: 119 SFDVGRAMKLPTFRDELADRILGETDVLRIISLEPQPRNRALLLTLYAGGFRVSELCSLK 178 Query: 214 VQHLQNNI---FSIKTQKTGTIITVELPDGFMKL---LAMTPIGKETFFINNDKQKMNAT 267 HLQ K G TV +P + L + + F + ++ + Sbjct: 179 WCHLQERDSAGQITVFGKGGKTRTVLMPQSVWEAVMKLRDSDSSEAPVFRSRKNGHLDES 238 Query: 268 QFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 K A +AG++K S H R A+ + D H + AT G ++ Y Sbjct: 239 AVWRIVKKAAERAGIDKNVSCHWFRHAHASHALDRNCPIHLVQATLGHASISTTGRYLHA 298 >gi|300869256|ref|ZP_07113849.1| Integrase family protein [Oscillatoria sp. PCC 6506] gi|300332747|emb|CBN59047.1| Integrase family protein [Oscillatoria sp. PCC 6506] Length = 281 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 44/262 (16%), Positives = 86/262 (32%), Gaps = 15/262 (5%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132 L+ + + N+ S+ + +++ + +T I++ + + + S Sbjct: 13 LLDLWL-----HGRSKNTAGSYRLHTSRLLSFVDNKPLSSVTLADIQAWELTLSNLSSGS 67 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 + +++ L + + + +N L V K E Q + Sbjct: 68 QRTAIFAIKSLLSFGHKLGVLPVNVGLLVRSRGVKDTLSERILSEAEVQAMIASETDPRN 127 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNI-------FSIKTQKTGTIITVELPDGFMKLL 245 R+ L GLR S+ C + L+ K KT ++ G + L Sbjct: 128 RVMLRLLYSGGLRVSELCGLKWKDLKERPGAGGQVTIFGKGNKTRVVLLPPGIWGGLIQL 187 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303 F ++ + KA A +AG+ S H +R A+ S D GA Sbjct: 188 GPGQPDDPVFHSYLGGGHLHRSHLWRIVKAAAIRAGISDKVSPHWLRHAHASHSLDRGAP 247 Query: 304 AHELMATYGWKTVDQAETYTKG 325 H + T G ++ Y Sbjct: 248 IHLVQQTLGHSSLATITRYLHA 269 >gi|167854818|ref|ZP_02477596.1| site-specific tyrosine recombinase XerC [Haemophilus parasuis 29755] gi|167854116|gb|EDS25352.1| site-specific tyrosine recombinase XerC [Haemophilus parasuis 29755] Length = 261 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 35/227 (15%), Positives = 72/227 (31%), Gaps = 13/227 (5%) Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170 T + I S + + S L ++R + V+Q + +NP L ++ PK Sbjct: 13 LDASTVRWILSQSHKQGLSAKSIGLRLVALRQFLAFLVKQGELKVNPTLGIKSPKANKHL 72 Query: 171 IRPWTKEDMQQFKS---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT- 226 + E + Q + + E + SGLR S+ + + ++ Sbjct: 73 PKNIDAEQIGQLLNIDSNEPLDLRDVAMMELMYSSGLRLSELQGLDLGDMDLPNREVRLL 132 Query: 227 QKTGTIITVELPDGFMKLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATK 279 K V + + + F+N +++ + K K Sbjct: 133 GKGNKERIVPIGSKALDAIEQWLAVRGQFHPKDNAVFLNQRGGRLSHRSIQLAMKKWGQK 192 Query: 280 AGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 ++ H +R AT +A + G ++ + YT Sbjct: 193 QALDTHLHPHKLRHSFATHMLEASQDLRAVQELLGHSSLSTTQIYTH 239 >gi|160915626|ref|ZP_02077834.1| hypothetical protein EUBDOL_01633 [Eubacterium dolichum DSM 3991] gi|158432102|gb|EDP10391.1| hypothetical protein EUBDOL_01633 [Eubacterium dolichum DSM 3991] Length = 403 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 48/389 (12%), Positives = 101/389 (25%), Gaps = 72/389 (18%) Query: 1 MTPSLR-LPPFVTKERTRHGKIIYYFRK--GHGRRIRLPYPHESTFIPAYMSALTGSTPK 57 M + +P + T TR G + Y R G+++ L A Sbjct: 1 MAKKKKNIPQYGT--VTRKGVLYYRTRILDADGKQVSLYGTTCEELYDKEQEARRQVAEI 58 Query: 58 REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITT 116 + P T+ ++ ++ + + S II+ GD ++T Sbjct: 59 IFHREHP-----TVAEYCEKWLL-MQSAKVSPATLKGYASNMKNYIIKPLGDMYMEEVTA 112 Query: 117 KHIRSGVESRKHTPSSAIQFLTS-MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 IR + + S + ++ +F A R + + NPC + K + Sbjct: 113 DDIRLALIPLSNKSESLHNTVNMLLKCIFYSAERSQLLEYNPCEGISAKGGKPTQKKDSL 172 Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 + + +G P L LY+GLR ++ + + + + Sbjct: 173 TDQQVEVLLETVKGLPPYLFTMIGLYAGLRREEALALQWDCVFLDAPTPYISVRRAWRSE 232 Query: 236 ELPDGFMKLLAMTPIGKETFFINN---------------------DKQKMNATQFSIWFK 274 L ++ + Q ++ +QF ++ Sbjct: 233 HNRPVISTTLKTKAARRDIPIPKCLVNCLREAKAASKSEYVIADSEGQPLSYSQFKRVWQ 292 Query: 275 AKATK-------------------------------------AGVNKSAHGVRKFSATIS 297 + + + H +R T Sbjct: 293 YIVVRSTKERTYYKYVNGQSIKYTVQPSLGGHQKNNPNIVYSLDFDVTPHLLRHTYITNL 352 Query: 298 ADAGATAHELMATYGWKTVDQAE-TYTKG 325 AG + G + Y + Sbjct: 353 LYAGVDPKTVQYLAGHENSKTTMDIYARV 381 >gi|83643202|ref|YP_431637.1| site-specific tyrosine recombinase XerC [Hahella chejuensis KCTC 2396] gi|83631245|gb|ABC27212.1| tyrosine recombinase XerC [Hahella chejuensis KCTC 2396] Length = 301 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 41/273 (15%), Positives = 86/273 (31%), Gaps = 23/273 (8%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESRKHT 129 Y S +V++ S+ ++ +G ++ + T +R + Sbjct: 8 EAFIAYLHSE--RRYSVHTVSSYNRDLRRVVAYCDANGVASWKDLHTPQLRQALSEFHRR 65 Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 S + L+++R +++ +R+ V NP V PK + +Q Sbjct: 66 GLGSRSLHRLLSTVRRFYEYLLRERLVYENPANGVRAPKMTKRLPATMDVDQAKQLLDSP 125 Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241 E + + E SG+R S+ + HL + + K G V + Sbjct: 126 VEEEELEIRDQAIAELFYTSGIRLSELAGLDLAHLDLSEGLARVLGKGGKERLVPVGGQA 185 Query: 242 MKLLAMTPIGK--------ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRK 291 K L + F++ +++ + A K G + H R Sbjct: 186 RKALRDWLQARASLAVAGEPAVFVSLRGGRLSRRSIQERLRQWAQKKGFSGRLYPHLFRH 245 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324 A+ ++ + G + + YT Sbjct: 246 SCASHLLESSGDLRAVQELLGHADISTTQIYTH 278 >gi|118616367|ref|YP_904699.1| prophage integrase [Mycobacterium ulcerans Agy99] gi|118568477|gb|ABL03228.1| prophage integrase [Mycobacterium ulcerans Agy99] Length = 389 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 45/347 (12%), Positives = 96/347 (27%), Gaps = 34/347 (9%) Query: 8 PPFVTKERTRHGKIIYYFRK-------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60 P + K G+ Y R G A+ S Sbjct: 6 PRGIRKRLNAAGEPRYQVRYLIRDPDAPSGWVETSATFPTLREAKAFKSERDNEAALGAR 65 Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHI 119 PR T L + +++ S ++ + + +++ +I + G +IT + Sbjct: 66 RFDPRLGRTPLSRIWTQFSDSKKPA-VSPKTWSGYNQHWELRIKPRFGHVPVDEITRADV 124 Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 R+ V+ P + + L +R + A + + NP L V + + Sbjct: 125 RAFVDGLTVGPWAKVSTLRLLRSILDVAHQDGRIHRNPALGVSAGRIPERERHRYLTAQE 184 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------------NNIFSIKTQ 227 + + L Y+GLR S+ V+ + + Sbjct: 185 VRMLATACGDQGD--VVTILAYTGLRWSEPVGLRVKDIDLTARRLYVRRAAPEVEGHIVI 242 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF---------SIWFKAKAT 278 +++ G+ T + + + Sbjct: 243 GPPKTRAGIRTVPLPQVVVDIFKGRITGQAPDQPAVTSTNGAMLRSNNWRRHTHWNKALK 302 Query: 279 KAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYT 323 + + H +R A+++ +GA + T G T Y+ Sbjct: 303 STDLAPLTIHDLRHTYASLARKSGADLRYVQKTMGHSTPTVTANIYS 349 >gi|237713434|ref|ZP_04543915.1| mobilizable transposon [Bacteroides sp. D1] gi|262407221|ref|ZP_06083769.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|229446416|gb|EEO52207.1| mobilizable transposon [Bacteroides sp. D1] gi|262354029|gb|EEZ03121.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] Length = 386 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 52/375 (13%), Positives = 110/375 (29%), Gaps = 45/375 (12%) Query: 1 MTPSL---RLPPFVTKERTRHGKIIYY---FRKGHGRRIRLPY-----PHESTFIPAYMS 49 MT + P + +++ +G + Y +R G ++ L + Sbjct: 1 MTKKTTIQKEPVKLREKKLANGNVSLYLDIYRNGKRQKEYLKLYLIDATTPLEREQNRQT 60 Query: 50 ALTGSTPKREYINSPRKKPTTLKW-------LISEYRKSAHWGSL---AVNSRISFESYF 99 T K + + + + + YRK + + ++ S Sbjct: 61 LATAQAIKSKRLIEMQNGEYSFTRQFKEDTPFLEYYRKMVEERHKNPESDGNWGNWRSCL 120 Query: 100 DQIIRKSGDFD-YRKITTKHIRSGVE---------SRKHTPS---------SAIQFLTS- 139 + + ++ IT + I + ++ P S ++ Sbjct: 121 RYLEIYCDEKTTFKDITPEFINGFKDFLNNVEKDTHKRTGPRRERDVFQGLSQNSKVSYF 180 Query: 140 --MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197 +R A + + +NP +E K T E+++Q + + AF Sbjct: 181 NKLRACINQAYDERIIPVNPLRGIEGFKAAEVKRDYLTLEEVKQLAATPCRYPILKRAFL 240 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI 257 F +GLR SD + +Q + + + Sbjct: 241 FSCLTGLRKSDIQKLTWSEVQKFGDYTRIVFKQKKTGGQEYLDISSQAEKYLGERGNPED 300 Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKT 315 S+ + + A +NK + H R A + D GA + + G K Sbjct: 301 PVFTGFTYGAWTSLELQRWSMAANINKNLTFHCGRHTFAVLMLDLGADIYTVSKLLGHKE 360 Query: 316 VDQAETYTKGADRIR 330 + + Y K D+ + Sbjct: 361 LATTQIYAKVLDKNK 375 >gi|322436114|ref|YP_004218326.1| integrase family protein [Acidobacterium sp. MP5ACTX9] gi|321163841|gb|ADW69546.1| integrase family protein [Acidobacterium sp. MP5ACTX9] Length = 381 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 42/327 (12%), Positives = 81/327 (24%), Gaps = 30/327 (9%) Query: 22 IYYFRKGHGRRIRLPYPHE-----STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76 YY G R R T A + T L Sbjct: 27 RYYEDAATGGRTRKALFVGTTDKYKTEAQARKAVEAILLKLNAEKPMHHLGTVTFGGLCD 86 Query: 77 EYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ 135 Y + +R S+ S + I + G++ + + + +P + Sbjct: 87 RYIAEELPERYS--TRKSYLSNINLHIKPRWGEYLIEAVRPMAVEGWFKEMDKSPKTKAH 144 Query: 136 FLTSMRVLF----KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 + M V+F +W + E + V+ ++ + T + + E + Sbjct: 145 IRSVMHVIFECAARWELFNERRNPIEMVRVKDSTKRRKRPMILTNDTFDAVLAGLPEPFR 204 Query: 192 PRLAFEFLLY------SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK-- 243 + L +GL+ D Q L + Sbjct: 205 TMVVVAQCLGLRVSEITGLQWGDLDTERRQLLVQRSIVNGRVDDVKTEYSHDHVPIHESL 264 Query: 244 ---LLAMTPIGKETFFINNDKQKMNATQFS--IWFKAKATKAGVNKS-----AHGVRKFS 293 LLA + ET +++ + K AG+ H R Sbjct: 265 LEVLLAWSEQCPETEEGWMFPNPLSSKPYYSTEIQKRYLKPAGIKLGLGPIGWHTFRHTY 324 Query: 294 ATISADAGATAHELMATYGWKTVDQAE 320 + + GA ++ Sbjct: 325 RSWLDETGAPMKVQQELMRHASIQTTM 351 >gi|308235890|ref|ZP_07666627.1| site-specific tyrosine recombinase XerC [Gardnerella vaginalis ATCC 14018] gi|311115014|ref|YP_003986235.1| tyrosine recombinase XerC [Gardnerella vaginalis ATCC 14019] gi|310946508|gb|ADP39212.1| tyrosine recombinase XerC [Gardnerella vaginalis ATCC 14019] Length = 357 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 42/323 (13%), Positives = 80/323 (24%), Gaps = 65/323 (20%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRK 127 L Y L + ++ Q + G D + T +R + Sbjct: 23 SDLSDRYIDYLRSNKGLGSRTLRAYRVDVLQCLEWCGVNDLSDLNSVSTSVLRQWMYWLN 82 Query: 128 --HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 H SS + + ++R F W ++ NP + PK E + ++ Sbjct: 83 KNHARSSLARKVVAVRGFFAWTTHVGLISANPAQILNTPKIVNELPTVLDEAQAEKLLDC 142 Query: 186 WSEGSQPRL---------------------------------------------AFEFLL 200 + S+ E L Sbjct: 143 AEDRSEDYAVDKSPATEHQENTPLKSQIKMRIKSKIKSQTKTKQEYVIALRNAAILELLY 202 Query: 201 YSGLRCSDSCRAG-VQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259 +G+R + N T K V K + Sbjct: 203 ATGMRVGELTGLNVQDMDFENHTVKVTGKGNKQRVVPFGVPAAKACKKWLDCGRSALQEK 262 Query: 260 ------------DKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHE 306 ++++ A A V + H +R +AT + GA E Sbjct: 263 SAASSQALFLGVRAKRIDQRIVRSIVHEAAAAANVPDVAPHALRHSAATHMLNGGADLRE 322 Query: 307 LMATYGWKTVDQAETYTKGADRI 329 + G +++ + YT + + Sbjct: 323 VQELLGHSSLNTTQRYTHVSIQA 345 >gi|163796175|ref|ZP_02190137.1| putative integrase/recombinase protein [alpha proteobacterium BAL199] gi|163797772|ref|ZP_02191719.1| putative integrase/recombinase protein [alpha proteobacterium BAL199] gi|159176992|gb|EDP61556.1| putative integrase/recombinase protein [alpha proteobacterium BAL199] gi|159178634|gb|EDP63174.1| putative integrase/recombinase protein [alpha proteobacterium BAL199] Length = 276 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 35/274 (12%), Positives = 89/274 (32%), Gaps = 18/274 (6%) Query: 79 RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQ 135 + +L+ ++ S+ + R G ++ + +R+ + S Q Sbjct: 2 IEDMTVRNLSPATQRSYLHAVAKFSRFFGRSP-DRLGLEDVRAFQVHLVSTGISWPSLNQ 60 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195 + ++R + + + + + + + +++ +F + R A Sbjct: 61 TVCALRFFYGVTLGHGEIP----ERIPYAREPRKLPVVLSADEVVRFLEAV-ASLKSRAA 115 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKE 253 +GLR S+ V + + I+ K G V L + +L Sbjct: 116 LTTAYAAGLRVSEVVALRVGDVDSGRMVIRVEHGKGGKDRYVMLSAQLLGILRTYWRLAR 175 Query: 254 TFFINNDKQ----KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHEL 307 + ++ ++ AG++K + H +R AT ++G + Sbjct: 176 PEHWLFPGREASKPIDVQVLHAACRSARAAAGLDKRVTVHTLRHSFATHLLESGTDIRII 235 Query: 308 MATYGWKTVDQAETYTKGADRI-RLGIKNSRRIS 340 G + YT+ ++ + R R++ Sbjct: 236 QVLLGHANLSTTARYTQVSNGLIRRTESPLDRLA 269 >gi|255103342|ref|ZP_05332319.1| integrase [Clostridium difficile QCD-63q42] gi|255652432|ref|ZP_05399334.1| integrase [Clostridium difficile QCD-37x79] Length = 370 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 47/365 (12%), Positives = 109/365 (29%), Gaps = 38/365 (10%) Query: 13 KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 ++R ++ + FR + + L + TL Sbjct: 6 RKRNKNYVVYLEFRDDESGKRKQKNMGAFDKKRDANKRLAEVKDSIYKDSFLVPNEITLA 65 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT-- 129 + ++ + +++ ++ S+ + I G + +++ HI++ ++ Sbjct: 66 GFLLDFLEKYK-DNISASTYKSYIAICKNHINPSIGKYRLQELRNIHIQNYIDDLAGNLN 124 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 P + + +R+ K A R + + N +E P+ K + KE M + +G Sbjct: 125 PQTIKVHINVLRLAIKRAYRIKLIKENIIDGIESPRIKKFKNEIYDKEQMLKLLEVA-KG 183 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------------I 233 + L + GLR S+ ++ + +I K + Sbjct: 184 TNLELPISLAIGLGLRLSEVLGLTWDNIDFDENTITVNKITSRLDGSVILKEPKTESSVR 243 Query: 234 TVELPDGFMKLLAMTP-------------IGKETFFINNDKQKMNATQFSIWFKAKATKA 280 + P M LL F + + S F+ Sbjct: 244 KIFAPIELMNLLKNYRLEQNKKLLRSIVRNEYNLLFFDRKGNPIAEDVMSKKFRKFLENN 303 Query: 281 GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRR 338 + H +R T+ ++ + G ++ Y+ + + S R Sbjct: 304 DLPHIRFHDLRHSHVTLLINSKVPIKVISERVGHSNINTTLNVYSHVL--KEMDKEASDR 361 Query: 339 ISSVV 343 IS + Sbjct: 362 ISENL 366 >gi|239621773|ref|ZP_04664804.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239514964|gb|EEQ54831.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 396 Score = 110 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 43/357 (12%), Positives = 95/357 (26%), Gaps = 50/357 (14%) Query: 10 FVTKERTRHGKIIYY--FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67 VT+ +T G+ Y +RK G + + + P+ Sbjct: 3 NVTRYKTSKGETRYRVRYRKPDGTQTDKRGFKRKVDAENWAAKRVTVAKAEGTYIDPQAG 62 Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR 126 T+ L + + + + E + + + G+ +T + + V Sbjct: 63 KATVGELAPAWLAKKKLST-KPSHYRTLEGAWEKWVKPEWGNTPVSAVTRETTQQWVTGI 121 Query: 127 KH---------------TPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKRKT 168 P SA L + + + A + + NP +E P+++ Sbjct: 122 SQGKTVKDERGNEIVLAKPRSASVVLRAHGVLAGILDDAKKDRRIPDNPARGIELPRKRR 181 Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI---- 224 + T E + + + + + G+R + V + I Sbjct: 182 KKHVYLTAEQLDRLAGSVTPWRRDLVLVLG--LCGMRWGELIPLRVMDVDLEKHRIYIGV 239 Query: 225 -------KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK- 276 T + +L D + + + Sbjct: 240 SAPMVGGVIIPDDTKTYKARAIMYPVVLDPIMRRLCADRKPGDLLFEQPGREGMMIREWG 299 Query: 277 ------------ATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 +AG+ + H +R +A++ AGA + G K+ Sbjct: 300 NASRDDGWLSVGLRRAGIPGHLTIHDLRHTAASLMVRAGANVKAVQRQLGHKSAAMT 356 >gi|222032710|emb|CAP75449.1| integrase [Escherichia coli LF82] gi|312945501|gb|ADR26328.1| putative integrase [Escherichia coli O83:H1 str. NRG 857C] Length = 357 Score = 110 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 62/345 (17%), Positives = 111/345 (32%), Gaps = 23/345 (6%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63 LPP + R+ Y G+ L A + + + R Sbjct: 9 RRDLPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAVSEAIQANIELLSENRRESLI 65 Query: 64 PR---KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 R TL + Y + + + + S I RK D I+TK + Sbjct: 66 DRIKGADAITLHAWLDRYETILSERGIRPKTLLDYASKIRVIRRKLPDKPLTDISTKEVA 125 Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + + + +SA +++ +F+ A+ + +V NP + K + R E Sbjct: 126 AMLNTYVAEGKAASAKLIRSTLVDVFREAIAEGHVETNPVTATRTAKSEVRRSRLTANEY 185 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 + + + RLA + + +G R D CR + +N I+ KTGT + + L Sbjct: 186 VAIYHAAEPLPIWLRLAMDLAVVTGQRVGDLCRMKWSDINDNHLHIEQGKTGTKLAIPLM 245 Query: 239 DGFMKL---------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NK 284 L G ET + + ++ S +F +G+ Sbjct: 246 LTIDALNISLADTLQKCREASGSETIIASTHHEPLSPKTVSKYFTKARNVSGLSFDGDPP 305 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + H +R SA G K+ A Y R Sbjct: 306 TFHELRSLSA-RLYRNQIGDKFAQRLLGHKSDSMAARYRDSRGRE 349 >gi|328466756|gb|EGF37877.1| integrase/recombinase XerC [Listeria monocytogenes 1816] Length = 357 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 45/354 (12%), Positives = 105/354 (29%), Gaps = 41/354 (11%) Query: 15 RTRHGKIIYYFRK----GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 + ++G FR G ++ + ++ T Sbjct: 5 KDKNGTWFTSFRYINWQGEKKQKVKRGFSTRKEALEW--------ERQFLQQKTADLTMT 56 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESR--- 126 Y+K + ++ + S ++ I+ + +I K I Sbjct: 57 FLSFWEIYKKDMKNR-IRESTWETKISIVERKILPYFKNRKMSEIAPKDIIQWQNEMISY 115 Query: 127 ------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDM 179 ++P + +F AVR + NP ++ + WTKE+ Sbjct: 116 RDKNGKAYSPVYLKTLHNQLSAMFNHAVRFYELKSNPARKAGNMGKEKSVEMLFWTKEEY 175 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------- 232 Q+F + + AFE L + G+R + N ++ K+ Sbjct: 176 QKFSDSMMDKAISFYAFEILYWCGIRLGELLALTASDFDFNKGTLSISKSCQRLKGMDVI 235 Query: 233 ---------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 +++P+ + + + + + + A + + Sbjct: 236 TEPKTPKSNRIIQMPEFLGEEIQEYIQSIYKWEPDERLFPITKSYLHSEMTRGAKEQKIK 295 Query: 284 K-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 + H +R ++ D+G +A + G +++D Y ++ I N Sbjct: 296 RIRIHDLRHSHVSLLIDSGFSAVAIADRLGHESIDVTYRYAHLFPTKQMEIANM 349 >gi|237713490|ref|ZP_04543971.1| tyrosine type site-specific recombinase [Bacteroides sp. D1] gi|262407276|ref|ZP_06083824.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|229446472|gb|EEO52263.1| tyrosine type site-specific recombinase [Bacteroides sp. D1] gi|262354084|gb|EEZ03176.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] Length = 419 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 36/279 (12%), Positives = 77/279 (27%), Gaps = 19/279 (6%) Query: 78 YRKSA---HWGSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHTP-- 130 Y KS + + + +++ + ++ + + + I TK + P Sbjct: 134 YFKSIIDIRHRNSSDSIIVNWNRVYALMLIFTDNQPMIFANIDTKLVEDFRLFLLDAPQG 193 Query: 131 ---------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 ++A + + K A Y + ++ K K T E++ + Sbjct: 194 GNKKGTISQNTASTYFAIFKAGLKQAFVDGYFVSDIAAKIKGIKEKEARREHLTLEELNR 253 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 + + + A F +GLR D + + L + Sbjct: 254 LVCTPCDNATIKRAALFSALTGLRHCDIMKMTWKELTKEGTHYRINFDQKKTKGVEYMPI 313 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 + + + S +G+ K + H R AT+ Sbjct: 314 SEQAYDLCGEPGHPDQLVFEGLPAPSWISKPLARWIEASGITKHITFHCFRHTYATLQLS 373 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL-GIKNSR 337 G + G V + YTK D + + Sbjct: 374 NGTDLFTVSKMLGHTNVRTTQRYTKVVDEKKENAADAIK 412 >gi|317487260|ref|ZP_07946055.1| phage integrase [Bilophila wadsworthia 3_1_6] gi|316921450|gb|EFV42741.1| phage integrase [Bilophila wadsworthia 3_1_6] Length = 347 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 50/304 (16%), Positives = 93/304 (30%), Gaps = 11/304 (3%) Query: 29 HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA 88 +G+R I L P + TLK KS +W A Sbjct: 32 NGKRKTKTVDTLEEAIIERQKMLNNDVPTSFTKDPDDTSGWTLKQAYDR-TKSLYWEDSA 90 Query: 89 VNSRISFESYFDQIIRKSGD-FDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLF 144 + +++ S F I G+ KIT I V + ++ + + L + +F Sbjct: 91 WSYKVA--SNFKSISTYFGETMPIGKITLDDIDDYVNTLLTKGNSNGTINRKLAILSRIF 148 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204 + AV + + + P + + + +E+ + + F LLY+G Sbjct: 149 RTAVERGKLEVVPKIPLRKEAHHRVRFLTQEEENAFVKAFIQNGYNTHAEVFLILLYTGF 208 Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264 R + R + + + +I KT +P + E Sbjct: 209 RLGECWRIECRDINLELGTITAWKTKNGHPRTIPIVDKIRPILERKIFEAGENGKLFPTA 268 Query: 265 NATQFSIWFKAKATKAGVNKS----AHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320 + F + G+ K H +R A+ A G + + G + Sbjct: 269 DNRWFESAWNRIKRLLGLEKDVQLVPHALRHTCASRLAQRGVSMMVIKEWMGHSNIKTTM 328 Query: 321 TYTK 324 YT Sbjct: 329 RYTH 332 >gi|312136250|ref|YP_004003587.1| integrase family protein [Methanothermus fervidus DSM 2088] gi|311223969|gb|ADP76825.1| integrase family protein [Methanothermus fervidus DSM 2088] Length = 271 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 36/262 (13%), Positives = 80/262 (30%), Gaps = 9/262 (3%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 ++ I + + + + ++ + +R D + K I+ Sbjct: 5 IREAIDDLILDMEIRNYSDGTIRTYSYILNSFLRFIEDKEINK-KRDLIKQMKRYLVLLK 63 Query: 131 SSAI--QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 ++ + V+F+ ++ + N + + PK + I E + +E Sbjct: 64 RKNRSERYRHLVAVVFRNLLKTLNMDPNNLKTPKVPKSIPKSI----SEKEVKRLFKAAE 119 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLAM 247 + ++ L +GLR S+ ++ + K V + LL Sbjct: 120 KLRDKVILMLLYKTGLRVSELVNLKLKDIDFTDRSIKVRGKGNKERVVFFDEECKTLLEK 179 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307 D + + AK K + H +R AT + G + Sbjct: 180 YIKNNSVNEKLIDISVRQIQRI-VKKTAKKAKIKKRVTPHVLRHSYATHLLEKGLNIRYI 238 Query: 308 MATYGWKTVDQAETYTKGADRI 329 G ++ E YTK ++ Sbjct: 239 QKLLGHSSLSTTEIYTKVTNKK 260 >gi|200388050|ref|ZP_03214662.1| phage integrase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199605148|gb|EDZ03693.1| phage integrase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 337 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 41/334 (12%), Positives = 88/334 (26%), Gaps = 38/334 (11%) Query: 14 ERTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 +T G+ + R G+RIR AY +T ++ ++ + L Sbjct: 4 RKTGSGEWLCDLRPTGVKGKRIR-RKFATKGEALAYEKYITSEMEEKPWLGEKQDNRR-L 61 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESY---FDQIIRKSGDFDYRKITTKHIRSGVES--- 125 LI + L + + I G+ +IT E Sbjct: 62 SELIELW------HDLYGRTLADSDRMMSKLKGICAGMGNPIAAQITAADFSKYREGRLK 115 Query: 126 ----------RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 P + ++ +F + + ++ LS + E + + Sbjct: 116 GEIPDVNGRCMPIQPQTVNHEQRNLSAVFGTLKKLGHWSLPNPLSGIPTFKVDEKMVSFL 175 Query: 176 KEDMQQFKSFWSEGSQ---PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 + + + S + + L +G R S++ + + K K+ + Sbjct: 176 YPEEIKTLLQYLSESNSPSVLIIAKICLATGARWSEAENLEGSQVTPYRITYKNTKSRKV 235 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKF 292 ++ + + T F + + H +R Sbjct: 236 RSIPISKELYNEIPKKRGQLFTPC---------RKTFERTVAKAGIELPEGQCTHVLRHT 286 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA 326 A+ G L G + Y A Sbjct: 287 FASHFMMNGGNILVLKEILGHSDIKMTMIYAHFA 320 >gi|16124599|ref|NP_419163.1| site-specific tyrosine recombinase XerC [Caulobacter crescentus CB15] gi|221233288|ref|YP_002515724.1| site-specific tyrosine recombinase XerC [Caulobacter crescentus NA1000] gi|13421495|gb|AAK22331.1| integrase/recombinase XerC, putative [Caulobacter crescentus CB15] gi|220962460|gb|ACL93816.1| integrase/recombinase, XerC-CodV family [Caulobacter crescentus NA1000] Length = 304 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 41/283 (14%), Positives = 86/283 (30%), Gaps = 31/283 (10%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISF----ESYFDQIIRKSGDF----DYRKITTKHIRSG 122 + + + + + ++ +Y + + G+ +I+ +R Sbjct: 4 RQAYAAWLDHLTLERRASPRTVRAYGDNVLAYLNFLEAHRGEALSLSALAEISAADLRGY 63 Query: 123 VESRKHT-----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 + R+ P S Q L+S+R ++ ++ VA V P+ K RP +++ Sbjct: 64 LAWRRQGEHALAPRSLSQALSSIRAFHRYLDQRHGVANAAVDLVRGPRLKIGLPRPVSED 123 Query: 178 DMQQ--------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229 + + E ++ L GLR S++ + T K Sbjct: 124 QARDLITQAAEDTERDPWETARDEAVLTLLWGCGLRISEALSLRMSDAPLAATLRITGKG 183 Query: 230 GTIITVELPDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKAGV 282 G V + D + F ++ + + G+ Sbjct: 184 GKTRIVPVLDAVRDAIEAYLDELPFNLAPDEALFRAKRGGPLSPRHVQGLVQTLRGRLGL 243 Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + H R AT AGA + G ++ + YT Sbjct: 244 SDRVTPHAFRHAFATHLLGAGADLRAIQDLLGHASLSTTQRYT 286 >gi|281426208|ref|ZP_06257121.1| mobilizable transposon, int protein [Prevotella oris F0302] gi|281399784|gb|EFB30615.1| mobilizable transposon, int protein [Prevotella oris F0302] Length = 418 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 42/308 (13%), Positives = 88/308 (28%), Gaps = 16/308 (5%) Query: 45 PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR 104 Y +A S + E + + + +V+ + ++E + Sbjct: 104 REYDNASLYSDTETEQAEQKERLQQNFIKYFDK-VADKRHRNSSVSIQTNWERVHVLLKM 162 Query: 105 KSGDFDY-RKITTKHIRSGVESRKHTP-----------SSAIQFLTSMRVLFKWAVRQEY 152 +GD +I + P ++A + + + K A Y Sbjct: 163 FAGDTLLFSQIDNRLAEDFKYFLLSAPCGGSKKGTISRNTASTYFSIFKAALKQAFIDGY 222 Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212 + I+ ++ + + T +++ + + E + A F +GLR D + Sbjct: 223 LTIDLSAKIKGIQEQESRREYLTLDELNKLANTPCERDVLKRAALFSALTGLRHCDIQKL 282 Query: 213 GVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272 + K T + + N + S Sbjct: 283 KWNEIAIEGNQAKLLFTQKKTKGVEYMPISEQAFKLCGEPRQPEQLVFEGLPNPSWISRP 342 Query: 273 FKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 +A KAG+ + S H R AT+ G + + G V + Y K D + Sbjct: 343 LRAWIEKAGIQKHLSFHCFRHTFATLQLANGTDIYTVSKMLGHTNVKTTQVYAKVVDEKK 402 Query: 331 -LGIKNSR 337 + Sbjct: 403 NKAANAIQ 410 >gi|228956231|ref|ZP_04118107.1| YdcL (Lambda integrase-like, N-terminal,DNA breaking-rejoining enzyme, catalytic core) [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228803440|gb|EEM50183.1| YdcL (Lambda integrase-like, N-terminal,DNA breaking-rejoining enzyme, catalytic core) [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|324328863|gb|ADY24123.1| YdcL [Bacillus thuringiensis serovar finitimus YBT-020] Length = 353 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 38/344 (11%), Positives = 102/344 (29%), Gaps = 41/344 (11%) Query: 11 VTKERTRHGKIIYYFR----KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 + K+ + G + R G ++++ + + + Sbjct: 3 IYKD-DKRGTYFFVVRVRQFDGTTKQVKRRGFKTKKEAREAEAKM--------LVEKESN 53 Query: 67 KPTTLKWLISEYRK--SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 T + + Y + ++N+ + + ++ ++++ G IT +H+ Sbjct: 54 SNLTFEHVADSYFNWYTQRRKQSSINTIKN--AIYNHLMKEFGKMKIDCITPRHVMDYQN 111 Query: 125 SR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 +++ +F T++ +F + ++ + NP +++++ + + + + Sbjct: 112 KMINEYSAEYLKKFHTTLSAIFNFGIKFHGLTTNPARIAGNFQKESKKRINFWEFEEFKQ 171 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDG 240 + + F L YSG R + + + +I K +T Sbjct: 172 FISVVDEPMYKAFFSTLYYSGARKGELLALTWEDINFEEKTINIHKTKYNRQVTEPKTKA 231 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNA------------------TQFSIWFKAKATKAGV 282 +++ + + A T F A V Sbjct: 232 SNRIIMLPNFVMNLLKSIKKDAALTAPVKNDYVVFGEFYDSLATTSLHKKFNNYLKIAMV 291 Query: 283 N-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 H R A+ + G + + G V TY+ Sbjct: 292 KEIVMHEFRHSHASYLINKGVSPLVVAQRLGHSDVATTLNTYSH 335 >gi|325662711|ref|ZP_08151308.1| hypothetical protein HMPREF0490_02048 [Lachnospiraceae bacterium 4_1_37FAA] gi|325471050|gb|EGC74277.1| hypothetical protein HMPREF0490_02048 [Lachnospiraceae bacterium 4_1_37FAA] Length = 351 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 50/356 (14%), Positives = 107/356 (30%), Gaps = 45/356 (12%) Query: 16 TRHGKII----YYFRKGHGRRIR-LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 TR GK+ YY RR + + + + + Sbjct: 4 TRDGKLWRSQFYYKDWQGIRRKKNKRGFKTKGEADEW--------ERNFLQQQQKNLDIS 55 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT 129 + + Y L ++ I+ FD ++ +I T IR+ Sbjct: 56 FENFVEIYFADMENR-LRESTIINKRYVFDLKVTPYFKHKKMCEIQTSDIRAWQNELIKK 114 Query: 130 PS------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDMQQF 182 S L ++ F +AVR + NPC + + + WTK++ ++F Sbjct: 115 GYAPTYLKSINNQLAAL---FNYAVRYYDLRDNPCRKAGSIGKSKADEMDFWTKQEFKEF 171 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------- 232 + R+AF L ++G+R + + + I K+ Sbjct: 172 LPSMDSKPEARMAFLLLYWTGMRIGELLALTYEDIDLEKRCITINKSYQRLNGKDMITPP 231 Query: 233 ------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-S 285 + +P ++ L N + + + GV + Sbjct: 232 KTPKSNRKISIPPFLVEELKEYCSMLYGITENERMFRFTKSFMEHEMVRGIKETGVRRIR 291 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRIS 340 H +R A++ + G + G + ++ TY+ + + + ++ Sbjct: 292 LHDLRHSHASLLVEMGFQPLAIAERLGHEKIETTLNTYSHLYPNKQ--AELAEKLE 345 >gi|301308338|ref|ZP_07214292.1| site-specific recombinase, phage integrase family [Bacteroides sp. 20_3] gi|300833808|gb|EFK64424.1| site-specific recombinase, phage integrase family [Bacteroides sp. 20_3] Length = 380 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 54/312 (17%), Positives = 100/312 (32%), Gaps = 19/312 (6%) Query: 36 PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF 95 A K E + L ++ RK+ Sbjct: 60 ARTLRKAEDIRRERAEALLNAKVEAVPESTSSDMLLSDWMAIVRKNHEHRG--ARDLNGI 117 Query: 96 ESYFDQIIRKSGDFDYRKITTKHIRSGVESRK----------HTPSSAIQFLTSMRVLFK 145 ++ +++ D + + ++ + +P +A + T++R Sbjct: 118 DNARKNLLKFRVDVRLCDVDKQFYLDYIDWLRSSCKTAWGKPVSPKTAHSYYTTLRTALN 177 Query: 146 WAVRQEYVAINPCLSVER---PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202 AVR+ +A NP +E K T E++++ + Q R A+ F + Sbjct: 178 EAVRENLIASNPWYRLEMTEKIKVPESKRDFLTIEEIKRMMATPFFNEQVRQAYLFSCFC 237 Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--ITVELPDGFMKLLAMTPIGKETFFINND 260 GLR SD + + L + + T V +P + + G T Sbjct: 238 GLRISDIRKLRWRDLSMSGGQWRASVVMTKTIHPVYIPLSSQAVKWLPERGDCTPDGLVF 297 Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 N + K A KAGV K + H R A + GA + + G ++V Sbjct: 298 GGLPNEGNLCVNLKNWAEKAGVKKNVTFHTARHSCAVLLLTLGADIYTVSKILGHRSVRS 357 Query: 319 AETYTKGADRIR 330 + Y K D+ + Sbjct: 358 TQVYAKIVDKKK 369 >gi|307701389|ref|ZP_07638409.1| site-specific recombinase, phage integrase family [Mobiluncus mulieris FB024-16] gi|307613404|gb|EFN92653.1| site-specific recombinase, phage integrase family [Mobiluncus mulieris FB024-16] Length = 368 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 46/367 (12%), Positives = 94/367 (25%), Gaps = 46/367 (12%) Query: 10 FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSAL------TGSTPKREYINS 63 +T+ R + G+++Y R G+ + + N Sbjct: 3 GITEIRHKDGRVVYRVRFRDGKTNASETFRNIETATYFRDLVKQFGGTAARNILDSRENP 62 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSG-DFDYRKITTKHIRS 121 TL + Y + A + + + + I K R +T + I + Sbjct: 63 DDTDTLTLGGIHQSYLEHAASYA-TPGTIARYRNMAASYIFPKIPPQTPIRALTRESIEN 121 Query: 122 GVESRKHTP---------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR-KTEGI 171 V + P + + + + LF + + + NP + P Sbjct: 122 YVTWLRAKPSRYGTSLKPRTIKRIVAFLSTLFNYQIEIGNLESNPARGIRIPNDAIPTQP 181 Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 T + +++ + FL +GLR ++ + +I K Sbjct: 182 VFLTPQQVEKIADNC---GYYGVLVRFLYATGLRFGEATALTPADVNVKTRTITVSKAWK 238 Query: 232 I------------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA---TQFS 270 TV + + LL + F + + F Sbjct: 239 QGEKSSDFYLGSPKTDTSTRTVLVSKSVIALLKPLLVEDAPFLFHPKTRPDRPLRNKTFR 298 Query: 271 -IWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADR 328 +K H +R + AG + G K + Y + Sbjct: 299 NCAWKQAVENMDPRPRIHDLRHSHVSRLIQAGIPLPVIQKRVGHKDIQTTINIYGHITPK 358 Query: 329 -IRLGIK 334 R Sbjct: 359 DARAAAD 365 >gi|256825348|ref|YP_003149308.1| site-specific tyrosine recombinase XerD [Kytococcus sedentarius DSM 20547] gi|256688741|gb|ACV06543.1| tyrosine recombinase XerD subunit [Kytococcus sedentarius DSM 20547] Length = 316 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 37/285 (12%), Positives = 86/285 (30%), Gaps = 33/285 (11%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHT 129 + E+ L+ N+ ++ + G + + +R + + Sbjct: 8 AVEEWLAHLGVERGLSANTTSAYRRDLVAWVAHLDAAGRTSWPSVQAADVRQHLADLTAS 67 Query: 130 PS---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + + + ++R +A+ + +V ++ V P + + +++ + Sbjct: 68 GRARSTVTRMVVAVRRFHAFALAEGWVEVDVAADVAPPAAVQPLPKALSLDEVARLIEST 127 Query: 187 SE------------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTII 233 + R E L +G R S+ V + + ++ K Sbjct: 128 GPVEGGADAVELAVARRDRAVLELLYGTGARVSEVTSLDVDDVDLDGLVVRLVGKGSKER 187 Query: 234 TVE-----------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 V +LA G +N +++ A +AG+ Sbjct: 188 HVPLGGAAAAAVGDWLATGRPVLAARGSGGAALLLNQRGRRLGRQSAWALVTAAGRRAGL 247 Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 + S H +R AT GA + G +V + YT+ Sbjct: 248 GEHLSPHTLRHSYATHLMAGGADVRVVQELLGHASVTTTQIYTRV 292 >gi|255326180|ref|ZP_05367266.1| tyrosine recombinase XerD [Rothia mucilaginosa ATCC 25296] gi|255296634|gb|EET75965.1| tyrosine recombinase XerD [Rothia mucilaginosa ATCC 25296] Length = 438 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 40/231 (17%), Positives = 73/231 (31%), Gaps = 31/231 (13%) Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 P+S + + ++R + V V +P V PK + + ED+Q+ + Sbjct: 188 LPLGPNSIARTMAAVRGAHAFWVSALIVPTDPAAPVTPPKNVKRLPKAVSVEDIQRLLAV 247 Query: 186 WSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--------------NIFSIKTQ 227 G + R EFL +G R S+ A + + + Sbjct: 248 PDRETATGLRNRAILEFLYATGARVSEMLNADIDDVHFEGTLTDEDGNQITLPGYVRLFG 307 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINN-----------DKQKMNATQFSIWFKAK 276 K V + K + + F+ + ++ + K Sbjct: 308 KGNKERLVPIGSYAQKAIQDYLVRARPSFVAHGKGTSALFVNGRGGRLGRQGAWLILKEA 367 Query: 277 ATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 A AG+ + S H +R AT GA + G ++ + YTK Sbjct: 368 AEAAGLSSDFSPHSMRHSFATHLLQGGADIRVVQELLGHASIATTQVYTKV 418 Score = 45.1 bits (105), Expect = 0.016, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 4/61 (6%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGVESR 126 L+ I +Y + ++ S+ + G D +ITT +RS + Sbjct: 49 LQKAIDQYLIHLRVERGSSEHTIASYARDLRRYSAYMATLGVIDPERITTAQVRSFMREL 108 Query: 127 K 127 Sbjct: 109 A 109 >gi|313887245|ref|ZP_07820939.1| putative ribosomal subunit interface protein [Porphyromonas asaccharolytica PR426713P-I] gi|312923298|gb|EFR34113.1| putative ribosomal subunit interface protein [Porphyromonas asaccharolytica PR426713P-I] Length = 413 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 45/304 (14%), Positives = 99/304 (32%), Gaps = 30/304 (9%) Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFE--------SYFDQIIRKSGDFDYR-KITTKH 118 TL+ I Y + + + + ++ + + D + Sbjct: 17 EQTLEAFIE-YLRLE--RNASPLTLTTYRPAITSYMECALELASDEWQPSDADRDLVRNW 73 Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 I ++ + T ++ + L++++ +K+ + V NP + PKR+ T+ Sbjct: 74 IMQQMDD-ELTSTTVNKNLSAVKSFYKYLQLRGVVDNNPTRYLRGPKREHTLPSFLTQAQ 132 Query: 179 MQQFKSFWSEGS------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT- 231 +++ + RL E + +GLR ++ Q + S++ G Sbjct: 133 IEEALETIPTDPEDFLAVRNRLIIETIYQTGLRRAEVASLETQQVDLASMSLRVVGKGRK 192 Query: 232 -------IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA-GVN 283 E ++ L FF+ + ++ G+ Sbjct: 193 ERIVPFGEALKEQMKAYLTLKERKVGQSRYFFVTLKCRPLSGADVYQVVHKALDVVPGLP 252 Query: 284 KS-AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISS 341 + AH +R AT +AGA + G ++ YT ++++ R S Sbjct: 253 RRGAHTLRHSFATEMLNAGAPITSIKELLGHSNLETTTRYTHTSFEQLKQLYHAHPRAQS 312 Query: 342 VVDS 345 V S Sbjct: 313 QVPS 316 >gi|238923573|ref|YP_002937089.1| putative phage integrase/recombinase [Eubacterium rectale ATCC 33656] gi|238925721|ref|YP_002939238.1| putative phage integrase/recombinase [Eubacterium rectale ATCC 33656] gi|238875248|gb|ACR74955.1| putative phage integrase/recombinase [Eubacterium rectale ATCC 33656] gi|238877397|gb|ACR77104.1| putative phage integrase/recombinase [Eubacterium rectale ATCC 33656] gi|291524021|emb|CBK89608.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629] Length = 282 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 38/274 (13%), Positives = 88/274 (32%), Gaps = 18/274 (6%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---H 128 K + R A +L + + S +R G + +T + S + +++ Sbjct: 3 KDIFESIRNEAEKRNLRERTIQLYCSDVSYFLRWIG-KNVSDLTLEDAESFLTAKRLEGR 61 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +P + + ++++ L+K ++ + +++++ Sbjct: 62 SPETHNHYRSAIKFLYKKVLKTVWDDDTVPAMKRE----RNLPAVLSRDEINAIIDAT-P 116 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLA 246 + + + SGLR S+ + N ++ K L + LL Sbjct: 117 NLKHKAIIATMYSSGLRVSEVVHLHYDDISRTNMTIHVRETKGRIDRYTILSQKNLDLLT 176 Query: 247 MTPIGKETFFINNDKQKMNA-----TQFSIWFKAKATKAGV--NKSAHGVRKFSATISAD 299 T + +FK A AG+ + S+H R A+ + Sbjct: 177 EYWYKCGRPKDILFPSSWTGGYLDITGVNQFFKKSAKLAGITRHVSSHACRHSFASHLFE 236 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 +G + + G + Y +++ LGI Sbjct: 237 SGTDIKYIQSLLGHVDPRSTDVYLHVSNKTLLGI 270 >gi|307720464|ref|YP_003891604.1| integrase family protein [Sulfurimonas autotrophica DSM 16294] gi|306978557|gb|ADN08592.1| integrase family protein [Sulfurimonas autotrophica DSM 16294] Length = 278 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 28/258 (10%), Positives = 75/258 (29%), Gaps = 13/258 (5%) Query: 75 ISEYRKS-----AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KH 128 I++Y+K + + + ++ + + T ++ Sbjct: 5 INKYKKEFLVSLEEYRGYSELTVKTYADVLGEAFQYIEIVQEDGHTVFNLMPYRIYIAGL 64 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + + L+++R ++ Q + + ++ Sbjct: 65 NAKTISKKLSAIRSFVEFLNEQGLHVALQADESIKVAKTLPKPVS----HAHILEALSQS 120 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248 Q +L L GLR S+ + ++ N K + L L+ Sbjct: 121 DLQEKLLAVMLYTLGLRISELASLELHNITNEWIR-VIGKGNKQRDIPLLGTTRALIDEY 179 Query: 249 --PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHE 306 + F + ++++ + + + H +R A+ + GA + Sbjct: 180 LSTFVVKKFLFEKNGERLSENSLRYMITKIFKRVALKVTPHQLRHSYASSLLNGGAPIVD 239 Query: 307 LMATYGWKTVDQAETYTK 324 + G ++ + YTK Sbjct: 240 VSELLGHSSMATTQIYTK 257 >gi|325679180|ref|ZP_08158771.1| site-specific recombinase, phage integrase family [Ruminococcus albus 8] gi|324109109|gb|EGC03334.1| site-specific recombinase, phage integrase family [Ruminococcus albus 8] Length = 361 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 53/351 (15%), Positives = 114/351 (32%), Gaps = 39/351 (11%) Query: 14 ERTRHGKIIYYFRKG---HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 + + G+ G ++ R + T A + + E + T Sbjct: 7 YKRKDGRWECRISLGSESGHKKYR--SFYGKTKEEAELKMVMACQ--SEEHCNEEITEMT 62 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129 +K L E+ S + ++ ++ II G + I K + +E + H Sbjct: 63 VKELALEWF-SVSKNRIKESTAANYRMKIEKHIIPPFGGMNAALIKAKAVYEFMEKKLHD 121 Query: 130 PSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 SA + ++ +F++A R+ + N + PK+ I +K++ ++ ++ Sbjct: 122 GLSARYISDIMVVLKSIFRYAAREYRIN-NVIDGIIMPKKAKPEITIMSKDEQKRLVTYI 180 Query: 187 SEG-SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 ++ S L LY+G+R + C +++ + + T I D K++ Sbjct: 181 NDNRSTSTLGVALSLYTGMRIGEVCALRWENIDTEKRVLTVRHTIQRIQCFEGDNKTKVI 240 Query: 246 AMTPIGKETFFINNDKQ-----------------------KMNATQFSIWFKAKATKAGV 282 P + + + FK AGV Sbjct: 241 IAEPKSQSSRREIPIPDCLIPMLKELKGKNSAFILTGTEKPIEPRTMQYRFKRILENAGV 300 Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRL 331 + H +R A+ + + G L G +V + Y + + Sbjct: 301 REYNYHVLRHCFASGAIELGFDVKTLSEILGHSSVQITLDRYIHTSMEHKR 351 >gi|27375981|ref|NP_767510.1| site-specific integrase/recombinase [Bradyrhizobium japonicum USDA 110] gi|27349120|dbj|BAC46135.1| bll0870 [Bradyrhizobium japonicum USDA 110] Length = 329 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 51/333 (15%), Positives = 103/333 (30%), Gaps = 17/333 (5%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK-PTTLKW 73 R G+ R+ R T + L + ++ R TTL Sbjct: 5 RKLRGRWQAQVRRRGVP-PRAKSFDTKTAAERWARDLEAEADRSGWVADTRAAEKTTLGE 63 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PS 131 L+S Y S + + + K+T+ + + R T P+ Sbjct: 64 LLSRYANEVTPAKRGAVSEKARINSI--VRCPISHRTLAKLTSSDVAGYRDERLKTVAPA 121 Query: 132 SAIQFLTSMRVLFKWAVRQE--YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + ++ L ++ + A R+ +V NP V RP R + + Q+ G Sbjct: 122 TVVRELNTISHAIEVATREWGLWVPRNPVKLVRRPPVPRGRTRRLKEGEEQRLLDACDRG 181 Query: 190 SQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247 P L +L +G+R + +H+ T + + Sbjct: 182 RTPLLKPLIILAIETGMRRGELLDLRWEHIDLKRGVAHLPLTKNG-DSRDVPLSCRAVQT 240 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHE 306 + ++ M + F+ +AG+ + H +R + + + G E Sbjct: 241 LQELRSAGVRHDRVFSMTGNSVRLAFEHLRVRAGMSDLHFHDLRHEAISRLFEKGLNIAE 300 Query: 307 LMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 + A G + + + YT + R+ Sbjct: 301 VSAISGHRELKMLQRYTHL-----RAVDLVARL 328 >gi|326390625|ref|ZP_08212180.1| integrase family protein [Thermoanaerobacter ethanolicus JW 200] gi|325993303|gb|EGD51740.1| integrase family protein [Thermoanaerobacter ethanolicus JW 200] Length = 399 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 53/394 (13%), Positives = 117/394 (29%), Gaps = 74/394 (18%) Query: 18 HGKIIYYFRK-------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 GK + R G + Y K ++ T Sbjct: 11 RGKDKWLVRIFLGYDENGKRKYHNKTIYGSKKDAEKYKIEKLNEINKGIFV---EPANIT 67 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG---VESR 126 LK + E+ K++ G + + S+ + I GD+ K+ I+ + ++ Sbjct: 68 LKEYLDEWIKTSLKGRVKATTYQSYVKIIELYIKPVLGDYKISKLNPLLIQDMLTNMMNK 127 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + + T ++ AV+ + ++ NPC +V+ PK+ + ++ T E ++F Sbjct: 128 NLSARTIRYTHTILKNALNQAVKWQIISNNPCNNVDLPKQTKQEMKVLTPEQAKKFLEAC 187 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----------------IFSIKTQKTG 230 + + FE LL SG+R ++ + + + + Sbjct: 188 VYN-RWGILFEVLLTSGMRPGEALGLKWEDIDFKNNRIYVKRNLTRTNDGWKLEEPKTPR 246 Query: 231 TIITVELPDGFMKLLAMTPIG-----------------------------------KETF 255 + T+ LP MK L + Sbjct: 247 SRRTIPLPKEVMKSLKEHKKNQTEEKLKAKETLNYDKDKDKFKPEEWQEKLKDPKVYIDY 306 Query: 256 FINNDKQKMNATQFSIWFKAK----ATKAGVN-KSAHGVRKFSATISADAGATAHELMAT 310 Q + + +A + + +R AT+ AG + Sbjct: 307 GFVFAAQNGSPLDMRKVVERYFKPLLKEANLPDIRLYDLRHTCATLLLAAGENPKVVSER 366 Query: 311 YGWKTVD-QAETYTKGADRIRLGIKNSRRISSVV 343 G + +TY+ + + + ++ ++ Sbjct: 367 LGHANITLTLDTYSHVLPD--MQKEAAAKLEEML 398 >gi|225023696|ref|ZP_03712888.1| hypothetical protein EIKCOROL_00560 [Eikenella corrodens ATCC 23834] gi|224943578|gb|EEG24787.1| hypothetical protein EIKCOROL_00560 [Eikenella corrodens ATCC 23834] Length = 285 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 39/250 (15%), Positives = 90/250 (36%), Gaps = 13/250 (5%) Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 +++ + +T I V + + S+ ++ +R + V + ++ Sbjct: 18 RLLPELRGVLLSDLTRDFIHQVVNQKNCSSSTKNRYFALIRAILNKCVNEWD-WLDKAPK 76 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220 ++ K + IR E+ Q+ + + F L +GLR ++ + + Sbjct: 77 LKLHKEPKKRIRWLYPEEAQRLVNALDSLPYMQHLVIFSLATGLRQANVLNLKWEQIDLR 136 Query: 221 IFSIKTQKTG----TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK 276 I V L M++L P + F ++ ++ + S ++ Sbjct: 137 RQVAWIYPDQAKAGKAIGVPLNHTAMQVLMDRPRVSDYVFTHSKGARVKSIS-SRVWREA 195 Query: 277 ATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 KAG+ + H +R A+ G L GW++V+ + Y L ++ Sbjct: 196 LEKAGITDFRWHDLRHTWASWLVQQGTPLAALKEMGGWESVEMVQRYAH------LAPEH 249 Query: 336 SRRISSVVDS 345 + + ++DS Sbjct: 250 LSQHARLIDS 259 >gi|260426671|ref|ZP_05780650.1| tyrosine recombinase XerD [Citreicella sp. SE45] gi|260421163|gb|EEX14414.1| tyrosine recombinase XerD [Citreicella sp. SE45] Length = 308 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 46/291 (15%), Positives = 90/291 (30%), Gaps = 33/291 (11%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGVES 125 I + ++ A N+ ++ R G ++ + E+ Sbjct: 4 AHWIGGFLEAQAAERGAADNTTAAYARDLADFTRWLTARGAGLDTAQRADVEDYLVTCEA 63 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 S+ + L+S++ L+++A + + NP + + P + + + E++ + Sbjct: 64 EGLAISTRARRLSSIKQLYRFAFEEGLRSDNPAVQISGPGKPKRLPKTLSIEEVDRLIEA 123 Query: 186 -----WSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVEL 237 +E + R A L +G+R ++ V + + + K G V L Sbjct: 124 AASQGRTEDDRLRNACLMQLLYATGMRVTELVTLPVSAARGDPRMLLIRGKGGKERMVPL 183 Query: 238 PDGFMKLLAMTPIGK----------------ETFFINNDKQKMNATQFSIWFKAKATKAG 281 LA + F + F + K A AG Sbjct: 184 SPPARVALATWLSRRDEQEAVAHAAGKPASVHLFPSRGKAGHLTRHAFYLLIKEIAVSAG 243 Query: 282 V---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 V + H +R AT GA + G V E YT + Sbjct: 244 VSPGKVTPHTLRHAFATHLLQNGADLRAIQTFLGHADVATTEIYTHVLEER 294 >gi|254696281|ref|ZP_05158109.1| site-specific tyrosine recombinase XerD [Brucella abortus bv. 2 str. 86/8/59] Length = 307 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 37/289 (12%), Positives = 82/289 (28%), Gaps = 33/289 (11%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR---K 127 I + + A N+ S+ + + + + T HIR +++ Sbjct: 6 AIENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKGVNLAEAETGHIRMTLDTMAAQG 65 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185 P+S + L+++R F++ + + +P + PK++ + + E++ + Sbjct: 66 FAPTSQARRLSALRQFFRFLYSEGFRQDDPTGILYAPKKQKPLPKIMSVENVGKLLDRAA 125 Query: 186 -----------WSEGSQPRLAFEFLLYSGLRCSDSC-------RAGVQHLQNNIFSIKTQ 227 + + E L +GLR S+ R + L K + Sbjct: 126 LEANEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKGSKDR 185 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-- 285 L + G + + F + Sbjct: 186 MVPLSRKARDALQKFLTLRDSLPGSDDNPWLFPTFSESGHLARQVFARELKGLAARAGLA 245 Query: 286 -----AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 H +R A+ GA + G + + YT + Sbjct: 246 ASSASPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEER 294 >gi|229115620|ref|ZP_04245025.1| Integrase/recombinase [Bacillus cereus Rock1-3] gi|228667762|gb|EEL23199.1| Integrase/recombinase [Bacillus cereus Rock1-3] Length = 305 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 34/282 (12%), Positives = 80/282 (28%), Gaps = 27/282 (9%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHI----RSG 122 L+++I +Y + LA + S+ ++ R + IT I Sbjct: 4 LRFMIKDYLEDKELSGLAPRTIQSYGDTLNEFSRWLVAEKEIINIEDITPPVIKGYLLYC 63 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQ----------EYVAINPCLSVERPKRKTEGIR 172 + R +T + L ++ F++ + + + + + Sbjct: 64 SKERGNTVVTRNGKLQHLKTFFRYLEDEDIIEIRSNPTNKIKPAKTDKTIKVYSDEQIKQ 123 Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KTGT 231 + + + L +G+R + + +I K Sbjct: 124 MLRYYRRMRSRENTLYSYRGHTVIVVLAGTGIRLGELVSMRWDSVDLLNKTITIFGKNRK 183 Query: 232 IITVELPDGFMKLLAMTPIGKETFF--------INNDKQKMNATQFSIWFKAKATKAGVN 283 ++ L D + L + E ++ ++ + + F + + G Sbjct: 184 SLSTPLTDKVARELYEWRLFCEKYYIKLPAHVFNDHRGNPLTVNAVKLMFTRLSVRMGFK 243 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 +AH R A+ AG + L + E Y Sbjct: 244 TTAHMFRHTYASNCLRAGMDIYTLSKLMHHSQIRTTEVYLHA 285 >gi|120609495|ref|YP_969173.1| phage integrase family protein [Acidovorax citrulli AAC00-1] gi|120587959|gb|ABM31399.1| phage integrase family protein [Acidovorax citrulli AAC00-1] Length = 326 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 40/309 (12%), Positives = 78/309 (25%), Gaps = 42/309 (13%) Query: 77 EYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHTPSS- 132 Y + LA + + ++ + D ++ T HIR V S Sbjct: 17 RYLEHVRVEKRLAERTVTLYTLDLAKLAASARDAGVPLLQLQTAHIRRFVAQMHAGGRSG 76 Query: 133 --AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----- 185 L+ R F WA RQ V NP V P+ + +D + F Sbjct: 77 RGIALILSGWRGFFAWAARQGLVPHNPVQGVRAPRAPKPLPKALGVDDAVRLAEFEGSSG 136 Query: 186 --WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 ++ E L GLR + + + + K Sbjct: 137 SDPWLEARDAAMVELLYGCGLRVGELAGLDAVPGPDTQRQGRGWIDLEAAEAHVFGKGSK 196 Query: 244 LLAMTPIGKETFFINNDKQ------------------------KMNATQFSIWFKAKATK 279 ++ + + ++ + ++ Sbjct: 197 RRSVPVGSAALAALRAWLEVRLQPFGAASGRVDAALFLGRRGARLTGQSIWSRLRQRSQL 256 Query: 280 AGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG--IKN 335 AG+ H +R A+ + + G + + YT+ D L Sbjct: 257 AGLSTPVHPHMLRHSFASHLLQSSGDLRAVQELLGHANITTTQVYTR-LDFQHLAKVYDA 315 Query: 336 SRRISSVVD 344 + + Sbjct: 316 AHPRARRKP 324 >gi|58580222|ref|YP_199238.1| phage integrase family site specific recombinase [Xanthomonas oryzae pv. oryzae KACC10331] gi|58424816|gb|AAW73853.1| site-specific recombinase, phage integrase family [Xanthomonas oryzae pv. oryzae KACC10331] Length = 400 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 61/360 (16%), Positives = 113/360 (31%), Gaps = 38/360 (10%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 +T G RK + + YI + T++ Sbjct: 42 KTPSGTWKALVRKTGWPA-TAKTFRTKRDAEDWARRTEDEMVRGVYIQRAPSERMTIEDA 100 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-------- 126 + Y S S + +++ G + +T + I + R Sbjct: 101 LKRYLSEISPTK-RPASADSDARHAKPLMQNLGKYSLAALTPELIAKYRDDRLAGLDRKD 159 Query: 127 --------KHTPSSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTK 176 +P++ L + LF A+++ + NP S+ RP R T+ Sbjct: 160 AKGKPAPKPRSPNTVRLDLALLGHLFNVAIKEWGIGLTYNPVQSIRRPAPSPGRDRRLTR 219 Query: 177 EDMQQFKSFWSEGSQPRLAFEFL--LYSGLRCSDSCRAGVQHLQNNIFSIK------TQK 228 E+ + + S P L + L +G+R S+ + + ++ T Sbjct: 220 EEETRLMAAVDAHSNPMLGWIVRIALETGMRSSEITGLRRNQVDLDRRVVRLQETKNTMS 279 Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINN----DKQKMNATQFSIWFKAKATKAGVN- 283 +TVE F + L +T I K A QF+ + AGV Sbjct: 280 RTVPLTVEATRLFREALNNPVRPIDTNLIFFGEPGRDNKRRAYQFNPIWTRIKKDAGVPD 339 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343 H +R + + +AG + E+ A G K++ + YT ++ VV Sbjct: 340 FRFHDLRHEAVSRFVEAGLSDQEVAAISGHKSMQMLKRYTHL-----RAEDLVGKLDQVV 394 >gi|283458429|ref|YP_003363053.1| site-specific recombinase XerD [Rothia mucilaginosa DY-18] gi|283134468|dbj|BAI65233.1| site-specific recombinase XerD [Rothia mucilaginosa DY-18] Length = 437 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 41/231 (17%), Positives = 73/231 (31%), Gaps = 31/231 (13%) Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 P+S + + ++R + V V +P V PK + + ED+Q+ + Sbjct: 187 LPLGPNSIARTMAAVRGAHAFWVSALIVPTDPAAPVTPPKNVKRLPKAVSVEDIQRLLAV 246 Query: 186 WSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--------------NIFSIKTQ 227 G + R EFL +G R S+ A + + + Sbjct: 247 PDRETATGLRNRAILEFLYATGARVSEMLNADIDDVHFEGTLTDEDGNQITLPGYVRLFG 306 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETF-----------FINNDKQKMNATQFSIWFKAK 276 K V + K + + F+N ++ + K Sbjct: 307 KGNKERLVPIGSYAQKAIQDYLVRARPSLVAHGKGTAALFVNGRGGRLGRQGAWLILKEA 366 Query: 277 ATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 A AG+ + S H +R AT GA + G ++ + YTK Sbjct: 367 AEAAGLSSDFSPHSMRHSFATHLLQGGADIRVVQELLGHASIATTQVYTKV 417 Score = 45.1 bits (105), Expect = 0.014, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 4/61 (6%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGVESR 126 L+ I +Y + ++ S+ + G D +ITT +RS + Sbjct: 40 LQKAIDQYLIHLRVERGSSEHTIASYARDLRRYSAYMATLGVIDPERITTAQVRSFMREL 99 Query: 127 K 127 Sbjct: 100 A 100 >gi|258622840|ref|ZP_05717857.1| tyrosine recombinase XerC [Vibrio mimicus VM573] gi|258584901|gb|EEW09633.1| tyrosine recombinase XerC [Vibrio mimicus VM573] Length = 266 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 35/251 (13%), Positives = 81/251 (32%), Gaps = 18/251 (7%) Query: 99 FDQIIRKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155 + + + G + ++ +R V + + SS L+S+R + + + + Sbjct: 1 MARYLAQMGLTSWPQLDAAWVRQLVVLGKRQGMKASSISTRLSSLRSFLDFLILRGELQA 60 Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRA 212 NP V P+++ + ++M Q + + R E + SGLR ++ Sbjct: 61 NPAKGVSAPRKQRPLPKNLDVDEMAQLLEVTDDDPLSIRDRAIMELMYGSGLRLAELVSI 120 Query: 213 GVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFINNDK--------QK 263 V+ + I+ V + + + +++ + Sbjct: 121 DVKDVNLRDGEIRVIGKGNKERKVWFAGQAQEWVGNWLKLRSQLANSDETALFVSKLGTR 180 Query: 264 MNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321 ++ K V + S H +R AT ++ + G + + + Sbjct: 181 ISHRSVQKRMAEWGQKQAVASHISPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQI 240 Query: 322 YTKGADRIRLG 332 YT D L Sbjct: 241 YTH-LDFQHLA 250 >gi|77359067|ref|YP_338642.1| site-specific recombinase [Pseudoalteromonas haloplanktis TAC125] gi|76873978|emb|CAI85199.1| site-specific recombinase [Pseudoalteromonas haloplanktis TAC125] Length = 315 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 43/282 (15%), Positives = 94/282 (33%), Gaps = 26/282 (9%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKH--- 128 L S+Y K + ++ + S D+ + +HIR + + Sbjct: 22 LFSDYLKFE--RQYSAHTVNQYVSQLGFAALYFSKLCDDWFSVQGEHIRRYSMALRSKQL 79 Query: 129 TPSSAIQFLTSMRVLFKW----AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + + L+ +R L+K+ + ++ NP + ++ PK + + M + Sbjct: 80 SGRTISLKLSCIRSLYKFLKAKNIAKQAHYHNPAVGIKGPKFAKPLPKNLDVDQMARLLE 139 Query: 185 FWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDG 240 + + + E + SGLR S+ A +Q + I K + + Sbjct: 140 IPDDEPLAIRDKAMMELMYSSGLRISELVGANLQDISAANGEILVRGKGNKERLIPVGSK 199 Query: 241 FMKLLAMTPIGKETFFINN--------DKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290 + L I + F + K +++ Q + + K G+ H +R Sbjct: 200 ALNALKKWLIIRPQFANPDEVAVFLSSKKNRISVRQVRLRMQEWGIKQGISSQVHPHKLR 259 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 A+ ++ + G ++ + YT D L Sbjct: 260 HSFASHILESSGDLRAVQELLGHSSLSATQVYTH-LDFQHLA 300 >gi|116619488|ref|YP_821644.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] gi|116222650|gb|ABJ81359.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] Length = 303 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 46/273 (16%), Positives = 88/273 (32%), Gaps = 24/273 (8%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-----ITTKHIRSGVESRKH- 128 I Y + + +S ++ES Q + D I +R + Sbjct: 13 IVLYLEDLARAGNSEHSIRAYESDLRQFLAFLSPPDLAPPAPAAIDLLILREWLAGLYRD 72 Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ----- 181 + + + L ++R LF++ +R+ V +N V PK + T + + Sbjct: 73 DLSAVTLRRKLAAVRGLFRFLLREGVVPLNVACLVRTPKAPKKLPEVMTADQVNSLIDGV 132 Query: 182 --FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELP 238 + ++ R FE L G+R S+ ++ + ++ + V LP Sbjct: 133 GGVELERPHPARDRAIFELLYGCGIRVSELAGLNLEDIDRTEGWLRVRGKGKKERQVPLP 192 Query: 239 DGFMKLLAMT------PIGKETFFINNDKQKMNATQFSIWFKAKATKA--GVNKSAHGVR 290 + L + F+N+ + ++ S K AT H R Sbjct: 193 GQAAQSLERYLAERPVAREQPAVFVNHRRARLTTRGISGIVKLYATYLSNDPGIHPHSFR 252 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYT 323 AT GA + G + + YT Sbjct: 253 HAYATHLLADGADLRAIQELLGHARLSTTQKYT 285 >gi|160945433|ref|ZP_02092659.1| hypothetical protein FAEPRAM212_02955 [Faecalibacterium prausnitzii M21/2] gi|158443164|gb|EDP20169.1| hypothetical protein FAEPRAM212_02955 [Faecalibacterium prausnitzii M21/2] Length = 357 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 43/312 (13%), Positives = 86/312 (27%), Gaps = 25/312 (8%) Query: 57 KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKI 114 + + K T++ ++K +L+ S + + R GD I Sbjct: 37 RNRDLRPAAKANPTIQQAFERFQKYNRLKNLSQGSLDFYVAKGRSFFRFLGDTEQPINTI 96 Query: 115 TTKHIRSGVESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCL------SVERPK 165 T + + + K ++ L +R W + + Y+ P ++ P Sbjct: 97 TEETVEDYIFYMKDQQLHDTTINTNLRMVRAFLYWCMEKGYLEKYPIRLVRADDPIKEPY 156 Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225 E + + D + + + FLL +G R S + L + Sbjct: 157 TTDELQKLLKEPDCKTCSFAEY---RNWVIVNFLLGTGCRASTLLNLQIGDLDLFAGT-V 212 Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINN--------DKQKMNATQFSIWFKAKA 277 + ++ L+ + E + +M Sbjct: 213 FFRHMKARNQQIVPLSKALVKIMEEYLEHRTSDPTAPLFVSEYGNQMTLNSLGNAIWNYN 272 Query: 278 TKAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKN 335 GV K+ H R A + AG L G + Y AD +R Sbjct: 273 HSRGVEKTSMHLFRHTYAKLYIQAGGDPFRLQKLLGHADLTMTRRYVALYADDLRANYDA 332 Query: 336 SRRISSVVDSDD 347 + + + Sbjct: 333 LNPLEQLTRQNR 344 >gi|328462457|gb|EGF34479.1| tyrosine recombinase xerD [Lactobacillus rhamnosus MTCC 5462] Length = 182 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 50/160 (31%), Gaps = 13/160 (8%) Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLL 245 G + R FE + +GLR S+ + L + T K V + + Sbjct: 9 PLGLRDRAIFELMYATGLRVSEVVGLRLDQLHLAMNLLQVTGKGDKERLVPISPQAADWV 68 Query: 246 AMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293 + F+N + KA G+ K + H +R Sbjct: 69 NRYLQESRPRLIKHQQPKAVFVNFHGHALTRQAIWKNLKAYIASVGIEKDVTPHTLRHSF 128 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 AT + GA + G + + YT +++ + + Sbjct: 129 ATRLLENGADLRVVQELLGHSDISTTQIYTHLSNQHLVAV 168 >gi|260577125|ref|ZP_05845103.1| integrase family protein [Rhodobacter sp. SW2] gi|259020703|gb|EEW24021.1| integrase family protein [Rhodobacter sp. SW2] Length = 358 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 66/341 (19%), Positives = 116/341 (34%), Gaps = 28/341 (8%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKGHGR-----RIRLPY-PHESTFIPAYMSALTGSTPK 57 + LP V G+ +Y+++G G RIRLP P F A A P Sbjct: 3 KISLPRHVH-HVISGGRDYFYYQEGRGTPHQGERIRLPDKPQTPEFWNAVRQAQGTFGPT 61 Query: 58 REYINSPRKKPTTLKWLISEYRKSAH--WGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115 T+ LI Y + L+ ++ + + GD R + Sbjct: 62 P---------TDTVGALIDAYEGAWPTLQRKLSKGTQEQYRRNLKPSRKAWGDLPARDLR 112 Query: 116 TKHIRSGVESRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 KH+ + + P +A L +++ L +WA + + K G PW Sbjct: 113 PKHVDALIRKIGAERPGAANNVLDALKALCRWANGPVDLLAHDPTKGVHRFEKGAGHEPW 172 Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ----KTG 230 T+ + + ++ R + Y+G R SD R + + FS++ + K Sbjct: 173 TEAQLAFAEQTFT--GPLRRYYFLSRYTGQRISDVVRLNPGDVDDGGFSLRQKKTGVKPW 230 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHG 288 I EL + + + Q F A+ K + HG Sbjct: 231 CPIFAELETEMATWERRLGPYLLQEIGKSAGKPFSTNQMWKAFDAERAKHPILAGAVPHG 290 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R + G +A ++ G +V+ E Y + +DR Sbjct: 291 LRANAVIRLRVGGYSALQISDMVG-MSVEMVEHYCRHSDRK 330 >gi|228915207|ref|ZP_04078802.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228844438|gb|EEM89494.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 369 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 50/366 (13%), Positives = 117/366 (31%), Gaps = 44/366 (12%) Query: 17 RHGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + G G+R + + +T A + + TL Sbjct: 7 KRGNKYCIVIDIGPDPETGKRRQKWFSGYNTKKEAEKD-VAKKITELNEGTFIEPSKVTL 65 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 K ++ + + S+ ++ + + + + +I G K+ HI+ ++ + Sbjct: 66 KEYLNHWLE-IKSMSIESSTFVVYRACINQHVIPSIGMITLHKLNVMHIQKCYKTAINKG 124 Query: 131 SSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + L ++ AV+Q + NP E PK++ I+ WT+E++++F Sbjct: 125 IANNSILLMHRILKSALNLAVKQNIITRNPSAFAEIPKKERTSIQTWTEEEVKKFLLHSQ 184 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--------------TGTII 233 E S+ + + + +G+R + Q + ++ + + Sbjct: 185 E-SRYHIGYLLAITTGMRMGEVLGLRWQDVDFEKHTVTINQTSGHDNKIKKTAKTNSSKR 243 Query: 234 TVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKAKATK 279 T+ +P ++ L ++ N + + F F + K Sbjct: 244 TIPVPKETIESLKRHKILINKEKLRFGSAYQDQDLINCNEFGKIIKKAHFRKCFIRETHK 303 Query: 280 AGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSR 337 AG+ H +R ATI G + G + Y+ + + + Sbjct: 304 AGIKEIKFHDLRHTHATILLKQGVNPKIISERLGHTDISMTLSVYSHVLPN--MQEEAVK 361 Query: 338 RISSVV 343 + Sbjct: 362 NFGKSI 367 >gi|15897309|ref|NP_341914.1| XerC/D integrase-recombinase protein (xerC/D) [Sulfolobus solfataricus P2] gi|284174561|ref|ZP_06388530.1| XerC/D integrase-recombinase protein (xerC/D) [Sulfolobus solfataricus 98/2] gi|13813520|gb|AAK40704.1| XerC/D integrase-recombinase protein (xerC/D) [Sulfolobus solfataricus P2] gi|261601982|gb|ACX91585.1| integrase family protein [Sulfolobus solfataricus 98/2] Length = 291 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 45/272 (16%), Positives = 93/272 (34%), Gaps = 30/272 (11%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV-------- 123 L + + + + + + + + D RK+T++ + + Sbjct: 12 GDLYNAFINALIIAGAGNGTIKLYSTAVRDFLDFI-NKDPRKVTSEDLNRWISSLLNREG 70 Query: 124 -------ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 E ++ + ++ ++R KW N + PK + + ++ + Sbjct: 71 KVKGDEVEKKRAKSVTIRYYIIAVRRFLKWI--------NVSVRPPIPKVRRKEVKALDE 122 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIIT 234 +Q+ + ++ +L LL +GLR ++ V+ + NN+ ++ K G Sbjct: 123 IQIQKVLNACKR-TKDKLIIRLLLDTGLRANELLSVLVKDIDLENNMIRVRNTKNGEERI 181 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSA 294 V D LL GK+ D + K K G++ H +R A Sbjct: 182 VFFTDETKLLLRKYIKGKKAEDKLFDLK---YDTLYRKLKRLGKKVGIDLRPHILRHTFA 238 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGA 326 T+S G L G K + + YT Sbjct: 239 TLSLKRGINVITLQKLLGHKDIKTTQIYTHLV 270 >gi|239907872|ref|YP_002954613.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1] gi|239797738|dbj|BAH76727.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1] Length = 374 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 47/360 (13%), Positives = 104/360 (28%), Gaps = 46/360 (12%) Query: 16 TRHGKIIYYFRKGHGRRIRLPYPHESTF---IPAYMSALTGST--------PKREYINSP 64 R G+ + ++ G+R + A+ A++ + P + I+SP Sbjct: 5 DRDGRWMVFYHDETGKRRDKSFGRGEEAYAQAEAFNKAVSDAKKLCTALPLPPTDLISSP 64 Query: 65 RKKP-------------------TTLKWLISEYRKSAHWGSLAVN-SRISFESYFDQIIR 104 P T + L +Y N ++ + +Q Sbjct: 65 APAPVKMIEEITLPEKTIQSGQGMTFRELAGKYLAHLKVSGRTENNTKKLAKMIDNQFNP 124 Query: 105 KSGDFDYRKITTK-------HIRSGVESRKHTPS---SAIQFLTSMRVLFKWAVRQEYVA 154 GD +T +++ P + ++ + +F + V Sbjct: 125 IIGDRVVNSMTYIDDMVPFIQFFQETNGKQNRPRSQPTVNRYGDYVNAIFNFGVTTGLTT 184 Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214 +NP ++ R+ T +D+++ + + F L + S+ Sbjct: 185 VNPMKGRKK-SREKPRDVQLTVDDVKRIMDHAEPHVRWAMEVCFSLGTRPGESELLALKW 243 Query: 215 QHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-FSIWF 273 H+ + K + T +P L M + E+ + + F Sbjct: 244 DHIDFDKGIAKIYASKTRTYRVVPISPTLLGKMKEVKTESQSGYVIEWRGQPIGMIRKGF 303 Query: 274 KAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIR 330 + +AG+ + +R AT GA + G + Y + + Sbjct: 304 RRACERAGITYPVRMYDLRHLFATTMLSKGADLAAVSKLLGHSMISTTTSHYYHCLEGEK 363 >gi|89054975|ref|YP_510426.1| phage integrase [Jannaschia sp. CCS1] gi|88864524|gb|ABD55401.1| phage integrase [Jannaschia sp. CCS1] Length = 304 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 40/283 (14%), Positives = 93/283 (32%), Gaps = 26/283 (9%) Query: 73 WLISEYRKSAHWGSLA-VNSRISFESYFDQ----IIRKSGDFDYRKITTKHIRSGVESRK 127 I+ Y +A A N+ +++ + + G + + +G+E++ Sbjct: 9 DWIALYLDAAAAEQGAARNTLLAYGRDLKDAMMSVRKSGGFAGADRAALEAYIAGLEAQG 68 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185 ++ + L+S++ L+++A + + NP L + P R + + E++ Sbjct: 69 LAAATRARRLSSLKQLYRFAHEEGWREDNPTLQITGPARTRKLPGTLSLEEVDALLEASA 128 Query: 186 -----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-----------IKTQKT 229 ++ + + L +GLR ++ + L+ + + Sbjct: 129 TYGRNDADRLRNHCLMQILYATGLRVTELVSLPITALRGDPNMLLVLGKGGKERMVPLSP 188 Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSA 286 + + P F + + +F K + AG++ + Sbjct: 189 PARTAMAAWLDHLDATQEEPRSLFAFPSHGKSGHLTRVRFFTLIKELSASAGIDPARVTP 248 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 H +R AT GA + G + E YT D Sbjct: 249 HTLRHAFATHLLQNGADLRAIQTLLGHADIATTEIYTHILDER 291 >gi|28493064|ref|NP_787225.1| integrase/recombinase [Tropheryma whipplei str. Twist] gi|28476104|gb|AAO44194.1| integrase/recombinase [Tropheryma whipplei str. Twist] Length = 349 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 40/299 (13%), Positives = 86/299 (28%), Gaps = 59/299 (19%) Query: 86 SLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSG--VESRKHTPSSAIQFLTSM 140 L+ + ++ + + G+ ++ + I R S+ + ++ Sbjct: 34 GLSDATLQTYRNSLGIYLSWLGEQGTQRLSEVNSNAIERFLEYRQRHTRKSTLANTVAAL 93 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK------SFWSEGSQPRL 194 R + V + +NP +++PK P + +++ + R Sbjct: 94 RTFHRHLVLEGRQTLNPTEKLQQPKVPKTLPHPLSLDEIINLLKAADTNQAREISLRDRA 153 Query: 195 AFEFLLYSGLRCSDSCRAGVQHL--------------QNNIFSIKTQKTGTIITVELPDG 240 E L +G R S++ V + + L Sbjct: 154 LIEVLYGTGARISEAVSLNVNAFAESDQNLLRLTGKGNKQRMVLFGSYARNAVDNYLQHS 213 Query: 241 FMKLLAMTPIGKE--------------------------------TFFINNDKQKMNATQ 268 KLLA + + + F++N +++ Q Sbjct: 214 RPKLLARSHVYRNITDASTLKYRPTSSTIGDAEDGVLTATAAGVPWLFLSNRGKRLTRQQ 273 Query: 269 FSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 + A + + S H +R AT AGA + G +++ YTK Sbjct: 274 AGNIIRKLGEAAEIGRYISPHSLRHSFATHMLQAGADIRTVQELLGHSSINTTSVYTKV 332 >gi|315125203|ref|YP_004067206.1| site-specific recombinase [Pseudoalteromonas sp. SM9913] gi|315013716|gb|ADT67054.1| site-specific recombinase [Pseudoalteromonas sp. SM9913] Length = 314 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 40/282 (14%), Positives = 94/282 (33%), Gaps = 26/282 (9%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKH--- 128 L S+Y K + ++ + S ++ + ++HIR + + Sbjct: 21 LFSDYLKFE--RQYSAHTVNQYVSQLGFAALYFNKLCDNWFAVQSEHIRRYSMALRAKQL 78 Query: 129 TPSSAIQFLTSMRVLFKW----AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + + L+ +R L+K+ + ++ NP ++ PK + + M + Sbjct: 79 SGRTISLKLSCIRSLYKFLKAKNITEQPHYHNPAQGIKGPKFAKPLPKNLDVDQMARLLE 138 Query: 185 FWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDG 240 + + + E + SGLR S+ A +Q + I K + + Sbjct: 139 IPDDDPLAIRDKAMMELMYSSGLRISELVGANMQDINARNGEILVRGKGAKERLIPVGSK 198 Query: 241 FMKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKAGV--NKSAHGVR 290 ++ L + F ++ +++ Q + + K G+ H +R Sbjct: 199 ALEALKKWLAVRPLFMGADEHAVFLSSKKNRISVRQVRLRMQEWGIKQGISSQVHPHKLR 258 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 A+ ++ + G ++ + YT D L Sbjct: 259 HSFASHILESSGDLRAVQELLGHSSLSATQVYTH-LDFQHLA 299 >gi|209550058|ref|YP_002281975.1| integrase family protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535814|gb|ACI55749.1| integrase family protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 345 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 58/305 (19%), Positives = 104/305 (34%), Gaps = 21/305 (6%) Query: 21 IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK 80 YY +G G P F Y+ + T+ LI E+RK Sbjct: 22 TYYYAWRGKGAPRMHAKPGTKAFTQEYVRLTREREKA--------SEDGTIGSLIDEFRK 73 Query: 81 SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI----TTKHIRSGVESRKHTPSSAIQF 136 +A + LA ++R +E F I K F + I + + + ++ + +P SA Sbjct: 74 TAGYMKLAASTRRDYERQFAMIRLKFEGFPIKAIEARGSRRIFLNWRDTMRDSPRSADMH 133 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196 + + LF WA E + NP VER T WT + + + + R Sbjct: 134 IALLSRLFSWAKGNEVILRNPLEEVERLHSGTRKDIIWTDDQLAKLLTEGV--PHLRNVA 191 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF 256 L++ R +D SI+ KTG + V + +L Sbjct: 192 LVALWTMQRQADILSMPTLAFDGERVSIRQGKTGARVRVMAAPDILPVLKDAKTTSRQRV 251 Query: 257 -INNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA-----GATAHELMA 309 +N+ Q ++ F ++ + + G+ + H +R + T + + Sbjct: 252 LVNSFGQNWTSSGFRASWRKEMARLGIKGVTFHDLRGTAITFAYANLDKAHDEKIKLISE 311 Query: 310 TYGWK 314 G Sbjct: 312 ISGHS 316 >gi|262046512|ref|ZP_06019473.1| integrase [Lactobacillus crispatus MV-3A-US] gi|260572961|gb|EEX29520.1| integrase [Lactobacillus crispatus MV-3A-US] Length = 388 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 34/362 (9%), Positives = 92/362 (25%), Gaps = 45/362 (12%) Query: 15 RTRHGKIIYYFRKGHG-------------RRIRLPYPHESTFIPAYMSALTGSTPKREYI 61 R R F K ++ + Y + ++ + Sbjct: 5 RKRGKTWYVRFSKRETQWDPEKQKNVSILKQKSKGGFKTKSEAQQYGIKMEAASIDGVDV 64 Query: 62 NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121 K + + + + +++ + + + + + G + I+ +S Sbjct: 65 ----VKNPVFADYFEHWYLTFKFPIIRKSTQKRYITNYHYLEKYFGSTKIKDISRAKYQS 120 Query: 122 GVESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI--RPWTKE 177 + H P++ + ++ A+ + N + + Sbjct: 121 FLNWLGKNHAPATVRKTNIMVKACAGNAIEDGLIVKNFTNRTTITGNQDNVRAIEYLNEG 180 Query: 178 DMQQFKSFWSEGSQPRLAFEF----LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI- 232 +M + PR ++ L++G R + + I KT Sbjct: 181 EMNKLVQLCLTNLTPRYTSKYLVLAGLFTGARLGELTALKWTDIDFKNKIIDINKTWNPN 240 Query: 233 -------------ITVELPDGFMKLLAMTPIGKETFFINNDKQ--KMNATQFSIWFKAKA 277 +++ + L I F + +++ + + + Sbjct: 241 LKILGPTKTESSVRKIKVNSFLLDKLKQLKINNSEFIFAIPRTGLPPSSSAVNQFLRKAI 300 Query: 278 TKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGI 333 + G+NK H +R + G + G + Y D + Sbjct: 301 KEIGLNKPDFHFHSLRHTHVSYLISQGIDIAAISKRLGHANIAITLSIYAHLLDEYKDQQ 360 Query: 334 KN 335 Sbjct: 361 DA 362 >gi|307708146|ref|ZP_07644613.1| site-specific recombinase, phage integrase family [Streptococcus mitis NCTC 12261] gi|307615592|gb|EFN94798.1| site-specific recombinase, phage integrase family [Streptococcus mitis NCTC 12261] Length = 384 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 56/366 (15%), Positives = 108/366 (29%), Gaps = 55/366 (15%) Query: 11 VTKERTRHGKIIYYF-------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63 + K +T+ G I+YY G +R Y + L Sbjct: 3 IHKYKTKKG-ILYYVSFYIGLDAYGKKKRHLKRGFKTKKEAKLYEARLEAGVVAPTVSTD 61 Query: 64 PRKKPTTLKWLISEYRKSA---HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 T K L E+ + + + ++ + I+ GD +I+ + Sbjct: 62 KTNPKVTYKELYQEWFNAYVGTVEETTSSQTKNIYRI---HILPIFGDKFIDQISPLDCQ 118 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-IRPWTKEDM 179 + + + T + Q + +F +A+ Y+ NP +V PK K W+ E++ Sbjct: 119 NFITQKSQTFKNIKQIKSYTSKIFDFAINMNYIDRNPMKNVIMPKIKKTRSDNFWSLEEL 178 Query: 180 QQFKSFWSEGSQPRLAFEFLL--YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----- 232 F E + F L +SGLR + + + + K+ Sbjct: 179 HHFLDIVKETEPFKHFALFRLLAFSGLRKGELYALKWADINFDSNLLNIDKSLGRIDGKA 238 Query: 233 -----------ITVELPDGFMKLLAMTP--------------------IGKETFFINNDK 261 T+ L D + ++ N+ Sbjct: 239 IEKSTKNESSVRTIYLDDETIDIIKQWRNFYLKEQSQLPLTKLNISDEYMFSYISSNDKI 298 Query: 262 QKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA- 319 + ++A + K + S HG R AT+ ++ G G + Sbjct: 299 EPLHADYINNVLNRIIKKHKLKPISPHGFRHTHATLMSEIGIDPSNTSKRLGHASSQVTL 358 Query: 320 ETYTKG 325 + YT Sbjct: 359 DVYTHT 364 >gi|253988429|ref|YP_003039785.1| integrase/recombinase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253988435|ref|YP_003039791.1| integrase/recombinase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253990473|ref|YP_003041829.1| integrase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638960|emb|CAR67575.1| probable integrase/recombinase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779879|emb|CAQ83040.1| putative integrase/recombinase [Photorhabdus asymbiotica] gi|253779885|emb|CAQ83046.1| putative integrase/recombinase [Photorhabdus asymbiotica] gi|253781923|emb|CAQ85087.1| putative integrase [Photorhabdus asymbiotica] Length = 472 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 46/362 (12%), Positives = 115/362 (31%), Gaps = 47/362 (12%) Query: 10 FVTKERTRHGKII--------------YYFRKGHGRRIRLPYPHESTFIPAYMSALTGST 55 ++ + R +G+ ++ ++ +P +T T Sbjct: 73 YLARYRKTNGQPYTPDSQRRRLRALRLWFDWL--QQQHAIPTSPAATLAAPDRKKRPSVT 130 Query: 56 PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYR 112 ++ + TL+ ++ + ++ L+ ++ S+E G Sbjct: 131 ETHGQPDAIPARFATLRQHLAAWLEAVRGQGLSERTQESYEERLLPFISWCEARGVMTAP 190 Query: 113 KITTKHIRSGVESRK---------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163 +++ + S + ++P S L+ +R F+W +++ ++ NP ++ Sbjct: 191 QVSLPLLESYQRWLRSSRKANGQPYSPGSQRDRLSVLRQWFRWLLQRHHILYNPTDNMVL 250 Query: 164 PKRKTEGI-----RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218 P+ + T + G + R E L +G+R + + + Sbjct: 251 PREEKRLPAQVMNEDETHTVLAATDINTPTGLRNRAILEVLWSTGIRRMEVANLLLSEVD 310 Query: 219 NNIFSI--KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA- 275 + + K G V + + + L+ + D + T+ Sbjct: 311 FGRGVVLVRQGKGGKDRVVPIGEQALHWLSRWLSVRPELTRRGDSGHLFITKKGRGLARG 370 Query: 276 ---------KATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +A + + H R AT + GA + A G + ++ + YT+ Sbjct: 371 TLTQIAADSIRKQAQLAKPGACHLFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTR 430 Query: 325 GA 326 A Sbjct: 431 VA 432 >gi|303236694|ref|ZP_07323275.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] gi|302483198|gb|EFL46212.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] Length = 407 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 49/362 (13%), Positives = 96/362 (26%), Gaps = 28/362 (7%) Query: 1 MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60 M ++ + R + +Y K R + + Sbjct: 54 MMGKPKV--HIKHNRRKENLQLYLIAKPRTPAERQQNKETLELAAKIRAEREQQFKESML 111 Query: 61 -INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--------FDY 111 + + Y S L + ++ + Sbjct: 112 GYRLKKDRSINFLDYYQAYIDSYTKKDL-----RMIKIALNRFKDFLKEYYPLYEFSIKP 166 Query: 112 RKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169 IT + + VE + A + + ++A+ E + +PC V + Sbjct: 167 DLITKEMMERFVEYLQSRSVGEGAKSIYQRFKKVVRYAIDHEVMLKDPCKGVVCKVDEQI 226 Query: 170 GIRP---WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226 + + + +E R AF LY GLR D +++ +K Sbjct: 227 LRKDVLSMDEIQSLIQCHYENENPNVRRAFILCLYCGLRFCDVKDLTYKNIDYTNHLLKF 286 Query: 227 QKTGTIITVELPDGFMKL---LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 ++ T + L L + K +AG+N Sbjct: 287 EQNKTKGHSANSGVVIPLNDGLLSLIGEAPEDLDTSIFNLPTYESCCKSVKRWVKRAGIN 346 Query: 284 K--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 K S H R A + GA + + G + E YT+ D +L + + Sbjct: 347 KHISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVD--KLKSEAINSLPE 404 Query: 342 VV 343 + Sbjct: 405 LK 406 >gi|89098652|ref|ZP_01171534.1| tyrosine recombinase [Bacillus sp. NRRL B-14911] gi|89086614|gb|EAR65733.1| tyrosine recombinase [Bacillus sp. NRRL B-14911] Length = 260 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 33/237 (13%), Positives = 77/237 (32%), Gaps = 18/237 (7%) Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169 D + + + +K + SA + ++S+R +K+ R++ NP +V PK + Sbjct: 11 DVEYFDVRLYLTRLYEQKLSRKSAARKISSLRSFYKFLAREKLANDNPFSAVSLPKLEKR 70 Query: 170 GIRPWT----KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI- 224 + + ++ G + + E L +G+R S+ + ++ + + ++ Sbjct: 71 LPEFFYEEELNCLFESCETDSPLGKRNKALLELLYATGMRVSECSQISLKDIDMALSTVL 130 Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIG-----------KETFFINNDKQKMNATQFSIWF 273 K + L + + F+N + Sbjct: 131 VHGKGQKDRYIPFGSFAQDALELYITEGRKELLTGRESHDRLFVNFRGGPLTPRGIREIL 190 Query: 274 KAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 K+ + + H +R AT GA + G + + YT + Sbjct: 191 NKMIQKSSLEGTIHPHMLRHSFATHLLSNGADMRTVQELLGHAFLSSTQVYTHVTNE 247 >gi|332036156|gb|EGI72631.1| tyrosine recombinase XerC [Pseudoalteromonas haloplanktis ANT/505] Length = 314 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 42/282 (14%), Positives = 93/282 (32%), Gaps = 26/282 (9%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKH--- 128 L S+Y K + ++ + S D+ + +HIR + + Sbjct: 21 LFSDYLKFE--KQYSAHTVNQYVSQLGFAALYFSKLCDDWFGVQGEHIRRYSMALRSKQL 78 Query: 129 TPSSAIQFLTSMRVLFKW----AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + + L+ +R L+K+ + ++ NP + ++ PK + + M + Sbjct: 79 SGRTISLKLSCIRSLYKFLKAKNIAEQSHYHNPAIGIKGPKFAKPLPKNLDVDQMARLLE 138 Query: 185 FWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDG 240 + + + E + SGLR S+ A +Q + I K + + Sbjct: 139 IPDDEPLAIRDKAMMELMYSSGLRISELVGANMQDISAANGEILVRGKGNKERLIPVGTK 198 Query: 241 FMKLLAMTPIGKETFFINN--------DKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290 + L + F + K +++ Q + + K G+ H +R Sbjct: 199 ALDALKKWLTIRPQFAKPDEIAVFLSSQKNRISIRQVRLRMQEWGIKQGISSQVHPHKLR 258 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 A+ ++ + G ++ + YT D L Sbjct: 259 HSFASHILESSGDLRAVQELLGHSSLSATQVYTH-LDFQHLA 299 >gi|218290561|ref|ZP_03494670.1| integrase family protein [Alicyclobacillus acidocaldarius LAA1] gi|218239464|gb|EED06660.1| integrase family protein [Alicyclobacillus acidocaldarius LAA1] Length = 379 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 46/355 (12%), Positives = 110/355 (30%), Gaps = 45/355 (12%) Query: 15 RTRHGKIIYYF----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 + G + R +G+R + + +T A A+ + + T Sbjct: 5 VRKRGNKWCFVIDVGRDENGKRKQKWFSGYATKKEA-EKAMAAKLQEIVSGVYVAENNDT 63 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH- 128 ++ + + + + ++ +E II G + + +H+++ + Sbjct: 64 VETYLRNWLEDKRSQ-VRPSTYRGYEWLVRVHIIPHLGGIELSDLRPQHLQALYRKLQSL 122 Query: 129 ----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + + + + AV+ VA N +V+ P+ + WT ED++ F S Sbjct: 123 DKPLSNRTILHIHLLLHEALDRAVKWGMVARNVADAVDPPRPEVRRSIVWTPEDVRAFLS 182 Query: 185 FWSEG-SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------------ 231 E ++ AF + +G+R + + + ++ +T T Sbjct: 183 ANEEAEARYYAAFVLAVMTGMRKGEILGLRWSEIDWDSAVVRINQTLTWTKQGPILQEPK 242 Query: 232 ------------------IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273 L L + F + + ++ + Sbjct: 243 TDRSRRSVALSPETIVALRRHHALQAQERLLYGTEYKDHDLVFARPNGEPLHPRTLDNAW 302 Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA 326 +A V + H +R A++ G + G T++ +TY+ Sbjct: 303 YRALKRANVPRIRFHDLRHTHASLLLAQGVHPKIVSERLGHSTINITLDTYSHVL 357 >gi|78355959|ref|YP_387408.1| integrase/recombinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78218364|gb|ABB37713.1| integrase/recombinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 304 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 43/292 (14%), Positives = 91/292 (31%), Gaps = 30/292 (10%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY----RKITTKHIRSGVESRKHT-- 129 + + + ++ + R + + R IT + + T Sbjct: 15 EAFCARLSAEGRSPATIAAYRRDLALVARVADELAPGIICRAITAGLLDRAFSAGAVTES 74 Query: 130 ---PSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 P SA + ++R F WA V NP S+ + + T + ++ Sbjct: 75 GRGPRSAASLHRMKAAVRAFFAWASEAGVVDDNPARSIRMHRLPRKLPVFLTTAEKKRLL 134 Query: 184 -----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 + R E LL +G+R + + + + ++ + G + V+ Sbjct: 135 KELKGRTDFSALRDRAMIEVLLGTGIRLGELAALDMDDIDLDAKHLRVRAKGNVPQVKFI 194 Query: 239 DGFMKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWFKAKATKAGVNK--SAH 287 ++ L + + + + ++ Q + KAG+ K + H Sbjct: 195 KTDLRTLLRRYLAERRRHGRPEMEALFLSNRDGRLCQRQIANRLAHWLRKAGIEKELTPH 254 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 G+R AT A + G + V + YT D + R+ Sbjct: 255 GLRHTFATHLYGATNDLLVVQRALGHRDVSTTQIYTHLVDGQ--LEEALERL 304 >gi|254437180|ref|ZP_05050674.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 307] gi|198252626|gb|EDY76940.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 307] Length = 369 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 47/320 (14%), Positives = 104/320 (32%), Gaps = 16/320 (5%) Query: 9 PFVTKERTRHGKIIYYFRKGHG--RRIRLPYPHESTFIPAYMSALT-GSTPKREYINSPR 65 + + K Y+ + G +RI + + A +AL R + + Sbjct: 38 KGLVLFVGKRSKTWYFQKDVGGQTKRILIGRFPIISAQAARQTALGFALEMGRGAGKAAQ 97 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 TL+ + Y + ++I + ++ +I+ Sbjct: 98 IGAPTLEAAMEVYLARPKLR--SETNKIGMRAQLTLHLKDWMRLPLGEISKTMTVRRHHD 155 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + S+A L S R ++ A R + P +++E + K +G R + Sbjct: 156 MAGSSSAANHVLRSFRAIYNHARRTCDLPECPTMAIEWFEDKPDG-RIIEDLKHWRQTID 214 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 R+ +E LL++GLR ++ + +Q + + K G + + ++L Sbjct: 215 DLPNPIHRVFYELLLFTGLRKTEVFTLKWEQIQEDHIHLPMTKNGRSFDLPILQLHHEIL 274 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAH 305 A + + S + + H R+ AT++ +AG Sbjct: 275 APLRPLSRDWVFP------SPKSESGHITRPER---LKYNPHMHRRTFATVAMEAGVLEE 325 Query: 306 ELMATYGWKTVDQA-ETYTK 324 + + + YT+ Sbjct: 326 IVGRLLNHTPLSITGQRYTR 345 >gi|13476600|ref|NP_108170.1| integrase [Mesorhizobium loti MAFF303099] gi|14027362|dbj|BAB53631.1| integrase [Mesorhizobium loti MAFF303099] Length = 343 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 65/314 (20%), Positives = 112/314 (35%), Gaps = 23/314 (7%) Query: 12 TKERTRHGKII-YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 K + G YY+ G +I PH F Y +TPK T Sbjct: 11 VKRKLADGSTRVYYYAWRGGPKIE-AKPHTEAFALEYAKLKALATPKIVE---------T 60 Query: 71 LKWLISEY-----RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT----TKHIRS 121 L+ LI + +++ + +LA ++ F I K R IR Sbjct: 61 LETLIDRFTGPEDKRNPDFLALADTTQTDHLYAFRLIKEKWPKLPVRLTQQKGMKAEIRK 120 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 S P A + L S+ +F +AV E + NPC +ER + W++E ++ Sbjct: 121 WHRSFAANPRKADKLLFSLSKVFSYAVADELIDKNPCTGIERLYNGSRRESVWSQEQIKA 180 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 F+ + LAFE L++G R D + + K G + V + Sbjct: 181 FR--AGAPAHLLLAFEMALHTGQRQGDLLSRSWKDYDGIYLQFRQSKGGKKLKVRVHSKL 238 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300 +L + K +N+ K+ F + + T+ + + H +R T A Sbjct: 239 KAMLDVLDKDKMRILLNSRKRPWTKDGFKTSWGKECTRLQIEGVTFHDLRGTFITERARE 298 Query: 301 GATAHELMATYGWK 314 G++ ++ G Sbjct: 299 GSSVEDIAKISGHS 312 >gi|302188726|ref|ZP_07265399.1| Phage integrase:Phage integrase, N-terminal SAM-like protein [Pseudomonas syringae pv. syringae 642] Length = 344 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 52/329 (15%), Positives = 106/329 (32%), Gaps = 20/329 (6%) Query: 10 FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 + K + R G + YY+ G R +P + + L K ++ ++ Sbjct: 13 RLRKRKQRSGVVYYYYDLGGSPRKEIPLGSDYGMAIVEYAKL----EKSRTSSALVQQVL 68 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRK 127 T ++ +Y + ++ Q+++ D I +H+ + R Sbjct: 69 TFAYVAEKYMAEVVPTK-SPATQKDNARELKQLLKFFDDPPAPLEAIEPQHVVQYLRQRG 127 Query: 128 HT-PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 T P A + + ++ + + K E R ED + Sbjct: 128 KTAPVRANREKALLSAIWNF--ARSAGYTALANPCAGVKGHKEVGRDHYIEDEMFALVYS 185 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246 R A + +G R +D+ + + ++ ++ KT +E+ ++ Sbjct: 186 HAEQPLRDALDLFYLTGQRIADTLKMDERDIREGRLWVQQGKTNAKRRIEITGELKVVID 245 Query: 247 MTPIGKETFFI-------NNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATI 296 KE I ++ Q M ++ F A AGV K +R + T Sbjct: 246 RIMTRKEGHRIRTSRLIVMDNGQPMTSSMLRGRFDAAREAAGVEKGEFQMRDLRAKAGTD 305 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKG 325 A++ + G TV E Y + Sbjct: 306 KAESSGDILQARDQLGHTTVVMTENYIRK 334 >gi|293368859|ref|ZP_06615463.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|292636164|gb|EFF54652.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] Length = 397 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 61/357 (17%), Positives = 111/357 (31%), Gaps = 34/357 (9%) Query: 18 HGKIIY-----YFRKGHGRRIRLPYPHESTFIPAYM--SALTGSTPKREYINSPRKKPTT 70 GK Y Y R + A + + N+ + K Sbjct: 45 GGKRQYEFLKLYLIPEKTREDKAKNETTLALAKAIQSKRIVELQNDAHGFQNTNKSKANV 104 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIRSGVESRKHT 129 + +L++ +S GSL N + + ++ GD +R I + + V+ K Sbjct: 105 IDYLVNMRNQSKERGSL--NYEKTIGNTIRELKLFRGDYIAFRDIDKDFLSNFVDFLKQA 162 Query: 130 PSSAIQ----------------FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT---EG 170 ++ + +R A ++ + INP + Sbjct: 163 KKASKYGLAKAGGVLSNNSVVAYYGVLRTALNKAFKEGIITINPTKEFNFADKVKAEASR 222 Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKT 229 T E+++ + + + AF F GLR SD + LQ + I+ K Sbjct: 223 REYLTIEELKLLIATECKYEIMKQAFLFSCLCGLRVSDIRKLKWSDLQKSGERIRIEIKM 282 Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287 + L P E + + + + A AGV K S H Sbjct: 283 QKTKEPLYLPISDEALKWLPQRGEAKDDDFIFPLTHEGTINNILQKWAKAAGVTKHISFH 342 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 R AT+ GA + + G K + + Y K D+ + + I ++ D Sbjct: 343 VARHTHATMMLTLGADLYTVSKLLGHKNIATTQIYAKIVDKKK--EEAISLIPNLTD 397 >gi|225023328|ref|ZP_03712520.1| hypothetical protein EIKCOROL_00181 [Eikenella corrodens ATCC 23834] gi|224943973|gb|EEG25182.1| hypothetical protein EIKCOROL_00181 [Eikenella corrodens ATCC 23834] Length = 355 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 54/336 (16%), Positives = 112/336 (33%), Gaps = 22/336 (6%) Query: 5 LRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64 LP + +++T GK+ +Y+ R LP S F A + + + Sbjct: 6 RNLPMRMRQKKTSSGKVYFYYDTCAKPRKWLPL--GSDFFEALRKYADYEQEYSQELTAR 63 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GD--FDYRKITTKHIRS 121 ++ T + + Y ++ +L+ ++ + + GD +I + I Sbjct: 64 IEREATFRVVAERYVRTV-LPTLSPRTQSDYLYQLKFLYEYFDGDNPAPINQILSVDIYE 122 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 +E R+ A + + V+F WA + Y ++T T D Q Sbjct: 123 YLEWRQAAKIRANREIALFSVIFNWARKWGYTNNENPCRGVNKYQETGRHVYIT--DEQY 180 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 ++ + +L + G R +D + +++ I+ K T + ++L Sbjct: 181 WRLYECAERHLQLLMLVAYFIGQRVADCLKIRTTDIKDGELWIEQNKVQTKVRIKLTGEL 240 Query: 242 MKLLA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHG 288 ++L + + Q M KAG+ K+ Sbjct: 241 AEVLDLILRERGEQKHDYLFVSLGRQRHRGQPMTYAMLRGAMDRAREKAGIEKAAFQFRD 300 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R +AT + DA G T + + Y + Sbjct: 301 LRAKAATDTDDA-VGIEAARVLLGHTTQNMTKRYIR 335 >gi|297748477|gb|ADI51023.1| hypothetical protein CTDEC_0347 [Chlamydia trachomatis D-EC] gi|297749357|gb|ADI52035.1| hypothetical protein CTDLC_0347 [Chlamydia trachomatis D-LC] Length = 317 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 96/302 (31%), Gaps = 43/302 (14%) Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD------------------ 110 T+ + Y K+ SL ++ ++ + Sbjct: 5 TSFYAFLD-YLKNMKASSL--HTLRNYCMDLSSLKCFLEKKSDLSPTPPLSLHDNTYDYP 61 Query: 111 ---YRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164 + T +IR + + H+ + + L++++ ++ V+ + + NP + P Sbjct: 62 PLSFSLFTKDNIRLYLLEQIQTHHSKRTVRRRLSAIKSFARFCVKNQLIPENPAEMIRGP 121 Query: 165 KRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220 + E P T E + + G + R E SGLR S+ + Sbjct: 122 RLPQELPSPLTYEQVLALMAAPELDKVTGFRDRCLLELFYSSGLRISEITALNRADIDFQ 181 Query: 221 IFS-IKTQKTGTIITVELPDGFMKLLAMTPIG---------KETFFINNDKQKMNATQFS 270 K V + ++ L + F+N ++++ Sbjct: 182 SHLLHIRGKGKKERIVPMTKVAVQWLQDYLNHPDRASVEQDHQACFLNRFGKRLSTRSID 241 Query: 271 IWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 F+ K G++ + H +R AT + G + G +++ YT + + Sbjct: 242 RKFQQYLLKTGLSGSITPHTIRHTIATHWLERGMDLKTIQLLLGHTSLETTTIYTHVSMK 301 Query: 329 IR 330 ++ Sbjct: 302 LK 303 >gi|78045014|ref|YP_360522.1| prophage LambdaCh01, site-specific recombinase phage integrase family protein protein [Carboxydothermus hydrogenoformans Z-2901] gi|77997129|gb|ABB16028.1| prophage LambdaCh01, site-specific recombinase, phage integrase family [Carboxydothermus hydrogenoformans Z-2901] Length = 371 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 45/368 (12%), Positives = 117/368 (31%), Gaps = 47/368 (12%) Query: 17 RHGKIIYYF------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 + G G + + ++ + +I + T Sbjct: 7 KRGNYYSVVLYLGKDENGKKKYKWIGGFKTKKEAEKVLAEMINKVETNNFIFPEK---IT 63 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH- 128 LK ++ + ++ +L+ + +E+ + II + + +K+ I+ S++ Sbjct: 64 LKEFLNYWLENYVRPNLSPTTAYGYEAIINLHIIPFFKNIELQKVRPIDIQQYYNSKRDE 123 Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + + +Q + F +A++ + + NP V+ PK K + ++++ + Sbjct: 124 LSGKTLLQHHRILHKAFDFAMKLQLIPNNPIDFVDSPKAKKYKAKILDLKEIKTLLNA-L 182 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII-------------- 233 + + + L GLR + + + +I+ ++ Sbjct: 183 KDTDLEVPINLALSLGLRRGELLALKWEDVNWEEGTIQIRRNLVRAGTKLILKEPKSETS 242 Query: 234 ----------------TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277 + +L N+ + +N + FS F Sbjct: 243 IRTLKLSKTLLTMLKNHRKKQIELKLMLGNEYKDTGFICCKNNGEMINPSTFSHQFSDFL 302 Query: 278 TKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGIKN 335 K G+ H +R +AT+ + A + G TV + Y+ + + Sbjct: 303 KKHGLPDIRLHDLRHTNATLMLKSNIPAKIASSRLGHSTVAITLDLYSHVLTD--MDEEV 360 Query: 336 SRRISSVV 343 + +I ++ Sbjct: 361 ANKIDDII 368 >gi|55981508|ref|YP_144805.1| putative phage integrase/recombinase [Thermus thermophilus HB8] gi|55772921|dbj|BAD71362.1| putative phage integrase/recombinase [Thermus thermophilus HB8] Length = 293 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 37/273 (13%), Positives = 86/273 (31%), Gaps = 12/273 (4%) Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR- 126 T+ + L+ N+ + +++ GD ++T +R+ + Sbjct: 2 RGTITDWAEAWLLDCRARGLSPNTIGYYRDAVKAMVKVVGDKPMAELTADDLRAFLVKSF 61 Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYV---AINPCLSVERPKRKTEGIRPWTKEDMQQ 181 +P + R +WAV++ + + P+ +R W + + Sbjct: 62 EDGLSPGGVAARWRAARAFVRWAVKEGALGVDPTGKIRPPKVPEADLPVVREWEVKKLLA 121 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 + + L +GLR S+ V ++ ++ + + Sbjct: 122 AAEMGKNPLRDKALVMVLWDTGLRASEVLGLRVSDVKAEAVRVRRKGGAVQWVPVSLPTY 181 Query: 242 MKLLAMTPIGKETFFINNDKQKMN-----ATQFSIWFKAKATKAGVN-KSAHGVRKFSAT 295 +LA + + + + + A AG+ K H R+ +A Sbjct: 182 RAILAYARAERPPSDHDALFLTRSGLPLAYDGLKMVLRRLAEYAGLPPKPPHAFRRGAAV 241 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADR 328 G ++ L A G K+ Y + A++ Sbjct: 242 AMVKNGMPSYALQAMLGHKSPVMTAHYVRLAEK 274 >gi|317504561|ref|ZP_07962535.1| integrase [Prevotella salivae DSM 15606] gi|315664332|gb|EFV04025.1| integrase [Prevotella salivae DSM 15606] Length = 407 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 48/362 (13%), Positives = 96/362 (26%), Gaps = 28/362 (7%) Query: 1 MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60 M ++ + R + +Y K R + + Sbjct: 54 MAGKPKV--HIKHNRRKENLQLYLIAKPRTPVERQQNKETLELAAKIHAEREQQFKESML 111 Query: 61 -INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--------FDY 111 + + Y S L + ++ + Sbjct: 112 GYRLKKDRNVNFLDYYQAYIDSYTKKDL-----RMVKIALNRFKDFLKEQYPLYEFSIKP 166 Query: 112 RKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169 IT + VE + A + + ++A+ E + +PC V Sbjct: 167 DLITKDMMEHFVEYLQSRSVGEGAKSIYQRFKKVVRYAIDHEVMQKDPCKGVVCKVDDQV 226 Query: 170 GIRP---WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226 + + + +E R AF LY GLR D +++ +K Sbjct: 227 LRKDVLSMDEIQALIQCHYENENPNVRRAFILCLYCGLRFCDVKDLTYKNVDYTNHLLKF 286 Query: 227 QKTG---TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 ++ + + L ++ + S K +AG+N Sbjct: 287 EQNKTKGHSAHSGVIIPLNEGLLSLIGEAPEDLSSSIFNLPSYESCSKSVKRWVKRAGIN 346 Query: 284 K--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 K S H R A + GA + + G + E YT+ D +L + + Sbjct: 347 KHISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVD--KLKEDAINSLPA 404 Query: 342 VV 343 + Sbjct: 405 LK 406 >gi|56552810|ref|YP_163649.1| site-specific tyrosine recombinase XerC [Zymomonas mobilis subsp. mobilis ZM4] gi|56544384|gb|AAV90538.1| integrase family protein [Zymomonas mobilis subsp. mobilis ZM4] Length = 307 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 41/280 (14%), Positives = 88/280 (31%), Gaps = 23/280 (8%) Query: 74 LISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITT--------KHIRSGVE 124 L +++ + + + +S ++ + + I G+ I IR+ + Sbjct: 16 LATQWEQYLQFSLRRSPHSIRAYMATVHRFISFLGNHRGDLIDKNTLQKTDIAEIRAFLA 75 Query: 125 SRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQ 180 R+ + SS + ++ +R ++ AI + P+ + ++ Sbjct: 76 YRRQSGLANSSVAREISGIRAFLRFIGLDPIPAIKGARVKKGIPRPLSPEDAVALAKEAS 135 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 + S ++ L SGLR S++ + L K I V L + Sbjct: 136 EEASEQWIEARDLALLLLLYGSGLRISEALNLTCEILPLQTTLRVVGKRSKIRIVPLLEK 195 Query: 241 FMKLLAMTPIGKETFFINNDKQKM-------NATQFSIWFKAKATKAGVN--KSAHGVRK 291 + + F + +A + G++ + H +R Sbjct: 196 VKRAMETYVRLCPYAFSGSQPFFRGAKGGVLSADVLRRTVRKARYHLGLDNKATPHALRH 255 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 A+ GA L G ++ + YT D RL Sbjct: 256 SFASHLLGRGADLRSLQELLGHASLSSTQIYT-AVDAARL 294 >gi|62290876|ref|YP_222669.1| site-specific tyrosine recombinase XerD [Brucella abortus bv. 1 str. 9-941] gi|82700788|ref|YP_415362.1| site-specific tyrosine recombinase XerD [Brucella melitensis biovar Abortus 2308] gi|189025091|ref|YP_001935859.1| Phage integrase [Brucella abortus S19] gi|254690165|ref|ZP_05153419.1| site-specific tyrosine recombinase XerD [Brucella abortus bv. 6 str. 870] gi|254694656|ref|ZP_05156484.1| site-specific tyrosine recombinase XerD [Brucella abortus bv. 3 str. Tulya] gi|254731198|ref|ZP_05189776.1| site-specific tyrosine recombinase XerD [Brucella abortus bv. 4 str. 292] gi|256258419|ref|ZP_05463955.1| site-specific tyrosine recombinase XerD [Brucella abortus bv. 9 str. C68] gi|261214980|ref|ZP_05929261.1| integrase/recombinase xerD [Brucella abortus bv. 3 str. Tulya] gi|62197008|gb|AAX75308.1| XerD, integrase/recombinase [Brucella abortus bv. 1 str. 9-941] gi|82616889|emb|CAJ11988.1| Phage integrase:Phage integrase, N-terminal SAM-like [Brucella melitensis biovar Abortus 2308] gi|189020663|gb|ACD73385.1| Phage integrase [Brucella abortus S19] gi|260916587|gb|EEX83448.1| integrase/recombinase xerD [Brucella abortus bv. 3 str. Tulya] Length = 307 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 37/289 (12%), Positives = 82/289 (28%), Gaps = 33/289 (11%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR---K 127 I + + A N+ S+ + + + + T HIR +++ Sbjct: 6 AIENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKGVNLAEAETGHIRMTLDTMAAQG 65 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185 P+S + L+++R F++ + + +P + PK++ + + E++ + Sbjct: 66 FAPTSQARRLSALRQFFRFLYSEGFRQDDPTGILYAPKKQKPLPKIMSVENVGKLLDRAA 125 Query: 186 -----------WSEGSQPRLAFEFLLYSGLRCSDSC-------RAGVQHLQNNIFSIKTQ 227 + + E L +GLR S+ R + L K + Sbjct: 126 LEANEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKGSKDR 185 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-- 285 L + G + + F + Sbjct: 186 MVPLSRKARDALQKFLTLRDSLPGSDDNPWLFPAFSESGHLARQVFARELKGLAARAGLA 245 Query: 286 -----AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 H +R A+ GA + G + + YT + Sbjct: 246 ASSASPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEER 294 >gi|327183903|gb|AEA32350.1| phage integrase family protein [Lactobacillus amylovorus GRL 1118] Length = 322 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 39/291 (13%), Positives = 98/291 (33%), Gaps = 14/291 (4%) Query: 45 PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR 104 A + L K + P KK + + ++++ ++ + + ++ +Q++R Sbjct: 18 AAQLKRLQEVLLKHLVKDEPEKKKISNQEYLTKFLEAKKIEGCSERTIKYYKVTVEQLLR 77 Query: 105 KSGDFDYRKITTKHIRSGVESRK----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 K D RK+TT+ +R + + ++ ++ F W ++Y+ +P Sbjct: 78 KVLD-PIRKVTTEQMREYLVDYQKINNCGKTTIDNVRRNISSFFSWLEEEDYILKSPMRR 136 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220 + + + + T ED+++ + + + L +G+R + R + + Sbjct: 137 IHKIRAEKLVKNVITDEDIER-LRDGCDCLRDVAMIDLLYSTGIRVGELVRLNRSDINFS 195 Query: 221 IFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFI------NNDKQKMNATQFSIWF 273 V L + + ++ + I Sbjct: 196 ERECVVFGKGDKERRVYFDAKSKIHLINYLKSRTDANPALFVSLDRPYSRLKISGVEIRL 255 Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + K +++ H R+ AT + D G ++ G +D Y Sbjct: 256 RQLGRKLNLDRVHPHKFRRSMATRAIDKGMPIEQVQKILGHSQIDTTMQYA 306 >gi|300313582|ref|YP_003777674.1| site-specific integrase/recombinase [Herbaspirillum seropedicae SmR1] gi|300076367|gb|ADJ65766.1| site-specific integrase/recombinase protein [Herbaspirillum seropedicae SmR1] Length = 330 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 50/304 (16%), Positives = 87/304 (28%), Gaps = 46/304 (15%) Query: 74 LISEYRKSAH-WGSLAVNSRISFESYFDQII-------RKSGDFDYRKITTKHIRSGVES 125 LI +Y L+ ++ + ++ + D D RK T IR Sbjct: 12 LIGQYLSFLRTQRKLSDHTVEHYGRDLQELRSLLAPAGEEHADIDLRKTTQVQIRKCAAR 71 Query: 126 RKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR--------PW 174 S + L++ R F W Q +A NP V+ PK+ + Sbjct: 72 LHARGLNARSIARKLSAWRGFFGWLSMQMDLAANPVDGVKAPKKSKPLPKALAADDAIRL 131 Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----- 229 + + + R FE L SGLR S+ V ++ + Sbjct: 132 VSQPDPVRDPDSTLAACNRAMFELLYSSGLRVSELVGIDVADVREGGYESAGWVDLEEAE 191 Query: 230 -------GTIITVELPDGFMKLLAMT------------PIGKETFFINNDKQKMNATQFS 270 G V + LA F+N +++ Sbjct: 192 VTVTGKGGKKRKVPVGQAARAALADWLPLRARLRKADGGPDSHALFLNERGARISPRVAQ 251 Query: 271 IWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 + KA + + H +R A+ + + G ++ + YT D Sbjct: 252 LRLKAHGRALEMASDVHPHMLRHSFASHVLQSSGDLRAVQEMLGHASITATQVYT-ALDF 310 Query: 329 IRLG 332 RL Sbjct: 311 QRLA 314 >gi|320352532|ref|YP_004193871.1| integrase family protein [Desulfobulbus propionicus DSM 2032] gi|320121034|gb|ADW16580.1| integrase family protein [Desulfobulbus propionicus DSM 2032] Length = 357 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 47/335 (14%), Positives = 94/335 (28%), Gaps = 23/335 (6%) Query: 26 RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85 R +G+R R +F+ + L S + I + L +EY + A Sbjct: 19 RIVNGKRQR------KSFLTKKEALLWESEQLPDEIAEQKTHSVCLLDWATEYLRHAE-Q 71 Query: 86 SLAVNSRISFESYFDQIIRKSGDFD---YRKITTKHIRS--GVESRKHTPSSAIQFLTSM 140 + + F Q SG ++T ++ +S + ++A + ++ Sbjct: 72 NFTGKTFDEKRMAFRQFFAYSGINPKESANRLTALQVQKALQRQSISRSGNAANKDRKNL 131 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200 + W V+ + S R D Q +L L Sbjct: 132 SAAWSWGVKFLQLPSENPFSKVEKFASERFERYVPTLDDFWKVFHSLVQDQDKLMLYCYL 191 Query: 201 YSGLRCSDSCRAGVQHLQNNI------FSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254 +G R + R + + + + D + L G Sbjct: 192 QTGARRDELFRLTWADVDFFRKRIRLSWRKNKVGEWRSQWLSIKDDLAEWLLRHKKGNSD 251 Query: 255 FFINNDKQKMN--ATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATY 311 + + W K +AGV HG+R A+I A E+ Sbjct: 252 LKEHVFVSYRSLAYQYRQHWLKKVCKEAGVKPFGFHGIRHLFASILAAQNVPLVEIQYML 311 Query: 312 GWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346 ++ + Y + + + + S+ Sbjct: 312 RHTSLATTQRYIHRL--KKENREVLAALPGLTASE 344 >gi|66395462|ref|YP_239821.1| ORF012 [Staphylococcus phage 2638A] gi|62635889|gb|AAX91000.1| ORF012 [Staphylococcus phage 2638A] Length = 345 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 39/327 (11%), Positives = 102/327 (31%), Gaps = 20/327 (6%) Query: 19 GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78 GK Y K G+R R + + L R+ N T + + Sbjct: 8 GKKWQYEFKHEGKRYRKKGFRTKREANS--AGLDKLNELRQGFNFE--NNLTFEDYFKNW 63 Query: 79 RKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVESRKHTPS--SAIQ 135 ++ ++ N+ + I R G + KI + + + + + + Sbjct: 64 IETYKENIVSENTFRHYRFTLKHIQRHKIGKVEISKINKQMYQKFINDFSENRAKETIRK 123 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQ 191 +++ + AV +A NP + KT ++++ + + S+ Sbjct: 124 TNGAIKSALEDAVYDGLIAKNPTYKITFKAGKTTKSEEEKYISLEEYKALKEYLKDKSSK 183 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-------FSIKTQKTGTIITVELPDGFMKL 244 LA ++ +G R S ++++ + + + + Sbjct: 184 SALALYIMICTGCRVSGVRSMKLEYINEFRSELYIDEHKTDSSPRYVAVGKNDLRHIINV 243 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGAT 303 + + I + + + + ++ + K G+N ++H +R + + Sbjct: 244 IKNSTISYDGYIFKDSGKLISINAINKTLKKACESLGINYITSHALRHTHCSYLLAKDIS 303 Query: 304 AHELMATYGWKTVD-QAETYTKGADRI 329 + + G K + Y+ + Sbjct: 304 IYYISKRLGHKNISITTSIYSHLLEEK 330 >gi|313681427|ref|YP_004059165.1| integrase family protein [Sulfuricurvum kujiense DSM 16994] gi|313154287|gb|ADR32965.1| integrase family protein [Sulfuricurvum kujiense DSM 16994] Length = 282 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 41/266 (15%), Positives = 85/266 (31%), Gaps = 16/266 (6%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK----ITTKHIRSGVESRK 127 K +Y + + + S+ D+++ + D I +R + S K Sbjct: 10 KEAFLKYLDTI--RGYSPLTIRSYNDAIDEML-TFAEMDASSNLLSINLMPLRLKISSLK 66 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +A L+++R K+ + E K +P T E + + Sbjct: 67 AKSIAAK--LSAIRSFVKYL--RSQGKTVELRGDESIKTPKTLPKPITHEQILHALQY-- 120 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247 Q LA L GLR S+ + + K + + D ++ Sbjct: 121 AEPQAALAITLLYTMGLRISELTHLRLSDISEGWSR-IHGKGSKERDIPMMDNIRTMVQE 179 Query: 248 TPIGKETFFINN--DKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAH 305 + +K++ K G+ + H +R AT + GA Sbjct: 180 YQKINPSREYVFELKGEKLSENSLRYTIIKAFAKVGLKVTPHQLRHTYATELLNNGARIA 239 Query: 306 ELMATYGWKTVDQAETYTKGADRIRL 331 ++ G ++ + YTK + +++ Sbjct: 240 DVSELLGHASMATTQIYTKLGNALKM 265 >gi|168184229|ref|ZP_02618893.1| CAAX amino terminal protease family protein [Clostridium botulinum Bf] gi|182672699|gb|EDT84660.1| CAAX amino terminal protease family protein [Clostridium botulinum Bf] Length = 355 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 46/360 (12%), Positives = 108/360 (30%), Gaps = 37/360 (10%) Query: 11 VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN----SPRK 66 + +++ + Y G + + +A+ S + E P Sbjct: 6 LIRKKDKG--YQYIITYKVGNKWKTKSKQGFKKRQDAQTAMDKSLAELEKYIKNNIDPSM 63 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 T K Y + N+ ++F++ + + + KI+ I+ V++ Sbjct: 64 SEITFKQFTDMYLEHMKIYRTT-NTILAFKTVLNHF-TLLSNKELDKISNIDIQRIVDNL 121 Query: 127 KHT---PSSAIQFLTSMRVLFKWAVRQEYVAIN-PCLSVERPKRKTEGIRPWTKEDMQQF 182 T PS+ +++ + +FK A+ + P +++ K K + + E+ + Sbjct: 122 TLTGLNPSTIQEYIRKLNTIFKSAMDDYNIIDKLPTKNLKFNKSKQQVNKRALNENEENK 181 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------- 232 + ++ L L GLR + + +I K Sbjct: 182 LLEDFKSNKYYLVILLGLKCGLRLGEILGLTWSDIDEVNKTISINKQWKQVNPTKYNFGE 241 Query: 233 -------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285 T+ + + L + N++ G N + Sbjct: 242 LKSKNSNRTIPISQSTLDELKKYKKIVNIDNRLFKFKNTNSSCI--CLNRLLKLKGYNIT 299 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345 H +R AT G + G +TY+ D ++ + ++++ Sbjct: 300 VHELRHTYATKLISNGVDFKTVAQLLGHTVEQTMKTYSHVND------DMMKKATKIIEN 353 >gi|66046081|ref|YP_235922.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas syringae pv. syringae B728a] gi|63256788|gb|AAY37884.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas syringae pv. syringae B728a] Length = 344 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 53/329 (16%), Positives = 108/329 (32%), Gaps = 20/329 (6%) Query: 10 FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 + K + R G + YY+ G R +P + + L K ++ ++ Sbjct: 13 RLRKRKQRSGVVYYYYDIGGSPRKEIPLGSDYGMAIVEYAKL----EKSRTSSALVQQVL 68 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRK 127 T ++ +Y + ++ Q+++ D I +H+ + R Sbjct: 69 TFAYVAEKYMIEVVPTK-SPATQKDNARELKQLLKFFDDPPAPLEAIEPQHVVQYLRQRG 127 Query: 128 HT-PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 T P A + + ++ +A+ K E R ED + Sbjct: 128 KTAPVRANREKALLSAIWNFAM--SAGYTALANPCAGVKGHKEVGRDHYIEDEMFALVYS 185 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246 R A + +G R +D+ + + +++ ++ KT +E+ ++ Sbjct: 186 HAEQPLRDALDLFYLTGQRIADTLKMDERDIRDGRLWVQQGKTNAKRRIEITGELKVVID 245 Query: 247 MTPIGKETFFI-------NNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATI 296 KE I ++ Q M ++ F A AGV K +R + T Sbjct: 246 RIMTRKEGHRIRTSRLIVMDNGQPMTSSMLRERFDAAREAAGVEKGEFQMRDLRAKAGTD 305 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKG 325 A++ + G TV E Y + Sbjct: 306 KAESSGDILQARDQLGHTTVVMTENYIRK 334 >gi|94311976|ref|YP_585186.1| phage integrase [Cupriavidus metallidurans CH34] gi|160898186|ref|YP_001563768.1| integrase family protein [Delftia acidovorans SPH-1] gi|93355828|gb|ABF09917.1| tyrosine-based site-specific recombinase [Cupriavidus metallidurans CH34] gi|160363770|gb|ABX35383.1| integrase family protein [Delftia acidovorans SPH-1] Length = 415 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 54/368 (14%), Positives = 108/368 (29%), Gaps = 26/368 (7%) Query: 7 LPPFVTKERTRHGKI----IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62 L P + T G+ Y G R+ L E T A A R + Sbjct: 43 LVPGFLCKVTPAGRKVFMLQYRTNAGERRKPALGLYGELTVEQARSLAQEWLAEVRRGGD 102 Query: 63 SPRKKPT-----TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITT 116 K T+K L +++ + +++ +++ D+ I+ G + + Sbjct: 103 PSAAKAAARSAPTVKELCTKFMEDYSKQRNKPSTQRGYQAVIDRCIVPMLGRLKVQDVKR 162 Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + + ++ H P+ A + + MR +F A + P Sbjct: 163 PDVATAMKKMAHKPAEANRAFSVMRKMFNLAEVWGHRPDGTNPCRHVPMYPNGKATHLIS 222 Query: 177 EDMQQFKSFWSEGSQPR--------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228 ++ E + LA R S+ + + + Sbjct: 223 DEDMGKLFRRLEHIEAEGLENYVIPLAIRLQFEFAGRRSEIVTLRWDWVDLDNRRVVWPD 282 Query: 229 TGTIITVELPDGFMKLL-----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG-V 282 + T + L ++ + + ++ + AG Sbjct: 283 SKTGGMSKPMSEEAYRLLSTAPRQEGTPYVLPSPSHPGKHLTTGEYYGGWSRALKAAGAT 342 Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR--IRLGIKNSRRIS 340 + HG+R SAT A++G MA KTV Y D + + R Sbjct: 343 HVGTHGIRHRSATDIANSGIPVKVGMALTAHKTVAMFMRYVHTEDDPVRKAAELVANRRK 402 Query: 341 SVVDSDDP 348 ++ ++ P Sbjct: 403 TITEAQRP 410 >gi|28867763|ref|NP_790382.1| site-specific recombinase, phage integrase family [Pseudomonas syringae pv. tomato str. DC3000] gi|28850998|gb|AAO54077.1| site-specific recombinase, phage integrase family [Pseudomonas syringae pv. tomato str. DC3000] Length = 413 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 48/351 (13%), Positives = 100/351 (28%), Gaps = 30/351 (8%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 +T G RK + + + YI + TL+ Sbjct: 53 KTPSGTWKALIRKTGWPTV-AKTFRTKRDAEDWSRRTEDEMVRGVYIQRSGSERMTLEAA 111 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS--- 131 + Y ++ S ++I G + ++ I + R + PS Sbjct: 112 LKRYLSDITPTK-KPTTQRGETSKAKKLIEHLGKYSLAALSADIIAGYRDKRLNEPSRGG 170 Query: 132 -----SAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + L + L+ A+++ + NP L++ +P R + E+ + + Sbjct: 171 TISNNTVRLELALLSHLYTVAIQEWGLGLTFNPVLNIRKPSPGDGRDRRLSPEEERLLLA 230 Query: 185 FWSEGSQPRLAFEFL--LYSGLRCSDSCRAGVQHLQ----------NNIFSIKTQKTGTI 232 + S P L + L +G+R S+ + +T Sbjct: 231 AVNRHSNPMLGWIVCIALETGMRSSEISSLRRPQVDLAKRVIRLSDTKNDGSRTVPLSKR 290 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRK 291 T + F K F+ + K + H +R Sbjct: 291 ATEVFKAAMDNPVRPIDCNLVFFGEPGKDGKRRPYTFTKIWGQLKKKLDLPDFRFHDLRH 350 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342 + + + G + E+ A G K++ + YT R+ + Sbjct: 351 EAVSRLVEGGLSDQEVSAISGHKSMQMLKRYTHL-----RAEDLVARLDRI 396 >gi|220931210|ref|YP_002508118.1| phage integrase family protein [Halothermothrix orenii H 168] gi|219992520|gb|ACL69123.1| phage integrase family protein [Halothermothrix orenii H 168] Length = 391 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 39/361 (10%), Positives = 104/361 (28%), Gaps = 51/361 (14%) Query: 26 RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85 + G +R + +T K L + + + Sbjct: 29 QTGKQKRKYFYGKTKKEVAKK----MTELKMKLFNGTYSEPSEMKLIDWLHRWIEGRK-S 83 Query: 86 SLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR----------KHTPSSAI 134 +LA ++ +++ + + G+ + + + ++ + + +P + Sbjct: 84 TLAYSTYRNYKVMINNHLADDIGETKLKDLKARQVQELLNDKLEKGKVYGEGGLSPRTVK 143 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194 +++ + AV++ + N C +VE PK++ E + + + + Sbjct: 144 YIYSTLHTALEQAVKENMIPRNICKAVEVPKKQEEKKLHTWNKKQVNIFLKAARDYKYFI 203 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------------------- 232 L +G+R + + + I+ ++ Sbjct: 204 LHYLALNTGMRRGELLGLQWKDIDMEKKRIEVKRQLARTDEGLIFKKVKTKSGNRTIPIT 263 Query: 233 --------ITVELPDGFMKLLAMTPIGKET-FFINNDKQKMNATQFSIWFKAKATKAGVN 283 L K N ++ FK + G+ Sbjct: 264 DNVVRELKRHQIKQGEKRLALGEAYNKKADLVASNGIGNPIDPRNLVRDFKDIIEETGLP 323 Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISS 341 H +R AT+ +A L G ++ +TY+ + + I+ R++ + Sbjct: 324 EIRYHDLRHTFATLFLEAKGPIKTLQQILGHSSITVTIDTYSHVTEE--MLIEAERKMET 381 Query: 342 V 342 + Sbjct: 382 M 382 >gi|313885888|ref|ZP_07819628.1| site-specific recombinase, phage integrase family [Porphyromonas asaccharolytica PR426713P-I] gi|312924643|gb|EFR35412.1| site-specific recombinase, phage integrase family [Porphyromonas asaccharolytica PR426713P-I] Length = 414 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 33/313 (10%), Positives = 85/313 (27%), Gaps = 28/313 (8%) Query: 54 STPKREYINSPRKKPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKSG--- 107 + ++ T L +Y + + +E Sbjct: 92 LERIKSEYLGKKEDVETFMTLFEKYNNDVRQQVGYTKTPATLQKYEVCRKHFQAFLKTKY 151 Query: 108 ---DFDYRKITTKHIRSGVESRKHTP----SSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 D ++T I + ++A + L +++ + + + +P + Sbjct: 152 RRSDLKIAELTVLVIHDFELYLRTAAKQKQNTANKTLKTLKTIVLFGKSIGVINHDPFRN 211 Query: 161 VER---PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217 + P + + + S R F F ++GL D +H+ Sbjct: 212 HQFTSTPVDRGFLSEEEVMDIATKDLSDIPRLELVRDIFVFSCFTGLAYIDVANLKSEHI 271 Query: 218 QNNIFSIKTQKTGTIITVELPDGFMKLLAMTP-----IGKETFFINNDKQKMNATQFSIW 272 + + LL + +T + ++ + + + Sbjct: 272 VTLDGKEWIMT---RRQKTKVESNVLLLEVPKSIIAKYEGQTAREDMLFPILSNQKMNSY 328 Query: 273 FKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI- 329 K A G+ K + H R AT+ G + G + + Y + ++ Sbjct: 329 LKEIADICGIKKNLTFHLARHTFATLCLSKGVPMESVSKMLGHTNIRTTQIYARITNKKI 388 Query: 330 -RLGIKNSRRISS 341 + + ++ Sbjct: 389 EHDMEQFADKLGK 401 >gi|261218687|ref|ZP_05932968.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261321815|ref|ZP_05961012.1| conserved hypothetical protein [Brucella ceti M644/93/1] gi|260923776|gb|EEX90344.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261294505|gb|EEX98001.1| conserved hypothetical protein [Brucella ceti M644/93/1] Length = 323 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 56/323 (17%), Positives = 110/323 (34%), Gaps = 24/323 (7%) Query: 24 YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83 Y+ G +R P + F+ + A + + + +I+ Y+ S Sbjct: 2 YYAWRGGPALR-GEPGSAEFMASLQEA---------NDSRVIPDASKFRAVITAYKSSHD 51 Query: 84 WGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVESRKHTPSSAIQFLT 138 + LA +++ ++ + D+I +K GD + IR P +A + Sbjct: 52 YQKLADSTKRNWNGWLDRIGKKFGDLSIAQFDLPQKIRPVIRKWRGEFADKPRTADYGMQ 111 Query: 139 SMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197 + + +AV ++ NPC +++ + WT +D+ + K+ + A + Sbjct: 112 VLSRVLSYAVDPLGKISQNPCEGIKQLYKNDRAAIIWTDQDIARLKTKC--SPEVAWAVD 169 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKETF 255 ++GLR D R H+ +N + + + L LL P Sbjct: 170 LAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRHTKEAVIPLYAELRALLQTIPRRSPIV 229 Query: 256 FINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGATAHELMATYG 312 N K F F +A + + H R +AT AG + + G Sbjct: 230 LTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLHFHDFRGTAATKFYIAGLSERVIAEIMG 289 Query: 313 WKTVDQAETYTKGADRIRLGIKN 335 W+ + R I+ Sbjct: 290 WEEETVRNIIRRYVSR-TAAIEA 311 >gi|58697179|ref|ZP_00372594.1| site-specific recombinase, phage integrase family [Wolbachia endosymbiont of Drosophila simulans] gi|58536507|gb|EAL59887.1| site-specific recombinase, phage integrase family [Wolbachia endosymbiont of Drosophila simulans] Length = 278 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 35/255 (13%), Positives = 73/255 (28%), Gaps = 28/255 (10%) Query: 97 SYFDQIIRKS-----GDFD---YRKITTKHIRSGVESRKHTPSSAI---QFLTSMRVLFK 145 +I G+ + + ++ +RS + SR +A + L+ +R FK Sbjct: 2 RDLKDLISFLNTHIGGEVNVGTLKNLSIPELRSWLTSRYARGVNARSNTRALSVIRNFFK 61 Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--------SEGSQPRLAFE 197 + + S+ RP ++ + + +++ + Sbjct: 62 YIKNNHNIDNEAVFSLSRPIQRRTLPKALSIPNIKTLLKEMKLSDLGEPWVVKREIAIIV 121 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI 257 L +GLR S++ V + N T K V + K + Sbjct: 122 LLYGTGLRISEALNLRVSDINNESLI-VTGKGDKQRQVFILPVVKKCIQEYIKACPYLDE 180 Query: 258 NNDKQ------KMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMA 309 K+ T + + + S H R AT + Sbjct: 181 AQHLFVGVRGKKLGRTYVANRLQKIRRMLNLPEILSPHAFRHSFATHLLQEDIDIRSIQQ 240 Query: 310 TYGWKTVDQAETYTK 324 G +++ + YT Sbjct: 241 LLGHSSLETTQIYTH 255 >gi|303245432|ref|ZP_07331716.1| integrase family protein [Desulfovibrio fructosovorans JJ] gi|302493281|gb|EFL53143.1| integrase family protein [Desulfovibrio fructosovorans JJ] Length = 339 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 40/316 (12%), Positives = 89/316 (28%), Gaps = 11/316 (3%) Query: 17 RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSA-LTGSTPKREYINSPRKKPTTLKWLI 75 + G + + R ++ + + K +++++ + TL + Sbjct: 6 KRGNLQWEARIRKRGYPTTCKTFDTKAEAEQWAKGVETEMSKGQFVSTKEAEGYTLGECL 65 Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ 135 Y++ S I + R G I +K I R+ SA Sbjct: 66 DRYKEEYLPRLKNPQSEIYRADRLKK--RALGLRIMATIRSKDIADYRREREKEGVSANT 123 Query: 136 F---LTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 L + LF +A + NP +PK R + + ++ Sbjct: 124 IRLELALLSRLFNFAKSDWGMESLTNPVQLAAKPKLPPGRERRLEQGEEEKLFEAIGNDF 183 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250 + + L + +R + + + + + + T K + + Sbjct: 184 EFSAIIKIALETAMRRGEILKLTWKDVDLRNKA-VFLQDTKNGTCRTVPLSKKAIEVFQG 242 Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAG-ATAHELM 308 S +AG+ + H +R + + + E+ Sbjct: 243 LHRHISGKVFPSCTVPQSLSKKMAKACQRAGLADLRFHDLRHEATSRFFEHTDLDVMEIK 302 Query: 309 ATYGWKTVDQAETYTK 324 A G K++ YT Sbjct: 303 AITGHKSLQMLARYTH 318 >gi|237722683|ref|ZP_04553164.1| mobilizable transposon [Bacteroides sp. 2_2_4] gi|229448493|gb|EEO54284.1| mobilizable transposon [Bacteroides sp. 2_2_4] Length = 386 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 52/375 (13%), Positives = 110/375 (29%), Gaps = 45/375 (12%) Query: 1 MTPSL---RLPPFVTKERTRHGKIIYY---FRKGHGRRIRLPY-----PHESTFIPAYMS 49 MT + P + +++ +G + Y +R G ++ L + Sbjct: 1 MTKKTTIQKEPVKLREKKLANGNVSLYLDIYRNGKRQKEYLKLYLIDATTPLEREQNRQT 60 Query: 50 ALTGSTPKREYINSPRKKPTTLKW-------LISEYRKSAHWGSL---AVNSRISFESYF 99 T K + + + + + YRK + + ++ S Sbjct: 61 LATAQAIKSKRLIEMQNGEYSFTRQFKEDTPFLEYYRKMVEERHKNPESDGNWGNWRSCL 120 Query: 100 DQIIRKSGDFD-YRKITTKHIRSGVE---------SRKHTPS---------SAIQFLTS- 139 + + ++ IT + I + ++ P S ++ Sbjct: 121 RYLEIYCDEKTTFKDITPEFINGFKDFLNNVEKDTHKRTGPRRERDVFQGLSQNSKVSYF 180 Query: 140 --MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197 +R A + + +NP +E K T E+++Q + + AF Sbjct: 181 NKLRACINQAYDERIIPVNPLRGIEGFKAAEVKRDYLTLEEVKQLAATPCRYPILKRAFL 240 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI 257 F +GLR SD + +Q + + + Sbjct: 241 FSCLTGLRKSDIQKLTWSEVQKFGDYTRIVFKQKKTGGQEYLDISSQAEKYLGERGNPED 300 Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKT 315 S+ + + A +NK + H R A + D GA + + G K Sbjct: 301 LVFTGFTYGAWTSLELQRWSMAANINKNLTFHCGRHTFAVLMLDLGADIYTVSKLLGHKE 360 Query: 316 VDQAETYTKGADRIR 330 + + Y K D+ + Sbjct: 361 LATTQIYAKVLDKNK 375 >gi|228900732|ref|ZP_04064950.1| Integrase/recombinase [Bacillus thuringiensis IBL 4222] gi|228858916|gb|EEN03358.1| Integrase/recombinase [Bacillus thuringiensis IBL 4222] Length = 305 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 34/282 (12%), Positives = 81/282 (28%), Gaps = 27/282 (9%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHI----RSG 122 L+++I +Y + LA + S+ ++ R + IT I Sbjct: 4 LRFMIKDYLEDKELSGLAPRTIQSYGDTLNEFSRWLVVEKEIINIEDITPPVIKGYLLYC 63 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQ----------EYVAINPCLSVERPKRKTEGIR 172 + R +T + L ++ F++ + + + + + Sbjct: 64 SKERGNTVVTRNGKLQHLKTFFRYLEDEDIIEIRSNPTNKIKPAKTDKTIKVYSDEQIKQ 123 Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KTGT 231 + + + L +G+R + + +I K Sbjct: 124 MLRYYRRMRSRENTLYSYRGHTVIVVLAGTGIRLGELVSMRWDSVDLLNKTITIFGKNRK 183 Query: 232 IITVELPDGFMKLLAMTPIGKETFF--------INNDKQKMNATQFSIWFKAKATKAGVN 283 ++ L D + L + E ++ ++ + + F +++ G Sbjct: 184 SLSTPLTDKVARELYEWRLFCEKYYIKLPAHVFNDHRGNPLTVNAVKLMFTRLSSRMGFK 243 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 +AH R A+ AG + L + E Y Sbjct: 244 TTAHMFRHTYASNCLRAGMDIYTLSKLMHHSQIRTTEVYLHA 285 >gi|225863775|ref|YP_002749153.1| DNA integration/recombination/invertion protein [Bacillus cereus 03BB102] gi|225788569|gb|ACO28786.1| site-specific recombinase, phage integrase family [Bacillus cereus 03BB102] Length = 368 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 53/362 (14%), Positives = 112/362 (30%), Gaps = 43/362 (11%) Query: 17 RHGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + G G+R + + T A + + + TL Sbjct: 7 KRGNKYCIVIDIGPDPETGKRRQKWFSGYKTKKEA-QADVAKKITELNEGTFVEPSKITL 65 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 K + ++ + S+ +S ++S II G K+ HI+ +S ++ Sbjct: 66 KDYLIQWLEIKKM-SVEKSSLSRYQSNINKHIIPNIGMISLHKLNVMHIQKCYQSALNSG 124 Query: 131 SSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + L + AV+Q + NP PK++ I+ WT+E+++QF Sbjct: 125 IANNTILFQHRILTAALNLAVKQNIIPRNPATLAVIPKKEKSSIQTWTEEEVKQFLLHSQ 184 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--------------TGTII 233 E S+ + + + +G+R + Q + N ++ + + Sbjct: 185 E-SRYHIGYLLAITTGMRLGEVLGLRWQDVDFNNHTVTINQTLGHDNKIKTSAKNNSSKR 243 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF--------------SIWFKAKATK 279 T+ +P ++ L + + + + F Sbjct: 244 TIPIPLEVIEELKKCKLQVNKDKLRIGPAYHDLDLIICNKLGEVTTRTTFTRHFDKVIKN 303 Query: 280 AGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA-DRIRLGIKNS 336 AG+ K H R AT+ G + G + Y+ + +K Sbjct: 304 AGIKKIKFHDTRHTHATLLLKQGVHPKVVSERLGHSDISLTLRVYSHVLPNIQEDAVKAF 363 Query: 337 RR 338 + Sbjct: 364 AK 365 >gi|303231738|ref|ZP_07318461.1| site-specific recombinase, phage integrase family [Veillonella atypica ACS-049-V-Sch6] gi|302513687|gb|EFL55706.1| site-specific recombinase, phage integrase family [Veillonella atypica ACS-049-V-Sch6] Length = 396 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 37/326 (11%), Positives = 85/326 (26%), Gaps = 58/326 (17%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG-------- 122 + I E+ + S+ + ++ I + ++ +++ Sbjct: 70 INEWIKEWLTTYVKNSVRPATYKVYKVTLAPIQKAFQGRRLDQLDPTQLQNFFNDQLIHG 129 Query: 123 -VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + +P + A++ NP + PK+ P ++ + Sbjct: 130 GHNQKGLSPYTVRNQRRYFAHCIDTALKLGLTTKNPVRLTKSPKQTKAENHPLSQYEAHN 189 Query: 182 -------FKSFWSEGSQPRLAFEFLLY--------SGLRCSDSCRAGVQHLQNNIFSIKT 226 G RL LY +G+R + + + + Sbjct: 190 LLQQAQDELEAAHSGPIDRLMTTSDLYIGVYIALETGMRLGEIMALRWGDIVLDSYITVQ 249 Query: 227 QKTGT----------------------------IITVELPDGFMKLLAMTPIGKETFFIN 258 + + +LL Sbjct: 250 RSKSEIKEQNITLPKTGVGRKIQISQRLVNALTQHRAIQSNYKKELLGYYQDDHHIIGGL 309 Query: 259 NDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTV 316 S FK + +AG+++ H +R AT+ AG + G ++ Sbjct: 310 QGNGYHARHYSSRLFKKLSQRAGIHRRVRFHDLRHTHATLLLLAGVNPKIVQERLGHASI 369 Query: 317 DQA-ETYTKG--ADRIRLGIKNSRRI 339 + + Y+ AD+ + I R+ Sbjct: 370 NVTLDIYSHVALADQA-VAINALDRL 394 >gi|296171500|ref|ZP_06852764.1| integrase/recombinase XerD [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894062|gb|EFG73823.1| integrase/recombinase XerD [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 298 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 41/294 (13%), Positives = 94/294 (31%), Gaps = 28/294 (9%) Query: 72 KWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSG---VES 125 + ++ E+ + + ++R ++ ++ D ++ +RS + Sbjct: 2 EAILEEFDEYLALQCGRSAHTRRAYLGDLRSLLTFLADRGAGLDGLSLPLLRSWLSAGAA 61 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 ++ + ++++ WA R+ +A +P ++ PK ++ + Sbjct: 62 AGAARTTLARRTSAVKAFTAWAARRGLLAADPGARLQVPKAHRTLPAVLRQDQALDAMAA 121 Query: 186 WSEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE 236 G + RL E L +G+R S+ C V + ++ K TV Sbjct: 122 AKSGAQQGDPMALRDRLIVEMLYATGIRVSELCGLDVDDVDTGHRLVRVLGKGNKQRTVP 181 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKM---NATQFSIWFKAKATKAG---------VNK 284 L + + A + + T + Sbjct: 182 FGMPAADALRAWLDDGRPALVTAESGPALLLGARGRRLDVRQARTVVHQTVSAVDGAPDM 241 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337 HG+R +AT + GA + G ++ + YT A R+R + + Sbjct: 242 GPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSRLRAVHEQAH 295 >gi|269925988|ref|YP_003322611.1| integrase family protein [Thermobaculum terrenum ATCC BAA-798] gi|269789648|gb|ACZ41789.1| integrase family protein [Thermobaculum terrenum ATCC BAA-798] Length = 316 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 32/274 (11%), Positives = 83/274 (30%), Gaps = 31/274 (11%) Query: 86 SLAVNSRISFESYFDQIIRKSG-----DFDYRKITTKHIRSGVESRKHTPS----SAIQF 136 L+ S +++ ++ + + +++ + +++ Sbjct: 27 GLSPASVRTYQQVLYALVDWLELRLQSKAHVSNLDKQSVKAWQRYLVVEKQLDDDTYVKY 86 Query: 137 LTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQ 191 ++++R + ++ + + + + I+ + +D++ G + Sbjct: 87 ISALRSFVNYLHDEDLTSLTRDDIKLPKSHMDVSSIKALSVDDVRALLMAPDPSTPWGKR 146 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-------KTQKTGTIITVELPDGFMKL 244 R L +G+R ++ C L K V + +L Sbjct: 147 DRALLALLYCTGMRIAELCSLNRDQLPLEHLCEDEILEVSIIGKGRKPRVVFVDAVAQRL 206 Query: 245 LAMTPIGKETFFI--------NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294 L + + ++ + K A KAG+ + H +R A Sbjct: 207 LKEYLQLRTDENPALFVSFKGPTAEDRLTPRAIQMSIKKYAKKAGLKTIPTPHTMRHTFA 266 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADR 328 GA + A G ++ + YT+ DR Sbjct: 267 VHKLQGGADTRIVQAFLGHSSLATTQRYTRVTDR 300 >gi|228975030|ref|ZP_04135589.1| YdcL (Lambda integrase-like, N-terminal,DNA breaking-rejoining enzyme, catalytic core) [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228784551|gb|EEM32571.1| YdcL (Lambda integrase-like, N-terminal,DNA breaking-rejoining enzyme, catalytic core) [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|326942751|gb|AEA18647.1| DNA integration/recombination/inversion protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 353 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 38/344 (11%), Positives = 102/344 (29%), Gaps = 41/344 (11%) Query: 11 VTKERTRHGKIIYYFR----KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 + K+ + G + R G ++++ + + + Sbjct: 3 IYKD-DKRGTYFFVVRVRQFDGTTKQVKRRGFKTKKEAREAEAKM--------LVEKESN 53 Query: 67 KPTTLKWLISEYRK--SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 T + + Y + ++N+ + + ++ ++++ G IT +H+ Sbjct: 54 SNLTFEHVADSYFNWYTQRRKQSSINTIKN--AIYNHLMKEFGKMKIDCITPRHVMDYQN 111 Query: 125 SR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 +++ +F T++ +F + ++ + NP +++++ + + + + Sbjct: 112 KMINEYSAEYLKKFHTTLSAIFNFGIKFHGLTTNPARIAGNFQKESKKRINFWEFEEFKQ 171 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDG 240 + + F L YSG R + + + +I K +T Sbjct: 172 FISVVDEPMYKAFFSTLYYSGARKGELLALTWEDINFEEKTINIHKTKYNRQVTEPKTKA 231 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNA------------------TQFSIWFKAKATKAGV 282 +++ + + A T F A V Sbjct: 232 SNRIIMLPNFVMNLLRGIKKDAALTAPVKNDYVVFGEFYDSLATTSLHKKFNNYLKIAMV 291 Query: 283 N-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 H R A+ + G + + G V TY+ Sbjct: 292 KEIVMHEFRHSHASYLINKGVSPLVVAQRLGHSDVATTLNTYSH 335 >gi|229144736|ref|ZP_04273135.1| Integrase/recombinase [Bacillus cereus BDRD-ST24] gi|228638697|gb|EEK95128.1| Integrase/recombinase [Bacillus cereus BDRD-ST24] Length = 305 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 34/282 (12%), Positives = 81/282 (28%), Gaps = 27/282 (9%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHI----RSG 122 L+++I +Y + LA + S+ ++ R + IT + I Sbjct: 4 LRFMIKDYLEDKELSGLAPRTIQSYGDTLNEFSRWLVAEKEIINIEDITPQVIKGYLLYC 63 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQ----------EYVAINPCLSVERPKRKTEGIR 172 + R +T + L ++ F++ + + + + + Sbjct: 64 SKERGNTVVTRNGKLQHLKTFFRYLEDEDIIEIRSNPTNKIKPAKTDKAIKVYSDEQIKQ 123 Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KTGT 231 + + + L +G+R + + +I K Sbjct: 124 MLRYYRRMRSRENTLYSYRGHTIIVALAGTGIRLGELVSMRWDSVDLLNKTITIFGKNRK 183 Query: 232 IITVELPDGFMKLLAMTPIGKETFF--------INNDKQKMNATQFSIWFKAKATKAGVN 283 ++ L D + L + E ++ ++ + + F + + G Sbjct: 184 SLSTPLTDKVARELYEWRLFCEKYYIKLPAHVFNDHRGNPLTVNAVKLMFTRLSLRMGFK 243 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 +AH R A+ AG + L + E Y Sbjct: 244 TTAHMFRHTYASNCLRAGMDIYTLSKLMHHSQIRTTEVYLHA 285 >gi|164688594|ref|ZP_02212622.1| hypothetical protein CLOBAR_02239 [Clostridium bartlettii DSM 16795] gi|164603007|gb|EDQ96472.1| hypothetical protein CLOBAR_02239 [Clostridium bartlettii DSM 16795] Length = 295 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 38/276 (13%), Positives = 93/276 (33%), Gaps = 21/276 (7%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGV---ESRK 127 ++ EY L+ N+ S+ + + + + + I S + E Sbjct: 3 VLEEYLNYIEKNKKLSKNTVASYNRDLKKYVEYLNERNINLSDVVENDIISYLIELEKED 62 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + +S + ++S++ + + + +P ++++PK K + T++++ + F Sbjct: 63 ISVASISRMISSIKSYHDYLFFNKILDTDPSKNIKKPKVKRVDVEILTEDEVDKLLKFED 122 Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 + + + FE L +G++ ++ ++ + I I + L + Sbjct: 123 LSTPKRIRDKAIFEILYGTGIKVTELIDMNLEDVDLEIDYIYCGSGKNQRVIPLCETTEF 182 Query: 244 LLAMTPIGKETFFINN---------DKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKF 292 L Q+ K A +A +NK+ +R Sbjct: 183 YLLKYINESRNELTYPEEKALFVNAQGQRFTRQGLWKLIKKYAKEADINKNINPTVLRNS 242 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 A + GA + G + + Y K D+ Sbjct: 243 FAIHLLNGGANVAVVNKILGNSNLSSLQLYLKHIDK 278 >gi|119357861|ref|YP_912505.1| phage integrase family protein [Chlorobium phaeobacteroides DSM 266] gi|119355210|gb|ABL66081.1| phage integrase family protein [Chlorobium phaeobacteroides DSM 266] Length = 419 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 39/328 (11%), Positives = 92/328 (28%), Gaps = 21/328 (6%) Query: 32 RIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNS 91 R A + K Y + ++ A Sbjct: 33 RKEHRDVLAEAQDKARQIEKDLVRNPAGVFDRKVKAADDFIEFYRRYAEKDNYPKYA--- 89 Query: 92 RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----KHTPSSAIQFLTSMRVLFKWA 147 + + G + + + + + ++A +LTS++ + + A Sbjct: 90 --NVLPILRRFS--LGVIHFASLNSAWLERFKFYLLSLESISQNTAGGYLTSVKTVLRQA 145 Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCS 207 R+ Y+ + V K+ E ++ S + AF F +SGLR S Sbjct: 146 FREGYLIEDISAKVPGIKKTDIQRHFLPVEQVEALHKAKSNNEMIKQAFLFACFSGLRLS 205 Query: 208 DSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG-------FMKLLAMTPIGKETFFINND 260 D + + + Q ++ + + Sbjct: 206 DVQALYWEQISQINGAPYIQFRQRKTCQYENLPLSEQAATILQEVRALHAEYAPSGSDKV 265 Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 + + + + +AG+ H R AT++ AG + + G + + Sbjct: 266 FILPSRERIAQVLEVWGIRAGLPFKLHFHVSRHTFATMNLTAGCDLYTVSKLLGHREIKT 325 Query: 319 AETYTKGADRIRL-GIKNSRRISSVVDS 345 + Y + D +L ++ + + + Sbjct: 326 TQIYGRIVDSKKLDAVQALPVLQGAIGN 353 >gi|260760651|ref|ZP_05872994.1| integrase/recombinase xerD [Brucella abortus bv. 2 str. 86/8/59] gi|260671083|gb|EEX57904.1| integrase/recombinase xerD [Brucella abortus bv. 2 str. 86/8/59] Length = 309 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 37/289 (12%), Positives = 82/289 (28%), Gaps = 33/289 (11%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR---K 127 I + + A N+ S+ + + + + T HIR +++ Sbjct: 8 AIENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKGVNLAEAETGHIRMTLDTMAAQG 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185 P+S + L+++R F++ + + +P + PK++ + + E++ + Sbjct: 68 FAPTSQARRLSALRQFFRFLYSEGFRQDDPTGILYAPKKQKPLPKIMSVENVGKLLDRAA 127 Query: 186 -----------WSEGSQPRLAFEFLLYSGLRCSDSC-------RAGVQHLQNNIFSIKTQ 227 + + E L +GLR S+ R + L K + Sbjct: 128 LEANEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKGSKDR 187 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-- 285 L + G + + F + Sbjct: 188 MVPLSRKARDALQKFLTLRDSLPGSDDNPWLFPTFSESGHLARQVFARELKGLAARAGLA 247 Query: 286 -----AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 H +R A+ GA + G + + YT + Sbjct: 248 ASSASPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEER 296 >gi|308177312|ref|YP_003916718.1| tyrosine recombinase subunit XerC [Arthrobacter arilaitensis Re117] gi|307744775|emb|CBT75747.1| tyrosine recombinase subunit XerC [Arthrobacter arilaitensis Re117] Length = 334 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 40/313 (12%), Positives = 98/313 (31%), Gaps = 46/313 (14%) Query: 71 LKWLISEYRKSA-HWGSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGVES 125 +++Y + + N+ +++ + +GD ++I+ + +R + Sbjct: 19 FSEPVADYLEYLQRERGRSENTLRAYDVDLRNLGQFLNEHAGDPALKQISVQMLRDWLAY 78 Query: 126 RKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + ++ + +++++ F WA++ V +P L + PK++ + + Sbjct: 79 LHESEVSRTTLARRISAVKNFFAWALKNHLVENDPALRLAAPKKERRLPHILQPSQIDRL 138 Query: 183 K------------------------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218 + + R+ E L SGLR S+ + + Sbjct: 139 LSEHAGLTEENEAARQKGDGTDQDPKARAIQCRDRVIAELLYASGLRISELVALDISDID 198 Query: 219 NNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ----------KMNAT 267 +++ K V +++ + ++N Sbjct: 199 FERRTLRVLGKGNKERMVPFGKPAERVIIEWIRSYRRVVAAEQAEDALLVGVRGSRLNVR 258 Query: 268 QFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK- 324 Q + G H +R AT D GA + G ++ + YT Sbjct: 259 QAREVIASALRSLGDTSASGPHALRHTVATHLLDGGADLRAVQEFLGHASLATTQLYTHV 318 Query: 325 GADRIRLGIKNSR 337 DR+R + + Sbjct: 319 SVDRLRQSYRQAH 331 >gi|326572966|gb|EGE22945.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis CO72] Length = 331 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 36/278 (12%), Positives = 89/278 (32%), Gaps = 31/278 (11%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYR----KITTKHIRSGVESRK 127 + + + ++ ++++ Q G +T + +E K Sbjct: 30 WCDELRLQNYSKHTITTYQTALIQFFNFLESDNYLGGDPLACRRQDLTR-FFSTRLEEEK 88 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI--------RPWTKEDM 179 P SA L+++R+ +++ ++Q +A+NP + + + + Sbjct: 89 IKPISAKLSLSAIRIFYQFLIKQGVIAVNPTTGYKIKSAPRKLPTVADELLIKQLLDQKT 148 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----------QKT 229 + + + + FE + SGLR S+ + + +I ++ Sbjct: 149 PEDTAKAYLWIRDKAMFELMYSSGLRLSELAGLNMGDVNFDIGIVRVLGKGNKTRQVPVG 208 Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AH 287 + + L K F +++ + K AT AG+ + H Sbjct: 209 KKAMIALQDYLPHRNLWQKKNCKALFISERHGTRLSTRAIQLRLKVCATMAGIELNMYPH 268 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 +R A+ + + G + + + YT Sbjct: 269 LLRHCFASHVLSSSGDLRAIQEMLGHQNISTTQIYTHV 306 >gi|239905618|ref|YP_002952357.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1] gi|239795482|dbj|BAH74471.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1] Length = 382 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 44/287 (15%), Positives = 92/287 (32%), Gaps = 19/287 (6%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTK-----HIRSGVE 124 L L S+Y + E + I GD ++ + I Sbjct: 96 LSELGSKYLAHMKASGRTEKHIRNIEHLVNHVFIPVLGDKPVDSLSYQENMIPFILHFQG 155 Query: 125 SRKHTP-----SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 T + ++ + +F + + + ++NP ++PK + ++ T +D Sbjct: 156 VSSRTGKVRSQYTVNKYCDYLSFIFNFGIDNGFTSVNPLKIWKKPKVQPWDMK-LTLDDA 214 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVEL 237 ++ + + F L + S+ + + +++ KT + TV + Sbjct: 215 KKIMVNAEPHLKWAMEVCFNLGTRPGESELLSLKWEDIDFKASTVRIYASKTKSYRTVPI 274 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSAT 295 F+K L +T ++ + N T FK +AG+ + +R AT Sbjct: 275 NPEFLKRLEKEQAESQTGYVIEYMGR-NLTTIRKAFKNACKRAGITYQTRMYDLRHLFAT 333 Query: 296 ISADAGATAHELMATYGWKTVDQAE-TYTKGAD-RIRLGIKNSRRIS 340 GA + G TV TY + + + Sbjct: 334 TLLRKGADLAAVSKMMGHSTVKMTADTYYHYMEGEKERAVNLLPALE 380 >gi|220930678|ref|YP_002507587.1| integrase family protein [Clostridium cellulolyticum H10] gi|220001006|gb|ACL77607.1| integrase family protein [Clostridium cellulolyticum H10] Length = 423 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 49/378 (12%), Positives = 110/378 (29%), Gaps = 46/378 (12%) Query: 6 RLPPFVTKERTRHGK---IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62 R P + + ++GK Y ++ + + + Sbjct: 35 RYPIGLKETIDKNGKPCCKTVYKSIYGKKKTGPGGVM---------AEMRNALAALGKGT 85 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRS 121 TL E+ ++ L N+R+ +E+ ++ R D + ++ + I+ Sbjct: 86 YIDPSDKTLIVWCQEWYETYKEPKLKTNTRLKYETSITRLKRYSIADMQLKNLSLELIQK 145 Query: 122 GVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-----GIRP 173 + + + + + A + NP V P+ + + Sbjct: 146 DYNRMAKDGLSEETIKATHSLVNGALEKAEALNKINKNPARHVTIPRTDEDDAEESNTKA 205 Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--- 230 + F S+ + F+L +GLR ++ + IK KT Sbjct: 206 LNDTQLDAFLYQIGRRSKYFMYAFFMLNTGLRPGEALALTRSDIDFTTNKIKVTKTYIEK 265 Query: 231 ------------TIITVELPDGFMKLLAMTPIGKETFFINNDKQ------KMNATQFSIW 272 + V +P + LL + + + + + Sbjct: 266 LKKVQNSTKTASSRRKVPIPSEMISLLKEYMLQQPKKEPTDPLFQTATGKRPSQGYLRKR 325 Query: 273 FKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330 FK AG + H +R A+ + G K V + Y D Sbjct: 326 FKYAGASAGCEWVNLHTMRHTFASRLFKKKVDIKVISELLGHKDVSTTYDIYVHFIDN-- 383 Query: 331 LGIKNSRRISSVVDSDDP 348 + ++ + ++S + + P Sbjct: 384 IVEESVQVLNSDIPENLP 401 >gi|304312423|ref|YP_003812021.1| Phage integrase [gamma proteobacterium HdN1] gi|301798156|emb|CBL46378.1| Phage integrase [gamma proteobacterium HdN1] Length = 434 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 47/373 (12%), Positives = 106/373 (28%), Gaps = 42/373 (11%) Query: 10 FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 + +HG+ R G+ L ++ + + + + Sbjct: 54 YGVNYTDKHGRKT---RFTIGKHGTLTTDEARKAAKKRLAEIVVNDANPQQQRQKDRNEL 110 Query: 70 TLKWLISEYRKSAHWGSLAVNSRI-SFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128 T+ L +EY S + A ++ + + I+ G ++ + +R Sbjct: 111 TVSELFAEYFLSEQFREKAPLTQRGDQGRFGNHILPLIGRLRLSEVNAEKVRKMRREIAE 170 Query: 129 TPS----------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + +A + + ++ WA + + T Sbjct: 171 GKTATSTVKGGEGTARMAVRLLSAVYGWACKNV---EGFAIDNPCRGVNLGRDGERTAIL 227 Query: 179 MQQFKSFWSEGSQPRL------------AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226 + + RL L +G R S+ C +++ +I Sbjct: 228 KDAEEYRRLFEALDRLTATRQVTENAADCIRLLALTGARRSEVCAIRWRNIDAERGAIVL 287 Query: 227 QKTGTIITVELPDGFMKLLA---------MTPIGKETFFINNDKQKMNATQFSIWFKAKA 277 T + LL + + ++ + S + Sbjct: 288 APTEHKTGRKTGAKKTILLPAPALAIVAKRERGQPDDYVFRGEQGSGHTWLNSKIWVRIR 347 Query: 278 TKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD--RIRLGI 333 +A + H +R AT+ A GA A +LM G + Y A+ + R Sbjct: 348 REANLPDGITNHALRHSFATMLAVQGAEAAQLMKALGHAQISTTVRYINTAEDAQRRFLE 407 Query: 334 KNSRRISSVVDSD 346 +++ IS+ ++ Sbjct: 408 QHTAGISAALEGR 420 >gi|254418058|ref|ZP_05031782.1| site-specific recombinase, phage integrase family protein [Brevundimonas sp. BAL3] gi|196184235|gb|EDX79211.1| site-specific recombinase, phage integrase family protein [Brevundimonas sp. BAL3] Length = 306 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 41/306 (13%), Positives = 97/306 (31%), Gaps = 41/306 (13%) Query: 75 ISEYRKSAHW-GSLAVNSRISF-ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP-- 130 I + + + ++ ++ D + + + + Sbjct: 5 IEAFLEMMAVERDASPHTLSAYGRDLADAEAALAEAGGLMQADQEALEVWFADLSRRGLS 64 Query: 131 -SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE- 188 ++A + +S R +++A+ + + +P ++ PK+ + +++++ + + + Sbjct: 65 AATAARRRSSARQFYRFALAEGWRTDDPSRRLDAPKQGRPLPKLLSRDEIDRLLAAAAAR 124 Query: 189 ----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMK 243 G + E SGLR S+ V ++ + I K G L + Sbjct: 125 DAAGGLRLVALVEMAYASGLRVSELLGLKVDAVRRDPAYLIVRGKGGKERLAPLNTAARE 184 Query: 244 LLAMT------------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-- 283 + P F + + +F+ A AG++ Sbjct: 185 AIKAWLTARDARLKGKDGRKPEAPDSPWLFPSSGRTGHLTPRRFAQLLDEAAPVAGIDPA 244 Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342 S H +R AT + GA + G + + YT + R++ V Sbjct: 245 RVSPHVLRHAFATHLLEGGADLRVVQTLLGHADIATTQIYTHV---------ATDRLAQV 295 Query: 343 VDSDDP 348 V + P Sbjct: 296 VQQNHP 301 >gi|331269369|ref|YP_004395861.1| phage integrase family site specific recombinase [Clostridium botulinum BKT015925] gi|329125919|gb|AEB75864.1| phage integrase family site specific recombinase [Clostridium botulinum BKT015925] Length = 357 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 41/342 (11%), Positives = 97/342 (28%), Gaps = 31/342 (9%) Query: 12 TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK---- 67 +++ + + I ++ G+ + T A +A + + Sbjct: 7 YRQKDKGWQFIISYKDNMGKWKQKSKQGFKTKKDAKPAAEKMLKELKNTTKNVPVNNDLI 66 Query: 68 PTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 T L + Y + ++ S+++ F + + ++I I+S V+ Sbjct: 67 KVTFNQLTTIYLDHITLYKEY--HTVKSYKNCFSKFKD-LNNKRIKEIKKHDIQSIVDKL 123 Query: 127 ---KHTPSSAIQFLTSMRVLFKWAVRQEY-VAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 S+ +++ + + F + + P ++++ PK K + + Sbjct: 124 LKEHLKYSTVKKYVGILNMFFIYVKDDLNLIFELPTVNIKIPKEKEYSNKIALTKKQLNK 183 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT----------- 231 + ++ + +G+R + + SI K Sbjct: 184 LLKELQDNKYYMVAFIAANTGMRLGEVLGLTWDSIDFKRSSITVNKQWKVLKTRKSGFGS 243 Query: 232 ------IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285 T+ L +K L T N ++ AG+ + Sbjct: 244 LKSKNSYRTIPLSPNTLKELKNYKKNNPTDINNRVTPFNASSIDKYLNPKLKELAGI--T 301 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 H +R AT G G + Y+ D Sbjct: 302 MHELRHTYATALISNGVDFKTAAKILGHTVEMTMKIYSHVTD 343 >gi|15605070|ref|NP_219854.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis D/UW-3/CX] gi|76789073|ref|YP_328159.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis A/HAR-13] gi|166154559|ref|YP_001654677.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis 434/Bu] gi|166155434|ref|YP_001653689.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|237802772|ref|YP_002887966.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis B/Jali20/OT] gi|237804694|ref|YP_002888848.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis B/TZ1A828/OT] gi|255348711|ref|ZP_05380718.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis 70] gi|255503251|ref|ZP_05381641.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis 70s] gi|255506929|ref|ZP_05382568.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis D(s)2923] gi|301335822|ref|ZP_07224066.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis L2tet1] gi|34222768|sp|O84351|XERC_CHLTR RecName: Full=Tyrosine recombinase xerC gi|123606950|sp|Q3KM11|XERC_CHLTA RecName: Full=Tyrosine recombinase xerC gi|254799329|sp|B0B7R6|XERC_CHLT2 RecName: Full=Tyrosine recombinase xerC gi|254799330|sp|B0BBY1|XERC_CHLTB RecName: Full=Tyrosine recombinase xerC gi|3328768|gb|AAC67942.1| Integrase/recombinase [Chlamydia trachomatis D/UW-3/CX] gi|76167603|gb|AAX50611.1| DNA integration/recombination/inversion protein [Chlamydia trachomatis A/HAR-13] gi|165930547|emb|CAP04042.1| DNA recombination protein [Chlamydia trachomatis 434/Bu] gi|165931422|emb|CAP06996.1| DNA recombination protein [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|231272994|emb|CAX09906.1| DNA recombination protein [Chlamydia trachomatis B/TZ1A828/OT] gi|231274006|emb|CAX10799.1| DNA recombination protein [Chlamydia trachomatis B/Jali20/OT] gi|289525388|emb|CBJ14865.1| DNA recombination protein [Chlamydia trachomatis Sweden2] gi|296434940|gb|ADH17118.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis E/150] gi|296435866|gb|ADH18040.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis G/9768] gi|296436792|gb|ADH18962.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis G/11222] gi|296437726|gb|ADH19887.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis G/11074] gi|296438660|gb|ADH20813.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis E/11023] gi|297140225|gb|ADH96983.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis G/9301] Length = 315 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 96/302 (31%), Gaps = 43/302 (14%) Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD------------------ 110 T+ + Y K+ SL ++ ++ + Sbjct: 3 TSFYAFLD-YLKNMKASSL--HTLRNYCMDLSSLKCFLEKKSDLSPTPPLSLHDNTYDYP 59 Query: 111 ---YRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164 + T +IR + + H+ + + L++++ ++ V+ + + NP + P Sbjct: 60 PLSFSLFTKDNIRLYLLEQIQTHHSKRTVRRRLSAIKSFARFCVKNQLIPENPAEMIRGP 119 Query: 165 KRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220 + E P T E + + G + R E SGLR S+ + Sbjct: 120 RLPQELPSPLTYEQVLALMAAPELDKVTGFRDRCLLELFYSSGLRISEITALNRADIDFQ 179 Query: 221 IFS-IKTQKTGTIITVELPDGFMKLLAMTPIG---------KETFFINNDKQKMNATQFS 270 K V + ++ L + F+N ++++ Sbjct: 180 SHLLHIRGKGKKERIVPMTKVAVQWLQDYLNHPDRASVEQDHQACFLNRFGKRLSTRSID 239 Query: 271 IWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 F+ K G++ + H +R AT + G + G +++ YT + + Sbjct: 240 RKFQQYLLKTGLSGSITPHTIRHTIATHWLERGMDLKTIQLLLGHTSLETTTIYTHVSMK 299 Query: 329 IR 330 ++ Sbjct: 300 LK 301 >gi|85711580|ref|ZP_01042638.1| Site-specific recombinase XerC [Idiomarina baltica OS145] gi|85694732|gb|EAQ32672.1| Site-specific recombinase XerC [Idiomarina baltica OS145] Length = 302 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 36/285 (12%), Positives = 87/285 (30%), Gaps = 25/285 (8%) Query: 71 LKWLISEYRKSAH-WGSLAVNSRISFES----YFDQIIRKSGDFDYRKITTKHIRS---G 122 L + + + LA + +++ +Q+ + G ++T G Sbjct: 3 LHEIQHRWLQQLEGERGLAQLTIKNYQRLTGIDIEQL-DRQGVEHAHQLTRSIFERLLVG 61 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW---TKEDM 179 S L++ R ++ + +++ +P ++ PK + + + Sbjct: 62 WRRDGLGERSIALKLSAWRTFVQYMLDYQHLNDDPLSGLKAPKIPKRLPKNLDVDSISHL 121 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------- 232 + + E L SGLR ++ + + ++ G+ Sbjct: 122 LELPLDDELAIRDSAMMELLYSSGLRLAELVSLDMDSIDLRYGQLRVVGKGSKTRIVPVG 181 Query: 233 ---ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287 I ++ + + FI+ Q+++ + GV N H Sbjct: 182 KIAIKAIQRWLKVRANWLAMRPEVALFISQRNQRISQRTVQQRLNFWGKQQGVVGNLHPH 241 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 +R A+ ++ + G + + YT D RL Sbjct: 242 KLRHSFASHMLESSGDLRAVQELLGHANLSTTQVYTH-LDFKRLA 285 >gi|304389803|ref|ZP_07371762.1| integrase/recombinase XerD [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315657108|ref|ZP_07909992.1| integrase/recombinase XerD [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|304326979|gb|EFL94218.1| integrase/recombinase XerD [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315492211|gb|EFU81818.1| integrase/recombinase XerD [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 323 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 36/290 (12%), Positives = 82/290 (28%), Gaps = 41/290 (14%) Query: 85 GSLAVNSRISFESYFDQIIRKS-----GDFDYRKI------TTKHIRSGVESR---KHTP 130 L+ + ++ + +++ GD + IR+ + + + Sbjct: 26 RGLSPQTVRAYLTDLRELMTFLVDSDSGDGPAAQQLRADLANPARIRAWLGAMSRAGMSR 85 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----- 185 ++ + + S R WA + V + ++ + + D Sbjct: 86 ATLARRVASFRTFASWAQVRGIVPGDAGQNLRASRPDNALPTVLSATDAAHLLETARAAA 145 Query: 186 --------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236 + A E L +G+R S+ + ++ + +++ V Sbjct: 146 YPEASTAPNPVKLRDWAALELLYATGIRVSELTGLELGNINKSQRTVRVTGKGDKQRVVP 205 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNA------------TQFSIWFKAKATKAGVN- 283 L +N +K +N +AGV Sbjct: 206 YGIPAGLALEEYLEKGRPALVNPEKPALNRVFLGAKGGMLDTRIVRGMLHRLTAQAGVPD 265 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 HG+R +AT D GA + G ++ + YT + + Sbjct: 266 LGPHGLRHTAATHLLDGGADLRSVQEILGHASLATTQRYTHLSMDKLRAV 315 >gi|160894142|ref|ZP_02074920.1| hypothetical protein CLOL250_01696 [Clostridium sp. L2-50] gi|160894145|ref|ZP_02074923.1| hypothetical protein CLOL250_01699 [Clostridium sp. L2-50] gi|156864175|gb|EDO57606.1| hypothetical protein CLOL250_01696 [Clostridium sp. L2-50] gi|156864178|gb|EDO57609.1| hypothetical protein CLOL250_01699 [Clostridium sp. L2-50] Length = 351 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 40/291 (13%), Positives = 90/291 (30%), Gaps = 14/291 (4%) Query: 45 PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR 104 L + K E + K+ + + + + + + S +++ + ++ Sbjct: 47 EKLQEVLRYTLAKYEVTENQNKEKYSEQNYVELFLSAKRIEGCSEKSLKYYKATIEAMLD 106 Query: 105 KSGDFDYRKITTKHIR----SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 + D + I T IR E +K + + + F W ++Y+ +P Sbjct: 107 EL-QKDVKHIVTDDIRGYLTEYQEKKKSSKVTIDNIRRILSSFFSWLEDEDYILKSPVRR 165 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220 + R K T ++ E ++ + +E + + L +G+R + + N Sbjct: 166 IHRVKTGTNIKETYSDEALELMRDNCTE-LRDLAIIDMLASTGMRVGEMVLLNRDDIDFN 224 Query: 221 IFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT------QFSIWF 273 V L + + + Sbjct: 225 ERECVVFGKGSKERVVYFDARTKIHLQNYLESRRDNNPALFVSLKSPHKRLKIGGVEVRL 284 Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + + G+NK H R+ AT++ D G +L G + +D Y Sbjct: 285 REFGKQLGLNKVHPHKFRRTLATMAIDKGMPIEQLQQLLGHRKIDTTLQYA 335 >gi|148549356|ref|YP_001269458.1| phage integrase family protein [Pseudomonas putida F1] gi|148513414|gb|ABQ80274.1| phage integrase family protein [Pseudomonas putida F1] Length = 326 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 64/334 (19%), Positives = 117/334 (35%), Gaps = 36/334 (10%) Query: 1 MTPSLR---LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPK 57 M P + LPP + +HG Y+ G+ RL ++ + AY + G Sbjct: 1 MRPRKKDRHLPPCMY---MKHG---AYYLVRKGKWERLDKDYQGALL-AYAKIMGGKGQG 53 Query: 58 REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117 LI + + LA N+ +E+ +++ + +F+ R++ + Sbjct: 54 EMPR------------LIDDALDAMR-KRLAENTIKQYEAAAEKLKKYLAEFEPRQVLPR 100 Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 H+ + TP+ A + ++ +R++F +A+ Q+ V NPC ++R K +E Sbjct: 101 HVAALKLHMSDTPNMANRVISFLRMVFNYALEQQIVDSNPCTGIKRHTEKKRDRYITDEE 160 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237 + R E +G R D + + + QKTG + V + Sbjct: 161 FAAICDAA---SPYIRSILEMCYLTGQRIGDVLAIKLSDISEKGIAFDQQKTGAKLIVGM 217 Query: 238 PDG------FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVR 290 K + G F + ++ FK KA V + H +R Sbjct: 218 TPDLEQLIARTKAIPRKVRGLTLFCTRGGGKPVSYETVKDAFKKACEKAKVTGATIHDLR 277 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324 S T + D G G E Y + Sbjct: 278 AKSLTDTDDQGND---AQKLGGHTNAKMTERYLR 308 >gi|323499333|ref|ZP_08104310.1| super-integron integrase IntIA [Vibrio sinaloensis DSM 21326] gi|323315721|gb|EGA68755.1| super-integron integrase IntIA [Vibrio sinaloensis DSM 21326] Length = 320 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 41/304 (13%), Positives = 80/304 (26%), Gaps = 54/304 (17%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134 I EY +S A + ++ + + I SG K+ + + A Sbjct: 9 IKEYMQS---RRYAPKTIQAYLLWITKFIAYSGMQHPSKLKEHEVEQFLTYLAVEEKVAA 65 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194 + + R+ + ++ K + P + + + +L Sbjct: 66 KTQALALNAINFLYREYFRTPLSVE-MKFQKSLLDRKLPVVLNKQEMRRFVQHIDPRYKL 124 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--------------------------- 227 L SGLR + R +Q + + +++ Sbjct: 125 HIMLLYGSGLRVMECVRLRIQDVDFHYKALRIWQGKGGKNRVVTLADELLPLLKQQQSVA 184 Query: 228 --KTGTIITVE-----------LPDGFMKLLAMTPIGKETFF--------INNDKQKMNA 266 I L + + +N Sbjct: 185 LAYYNKDIHSPGYEGVHLSNSLQRKYPGAELDFNWHFMFPSHKLSIDPESMGWKRHHINE 244 Query: 267 TQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 T K A AG++K + H +R AT ++GA + G V + YT Sbjct: 245 TALQRAVKRSAQDAGIDKNVTCHTLRHSFATHLLESGADIRTVQEQLGHSDVKTTQIYTH 304 Query: 325 GADR 328 +R Sbjct: 305 VIER 308 >gi|224372317|ref|YP_002606689.1| phage integrase [Nautilia profundicola AmH] gi|223589124|gb|ACM92860.1| phage integrase [Nautilia profundicola AmH] Length = 269 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 33/259 (12%), Positives = 95/259 (36%), Gaps = 11/259 (4%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134 I+++ + + N+ ++E+ ++ + + I R + + Sbjct: 9 INKFLNFVK-KTKSHNTYKTYETVLNE-AINFIEIENNIINITPYRLHIAELNKK--TIA 64 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194 + ++++R F++ + + E K +P + E +++ + L Sbjct: 65 KKVSALRSFFEFL--ETEGHKFKIIGDEHIKVPKTLPKPVSMEHIKKALKSATMD--EYL 120 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT--PIGK 252 A + GLR S++ + ++ + I+ + + + + K Sbjct: 121 AIITIFSLGLRISEAAGITLSDIKGDWIEIRGKGA-KTRLLPVHPKLKDFINKYLEIHPK 179 Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYG 312 + + + + A + + K G++ + H +R AT GA +++ G Sbjct: 180 KEYLFEKEGVPLGADKIRYLIQRAFKKHGIHVTPHQLRHSFATYMLQNGARINDVSELLG 239 Query: 313 WKTVDQAETYTKGADRIRL 331 + + + YTK ++ ++L Sbjct: 240 HEFISTTQIYTKLSNSLKL 258 >gi|219871693|ref|YP_002476068.1| putative site-specific tyrosine recombinase XerC [Haemophilus parasuis SH0165] gi|219691897|gb|ACL33120.1| possible site-specific tyrosine recombinase XerC [Haemophilus parasuis SH0165] Length = 261 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 35/227 (15%), Positives = 72/227 (31%), Gaps = 13/227 (5%) Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170 T + I S + + S L ++R + V+Q + +NP L ++ PK Sbjct: 13 LDASTVRWILSQSHKQGLSAKSIGLRLVALRQFLAFLVKQGELKVNPTLGIKSPKANKHL 72 Query: 171 IRPWTKEDMQQFKS---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT- 226 + E + Q + + E + SGLR S+ + + ++ Sbjct: 73 PKNIDAEQIGQLLNIDSNEPLDLRDVAMMELMYSSGLRLSELQGLDLGDMDLPNREVRLL 132 Query: 227 QKTGTIITVELPDGFMKLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATK 279 K V + + + F+N +++ + K K Sbjct: 133 GKGNKERIVPIGSKALDAIEQWLAVRGQFHPKDNAVFLNQRGGRLSHRSIQLAMKKWGQK 192 Query: 280 AGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 ++ H +R AT +A + G ++ + YT Sbjct: 193 QALDTHLHPHKLRHSFATHMLEASQDLRAVQELLGHSSLSTTQIYTH 239 >gi|310778330|ref|YP_003966663.1| integrase family protein [Ilyobacter polytropus DSM 2926] gi|309747653|gb|ADO82315.1| integrase family protein [Ilyobacter polytropus DSM 2926] Length = 297 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 47/285 (16%), Positives = 97/285 (34%), Gaps = 24/285 (8%) Query: 71 LKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDF-------DYRKITTKHIRSG 122 L+ LI ++ +G ++N+ SF+ Q+ D +++ + Sbjct: 6 LEKLIKDFIYFEEFGDGKSLNTIKSFKKDLGQLRDYLSKKENINNPKDIKEMALRGFLVE 65 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 ++ S + ++S+R FK+ Q Y+ NP + + P K + TKE++ + Sbjct: 66 LQKENIGKRSLNRKISSLRTFFKYLKNQGYIEKNPTILLTGPAFKADLPEILTKEEIDRI 125 Query: 183 KSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 + G + RL E L SG+R S+ G ++ V Sbjct: 126 REVIDIEKTNGIRDRLIVELLYSSGIRTSELLSLGESLFDLEKRQLRVTGGKQPRIVFFS 185 Query: 239 DGFMKLLAMTPIGKETFFINNDK----------QKMNATQFSIWFKAKATKAGVNK--SA 286 + + K+ + +++ + A KA + K S Sbjct: 186 ERTREYFKRYVESKKKKYRAKYTADILFVNGSGTRLSDRSLRRIIERYAKKAEIQKEISP 245 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 H R G L G +V+ + Y + ++ ++ Sbjct: 246 HTFRHTFGVYMLTHGMGLMHLQELMGHVSVESTKIYEEFVNKPKI 290 >gi|306836381|ref|ZP_07469359.1| tyrosine recombinase XerD [Corynebacterium accolens ATCC 49726] gi|304567741|gb|EFM43328.1| tyrosine recombinase XerD [Corynebacterium accolens ATCC 49726] Length = 305 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 39/278 (14%), Positives = 83/278 (29%), Gaps = 22/278 (7%) Query: 72 KWLISEYRK-SAHWGSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVESRK 127 I ++ H A + + + + DF+ + + + + V K Sbjct: 18 DEAIEDFADFQLHVKGRAEATVRGYRADLKNLAQEIDTFADFNLNNL-RQWLGNAVAEGK 76 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED-----MQQF 182 + A + S++ WA R+ Y+ + + PK + Sbjct: 77 ARATLARRT-ASVKAFSTWAERERYLTRDVAARLVTPKVGQHLPTVMAPQQAGELVGNAV 135 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 + + E L +G+R ++ R ++ + + + V Sbjct: 136 SVDEAHFQRDSAILELLYATGMRVAELVRLDLEDVDFKRSTARVTGKGNKQRVVPFGAAA 195 Query: 242 MKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWFKAKATKAGV-NKSAHGVRK 291 L G + Q +++ Q AT G + HGVR Sbjct: 196 TDALQQWIDGGRKEMARGETQAIFVGSRGARIDQRQVRRIVDKAATVTGTSGLTPHGVRH 255 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +AT + GA + G ++ + YT + + Sbjct: 256 LAATHLLEGGADLRVVQELLGHSSLSTTQIYTHVSAKR 293 >gi|325860247|ref|ZP_08173372.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] gi|325482334|gb|EGC85342.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] Length = 407 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 51/362 (14%), Positives = 98/362 (27%), Gaps = 30/362 (8%) Query: 1 MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60 M ++ + R + +Y K R + + Sbjct: 54 MMGKPKV--HIKHNRRKENLQLYLIAKPRTPAERQQNKETLKLAAKIRAEREQQFKESML 111 Query: 61 -INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK---------SGDFD 110 + + Y S L + ++ G Sbjct: 112 GYRLKKDRNVNFLDYYQAYIDSYTKKDL-----RMIKIALNRFKDFLKEQYPVYEFGIKP 166 Query: 111 YRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168 IT + VE + A + + ++A+ E + +PC V + Sbjct: 167 -DLITKDMMEQFVEYLQSRSVGEGAKSIYQRFKKVVRYAIDHEVMLKDPCKGVVCKVDEQ 225 Query: 169 EGIRP---WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225 + + + +E R AF LY GLR D +++ +K Sbjct: 226 ILRKDVLSMDEIQSLIQCHYDNENPNVRRAFILCLYCGLRFCDVKDLTYKNVDYTNRLLK 285 Query: 226 TQKTGTIITVELPDGFMKL---LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 ++ T + L L ++ + S K +AG+ Sbjct: 286 FEQNKTKGHSAHSGVIIPLNDGLLSLIGEAPEDLNSSIFNLPSYESCSKSVKRWIKRAGI 345 Query: 283 NK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 NK S H R A + GA + + G + E YT+ D +L + + Sbjct: 346 NKHISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVD--KLKSEAINSLP 403 Query: 341 SV 342 + Sbjct: 404 EL 405 >gi|213964199|ref|ZP_03392435.1| tyrosine recombinase XerC [Capnocytophaga sputigena Capno] gi|213953166|gb|EEB64512.1| tyrosine recombinase XerC [Capnocytophaga sputigena Capno] Length = 308 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 31/293 (10%), Positives = 85/293 (29%), Gaps = 31/293 (10%) Query: 86 SLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSGVESRK---HTPSSAI 134 ++++ +++ + + + + I+ + + S Sbjct: 15 KYSIHTVEAYKHDLRAFEKFIKSEYEDKEEECPLERADQEDIKKWIIQLSQQEMSFRSIN 74 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR------PWTKEDMQQFKSFWSE 188 + L++++ + + + + + ++P + + + K + Sbjct: 75 RKLSALKTYYTFLKKTKQIEVSPFEKGIFLLKTEKRQKLPFSEAEIEKVLSYFSSKSSFD 134 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAM 247 + R E L +G+R S+ + + + K + + + L Sbjct: 135 EVRDRAVIEMLYATGIRRSELANLRLSDVDLAQKQLKVSGKGDKERYIPIIPELEETLKE 194 Query: 248 T-----PIGKETFFINNDKQKMNATQFSIWFKAK------ATKAGVNKSAHGVRKFSATI 296 + E K +S A + S H +R A+ Sbjct: 195 YLKLREEVANEKSQNYLFLVKNGKKLYSTLVYRIINSYFSAVTPKKDVSPHVLRHSFASH 254 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIKNSRRISSVVDSDD 347 D GA + + G ++ + YT A+ + K R + D+ Sbjct: 255 LLDNGADLNTVKELLGHSSLASTQVYTNTSLAELKKQYKKAHPRADRKEEDDN 307 >gi|162148139|ref|YP_001602600.1| site-specific tyrosine recombinase XerC [Gluconacetobacter diazotrophicus PAl 5] gi|161786716|emb|CAP56299.1| Tyrosine recombinase xerC [Gluconacetobacter diazotrophicus PAl 5] Length = 324 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 42/310 (13%), Positives = 89/310 (28%), Gaps = 47/310 (15%) Query: 69 TTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFD--------YRKITTKHI 119 T L + + + ++ D+ + G +++ + Sbjct: 1 MTGADLRDAFLDWMRDERRASPLTIAAYRGDLDRFLDFIGAHVGGTVDLAVLDRLSLADL 60 Query: 120 RSGVESRKHTPSSAIQF------------------LTSMRVLFKWAVRQEYVAINPCLSV 161 R+ + + Q +++MR +++ R+ V + Sbjct: 61 RAWLAFEHAQGHALAQRDRGRSSTPDRAARTRARRVSAMRSFYRYLARRHGVTNPAPGLL 120 Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSE-------GSQPRLAFEFLLYSGLRCSDSCRAGV 214 P+ K+ RP ++ + ++ F L GLR S++ V Sbjct: 121 AAPRTKSPLPRPLSEAQALDVPDGVGDLAVTPLGQARDAALFLLLYGCGLRISEALGLDV 180 Query: 215 QHLQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-- 268 + L + + K G V + ++L + Sbjct: 181 RDLDHALSAGGTLLVRGKGGRERLVPILPAVARVLTDWRARHPAPLPDAPLFPGVRGGRL 240 Query: 269 ----FSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 +A AG+ + H +R AT + GA + G ++ + Y Sbjct: 241 QPAVAQRAMRAWRDMAGLPDHATPHALRHSFATHLMEGGADLRTIQELLGHASLSTTQRY 300 Query: 323 TKGADRIRLG 332 T AD RL Sbjct: 301 T-LADEARLM 309 >gi|326562807|gb|EGE13102.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis 46P47B1] gi|326563212|gb|EGE13480.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis 12P80B1] gi|326563472|gb|EGE13735.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis 103P14B1] gi|326573782|gb|EGE23739.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis 101P30B1] Length = 330 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 36/278 (12%), Positives = 89/278 (32%), Gaps = 31/278 (11%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYR----KITTKHIRSGVESRK 127 + + + ++ ++++ Q G +T + +E K Sbjct: 30 WCDELRLQNYSKHTITTYQTALIQFFNFLESDNYLGGDPLACRRQDLTR-FFSTRLEEEK 88 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI--------RPWTKEDM 179 P SA L+++R+ +++ ++Q +A+NP + + + + Sbjct: 89 IKPISAKLSLSAIRIFYQFLIKQGVIAVNPTTGYKIKSAPRKLPTVADELLIKQLLDQKT 148 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----------QKT 229 + + + + FE + SGLR S+ + + +I ++ Sbjct: 149 PEDTAKAYLWIRDKAMFELMYSSGLRLSELAGLNMGDVNFDIGIVRVLGKGNKTRQVPVG 208 Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AH 287 + + L K F +++ + K AT AG+ + H Sbjct: 209 KKAMIALQDYLPHRNLWQKKNCKALFISERHGTRLSTRAIQLRLKVCATMAGIELNMYPH 268 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 +R A+ + + G + + + YT Sbjct: 269 LLRHCFASHVLSSSGDLRAIQEMLGHQNISTTQIYTHV 306 >gi|309804168|ref|ZP_07698246.1| site-specific recombinase, phage integrase family [Lactobacillus iners LactinV 11V1-d] gi|309805694|ref|ZP_07699734.1| site-specific recombinase, phage integrase family [Lactobacillus iners LactinV 09V1-c] gi|308163751|gb|EFO66020.1| site-specific recombinase, phage integrase family [Lactobacillus iners LactinV 11V1-d] gi|308164947|gb|EFO67190.1| site-specific recombinase, phage integrase family [Lactobacillus iners LactinV 09V1-c] Length = 179 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 27/161 (16%), Positives = 50/161 (31%), Gaps = 15/161 (9%) Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-------------SI 224 + + G + R E L +G+R S+ + + Sbjct: 1 MINMPDTTTDLGIRDRAILETLYATGMRVSEVINLNEDSIHEELHLIKVFGKGSKQRLIP 60 Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284 + + I K L + ++ F+N+ K+ K AG+NK Sbjct: 61 ISNVAMSWIKKYQITVRNKTLLESGKFEKAIFLNSRGGKITRQAVWQMIKRYCQLAGINK 120 Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + H +R AT + GA + G + + YT Sbjct: 121 NVTPHTLRHTFATHLLENGADLRIVQEILGHSDISTTQIYT 161 >gi|28572274|ref|NP_789054.1| DNA recombinase [Tropheryma whipplei TW08/27] gi|28410405|emb|CAD66791.1| putative DNA recombinase [Tropheryma whipplei TW08/27] Length = 349 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 41/299 (13%), Positives = 87/299 (29%), Gaps = 59/299 (19%) Query: 86 SLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSG--VESRKHTPSSAIQFLTSM 140 L+ + ++ + + G+ ++ + I R S+ + ++ Sbjct: 34 GLSDATLQTYRNSLGIYLSWLGEQGTQRLSEVNSNAIERFLEYRQRHTRKSTLANTVAAL 93 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG------SQPRL 194 R + V + A+NP +++PK P + +++ + R Sbjct: 94 RTFHRHLVLEGRQALNPTEKLQQPKVPKALPHPLSLDEIINLLKAADANQAREISLRDRA 153 Query: 195 AFEFLLYSGLRCSDSCRAGVQHL--------------QNNIFSIKTQKTGTIITVELPDG 240 E L +G R S++ V + + L Sbjct: 154 LIEVLYGTGARISEAVSLNVNAFAESDQNLLRLTGKGNKQRMVLFGSYARNAVDNYLQHS 213 Query: 241 FMKLLAMTPIGKE--------------------------------TFFINNDKQKMNATQ 268 KLLA + + + F++N +++ Q Sbjct: 214 RPKLLARSHVYRNITDASTLKYRPTSSTIGDAEDGVLTATAAGVPWLFLSNRGKRLTRQQ 273 Query: 269 FSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 + A + + S H +R AT AGA + G +++ YTK Sbjct: 274 AGNIIRKLGEAAEIGRYISPHSLRHSFATHMLQAGADIRTVQELLGHSSINTTSVYTKV 332 >gi|299132835|ref|ZP_07026030.1| tyrosine recombinase XerD [Afipia sp. 1NLS2] gi|298592972|gb|EFI53172.1| tyrosine recombinase XerD [Afipia sp. 1NLS2] Length = 319 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 46/296 (15%), Positives = 88/296 (29%), Gaps = 41/296 (13%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGV---ESRKH 128 I + N+ ++ S + + D+ T+ +R + + R Sbjct: 10 IDLFLDMLAAEQGAGDNTLNAYRSDLEDLAAFLARAKQDFAHADTQVLRDYLADLDQRGF 69 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 SS + L+SMR LF++ + + +P + PKR + + D+ + E Sbjct: 70 KSSSVARRLSSMRHLFRFLLNERKRTDDPAAILSGPKRGRALPKVLSIADVDRLLGKARE 129 Query: 189 -------------GSQPRLAFEFLLYSGLRCSDSC-------------------RAGVQH 216 + E L +GLR S+ + Sbjct: 130 FADRDQPPLQKVRAMRLWCLLEVLYATGLRVSELVALPLSAARRDARMIVVRGKGDKERL 189 Query: 217 LQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK 276 + N S + + P K F + + + F+ K Sbjct: 190 VPLNQSSRDAMAAYLAAAGTAKEEKGEKAKSEPASKWLFPSSGESGHLTRQHFARDLKEL 249 Query: 277 ATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 A AG++ S H +R A+ GA + G + + YT + Sbjct: 250 AVAAGISPRLISPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEER 305 >gi|257439773|ref|ZP_05615528.1| tyrosine recombinase XerC [Faecalibacterium prausnitzii A2-165] gi|257197793|gb|EEU96077.1| tyrosine recombinase XerC [Faecalibacterium prausnitzii A2-165] Length = 395 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 49/307 (15%), Positives = 93/307 (30%), Gaps = 46/307 (14%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTK-------- 117 I EY + + N+ S+ R D + + I K Sbjct: 23 IVEYVRYLEVIAGKSANTAFSYYCDLRGFSRFMKRRRGLVPADTEIKDIDPKGLDTAFWG 82 Query: 118 ---------HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRK 167 ++ + SS + L S+ + + V Q + NP S++ PK+ Sbjct: 83 SVSKEDIYEYLYFLNRECGNKKSSTARRLASLHGFYDYLVNQVNKLTENPTASIKPPKQD 142 Query: 168 TEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223 + T E S + L G+R S+ + + Sbjct: 143 KVLPKYLTAEQSMDLLESTQYQSDFPERDYCMVVLFLNCGMRLSELVGMDLGDIDLEQRQ 202 Query: 224 IK-TQKTGTIITVELPDGFMKLLAMTPIGKETFF-----------INNDKQKMNATQFSI 271 I+ K V L + ++ L + + T K++++ + Sbjct: 203 IRLFGKGHKERMVYLNEACVEALQLYLAKRNTMEGLNPKEKAVFVTRRRKERISNRRVEQ 262 Query: 272 WFKAKATKAGVN-KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD-R 328 AG+ S H +R +AT+ G L G +V + YT + + Sbjct: 263 LVTGAMKAAGLKGFSTHKLRHTAATLMYQTGNVDILTLKQLLGHSSVGTTQIYTHLQEFQ 322 Query: 329 IRLGIKN 335 +R I+ Sbjct: 323 VRAAIEQ 329 >gi|303236540|ref|ZP_07323125.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] gi|302483288|gb|EFL46298.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] Length = 418 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 40/308 (12%), Positives = 87/308 (28%), Gaps = 16/308 (5%) Query: 45 PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR 104 Y +A S + + + + +++ + ++E + Sbjct: 104 REYDNASLYSDTETAQAEQKERLQQNFIKYFDK-VADKRHRNSSLSIQTNWERVHVLLKM 162 Query: 105 KSGDFDY-RKITTKHIRSGVESRKHTP-----------SSAIQFLTSMRVLFKWAVRQEY 152 +GD +I + P ++A + + + K A Y Sbjct: 163 FAGDTLLFSQIDNRLAEDFKFFLLSAPCGGSKKGTISRNTASTYFSIFKAALKQAFVDGY 222 Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212 + I+ ++ + + T +++ + + E + A F +GLR D + Sbjct: 223 LTIDLSAKIKGIQEQESRREYLTLDELNKLANTPCERDVLKRAALFSALTGLRHCDIQKL 282 Query: 213 GVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272 + K T + + N + S Sbjct: 283 KWDEIAIEGNQAKLLFTQKKTKGVEYMPISEQAFKLCGEPRQPKQLVFEGLPNPSWISRP 342 Query: 273 FKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 +A KAG+ + S H R AT+ G + + G V + Y K D + Sbjct: 343 LRAWIEKAGIQKHLSFHCFRHTFATLQLANGTDIYTVSKMLGHTNVKTTQVYAKVVDEKK 402 Query: 331 -LGIKNSR 337 + Sbjct: 403 NKAANAIQ 410 >gi|239907662|ref|YP_002954403.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1] gi|239797528|dbj|BAH76517.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1] Length = 352 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 45/344 (13%), Positives = 101/344 (29%), Gaps = 18/344 (5%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS---------PR 65 R +G +R G + + A S Sbjct: 10 RKNNGTYYVAYRNAEGNQTTKTFGKGREGRRAAQKFDKQVKDHGPVPPSTPEAISEVVAV 69 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG-- 122 L L Y + V + S+ +I +I I + Sbjct: 70 ADKIYLDQLAQIYINTRKVEGTTVKTLNEIRSFLKKHLIPVFAQRPIDEIRYDEILTIVG 129 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQ 181 H+P + ++L+ ++ +F++ V+Q+ + NP ++ K + + Sbjct: 130 KAYADHSPVTRGRYLSYLKTVFQFGVKQDLIEKNPLRHWKKAKEHPRDTKLTVADLMKIK 189 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 + +A+ + +G + + + + KT + + + F Sbjct: 190 AVAAPHLAWAIEVAWNLGVRTGESELFALKWADVDWAQSTVKVFATKTQSARVIPISPEF 249 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISAD 299 M L +T ++ + QF + F++ +A + + +R AT Sbjct: 250 MARLREMQGRAKTEYLIEYAGRP-VKQFRMSFRSACKRAEIPYHVVLYDIRHLFATTLLQ 308 Query: 300 AGATAHELMATYGWKTVDQA--ETYTKGADRIRLGIKNSRRISS 341 G + G +V + Y D R I +++ Sbjct: 309 EGGDLSAVSKLMGHSSVHMTANQYYHLLGDEKRRTIAKLPSLNA 352 >gi|167749654|ref|ZP_02421781.1| hypothetical protein EUBSIR_00612 [Eubacterium siraeum DSM 15702] gi|167657407|gb|EDS01537.1| hypothetical protein EUBSIR_00612 [Eubacterium siraeum DSM 15702] Length = 357 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 41/317 (12%), Positives = 95/317 (29%), Gaps = 55/317 (17%) Query: 73 WLISEYRKSAH-WGSLAVNSRISFESYFDQIIRK-------------SGDFDYRKITTKH 118 ++EY + + + +++ + +R + + K+ Sbjct: 16 ACLTEYLNYLTTIKNRSQLTALNYYTDLRMFMRFLKVKNKLVDANEDFSEIKISDLDDKY 75 Query: 119 IRSGV------------ESRKHTPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPK 165 I++ R + + + S+R +K+ + + A +P L++E P Sbjct: 76 IKAVTLTDAMEFLSFTVSERSNQAKARSRKAVSLRQFYKFLTNNKAWFAASPMLNLELPS 135 Query: 166 RKTEGIRPWTKEDMQQFKS------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219 K + T ++ Q + L G+R S+ V Sbjct: 136 PKNALPKHLTLQECGQLLHEGFKEFSSWMDYRDYAMIIMFLNCGMRLSELVGINVNDFVE 195 Query: 220 NIFSIKTQKTG----------TIITVELPDGFMKLLAMT--------PIGKETFFINNDK 261 NI + V L + + + ++ FI+ Sbjct: 196 NIDPSQPCVKYLSVKVLGKGNKERIVYLNEQCVDAVTKYTEARKSVADPKEKALFISKRG 255 Query: 262 QKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 ++ + + G+ S H +R +AT+ G L G + ++ Sbjct: 256 NRITNRRVEQIIDDRLKACGLAGKGISVHKLRHTAATLMYQNGVDVRVLKEVLGHENLNT 315 Query: 319 AETYTKGAD-RIRLGIK 334 + YT + ++R I Sbjct: 316 TQIYTHVVNTQLRDAIN 332 >gi|90962617|ref|YP_536533.1| Phage integrase [Lactobacillus salivarius UCC118] gi|90821811|gb|ABE00450.1| Phage integrase [Lactobacillus salivarius UCC118] Length = 381 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 59/367 (16%), Positives = 112/367 (30%), Gaps = 51/367 (13%) Query: 11 VTKERTRHGKIIYYFR--------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62 + K + + +Y FR G R IR + + +Y Sbjct: 4 IIKYTNKDNETLYKFRFYAGIDEITGKQRYIRRQGFTSLKAAKDELLKIEYLVSTNQYFK 63 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRS 121 S + ++ E+ ++ ++ E + + D KIT +H + Sbjct: 64 SVKSGK--FGDVLDEWLALHK-ETVKASTWQFIELRANNHVRPYFKDMYVDKITLRHCQD 120 Query: 122 GVES-RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 V K P + + L+ ++ +A+R + NP L V +PK++ + Sbjct: 121 FVNKTFKKAPVAYVYSLSIVKNTLDYALRLGMIESNPMLYVIKPKKQASISDKHDNYYNK 180 Query: 181 QFKS-----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--- 232 + F L YSG+R + L +I KT Sbjct: 181 DELKKFLDVAKDTSLKKYTLFRLLAYSGMRIGECLALTWHDLDYKNNTIAINKTLARTNN 240 Query: 233 -------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT------------ 267 + L + +++L M + + + M++ Sbjct: 241 GIKIQTPKTKASNRVISLDNETIQVLKMWQLEQRKQLLKVGINAMDSKQLIFSNGKNSFI 300 Query: 268 ---QFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETY 322 + K A KAG++ + HG R AT+ +G ++ A G V Y Sbjct: 301 IVPTVRLAIKQIAKKAGIHSITTHGFRHTHATLLFASGLDIKQVQARLGHSNVQTTLNIY 360 Query: 323 TKGADRI 329 T Sbjct: 361 THAMKEK 367 >gi|307275392|ref|ZP_07556535.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecalis TX2134] gi|306508026|gb|EFM77153.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecalis TX2134] Length = 384 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 53/385 (13%), Positives = 117/385 (30%), Gaps = 56/385 (14%) Query: 11 VTKERTRHGKIIYYFRK--------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62 + + + ++G+ +YF+ G + AL + + Sbjct: 4 IKQYQKKNGEKAWYFKIYLGTDPLTGKKKYTTKRGFRTQKEAK---IALARLEMEIQKNG 60 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122 P T + + + ++ + + + I+ G + KI+T + + Sbjct: 61 IPSSTNITFQEVAFMWLENYKNTVKESSYSRTEIIFRKHILPSFGKIEISKISTAYCQKI 120 Query: 123 VESRKHTPSSAIQ--FLTSMRVLFKW-----AVRQEYVAINPCLSVERPKRKTEGIRPWT 175 V + SS F+ M +FK+ Q V + + I+ +T Sbjct: 121 VNTWHSKGSSKQYPLFINYMNQVFKFAINIGVTNQNPVINVIVPKNQDIITSEKKIKFYT 180 Query: 176 KEDMQQFKSFW------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------- 218 K+ +Q F + F L +SG R + L Sbjct: 181 KDQLQIFLKSIEQSESTYITIRDYTLFRLLAFSGCRIGELLALTWDDLNIKTGELQINKT 240 Query: 219 -----NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA------- 266 + S + + T+ L + +L + ++ + + + + Sbjct: 241 IAKSDHYYVSNTPKTKKSNRTLILDAKTITILKKWKLEQKKYLLKLGYTQPSHIFTNEEN 300 Query: 267 -----TQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA- 319 + + KA + HG R A++ AGA E+ G + Sbjct: 301 EFTINQAITDRYNIYRKKANLPNIGLHGFRHTHASLLYYAGADHKEVQERLGHANIKTTL 360 Query: 320 ETYTKGADRIRLGIKNSRRISSVVD 344 +TYT + + K + ++S + Sbjct: 361 DTYTHLTNDGK--EKTTEKLSKYIG 383 >gi|307290990|ref|ZP_07570879.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecalis TX0411] gi|306497947|gb|EFM67475.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecalis TX0411] Length = 387 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 52/371 (14%), Positives = 109/371 (29%), Gaps = 51/371 (13%) Query: 11 VTKERTRHGKIIYYFRKGHG-----RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65 + + + + G+ +YF+ G ++ + AL + E + Sbjct: 4 IRQYQKKSGEKAWYFKTYLGIDPLTKKKKYTTKRGFKTQKEAKIALARLEMEIERNGIKQ 63 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 T + + + ++ + + + I G + KI T + + V + Sbjct: 64 SSSITFQEIAVMWLENYKNTVKDSSYSRTNIIFNKHIFPHFGKIEIAKINTAYCQKVVNN 123 Query: 126 RKHTPSSAIQ--FLTSMRVLFKWAVRQEYVAINPC--------------LSVERPKRKTE 169 +S FL M +FK+A+ A NP + + Sbjct: 124 WHTNGTSKQYPLFLNYMNKVFKFAISMGVTAENPTTNVIIPKNKETANPKDTKIKFYNKD 183 Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------- 218 ++ + + QQ + + F L +SG R + L Sbjct: 184 QLQKFLECIHQQPQENNYITLRDYTLFRLLAFSGCRIGELLALTWDDLNLKTGELQINKT 243 Query: 219 -----NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA------- 266 S + + + L ++ L ++ F + + Sbjct: 244 VTKSDTYYVSSTPKTKKSNRIIILDRITLECLKKWRSEQKKFLFKLGFTQPSRIFTNDSN 303 Query: 267 -----TQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA- 319 + +K KA + HG R A++ +AGA E+ G + Sbjct: 304 EFTINQSVTERYKIYQKKANLPNIGLHGFRHTHASLLYNAGADHKEVQERLGHANIKTTL 363 Query: 320 ETYTKGADRIR 330 +TYT D + Sbjct: 364 DTYTHLTDDRK 374 >gi|299141859|ref|ZP_07034994.1| mobilizable transposon protein, int protein [Prevotella oris C735] gi|298576710|gb|EFI48581.1| mobilizable transposon protein, int protein [Prevotella oris C735] Length = 418 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 41/308 (13%), Positives = 87/308 (28%), Gaps = 16/308 (5%) Query: 45 PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR 104 Y +A S + + + + +V+ + ++E + Sbjct: 104 REYDNASLYSDTETAQAEQKERLQQNFIKYFDK-VADKRHRNSSVSIQTNWERVHVLLKM 162 Query: 105 KSGDFDY-RKITTKHIRSGVESRKHTP-----------SSAIQFLTSMRVLFKWAVRQEY 152 +GD +I + P ++A + + + K A Y Sbjct: 163 FAGDTLLFSQIDNRLAEDFKYFLLSAPCGGSKKGTISRNTASTYFSIFKAALKQAFIDGY 222 Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212 + I+ ++ + + T +++ + + E + A F +GLR D + Sbjct: 223 LTIDLSAKIKGIQEQESRREYLTLDELNKLANTPCERDVLKRAALFSALTGLRHCDIQKL 282 Query: 213 GVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272 + K T + + N + S Sbjct: 283 KWNEIAIEGNQAKLLFTQKKTKGVEYMPISEQAFKLCGEPRQPEQLVFEGLPNPSWISRS 342 Query: 273 FKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 +A KAG+ + S H R AT+ G + + G V + Y K D + Sbjct: 343 LRAWIEKAGIQKHLSFHCFRHTFATLQLANGTDIYTVSKMLGHTNVKTTQVYAKVVDEKK 402 Query: 331 -LGIKNSR 337 + Sbjct: 403 NKAANAIQ 410 >gi|304404723|ref|ZP_07386384.1| integrase family protein [Paenibacillus curdlanolyticus YK9] gi|304346530|gb|EFM12363.1| integrase family protein [Paenibacillus curdlanolyticus YK9] Length = 307 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 36/291 (12%), Positives = 85/291 (29%), Gaps = 26/291 (8%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS---SAI 134 ++ + +++ + + + R I + S + + + + Sbjct: 13 FKIWMKDRGYSKDTQQGYLNDIQLLCRSLRGKPLPSIRKIDVMSHLTDARERGAGDGARN 72 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSV-ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193 + L+++R+ FK + E + NP V + K + + + R Sbjct: 73 RALSAIRLFFKVMIEFERMEHNPAADVSKSKVEKNRLPLYLEESYLGDLLRSVEGNFRVR 132 Query: 194 LAFEFLL--YSGLRCSDSCRAGVQH---------LQNNIFSIKTQKTGTIITVELPDGFM 242 L Y GLR S+ + +Q + + I L Sbjct: 133 DIAMLALMSYCGLRVSEVSQLNLQDFDPEAGQLSILGKGRKWRYIPLQPSIITLLKQCLQ 192 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK--------AGVNKSAHGVRKFSA 294 + + + FF++ ++++ + + A SAH +R A Sbjct: 193 ERIPPKRKNEHPFFVSRLGRRISRRTVQFIVERTFEQFKQQHEHMAERKFSAHKLRHSFA 252 Query: 295 TISADAG-ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 T L G + + YT D+ + + + + Sbjct: 253 TNLLSTDKVDLRTLQELLGHADISTTQIYTHITDKKK--KQAMAAVQPNLP 301 >gi|255037676|ref|YP_003088297.1| integrase family protein [Dyadobacter fermentans DSM 18053] gi|254950432|gb|ACT95132.1| integrase family protein [Dyadobacter fermentans DSM 18053] Length = 290 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 36/276 (13%), Positives = 89/276 (32%), Gaps = 26/276 (9%) Query: 78 YRKSAHWGSL-AVNSRISFESYFDQIIRKS---------GDFDYRKITTKHIRSGVESRK 127 + + + + ++ S+++ +Q + + + + E Sbjct: 5 FLEFLQFEKRASAHTIKSYQTDLEQFQKYLLFQYECNEPETAKAPMLRSWVVSMMEEGLN 64 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-----RPWTKEDMQQF 182 PSS + + ++R + + +++++ +P + K + + + + Sbjct: 65 --PSSINRKIAALRTFYGYLRKKKHIDSDPTKILSALKTRKKLPAFVEEKSMELLFEEGV 122 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGF 241 S G + R+ E L SG+R S+ ++ L +I+ V + Sbjct: 123 FSEDFSGLRDRVIMELLYGSGIRLSELVELELKDLNLPARTIRVFGKRAKERIVPVSTSL 182 Query: 242 MKLLAMTPIGKETFFINNDKQ-KMNATQFSIWFKAKATKAGV-------NKSAHGVRKFS 293 +LL + + + F + K + KS H +R Sbjct: 183 AQLLHKYTEQRAPEEDTDVLLLTDSNKAIYPVFVQRKVKQYLSAVTTLSQKSPHVLRHTY 242 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + GA + + G + + YT + Sbjct: 243 ATHLLNRGADLNAIKELLGHANLAATQIYTHNSIEK 278 >gi|326571339|gb|EGE21356.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis BC8] Length = 331 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 35/278 (12%), Positives = 88/278 (31%), Gaps = 31/278 (11%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYR----KITTKHIRSGVESRK 127 + + + ++ ++++ Q G +T + +E K Sbjct: 30 WCDELRLQNYSKHTITTYQTALIQFFNFLESDNYLGGDPLACRRQDLTR-FFSTRLEEEK 88 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI--------RPWTKEDM 179 P SA L+++R+ +++ ++Q +A+NP + + + + Sbjct: 89 IKPISAKLSLSAIRIFYQFLIKQGVIAVNPTTGYKIKSAPRKLPTVADELLIKQLLDQKT 148 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----------QKT 229 + + + + FE + SGLR S+ + + + ++ Sbjct: 149 PEDTAKAYLWIRDKAMFELMYSSGLRLSELAGLNMGDVNFDTGIVRVLGKGNKTRQVPVG 208 Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AH 287 + + L K F +++ + K AT AG+ + H Sbjct: 209 KKAMIALQDYLPHRNLWQKKNCKALFISERHGTRLSTRAIQLRLKVCATMAGIELNMYPH 268 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 +R A+ + + G + + + YT Sbjct: 269 LLRHCFASHVLSSSGDLRAIQEMLGHQNISTTQIYTHV 306 >gi|260893051|ref|YP_003239148.1| integrase family protein [Ammonifex degensii KC4] gi|260865192|gb|ACX52298.1| integrase family protein [Ammonifex degensii KC4] Length = 311 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 43/277 (15%), Positives = 85/277 (30%), Gaps = 18/277 (6%) Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF-DYRKITTKHIRSGVESR 126 +L L+ E+ + LA + ++ +R G Y ++ IR +R Sbjct: 8 RLSLPDLLEEFLLARKADGLAELTLSTYRKIVTAFVRFCGPLVGYEELRRAAIRYF--AR 65 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE----RPKRKTEGIRPWTKEDMQQF 182 +P L ++ F W VR+ ++ NP + R K + Q Sbjct: 66 PSSPGYHNIKLRHLKAFFNWCVREGHLPANPLEGIRKAKEDLSRVRHAPLEALKRLLAQP 125 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-----------T 231 G + L +G R + R L + + + Sbjct: 126 DRKTYAGLRDYCLLLTQLDTGARPGELLRVTPSDLNLAARELHIRPEVAKTRVGRTLVVS 185 Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRK 291 +T + ++ + F + + MN T ++ + +AGV + +G+R Sbjct: 186 PLTAQALARLLRARPSWWGEEVPLFASETGKPMNPTYWAERVREYCQRAGVKVTPYGLRH 245 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 A A L G + + Y + Sbjct: 246 TFALEFLKASNDPFALQRVLGHRDLSMTRRYVRYLQE 282 >gi|85858465|ref|YP_460667.1| integrase family protein [Syntrophus aciditrophicus SB] gi|85721556|gb|ABC76499.1| integrase family protein [Syntrophus aciditrophicus SB] Length = 421 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 49/317 (15%), Positives = 99/317 (31%), Gaps = 23/317 (7%) Query: 41 STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF- 99 T A K+ + K+ T +Y K ++ +A E + Sbjct: 89 KTISDMREKARKQEEAKQAEVEKKEKESITFG----KYFKDTYFPDMAHKKSKDVEQFIY 144 Query: 100 -DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL---TSMRVLFKWAVRQEYVAI 155 I G +T H++ ++ + + + + ++ A + + V Sbjct: 145 DKWICPLIGKLRINDLTDFHLKKIKKNMEDSGKAVRTIHYAFAIVSQVWNRARKDKIVQR 204 Query: 156 NP-CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAG 213 + V+ P+ + R + ++ ++ S+ LY+G R + Sbjct: 205 DCPTRDVKLPRIDNQKKRFLSPQEANDLLAYLKNKSRQLYELAYLSLYTGARFGELAGLT 264 Query: 214 VQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271 + + + K+G TV + +G L P GK I D++ S Sbjct: 265 WRRINLKDGSIIFRNTKSGKDRTVFMTEGVKALFEAMPEGKADDLIFPDRKGKRLFSVSA 324 Query: 272 WFKAKATKAGVNK---------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 F G+NK + H +R A+ + G + G Y Sbjct: 325 TFDRAIADLGLNKGVVDPRDKITFHSLRHTHASWLVNNGTNLFLVKEILGHADFKMTTRY 384 Query: 323 TK-GADRIRLGIKNSRR 338 + AD IR + + Sbjct: 385 SHPAADSIRQAMVGLEK 401 >gi|85059151|ref|YP_454853.1| phage integrase [Sodalis glossinidius str. 'morsitans'] gi|84779671|dbj|BAE74448.1| phage integrase [Sodalis glossinidius str. 'morsitans'] Length = 338 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 57/338 (16%), Positives = 108/338 (31%), Gaps = 39/338 (11%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE--STFIPAYMSALTGSTPKREYINSP 64 LPP V + GK Y F G I L Y A ++ Sbjct: 13 LPPRVYR-----GKTQYEFHPASGGSISLCPLDSLIPVVWAKYEQANNYRNERKN----- 62 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 L+ LI+++ SA + +LA ++ ++ +++ G + +HIR ++ Sbjct: 63 ------LEHLINQFFLSADFMALAAETQKDYKRNSTRLLPVFGKMHPDNVKPQHIRKYMD 116 Query: 125 SRKHTPSS-AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 R + A + +++W + NPC V + E R D + Sbjct: 117 KRGTKSKTQANHEKRFLSRVYRWGYERGITKGNPCSGVR---QFKEEARDRYITDAEYEA 173 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 + + R+A E R SD L ++ I KTG + K Sbjct: 174 LYSVAPATVRIAMEIAYLCCARQSDVLSLTKSQLLDDGIFICQGKTGKKQIKAWTERLKK 233 Query: 244 LLA-------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-------NKSAHGV 289 ++ + + + F+ + KA V + + H + Sbjct: 234 VIDLADSLPASQGVNSIYVLHQPNGNRYTRDGFNSSWAKARAKASVLHPELTFDFTFHDL 293 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 + + + E A G K++ Q Y + + Sbjct: 294 KAKGISDL---EGSLSEKQAISGHKSIGQTARYNRKTE 328 >gi|296454352|ref|YP_003661495.1| phage integrase family protein [Bifidobacterium longum subsp. longum JDM301] gi|296183783|gb|ADH00665.1| phage integrase family protein [Bifidobacterium longum subsp. longum JDM301] Length = 353 Score = 109 bits (273), Expect = 6e-22, Method: Composition-based stats. Identities = 52/325 (16%), Positives = 90/325 (27%), Gaps = 78/325 (24%) Query: 78 YRKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGV--ESRKHTPSS 132 Y KS L+ N+ ++ + + G D +IT +RS + ESR H SS Sbjct: 16 YLKSN--RGLSANTLKAYRADLTACLHLFELRGVTDLNEITLDDLRSWMAVESRDHARSS 73 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK--------- 183 + ++R F WA +P ++ P + T+ +Q Sbjct: 74 MARKTVAVRGFFAWAYEHGVTTTDPAATLMTPSIPSTLPAVLTESQAEQLLDVAEHAVAT 133 Query: 184 -------------------------------------------SFWSEGSQPRLAFEFLL 200 +E + E L Sbjct: 134 NQYKDDGGAAAASGSGSGKAADKSADIVNRSEAPARADKRDNARATAESQRNAAILELLY 193 Query: 201 YSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259 +G+R ++ + + N T K V + L Sbjct: 194 ATGIRVAELVSMDIADIDFSNRTIKVTGKGNKQRVVPFGLPAQRALETWLEQGRPVLART 253 Query: 260 DKQKMNATQFSIWF-----------------KAKATKAGVN-KSAHGVRKFSATISADAG 301 + + + F A +AGV S H +R +AT D G Sbjct: 254 ATDAVKSRAANALFLGARGGRIDQRIARDIVHRAAREAGVPDISPHALRHSAATHMLDGG 313 Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326 A E+ G ++ + YT + Sbjct: 314 ADLREVQEMLGHSSLKTTQRYTHVS 338 >gi|326570632|gb|EGE20668.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis BC7] gi|326574796|gb|EGE24730.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis O35E] Length = 330 Score = 109 bits (273), Expect = 6e-22, Method: Composition-based stats. Identities = 35/278 (12%), Positives = 88/278 (31%), Gaps = 31/278 (11%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYR----KITTKHIRSGVESRK 127 + + + ++ ++++ Q G +T + +E K Sbjct: 30 WCDELRLQNYSKHTITTYQTALIQFFNFLESDNYLGGDPLACRRQDLTR-FFSTRLEEEK 88 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI--------RPWTKEDM 179 P SA L+++R+ +++ ++Q +A+NP + + + + Sbjct: 89 IKPISAKLSLSAIRIFYQFLIKQGVIAVNPTTGYKIKSAPRKLPTVADELLIKQLLDQKT 148 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----------QKT 229 + + + + FE + SGLR S+ + + + ++ Sbjct: 149 PEDTAKAYLWIRDKAMFELMYSSGLRLSELAGLNMGDVNFDTGIVRVLGKGNKTRQVPVG 208 Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AH 287 + + L K F +++ + K AT AG+ + H Sbjct: 209 KKAMIALQDYLPHRNLWQKKNCKALFISERHGTRLSTRAIQLRLKVCATMAGIELNMYPH 268 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 +R A+ + + G + + + YT Sbjct: 269 LLRHCFASHVLSSSGDLRAIQEMLGHQNISTTQIYTHV 306 >gi|315173382|gb|EFU17399.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecalis TX1346] Length = 387 Score = 109 bits (273), Expect = 6e-22, Method: Composition-based stats. Identities = 52/371 (14%), Positives = 109/371 (29%), Gaps = 51/371 (13%) Query: 11 VTKERTRHGKIIYYFRKGHG-----RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65 + + + + G+ +YF+ G ++ + AL + E + Sbjct: 4 IRQYQKKSGEKAWYFKTYLGIDPLTKKKKYTTKRGFKTQKEAKIALARLEMEIERNGIKQ 63 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 T + + + ++ + + + I G + KI T + + V + Sbjct: 64 SSSITFQEIAVLWLENYKNTVKDSSYSRTNIIFNKHIFPHFGKIEIAKINTAYCQKIVNN 123 Query: 126 RKHTPSSAIQ--FLTSMRVLFKWAVRQEYVAINPC--------------LSVERPKRKTE 169 +S FL M +FK+A+ A NP + + Sbjct: 124 WHTNGTSKQYPLFLNYMNKVFKFAINMGVTAENPTTNVIIPKNKETANPKDTKIKFYNKD 183 Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------- 218 ++ + + QQ + + F L +SG R + L Sbjct: 184 QLQKFLECIHQQPQENNYITIRDYTLFRLLSFSGCRIGELLALTWDDLNLETGELQINKT 243 Query: 219 -----NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA------- 266 S + + + L ++ L ++ F + + Sbjct: 244 VTKSDKYYVSSTPKTKKSNRIIILDRITLECLKKWRSEQKKFLFKLGFTQPSRIFTNDSN 303 Query: 267 -----TQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA- 319 + +K KA + HG R A++ +AGA E+ G + Sbjct: 304 EFTINQSVTERYKIYQKKANLPNIGLHGFRHTHASLLYNAGADHKEVQERLGHANIKTTL 363 Query: 320 ETYTKGADRIR 330 +TYT D + Sbjct: 364 DTYTHLTDDRK 374 >gi|154150265|ref|YP_001403883.1| phage integrase family protein [Candidatus Methanoregula boonei 6A8] gi|153998817|gb|ABS55240.1| phage integrase family protein [Methanoregula boonei 6A8] Length = 306 Score = 109 bits (273), Expect = 6e-22, Method: Composition-based stats. Identities = 47/301 (15%), Positives = 98/301 (32%), Gaps = 35/301 (11%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQI--------------------------IR 104 + YR + + + S+E + Sbjct: 6 FSDWLKSYRNYLRMRNYSSRTLDSYEQVIRHFGYYVWLRRHTEVTKLVFFWKDLENARLD 65 Query: 105 KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164 S D IT + R + P + + ++++ +++ Q V NP +ERP Sbjct: 66 TSVDVPPSMIT-DFLSFVSTMRTYKPKTFHRIISTLSSFYRFLSVQGAVVANPLAGIERP 124 Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 + K + ++ K + E + +L + +G+R S+ C V+ + + +I Sbjct: 125 RIKQQEVKYL-KHNQVLRLIDSIEDPRDKLIVRTIYSTGVRVSELCNMNVEDIDFDEHTI 183 Query: 225 KTQKT-GTIITVELPDGFMKLLAMTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAG 281 + + I V + D + + + FI + ++ FK A AG Sbjct: 184 RIRGKGDKIRIVFVDDETLAGIQKFVGNRIAGPLFIGQQGKHISPRAIQHIFKHYAP-AG 242 Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKNSRRIS 340 + + H +R A+ + G ++ E Y D R + +S Sbjct: 243 I--TPHKIRHSYASELYRRSKNLRVVQENLGHTSIKTTEVYLHTDIDERRQVYQQFFPLS 300 Query: 341 S 341 S Sbjct: 301 S 301 >gi|237816384|ref|ZP_04595377.1| tyrosine recombinase XerD [Brucella abortus str. 2308 A] gi|260546138|ref|ZP_05821878.1| tyrosine recombinase xerD [Brucella abortus NCTC 8038] gi|260755704|ref|ZP_05868052.1| integrase/recombinase xerD [Brucella abortus bv. 6 str. 870] gi|260758929|ref|ZP_05871277.1| integrase/recombinase xerD [Brucella abortus bv. 4 str. 292] gi|260884731|ref|ZP_05896345.1| tyrosine recombinase xerD [Brucella abortus bv. 9 str. C68] gi|297247261|ref|ZP_06930979.1| tyrosine recombinase XerD [Brucella abortus bv. 5 str. B3196] gi|88952695|sp|Q2YR40|XERD_BRUA2 RecName: Full=Tyrosine recombinase xerD gi|90140493|sp|P0C122|XERD_BRUAB RecName: Full=Tyrosine recombinase xerD gi|237788451|gb|EEP62666.1| tyrosine recombinase XerD [Brucella abortus str. 2308 A] gi|260096245|gb|EEW80121.1| tyrosine recombinase xerD [Brucella abortus NCTC 8038] gi|260669247|gb|EEX56187.1| integrase/recombinase xerD [Brucella abortus bv. 4 str. 292] gi|260675812|gb|EEX62633.1| integrase/recombinase xerD [Brucella abortus bv. 6 str. 870] gi|260874259|gb|EEX81328.1| tyrosine recombinase xerD [Brucella abortus bv. 9 str. C68] gi|297174430|gb|EFH33777.1| tyrosine recombinase XerD [Brucella abortus bv. 5 str. B3196] Length = 309 Score = 109 bits (273), Expect = 6e-22, Method: Composition-based stats. Identities = 37/289 (12%), Positives = 82/289 (28%), Gaps = 33/289 (11%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR---K 127 I + + A N+ S+ + + + + T HIR +++ Sbjct: 8 AIENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKGVNLAEAETGHIRMTLDTMAAQG 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185 P+S + L+++R F++ + + +P + PK++ + + E++ + Sbjct: 68 FAPTSQARRLSALRQFFRFLYSEGFRQDDPTGILYAPKKQKPLPKIMSVENVGKLLDRAA 127 Query: 186 -----------WSEGSQPRLAFEFLLYSGLRCSDSC-------RAGVQHLQNNIFSIKTQ 227 + + E L +GLR S+ R + L K + Sbjct: 128 LEANEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKGSKDR 187 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-- 285 L + G + + F + Sbjct: 188 MVPLSRKARDALQKFLTLRDSLPGSDDNPWLFPAFSESGHLARQVFARELKGLAARAGLA 247 Query: 286 -----AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 H +R A+ GA + G + + YT + Sbjct: 248 ASSASPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEER 296 >gi|291526988|emb|CBK92574.1| Site-specific recombinase XerD [Eubacterium rectale M104/1] Length = 280 Score = 109 bits (273), Expect = 6e-22, Method: Composition-based stats. Identities = 35/261 (13%), Positives = 87/261 (33%), Gaps = 18/261 (6%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMR 141 +L ++ ++ + + + D +TT + + +K +P + + + +R Sbjct: 16 RNLKDSTIHAYCTSVAHFLNHTA-KDIDALTTDDVDIFLTEKKLSGISPETYNHYHSGIR 74 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201 +K +++ + + + TK ++ + + + Sbjct: 75 FFYKKILKKNWDDDDIPRMKRD----RKLPTVLTKTEISAILDAT-PNLKHKAMIATMYS 129 Query: 202 SGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259 GLR S+ + I+ K+ + L D +++L Sbjct: 130 GGLRVSEVTHLHYDDISRTKKNIHIRDGKSRSDRYTLLADRTLEILTEYWFQCGRPRGIL 189 Query: 260 DKQKMNATQFS-----IWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYG 312 + +F+ A +AG+ + S H +R A+ ++G + A G Sbjct: 190 FPSSWTGDYLTKDSVIQFFRESAKRAGIQKHVSTHCLRHSFASHLFESGCDVKYIQALLG 249 Query: 313 WKTVDQAETYTKGADRIRLGI 333 + E Y +++ LGI Sbjct: 250 HRDPKSTEVYLHVSNKTLLGI 270 >gi|260753463|ref|YP_003226356.1| site-specific tyrosine recombinase XerC [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552826|gb|ACV75772.1| integrase family protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 307 Score = 109 bits (273), Expect = 6e-22, Method: Composition-based stats. Identities = 42/280 (15%), Positives = 88/280 (31%), Gaps = 23/280 (8%) Query: 74 LISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITT--------KHIRSGVE 124 L +++ + + + +S ++ + + I G+ I IR+ + Sbjct: 16 LATQWEQYLQFSLRRSPHSIRAYMATVHRFISFLGNHRGDLIDKNTLQKTDIAEIRAFLA 75 Query: 125 SRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQ 180 R+ + SS + ++ +R ++ AI + P+ + ++ Sbjct: 76 YRRQSGLANSSVAREISGIRAFLRFIGLDPIPAIKGARVKKGIPRPLSPEDAVALAKEAS 135 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 + S ++ L SGLR S++ + L K I V L + Sbjct: 136 EEASEQWIEARDLALLLLLYGSGLRISEALNLTCEILPLQTTLRVVGKRSKIRIVPLLEK 195 Query: 241 FMKLLAMTPIGKETFFINNDKQKM-------NATQFSIWFKAKATKAGVN--KSAHGVRK 291 + + F + +A + GV+ + H +R Sbjct: 196 VKRAMETYVRLCPYAFSGSQPFFRGAKGGVLSADVLRRTVRKARYHLGVDNKATPHALRH 255 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 A+ GA L G ++ + YT D RL Sbjct: 256 SFASHLLGRGADLRSLQELLGHASLSSTQIYT-AVDAARL 294 >gi|153807716|ref|ZP_01960384.1| hypothetical protein BACCAC_01998 [Bacteroides caccae ATCC 43185] gi|160886162|ref|ZP_02067165.1| hypothetical protein BACOVA_04169 [Bacteroides ovatus ATCC 8483] gi|160889100|ref|ZP_02070103.1| hypothetical protein BACUNI_01521 [Bacteroides uniformis ATCC 8492] gi|149129325|gb|EDM20539.1| hypothetical protein BACCAC_01998 [Bacteroides caccae ATCC 43185] gi|156108047|gb|EDO09792.1| hypothetical protein BACOVA_04169 [Bacteroides ovatus ATCC 8483] gi|156861567|gb|EDO54998.1| hypothetical protein BACUNI_01521 [Bacteroides uniformis ATCC 8492] Length = 327 Score = 109 bits (273), Expect = 6e-22, Method: Composition-based stats. Identities = 41/264 (15%), Positives = 87/264 (32%), Gaps = 14/264 (5%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 LI + + + S + S + IRK + + R ITT +R+ + + T Sbjct: 50 SELIDSFLSAKRVEGCSDKSMHYYRSTLNNAIRKI-EKNIRHITTDDLRNYLNDYQQTSG 108 Query: 132 ----SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + + F W ++Y+ +P + + K ++ E ++Q + Sbjct: 109 ATKVTVDNIRRILSSFFSWLEDEDYIVKSPVRRIHKVKVGKTVKETYSDEALEQMRDHC- 167 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLA 246 EG + + L +G+R + + + I T K V L Sbjct: 168 EGIRDLALIDLLASTGMRVGELVKLNRNDIDFENRECIVTGKGDKQRRVYFDARTKIHLQ 227 Query: 247 MTPIGKETFFINND------KQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299 + ++ + I + + + K H R+ AT++ D Sbjct: 228 RYLAERIDDNPALFVSLLAPYDRLQISGVEIRLRRLGRELNIPKVHPHKFRRTLATMAID 287 Query: 300 AGATAHELMATYGWKTVDQAETYT 323 G ++ G +++D Y Sbjct: 288 KGMPIEQVQHLLGHQSLDTTLQYA 311 >gi|32471281|ref|NP_864274.1| integrase [Rhodopirellula baltica SH 1] gi|32396983|emb|CAD71953.1| integrase [Rhodopirellula baltica SH 1] Length = 348 Score = 109 bits (273), Expect = 6e-22, Method: Composition-based stats. Identities = 39/290 (13%), Positives = 79/290 (27%), Gaps = 31/290 (10%) Query: 80 KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQ 135 + H A + + Q+ +G ++T +H+R R S Sbjct: 61 EDLHLTGKAKRTHDGYIRAVRQLSDFAGCSP-DQVTEQHVRQFFLHLKNDRNFAYGSLRV 119 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195 + ++ F ++++ I + T T E + + + + + Sbjct: 120 AFSGIKFFFTHTCKRDWEIIKMLK----LQNITTLPEVLTIEQVHE-LIGSATTQRMFVY 174 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLLAMTPIGKE 253 F + GLR +++ V + + + V LP ++LL Sbjct: 175 FWTVYSLGLRLNEALHLQVSDIDAERGWVHVHRGKGAKDRYVPLPTTTVRLLRNYWASHR 234 Query: 254 TFFINND----------------KQKMNATQFSIWFKAKATKA--GVNKSAHGVRKFSAT 295 M+ T K G S H +R AT Sbjct: 235 HPSFLFPADGRKHDLAKDGVSEATTPMSETAVQGAMKQITKNLRFGKKVSIHTLRHSYAT 294 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRL-GIKNSRRISSVVD 344 +AG + G ++ Y D + R+ + Sbjct: 295 HLLEAGVGLKVIQKYLGHSSLQTTMVYLHLTDTAEANAREEIERLFGSLP 344 >gi|260891942|ref|YP_003238039.1| integrase family protein [Ammonifex degensii KC4] gi|260864083|gb|ACX51189.1| integrase family protein [Ammonifex degensii KC4] Length = 383 Score = 109 bits (273), Expect = 6e-22, Method: Composition-based stats. Identities = 53/365 (14%), Positives = 117/365 (32%), Gaps = 58/365 (15%) Query: 15 RTRHGKIIYYFR----------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64 R R GK Y+ G ++ L A ++ + YI+ Sbjct: 6 RKRVGKRGVYYDVVFDIGRDPVTGKRKQKWLRGFRTKKEAEAALAQAIAEVERGTYIDPE 65 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGV 123 + TL + E+ + L++ + + + +I G RK++ H+ + Sbjct: 66 K---VTLAEYLKEWHAARKHK-LSLRTWERYGQLIEHWLIPHLGGIPLRKLSPVHLEKFI 121 Query: 124 ESR----------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 + K +P++ + + AV++ + NP +V++P++ + Sbjct: 122 SAMLEADRLDGKGKISPTTVRHAALVLNKALRDAVKKRLIPYNPMEAVDKPRKARKEPPA 181 Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-------- 225 KE + +EG+ +Y+G R + + + I Sbjct: 182 L-KEGELRRLMSAAEGTYLYAPITLAVYTGARLGEILGLRWRDVDFEAGCIFILQALKRN 240 Query: 226 ---------TQKTGTIITVELPDGFMKLLAMTPIGKETF--------------FINNDKQ 262 + + +E+ + L + + D Sbjct: 241 LKGELYFDEPKTPRSRRRIEIGPACLAALRKQKKLQAEWKLKAGSAWQETGLVCTREDGS 300 Query: 263 KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ET 321 ++ FS F+ A+K G++ + H +R AT+ AG + G +V + Sbjct: 301 PIDPHAFSSAFRKLASKLGIDANFHALRHTHATMLLKAGVHLKIVSERLGHASVAITGDL 360 Query: 322 YTKGA 326 Y+ Sbjct: 361 YSHVL 365 >gi|209965542|ref|YP_002298457.1| tyrosine recombinase XerC, putative [Rhodospirillum centenum SW] gi|259710436|sp|B6IPE2|XERC_RHOCS RecName: Full=Tyrosine recombinase xerC gi|209959008|gb|ACI99644.1| tyrosine recombinase XerC, putative [Rhodospirillum centenum SW] Length = 341 Score = 109 bits (273), Expect = 6e-22, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 82/289 (28%), Gaps = 30/289 (10%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVES 125 + + + + ++ S+ + + + + + + Sbjct: 17 AEALERWGRWLEHERGASTHTLRSYRADLAGFLAFVAEHRGRPPGLNDLGALDLGAFRAW 76 Query: 126 RKHTPS------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + + + ++ +R F+WA R + + PK + RP +D Sbjct: 77 LAARAADGAGAATRSRGVSGVRSFFRWADRSGLLHNPAIALLTAPKAQRPLPRPLAADDA 136 Query: 180 QQFKS-------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGT 231 G + R F L GLR S++ L S++ K G Sbjct: 137 ALLLEEAAAVPEAPWIGLRDRALFTLLYGCGLRISEAIGLNRSDLPAGAASVRVLGKGGK 196 Query: 232 IITVELPDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKAGVNK 284 V + + +A F+ +++ + G+ Sbjct: 197 QRDVPVLPAVREAVAAYLAAVPWGGGRAAPLFVGAKGDRLSPDVARRQMRHLRALLGLPD 256 Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 + H +R AT GA + G ++ + YT D L Sbjct: 257 STTPHALRHSFATHLLGGGADLRAIQDLLGHASLSTTQRYT-DVDAEHL 304 >gi|146337735|ref|YP_001202783.1| site-specific tyrosine recombinase [Bradyrhizobium sp. ORS278] gi|146190541|emb|CAL74543.1| site-specific tyrosine recombinase [Bradyrhizobium sp. ORS278] Length = 308 Score = 109 bits (273), Expect = 6e-22, Method: Composition-based stats. Identities = 41/278 (14%), Positives = 82/278 (29%), Gaps = 38/278 (13%) Query: 90 NSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144 N+ ++ + G + + ++ R SS + L++MR LF Sbjct: 17 NTLDAYRRDLIDLSEFLTRKGNGFAAADTQALRDYLANLDLRGFKSSSVARRLSAMRHLF 76 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE--------------GS 190 ++ + + + +P + PKR + + D+ + + E Sbjct: 77 RFLLSERIRSDDPAAILSGPKRGRALPKVLSIGDVDRMLTKAKELSEVADASLSQRLRAL 136 Query: 191 QPRLAFEFLLYSGLRCSDSCR-AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249 + E L +GLR S+ + + K V L + +A Sbjct: 137 RLYCLLEVLYATGLRVSELVALPRTAARNDARMIVVRGKGNKERLVPLNQASRQAMADYL 196 Query: 250 IG---------------KETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRK 291 K F + + F+ K A +G+ S H +R Sbjct: 197 AMLDRQKPHAKASATFGKWLFPSFGESGHLTRQHFARDLKELAAASGLPARLVSPHVLRH 256 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 A+ GA + G + + YT + Sbjct: 257 AFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEER 294 >gi|15900773|ref|NP_345377.1| phage integrase family integrase/recombinase [Streptococcus pneumoniae TIGR4] gi|111656825|ref|ZP_01407676.1| hypothetical protein SpneT_02001908 [Streptococcus pneumoniae TIGR4] gi|148988317|ref|ZP_01819764.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP6-BS73] gi|148993703|ref|ZP_01823150.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP9-BS68] gi|149002427|ref|ZP_01827361.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP14-BS69] gi|168490325|ref|ZP_02714524.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae SP195] gi|182683810|ref|YP_001835557.1| phage integrase family integrase/recombinase [Streptococcus pneumoniae CGSP14] gi|225858687|ref|YP_002740197.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae 70585] gi|225861217|ref|YP_002742726.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae Taiwan19F-14] gi|237650544|ref|ZP_04524796.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae CCRI 1974] gi|237822639|ref|ZP_04598484.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae CCRI 1974M2] gi|298229452|ref|ZP_06963133.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254243|ref|ZP_06977829.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503103|ref|YP_003725043.1| phage integrase/recombinase [Streptococcus pneumoniae TCH8431/19A] gi|303262774|ref|ZP_07348712.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP14-BS292] gi|303267703|ref|ZP_07353526.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae BS457] gi|303270062|ref|ZP_07355780.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae BS458] gi|307127558|ref|YP_003879589.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae 670-6B] gi|14972364|gb|AAK75017.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae TIGR4] gi|147759364|gb|EDK66356.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP14-BS69] gi|147925998|gb|EDK77072.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP6-BS73] gi|147927783|gb|EDK78806.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP9-BS68] gi|182629144|gb|ACB90092.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae CGSP14] gi|183571337|gb|EDT91865.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae SP195] gi|225720290|gb|ACO16144.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae 70585] gi|225727056|gb|ACO22907.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae Taiwan19F-14] gi|298238698|gb|ADI69829.1| phage integrase/recombinase [Streptococcus pneumoniae TCH8431/19A] gi|301794021|emb|CBW36419.1| putative integrase/recombinase [Streptococcus pneumoniae INV104] gi|301801716|emb|CBW34422.1| putative integrase/recombinase [Streptococcus pneumoniae INV200] gi|302636096|gb|EFL66593.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP14-BS292] gi|302640408|gb|EFL70837.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae BS458] gi|302642766|gb|EFL73090.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae BS457] gi|306484620|gb|ADM91489.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae 670-6B] gi|332073220|gb|EGI83699.1| phage integrase, N-terminal SAM-like domain protein [Streptococcus pneumoniae GA17570] gi|332076174|gb|EGI86640.1| phage integrase, N-terminal SAM-like domain protein [Streptococcus pneumoniae GA41301] gi|332076339|gb|EGI86804.1| phage integrase, N-terminal SAM-like domain protein [Streptococcus pneumoniae GA17545] Length = 321 Score = 109 bits (273), Expect = 6e-22, Method: Composition-based stats. Identities = 32/262 (12%), Positives = 79/262 (30%), Gaps = 14/262 (5%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESRKHT 129 L+ + + + + ++ + + ++TT +R + + + Sbjct: 46 LLQLFITAKQVEGCSSKTIRYYQRTIENLFNAI-KESVTQLTTDDLRSYLANYQSEKDCS 104 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 ++ + F W ++EY+ NP +++ K + +T E ++ + E Sbjct: 105 KANLDNIRRILSSFFAWLEQEEYIIKNPIRRIKKIKTEQNVKETYTDEHLEIMRD-NCEN 163 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT 248 + + L +G+R + + + V L Sbjct: 164 LRDLAIIDLLASTGMRVGELVQLNRSDIDFENRECVVFGKGKKERPVYFDARTKIHLRNY 223 Query: 249 PIGKETFFINNDK------QKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAG 301 ++ Q++ I + K G+ H R+ AT + D G Sbjct: 224 LNDRKDSHPALFVTLVGKVQRLGIAGVEIRLRKLGDKLGIQKVHPHKFRRTLATKAIDKG 283 Query: 302 ATAHELMATYGWKTVDQAETYT 323 ++ G +D Y Sbjct: 284 MPIEQVQKLLGHSKIDTTLAYA 305 >gi|323475083|gb|ADX85689.1| XerC/D integrase-recombinase protein [Sulfolobus islandicus REY15A] gi|323477815|gb|ADX83053.1| XerC/D integrase-recombinase protein [Sulfolobus islandicus HVE10/4] Length = 291 Score = 109 bits (273), Expect = 6e-22, Method: Composition-based stats. Identities = 45/272 (16%), Positives = 92/272 (33%), Gaps = 30/272 (11%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV-------- 123 L + + + + + + + + D RK+T++ + + Sbjct: 12 GDLYNAFINALVLAGAGNGTIKLYSTAVKDFLDFI-NKDPRKVTSEDLNKWISNLLNREG 70 Query: 124 -------ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 E R+ + ++ ++R KW N + PK + + ++ + Sbjct: 71 KVKGDEVEKRRAKSVTIRYYIIAVRRFLKWL--------NVSVKPPIPKVRRKEVKALDE 122 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIIT 234 +Q+ + + ++ +L LL +GLR ++ V+ + NN+ ++ K G Sbjct: 123 SQIQKVLN-MCKRTKDKLIIRLLLDTGLRANELLSVLVKDVDLENNMIRVRNTKNGEERV 181 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSA 294 V D +LL GK+ D K K + H +R A Sbjct: 182 VFFTDETKQLLRKYMKGKKLDEKLFDI---TYDALYRKLKRLGNKVEIELRPHILRHTFA 238 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGA 326 T+S G L G K + + YT Sbjct: 239 TLSLKRGINVITLQKLLGHKDIKTTQIYTHLV 270 >gi|256957153|ref|ZP_05561324.1| integrase [Enterococcus faecalis DS5] gi|256947649|gb|EEU64281.1| integrase [Enterococcus faecalis DS5] Length = 382 Score = 109 bits (273), Expect = 6e-22, Method: Composition-based stats. Identities = 53/385 (13%), Positives = 119/385 (30%), Gaps = 56/385 (14%) Query: 11 VTKERTRHGKIIYYFRK--------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62 + + + ++G+ +YF+ G + AL + + Sbjct: 2 IKQYKKKNGEKAWYFKTYLGTDPLTGKKKYTTKRGFRTQKEAK---IALARLEMEIQKNG 58 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122 P T + + + ++ + + + I+ G + KI+T + + Sbjct: 59 IPSSTNITFQEVAFMWLENYKNTVKESSYSRTEIIFRKHILPSFGKIEISKISTAYCQKI 118 Query: 123 VESRKHTPSSAIQ--FLTSMRVLFKWAVR-----QEYVAINPCLSVERPKRKTEGIRPWT 175 V + SS F+ M +FK+A+ Q V + + I+ +T Sbjct: 119 VNTWHSKGSSKQYPLFINYMNQVFKFAINIGVTSQNPVINVIVPKNQDIITSEKKIKFYT 178 Query: 176 KEDMQQFKSFW------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------- 218 K+ +Q F + F L +SG R + L Sbjct: 179 KDQLQIFLKSIEQSESTYITIRDYTLFRLLAFSGCRIGELLALTWDDLNIKTGELQINKT 238 Query: 219 -----NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA------- 266 + S + + T+ L + +L + ++ + + + + Sbjct: 239 IAKSDHYYVSNTPKTKKSNRTLILDAKTITILKKWKLEQKKYLLKLGYTQPSRIFTNEEN 298 Query: 267 -----TQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA- 319 + + K+ + HG R A++ AGA E+ G + Sbjct: 299 EFTINQAITDRYNIYRKKSNLPNIGLHGFRHTHASLLYYAGADHKEVQERLGHANIKTTL 358 Query: 320 ETYTKGADRIRLGIKNSRRISSVVD 344 +TYT + + K + ++S + Sbjct: 359 DTYTHLTNDGK--EKTTEKLSKYIG 381 >gi|241764927|ref|ZP_04762927.1| integrase family protein [Acidovorax delafieldii 2AN] gi|241365489|gb|EER60254.1| integrase family protein [Acidovorax delafieldii 2AN] Length = 327 Score = 109 bits (273), Expect = 6e-22, Method: Composition-based stats. Identities = 46/295 (15%), Positives = 87/295 (29%), Gaps = 40/295 (13%) Query: 77 EYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTPSS- 132 Y + A LA + + D++ R + ++ + HIR V S Sbjct: 17 RYLEHARVEKRLAARTLTLYALDLDKLARFAAAVQVPLLQLGSAHIRRFVAQMHSGGRSG 76 Query: 133 --AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 L+ R F WA RQ ++ NP V P+ + +D + + G+ Sbjct: 77 RGIALILSGWRGFFAWAGRQGLISHNPVQDVRAPRAPKPLPKALGVDDAVRLAEYDHSGA 136 Query: 191 QPRL------AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------GTI 232 P L E L GLR + ++ + Sbjct: 137 DPWLEARDAAMVELLYGCGLRVGELVGLDAAPHADSRRQGRGWVDLEAGEAHVFGKGSKR 196 Query: 233 ITVELPDGFMKLLAMTPIGKETFF-------------INNDKQKMNATQFSIWFKAKATK 279 +V + M L + F + ++ A + + ++ + Sbjct: 197 RSVPVGAAAMAALRAWLALRAAPFGGDASPRLDAALFVGRRGVRLTAQSIWLRLRQRSQQ 256 Query: 280 AGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 AG+ H +R A+ + + G + + YT+ D L Sbjct: 257 AGLTTPVHPHMLRHSFASHLLQSSGDLRAVQELLGHANITTTQVYTR-LDFQHLA 310 >gi|206895665|ref|YP_002247136.1| site-specific integrase/recombinase XerD protein [Coprothermobacter proteolyticus DSM 5265] gi|206738282|gb|ACI17360.1| site-specific integrase/recombinase XerD protein [Coprothermobacter proteolyticus DSM 5265] Length = 289 Score = 109 bits (273), Expect = 6e-22, Method: Composition-based stats. Identities = 34/255 (13%), Positives = 83/255 (32%), Gaps = 14/255 (5%) Query: 72 KWLISEYRKSAHWGSL-AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 K L+ EY + + + S+ D + I + + + + +P Sbjct: 20 KRLVEEYEQWLVLRKQASPRTVRSYLKDVDDFLAFVEQERSTDI--ELFKQFLHDKGLSP 77 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 S+ + L+++ + RQ V+ P++ + + + Sbjct: 78 STVARKLSAVSSFSAFLRRQGIALEFERPKVKIPQKLMQVP----NWNDLDQLVDEVQDH 133 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250 + RLA +L+ GLR S+ + ++ ++ + + + + + Sbjct: 134 EVRLALRMMLHCGLRASEVLELRWSDIGDDYMLVRGKGG-KQRMLPVSEAIRTDIESIKR 192 Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMAT 310 F + +K + + T+A + H +R AT + A + + Sbjct: 193 KGSYVFCDKKGKKRSRVWLW-----RKTRAFLGTHPHILRHAFATELTNY-ADIRVVQES 246 Query: 311 YGWKTVDQAETYTKG 325 G + + YT Sbjct: 247 LGHSDITTTQRYTHV 261 >gi|260892475|ref|YP_003238572.1| integrase family protein [Ammonifex degensii KC4] gi|260864616|gb|ACX51722.1| integrase family protein [Ammonifex degensii KC4] Length = 304 Score = 109 bits (272), Expect = 6e-22, Method: Composition-based stats. Identities = 46/284 (16%), Positives = 91/284 (32%), Gaps = 33/284 (11%) Query: 74 LISEYRKSAH-WGSLAVNSRISFESYF----DQIIRKSG----DFDYRKITTKHIRS--- 121 LI + ++ + ++ R G + + IT R Sbjct: 4 LIDRFIIHLQTEKGASLRTLTEYQKDLLEGLSFFARLLGVAEAELSPQSITPSLFRRFLG 63 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + R + ++ + L + R F++ R+ + +P V PKR+ R + + Sbjct: 64 YLHERSLSRNTIARKLAAWRSFFRFLCREGILNADPLKLVSAPKREKRLPRVLYPHEAEA 123 Query: 182 FKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVE 236 + + + R E L +GLR S+ + + ++ G Sbjct: 124 LVTAPKGTDPKAWRDRALLEVLYGAGLRVSEVEHLNLSDVDLERGELRVWGKGGKERIAL 183 Query: 237 LPDGFMKLLAMTPIGKETF--------------FINNDKQKMNATQFSIWFKAKATKAGV 282 L + L F+N+ ++++A + + A K GV Sbjct: 184 LHPLAVAALKDYLERGRPLLLSRRSRGEEEPALFLNHRGERLSARGIRLIVTSYAAKTGV 243 Query: 283 NK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + H R AT D GA + G K + + YT+ Sbjct: 244 KGKVTPHTFRHSFATHLLDGGADLRTVQELLGHKRLATTQIYTR 287 >gi|110597063|ref|ZP_01385352.1| Phage integrase:Phage integrase, N-terminal SAM-like [Chlorobium ferrooxidans DSM 13031] gi|110341254|gb|EAT59719.1| Phage integrase:Phage integrase, N-terminal SAM-like [Chlorobium ferrooxidans DSM 13031] Length = 336 Score = 109 bits (272), Expect = 6e-22, Method: Composition-based stats. Identities = 41/296 (13%), Positives = 82/296 (27%), Gaps = 50/296 (16%) Query: 85 GSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVE-----------SRKHTPSS 132 +L+ N+ ++ Q F + + R P S Sbjct: 31 KNLSPNTLKAYRGDLIQYFSFLLHHFRLDDLNGFALEQVKAVDVRLFMGALIERGVKPRS 90 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ----------- 181 + L S++ +++ + + + P+ T++ ++ Sbjct: 91 IARKLASVKSFYRYQQETGKITGSLFSFIATPRYPKRVPAFLTEQQTEKLFNEELSSGRA 150 Query: 182 --------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTI 232 + R E L GLR S+ L + +K T K Sbjct: 151 PFRQSEKSPIEEEFVSERDRSILELLYSCGLRVSELTGLTTDRLDLDGGYVKLTGKGRKQ 210 Query: 233 ITVELPDGFMKLLAMTPIGKETFF-----------INNDKQKMNATQFSIWFKAKATKAG 281 V + ++ L + FF K + + + K Sbjct: 211 RIVPVGGAALQALKKYFEVRRNFFRISLKGRAESINYVFVTKKGKQLYPMLVQRLTRKYL 270 Query: 282 VNKS------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330 V+ + H +R AT ++GA + G + E YT DR++ Sbjct: 271 VSVTEQKQKNPHILRHSFATHLLNSGADLTSVSEMLGHSNLSTTEIYTHVTFDRLK 326 >gi|312887689|ref|ZP_07747278.1| integrase family protein [Mucilaginibacter paludis DSM 18603] gi|311299784|gb|EFQ76864.1| integrase family protein [Mucilaginibacter paludis DSM 18603] Length = 420 Score = 109 bits (272), Expect = 6e-22, Method: Composition-based stats. Identities = 49/317 (15%), Positives = 104/317 (32%), Gaps = 34/317 (10%) Query: 45 PAYMSALTGSTPKREYINS-----PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF 99 AY A+ P + T + L + Y LA + ++ + Sbjct: 79 DAYQEAIIQQKPLTPENIRNTFLGQDEAAHTFQDLFN-YHNEYEKQVLAKGTMKNYYTTQ 137 Query: 100 DQIIRKS------GDFDYRKITTKHI-------RSGVESRKHTPSSAIQFLTSM---RVL 143 D I++ +D +++ K I R+ + P + + + + + Sbjct: 138 DYILQFLKKSKKPAGWDITQLSYKFIADFELFLRTFKKKDDPQPLNNNGVMKHLERFKKM 197 Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLL 200 AV E++ +P + + T+E++ ++ + + R F F Sbjct: 198 INMAVTIEWLDKDPFVKHKLKFTSK-ERGYLTEEELAVVETKELKTDKLIYVRDLFLFGC 256 Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKT-----QKTGTIITVELPDGFMKLLAMTPIGKETF 255 Y+GL D+ +L I QK+ + + L +++A Sbjct: 257 YTGLSYIDAINLTANNLMIGIDKEHWLLTQRQKSSKPVKLPLLPLAAQIIARHRHDPRAI 316 Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-ADAGATAHELMATYG 312 + ++ + + + K A + G++K S H R AT G + G Sbjct: 317 SNGTIFRPISNQKLNDYLKDLARECGIDKNFSFHLARHTFATTVTLANGVPIETVSKMLG 376 Query: 313 WKTVDQAETYTKGADRI 329 + + Y K +R Sbjct: 377 HTKISTTQIYAKVVERK 393 >gi|228942100|ref|ZP_04104640.1| YdcL (Lambda integrase-like, N-terminal,DNA breaking-rejoining enzyme, catalytic core) [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228981669|ref|ZP_04141964.1| YdcL (Lambda integrase-like, N-terminal,DNA breaking-rejoining enzyme, catalytic core) [Bacillus thuringiensis Bt407] gi|228777781|gb|EEM26053.1| YdcL (Lambda integrase-like, N-terminal,DNA breaking-rejoining enzyme, catalytic core) [Bacillus thuringiensis Bt407] gi|228817434|gb|EEM63519.1| YdcL (Lambda integrase-like, N-terminal,DNA breaking-rejoining enzyme, catalytic core) [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 352 Score = 109 bits (272), Expect = 6e-22, Method: Composition-based stats. Identities = 38/344 (11%), Positives = 102/344 (29%), Gaps = 41/344 (11%) Query: 11 VTKERTRHGKIIYYFR----KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 + K+ + G + R G ++++ + + + Sbjct: 2 IYKD-DKRGTYFFVVRVRQFDGTTKQVKRRGFKTKKEAREAEAKM--------LVEKESN 52 Query: 67 KPTTLKWLISEYRK--SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 T + + Y + ++N+ + + ++ ++++ G IT +H+ Sbjct: 53 SNLTFEHVADSYFNWYTQRRKQSSINTIKN--AIYNHLMKEFGKMKIDCITPRHVMDYQN 110 Query: 125 SR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 +++ +F T++ +F + ++ + NP +++++ + + + + Sbjct: 111 KMINEYSAEYLKKFHTTLSAIFNFGIKFHGLTTNPARIAGNFQKESKKRINFWEFEEFKQ 170 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDG 240 + + F L YSG R + + + +I K +T Sbjct: 171 FISVVDEPMYKAFFSTLYYSGARKGELLALTWEDINFEEKTINIHKTKYNRQVTEPKTKA 230 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNA------------------TQFSIWFKAKATKAGV 282 +++ + + A T F A V Sbjct: 231 SNRIIMLPNFVMNLLRGIKKDAALTAPVKNDYVVFGEFYDSLATTSLHKKFNNYLKIAMV 290 Query: 283 N-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 H R A+ + G + + G V TY+ Sbjct: 291 KEIVMHEFRHSHASYLINKGVSPLVVAQRLGHSDVATTLNTYSH 334 >gi|301059533|ref|ZP_07200445.1| site-specific recombinase, phage integrase family [delta proteobacterium NaphS2] gi|300446298|gb|EFK10151.1| site-specific recombinase, phage integrase family [delta proteobacterium NaphS2] Length = 340 Score = 109 bits (272), Expect = 6e-22, Method: Composition-based stats. Identities = 50/316 (15%), Positives = 101/316 (31%), Gaps = 12/316 (3%) Query: 20 KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT--LKWLISE 77 + +Y F +R + + ++P + L+ I + Sbjct: 11 RWMYKFEF-QKKRYKKEGFRTQKEALLAEAERRTQVNAPSLGLKELEEPPSDYLEETILK 69 Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA-IQF 136 Y + N+ ++ GD I I + +E R + S + Sbjct: 70 YLNYCKKRKMRTNTIRQKYFVLSNFVKSIGDKPVELIRKSDIEAYLELRIDSGKSTFNRD 129 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196 L +R +F W +E + NP +E+ E D++ K + L Sbjct: 130 LRDIRAMFNWYYGREGIFHNPANDIEKIGEDVELRYVPPFSDIKAVKLVATRDEVDFL-- 187 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251 E + Y+GLR ++ R + I + +K GT+ + +A+ Sbjct: 188 ETIFYAGLRRIEAIRLLWSRDVDFGSRTLISWTRKRKNGTLTPKPKAMTKILYMALKNRY 247 Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMAT 310 + +++ + + + K KAGV + H +R A+I + Sbjct: 248 ERRNRLDDRVFQFSVEYLNDMMKCLCEKAGVQHFGLHALRHLGASILLSENVPLPAVQEY 307 Query: 311 YGWKTVDQAETYTKGA 326 G + + TY Sbjct: 308 LGHERITTTNTYAHTL 323 >gi|78777830|ref|YP_394145.1| Phage integrase [Sulfurimonas denitrificans DSM 1251] gi|78498370|gb|ABB44910.1| Phage integrase [Sulfurimonas denitrificans DSM 1251] Length = 368 Score = 109 bits (272), Expect = 6e-22, Method: Composition-based stats. Identities = 57/353 (16%), Positives = 105/353 (29%), Gaps = 35/353 (9%) Query: 10 FVTKERTRHGKIIYYFRKGHGRRIRLPYPHES-------TFIPAYMSALTGSTP----KR 58 V ++G I YY + T AY + + Sbjct: 12 GVWINELKNGNIAYYINYRDEHGKPVKKKVGVKTKQSNFTVKDAYDRLIQAKHHLMTGEE 71 Query: 59 EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTK 117 S R K T + + W + + IS E Y+ I + D + I +K Sbjct: 72 SPFKSQRAKKFTFE---DAWLAYYEWAKVNKKTYISDEQYYRLHIAPTFANKDIKSIKSK 128 Query: 118 HIRSGVESRKHTPSSA---IQFLTSMRVLFKWAVRQEYVAINPCL----SVERPKRKTEG 170 I + +A ++ MR + +A++ + + V+ P Sbjct: 129 DIEQFKQLYTSKGYAAQSVKHYIGLMRHIINYAIKNDLIKNYANPISGGKVKLPTIDNAR 188 Query: 171 IRPWTKEDMQQFKSF--WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKT 226 +KE + E Q LLY+G R S+ ++ N+ K Sbjct: 189 QAFLSKEQARVILDELLQYENPQLYQLTILLLYTGARFSEVASLTWNNINFETNMIYFKA 248 Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT-------- 278 K G V + + +++ K I + + + ++ Sbjct: 249 TKNGNARWVFMNELVKEVIEQLKADKNNNLIIANTKGKQMERMLHSWQIVVDNIIDENKE 308 Query: 279 -KAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 A + H +R A+ A AG + G KT++ Y+ R Sbjct: 309 ADAKQRVTVHSLRHTHASWLAMAGLDILHIKEQLGHKTLEMTMRYSHLIPNKR 361 >gi|227528951|ref|ZP_03959000.1| bacteriophage integrase [Lactobacillus vaginalis ATCC 49540] gi|227351124|gb|EEJ41415.1| bacteriophage integrase [Lactobacillus vaginalis ATCC 49540] Length = 364 Score = 109 bits (272), Expect = 6e-22, Method: Composition-based stats. Identities = 41/352 (11%), Positives = 103/352 (29%), Gaps = 40/352 (11%) Query: 10 FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 + + +T K+ +Y G+R ST + A A+ + + + K Sbjct: 4 YFKRGKTWSTKVRWY--DDDGKRHSKSKSGFSTKLLAKQWAIDQESKLNKGVQ--IAKEI 59 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129 +L + + + L+ + ++ + + D + IT + + T Sbjct: 60 SLVDYYNNWVNTYKKDKLSEITLDRYKYTGEALKGFFHDDKIKSITRVKYQEFINQYGAT 119 Query: 130 --PSSAIQFLTSMRV----------LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 P++ + + +R L+K ++ + N V+ + I Sbjct: 120 HAPTTVKKVNSIIRACVKSAILDDYLYKDFTQRVELTANKDKVVKVDYLNLKEIHQLLTA 179 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237 + + G R +Y+G+R ++ + +I K+ + T + Sbjct: 180 ATDKIEHR--PGFTSRFMIVTAIYTGMRLAEIQALTWNDIDWLHQTININKSWDMKTHDF 237 Query: 238 PD-----------------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280 ++K+L F + + ++ Sbjct: 238 KPTKTESSNRKIKVNPELLHYLKILQDNRQSNLVFMNQYKSIP-TSNAVNKTLRSLLESL 296 Query: 281 GVNKS---AHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADR 328 +++ H +R + G + + G + TY D Sbjct: 297 NIDRRNFHFHSLRHSHVALLLANGIDLYAISKRLGHSNISITANTYAYLIDE 348 >gi|307566131|ref|ZP_07628589.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] gi|307345319|gb|EFN90698.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] Length = 407 Score = 109 bits (272), Expect = 6e-22, Method: Composition-based stats. Identities = 50/362 (13%), Positives = 97/362 (26%), Gaps = 28/362 (7%) Query: 1 MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60 M ++ + R + +Y K R + + Sbjct: 54 MVGKPKV--HIKHNRRKENLQLYLIAKPRTPIERQQNKETLELAAKIRAEREQQFKESML 111 Query: 61 -INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--------FDY 111 + + Y S L + ++ + Sbjct: 112 GYRLKKDRNINFLDYYQAYIDSYTKKDL-----RMIKIALNRFKDFLKEQYPLYEFSIKP 166 Query: 112 RKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169 IT + VE + A + + ++A+ E + +PC V Sbjct: 167 DLITKDMMERFVEYLQSRSVGEGAKSIYQRFKKVVRYAIDHEVMLKDPCKDVVCKVDDQI 226 Query: 170 GIRP---WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226 + + + +E R AF LY GLR D +++ +K Sbjct: 227 LRKDVLSMDEIQSLIQCHYDNENPNVRRAFILCLYCGLRFCDVKDLTYKNIDYTNRLLKF 286 Query: 227 QKTGTIITVELPDGFMKL---LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 ++ T + L L ++ + S K +AG+N Sbjct: 287 EQNKTKGHSAHSGVVIPLNDGLLSLIGDAPEDLDSSIFNLPSYESCSKSVKRWVKRAGIN 346 Query: 284 K--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 K S H R A + GA + + G + E YT+ D +L + + Sbjct: 347 KHISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVD--KLKSEAINSLPE 404 Query: 342 VV 343 + Sbjct: 405 LK 406 >gi|228926906|ref|ZP_04089972.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228936985|ref|ZP_04099727.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228822700|gb|EEM68590.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228832641|gb|EEM78212.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 368 Score = 109 bits (272), Expect = 6e-22, Method: Composition-based stats. Identities = 52/349 (14%), Positives = 109/349 (31%), Gaps = 42/349 (12%) Query: 17 RHGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + G G+R + + T A + + + TL Sbjct: 7 KRGNKYCIVIDIGPDPETGKRRQKWFSGYKTKKEA-QADVAKKITELNEGTFVEPSKITL 65 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 K + ++ + S+ +S ++S II G K+ HI+ +S ++ Sbjct: 66 KDYLIQWLEIKKM-SVEKSSLSRYQSNINKHIIPNIGMISLHKLNVMHIQKCYQSALNSG 124 Query: 131 SSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + L + AV+Q ++ NP PK++ I+ WT+E+++QF Sbjct: 125 IANNTILFQHRILTAALNLAVKQNIISRNPATLAVIPKKEKSSIQTWTEEEVKQFLLHSQ 184 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--------------TGTII 233 E S+ + + + +G+R + Q + N ++ + + Sbjct: 185 E-SRYHIGYLLAITTGMRLGEVLGLRWQDVDFNNHTVTINQTLGHDNKIKTSAKNNSSKR 243 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF--------------SIWFKAKATK 279 T+ +P ++ L + + + + F Sbjct: 244 TIPIPLEVIEELKKCKLQINKDKLRIGPAYHDLDLIVCNKLGKVTTRTTFTRHFDKVIKN 303 Query: 280 AGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA 326 AG+ K H R AT+ G + G + Y+ Sbjct: 304 AGIKKIKFHDTRHTHATLLLKQGVHPKVVSERLGHSDISLTLRVYSHVL 352 >gi|325473776|gb|EGC76964.1| integrase/recombinase XerD [Treponema denticola F0402] Length = 267 Score = 109 bits (272), Expect = 6e-22, Method: Composition-based stats. Identities = 38/245 (15%), Positives = 73/245 (29%), Gaps = 24/245 (9%) Query: 108 DFDYRKITTKHIRSGVESRKHTPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERP 164 D T + R + A + ++ F++ + + NP S+ERP Sbjct: 3 DSLIENATEADCIDFILHRSESGIMAKTIAKDIAALNSFFRFLIIEGVRKDNPSESIERP 62 Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220 KR+ R + +++ + S + R FE + +GLR S+ ++ + + Sbjct: 63 KREKTLPRVLSPDEVDSLFAAIPLDSPNNIRDRALFELIYSAGLRVSEIVNLKMEDIFYD 122 Query: 221 IF-SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN-------------- 265 T K V L + T + + Sbjct: 123 EDLIKVTGKGNKERIVPFGSAAKYWLKQYILEARTELLKPKHPENTLISGSVFLNNRGAV 182 Query: 266 --ATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + +G+ H +R AT GA + G + + YT Sbjct: 183 LTRKGIWKRINELSNFSGIETKVHTLRHSYATHLLAGGADLRSVQCLLGHSDISTTQVYT 242 Query: 324 KGADR 328 D+ Sbjct: 243 HIEDK 247 >gi|326402598|ref|YP_004282679.1| phage integrase family protein [Acidiphilium multivorum AIU301] gi|325049459|dbj|BAJ79797.1| phage integrase family protein [Acidiphilium multivorum AIU301] Length = 423 Score = 109 bits (272), Expect = 6e-22, Method: Composition-based stats. Identities = 51/367 (13%), Positives = 105/367 (28%), Gaps = 40/367 (10%) Query: 21 IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTP-----KREYINSPRKKPTTLKWLI 75 + Y +G RR + + T A + A P TT+ + Sbjct: 48 VQYRTPEGKHRRTVIGHYGLMTVEQARVIAREKLVAVSKGVDPAAPVEPDGSTTTVGQIC 107 Query: 76 SEYRKS--------AHWGSLAVNSRI-SFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 Y + ++ I GD + I + Sbjct: 108 DWYLLEANAGRILGRRRRPIRASTLTMDKSRIETHIRPLLGDRRVSSLKLGDIEAMQADI 167 Query: 127 KHTPSS-----------------AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169 ++ A + ++S+ +F+ AVR + NP V + Sbjct: 168 AAGKTAKGRAGPRGGTPIGGEGVAARTVSSLHSIFEHAVRWGKIESNPARGVRKLASAPR 227 Query: 170 GIRPWTKEDM-----QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 R + E + + E A LL +G R + + +I Sbjct: 228 ERRLSSVEIARLGEAMRTLAAEGEHPTGLAAIRLLLLTGFRRMECLALQRAWVDAEQRAI 287 Query: 225 KTQKTGT--IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 + +T T + V +LA + D + + A + Sbjct: 288 RLPETKTGPQMRVVGQAAIDLILAQPVTDGSPYVFPADWGNGHFIGVVRVLERVCGAARL 347 Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS-RRIS 340 + + H +R A+++ D G + + A G + Y + +R+ ++ Sbjct: 348 TDVTPHTLRHTFASVAGDLGFSELTIAALLGHAARGVTQRYVHIDEALRVAADRVSAKVV 407 Query: 341 SVVDSDD 347 +++D D Sbjct: 408 ALLDGRD 414 >gi|323973234|gb|EGB68426.1| phage integrase [Escherichia coli TA007] Length = 331 Score = 109 bits (272), Expect = 6e-22, Method: Composition-based stats. Identities = 50/317 (15%), Positives = 102/317 (32%), Gaps = 21/317 (6%) Query: 14 ERTRHGKIIYYFRK--GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 ++ + G+ R GRRIR + + + + + P + L Sbjct: 4 KQLKDGRYQVDVRPQGAGGRRIR-KIFTLKSKAQEFERYVLQNFHNNPWQARPADQRR-L 61 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT-- 129 LI + ++ + +++IR+ GD ++T K + + Sbjct: 62 SELIEVWW---MLDGRNQAYGDTYRTRLEKVIREMGDPRASQMTRKFMIEYRSDKLQAGL 118 Query: 130 -PSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 PSS + L ++ +F + + Y NP + + K + + + +++ + Sbjct: 119 MPSSINRDLCALSAMFSLLIDAEVYHNENPVRGIRKLKVQNTEMAFLSDDEIDRLLKR-- 176 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247 R L +G R ++ +H+ N + K G +V + D + L+ Sbjct: 177 LEGDARRIAILCLSTGARWKEASTLRGEHIVGNRVTFFNTKNGKSRSVPVADSVVPLIKT 236 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307 G F + ++ H +R AT G L Sbjct: 237 RRTGLLYQVDYL--------SFREILQEVKPDLPKGQATHVMRHTFATHFMMNGGNIVTL 288 Query: 308 MATYGWKTVDQAETYTK 324 G T+ Q TY Sbjct: 289 QRILGHATIQQTMTYAH 305 >gi|291557723|emb|CBL34840.1| Site-specific recombinase XerD [Eubacterium siraeum V10Sc8a] Length = 357 Score = 109 bits (272), Expect = 6e-22, Method: Composition-based stats. Identities = 41/317 (12%), Positives = 95/317 (29%), Gaps = 55/317 (17%) Query: 73 WLISEYRKSAH-WGSLAVNSRISFESYFDQIIRK-------------SGDFDYRKITTKH 118 ++EY + + + +++ + +R + + K+ Sbjct: 16 ACLTEYLNYLTTIKNRSQLTALNYYTDLRMFMRFLKVKNKLVDANEDFSEIKISDLDDKY 75 Query: 119 IRSGV------------ESRKHTPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPK 165 I++ R + + + S+R +K+ + + A +P L++E P Sbjct: 76 IKAVTLTDAMEFLSFTVSERSNQAKARSRKAVSLRQFYKFLTNNKAWFAASPMLNLELPS 135 Query: 166 RKTEGIRPWTKEDMQQFKS------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219 K + T ++ Q + L G+R S+ V Sbjct: 136 PKNALPKHLTLQECGQLLHEGFKEFSSWMDYRDYAMIIMFLNCGMRLSELVGITVNDFVE 195 Query: 220 NIFSIKTQKTG----------TIITVELPDGFMKLLAMT--------PIGKETFFINNDK 261 NI + V L + + + ++ FI+ Sbjct: 196 NIDPSQPCVKYLSVKVLGKGNKERIVYLNEQCVDAVTKYTEARKSVADPKEKALFISKRG 255 Query: 262 QKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 ++ + + G+ S H +R +AT+ G L G + ++ Sbjct: 256 NRITNRRVEQIIDDRLKACGLAGKGISVHKLRHTAATLMYQNGVDVRVLKEVLGHENLNT 315 Query: 319 AETYTKGAD-RIRLGIK 334 + YT + ++R I Sbjct: 316 TQIYTHVVNTQLRDAIN 332 >gi|53712520|ref|YP_098512.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] gi|52215385|dbj|BAD47978.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] Length = 419 Score = 109 bits (272), Expect = 6e-22, Method: Composition-based stats. Identities = 32/271 (11%), Positives = 81/271 (29%), Gaps = 15/271 (5%) Query: 82 AHWGSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIRSGVESRKHTP---------- 130 + + + +++ + + +G+ + KI + P Sbjct: 140 KRHANSSESIIVNWRRTHELLKIFAGEYLPFSKIDNRLAEDFRMFMLSAPCGGKKSGTVS 199 Query: 131 -SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 ++A + + + K A +Y+ ++ ++ + + T E++ S E Sbjct: 200 QNTAATYFSIFKAALKQAFIDDYLTVDLSAKIKGIQEQESRREYLTVEELNMLASTPCER 259 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249 + + F +GLR D + + + + + T + Sbjct: 260 DVLKRSALFSALTGLRHCDIQKLRWKEISMDGNQARLHFTQQKTKGVEYMPISEQALQLC 319 Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHEL 307 + + + S K AG+ K + H R AT+ + + + Sbjct: 320 GERRKPEQLVFEDLPDPAWISKPLKKWVESAGIKKKITYHCFRHTFATLQLSSSTDIYTV 379 Query: 308 MATYGWKTVDQAETYTKGADRIR-LGIKNSR 337 G V + Y K D + + + Sbjct: 380 SKMLGHTNVKTTQIYAKVVDEKKNKAAQAIQ 410 >gi|307546851|ref|YP_003899330.1| integrase/recombinase XerC [Halomonas elongata DSM 2581] gi|307218875|emb|CBV44145.1| K03733 integrase/recombinase XerC [Halomonas elongata DSM 2581] Length = 308 Score = 109 bits (272), Expect = 6e-22, Method: Composition-based stats. Identities = 40/292 (13%), Positives = 87/292 (29%), Gaps = 23/292 (7%) Query: 62 NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKH 118 P T L + ++ + + + ++ ++ D + Sbjct: 2 ARPLDTSTPLGREADAFLEALS-RTASPATVDAYRRDLAALLDFLDRHDIGDPAALDAAL 60 Query: 119 IRSG---VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 +R SR P S + ++ + + Y+ NP V P+ + RP Sbjct: 61 LRRFLGGERSRGLAPRSLARRRAALSRFAEHLMACGYLDHNPVSLVRTPRVPRDLPRPVD 120 Query: 176 KEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 + + +F +GS + + E SGLR ++ + + K G Sbjct: 121 VDALARFLDTPHDGSPLACRDQAMLELFYSSGLRLAELAALDLDDIHARRVR-VLGKGGK 179 Query: 232 IITVELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV- 282 V + + L G+ F+ ++ + A G+ Sbjct: 180 PRQVPVGRRADQALTDWLSLRGALAADGEPALFVGARGNRLGHRAIQQRMRQLALTRGLA 239 Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 + H +R A+ ++ + G + + YT+ D L Sbjct: 240 EHLHPHRLRHSFASHLLESSQDLRAVQELLGHANLSTTQVYTR-LDWQHLAA 290 >gi|169830786|ref|YP_001716768.1| phage integrase family protein [Candidatus Desulforudis audaxviator MP104C] gi|169637630|gb|ACA59136.1| phage integrase family protein [Candidatus Desulforudis audaxviator MP104C] Length = 317 Score = 109 bits (272), Expect = 6e-22, Method: Composition-based stats. Identities = 49/297 (16%), Positives = 91/297 (30%), Gaps = 42/297 (14%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYF----DQIIRKSGDFDYR----KITTKHIRSGVE 124 LI + + + +++ D R+ G D I K R + Sbjct: 4 LIDGFLAYLQAERQASPRTITAYQKDLFAGLDYFARRRGKADAELRAGDIDLKLFRGYLA 63 Query: 125 SRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + S+ + + + R F++ VR+ V +P + P+ K E++ Sbjct: 64 HLGQSGLARSTIARKVAAWRSFFRYLVRENAVPASPLAGMSAPRLKKRLPGVLYPEEVGT 123 Query: 182 FKSFWSE---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL 237 G + R E L GLR S+ + L+ ++ K + L Sbjct: 124 LLEAPDLSPTGLRDRALLEMLYAGGLRVSELVGLDLADLELKQAYVRVLGKGNRERLLPL 183 Query: 238 PDGFMKLLAMTPIGKETF-----------FINNDKQKMNATQFSIWFKAKAT--KAGVNK 284 ++ L F+N +++ + F +GV Sbjct: 184 GGYAVEALKRYLAEGRPKLLGGKKTTAALFLNYRGERLTDRGVRLVFTNYLKGLASGVPG 243 Query: 285 S------------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADR 328 H +R AT +AGA + G + + YT+ ADR Sbjct: 244 GTRFSGSADRQAGPHLLRHCFATHLLEAGADLRTVQELLGHARLSTTQIYTRVSADR 300 >gi|210622505|ref|ZP_03293210.1| hypothetical protein CLOHIR_01158 [Clostridium hiranonis DSM 13275] gi|210154218|gb|EEA85224.1| hypothetical protein CLOHIR_01158 [Clostridium hiranonis DSM 13275] Length = 302 Score = 109 bits (272), Expect = 6e-22, Method: Composition-based stats. Identities = 46/276 (16%), Positives = 105/276 (38%), Gaps = 21/276 (7%) Query: 74 LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGV---ESRK 127 LI EY + L++N+ S+ + + + D + + I + + E Sbjct: 14 LIKEYIEYIENKRKLSLNTVSSYRADLKKYKDYLEENNIDIKDVVETDILNYLVELEKNN 73 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + S+ + +S++ + + AI+P ++++PK K E + T+E+++ +F + Sbjct: 74 TSVSTIARTTSSIKSFHDYLFFSKICAIDPAKNIKKPKIKKETVEILTEEEIEALLNFEN 133 Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 S + + FE L +G++ S+ V+ + + SI + + L D K Sbjct: 134 LDSNKLKRDKAIFEVLYGTGMKVSELIDLNVEDVDFEMGSITCSSSKNKRVIPLIDVTKK 193 Query: 244 LLAMTPIGKETFFINNDK---------QKMNATQFSIWFKAKATKAGVNKS--AHGVRKF 292 L + + + + + K + KA ++K+ +R Sbjct: 194 YLELYVNEARENVVADGENALFVSALGHRFTRQGLWKIIKKYSKKANIDKNINPTMLRHS 253 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 A + GA + G + ++Y D+ Sbjct: 254 FAIHMINKGANIASVNKILGNTNLSSIQSYLSCIDQ 289 >gi|325506468|gb|ADZ18106.1| site-specific tyrosine recombinase xerD [Chlamydophila psittaci 6BC] gi|328914913|gb|AEB55746.1| integrase/recombinase XerD [Chlamydophila psittaci 6BC] Length = 299 Score = 109 bits (272), Expect = 6e-22, Method: Composition-based stats. Identities = 36/263 (13%), Positives = 86/263 (32%), Gaps = 23/263 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMR 141 L+ NS ++ ++ + +I+ + V+ ++ + L +++ Sbjct: 22 RGLSCNSISAYIQDITLFLKINAITSIAEISQDSVHLFVDQLHKRKEAEATLARRLIALK 81 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-------SFWSEGSQPRL 194 V F++ + + P + E PK T +++ + ++ Sbjct: 82 VFFRFLKEAKLLEHPPLI--EHPKIWKRLPTVLTPKEVDTLLAIPKKTTTSSMISTRDTA 139 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII----------TVELPDGFMKL 244 L +G+R S+ C + + ++ + + + T + F + Sbjct: 140 ILHTLYSTGIRVSELCGLHIGDVSDDFLRVTGKGSKTRLVPLGKLASEAIDAYLCPFREN 199 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGAT 303 L + F++ +K+ + A + + S H +R AT D A Sbjct: 200 LQKKQPEEHHLFLSIRGRKLERSCVWKRIHYYAKQVTHKRVSPHSLRHAFATHLLDNKAD 259 Query: 304 AHELMATYGWKTVDQAETYTKGA 326 + G + E YT A Sbjct: 260 LRVIQEMLGHARIASTEVYTHVA 282 >gi|154509161|ref|ZP_02044803.1| hypothetical protein ACTODO_01682 [Actinomyces odontolyticus ATCC 17982] gi|153798795|gb|EDN81215.1| hypothetical protein ACTODO_01682 [Actinomyces odontolyticus ATCC 17982] Length = 303 Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats. Identities = 41/293 (13%), Positives = 93/293 (31%), Gaps = 33/293 (11%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-------GDFDYRKITTKHIRSGV 123 + EY + ++ ++ ++ ++ + +T + +RS + Sbjct: 5 VGERWEEYLRL--GRRMSPHTVSAYLGDLHSLMEFLSLDADATPEQLREALTQRAVRSWL 62 Query: 124 ESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 S+ + ++R WA+R+ + +P + P+ P + D + Sbjct: 63 ARTLADGGARSTIARHTAAIRNFTSWAMREGILVSDPAALLSSPRADQLLPSPLDESDAR 122 Query: 181 QFKSFWSEGS--------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GT 231 + + + + E GLR S+ C + L + +++ Sbjct: 123 VLLNTARDEAAAGGASQIRNWAILELTYACGLRVSEVCALDISSLNRDALTVRVVGKGNK 182 Query: 232 IITVELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAG 281 V L + F+ + +++ A +AG Sbjct: 183 ERVVPYGPPAADALDHWLVRGRPQLAGERSGNALFLGDKGGRIDPRIVRSMVHKTAARAG 242 Query: 282 V-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 V + + HG+R +AT GA + G ++ + YT D RL Sbjct: 243 VHDIAPHGLRHSTATHLLQGGADLRAVQEMLGHSSLSTTQRYTH-VDTARLSA 294 >gi|183981830|ref|YP_001850121.1| integrase/recombinase XerC [Mycobacterium marinum M] gi|183175156|gb|ACC40266.1| integrase/recombinase XerC [Mycobacterium marinum M] Length = 302 Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats. Identities = 39/289 (13%), Positives = 92/289 (31%), Gaps = 27/289 (9%) Query: 72 KWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKH 128 + ++ E+ + + ++R ++ ++ D R ++ +RS + + Sbjct: 6 EAILEEFDEYLALQCGRSAHTRRAYLGDLRSLLDYLAGRGADLRALSLPVLRSWLATAAG 65 Query: 129 TPSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 ++ + ++++ WAVR+ +A +P ++ PK ++ + Sbjct: 66 AGAARTTLARRTSAVKAFTAWAVRRGLLATDPAARLQVPKAHRTLPAVLRQDQALAAMTA 125 Query: 186 WSEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE 236 G + RL E L +G+R S+ C + + ++ K T Sbjct: 126 AKSGAQQGDPLALRDRLIVELLYATGIRVSELCGLDIDDVDTGHRLVRVLGKGNKQRTAP 185 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKM---NATQFSIWFKAKATKAG---------VNK 284 + L + A + + T + Sbjct: 186 FGQPAAEALQAWLADGRPALATAESGPALLLGARGRRLDVRQARTVVHQTVAAVDGAPDM 245 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 HG+R +AT + GA + G ++ + YT A + Sbjct: 246 GPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSRLRAV 294 >gi|255311152|ref|ZP_05353722.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis 6276] gi|255317453|ref|ZP_05358699.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis 6276s] Length = 315 Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 96/302 (31%), Gaps = 43/302 (14%) Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD------------------ 110 T+ + Y K+ SL ++ ++ + Sbjct: 3 TSFYAFLD-YLKNMKASSL--HTLRNYCMDLSSLKCFLEKKSDLSPTPPLSLHDNTYDYP 59 Query: 111 ---YRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164 + T +IR + + H+ + + L++++ ++ V+ + + NP + P Sbjct: 60 PLSFSLFTKDNIRLYLLEQIQTHHSKRTVRRRLSAIKSFARFCVKNQLIPENPVEMIRGP 119 Query: 165 KRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220 + E P T E + + G + R E SGLR S+ + Sbjct: 120 RLPQELPSPLTYEQVLALMAAPELDKVTGFRDRCLLELFYSSGLRISEITALNRADIDFQ 179 Query: 221 IFS-IKTQKTGTIITVELPDGFMKLLAMTPIG---------KETFFINNDKQKMNATQFS 270 K V + ++ L + F+N ++++ Sbjct: 180 SHLLHIRGKGKKERIVPMTKVAVQWLQDYLNHPDRASVEQDHQACFLNRFGKRLSTRSID 239 Query: 271 IWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 F+ K G++ + H +R AT + G + G +++ YT + + Sbjct: 240 RKFQQYLLKTGLSGSITPHTIRHTIATHWLERGMDLKTIQLLLGHTSLETTTIYTHVSMK 299 Query: 329 IR 330 ++ Sbjct: 300 LK 301 >gi|257791278|ref|YP_003181884.1| integrase family protein [Eggerthella lenta DSM 2243] gi|257475175|gb|ACV55495.1| integrase family protein [Eggerthella lenta DSM 2243] Length = 357 Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats. Identities = 47/361 (13%), Positives = 98/361 (27%), Gaps = 42/361 (11%) Query: 7 LPPFVTKERTRHGKII---YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63 +P ++ + G YY R+ ++ + A ++ Sbjct: 1 MPAYMN---GKTGSWYVQCYYSDIDGNRKHKVKRGFATKGDALAWEA-------DFLASA 50 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG 122 + + Y + L +N+ ++ E +I+ G IT K + Sbjct: 51 DGSMSMPFEAFVKRYSEDVRPR-LKLNTWLTKEHIIRTKIVPFFGPKRMCDITPKDVVDW 109 Query: 123 VESR---------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-GIR 172 ++ + + +F AV+ + +P + + +R Sbjct: 110 QNRMVGSYDDEGKPYSGTYLRTINNQLSAIFNHAVKYYGLGKSPATPTIKIGERKGAEMR 169 Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 WTKE F + AFE L + GLR + + I K+ Sbjct: 170 FWTKEQYLAFSEEVMDKPASFYAFEILYWCGLRVGELLALEPNDIDLGKCLIHVTKSYQR 229 Query: 233 ----------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK 276 V +P+ LA + K Sbjct: 230 IRRRDVITSPKTPKSKRDVVMPEFLADELADFLGSIPEERRACRIFCFTKSYLHHEMKRG 289 Query: 277 ATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 G+ H +R ++ + G +A + G +T + Y + + Sbjct: 290 CAACGLEPIRIHDLRHSHVSLLIEMGFSAIAIADRLGHETYEMTLRYAHLFPSKQSDMAA 349 Query: 336 S 336 + Sbjct: 350 A 350 >gi|307710454|ref|ZP_07646891.1| phage integrase family protein [Streptococcus mitis SK564] gi|307618717|gb|EFN97856.1| phage integrase family protein [Streptococcus mitis SK564] Length = 384 Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats. Identities = 56/366 (15%), Positives = 108/366 (29%), Gaps = 55/366 (15%) Query: 11 VTKERTRHGKIIYYF-------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63 + K +T+ G I+YY G +R Y + L Sbjct: 3 IHKYKTKKG-ILYYVSFYIGLDAYGKKKRHLKRGFKTKKEAKLYEARLEAGVVAPTVSTD 61 Query: 64 PRKKPTTLKWLISEYRKSAH---WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 T K L E+ + + + ++ + I+ GD +I+ + Sbjct: 62 KPNPKVTYKELYQEWFNAYVGTVEETTSSQTKNIYRI---HILPIFGDKFIDQISPLDCQ 118 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-IRPWTKEDM 179 + + + T + Q + +F +A+ Y+ NP +V PK K W+ E++ Sbjct: 119 NFITQKSQTFKNIKQIKSYTSKIFDFAINMNYIDRNPMKNVIMPKIKKTRSDNFWSLEEL 178 Query: 180 QQFKSFWSEGSQPRLAFEFLL--YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----- 232 F E + F L +SGLR + + + + K+ Sbjct: 179 HHFLDIVKETEPFKHFALFRLLAFSGLRKGELYALKWADINFDSNLLNIDKSLGRIDGKA 238 Query: 233 -----------ITVELPDGFMKLLAMTP--------------------IGKETFFINNDK 261 T+ L D + ++ N+ Sbjct: 239 IEKSTKNESSVRTIYLDDETIDIIKQWRNFYLKEQSQLPLTKLNISNEYMFSYISSNDKI 298 Query: 262 QKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA- 319 + ++A + K + S HG R AT+ ++ G G + Sbjct: 299 EPLHADYINNVLNRIIKKHKLKPISPHGFRHTHATLMSEIGIDPSNTSKRLGHASSQVTL 358 Query: 320 ETYTKG 325 + YT Sbjct: 359 DVYTHT 364 >gi|160886776|ref|ZP_02067779.1| hypothetical protein BACOVA_04789 [Bacteroides ovatus ATCC 8483] gi|298383599|ref|ZP_06993160.1| tyrosine type site-specific recombinase [Bacteroides sp. 1_1_14] gi|156107187|gb|EDO08932.1| hypothetical protein BACOVA_04789 [Bacteroides ovatus ATCC 8483] gi|298263203|gb|EFI06066.1| tyrosine type site-specific recombinase [Bacteroides sp. 1_1_14] Length = 381 Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats. Identities = 51/373 (13%), Positives = 104/373 (27%), Gaps = 36/373 (9%) Query: 4 SLRLPPFVTKERTRHGKIIYY---FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60 ++ P + + G Y +R G L + Sbjct: 9 KVKEPIRLRMKPLSDGSKSLYLDIYRDGKRTYEYLKMYIIPETDNNARRQNQATMDAANA 68 Query: 61 INSPRKKPTT--------------LKWLISEYRKSAHWGSLAV-NSRISFESYFDQIIRK 105 I S R T L + Y ++ N + Sbjct: 69 IKSKRIIELTSNEAGIVFRKDKTYLLDWMKVYMEAQESAGKKDGNQIKIAMRILKDYAGE 128 Query: 106 S-------GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158 GDF IT + + + + + ++ AVR++ + NP Sbjct: 129 MVTLDQIDGDFCRGYITYLLTEYHPKGKDISNYTLHNYYRALNGALNSAVRKKKMKANPF 188 Query: 159 ------LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212 + +P+ + + + E + A+ F + GLR SD + Sbjct: 189 NELEKSEKIRKPESMRSYMTIEEVQALIDTPMPHEEYEIVKCAYLFSCFCGLRISDIIKL 248 Query: 213 GVQHLQNNIFSIKTQKTGTIITVELPDG-FMKLLAMTPIGKETFFINNDKQKMNATQFSI 271 + + + + + + + L P +N +A + Sbjct: 249 KWKDVFVDRGQYRLAVSMKKTKEPIYLPLSPEALKWMPERGGKSSEDNVFDLPSANTIRM 308 Query: 272 WFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 K A AG++K H R AT+ GA + + G V + Y K ++ Sbjct: 309 QLKPWAKAAGISKRFSYHTSRHTFATMMLTLGADLYTVSKLLGHADVKMTQVYAKIINKK 368 Query: 330 RLGIKNSRRISSV 342 + + ++ + Sbjct: 369 K--DEAVNLVNGL 379 >gi|148984624|ref|ZP_01817892.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP3-BS71] gi|148997026|ref|ZP_01824680.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP11-BS70] gi|149007165|ref|ZP_01830829.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP18-BS74] gi|149010476|ref|ZP_01831847.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP19-BS75] gi|168484778|ref|ZP_02709723.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae CDC1873-00] gi|168575549|ref|ZP_02721485.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae MLV-016] gi|169832442|ref|YP_001694344.1| phage integrase family integrase/recombinase [Streptococcus pneumoniae Hungary19A-6] gi|194397446|ref|YP_002037527.1| phage integrase family integrase/recombinase [Streptococcus pneumoniae G54] gi|221231667|ref|YP_002510819.1| putative integrase/recombinase [Streptococcus pneumoniae ATCC 700669] gi|225854397|ref|YP_002735909.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae JJA] gi|225856554|ref|YP_002738065.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae P1031] gi|307067543|ref|YP_003876509.1| integrase [Streptococcus pneumoniae AP200] gi|147756726|gb|EDK63766.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP11-BS70] gi|147761203|gb|EDK68170.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP18-BS74] gi|147764957|gb|EDK71886.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP19-BS75] gi|147923015|gb|EDK74130.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP3-BS71] gi|168994944|gb|ACA35556.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae Hungary19A-6] gi|172042056|gb|EDT50102.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae CDC1873-00] gi|183578532|gb|EDT99060.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae MLV-016] gi|194357113|gb|ACF55561.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae G54] gi|220674127|emb|CAR68646.1| putative integrase/recombinase [Streptococcus pneumoniae ATCC 700669] gi|225723828|gb|ACO19681.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae JJA] gi|225725861|gb|ACO21713.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae P1031] gi|301799879|emb|CBW32455.1| putative integrase/recombinase [Streptococcus pneumoniae OXC141] gi|306409080|gb|ADM84507.1| Integrase [Streptococcus pneumoniae AP200] Length = 321 Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats. Identities = 32/262 (12%), Positives = 79/262 (30%), Gaps = 14/262 (5%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESRKHT 129 L+ + + + + ++ + + ++TT +R + + + Sbjct: 46 LLQLFITAKQVEGCSSKTIRYYQRTIENLFNAI-KESVTQLTTDDLRSYLANYQSEKDCS 104 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 ++ + F W ++EY+ NP +++ K + +T E ++ + E Sbjct: 105 KANLDNIRRILSSFFAWLEQEEYIIKNPIRRIKKIKTEQNVKETYTDEHLEIMRD-NCEN 163 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT 248 + + L +G+R + + + V L Sbjct: 164 LRDLAIIDLLASTGMRVGELVQLNRSDIDFENRECVVFGKGKKERPVYFDARTKIHLRNY 223 Query: 249 PIGKETFFINNDK------QKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAG 301 ++ Q++ I + K G+ H R+ AT + D G Sbjct: 224 LNDRKDSHPALFVTLVGKAQRLGIAGVEIRLRKLGDKLGIQKVHPHKFRRTLATKAIDKG 283 Query: 302 ATAHELMATYGWKTVDQAETYT 323 ++ G +D Y Sbjct: 284 MPIEQVQKLLGHSKIDTTLAYA 305 >gi|160881628|ref|YP_001560596.1| integrase family protein [Clostridium phytofermentans ISDg] gi|160430294|gb|ABX43857.1| integrase family protein [Clostridium phytofermentans ISDg] Length = 443 Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats. Identities = 46/402 (11%), Positives = 108/402 (26%), Gaps = 69/402 (17%) Query: 2 TPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61 SL LP +T+ G+ + R + L + + ++ Sbjct: 51 KKSLNLPKGITRCSD--GRYQARYTYEGHRYCLYGRD-----VKELEERLNNAKYEIQHG 103 Query: 62 NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFES-YFDQIIRKSGDFDYRKITTKHIR 120 +++ +L + ++ + S+E Y + + G + I +HI+ Sbjct: 104 IYAKEERISLNAWYETWINEYKSMTVKQGTVESYECMYLYYVKPELGKRLIKDIRGEHIQ 163 Query: 121 SGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 ++ S+ + +FK A++ E + NP P+ + + R Sbjct: 164 KLYNDLSRNGYSKSTISLIHVLLGAMFKQALKNELIKKNPVDFTTLPRAERKKERRVLTL 223 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYS--------GLRCSDSCRAGVQHLQNNIFSIKTQKT 229 Q+ G + L + GL D + + Sbjct: 224 KEQEILLKEITGHELEPVVRLSLATGLRVGEVTGLEWCDVDFNKKEVTVRGTLKCTRKGM 283 Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK--------ATKAG 281 D + + + + QK + I +K + G Sbjct: 284 EYYKDTPKTDKSTRSIPLLDNMELMLKRYRIIQKEHKLSMGIDWKPIEGLEDLVFLREDG 343 Query: 282 VNK---------------------------------------SAHGVRKFSATISADAGA 302 + H +R AT + + G Sbjct: 344 KPFSGQHIRQQLVHIVDGINEKYYSKKSIRQEKLLEEKFDYFTPHALRHTFATRALENGI 403 Query: 303 TAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVV 343 + G ++ + YT + + + +++ S++ Sbjct: 404 PPKVVQEILGHSSITMTLDLYTHVLPQTK--AQEMKKLESLI 443 >gi|303245973|ref|ZP_07332255.1| integrase family protein [Desulfovibrio fructosovorans JJ] gi|302492756|gb|EFL52624.1| integrase family protein [Desulfovibrio fructosovorans JJ] Length = 395 Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats. Identities = 50/381 (13%), Positives = 108/381 (28%), Gaps = 40/381 (10%) Query: 1 MTPSLRLP---PFVTKE------RTRHGKIIYYFRKGHGRRIRLPYPH------ESTFIP 45 M R P V ++ +I Y + G+ I Sbjct: 1 MPAKKRFKTSYPGVYYVEGQAVATSKPERIYYVMYRRDGKLIEEKAGRQHQDAMTPAKAA 60 Query: 46 AYMSAL--------TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFES 97 + + + T L EY S A+ + Sbjct: 61 RIRAERIEGKALSNQARREEDKAAKEAEAGRWTFTRLWEEY-SSQKTPGAALTT--DRSR 117 Query: 98 YFDQIIRKSGDFDYRK---ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA 154 + + G+ D + + +RS + + +P + L + L ++ V++ Sbjct: 118 FEKYLKPTFGEKDPVEVLTLDLDRLRSRLLKQGKSPQTVKHVLALFKRLVRFGVKKGLCD 177 Query: 155 INPCLSVE--RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL--YSGLRCSDSC 210 P+ E +++ + + + A L ++G+R + Sbjct: 178 SPDPRKQTISMPRVDNETTEDLDADELARLVQAIEDEPNIQAANFMRLAMFTGMRRGELF 237 Query: 211 RAGVQHLQNN--IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ 268 + + + I+ K G + L D +L P T ++ + Sbjct: 238 KLEWRDVDFERGFIHIRHPKGGKSQKIPLNDAARGVLEDHPHVDGTPYVFPGQGGKQRVT 297 Query: 269 FSIWFKAKATKAGVNKSA---HGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTK 324 + T+AG+ HG+R A+ A +G L K+ + Y+ Sbjct: 298 IQVASNRIKTRAGLPADFRPLHGLRHLFASTLASSGQVDMLTLQKLLTHKSPQMTKRYSH 357 Query: 325 GADRI-RLGIKNSRRISSVVD 344 D + + + + V Sbjct: 358 LRDDALKQASEVAGNLLGNVG 378 >gi|227484863|ref|ZP_03915179.1| possible phage integrase [Anaerococcus lactolyticus ATCC 51172] gi|227237223|gb|EEI87238.1| possible phage integrase [Anaerococcus lactolyticus ATCC 51172] Length = 377 Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats. Identities = 51/367 (13%), Positives = 113/367 (30%), Gaps = 52/367 (14%) Query: 10 FVTKERTRHGKIIYYF------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63 + R ++G++ Y F G+ IR ++ A ++ + Sbjct: 2 NIKSYRDKNGELRYKFNAYLGTDDITGKEIRTNRSGFTSKKQAELAYANLRNENLRRKKN 61 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 P T K + + + + + + + I G+ + ITT ++ Sbjct: 62 P-----TFKEIGERWLELYSKTVKYSSYQRTKSLFNTHIYPFIGNKLLKSITTAMLQELT 116 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK------TEGIRPWTKE 177 + +S + ++ +F +A+ ++ V NP LSV P E I W K+ Sbjct: 117 NKKSKELASFSKINAQIKRVFDYAISRDIVDYNPALSVIYPITNVNSVDRYESIEFWEKD 176 Query: 178 DMQQFKSFWSEGSQPRLAFEFLL--YSGLRCSDSCRAGVQHLQNNIFSIKTQK------- 228 ++++F + + F + Y+G+R S+ + N +I K Sbjct: 177 ELKEFLTACKKDLDFMWFCYFWILSYTGMRKSELQALEWADIDFNRRTININKSLSVYKD 236 Query: 229 ----------TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF--------- 269 + + + +KLL + + + Sbjct: 237 NKKFISSTKTKNSTRIITIDSITVKLLLDWKQQQSEIYKKTVIKGKTQKYVFTDKSLELT 296 Query: 270 -----SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETY 322 F + K H +R A++ +AG ++ G ++ Y Sbjct: 297 SHNAPRKRFLRVLKNNNLRKIRLHSLRHTHASLCFEAGMDIKDVQHRLGHSNIETTLNIY 356 Query: 323 TKGADRI 329 + Sbjct: 357 VHISKIK 363 >gi|325280617|ref|YP_004253159.1| Tyrosine recombinase xerC [Odoribacter splanchnicus DSM 20712] gi|324312426|gb|ADY32979.1| Tyrosine recombinase xerC [Odoribacter splanchnicus DSM 20712] Length = 307 Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats. Identities = 41/288 (14%), Positives = 81/288 (28%), Gaps = 38/288 (13%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDY----RKITTKHIRSGVES---- 125 I + + + +++ +Q + +IT+K +R Sbjct: 3 IDSFLSYLKNIKRYSALTITAYKEDLNQFREFCEKVELIRQDEEITSKMVRRFEMGLMSG 62 Query: 126 -------------RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 R T S + L+S+R F++ VR+ + +P V PK Sbjct: 63 GLKIGGVDGEEKLRPMTARSVRRKLSSLRTYFRYLVREGKLTEDPTEIVVAPKMGKRLPV 122 Query: 173 PWTKEDMQQFKSFW-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227 M + + R+ Y+G+R S+ ++ + I+ Sbjct: 123 FVPDYQMDEVLDKHASDKDFANIRDRMVLMTAYYTGMRRSELVALKLEDVDLEGAVIRVN 182 Query: 228 KT-GTIITVELPDGFMKLLAMTPIGKE-----TFFINNDKQKMNATQFSIWFKAKATKAG 281 V + L + +E K ++ G Sbjct: 183 GKGDKQRIVPMLPELAGDLRIYLNKREELVGEKHQFVFVTDKGKPVYDKFIYRLAVKYLG 242 Query: 282 -----VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +S H +R AT + GA + G + + YT Sbjct: 243 EVTSLKKRSPHVLRHSFATALLNNGACIEAIRELLGHAGLAATQIYTH 290 >gi|294789666|ref|ZP_06754899.1| tyrosine recombinase XerC [Simonsiella muelleri ATCC 29453] gi|294482378|gb|EFG30072.1| tyrosine recombinase XerC [Simonsiella muelleri ATCC 29453] Length = 302 Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats. Identities = 32/266 (12%), Positives = 73/266 (27%), Gaps = 16/266 (6%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVESRKHTPSSA 133 + Y + ++ ++ ++ + + + + R P S Sbjct: 16 LDAYLTQLTQQGKSPHTLDAYRRDLIELANMLPENQQPTRNDVVRVLKQLSQRGQHPRSL 75 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--- 190 + LTS R ++ V ++ NP ++ PK + +E + Q S Sbjct: 76 ARKLTSWRQYAEYLVHLGELSSNPIAHIKAPKPPERLPKAIDREQINQMIDQDIPQSDDV 135 Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247 + E SGLR ++ V + + + G Sbjct: 136 LAIRDHAMIELFYGSGLRLAELHALNVDDVLLDAGWVMVSGKGKRQRQVPLTRPSIAAID 195 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---------NKSAHGVRKFSATISA 298 + + + + A + + + S H +R A+ Sbjct: 196 AYLSTRYAVDGELALFTSRHGTRLCTRQIAKRLEIWSQNNQANQHISPHMLRHSYASHLL 255 Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324 A + G + + + Y K Sbjct: 256 QASRDVRAVQELLGHQNLSTTQIYAK 281 >gi|7263003|gb|AAF44051.1|AF206717_5 ResU [Shuttle vector pI3] Length = 321 Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats. Identities = 40/293 (13%), Positives = 83/293 (28%), Gaps = 38/293 (12%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQII---------RKSGDFDYRKITTKHIRSGV 123 + + Y + + + + + D+ +++ +R+ + Sbjct: 8 EIWAHYLA--KEQGRSPATVREYLKDVRLLRSWLDAEDKPQHLRGRDWGELSAADLRAFL 65 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDM-- 179 + +P + + S R +++ VR + + + + PK T ED+ Sbjct: 66 AAADPSPRRFHRLVNSWRSFWRFLVRVQKLPGVQDITADLTTPKIPKRAPVKLTLEDVSK 125 Query: 180 ----QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGT 231 G + FL +GLR S+ ++ S K Sbjct: 126 LLEVVYRDKSPQRGLKNWCIVAFLYGTGLRISEMLAMKFADIEYQDGSPVAVRVIGKGDK 185 Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA------------TQFSIWFKAKATK 279 V L L ++T + A + Sbjct: 186 ERRVPLSPTAQGALMRWLRERKTHGNPVTPWVWSPLSGKRYGQQMQARTIGKMLDTAAER 245 Query: 280 AGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AG++ S H +R AT + G T E+ G + + Y + R Sbjct: 246 AGLDPATVSPHKLRHTFATTLLNNGRTLDEIKELLGHENIQTTMIYAQTDTRR 298 >gi|301067092|ref|YP_003789115.1| phage integrase:phage integrase, N-terminal SAM-like protein [Lactobacillus casei str. Zhang] gi|300439499|gb|ADK19265.1| Phage integrase:Phage integrase, N-terminal SAM-like protein [Lactobacillus casei str. Zhang] Length = 360 Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats. Identities = 40/337 (11%), Positives = 92/337 (27%), Gaps = 29/337 (8%) Query: 17 RHGKIIYY---FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 + GK+ Y ++ G+ +L A ++A + I + TL Sbjct: 6 KRGKVWQYEISYKDLDGKFKKLRKSGFPRKSDAELAA-SQVKSIYLDIKQYQAGAITLSE 64 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--SRKHTPS 131 + S++ + I +E+ I + G R +T + + ++ H P Sbjct: 65 YFDRWIHLYKQNSVSSVTFIKYENTLSHIQQLFGGVLLRDLTRTLYQERLNVFAQNHAPR 124 Query: 132 SAIQFLTSMRV-LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 + F +R L + ++ + R + + + Sbjct: 125 TVAAFHKQIRAALLDAVDERIIHLDPTRKAIISGRSLPLTKRALDYREWYRLVRGLDTLN 184 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK------L 244 ++ +GLR ++ + + I KT + Sbjct: 185 TEQMIIYIAAVTGLRYAEVLGLTERDIDFGHAEISVNKTWDYKYHTGFKKTKNTASVRTI 244 Query: 245 LAMTPIGKETFFINNDKQKMNATQ--------------FSIWFKAKATKAGVNK-SAHGV 289 + + + + K G+ + + HG+ Sbjct: 245 VLDPVSLSKLRHFLKVNSPQTSNTAIFAPDGHAPVSAEINKILTQKLESLGLPRVTFHGL 304 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAE-TYTKG 325 R A+I G + + G + + TY Sbjct: 305 RHTHASILLYQGVSVLSVSKRLGHSNITTTQATYLHV 341 >gi|323486023|ref|ZP_08091354.1| phage integrase [Clostridium symbiosum WAL-14163] gi|323400590|gb|EGA92957.1| phage integrase [Clostridium symbiosum WAL-14163] Length = 359 Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats. Identities = 47/346 (13%), Positives = 96/346 (27%), Gaps = 42/346 (12%) Query: 12 TKERTRHGKIIYYF------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65 K + GK ++Y G + I Y + I Sbjct: 4 YKYTLKSGKTLWYANFYYTDWTGEKKHICKRGFKTQREAKDYERSFLDQQSSSSDILFSS 63 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124 L++ Y + L + + D +++ G I T +R Sbjct: 64 --------LVANYLEDMEHR-LKPTTMENKRFIIDTKLLPYFGKQKICDIDTIKVRKWQN 114 Query: 125 SR------KHTPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 P S T + + +AV + +NPC + + Sbjct: 115 ELISYRDDDGKPFSQTYLKTVNNQLSAIMNYAVSHYRLPVNPCRAAGSMGKSKADEMNIW 174 Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---- 231 + + S S +LAF+ L Y+G+R + + ++ + Sbjct: 175 TQKEYERFSNAISKSSMKLAFDILFYTGMRSGELLALTPADILSSKRIDINKNYAKIKGE 234 Query: 232 -----------IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280 + +PD + + T K + + Sbjct: 235 ELFLEPKTPKAKRCISIPDFLYDDIQEYISKLYGIGNGDRIFYFQKTALEKEMKRVSERI 294 Query: 281 GV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 G+ H +R A++ + G T E+ G +++ +TY+ Sbjct: 295 GLKPIRVHDLRHSHASMLIELGFTPLEIAERLGHESIKTTLDTYSH 340 >gi|329849596|ref|ZP_08264442.1| phage integrase family protein [Asticcacaulis biprosthecum C19] gi|328841507|gb|EGF91077.1| phage integrase family protein [Asticcacaulis biprosthecum C19] Length = 430 Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats. Identities = 47/386 (12%), Positives = 103/386 (26%), Gaps = 58/386 (15%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYP------HESTFIPAYMSALTGSTPK--- 57 +P V K++Y G Y L S Sbjct: 37 MPSGVKVY-----KVVYRANGGGRGETPKEYTIGQHGVFTPEEARKEAERLLSSVRLGTD 91 Query: 58 REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRIS--FESYFDQIIRKSGDFDYRKIT 115 + + ++K T+ L Y + ++ S + I G ++ Sbjct: 92 PQDAKAQKRKEMTVAELCDFYLEEGTTTK-KASTLKSDGYR-INRHIKPLLGKLKISEVN 149 Query: 116 TKHIRSGVESR--------------------------------KHTPSSAIQFLTSMRVL 143 + HI + + +A + + ++ + Sbjct: 150 SSHIERFLRDVAAGKHGGRKPSKVEAKRTGLTAETRGRTDSNVRGGKGTATRTVITLSGI 209 Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRP--WTKEDMQQFKSFWSEGSQPRLAFEFLLY 201 F +AV+++ + +PC VE K + + Q + L+ Sbjct: 210 FTFAVKRKLRSDHPCRGVETYKAGKSERHLSLEELKRLGQVMDLSHWNATAVAIIRCLIL 269 Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261 +G R + + + +K + T V L + Sbjct: 270 TGCRKGEIEHLRRDAVDFSNHFLKLSDSKTGPKVVPVGLPALELLRPYVNASVKSEFVFP 329 Query: 262 QKMNAT----QFSIWFKAKATKAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTV 316 ++A + A + K+ H +R A+++ + G T + G + Sbjct: 330 SAVDANKPFIGTPKIWTQIKLAADLPKTTLHDLRHTFASLAIEDGKTLPIIGKILGHSDI 389 Query: 317 DQAETYTKGADR-IRLGIKNSRRISS 341 E Y D R + +++ Sbjct: 390 KTTERYAHLTDTSARRAANDISVLAA 415 >gi|229491429|ref|ZP_04385253.1| site-specific tyrosine recombinase XerC [Rhodococcus erythropolis SK121] gi|229321714|gb|EEN87511.1| site-specific tyrosine recombinase XerC [Rhodococcus erythropolis SK121] Length = 308 Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats. Identities = 39/293 (13%), Positives = 90/293 (30%), Gaps = 30/293 (10%) Query: 68 PTTLKWLISEYRKSAHW-GSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSG 122 P +L + Y + + ++ ++ + S + D ++ +RS Sbjct: 6 PASLSVHLDAYAEHLRLSRGRSEHTIRAYVGDARALLTHFSAGSENADLDRLDLSVMRSW 65 Query: 123 ---VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + ++ + +S R W + ++++P + P + + Sbjct: 66 LAAQNAVGTARTTVARRASSARGFTAWLAQTGRISVDPGTRLAAPPARRTLPTVLRQSQA 125 Query: 180 QQFKSFWSEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTG 230 G + RL E L +G+R + C V+ + + ++ K Sbjct: 126 LDAMDAAESGAQQQEPLALRDRLIVELLYSTGIRVGELCGLDVESVDADRRLLRVLGKGN 185 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQK-----------MNATQFSIWFKAKATK 279 +V L ++ + S+ + A Sbjct: 186 KERSVPYGLPAESALNGWLEHGRPALCSDRSGRALLLGVRGGRLDQRQARSVVHETMAAI 245 Query: 280 AG-VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330 G + HG+R +AT + GA + G ++ + YT +R+R Sbjct: 246 PGAPDMGPHGLRHSAATHLLEGGADLRVVQELLGHASLATTQLYTHVSVERLR 298 >gi|255690107|ref|ZP_05413782.1| mobilizable transposon, int protein [Bacteroides finegoldii DSM 17565] gi|260624389|gb|EEX47260.1| mobilizable transposon, int protein [Bacteroides finegoldii DSM 17565] Length = 429 Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats. Identities = 40/339 (11%), Positives = 89/339 (26%), Gaps = 27/339 (7%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHEST---FIPAYMSALTGSTP--------KREYIN 62 GK Y ++ I + F + E Sbjct: 63 RTLADGKAYYRPKRDANGIILCRSQKDQEACIFADKVRDLRQHEYDNQSLYTDSEAEQAA 122 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY--RKITTKHIR 120 + E K + + + ++++ + + I I Sbjct: 123 QNERSKCDFIKYFEE-LKDKRHKNSSKSIQVNWNRELALLKLYTDGKPLLFGSIDLNLIE 181 Query: 121 SGVESRKHTP-----------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169 + + P ++A + + + + A Y+ I+ V+ + Sbjct: 182 DYKDYLINAPQGGSKTGTISANTASTYFSIFKAGLRQAFIDGYLTIDLAAKVKNIYYEES 241 Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229 T E++ Q + + + A F +GLR SD + + + + + T Sbjct: 242 QREYLTLEELNQLAATPCDSEILKRAALFSALTGLRHSDIKQLKWRDIVKDKEHYQLHFT 301 Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287 + + + + + K +G+ K + H Sbjct: 302 QQKTKGVEYMPISDQAYSLCGERGDADRLVFEGLQDPSWINRPVKRWVEASGITKHITFH 361 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 R AT+ G + + G K V + Y K Sbjct: 362 CFRHTYATLQLTNGTDIYTVSKMLGHKKVTTTQIYAKIV 400 >gi|220926098|ref|YP_002501400.1| integrase family protein [Methylobacterium nodulans ORS 2060] gi|219950705|gb|ACL61097.1| integrase family protein [Methylobacterium nodulans ORS 2060] Length = 344 Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats. Identities = 59/345 (17%), Positives = 115/345 (33%), Gaps = 24/345 (6%) Query: 12 TKERTRHGKI-IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 +++ G+I YY+ + G R+ + P F+ ++ +A + T Sbjct: 11 VRKKLATGEIATYYYHRPTGIRL-VGEPGTPEFLASFQAA--------AKSMTQTHGAGT 61 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY----RKITTKHIRSGVESR 126 + WLI +Y S W LA +++ + K G + T + Sbjct: 62 VAWLIRQYCDSPQWKKLAASTQEIGRLNLKAVEDKWGATPLEHAQSQRTRPLYLRWHDKM 121 Query: 127 KHT-PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 T P +A L+++ + W V + + NP + ER + + W E + F Sbjct: 122 AATHPRAADAKLSALARVLSWGVDRGLITNNPVATFERAYKADRAEKIWLPEHVAAFNKA 181 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 S + L +G R D + S++ K+G + + L Sbjct: 182 ASPELRLALLLALH--TGQRQGDLLQLPWSGYDGTAVSLRQGKSGRKVWIPATRALRAEL 239 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303 P T D + F+ + + + + H +R + T+ ++ G+T Sbjct: 240 DAAPRRAVTILTKPDGESWTKDAFTWAWGRAFEASEIKDDLHFHDLRGTAVTMLSEVGST 299 Query: 304 AHELMATYGWKTVDQ---AETYTKGADRIRLGIKNSRRISSVVDS 345 E+ G ETY A L ++ + Sbjct: 300 PQEIATITGHTVASVNRILETY--LARTRTLAESAIIKLDQHRRN 342 >gi|254303994|ref|ZP_04971352.1| bacteriophage integrase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148324186|gb|EDK89436.1| bacteriophage integrase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 370 Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats. Identities = 49/360 (13%), Positives = 115/360 (31%), Gaps = 41/360 (11%) Query: 18 HGKIIYY--FRKG---HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 +GK Y G +G++I+ + ++ + + N T Sbjct: 17 NGKPYYKASVTIGFDSNGKQIKKSFG---SYKKSIVLNKMDKAKYEAKNNMSSNSNITFG 73 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRK-SGDFDYRKITTKHIRSGVESR--KH 128 L ++ + ++ N+ +E+ + ++ + +IT +++ K Sbjct: 74 NLFKDWIFNFKKMDVSDNTFSVYETTYRLRLKDYNIANKRANQITLNDLQAYFNELQEKF 133 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-WTKEDMQQFKSFWS 187 T + + K+A+ Q + + C + PK K + ++K++ + + Sbjct: 134 TAGQIKRTYIHIHSCIKFAIFQGVMVRDYCGGIILPKEKKKEKYNVFSKQEQELILKTLN 193 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---------------- 231 + F Y+GLR + +++NI +I Q Sbjct: 194 KKDVVDCLIYFTFYTGLRLGEVLALRWDDIKDNILTINRQYNKRVEVIDIGKNNLTYEFK 253 Query: 232 -------IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN- 283 + LP + LL P + F N K + + + + Sbjct: 254 DLKTKNSKREIPLPIKILDLLKDLPKQFDLIFTINGK-PFDRKRPQRRMISLCKTLKIEY 312 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSV 342 +S H +R AT + + + G + YT +L + ++ ++ Sbjct: 313 RSFHSIRHSYATRLFELDIPIKTVQSLMGHSDMSTTMDIYTHVMKDKKL--EILDKLDNL 370 >gi|21674453|ref|NP_662518.1| phage/XerD family site-specific recombinase [Chlorobium tepidum TLS] gi|34222894|sp|Q8KBZ5|XERC_CHLTE RecName: Full=Tyrosine recombinase xerC gi|21647640|gb|AAM72860.1| site-specific recombinase, phage/XerD family [Chlorobium tepidum TLS] Length = 336 Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats. Identities = 39/315 (12%), Positives = 85/315 (26%), Gaps = 51/315 (16%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRKH 128 + E+ +++ + ++ + Q G + + + + R Sbjct: 19 WLGEFLVHLESTRNVSAKTVTAYTTDLIQFFEFLTDESGHQEMSAVDPELVEVADVRRFM 78 Query: 129 --------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT----- 175 P S + L S++ +++ + + +P V P+ + + + Sbjct: 79 GDLLDSGIKPRSIARKLASVKSFYRFLLDTGKIERSPLSLVLTPRLERKIPDFLSEEEAS 138 Query: 176 ---------------KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220 E Q+ E ++ R E L GLR S+ + Sbjct: 139 RLFDQLVLSDQESVGPEQGQKAAVQRFELARDRAVLELLYGCGLRLSEVTGLENADVDLV 198 Query: 221 IFS-IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN----------NDKQKMNATQF 269 T K V + + L + FF + Sbjct: 199 HGFLKVTGKGRKQRIVPFGEPAAEALRNYFEVRRNFFRILKEGAGETSKVFVTAKGRQIY 258 Query: 270 SIWFKAKATKAGVNKS------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + + + + H +R AT + GA + G + E YT Sbjct: 259 PMLVQRMTKRYLSPVTESARKNPHMLRHTFATHMLNGGADLKSVSEMLGHSNLTTTELYT 318 Query: 324 KGA-DRIRLGIKNSR 337 +R+R + Sbjct: 319 HVTFNRLRDAYTKAH 333 >gi|121997992|ref|YP_001002779.1| tyrosine recombinase XerC [Halorhodospira halophila SL1] gi|121589397|gb|ABM61977.1| tyrosine recombinase XerC subunit [Halorhodospira halophila SL1] Length = 304 Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats. Identities = 44/300 (14%), Positives = 95/300 (31%), Gaps = 27/300 (9%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSGVESRKHT 129 + + + LA +R + D D + +T +R+ V ++ Sbjct: 5 WLERFDRHLASERRLAEPTRRRYRQDLDAFAAFCTDRGLASWAAVTHDVVRAWVAHQRRR 64 Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + + L ++R +++ +R+ VA +P V P+ + +++ Sbjct: 65 GLAGRTLGRQLAALRSFYRFLIREGAVAADPAAEVRPPQTRRRLPGTLDPDEVAGLLDGA 124 Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDG 240 G + +E + SGLR S+ + L ++ K V + Sbjct: 125 DPGDPLQARDAALYELIYSSGLRLSEVIGLNMMDLDRRDGLVRVLRGKGAKDRVVPVGRQ 184 Query: 241 FMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290 ++ L + + F+ ++ A + A GV + H +R Sbjct: 185 ALRALDAWLRHRPAWASAEETAIFVGRHGGRLGARTVQRRLQRLAHLRGVQRRVHPHMLR 244 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG---IKNSRRISSVVDSDD 347 AT ++ + G + + YT D L + R D D+ Sbjct: 245 HSFATHMLESSGDLRAIQELLGHADISTTQVYTH-LDFQHLAQVYDQAHPRARRRKDPDN 303 >gi|313901872|ref|ZP_07835292.1| tyrosine recombinase XerD subunit [Thermaerobacter subterraneus DSM 13965] gi|313467865|gb|EFR63359.1| tyrosine recombinase XerD subunit [Thermaerobacter subterraneus DSM 13965] Length = 321 Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats. Identities = 41/282 (14%), Positives = 93/282 (32%), Gaps = 23/282 (8%) Query: 66 KKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY--RKITTKHIRSG 122 + ++Y + LA ++ ++ + +T I + Sbjct: 8 AATRAWQEATADYLEILRVERGLAAHTLAAYRRDLADFAAFAAARQVEPAGVTRPLILAY 67 Query: 123 VESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + + ++A + L ++R F++ + V +P + P+ R +++ Sbjct: 68 LHQLERAGRSRATAARRLAALRGFFRYLASEGKVEHDPAEGMATPRGGRPLPRVLAVDEV 127 Query: 180 QQFK----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIIT 234 ++ G + R E L +GLR S+ + L + ++ + G Sbjct: 128 ERVLELPQPASPAGLRDRAVLELLYATGLRVSELVGLDLDDLLLDHGLLRCRGKGGKERV 187 Query: 235 VELPDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284 V + ++ G+ F+N +++ + A +AGV + Sbjct: 188 VPVAAPAVEATRQYLARGRPALARRPGQRALFLNQRGGRLSRQWVWHLLRRAARRAGVPR 247 Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 S H +R AT GA + G + + YT Sbjct: 248 AVSPHTLRHSFATHLLAGGADLRAVQELLGHADISTTQIYTH 289 >gi|253575352|ref|ZP_04852690.1| phage integrase [Paenibacillus sp. oral taxon 786 str. D14] gi|251845349|gb|EES73359.1| phage integrase [Paenibacillus sp. oral taxon 786 str. D14] Length = 380 Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats. Identities = 31/277 (11%), Positives = 84/277 (30%), Gaps = 32/277 (11%) Query: 79 RKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-----------------YRKITTKHIRS 121 + ++ + ++ + + ++ D T+ Sbjct: 90 LTTLKLKGYSLKTSKAYRGHVRRYLQNLADHLKMKSPGTLKDEKMTSAIIDSSRTQQYAL 149 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + + H+P+ Q ++++R + + + + + RP+++ + +++++ + Sbjct: 150 QLLEQGHSPAYVNQAISALR----FLAVEVFKQPSEQMKYIRPQKEKKLPYVLSEQEVLR 205 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPD 239 + + R SGLR S+ R V + ++ K L Sbjct: 206 VIQAPT-NLKHRTMLYLAYASGLRVSEVVRLKVTDIDPERGILRVRQGKGKKDRHTLLSQ 264 Query: 240 GFMKLLAMTP------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291 ++ F + ++ F+ +G+ K H +R Sbjct: 265 TAWDMIQKYVEAERLSNSMWLFPGQHSGSHLHERSLQKVFQEALQTSGIRKQVGIHVLRH 324 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 AT + G + G E YT + + Sbjct: 325 SFATHLLENGTDLRYIQELLGHANPSTTERYTHVSTK 361 >gi|331090722|ref|ZP_08339570.1| hypothetical protein HMPREF9477_00213 [Lachnospiraceae bacterium 2_1_46FAA] gi|330399991|gb|EGG79647.1| hypothetical protein HMPREF9477_00213 [Lachnospiraceae bacterium 2_1_46FAA] Length = 283 Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats. Identities = 35/275 (12%), Positives = 87/275 (31%), Gaps = 18/275 (6%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--- 128 + + + ++ +L S +++Y ++ ++T + +R+ + ++K Sbjct: 3 EKYLEQLEEAGKIRNLKERSINCYKNYVSYFLKYQA-KPPEELTCQDVRNFLLAKKEEGL 61 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 ++ + +S+R ++ + I + D + Sbjct: 62 KATTLNLYNSSIRFFYR-----NVLHILWDDITVPRMILEHKLPTVLTVDEIDRLLEAVD 116 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLA 246 + R F + SG+R S+ + N ++ K L + +L Sbjct: 117 DIKYRAMFATMYSSGMRVSEVIHLHYDDISRSNMQIHVRDTKNRMDRYTILSKRCLDILT 176 Query: 247 MTPIGKETFFINNDKQKMNATQFS-----IWFKAKATKAGVNK--SAHGVRKFSATISAD 299 K K + + + A + K + H +R AT + Sbjct: 177 QYWFEKGRPRGILFPNKFTGNYLTVSTLEQVMRRAVSDAELPKKATPHCLRHSFATHLME 236 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334 G + A G + E Y +++ +GI+ Sbjct: 237 QGVERQNIQALLGHRDPKSTEVYLHVSNKSLMGIQ 271 >gi|319788864|ref|YP_004090179.1| integrase family protein [Ruminococcus albus 7] gi|315450731|gb|ADU24293.1| integrase family protein [Ruminococcus albus 7] Length = 359 Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats. Identities = 54/354 (15%), Positives = 120/354 (33%), Gaps = 40/354 (11%) Query: 17 RHGKIIYYFRKG--HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 + G+ G G+R + T A + + + T+K L Sbjct: 10 KDGRWETRVSLGVVDGKRQT-KSFYGRTKEEAEGKMMAEVMNGMSFQITG----LTVKAL 64 Query: 75 ISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 E+ S + + V+++ ++ + F I+ GD +IT+K + ++++ SA Sbjct: 65 CMEWL-SVNSHRVKVSTQANYMTKFEKHILPYFGDKMCYEITSKTVYGFIQAKLDEGLSA 123 Query: 134 ---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG- 189 L ++ +FK+A ++ ++ +V PK R TK++ ++ K + Sbjct: 124 GYVSNILVLLKTVFKYAQKEYHILNP-FDNVIMPKSTKSETRLLTKKEQKKLKEYLKSNV 182 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------------- 232 + L + GLR + C Q + ++ ++T Sbjct: 183 NTATLGISLAISMGLRIGEICGLTWQDIDFKCRTLTVRRTVQRIRVKGEAKKTKIVILPP 242 Query: 233 ------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KS 285 + +P +L E + +++ + + + G+ Sbjct: 243 KSKSSFREIPIPTSVFAMLKNLRSTPEHYILSDSTEPKEPRMMYYDYVEILKELGLPSVK 302 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKG-ADRIRLGIKNSR 337 H +R +A+ + +AG L G ++ Y DR R + Sbjct: 303 FHSLRHAAASNAIEAGFDVKTLSEVLGHSRIEMTMNLYVHSNMDRKRKLMDKLD 356 >gi|237714827|ref|ZP_04545308.1| site-specific recombinase [Bacteroides sp. D1] gi|262406900|ref|ZP_06083449.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294646188|ref|ZP_06723843.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294810609|ref|ZP_06769260.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] gi|229445152|gb|EEO50943.1| site-specific recombinase [Bacteroides sp. D1] gi|262355603|gb|EEZ04694.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292638483|gb|EFF56846.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294442202|gb|EFG11018.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] Length = 397 Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats. Identities = 61/392 (15%), Positives = 117/392 (29%), Gaps = 54/392 (13%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLP-------------------YPHESTFI 44 L+ P + ++ +G Y G IR E Sbjct: 9 KLKEPVRIRFKQLANGNQSIYLDYYTGDVIRKENYVGGKRQYEFLKLYLIPEKTREDKAK 68 Query: 45 PAYMSALTGSTPKREYINSPRKK------PTTLKWLISEYRKSAHWGSL---AVNSRISF 95 AL + + + + +I Y + S ++N + Sbjct: 69 NEATLALAKAIQSKRIVELQNDAHGFQNTNKSKANVID-YLMNMRSQSKERGSLNYEKTV 127 Query: 96 ESYFDQIIRKSGD-FDYRKITTKHIRSGVESRKH----------------TPSSAIQFLT 138 + ++ GD +R I + S V+ K + +S I + Sbjct: 128 GNTIRELKLFRGDYIAFRDIDKDFLNSFVDFLKQAKKASKFGLLKAGGVLSNNSVIAYYG 187 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKT---EGIRPWTKEDMQQFKSFWSEGSQPRLA 195 +R A ++ + +NP + + T E++++ + + A Sbjct: 188 VLRTAINRAYKEGIITVNPTKEFDFASKVKAEVSRREYLTIEELKRLIGTECKYEIMKQA 247 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254 F F GLR SD + LQ + I+ K + L P E Sbjct: 248 FLFSCLCGLRVSDIRKLKWNDLQKSGERIRIEIKMQKTKEPLYLPISDEALKWLPQQNEA 307 Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYG 312 + + + + A AG+ + S H R AT+ GA + + G Sbjct: 308 KGDDLIFPLTHEGTINKILQKWAKDAGIIKHISFHVARHTHATMMLTLGADLYTVSKLLG 367 Query: 313 WKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 K + + Y K D+ + + I ++ D Sbjct: 368 HKNIATTQIYAKIVDKKK--EEAISLIPNLTD 397 >gi|162448003|ref|YP_001621135.1| integrase/recombinase, XerD-like protein [Acholeplasma laidlawii PG-8A] gi|161986110|gb|ABX81759.1| integrase/recombinase, XerD-like protein [Acholeplasma laidlawii PG-8A] Length = 306 Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats. Identities = 35/287 (12%), Positives = 89/287 (31%), Gaps = 31/287 (10%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRK---------ITTKHIRSG 122 +IS+Y+ + + ++ IS+ + K + +I S Sbjct: 2 DIISDYKDYLIIEKNFSEHTAISYINDVKGFEDFLIKEGLAKDLLGARRPRLARNYI-SY 60 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT----KED 178 ++++ + + L+S++ + + + +E + N ++ PK Sbjct: 61 LDNQDFKKKTIARKLSSLKNFYNYLIFKELIEENIFSDIKAPKVAKTLPHIIDEEAINYL 120 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVEL 237 + G + + + L G+R S+ ++ + + I K + L Sbjct: 121 FDSIDTSKPLGYRNLVILDLLYSCGVRASELINLEIKDIYLSSGQILIHGKGKKDRYIIL 180 Query: 238 PDGFMKLLAMT-------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284 + ++ + ++ FIN + + +G Sbjct: 181 HEKLIEEIRHYLSFVRVTLLSKGDDTNQQKLFINYKGGPLTVRGLRVILNQMIKDSGETY 240 Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 H +R AT + GA + G + + + YT + Sbjct: 241 AIHPHMLRHAFATTMLNHGADLRVVQELLGHEHLKSTQIYTHVSKEQ 287 >gi|300215222|gb|ADJ79638.1| Phage integrase [Lactobacillus salivarius CECT 5713] Length = 381 Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats. Identities = 57/367 (15%), Positives = 111/367 (30%), Gaps = 51/367 (13%) Query: 11 VTKERTRHGKIIYYFR--------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62 + K + + +Y FR G R IR + + +Y Sbjct: 4 IIKYTNKDNETLYKFRFYAGLDELTGKQRYIRRQGFKSEKDAKTELLKIEYLVSTNQYFK 63 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRS 121 S + ++ E+ ++ ++ E + D KIT + + Sbjct: 64 SVKSGK--FGDVLDEWLALHK-ETVKASTWQFIELRANKHVRPYFKDMYVDKITLRQCQD 120 Query: 122 GVES-RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 V K P + + ++ ++ +A+R + NP L V +PK++ + Sbjct: 121 FVNKTFKVAPVAYVYSVSIVKNTLDYALRLGMIESNPMLYVIKPKKQANISDNHGNYYNK 180 Query: 181 QFKS-----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--- 232 + + F L YSG+R + L +I KT Sbjct: 181 DELKKFLDVAKNTNLKKYALFRLLAYSGMRIGECLALTWHDLDYKNNTIAINKTLARTNN 240 Query: 233 -------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT------------ 267 + L + +++L M + + + M++ Sbjct: 241 GIKIQTPKTKASNRVISLDNETIQVLKMWQLEQRKQLLKVGINAMDSKQLIFSNGKNSFI 300 Query: 268 ---QFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETY 322 + K A KAG++ + HG R AT+ +G ++ A G V Y Sbjct: 301 IVPTVRLAIKQIAKKAGIHSITTHGFRHTHATLLFASGLDIKQVQARLGHSNVQTTLNIY 360 Query: 323 TKGADRI 329 T Sbjct: 361 THAMKEK 367 >gi|227827993|ref|YP_002829773.1| integrase family protein [Sulfolobus islandicus M.14.25] gi|229585262|ref|YP_002843764.1| integrase family protein [Sulfolobus islandicus M.16.27] gi|238620221|ref|YP_002915047.1| integrase family protein [Sulfolobus islandicus M.16.4] gi|227459789|gb|ACP38475.1| integrase family protein [Sulfolobus islandicus M.14.25] gi|228020312|gb|ACP55719.1| integrase family protein [Sulfolobus islandicus M.16.27] gi|238381291|gb|ACR42379.1| integrase family protein [Sulfolobus islandicus M.16.4] Length = 291 Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats. Identities = 45/272 (16%), Positives = 91/272 (33%), Gaps = 30/272 (11%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV-------- 123 L + + + + + + + + D RK+T++ + + Sbjct: 12 GDLYNAFINALVLAGAGNGTIKLYSTAVKDFLDFI-NKDPRKVTSEDLNKWISNLLNREG 70 Query: 124 -------ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 E R+ + ++ ++R KW N + PK + + ++ + Sbjct: 71 KVKGDDVEKRRAKSVTIRYYIIAVRRFLKWL--------NVSVKPPIPKVRRKEVKALDE 122 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIIT 234 +Q+ + ++ +L LL +GLR ++ V+ + NN+ ++ K G Sbjct: 123 SQIQKVLNTCKR-TKDKLIIRLLLDTGLRANELLSVLVKDVDLENNMIRVRNTKNGEERV 181 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSA 294 V D +LL GK+ D K K + H +R A Sbjct: 182 VFFTDETKQLLRKYMKGKKLDEKLFDI---TYDALYRKLKRLGNKVEIELRPHILRHTFA 238 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGA 326 T+S G L G K + + YT Sbjct: 239 TLSLKRGINVITLQKLLGHKDIKTTQIYTHLV 270 >gi|307293405|ref|ZP_07573251.1| integrase family protein [Sphingobium chlorophenolicum L-1] gi|306881471|gb|EFN12687.1| integrase family protein [Sphingobium chlorophenolicum L-1] Length = 305 Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats. Identities = 38/296 (12%), Positives = 83/296 (28%), Gaps = 30/296 (10%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-T 129 LI + + + N+ +++ + G T I + Sbjct: 5 AALIDRFLEMMAAERGASRNTLLAYRADLTGAGEIVGG--LSGATKDRIADLTMAWAELA 62 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-------- 181 SS + +++R + + + NP ++ RP + + + +++ Sbjct: 63 ASSVARKSSALRAFYAFLEEEGLRPDNPSAALPRPVTRRSLPKILSTQEVDSLFALIAGK 122 Query: 182 --FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239 + + E L SGLR ++ + L ++ + + G + Sbjct: 123 LAVEHPSPLDLRLSALIELLYGSGLRATELVSLPRRALASDRPFLILKGKGGRERLVPIS 182 Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-------NKSAHGVRKF 292 + + + I S H +R Sbjct: 183 DRARAAVAVWLHHVPADSLWLFPSGKSHVSRIRLYQMVKALAAAAGIAPERVSPHVLRHA 242 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 AT + GA L + G + + YT R R+ +V+S P Sbjct: 243 FATHLLEGGADLRALQSMLGHADIGTTQIYTHVDSR---------RLVELVNSRHP 289 >gi|220905498|ref|YP_002480810.1| integrase family protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869797|gb|ACL50132.1| integrase family protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 340 Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats. Identities = 40/332 (12%), Positives = 100/332 (30%), Gaps = 14/332 (4%) Query: 16 TRHGKIIYYFRKGH---GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 T+ G+ +R ++ L ++ A + + L Sbjct: 6 TKSGRWYVQYRVPGLSSPKKDYLGNNPDAQEQALKRQAEIATGHIYTVAALSNFRQIYLD 65 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH-TP 130 L Y + + + + + +I+ I + Sbjct: 66 DLGQCYLDFLKIKDKTTSWIGTLKYLLNEHFLPVLCHSPVDQISFTDILKVAARFADKSA 125 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 ++ +++ S+ V+F++ +R E +P ++ KR+ + T +D+ + + + Sbjct: 126 ATQNRYMDSLHVIFRFGIRHELTTNDPMAHWQK-KREPQRNMLLTIKDLAKIYAAAPDHL 184 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---TIITVELPDGFMKLLAM 247 + + E+ L + S+ Q + + I+ + T + + L F L Sbjct: 185 KWIIEVEWALGTRPGKSELFSLCWQDVDFDNNFIRVRGTKTKGSDRIIPLTPEFKARLLD 244 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAH 305 ++ +I + FK KA ++ + +R A+ G Sbjct: 245 KRDVAQSPYIIEVNGRG-IQHCRRAFKTALEKAKIDYPVRLYDIRHLFASTMLANGGDLK 303 Query: 306 ELMATYGWKTVDQAE-TYTKGAD-RIRLGIKN 335 + G + TY + Sbjct: 304 AVSKLLGHSSTRMTADTYYHELQGEKERALSA 335 >gi|227830730|ref|YP_002832510.1| integrase [Sulfolobus islandicus L.S.2.15] gi|229581710|ref|YP_002840109.1| integrase family protein [Sulfolobus islandicus Y.N.15.51] gi|284998243|ref|YP_003420011.1| phage integrase family protein [Sulfolobus islandicus L.D.8.5] gi|227457178|gb|ACP35865.1| integrase family protein [Sulfolobus islandicus L.S.2.15] gi|228012426|gb|ACP48187.1| integrase family protein [Sulfolobus islandicus Y.N.15.51] gi|284446139|gb|ADB87641.1| phage integrase family protein [Sulfolobus islandicus L.D.8.5] Length = 291 Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats. Identities = 45/272 (16%), Positives = 91/272 (33%), Gaps = 30/272 (11%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV-------- 123 L + + + + + + + + D RK+T++ + + Sbjct: 12 GDLYNAFINALVLAGAGNGTIKLYSTAVKDFLDFI-NKDPRKVTSEDLNKWISNLLNREG 70 Query: 124 -------ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 E R+ + ++ ++R KW N + PK + + ++ + Sbjct: 71 KVKGDEVEKRRAKSVTIRYYIIAVRRFLKWL--------NVSVKPPIPKVRRKEVKALDE 122 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIIT 234 +Q+ + ++ +L LL +GLR ++ V+ + NN+ ++ K G Sbjct: 123 SQIQKVLNTCKR-TKDKLIIRLLLDTGLRANELLSVLVKDVDLENNMIRVRNTKNGEERV 181 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSA 294 V D +LL GK+ D K K + H +R A Sbjct: 182 VFFTDETKQLLRKYMKGKKLDEKLFDI---TYDALYRKLKRLGNKVEIELRPHILRHTFA 238 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGA 326 T+S G L G K + + YT Sbjct: 239 TLSLKRGINVITLQKLLGHKDIKTTQIYTHLV 270 >gi|109302897|ref|YP_654712.1| Int [Pasteurella phage F108] gi|73918061|gb|AAZ93639.1| Int [Pasteurella phage F108] Length = 340 Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats. Identities = 51/360 (14%), Positives = 102/360 (28%), Gaps = 46/360 (12%) Query: 10 FVTKERTRHGKIIYYFRKGHGRRIRL---PYPHESTFIPAYMSALTGSTPKREYINSPRK 66 V K+ T+ GK + F G+R+R + F + + + S Sbjct: 2 GVRKDSTKGGKWLAEF-YHDGKRVRKWFVTRGEATRFFNQEQAKNATQSENVRVVLSNDL 60 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 P L E+ + +L + + + GD K TT+ + R Sbjct: 61 AP--LSHYAHEWYELYG-QTLNDG--QARLNKLLNLCSHLGDPPANKFTTQDFAEYRKKR 115 Query: 127 -----------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 S+ + +R +F + + LS ++ E + Sbjct: 116 LAGKFSADPKRPPKQSTVNREHAYLRAVFNELKSLGKWSGDNPLSEISLFKENETELAFL 175 Query: 176 KEDMQQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 D + + S+ + L L +G R S++ + + + K+G Sbjct: 176 FGDEIRRLIDECDNSRNKDLGLITRICLATGARWSEAEQLKQAQVIPYKITYINTKSGKN 235 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS----AHG 288 T+ + +L F+ +AG++ H Sbjct: 236 RTIPISPELYNMLPQRRGRLFGDAYE-------------AFENAVDRAGIDLPKGQLTHV 282 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 +R A+ G L G T++ Y + S+ +P Sbjct: 283 LRHTFASHFMMNGGNILVLKEILGHSTIEMTMKYAH------FAPSHLESAVSLNPLTNP 336 >gi|302345845|ref|YP_003814198.1| site-specific recombinase, phage integrase family [Prevotella melaninogenica ATCC 25845] gi|302149964|gb|ADK96226.1| site-specific recombinase, phage integrase family [Prevotella melaninogenica ATCC 25845] Length = 418 Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats. Identities = 40/308 (12%), Positives = 87/308 (28%), Gaps = 16/308 (5%) Query: 45 PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR 104 Y +A S + + + + +++ + ++E + Sbjct: 104 REYDNASLYSDTETAQAEQKERLQQNFIKYFDK-VADKRHRNSSLSIQTNWERVHVLLKM 162 Query: 105 KSGDFDY-RKITTKHIRSGVESRKHTP-----------SSAIQFLTSMRVLFKWAVRQEY 152 +GD +I + P ++A + + + K A Y Sbjct: 163 FAGDTLLFSQIDNRLAEDFKFFLLSAPCGGSKKGTISRNTASTYFSIFKAALKQAFIDGY 222 Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212 + I+ ++ + + T +++ + + E + A F +GLR D + Sbjct: 223 LTIDLSAKIKGIQEQESRREYLTLDELNKLANTPCERDVLKRAALFSALTGLRHCDIQKL 282 Query: 213 GVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272 + K T + + N + S Sbjct: 283 KWDEIAIEGNQAKLLFTQKKTKGVEYMPISEQAFKLCGEPRQPEQLVFEGLPNPSWISRP 342 Query: 273 FKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 +A KAG+ + S H R AT+ G + + G V + Y K D + Sbjct: 343 LRAWIEKAGIQKHLSFHCFRHTFATLQLANGTDIYTVSKMLGHTNVKTTQVYAKVVDEKK 402 Query: 331 -LGIKNSR 337 + Sbjct: 403 NKAANAIQ 410 >gi|148652162|ref|YP_001279255.1| phage integrase family protein [Psychrobacter sp. PRwf-1] gi|148571246|gb|ABQ93305.1| tyrosine recombinase XerC subunit [Psychrobacter sp. PRwf-1] Length = 341 Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats. Identities = 36/309 (11%), Positives = 87/309 (28%), Gaps = 36/309 (11%) Query: 53 GSTPKREYINSPRKKPTTLKWL------ISEYRKSAHWGSLAVNSRISFESYFDQIIRKS 106 ++ + L + ++ ++ ++ ++ + Q+ Sbjct: 9 QQLENKKQLEDSLATKPVFAELEALLPPVEQWLSELSVRQMSAHTIDAYYAGLYQLACFL 68 Query: 107 GDFDYRKIT------TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 K+I +++ SS Q L+++R + W + Q INP Sbjct: 69 AQAQLNWTRCDKRQLAKYIAKRLDTDALAISSVQQELSAIRHFYSWLIEQGQARINPTTG 128 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGS--------QPRLAFEFLLYSGLRCSDSCRA 212 + + + + Q + + + FE L SGLR + Sbjct: 129 YQLKRAPRPLPSIADGDLIAQLLEQPMPDTPEQARLWIRDKAMFELLYSSGLRVGELVGL 188 Query: 213 GVQHLQNNIFSIKTQKT-----GTIITVELPDGFMKLLAMTPIGKETFFIN--------- 258 V L+ + + + V + +K + + + Sbjct: 189 NVADLRIDAKGERGEVRVTGKGNKTRLVPVGRQALKAINRYLPHRNLWEERGDRALFISE 248 Query: 259 NDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTV 316 ++ K A +AG+ ++ H +R A+ + G + Sbjct: 249 KHGTRLTTRAVQQRLKVAAARAGIAQNMYPHLLRHCFASHMLSGSGDLRAVQEMLGHSDI 308 Query: 317 DQAETYTKG 325 + YT Sbjct: 309 STTQIYTHV 317 >gi|30248355|ref|NP_840425.1| phage integrase domain/SAM domain-containing protein [Nitrosomonas europaea ATCC 19718] gi|30138241|emb|CAD84249.1| Phage integrase:Phage integrase N-terminal SAM-like domain [Nitrosomonas europaea ATCC 19718] Length = 321 Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats. Identities = 41/291 (14%), Positives = 99/291 (34%), Gaps = 33/291 (11%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--------------DFDYRKITTKH 118 L+SEY SL++ ++ S+ ++ D ++ + Sbjct: 15 LLSEYLAYLASTRSLSLLTQHSYRRDLVALVCCIAAQHQSEHENGHEVTDASLTRLHSHD 74 Query: 119 IRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 IR + H + S + L++ R +++ +R + NPC + PK + + Sbjct: 75 IRHFIAHLHHGGLSGRSLARMLSAWRGFYRYLMRHHHHTENPCQDIRVPKSPRKLPHALS 134 Query: 176 KEDMQQFK---SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GT 231 ++ Q + ++ FE SGLR ++ R + + ++ Sbjct: 135 PDEAAQLLAFDPADALATRDLAMFELFYSSGLRLAELTRLQPTDIDFSEGIVRVTGKGSK 194 Query: 232 IITVELPDGFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGVN 283 V + + ++ L + + F++ Q+++ ++ +A ++ Sbjct: 195 TRIVPVGEPALRALQAWLPLRSAWLTSGETALFLSRHGQRIHPRTIAVRLHQRARLQNLD 254 Query: 284 --KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R A+ + + G ++ + YT D L Sbjct: 255 DRVHPHALRHSFASHLLQSSGDLRAVQEMLGHSSIRSTQVYTH-LDFQHLA 304 >gi|254228199|ref|ZP_04921628.1| Integrase [Vibrio sp. Ex25] gi|262394055|ref|YP_003285909.1| integrase [Vibrio sp. Ex25] gi|151939272|gb|EDN58101.1| Integrase [Vibrio sp. Ex25] gi|262337649|gb|ACY51444.1| integrase [Vibrio sp. Ex25] Length = 401 Score = 109 bits (272), Expect = 8e-22, Method: Composition-based stats. Identities = 43/357 (12%), Positives = 92/357 (25%), Gaps = 44/357 (12%) Query: 20 KIIYYFRKGHGRRIRL---PYPHESTFIPAYMSALTGSTPKREYINSPR--------KKP 68 K +Y+R +R L G + + R +K Sbjct: 41 KYYFYYRLNGKQRNYLLGAATSLTPAQARDLAKEKAGLVAGGQDVQETRFEAKREALRKT 100 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG---VES 125 TL+ + E+ +S +L + + +IT ++ Sbjct: 101 LTLERFLDEHYESY-LQALNPKTAKQSFMCIKSSFKHLAHKPMSEITAWDVQQWVSEKRK 159 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE-------- 177 S+ ++ F AV +++ + SV+ K + IR + Sbjct: 160 LGRASSTISYAYNRLKAAFNRAVEWDFIDSHTLSSVKIVKEDDQRIRYLSTAEETALLDS 219 Query: 178 --------DMQQFKSFWSEGSQPRLAF------EFLLYSGLRCSDSCRAGVQHLQNNIFS 223 Q ++ E + R A + +G+R + +H+ Sbjct: 220 LKVRDIRLRENQKQAHRQEVPKLRYADYLEPLIVMAINTGMRKGEMLSLCWEHINFENRY 279 Query: 224 IKTQKTG----TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA--TQFSIWFKAKA 277 + T+ L D +L + + ++ Sbjct: 280 LTITSANAKSKKRRTIPLNDTVFSMLNDWKAQNYSEESGLVFTSNGKPIDTYQYQWEQLL 339 Query: 278 TKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 A + N H + A+ A + + G + Y A + Sbjct: 340 KDANIQNFRFHDLCHHFASKLVMAAVDLNTVRELLGHADLKMTLRYAHLAPEHKASA 396 >gi|116625064|ref|YP_827220.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] gi|116228226|gb|ABJ86935.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] Length = 406 Score = 109 bits (272), Expect = 8e-22, Method: Composition-based stats. Identities = 56/387 (14%), Positives = 108/387 (27%), Gaps = 48/387 (12%) Query: 2 TPSLRLPPFVTKERTRHGKIIYYF--RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE 59 P R + R G+R R+ + LT K++ Sbjct: 1 MPRKNRSDGEGSVFQRGDGWVAQVSIRDREGKRHRI--TRSAATQNEARKLLTKLKGKQD 58 Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKI--TT 116 TL+ ++E+ + + A + S+ + G ++ Sbjct: 59 SHTLIIGGRGTLRDWLNEWLELFIKPNRAPKTYKSYHDLLKQHVPENVGSIPLSRVAQQP 118 Query: 117 KHIRSGVESRKHTP--SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 + ++ S ++ +R AV+ + + NP L + + + Sbjct: 119 ETFQALFVSIAQDGLGRTSQLLRAVLRSSLNRAVKLKRLESNPILGTDAVGFVSGETAVF 178 Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH---------LQNNIFSIK 225 + E +QF +EG + F L GLR + + ++ + IK Sbjct: 179 SGEQGKQFL-KTAEGERLGALFVTALSLGLRKGELTGLREEDLDLEGRTIEVRRQLQWIK 237 Query: 226 TQKTGTIIT------------------------VELPDGFMKLLAMTPIGKETFFINNDK 261 L + LA K++ ++ Sbjct: 238 LPGDEEGRWVERAPKKGSQRTLPITETIYRFVIRHLAQRNAEALAAGESWKDSGYLFVSP 297 Query: 262 Q--KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 ++ S F AGV + H R T+ GA + G + Sbjct: 298 NGAPLHERNISEAFHLACDHAGVPRIRFHDTRHSCGTLLHLQGADPFIIQKVLGHSQLST 357 Query: 319 AETYTKGADRIRLGIKNSRRISSVVDS 345 YT I + R+ S+ DS Sbjct: 358 TRRYTHTP--IEVTRPALARLESLFDS 382 >gi|295110203|emb|CBL24156.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162] Length = 322 Score = 109 bits (272), Expect = 8e-22, Method: Composition-based stats. Identities = 38/277 (13%), Positives = 90/277 (32%), Gaps = 16/277 (5%) Query: 59 EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH 118 E S + P T + + + + + ++ + ++ + RKITT+ Sbjct: 34 EDTVSKVEVPNT--EFLKMFLDAKKIEGCSDRTLQYYKVTVEHLLSQI-KTSVRKITTEE 90 Query: 119 IRSGVESR----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 IR+ + K + + ++ F W ++Y+ +P + + + KT Sbjct: 91 IRAYLADYQKNSKCSNVTIDNIRRNISSFFSWLEEEDYILKSPMRRIHKIRTKTVVKSVI 150 Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTII 233 T E +++ + E + + L +G+R + + + + K Sbjct: 151 TDEGIEKLRDNCME-IRDLAIIDLLYSTGIRVGELVNLNIDDIDLEGRECVVYGKGDKER 209 Query: 234 TVELPDGFMKLLAMTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SA 286 V L ++ + ++ + I + K + + Sbjct: 210 RVYFDAKSKVHLMRYIAERKDANPALFVTLDAPHDRLKISGVEIRLRQLGRKLELERIHP 269 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 H R+ AT + D G ++ G +D Y Sbjct: 270 HKFRRTMATRAIDKGMPIEQVQKILGHSQIDTTMQYA 306 >gi|170076521|ref|YP_001733160.1| integrase/recombinase [Synechococcus sp. PCC 7002] gi|170079512|ref|YP_001736147.1| integrase/recombinase [Synechococcus sp. PCC 7002] gi|169887181|gb|ACB00892.1| integrase/recombinase [Synechococcus sp. PCC 7002] gi|169887383|gb|ACB01091.1| integrase/recombinase [Synechococcus sp. PCC 7002] Length = 289 Score = 109 bits (272), Expect = 8e-22, Method: Composition-based stats. Identities = 41/277 (14%), Positives = 89/277 (32%), Gaps = 14/277 (5%) Query: 58 REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117 TT ++ + + ++ ++ + +IT Sbjct: 8 EPITQGRLTTATTDNEILKRW-----ASQKSSATQKTYFYIVRNFMAAIA-KPLNQITLD 61 Query: 118 HIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + ++S + + ++ + +R LF + Y+ +NP +++PK I Sbjct: 62 DLLDWLDSLQWQSQNTRRNKIAVIRSLFGFCHATGYITLNPAKLLQQPKENDCRIERIIT 121 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS----IKTQKTGTI 232 + Q + ++ + L + L G+R S+ + K + Sbjct: 122 KPKVQAMAMNADTLRNELIIKTLYLLGVRVSELINIRWDDFIQTDDNGLKLKVMGKGDKV 181 Query: 233 ITVELP---DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGV 289 + +P ++ L + N+ K++ Q KA + GV S H + Sbjct: 182 RFIVVPTGLWDELEALRNDSAYVFSSRKGNNGSKLSRIQVYRVVKANGDRVGVQVSPHFL 241 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 R AT S G H L + G + Y + Sbjct: 242 RHSHATHSLKNGCDLHLLSESLGHGNIAITSRYLHAS 278 >gi|258654185|ref|YP_003203341.1| tyrosine recombinase XerD [Nakamurella multipartita DSM 44233] gi|258557410|gb|ACV80352.1| tyrosine recombinase XerD [Nakamurella multipartita DSM 44233] Length = 353 Score = 109 bits (272), Expect = 8e-22, Method: Composition-based stats. Identities = 47/331 (14%), Positives = 92/331 (27%), Gaps = 62/331 (18%) Query: 55 TPKREYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFD 110 P RE + SP + L + Y +A N+ +S+ ++ ++ G Sbjct: 4 NPAREAVASPVEPSPELVAALRGYLDHLVVERGVARNTVLSYRRDLNRYLQFLAAAGRTR 63 Query: 111 YRKITTKHIRSGVESRKHTP--------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162 +T + + + SSA + + + R ++ + + +P V Sbjct: 64 VADVTAADVSDFLVCLRTGADGRPPLAASSAARAVVAARGWHRFLLNEGTAEADPSRDVH 123 Query: 163 RPKRKTEGIRPWTKEDMQQFKSF-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215 P + E + + G + R E L +G R S+ V Sbjct: 124 PPTPARRLPKALPVEAIGRLLDAAGSADPDGPRGLRDRALLELLYATGARISEVVGLDVD 183 Query: 216 HL-------------------------QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250 + K V + ++ L + Sbjct: 184 DIDLGPGRLAGRSSTDPTDPTDPQVAPPITSVVRLHGKGAKERLVPVGSFALRALEAYLV 243 Query: 251 GKETF---------------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKF 292 F+N +++ A +AG+ S H +R Sbjct: 244 RGRPVLAAAGRGAGPARGALFLNIRGGRLSRQSAWQVLADAARRAGLPASGVSPHTLRHS 303 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYT 323 AT + GA + G +V + YT Sbjct: 304 FATHLLEGGADVRSVQELLGHASVTTTQIYT 334 >gi|17544771|ref|NP_518173.1| site-specific tyrosine recombinase XerC [Ralstonia solanacearum GMI1000] gi|34222938|sp|Q8Y3C8|XERC1_RALSO RecName: Full=Tyrosine recombinase xerC 1 gi|17427060|emb|CAD13580.1| probable tyrosine recombinase xerc 1 protein [Ralstonia solanacearum GMI1000] Length = 329 Score = 109 bits (272), Expect = 8e-22, Method: Composition-based stats. Identities = 47/298 (15%), Positives = 82/298 (27%), Gaps = 41/298 (13%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGVESRKH- 128 I Y + + L+ ++ S+ + R + D ++ HIR + Sbjct: 20 IGAYLDALKFERKLSQHTLASYARELAVLQQLGARFAAGIDLMRLQPHHIRRMMAQLHGG 79 Query: 129 --TPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + S + L++ R ++W R V NP + PK + + E Sbjct: 80 GLSGRSIARALSAWRGWYQWLALRDAAVTANPVDGIRAPKSPKRLPKALSVEQAVALMEQ 139 Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII-------- 233 E + R E GLR S+ ++H Q ++ + Sbjct: 140 LPGDDPEAVRDRAVNELFYSCGLRLSELVGLDLRHAQAGDYASASWLDLEAREVTVLGKG 199 Query: 234 --------------TVELPDGFMKLLAMTPIGKETFFINNDKQKMNA---TQFSIWFKAK 276 + LA E + Q K Sbjct: 200 NKRRTVPVGSKAAEALAAWLAVRPQLAQPDAAPEDAHALFLSARGKRLAQRQIQTRMKRN 259 Query: 277 ATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 A AGV H +R AT + + G ++ + YT D L Sbjct: 260 AIAAGVPADVHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYT-SLDFQHLA 316 >gi|257469562|ref|ZP_05633654.1| phage integrase family protein [Fusobacterium ulcerans ATCC 49185] gi|317063801|ref|ZP_07928286.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185] gi|313689477|gb|EFS26312.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185] Length = 355 Score = 109 bits (271), Expect = 8e-22, Method: Composition-based stats. Identities = 56/342 (16%), Positives = 111/342 (32%), Gaps = 40/342 (11%) Query: 14 ERTRHGKIIYYFRKGHGRR--IRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 ++T+ K ++Y+ G R Y + + S T Sbjct: 7 DKTKTWKAVFYYTNYKGERSQTTKRGFKTKKDAQEY--------EREFLLKSTFNLGMTF 58 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESR---- 126 + L Y + L ++ ++ + ++ + D IT +R+ + Sbjct: 59 QSLYDLYIEDMQPR-LREHTLLTKKKIIEKKILPFFKDMTLESITAVRVRAWQNTLLNGV 117 Query: 127 -----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-WTKEDMQ 180 ++ + + +F +AVR + NPC +K + WT E+ + Sbjct: 118 TRHNNPYSQTYIRTICNQLTAIFNYAVRFHSMRENPCHRAGTIGKKRAEEKNIWTPEEFE 177 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------- 232 +F + AF+ L ++GLR + ++ + +I K+ Sbjct: 178 KFVALIEHKIPSYTAFQILFWTGLRIGELLALSIKDIDFENKAIVVNKSYQRLGSRDVIT 237 Query: 233 --------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284 TV++ D ++++ + F K A KAGV K Sbjct: 238 APKTEKGKRTVDISDELLEIIEKYLKRLYKPKKTDRLFPYTKHTFENDMKEYAVKAGVKK 297 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 H +R A+ + G + G + V ETYT Sbjct: 298 IRLHDLRHSHASFLFNNGIDIITIALRLGHEEVQTTLETYTH 339 >gi|224540989|ref|ZP_03681528.1| hypothetical protein CATMIT_00140 [Catenibacterium mitsuokai DSM 15897] gi|224526088|gb|EEF95193.1| hypothetical protein CATMIT_00140 [Catenibacterium mitsuokai DSM 15897] Length = 335 Score = 109 bits (271), Expect = 8e-22, Method: Composition-based stats. Identities = 41/310 (13%), Positives = 90/310 (29%), Gaps = 39/310 (12%) Query: 71 LKWLISEYRKS--AHWGSLAVNSRISFESYFDQIIRKSGD--------FDYRKITTKHIR 120 L++++ + + N+ S++ I D F +I + I Sbjct: 6 FAVLVTKFLTEYLPLHRNCSKNTISSYKDSLKLFILFLRDHKSMNINKFKMHQINRELIL 65 Query: 121 SGVES---RKHTPSSAIQFLTSMRVLFKWAVRQ---EYVAINPCLSVERPKRKTEGIRPW 174 +E R ++P + L ++ +A + + LSV+ K T + Sbjct: 66 EFIEWLENRGNSPVTINHRLAGIKSFINFAQYESVENLAYLQTVLSVKSLKTTTRQVDYL 125 Query: 175 TKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQK 228 T+E M + + + R+ L +G R + C ++ + K Sbjct: 126 TEEQMNNLINLPPTDTSTGIRHRIIMCLLYDTGARVQELCDLKIEDINLGNNPTVKLHGK 185 Query: 229 TGTIITVELPDGFMKLLAMTPIGKE--------TFFINNDKQKMNATQFSIWFKAKATKA 280 I V + ++L + N + Q+M+ + AT Sbjct: 186 GSKIRIVPISKNMNQILEVYISKFFSDIKLKNEYLIKNKNNQQMSRDGIEYIVQKYATIL 245 Query: 281 GV-------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 H R A + G + + Y + R + Sbjct: 246 KNNDPSFPSKVHPHMFRHSKAMHMLAVDIPIVYIRDFLGHEDISTTMIYARADSRKK--N 303 Query: 334 KNSRRISSVV 343 + ++ + Sbjct: 304 EAINNLAPKL 313 >gi|197250677|ref|YP_002147601.1| integrase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|205360077|ref|ZP_02834436.2| integrase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|197214380|gb|ACH51777.1| integrase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|205341129|gb|EDZ27893.1| integrase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] Length = 336 Score = 109 bits (271), Expect = 8e-22, Method: Composition-based stats. Identities = 54/319 (16%), Positives = 111/319 (34%), Gaps = 21/319 (6%) Query: 14 ERTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 ++ G+ R G+RIR + + Y + + +E+ + P + L Sbjct: 10 KKLDDGRYEVDVRPRGTSGKRIR-RKFNRKSEAQTYEKYVLTNFHDKEWQDKPADRRL-L 67 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--- 128 LI+ + + N S++ ++I R+ G+ ++T + SR H Sbjct: 68 SDLIALWW---SYHGKNHNYGDSYKKRLEKINREMGEPRVYELTRNFLMKYRASRLHDGV 124 Query: 129 TPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + + + +M +F+ + E + NP V + + + + ++E+++ Sbjct: 125 SAGTVNRDFCTMSSMFRLLIDMEEFHHENPFHKVRKLRLENTEMSFLSEEEIRDLLMA-- 182 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247 R L +G R ++ +H+ +N + KTG TV + + Sbjct: 183 LTGDDRRVVVLCLNTGARWGEASNLKAEHVISNRVTFVKTKTGPARTVPISQEIADYILT 242 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307 GK N + + ++ H +R AT G L Sbjct: 243 RKSGKLFDT--------NYERVRDVLRKVKPDLPRGQALHVLRHTFATHFMINGGNIITL 294 Query: 308 MATYGWKTVDQAETYTKGA 326 G T++Q TY A Sbjct: 295 QRILGHTTIEQTMTYAHFA 313 >gi|190573348|ref|YP_001971193.1| putative prophage integrase [Stenotrophomonas maltophilia K279a] gi|190011270|emb|CAQ44883.1| putative prophage integrase [Stenotrophomonas maltophilia K279a] Length = 413 Score = 109 bits (271), Expect = 8e-22, Method: Composition-based stats. Identities = 55/354 (15%), Positives = 96/354 (27%), Gaps = 25/354 (7%) Query: 9 PFVTKERTRHGKI----IYYFRKGHGRRIRLPYPHESTFIPAY-----MSALTGSTPKRE 59 P + T G+ Y G R+ L E T A A Sbjct: 41 PGFLCKITPAGRRVFMLQYRTNAGQSRKPSLGLYGELTIEQARVMAQDWLAEVRRGGDPG 100 Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKH 118 + +K T+ L ++ + ++ +++ D+ II G + Sbjct: 101 GAKAEARKAPTVAELCKKFMEDYSKKRNKPSTWRGYQAVIDRCIIPMLGRKKVADVKRPD 160 Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 I +E + P+ A + +R +F A + P +D Sbjct: 161 IAGYMEKLSYKPTEANKGFAILRKMFNLAEVWGFRPDGTNPCRHVPMYPPGKKTRLIVDD 220 Query: 179 MQQFKSFWSEGSQPR--------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230 E + L+ R S+ C + + + + Sbjct: 221 EMVLIFRQLEKLEAEGLENYVIPLSIRLQFEFAGRRSEICTLEWDWIDLDNRRVMWPDSK 280 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW-----FKAKATKAGVNK- 284 T + L T +E + + AGV Sbjct: 281 TGGMSKPMSAEAHWLLSTAPRREGCPYVLPSPNDPTRHLTFGEHYGGWCRVLKAAGVPHV 340 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSR 337 HG+R SAT A++G M KTV Q Y D+ +R + Sbjct: 341 GTHGIRHRSATDIANSGVPIKVGMELTQHKTVAQFMHYVHTEDKPVRDAAELVA 394 >gi|315038770|ref|YP_004032338.1| phage integrase family protein [Lactobacillus amylovorus GRL 1112] gi|312276903|gb|ADQ59543.1| phage integrase family protein [Lactobacillus amylovorus GRL 1112] Length = 322 Score = 109 bits (271), Expect = 8e-22, Method: Composition-based stats. Identities = 38/291 (13%), Positives = 98/291 (33%), Gaps = 14/291 (4%) Query: 45 PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR 104 A + L KR + P KK + + ++++ ++ + + ++ +Q+++ Sbjct: 18 AAQLKRLQEVLLKRLVKDEPEKKMISNQEYLNKFLEAKKIEGCSERTIKYYKVTVEQLLK 77 Query: 105 KSGDFDYRKITTKHIRSGVESRK----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 K RK+TT+ +R + + ++ ++ F W ++Y+ +P Sbjct: 78 KVLH-PIRKVTTEQMREYLVDYQKINNCGKTTIDNVRRNISSFFSWLEEEDYILKSPMRR 136 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220 + + + + T ED+++ + + + L +G+R + R + + Sbjct: 137 IHKIRAEKLVKNVITDEDIER-LRDGCDCLRDVAMIDLLYSTGIRVGELVRLNRADINFS 195 Query: 221 IFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFI------NNDKQKMNATQFSIWF 273 V L + + ++ + I Sbjct: 196 ERECVVFGKGDKERRVYFDAKSKIHLINYLKSRTDDNPALFVSLDRPYSRLKISGVEIRL 255 Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + K +++ H R+ AT + D G ++ G +D Y Sbjct: 256 RQLGRKLNLDRVHPHKFRRSMATRAIDKGMPIEQVQKILGHSQIDTTMQYA 306 >gi|229579624|ref|YP_002838023.1| integrase family protein [Sulfolobus islandicus Y.G.57.14] gi|228010339|gb|ACP46101.1| integrase family protein [Sulfolobus islandicus Y.G.57.14] Length = 291 Score = 109 bits (271), Expect = 8e-22, Method: Composition-based stats. Identities = 45/272 (16%), Positives = 91/272 (33%), Gaps = 30/272 (11%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV-------- 123 L + + + + + + + + D RK+T++ + + Sbjct: 12 GDLYNAFINALVLAGAGNGTIKLYSTAVKDFLDFI-NKDPRKVTSEDLNKWISNLLNREG 70 Query: 124 -------ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 E R+ + ++ ++R KW N + PK + + ++ + Sbjct: 71 KVKGDEVEKRRAKSVTIRYYIIAVRRFLKWL--------NVSVKPPIPKVRGKEVKALDE 122 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIIT 234 +Q+ + ++ +L LL +GLR ++ V+ + NN+ ++ K G Sbjct: 123 SQIQKVLNTCKR-TKDKLIIRLLLDTGLRANELLSVLVKDVDLENNMIRVRNTKNGEERV 181 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSA 294 V D +LL GK+ D K K + H +R A Sbjct: 182 VFFTDETKQLLRKYMKGKKLDEKLFDI---TYDALYRKLKRLGNKVEIELRPHILRHTFA 238 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGA 326 T+S G L G K + + YT Sbjct: 239 TLSLKRGINVITLQKLLGHKDIKTTQIYTHLV 270 >gi|118467405|ref|YP_888043.1| site-specific tyrosine recombinase XerD [Mycobacterium smegmatis str. MC2 155] gi|118168692|gb|ABK69588.1| tyrosine recombinase XerD [Mycobacterium smegmatis str. MC2 155] Length = 318 Score = 109 bits (271), Expect = 8e-22, Method: Composition-based stats. Identities = 43/293 (14%), Positives = 88/293 (30%), Gaps = 40/293 (13%) Query: 71 LKWLISE----YRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-------KH 118 L+ ++ E Y +A N+ S+ + + Sbjct: 7 LRAVLDEQVQGYLDHLTIERGVAANTLSSYRRDLRRYAEHLRQRGIDDLARVAESDVSDF 66 Query: 119 IRSGVESRKHTPSSA------IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 + + +A + + ++R L ++A + + +V+ P + Sbjct: 67 LVALRRGDPDAGVTALSAVSAARAVVAVRGLHRFAAAEGLTENDVARAVKPPTPSRRLPK 126 Query: 173 PWTKEDMQQFKSFWSEGS--------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 T +++ S + R E L +G R S++ V + S+ Sbjct: 127 SLTLDEVLALLEAAGGDSEADSPLTLRNRALLELLYSTGARISEAVGLDVDDVDTQARSV 186 Query: 225 K-TQKTGTIITVELPDGFMKLLAMTPIGKETF-----------FINNDKQKMNATQFSIW 272 K G V + + L + F+N +++ Sbjct: 187 LLHGKGGKQRLVPIGRPAVSALDAYLVRGRPDLARRGRGTPAIFLNARGGRLSRQSAWQV 246 Query: 273 FKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + A +AG+ S H +R AT D GA + G +V + YT Sbjct: 247 LQDSAERAGIASAVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYT 299 >gi|119715851|ref|YP_922816.1| phage integrase family protein [Nocardioides sp. JS614] gi|119536512|gb|ABL81129.1| phage integrase family protein [Nocardioides sp. JS614] Length = 368 Score = 109 bits (271), Expect = 8e-22, Method: Composition-based stats. Identities = 61/371 (16%), Positives = 115/371 (30%), Gaps = 49/371 (13%) Query: 10 FVTKERTRHGKIIYY--FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67 ++ T G + +R GR+ R S + + + + + Sbjct: 3 WIKTRVTDDGDTRFVACYRDPEGRQ-RSAGTFSSRRAAERAAHREEAKVREGAWHDHSRG 61 Query: 68 PTTLKWLISE-YRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVE- 124 T + + S H + ++ ++ SY I G KI I+ V Sbjct: 62 QVTFAEYVETVWLPSKHVET---STLAAYRSYLDRHFIPTFGRRPMGKILPSEIQRWVTT 118 Query: 125 --SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 +P+S ++ T + +F+ A+R V NPC+ E PK + R T E+ Sbjct: 119 ATEHGLSPASVRKYHTMLHSVFERALRDRVVTFNPCVHTELPKVVKKKARTLTPEEYVAI 178 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242 + E Q RL E + +GLR + +HL + ++T ++++ Sbjct: 179 LTALPE--QHRLMVETAINTGLRWGELIALKPRHLDLIKRQLTVEETVVEVSIKNSPTGH 236 Query: 243 KLLAMTPIGKETFFIN----------------------------NDKQKMNATQFSIWFK 274 ++L + ++ F Sbjct: 237 RMLTKPYPKDNEARTMGLPADLVDQLADWITTRRLRLDDLLFATREGTPISRNTFRTRVW 296 Query: 275 AKATKA---GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG---ADR 328 A +A + H +R A+ G+ +M G + + Y AD Sbjct: 297 LPAIRASGVDFDVRVHDLRHAHASWLLAGGSDLKSVMDRMGHAQITTTQKYLHALPDADA 356 Query: 329 IRLGIKNSRRI 339 L RI Sbjct: 357 KNL--DALNRI 365 >gi|300783889|ref|YP_003764180.1| integrase/recombinase XerC [Amycolatopsis mediterranei U32] gi|299793403|gb|ADJ43778.1| integrase/recombinase XerC [Amycolatopsis mediterranei U32] Length = 326 Score = 109 bits (271), Expect = 8e-22, Method: Composition-based stats. Identities = 44/312 (14%), Positives = 98/312 (31%), Gaps = 32/312 (10%) Query: 51 LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--G 107 +G + + P ++ +++ Y + L+ ++ ++ ++ G Sbjct: 5 RSGRARRPDLRALRAALPEPVRAVVTAYERHLGLERGLSAHTVRAYVGDAVSLLGFVVDG 64 Query: 108 DFDYRKITTKHIRSGVESRKHTPSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164 + ++ +R+ + +++ +S + S R WA R +A +P + P Sbjct: 65 GSEVAELDLARLRAWLAAQQSGGASRTTLARRAASARTFTAWAHRTGVLATDPGGRLAAP 124 Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEG--------SQPRLAFEFLLYSGLRCSDSCRAGV-Q 215 + + + G + R E L +G+R S+ C V + Sbjct: 125 RAHRTLPGVLRAGQAGEVMQASAAGAAQRDPVALRDRAIVELLYATGIRVSELCGLDVGE 184 Query: 216 HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN--------------DK 261 + K G V + LA I Sbjct: 185 ADFSRRVVTVLGKGGKERVVPFGVPAAEALADWIDEGRPKIITESGGESAEAALFLGVRG 244 Query: 262 QKMNATQFSIWFKAKATKAG--VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 ++++ T ++ HG+R +AT + GA + G T+ Sbjct: 245 KRVDPRAVRRVVHDAVTAVPGALDMGPHGLRHSAATHLLEGGADLRSVQELLGHATLATT 304 Query: 320 ETYTKG-ADRIR 330 + YT DR++ Sbjct: 305 QLYTHVTVDRLK 316 >gi|291524090|emb|CBK89677.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629] Length = 280 Score = 109 bits (271), Expect = 8e-22, Method: Composition-based stats. Identities = 35/261 (13%), Positives = 87/261 (33%), Gaps = 18/261 (6%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMR 141 +L ++ ++ + + + D +TT + + +K +P + + + +R Sbjct: 16 RNLKDSTIHAYCTSVAHFLNHTA-KDIDALTTDDVDIFLTEKKLSGISPETYNHYHSGIR 74 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201 +K +++ + + + TK ++ + + + Sbjct: 75 FFYKKILKKNWDDDDIPRMKRD----RKLPTVLTKTEISAILDAT-PNLKHKAMIATMYS 129 Query: 202 SGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259 GLR S+ + I+ K+ + L D +++L Sbjct: 130 GGLRVSEVTHLHYDDISRTKKTIHIRDGKSRSDRYTLLADRTLEILTEYWFQCGRPRGIL 189 Query: 260 DKQKMNATQFS-----IWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYG 312 + +F+ A +AG+ + S H +R A+ ++G + A G Sbjct: 190 FPSSWTGDYLTKDSVIQFFRESAKRAGIQKHVSTHCLRHSFASHLFESGCDVKYIQALLG 249 Query: 313 WKTVDQAETYTKGADRIRLGI 333 + E Y +++ LGI Sbjct: 250 HRDPKSTEVYLHVSNKTLLGI 270 >gi|209542780|ref|YP_002275009.1| site-specific tyrosine recombinase XerC [Gluconacetobacter diazotrophicus PAl 5] gi|209530457|gb|ACI50394.1| integrase family protein [Gluconacetobacter diazotrophicus PAl 5] Length = 324 Score = 109 bits (271), Expect = 8e-22, Method: Composition-based stats. Identities = 42/309 (13%), Positives = 89/309 (28%), Gaps = 47/309 (15%) Query: 69 TTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFD--------YRKITTKHI 119 T L + + + ++ D+ + G +++ + Sbjct: 1 MTGADLRDAFLDWMRDERRASPLTIAAYRGDLDRFLDFIGAHVGGTVDLAVLDRLSLADL 60 Query: 120 RSGVESRKHTPSSAIQF------------------LTSMRVLFKWAVRQEYVAINPCLSV 161 R+ + + Q +++MR +++ R+ V + Sbjct: 61 RAWLAFEHAQGHALAQRDRGRSSTPDRAARTRARRVSAMRSFYRYLARRHGVTNPAPGLL 120 Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSE-------GSQPRLAFEFLLYSGLRCSDSCRAGV 214 P+ K+ RP ++ + ++ F L GLR S++ V Sbjct: 121 AAPRTKSPLPRPLSEAQALDVPDGVGDLAVTPLGQARDAALFLLLYGCGLRISEALGLDV 180 Query: 215 QHLQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-- 268 + L + + K G V + ++L + Sbjct: 181 RDLDHALSAGGTLLVRGKGGRERLVPILPAVARVLTDWRARHPAPLPDAPLFPGVRGGRL 240 Query: 269 ----FSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 +A AG+ + H +R AT + GA + G ++ + Y Sbjct: 241 QPAVAQRAMRAWRDMAGLPDHATPHALRHSFATHLMEGGADLRTIQELLGHASLSTTQRY 300 Query: 323 TKGADRIRL 331 T AD RL Sbjct: 301 T-LADEARL 308 >gi|22538023|ref|NP_688874.1| prophage LambdaSa2, site-specific recombinase phage integrase family protein [Streptococcus agalactiae 2603V/R] gi|22534925|gb|AAN00747.1|AE014276_28 prophage LambdaSa2, site-specific recombinase, phage integrase family [Streptococcus agalactiae 2603V/R] Length = 356 Score = 109 bits (271), Expect = 8e-22, Method: Composition-based stats. Identities = 47/340 (13%), Positives = 96/340 (28%), Gaps = 30/340 (8%) Query: 14 ERTR-HGKIIYY--FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 R R +G Y ++ G+ R T A +A+ K+ N T Sbjct: 4 YRKRENGLWEYRISYKTIDGKYKRKEKGGFKTKKLAQAAAIE--IEKKLTQNILTNDEVT 61 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 L + + + + + ++ F I + + IT + + + Sbjct: 62 LYDFVKTWSEVYKRPYVKDKTWETYSKNFKHIKNYFQELKVKDITPLYYQKKLNEFGEKY 121 Query: 131 S--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-----RPKRKTEGIRPWTKEDMQQFK 183 + + +F ++ K AVR++ V N + PK + E + Sbjct: 122 AQETLEKFHYQIKGAMKVAVREQVVTFNFAEGAKVKSQVEPKNEEEDFLEEREYKALLAL 181 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG------------- 230 + + L +GLR S++ + + K+ Sbjct: 182 TRENIQYVSYFTLYLLAVTGLRFSEAMGLTWSDIDFKNGILDINKSFDYSNTQDFADLKN 241 Query: 231 --TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHG 288 + V + + +L I N + K G H Sbjct: 242 ESSKRKVPIDSNTIDILREYKKNHWQANIKNRVCFGVSNSACN--KLIKKIVGRKVRNHS 299 Query: 289 VRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGAD 327 +R A+ G + G ++ D + YT + Sbjct: 300 LRHTYASFLILNGVDIVTISKLLGHESPDITLKVYTHQME 339 >gi|223983261|ref|ZP_03633454.1| hypothetical protein HOLDEFILI_00734 [Holdemania filiformis DSM 12042] gi|223964754|gb|EEF69073.1| hypothetical protein HOLDEFILI_00734 [Holdemania filiformis DSM 12042] Length = 343 Score = 109 bits (271), Expect = 8e-22, Method: Composition-based stats. Identities = 32/264 (12%), Positives = 80/264 (30%), Gaps = 14/264 (5%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESRK 127 + LIS++ + + + +ES ++ K + +TT +R + Sbjct: 66 EELISKFISAKEIEGCSKRTTKYYESTLIKMNEKI-NMSITYMTTDDLRTYLTDYQKMNN 124 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + +S ++ F W + Y+ +P + + K ++ E ++ Sbjct: 125 CSKASVDNIRRNLSSFFSWLEEENYILKSPMKRIHKIKTDKVIKETYSDETLEL-LRDSC 183 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLA 246 + + L +G+R + + + + V L Sbjct: 184 TSLRDLAIIDLLSSTGMRVGELVKLNINDIDFENRECVVFGKGNKERPVYFDARTKIHLK 243 Query: 247 MTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISAD 299 + + ++ + I + + G+ H R+ AT + D Sbjct: 244 NYLNTRNDDNPALFVSLDLPHDRLKISGVEIRLRQLGRRLGISKVHPHKFRRTVATKAID 303 Query: 300 AGATAHELMATYGWKTVDQAETYT 323 G ++ + G +D Y Sbjct: 304 KGMPIEQVQSLLGHSQIDTTMHYA 327 >gi|320107747|ref|YP_004183337.1| integrase family protein [Terriglobus saanensis SP1PR4] gi|319926268|gb|ADV83343.1| integrase family protein [Terriglobus saanensis SP1PR4] Length = 311 Score = 109 bits (271), Expect = 8e-22, Method: Composition-based stats. Identities = 45/290 (15%), Positives = 91/290 (31%), Gaps = 31/290 (10%) Query: 64 PRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIR 120 P P T L+ EY L + S++ + T ++I Sbjct: 2 PSPAPATNLQLVREYILYLRVERGLRPLTLESYQGDLYAFSEHLDSLHTSLLQATQENIA 61 Query: 121 SGVESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 S + + S + L+ +R ++W + + + +P L++E P + + Sbjct: 62 SFMAHLREHDQESRSIARKLSCLRGFYRWLLLDKRIHHDPTLNIESPASWKVLPKSLAES 121 Query: 178 DMQQFK----------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKT 226 ++++ + + L GLR ++ C V+ L + + Sbjct: 122 EVREMLDRTGVAAHSQQAGALSLRDHALMNLLYAGGLRAAEICDLRVEDLHLDQQRAQVR 181 Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAK 276 K V L D ++ L + F++ + + K+ Sbjct: 182 GKGDKERIVPLADTAVQALEVYLQRGRPQLVAKGLQRALFLSVRGKPLTNQTVWSIVKST 241 Query: 277 ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 A S H +R AT + GA + G + + YT A Sbjct: 242 NQLA----SPHKLRHSCATHMVEHGADLRSVQTLLGHADIVTTQVYTHLA 287 >gi|302349105|ref|YP_003816743.1| Tyrosine recombinase XerC/XerD [Acidilobus saccharovorans 345-15] gi|302329517|gb|ADL19712.1| Tyrosine recombinase XerC/XerD [Acidilobus saccharovorans 345-15] Length = 324 Score = 109 bits (271), Expect = 8e-22, Method: Composition-based stats. Identities = 33/288 (11%), Positives = 77/288 (26%), Gaps = 28/288 (9%) Query: 56 PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKI 114 +R P ++ + + + + + S+ + G ++ Sbjct: 3 ARRIQQPQPEVLSKSVADAVESFLSALEASGASKLTLKSYRAALQSFASHVGPSRPVSQL 62 Query: 115 TTKHIRSGVESRKHTP----------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164 + S + + S+ + +R +W + Sbjct: 63 SQADYLSWLSEMRSKGPVGPRGGRWSSTVHYYTIFVRRFLQW---------LGISGLPAE 113 Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 ++ + + L + SGLR + + Sbjct: 114 PQRRSEFSGALSWKEVEAMMSKARDLYDLLILSLMAESGLRAREVVNLTWGDIDLAKGEA 173 Query: 225 KTQKTG-TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 + + V L +L++ P G + K++ K+ A +AG++ Sbjct: 174 RVRGKYGKERLVVLGQVARSVLSVLPPGGPNERVV----KLSYQAIYDRVKSLARRAGID 229 Query: 284 KS---AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 S H +R AT + G + L G + + Y D Sbjct: 230 VSKVRPHVLRHTFATEALRRGMSLPVLQRLLGHSDIRITQVYLHLLDE 277 >gi|262038503|ref|ZP_06011872.1| putative integrase [Leptotrichia goodfellowii F0264] gi|261747372|gb|EEY34842.1| putative integrase [Leptotrichia goodfellowii F0264] Length = 356 Score = 109 bits (271), Expect = 8e-22, Method: Composition-based stats. Identities = 60/348 (17%), Positives = 111/348 (31%), Gaps = 37/348 (10%) Query: 15 RTRH-GKIIYY-FR-KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 RTR GK YY F G+R + +T A + NS + TL Sbjct: 2 RTRKIGKKWYYNFDIYIDGKRKIIEKVGGNTKKEAIEKGEIAKKDYEQTSNSFSQSIATL 61 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 LI +YRK+ L N++ YF+ II+ GD +K+ + + + K Sbjct: 62 SDLIEDYRKNYINIFLRENTKRIRNYYFNIIIKDIGDTKLQKMNVRFFQDYIVKTKD--- 118 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 + LF +AVR E ++ NP +V PK + T + + Sbjct: 119 -PNNIKKFLNSLFNYAVRVELISKNPIKNVIVPKAEKIDFDLIT-PEDIEIIKNMEIREV 176 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQN----------------------NIFSIKTQKT 229 + F+ +G+R S+ +++ S K + Sbjct: 177 LKDFILFIYLTGVRPSEGLALEFKNINFKDKTISIERSINKYKRNLFEPLKNNSSKRKIL 236 Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------FSIWFKAKATKAGVN 283 I ++ + E ++ ++ + F+ K N Sbjct: 237 FNDIIEDIFTRRKSAIEKLIDKSEGYYKSDLIFANSKGNTFIISDFNKEKYKIKEKINKN 296 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330 +R T+ + G + G + E Y ++++ Sbjct: 297 FHFRALRHMHTTLLIEKGVNIKAVQERLGHADIKTTLEVYAHVTEKMK 344 >gi|239907685|ref|YP_002954426.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1] gi|239797551|dbj|BAH76540.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1] Length = 348 Score = 109 bits (271), Expect = 8e-22, Method: Composition-based stats. Identities = 45/344 (13%), Positives = 102/344 (29%), Gaps = 18/344 (5%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS---------PR 65 R +G +R G++ + A S Sbjct: 6 RKNNGTYYVAYRNAEGKQTTKTFGKGREGRRAAQKFDKQVKDHGPVPPSTPEAISEVVAV 65 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG-- 122 L L Y + V + S+ +I +I I + Sbjct: 66 ADKIYLDQLAQMYINTRKVEGTTVKTLNEIRSFLKKHLIPVFAQRPIDEIRYDEILTIVG 125 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQ 181 H+P + ++L+ ++ +F++ V+Q+ + NP ++ K + + Sbjct: 126 KAYADHSPVTRGRYLSYLKTVFQFGVKQDLIEKNPLRHWKKAKEHPRDTKLTVADLMKIK 185 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 + +A+ + +G + + + + KT + + + F Sbjct: 186 AVAAPHLAWAIEIAWNLGVRTGESELFALKWADVDWAQSTVKVFATKTKSARVIPISPEF 245 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISAD 299 M L +T ++ + QF + F++ +A + + +R AT Sbjct: 246 MARLKEMQGRAKTEYLIEYAGRP-VKQFRMSFRSACKRAEIPYHVVLYDIRHLLATTLLQ 304 Query: 300 AGATAHELMATYGWKTVDQA--ETYTKGADRIRLGIKNSRRISS 341 G + G +V + Y D R I +++ Sbjct: 305 EGGDLSAVSKLMGHSSVHMTANQYYHLLGDEKRRTIAKLPSLNA 348 >gi|228961350|ref|ZP_04122965.1| YdcL (Lambda integrase-like, N-terminal,DNA breaking-rejoining enzyme, catalytic core) [Bacillus thuringiensis serovar pakistani str. T13001] gi|228798308|gb|EEM45306.1| YdcL (Lambda integrase-like, N-terminal,DNA breaking-rejoining enzyme, catalytic core) [Bacillus thuringiensis serovar pakistani str. T13001] Length = 353 Score = 109 bits (271), Expect = 8e-22, Method: Composition-based stats. Identities = 48/343 (13%), Positives = 105/343 (30%), Gaps = 39/343 (11%) Query: 11 VTKERTRHGKIIYYFR----KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 + K++ R G + R G ++++ + + + Sbjct: 3 IYKDKER-GTYFFVVRVRQFDGTQKQVKRRGFKTKKEAREAEAKM--------LVEKETN 53 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVES 125 T + Y +S ++ + + ++ + G +T KH+ + Sbjct: 54 SSLTFAQVADSYFDWY-CQRRKESSIVTIRNVIYNHLVPEFGKVKIDHLTPKHVMNYQNK 112 Query: 126 --RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 K++ S +F T++ + +A++ + NP ++++ + + D + Sbjct: 113 VINKYSADSLKKFHTTLSAILNFAIKFYGLPNNPARIAGNFEKESNKRMNFWEFDEFKQF 172 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN------------NIFSIKTQKTGT 231 E + F L YSG R + + N K + + Sbjct: 173 IKVVEDPLYKAFFSTLYYSGARKGELLALTWADINFEKKTIDINKTEFNRQITKPKTKSS 232 Query: 232 IITVELPDGFMKLLA--------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 + LP M LL P+ + + + T ++ T A V Sbjct: 233 NRIIMLPTHVMSLLKDLQKYVTLNMPLKNDYVVFGDFYNSIAITTLRENYERFLTTADVR 292 Query: 284 K-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 K H R A+ + G + + G V TY+ Sbjct: 293 KILLHEFRHSHASYLINKGVSPLVVAQRLGHSNVSTTLNTYSH 335 >gi|153815634|ref|ZP_01968302.1| hypothetical protein RUMTOR_01870 [Ruminococcus torques ATCC 27756] gi|317502423|ref|ZP_07960587.1| phage integrase family Site-specific recombinase [Lachnospiraceae bacterium 8_1_57FAA] gi|145847065|gb|EDK23983.1| hypothetical protein RUMTOR_01870 [Ruminococcus torques ATCC 27756] gi|316896161|gb|EFV18268.1| phage integrase family Site-specific recombinase [Lachnospiraceae bacterium 8_1_57FAA] Length = 322 Score = 109 bits (271), Expect = 8e-22, Method: Composition-based stats. Identities = 33/263 (12%), Positives = 84/263 (31%), Gaps = 14/263 (5%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----KH 128 + + + + + + + + K + R+ITT+ IR+ + + Sbjct: 46 DFLQMFLDAKRIEGCSERTIQYYRVTVEHLFSKM-NQSVRRITTEEIRTYLSDYQKINRC 104 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + + ++ F W ++Y+ +P + + K KT T E +++ Sbjct: 105 SNVTIDNIRRNISSFFSWLEEEDYILKSPMKRIHKIKTKTVVKSVITDEGIEK-LRDNCA 163 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAM 247 + + L +G+R + ++ + I K V L Sbjct: 164 EIRDLAIIDLLYSTGIRVGELVNLNIEDIDLEGRECIVYGKGDKERRVYFDAKAKVHLKE 223 Query: 248 TPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300 ++ + ++ + I + + +++ H R+ AT + D Sbjct: 224 YIEKRKDNNEALFVTLDAPHDRLKISGVEIRLRQLGRQLKLDRIHPHKFRRTMATRAIDK 283 Query: 301 GATAHELMATYGWKTVDQAETYT 323 G ++ G +D Y Sbjct: 284 GMPIEQVQKILGHSQIDTTMQYA 306 >gi|329943079|ref|ZP_08291853.1| phage integrase, N-terminal SAM-like domain protein [Chlamydophila psittaci Cal10] gi|313848235|emb|CBY17236.1| putative site-specific recombinase [Chlamydophila psittaci RD1] gi|328814626|gb|EGF84616.1| phage integrase, N-terminal SAM-like domain protein [Chlamydophila psittaci Cal10] Length = 299 Score = 109 bits (271), Expect = 8e-22, Method: Composition-based stats. Identities = 36/263 (13%), Positives = 86/263 (32%), Gaps = 23/263 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMR 141 L+ NS ++ ++ + +I+ + V+ ++ + L +++ Sbjct: 22 RGLSCNSISAYIQDITLFLKINAITSIAEISQDSVHLFVDQLHKRKEAEATLARRLIALK 81 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-------SFWSEGSQPRL 194 V F++ + + P + E PK T +++ + ++ Sbjct: 82 VFFRFLKEAKLLEHPPLI--EHPKIWKRLPTVLTPKEVDTLLAIPKKTTTSSMISTRDTA 139 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII----------TVELPDGFMKL 244 L +G+R S+ C + + ++ + + + T + F + Sbjct: 140 ILHTLYSTGIRVSELCGLHIGDVSDDFLRVTGKGSKTRLVPLGKLASKAIDAYLCPFREN 199 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGAT 303 L + F++ +K+ + A + + S H +R AT D A Sbjct: 200 LQKKQPEEHHLFLSIRGRKLERSCVWKRIHYYAKQVTHKRVSPHSLRHAFATHLLDNKAD 259 Query: 304 AHELMATYGWKTVDQAETYTKGA 326 + G + E YT A Sbjct: 260 LRVIQEMLGHARIASTEVYTHVA 282 >gi|313885490|ref|ZP_07819240.1| site-specific recombinase, phage integrase family [Eremococcus coleocola ACS-139-V-Col8] gi|312619220|gb|EFR30659.1| site-specific recombinase, phage integrase family [Eremococcus coleocola ACS-139-V-Col8] Length = 385 Score = 109 bits (271), Expect = 8e-22, Method: Composition-based stats. Identities = 55/372 (14%), Positives = 111/372 (29%), Gaps = 55/372 (14%) Query: 11 VTKERTRHG-KIIYYFRK-------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62 + K + G K Y G +R + L + +I Sbjct: 2 IKKYTKKDGSKAYMYVAYLGVDPLTGKQKRTTRRGFKTKREARIAEAQLLAEIKENGFIE 61 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRS 121 SP+ T + + + + ++ ++ + I+ K G KITT++ ++ Sbjct: 62 SPK--QMTFEQVFNLWIPIYE-TTVKESTFQMQKDVIRLHILPKFGQARVDKITTQYCQT 118 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEY-VAINPCLSVERPKRKTEGIRPWTKEDMQ 180 V S + + + ++AV + NP V RPK+K E K Sbjct: 119 IVNEWFGYYSKYSNLIGLTQRILEFAVNNLNLIKDNPMKKVIRPKKKNELREDKYKAPTY 178 Query: 181 QFKSFWS--------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 K + Q + F + Y+G+R + C ++ ++T Sbjct: 179 SAKQLNDFLEKVKELDPGQMYVVFRIIAYTGMREGEVCGLKWTDFDEVNGTLAVRRTVAR 238 Query: 233 -----------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF------ 269 T+ L +++L + + QF Sbjct: 239 GKDYKKILQNTKSVAGQRTIPLDQETIEVLKNWKKTQRIEMFKLGFNTNHKDQFIITNEF 298 Query: 270 ---------SIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 K K + + HG+R T+ ++GA+ E+ G + Sbjct: 299 NEFQYSQYPYALLKKIRKKCEIDPITVHGLRHTHCTLLIESGASLKEVQDRMGHEDESMV 358 Query: 320 -ETYTKGADRIR 330 + Y + + Sbjct: 359 LKVYLHINEEKK 370 >gi|328957208|ref|YP_004374594.1| putative phage integrase [Carnobacterium sp. 17-4] gi|328673532|gb|AEB29578.1| putative phage integrase [Carnobacterium sp. 17-4] Length = 382 Score = 109 bits (271), Expect = 8e-22, Method: Composition-based stats. Identities = 50/385 (12%), Positives = 110/385 (28%), Gaps = 58/385 (15%) Query: 11 VTKERTRHGKIIYYFR--------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62 + K +T+ GK Y F G +R AL+ E Sbjct: 4 INKYKTKDGKTAYKFNAYLGTDSMTGKKKRTTRQGFKTK---KEATLALSRLKLDIEMNG 60 Query: 63 SPRKKPTTLKWLISEYRKSAHWGS-LAVNSR-ISFESYFDQIIRKSGDFDYRKITTKHIR 120 + + K + + + + + ++ + E + + I+ GD KIT + Sbjct: 61 FKKSSTSKFKDVYELWI--VQYKNTVKESTLNKTLELFNNHILPIFGDLYMDKITVVFCQ 118 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + + +F +A+ V INP V P RK + Sbjct: 119 AALNDWYKRLQKYKAISNYASRIFDYAITISAVEINPFKKVSMPIRKVDVEEEKVLNFYN 178 Query: 181 QFKSFWSEGSQPR-------LAFEFLLYSGLRCSDSCRAGVQHLQNNIF----------- 222 + + R F L ++G R + + + Sbjct: 179 KEELTLFFDHLKRENKPLQLALFRTLAFTGARKGEILALQWRDINFTDNTIKINKTVTFG 238 Query: 223 ------SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-------- 268 + ++ ++ + MK+L ++ + +N TQ Sbjct: 239 LDNVLIIQTPKTKTSVRSISMDPQTMKILKSWKKTQKETYFKLGFNTLNPTQLVFPSTKN 298 Query: 269 -------FSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320 + + + + HG R ++ +AGA+ E+ G + Sbjct: 299 TVMQPPKVGKYLDRLVNLYELKRITPHGFRHTHCSLLFEAGASVKEVQDRLGHSNIQTTM 358 Query: 321 -TYTKGADRIRLGIKNSRRISSVVD 344 Y ++ + + + + V+ Sbjct: 359 NIYAHVTEKAK--ENTADKFAKYVN 381 >gi|302534721|ref|ZP_07287063.1| phage integrase [Streptomyces sp. C] gi|302443616|gb|EFL15432.1| phage integrase [Streptomyces sp. C] Length = 422 Score = 109 bits (271), Expect = 8e-22, Method: Composition-based stats. Identities = 52/402 (12%), Positives = 116/402 (28%), Gaps = 74/402 (18%) Query: 14 ERTRHGKI----IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 + + G+ G +R+R+ + S + Sbjct: 19 YQRKDGRWEAAGYVLAANGTCKRVRVYGITRKNAADKLAEKIADSNRGLPVA----TADS 74 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128 T+ ++ + S L N+ + + +I G ++T K +R+ ++ + Sbjct: 75 TVGDYLTYWLGSVAVHRLRENTHTRYAACVRLHLIPGLGTKKVARLTAKDVRTFLDRLRT 134 Query: 129 ---------------------------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161 + + + ++ + AVR++ + N +V Sbjct: 135 TCQCCTQGLDTERKRCCAIGECCQKQLSALTVTYVHSVLKSALEHAVREDELPRNVARNV 194 Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221 + + RP T + +QF + +E L +GLR + + L Sbjct: 195 KTTTHQPRRFRPLTAAEARQFLDAARAD-RLHALYELALRTGLRKGELLGLHWEDLDLTT 253 Query: 222 -----------------FSIKTQKTGTIITVELPDGFMKLLAMT--------------PI 250 + T+ + + LP + L Sbjct: 254 GTASIHRSLQRTRTGGLTHLPTKTRASERRIALPTECLHSLKEHKGRQDKERETAESAWQ 313 Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMA 309 F ++ + F++ +AG+ + H +R +AT+ + G + Sbjct: 314 DSGLVFTTPTGGPLDPANLTRRFRSFLDRAGLRRIRFHDLRHSTATLLLEQGVDLVVIKE 373 Query: 310 TYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVVDS--DDP 348 G + Y R+RL + + S DDP Sbjct: 374 LLGHAHIGVTAGVYAHV--RLRLQRDAIDTLGHAIGSQEDDP 413 >gi|300723777|ref|YP_003713084.1| Tyrosine recombinase xerC 2 [Xenorhabdus nematophila ATCC 19061] gi|297630301|emb|CBJ90955.1| Tyrosine recombinase xerC 2 [Xenorhabdus nematophila ATCC 19061] Length = 342 Score = 109 bits (271), Expect = 8e-22, Method: Composition-based stats. Identities = 35/294 (11%), Positives = 92/294 (31%), Gaps = 34/294 (11%) Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR---KITTKHIRSG 122 + P TL+ + Y + + ++ ++ + D R +++ + S Sbjct: 2 ETPPTLRQQLEAYLDTVVDRGYSKRTQEAYRERLRPFVDWCELRDVRHAPQVSLALLESW 61 Query: 123 VESRK----------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI- 171 + + + L+++R F+W +++ ++ NP + PK + Sbjct: 62 QRYLRSYRKADGQYYTSGGLINR-LSALRGWFRWLLKRHHILYNPAELLTMPKEEKRLPA 120 Query: 172 ----RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK 225 T+ + G + R E +G+R ++ + + + ++ Sbjct: 121 QVLSETETETVLMSIDIQTPLGLRNRALLEVFWSTGIRRNELINLKLSDIDSGRGVIMVR 180 Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK----------QKMNATQFSIWFKA 275 K V + + + + Q + + ++ Sbjct: 181 QGKGRKDRVVPIGERALAWVNRYLADVRPRLAWKYDSGYLFITLKGQPLARSTVTLMAGR 240 Query: 276 KAT---KAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 + + H R AT + GA + A G + ++ + YT+ A Sbjct: 241 TIRQQARLNKPGTCHVFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVA 294 >gi|268610071|ref|ZP_06143798.1| Phage integrase [Ruminococcus flavefaciens FD-1] Length = 386 Score = 109 bits (271), Expect = 8e-22, Method: Composition-based stats. Identities = 49/381 (12%), Positives = 114/381 (29%), Gaps = 52/381 (13%) Query: 15 RTRHGKIIYYF---RKGHGRRIRLPYPH------ESTFIPAYMSALTGSTPKREYINSPR 65 R+GK + R G++I + + + + Sbjct: 5 TNRNGKFLIRVFTGRDISGKQIVKSTTYVPPEGTSPKKAEKLAQEYSFEFERHCKGYAQL 64 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG-- 122 + L Y ++ L + +++ES + I G+ + ITT + Sbjct: 65 NENMRFYELAEWYFENYAPEELKPTTVLNYESQYRNHIAPILGNKKLKDITTPMLTEFLK 124 Query: 123 --VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP-KRKTEGIRPWTKEDM 179 + P S + ++ +++ A++Q + NPC +V P KR + ++E+ Sbjct: 125 VLGKEHHLNPISVRKVYIVVQSIYRRALQQGFARDNPCQNVIIPKKRDSGKRYSLSEEET 184 Query: 180 QQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 ++F + + LL++G+R + + + +I T + + + Sbjct: 185 KRFLHLIRDKPWDEDVKRILIVLLFTGMRIGECLGLAWEDIDFEKKTIFIHHTLSCVDGK 244 Query: 237 LP------------------------------DGFMKLLAMTPIGKETFFINNDKQKMNA 266 + L E F + + Sbjct: 245 CYLDSPKTKSSIRLIAMNSTVEKYLNDQQAYVEQLKMALGNKYAHPEMVFPSGQGNYRDR 304 Query: 267 TQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324 + K + + H +R +AT+ ++G + G + Y Sbjct: 305 SSVYHSLKRMTKGTEFEDMTLHKLRHCNATLLLNSGVDLKVISEHLGHCDIGVTANIYAD 364 Query: 325 GADRI--RLGIKNSRRISSVV 343 + RL ++S + Sbjct: 365 VLRKQKIRLADTIDDKLSDEL 385 >gi|238786957|ref|ZP_04630757.1| Integrase [Yersinia frederiksenii ATCC 33641] gi|238724745|gb|EEQ16385.1| Integrase [Yersinia frederiksenii ATCC 33641] Length = 334 Score = 109 bits (271), Expect = 8e-22, Method: Composition-based stats. Identities = 47/328 (14%), Positives = 96/328 (29%), Gaps = 33/328 (10%) Query: 15 RTRHGKI--IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 R GK + G+RIR +Y + + E S TL Sbjct: 5 RLSSGKWLCQCFPYGRDGKRIR-KQFATKGEALSYERRMMVNKQDTELGVS----AVTLN 59 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---- 128 L+ + + H +L+ S ++ I + G+ + E R + Sbjct: 60 ELVERWYE-MHGKTLSSG--ESRKTKLLAICERIGEPLAADVDKNMFAVYRERRLNGEWQ 116 Query: 129 -------TPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 ++ + + + +F R E+ NP + + + + ++++++ Sbjct: 117 AKGRTIVKEATVNREQSYLHAVFSELKRLGEWEGSNPLDGIRQFSEGDQELAFLSQDEIK 176 Query: 181 QFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 + E L L +G R ++ + + + K TV + Sbjct: 177 RLLVSCDESENKSLGTIVRLCLATGARWGEAQDMKQSQILPSRVTYINTKGKKNRTVPIS 236 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISA 298 + K + T + F K A + + H +R A+ Sbjct: 237 EKLFKRIPKNRGALFTP---------SYDAFKHALKRAAIELPKGQRTHVLRHTFASHFM 287 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGA 326 G L G T+ Y A Sbjct: 288 MGGGNILVLQQILGHSTILMTMRYAHFA 315 >gi|167648116|ref|YP_001685779.1| integrase family protein [Caulobacter sp. K31] gi|167350546|gb|ABZ73281.1| integrase family protein [Caulobacter sp. K31] Length = 432 Score = 109 bits (271), Expect = 8e-22, Method: Composition-based stats. Identities = 44/379 (11%), Positives = 96/379 (25%), Gaps = 45/379 (11%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPYPH-----ESTFIPAYMSALTGSTPKREYINS 63 P G+ Y + RR R G K Sbjct: 26 PGFGLRVYASGRKTYLVQYRSSRRTRRLTLGIHGALTPEMARREAKIHLGGIAKGGDPAE 85 Query: 64 PRKKP---TTLKWLISEYRKS--------AHWGSLAVNS-RISFESYFDQIIRKSGDFDY 111 +K T++ L Y + ++ + I G Sbjct: 86 EKKTNRNGMTVRELCERYMEDAEIGLVPGKRRMPKKPSTLQADRSRISSHITPLLGTRLV 145 Query: 112 RKITTKHIRSGVESRKHTPS-------------------SAIQFLTSMRVLFKWAVRQEY 152 +++T I + + +A + L + +F +A R Sbjct: 146 KEVTRADIHQFMRDVALGKARRDRKTKLRGRSIVRGGLGTAGRTLGLLGGIFTYAQRIGV 205 Query: 153 VAINPCLSVERPKRKTEGIR-----PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCS 207 + NP + +P + R T + + + + L +G R Sbjct: 206 IENNPVRGIPKPAVNSRYRRLSAAEYRTLGETLREAEQEGHNEKALTIIKLLALTGCRRG 265 Query: 208 DSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA- 266 + + + + + + T ++ + L + + Sbjct: 266 EIEKLRWEEVDDAGRCFRLADTKEGRSIRPIGPEVFALLNHRRPADARGYVFEGDVAGKA 325 Query: 267 -TQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 + K ++ + H +R A+++ D G T + A G Y Sbjct: 326 FDGVPKVWGKTIRKQLMDVTPHVLRHSFASMANDLGFTEATIAALLGHAAGTTTSRYVHN 385 Query: 326 ADRIRLGIKNSRRISSVVD 344 D I + ++S + Sbjct: 386 LDTA--LISAAEKVSGHIA 402 >gi|317486732|ref|ZP_07945549.1| phage integrase [Bilophila wadsworthia 3_1_6] gi|316922115|gb|EFV43384.1| phage integrase [Bilophila wadsworthia 3_1_6] Length = 363 Score = 109 bits (271), Expect = 8e-22, Method: Composition-based stats. Identities = 58/359 (16%), Positives = 113/359 (31%), Gaps = 27/359 (7%) Query: 1 MTPSLRLP-PFVTKER--TRHGKIIYYFR---KGHGRRIRLPYPHESTFIPAYMSALTGS 54 M + P V + R+GK F + R+I +S + A ++ Sbjct: 1 MAKREKTKYPGVYERVLIDRNGKADVAFDIAYRHDSRKIWETVGRKSEGVNASYASRIRG 60 Query: 55 TPKREYINSPRKKPT---TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY 111 + ++ P T K + G + + + + II GD Sbjct: 61 ERLKHIEDNNFVAPGNVPTFKQAAHRFLTVHMAGKASAKNMTGYLEH--HIIPIFGDARM 118 Query: 112 RKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRK 167 KI HI ++ ++ +P + + +R +++ A YV P V+ P Sbjct: 119 DKIRPMHIEELKKAIQNKGLSPQTEKHVIGFVRQVYRKAKLWGVYVGSIPTEGVQLPAVD 178 Query: 168 TEGIRPWTKEDMQQFKSF-WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIK 225 + +R T+++ + Q LY+G+R + V H+ Sbjct: 179 SARLRFLTEKEARILLDELKKRSPQWHDIAYVSLYTGMRLREVLSLKVGHVNIAARIINV 238 Query: 226 TQKTGTIITVELPDGFMKL-LAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT------ 278 + + ++ L F+ K + S FK A Sbjct: 239 MDAKAGTRAAYMNEEVQRIFLRRCDGKDTEGFVFEQKGGGHIRYISSAFKRTADMLFNEG 298 Query: 279 --KAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIK 334 A H +R + A G + + G T++ + Y+K + D R + Sbjct: 299 ITDARYKVVFHTLRHTFGSWLAQKGVPLYTIAELMGHSTLEMTKRYSKLSPDTKRDALS 357 >gi|294625249|ref|ZP_06703889.1| site-specific recombinase, phage integrase family [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292600477|gb|EFF44574.1| site-specific recombinase, phage integrase family [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 360 Score = 109 bits (271), Expect = 8e-22, Method: Composition-based stats. Identities = 57/359 (15%), Positives = 115/359 (32%), Gaps = 31/359 (8%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 +T G RK + + + YI + TT++ Sbjct: 6 KTPAGSWKAVIRKTGWP-PAIKTFRTKRDAEDWARRAEDEMVRGVYIRRAGSERTTVEAA 64 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE---------- 124 + Y ++IS + +I+ G + +T + + + Sbjct: 65 MRRYLAEVT-SGKRPVTQISEVRRAEVLIKYLGRYSLAAVTAEIVARFRDERLAGDLDAQ 123 Query: 125 --SRKHTPSSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQ 180 R + ++ L + +F A+++ + +P L + RP R T + Q Sbjct: 124 GQRRPRSNNTVRLELALLGHMFTVALKEWGLGLIHSPVLGIRRPPPGPGRDRRLTPHEEQ 183 Query: 181 QFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVE 236 + S P L + L +G+R S+ + + K G+ TV Sbjct: 184 RLLRAVDGHSNPMLGWIVRLALETGMRASELVGLRRSQVDLVRRVARLQQTKNGSSRTVP 243 Query: 237 LPDGFMKLLA--------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAH 287 L +++L + K + QF+ + AG+ + H Sbjct: 244 LTQEAVQVLRVALANPVRPIDTDLLFYGEPGRDGKRRSYQFNPAWMKLKCDAGMADLHFH 303 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346 +R + + +AG + E+ A G K++ YT R + R+ V S+ Sbjct: 304 DLRHEAISRLVEAGLSDQEVAAISGHKSMQMLRRYTHL--RAEDLVSKLDRLGRGVASN 360 >gi|257453044|ref|ZP_05618343.1| phage integrase family site specific recombinase [Fusobacterium sp. 3_1_5R] gi|317059582|ref|ZP_07924067.1| phage integrase [Fusobacterium sp. 3_1_5R] gi|313685258|gb|EFS22093.1| phage integrase [Fusobacterium sp. 3_1_5R] Length = 371 Score = 109 bits (271), Expect = 8e-22, Method: Composition-based stats. Identities = 57/375 (15%), Positives = 120/375 (32%), Gaps = 37/375 (9%) Query: 1 MTPSLRLPPFVTKERTRHGKIIYY--FRKG---HGRRIRLPYPHESTFIPAYMSALTGST 55 M TR+GK Y G G++IR + I + + Sbjct: 1 MPVRRNKGEGSITTTTRNGKTYYKASVTIGYDMDGKQIRKSFGSFRKSI--VVDKINTVK 58 Query: 56 PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKS-GDFDYRK 113 + + ++ L + + ++ N+ +E + +I+ + + Sbjct: 59 YEVKNDLLEKQGDIKFGKLFLSWIQDFKKVEVSGNTFAEYEVCYRLRILPYLLANAKANE 118 Query: 114 ITTKHIRSGVESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EG 170 IT ++ S + + + + + +A+ Q ++ NP ++ PK++ Sbjct: 119 ITLPFLQKYFNSLQNEWSVNVIRKTYVKINACLNFALIQGFINRNPAKGIKLPKQEKSTK 178 Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT- 229 + +TKE+ + + A F Y+GLR + + L + SIK Q Sbjct: 179 YKVFTKEEQDLILQTLNLRNIVDTAIYFDFYTGLRLGELLGLKWEDLDGRLLSIKRQYQK 238 Query: 230 --------------------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269 + + LP+ + LL+ E F D Q + + Sbjct: 239 NIEIAEQRKTTYVLKKLKTIHSYRCMTLPNKIVNLLSNMERTSEFIFPGIDGQPLEVKKL 298 Query: 270 SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGAD 327 A K + S H +R AT + + G + YT Sbjct: 299 PRRLAAICKKLNIPHRSFHSIRHSFATRLFEKNVQIKTVQELMGHSEIATTMDIYTHVMP 358 Query: 328 RIRLGIKNSRRISSV 342 + + + + + S+ Sbjct: 359 QTK--EEAANILDSI 371 >gi|251778173|ref|ZP_04821093.1| phage integrase [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082488|gb|EES48378.1| phage integrase [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 388 Score = 109 bits (271), Expect = 8e-22, Method: Composition-based stats. Identities = 51/385 (13%), Positives = 110/385 (28%), Gaps = 59/385 (15%) Query: 11 VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 + K++ ++GK Y++R H + + T I + ++ T Sbjct: 5 IYKKKIKNGKDYYFYRLRHENLDKPADLYGRTVKELEDRIKQRKYELEHDIVNNKECFET 64 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESRKH 128 +++ H+ L +++ ++E + ++ + + I+ S Sbjct: 65 F---FTDWLFDIHFSHLKPSTKENYEGVYRMYVKNSSLSKIKVKNLKLIDIQKFYNSLVS 121 Query: 129 TPSSA---IQFLTSMRVLFKWAVRQEYVAINPC-------LSVERPKRKTEGIRPWTKED 178 + +R ++ + + + K I P+T+E+ Sbjct: 122 NGCTIIRIKNIHKIIRPFIRYLYANNIIIKDFSSSIILPKEDEKTKLAKENKIIPFTREE 181 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII----- 233 + F S +G + F LYSGLR + + I KT I Sbjct: 182 EKTFLSAI-KGQHLEMLFVTALYSGLRQGELFALTWNDINFEKAYIDVNKTYRYIADVTR 240 Query: 234 ------------------------------TVELPDGFMKLLAMTPIGKETFFINNDKQK 263 + +LL + K Sbjct: 241 TGRTGGYSSIQTPKTPKSIRTVPIPQFLIKMLLQYRNDQRLLKIKYADVYEDHNLVFCNK 300 Query: 264 MNA----TQFSIWFKAKATKAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVD- 317 + A + +K T + H +R AT + G + G TV Sbjct: 301 LGAYLVDSTVGRQYKIILTNNNIPLRKFHDMRHTFATRLFELGEEPKTVQELLGHSTVSI 360 Query: 318 QAETYTKGADRIRLGIKNSRRISSV 342 TYT + ++ + ++ + Sbjct: 361 TLNTYTHVLESVK--QQAISKLDEL 383 >gi|294500323|ref|YP_003564023.1| putative tyrosine recombinase XerC-like protein [Bacillus megaterium QM B1551] gi|294350260|gb|ADE70589.1| probable tyrosine recombinase XerC-like protein [Bacillus megaterium QM B1551] Length = 283 Score = 109 bits (271), Expect = 8e-22, Method: Composition-based stats. Identities = 39/268 (14%), Positives = 88/268 (32%), Gaps = 19/268 (7%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGV---ESRKH 128 LI ++ + + N+ ++ + +Q ++T ++++ + ES Sbjct: 11 LIDDFSQWLIESGKSDNTIKTYRAVLNQFHEWLLSEGRHLDQVTKNNVQTYMINLESNNK 70 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + S+ + ++ V ++ + E V E+ ++ D + Sbjct: 71 SASTIEKAFVTISVFARFLEKPEIVQNIERKRKEKNNEVVPQSLEASELDRLLSEVKQQG 130 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFM-- 242 + LL++G+R S+ C + ++ N I+ K V L Sbjct: 131 NLRDIAIVYTLLHTGVRVSEICALNHKDVEINKSDGFLIIRNAKGCKKRFVPLSTEARNS 190 Query: 243 --KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADA 300 K + E F++N ++M+ K N + H +R Sbjct: 191 LKKYIDSLDSNHEALFVSNFDRRMSPRTVQYMLKKY------NVNPHKLRHTFCHELVKK 244 Query: 301 GATAHELMATYGWKTVDQAETYTKGADR 328 G + G V+ + Y K + R Sbjct: 245 GIDIATVAELAGHSDVNVTKRYLKSSTR 272 >gi|296392530|ref|YP_003657414.1| integrase family protein [Segniliparus rotundus DSM 44985] gi|296179677|gb|ADG96583.1| integrase family protein [Segniliparus rotundus DSM 44985] Length = 349 Score = 109 bits (271), Expect = 8e-22, Method: Composition-based stats. Identities = 37/277 (13%), Positives = 79/277 (28%), Gaps = 9/277 (3%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHTPS 131 L+ E+ L+ + G + + S + Sbjct: 69 LVQEWELFMLARRLSQRTITERIRVIKSFASSIGIEPSQASALDVARWLAQQSSLGQS-- 126 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 S + ++ FKW E+ +P + V + RP + D+ + + + Sbjct: 127 SLATYSQYLKAWFKWLQVHEHRTDDPMVKVGTVRYPDRAPRPVSDRDLARLLETVNR-KR 185 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI- 250 RL +GLR + + + + + +F K V L + P Sbjct: 186 TRLMVLLYCLAGLRAFEIAKLRGEDIVDGVFVRVLGKGNKERLVPLHPILQAIAPTMPER 245 Query: 251 -GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMA 309 ++ S +AGV + H +R + T D G + Sbjct: 246 GWWFPRDSRWPGMHISGKSVSQTISLTMRRAGVRATPHQLRHWQGTTLLDEGVDIRVVQE 305 Query: 310 TYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346 ++ YT+ + R++ ++ Sbjct: 306 IMRHASISTTAQYTQVPTHKT--SEAVSRLNPFRGAE 340 >gi|15808369|gb|AAL08410.1|AF252852_3 unknown [Prevotella loescheii] Length = 418 Score = 109 bits (271), Expect = 8e-22, Method: Composition-based stats. Identities = 32/212 (15%), Positives = 66/212 (31%), Gaps = 3/212 (1%) Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + ++A + + + K A Y+ I+ ++ + + T +++ + + E Sbjct: 199 SRNTASTYFSIFKAALKQAFIDGYLTIDLSAKIKGIQEQESRREYLTLDELNKLANTPCE 258 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248 + A F +GLR D + + + K T + Sbjct: 259 RDVLKRAALFSALTGLRHCDIQKLRWKEIAIEGNQAKLLFTQKKTKGVEYMPISEQAFKL 318 Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHE 306 + N + S +A KAG+ + S H R AT+ G + Sbjct: 319 CGEPRQPEQLVFEGLPNPSWISRPLRAWIEKAGIQKHLSFHCFRHTFATLQLANGTDIYT 378 Query: 307 LMATYGWKTVDQAETYTKGADRIR-LGIKNSR 337 + G V + Y K D + + Sbjct: 379 VSKMLGHTNVKTTQVYAKVVDEKKNKAANAIQ 410 >gi|323344390|ref|ZP_08084615.1| mobilizable transposon [Prevotella oralis ATCC 33269] gi|323094517|gb|EFZ37093.1| mobilizable transposon [Prevotella oralis ATCC 33269] Length = 418 Score = 109 bits (271), Expect = 9e-22, Method: Composition-based stats. Identities = 40/308 (12%), Positives = 87/308 (28%), Gaps = 16/308 (5%) Query: 45 PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR 104 Y +A S + + + + +++ + ++E + Sbjct: 104 REYDNASLYSDTETAQAEQKERLQQNFIKYFDK-VADKRHRNSSLSIQTNWERVHVLLKM 162 Query: 105 KSGDFDY-RKITTKHIRSGVESRKHTP-----------SSAIQFLTSMRVLFKWAVRQEY 152 +GD +I + P ++A + + + K A Y Sbjct: 163 FAGDTLLFSQIDNRLAEDFKYFLLSAPCGGGKKGTISRNTASTYFSIFKAALKQAFIDGY 222 Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212 + I+ ++ + + T +++ + + E + A F +GLR D + Sbjct: 223 LTIDLSAKIKGIQEQESRREYLTLDELNKLANTPCERDVLKRAALFSALTGLRHCDIQKL 282 Query: 213 GVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272 + K T + + N + S Sbjct: 283 KWNEIAIEGNQAKLLFTQKKTKGVEYMPISEQAFKLCGEPRQPEQLVFEGLPNPSWISRP 342 Query: 273 FKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 +A KAG+ + S H R AT+ G + + G V + Y K D + Sbjct: 343 LRAWIEKAGIQKHLSFHCFRHTFATLQLANGTDIYTVSKMLGHTNVKTTQVYAKVVDEKK 402 Query: 331 -LGIKNSR 337 + Sbjct: 403 NKAANAIQ 410 >gi|268609765|ref|ZP_06143492.1| integrase family protein [Ruminococcus flavefaciens FD-1] Length = 372 Score = 109 bits (271), Expect = 9e-22, Method: Composition-based stats. Identities = 34/313 (10%), Positives = 84/313 (26%), Gaps = 47/313 (15%) Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVE 124 T I + L +S E + ++ D K+ + I+ + Sbjct: 52 APDVTFGEYIRRWLYEVKANELKPSSLDRKEQTINYQVLPYLKDIPLTKLKSDDIQHMIN 111 Query: 125 --SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE----- 177 K++ S+ + ++ ++A+ + V+ N +V PK + + + Sbjct: 112 DLKLKYSYSTVKKAYEAVNSCLRYALSKREVSENAADNVSLPKSMKKAVNDISFFSDEEL 171 Query: 178 --DMQQFKSFWSEGSQPRLAFEFLLY---SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 ++ + G + E +++ +GLR + + N + + Sbjct: 172 GLIYKEAFKCYRNGKRIYRLAEIIVFLVNTGLRIGECLALKWSDIDWNTNIFRVSRNIVY 231 Query: 233 ITVELPDGFMKL--------------------------------LAMTPIGKETFFINND 260 + + + F ++ Sbjct: 232 VKRRDTKSMLAETGYSSLEQRSTKTKNGDRVVPLNSAAIRALLSIRGINKNNSYIFSTSN 291 Query: 261 KQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 ++ F+A + + H +R A+ G + G V Sbjct: 292 GGRVYPRNIDRMFRAILNRCHIKGRGVHSLRHTFASRMFAEGVDVKTVSEVLGHSDVSIT 351 Query: 320 -ETYTKGADRIRL 331 TY R+ Sbjct: 352 YNTYIHLLKEQRI 364 >gi|145306755|ref|YP_001144419.1| integrase/recombinase [Magnetospirillum gryphiswaldense MSR-1] gi|144901521|emb|CAM78243.1| integrase/recombinase [Magnetospirillum gryphiswaldense MSR-1] Length = 302 Score = 109 bits (271), Expect = 9e-22, Method: Composition-based stats. Identities = 33/285 (11%), Positives = 90/285 (31%), Gaps = 24/285 (8%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS-- 131 L + + ++ ++ + G T + +R ++ + Sbjct: 13 LRQRLIEDMTLRRFSRETQRNYIRDVGRFAAFLGRSP-DTATAEDVRQFQLEQRESGVPV 71 Query: 132 -SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 + ++++R F + + + + R + ++E++ + + + Sbjct: 72 PTMNSIVSALRFFFTHTIDRPDL----ARKLMRISHPRQLPMVLSREEVARLLNATTC-L 126 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE------------LP 238 + + A +GLR ++ V+ + + I+ ++ + Sbjct: 127 KHQAALSVAYGAGLRVAEVSALKVRDIDSERMLIRVERGKGGRSRNAMLSPDLLTLLRQW 186 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATI 296 F + + F + + ++ Q A A + K H +R AT Sbjct: 187 WAFGRQQGVMHRDGWLFPGQHTMKPISTRQLHRIVVEAAQAAEIAKRVGPHTLRHSFATH 246 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSRRIS 340 + G + G ++ YTK A R +R + R++ Sbjct: 247 LLEDGVDIRVIQVLLGHSKLENTALYTKVATRTVRTVVSPLDRLA 291 >gi|52079966|ref|YP_078757.1| lambda integrase-like, N-terminal,DNA breaking-rejoining enzyme, catalytic core [Bacillus licheniformis ATCC 14580] gi|52785338|ref|YP_091167.1| hypothetical protein BLi01574 [Bacillus licheniformis ATCC 14580] gi|52003177|gb|AAU23119.1| Lambda integrase-like, N-terminal,DNA breaking-rejoining enzyme, catalytic core [Bacillus licheniformis ATCC 14580] gi|52347840|gb|AAU40474.1| putative protein [Bacillus licheniformis ATCC 14580] Length = 381 Score = 109 bits (271), Expect = 9e-22, Method: Composition-based stats. Identities = 44/362 (12%), Positives = 99/362 (27%), Gaps = 47/362 (12%) Query: 11 VTKERTRHGKIIYYFRKG----HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 V K+ + GK + + G G RI+ S+ A + NS Sbjct: 3 VIKKDDKTGKYYFVYSGGVHPITGARIQKRRQGMSSLREAKEVLKQVIIEVDKEKNSHNP 62 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKIT----TKHIRS 121 + ++ +S L ++ +++ D I+ G F + IT +I Sbjct: 63 NKSVFSTFAEKWFESKKVR-LRSSTIVNYREQLDYNILPYLGTFKIKDITEEVLQHYINR 121 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW--TKEDM 179 RK P++ + + K A R+ + V P + Sbjct: 122 LHNERKLAPATIRTAFGVVAEVLKKASRKGAFDLAILDDVNLPPENRISKVWNESNVQAF 181 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII------ 233 ++ ++ + + +G+R + + + ++T I Sbjct: 182 LDARNRIVSLTRYFIGMVLSVITGMRMGEVLGLRWSDIDFEKGYLTIRQTLAKIDDEGNY 241 Query: 234 ---------------------------TVELPDGFMKLLAMTPIGKETFFINNDKQKMNA 266 ++ ++L I + + ++ Sbjct: 242 GLVPEVKTAAGFRTVHLPKFFIEYLIEHKKMVQREKEILGEDYIDYDLVVCTKHGKWVHP 301 Query: 267 TQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324 + F + + K +R AT G + + G + TY+ Sbjct: 302 NNYRRAFTRLIAQLELPKIPPKNLRHTHATYLISIGISPKIVQERLGHAHIKTTLGTYSH 361 Query: 325 GA 326 Sbjct: 362 VL 363 >gi|108798958|ref|YP_639155.1| site-specific tyrosine recombinase XerC [Mycobacterium sp. MCS] gi|119868073|ref|YP_938025.1| site-specific tyrosine recombinase XerC [Mycobacterium sp. KMS] gi|123070325|sp|Q1BAI5|XERC_MYCSS RecName: Full=Tyrosine recombinase xerC gi|166918890|sp|A1UEH7|XERC_MYCSK RecName: Full=Tyrosine recombinase xerC gi|108769377|gb|ABG08099.1| tyrosine recombinase XerC subunit [Mycobacterium sp. MCS] gi|119694162|gb|ABL91235.1| tyrosine recombinase XerC subunit [Mycobacterium sp. KMS] Length = 300 Score = 109 bits (271), Expect = 9e-22, Method: Composition-based stats. Identities = 43/304 (14%), Positives = 96/304 (31%), Gaps = 39/304 (12%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSG---VES 125 +Y + ++R ++ + + D +T +R+ + Sbjct: 6 DAFDQYLALE--RGRSDHTRRAYLGDLRSLFAFCNERTPGADLGSLTLPVLRAWLSAQAA 63 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 ++ + ++++ WAVR+ +A +P ++ PK + ++ + Sbjct: 64 AGTARTTLARRTSAVKTFTAWAVRRGLMASDPATRLQMPKARRTLPAVLRQDQARDALDA 123 Query: 186 WSEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE 236 + G + RL E L +G+R S+ C + + + ++ K TV Sbjct: 124 ANSGAQQGDPLALRDRLIVEMLYATGIRVSELCGLDIDDVDTSRRLLRVLGKGDKQRTVP 183 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQK-----------MNATQFSIWFKAKATKAG-VNK 284 + + L + ++ + AG + Sbjct: 184 FGEPAEQALRAWLTSGRPALATAESGPALLLGARGRRLDPRQARTVVHETVGAVAGAPDI 243 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 HG+R +AT + GA + G T+ + YT R+ +V D Sbjct: 244 GPHGLRHSAATHLLEGGADLRIVQELLGHSTLATTQLYTHVT---------VARLRAVHD 294 Query: 345 SDDP 348 P Sbjct: 295 QAHP 298 >gi|315121780|ref|YP_004062269.1| site-specific tyrosine recombinase XerD [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495182|gb|ADR51781.1| site-specific tyrosine recombinase XerD [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 318 Score = 109 bits (271), Expect = 9e-22, Method: Composition-based stats. Identities = 44/267 (16%), Positives = 90/267 (33%), Gaps = 30/267 (11%) Query: 88 AVNSRISFESYFD--QIIRKSGDFDYRKITTKHIRSGVES---RKHTPSSAIQFLTSMRV 142 +VN+ S++S + Q+ D K ++ ++ + + RK SS + ++++R Sbjct: 29 SVNTLTSYKSDLEEVQLFLDDDDLLLSKASSDNLIAYLNHLSQRKLKASSQRRKISAIRQ 88 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-----------WSEGSQ 191 + + + NP +++ PK+ + K + + + Sbjct: 89 FYNFLCCEGLRKDNPSETLQFPKKNHTLPKTLHKNAIADLLKQAKIESEDPSPGQWKRIR 148 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250 L E L +G+R S+ L I K V + L M Sbjct: 149 MFLLIELLYSTGMRVSELVTLSSHTLNLEERIMIIKGKGNRERFVIFSPSSLCALQMYKK 208 Query: 251 GKETFFINNDKQKM----------NATQFSIWFKAKATKAGV---NKSAHGVRKFSATIS 297 T + + + + F+ K A++A + N S H +R A+ Sbjct: 209 MCSTMEMTKNSPWLFPSSTKTGHLSRQVFARDLKELASRASIQTKNISPHIIRHAFASHL 268 Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324 + GA + G + + YT Sbjct: 269 LEGGADLRTIQILLGHIDISTTQIYTH 295 >gi|332086087|gb|EGI91249.1| integrase [Shigella boydii 5216-82] Length = 312 Score = 109 bits (271), Expect = 9e-22, Method: Composition-based stats. Identities = 45/304 (14%), Positives = 91/304 (29%), Gaps = 18/304 (5%) Query: 28 GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87 G+RIR + Y + E+ + + L LI + K Sbjct: 6 RKGKRIR-KKFKTKSDAVLYERWVLAQQHNNEWKGNSIDRRP-LSVLIDLWWKYHGQLMR 63 Query: 88 A-VNSRISFESYFDQIIRKSGDFDYRKITTKH---IRSGVESRKHTPSSAIQFLTSMRVL 143 + N+ + ++ D K+ T +R + PS+ + + ++ + Sbjct: 64 SGHNTHLK----LLRLSEAMDDPCVHKLNTTMLTELRVYRIEQGIQPSTINREIGALSAM 119 Query: 144 FK-WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202 F ++ NP ++ K + +K + Q +E RLA E LL + Sbjct: 120 FTALISSGHFLNDNPVQGLKGMKVNEREMGYLSKSECVQLLDALAENPDERLAVEILLST 179 Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262 G R + + + + + K TV + + + + ++ Sbjct: 180 GARWGEVEALEQRRVLHCRITFSKTKNSKNRTVPISESLFEKIKKRGGKLVFPTLDYPL- 238 Query: 263 KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 K A ++ H +R A+ G L G + Y Sbjct: 239 ------VRDVIKTVAPDIPDGQAVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIY 292 Query: 323 TKGA 326 A Sbjct: 293 AHLA 296 >gi|283768118|ref|ZP_06341033.1| integrase [Staphylococcus aureus subsp. aureus H19] gi|283461997|gb|EFC09081.1| integrase [Staphylococcus aureus subsp. aureus H19] Length = 378 Score = 109 bits (271), Expect = 9e-22, Method: Composition-based stats. Identities = 46/385 (11%), Positives = 110/385 (28%), Gaps = 60/385 (15%) Query: 11 VTKERTRHGKIIYYF--------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62 + K + + G Y F G +R + L + ++N Sbjct: 2 IKKYKKKDGSTAYMFVAYLGTDPITGKQKRTTRRGFKTEREAKIAEAKLQTEVSQNGFLN 61 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKH 118 + TT K + + + ++ ++ ++ + D +KIT + Sbjct: 62 NDI---TTFKEVYELWLEQYQ-NTVREST---YQRVLTLFDTAILEHFQDVPIKKITVPY 114 Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG----IRPW 174 + + S +FK+AV + + NP + P++K + + Sbjct: 115 CQKVINKWNKKYSDIKAIRIYTSNVFKYAVSLKIIVDNPFAHTKAPRKKEAQQDASTKYY 174 Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-- 232 + ++++QF +F + F L ++G R + + +I KT Sbjct: 175 SSDELKQFLTFVEDDPLYYAIFRTLAFTGFRRGELMALTWNDIDFTKQTISINKTCARGA 234 Query: 233 ---------------------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMN 265 + ++ L + + N Sbjct: 235 NYKLVIQEPKTKSSHRTISIDDKTASVLKSWRTHQRVESLKYGHNTSDKHQHVFTTVRDN 294 Query: 266 ATQFSIWFKAKATKAGVNKSA-----HGVRKFSATISADAGATAHELMATYGWKTVDQAE 320 + S HG R ++ +AG + E+ G + Sbjct: 295 KQLYPEHCNKALDLICEKNSFKRIKVHGFRHTHCSLLFEAGLSIQEVQDRLGHGDIKTTM 354 Query: 321 -TYTKGADRIRLGIKNSRRISSVVD 344 Y ++ R + + + + ++ Sbjct: 355 DIYAHATEKQR--DQVADKFAKYIN 377 >gi|32474798|ref|NP_867792.1| integrase/recombinase Y4QK [Rhodopirellula baltica SH 1] gi|32445338|emb|CAD75339.1| putative integrase/recombinase Y4QK [Rhodopirellula baltica SH 1] Length = 461 Score = 109 bits (271), Expect = 9e-22, Method: Composition-based stats. Identities = 40/264 (15%), Positives = 87/264 (32%), Gaps = 14/264 (5%) Query: 80 KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 + AV++ ++ S + +R +I + IR +E +SA + + Sbjct: 73 RELRIRFYAVSTIKNYRSAWVCFLRWY-RGPLDQIDQEDIREYLELLVAGGASASEVSVT 131 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199 + L + + + + P++ + +K+++Q+ + +L L Sbjct: 132 LSALRTGLDKFCLL--RCTVGLVSPRKSKQLPVVMSKKEVQRMMEAA-RTLRDKLLLTVL 188 Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPDGFMKLLAMTPIGK----- 252 +GLR ++ R + I+ Q K V L D + L+ Sbjct: 189 YATGLRVAEVARLQWSDFDFDRQQIRVQLGKGKKDRYVMLADDLLPLMRQLWRHTKGVGY 248 Query: 253 -ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMA 309 + ++ K +G+ K + H R AT ++G + Sbjct: 249 LFPSEGRRVDRHLSPRTIQRAVKQARILSGIGKAVTPHSFRHSFATHLIESGTDIRFIQK 308 Query: 310 TYGWKTVDQAETYTKGADRIRLGI 333 G ++ YTK A + Sbjct: 309 LLGHTNLETTSLYTKVARMKATAV 332 >gi|306817826|ref|ZP_07451565.1| phage integrase family protein [Mobiluncus mulieris ATCC 35239] gi|304649305|gb|EFM46591.1| phage integrase family protein [Mobiluncus mulieris ATCC 35239] Length = 368 Score = 109 bits (271), Expect = 9e-22, Method: Composition-based stats. Identities = 46/367 (12%), Positives = 94/367 (25%), Gaps = 46/367 (12%) Query: 10 FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSAL------TGSTPKREYINS 63 +T+ R + G+++Y R G+ + + N Sbjct: 3 GITEIRHKDGRVVYRVRFRDGKTNASETFRNIETATYFRDLVKQFGGTAARNILDSRENP 62 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSG-DFDYRKITTKHIRS 121 TL + Y + A + + + + I K R +T + I + Sbjct: 63 DDTDTLTLGGIHQSYLEHAASYA-TPGTIARYRNMAASYIFPKIPPQTPIRALTRESIEN 121 Query: 122 GVESRKHTP---------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR-KTEGI 171 V + P + + + + LF + + + NP + P Sbjct: 122 YVTWLRAKPSRYGTSLKPRTIKRIVAFLSTLFNYQIEIGNLESNPARGIRIPNDAIPTQP 181 Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 T + +++ + FL +GLR ++ + +I K Sbjct: 182 VFLTPQQVEKIADNC---GYYGVLVRFLYATGLRFGEATALTPADVNVKTRTITVSKAWK 238 Query: 232 I------------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA---TQFS 270 TV + + LL + F + + F Sbjct: 239 QGEKSSDFYLGSPKTDTSTRTVLVSKSVIALLKPLLVEDAPFLFHPKTRPDRPLRNKTFR 298 Query: 271 -IWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADR 328 +K H +R + AG + G K + Y + Sbjct: 299 NCAWKQAVENMDPRPRIHDLRHSHVSRLIQAGIPLPVIQKRVGHKDIQTTINVYGHITPK 358 Query: 329 -IRLGIK 334 R Sbjct: 359 DARAAAD 365 >gi|170769298|ref|ZP_02903751.1| integrase [Escherichia albertii TW07627] gi|300901680|ref|ZP_07119738.1| site-specific recombinase, phage integrase family [Escherichia coli MS 198-1] gi|170121950|gb|EDS90881.1| integrase [Escherichia albertii TW07627] gi|300354904|gb|EFJ70774.1| site-specific recombinase, phage integrase family [Escherichia coli MS 198-1] Length = 330 Score = 109 bits (271), Expect = 9e-22, Method: Composition-based stats. Identities = 48/317 (15%), Positives = 102/317 (32%), Gaps = 21/317 (6%) Query: 14 ERTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 ++ + G+ R G+RIR + + + + + + P + L Sbjct: 4 KQLKDGRYQVDVRPQGAEGKRIR-KIFALKSKAQEFEKYVLQNFHDKPWQAKPADQRR-L 61 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT-- 129 L+ + S+ +++R+ GD ++T K + + Sbjct: 62 SELLDAWW---MLDGRNQAYGDSYRVRLGKVVREMGDPRASQMTRKFMLEYRSEKLQAGL 118 Query: 130 -PSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 PSS + L + +F + + + NP + + K + + + +++++ Sbjct: 119 MPSSINRDLCVLSTMFTVLIEAEVFHNANPVRGIRKLKVQNTEMAFLSDDEIERLLER-- 176 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247 R L +G R S++ +H+ N + K G +V + D + L+ Sbjct: 177 LEGDARRVAILCLSTGARWSEASELRGEHIVGNRVTFFNTKNGKSRSVPVADSVVPLIKT 236 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307 G F + ++ H +R AT G L Sbjct: 237 RRTGLLYQVDYLK--------FREILQEVKPDLPKGQATHVMRHTFATHFMMNGGNIVTL 288 Query: 308 MATYGWKTVDQAETYTK 324 G T+ Q TY Sbjct: 289 QRILGHATIQQTMTYAH 305 >gi|126737600|ref|ZP_01753330.1| tyrosine recombinase XerD [Roseobacter sp. SK209-2-6] gi|126720993|gb|EBA17697.1| tyrosine recombinase XerD [Roseobacter sp. SK209-2-6] Length = 328 Score = 109 bits (271), Expect = 9e-22, Method: Composition-based stats. Identities = 39/291 (13%), Positives = 90/291 (30%), Gaps = 41/291 (14%) Query: 90 NSRISFESYFDQIIRKSGDFD--YRKITTKHIRSG---VESRKHTPSSAIQFLTSMRVLF 144 N+ +++ + + I + ++ + ++ + L++++ ++ Sbjct: 27 NTLLAYGRDLKDAASWLFHRESGFATAQRADIEAYLIACDAEGLSRATRARRLSALKQIY 86 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-------WSEGSQPRLAFE 197 ++A + + + NP + + P R + + ++ + + + E Sbjct: 87 RFAFEEGWRSDNPAIQISGPGRDKKLPKTLEVIEVDRLLDAARQTGRSPEDRLRNCCLME 146 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKLLAMTPIGKETFF 256 L +G+R S+ V + + + K G V L LA ++ Sbjct: 147 LLYATGMRVSELVSLPVSSARGDPQMLLVLGKGGKERLVPLSPPARDALAAWLSVRDKAD 206 Query: 257 INNDKQKM----------------NATQFSIWFKAKATKAGVN---KSAHGVRKFSATIS 297 N + F + K A GV+ + H +R AT Sbjct: 207 EANRSKGHASSRFLFPSRGKAGHLTRHFFYLLIKDLAVTGGVDPEKVTPHTLRHAFATHL 266 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 GA + G + E YT + R+ +V P Sbjct: 267 LANGADLRAIQTLLGHADIATTEIYTHVLE---------ARLQELVMDHHP 308 >gi|218260320|ref|ZP_03475692.1| hypothetical protein PRABACTJOHN_01354 [Parabacteroides johnsonii DSM 18315] gi|218224605|gb|EEC97255.1| hypothetical protein PRABACTJOHN_01354 [Parabacteroides johnsonii DSM 18315] Length = 397 Score = 109 bits (271), Expect = 9e-22, Method: Composition-based stats. Identities = 62/396 (15%), Positives = 118/396 (29%), Gaps = 62/396 (15%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRL----PYPHESTFIPAYMSALTGSTPKRE 59 L+ P + ++ +G Y G IR + F+ Y+ K Sbjct: 9 KLKEPVRIRFKQLANGNQSIYLDYYTGDVIRKENYVGGKRQYEFLKLYL-----IPEKTR 63 Query: 60 YINSPRKKPTTLKWLIS-------------------------EYR---KSAHWGSLAVNS 91 + + L I +Y +S ++N Sbjct: 64 EDKAKNEATLALAKAIQSKKIVELQNDAHGFQNTNKSKANVIDYLMGIRSQSKERGSLNY 123 Query: 92 RISFESYFDQIIRKSGD-FDYRKITTKHIRSGVESRKH----------------TPSSAI 134 + + ++ GD +R I + S V+ K + +S I Sbjct: 124 EKTVGNTIRELKLFRGDYIAFRDIDKDFLNSFVDFLKQAKKASKFGLLKTGGVLSNNSVI 183 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT---EGIRPWTKEDMQQFKSFWSEGSQ 191 + +R A ++ + +NP + + T ++++ + Sbjct: 184 AYYGVLRTAINRAYKEGIITVNPTKEFDFASKVKAEVSRREYLTIDELKLLIGTECKYEI 243 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPI 250 + AF F GLR SD + LQ + I+ K + L P Sbjct: 244 MKQAFLFSCLCGLRVSDIRKLKWNDLQKSGERIRIEIKMQKTKEPLYLPISDEALKWLPQ 303 Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELM 308 E + + + + A AGV + S H R AT+ GA + + Sbjct: 304 QNEAKGDDLIFPLTHEGTINKILQKWAKDAGVIKHISFHVARHTHATMMLTLGADLYTVS 363 Query: 309 ATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 G K + + Y K D+ + + I ++ D Sbjct: 364 KLLGHKNIATTQIYAKIVDKKK--EEAVSLIPNLTD 397 >gi|295107573|emb|CBL05116.1| Site-specific recombinase XerD [Gordonibacter pamelaeae 7-10-1-b] Length = 364 Score = 109 bits (271), Expect = 9e-22, Method: Composition-based stats. Identities = 53/369 (14%), Positives = 108/369 (29%), Gaps = 42/369 (11%) Query: 12 TKERTRHGKIIYY--FRKGHGRRI--RLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67 ++ R G + + G I T A+ + N R Sbjct: 3 VRKDERRGTWLVKLHYTNHDGETIDSTKRGFKTKTDALAW--------ERDFLANEARST 54 Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR 126 T + + Y + L + S E +++I G IT++ I + Sbjct: 55 SMTFEQFVKVYAEDVRPR-LRETTWRSKEYMISEKLIPFFGKMRVVDITSRDIMDWQNTL 113 Query: 127 ---------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS-VERPKRKTEGIRPWTK 176 K++ + + + AV+ + NP +++ ++ WT Sbjct: 114 LKAKDKNGKKYSETYIRTVENQLSAILNHAVKHYGLPSNPLQKAGRVGEKQGNEMKFWTT 173 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI------------ 224 E+ +F + + A+E L + GLR + + + +I Sbjct: 174 EEYLKFSEQVVDRPEMFYAYEILYWCGLREGELLALTAKDIDTKNRTISVTKSYSRLNGR 233 Query: 225 ----KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280 K + + + LP + L + N + K A A Sbjct: 234 DIIGKPKTKKSERVIALPRFLAQELQEYMEMEREPNENERLFPFTKYALNNTLKTAAKLA 293 Query: 281 GVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSRR 338 GV H +R ++ + G TA + G ++V Y ++ R Sbjct: 294 GVKEIRVHDLRHSHVSLLINLGFTAVAIADRMGHESVHITYRYAHLFPNQQRNMADVLDA 353 Query: 339 ISSVVDSDD 347 + + Sbjct: 354 LMNARGEGH 362 >gi|157960209|ref|YP_001500243.1| tyrosine recombinase XerC [Shewanella pealeana ATCC 700345] gi|157845209|gb|ABV85708.1| tyrosine recombinase XerC [Shewanella pealeana ATCC 700345] Length = 304 Score = 109 bits (271), Expect = 9e-22, Method: Composition-based stats. Identities = 33/281 (11%), Positives = 88/281 (31%), Gaps = 22/281 (7%) Query: 71 LKWL--ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-YRKITTKHIRSGVESRK 127 ++WL Y ++ ++ + ++ ++ + + D + + + +++ + Sbjct: 10 VRWLTDFERYLRTE--RQVSAYTVRNYLFELKRVEKLFSETDSWLSLQHESLQAMLAKLH 67 Query: 128 HTPSSAIQFLTSM---RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW---TKEDMQQ 181 S ++ + +++ +R++ + +NP +S+ PK+ + + + Sbjct: 68 RKGLSPRSLSLTLSSLKQFYEFLLREQQIKVNPAISLTAPKQGKPLPKNMDVDSVSHLLD 127 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDG 240 + + E SGLR ++ V +Q + K V + Sbjct: 128 LDGDDPLSLRDKAIMELFYSSGLRLAELAALNVGDIQFSQAQVKVLGKGSKERIVPIGKL 187 Query: 241 FMKLLAMTPIGKETFFINNDKQKMN-------ATQFSIWFKAKAT--KAGVNKSAHGVRK 291 + + K +D + G+ H +R Sbjct: 188 ALTAINQWLDIKRDIACEDDALFVTAKGKRLAHRSIQARLAKWGQEQAIGIKVHPHKLRH 247 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 AT ++ A + G + + YT D L Sbjct: 248 SFATHMLESSADLRAVQELLGHANLSTTQVYT-SLDFQHLA 287 >gi|319938811|ref|ZP_08013175.1| phage integrase family Site-specific recombinase [Streptococcus anginosus 1_2_62CV] gi|319811861|gb|EFW08127.1| phage integrase family Site-specific recombinase [Streptococcus anginosus 1_2_62CV] Length = 385 Score = 109 bits (271), Expect = 9e-22, Method: Composition-based stats. Identities = 52/385 (13%), Positives = 103/385 (26%), Gaps = 52/385 (13%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63 ++ K R IY G + Y + + + Sbjct: 9 KKSKSGYLYKVR------IYRVIDGKRQDFFKSGFKSLREARQYEAMIYHKKASGDLSGL 62 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF--DQIIRKSGDFDYRKITTKHIRS 121 R + E+ K+ + + + I+ G+ KIT H + Sbjct: 63 LRASERRFDEVFEEWFKT--YQNTVERTTSVRTDDLFRIHILPVLGNMKISKITPWHCQD 120 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + + T + Q + +F +A++ + + NP PKR+ + + + Sbjct: 121 FITEKGQTFRNIKQVKSYTSQVFDFALKMKLITDNPMKQTILPKRERKKSDNFFSVEELH 180 Query: 182 FKSFWS---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF---------------- 222 E + F L YSGLR + + + Sbjct: 181 EFLAIIKAEEPYKNYALFRLLAYSGLRKGELYSLRWSDIDFDNQLLSISKNLGRIKGKAV 240 Query: 223 SIKTQKTGTIITVELPDGFMKLLAMT-------------------PIGKETFFINNDKQK 263 T+ +I + L + +L + + Sbjct: 241 EKSTKNRFSIRQIPLDTETVSILKEWKQKSRREKGQLSVTPLIGSDYMFTFVDRDGKIEP 300 Query: 264 MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ET 321 + + K K G+ K + HG R AT+ + G G + +T Sbjct: 301 LYQDYINSVLKRIIRKHGLKKITPHGFRHTHATLMIEVGVDPVNAAKRLGHASSQMTLDT 360 Query: 322 YTKG--ADRIRLGIKNSRRISSVVD 344 Y+ A + K + S Sbjct: 361 YSHSTVAGEKKAITKFVDYLDSAKG 385 >gi|91209996|ref|YP_539982.1| putative phage integrase [Escherichia coli UTI89] gi|91071570|gb|ABE06451.1| putative phage integrase [Escherichia coli UTI89] Length = 330 Score = 109 bits (271), Expect = 9e-22, Method: Composition-based stats. Identities = 48/317 (15%), Positives = 102/317 (32%), Gaps = 21/317 (6%) Query: 14 ERTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 ++ + G+ R G+RIR + + + + + + P + L Sbjct: 4 KQLKDGRYQVDVRPQGAEGKRIR-KIFALKSKAQEFEKYVLQNFHDKPWQAKPADQRR-L 61 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT-- 129 L+ + S+ +++R+ GD ++T K + + Sbjct: 62 SELLDAWW---MLDGRNQAYGDSYRVRLGKVVREMGDPRASQMTRKFMLEYRSEKLQAGL 118 Query: 130 -PSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 PSS + L + +F + + + NP + + K + + + +++++ Sbjct: 119 MPSSINRDLCVLSTMFTVLIEAEVFHNANPVRGIRKLKVQNTEMAFLSDDEIERLLER-- 176 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247 R L +G R S++ +H+ N + K G +V + D + L+ Sbjct: 177 LEGDARRVAILCLSTGARWSEASELRGEHIVGNRVTFFNTKNGKSRSVPVADSVVPLIKT 236 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307 G F + ++ H +R AT G L Sbjct: 237 RRTGLLYQVDYLK--------FREILQEVKPDLPKGQATHVMRHTFATHFMMNGGNIVTL 288 Query: 308 MATYGWKTVDQAETYTK 324 G T+ Q TY Sbjct: 289 QRILGHATIQQTMTYAH 305 >gi|317055535|ref|YP_004104002.1| integrase family protein [Ruminococcus albus 7] gi|317057168|ref|YP_004105635.1| integrase family protein [Ruminococcus albus 7] gi|317133858|ref|YP_004089769.1| integrase family protein [Ruminococcus albus 7] gi|319788794|ref|YP_004090109.1| integrase family protein [Ruminococcus albus 7] gi|315447804|gb|ADU21368.1| integrase family protein [Ruminococcus albus 7] gi|315449437|gb|ADU23001.1| integrase family protein [Ruminococcus albus 7] gi|315450320|gb|ADU23883.1| integrase family protein [Ruminococcus albus 7] gi|315450661|gb|ADU24223.1| integrase family protein [Ruminococcus albus 7] Length = 334 Score = 109 bits (271), Expect = 9e-22, Method: Composition-based stats. Identities = 41/300 (13%), Positives = 84/300 (28%), Gaps = 36/300 (12%) Query: 74 LISEYRKS--AHWGSLAVNSRISFESYFDQIIRK-------SGDFDYRKITTKHIRSGVE 124 I Y S + N+ S+ F +++ +I + + Sbjct: 8 YIQRYFMSYLMKQHNYGPNTVSSYRDTFKLLLKFMSESGKSISKKTVDEIDCDVVLKFLS 67 Query: 125 S----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 RK+ + L ++ F++ + C + E R Sbjct: 68 WLSNVRKNGVPTQNVRLAHIKSFFRYVMMISPEYSGQCSEILSIPFAKEDKRLPDCMSTD 127 Query: 181 QFKSF-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGT 231 K +EG + + S R + V+ Q K Sbjct: 128 AIKQMLSSIDSSSNEGLRHLAILSLMYDSACRVQEIISLDVKDFQPGQCCRIYVHGKGNK 187 Query: 232 IITVELPDGFMKLLAMTP-----IGKETFFINNDKQKMNATQFSIWFKAKATKAG----- 281 T+ L K+++ + + F N + ++ + + A Sbjct: 188 YRTIPLLGKTEKIISKYIRQFGLMQESPMFCNRNGDRLTRQGIRYIIRKYSKLANDTVPG 247 Query: 282 -VNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETY-TKGADRIRLGIKNSR 337 + S H +R AT D G + + G ++V + Y + + IR I+ Sbjct: 248 IITGSVYPHRLRHSKATHLVDNGVNIYNVRDFLGHESVATTQIYLSTNPEVIRKAIETVA 307 >gi|256851408|ref|ZP_05556797.1| Lj965 prophage integrase [Lactobacillus jensenii 27-2-CHN] gi|260660829|ref|ZP_05861744.1| Lj965 prophage integrase [Lactobacillus jensenii 115-3-CHN] gi|282933142|ref|ZP_06338529.1| prophage integrase [Lactobacillus jensenii 208-1] gi|256616470|gb|EEU21658.1| Lj965 prophage integrase [Lactobacillus jensenii 27-2-CHN] gi|260548551|gb|EEX24526.1| Lj965 prophage integrase [Lactobacillus jensenii 115-3-CHN] gi|281302646|gb|EFA94861.1| prophage integrase [Lactobacillus jensenii 208-1] Length = 375 Score = 109 bits (271), Expect = 9e-22, Method: Composition-based stats. Identities = 50/369 (13%), Positives = 111/369 (30%), Gaps = 42/369 (11%) Query: 11 VTKERTRHGKIIYYFRKGHGRRI-RLPYPHESTFIPAYMSALTGSTP--KREYINSPRKK 67 + + ++G+ Y F+ GR I R+ ++ A + ++K Sbjct: 9 IKEYTLKNGEKRYMFKIFLGRNINRIKKETTRRGFKSFAEAEEAYNHLNIENVNDFVKQK 68 Query: 68 PTTLKWLISEYRKSAH---WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 T+ + + S A + I++ I G+ KI+ + ++ + Sbjct: 69 QITINQMYEIWFARYRTTVKESTANKTAINYRV---HIKPFFGNAYMDKISVRDVQLWAD 125 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK- 183 + +R +++A+R YV+INP S+ P + + R + + Sbjct: 126 KLATKLVKFNDPIFILRSFYEYAIRMNYVSINPVGSIIMPVKTSRPRRNVEDNVYSRKEL 185 Query: 184 -----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI----------------F 222 + F+ L +GLR S++ + Sbjct: 186 ELFLQVAKEYNLRAYTYFKLLASTGLRKSEALALTWSDIDFINGVIDVNKTLAVGLDNKV 245 Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS-----IWFKAKA 277 ++ K+ + I + + E S W +A Sbjct: 246 QVQPPKSKSSIRQVPISANLANVLNEYKNSEKILSAKVFHTYTGKYLSLSKPMKWLEAIY 305 Query: 278 TKAGVNK---SAHGVRKFSATISA-DAGATAHELMATYGWKTVDQA-ETYTKGADR-IRL 331 KA + + HG R AT+ + + G + + YT ++ + Sbjct: 306 NKAPKDLKHITVHGFRHTFATLLISETNVKPKTVQMLLGHSNIQMTLDIYTHINNKNKKE 365 Query: 332 GIKNSRRIS 340 + + Sbjct: 366 AVNVLNELD 374 >gi|157149671|ref|YP_001449679.1| phage integrase family site specific recombinase [Streptococcus gordonii str. Challis substr. CH1] gi|157074465|gb|ABV09148.1| site-specific recombinase, phage integrase family [Streptococcus gordonii str. Challis substr. CH1] gi|327460667|gb|EGF07002.1| phage integrase family site-specific recombinase [Streptococcus sanguinis SK1] Length = 384 Score = 109 bits (271), Expect = 9e-22, Method: Composition-based stats. Identities = 57/366 (15%), Positives = 108/366 (29%), Gaps = 55/366 (15%) Query: 11 VTKERTRHGKIIYYF-------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63 + K +T+ G I+YY G +R Y + L Sbjct: 3 IHKYKTKKG-ILYYVSFYIGLDAYGKKKRHLKRGFKTKKEAKLYEARLEAGVVAPTVSTD 61 Query: 64 PRKKPTTLKWLISEYRKSAH---WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 T K L E+ + + + ++ + I+ GD +I+ + Sbjct: 62 KPNPKVTYKELYQEWFNAYVGTVEETTSSQTKNIYRI---HILPIFGDKFIDQISPLDCQ 118 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-IRPWTKEDM 179 + + + T + Q + +F +A+ Y+ NP +V PK K W+ E++ Sbjct: 119 NFITQKSQTFKNIKQIKSYTSKIFDFAINMNYIDRNPMKNVIMPKIKKTRSDNFWSLEEL 178 Query: 180 QQFKSFWSEGSQPRLAFEFLL--YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----- 232 F E + F L +SGLR + + + + K+ Sbjct: 179 HHFLDIVKETEPFKHFALFRLLAFSGLRKGELYALKWADINFDSNLLNIDKSLGRIDGKA 238 Query: 233 -----------ITVELPDGFMKLLAMTP--------------------IGKETFFINNDK 261 T+ L D + L+ N+ Sbjct: 239 IEKSTKNESSVRTIYLDDETIDLIKQWRNFYLKEQSQLPLTKLNISDEYMFSYISSNDKI 298 Query: 262 QKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA- 319 + ++A + K + S HG R AT+ ++ G G + Sbjct: 299 EPLHADYINNVLNRIIKKHKLKPISPHGFRHTHATLMSEIGIDPSNTSKRLGHASSQVTL 358 Query: 320 ETYTKG 325 + YT Sbjct: 359 DVYTHT 364 >gi|66395818|ref|YP_240184.1| ORF011 [Staphylococcus phage EW] gi|62636240|gb|AAX91351.1| ORF011 [Staphylococcus phage EW] Length = 344 Score = 109 bits (271), Expect = 9e-22, Method: Composition-based stats. Identities = 37/347 (10%), Positives = 99/347 (28%), Gaps = 27/347 (7%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 + G+ Y + +G+R R S L Y N TL Sbjct: 3 VRKRGETYQYDFRLNGKRYRKGGFKTKRLARMAESELMMDIEDGLYNNDS----ITLAQY 58 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVESRKHTPS-- 131 Y + + ++ + + G + IT ++ + Sbjct: 59 FKNYVGVYNESHHSKSTVANMIGRLKSVENHTLGHIPLKNITRLQYQTFINDYGKDHVQD 118 Query: 132 SAIQFLTSMR-----VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 S + +++ +F+ V++++ S + K + E ++ + Sbjct: 119 STRKMHRAIKNCVQDAIFEGIVKRDFTHNVTPKSNKNSKEEKEKYFEVSEYKKLKE-LTK 177 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-------KTGTIITVELPD 239 ++ ++ + ++ +G R S ++ ++ I + Sbjct: 178 TKSTRSYMVLFLMICTGARISGILNLKHSYIDKVNCTLYIDEKKTDTSPRYVQIGRDDMQ 237 Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISA 298 + + TPI + + ++ + +K ++H +R + Sbjct: 238 HLLNYIKSTPIDLSGYVFAEFGKVVSNAAVNKTLGKLCDALDTDKRTSHSLRHTHCSFLL 297 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGA------DRIRLGIKNSRRI 339 G + + + G K +D Y +L + + Sbjct: 298 SQGISIYYISKRLGHKNIDTTLKYYSHLLEDQYETESKLAVNAINNL 344 >gi|52424578|ref|YP_087715.1| site-specific tyrosine recombinase XerC [Mannheimia succiniciproducens MBEL55E] gi|81387473|sp|Q65V80|XERC_MANSM RecName: Full=Tyrosine recombinase xerC gi|52306630|gb|AAU37130.1| XerC protein [Mannheimia succiniciproducens MBEL55E] Length = 295 Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 36/271 (13%), Positives = 93/271 (34%), Gaps = 20/271 (7%) Query: 74 LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGVESRKHT 129 + +Y ++ + +++ D +++ + D R+++ +R + K + Sbjct: 4 YLQKYWNYLRNERQVSSYTLTNYQRQMDAVMKILQENDIQNWRQVSPSVVRFILAQSKKS 63 Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 S L+++R + V Q + +NP + + PK+ + E + + Sbjct: 64 GLHEKSLALRLSALRQFLAFLVLQGELKVNPAIGISAPKQGKHLPKNINAEQLNKLLDNN 123 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--------TQKTGTIITV 235 + + E + SGLR S+ + L I+ Sbjct: 124 SKEPIDLRDKAMLELMYSSGLRLSELQGLNLTSLNFRSREIRVLGKGNKERILPFGRHAS 183 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293 ++K+ + + F+++ +M+ + + G+ + + H +R Sbjct: 184 HSVQEWLKVRLLFNPKDDALFVSSLGNRMSNRSIQKRMEIWGVRQGLNSHLNPHKLRHSF 243 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324 AT +A + + G + + YT Sbjct: 244 ATQMLEASSDLRAVQELLGHSNLSTTQIYTH 274 >gi|315651213|ref|ZP_07904243.1| phage integrase family integrase/recombinase [Eubacterium saburreum DSM 3986] gi|315486509|gb|EFU76861.1| phage integrase family integrase/recombinase [Eubacterium saburreum DSM 3986] Length = 327 Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 37/294 (12%), Positives = 88/294 (29%), Gaps = 17/294 (5%) Query: 42 TFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ 101 + + + E + + + + + S +++ + Sbjct: 23 EKLQEVLQYVFADYELTEKQKQGKTSKQNF---VELFLSAKRIEGCSEKSLKYYKATIEA 79 Query: 102 IIRKSGDFDYRKITTKHIR----SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP 157 ++ + D + I T IR E +K + + + F W ++Y+ +P Sbjct: 80 MLNEL-QKDVKHIVTDDIRGYLTEYQEKKKSSKVTIDNIRRILSSFFAWLEDEDYILKSP 138 Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217 + + K T ++ E ++ + +E + + L +G+R + + Sbjct: 139 VRRIHKVKTGTNIKETYSDEALELMRDNCTE-LRDLAIIDMLASTGMRVGEMVLLNRNDI 197 Query: 218 QNNIF-SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI------NNDKQKMNATQFS 270 N I K V L + +++ Sbjct: 198 DFNERECIVFGKGSKERVVYFDARTKIHLQNYLNSRIDDNPALFVSLKEPHKRLKIGGIE 257 Query: 271 IWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + + K G+ H R+ AT++ D G +L G + +D Y Sbjct: 258 VRLREYGKKLGLQKVHPHKFRRTLATMAIDKGMPIEQLQQLLGHRKIDTTLQYA 311 >gi|255068446|ref|ZP_05320301.1| tyrosine recombinase XerC [Neisseria sicca ATCC 29256] gi|255047288|gb|EET42752.1| tyrosine recombinase XerC [Neisseria sicca ATCC 29256] Length = 303 Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 33/269 (12%), Positives = 87/269 (32%), Gaps = 19/269 (7%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGVESRKHTP- 130 + Y K + ++ ++ +++ K + + + + ++ Sbjct: 10 LDGYLKMLGQQGKSAHTLSAYGRDLTELVRLLTKGSSETAQDLKRRDFVAALKRLSQQGL 69 Query: 131 --SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + + L++ R W V+ + +P +++ + + +E++ Sbjct: 70 SERTLARKLSAWRQYCGWLVQSGMMDNDPTFNLKASRLPERLPKALPQEELNHMLDSAPA 129 Query: 189 GS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243 + FE + SGLR S+ + + + + T K + L ++ Sbjct: 130 DDSLAVRDHALFELMYGSGLRLSEIHGLDLGDVLLDEGWVSVTGKGRKERQIPLSGKSVE 189 Query: 244 LLAMTPIGKETF------FINNDKQKMNATQFSIWFKAKATK--AGVNKSAHGVRKFSAT 295 L + F + ++ Q +A A + +G + S H +R A+ Sbjct: 190 ALRAYLSERVAADGETALFTGKNGTRLGQRQIQKRLQAWAVQQGSGQHISPHMMRHSYAS 249 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324 + + G + + YTK Sbjct: 250 HLLQSSRDIRAVQELLGHSNLSTTQIYTK 278 >gi|222152421|ref|YP_002561596.1| phage integrase [Streptococcus uberis 0140J] gi|222113232|emb|CAR40731.1| putative phage integrase [Streptococcus uberis 0140J] Length = 381 Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 47/382 (12%), Positives = 122/382 (31%), Gaps = 52/382 (13%) Query: 11 VTKERTRHGKIIYY------FRKGHGRRIRLPYPHESTFIPAYMSALTG-STPKREYINS 63 + + + + G I+Y + G++ R + L S Sbjct: 3 IIEYKKKDGTIMYRSQVYLGVDRITGKKSRTSVSGRTKKELKNNIKLAKFEFQANGETLS 62 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSG 122 + + T K L + + L S S S I+ G KIT+ +++ Sbjct: 63 KKVQVKTFKDLTDMWLVNYKLT-LKPQSYNSTVSMLNKHILPYFGKMKLDKITSSDVQTF 121 Query: 123 VESRKHTPSSAIQF--LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK---- 176 + S + + + + + V + + NP + P+++ + Sbjct: 122 INSLSKK--TINYVNARSIISRILQHGVLLQLIQHNPARDIVLPRKQKKDSDKVKFIEKD 179 Query: 177 ------EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----NNIFSIKT 226 + ++++K + + + ++ LL +GLR ++C + Sbjct: 180 DLKKFLDYIEKYKLRNYKTNFNYVLYKLLLATGLRIGEACALEWSDIDLINGTINIDKTY 239 Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM-----------------NATQF 269 K+ ++ +L+++ + +Q+ F Sbjct: 240 SKSIRRLSTTKSKSGTRLISIDQATVNMLKLYQVRQRQLFHEVGGKAPKVVFATPTRKYF 299 Query: 270 SIWFK-----AKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETY 322 + + +AG+ + + H R A++ +AG + EL G + + Y Sbjct: 300 HTFVRQNALDRACIEAGIPRFTFHAFRHTHASLLLNAGISYKELQYRLGHSNIAMTLDVY 359 Query: 323 TKGA-DRIRLGIKNSRRISSVV 343 + + D+ + + + + + Sbjct: 360 SHLSKDKEKEAVSYFEKAINSI 381 >gi|148360858|ref|YP_001252065.1| site specific recombinase [Legionella pneumophila str. Corby] gi|296106078|ref|YP_003617778.1| Site-specific recombinase XerD [Legionella pneumophila 2300/99 Alcoy] gi|148282631|gb|ABQ56719.1| site specific recombinase [Legionella pneumophila str. Corby] gi|295647979|gb|ADG23826.1| Site-specific recombinase XerD [Legionella pneumophila 2300/99 Alcoy] Length = 407 Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 52/374 (13%), Positives = 94/374 (25%), Gaps = 59/374 (15%) Query: 18 HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALT----GSTPKREYINSPRKKPTTLKW 73 G + Y + G++I L T A A+ + KP TL+ Sbjct: 37 SGTMRYVCQYKRGKKINLGTVGVMTAAQAREKAIEVLSNANKGIEPTAQKGINKPKTLQE 96 Query: 74 LISE----YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--- 126 I + S H + + +IT + R Sbjct: 97 FIESDYKPWVLSTHKRGQE--TLAGLIRCYKAFF----SKPLGEITPALVEQWRVKRLNE 150 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT------------------ 168 + ++ + ++ ++ L AV ++ N ++ K Sbjct: 151 GTSQATLNRNISMLKSLMTKAVEWGFLKENALGKLKPYKIDRSPKIRYLSFAEEARLREA 210 Query: 169 --EGIRPWTKEDMQQFKSFWSEGSQ-----------PRLAFEFLL--YSGLRCSDSCRAG 213 E G L LL +GLR + Sbjct: 211 LIERDNQLRLMRKNGNLWREKRGYDLLPELSEDNACDYLMPMVLLSINTGLRRGELFHLT 270 Query: 214 VQHLQNNIFSIK----TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA--T 267 + + S+ K + L D K+L E K N Sbjct: 271 WDMVNLSEGSLILSGEITKNKHSRYIPLNDEAYKILDNLHKKAERKEGLVFPSKNNQPFN 330 Query: 268 QFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 + + KA + H +R A+ AG + + G + Y A Sbjct: 331 HVKRSWGSLLKKANITQFRWHDLRHHFASKLVMAGVDLNTVRELLGHSDIAMTLRYAHLA 390 Query: 327 DRIRLGIKNSRRIS 340 + + R+I Sbjct: 391 PEHK--VNAVRKID 402 >gi|32472343|ref|NP_865337.1| integrase/recombinase Y4QK [Rhodopirellula baltica SH 1] gi|32443579|emb|CAD73021.1| putative integrase/recombinase Y4QK [Rhodopirellula baltica SH 1] Length = 348 Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 38/290 (13%), Positives = 78/290 (26%), Gaps = 31/290 (10%) Query: 80 KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQ 135 + H A + + Q+ +G ++ +H+R R S Sbjct: 61 EDLHLTGKAKRTHDGYIRAVRQLSDFAGCSP-DQVNEQHVRQFFLHLKNDRNFAYGSLRV 119 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195 + ++ F ++++ I + T T E + + + + + Sbjct: 120 AFSGIKFFFTHTCKRDWEIIKMLK----LQNITTLPEVLTIEQVHE-LIGSATTQRMFVY 174 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLLAMTPIGKE 253 F + GLR +++ V + + + V LP ++LL Sbjct: 175 FWTVYSLGLRLNEALHLQVSDIDAERGWVHVHRGKGAKDRYVPLPTTTVRLLRNYWASHR 234 Query: 254 TFFINND----------------KQKMNATQFSIWFKAKATKA--GVNKSAHGVRKFSAT 295 M+ T K G S H +R AT Sbjct: 235 HPSFLFPADGRKHDLAKDGVSEATTPMSETAVQGAMKQITKNLRFGKKVSIHTLRHSYAT 294 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRL-GIKNSRRISSVVD 344 +AG + G ++ Y D + R+ + Sbjct: 295 HLLEAGVGLKVIQKYLGHSSLQTTMVYLHLTDTAEANAREEIERLFGSLP 344 >gi|320180132|gb|EFW55072.1| Putative integrase [Shigella boydii ATCC 9905] Length = 345 Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 56/335 (16%), Positives = 101/335 (30%), Gaps = 39/335 (11%) Query: 6 RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65 +LPP V + Y + R + + A K E + R Sbjct: 12 KLPPNVYPNK-------YSYVWKPTSRESVTLTAIKDGLAALWK-------KYEETVNNR 57 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 + T L ++ SA++ L+ ++ + + +++ G I +HIR ++ Sbjct: 58 DRAMTFGRLWEKFLASAYYSDLSPRTQKDYLQHQKKLLAVFGKVPADSIKPEHIRRYMDK 117 Query: 126 RK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 R + + A +SM ++ W + YV NPC V + K K KE Sbjct: 118 RGEQSKTQANHEKSSMSRVYSWGYERGYVKANPCAGVSKFKAKNRERYVTDKEYQAVLSV 177 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 +A E R SD + + N+ I+ KTG Sbjct: 178 AP---LPVFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAA 234 Query: 245 LAMTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAGV------NKSAHGVRKFSATI 296 + N + F+ + +AG + + H + Sbjct: 235 IEKAKQLPTSAYVISNQYGNRYMYKGFNEMWVEARNRAGKISGILTDFTFHDL------- 287 Query: 297 SADAGATA-----HELMATYGWKTVDQAETYTKGA 326 G + + G KT Q Y + Sbjct: 288 -KAKGISDYEGSSRDKQLFSGHKTEGQVLIYDRKV 321 >gi|295105592|emb|CBL03136.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii SL3/3] Length = 398 Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 47/306 (15%), Positives = 91/306 (29%), Gaps = 46/306 (15%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD---------------------YR 112 I EY + + N+ S+ R + Sbjct: 23 IVEYVRYLEVIAGKSANTAFSYYCDLRSFSRFMKRRRGLVATDAEFKEIDPKGLDTAFWG 82 Query: 113 KITTKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRK 167 IT + I + SS + L S+ + + V Q ++ +P ++ PK+ Sbjct: 83 SITKEDIYEYLYFLNRECGNKKSSTARRLASLHGFYDYLVNQVNRLSEDPTAAIRPPKQD 142 Query: 168 TEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223 + T E S + L G+R ++ + + Sbjct: 143 KVLPKYLTAEQSISLLESTQTQSDFPERDYCMVVLFLNCGMRLAELVGMDLGDIDLEQRQ 202 Query: 224 IK-TQKTGTIITVELPDGFMKLLAMTPIGKETF-----------FINNDKQKMNATQFSI 271 I+ K V L D ++ L + + T K++++ + Sbjct: 203 IRLFGKGHKERMVYLNDACVEALQLYLRKRNTMEGLSPKEKAVFITRMRKERISNRRVEQ 262 Query: 272 WFKAKATKAGVN-KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD-R 328 AG+ S H +R +AT+ G L G +V + YT + + Sbjct: 263 LISGAMKAAGLKGFSTHKLRHTAATLMYQTGNVDILTLKQLLGHSSVGTTQIYTHLQEFQ 322 Query: 329 IRLGIK 334 +R I+ Sbjct: 323 VRSAIE 328 >gi|134300616|ref|YP_001114112.1| phage integrase family protein [Desulfotomaculum reducens MI-1] gi|134053316|gb|ABO51287.1| phage integrase family protein [Desulfotomaculum reducens MI-1] Length = 367 Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 43/328 (13%), Positives = 108/328 (32%), Gaps = 33/328 (10%) Query: 30 GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAV 89 G+++ A A T R+ + + + + K S+ Sbjct: 24 GKKVTKSKVFHGKKREAEQFAKIFETKLRKSLQPG--SQMLVSDYLDYWLKRIQP-SIEE 80 Query: 90 NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAV 148 + ++ + ++ GD + ++ ++ + K + +S + T+ R + AV Sbjct: 81 RTFKTYSWHLKRLKETLGDIELGELKVLLVQERLNELKDISETSVRKITTTFRTALRQAV 140 Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208 E + +P + + P+ + + + +++ +F + E + L L +G+R + Sbjct: 141 VWELLEKDPTVGLRLPRNPKKEKKVLSSDELIKFLNAAKEY-KYYLVLRILAVTGMRLGE 199 Query: 209 SCRAGVQHLQNNIFSIK---------------TQKTGTIITVELPDGFMKLLAMTPIGKE 253 + L + ++K + + TV + ++LL + Sbjct: 200 CLGLMWKDLNFDKGTMKILRSADSKTRKVLDKPKNDSSRRTVTIDKETVELLKTHRKKQA 259 Query: 254 TFF-----------INNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301 + + + + K KA + H +R + +I DAG Sbjct: 260 KRKVTSIRIEDELVFHVNGRPITHKAIDRTIKTALKKAELPMIRIHDLRHTAGSILLDAG 319 Query: 302 ATAHELMATYGWKTVDQA-ETYTKGADR 328 + + + G T Y+ R Sbjct: 320 YSLPTVSSLLGHSTPATTAAIYSHAIRR 347 >gi|212696176|ref|ZP_03304304.1| hypothetical protein ANHYDRO_00712 [Anaerococcus hydrogenalis DSM 7454] gi|212676805|gb|EEB36412.1| hypothetical protein ANHYDRO_00712 [Anaerococcus hydrogenalis DSM 7454] Length = 330 Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 40/316 (12%), Positives = 100/316 (31%), Gaps = 57/316 (18%) Query: 74 LISEYRKSAH-WGSLAVNSRISFESYFDQII----------------------------- 103 ++ +Y +L+ + + I Sbjct: 8 ILDDYLSYLKSIRALSEKTISEYRYDLINFIYYQILRKVYYNDKQNLNKDIEDENININK 67 Query: 104 ----RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPC 158 D + + + +I S+ + ++++R +K+ E + N Sbjct: 68 IFNKSFISDINIQDM-YSYISYLDNELNDNASTRSRKISALRSFYKYLHQEIEMIDNNIT 126 Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSEG------SQPRLAFEFLLYSGLRCSDSCRA 212 + PK + T + + +E ++ L +G+R S+ Sbjct: 127 EKLRNPKIQKRQPVYLTLSETELLLETINEEKNEFLRNRDMAIVFTFLTTGMRLSELVSV 186 Query: 213 GVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF---------FINNDKQK 263 + ++++ F+I + T+ L + L+ + ++ + FI+ K++ Sbjct: 187 DLNDIKDDHFTIIGKGN-KERTIYLTKNCIDLIDNYIMIRKNYLKDIKINALFISTRKKR 245 Query: 264 MNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQA 319 ++ KAG + S H +R +AT+ G L G ++V Sbjct: 246 ISNRAVQSTVDKYLKKAGFDTRVYSTHKLRHTAATLMYKYGNVDIRALKDVLGHESVSTT 305 Query: 320 ETYTKGADR-IRLGIK 334 + YT + ++ + Sbjct: 306 QIYTHLDNEDLKRAVN 321 >gi|160945174|ref|ZP_02092400.1| hypothetical protein FAEPRAM212_02693 [Faecalibacterium prausnitzii M21/2] gi|158442905|gb|EDP19910.1| hypothetical protein FAEPRAM212_02693 [Faecalibacterium prausnitzii M21/2] Length = 402 Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 46/306 (15%), Positives = 91/306 (29%), Gaps = 46/306 (15%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD---------------------YR 112 I EY + + N+ S+ R + Sbjct: 23 IVEYVRYLEVIAGKSANTAFSYYCDLRSFSRFMKRRRGLVATDAEFKEIDPKGLDTAFWG 82 Query: 113 KITTKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRK 167 IT + I + SS + L S+ + + V Q ++ +P ++ PK+ Sbjct: 83 SITKEDIYEYLYFLNRECGNKKSSTARRLASLHGFYDYLVNQVNRLSEDPTAAIRPPKQD 142 Query: 168 TEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223 + T E S + L G+R ++ + + Sbjct: 143 KVLPKYLTAEQSISLLESTQTQSDFPERDYCMVVLFLNCGMRLAELVGMDLGDIDLEQRQ 202 Query: 224 IK-TQKTGTIITVELPDGFMKLLAMTPIGKETF-----------FINNDKQKMNATQFSI 271 I+ K V L + ++ L + + T K++++ + Sbjct: 203 IRLFGKGHKERMVYLNNACVEALQLYLRKRNTMEGLSPKEKAVFITRMRKERISNRRVEQ 262 Query: 272 WFKAKATKAGVN-KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD-R 328 AG+ S H +R +AT+ G L G +V + YT + + Sbjct: 263 LISGAMKAAGLKGFSTHKLRHTAATLMYQTGNVDILTLKQLLGHSSVGTTQIYTHLQEFQ 322 Query: 329 IRLGIK 334 +R I+ Sbjct: 323 VRSAIE 328 >gi|328463791|gb|EGF35344.1| integrase [Lactobacillus helveticus MTCC 5463] Length = 384 Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 50/368 (13%), Positives = 116/368 (31%), Gaps = 49/368 (13%) Query: 11 VTKERTRHGKIIY----YF--RKGHGRRIRLPYPHESTFIPAYMSALT-GSTPKREYINS 63 + + T GK Y Y + G I++ + A + L + Sbjct: 5 IKEYTTPSGKKRYGFNLYVGVDETTGHSIQIRKQGYKSKKEAQEAYLNYQLKVIKGEYIP 64 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG 122 K T L + K ++ ++ + YF+ I+++ G K+T + Sbjct: 65 ESKGHITFNKLYRMWLKIYR-ETVKTSTYATTTRYFEDHILKQLGSKYIDKLTVLDCQKA 123 Query: 123 VE-SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 V P + +F+ + + + + ++ P + +P+T + Sbjct: 124 VNIWFNDAPKTYKRFMRYTNNVLNYGINNLELISKNPMNKVIPPKAKNKPKPFTDFYSKD 183 Query: 182 FKSFWSEGSQPRLAFEFLL-----YSGLRCSDSCRAGVQHLQNNI--------------- 221 + + ++ F+ YSG+R ++ + Sbjct: 184 ELNIFLRDAKEYNFKYFVFFRLLAYSGMRKGEALALKWSDINFKDNTISINKDVTVGLNN 243 Query: 222 --FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF---------- 269 + + + T+++ M+ L + ++ + +N+ Sbjct: 244 ELYEDTPKTENSFRTLDMDAATMEYLKEWRLMQQKTMLKLGYNFLNSDNLLFSTINNGYL 303 Query: 270 -----SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TY 322 W A K + + HG R A++ +AGA+ +E+ A G ++ Y Sbjct: 304 SMSKPRQWNVAICKKYDLRRIKIHGFRHTHASLLFEAGASMNEVKARLGHADINTTMNIY 363 Query: 323 TKGADRIR 330 T D + Sbjct: 364 THVTDDQK 371 >gi|291530765|emb|CBK96350.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3] Length = 357 Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 41/317 (12%), Positives = 95/317 (29%), Gaps = 55/317 (17%) Query: 73 WLISEYRKSAH-WGSLAVNSRISFESYFDQIIRK-------------SGDFDYRKITTKH 118 ++EY + + + +++ + +R + + K+ Sbjct: 16 ACLTEYLNYLTTIKNRSQLTALNYYTDLRMFMRFLKVKNKLVDANEDFSEIKISDLDDKY 75 Query: 119 IRSGV------------ESRKHTPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPK 165 I++ R + + + S+R +K+ + + A +P L++E P Sbjct: 76 IKAVTLTDAMEFLSFTVSERSNQAKARSRKAVSLRQFYKFLTNNKAWFAASPMLNLELPS 135 Query: 166 RKTEGIRPWTKEDMQQFKS------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219 K + T ++ Q + L G+R S+ V Sbjct: 136 PKNALPKHLTLQECGQLLHEGFKEFSSWMDYRDYAMIIMFLNCGMRLSELVGINVNDFVE 195 Query: 220 NIFSIKTQKTG----------TIITVELPDGFMKLLAMT--------PIGKETFFINNDK 261 NI + V L + + + ++ FI+ Sbjct: 196 NIDPSQPDVKYLSVKVLGKGNKERIVYLNEQCVDAVTKYTEARKSVADPKEKALFISKRG 255 Query: 262 QKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 ++ + + G+ S H +R +AT+ G L G + ++ Sbjct: 256 NRITNRRVEQIIDDRLKACGLAGKGISVHKLRHTAATLMYQNGVDVRVLKEVLGHENLNT 315 Query: 319 AETYTKGAD-RIRLGIK 334 + YT + ++R I Sbjct: 316 TQIYTHVVNTQLRDAIN 332 >gi|187929673|ref|YP_001900160.1| integrase family protein [Ralstonia pickettii 12J] gi|221067672|ref|ZP_03543777.1| integrase family protein [Comamonas testosteroni KF-1] gi|187726563|gb|ACD27728.1| integrase family protein [Ralstonia pickettii 12J] gi|220712695|gb|EED68063.1| integrase family protein [Comamonas testosteroni KF-1] Length = 399 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 54/368 (14%), Positives = 108/368 (29%), Gaps = 26/368 (7%) Query: 7 LPPFVTKERTRHGKI----IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62 L P + T G+ Y G R+ L E T A A R + Sbjct: 27 LVPGFLCKVTPAGRKVFMLQYRTNAGERRKPALGLYGELTVEQARSLAQEWLAEVRRGGD 86 Query: 63 SPRKKPT-----TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITT 116 K T+K L +++ + +++ +++ D+ I+ G + + Sbjct: 87 PSAAKAAARSAPTVKELCTKFMEDYSKQRNKPSTQRGYQAVIDRCIVPMLGRLKVQDVKR 146 Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + + ++ H P+ A + + MR +F A + P Sbjct: 147 PDVATAMKKMAHKPAEANRAFSVMRKMFNLAEVWGHRPDGTNPCRHVPMYPNGKATHLIS 206 Query: 177 EDMQQFKSFWSEGSQPR--------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228 ++ E + LA R S+ + + + Sbjct: 207 DEDMGKLFRRLEHIEAEGLENYVIPLAIRLQFEFAGRRSEIVTLRWDWVDLDNRRVVWPD 266 Query: 229 TGTIITVELPDGFMKLL-----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG-V 282 + T + L ++ + + ++ + AG Sbjct: 267 SKTGGMSKPMSEEAYRLLSTAPRQEGTPYVLPSPSHPGKHLTTGEYYGGWSRALKAAGAT 326 Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR--IRLGIKNSRRIS 340 + HG+R SAT A++G MA KTV Y D + + R Sbjct: 327 HVGTHGIRHRSATDIANSGIPVKVGMALTAHKTVAMFMRYVHTEDDPVRKAAELVANRRK 386 Query: 341 SVVDSDDP 348 ++ ++ P Sbjct: 387 TITEAQRP 394 >gi|331090315|ref|ZP_08339199.1| hypothetical protein HMPREF1025_02782 [Lachnospiraceae bacterium 3_1_46FAA] gi|330401450|gb|EGG81035.1| hypothetical protein HMPREF1025_02782 [Lachnospiraceae bacterium 3_1_46FAA] Length = 322 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 33/263 (12%), Positives = 84/263 (31%), Gaps = 14/263 (5%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----KH 128 + + + + + + + + K + R+ITT+ IR+ + + Sbjct: 46 DFLQMFLDAKRIEGCSERTIQYYRVTVEHLFSKM-NQSVRRITTEEIRTYLSDYQKINRC 104 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + + ++ F W ++Y+ +P + + K KT T E +++ Sbjct: 105 SNVTIDNIRRNISSFFSWLEEEDYILKSPMKRIHKIKTKTVVKSVITDEGIEK-LRDNCA 163 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAM 247 + + L +G+R + ++ + I K V L Sbjct: 164 EIRDLAIIDLLYSTGIRVGELVNLNIEDIDLEGRECIVYGKGDKERRVYFDAKAKVHLKE 223 Query: 248 TPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300 ++ + ++ + I + + +++ H R+ AT + D Sbjct: 224 YIEKRKDNSEALFVTLDAPHDRLKISGVEIRLRQLGRQLKLDRIHPHKFRRTMATRAIDK 283 Query: 301 GATAHELMATYGWKTVDQAETYT 323 G ++ G +D Y Sbjct: 284 GMPIEQVQKILGHSQIDTTMQYA 306 >gi|197363656|ref|YP_002143293.1| bacteriophage integrase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197095133|emb|CAR60680.1| probable bacteriophage integrase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 337 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 41/334 (12%), Positives = 88/334 (26%), Gaps = 38/334 (11%) Query: 14 ERTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 +T G+ + R G+RIR AY +T ++ ++ + L Sbjct: 4 RKTGSGEWLCDLRPTGVKGKRIR-RKFATKGEALAYEKYITSEMEEKPWLGEKQDNRR-L 61 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESY---FDQIIRKSGDFDYRKITTKHIRSGVES--- 125 LI + L + + I G+ +IT E Sbjct: 62 SELIELW------HDLYGRTLADSDRMMSKLKGICAGMGNPIAAQITAADFSKYREGRLK 115 Query: 126 ----------RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 P + ++ +F + + ++ LS + E + + Sbjct: 116 GEIPDVNGRCMPIQPQTVNHEQRNLSAVFGTLKKLGHWSLPNPLSGIPTFKVDEKMVSFL 175 Query: 176 KEDMQQFKSFWSEGSQ---PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 + + + S + + L +G R S++ + + K K+ + Sbjct: 176 YPEEIKTLLQYLSESNSPSVLIIAKICLATGARWSEAENLEGSQVTPYRITYKNTKSRKV 235 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKF 292 ++ + + T F + + H +R Sbjct: 236 RSIPISKELYNEMPKKRGQLFTPC---------RKTFERTVAKAGIELPEGQCTHVLRHT 286 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA 326 A+ G L G + Y A Sbjct: 287 FASHFMMNGGNILVLKEILGHSDIKMTMIYAHFA 320 >gi|167768052|ref|ZP_02440105.1| hypothetical protein CLOSS21_02596 [Clostridium sp. SS2/1] gi|167710381|gb|EDS20960.1| hypothetical protein CLOSS21_02596 [Clostridium sp. SS2/1] gi|291561050|emb|CBL39850.1| Site-specific recombinase XerD [butyrate-producing bacterium SSC/2] Length = 322 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 30/264 (11%), Positives = 85/264 (32%), Gaps = 14/264 (5%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT----TKHIRSGVESRK 127 + + + + + + ++ + ++ ++ + + RKIT ++ + Sbjct: 45 EEFLEMFLDAKRVEGCSERTIQYYKVTAEHMLSQT-EKEIRKITTDEMRSYLADYQKRNN 103 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + + ++ F W ++Y+ +P + + K KT T E ++Q + + Sbjct: 104 CSNVTIDNIRRNISSFFTWLEEEDYILKSPMRRIHKIKTKTVVKSVITDEGIEQLRDHCT 163 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLA 246 + + + L +G+R + + + V L Sbjct: 164 Q-IRDLAMIDLLYSTGIRVGELVNLNIGDINFEERECVVYGKGDKERRVYFDAKAKVHLM 222 Query: 247 MTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299 ++ + ++ + I + + G+ + H R+ AT + D Sbjct: 223 EYIESRKDKNPALFVTLDAPYDRLKISGVEIRLRQLGRELGLERIHPHKFRRTMATRAID 282 Query: 300 AGATAHELMATYGWKTVDQAETYT 323 G ++ G +D Y Sbjct: 283 KGMPIEQVQKILGHSQIDTTMQYA 306 >gi|254498340|ref|ZP_05111078.1| prophage dlp12 integrase [Legionella drancourtii LLAP12] gi|254352434|gb|EET11231.1| prophage dlp12 integrase [Legionella drancourtii LLAP12] Length = 331 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 50/333 (15%), Positives = 102/333 (30%), Gaps = 18/333 (5%) Query: 17 RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76 + I + G+R+R E Y A E T + Sbjct: 5 KRDGIWWVDIFHQGKRVRKSTGTEVKQDAEYFHAQLKHELWTEKQIKSIPNK-TWMDAVR 63 Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSA 133 + + + S + + + + + I I S + ++ + P++ Sbjct: 64 RWLEESAHK----RSLETDKIHLAWLDQHFRTKKLTDIDRDLIESIAKKKEQSNVSPTTV 119 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193 + L +R + A ++ + + K + IR T+ + Q S + Sbjct: 120 NRVLELVRAILNRAQKEWG-WLETLPVIRMRKVENRRIRWLTQNEASQLLK--ELPSHLK 176 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----GTIITVELPDGFMKLLAMTP 249 F L +GLR S+ + + I V L + +L Sbjct: 177 DMASFTLVTGLRESNVTQLKWSEIHLEKKHALIHADESKSKRPIPVPLSQQAIAILKDQI 236 Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308 T+ Q + + ++ +AG+ + H +R A+ G HEL Sbjct: 237 GKNPTYVFTYQGQPVTRCN-NHAWRKALERAGISDFRWHDLRHTWASWHVQNGTPLHELQ 295 Query: 309 ATYGWKTVDQAETYTK-GADRIRLGIKNSRRIS 340 GW T + Y ++ +R + +S Sbjct: 296 QLGGWSTYEMVLRYAHLSSEHLRTAAERIHDVS 328 >gi|225570002|ref|ZP_03779027.1| hypothetical protein CLOHYLEM_06097 [Clostridium hylemonae DSM 15053] gi|225161472|gb|EEG74091.1| hypothetical protein CLOHYLEM_06097 [Clostridium hylemonae DSM 15053] Length = 384 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 52/351 (14%), Positives = 106/351 (30%), Gaps = 38/351 (10%) Query: 21 IIYYFRKGHG-RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79 F RIR + + L S Y Sbjct: 32 WYCKFYYKDSLGRIRQKKKGGFRLQRD-----AREWERSFINQHEGSLDMSFSDLYSAYF 86 Query: 80 KSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE-----SRKHTPSSA 133 +S L ++ ++ ++ +I+ G+ +I IR + + Sbjct: 87 ESMKHR-LRDSTLLTKDNLIKTKILPYFGNIPINQIDPGAIREWQNIMCGQQMNNGKHYS 145 Query: 134 IQFLTS----MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQFKSFWSE 188 +L + + +F +AVR + NPCL+ +K G + W E+ F ++SE Sbjct: 146 STYLKAMNNQLSTVFNYAVRYYNLPSNPCLAAGSMGKKQAGQKTFWKPEEFHIFLEYFSE 205 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK----- 243 + L F L Y+G+R + ++ +K+ I K Sbjct: 206 NMEMYLIFSLLYYTGVRIGEMLAFSYDDFNLQKGTVTVRKSYRRIRKTDYITPPKTPKSF 265 Query: 244 ------------LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVR 290 L + + + ++ S + V K H +R Sbjct: 266 RVIALPAFLIEQLQKYFSLKEGSGMDERIFSGISRYHISKFMNEACENTKVKKIRIHDLR 325 Query: 291 KFSATISADAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLGIKNSRRI 339 A++ + G + + G + V+ Y+ R + ++ R+ Sbjct: 326 HSHASLLIELGVSPVLIAERLGHENVETTLNIYSHLYPHRQKELAESLDRL 376 >gi|160893903|ref|ZP_02074682.1| hypothetical protein CLOL250_01458 [Clostridium sp. L2-50] gi|156864281|gb|EDO57712.1| hypothetical protein CLOL250_01458 [Clostridium sp. L2-50] Length = 379 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 45/361 (12%), Positives = 104/361 (28%), Gaps = 46/361 (12%) Query: 18 HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77 +G + F GRR + + + +T E+ + + Sbjct: 19 NGLYVARFTDRFGRRKSKRF----KKLQECRQWIADATYIDEHSDLENATDMLVDAWFEY 74 Query: 78 YRKSAHWGSLAVNSRISF-ESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSA 133 + ++ N+ ++ E Y I + ++ H + + ++ Sbjct: 75 WID-LKKKTVRPNTVRNYSERYERNIKNVIENKLLTEVKPIHCQKIFSDMADEGYKTTTI 133 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLS-VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 Q ++ + ++A E + NPC V+ K + D Q+ ++G Sbjct: 134 YQTRIALYNMLEFAKENEVIITNPCKKSVKSDIGKPSDKKEALTIDDQRRFLAAAKGQSY 193 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG------------ 240 + F L +GLR + + + ++ +++ Sbjct: 194 EYQYRFALQTGLRTGELVGLKWEDINFERKTLTIERSMEFRYKVGEWRVGPPKSKSGYRT 253 Query: 241 -----------------FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 K+ + +T F+ Q + + + KAG+ Sbjct: 254 IPLTDEAICILKAQKEKNRKIKVIDKEWADTVFLCRKGQPVKNSTYDTALFKICDKAGIK 313 Query: 284 K-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR-----LGIKNS 336 + S H +R AT + G L G + Y + + L + Sbjct: 314 RFSMHVLRHTFATRCIEGGMMPKTLQKILGHSNIGITMNLYVHITEEEKQKEIDLVAEAL 373 Query: 337 R 337 + Sbjct: 374 K 374 >gi|319896531|ref|YP_004134724.1| hypothetical protein HIBPF01270 [Haemophilus influenzae F3031] gi|317432033|emb|CBY80381.1| phage integrase [Haemophilus influenzae F3031] Length = 337 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 42/330 (12%), Positives = 89/330 (26%), Gaps = 28/330 (8%) Query: 12 TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGS-TPKREYINSPRKKPTT 70 ++ T++GK + +G+R R + + + Y A G+ + Sbjct: 3 VRKDTKNGKWLAEV-YVNGKRSRKWFLTKGDALRFYNQAKEGAQSAVDSVTVLASDDLPV 61 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---- 126 L + + E+ H +L+ + + + GD + + + R Sbjct: 62 LSFYVQEWFD-VHGKTLSD--CEARLAKLKNLCANLGDPPANEFNAEIFADYRKRRLDGE 118 Query: 127 -------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 ++ + +R +F L R ++ E + E Sbjct: 119 FSVNKNKPPKEATVNREHAYLRAVFNELKSLRKWTAENPLDGVRLFKERETELAFLYERD 178 Query: 180 QQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 + S+ L L +G R S++ + + K+ TV Sbjct: 179 IYRLLVECDNSRNADLGLIVRICLATGARWSEAETLTQSQVMPYKITFTNTKSKKNRTVP 238 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296 + +L F + + H +R A+ Sbjct: 239 ISKELFDMLPKKRGRLFNDA---------YESFENAVLRAEIELPKGQLTHVLRHTFASH 289 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326 G L G T++ Y A Sbjct: 290 FMMNGGNILVLKEILGHSTIEMTMRYAHFA 319 >gi|298244075|ref|ZP_06967881.1| integrase family protein [Ktedonobacter racemifer DSM 44963] gi|297551556|gb|EFH85421.1| integrase family protein [Ktedonobacter racemifer DSM 44963] Length = 379 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 49/380 (12%), Positives = 107/380 (28%), Gaps = 52/380 (13%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 R G + G+R + AY ++ + TT + Sbjct: 3 RRKSDGLYVASITLEDGKRKTFAF---KKKADAYAKLREVQQNMQQGTFVTSSQQTT-EQ 58 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132 + + + +L S +E II + G + + +HI+ + S Sbjct: 59 FLMHWLEYTVKHTLRARSYERYEEIARLHIIPRLGKVKLQDLKPQHIQVLQAEKLEEGLS 118 Query: 133 AIQ---FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 A + AV+ + N C +V + K + ++P T + ++ + +G Sbjct: 119 ASTVGIIHQVLHKSLDDAVKLGLLGKNVCKAVPPSREKRKDVKPLTPDQSRKLLNAV-KG 177 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA--- 246 F L +G+R + + + ++T + + ++ +L Sbjct: 178 HPLEALFILALTTGMRRGELFALKWNDIDLEHGVLYVRRTLSRVPTKVRGENQDVLVEAE 237 Query: 247 -----------------------------------MTPIGKETFFINNDKQKMNATQFS- 270 + F +D ++ S Sbjct: 238 TKTQRSRRSIVLTLLAVEALIEHRLKQDEQHHIAGDAWQDNDYVFCAHDGTYLSPNHVSS 297 Query: 271 IWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADR 328 K AG+ H +R +AT+ + G + Y+ Sbjct: 298 YQLKQLLKAAGLPDIRFHDLRHGAATLLLSLQVHPKVVQEILGHSDISTTMNIYSHVLPS 357 Query: 329 IRLGIKNSRRISSVVDSDDP 348 + +++ S DDP Sbjct: 358 --MQADAMKQLHSAFKQDDP 375 >gi|323967241|gb|EGB62665.1| bacteriophage lambda integrase domain-containing protein [Escherichia coli M863] Length = 357 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 61/345 (17%), Positives = 110/345 (31%), Gaps = 23/345 (6%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63 LPP + R+ Y G+ L A + + + R Sbjct: 9 RRDLPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAVSEAIQANIELLSENRRESLI 65 Query: 64 PR---KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 R TL + Y + + + + S I RK D I+TK + Sbjct: 66 DRIKGADVITLHVWLDRYETILSERGIRPKTLLDYASKIRAIRRKLPDKPLADISTKEVA 125 Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + + + +SA +++ +F+ A+ + +VA NP + K + R E Sbjct: 126 TMLNTYVAEGKAASAKLIRSTLVDVFREAIAEGHVATNPVTATRTAKSEVRRSRLTANEY 185 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 ++ + + RLA + + +G R D CR + +N I+ KTG + + L Sbjct: 186 VEIYHAAEPLPIWLRLAMDLAVVTGQRVGDLCRMKWSDINDNHLHIEQSKTGAKLAIPLT 245 Query: 239 DGFMKL---------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NK 284 L ET + ++ S +F +G+ Sbjct: 246 LTIDALNISLADTLQKCREASSSETIIASKHHDPLSPKTVSKYFTKARNASGLSFDGDPP 305 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + H +R SA G K+ A Y R Sbjct: 306 TFHELRSLSA-RLYRNQIGDKFAQRLLGHKSDSMAARYRDSRGRE 349 >gi|269977663|ref|ZP_06184630.1| integrase [Mobiluncus mulieris 28-1] gi|269934266|gb|EEZ90833.1| integrase [Mobiluncus mulieris 28-1] Length = 368 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 46/367 (12%), Positives = 94/367 (25%), Gaps = 46/367 (12%) Query: 10 FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSAL------TGSTPKREYINS 63 +T+ R + G+++Y R G+ + + N Sbjct: 3 GITEIRHKDGRVVYRVRFRDGKTNASETFRNIETATYFRDLVKQFGGTAARNILDSRENP 62 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSG-DFDYRKITTKHIRS 121 TL + Y + A + + + + I K R +T + I + Sbjct: 63 DDTDTLTLGGIHQSYLEHAASYA-TPGTIARYRNMAASYIFPKIPPQTPIRALTRESIEN 121 Query: 122 GVESRKHTP---------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR-KTEGI 171 V + P + + + + LF + + + NP + P Sbjct: 122 YVTWLRAKPSRYGTSLKPRTIKRIVAFLSTLFNYQIEIGNLESNPARGIRIPNDAIPTQP 181 Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 T + +++ + FL +GLR ++ + +I K Sbjct: 182 VFLTPQQVEKIADNC---GYYGVLVRFLYATGLRFGEATALTPADVNVKTRTITVSKAWK 238 Query: 232 I------------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA---TQFS 270 TV + + LL + F + + F Sbjct: 239 QGEKSSDFYLGAPKTDTSTRTVLVSKSVIALLKPLLVEDAPFLFHPKTRPDRPLRNKTFR 298 Query: 271 -IWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADR 328 +K H +R + AG + G K + Y + Sbjct: 299 NCAWKQAVENMDPRPRIHDLRHSHVSRLIQAGIPLPVIQKRVGHKDIQTTINVYGHITPK 358 Query: 329 -IRLGIK 334 R Sbjct: 359 DARAAAD 365 >gi|227500720|ref|ZP_03930769.1| integrase [Anaerococcus tetradius ATCC 35098] gi|227217178|gb|EEI82527.1| integrase [Anaerococcus tetradius ATCC 35098] Length = 380 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 48/368 (13%), Positives = 110/368 (29%), Gaps = 45/368 (12%) Query: 1 MTPSLRLPPFVTKERTRHGKIIYY----FRKGHGRRIRLPYPHESTFIPAYMSALTGSTP 56 M +LP F R G ++ + G ++ T A Sbjct: 1 MQRRFKLPAF----RDESGNKTWFCKFNYTNWRGEKLTKKKRGFLTKKEAL------KWE 50 Query: 57 KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKIT 115 K + + Y++ + N+ + E+ +Q I+ GD +I Sbjct: 51 KEFLNQHSESIEMSFREFFELYKRDRKPR-IRENTWRTKEAIVNQKILPYIGDLMLNEIN 109 Query: 116 TKHIRSGVESR---------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 I K++P+ + + A R + N V Sbjct: 110 NVTIIQWQNELMKIKDNNGKKYSPTYLRTIHAQLSSILNHACRYYNLKTNVARDVGSMGE 169 Query: 167 KT-EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225 K + + WT+++ ++F + + AFE L + GLR + + ++K Sbjct: 170 KEADEMLFWTQDEYERFIEAIKDKPESFYAFELLYWCGLRMGELLALTKEKFDFKKHTLK 229 Query: 226 TQKTGTI----------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269 ++ T+ +P+ + + + + Sbjct: 230 IDESLQRIDGKNVITAPKTKKSIRTIVMPEFLTDEIKEYIDSFYKIKPKDLIFNFSKSYL 289 Query: 270 SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG--A 326 + K+ V + H +R ++ + G +A + G +++D Y + Sbjct: 290 HHEMDRGSKKSQVKRIRIHDLRHSHVSLLIELGFSATAIADRVGHESIDITYRYAHLFPS 349 Query: 327 DRIRLGIK 334 + + + Sbjct: 350 KQKEMALS 357 >gi|224025008|ref|ZP_03643374.1| hypothetical protein BACCOPRO_01742 [Bacteroides coprophilus DSM 18228] gi|224018244|gb|EEF76242.1| hypothetical protein BACCOPRO_01742 [Bacteroides coprophilus DSM 18228] Length = 389 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 54/375 (14%), Positives = 108/375 (28%), Gaps = 45/375 (12%) Query: 1 MTPSL---RLPPFVTKERTRHGKIIYY---FRKGHGRRIRLPY-----PHESTFIPAYMS 49 M + P + +++ +G + Y +R G + L + Sbjct: 4 MAKKTTTQKEPVKLREKKLANGNVSLYLDIYRNGKRHKEYLKLYLIDAKTYVEKEQNRQT 63 Query: 50 ALTGSTPKREYINSPRKKPTTLKW-------LISEYRKSAHWGSLAVNSRISF---ESYF 99 T K + + + + + YRK +S+ ++ S Sbjct: 64 LATAQAIKSKRMIEIQNGEYSFTHQFKEDTPFLEYYRKMVEERRKNPDSQGNWGNWRSCL 123 Query: 100 DQIIRKS-GDFDYRKITTKHIRSGVE---------SRKHTPS---------SAIQFLTS- 139 + + +R IT I E ++ P S ++ Sbjct: 124 RYLEIYCDENTLFRDITPDFIIGFKEFLENVEKDTHKRTGPRRERDTFQGLSQNSKVSYF 183 Query: 140 --MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197 +R A + ++INP +E K T E++++ S + AF Sbjct: 184 NKLRACINKAYEERIISINPLRGIEGFKAAEVKREYLTLEEVKKLASTPCRYPVLKRAFL 243 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI 257 F +GLR SD + +Q + + Sbjct: 244 FSCLTGLRKSDIQKLTWSEIQKFGNFTRIVFNQKKTGGLEYLDITPQAEKYLGEHKNPKE 303 Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKT 315 S+ + + AG+ K + H R A + D GA + + G + Sbjct: 304 PVFSGFTYGAWTSLELQRWSMNAGIQKNLTFHCGRHTFAVLMLDLGADIYTVSKLLGHRE 363 Query: 316 VDQAETYTKGADRIR 330 + + Y K D+ + Sbjct: 364 LSTTQIYAKVLDKNK 378 >gi|66046068|ref|YP_235909.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas syringae pv. syringae B728a] gi|63256775|gb|AAY37871.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas syringae pv. syringae B728a] Length = 344 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 52/329 (15%), Positives = 107/329 (32%), Gaps = 20/329 (6%) Query: 10 FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 + K + R G + YY+ G R +P + + L K ++ ++ Sbjct: 13 RLRKRKQRSGVVYYYYDIGGSPRKEIPLGSDYGMAIVEYAKL----EKSRTSSALVQQVL 68 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRK 127 T ++ +Y + ++ Q+++ D I +H+ + R Sbjct: 69 TFAYVAQKYMIEVVPTK-SPATQKDNARELKQLLKFFDDPPAPLEAIEPQHVVQYLRQRG 127 Query: 128 HT-PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 T P A + + ++ + + K E R ED + Sbjct: 128 KTAPVRANREKALLSAIWNF--ARSAGYTALANPCAGVKGHKEVGRDHYIEDEMFALVYG 185 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246 R A + +G R +D+ + + +++ ++ KT +E+ ++ Sbjct: 186 HAEQPLRDALDLFYLTGQRIADTLKMDERDIRDGRLWVQQGKTNAKRRIEITGELKVVID 245 Query: 247 MTPIGKETFFI-------NNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATI 296 KE I ++ Q M ++ F A AGV K +R + T Sbjct: 246 RIMTRKEGHRIRTSRLIVMDNGQPMTSSMLRGRFDAAREAAGVEKGEFQMRDLRAKAGTD 305 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKG 325 A++ + G TV E Y + Sbjct: 306 KAESSGDILQARDQLGHTTVVMTENYIRK 334 >gi|32472034|ref|NP_865028.1| integrase [Rhodopirellula baltica SH 1] gi|32397406|emb|CAD72712.1| integrase [Rhodopirellula baltica SH 1] Length = 348 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 38/290 (13%), Positives = 78/290 (26%), Gaps = 31/290 (10%) Query: 80 KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQ 135 + H A + + Q+ +G ++ +H+R R S Sbjct: 61 EDLHLTGKAKRTHDGYIRAVRQLSDFAGCSP-DQVNEQHVRQFFLHLKNDRNFAYGSLRV 119 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195 + ++ F ++++ I + T T E + + + + + Sbjct: 120 AFSGIKFFFTHTCKRDWEIIKMLK----LQNITTLPEVLTIEQVHE-LIGSATTQRMFVY 174 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLLAMTPIGKE 253 F + GLR +++ V + + + V LP ++LL Sbjct: 175 FWTVYSLGLRLNEALHLQVSDIDAERGWVHVHRGKGAKDRYVPLPTTTVRLLRNYWASHR 234 Query: 254 TFFINND----------------KQKMNATQFSIWFKAKATKA--GVNKSAHGVRKFSAT 295 M+ T K G S H +R AT Sbjct: 235 HPSFLFPADGRKHDLAKDGVSEATTPMSETAVQGAMKQITKNLRFGKKVSIHTLRHSYAT 294 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRL-GIKNSRRISSVVD 344 +AG + G ++ Y D + R+ + Sbjct: 295 HLLEAGVGLKVIQKYLGHSSLQTTMVYLHLTDTAEANAREEIERLFGSLP 344 >gi|134298655|ref|YP_001112151.1| phage integrase family protein [Desulfotomaculum reducens MI-1] gi|134051355|gb|ABO49326.1| phage integrase family protein [Desulfotomaculum reducens MI-1] Length = 293 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 42/278 (15%), Positives = 86/278 (30%), Gaps = 22/278 (7%) Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYF----DQIIRKSGDFD-YRKITTKHIRSG 122 T ++S++ + + G A ++ +++ I +G IT+ +R Sbjct: 2 KNTSGNILSDFLEDIYSGGTARSTVEAYQKDVVYFSKWYIDTTGKEPHLWDITSIDLREY 61 Query: 123 VESR----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 E P++ + + +M +WA + Y++ + K + + + + Sbjct: 62 QEYMLSVQGLMPATINRRMAAMEKYIRWAHGKGYISRLLAF-PKIIKEQKTPPKALGRVE 120 Query: 179 MQQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQ---KTGTII 233 + + R L GLR + + L K Sbjct: 121 QNRLLREAERHGKARDIALIRLMMSCGLRVGEVVSIRLSDLDIGERHGTVAVLGKGKKYR 180 Query: 234 TVELPDGFMKLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA 286 V +P K + + F N + + A K AG++ Sbjct: 181 KVPVPPEARKAIKEWLAERTQRYPDNDWLFPNRNVGNITARNVEQVIKNIGKFAGLDLHP 240 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R +AT GA + G ++ YTK Sbjct: 241 HVLRHTAATNMIRTGADIVTVAQILGHANLNTTAIYTK 278 >gi|322806106|emb|CBZ03673.1| tyrosine recombinase XerD [Clostridium botulinum H04402 065] Length = 263 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 34/238 (14%), Positives = 89/238 (37%), Gaps = 14/238 (5%) Query: 109 FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168 +T ++ SS ++ + S+R +K+ +++ V+ +P L E PK + Sbjct: 16 LSVDTVTIMAFVQYLQREGRATSSIVRNIVSVRNFYKYLIKKNMVSEDPTLGYEIPKIER 75 Query: 169 EGIRPWTKEDMQQFKSFWS---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225 + + E++ + + + +G + + E + +G++ ++ + + IK Sbjct: 76 TIPKILSVEEVDKLLNSPNSSKKGLRDKAMLELMYATGVKITELLNLNIYDINLKFNYIK 135 Query: 226 TQKTGTI-ITVELPDGFMKLLAMTPIGKETFFINNDKQ--------KMNATQFSIWFKAK 276 + + + + +K L + + N +M F K Sbjct: 136 CRGSKKRERIIPIGSYAIKCLKNYLEVRPAINVYNLDYLFLNLKGTQMTRQGFWKIIKFY 195 Query: 277 ATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 A +A ++K ++ +R A GA + G K + + Y+ + + ++ Sbjct: 196 AKEASIDKEIDSYTLRHSFAVHLLQNGADIKSVQELLGHKDLAATQIYSSISKKSKIA 253 >gi|126434558|ref|YP_001070249.1| site-specific tyrosine recombinase XerC [Mycobacterium sp. JLS] gi|166918889|sp|A3PXY1|XERC_MYCSJ RecName: Full=Tyrosine recombinase xerC gi|126234358|gb|ABN97758.1| tyrosine recombinase XerC subunit [Mycobacterium sp. JLS] Length = 300 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 43/304 (14%), Positives = 96/304 (31%), Gaps = 39/304 (12%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSG---VES 125 +Y + ++R ++ + + D +T +R+ + Sbjct: 6 DAFDQYLALE--RGRSDHTRRAYLGDLRSLFAFVDERTPGADLGSLTLPVLRAWLSAQAA 63 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 ++ + ++++ WAVR+ +A +P ++ PK + ++ + Sbjct: 64 AGTARTTLARRTSAVKTFTAWAVRRGLMASDPATRLQMPKARRTLPAVLRQDQARDALDA 123 Query: 186 WSEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE 236 + G + RL E L +G+R S+ C + + + ++ K TV Sbjct: 124 ANSGAQQGDPLALRDRLIVEMLYATGIRVSELCGLDIDDVDTSRRLLRVLGKGDKQRTVP 183 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQK-----------MNATQFSIWFKAKATKAG-VNK 284 + + L + ++ + AG + Sbjct: 184 FGEPAEQALRAWLTSGRPALATAESGPALLLGARGRRLDPRQARTVVHETVGAVAGAPDI 243 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 HG+R +AT + GA + G T+ + YT R+ +V D Sbjct: 244 GPHGLRHSAATHLLEGGADLRIVQELLGHSTLATTQLYTHVT---------VARLRAVHD 294 Query: 345 SDDP 348 P Sbjct: 295 QAHP 298 >gi|297618199|ref|YP_003703358.1| integrase family protein [Syntrophothermus lipocalidus DSM 12680] gi|297146036|gb|ADI02793.1| integrase family protein [Syntrophothermus lipocalidus DSM 12680] Length = 298 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 37/268 (13%), Positives = 83/268 (30%), Gaps = 16/268 (5%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF------DYRKITTKHIRSGVE 124 + ++ Y A S S+ + G + R + Sbjct: 15 WESVLERYEDYLKTTR-ARLSVESYMGDLRLFLEWLGGRGEDNPTAVTPLDASEYRRFLA 73 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + + P++ + + S+R + W V NP + + R T+ + Sbjct: 74 DKGYKPATINRKIQSLRAFYGWLQEAGIVPDNPFRRTKAVPAQELAPRWLTRPEQAALMR 133 Query: 185 FWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIF----SIKTQKTGTIITVELP 238 + R +L++GL+ + + + ++ K V L Sbjct: 134 AVRAKGRLRDEAMIALMLFAGLKVGELVALEREDVVVRERSGKVVVRQGKGNKRREVPLN 193 Query: 239 DGFMKLLAMTPIGKETFFINNDKQ--KMNATQFSIWFKAKATKAGV-NKSAHGVRKFSAT 295 +L T + ++ +++ Q + A A + + + H +R Sbjct: 194 ATARDILRRWLEENPTGPLWPSQKGGRLSKRQVQKIVEDCAYIAKLKDVTCHKLRHTFCK 253 Query: 296 ISADAGATAHELMATYGWKTVDQAETYT 323 DAG + ++ A G +D + YT Sbjct: 254 NLLDAGVSIDQVAAMAGHSRLDVTKRYT 281 >gi|295090947|emb|CBK77054.1| Site-specific recombinase XerD [Clostridium cf. saccharolyticum K10] Length = 327 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 36/295 (12%), Positives = 84/295 (28%), Gaps = 18/295 (6%) Query: 41 STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD 100 A AL G+T E ++ + L+ + + + S + + Sbjct: 23 KQLGNALEDALQGATVTYEGAHNEGNQ----ADLVEAFIIAKRIEGCSEKSLKYYRKTIE 78 Query: 101 QIIRKSGDFDYRKITTKHIR----SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN 156 ++ G ++ITT+ +R + R + + + F W ++++ + Sbjct: 79 ALLAGIGKT-AQQITTEDLRTYLTNYQIQRGSSKVTIDNIRRILSSFFSWLEDEDFILKS 137 Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216 P + + K +T E ++ + + ++ + L SG+R + Sbjct: 138 PVRRIHKVKTAKVVKDTYTDEALELMRDNCT-NARDLAIIDLLASSGMRVGEMVMLNRDD 196 Query: 217 LQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT------QF 269 + N V L + Sbjct: 197 IDFNERECVVIGKGNKERLVYFDARTKIHLQNYLNERTDANPALFVSLKAPNERLMIGGV 256 Query: 270 SIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + + + H R+ AT + D G ++ G + +D Y Sbjct: 257 ETRLREMGKRLNLQKVHPHKFRRTLATSAIDKGMPIEQVQQLLGHQKIDTTMHYA 311 >gi|239947404|ref|ZP_04699157.1| integrase [Rickettsia endosymbiont of Ixodes scapularis] gi|239921680|gb|EER21704.1| integrase [Rickettsia endosymbiont of Ixodes scapularis] Length = 386 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 45/333 (13%), Positives = 101/333 (30%), Gaps = 19/333 (5%) Query: 28 GHGRRIRLPYPHESTFIPAYMSALTGSTPKRE-----YINSPRKKPTTLKWLISEYRKSA 82 RI++ + I A + A + + K T K Y Sbjct: 59 KKYHRIKIGVFPYLSIIDARLKASELKGKIAQGYNPIEEKARLSKEPTFKEFYDRYLDEY 118 Query: 83 HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS-AIQFLTSMR 141 + + + D+ + + I I+ T A +FL +R Sbjct: 119 SKINNKR--WKDYAASVDRYAKHLYNRKISTIQKADIQELFNKLTKTGKYGANRFLEILR 176 Query: 142 VLFKWAVRQEYVAINPCLSV-ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200 +F A+ E + +NP + + + ++ + + + + F L Sbjct: 177 PVFNKAIEWELIKVNPAIGITKHQEQSRDRYLTREEIPQFFAAIAEEKNEVMKDFFLIAL 236 Query: 201 YSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN 258 Y+ +R + + + + K G ++ L D +++L + ++ Sbjct: 237 YTSVRKDNLLTMKWEQVSFTDKQLYLPETKNGKPHSLPLLDQALEILKARKENSTSSWVF 296 Query: 259 NDKQKMNA--TQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKT 315 + + + + KAG+ H +R+ + A GA + + Sbjct: 297 PSETSGSGHLQEPKKAWSRICEKAGIKNLRIHDLRRTVPSWMAMTGANQYVIGQLLNHMD 356 Query: 316 VDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 YT+ A+ + +DS P Sbjct: 357 PRSTAVYTRLAN-----DTAREYMQRAIDSMIP 384 >gi|94968162|ref|YP_590210.1| phage integrase [Candidatus Koribacter versatilis Ellin345] gi|94550212|gb|ABF40136.1| phage integrase [Candidatus Koribacter versatilis Ellin345] Length = 454 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 50/332 (15%), Positives = 97/332 (29%), Gaps = 24/332 (7%) Query: 9 PFVTKERTRHGKIIYYFR-----KGHG--RRIRLPYPHESTFIPAYMSALTGSTPKREYI 61 V K T+ FR G G RR R +P+ SA+ Sbjct: 88 GHVYKRGTKLKVWYGRFREDLLTPGGGIVRRTRNIRLGTIAELPSRASAVIRLQENIASH 147 Query: 62 NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIR 120 T+ L + ++A ++ N+ ++ I+ G + IT + ++ Sbjct: 148 KPKTA--MTVSELHRRW-ENAELPTIKRNTAGYYQKILRCHILPTFGQREIGSITREDVQ 204 Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + S+ K++ ++ S+ + WAV ++ NPC V P + I+ Sbjct: 205 TFLASQAGKYSRNTLRGMRVSLGRILTWAVNCAWLEKNPCSKVPLPHVEKGEIQRSILMT 264 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG------TI 232 Q R L +GLR ++ +I + Sbjct: 265 EQVTAIADKLEEPYRTLVLLLAVTGLRIGEAIGIKWSDFDGDILHVSRTIYDGKADSTKT 324 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA----TQFSIWFKAKATKAGVNKS-AH 287 + L + + + + A G+ + H Sbjct: 325 ASSNRKLPIPAALISRMRMLGDGEFIFHSRAGSPVNPGNALKRYLRPAAKALGIRLTGWH 384 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQA 319 R AT +G++ + G V Sbjct: 385 DFRHTQATQLLRSGSSPKVVSGILGHSDVGIT 416 >gi|304383186|ref|ZP_07365659.1| probable integrase [Prevotella marshii DSM 16973] gi|304335657|gb|EFM01914.1| probable integrase [Prevotella marshii DSM 16973] Length = 407 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 49/362 (13%), Positives = 96/362 (26%), Gaps = 28/362 (7%) Query: 1 MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60 M ++ + R + +Y K R + + Sbjct: 54 MIGKPKV--HIKHNRRKENLQLYLIAKPRTPAERQQNKETLELAAKIRAEREQQFKESML 111 Query: 61 -INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--------FDY 111 + + Y S L + ++ + Sbjct: 112 GYRLKKDRNINFLDYYQAYIDSYTKKDL-----RMIKIALNRFKDFLKEYYPLYEFSIKP 166 Query: 112 RKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169 IT + + VE + A + + ++A+ E + +PC V + Sbjct: 167 DLITKEMMERFVEYLQSRSVGEGAKSIYQRFKKVVRYAIDHEVMLKDPCKGVVCKVGEQI 226 Query: 170 GIRP---WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226 + + + +E R AF LY GLR D +++ +K Sbjct: 227 LRKDVLSMDEIQSLIQCHYDNENPNVRRAFILCLYCGLRFCDVKDLTYKNIDYTNHLLKF 286 Query: 227 QKTGTIITVELPDGFMKL---LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 ++ T + L L + K +AG+N Sbjct: 287 EQNKTKGHSANSGVVIPLNDGLLSLIGEAPEDLDTSIFNLPTYESCCKSVKRWVKRAGIN 346 Query: 284 K--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 K S H R A + GA + + G + E YT+ D +L + + Sbjct: 347 KHISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVD--KLKSEAINSLPE 404 Query: 342 VV 343 + Sbjct: 405 LK 406 >gi|253700090|ref|YP_003021279.1| integrase family protein [Geobacter sp. M21] gi|251774940|gb|ACT17521.1| integrase family protein [Geobacter sp. M21] Length = 334 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 46/320 (14%), Positives = 96/320 (30%), Gaps = 16/320 (5%) Query: 16 TRHGKIIYY--FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN-SPRKKPTTLK 72 R GK ++Y F R R + + ++ R L Sbjct: 5 KRGGKGVFYMNFTVDGVRVSRSTGKFTKKEAKLFEAVEKKRMMVDGALSPRERAARMLLS 64 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHT 129 I + W + + ++++ GD KI + I+ +E Sbjct: 65 VAIQKVYDE-RWKDNKDGDKS--QRIAERVMYLIGDVPISKIDEETIKLLVRLLEGSGVK 121 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 ++ ++L +++ L ++ + S R + + ++ Sbjct: 122 GATVNRYLATVKTLLRYHRQPWEHIQLKKESKGRIRVISREEEAMVVNLLRDTDHGSRRL 181 Query: 190 SQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKT--GTIITVELPDGFMKLL 245 P +A + +G R S+ G + + + I ++ + + +L Sbjct: 182 YFPEVADLVEVLADTGCRLSEVLNLGYEDINFDTNLITVWINKGDKPRSIPMTNRVGGIL 241 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATA 304 +G D K+ W + K AG H +R +AT D G Sbjct: 242 QARQVGNPLKPFTIDIDKV--ETAWKWVRKKMGLAGDPEFVPHALRHTTATRLIDGGIDL 299 Query: 305 HELMATYGWKTVDQAETYTK 324 + + G T+ E Y Sbjct: 300 YTVKEWLGHSTIQVTERYAH 319 >gi|281424449|ref|ZP_06255362.1| putative integrase [Prevotella oris F0302] gi|281401435|gb|EFB32266.1| putative integrase [Prevotella oris F0302] Length = 407 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 49/362 (13%), Positives = 98/362 (27%), Gaps = 28/362 (7%) Query: 1 MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60 M ++ + R + +Y K R + + Sbjct: 54 MAGKPKV--HIKHNRRKENLQLYLIAKPRTPVERQQNKETLELATKIRAEREQQFKESML 111 Query: 61 -INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-FDYRK--ITT 116 + + Y S L + ++ + + + I Sbjct: 112 GYRLKKDRNVNFLDYYQAYIDSYTKKDL-----RMIKIALNRFKDFLKEQYPLYEFSIKP 166 Query: 117 KHIRSGVESRKHT-------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169 I + R A + + ++A+ E + +PC V + Sbjct: 167 DLIIKDMMERFVEYLQSRSVGEGAKSIYQRFKKVVRYAIDHEVMLKDPCKGVVCKVDEQI 226 Query: 170 GIRP---WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226 + + + +E R AF LY GLR D +++ +K Sbjct: 227 LRKDVLSMDEIQSLIQCHYDNENPNVRRAFILCLYCGLRFCDVKDLTYKNIDYTNHLLKF 286 Query: 227 QKTGTIITVELPDGFMKL---LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 ++ T + L L ++ + S K +AG+N Sbjct: 287 EQNKTKGHSANSGVIIPLNDGLLSLIGEAPEDLNSSIFNLPSYESCSKSVKRWVKRAGIN 346 Query: 284 K--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 K S H R A + GA + + G + E YT+ D +L + + Sbjct: 347 KHISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVD--KLKSEAINSLPE 404 Query: 342 VV 343 + Sbjct: 405 LK 406 >gi|289426394|ref|ZP_06428137.1| phage integrase, N-terminal SAM domain protein [Propionibacterium acnes SK187] gi|289153122|gb|EFD01840.1| phage integrase, N-terminal SAM domain protein [Propionibacterium acnes SK187] gi|313773500|gb|EFS39466.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL074PA1] gi|313807979|gb|EFS46460.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL087PA2] gi|313811552|gb|EFS49266.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL083PA1] gi|313819548|gb|EFS57262.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL046PA2] gi|313822129|gb|EFS59843.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL036PA1] gi|313823637|gb|EFS61351.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL036PA2] gi|313825961|gb|EFS63675.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL063PA1] gi|313831292|gb|EFS69006.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL007PA1] gi|313834903|gb|EFS72617.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL056PA1] gi|314924714|gb|EFS88545.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL036PA3] gi|314962115|gb|EFT06216.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL002PA2] gi|314974168|gb|EFT18264.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL053PA1] gi|314976542|gb|EFT20637.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL045PA1] gi|314979003|gb|EFT23097.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL072PA2] gi|314984361|gb|EFT28453.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL005PA1] gi|314986551|gb|EFT30643.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL005PA2] gi|314990910|gb|EFT35001.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL005PA3] gi|315081228|gb|EFT53204.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL078PA1] gi|315083594|gb|EFT55570.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL027PA2] gi|315087111|gb|EFT59087.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL002PA3] gi|315095307|gb|EFT67283.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL038PA1] gi|327328430|gb|EGE70192.1| putative tyrosine recombinase XerC [Propionibacterium acnes HL096PA2] gi|327329704|gb|EGE71460.1| putative tyrosine recombinase XerC [Propionibacterium acnes HL096PA3] gi|327444217|gb|EGE90871.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL043PA2] gi|327444904|gb|EGE91558.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL043PA1] gi|327446389|gb|EGE93043.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL013PA2] gi|328752379|gb|EGF65995.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL020PA1] gi|328760018|gb|EGF73600.1| putative tyrosine recombinase XerC [Propionibacterium acnes HL099PA1] Length = 315 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 40/291 (13%), Positives = 95/291 (32%), Gaps = 28/291 (9%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGVESRKHTPS 131 + ++ + N+ + + ++ GD +I T +R+ + + + Sbjct: 22 VEDFCGHLSALRRSPNTIRGYRADLIDLMGHAHSHGDDTLGRIGTSQVRAWLADTRVAGA 81 Query: 132 SAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI---------RPWTKEDM 179 SA + ++ RV F+WA + ++ +P ++ K + Sbjct: 82 SAATMQRRWSAARVFFRWAANEGLISADPTTALNSAKVPKRLPATLGVDQARHILDEAVA 141 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELP 238 Q G++ E L GLR + C + + T K TV + Sbjct: 142 QARHDESPHGARDAAILEVLYGGGLRVGELCGLDLGDVDRSRRTVKVTGKGDKERTVPMG 201 Query: 239 DGFMKLLAMTPIGKETFFINN---------DKQKMNATQFSIWFKAKATK--AGVNKSAH 287 ++ + +E + + ++++ + H Sbjct: 202 APALRAIDTWLPRREEWVGPHSGQALFLGARGRRIDQRVVRRVVHTHLRAEPDSPDLGPH 261 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337 G+R AT + GA + G +++ + YT + +R+R + + Sbjct: 262 GLRHAMATHLLEGGADLRTVQDILGHESLATTQIYTHVSTERLRTAFRQAH 312 >gi|325579064|ref|ZP_08149020.1| xylulose-5-phosphate/fructose-6-phosphate phosphoketolase [Haemophilus parainfluenzae ATCC 33392] gi|325159299|gb|EGC71433.1| xylulose-5-phosphate/fructose-6-phosphate phosphoketolase [Haemophilus parainfluenzae ATCC 33392] Length = 399 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 51/345 (14%), Positives = 103/345 (29%), Gaps = 21/345 (6%) Query: 11 VTKERTRHGKIIYYFRKGHGRRIRLPYPHE-STFIPAYMSALTGSTPKREYINSPRKKPT 69 + + ++G F GRRIR L + K E +N ++ Sbjct: 38 IRSGKNKYGVWQIDFTTPSGRRIRSSSGRTDKRLAQELHDKLKAESYKVERLN--KQPER 95 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR-----SGVE 124 T++ + + + A + + + G + +T+ I Sbjct: 96 TVEDALICFLEDAEHQK----DLETKIHHAQYWRDRIGHKNLSSLTSDDIYNNLPTHKRT 151 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + +PS+ ++ TS+ A + +V + + + W +D Sbjct: 152 GERLSPSTQNRYRTSIMRALNLAKQAGWVD---AIPYLAKNNEPKKRVRWITQDEANRFL 208 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMK 243 R F L +G R S+ + I T Sbjct: 209 DSLNLEWMREVCSFALLTGGRMSEILTLTWDKIDFPRSIAIVTSDVAKSGHARSLPLPRN 268 Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIW----FKAKATKAGV-NKSAHGVRKFSATISA 298 + + + S FK +AG+ + S H +R A+ Sbjct: 269 AVNFLRQKETRRISQYVFHRGKGKMISDIDREDFKRALQRAGISDFSFHDLRHTWASWHI 328 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343 +G L GW+T++ + Y +R L N +++S + Sbjct: 329 QSGTPLMVLKELGGWETIEMVQKYAHLNERHLLQYANHVKVTSKL 373 >gi|149923694|ref|ZP_01912089.1| Phage integrase [Plesiocystis pacifica SIR-1] gi|149815440|gb|EDM74979.1| Phage integrase [Plesiocystis pacifica SIR-1] Length = 316 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 42/299 (14%), Positives = 83/299 (27%), Gaps = 26/299 (8%) Query: 70 TLKWLISEYRK-SAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK 127 TL Y ++ S ES+ + +I K G+ +I + ++ S Sbjct: 3 TLAEFAPRYMDGYVRANRQKPSTIESKESHLNAHLIPKLGEMRLDQIDNETVQRLKGSMS 62 Query: 128 -HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + + LT++ + K AV + + P K E E + + Sbjct: 63 SMSNKTVNNVLTTLNTMLKCAVEWKILEEMPARIRLLKVTKREAAFFDFDEYERLVAAAG 122 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-----------QKTGTIITV 235 +L +G+R + + + K I V Sbjct: 123 KVEPWVQLMVLLGGDAGMRPGEVRALHWTSVDFQRQRLTIERNEHKGSFLLPKHDKIRRV 182 Query: 236 ELPDGFMKLLAMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGV 289 + D + L+ + M+ W +A + H + Sbjct: 183 PMTDAVAQALSAHRHLRGPLVFYRDGGYAAGKVMSPRYQRYWLDKALRRANLPDLGPHTL 242 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 R + A GA A +M G + + + Y L +++ P Sbjct: 243 RHTFCSHLAMRGAPARAIMELAGHRDLLTTQGYMH------LSPAALESSIGLLNRARP 295 >gi|58039205|ref|YP_191169.1| site-specific tyrosine recombinase XerC [Gluconobacter oxydans 621H] gi|58001619|gb|AAW60513.1| Site-specific recombinase, integrase/recombinase RipX, XerC [Gluconobacter oxydans 621H] Length = 321 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 41/296 (13%), Positives = 85/296 (28%), Gaps = 42/296 (14%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-------------GDFDYRKITTKHIRS 121 +E+ + + ++ + G + Sbjct: 14 WTEWLTHE--RRASPRTVEAYRHDVLLALTFFQQHLGAEVTLADLGKLSLADLRAWLAHE 71 Query: 122 GVESRKHT---------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 S + T S + ++++R F++ + ++ + P+ K R Sbjct: 72 TARSEQPTRRPTSADSRARSRARHVSALRSFFRYLGLRHDLSNPAPSLLATPRTKKRLPR 131 Query: 173 PWTKEDMQQFKSFWSEG-------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFS 223 P ++ + S+ + R F L +GLR ++ ++ L N Sbjct: 132 PLGEDAARAAAEGISDDAETSLAALRDRALFTLLYGTGLRIGEALSLDIRDLTNAGQNML 191 Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETF------FINNDKQKMNATQFSIWFKAKA 277 K G V L M+ L + F ++N + Sbjct: 192 RVVGKGGKERLVPLLPAVMEALESWKAAHPSPTPDAPLFCGVRGGRLNPGVAQRAMRTWR 251 Query: 278 TKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 G+ + H +R AT + GA + G ++ + YT AD L Sbjct: 252 KGEGLPDSATPHALRHSFATHLMEGGADLRTIQELMGHASLSTTQAYT-LADEKHL 306 >gi|315089284|gb|EFT61260.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL072PA1] Length = 315 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 40/291 (13%), Positives = 95/291 (32%), Gaps = 28/291 (9%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGVESRKHTPS 131 + ++ + N+ + + ++ GD +I T +R+ + + + Sbjct: 22 VEDFCGHLSALRRSPNTIRGYRADLIDLMGHAHSHGDDTLGRIGTSQVRAWLADTRVAGA 81 Query: 132 SAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI---------RPWTKEDM 179 SA + ++ RV F+WA + ++ +P ++ K + Sbjct: 82 SAATMQRRWSAARVFFRWAANEGLISADPTTALNSAKVPKRLPATLGVDQARHILDEAVA 141 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELP 238 Q G++ E L GLR + C + + T K TV + Sbjct: 142 QARHDESPHGARDAAILEVLYGGGLRVGELCGLDLGDVDRSRRTVKVTGKGDKERTVPMG 201 Query: 239 DGFMKLLAMTPIGKETFFINN---------DKQKMNATQFSIWFKAKATK--AGVNKSAH 287 ++ + +E + + ++++ + H Sbjct: 202 APALRAIDTWLPRREEWVGPHSGQALFLGARGRRIDQRVVRRVVHTHLRAEPDSPDLGPH 261 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337 G+R AT + GA + G +++ + YT + +R+R + + Sbjct: 262 GLRHAMATHLLEGGADLRTVQDILGHESLATTQIYTHVSTERLRTAFRQAH 312 >gi|304415198|ref|ZP_07395910.1| putative phage integrase [Candidatus Regiella insecticola LSR1] gi|304282945|gb|EFL91396.1| putative phage integrase [Candidatus Regiella insecticola LSR1] Length = 354 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 39/343 (11%), Positives = 100/343 (29%), Gaps = 31/343 (9%) Query: 10 FVTKERTRHGKIIYY----FRKGHGRRIRLPYPHES-TFIPAYMSALTGSTPKREYINSP 64 + K G + Y ++G R + + + NS Sbjct: 8 NIVKRPRADGTVRYRCTAGVKEGGKHLHRETRTFGKLAQAKTWGTKRAAELEENGVPNSS 67 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGV 123 + T+ L+ Y + G A ++ D ++ D ++T H+ Sbjct: 68 DIEKITVGELLKRYINDPNLGGKAGRTK---RYVLDMLLDCDIADTLLADLSTSHVIEYC 124 Query: 124 ESR---KHTPSSAIQFLTSMRVLFK-----WAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 R PS+ ++ + + + + + + + Sbjct: 125 RHRNGAGAGPSTVNHDVSYLSSVLASAKPVYGIDYIANPATDARPLLLQMGLIGKSKRRS 184 Query: 176 KEDMQQFKSFWSEGSQPR-----------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 + + G + R F + S +R + C+ + + ++ Sbjct: 185 RRPVSDELDRLLVGLEARSGHVAAKIPFVDILNFSILSCMRVGEVCKIRWEDIDEKQKAV 244 Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND-KQKMNATQFSIWFKAKATKAGV- 282 + + LL + ++ N+ + F+ G+ Sbjct: 245 LVRDRKDPRKKSGNHMLVPLLGDAWTIVQHQPKTSELIFPYNSRSVTAGFQRVRNALGIK 304 Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 + H +R+ A+ +AG + E+ G ++++ + YT+ Sbjct: 305 DLRYHDLRREGASRLFEAGFSIEEVAQITGHRSLNVLWQVYTE 347 >gi|213692647|ref|YP_002323233.1| phage integrase family protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213524108|gb|ACJ52855.1| phage integrase family protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320458797|dbj|BAJ69418.1| phage integrase [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 396 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 43/357 (12%), Positives = 96/357 (26%), Gaps = 50/357 (14%) Query: 10 FVTKERTRHGKIIYY--FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67 VT+ +T G+ Y +RK G + + + + P+ Sbjct: 3 NVTRYKTSKGETRYRVRYRKPDGTQTDKRGFKRKIDAENWAAKRVTTAKAEGTYIDPQAG 62 Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR 126 T+ L + + + + E + + + G+ +T + + V Sbjct: 63 KATVGELGPAWLAKKKLST-KPSHYRTLEGAWEKWVKPEWGNTPVSAVTRETTQQWVTGI 121 Query: 127 KH---------------TPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKRKT 168 P SA L + + + A + + NP +E P+++ Sbjct: 122 SQGKTVKDERGNEIVLAKPRSASVVLRAHGVLAGILDDAKKDRRIPDNPARGIELPRKRR 181 Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI---- 224 + T E + + + + + G+R + V + I Sbjct: 182 KKHVYLTAEQLDRLAGSVTPWRRDLVLVLG--LCGMRWGELIPLRVMDVDLEKHRIYIGV 239 Query: 225 -------KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK- 276 T + +L D + + + Sbjct: 240 SAPMVGGVIIPDDTKTYKARAIMYPVVLDPIMRRLCADRKPGDLLFEQPGREGMMIREWG 299 Query: 277 ------------ATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 +AG+ + H +R +A++ AGA + G K+ Sbjct: 300 NASRDDGWLSVGLRRAGIPGHLTIHDLRHTAASLMVRAGANVKAVQRQLGHKSAAMT 356 >gi|303240629|ref|ZP_07327144.1| integrase family protein [Acetivibrio cellulolyticus CD2] gi|302591866|gb|EFL61599.1| integrase family protein [Acetivibrio cellulolyticus CD2] Length = 279 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 36/268 (13%), Positives = 94/268 (35%), Gaps = 18/268 (6%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRK 127 L + + + ++I++ + + + + + I++ + RK Sbjct: 2 SKLREQMKYDMDLKGFSEKTKIAYLKHVELFAKYF-KKSPELLGEEEIKAYLHHQLIERK 60 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + S Q ++++ L++ +++E+ + R KR+ + + ++E++++ + + Sbjct: 61 MSRSYNTQAYSALKFLYETTLKREW----KSYKIPRCKREKKLPKVLSREEVKRIFNVTT 116 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELPDGFMKLL 245 + R SGLR S+ V + ++ K L ++LL Sbjct: 117 -NPKHRAILMTTYSSGLRVSEVVNLKVNDIDGKRLQLFVQGGKGQKDRYTVLSRKNLELL 175 Query: 246 AMTPIGKETFFI----NNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISAD 299 + + + F+ KAG+ + S H +R AT + Sbjct: 176 RDYWKLYHPKTWLFPGQDINEPLCVRTVQKVFENSVRKAGITKDVSVHTLRHSFATHLLE 235 Query: 300 AGATAHELMATYGWKTVDQAETYTKGAD 327 +G + G ++ Y + Sbjct: 236 SGVDTFYIQKLLGHSSLKTTSIYIHVGN 263 >gi|188994781|ref|YP_001929033.1| tyrosine type site-specific recombinase [Porphyromonas gingivalis ATCC 33277] gi|188594461|dbj|BAG33436.1| tyrosine type site-specific recombinase [Porphyromonas gingivalis ATCC 33277] Length = 420 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 38/317 (11%), Positives = 91/317 (28%), Gaps = 18/317 (5%) Query: 39 HESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNS---RISF 95 + + + + ++ L+ Y + A + +S +++ Sbjct: 94 YADEVRKLRQREYDNADLYSDADTAQAEQKERLQQNFISYFREAMYKRHKNSSTSILVNW 153 Query: 96 ESYFDQIIRKSG-DFDYRKITTKHIRSGVESRKHTPS-----------SAIQFLTSMRVL 143 + D + +G + + KI P +A + + + Sbjct: 154 KRAMDFLKMYAGENLPFFKIDNAFAEEYKRFLLTAPRGGNKCGTISHNTASTYFSIFKAA 213 Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203 K A Y+ ++ ++ + + T E++ S + + A F +G Sbjct: 214 LKQAFIDGYLTVDISAKIKGIQEQESRREYLTVEELNTLASTPCDREVMKRAALFSALTG 273 Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK 263 LR D + + + + + T + + + Sbjct: 274 LRHCDIQKLKWKEINMDGEQPRLHFTQKKTKGVEYMPISEQALQLCGERGLPEQLVFEDL 333 Query: 264 MNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321 + + S K AG+ KS H R AT+ + + + G V + Sbjct: 334 PDPSWISKPLKRWIEAAGIKKSISFHCFRHSYATLQFASSTDIYTVSKMLGHTNVKTTQI 393 Query: 322 YTKGADRIR-LGIKNSR 337 Y K D + + + Sbjct: 394 YAKVVDEKKNKAAQAIK 410 >gi|50843000|ref|YP_056227.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes KPA171202] gi|50840602|gb|AAT83269.1| integrase/recombinase [Propionibacterium acnes KPA171202] gi|313763561|gb|EFS34925.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL013PA1] gi|313793954|gb|EFS41978.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL110PA1] gi|313801341|gb|EFS42592.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL110PA2] gi|313816741|gb|EFS54455.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL059PA1] gi|313829428|gb|EFS67142.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL063PA2] gi|313839938|gb|EFS77652.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL086PA1] gi|314914715|gb|EFS78546.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL005PA4] gi|314919323|gb|EFS83154.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL050PA1] gi|314920767|gb|EFS84598.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL050PA3] gi|314930647|gb|EFS94478.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL067PA1] gi|314954397|gb|EFS98803.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL027PA1] gi|314957518|gb|EFT01621.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL002PA1] gi|314963694|gb|EFT07794.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL082PA1] gi|314968478|gb|EFT12576.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL037PA1] gi|315079544|gb|EFT51537.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL053PA2] gi|315099188|gb|EFT71164.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL059PA2] gi|315100329|gb|EFT72305.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL046PA1] gi|315106859|gb|EFT78835.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL030PA1] gi|315108987|gb|EFT80963.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL030PA2] gi|327452023|gb|EGE98677.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL092PA1] gi|327454940|gb|EGF01595.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL087PA3] gi|327457774|gb|EGF04429.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL083PA2] gi|328755227|gb|EGF68843.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL087PA1] gi|328758294|gb|EGF71910.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL025PA2] Length = 315 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 41/291 (14%), Positives = 95/291 (32%), Gaps = 28/291 (9%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGVESRKHTPS 131 + ++ + N+ + + ++ GD +I T +R+ + + + Sbjct: 22 VEDFCGHLSALRRSPNTIRGYRADLIDLMGHAHSHGDDTLGRIGTSQVRAWLADTRVAGA 81 Query: 132 SAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI---------RPWTKEDM 179 SA + ++ RV F+WA + ++ +P ++ K + Sbjct: 82 SAATMQRRWSAARVFFRWAANEGLISADPTTALNSAKVPKRLPATLGVDQARHILDEAVA 141 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELP 238 Q G++ E L GLR + C + + T K TV + Sbjct: 142 QARHDESPHGARDAAILEVLYGGGLRVGELCGLDLGDVDRSRRTVKVTGKGDKERTVPMG 201 Query: 239 DGFMKLLAMTPIGKETFFINNDKQK----MNATQFSIWFKAKATKAGV-------NKSAH 287 ++ + +E + + Q + + + + H Sbjct: 202 APALRAIDTWLPRREEWVGPHSGQALFLGARGRRIDQRVVRRVVHTDLRAEPDSPDLGPH 261 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337 G+R AT + GA + G +++ + YT + +R+R + + Sbjct: 262 GLRHAMATHLLEGGADLRTVQDILGHESLATTQIYTHVSTERLRTAFRQAH 312 >gi|313813390|gb|EFS51104.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL025PA1] gi|327334220|gb|EGE75934.1| putative tyrosine recombinase XerC [Propionibacterium acnes HL097PA1] Length = 315 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 40/291 (13%), Positives = 95/291 (32%), Gaps = 28/291 (9%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGVESRKHTPS 131 + ++ + N+ + + ++ GD +I T +R+ + + + Sbjct: 22 VEDFCGHLSALRRSPNTIRGYRADLIDLMGHAHSHGDDALGRIGTSQVRAWLADTRVAGA 81 Query: 132 SAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI---------RPWTKEDM 179 SA + ++ RV F+WA + ++ +P ++ K + Sbjct: 82 SAATMQRRWSAARVFFRWAANEGLISADPTTALNSAKVPKRLPATLGVDQARHILDEAVA 141 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELP 238 Q G++ E L GLR + C + + T K TV + Sbjct: 142 QARHDESPHGARDAAILEVLYGGGLRVGELCGLDLGDVDRSRRTVKVTGKGDKERTVPMG 201 Query: 239 DGFMKLLAMTPIGKETFFINN---------DKQKMNATQFSIWFKAKATK--AGVNKSAH 287 ++ + +E + + ++++ + H Sbjct: 202 APALRAIDTWLPRREEWVGPHSGQALFLGARGRRIDQRVVRRVVHTHLRAEPDSPDLGPH 261 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337 G+R AT + GA + G +++ + YT + +R+R + + Sbjct: 262 GLRHAMATHLLEGGADLRTVQDILGHESLATTQIYTHVSTERLRTAFRQAH 312 >gi|269302896|gb|ACZ32996.1| putative tyrosine recombinase XerC [Chlamydophila pneumoniae LPCoLN] Length = 312 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 40/294 (13%), Positives = 98/294 (33%), Gaps = 42/294 (14%) Query: 77 EYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDF------------------DYRKIT 115 +Y K + ++ ++ + + G+ + T Sbjct: 10 DYLKMVKSA--SPHTLRNYCLDLNGLKIFLEERGNLAPSSPLQLATEKRKVSELPFSLFT 67 Query: 116 TKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 +H+R + + + L+S++ + V Q+ + NP ++ P+ E Sbjct: 68 KEHVRMYIAKLIENGKAKRTIKRCLSSIKSFAHYCVVQKILLENPAETIHGPRLPKELPS 127 Query: 173 PWTKED----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228 P T M G + R E SGLR S+ Q + I+ + Sbjct: 128 PMTYAQVEVLMATPDISKYHGLRDRCLMELFYSSGLRISEIVAVNKQDFDLSTHLIRIRG 187 Query: 229 T-GTIITVELPDGFMKLLAMTPIGKET---------FFINNDKQKMNATQFSIWFKAKAT 278 + + ++ + + F+N ++++ F+ Sbjct: 188 KGKKERIIPVTSNAIQWIQTYLNHPDRKRLEKDPQAIFLNRFGRRISTRSIDRSFQEYLR 247 Query: 279 KAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 ++G+ + + H +R AT ++G + A G +++ YT+ + +++ Sbjct: 248 RSGLSGHITPHTIRHTIATHWLESGMDLKTIQALLGHSSLETTTVYTQVSVKLK 301 >gi|115380783|ref|ZP_01467658.1| integrase [Stigmatella aurantiaca DW4/3-1] gi|115362213|gb|EAU61573.1| integrase [Stigmatella aurantiaca DW4/3-1] Length = 253 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 39/226 (17%), Positives = 81/226 (35%), Gaps = 17/226 (7%) Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 +R + S + L ++R ++ + +++ +P ++ P+ + T E+++Q + Sbjct: 5 ARGLSKRSQARHLAAVRGFHRFLIAEKHAEKDPTEDLDTPRSARKLPSFLTLEEVEQLLA 64 Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPD 239 G + + E L +GLR S+ C G+ +Q + + V + Sbjct: 65 APDERHPTGMRDKAMLELLYATGLRVSELCSLGINDVQLGAGYLVAKGKGSKERVVPVGS 124 Query: 240 GFMKLLAMTPIGKETFFINNDKQK----------MNATQFSIWFKAKATKAGVNK--SAH 287 ++ + G + + + F K A KAG+ K S H Sbjct: 125 VAVEKVQAYLGGPRQHLLGKRQSRSLFITPRGGAFTRQGFWKLLKRYALKAGIRKPISPH 184 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 +R AT + GA + A G + + YT + Sbjct: 185 KLRHSFATHLVERGADLRAVQAMLGHADLATTQIYTHVNSARLRAV 230 >gi|94495775|ref|ZP_01302355.1| integrase [Sphingomonas sp. SKA58] gi|94425163|gb|EAT10184.1| integrase [Sphingomonas sp. SKA58] Length = 310 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 42/295 (14%), Positives = 90/295 (30%), Gaps = 28/295 (9%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 LI + + + N+ +++ + G + Sbjct: 6 AALIDRFLEMMAAERGASRNTLLAYRTDLTGAGGLLGGLAGASKEGLGTLATH-WASLAG 64 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK------- 183 SS + +++R + + + A NP +++ RP + + + ++ + Sbjct: 65 SSVARKASALRAFYGFLEEEGLRADNPSVALPRPVTRRPLPKILSTTEVDRLFALIAERL 124 Query: 184 ---SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 + E L SGLR ++ + L + + + G + Sbjct: 125 EVAHPAPLDLRLSALIELLYGSGLRATELVSLPRRALAADRPFLILKGKGARERLVPISD 184 Query: 241 FMKLLAMTPIGKET----FFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFS 293 + + + + K ++ + KA A AG+ S H +R Sbjct: 185 RARAAVSAWLVHVPGDSAWLFPSGKSHLSRIRLYQLVKALAGAAGIAPERVSPHVLRHAF 244 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 AT + GA L A G + + YT R R+ +V+ P Sbjct: 245 ATHLLEGGADLRALQAMLGHADIGTTQIYTHVDSR---------RLVELVNQRHP 290 >gi|15617948|ref|NP_224232.1| site-specific tyrosine recombinase XerC [Chlamydophila pneumoniae CWL029] gi|15835561|ref|NP_300085.1| site-specific tyrosine recombinase XerC [Chlamydophila pneumoniae J138] gi|16753021|ref|NP_445294.1| site-specific tyrosine recombinase XerC [Chlamydophila pneumoniae AR39] gi|33241363|ref|NP_876304.1| site-specific tyrosine recombinase XerC [Chlamydophila pneumoniae TW-183] gi|34223089|sp|Q9Z9F7|XERC_CHLPN RecName: Full=Tyrosine recombinase xerC gi|4376276|gb|AAD18177.1| Integrase/recombinase [Chlamydophila pneumoniae CWL029] gi|8163493|gb|AAF73701.1| integrase/recombinase, phage integrase family [Chlamydophila pneumoniae AR39] gi|8978399|dbj|BAA98236.1| integrase/recombinase [Chlamydophila pneumoniae J138] gi|33235871|gb|AAP97961.1| site-specific integrase/recombinase [Chlamydophila pneumoniae TW-183] Length = 312 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 40/294 (13%), Positives = 99/294 (33%), Gaps = 42/294 (14%) Query: 77 EYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDF------------------DYRKIT 115 +Y K + ++ ++ + + G+ + T Sbjct: 10 DYLKMVKSA--SPHTLRNYCLDLNGLKIFLEERGNLAPSSPLQLATEKRKVSELPFSLFT 67 Query: 116 TKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 +H+R + + + L+S++ + V Q+ + NP ++ P+ E Sbjct: 68 KEHVRMYIAKLIENGKAKRTIKRCLSSIKSFAHYCVIQKILLENPAETIHGPRLPKELPS 127 Query: 173 PWTKED----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228 P T M G + R E SGLR S+ Q + I+ + Sbjct: 128 PMTYAQVEVLMATPDISKYHGLRDRCLMELFYSSGLRISEIVAVNKQDFDLSTHLIRIRG 187 Query: 229 T-GTIITVELPDGFMKLLAMTPIGKET---------FFINNDKQKMNATQFSIWFKAKAT 278 + + ++ + + + F+N ++++ F+ Sbjct: 188 KGKKERIIPVTSNAIQWIQIYLNHPDRKRLEKDPQAIFLNRFGRRISTRSIDRSFQEYLR 247 Query: 279 KAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 ++G+ + + H +R AT ++G + A G +++ YT+ + +++ Sbjct: 248 RSGLSGHITPHTIRHTIATHWLESGMDLKTIQALLGHSSLETTTVYTQVSVKLK 301 >gi|289450299|ref|YP_003475200.1| site-specific tyrosine recombinase XerC [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184846|gb|ADC91271.1| site-specific tyrosine recombinase XerC [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 366 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 42/314 (13%), Positives = 92/314 (29%), Gaps = 54/314 (17%) Query: 74 LISEYRKSAH-WGSLAVNSRISFESYFDQIIRK-------------SGDFDYRKITTKHI 119 ++++ + + + R IT + Sbjct: 44 ALTDFLAYLSGIKGRSALTIKEYHYDLVLFFRYYKILQKRVPHDLDFRAIPLDDITEADL 103 Query: 120 RSG----------VESRKHTPSSAIQ--FLTSMRVLFKWAV-RQEYVAINPCLSVERPKR 166 + + S+A + + ++R FK+ + + NP +E PK+ Sbjct: 104 NQIDLKILYSFIGWLANEKKASTANRSRKIATLRSFFKYHHTKTRLIKENPAAELESPKQ 163 Query: 167 KTEGIRPWTKEDMQQFKS-----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221 + R E+ +Q + + L GLR ++ C + + + Sbjct: 164 LKKQPRYLEVEESKQLLQTVAQANSNFSQRDYCILTLFLNCGLRLAELCGINLGDIGEDT 223 Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK----------------QKMN 265 K G TV L + L ++ + + +++ Sbjct: 224 LR-VLGKGGKERTVYLNGACIAALNAYLPERKQQKNSFNSAEKKQAETPLFISRQGNRIS 282 Query: 266 ATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAET 321 + + AG++ + H +R +AT+ G L G +V E Sbjct: 283 HPAVQLLVRKYIILAGLDPHKYTPHKLRHTAATLMYKYGHVDIRMLQQILGHSSVATTEI 342 Query: 322 YTK-GADRIRLGIK 334 YT AD + ++ Sbjct: 343 YTHLDADSLHNAVE 356 >gi|170293839|gb|ACB12975.1| IntI 1 [Aquabacterium sp. PL1F5] gi|170293900|gb|ACB13034.1| IntI1 [Imtechium sp. PL2H3] Length = 337 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 36/303 (11%), Positives = 85/303 (28%), Gaps = 52/303 (17%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132 ++ + R+S + ++ + ++ + IR G + + + + + + S Sbjct: 16 VLDQLRESIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 ++ L + + + + RP+ T +++ + + Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230 RL + L +G+R S+ + V+ L + +I ++ Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193 Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265 + + A + + M Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253 Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 F FK +AG+ K + H +R AT +G + G V YT Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313 Query: 324 KGA 326 Sbjct: 314 HVL 316 >gi|332041695|gb|EGI78047.1| phage integrase [Hylemonella gracilis ATCC 19624] Length = 369 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 47/312 (15%), Positives = 88/312 (28%), Gaps = 52/312 (16%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKH 128 L+ +Y LA + + D++ + ++ + H+R + Sbjct: 35 DALVLQYLAHVRVEKRLAQRTVELYTLDLDKLGEFARQAGVSLLQVHSAHVRRWIAQMHA 94 Query: 129 TPSS---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 S L+ R + W RQ Y+ NP V PK + + +D + S+ Sbjct: 95 GGRSGRGIALILSGWRGFYAWLGRQGYITSNPVQDVRAPKAAKPLPKALSVDDAVRLASY 154 Query: 186 ------------------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227 ++ E L SGLR S+ V + + + Sbjct: 155 RGGESGADTPQGDALDDDPWFSARDAAMTELLYSSGLRVSELTGLDVAPSEAARKAGRGW 214 Query: 228 KT------------GTIITVELPDGFMKLLAMT-------------PIGKETFFINNDKQ 262 G V + K L G+ FI + Sbjct: 215 LDLQAGEVEVQGKGGKRRAVPVGTAARKALLQWLEVRGQGVSAAALQDGQTALFIGRNGT 274 Query: 263 KMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320 ++ K ++ AG+ H +R A+ + + G + + Sbjct: 275 RLTPQSIWQRLKRRSLLAGLATPVHPHMLRHSFASHVLQSSGDLRAVQELLGHANIGTTQ 334 Query: 321 TYTKGADRIRLG 332 YT+ D L Sbjct: 335 VYTR-LDFQHLA 345 >gi|317051479|ref|YP_004112595.1| integrase family protein [Desulfurispirillum indicum S5] gi|316946563|gb|ADU66039.1| integrase family protein [Desulfurispirillum indicum S5] Length = 303 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 42/266 (15%), Positives = 85/266 (31%), Gaps = 24/266 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTS 139 + + + ++ G D++++T +R+ + R + + L + Sbjct: 19 KGCSPGTISKYSQELGRLAEHLYEQGIHDWQEVTHLELRAYLYQRAGNLSKHTFSTVLAT 78 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS--------FWSEGSQ 191 ++ F++ VR+E NP + P+R + P Q + + Sbjct: 79 LKSFFRFTVREEITHANPTTKLSFPRRSPQDKLPQYVNSEAQSEFLQQLLSLKRNFTNDR 138 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250 R L +G+R S+ C ++ I T+K G + + +K+L Sbjct: 139 NRSIIFTFLMTGMRTSELCSLKRSNVSAGTQTFIITRKGGKQQVLPMATELVKILDTYWT 198 Query: 251 GKE------TFFINNDKQKMNATQFSIWFKAKATKAGV----NKSAHGVRKFSATISADA 300 +F Q M + + + AH +R AT Sbjct: 199 PWYDAIPSEYYFCTKQGQPMTPRTIWHLVSRQLQRVDTLSCTKQGAHVLRHTFATNLVRR 258 Query: 301 GATAHELMATYGWKTVDQAETYTKGA 326 A E+ G V + YT + Sbjct: 259 KANLIEIQNLLGHADVRMTQIYTHVS 284 >gi|242237763|ref|YP_002985944.1| site-specific tyrosine recombinase XerC [Dickeya dadantii Ech703] gi|242239427|ref|YP_002987608.1| site-specific tyrosine recombinase XerC [Dickeya dadantii Ech703] gi|242129820|gb|ACS84122.1| integrase family protein [Dickeya dadantii Ech703] gi|242131484|gb|ACS85786.1| integrase family protein [Dickeya dadantii Ech703] Length = 366 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 49/333 (14%), Positives = 96/333 (28%), Gaps = 32/333 (9%) Query: 47 YMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS 106 AL P P +L L+ + + + + + + + I + Sbjct: 7 RADALLTVDDVYRKPIGPASDPKSLYALLLRFVAWRRERNWSETTLKTQTHHQYRFILWA 66 Query: 107 GDFDY---RKITTKHIRSGVESRKH---------TPSSAIQFLTSMRVLFKWAVRQEYVA 154 + R IT + + + L + V F W R + Sbjct: 67 AERGLHYGRDITLPILEHYQRHLYQYRKPNGEPLSTRTQRSQLGPLVVWFGWMTRHHLLL 126 Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-----GSQPRLAFEFLLYSGLRCSDS 209 +P + P+ + R + + G + R E L +G+R + Sbjct: 127 ADPASGLVLPRLEKRLPRHILSVADVEQVLALPDLTTLQGIRDRALMELLWSTGIRRGEV 186 Query: 210 CRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--- 264 V + +I +I K + + ++ L + N Sbjct: 187 AVLEVYSVDASRHIVTIVQGKGKKDRVIPVGQRALRWLTYYVQAVRPQLLVNPHCPALFV 246 Query: 265 --------NATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWK 314 + +G+ K S H R AT + GA + A G Sbjct: 247 ALDGVEGLTPNGITNLVSHYIKASGIAKWGSCHLFRHAMATQMLENGADLRWIQAMLGHA 306 Query: 315 TVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347 +V+ + YT+ + R + S + DSD+ Sbjct: 307 SVESTQIYTQVSIRALQAVHASTHPAEQPDSDE 339 >gi|228471614|ref|ZP_04056388.1| tyrosine recombinase XerC [Capnocytophaga gingivalis ATCC 33624] gi|228277033|gb|EEK15719.1| tyrosine recombinase XerC [Capnocytophaga gingivalis ATCC 33624] Length = 296 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 38/276 (13%), Positives = 85/276 (30%), Gaps = 24/276 (8%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGV---ES 125 Y S + ++ ++ + + ++ IRS + Sbjct: 3 EAFENYL-SLE-KKYSSHTVTAYLADVQEFAAYLTEVEPTMLLPQVNYSLIRSWIIHLVE 60 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 R T S + L S++ + + VR + +P + K + P++ ++ S Sbjct: 61 RGITNRSINRKLASLKAYYAFLVRTLAIKASPFVPHIPLKAPKKISIPFSSREIDSVLSQ 120 Query: 186 WSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELPD 239 + + E +G+R ++ + + K + L Sbjct: 121 PIVEDSYTQMRNKTIIELFYATGMRRAELIDLKISDIDFSQKTVKVLGKRNKERIIPLIH 180 Query: 240 GFMKLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKA--GVNKSAHGVR 290 ++ L + F+ + +KM + + A + KS H +R Sbjct: 181 TVVETLEKYLTLRKGVETNEVFLFLTDKGKKMYPKLVYNIINSYFSTATTKLKKSPHVLR 240 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 AT D GA + + G + + YT + Sbjct: 241 HSFATHLLDNGADLNAVKELLGHAGLAATQVYTHSS 276 >gi|52841461|ref|YP_095260.1| site specific recombinase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628572|gb|AAU27313.1| site specific recombinase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 405 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 50/373 (13%), Positives = 104/373 (27%), Gaps = 59/373 (15%) Query: 18 HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTP----KREYINSPRKKPTTLKW 73 G + Y + G +I + T A A+ K +L Sbjct: 37 SGTMRYVCQYKRGGKINIGTVGVMTPAQAREKAVEILNDFNKGIDPKAKRGSNKLKSLGE 96 Query: 74 LISE----YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--- 126 + + H + + FD++ +IT I R Sbjct: 97 FFENEYTPWVLTHHKRG--DKTLATIRRCFDKLF----SKPLEEITPSIIEQWRIKRLND 150 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDMQQFKSF 185 + ++ + + +++ LF AV ++ N +++ K +R + ++ + + Sbjct: 151 GISNATLNRDIGTLKSLFTKAVEWGFIKENYLKNLKLSKIDRAPKVRYLSIDEERNLRRA 210 Query: 186 WSE-----------GSQPRLAFEFLLY---------------------SGLRCSDSCRAG 213 E G++ R A + L +GLR + Sbjct: 211 LFEREGKLKQDRKRGNEWRQARGYDLLPEYEENELCDYLTPMVLISINTGLRQGELFHLT 270 Query: 214 VQHLQNNIFSIKT----QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA--T 267 + + SI K + + L + ++ + K N Sbjct: 271 WEMIDLQERSIIIAGQITKNSSSRYIPLNNEVYGIIKQLYEKSNSKKGLVFLSKDNKPFN 330 Query: 268 QFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 + KA + H +R A+ AG + + G + Y A Sbjct: 331 NIKRSWTTILKKAQITEFRWHDLRHHFASKLVMAGIDLNTVRELLGHSDIKMTLRYAHLA 390 Query: 327 DRIRLGIKNSRRI 339 + IK +I Sbjct: 391 PEHK--IKAVNKI 401 >gi|117919693|ref|YP_868885.1| phage integrase family protein [Shewanella sp. ANA-3] gi|117612025|gb|ABK47479.1| phage integrase family protein [Shewanella sp. ANA-3] Length = 399 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 57/365 (15%), Positives = 103/365 (28%), Gaps = 30/365 (8%) Query: 7 LPPFVTKERTRHGKI----IYYFRKGHGRRIRLPYPHESTFIPAY-----MSALTGSTPK 57 L P + T G+ Y G R+ L E T A A Sbjct: 27 LVPGFLCKITPAGRKVFMLQYRTNAGERRKPALGLYGELTVEQARSLAQSWLAEVRRGGD 86 Query: 58 REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITT 116 + +K T+K L ++ + +++ ++ D+ II G + + Sbjct: 87 PGAAKAEARKAPTVKELCVKFMEDYSRHRNKPSTQRGYQGNIDRNIIPILGRMKVQDVKR 146 Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + + ++ + P A + L+ +R +F A Y P Sbjct: 147 ADVAAMMKKLDYKPGEANKALSVLRKMFNLAEIWGYRTDGSNPCRHIPLYTGGKTTRLIT 206 Query: 177 EDMQQFKSFW-----SEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228 ++ +EG P LA R S+ + + + Sbjct: 207 DEEMVKLFKHLDQIEAEGLVPYVVPLAIRLQFEFAARRSEIVLLEWEWIDLENRRVVWPD 266 Query: 229 TGTIITVELPDGFMKLL-----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 + T + L N + ++ + AGV Sbjct: 267 SKTGGMSKPMSEEAYRLLSTAPRQPGARYVLPSPRNPLTHLTYGEYYGGWTRTLKAAGVP 326 Query: 284 K-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342 HG+R SAT A++G M KTV Y D R+ + + Sbjct: 327 HVGTHGIRHRSATDIANSGIPVKVGMVLTAHKTVTMFMRYIHTED------DPVRQAAEL 380 Query: 343 VDSDD 347 V + Sbjct: 381 VANRR 385 >gi|296446709|ref|ZP_06888649.1| integrase family protein [Methylosinus trichosporium OB3b] gi|296255830|gb|EFH02917.1| integrase family protein [Methylosinus trichosporium OB3b] Length = 423 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 42/352 (11%), Positives = 95/352 (26%), Gaps = 43/352 (12%) Query: 26 RKGHGRRIRLPYPHESTFIPAYMSALT-----GSTPKREYINSPRKKPTTLKWLISEYRK 80 R G +++++ +T A AL + + T + + ++ Sbjct: 51 RNGRSQKVKIGVFGPTTAEQARAQALNLLGAIEAGADPVAERRAARAVRTFRQVAEDFMA 110 Query: 81 SAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 + S+ ++ + G +I + + TP A ++ Sbjct: 111 QHVLTKRKPRTAESYRCLLDKYVLPELGAKRIVEIGRADVARLHSNLGTTPRQANAAVSV 170 Query: 140 MRVLFKWAVRQE-----------------YVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + ++ WA R+E S E + R T+ Sbjct: 171 ISAIWGWAARREETEFGKNPATRLERFPERRWERYLSSEEMGRLGKALQRAETEGIPWMD 230 Query: 183 K------------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230 + A L+ +G+R + H+ ++ + Sbjct: 231 EEPQSKHGVKPENRRSIFDPFAVAAIRLLILTGMRPREVLNLEWGHVDFERGALFLPDSK 290 Query: 231 TIITVELPDGFM-----KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285 T + G +L + + +K + + + + + A GV Sbjct: 291 TGRKTVILGGPALRVLSELPRVEKCPFVIAGRSLEKPRADLNRPWVAVRRYAKLEGV--R 348 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNS 336 + +R A++ A A + G Y AD +R Sbjct: 349 LYDLRHSFASVGAGASLGLPIVGKLLGHSQPATTNRYAHLDADPLRHAANAI 400 >gi|239905577|ref|YP_002952316.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1] gi|239795441|dbj|BAH74430.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1] Length = 372 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 45/287 (15%), Positives = 91/287 (31%), Gaps = 19/287 (6%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTK-----HIRSGVE 124 L L S+Y + E I GD +T + I Sbjct: 86 LSELGSKYLAHMKASGRTEKHIRNIEHLVHHVFIPVLGDKPVDSLTYQEDMIPFILHFQG 145 Query: 125 SRKHTP-----SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 T + ++ + +F + + + ++NP + ++PK + ++ T +D Sbjct: 146 VSSRTGKVRSQYTVNKYCDYLSFIFNFGIDNGFTSVNPLKNWKKPKVQPWDMK-LTLDDA 204 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVEL 237 ++ + + F L + S+ + + +++ KT T TV + Sbjct: 205 KKIMVNAEPHLKWAMEVCFNLGTRPGESELLSLKWEDIDFKASTVRIYASKTKTYRTVPI 264 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSAT 295 F+K L +T ++ + T FK +AG+ + +R AT Sbjct: 265 NPEFLKRLEKEQAESQTGYVIEYMGRK-LTTIRKAFKNACKRAGITYQTRMYDLRHLFAT 323 Query: 296 ISADAGATAHELMATYGWKTVDQAE-TYTKGAD-RIRLGIKNSRRIS 340 GA + G TV TY + + + Sbjct: 324 TLLRKGADLAAVSKMMGHSTVKMTADTYYHYMEGEKERAVNLLPALE 370 >gi|226306026|ref|YP_002765986.1| tyrosine recombinase XerC [Rhodococcus erythropolis PR4] gi|226185143|dbj|BAH33247.1| tyrosine recombinase XerC [Rhodococcus erythropolis PR4] Length = 310 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 39/293 (13%), Positives = 90/293 (30%), Gaps = 30/293 (10%) Query: 68 PTTLKWLISEYRKSAHW-GSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSG 122 P +L + Y + + ++ ++ + S + D ++ +RS Sbjct: 8 PASLSVHLDAYAEHLRLSRGRSEHTIRAYVGDARALLTHFSAGSENADLDRLDLSVMRSW 67 Query: 123 ---VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + ++ + +S R W + ++++P + P + + Sbjct: 68 LAAQNAVGTARTTVARRASSARGFTAWLAQTGRISVDPGTRLAAPPARRTLPTVLRQSQA 127 Query: 180 QQFKSFWSEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTG 230 G + RL E L +G+R + C V+ + + ++ K Sbjct: 128 LDAMDAAESGAQQQEPLALRDRLIVELLYSTGIRVGELCGLDVESVDADRRLLRVLGKGN 187 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQK-----------MNATQFSIWFKAKATK 279 +V L ++ + S+ + A Sbjct: 188 KERSVPYGLPAESALNGWLEHGRPALSSDRSGRALLLGVRGGRLDQRQARSVVHETMAAI 247 Query: 280 AG-VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330 G + HG+R +AT + GA + G ++ + YT +R+R Sbjct: 248 PGAPDMGPHGLRHSAATHLLEGGADLRVVQELLGHASLATTQLYTHVSVERLR 300 >gi|154496658|ref|ZP_02035354.1| hypothetical protein BACCAP_00950 [Bacteroides capillosus ATCC 29799] gi|150273910|gb|EDN01010.1| hypothetical protein BACCAP_00950 [Bacteroides capillosus ATCC 29799] Length = 358 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 52/338 (15%), Positives = 104/338 (30%), Gaps = 37/338 (10%) Query: 17 RHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 + G ++R G R + T A + ++ T + Sbjct: 8 KRGTWYVMAWYRDWTGERKQKCKRGFPTKREAQDWERSFQMQTAADMD------MTFEAF 61 Query: 75 ISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR------K 127 + Y K L N+ ++ E+ +I+ G +ITTK + + + Sbjct: 62 VELYTKDVRPR-LKENTWLTKENIIQKKILPYFGKRKISEITTKDVIAWQNELLAYRDEQ 120 Query: 128 HTPSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERP-KRKTEGIRPWTKEDMQQFK 183 P S + +F AVR + NP + + + WTK + Q+F Sbjct: 121 RKPYSQTYLKTLHNQLSAIFNHAVRFYELRSNPAAKAGNMGTEERKEMLFWTKAEYQRFA 180 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------- 232 + AFE L + G+R + +K K+ Sbjct: 181 EAMMDKPLSYYAFEMLYWCGIREGELLALTPADFDFEAGMVKISKSYQRLHGEDVITTPK 240 Query: 233 -----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SA 286 T+++P+ + + + + A +AGV + Sbjct: 241 TKKSNRTIKMPNFLCDEMRDYLGMLYGVKKKDRIFTVTKSYLHHEMDRGAKEAGVKRIRI 300 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R ++ D G +A + G ++++ Y Sbjct: 301 HDLRHSHISLLIDMGFSAVAIADRVGHESIEITYRYAH 338 >gi|325963702|ref|YP_004241608.1| tyrosine recombinase XerC subunit [Arthrobacter phenanthrenivorans Sphe3] gi|323469789|gb|ADX73474.1| tyrosine recombinase XerC subunit [Arthrobacter phenanthrenivorans Sphe3] Length = 308 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 40/293 (13%), Positives = 91/293 (31%), Gaps = 30/293 (10%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHT 129 + Y + ++ ++ + ++ + G + R + ++ Sbjct: 15 DAFARYLAAERA--VSPHTLRGYVGDVRGLLSHASIEGAKRLEDLELGTFRRWLGAQSQA 72 Query: 130 PS---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED-------- 178 + + + S+RV WA+ +E + +P L ++ PKR+ Sbjct: 73 GAARTTLARRSASVRVFTAWALGEERIVADPALRLKAPKREASLPGVLHSGQLARLLAGL 132 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVEL 237 Q + + R E L +G+R + + L + +++ TV Sbjct: 133 AQAAEEGAPLALRNRAIVELLYATGVRVGELAGLDIDDLDPDRRTLRVIGKGNKERTVPY 192 Query: 238 ----------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--S 285 + L + F+ +++ Q + G Sbjct: 193 GVPAALAVDDWLRRGRPLVARSTSGQALFLGMRGGRVDQRQVRTMVNGLFKELGDTSASG 252 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSR 337 H +R +AT D GA + G ++ + YT DR+R + + Sbjct: 253 PHALRHSAATHLLDGGADLRAVQEILGHSSLATTQIYTHVSVDRLRKSYQQAH 305 >gi|312897736|ref|ZP_07757152.1| site-specific recombinase, phage integrase family [Megasphaera micronuciformis F0359] gi|310621120|gb|EFQ04664.1| site-specific recombinase, phage integrase family [Megasphaera micronuciformis F0359] Length = 361 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 56/379 (14%), Positives = 112/379 (29%), Gaps = 55/379 (14%) Query: 1 MTPSLRLPPFVTKER-TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE 59 M+ + P T +GK Y++ + A + Sbjct: 1 MSKIKKRPDGRYVMTFTTNGKRRYFY------------GRTRSEAQAKYDEFIKKSENLA 48 Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKH 118 + T+ E+ + S+ ++ S+ + I+ + G +T Sbjct: 49 NFD----GNITIAEWAKEWLRIKEP-SITPSTLDSYRNVIRHYIVPEIGTIKLVDLTAPT 103 Query: 119 IRS--GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 IR ++ + + T + + K AV E +A N V +PK Sbjct: 104 IRRLLTIKMETLSSRTVRYIHTLLNAMLKQAVLDEIIATNAAAKVRKPKLHRTKEMVTLT 163 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG------ 230 D + + + F+ SGLR S+ ++ + +I +T Sbjct: 164 ADEVKLFLSKIPIPEHHMLFKLAFASGLRRSELLGLPWSNVDLDKKTITITQTVIKIDNE 223 Query: 231 -----------TIITVELPDGFMKLLAMT-------------PIGKETFFINNDKQKMNA 266 + ++ L D + L + + F D + + Sbjct: 224 AVISETTKNASSRRSITLDDETIAELKKHAQRVKATRLASPNWVHNDLVFPGKDGKPIFP 283 Query: 267 TQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324 S K A + G S HG R AT+ +AG + G + + TY+ Sbjct: 284 DSVSQLCKRYAAQIGKPSFSMHGTRHTHATLLIEAGVNFKVIQVRLGHSSFTETMNTYSH 343 Query: 325 GADRIRLGIKNSRRISSVV 343 + +I ++ Sbjct: 344 LTPT--MEYDAVEKIEQIL 360 >gi|284045117|ref|YP_003395457.1| integrase [Conexibacter woesei DSM 14684] gi|283949338|gb|ADB52082.1| integrase family protein [Conexibacter woesei DSM 14684] Length = 313 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 44/288 (15%), Positives = 94/288 (32%), Gaps = 26/288 (9%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESR-- 126 + ++ A +R ++ Q +R + + + +R Sbjct: 18 WRRALALLESDLRRRGAAEKTRHAYAVDGGQFVRWADAHRLAPADVNPRALRRYAAGLTE 77 Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 P++ + L S+R LF+ V + NP + P++ ++ Sbjct: 78 AGQAPTTVGRKLASLRSLFRTLVEHGELQQNPADLLSAPRKAQRLPYVLKPVEVAALLDR 137 Query: 186 WSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDG 240 + + R FE SGLR + V ++ + ++ + G V + Sbjct: 138 IPADTALALRDRALFELAYASGLRAEELVMLDVGSIEFDGERVRVEGKGAKTRIVPAGEP 197 Query: 241 FMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKAT-KAGV----NKS 285 +K +A F++ ++++ + + A AGV S Sbjct: 198 ALKAIARYLDRARPALATAESDGALFLSKSGRRLSTSDVRRRLRVWARQAAGVSTAGGVS 257 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLG 332 H +R AT + GA + G ++ + YT+ R+R Sbjct: 258 PHALRHSFATHLLENGADLRSIQELLGHASISTTQVYTRVESARLRSA 305 >gi|152967083|ref|YP_001362867.1| phage integrase family protein [Kineococcus radiotolerans SRS30216] gi|151361600|gb|ABS04603.1| phage integrase family protein [Kineococcus radiotolerans SRS30216] Length = 344 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 40/292 (13%), Positives = 85/292 (29%), Gaps = 39/292 (13%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126 L+ + +Y L+ N+ ++ + +R G D ++ + V + Sbjct: 23 LRAAVGDYLAHLQVERGLSPNTLGAYRRDLARYVRFLAARGVHDPAQVDEAVVSGFVVAL 82 Query: 127 KHTPSSAI--------QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + A + +++R ++ + +P + V P T E+ Sbjct: 83 RTGADGAAVLTASSAARTASAVRGWHRFLHAEGRSDQDPAVLVRPPTPPRRLPTALTVEE 142 Query: 179 MQQFKSFWSEG---------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQN---------- 219 +++ G + E L G R S++ V + Sbjct: 143 VRRLLEVAGPGGEGERSPVALRDAALLEVLYGCGARISEAVGLDVDDVTPEVLGEGGLVR 202 Query: 220 ------NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273 + LA G F+N +++ Sbjct: 203 LRGKGSRERLVPLGPCARSALERYLARSRPQLAAQGRGTAALFLNTRGDRLSRQSAWAVL 262 Query: 274 KAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 ++ A +AG+ + S H +R AT GA + G +V + Y Sbjct: 263 QSAAQRAGIARAVSPHTLRHSFATHLLREGADVRVVQELLGHASVATTQVYA 314 >gi|309810355|ref|ZP_07704190.1| tyrosine recombinase XerD [Dermacoccus sp. Ellin185] gi|308435668|gb|EFP59465.1| tyrosine recombinase XerD [Dermacoccus sp. Ellin185] Length = 311 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 41/284 (14%), Positives = 88/284 (30%), Gaps = 32/284 (11%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126 L +++++ L+ ++ ++ + + G + + + + S Sbjct: 10 LTQVMTQWLHHLRVERGLSPHTLAAYRRDVTRYLGYLAASGVTSLDGVEESRVEAFLRSL 69 Query: 127 KHTP--------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + SSA + L ++R L + + V P+ + + D Sbjct: 70 REGGQGHPPLAASSAARALVAVRRLHAFVSLETDAPDA-ATDVAPPRLPRKLPKAIPLAD 128 Query: 179 MQQFKSFWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTI 232 +++ + +G + R E L G R S+ V + S++ K Sbjct: 129 VERLLAAAGDGEDAGSLRDRALLEVLYGVGARVSEVVGLDVDDVDLMSRSLRLFGKGSKE 188 Query: 233 ITVELPDGFMKLLAMTPIGKETFFI-----------NNDKQKMNATQFSIWFKAKATKAG 281 V L L + N +++ + A AG Sbjct: 189 RIVPLGRYAADALGSYLTRERPALAAKGKAGAAVFLNQRGGRLSRQSVFGLVRRAAEVAG 248 Query: 282 VNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 ++ S H +R AT + GA + G +V + YT Sbjct: 249 LDGEISPHTLRHSYATHLLEGGADVRVVQELLGHASVTTTQIYT 292 >gi|189184134|ref|YP_001937919.1| putative integrase [Orientia tsutsugamushi str. Ikeda] gi|189184809|ref|YP_001938594.1| putative integrase [Orientia tsutsugamushi str. Ikeda] gi|189180905|dbj|BAG40685.1| putative integrase [Orientia tsutsugamushi str. Ikeda] gi|189181580|dbj|BAG41360.1| putative integrase [Orientia tsutsugamushi str. Ikeda] Length = 379 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 54/329 (16%), Positives = 118/329 (35%), Gaps = 19/329 (5%) Query: 27 KGHGRRIRLPYP--HESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHW 84 KG R+I+L + L G K + TLK + Y Sbjct: 52 KGVYRKIKLGNFPNISVNYARKKTLILKGQIAKGIDPLKTKNAS-TLKEVYDLYINH--- 107 Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS-GVESRKHTPSSAIQFLTSMRVL 143 L +S+I ++ ++ ++ I + I ++K SA + L ++ + Sbjct: 108 RKLKDSSKILYKGIMNKYLKNLHYIHVSNIRKEDIYKIFNNAKKGGKYSANKTLKLIKAI 167 Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL--LY 201 AV E + NP ++ + R T E+M +F + E P L + LY Sbjct: 168 LNIAVELELIEKNPANGIK-IHKMQARDRYITLEEMPRFLAAVEEDKNPYLKYFVYISLY 226 Query: 202 SGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259 + R ++ ++++ ++ I K G TV L + ++ L E+ ++ Sbjct: 227 TAARRNNVLSMRWENIRLEEGVWYIPETKNGESQTVPLINLLIEKLKQYSYSSESEWVFP 286 Query: 260 DKQKMNAT--QFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTV 316 +++ + ++ +K +AG+ H +R+ + A G + Sbjct: 287 GQRRNSGHLTSINVAWKRVCKRAGLKNLRIHDLRRTVGSWMAKFGMPIAVISKLLNHNDH 346 Query: 317 DQAETYTK-GADRIRLGIKNSRRISSVVD 344 + Y + +R ++ ++ + Sbjct: 347 QSTKFYIHLNTNVVR---DAIQKFANEIA 372 >gi|300856827|ref|YP_003781811.1| putative phage integrase [Clostridium ljungdahlii DSM 13528] gi|300436942|gb|ADK16709.1| predicted phage integrase [Clostridium ljungdahlii DSM 13528] Length = 391 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 43/362 (11%), Positives = 103/362 (28%), Gaps = 49/362 (13%) Query: 32 RIRLPYPHESTFIPAYMSALTGSTPKREYINSP-RKKPTTLKWLISEYRKSAHWGSLAVN 90 RIR +T A + ++ + I ++ + LA + Sbjct: 32 RIRETDSGFTTKKEARAAGRKKEIELKDKTTLGFKNNKIKFSKFIVDWLNTIKPQ-LANS 90 Query: 91 SRISFESYFDQI-IRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFK 145 + + ++ D+I I GD KI I + ++ ++ Q+ + FK Sbjct: 91 TWVRYKIAVDKIMIPALGDKYLDKIKPSDINAMYLHCTNDLGNSTTTIRQYHWILSKAFK 150 Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205 A+R + + + +++ PK+ + + K+ + + + +G+R Sbjct: 151 NALRWKIIDYDIMTTIDPPKKAKRELTVYNKDQLFLLLDRI-KNLTCYMPVLLSSTTGMR 209 Query: 206 CSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----------------------------E 236 + C + + I + + + Sbjct: 210 LGELCGLRWKDVNLKDKEIYITRQLQKVDGELQLLELKTPTSKRKIPLLDYTIKGLEDLK 269 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK------ATKAGVNK-SAHGV 289 + K + D S + K + H + Sbjct: 270 QIQEYNKSKNENYDKRSFVICKEDGSPYEPNYVSKNYTRVMKQYNVCKKLNIPYIRFHDL 329 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVV--DSD 346 R AT+ A + G TV TY+ ++ ++ +++ + Sbjct: 330 RHTYATMLLVANTNPKVVSELMGHSTVSMTLNTYSHVLPSLK--ENAINKLENLLFPGDE 387 Query: 347 DP 348 +P Sbjct: 388 NP 389 >gi|327312659|ref|YP_004328096.1| site-specific recombinase, phage integrase family [Prevotella denticola F0289] gi|326944074|gb|AEA19959.1| site-specific recombinase, phage integrase family [Prevotella denticola F0289] Length = 407 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 50/362 (13%), Positives = 98/362 (27%), Gaps = 28/362 (7%) Query: 1 MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60 M ++ + R + +Y K R + + Sbjct: 54 MIGKPKV--HIKHNRRKENLQLYLIAKPRTPAERQQNKETLELAAKIRAEREQQFKESML 111 Query: 61 -INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--------FDY 111 + + Y S L + ++ + Sbjct: 112 GYRLKKDRSINFLDYYQAYIDSYTKKDL-----RMIKIALNRFKDFLKEQYPVYEFSIKP 166 Query: 112 RKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169 IT ++ VE + A + + ++A+ E + +PC V Sbjct: 167 ELITKDMMKHFVEYLQSRSVGEGAKSIYQRFKKVVRYAIDHEVMQKDPCKGVVCKVDDQV 226 Query: 170 GIRP---WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226 + + + +E R AF LY GLR D +++ +K Sbjct: 227 LRKDVLSMDEIQSLIQCHYENENPNVRRAFILCLYCGLRFCDVKDLTYKNVDYTNRLLKF 286 Query: 227 QKTGTIITVELPDGFMKL---LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 ++ T + L L ++ + S K +AG+N Sbjct: 287 EQNKTKGHSAHSGVIIPLNDGLLSLIGEAPEDLSSSIFNLPSYESCSKSVKRWVKRAGIN 346 Query: 284 K--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 K S H R A + GA + + G + E YT+ D +L + + Sbjct: 347 KHISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVD--KLKSEAINSLPE 404 Query: 342 VV 343 + Sbjct: 405 LK 406 >gi|298293261|ref|YP_003695200.1| integrase family protein [Starkeya novella DSM 506] gi|296929772|gb|ADH90581.1| integrase family protein [Starkeya novella DSM 506] Length = 328 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 38/321 (11%), Positives = 91/321 (28%), Gaps = 46/321 (14%) Query: 36 PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSA-HWGSLAVNSRIS 94 A ++ L G+ P + + + H L+ +R + Sbjct: 2 ASTDAQKAARAEIALLAGAAPD-------------VAVALKGWLARLGHERRLSPKTREA 48 Query: 95 FESY----FDQIIRKSGDFD----YRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVL 143 + + R+ G ++ + +R+ + +R+ + ++FL + R Sbjct: 49 YARDMSIFLGLLARQIGRQPEIADLANLSPREVRAVIAARRAEGIEARTQMRFLAAARSF 108 Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF---------KSFWSEGSQPRL 194 + R+ + +V P+ RP + D + + + Sbjct: 109 GRHMEREGLGKVGALTAVRAPRIARTLPRPLSPADARAMADPATRAGEEREPWVLMRDAA 168 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNN---IFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251 L SGLR S++ + + + K G V + +++ Sbjct: 169 VIALLYGSGLRISEALGLMRRDMPEPGRGDQIVVHGKGGKTRMVPVLRQVAEMVDAYVCA 228 Query: 252 KETF-------FINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGA 302 F ++ + + G+ + H +R AT G Sbjct: 229 CPYELEPSSSLFRGAKGGPLSPRIVQLAVERMRGGLGLPDSATPHALRHSFATHLLGRGG 288 Query: 303 TAHELMATYGWKTVDQAETYT 323 + G ++ + Y Sbjct: 289 DLRSIQELLGHASLSTTQIYA 309 >gi|330834471|ref|YP_004409199.1| phage integrase family protein [Metallosphaera cuprina Ar-4] gi|329566610|gb|AEB94715.1| phage integrase family protein [Metallosphaera cuprina Ar-4] Length = 284 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 43/281 (15%), Positives = 89/281 (31%), Gaps = 30/281 (10%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE---------- 124 + +S + + S + ++ + + ++TT+ + + + Sbjct: 15 FQYFIQSLKLSGAGQGTIKLYYSAINDFLKFV-NKNPNEVTTQDVINWINVLSVREGRSK 73 Query: 125 --SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 RK S+ ++ ++R +W P+ +T R +E + Sbjct: 74 TGDRKGRASTIRSYVIAVRRFLRWLGVNV--------RPPVPRIRTPERRAL-RESEIEN 124 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDGF 241 + + R LL +GLR S+ V L +I+ ++T + Sbjct: 125 IISSCKRLRDRALISLLLDTGLRSSELLSITVGDLDLQERTIRVRETKNGEERIVFFTAR 184 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300 L I K N ++ K K G++ H +R AT + Sbjct: 185 TASLLNQFIRKTKKGENERVFEITYQALYKLVKRLGKKNGISWLRPHILRHTFATNAIKK 244 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 GA + G K + + YT L + +R+ Sbjct: 245 GAPLPVVQRLLGHKDIKTTQIYTH------LMTDDLKRVYR 279 >gi|306831022|ref|ZP_07464184.1| phage integrase family site-specific recombinase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304427045|gb|EFM30155.1| phage integrase family site-specific recombinase [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 385 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 54/364 (14%), Positives = 103/364 (28%), Gaps = 46/364 (12%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63 ++ K R IY G + + + E Sbjct: 9 KKSKTGYLYKVR------IYRVIDGKRHDYFKSGFKTRREAKEHEAIIYHKKLTGELTEL 62 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 + T + + E+ K+ S + + + I+ G+F KIT + + Sbjct: 63 LKASERTFEEVFEEWFKTYQDTVERTTSVRTDDMFRLHILPILGNFKISKITPWQCQEFI 122 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + T + Q + +F +AV+ + +A NP + PKR + + D Sbjct: 123 TEKGKTFRNIKQVKSYANQVFNFAVKMKLIAENPMRDITLPKRDHKQSDNFFNVDELHEF 182 Query: 184 SFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS----------------I 224 E + F L YSGLR + + + Sbjct: 183 LAIVKAEESYKDYALFRLLAYSGLRKGELYSLRWSDIDFDKQILSITKNLGRIRGKAVEK 242 Query: 225 KTQKTGTIITVELPDGFMKLLAMT-------------------PIGKETFFINNDKQKMN 265 +T+ ++ + L D + +L + Q + Sbjct: 243 RTKNRFSVRQIPLDDETISILREWKVRSKKEKGQLSVTPLIENDYIFTFVDRDGKIQPLY 302 Query: 266 ATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYT 323 + K K + K S HG R AT+ + G G + +TY+ Sbjct: 303 QDYINYNLKRIIDKHNLKKISPHGFRHTHATLMIEIGVDPVNAARRLGHASSQMTLDTYS 362 Query: 324 KGAD 327 + Sbjct: 363 HVTE 366 >gi|253565241|ref|ZP_04842696.1| integrase [Bacteroides sp. 3_2_5] gi|251945520|gb|EES85927.1| integrase [Bacteroides sp. 3_2_5] Length = 395 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 48/287 (16%), Positives = 96/287 (33%), Gaps = 20/287 (6%) Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 + I Y + + S++S ++++ + +T K I Sbjct: 115 TENSFTDYILNYLNENKSRLRSESWW-SYKSQITKLLKFRKHISFADLTEKFINEYQHYM 173 Query: 127 KHT----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 +T ++ + L S+R A+R + NP K+ + E++ + Sbjct: 174 LYTLHNNENTVSKSLRSLRTFINIAMRYGLIKTNPFK-YITIKKVDGKRDFLSAEELSKL 232 Query: 183 KSFWSEGSQ-------PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 + F F Y+GLR SD ++NNI I KT ++++ Sbjct: 233 SDAYISNKIIDEQEKEVLQYFLFSCYTGLRYSDLKMLKTSSIKNNILHINMHKTNCLVSI 292 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293 L ++LL + + K+ K + G+ K + H R Sbjct: 293 PLSQKALQLLPNKINSESDYVFRVYCNKVTNR----VLKQVGKRYGIPKKLTCHVARHTF 348 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSRRI 339 AT+S G + G ++ + Y K D ++ ++ Sbjct: 349 ATVSIILGIPIEVVSKLLGHSSLKTTQIYAKIVDSVKEREMEKWDKL 395 >gi|311693141|gb|ADP96014.1| site-specific tyrosine recombinase XerC [marine bacterium HP15] Length = 310 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 33/279 (11%), Positives = 89/279 (31%), Gaps = 22/279 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSGVESRKH-- 128 ++E+ + + + S+ ++ G ++++T +R V + Sbjct: 9 LAEFIRHLASEKRHSPRTCDSYHRDLLRLADWLGRSGFVAWQRVTNHDLRRYVATLSREG 68 Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + S + L++ R +++ +R++ + NP L + PK R + + Sbjct: 69 LSGRSIARHLSATRRFYQFLLREKLASDNPALDIRAPKSGRRLPRVADVDQLNHLLDGQP 128 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMK 243 + + FE + SGLR ++ + + ++ G + + + Sbjct: 129 DDPLEVRDLCMFELMYSSGLRLAELASLDLDTVDVRSGEVRVMGKGGKERLLPVGRKAIA 188 Query: 244 LLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKA--TKAGVNKSAHGVRKFS 293 + + F++ ++++ A H +R Sbjct: 189 AIQAWVPYRAALANDGEAALFVSQRGERLSHRSIQARLSRWGISRGADQKLHPHLLRHSF 248 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 A+ ++ + G + + YT D L Sbjct: 249 ASHMLESSGDLRAVQELLGHADIATTQVYTH-LDFQHLA 286 >gi|288573040|ref|ZP_06391397.1| integrase family protein [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568781|gb|EFC90338.1| integrase family protein [Dethiosulfovibrio peptidovorans DSM 11002] Length = 263 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 40/240 (16%), Positives = 75/240 (31%), Gaps = 13/240 (5%) Query: 102 IIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158 + G D I T IR+ V S P+S + L++++ L K+ + + +P Sbjct: 7 FLETQGVSDVSDIATGEIRAFVRSLSGYGFAPASVGRKLSAIKSLMKYLFEERVIEKDPS 66 Query: 159 LSVERPKRKTEGIRPWTK----EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214 V P+R R + + +G + E L GLR ++ Sbjct: 67 GRVRGPRRSDRLPRAMSVEQVSRMIDCAYDDDEQGLRNGALIELLYGCGLRVAEVVSVRW 126 Query: 215 QHLQNNIFS-IKTQKTGTIITVELPDGFMKLLA-----MTPIGKETFFINNDKQKMNATQ 268 + ++ K V + L P + F T Sbjct: 127 EDVEIEERWLKVMGKGSKERAVPFGSMAQRALTGLRALSMPGDEYVFPGKKRGCLTVRTV 186 Query: 269 FSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 + A A + H +R AT + GA+ + G + + + Y + + Sbjct: 187 HRVVVAAAAKAGVNGVTPHSLRHSFATHLLEGGASLRVVQELLGHEHLTTTQRYLRITAQ 246 >gi|229162634|ref|ZP_04290594.1| Phage integrase [Bacillus cereus R309803] gi|228620897|gb|EEK77763.1| Phage integrase [Bacillus cereus R309803] Length = 387 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 36/360 (10%), Positives = 101/360 (28%), Gaps = 46/360 (12%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN--SPRKKPTTL 71 + +G Y + + + F + + + ++ +N P +L Sbjct: 11 RKVSNG-WQYRIKFKDPYTHQYKEKTKRGFKTKKEAQIAATEEEQRILNGFEIDSVPVSL 69 Query: 72 KWLISEYRKSAHWGSLAVNS-RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 K+ + ++ ++ N+ + + II + + + + ++ + Sbjct: 70 KYFLEDWLTVYKENTVRKNTFILHKRNIEKHIIPYFKNINLKDLKPMMYQNFLNHLTDQG 129 Query: 131 SSAIQFLTSMRVLFKWAVR-------QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 S R + + + + +S + K++ T + K Sbjct: 130 YSKGTVKIIHRTMNNAMCKANSLKKIETNPCSDAVISNKNQKKEEGLKYMRTGDIPLFLK 189 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-------------------I 224 + + + F+ L+ +G+R ++ + + Sbjct: 190 ASYQYNYIYYIFFKTLINTGMRKGEAAAIQWSDIDFKENTINITKTLDFQTKEGEDLFGD 249 Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN--------------ATQFS 270 + LL E + + K + + Sbjct: 250 TKTFSSRRTITIPDSLAKDLLNHKKWQNENKLVLQESYKHDLNLVFTKVDGSHLPKSTLF 309 Query: 271 IWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADR 328 KA + HG+R A + ++GA + G K+++ Y+ +D+ Sbjct: 310 NALTRILKKAELPYLEIHGLRHTHAVLLLESGANLKYIQERLGHKSIEMTSNIYSHISDK 369 >gi|163795288|ref|ZP_02189255.1| putative integrase/recombinase protein [alpha proteobacterium BAL199] gi|163795386|ref|ZP_02189353.1| putative integrase/recombinase protein [alpha proteobacterium BAL199] gi|163796178|ref|ZP_02190140.1| putative integrase/recombinase protein [alpha proteobacterium BAL199] gi|159178637|gb|EDP63177.1| putative integrase/recombinase protein [alpha proteobacterium BAL199] gi|159179274|gb|EDP63805.1| putative integrase/recombinase protein [alpha proteobacterium BAL199] gi|159179372|gb|EDP63903.1| putative integrase/recombinase protein [alpha proteobacterium BAL199] Length = 276 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 34/274 (12%), Positives = 89/274 (32%), Gaps = 18/274 (6%) Query: 79 RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQ 135 + +L+ ++ S+ + R D ++ + +R+ + ++ Q Sbjct: 2 IEDMTVRNLSPATQRSYVLAVSKFSRYF-DRSPDRLGLEDVRAFQVHLVSTGISWAALNQ 60 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195 + ++R + + + + + + +++ +F + R A Sbjct: 61 TVCALRFFYGVTLGHGEIP----ERIPYAREPRNLPVVLSADEVVRFLEAV-ASLKSRAA 115 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKE 253 +GLR S+ V + + I+ K G V L + +L Sbjct: 116 LTTAYAAGLRVSEVVALRVGDVDSGRMVIRVEHGKGGKDRYVMLSAQLLGILRTYWRLAR 175 Query: 254 TFFINND----KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHEL 307 + ++ ++ AG++K + H +R AT ++G + Sbjct: 176 PEHWLFPGREASKPIDVQVLHAACRSARAAAGLDKRVTVHTLRHSFATHLLESGTDIRII 235 Query: 308 MATYGWKTVDQAETYTKGADRI-RLGIKNSRRIS 340 G + YT+ ++ + R R++ Sbjct: 236 QVLLGHANLSTTARYTQVSNGLIRRTESPLDRLA 269 >gi|121595977|ref|YP_987873.1| tyrosine recombinase XerC [Acidovorax sp. JS42] gi|120608057|gb|ABM43797.1| tyrosine recombinase XerC [Acidovorax sp. JS42] Length = 323 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 41/295 (13%), Positives = 77/295 (26%), Gaps = 40/295 (13%) Query: 77 EYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTPSS- 132 +Y + LA + + ++ + D ++T+ HIR V S Sbjct: 16 QYLEHVRVEKRLAARTLTLYTLDLQRLAAMAAGVDLPLLRLTSAHIRRFVAQMHAGGRSG 75 Query: 133 --AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---- 186 L+ R + WA RQ V NP V PK + ++ + Sbjct: 76 RGIALILSGWRGFYTWAARQGLVPHNPVQDVRAPKAPKPLPKALPVDEAVRLAEHQETGA 135 Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------GTI 232 ++ E L GLR + V + Sbjct: 136 DPWLETRDAAIVELLYGCGLRVGELVGLDVAPSPAAHQQGRGWVDLQAGEAHVFGKGSKR 195 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKM-------------NATQFSIWFKAKATK 279 +V + L + ++ A + ++ Sbjct: 196 RSVPVGRAAAAALQAWLAQRALPLGAAGAARLEPALFIGRRGARLTAQSVWSRLRQRSQV 255 Query: 280 AGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 AG+ H +R A+ + + G + + YT+ D L Sbjct: 256 AGLTTPVHPHMLRHSFASHLLQSSGDLRAVQELLGHANITTTQVYTR-LDFQHLA 309 >gi|187934545|ref|YP_001886950.1| phage integrase [Clostridium botulinum B str. Eklund 17B] gi|187722698|gb|ACD23919.1| phage integrase [Clostridium botulinum B str. Eklund 17B] Length = 335 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 39/260 (15%), Positives = 82/260 (31%), Gaps = 13/260 (5%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--SRKHTPSS 132 Y L+ + +++ + +++ + I+T +R + + S+ Sbjct: 62 AQLYLACKKLEGLSSKTLYNYKLFLNKLDQYF-TKPCSTISTMDLRMFLALLGKGKKAST 120 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 ++T ++ F W +EY+ NP +++ K + + K + + E + Sbjct: 121 VNGYITYLKNFFGWLQNEEYIIKNPAFKLKQAKVPKVILEGY-KAENLEKLREACETKRE 179 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLAMTPIG 251 + FE L + R S+ +Q + N T K V L Sbjct: 180 KALFELLDSTACRISEIQNIKLQDINWNEKSIKVTGKGSKERIVYFSTRAKLALENYLKS 239 Query: 252 KETFFINNDKQKMNA------TQFSIWFKAKATKAGVNKSAHG--VRKFSATISADAGAT 303 + + K K ++GV + H R+ AT + G Sbjct: 240 RNDDNNSLFISKKFHNRTLGVRSLQKTIKKIKERSGVTERVHTHKFRRTQATRLLNQGMR 299 Query: 304 AHELMATYGWKTVDQAETYT 323 + G T + Y Sbjct: 300 IEGVQGILGHTTPTTTQIYA 319 >gi|227503375|ref|ZP_03933424.1| site-specific tyrosine recombinase XerC [Corynebacterium accolens ATCC 49725] gi|227075878|gb|EEI13841.1| site-specific tyrosine recombinase XerC [Corynebacterium accolens ATCC 49725] Length = 305 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 41/280 (14%), Positives = 82/280 (29%), Gaps = 23/280 (8%) Query: 72 KWLISEYRK-SAHWGSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVESRK 127 I ++ A + + + + DF+ + + + + V K Sbjct: 18 DEAIEDFADFQLCVKGRAEATVRGYRADLKNLAQDIDTFADFNLNNL-RQWLGNAVAEGK 76 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-----QQF 182 + A + S++ WA R+ Y+ + + PK + Sbjct: 77 ARATLARRT-ASVKAFSTWAEREGYLTRDVAARLVTPKVGQHLPTVMAPQQAGELVGNAV 135 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 + + E L SG+R ++ R ++ + + + V Sbjct: 136 SVDEAHFQRDSAILELLYASGMRVAELVRLDIEDVDFKRSTARVTGKGNKQRVVPFGAAA 195 Query: 242 MKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWFKAKATKAGV-NKSAHGVRK 291 L G + Q +++ Q AT G + HGVR Sbjct: 196 TDALQQWIDGGRKEMARGETQAIFVGSRGARIDQRQVRRIVDKAATVTGTSGLTPHGVRH 255 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +AT + GA + G ++ + YT RL Sbjct: 256 LAATHLLEGGADLRVVQELLGHSSLSTTQIYTH-VSAKRL 294 >gi|330832570|ref|YP_004401395.1| integrase family protein [Streptococcus suis ST3] gi|329306793|gb|AEB81209.1| integrase family protein [Streptococcus suis ST3] Length = 298 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 40/279 (14%), Positives = 90/279 (32%), Gaps = 30/279 (10%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 I Y L+ ++ +++S Q G D R + + S+ Sbjct: 6 IQRYLDFCAIQRRLSSHTIRAYKSDLHQYYN-FGTNDIRS-----YLTFLNQHIKKTSTL 59 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWT-------------KEDM 179 + + S++ +K+ ++ ++ NP + K + + + + + + Sbjct: 60 KRKIASLKSYYKFLEEEKLISKNPFHQLRLHYKEEKKLPKTISLKDLQKIYCFAHQQIEN 119 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--IITVEL 237 + K + + L LL +GLR S+ C + ++ +I+ G + Sbjct: 120 SKNKHSMRKAMRNLLLISLLLSTGLRISELCNLKLDNINLENRTIQILGKGKKERLLYIG 179 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNAT-----QFSIWFKAKATKAGVNK--SAHGVR 290 D + LL + N + K + + K + H R Sbjct: 180 NDETLSLLEDYIAHHCSHSSYLFTGVKNDDHLKEPSVRLILKNISHSLQLKKHITPHMFR 239 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT+ D G ++ G ++ + YT + Sbjct: 240 HSFATMLLDNGVDIRQIQHLLGHSNINVTQIYTHVSQSK 278 >gi|313609398|gb|EFR85005.1| phage integrase [Listeria monocytogenes FSL F2-208] Length = 359 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 56/344 (16%), Positives = 104/344 (30%), Gaps = 39/344 (11%) Query: 12 TKERTRHGKII--YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 ++ + G +Y++ G+R++ T A + S Sbjct: 4 YRDEDK-GNWFVSFYYQDWKGKRVKKLKRGFKTKKEA------QEWENNFKLQSENNLDM 56 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR-- 126 K +S Y KS + N+ IS E + +II G+ +I I Sbjct: 57 KFKDFVSMY-KSDIKTRVKYNTWISKEYIINLKIIPAFGERKINEIKPSDIIQWQNELIG 115 Query: 127 -------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP--WTKE 177 +P+ + +F AVR + NP +V K WTKE Sbjct: 116 YRNDRGEGFSPTYLKAIHNQLTAIFNHAVRFYDLKSNPARTVGCMGSKKSDKEMLVWTKE 175 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----- 232 + +F + AFE L + G+R + ++ K+ Sbjct: 176 EYIKFSDSMMDKDISFHAFEILYWCGIRVGELLALTPSDFNFEEGTVSITKSYQRIKGED 235 Query: 233 -----------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 + +PD + + + + K AT+ Sbjct: 236 IITTPKTEKGKRIINMPDFLVDEMQDYISRLYGCKPKSRIFPITKAVLYSEMKRGATEQN 295 Query: 282 VNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + K H +R ++ D G +A + G +++D Y Sbjct: 296 IKKIRIHDLRHSHVSLLIDMGFSAVAIADRVGHESIDITYHYAH 339 >gi|121535734|ref|ZP_01667537.1| phage integrase family protein [Thermosinus carboxydivorans Nor1] gi|121305699|gb|EAX46638.1| phage integrase family protein [Thermosinus carboxydivorans Nor1] Length = 393 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 41/333 (12%), Positives = 87/333 (26%), Gaps = 38/333 (11%) Query: 29 HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA 88 ++ Y AL Y++ T+ ++++ ++A Sbjct: 33 GKPVRKVVYARTKAEAKQKRDALAAQYEAAYYVD---ADKITVGDWLAKWLDVYARPAVA 89 Query: 89 VNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF---LTSMRVLF 144 ++ +E +I G ++ ++ + S SA + + + Sbjct: 90 PSTYDWYERICRVHLIPAIGHLRLSRLQQMAVQQLLNSLVDAGKSARTVQAVHSVLAMAL 149 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204 + A + + P V P+ + + RP T ++ + A +GL Sbjct: 150 RVARKHGLLRTLPTDDVAVPQVRKQDKRPLTPDEWDALLTAAQTAPDIFAALVVEWATGL 209 Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTII------------------------------T 234 R + + + I ++ I Sbjct: 210 RRGELLGLMWDDIDFDRCLINVRRAVQIRRGGCVLADPKTEATKRVLPVPKEVMQVLRAH 269 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSA 294 F + + +S F A AG++ H +R Sbjct: 270 RARQMQCRLAAGPAWQDCGLVFPTSGGTLYDPRNWSKRFARIAKAAGLDIGVHHLRHDLT 329 Query: 295 TISADAGATAHELMATYGWKTVDQ-AETYTKGA 326 + AGA E G TV + Y Sbjct: 330 SRIVAAGAPVKEAQYRLGHATVKMLLDVYAHRV 362 >gi|319788866|ref|YP_004090181.1| integrase family protein [Ruminococcus albus 7] gi|315450733|gb|ADU24295.1| integrase family protein [Ruminococcus albus 7] Length = 361 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 46/345 (13%), Positives = 106/345 (30%), Gaps = 37/345 (10%) Query: 14 ERTRHGKI--IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + + G+ G + + + T A + + + S T+ Sbjct: 7 YKRKDGRWECRIRVEDKDGHK-KYRSFYGKTQEEAEYKMMEETGGRNTSGESITV--MTV 63 Query: 72 KWLISEYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 + L E+ + ++ ++ I+ + G I T+ I ++ + Sbjct: 64 RELAWEWLFVMKNR-IKDSTASNYRMKIERHILPEFGAKVCASIKTRMISEFIQKKLSQG 122 Query: 131 SSAIQ---FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 SA +T M+ ++++A + + N V PK+ I T E+ ++ + + Sbjct: 123 LSARYVGDIITVMKAMYRYAANEYNI-TNVIEGVVMPKKAKPEINIMTAEEKRKLVYYIN 181 Query: 188 EGSQPR-LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246 LA L++G+R + C Q + + + T I K++ Sbjct: 182 TNHNETTLAVALSLFTGMRIGEVCALSWQDIDIEKRVLYVRHTIQRIQNYDGKSKTKIII 241 Query: 247 MTPIGKETFFINNDK-----------------------QKMNATQFSIWFKAKATKAGVN 283 P + + + FK+ + G+ Sbjct: 242 TEPKSQSSKREIPIPECLVPMLTELKRKPDSYVLTGTGTPIEPRTLQYRFKSILNRLGLG 301 Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA 326 + H +R A+ + + G L G + + Y + Sbjct: 302 SFTYHSLRHKMASEAIEIGFDVKTLSEILGHSSSQITLDRYVHSS 346 >gi|254452216|ref|ZP_05065653.1| integrase [Octadecabacter antarcticus 238] gi|198266622|gb|EDY90892.1| integrase [Octadecabacter antarcticus 238] Length = 389 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 49/328 (14%), Positives = 107/328 (32%), Gaps = 16/328 (4%) Query: 11 VTKERTRHGKIIYYFRKGHGR--RIRLPYPHESTFIPAYMSALTGSTPK-----REYINS 63 V GK Y +++ GR R+ L + T A A + + Sbjct: 36 VLAVTPAGGKSFYLYKRIDGRPERLLLGKFPDLTVENARKLAASAKGEIAMGENPQKAKR 95 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 + T L +EY + + S E ++ ++ I + Sbjct: 96 SIRDEMTFGALFTEYLE--KHSKVHKRSWAYDEREVNKFLKHWFKRKISSIEKPEVERLH 153 Query: 124 ES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 +++ A + L +R +F A + +NP +++ + K+ +E + Sbjct: 154 AKVGKENGLYQANRLLERIRSIFSKATDWGWNGVNPATGIKKYREKSRDRFLQPEELPRF 213 Query: 182 FKSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---IITVEL 237 F++ +E R F L +G R S++ + + + + +T I Sbjct: 214 FEALSNEPNEVARDFFMISLLAGARKSNTLAMRWDEISFHGETWRIARTKNDDPQIVHLS 273 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATI 296 P L + D + + +AG+ + H +R+ + Sbjct: 274 PQAMEILKERKLHSLSPWVFPGDGASGHLADPKKAWMRILKEAGIADLRIHDLRRTLGSW 333 Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324 A GA ++ + + G ++ Y + Sbjct: 334 QAATGANSYIIGKSLGHRSQQSTAVYAR 361 >gi|153840548|ref|ZP_01993215.1| tyrosine recombinase [Vibrio parahaemolyticus AQ3810] gi|149745789|gb|EDM56919.1| tyrosine recombinase [Vibrio parahaemolyticus AQ3810] Length = 362 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 25/160 (15%), Positives = 50/160 (31%), Gaps = 14/160 (8%) Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM 242 + + E L +GLR ++ ++++ ++ G V + + + Sbjct: 191 PNDPVELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVTGKGGKERLVPMGENAI 250 Query: 243 KLLAMTPIGKET----------FFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289 + F + ++M F K A AG++ S H + Sbjct: 251 DWIETFIQQGRPALLGETSSDVVFPSKRARQMTRQTFWHRIKYYAVIAGIDTDQLSPHVL 310 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + GA + G + + YT A Sbjct: 311 RHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER 350 >gi|315607470|ref|ZP_07882465.1| mobilizable transposon [Prevotella buccae ATCC 33574] gi|315250653|gb|EFU30647.1| mobilizable transposon [Prevotella buccae ATCC 33574] Length = 418 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 32/212 (15%), Positives = 65/212 (30%), Gaps = 3/212 (1%) Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + ++A + + + K A Y+ I+ ++ + + T +++ + + E Sbjct: 199 SRNTASTYFSIFKAALKQAFIDGYLTIDLSAKIKGIQEQESRREYLTLDELNKLANTPCE 258 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248 + A F +GLR D + + K T + Sbjct: 259 RDVLKRAALFSALTGLRHCDIQKLKWNEIAIEGNQAKLLFTQKKTKGVEYMPISEQAFKL 318 Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHE 306 + N + S +A KAG+ + S H R AT+ G + Sbjct: 319 CGEPRQPEQLVFEGLPNPSWISRPLRAWIEKAGIQKHLSFHCFRHTFATLQLANGTDIYT 378 Query: 307 LMATYGWKTVDQAETYTKGADRIR-LGIKNSR 337 + G V + Y K D + + Sbjct: 379 VSKMLGHTNVKTTQVYAKVVDEKKNKAANAIQ 410 >gi|300727390|ref|ZP_07060803.1| phage integrase family protein [Prevotella bryantii B14] gi|299775330|gb|EFI71927.1| phage integrase family protein [Prevotella bryantii B14] Length = 328 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 38/262 (14%), Positives = 79/262 (30%), Gaps = 14/262 (5%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESRKHT 129 LI + + + S ++S + + K + ITT +R E + Sbjct: 53 LIDNFIAAKKVEGCSDKSISYYKSTINNALVKI-KKEVVHITTDDLRGYLNQYQEESGAS 111 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + + F W + Y+ +P + + K +T E ++Q + Sbjct: 112 KVTVDNIRRILSSFFSWLEEENYIVKSPVRRIHKVKVGKTVKETYTDEALEQMRDHC-SN 170 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLAMT 248 + + L +G+R + R + I T K V L Sbjct: 171 IRDLALIDLLASTGMRVGELVRLNKNDIDYQNRECIVTGKGDKQRKVYFDARTKIHLQKY 230 Query: 249 PIGKETFFINNDKQKMNAT------QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301 + ++ I + + + K H R+ AT++ D G Sbjct: 231 VNSRTDTNDALFVSLLSPNNRLEISGVEIRLRRLGRELNIPKVHPHKFRRTLATMAIDKG 290 Query: 302 ATAHELMATYGWKTVDQAETYT 323 ++ G +++D Y Sbjct: 291 MPIEQVQHLLGHQSLDTTLQYA 312 >gi|198282468|ref|YP_002218789.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|198282805|ref|YP_002219126.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|198284132|ref|YP_002220453.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666115|ref|YP_002425003.1| site-specific recombinase, phage integrase family [Acidithiobacillus ferrooxidans ATCC 23270] gi|218666952|ref|YP_002425321.1| site-specific recombinase, phage integrase family [Acidithiobacillus ferrooxidans ATCC 23270] gi|218667875|ref|YP_002426786.1| site-specific recombinase, phage integrase family [Acidithiobacillus ferrooxidans ATCC 23270] gi|198246989|gb|ACH82582.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|198247326|gb|ACH82919.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|198248653|gb|ACH84246.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518328|gb|ACK78914.1| site-specific recombinase, phage integrase family [Acidithiobacillus ferrooxidans ATCC 23270] gi|218519165|gb|ACK79751.1| site-specific recombinase, phage integrase family [Acidithiobacillus ferrooxidans ATCC 23270] gi|218520088|gb|ACK80674.1| site-specific recombinase, phage integrase family [Acidithiobacillus ferrooxidans ATCC 23270] Length = 332 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 41/288 (14%), Positives = 85/288 (29%), Gaps = 33/288 (11%) Query: 71 LKWLISEYRKS--AHWGSLAVNSRISFESYFDQIIRKSG---DFDYRKIT---------T 116 L I + +L++N++ S+ + + ++T Sbjct: 7 LGPWIRRFLLEYLVRERNLSINTQRSYRDMLSLFLPHVSKQLNKSVDRLTVSDLSADLIR 66 Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + + ESR ++ Q L + L ++ I C + K T Sbjct: 67 QFLSDIEESRHCLAATRNQRLGGLHALARFIGENSPEHIEWCSQIRLIPFKKTAYPGITY 126 Query: 177 EDMQQFK-------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229 + + +G + FL +G R S++ + + + Sbjct: 127 LEKPEMDALLESPDRQTPQGQRDYALLLFLYNTGARASEAADLRIVDVDWHAQCAHIIGK 186 Query: 230 GTIITVELPDG----FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 G ++ LA + F+N + Q + + A +A V Sbjct: 187 GNKRRTCPLWPTTLDQLRALATQRGLDQRVFLNRNGQPITRFGIHTMVERHAARACVQVP 246 Query: 285 -------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 S H +R +AT AG + + A G ++ Y + Sbjct: 247 SMSTKQVSPHVIRHSTATHLLRAGVDINTVRAWLGHVSLTTTNIYAET 294 >gi|189465362|ref|ZP_03014147.1| hypothetical protein BACINT_01711 [Bacteroides intestinalis DSM 17393] gi|189437636|gb|EDV06621.1| hypothetical protein BACINT_01711 [Bacteroides intestinalis DSM 17393] Length = 407 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 46/343 (13%), Positives = 88/343 (25%), Gaps = 32/343 (9%) Query: 23 YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY-INSPRKKPTTLKWLISEYRKS 81 Y K R + + + + Y S Sbjct: 74 YLIDKPRTPAERQRNKETLELATKIRAEREQEFKESMLGYRLKKDRTVNFLDYFQAYINS 133 Query: 82 AHWGSLAVNSRISFES---YFDQIIRKSGD--------FDYRKITTKHIRSGVESRKHT- 129 ++ + + IT + + V + Sbjct: 134 Y--------TKKDIRMVQIALSRFKDFLKEQYPMNEFSIKPELITKEMMEQFVAYLQSRS 185 Query: 130 -PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187 A + + ++A+ + + +PC SV + + Q + Sbjct: 186 VGEGAKSIYQRFKKVIRYAIDHDVMLKDPCKSVTCKVDSQMLRKDVLSPEEIQKLAACHY 245 Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL- 244 E R AF F LY GLR D +++ +K +++ T + L Sbjct: 246 DNENPNVRRAFIFCLYCGLRFCDVKDLTYKNVDYANRLLKFEQSKTKGHSASSGVVIPLN 305 Query: 245 --LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 L K +AG++K S H R A + Sbjct: 306 DGLLSIIGEAPADKNCLIFDLPTYESCCKSVKRWVKRAGIDKHISWHCARHSFAVNILNN 365 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343 GA + + G + E YT+ D +L + + + Sbjct: 366 GANIKTVASLLGHSGLKHTEKYTRAVD--KLKEEAINSLPELK 406 >gi|153955558|ref|YP_001396323.1| integrase-related protein [Clostridium kluyveri DSM 555] gi|219855951|ref|YP_002473073.1| hypothetical protein CKR_2608 [Clostridium kluyveri NBRC 12016] gi|146348416|gb|EDK34952.1| Integrase-related protein [Clostridium kluyveri DSM 555] gi|219569675|dbj|BAH07659.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 416 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 43/367 (11%), Positives = 103/367 (28%), Gaps = 66/367 (17%) Query: 44 IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQI 102 + + E T + I ++ K LA + ++ +I Sbjct: 44 LEEANKQWVLFKDEIEKGIYLDSGKITFEEFIKKWLKDYAEAELAPKTLYRYKELLYTRI 103 Query: 103 IRKSGDFDYRKITTKHIRSGVESRKH------------TPSSAIQFLTSMRVLFKWAVRQ 150 I G K+ HI + + + + + + + A++ Sbjct: 104 IPALGHIKLNKLQPTHITEFYSNLREDGIRNDGKPGGLSERTILHHHRLISSILATAIQW 163 Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-QPRLAFEFLLYSGLRCSDS 209 ++ NP L ++ PK + + R + E+ + + +Y G+R + Sbjct: 164 GFILNNPALRLKAPKVEKKEARHFNIEETAYVLQLIENEPIKYKTMITLAIYGGMREGEL 223 Query: 210 CRAGVQHLQNNIFSIKTQKTGTII------------------------------TVELPD 239 + + +IK K+ + + Sbjct: 224 TALTWSDINFDDCTIKINKSLQHLPGRDTFIKSTKTETTRLISIPISVMTLLKEYKRWQN 283 Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG------------------ 281 L + F D + + + S WF K Sbjct: 284 TEKLKLGNLWHDSDALFTATDGKSIFPSTISKWFLKFIRKHNESIINDDKIPPKDKSKYL 343 Query: 282 -VNKSAHGVRKFSATISADAGATAHELMATYGWK-TVDQAETYTKGADRIRLGIKNSRRI 339 + HG+R SAT+ + G + G T + Y+ + ++ + ++ Sbjct: 344 LKEVNFHGLRHTSATLLINQGVDITTVSKRLGHARTSTTTDIYSHSLQ--KADVEAADKL 401 Query: 340 SSVVDSD 346 ++ +++ Sbjct: 402 ENLFNNE 408 >gi|229826012|ref|ZP_04452081.1| hypothetical protein GCWU000182_01376 [Abiotrophia defectiva ATCC 49176] gi|229789754|gb|EEP25868.1| hypothetical protein GCWU000182_01376 [Abiotrophia defectiva ATCC 49176] Length = 331 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 33/264 (12%), Positives = 83/264 (31%), Gaps = 14/264 (5%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRK 127 + +S + + + + + + ++ K+ + RKITT+ +R + Sbjct: 54 EDFLSMFLSAKKIEGCSERTIKFYRTTIKHLLSKT-KTNVRKITTEEMRKYLSDYQKWNN 112 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + + ++ F W ++Y+ +P + + K KT + E +++ Sbjct: 113 CSNVTIDNVRRNISSFFSWLEEEDYILKSPMKRIHKIKTKTVVKSTISDEGIEK-LRDNC 171 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLA 246 + + + L +G+R + + + I K V L Sbjct: 172 KEKRDLAIIDLLYSTGIRVGELVNLNIDDIDFEGRECIVYGKGDKERRVYFDAKAKVHLK 231 Query: 247 MTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299 + + ++ + I + + + H R+ AT + D Sbjct: 232 EYVDTRSDTNSALFVTLDAPYDRLKISGVEIRLRELGRSLNIERIHPHKFRRSMATRAID 291 Query: 300 AGATAHELMATYGWKTVDQAETYT 323 G ++ G +D Y Sbjct: 292 KGMPIEQVQKILGHSQIDTTMQYA 315 >gi|229096643|ref|ZP_04227614.1| Integrase/recombinase [Bacillus cereus Rock3-29] gi|228686849|gb|EEL40756.1| Integrase/recombinase [Bacillus cereus Rock3-29] Length = 305 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 32/282 (11%), Positives = 79/282 (28%), Gaps = 27/282 (9%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHI----RSG 122 L+++I +Y + LA + S+ ++ + IT + I Sbjct: 4 LRFMIKDYLEDKELSGLAPRTIQSYGDTLNEFSLWLTTEKEIINIEDITPQVIKSYLLYC 63 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQ----------EYVAINPCLSVERPKRKTEGIR 172 + R + + L ++ F++ + + + + + Sbjct: 64 SKERGNAVVTRNGKLQHLKTFFRYLEDEDVIEIRSNPTNKIKPAKTDKTIKVYSDEQIKQ 123 Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KTGT 231 + + + L +G+R + + +I K Sbjct: 124 MLRYYRRMRSRENTLYSYRGHTVIVVLAGTGIRLGELVSMRWDSVDLLNKTITIFGKNRK 183 Query: 232 IITVELPDGFMKLLAMTPIGKETFF--------INNDKQKMNATQFSIWFKAKATKAGVN 283 ++ L D + L + E ++ ++ + + F + + G Sbjct: 184 SLSTPLTDKVARELYEWRLFCEKYYIKLPAHVFNDHRGNPLTVNAVKLMFTRLSVRMGFK 243 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 +AH R A+ AG + L + E Y Sbjct: 244 TTAHMFRHTYASNCLRAGMDIYTLSKLMHHSQIRTTEVYLHA 285 >gi|254501363|ref|ZP_05113514.1| site-specific recombinase, phage integrase family protein [Labrenzia alexandrii DFL-11] gi|222437434|gb|EEE44113.1| site-specific recombinase, phage integrase family protein [Labrenzia alexandrii DFL-11] Length = 362 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 59/353 (16%), Positives = 127/353 (35%), Gaps = 30/353 (8%) Query: 10 FVTKERTRHGKII-YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 + + R G++ YY+ + R++ P F+ + +A+ + Sbjct: 9 NIIRRRLATGEVRTYYYHRATNTRLQ-GEPGSPEFLSSIAAAVEQCRQR---------DA 58 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGV 123 TL LI E++++A W LA ++ + F + G Y + I+ Sbjct: 59 GTLGGLIREFQQTAKWRRLAETTQNEYRRIFKFWEDQYGTCPYPALEDKAFRRAVIKWHD 118 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + P A +T + + WA R + N ER + + W E ++ F Sbjct: 119 AFSEAKPREADNRVTVLARVLSWATRDGPLKRNVLDGFERAYQSDRSDKIWLPEHVEAFM 178 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------ITVEL 237 + + +LA L++G R D + + S++ K+ +T++ Sbjct: 179 AV--ASPEMKLAMVLALHTGQRRGDLLQLNWNNYDGERISLRQGKSRRGKIEGRLVTIKC 236 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATI 296 + L P + F++ ++ +AG+ + H +R + T+ Sbjct: 237 TRALKETLDHLPKRSTLILTTKTGKAFKKRYFALQWEKTCREAGIEDLHFHDIRGTTVTM 296 Query: 297 SADAGATAHELMATYGW---KTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346 AG E+++ G + D + Y A + + +V+++D Sbjct: 297 LFQAGCNLGEIVSITGHCLRRAQDILDKY--LARTSTMADNAIAKFENVLETD 347 >gi|327399861|ref|YP_004346892.1| site-specific recombinase, phage integrase family protein [Lactobacillus amylovorus GRL 1112] gi|327399877|ref|YP_004346908.1| site-specific recombinase, phage integrase family protein [Lactobacillus amylovorus GRL 1112] gi|327182531|gb|AEA32966.1| site-specific recombinase, phage integrase family protein [Lactobacillus amylovorus GRL 1112] gi|327182547|gb|AEA32982.1| site-specific recombinase, phage integrase family protein [Lactobacillus amylovorus GRL 1112] Length = 284 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 39/266 (14%), Positives = 85/266 (31%), Gaps = 12/266 (4%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESR--- 126 + LI E+ + A + + +E + ++ + +E + Sbjct: 7 EKLIDEFIEDLRLQGRAEGTLLEYEMRLKEFAEFFQLKALALDQVKKSDLTEFMEQKLSN 66 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK--TEGIRPWTKEDMQQFKS 184 S+ L++ RV WAV + Y++ + PK R + Sbjct: 67 CLKVSTIRGKLSTFRVFCLWAVNKNYLSEVIISPQDYPKNTNVKRIRRLSDENLTIFKHY 126 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDG 240 + R AF L+ SG R +++ + + + I+ K G+ + + D Sbjct: 127 IDTLQPNARAAFYLLIGSGCRVAEAANLRAEDVTLRGNSVYIDIRNAKWGSDRNIPIVDA 186 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADA 300 + + +++ + A G+N H +R A + + Sbjct: 187 DAAKIVWKYRTEVEVDNRPLF-RLSKRTLQNYATNFAKSTGINFYCHLLRHTFAGLLTEK 245 Query: 301 GATAHELMATYGWKTVDQAETYTKGA 326 G + G K++ Y + A Sbjct: 246 GVPLTTVQYLLGHKSLGMTAHYAQSA 271 >gi|188590854|ref|YP_001795454.1| site-specific tyrosine recombinase xerc [Cupriavidus taiwanensis LMG 19424] gi|170937748|emb|CAP62732.1| site-specific tyrosine recombinase [Cupriavidus taiwanensis LMG 19424] Length = 349 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 46/299 (15%), Positives = 94/299 (31%), Gaps = 41/299 (13%) Query: 74 LISEYRKSAH-WGSLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVESRKH 128 L++ Y LA ++ + + + + T HIR+ Sbjct: 18 LVTRYLDWLRGSRKLAEHTLSGYARELRVLQAHAAQHAPGVALLALQTHHIRNFAARLHA 77 Query: 129 TP---SSAIQFLTSMRVLFKWAVRQEY-VAINPCLSVERPKRKTEGIRPWTKEDMQ---- 180 +S + L++ R + WA R + V++NP V P+ + + E Sbjct: 78 AGLVGTSIGRALSAWRGFYLWAARHGHGVSVNPVDGVRAPRSGHALPKALSVEHAVALVA 137 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----------- 229 +E + + +E SGLR S+ + +++ + + + Sbjct: 138 HPAGTDAEALRDQAVYELFYSSGLRLSELVQLDLRYAEADGYRSSGWLDLAGAEVTVTGK 197 Query: 230 -GTIITVELPDGFMKLLAMT-------------PIGKETFFINNDKQKMNATQFSIWFKA 275 TV + + L P F+ ++++ + K Sbjct: 198 GSRRRTVPVGGRAIAALQAWLAVRDGLLRPGAAPEDAHALFLGPRGRRLSMRTVQLRLKQ 257 Query: 276 KATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 +A +AGV H +R AT + + G ++ + YT D L Sbjct: 258 QALRAGVPADVHPHMLRHSFATHMLQSSGDLRAVQEMLGHASISTTQVYT-ALDFQHLA 315 >gi|148243976|ref|YP_001220215.1| phage integrase family protein [Acidiphilium cryptum JF-5] gi|146400539|gb|ABQ29073.1| phage integrase family protein [Acidiphilium cryptum JF-5] Length = 302 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 35/294 (11%), Positives = 87/294 (29%), Gaps = 25/294 (8%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS-- 131 L + + + ++ + G T + +R ++ Sbjct: 13 LRQRLIDDMNMRRFSRETHRNYLRDVGRFATFLGRSP-DTATAEDLRRFQIEQRDAGVPT 71 Query: 132 -SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 + ++++R F + + + + R +++++ + + + Sbjct: 72 PTMNSIVSALRFFFTQTIDRPDL----ARKLIRTPHPRNLPVVLSRDEVARLLNATTC-L 126 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250 + + A +G+R ++ V + + I+ ++ L+ + Sbjct: 127 KHQAALSVAYGAGMRVAEVAALKVSDIDSERMLIRVERGKGGRYRNAILPADLLILLREW 186 Query: 251 GKETFFINNDK------------QKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATI 296 K + ++ Q A A + K H +R AT Sbjct: 187 WKIGHQQGVMHAQGWLFPGQQVTKPISTRQLHRVVVEAARAAEITKRVGPHTLRHSFATH 246 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSRRIS-SVVDSDDP 348 + G + A G ++ YTK A R +R I R+ D + P Sbjct: 247 LLEDGVDIRVIQALLGHSHLNTTALYTKVATRTVRAVISPLDRLGIVTADQERP 300 >gi|330910760|gb|EGH39270.1| phage integrase [Escherichia coli AA86] Length = 357 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 62/345 (17%), Positives = 110/345 (31%), Gaps = 23/345 (6%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63 LPP + R+ Y G+ L A + + + Sbjct: 9 RRDLPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELLSDSGRKSLI 65 Query: 64 PRKK---PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 R K TL + Y + + + + S I RK D I+TK + Sbjct: 66 DRIKGGDAITLHVWLDRYETILTERGIRPKTLLDYASKIRAIRRKLPDKPLTDISTKEVA 125 Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + + + +SA +++ +F+ A+ + +VA NP + K + R E Sbjct: 126 AMINTYVAEGKAASAKLIRSTLVDVFREAIAEGHVATNPVTATRTAKSEVRRSRLTANEY 185 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 ++ + + RLA + + +G R D CR + +N IK KTG + + L Sbjct: 186 VEIYHAAKPLPIWLRLAMDLAVVTGQRVGDLCRMKWSDINDNHLHIKQSKTGAKLAIPLT 245 Query: 239 DGFMKL---------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NK 284 L ET + ++ S +F +G+ Sbjct: 246 LTIDALNISLADTLQKCREASSSETIIASKHHDPLSPKTVSKYFTKARNASGLSFDGNPP 305 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + H +R SA G K+ A Y R Sbjct: 306 TFHELRSLSA-RLYRNQIGDKFAQRLLGHKSDSMAARYRDSRGRE 349 >gi|291544906|emb|CBL18015.1| Site-specific recombinase XerD [Ruminococcus sp. 18P13] Length = 331 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 40/304 (13%), Positives = 94/304 (30%), Gaps = 41/304 (13%) Query: 73 WLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS------------GDFDYRKITTKHI 119 ++++Y + + + ++ D D R + + Sbjct: 11 EILNDYLIFLSIVKGRSPRTVAEYNLDLRLFLKYIKFMKTEHNQPAVEDMDIRDVDITLL 70 Query: 120 RSG------------VESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKR 166 R + R++ + + ++++ F + + NP +E P Sbjct: 71 RQVTLQDIYQFEYYLQDDRQNRDRARSRKTSAVKGFFSYLTYNMTLLEKNPAEHLELPGV 130 Query: 167 KTEGIRPWTKEDMQQFKSFWSEGS--QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 K + + E+ + S + L G+R S+ VQ + + Sbjct: 131 KHSLPKFLSLEESLRMLSSVESDHPQRDYCILVLFLNCGIRLSELVGINVQDVDMYERRL 190 Query: 225 KT-QKTGTIITVELPDGFMKLLAMTPIGKETFFINND-------KQKMNATQFSIWFKAK 276 + K + L D + + ++ + ++++ + ++ Sbjct: 191 RILGKGNKERMIYLNDACLSAITEYLQTRKNPPTEPNALFLSRNNRRISRRRVQQIVESV 250 Query: 277 ATKA---GVNKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADRIRL- 331 A G S H +R +AT+ G L G K++ E YT +D R Sbjct: 251 LKNADLGGKGLSTHKLRHTAATLMYQHGNVDTLTLKEILGHKSIVTTEIYTHLSDEQRQD 310 Query: 332 GIKN 335 I++ Sbjct: 311 AIEH 314 >gi|319649469|ref|ZP_08003625.1| hypothetical protein HMPREF1013_00229 [Bacillus sp. 2_A_57_CT2] gi|317398631|gb|EFV79313.1| hypothetical protein HMPREF1013_00229 [Bacillus sp. 2_A_57_CT2] Length = 373 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 48/359 (13%), Positives = 111/359 (30%), Gaps = 42/359 (11%) Query: 10 FVTKERTRHGKIIYYFRKGH---GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 ++ R R Y + G+ T A + A +S Sbjct: 3 YMASFRKRGNSWQYRIKYIDPATGKPKEKSKSGFRTKKEAQIEAAEVEKKFYLRQHSVIA 62 Query: 67 KPTT-LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124 T LK ++E+ + A + + Y + II G++ ++T + + Sbjct: 63 NSETILKDWLTEWLEIYGAQ-CAERTLFNRFWYINNHIIPSLGNYKMNQLTRIEYQKFIN 121 Query: 125 SRKHTPSSAIQFLTSMRVLF----KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + A + + ++ +F AV E V N + + E I ++++++ Sbjct: 122 TLVEKGY-ARKTIQTIHSIFCTAINKAVELEMVTHNKYQGISIKVEEEEKINYLSRDEVE 180 Query: 181 QFKSFWSEGSQPRLAFEFLLY-SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------- 232 F + +L +G+R + + + +I KT + Sbjct: 181 IFMDAAKKSPYHHYIIASILLRTGMRKGEMLALKWEDIDFENKTISITKTRSDNGVKKPK 240 Query: 233 -----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT--------------QFSIWF 273 T+ + + + L + ++ + + + + Sbjct: 241 TKSSNRTIGIDNTLIADLKQYQLWQKKNKMKHGADYHKSEFLVRCPNGKEIGEYGVNKTI 300 Query: 274 KAKATKAG---VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADR 328 + KA + S HG+R A + ++GA + G T++ Y + Sbjct: 301 DSILKKANTNLPHISPHGLRHTHAIMLLESGADLKFVSERLGHSTINMTADVYVHITKK 359 >gi|206602617|gb|EDZ39098.1| Putative phage integrase [Leptospirillum sp. Group II '5-way CG'] Length = 346 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 43/334 (12%), Positives = 102/334 (30%), Gaps = 31/334 (9%) Query: 17 RHGKIIYYFR-KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75 + G + + + + G ++ + + + + +++ + TTL + Sbjct: 6 KRGDLQWRVKIRRRGFPLQTRTFNTKAEAETWARLIETEMDRGSFVDRSEAENTTLSDAL 65 Query: 76 SEYRKSAHWGSLAVNSRISFE--SYFDQIIRK-SGDFDYRKITTKHIRSGVESR--KHTP 130 Y ++ + + S++ + + G +I I + R K Sbjct: 66 DRY-----AREISPHKKGSYQELCRIENLKTHPLGKRFIAQIRGSDIALYRDERLKKVAA 120 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG---IRPWTKEDMQQFKSFWS 187 ++ L + LF+ A ++ + K R E+ + +S Sbjct: 121 ATVRLELAIISHLFEIARKEWGMESLSNPVRIVNLPKKSESRDRRLLYGEEEKLLESCDI 180 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--IKTQKTGTIITVELPDGFMKLL 245 G L +G+R + +H+ + I K G +V L +++L Sbjct: 181 YGGDLPAIVRIALETGMRRGEIVGMTWEHVDLKKNTVLIPKTKNGEKRSVPLSKKAVEIL 240 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAK-------ATKAGV--------NKSAHGVR 290 ++ T F + G+ + + H +R Sbjct: 241 KGLSRRIGGRVWEITEEHSVTTAFRRAISRARATYEKECQEKGIKQDPSFLVDLTFHDLR 300 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + + + G ++ A G KT+ YT Sbjct: 301 HEATSRFFEKGLNPMQVAAITGHKTLQMLRRYTH 334 >gi|134096115|ref|YP_001101190.1| tyrosine recombinase xerC [Herminiimonas arsenicoxydans] Length = 296 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 49/282 (17%), Positives = 91/282 (32%), Gaps = 38/282 (13%) Query: 88 AVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSM 140 + + S+ +++ + G+ I+ IR S + L++ Sbjct: 2 SPLTITSYRRDLLELLALATASDGNAALSAISHFQIRKFAAQLHAKGLNARSIARKLSAW 61 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-------- 192 R F W Q VA NP ++ PKR + +D + S S G Sbjct: 62 RGFFTWLSEQNAVASNPVDGIKAPKRNKPLPKALAADDAVRLVSSNSPGKNADATMQLCN 121 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG------------TIITVELPDG 240 R FE L SGLR S+ +++ Q N ++ + + + Sbjct: 122 RAMFELLYSSGLRASELVGLDLKYAQENRYTSAGWIDFDAHEAMVTGKGSKMRSAPIGQP 181 Query: 241 FMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVR 290 + L + F++ +++A + KA A G+ H +R Sbjct: 182 AIDALKAWLAVRDTLLKLDPHPLFLSERGTRISARVLQLRLKAHAQAVGLPMDVHPHVLR 241 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 A+ + + G ++ + YT D RL Sbjct: 242 HSFASHVLQSSGDLRAVQEMLGHASISATQIYT-SLDFQRLA 282 >gi|215486111|ref|YP_002328542.1| predicted integrase [Escherichia coli O127:H6 str. E2348/69] gi|312968948|ref|ZP_07783155.1| integrase [Escherichia coli 2362-75] gi|215264183|emb|CAS08527.1| predicted integrase [Escherichia coli O127:H6 str. E2348/69] gi|312286350|gb|EFR14263.1| integrase [Escherichia coli 2362-75] Length = 357 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 62/345 (17%), Positives = 110/345 (31%), Gaps = 23/345 (6%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63 LPP + R+ Y G+ L A + + + Sbjct: 9 RRDLPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELLSDSGRKSLI 65 Query: 64 PRKK---PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 R K TL + Y + + + + S I RK D I+TK + Sbjct: 66 DRIKGGDAITLHVWLDRYETILTERGIRPKTLLDYASKIRAIRRKLPDKPLTDISTKEVA 125 Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + + + +SA +++ +F+ A+ + +VA NP + K + R E Sbjct: 126 AMLNTYVAEGKAASAKLIRSTLVDVFREAIAEGHVATNPVTATRTAKSEVRRSRLTANEY 185 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 ++ + + RLA + + +G R D CR + +N IK KTG + + L Sbjct: 186 VEIYHAAEPLPIWLRLAMDLAVVTGQRVGDLCRMKWSDINDNHLHIKQSKTGAKLAIPLT 245 Query: 239 DGFMKL---------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NK 284 L ET + ++ S +F +G+ Sbjct: 246 LTIDALNISLADTLQKCREASSSETIIASKHHDPLSPKTVSKYFTKARNASGLSFDGNPP 305 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + H +R SA G K+ A Y R Sbjct: 306 TFHELRSLSA-RLYRNQIGDKFAQRLLGHKSDSMAARYRDSRGRE 349 >gi|213622284|ref|ZP_03375067.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 234 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 37/221 (16%), Positives = 73/221 (33%), Gaps = 14/221 (6%) Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + P+S L+++R F W V Q + NP V PK + +D+ + Sbjct: 1 RKGLGPASLALRLSALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKNIDVDDVNRLLD 60 Query: 185 FWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG 240 + R E + +GLR S+ ++HL + K + + Sbjct: 61 IDLNDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLPIGRN 120 Query: 241 FMKLLAMTPIGKETFFINND-------KQKMNATQFSIWFKAKATKAGV--NKSAHGVRK 291 + + + F + + ++++A F K G+ + H +R Sbjct: 121 AVTWIEHWLDLRGLFASDEEALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRH 180 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 AT ++ + G + + YT D L Sbjct: 181 SFATHMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 220 >gi|82750103|ref|YP_415844.1| integrase [Staphylococcus aureus RF122] gi|11094395|gb|AAG29618.1| integrase-like protein [Staphylococcus aureus] gi|82655634|emb|CAI80030.1| probable integrase [Staphylococcus aureus RF122] gi|298693728|gb|ADI96950.1| probable integrase [Staphylococcus aureus subsp. aureus ED133] Length = 378 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 46/385 (11%), Positives = 110/385 (28%), Gaps = 60/385 (15%) Query: 11 VTKERTRHGKIIYYF--------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62 + K + + G Y F G +R + L + ++N Sbjct: 2 IKKYKKKDGSTAYMFVAYLGTDPITGKQKRTTRRGFKTEREAKIAEAKLQTEVSQNGFLN 61 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKH 118 + TT K + + + ++ ++ ++ + D +KIT + Sbjct: 62 NDI---TTFKEVYELWLEQYQ-NTVREST---YQRVLTLFDTAILEHFQDVPIKKITVPY 114 Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG----IRPW 174 + + S +FK+AV + + NP + P++K + + Sbjct: 115 CQKVINKWNKKYSDIKAIRIYTSNVFKYAVSLKIIVDNPFAHTKAPRKKEAQQDASTKYY 174 Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-- 232 + ++++QF +F + F L ++G R + + +I KT Sbjct: 175 SSDELKQFLTFVEDDPLYYAIFRTLAFTGFRRGELMALTWNDIDFTKQTISINKTCARGA 234 Query: 233 ---------------------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMN 265 + ++ L + + N Sbjct: 235 NYKLVIQEPKTKSSHRTISIDDKTASVLKSWRTHQRVESLKYGHNTSDKHQHVFTTVRDN 294 Query: 266 ATQFSIWFKAKATKAGVNKSA-----HGVRKFSATISADAGATAHELMATYGWKTVDQAE 320 + S HG R ++ +AG + E+ G + Sbjct: 295 KPLYPEHCNKALDLICEKNSFKRIKVHGFRHTHCSLLFEAGLSIQEVQDRLGHGDIKTTM 354 Query: 321 -TYTKGADRIRLGIKNSRRISSVVD 344 Y ++ R + + + + ++ Sbjct: 355 DIYAHVTEKQR--DQVADKFAKYIN 377 >gi|145594467|ref|YP_001158764.1| site-specific tyrosine recombinase XerD [Salinispora tropica CNB-440] gi|145303804|gb|ABP54386.1| tyrosine recombinase XerD [Salinispora tropica CNB-440] Length = 325 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 48/304 (15%), Positives = 95/304 (31%), Gaps = 40/304 (13%) Query: 60 YINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKIT 115 + L+ + Y LA N+ S+ + G D + Sbjct: 2 TAEAEPDPAPALRRAVRGYLDHLAVERGLAANTLASYRRDLAHYLDTLASIGVTDLASVA 61 Query: 116 TKHIRSGVESRKHTPSSAI--------QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167 + + + + + ++++R L ++A+R+ +P V P Sbjct: 62 PGQVEAHLARLRVGNEGRRPLAASSAARAVSAVRGLHRFALREGLTGADPSRDVRPPAPP 121 Query: 168 TEGIRPWTKEDMQQFKSFW----------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217 R +D+ + G + R EFL +G R S++ A V L Sbjct: 122 RRLPRALPVDDVIRLLEAVGPVSAAGGQAPLGLRDRALLEFLYGTGARISEAVGAAVDDL 181 Query: 218 QNNIFSIKTQKTGTI-ITVELPDGFMKLLAMTPIG-----------KETFFINNDKQKMN 265 + ++ + G V + + L + F+N+ ++ Sbjct: 182 DLDAGAVLLRGKGGRNRLVPIGGYAVAALHAYLVRARPGLAAAGGGTPRVFLNSRGGPLS 241 Query: 266 ATQFSIWFKAKATKAGVN------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 + A +AG++ S H +R AT D GA + G +V Sbjct: 242 RQGAWTILRNAARRAGLSDVGPQAVSPHTLRHSYATHLLDGGADVRVVQELLGHASVTTT 301 Query: 320 ETYT 323 + YT Sbjct: 302 QVYT 305 >gi|332090863|gb|EGI95955.1| integrase [Shigella boydii 5216-82] Length = 323 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 46/304 (15%), Positives = 91/304 (29%), Gaps = 18/304 (5%) Query: 28 GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87 GRRIR + Y + E+ + + L LI + K Sbjct: 19 RKGRRIR-KKFKTKSDAVLYERWVLAQQHNNEWKGNSIDRRP-LSVLIDLWWKYHGQLMR 76 Query: 88 A-VNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMRVL 143 + N+ + ++ D K+ T + R + PS+ + + ++ + Sbjct: 77 SGHNTHLK----LLRLSEAMDDPCVHKLNTTMLTELRVSRIEQGIQPSTINREIGALSAM 132 Query: 144 FK-WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202 F ++ NP ++ K + +K + Q +E RLA E LL + Sbjct: 133 FTALISSGHFLNDNPVQGLKGMKVNEREMGYLSKSESVQLLDALAENPDERLAVEILLST 192 Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262 G R + + + + + K TV + + + + ++ Sbjct: 193 GARWGEVEALEQRRVLHCRITFSKTKNSKNRTVPISESLFEKIKKRGGKLVFPTLDYPL- 251 Query: 263 KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 K A ++ H +R A+ G L G + Y Sbjct: 252 ------VRDVIKTVAPDIPDGQAVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIY 305 Query: 323 TKGA 326 A Sbjct: 306 AHLA 309 >gi|312621873|ref|YP_004023486.1| integrase family protein [Caldicellulosiruptor kronotskyensis 2002] gi|312202340|gb|ADQ45667.1| integrase family protein [Caldicellulosiruptor kronotskyensis 2002] Length = 310 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 33/271 (12%), Positives = 80/271 (29%), Gaps = 14/271 (5%) Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127 + + ++ + + +E + + + + K S+ Sbjct: 8 KMDWREALQQFLFYKRAEGRSELTLRDYEYHVTHFFDLYPNCFHDEQQLKKCLYEYLSQP 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ---FKS 184 P++ LT ++ FKW V + + NP + + K + + T+ + Sbjct: 68 IKPATYNLRLTYLKAFFKWCVEENILKSNPLEGLPKKKAEGRIVNIDTEILEKLLKLPDK 127 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-----------II 233 G + L +G+R ++ ++H + + Sbjct: 128 NTFCGLRDYALILLTLDTGIRPKEAFSLLIEHFDFKTLQVFIPSDAAKTRVSRVLPILPV 187 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFS 293 T + + K F + + ++ + + K GV + +R Sbjct: 188 TANAVKKLIAVRHPEWDEKVPVFCTVTGRPLTRDIWNDRMEMYSKKLGVKIRPYDLRHTF 247 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324 A + G L T G T++ + Y Sbjct: 248 ALLYLKNGGYELSLQKTLGHTTLEMTKRYVH 278 >gi|310779773|ref|YP_003968105.1| integrase family protein [Ilyobacter polytropus DSM 2926] gi|309749096|gb|ADO83757.1| integrase family protein [Ilyobacter polytropus DSM 2926] Length = 356 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 49/342 (14%), Positives = 110/342 (32%), Gaps = 39/342 (11%) Query: 15 RTRHGKI--IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 + ++GK +YF G +I+ T A + S + + Sbjct: 5 KDKNGKWISRFYFTNYKGEKIQKFKRGFKTKREA------QEWEREFIAKSKFEITMSFN 58 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRK---- 127 L Y + L N+ ++ +++ + + KIT IR Sbjct: 59 SLYEMYLEDLSHR-LRENTIMTKRHIIEKKVLPFFKEMEIGKITPVLIRKWQNKLIKYED 117 Query: 128 ------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP-KRKTEGIRPWTKEDMQ 180 ++ + + + +AV+ + NPC K++ + + WT E+ + Sbjct: 118 PKTNKLYSQTYIKTINNQLVAILNYAVKYHSLNENPCHKAGTIGKKQADEMDIWTVEEFE 177 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------- 232 +F S + F L ++G+R + + + +I+ K+ Sbjct: 178 KFAECLHHKSISFVGFNILFWTGIRIGELLALTINDIDLKNRTIRINKSYQRLNKEDVIT 237 Query: 233 --------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284 +++ + +L ++ +F K + KA V K Sbjct: 238 DPKTAKGNRIIKITENLANILVNYIDTLYNVETSDRLIISTKYRFHHDMKLYSEKAKVKK 297 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 H +R A++ G + + G + ++ TY+ Sbjct: 298 IRVHDLRHSHASLLIHLGVSPLAIAKRLGHEKIETTLNTYSH 339 >gi|298241379|ref|ZP_06965186.1| integrase family protein [Ktedonobacter racemifer DSM 44963] gi|297554433|gb|EFH88297.1| integrase family protein [Ktedonobacter racemifer DSM 44963] Length = 293 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 38/272 (13%), Positives = 88/272 (32%), Gaps = 17/272 (6%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG-VESRKH 128 T + ++ S N+ ++ + + F ++T I+ H Sbjct: 3 TTAETVEQFLASLRARHAPANTIKAYSHDLRHFLAAAPTF-LVEVTAPLIQEFLQGDGHH 61 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + ++ + +++ + WA+RQE V+ NP ++ + + RP E++ + S Sbjct: 62 SVATRGRRYSTLCTFYHWAIRQELVSSNPMERLDPITQPQKEPRPLAPEEVDKIFKAISP 121 Query: 189 G-SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------------II 233 + R F L +G+R ++ + K + G I Sbjct: 122 SRLRDRTLFMLLYETGVRVGEALALQYSDVTLAQDDEKIRVFGKGQRERTVMLTAAPQSI 181 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFS 293 + + + + ++ T ++ AGV + H +R Sbjct: 182 RLLRRHLKESHITSGSVFRGDPRYGGSPLPLDYTVVQKAWQKYCQAAGVQATIHQLRHSR 241 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKG 325 A+ AG + G + + Y + Sbjct: 242 ASQLIQAGVPVTTVRKQMGHRNLQSTLRYAEV 273 >gi|329888682|ref|ZP_08267280.1| phage integrase family protein [Brevundimonas diminuta ATCC 11568] gi|328847238|gb|EGF96800.1| phage integrase family protein [Brevundimonas diminuta ATCC 11568] Length = 374 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 57/338 (16%), Positives = 111/338 (32%), Gaps = 45/338 (13%) Query: 11 VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 +TK+R ++ Y++ G R+ P F+ AY +A+ K T Sbjct: 12 ITKKRADGSRVTYWYAWKGGPRLP-GSPGSPEFMAAYNAAVAERRAP---------KTDT 61 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR------KSGDFDYRKIT----TKHIR 120 L+ L Y++S + +L ++ + + D I+ G + + I Sbjct: 62 LRSLAILYKQSPEYDALGDTTKREWTRWLDVIMDDSDAPLAIGGLPFDALDDRRVKAEIL 121 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + + P A + + + W + + +A+N +++ + WT E+++ Sbjct: 122 AWRDQWADRPRKADYGIQVLSRVLSWGMDRGLLALNAAAGIKQLYTSNRADQIWTAEEIE 181 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI---------------- 224 ++ + + ++GLR D H+ + Sbjct: 182 RYAAAAKSPEVGFIVRLAC-HTGLRREDLASLCWSHVGDLAIVKATKKSRGKKTAVIPLL 240 Query: 225 --------KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK 276 + + EL D K P+ T N + + Sbjct: 241 DDTKALLEEIRAQQRRRHSELADSAAKKKRPAPVECLTVLSNTRGKPWSLDGLEHQVVDA 300 Query: 277 ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWK 314 AG+NK H R AT AG TA E+ GW+ Sbjct: 301 KAAAGINKHLHDARGTFATRLRRAGLTAAEIADILGWE 338 >gi|269961534|ref|ZP_06175897.1| tyrosine recombinase XerC [Vibrio harveyi 1DA3] gi|269833763|gb|EEZ87859.1| tyrosine recombinase XerC [Vibrio harveyi 1DA3] Length = 269 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 37/266 (13%), Positives = 84/266 (31%), Gaps = 18/266 (6%) Query: 99 FDQIIRKSGDFDYRKITTKHIRS---GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155 + + G D+ ++ +R SS L+S+R F + + + ++ Sbjct: 1 MAHHLAEMGLKDWSQVDAGWVRQLAGKGMREGMKASSLATRLSSLRSFFDFLILRGEMSA 60 Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRA 212 NP V P++K + +++ Q + + R E + +GLR ++ Sbjct: 61 NPAKGVSAPRKKRPLPKNLDVDEVNQLLEVNEDDPLAVRDRAMMELMYGAGLRLAELVSV 120 Query: 213 GVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK--------ETFFINNDKQK 263 V+ +Q ++ V + + + F++ + Sbjct: 121 DVRDVQLRSGELRVIGKGDKERKVPFSGMATEWVGKWLRVRGDLAAPGEPALFVSKLGTR 180 Query: 264 MNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321 ++ K V + S H +R AT ++ + G + + + Sbjct: 181 ISHRSVQKRMAEWGQKQSVASHISPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQI 240 Query: 322 YTKGADRIRLGIKNSRRISSVVDSDD 347 YT D L + +D Sbjct: 241 YTH-LDFQHLAQAYDQAHPRARKRND 265 >gi|119385147|ref|YP_916203.1| phage integrase family protein [Paracoccus denitrificans PD1222] gi|119374914|gb|ABL70507.1| phage integrase family protein [Paracoccus denitrificans PD1222] Length = 307 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 52/293 (17%), Positives = 94/293 (32%), Gaps = 8/293 (2%) Query: 57 KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT 116 +R P K L Y +S + L ++ ++ Y + II GD D RKI T Sbjct: 10 RRLKGREPLPTKRNFKTLRLSYVESDAFKHLKPRTKRDYQKYMEHIISIWGDLDPRKIET 69 Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW-T 175 HI ++ A + VL A ++ + + W Sbjct: 70 HHIYKLHQANADHWRQANYLVQVFVVLLNHARLIGFLKKEHGNPAKGIPLFKQPGDGWEP 129 Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 D + + +PRL +E + G R D+ + H+++ + KT + V Sbjct: 130 WPDEVRAEFEELAPPRPRLVYELSIGLGQRIGDTHKIRWDHIKDGEYDFTQGKTDKPLLV 189 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS----AHGVRK 291 L + L+ T D + + + + ++ HG+RK Sbjct: 190 PLTNRLAAYLSTVKKEGLTIVCGRDGRPADYRTVTEEMRKIKAAMKHPETQRYVTHGLRK 249 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETY---TKGADRIRLGIKNSRRISS 341 + AG + A G V+ + Y + + R R Sbjct: 250 NATIELYQAGCDDEMVKAVTGHSGVEMLKKYGGRVRQRELARRAQDARNRAEQ 302 >gi|291485998|dbj|BAI87073.1| hypothetical protein BSNT_05256 [Bacillus subtilis subsp. natto BEST195] Length = 329 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 44/310 (14%), Positives = 95/310 (30%), Gaps = 28/310 (9%) Query: 46 AYMSALTGSTPKREYINSPR--KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103 A + G +RE + + T+ + + + + + Y+ + + Sbjct: 2 AVLKRRQGVRNRRETDGIVKSFRATKTVHEALGIVCELFETENYRERTINDYRKYWSEFM 61 Query: 104 RKSGDFDYRKIT-------TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN 156 +G IT +I + + R +P + L ++ + ++ + N Sbjct: 62 EVAGIQPTDNITDITEDHLRSYISTMLNVRDLSPVTINIRLGGIKSILSRMTKRGLINEN 121 Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRA 212 P V + + + I+ T +++F + + + +AF L GLR ++ Sbjct: 122 PAKRVTKLRVDEKTIKMLTDSQVRRFFKMIDKDTFPGFRDYVAFLIALKCGLRSNELEGL 181 Query: 213 GVQHLQNNIFSIK----TQKTGTIITVELPDGFMKLLAM-------TPIGKETFFINNDK 261 + + + I K V + + + L F+N Sbjct: 182 KPEDIDFDNLVIMLPGAVNKNRKNRMVPMTEQVAEELRQLLTEMTEYFGTFTHVFVNQYG 241 Query: 262 QKMNATQFSIWFKAKATKAGVNK----SAHGVRKFSATISADAGATAHELMATYGWKTVD 317 +K+ A + K S H +R A G+ L G + Sbjct: 242 EKIAKDHLRKRAAKYGEMADLKKECRPSLHSLRHTFAINYLRNGSDIRSLQKIMGHADLA 301 Query: 318 QAETYTKGAD 327 E Y D Sbjct: 302 STEIYLDYVD 311 >gi|253573104|ref|ZP_04850494.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|256842101|ref|ZP_05547606.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|301308733|ref|ZP_07214685.1| mobilizable transposon, int protein [Bacteroides sp. 20_3] gi|251837298|gb|EES65399.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|256736417|gb|EEU49746.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|300833257|gb|EFK63875.1| mobilizable transposon, int protein [Bacteroides sp. 20_3] Length = 397 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 62/392 (15%), Positives = 117/392 (29%), Gaps = 54/392 (13%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLP-------------------YPHESTFI 44 L+ P + ++ +G Y G IR E Sbjct: 9 KLKEPVRIRFKQLANGNQSIYLDYYTGDVIRKENYVGGKRQYEFLKLYLIPEKTREDKAK 68 Query: 45 PAYMSALTGSTPKREYINSPRKK------PTTLKWLISEYRKSAHWGSL---AVNSRISF 95 AL + + + + +I Y + S ++N + Sbjct: 69 NEATLALAKAIQSKRIVELQNDAHGFQNTNKSKANVID-YLMNMRSQSKERGSLNYEKTV 127 Query: 96 ESYFDQIIRKSGD-FDYRKITTKHIRSGVESRKH----------------TPSSAIQFLT 138 + ++ GD +R I + S V+ K + +S I + Sbjct: 128 GNTIRELKLFRGDYIAFRDIDKDFLNSFVDFLKQAKKASKFGLLKAGGVLSNNSVIAYYG 187 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKT---EGIRPWTKEDMQQFKSFWSEGSQPRLA 195 +R A ++ + +NP + + T E++++ + + A Sbjct: 188 VLRTAINRAYKEGIITVNPTKEFDFASKVKAEVSRREYLTIEELKRLIGTECKYEIMKQA 247 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254 F F GLR SD + LQ + I+ K + L P E Sbjct: 248 FLFSCLCGLRVSDIRKLKWNDLQKSGERIRIEIKMQKTKEPLYLPISDEALKWLPQQNEA 307 Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYG 312 + + + + A AGV + S H R AT+ GA + + G Sbjct: 308 KGDDLIFPLTHEGTINKILQKWAKDAGVIKHISFHVARHTHATMMLTLGADLYTVSKLLG 367 Query: 313 WKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 K + + Y K D+ + + I ++ D Sbjct: 368 HKNIATTQIYAKIVDKKK--EEAISLIPNLTD 397 >gi|300776492|ref|ZP_07086350.1| mobilizable transposon [Chryseobacterium gleum ATCC 35910] gi|300502002|gb|EFK33142.1| mobilizable transposon [Chryseobacterium gleum ATCC 35910] Length = 429 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 43/299 (14%), Positives = 87/299 (29%), Gaps = 15/299 (5%) Query: 60 YINSPRKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGD-FDYRKITTK 117 K+ + K H + + + R ++ + II SGD + KI Sbjct: 120 KAELQEKQKEKFIDYCNRLLKKRHGSNNSSDSIRTNWRCLIEFIIEFSGDDLRFSKIDLS 179 Query: 118 HIRSGVESRKHTPS-----------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 P SA + + + + A Y I+ ++ Sbjct: 180 FADDFKLYLLSAPYRGKKKGILSNNSAATYFSIFKAIVSQAFIDGYFIIDLSAKIKGIGE 239 Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226 + + E++ + E + + A F +GLR D R + + IK Sbjct: 240 QESFREHLSLEELNLLVNTPCENDELKRASLFSALTGLRHCDIKRLKWKEIDVQSNRIKI 299 Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284 Q + + +++ S + AG+ K Sbjct: 300 QFRQKKTKGVEYTPISEQAIHLCGTPRLPEQLVFENLQDSSWISRPLEKWVKSAGITKHI 359 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343 + H R AT+ G + + G V + Y K D ++ + ++ + Sbjct: 360 TFHCFRHTFATLQLSLGTDIYTVSKMLGHSKVTTTQVYAKVVDELKNRAAGAIKLDENI 418 >gi|226363393|ref|YP_002781175.1| integrase [Rhodococcus opacus B4] gi|226241882|dbj|BAH52230.1| putative integrase [Rhodococcus opacus B4] Length = 368 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 55/323 (17%), Positives = 106/323 (32%), Gaps = 27/323 (8%) Query: 20 KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79 + +R + R + + + + EY+ P+ T+ + + Sbjct: 14 RWEVRYRTPERKSTRRRGFTSKRQAQDFAATVEVEKMRGEYV-PPKLGHITMGEVGPAWL 72 Query: 80 KSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSS--AIQF 136 + L ++ S E+ + + + G + + + T + I+ Sbjct: 73 ERKE-SDLKPSAYRSLETSWRVHVKPRWGTVRLSDVDLDAVERWIADLNRTKGATVVIRA 131 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196 + + AV+ + +A NP VE RK R + D + + R Sbjct: 132 YGVLAGILDSAVKGKRLARNPARGVENLPRKQRKPRVYLTHDEVAALA--DSAGEKRALV 189 Query: 197 EFLLYSGLRCSDSCRAGVQHLQ---------------NNIFSIKTQKTGTIITVELPDGF 241 L Y GLR ++ V+HL N + T K+ +V +P Sbjct: 190 LVLAYCGLRWGEAIGLRVRHLDLLRKRATVVENAVQVNMEMHVGTPKSHKSRSVPIPGFV 249 Query: 242 MKLLAMTP----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATI 296 ++ LA F + + F+ WF K+GV + + H +R A++ Sbjct: 250 VEELARQCEGKGRDDLVFPGRDGDYLKRSVSFTGWFTKAVEKSGVPRLTPHDLRHTCASL 309 Query: 297 SADAGATAHELMATYGWKTVDQA 319 S AGA L G + Sbjct: 310 SIAAGANVKSLQRMLGHASAAMT 332 >gi|222112165|ref|YP_002554429.1| tyrosine recombinase xerc [Acidovorax ebreus TPSY] gi|221731609|gb|ACM34429.1| tyrosine recombinase XerC [Acidovorax ebreus TPSY] Length = 323 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 46/295 (15%), Positives = 82/295 (27%), Gaps = 40/295 (13%) Query: 77 EYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTPSS- 132 +Y + LA + + ++ + D ++T+ HIR V S Sbjct: 16 QYLEHVRVEKRLAARTLTLYTLDLQRLAAMAAGVDLPLLRLTSAHIRRFVAQMHAGGRSG 75 Query: 133 --AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 L+ R + WA RQ V NP V PK + ++ + G+ Sbjct: 76 RGIALILSGWRGFYTWAARQGLVPHNPVQDVRAPKAPKPLPKALPVDEAVRLAEHQETGA 135 Query: 191 QPRL------AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------GTI 232 P L E L GLR + V + Sbjct: 136 DPWLEARDAAIVELLYGCGLRVGELVGLDVAPSPAAHQQGRGWVDLQAGEAHVFGKGSKR 195 Query: 233 ITVELPDGFMKLLAMTPIGKETFF-------------INNDKQKMNATQFSIWFKAKATK 279 +V + L + F I ++ A + + ++ Sbjct: 196 RSVPVGRAAAAALQAWLAQRALPFGAAGAARLEPALFIGRRGARLTAQSVWLRLRQRSQV 255 Query: 280 AGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 AG+ H +R A+ + + G + + YT+ D L Sbjct: 256 AGLTTPVHPHMLRHSFASHLLQSSGDLRAVQELLGHANITTTQVYTR-LDFQHLA 309 >gi|149917823|ref|ZP_01906318.1| site-specific recombinase, phage integrase family protein [Plesiocystis pacifica SIR-1] gi|149821343|gb|EDM80745.1| site-specific recombinase, phage integrase family protein [Plesiocystis pacifica SIR-1] Length = 346 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 36/296 (12%), Positives = 85/296 (28%), Gaps = 43/296 (14%) Query: 72 KWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVES 125 + ++ + L+ N+ ++ + I R + + +R+ + Sbjct: 2 REALASFLVHLDKERRLSPNTCRAYARDIEGFIDNVEARRDRPAKLRDLRLREVRAYLAE 61 Query: 126 RKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 S+ + L+++R ++ R+ ++A N + RPK + ED+ + Sbjct: 62 LHGKRAASTVGRKLSALRTFAEYCRREGWIAENEVALMRRPKLGRKLPVALPVEDLTEMI 121 Query: 184 SFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI------------FSIKTQ 227 G + R E L +GLR S++ + L+ + Sbjct: 122 DGEQRPGAVGLRDRALLEVLYGAGLRVSEAVALNLADLRWEGSGDAARLTLRVLQGKGNK 181 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM-----------------NATQFS 270 + + + L + + Sbjct: 182 DRVVPLGRKGAEAMRAWLDTREGLLAPTPREGMRSPARIDAGKAVFLGARGGRLSTRVAR 241 Query: 271 IWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + +G HG+R AT +G + + G ++ + YT Sbjct: 242 EVVYRRCQASGARAVVGPHGLRHSFATHLLQSGCDLRSIQSMLGHASLSTTQRYTH 297 >gi|124485609|ref|YP_001030225.1| formylmethanofuran dehydrogenase subunit E-like protein [Methanocorpusculum labreanum Z] gi|124363150|gb|ABN06958.1| phage integrase family protein [Methanocorpusculum labreanum Z] Length = 320 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 46/294 (15%), Positives = 91/294 (30%), Gaps = 32/294 (10%) Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-------RKSGDFDY-------- 111 T I Y + + A N+ ++ G Sbjct: 20 PKRTFSIWIPRYLSNLQTKNYAENTIEAYGRILKLFATYETYLKENDGSVPTSSEELNNF 79 Query: 112 ---RKITTKHIRSG------VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162 +I T G R+ +P+S Q+ +++ + + + Q+ NP V+ Sbjct: 80 GMGAEIDTNSYEIGDFFTLLRNERQLSPASLRQYDSALSSFYGYLINQDITEANPMTKVD 139 Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222 RPK K ++ ++ F + E + L + +G+R S+ C +H+ Sbjct: 140 RPKIKDRELKYLKHNEVVAFINSI-ENPRNALLIRTIYATGMRISEICGLLAEHIDFEEE 198 Query: 223 SIKTQKTG-TIITVELPDGFMKLLAMTPIGKE--TFFINNDKQKMNATQFSIWFKAKATK 279 +I+ + G I V + + GK+ F + ++ F Sbjct: 199 TIRVRGKGGKIRIVFCDSDTLNKIREHLNGKKSGPVFEGRNGNAISPRTVQHIFNIY--- 255 Query: 280 AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLG 332 A + H +R A+ + G ++ E Y D R Sbjct: 256 APPGITPHKIRHSYASELYKRSHNLRVVQENLGHNSIQTTEIYIHTDIDERRKA 309 >gi|217977361|ref|YP_002361508.1| integrase family protein [Methylocella silvestris BL2] gi|217502737|gb|ACK50146.1| integrase family protein [Methylocella silvestris BL2] Length = 329 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 38/320 (11%), Positives = 79/320 (24%), Gaps = 36/320 (11%) Query: 44 IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQI 102 +A + + R + L + +A + ++ Q Sbjct: 2 ANKKAAAPSLTRAARHDFAPADAE---LASCARAWLAHLGGERRVAELTLAAYSRDLRQF 58 Query: 103 IR----KSGDFD----YRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQE 151 + G ++ +R+ + +R+ S ++ L +R + R Sbjct: 59 LSFAAIHFGAPPSLAMVSTLSPADLRAFMAARRAAGVGSRSLLRQLAGLRSFTHYLQRSG 118 Query: 152 YVAINPCLSVERPKRKTEGIRPWTK---EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208 +V PK +P T + +S E + GL Sbjct: 119 VQQSAALGAVRAPKAPRRLPKPLTAAAACAVTSVESRAGEDRPTWILARDAAVLGLLYGA 178 Query: 209 SCRAG--------VQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND 260 R + T K G I + + + Sbjct: 179 GLRISEALSILRADAPIGERDTLRITGKGGKIREAPVIAPVRQAVEAYLKLCPYHLPPER 238 Query: 261 K-------QKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATY 311 ++ + + G+ + H +R AT G + Sbjct: 239 HLFVGAKGGPLSPRIIQLAVERMRGALGLPDSATPHALRHSFATHLLSRGGDLRSIQELL 298 Query: 312 GWKTVDQAETYTKGADRIRL 331 G ++ + YT D RL Sbjct: 299 GHASLSTTQIYT-AVDSARL 317 >gi|213692031|ref|YP_002322617.1| phage integrase family protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213523492|gb|ACJ52239.1| phage integrase family protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320458143|dbj|BAJ68764.1| putative phage integrase [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 391 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 58/355 (16%), Positives = 109/355 (30%), Gaps = 38/355 (10%) Query: 10 FVTKERTRHG--KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67 VT+ +T G + +RK G + + + P Sbjct: 3 NVTRYKTSKGENRYRVRYRKPDGTQTDKRGFRRKIDAENWAAEHVTIAKATNSYVDPEDG 62 Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVESR 126 + L ++ K W +R++ + + D IT +++ + Sbjct: 63 KRRVGDLYEQWLKE-KWPFWKETTRVNATEAWRLYCEERWADRRIGTITRAEVQAWISDI 121 Query: 127 KHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP--KRKTEGIRPWTKE----D 178 + S + +M + + AVR + + NPC +VE P R+ T Sbjct: 122 IASAGAPSVRRPYQTMLGICRMAVRDKLILDNPCENVELPKLPRRKSRRVYLTISRLLAF 181 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI---------------FS 223 + G++ R L + GLR ++ + L + Sbjct: 182 ADECSRGKHLGAERRALVLTLGFCGLRWGEAAALKARDLDFGRGVLHVGGNLVYVGARWV 241 Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN------DKQKMNATQFSIWFKAKA 277 T K V +P M+ L +E K +A + + W+ Sbjct: 242 EGTPKNSEERDVPMPLIVMEALKPMCGEREPDERVFRDLRGGPIMKQSAAKTTGWWYHAL 301 Query: 278 TKAGVNK----SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD 327 + G K + H +R +A+++ AGA L G K + Y D Sbjct: 302 VRLGWPKEEWPTPHDLRHTAASLAVHAGANVKALQRMLGHKNASMTLDVYADLFD 356 >gi|313114164|ref|ZP_07799716.1| site-specific tyrosine recombinase XerC family protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310623573|gb|EFQ06976.1| site-specific tyrosine recombinase XerC family protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 401 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 47/306 (15%), Positives = 90/306 (29%), Gaps = 46/306 (15%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD---------------------YR 112 I EY + + N+ S+ R + Sbjct: 23 IVEYVRYLEVIAGKSANTAFSYYCDLRGFSRFMKRRRGLVPEDSEMKDIDPKGLDTAFWA 82 Query: 113 KITTKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRK 167 +T + I + SS + L S+ + + V Q + +P ++ PK+ Sbjct: 83 SVTKEDIYEYLYFLNRECGNKKSSTARRLASLHGFYDYLVNQVNRLGADPTAAIHPPKQD 142 Query: 168 TEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223 + T E + S + L G+R ++ + + Sbjct: 143 KVLPKYLTAEQSMELLESTQTQSDFPERDYCMVTLFLNCGMRLAELVGMNLDDIDLENRQ 202 Query: 224 IK-TQKTGTIITVELPDGFMKLLAMTPIGKETF-----------FINNDKQKMNATQFSI 271 I+ K V L D M+ L + + T K++++ + Sbjct: 203 IRLFGKGHKERMVYLNDACMEALRLYLGKRNTMEGLLPQEKAVFITRRRKERISNRRVEQ 262 Query: 272 WFKAKATKAGVN-KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD-R 328 AG+ S H +R +AT+ G L G V + YT + + Sbjct: 263 LVTGAMKAAGLKGFSTHKLRHTAATLMYQTGNVDILTLKQLLGHSNVSTTQIYTHLQEFQ 322 Query: 329 IRLGIK 334 +R I+ Sbjct: 323 VRAAIE 328 >gi|307243971|ref|ZP_07526092.1| phage integrase, N-terminal SAM domain protein [Peptostreptococcus stomatis DSM 17678] gi|306492621|gb|EFM64653.1| phage integrase, N-terminal SAM domain protein [Peptostreptococcus stomatis DSM 17678] Length = 327 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 32/277 (11%), Positives = 87/277 (31%), Gaps = 14/277 (5%) Query: 59 EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH 118 + + + + L+ + + + S +++ + ++ + D ++I T Sbjct: 37 QVTQDKEHEENSEQNLVELFLSAKRIEGCSEKSLKYYKTMIETMLFQL-QKDVKQIVTDD 95 Query: 119 IR----SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 IR S+ + + + F W ++Y+ +P + + K T + Sbjct: 96 IRTYLTEYQNSKHSSRVTIDNIRRILSSFFSWLEDEDYILKSPVRRIHKVKTGTSVKETY 155 Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTII 233 + E ++ + +E + + +G+R + + + N Sbjct: 156 SDEALELMRDSCTE-LRDLAMIDMFASTGMRVGEMVLLNREDINFNERECVVFGKGDKER 214 Query: 234 TVELPDGFMKLLAMTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGV-NKSA 286 V L ++ + +M + + + G+ Sbjct: 215 IVYFDARTKIHLQNYLQSRKDNNPALFVSLQSPHNRMKIGGIEVRLRNLGNRLGLVKVHP 274 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 H R+ AT++ D G ++ G + +D Y Sbjct: 275 HKFRRTLATVAIDKGMPIEQVQQLLGHRRIDTTLQYA 311 >gi|191638912|ref|YP_001988078.1| Integrase homolog [Lactobacillus casei BL23] gi|190713214|emb|CAQ67220.1| Integrase homolog [Lactobacillus casei BL23] gi|327382965|gb|AEA54441.1| hypothetical protein LC2W_2109 [Lactobacillus casei LC2W] gi|327386149|gb|AEA57623.1| hypothetical protein LCBD_2127 [Lactobacillus casei BD-II] Length = 397 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 50/366 (13%), Positives = 114/366 (31%), Gaps = 38/366 (10%) Query: 14 ERTRHGKIIYY----FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP- 68 + ++G + G +I+ +T A + E + + R + Sbjct: 9 KTRKNGTFYFRAYLGVDPKTGEKIQKQVGGFTTRRDARKAYKEMVGGSVEKVVAERDQQH 68 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128 K E+ + + + S S + KI I+ Sbjct: 69 IQFKQFWEEFFLPWYKNQVKPQTYDSRRSSLKHF-KMFEHMYMDKIKPVDIQKWQNQMTC 127 Query: 129 TPSSAIQFL--TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 S + L + +F+ A+ ++ NP +V K+ + WTKE+ + + Sbjct: 128 QVSKSYTRLVQCMLSRVFQRAIVLGFMNENPTKTVGNVKKVKNQVDFWTKEEFEAVIKTF 187 Query: 187 SEGSQPRLAFEFLLY----SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD--- 239 + F L+ +G+R ++ + +++ KT + + Sbjct: 188 YIEDFYQHFCFFTLWFLFMTGMRIGEATALQWDDIDFEEGTVRINKTLWLRSYTNYSFST 247 Query: 240 --------------GFMKLLAMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKA 280 ++LL+ K F ++ + K A A Sbjct: 248 PKTKASNRTIPLDAKTLELLSDWKKAQALKCKTDFVLSFNGVPTRRDLVMRIIKRHAALA 307 Query: 281 GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRR 338 GV++ H +R A++ G + G + + TY + + ++R Sbjct: 308 GVHRIRVHALRHSHASLLISLGENPLVIKERLGHEDIQTTLGTYGHLYPN--MNFEAAKR 365 Query: 339 ISSVVD 344 ++ +V+ Sbjct: 366 LNGLVE 371 >gi|310639697|ref|YP_003944455.1| integrase family protein [Paenibacillus polymyxa SC2] gi|309244647|gb|ADO54214.1| Integrase family protein [Paenibacillus polymyxa SC2] Length = 374 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 44/367 (11%), Positives = 112/367 (30%), Gaps = 43/367 (11%) Query: 21 IIYYFRKGHGRR---IRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77 Y G+ RL LT + + +L ++ Sbjct: 10 TKYRVTFELGKDLNGKRLRDYATVNSEAEAKKLLTEFEHNQNRNLLVQSNAMSLIEFLNH 69 Query: 78 YRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSG----VESRKHTPSS 132 + + + + +++ I G + +K+ + HI+ ++ + +P++ Sbjct: 70 WMDNYVKYNCEETTTYGYKNILYKHISHFFGGIELQKLQSGHIQQYYKHLMDEKNLSPNT 129 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 + + +R + ++Q+ V N +VE PKRK + +T ++ + ++ Sbjct: 130 VHKHHSLIRKALDYGLKQQLVYRNVADAVELPKRKRYEGKSYT-KEQLIELLKKVKNTKL 188 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------------------- 232 + +Y GLR + +++ ++ + T Sbjct: 189 EIPIYLAVYLGLRREEIIGLKWKYVDFESRTLHIFEVRTSAGKAIITKAPKTEKSRRSLH 248 Query: 233 ----------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 + + +L + +++ + + FK K + Sbjct: 249 INDDLYSLLKMHKVKQEELKNMLGSAYDNAGYVYSHDNGKPYRVNSVTEQFKTFLEKQQL 308 Query: 283 NK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRIS 340 K H +R A++ + G + G + + YT D+ +S Sbjct: 309 PKIRLHDLRHSFASVLYNQGTDLKAISEALGHSDIGTTNKIYTHRFDKTH--KNTINAMS 366 Query: 341 SVVDSDD 347 + D Sbjct: 367 QALKGDF 373 >gi|251779032|ref|ZP_04821952.1| phage integrase [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083347|gb|EES49237.1| phage integrase [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 335 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 37/260 (14%), Positives = 82/260 (31%), Gaps = 13/260 (5%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--SRKHTPSS 132 + Y L+ + +++ + ++ I T +R + + PS+ Sbjct: 62 ATLYLACKKLEGLSPKTLNNYKLFLIKLNMYF-TKPCSTIGTMDLRMFLALLGKGKQPST 120 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 ++T ++ F W +EY+ NP +++ K + + E++++ + + Sbjct: 121 VNGYITCLKNFFGWLQNEEYIIKNPAFRLKQTKVPKVVRQGYKAENLEKLREACKTE-RE 179 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLAMTPIG 251 + FE L + R S+ + + + K V L Sbjct: 180 KALFELLDSTACRISEIQNIKLPDINWHEKSIKVLGKGSKERIVYFSTRAKLALENYIKD 239 Query: 252 KETFFINNDKQKMNA------TQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGAT 303 + + K K ++GV + AH R+ AT + G Sbjct: 240 RSDNNNSLFISKKFKNKTIGVRSLQNIIKKIYERSGVTERVYAHKFRRTQATRLLNQGMR 299 Query: 304 AHELMATYGWKTVDQAETYT 323 + G T + Y Sbjct: 300 IEGVQGILGHTTPTTTQIYA 319 >gi|222148689|ref|YP_002549646.1| phage-related integrase [Agrobacterium vitis S4] gi|221735675|gb|ACM36638.1| phage-related integrase [Agrobacterium vitis S4] Length = 346 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 56/310 (18%), Positives = 106/310 (34%), Gaps = 25/310 (8%) Query: 19 GKII-YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77 G YY+ G R++ F + A + TL ++IS Sbjct: 18 GSKRDYYYAWKGGPRLK-EKYGTPAFAEEFRQA---------TRDRSAPDADTLAYVISL 67 Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI----TTKHIRSGVESRKHTPSSA 133 Y++ L ++R ++ Y I + GD D R + + ++ TP +A Sbjct: 68 YKR-MELPRLKPSTRSTYLPYLKNIEIEFGDMDIRAVEATGSRAVFLEWRDTMATTPRAA 126 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193 + ++ + + V E + NPC + R + R + Q Sbjct: 127 DIAWSILQRIMAFGVHMEKLKRNPCTNAGRLAE-SGTRREIIWTPPDLSRFRAVASRQLA 185 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM------ 247 A +++G R D + +K KTG + + + K+L Sbjct: 186 DALLLAIWTGQRQGDLLKLQWSAYDGKHIRLKQGKTGRRVAILVSGTLGKMLDRLKAENE 245 Query: 248 -TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAH 305 + T N + ++ F + A KAG+ + H +R T++ AGA+ Sbjct: 246 ARKVQSLTILTNQRGRTWTSSGFKTSWGKAAKKAGITGLTFHDLRGTFITMARRAGASIE 305 Query: 306 ELMATYGWKT 315 ++ G T Sbjct: 306 DIAKASGHTT 315 >gi|314923769|gb|EFS87600.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL001PA1] gi|314966217|gb|EFT10316.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL082PA2] gi|315095107|gb|EFT67083.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL060PA1] gi|315104336|gb|EFT76312.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL050PA2] gi|327328115|gb|EGE69884.1| putative tyrosine recombinase XerC [Propionibacterium acnes HL103PA1] Length = 300 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 41/291 (14%), Positives = 94/291 (32%), Gaps = 28/291 (9%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGVESRKHTPS 131 + ++ + N+ + + ++ GD +I +R+ + + + Sbjct: 7 VEDFCDHLLALRRSPNTIRGYRADLIDLMSHAYSHGDDILGRIGISQVRAWLADTRVAGA 66 Query: 132 SAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI---------RPWTKEDM 179 SA + ++ RV F+WA + V+ +P ++ K + Sbjct: 67 SAATMQRRWSAARVFFRWAANEGLVSADPTATLNSVKVPKRLPATLGVDQARHILDEAVA 126 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELP 238 Q G++ E L GLR + C + + T K TV + Sbjct: 127 QARHDESPHGARDAAILEVLYGGGLRVGELCGLDLGDVDRSRHTVKVTGKGDKERTVPMG 186 Query: 239 DGFMKLLAMTPIGKETFFINN---------DKQKMNATQFSIWFKAKATKAG--VNKSAH 287 ++ + +E + + ++++ + H Sbjct: 187 APALRAIDTWLPRREEWVGPHSGQALFLGERGRRIDQRVVRRVVHTHLRAEPDSPDLGPH 246 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337 G+R AT + GA + G K++ + YT + +R+R + + Sbjct: 247 GLRHAMATHLLEGGADLRTVQDMLGHKSLATTQIYTHVSTERLRTAFRQAH 297 >gi|210617017|ref|ZP_03291352.1| hypothetical protein CLONEX_03574 [Clostridium nexile DSM 1787] gi|210149540|gb|EEA80549.1| hypothetical protein CLONEX_03574 [Clostridium nexile DSM 1787] Length = 353 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 41/342 (11%), Positives = 95/342 (27%), Gaps = 34/342 (9%) Query: 1 MTPSLRLPPFVTKERTRHGKII---YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPK 57 M +P + + + G YY ++ + Sbjct: 1 MKGDRHMPTY---KDEKTGTWFVKCYYTDYMGNKKQKKKRGFARQKDAKEW-------EY 50 Query: 58 REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117 + TT + +++ + + S+ I+ D +I K Sbjct: 51 SFLSSLQYDSDTTFGSVSNDFIEENTPRRRK-TTIRSYNIALKHILPTFKDIPLSEINEK 109 Query: 118 HIRSGVESRKHTPSS---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 I +T S + T R ++K+ ++ + NP +E+ + + + Sbjct: 110 MIILWQNELLNTELSEVYINKIDTMFRTIYKYGAKRCGLRSNPFDGIEKIGKASNKSLHF 169 Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-- 232 + + E R+AF+ L Y G+R + + + + K+ Sbjct: 170 WTHEQYNAFIPYIEQPTTRMAFQVLYYCGIRIGELFALTAGDIDLDEQIMHITKSLQRME 229 Query: 233 --------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278 + LP+ +K L +++ K + Sbjct: 230 RQDVITPPKTRKGIRDITLPNFLVKELENYMSMIYDCNGETRLFEISKQSLYYPMKKYSE 289 Query: 279 KAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 A V + H +R + + G + + G + Sbjct: 290 IARVPRIRIHDIRHSHVALLIEKGVSPLAIAERLGHDDIKIT 331 >gi|254453490|ref|ZP_05066927.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 238] gi|198267896|gb|EDY92166.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 238] Length = 368 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 47/343 (13%), Positives = 113/343 (32%), Gaps = 18/343 (5%) Query: 9 PFVTKERTRHGKIIYYFRKGHG--RRIRLPYPHESTFIPAYMSALT-GSTPKREYINSPR 65 + + K Y+ + G +RI + + A +AL R + + Sbjct: 38 KGLVLFVGKRSKTWYFQKDVGGQTKRILIGRFPIISAQAARQTALGFALEMGRGAGKAAQ 97 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 L+ + Y + +++ + ++ +I+ Sbjct: 98 IGAPILEAAMEVYLARPKLR--SETNKVGMRAQLTLHLKDWMRLPLDEISKAMSVRRHHD 155 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 +PS+A L S R ++ A R + P +++E + K +G R + Sbjct: 156 MAGSPSAANHVLRSFRAIYNHARRTGDLPECPTMAIEWFEDKPDG-RIIENLKHWRKTID 214 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 R+ +E LL++GLR ++ + + + + K G + + ++L Sbjct: 215 DLPNPIHRVFYELLLFTGLRKTEVFTLKWEQVLEDRIHLPMTKNGRSFDLPISQLHHEIL 274 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAH 305 A + I + + + + H R+ AT++ +AG Sbjct: 275 APLRPLSSDWVI------PSPKSETGHITRPVR---LKYNPHMHRRTFATVAMEAGVLEE 325 Query: 306 ELMATYGWKTVDQA-ETYTK-GADRIRLGIK-NSRRISSVVDS 345 + + + Y + D +R ++ + + +D+ Sbjct: 326 IVGRLLNHTPLSITGQRYVRPSLDALRPSMEIACAELLNRIDN 368 >gi|92115230|ref|YP_575158.1| phage integrase [Chromohalobacter salexigens DSM 3043] gi|123083908|sp|Q1QSU9|XERC_CHRSD RecName: Full=Tyrosine recombinase xerC gi|91798320|gb|ABE60459.1| phage integrase [Chromohalobacter salexigens DSM 3043] Length = 298 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 39/298 (13%), Positives = 89/298 (29%), Gaps = 26/298 (8%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFDYRKITTKHIRSGV---ESR 126 + + S + + + ++ + + SG D+ + +R + +R Sbjct: 3 AAVERFLHSLSGHA-SPATLDAYRRDLTALARFLEASGIDDWAALDVAQVRRFMGAERTR 61 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 P S + ++ VR + NP + P++ RP + + +F Sbjct: 62 GLAPRSLARRRAALSRFADHLVRSGILDHNPVALTQTPRQPRHLPRPVDVDQLARFLDTP 121 Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242 +G+ + + E GLR ++ V L + + + + Sbjct: 122 HDGTPLAVRDQAMLELFYSCGLRLAELTALDVTDLDARRLRVVGKGN-KPRQMPIGRRAQ 180 Query: 243 KLLAMTP--------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKF 292 LA + F+ ++ A + G+ + H +R Sbjct: 181 AALADWYRLRGQLAGHDEPALFVGQRGARLGHRAVQKRLAQLARERGLAEHLHPHRLRHS 240 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG---IKNSRRISSVVDSDD 347 A+ ++ + G + + YT+ D L + R DD Sbjct: 241 FASHLLESSQDLRAVQELLGHANLSTTQVYTR-LDWQHLADAYDQAHPRARRRAPPDD 297 >gi|308271817|emb|CBX28425.1| hypothetical protein N47_G37490 [uncultured Desulfobacterium sp.] Length = 392 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 52/356 (14%), Positives = 98/356 (27%), Gaps = 30/356 (8%) Query: 14 ERTRHGKIIYY--FRKGHGRRIRL--PYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 + + G++ Y+ +R GR++R + A G + ++ + Sbjct: 29 KAKKSGRVRYWVSYRLPGGRQVRRIEGGGYSLKDTLAAEGKTKGLKVENRILDIKPEAKM 88 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129 T L Y LA + + + GD ++ + + RK Sbjct: 89 TFNQLTKWYLDLERVKMLARYPI--LKINLNSFNQVFGDTIVNQLKPADLENYQAKRKAQ 146 Query: 130 PSS---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR-----KTEGIRPWTKEDMQQ 181 + Q + R + A + V+ + +R K+ R + E+ + Sbjct: 147 GQADAYVDQQIAMARAMINKAFDNDIVSGDTIKVFKRVKKLLKGSSNTRDRVLSAEEFDK 206 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVEL 237 + S + Y G+R + + I+ K V + Sbjct: 207 LMNA--LPSHAKAIVATGYYGGMRKGEVVNLTWDKVDMKGRVIRLGANDTKDREARQVPI 264 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--------AHGV 289 D +L P + K K + AG+ H Sbjct: 265 CDALYDILEEIPRAINDNHVFLFKGKP-IKNLRTALRKACRVAGIPYGRGTKDGFVFHDT 323 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETY-TKGADRIRLGIKNSRRISSVVD 344 R T +G +M G T + Y T A R + VD Sbjct: 324 RHCFNTNMRKSGVPESVIMKITGHSTREMFLRYDTVDATDTRKAVDQMEGFLKSVD 379 >gi|282854671|ref|ZP_06264006.1| phage integrase, N-terminal SAM domain protein [Propionibacterium acnes J139] gi|282582253|gb|EFB87635.1| phage integrase, N-terminal SAM domain protein [Propionibacterium acnes J139] gi|314981983|gb|EFT26076.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL110PA3] gi|315090894|gb|EFT62870.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL110PA4] Length = 300 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 41/291 (14%), Positives = 94/291 (32%), Gaps = 28/291 (9%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGVESRKHTPS 131 + ++ + N+ + + ++ GD +I +R+ + + + Sbjct: 7 VEDFCDHLLALRRSPNTIRGYRADLIDLMSHAYSHGDNILGRIGISQVRAWLADTRVAGA 66 Query: 132 SAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI---------RPWTKEDM 179 SA + ++ RV F+WA + V+ +P ++ K + Sbjct: 67 SAATMQRRWSAARVFFRWAANEGLVSADPTATLNSVKVPKRLPATLGVDQARHILDEAVA 126 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELP 238 Q G++ E L GLR + C + + T K TV + Sbjct: 127 QARHDESPHGARDAAILEVLYGGGLRVGELCGLDLGDVDRSRHTVKVTGKGDKERTVPMG 186 Query: 239 DGFMKLLAMTPIGKETFFINN---------DKQKMNATQFSIWFKAKATK--AGVNKSAH 287 ++ + +E + + ++++ + H Sbjct: 187 APALRAIDTWLPRREEWVGPHSGQALFLGERGRRIDQRVVRRVVHTHLRAEPDSPDLGPH 246 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337 G+R AT + GA + G K++ + YT + +R+R + + Sbjct: 247 GLRHAMATHLLEGGADLRTVQDMLGHKSLATTQIYTHVSTERLRTAFRQAH 297 >gi|118511775|emb|CAD20932.2| IntI1 integrase [Salmonella enterica subsp. enterica serovar Infantis] Length = 337 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 35/303 (11%), Positives = 85/303 (28%), Gaps = 52/303 (17%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132 ++ + R+ + ++ + ++ ++ IR G + + + + + + S Sbjct: 16 VLDQLRERIRYLHYSLRTEQAYVNWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 ++ L + + + + RP+ T +++ + + Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230 RL + L +G+R S+ + V+ L + +I ++ Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193 Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265 + + A + + M Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253 Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 F FK +AG+ K + H +R AT +G + G V YT Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313 Query: 324 KGA 326 Sbjct: 314 HVL 316 >gi|254498110|ref|ZP_05110867.1| phage related integrase [Legionella drancourtii LLAP12] gi|254352676|gb|EET11454.1| phage related integrase [Legionella drancourtii LLAP12] Length = 410 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 46/344 (13%), Positives = 103/344 (29%), Gaps = 34/344 (9%) Query: 28 GHGRRIRLPYPHESTFIPAYMSA------LTGSTPKREYINSPRKKPTTLKWLISEYRKS 81 G +R+ L T A A + + + TL+ ++++Y K+ Sbjct: 57 GKVKRVTLGKYGNLTVEEARKQAKSLLGSVARGDDPIAEKKTKKVHAMTLQQVLNDYLKT 116 Query: 82 AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI--RSGVESRKHTPSSAIQFLTS 139 L + ++ +++ D IT + I R + ++ + A + Sbjct: 117 R--KDLKPRTLNDYQCVLHEVVPDWLDKPLVNITREMIAKRHTKHGQANSKARANNAMRV 174 Query: 140 MRVLFKWAVRQE---------------YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 +R +F +A+ + Y++ K+ Sbjct: 175 LRAIFNYAMYEYQDGNGHPIITINPVKYLSHTRAWYRVDRKQTVIKPHQLADWYKAVIIL 234 Query: 185 FWSEGSQPRLAFEFL----LYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239 ++ + L + L++G+R ++ + + +I I Sbjct: 235 VETDNYRNALLWHDYFLLLLFTGMRKMEAASLRWEDIDLKSKTITLQDTKNREIHTLPMS 294 Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQF--SIWFKAKATKAGVNKSAHGVRKFSATIS 297 F+ L +T + + +GV + H +R+ ATI+ Sbjct: 295 DFVYELMERRSRNKTSEFVFPAESKTGYIYEPKKAVNRVVELSGVPFTLHDLRRTFATIA 354 Query: 298 ADAGATAHELMATYGWK-TVDQAETYT-KGADRIRLGIKNSRRI 339 A+ L K D Y K +R+R ++ Sbjct: 355 DSLDLPAYALKRLLNHKMNNDVTAGYIMKDVERLRKPMQQVANF 398 >gi|71064781|ref|YP_263508.1| tyrosine recombinase XerC subunit [Psychrobacter arcticus 273-4] gi|71037766|gb|AAZ18074.1| tyrosine recombinase XerC subunit [Psychrobacter arcticus 273-4] Length = 345 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 35/296 (11%), Positives = 88/296 (29%), Gaps = 29/296 (9%) Query: 59 EYINSPRKKPTTLKWLIS---EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115 + + L+ L++ + + + ++ ++ + +Q+ Sbjct: 23 AELALTIEADAALRELLAPVHRWLNVLSVRNHSPHTLTAYFAGLNQLALFLRGKCLTWTR 82 Query: 116 ------TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169 +HI ++ K +S Q L+++R + W + ++ INP + + Sbjct: 83 CDKRQLAQHISQRLDEDKLALASVQQELSAIRHFYGWLIEEDLARINPTTGYQLKRSPRP 142 Query: 170 GI--------RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221 +++ + + FE L SGLR + + + Sbjct: 143 LPSIADVDLLTQLLDQEIPDTPEQARLWLRDKAMFELLYSSGLRVGELVALDIADVDLAD 202 Query: 222 FSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFINNDK---------QKMNATQFSI 271 ++ V L + + + D +++ Sbjct: 203 LRVRVTGKGNKTRLVPLGIKAADAIRRYLPHRNLWVEQMDTALFISEKLGTRLSTRAVQQ 262 Query: 272 WFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 K AT+AG+ ++ H +R A+ + G + + YT Sbjct: 263 RLKVAATRAGIAQNMYPHLLRHCFASHMLSGSGDLRAVQEMLGHSDISTTQIYTHV 318 >gi|238788398|ref|ZP_04632192.1| Integrase [Yersinia frederiksenii ATCC 33641] gi|238723644|gb|EEQ15290.1| Integrase [Yersinia frederiksenii ATCC 33641] Length = 334 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 54/325 (16%), Positives = 92/325 (28%), Gaps = 31/325 (9%) Query: 19 GKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76 GK I Y G+R+R A+ + ++ + L LI Sbjct: 9 GKWICECYPAGREGKRVR-KQFATKGEALAFERFTMEQVDNKPWLGEKQDTRL-LSELIE 66 Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK------------HIRSGVE 124 + ++ L+ S + R GD T K I G Sbjct: 67 IWHRAHGVT-LSDG--KSRHQVLLNMCRDLGDPRAVDFTAKAFSQYREQRLNGEILRGTR 123 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 ++ TP + L +R +F R E+ NP V + + + + TKE + + Sbjct: 124 TKGVTPRTLNIELAYLRAMFNELSRLGEWRQDNPLRDVRQYRTDEQEMAFLTKEQIGKLL 183 Query: 184 SFWSEGSQPRLAFEF--LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 S P LA L +G R S++ + + K ++ + + Sbjct: 184 EECENSSVPELATVVRLCLATGARWSEAESLTHTQVMPYKVTYTKTKGKRNRSIPISEEL 243 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAG 301 L F K K + +H +R A+ G Sbjct: 244 FNSLPKKNGRLF---------PSCYAAFRTALKRTNIKLPDRQCSHVLRHTFASHFMMKG 294 Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326 L G + Y A Sbjct: 295 GNILVLQRILGHTDIKMTMRYAHFA 319 >gi|297570135|ref|YP_003691479.1| integrase family protein [Desulfurivibrio alkaliphilus AHT2] gi|296926050|gb|ADH86860.1| integrase family protein [Desulfurivibrio alkaliphilus AHT2] Length = 332 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 43/317 (13%), Positives = 90/317 (28%), Gaps = 14/317 (4%) Query: 20 KIIYYFR---KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76 + Y R + HG R + A+ + + + YI + TL+ ++ Sbjct: 7 RGQYQIRAKVRKHGYRTITKTFNNVADAKAWARQVEAAMDRGAYIPVAAAEKNTLRMVLE 66 Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSA 133 YRK LA R F +++ GD + + + R P + Sbjct: 67 RYRKEICPR-LARAGRDEFAR-LNRLTEALGDLSLAALQPAEVARYRDQRLKAGAAPQTV 124 Query: 134 IQFLTSMRVLFKWAVRQEYVAINP---CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 L + + K V + + V +P + R + ++ + Sbjct: 125 KHDLGLLNRVLKACVMDWGIPLPHGIVTAQVRKPSPPSGRDRRLESREEEKLLAAAQASK 184 Query: 191 QPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248 + L + R ++ +H+ + T Sbjct: 185 SREIEKIITIALETAARRAEIASMRWEHINLDKRIWFIPAAATKTKTARTVPLSTGAMAV 244 Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHEL 307 G + + F +A + + H +R + + + G E+ Sbjct: 245 LQGLPRRIDGQVWSFSHPDGITQAFDRICKRAEIEDLRFHDLRHEATSRLFEKGLNMMEV 304 Query: 308 MATYGWKTVDQAETYTK 324 A G K + + YT Sbjct: 305 AAITGHKDLKMLKRYTH 321 >gi|288556218|ref|YP_003428153.1| integrase family protein [Bacillus pseudofirmus OF4] gi|288547378|gb|ADC51261.1| integrase family protein [Bacillus pseudofirmus OF4] Length = 362 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 45/325 (13%), Positives = 91/325 (28%), Gaps = 60/325 (18%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--------------FDYRKITTKHI 119 I +Y S + + + + D+ +I I Sbjct: 38 FIQQYLISRVSLGYSKQTIQRYIYDYHYFFHYVKRVSEDPSFQPAAVTLKDFLQIEKAAI 97 Query: 120 RSGVESRK----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 + + P + + +++++ LF + V++ NP L VERPK T Sbjct: 98 EHYITYLSLEVENEPRTINRKISALQSLFDYLVKKGETTTNPVLGVERPKVGKRDPVFLT 157 Query: 176 KEDMQQFKSFWSEGS---------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220 + Q + S + L+ SGLR S+ ++ Sbjct: 158 INEAQLLLKAVKDTSSLSFRQKKYAEKLLARDYAVIYLLISSGLRISELANVKMKDFDKE 217 Query: 221 IFS-IKTQKTGTIITVELPDGFMKLLAM----------------TPIGKETFFINNDKQK 263 K ++ L + +L F ++ Sbjct: 218 ENILKVQGKGNKERSIPLSYETIDVLTYYLDSLPIKSRPKQSEDHLFIGYDFQSQEYTKQ 277 Query: 264 MNATQFSIWFKAKATKAG--------VNKSAHGVRKFSATISADAGATAHELMATYGWKT 315 + + + + +A +AH +R AT G + + G ++ Sbjct: 278 VTVSALQKMIQRQLHRAKQYAPSLQHKTITAHKLRHSFATALVAKGVDVLTVQSLLGHES 337 Query: 316 VDQAETYTKGADRIRLGIKNSRRIS 340 V + Y D R + R+S Sbjct: 338 VATTQVYAHVQDDAR--KEAITRLS 360 >gi|241762668|ref|ZP_04760738.1| integrase family protein [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241372739|gb|EER62461.1| integrase family protein [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 307 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 40/280 (14%), Positives = 87/280 (31%), Gaps = 23/280 (8%) Query: 74 LISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITT--------KHIRSGVE 124 L +++ + + + + ++ + + I G+ I IR+ + Sbjct: 16 LATQWEQYLQFSLRRSPHGIRAYMATVHRFISFLGNHRGDLIDKNTLQKTDIAEIRAFLA 75 Query: 125 SRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQ 180 R+ + SS + ++ +R ++ AI + P+ + ++ Sbjct: 76 YRRQSGLANSSVAREISGIRAFLRFIGLDPIPAIKGARVKKGIPRPLSPEDAVALAKEAS 135 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 + S ++ L SGLR S++ + L K I V L + Sbjct: 136 EEASEQWIEARDLALLLLLYGSGLRISEALNLTCEILPLQTTLRVVGKRSKIRIVPLLEK 195 Query: 241 FMKLLAMTPIGKETFFINNDKQKM-------NATQFSIWFKAKATKAGVN--KSAHGVRK 291 + + F + +A + G++ + H +R Sbjct: 196 VKRAMETYVRLCPYAFSGSQPFFRGAKGGVLSADVLRRTVRKARYHLGLDNKATPHALRH 255 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 A+ GA L G ++ + YT D RL Sbjct: 256 SFASHLLGRGADLRSLQELLGHASLSSTQIYT-AVDAARL 294 >gi|210610936|ref|ZP_03288661.1| hypothetical protein CLONEX_00851 [Clostridium nexile DSM 1787] gi|210152236|gb|EEA83243.1| hypothetical protein CLONEX_00851 [Clostridium nexile DSM 1787] Length = 351 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 49/356 (13%), Positives = 105/356 (29%), Gaps = 45/356 (12%) Query: 16 TRHGKII----YYFRKGHGRRIR-LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 TR GK+ YY RR + + + + + Sbjct: 4 TRDGKLWRSQFYYKDWQGIRRKKNKRGFKTKGEADEW--------ERNFLQQQQKNLDIS 55 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT 129 + + Y L ++ I+ FD ++ +I T IR+ Sbjct: 56 FENFVEIYFADMENR-LRESTIINKRYVFDLKVTPYFRHKKMCEIQTSDIRAWQNELIKK 114 Query: 130 PS------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDMQQF 182 S L ++ F +AVR + NPC + + + WTK++ ++F Sbjct: 115 GYAPTYLKSINNQLAAL---FNYAVRYYDLRDNPCRKAGSIGKSKADEMDFWTKQEFKEF 171 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------- 232 + R+AF L ++G+R + + + I+ K+ Sbjct: 172 LPSMENKPEARMAFLILYWTGMRIGELLALTYEDIDLEKRCIRINKSYQRINGKDMITPP 231 Query: 233 ------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-S 285 + +P + L + + GV + Sbjct: 232 KTPKSNRKITIPLFLAEELKEYCSMLYGITDKERMFRFTKSFMEHEMVRGIKATGVRRIR 291 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRIS 340 H +R A++ + G + G + ++ TY+ + + + ++ Sbjct: 292 LHDLRHSHASLLVEMGFQPLAIAERLGHEKIETTLNTYSHLYPNKQ--AELAEKLE 345 >gi|90961706|ref|YP_535622.1| Phage integrase [Lactobacillus salivarius UCC118] gi|90820900|gb|ABD99539.1| Phage integrase [Lactobacillus salivarius UCC118] gi|300214507|gb|ADJ78923.1| Phage integrase [Lactobacillus salivarius CECT 5713] Length = 373 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 31/357 (8%), Positives = 97/357 (27%), Gaps = 33/357 (9%) Query: 17 RHGKIIY----YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 + GK ++ G + Y + L + + + Sbjct: 6 KRGKTYRATVLWYEDGVRKFKSKSGFKTKREAQIYANELENLKARNFISQNSKTP---FP 62 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTP 130 + ++ S++ +++++++ F+ + + G ++ + R + + H Sbjct: 63 EYFWSWFETYKESSVSERTKLTYKNTFNVLKKHLGGIPIEEMDRRLYRKFIAEFGKDHAK 122 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP------WTKEDMQQFKS 184 S+ +F + K A+ + + + + + + TK+ Sbjct: 123 STVSKFNSLYHACVKDAMYDGDMTKDFIAGTDIVYNRKKTRKIDYLNIEETKKLTNYLTD 182 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF------------SIKTQKTGTI 232 + + + +G R + + + + T+ + Sbjct: 183 TLNHNFTAKYMILLAIATGARLGEMQALTWKDINFHTIDINKSWNETTKKFQPTKNESSK 242 Query: 233 ITVELPDGFMKLLAM-TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHG 288 + + + L + FIN ++ + + + G++K H Sbjct: 243 RIIRVNQNTLDYLQDLKQNNHDMVFINQYNTIPTSSAVNKTLRMCLKELGIDKPSFHFHS 302 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAET-YTKGADR-IRLGIKNSRRISSVV 343 +R + + G + Y+ D I + Sbjct: 303 LRHTHVAYLLSENIDLYIISKRLGHSDISTTSRVYSYLIDEYKNRADNKIENIVDKL 359 >gi|325568568|ref|ZP_08144861.1| bacteriophage integrase [Enterococcus casseliflavus ATCC 12755] gi|325157606|gb|EGC69762.1| bacteriophage integrase [Enterococcus casseliflavus ATCC 12755] Length = 408 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 47/382 (12%), Positives = 106/382 (27%), Gaps = 55/382 (14%) Query: 1 MTPSLRLPPFVTKERTRHGKIIYYFRKG------HGRRIRLPYPHESTFIPAYMSALTGS 54 M P + K + G Y F+K G++ ++ A ++ Sbjct: 1 MATKPN-P--IKKYTKKDGSTAYMFKKYLGIDPVTGKQRETTRRGFTSLKEAKLAYARLD 57 Query: 55 TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRK 113 E R K + ++ + + ++ + F I+ G ++ + Sbjct: 58 IDVAENGIKQRSSNRAYKEVFEDWFNLVYKTKVKESTYWNTRIIFDKHILPALGSYNIKA 117 Query: 114 ITTKHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 IT + + K P+ +++ ++FK+A + NP + P Sbjct: 118 ITVTACQKQANAWCKDNPNRYDRYINYAGMIFKYAESIGEIPSNPMQKIILPTPAESIEG 177 Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFL---------LYSGLRCSDSCRAGVQHLQNNIF- 222 + + + Y+GLR ++ + + Sbjct: 178 DESDVINFCNRQELLSLLKELKENYPFKRFVFFSLLAYTGLRKGEALALTWRDIDFKHQT 237 Query: 223 ----------------SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK--- 263 K + + T+ + LL ++ + Sbjct: 238 LTVNKTLAVGKNGTSLIQKPKTKAGVRTISIDSDTADLLKEWRKHQKKHIDSLAMMPSIE 297 Query: 264 ------------MNATQFSIWFKA-KATKAGVNK-SAHGVRKFSATISADAGATAHELMA 309 MN W +++ + HG R A++ +AGA+ ++ A Sbjct: 298 QLVFAKDEDNGLMNPRTPQTWLDTLYRKNKSLHQITPHGFRHTHASLLFEAGASMKQVQA 357 Query: 310 TYGWKTVDQAE-TYTKGADRIR 330 G + YT + Sbjct: 358 RLGHSNIKTTMNVYTHVTKEGK 379 >gi|92116109|ref|YP_575838.1| tyrosine recombinase XerD [Nitrobacter hamburgensis X14] gi|91799003|gb|ABE61378.1| tyrosine recombinase XerD subunit [Nitrobacter hamburgensis X14] Length = 319 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 41/279 (14%), Positives = 85/279 (30%), Gaps = 38/279 (13%) Query: 89 VNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRKHTPSSAIQFLTSMRVL 143 N+ ++ + + +T + ++ R SS + L++MR L Sbjct: 27 DNTLDAYRRDLEDLSAFLTRVGQTFVTAGTQTLRDYLGDLDVRGFKSSSVARRLSAMRHL 86 Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS------------- 190 F++ + + + +P + PKR + + D+ + + Sbjct: 87 FRFLLSERIRSDDPAAILSGPKRGRSLPKVLSIADVDRLLACAKAAMETPDASPARRLRA 146 Query: 191 -QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT 248 + E L +GLR S+ + + + I + V L + + +A Sbjct: 147 ARLYCLLEVLYATGLRVSELVSLPLSAARRDARMIVVRGKGNKERLVPLNEASRQAMADY 206 Query: 249 ---------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290 K F + + F+ K A AG+ S H +R Sbjct: 207 LAAMADRRGADKAVAVQPKWLFPSFGESGHLTRQHFARELKELAAAAGLAPRLVSPHVLR 266 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 A+ GA + G + + YT + Sbjct: 267 HAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEER 305 >gi|332187766|ref|ZP_08389500.1| phage integrase, N-terminal SAM-like domain protein [Sphingomonas sp. S17] gi|332012116|gb|EGI54187.1| phage integrase, N-terminal SAM-like domain protein [Sphingomonas sp. S17] Length = 292 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 40/279 (14%), Positives = 89/279 (31%), Gaps = 22/279 (7%) Query: 74 LISEYRKSAHWG-SLAVNSRISFESYFDQII----RKSGDF----DYRKITTKHIRSGVE 124 LI++Y + + ++ ++ + +++ R G +IT +R+ + Sbjct: 4 LIADYYRHLTVDLRRSDHTVRAYVATAERLTGFLTRHWGSEVDAGALSRITATDLRAYLA 63 Query: 125 SRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 R+ T +S + L+++R ++A + P P+ + ED+ + Sbjct: 64 FRRGEGLTAASTARELSAVRTFLQFAGIEPPALKGPRRKRSMPRPQAPADIIALAEDVAE 123 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 + ++ L +GLR ++ L K V L Sbjct: 124 DAAEPWIAARDWAVLLLLYGAGLRIGEALALPAAILPLGETLRVLGKRDKTRIVPLLPQV 183 Query: 242 MKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKF 292 + + + ++ + + G+ + H +R Sbjct: 184 REAIERYAAQMPFAVEGREPLFRGAKGGPLSPAIIRRSVRGARERLGLGARTTPHALRHS 243 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 AT GA +L G ++ + YT D RL Sbjct: 244 FATHLLGRGADLRQLQELLGHASLSSTQIYT-AVDAARL 281 >gi|28210981|ref|NP_781925.1| site-specific tyrosine recombinase XerC [Clostridium tetani E88] gi|28203420|gb|AAO35862.1| putative integrase, recombinase [Clostridium tetani E88] Length = 328 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 42/299 (14%), Positives = 93/299 (31%), Gaps = 46/299 (15%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSG------------------------DFDYRK 113 Y + + N+ +++ R Sbjct: 22 YLTTVKER--SPNTMSAYKVDLVMFFRFLKLYKTKLPKDIEFDDIDISDIDDEFIRKITL 79 Query: 114 ITTKHIRSGVESRKHTPSSAI-QFLTSMRVLFKWAVRQEYV-AINPCLSVERPKRKTEGI 171 + +++ + S A + + +++ FK+ + + NP + +E PK K Sbjct: 80 TDLYSFMAFLDNYRDNGSYAKARKVATLKSFFKFLYSKVKILEENPAIELESPKIKKRNP 139 Query: 172 RPWTKEDMQQFKSFWS--EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229 T E+ ++ + ++ L GLR S+ C + ++ + K Sbjct: 140 TYLTLEESKRLLASIDGTNKARDYCIITLFLNCGLRLSELCSIDISKIKEDTLY-VIGKG 198 Query: 230 GTIITVELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATK 279 T+ L +K + + FI+ + ++N I K K Sbjct: 199 NKERTIYLNKACLKAVEDYLKVRNKNLDKIKDKDALFISRNNTRINKRTVEIMLKKYLKK 258 Query: 280 AGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADRI-RLGI 333 A ++ + H +R +AT+ G L G + + + YT + R + Sbjct: 259 ANLDEEKYTPHKLRHTAATLMYKHGDVDIRSLQKILGHENISTTQIYTHVDNEKLREAV 317 >gi|325955709|ref|YP_004293183.1| integrase/recombinase [Lactobacillus acidophilus 30SC] gi|325334689|gb|ADZ08242.1| integrase/recombinase [Lactobacillus acidophilus 30SC] Length = 284 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 39/266 (14%), Positives = 86/266 (32%), Gaps = 12/266 (4%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESR--- 126 + LI E+ + A + + +E + ++ + +E + Sbjct: 7 EKLIDEFIEDLRLQGRAEGTLLEYEMRLKEFAEFFQLKALALDQVKKSDLTEFMEQKLSN 66 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK--TEGIRPWTKEDMQQFKS 184 S+ L++ RV WAV + Y++ + PK R + Sbjct: 67 CLKVSTIRGKLSTFRVFCLWAVNKNYLSEVIISPQDYPKNTNVKRIRRLSDENLTIFKHY 126 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDG 240 + R AF L+ SG R +++ + + ++ I+ K G+ + + D Sbjct: 127 IDTLQPNARAAFYLLIGSGCRVAEAANLKAEDVTLRGKSVYIDIRNAKWGSDRNIPIVDA 186 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADA 300 + + +++ + A G+N H +R A + + Sbjct: 187 DAAKIVWKYRTEVEVDNRPLF-RLSKRTLQNYATNFAKSTGINFYCHLLRHTFAGLLTEK 245 Query: 301 GATAHELMATYGWKTVDQAETYTKGA 326 G + G K++ Y + A Sbjct: 246 GVPLTTVQYLLGHKSLGMTAHYAQSA 271 >gi|299137336|ref|ZP_07030518.1| integrase family protein [Acidobacterium sp. MP5ACTX8] gi|298600741|gb|EFI56897.1| integrase family protein [Acidobacterium sp. MP5ACTX8] Length = 320 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 47/300 (15%), Positives = 90/300 (30%), Gaps = 43/300 (14%) Query: 67 KPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSG-----DFDYRKITTKHIR 120 K L + + ++ ++ G D D R + HIR Sbjct: 2 KRRNFHELAESFLAMMRDERGASEHTLRAYSREVRGFADFLGELLGEDADIRSVEHTHIR 61 Query: 121 SGVESRKHTPSS---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 + + + A + L ++R FKW + +V NP V PK R E Sbjct: 62 AYLAVLYDKGLTKASAARALAAVRSWFKWLAKSGFVEANPASLVSTPKLPKHLPRVPGME 121 Query: 178 DMQQFKSFWSEGS-------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 ++ + + S G+ + R+ FE L G+R S+ ++ + + +I Sbjct: 122 ELNRVLNSMSAGTKGEDGEEAATWPERDRVIFELLYGCGIRNSELVGLNLESIHWHDDAI 181 Query: 225 KTQKT-GTIITVELPDGFMKLLAMTPIGKE------------------TFFINNDKQKMN 265 + V L D + ++ ++ Sbjct: 182 RVFGKGKKERLVPLGDEAAAAIRAYLPQRQARLEAAGKAKLVHDGALLMNLRMRGACRLT 241 Query: 266 ATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 K A G+ + H +R T + GA + G + + + YT Sbjct: 242 TRSVGRIVKRIALSRGLAADVHPHTLRHAFGTHMLEEGADLRAIQEMLGHERLSTTQRYT 301 >gi|295101278|emb|CBK98823.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii L2-6] Length = 327 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 34/288 (11%), Positives = 80/288 (27%), Gaps = 14/288 (4%) Query: 48 MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107 A+ + P + + + + + + + +I G Sbjct: 26 RDAMAETLEGATITYDSGSIPADEADAVEAFITAKRIEGCSEKTLSYYRKTIEALIAGVG 85 Query: 108 DFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163 R+ITT +R R+ + + + F W ++++ +P + + Sbjct: 86 -KAVRQITTDDLRRYLTNYQVQRRSSKVTIDNIRRILSSFFSWLEDEDFIVKSPVRRIHK 144 Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223 K +T E ++ + + + + L SG+R + + + N Sbjct: 145 VKTAKVVKDTYTDEVLELMRDNCTTA-RDLAMIDLLASSGMRVGELVTLNREDINFNERE 203 Query: 224 IKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFI------NNDKQKMNATQFSIWFKAK 276 V L G+ ++ + Sbjct: 204 CVVIGKGNKERLVYFDARTKIHLQNYLEGRTDENPALFVSLKAPFDRLMIGGVETRLREL 263 Query: 277 ATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + + K H R+ AT + D G ++ G + +D Y Sbjct: 264 GKRLNIPKVHPHKFRRTLATTAIDKGMPIEQVQQLLGHQKIDTTMHYA 311 >gi|154251504|ref|YP_001412328.1| integrase family protein [Parvibaculum lavamentivorans DS-1] gi|154155454|gb|ABS62671.1| integrase family protein [Parvibaculum lavamentivorans DS-1] Length = 380 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 47/336 (13%), Positives = 99/336 (29%), Gaps = 30/336 (8%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN-SPRKKPTTLK 72 ++ G R+ R A+ + + E + RKKPTT Sbjct: 5 KKLPSGNWRVQVRRKG--RYIAETFRRHKEAEAWALDMERRIDQGEVPSSRTRKKPTTFG 62 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHT 129 LI + + + R S D + K G + + + + R Sbjct: 63 DLIDLHLAALQEVGRSP--RRSKAFTLDALKAKLGKVRMADLNRERLIRFGKERLKEGAG 120 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVA---------INPCLSVERPKRKTEGIRPWTKEDMQ 180 P + L+ ++ + A +A + R R T ++++ Sbjct: 121 PVTVGMDLSYIKTIITHAAAVHGIAVSPEAVDLARTALKHLGVVGRSRSRDRRPTADELK 180 Query: 181 QFKSFWSEGSQPRL----AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 + +++ + + F + + +R + CR + + ++ + + Sbjct: 181 RLIAYFDANPRQLIPLARIIRFAVATAMRQDEICRIRWGDIDADTRTVLIRDRKDPRETD 240 Query: 237 LPDGFMKLLAMTPIGKETFFINN--------DKQKMNATQFSIWFKAKATKAGVN-KSAH 287 D + LLA T NA F+ + H Sbjct: 241 GNDQKVPLLAATGFDAWAILREQKTAVAKGDRIFPYNARSVGTAFRRACRDLKIENLHFH 300 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 +R A+ +AG T ++ G + + YT Sbjct: 301 DLRHEGASRLFEAGFTIEQVALVTGHRDWKMLKRYT 336 >gi|258616485|ref|ZP_05714255.1| phage integrase family site specific recombinase [Enterococcus faecium DO] Length = 225 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 33/208 (15%), Positives = 65/208 (31%), Gaps = 19/208 (9%) Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQP 192 + S+R +++ +++E + NP V K+ R + + +MQ + Sbjct: 2 IASLRSFYQYLLKEEVIKENPFSYVHLKKKNLRLPRFFYENEMQALFDSVAGDSPLDLRN 61 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKLLA----- 246 R E L SG+R S+ V + + + K L L Sbjct: 62 RALLEVLYGSGIRLSECSSLSVSDIDFDSEVMLIHGKGNKERYAPLGSFAQDALQEYFRE 121 Query: 247 -------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATIS 297 + F+N+ + + T K+ ++ H +R AT Sbjct: 122 GRQVLMTKYHEEHDIVFVNHHGKPITPTGIEYVLNQMIKKSSLDSDIHPHMLRHTFATHL 181 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKG 325 + GA + G + + Y Sbjct: 182 LNNGADLRTVQELLGHANLSTTQIYAHV 209 >gi|158520653|ref|YP_001528523.1| integrase family protein [Desulfococcus oleovorans Hxd3] gi|158509479|gb|ABW66446.1| integrase family protein [Desulfococcus oleovorans Hxd3] Length = 397 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 55/348 (15%), Positives = 106/348 (30%), Gaps = 26/348 (7%) Query: 20 KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS-EY 78 Y HG + + + L + + +K+ TL +Y Sbjct: 48 NKTYKVTVKHGGKKKTKLVDNLDLAREIETKLKHDITRGTFHLQTQKQAPTLDAFWDKDY 107 Query: 79 RKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRS---------GVESR 126 + +E + + K G IT I + Sbjct: 108 LPWIRSNKKS-----WYEDAINYQTHLAPKLGQKRLDAITQLDIERLLSGLRKGTSKRGK 162 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + ++ + + +F A R +Y NPC + +P+ + T +++ + Sbjct: 163 PYAAATIKHQIVLLTRMFNVAARWGKYTGPNPCKLIAKPRLNNQKTGFLTDDELTRLLDV 222 Query: 186 --WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 FLL++GLR + R Q + + ++ + LP Sbjct: 223 LEQWPDRMSAGFIAFLLHTGLRRGELFRLTWQDVNMDRQTLTVRDPKGGRDTVLPLSEKA 282 Query: 244 L--LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISAD 299 + L P ET F+ + F + A + H +R A+ Sbjct: 283 IDALNSLPREHETPFVFYGRNGAQRADFRHPWYRIKQAAALPEGFRLHDLRHHFASALVS 342 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRI-RLGIKNSRRISSVVDSD 346 AG + + A K+ + Y +D+ R +K S +S SD Sbjct: 343 AGTNLYTVQALLTHKSAAMTQRYAHLSDQALRDAVKLSDDLSKKATSD 390 >gi|145593868|ref|YP_001158165.1| phage integrase family protein [Salinispora tropica CNB-440] gi|145303205|gb|ABP53787.1| phage integrase family protein [Salinispora tropica CNB-440] Length = 325 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 42/303 (13%), Positives = 95/303 (31%), Gaps = 38/303 (12%) Query: 73 WLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKH 128 ++ A + + ++ ++ + ++ + G +T IRS + ++ Sbjct: 20 EAADDFANHLAQVQNRSTHTVRAYVADVISLLDHAVRAGARTPADLTLAQIRSWLARQRT 79 Query: 129 TP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 T S+ + + R WA R + ++ + P+ E + Sbjct: 80 TGAARSTLARRSAAARTFSAWAHRDGRLPVDVAAGLASPRAHRELPAVLPVDQAAALLET 139 Query: 186 WSEGSQ------------------PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227 + +L E L +G+R S++C V + ++ Sbjct: 140 AHAAPRGQPTDDVPPGAADPVRLRDQLLLELLYATGVRVSEACGLNVADVDPGRRVLRVF 199 Query: 228 KTG-TIITVELPDGFMKLLAMTPIGKETFFINNDKQ----------KMNATQFSIWFKAK 276 G +V + L + ++N T Sbjct: 200 GKGGRERSVPYGVPAQRTLDAWLRHGRPRLVGAQSANALLLGARGGRLNPTTARGIVGRY 259 Query: 277 ATKAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIK 334 T AG+ ++ HG+R +AT + GA + G ++ + YT +R+R + Sbjct: 260 TTAAGLPRTSPHGLRHTAATHLLEGGADLRTVQELLGHSSLASTQIYTHVSVERLRSAYR 319 Query: 335 NSR 337 + Sbjct: 320 QAH 322 >gi|191166609|ref|ZP_03028438.1| integrase [Escherichia coli B7A] gi|190903414|gb|EDV63134.1| integrase [Escherichia coli B7A] Length = 357 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 61/345 (17%), Positives = 111/345 (32%), Gaps = 23/345 (6%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63 LPP + R+ Y G+ L A + + + Sbjct: 9 RRDLPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELLSDSGRKSLI 65 Query: 64 PRKK---PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 R K TL + Y + + + + + S I RK D I+TK + Sbjct: 66 DRIKGGDAITLHVWLDRYERILTERGIRPKTLLDYASKIRAIRRKLPDKPLTDISTKEVA 125 Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + + + +SA +++ +F+ A+ + +VA NP + K + R E Sbjct: 126 AMLNTYVAEGKAASAKLIRSTLVDVFREAIAEGHVATNPVTATRTAKSEVRRSRLTANEY 185 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 ++ + + RLA + + +G R D CR + +N I+ KTG + + L Sbjct: 186 VEIYHAAEPLPIWLRLAMDLAVVTGQRVGDLCRMKWSDINDNHLHIEQSKTGAKLAIPLT 245 Query: 239 DGFMKL---------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NK 284 L ET + ++ S +F +G+ Sbjct: 246 LTIDALNISLADTLQKCREASSSETIIASKHHDPLSPKTVSKYFTKARNASGLSFDGNPP 305 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + H +R SA G K+ A Y R Sbjct: 306 TFHELRSLSA-RLYRNQIGDKFAQRLLGHKSDSMAARYRDSRGRE 349 >gi|188587679|ref|YP_001921083.1| site-specific tyrosine recombinase XerC [Clostridium botulinum E3 str. Alaska E43] gi|188497960|gb|ACD51096.1| site-specific recombinase, phage integrase family [Clostridium botulinum E3 str. Alaska E43] Length = 329 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 42/295 (14%), Positives = 101/295 (34%), Gaps = 48/295 (16%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD----------------------YRKIT 115 Y ++ + + N+ +++ R + + I Sbjct: 23 YLETI--KNKSSNTIAAYKKDLTIFFRFMKLYRGIVKDKKIEFEDIDITDIDDEFLKSIQ 80 Query: 116 TKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEG 170 + + + + + R ++ + + + +++ FK+ + + + NP +E PK Sbjct: 81 LRDLYAFMSFIEKYRNNSTYARARKVATLKSYFKFLQGKAKIIVDNPTTELESPKINKRQ 140 Query: 171 IRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226 T + S + + + L G+R S+ C ++ ++N+I +I Sbjct: 141 PVYLTLDQSIHLLSSLDKNNKNYARDYCILTLFLNCGMRLSELCGISIEKIRNDILAIIG 200 Query: 227 QKTGTIITVELPDGFMKLLAMTPI----------GKETFFINNDKQKMNATQFSIWFKAK 276 + TV L + +K + K+ F+++ + +N I K Sbjct: 201 KGN-KERTVYLNEACLKSIENYMRIRDDSKALPEYKKFLFLSSHNKPINQRTVEIMIKKH 259 Query: 277 ATKAGV---NKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD 327 AG+ + H +R +AT+ G L G + + + YT + Sbjct: 260 VKNAGLTDAKYTPHKLRHTAATLMYKYGDVDIRSLQNILGHENISTTQIYTHVDN 314 >gi|237722727|ref|ZP_04553208.1| bacteriophage integrase [Bacteroides sp. 2_2_4] gi|293373708|ref|ZP_06620055.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|317473968|ref|ZP_07933247.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] gi|229448537|gb|EEO54328.1| bacteriophage integrase [Bacteroides sp. 2_2_4] gi|292631363|gb|EFF49994.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|316909810|gb|EFV31485.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] Length = 380 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 56/324 (17%), Positives = 111/324 (34%), Gaps = 29/324 (8%) Query: 26 RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85 R+ + + +R + A ++A G+ P+ + L ++ RK+ Sbjct: 56 RRQNAQTLRKAEDIQRERTEALLNAKVGTVPE------SKSSDMLLSDWMTIVRKNHEHR 109 Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK----------HTPSSAIQ 135 ++ +++ D + + ++ + TP +A Sbjct: 110 E--ARDLNGIDNARKNLLKFRADVRLCDVDRQFYIDYIDWLRSSCKTAWGKQITPKTAHS 167 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVER---PKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 + T++R AVR+ + NP +E K T E++++ + Q Sbjct: 168 YYTTLRTALNEAVRERLIESNPWYKLEMTEKIKVPESKRDFLTIEEIKKMIATPFFNEQV 227 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI----KTQKTGTIITVELPDGFMKLLAMT 248 R A+ F + GLR SD + + + + KT + + L +K L Sbjct: 228 RQAYLFSCFCGLRISDIRKLRWRDISISGGQWLVSVVMTKTTNPVYIPLSSQAVKWLPER 287 Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHE 306 + + S K A KAGV K + H R A + GA + Sbjct: 288 NGCTPDGLVFGGLPNTSNLCVS--LKNWADKAGVKKNVTFHTARHSCAVLLLTLGADIYT 345 Query: 307 LMATYGWKTVDQAETYTKGADRIR 330 + G ++V + Y K D+ + Sbjct: 346 VSKILGHRSVRATQVYAKIVDKKK 369 >gi|149916988|ref|ZP_01905489.1| Phage integrase [Plesiocystis pacifica SIR-1] gi|149822266|gb|EDM81657.1| Phage integrase [Plesiocystis pacifica SIR-1] Length = 421 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 42/357 (11%), Positives = 93/357 (26%), Gaps = 60/357 (16%) Query: 27 KGHGRRIRLPYP-HESTFIPAYMSALTGSTPKR--------------EYINSPRKKPTTL 71 G +R+R P A+ P+ P TL Sbjct: 10 DGRTKRVRKVSPVQTKRAAQAFERETRAELMAGLFDEENNHGPNGSGRRKAKPQAVP-TL 68 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR---- 126 E+ + S S ++ GD +I + I + Sbjct: 69 AEFAPEFMAYQATLN-KATELASKRSSLKNHLLPVFGDLRLDQIDARAIDRYKMRKLSPE 127 Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 P + L + + A + + P +E + + Sbjct: 128 HAATVASTRRRAGEGLKPKTINNHLMVLSRALRVAQKWGVLDRVP--EIELLRVTKQPFD 185 Query: 173 PWTKEDMQQFKSFWSEG-SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG- 230 E+ +++ + E + +GLR + +H++ +++ + + Sbjct: 186 FLDFEEAERYLAAAREHYPDWHVFVLVAARTGLRVGELLALQWKHVRLAGRTLRVELSYT 245 Query: 231 -----------TIITVELPDGFMKLLAMTPI--------GKETFFINNDKQKMNATQFSI 271 V L + L + F N D ++ + Sbjct: 246 RAGGVSSPKSGKAREVPLTWDVARALEVHREVLGAKARARDALVFPNADGERGSLRSVGH 305 Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 + A A + + H +R A+ + G + G +++ Y A+ Sbjct: 306 FVSRIAKAAKLRHVHPHMLRHTFASHAVMRGVPMRVVQEWLGHASIEMTMRYAHLAE 362 >gi|163853685|ref|YP_001641728.1| tyrosine recombinase XerC [Methylobacterium extorquens PA1] gi|240141109|ref|YP_002965589.1| ptyrosine recombinase xerC, integrase/recombinase Ripx (xerC) [Methylobacterium extorquens AM1] gi|163665290|gb|ABY32657.1| tyrosine recombinase XerC [Methylobacterium extorquens PA1] gi|240011086|gb|ACS42312.1| ptyrosine recombinase xerC, integrase/recombinase Ripx (xerC) [Methylobacterium extorquens AM1] Length = 365 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 44/293 (15%), Positives = 90/293 (30%), Gaps = 32/293 (10%) Query: 71 LKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSG 122 L+ + +R++ A +A N+ ++E Q + + + +R+ Sbjct: 23 LRAAMRGWREALARERRMAANTVEAYERDLRQFLIHRAARSGTPTIAGLIALKPRDLRAF 82 Query: 123 VESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT---- 175 + +R+ S ++ L +R ++ R+ + ++ +V PK + RP Sbjct: 83 MAARRAEGIGGRSLMRMLAGLRSFARFLEREGHGSVAALGAVRSPKVERRLPRPLPISAA 142 Query: 176 -----KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCR--AGVQHLQNNIFSIKTQK 228 E ++ L SGLR S++ A + T K Sbjct: 143 LAMTAPETRPDDDRAPWVLARDAAVIALLYGSGLRISEALGLTARDAPMPGIDEVRVTGK 202 Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAG 281 G + V + + +A ++ A G Sbjct: 203 GGKVRAVPVLPAVAEAVAAYLSLCPHPLDPEGPLFVGVKGGPLSPRVVQYAVSALRGALG 262 Query: 282 VN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 + + H +R AT + G ++ + YTK D RL Sbjct: 263 LPESATPHALRHSFATHLLARRGELRAIQELLGHASLSTTQIYTK-VDAARLM 314 >gi|310828816|ref|YP_003961173.1| phage integrase family site specific recombinase [Eubacterium limosum KIST612] gi|308740550|gb|ADO38210.1| phage integrase family site specific recombinase [Eubacterium limosum KIST612] Length = 379 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 43/358 (12%), Positives = 95/358 (26%), Gaps = 47/358 (13%) Query: 12 TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 +++ ++G I Y++R H + T + S + Sbjct: 6 YRKKIKNGTIYYFYRLRHKNLRTPRDLYGRTVTELEDKIRRLKNELDRGVTSEKAY---F 62 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKHT 129 + ++ H + ++ ++ F++ + + + +T I+ Sbjct: 63 GDYMEKWLNDVHLNNKKQATKTKYKGLFERYVLPYPVANIQLKDLTALDIQEHYSKLVSD 122 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---------ERPKRKTEGIRPWTKEDMQ 180 S L ++ V+ +R + + ++ + K+ DM+ Sbjct: 123 GIS-KPTLKTLSVVINPCIRYAFTQGKILIDFSRSIVLPEAKKKQEKSRRASQALSLDME 181 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII------- 233 G++ + L SGLR + + I KT Sbjct: 182 NALIKACAGTKWEVFILTDLNSGLRRGEIMALTWDDIDLEKGIIDVNKTYDQRNKDQPIG 241 Query: 234 -----------------------TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS 270 + LL+ F N+ M AT Sbjct: 242 PPKTENSIRQVPIPRFLAEKLKQHKVEQNKRRLLLSNKYKNLNLVFPNDFGNYMAATTVG 301 Query: 271 IWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGA 326 A + G+ + H R AT + + + G + YT + Sbjct: 302 RALIDFAKEIGLESLNLHDFRDTYATRLYEKTKDIKMVQSLLGHSDIATTANIYTHVS 359 >gi|296450797|ref|ZP_06892548.1| integrase/recombinase [Clostridium difficile NAP08] gi|296260358|gb|EFH07202.1| integrase/recombinase [Clostridium difficile NAP08] Length = 280 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 32/265 (12%), Positives = 85/265 (32%), Gaps = 18/265 (6%) Query: 81 SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHTPSSAIQFL 137 +A +L ++ ++ + +G ++++T + P + + Sbjct: 12 AAQKKNLKESTTKAYCHALSPFLNATG-KPWQELTVADADDYLTTKRRMGILPETYNHYY 70 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197 ++R ++K ++ + ++E++ + + + F Sbjct: 71 GALRFMYKRVLKLNWDEDEIPRMKRD----RSLPTVLSREEVNAILDVTT-NLKYKAIFA 125 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255 + GLR S++ + + I+ K L D + +L + Sbjct: 126 VMYSGGLRVSEATHLHYDDISRSNHSIHIRNTKNRMDRYTILADRTLDILTQYWFQCQRP 185 Query: 256 FINNDKQKMNA-----TQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELM 308 + + + + + +AG+ K ++H R A+ + G + Sbjct: 186 RNILFPSQTTGEYLDISAVNQVLRRSSERAGIPKHVTSHAFRHSFASHLLEDGCDIKYIQ 245 Query: 309 ATYGWKTVDQAETYTKGADRIRLGI 333 A G E Y +++ LGI Sbjct: 246 ALLGHLDPKSTEIYLHVSNKTLLGI 270 >gi|319936293|ref|ZP_08010711.1| integrase/recombinase XerC [Coprobacillus sp. 29_1] gi|319808669|gb|EFW05213.1| integrase/recombinase XerC [Coprobacillus sp. 29_1] Length = 365 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 51/347 (14%), Positives = 107/347 (30%), Gaps = 42/347 (12%) Query: 10 FVTKERTRHGKIIYYFRKGHGR----RIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65 V K++ + R + + R+ + + + Sbjct: 2 GVYKDKKTN-TWYVSKRYINWKGENCRLFKRNFTTKREAQNF--------ERSYFEKLQG 52 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124 T I Y L +N+ + ++ + +I DF +IT HI Sbjct: 53 NLNMTFDDFIEVYFDDKK-QRLKLNTFLMKQNVINTKIRPYFKDFKMCEITPNHILKWQN 111 Query: 125 SR---------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP-KRKTEGIRPW 174 K+T S+ + +F AV+ + NP V + W Sbjct: 112 DMMKQHHKKGEKYTSSTLKTMHAQLSAIFNHAVKYYRLDKNPARIVGTMGSEDEIEMLFW 171 Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-- 232 T E+ ++F + +AFE L ++G+R + ++ + + ++ K+ Sbjct: 172 TTEEYKKFAFEIMDNPISYMAFEMLYWTGIREGELLALTLEDIDFDKCKLRINKSYQRLQ 231 Query: 233 --------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278 V++PD + + G + +N + K Sbjct: 232 GEDVITTPKTSKSNRVVDIPDFLVDEVKDYVAGLPGLKKTDRMFPINKSFLYREMKRGCK 291 Query: 279 KAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 A V K H +R ++ + G +A + G +++ Y Sbjct: 292 AADVKKIRVHDLRHSHVSLLIEKGFSALAIADRVGHESIHITYKYAH 338 >gi|302670606|ref|YP_003830566.1| tyrosine recombinase XerD [Butyrivibrio proteoclasticus B316] gi|302395079|gb|ADL33984.1| tyrosine recombinase XerD [Butyrivibrio proteoclasticus B316] Length = 292 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 42/288 (14%), Positives = 101/288 (35%), Gaps = 22/288 (7%) Query: 72 KWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR- 126 LI + + N+ S+ +++ G IT + + S Sbjct: 2 DQLIDAFCLYLETVKKASANTISSYRRDLNRMASHMSNRGITSIADITDDRLHGYISSMQ 61 Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ---- 180 SS I+ ++S+R F++ + + NP ++ PK R T +++ Sbjct: 62 EEHCAGSSIIRSVSSIRAFFRYLLENGNIQDNPAENIRTPKAARSAPRIMTSYEIEALLS 121 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------T 231 Q + G + + E + +GLR ++ ++++ ++ I+ + Sbjct: 122 QTFPNDALGKRDKAILELMYATGLRTTELVELELENIDMSLNCIRLGENRVIPYGKKAKE 181 Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGV 289 + L ++L+ + F+N M+ K +AG++ + + + Sbjct: 182 ALNEYLLFARDEILSDNSASLQKVFVNYMGNPMSRQGLWKLIKTYVKRAGIDADITPYSL 241 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 R ++GA + + G + Y K + + + +R Sbjct: 242 RHSFTMHLIESGADINAVQDMMGLSGLSALSQYRKAKGKNKDPYEWAR 289 >gi|239813909|ref|YP_002942819.1| integrase family protein [Variovorax paradoxus S110] gi|239800486|gb|ACS17553.1| integrase family protein [Variovorax paradoxus S110] Length = 356 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 41/298 (13%), Positives = 83/298 (27%), Gaps = 40/298 (13%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHT- 129 + +Y + LA + + + + + ++ T HIR + Sbjct: 12 WVDKYLEHVRVERRLAARTVELYAIHLQALAANAAEAGLPLDRVQTAHIRRWMAQLHGAG 71 Query: 130 --PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM------QQ 181 P L+ R ++W + V NP V PK + +D Sbjct: 72 REPRGIALVLSCWRSFYRWLGNEGLVGFNPVKDVHAPKAARPLPKALAVDDAVRLAELYD 131 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--------IKTQKTGTII 233 ++ ++ E L GLR S+ + K Sbjct: 132 PEADPWTEARDGAIVEVLYGCGLRVSELTGLDARASNTARGWVDLDALEANVLGKGSKRR 191 Query: 234 TVELPDGFMKLLAMTPIGKETF-----------------FINNDKQKMNATQFSIWFKAK 276 V + + L + FI+ +M++ + + Sbjct: 192 IVPIGSKAAEALRDWFAVRGECAALSTAALRDPAGAAALFISAKGVRMSSQAVWKLLRER 251 Query: 277 ATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 + KAG+ H +R A+ + + + G + + YT+ D L Sbjct: 252 SLKAGLAAPVHPHMLRHSFASHVLQSSSDLRAVQELLGHANIATTQVYTR-LDFQHLA 308 >gi|218690783|ref|YP_002398995.1| Integrase [Escherichia coli ED1a] gi|218428347|emb|CAR09275.2| Integrase [Escherichia coli ED1a] Length = 338 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 50/339 (14%), Positives = 97/339 (28%), Gaps = 47/339 (13%) Query: 14 ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + +GK + Y +G+R+R A+ S K+ ++ + L Sbjct: 4 RKQPNGKWLCECYPNGRNGKRVR-KQFATKGEAIAFESFTMEEVNKKPWLGEKEDRRH-L 61 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESY---FDQIIRKSGDFDYRKITTKHIRSGVESR-- 126 LI ++ SL + + I GD ++T E+R Sbjct: 62 SELIEQWY------SLYGQTLADPKRLIAKLRIICNGLGDPIASELTAGDFTKYREARLK 115 Query: 127 ------------KHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRP 173 P + ++ +F + + A NP + K + Sbjct: 116 GEVRNEDGTFMSPVKPRTVNLEQRNLSSVFGTLKKLGHWSAPNPLAGLPTFKIAESELAF 175 Query: 174 WTKEDMQQFKSFWSEG--SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 T E++++ ++ S L + L +G R S++ + + K Sbjct: 176 LTPEEIKRLLDACADSQSSSLLLIAKICLATGARWSEAENLQSHQVSKYRITYTKTKGKK 235 Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK----SAH 287 TV + + L T F+ +AG++ H Sbjct: 236 NRTVPISKDLYEELPKNRGKLFTPC-------------RKAFERAVKRAGIDLPEGQCTH 282 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 +R A+ G L G + Y A Sbjct: 283 VLRHTFASHFMMNGGNILVLRDILGHSDIKMTMVYAHFA 321 >gi|169825072|ref|YP_001692683.1| putative integrase [Finegoldia magna ATCC 29328] gi|167831877|dbj|BAG08793.1| putative integrase [Finegoldia magna ATCC 29328] Length = 327 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 40/294 (13%), Positives = 89/294 (30%), Gaps = 14/294 (4%) Query: 42 TFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ 101 + L + +E + S + T + L+ + + + S + + + Sbjct: 20 AQLQKLEQILEHALLDKEIVESYSVQEDTSEDLLENFLSAKRIEGCSEKSLVYYRNTIQA 79 Query: 102 IIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP 157 + K + R+I T +R + + + + F W ++Y+ +P Sbjct: 80 MRDKV-EKPVREIETNDLREYLTGYQKEKNSSKVTIDNIRRIFSSFFSWLEDEDYIIKSP 138 Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217 + R K T ++ E+++ + SE + + L +G+R + + + Sbjct: 139 VRRIHRVKSATTIKETYSDENLETMRDSCSE-LRDLALIDILASTGMRIGELVHLNRKDI 197 Query: 218 QNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFI------NNDKQKMNATQFS 270 V L ++ +M Sbjct: 198 NFEERECVVFGKGSKERMVYFDARTKIHLQEYLNSRKDDNPALFVSLKAPYDRMKIGGIE 257 Query: 271 IWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + G+ K H R+ AT++ D G +L G K +D Y Sbjct: 258 ARLRGIGRNLGIEKVHPHKFRRTLATMAIDKGMPIEQLQQLLGHKRIDTTLQYA 311 >gi|323175010|gb|EFZ60625.1| integrase [Escherichia coli LT-68] Length = 330 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 49/317 (15%), Positives = 101/317 (31%), Gaps = 21/317 (6%) Query: 14 ERTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 ++ + G+ R G+RIR + + + + + + P + L Sbjct: 4 KQLKDGRYQVDVRPQGAEGKRIR-KIFTLKSKAQEFEKYVLQNFHDKPWQAKPADQRR-L 61 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT-- 129 L+ + S+ ++IR+ GD +T K + + Sbjct: 62 SELLDAWW---MLDGRNQAYGDSYRVRLGKVIREMGDPRASHMTRKFMLEYRSEKLQAGL 118 Query: 130 -PSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 PSS + L + +F + + + NP + + K + + + ++++Q Sbjct: 119 MPSSINRDLCVLSTMFTVLIEAEVFHNANPVRGIRKLKVQNTEMAFLSDDEIEQLLER-- 176 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247 R L +G R ++ +H+ N + K G +V + D + L+ Sbjct: 177 LEGDARRVAILCLSTGARWREASELRGEHIVGNRVTFFNTKNGKSRSVPVADSVVPLIKT 236 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307 G + F + ++ H +R AT G L Sbjct: 237 RRTGLLYQVDYLE--------FREILQEVKPDLPKGQATHVMRHTFATHFMMNGGNIVTL 288 Query: 308 MATYGWKTVDQAETYTK 324 G T+ Q TY Sbjct: 289 QRILGHATIQQTMTYAH 305 >gi|237711591|ref|ZP_04542072.1| integrase [Bacteroides sp. 9_1_42FAA] gi|229454286|gb|EEO60007.1| integrase [Bacteroides sp. 9_1_42FAA] Length = 380 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 53/309 (17%), Positives = 101/309 (32%), Gaps = 23/309 (7%) Query: 41 STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD 100 K E + + L ++ RK+ ++ Sbjct: 65 KAEDIQRERTEALLKAKVEAVPENKSSDMLLSDWLAIVRKNHEHRG--ARDLNGIDNARK 122 Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRK----------HTPSSAIQFLTSMRVLFKWAVRQ 150 +++ D R + + ++ + +P +A + T++R AVR+ Sbjct: 123 NLLKFRADARLRDLDKQFYLDYIDWLRSSCKTAWGKPVSPKTAHSYYTTLRTALNEAVRE 182 Query: 151 EYVAINPCLSVER---PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCS 207 + + NP +E K T E++++ + R A+ F + GLR S Sbjct: 183 KLIESNPWYKLEMTEKIKVPESKRDFLTIEEIKKMIATPFFNEHVRQAYLFSCFCGLRIS 242 Query: 208 DSCRAGVQHLQNNIFSI----KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK 263 D + + + + KT + + L +K L + Sbjct: 243 DIRKLRWRDISISGGQWLVSVVMTKTTNPVYIPLSSQAVKWLPERKDCAPEDLVFGGLP- 301 Query: 264 MNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321 NA I K A KAGV K + H R A + GA + + G ++V + Sbjct: 302 -NAGNLCISLKNWADKAGVKKNVTFHTARHSCAVLLLTLGADIYTVSKILGHRSVRATQV 360 Query: 322 YTKGADRIR 330 Y K D+ + Sbjct: 361 YAKIVDKKK 369 >gi|262204532|ref|YP_003275740.1| integrase family protein [Gordonia bronchialis DSM 43247] gi|262087879|gb|ACY23847.1| integrase family protein [Gordonia bronchialis DSM 43247] Length = 608 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 47/285 (16%), Positives = 82/285 (28%), Gaps = 32/285 (11%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRKHT 129 Y + SL N+ E + D ++ HI + T Sbjct: 215 ARRYIEQVTL-SLRPNTVTGIEHDLRRFGSWLTDTHPQIANCAELQRVHIEEFKKWLSTT 273 Query: 130 PS----------SAIQFLTSMRVLFKWAVRQEYVA---INPCLSVERPKRKTEGIRPWTK 176 P+ S L ++ F +Y + P R Sbjct: 274 PTPRTGKPLNRGSIKNALINLHCFFDRITDWDYPNAPVRPLVFIGDLPIIDKPLPRFLDD 333 Query: 177 EDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQN----NIFSIKTQKTG 230 + + P RL E L +G+R S+ + I K Sbjct: 334 GAATKLLRAARADTDPLSRLIVELLARTGIRISELLGLTTDAVVQIGTAFWLRIPLGKMH 393 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINN------DKQKMNATQFSIWFKAKATKAGV-N 283 + L +LL I + + + + + + A AG+ + Sbjct: 394 NDRYIPLHPQLKELLDDWIDNHRPTGIRTSRLLVENHRPITSHRVTAALDRHAEAAGIGH 453 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 +AH +R AT + + G + + A G KT+ Y + ADR Sbjct: 454 VTAHQLRHTLATQAINRGMSLDAIAALLGHKTLAMTMVYARIADR 498 >gi|187932650|ref|YP_001885119.1| prophage LambdaBa04, site-specific recombinase, phage integrase family [Clostridium botulinum B str. Eklund 17B] gi|187720803|gb|ACD22024.1| prophage LambdaBa04, site-specific recombinase, phage integrase family [Clostridium botulinum B str. Eklund 17B] Length = 386 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 48/378 (12%), Positives = 109/378 (28%), Gaps = 55/378 (14%) Query: 15 RTRHGKIIY-YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 R + Y Y+ +G + ++ T A + + P+ LK Sbjct: 6 RKKGNVWYYRYYEYVNGVKKQIERKGGITKKEALQKLNEEIYRQNNGLLKPK--EILLKD 63 Query: 74 LISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTP-- 130 + + + + + N+ I ++ I + G + +I + K T Sbjct: 64 YLKIWLEDYVKPNNSENTYIKYKGTVNKYINPQLGLIKLCDLKVINIEQFLSKLKKTKLS 123 Query: 131 -SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---- 185 ++ + + A++ + + NPC V+ PKR T E++ + Sbjct: 124 LTTIQKHYLVLNGALNKAIKLQMLNDNPCKYVDTPKRSKYKASILTFEELHSIYTNLNTK 183 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----------------QNNIFSIKTQKT 229 E +L + + +GLR + C + N+ + Sbjct: 184 IYEDYIMKLGMDLTIETGLRRGEMCGLQWSDIDFDNKILNVNTALIRVNNDYKISNLKTD 243 Query: 230 GTIITVELPDGFMKLLAMTPIGKETF------------------------FINNDKQKMN 265 + + L + +K+L + F + + + Sbjct: 244 SSYRKLPLSNEIIKILKSHKSKQNINKIKYGNNFVYSNKFDGDSTEYNLIFTWENGRYII 303 Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETY 322 + F K + K H +R +ATI + + G + + Y Sbjct: 304 PSNFLQRLKRLCKYCKIEKNIRWHDLRHSNATILLKNKISMKVIQERLGHSLMQTTSDIY 363 Query: 323 TKGADRI-RLGIKNSRRI 339 + + R + Sbjct: 364 AHVTEEMNREATDVISNV 381 >gi|170723132|ref|YP_001750820.1| integrase family protein [Pseudomonas putida W619] gi|169761135|gb|ACA74451.1| integrase family protein [Pseudomonas putida W619] Length = 340 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 53/330 (16%), Positives = 108/330 (32%), Gaps = 14/330 (4%) Query: 2 TPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61 PS+R + R R+ + + + + G + ++ Sbjct: 7 PPSVRYHSAMAYYEKRGDAWRAQIRRKGYPTLS-ATFDTKAEAQRWAAEIEGDMSRARFV 65 Query: 62 NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121 + + TTL + Y + S ++ K I + + + Sbjct: 66 DMREAESTTLDEALDRYL--SEVTSTKKGAKQEQVRIKKWKEHKLASKGLAAIRSSDMAA 123 Query: 122 GVE---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTK 176 + + ++ L + LF A ++ + NPC ++ PK E R T Sbjct: 124 YRDAELKEGKSTATVRLNLAVISHLFTVATKEWGIEGLTNPCRAIRMPKGSKERDRRPTP 183 Query: 177 EDMQQ-FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 ++ +K+ +Q + E + + +R S+ H++ + ++ K G V Sbjct: 184 AELTALYKAAGQMNAQLPVFIELAVETAMRRSELLMLRRDHVRGKVAYLEDTKNGERRAV 243 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSA 294 L + LL P N S +F AG+ H +R + Sbjct: 244 PLSSRAIALLEGLPTPIGGGRYFNLAL----NTISNYFPRACAAAGIEGLRLHDLRHEAT 299 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324 + + G T E+ + G KT+ + YT Sbjct: 300 SRFFERGFTMMEVASITGHKTLAMLKRYTH 329 >gi|118592686|ref|ZP_01550076.1| Integrase [Stappia aggregata IAM 12614] gi|118593369|ref|ZP_01550753.1| Integrase [Stappia aggregata IAM 12614] gi|118593930|ref|ZP_01551286.1| Integrase [Stappia aggregata IAM 12614] gi|118433470|gb|EAV40141.1| Integrase [Stappia aggregata IAM 12614] gi|118434047|gb|EAV40704.1| Integrase [Stappia aggregata IAM 12614] gi|118434737|gb|EAV41388.1| Integrase [Stappia aggregata IAM 12614] Length = 287 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 41/278 (14%), Positives = 90/278 (32%), Gaps = 18/278 (6%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS- 132 L + +L+ ++ S+ + R G ++ + +R+ T S Sbjct: 8 LRRRMIEDMTVRNLSPATQRSYLHAVSKFSRYFGRSP-DRLGLEDVRAFQVHLVATGISW 66 Query: 133 --AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 Q + ++R + + Q + + + + +++ +F Sbjct: 67 PALNQTVCALRFFYGVTLGQAEIPERIA----YARAPRKLPEVLSADEVVRFLEAV-PSL 121 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMT 248 + R A +GLR S+ V + + I+ K G V L + +L Sbjct: 122 KTRTALTAAYAAGLRVSEVVGLKVADIDSQRGVIRIRHGKGGKDRYVMLSAQLLHILRTY 181 Query: 249 PIGKETFFINNDKQ----KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302 ++ ++ T ++ AG++K + H +R AT + G Sbjct: 182 WRLARPPDWLFPRRNGSGPISITVLHAACRSARAAAGIDKRVTVHTLRHSFATHLLENGT 241 Query: 303 TAHELMATYGWKTVDQAETYTKGADRI-RLGIKNSRRI 339 + G + YTK + R+ R R+ Sbjct: 242 DIRIIQVLLGHNNLSSTARYTKVSSRLIRRTQSPLDRL 279 >gi|310823396|ref|YP_003955754.1| phage integrase [Stigmatella aurantiaca DW4/3-1] gi|309396468|gb|ADO73927.1| phage integrase [Stigmatella aurantiaca DW4/3-1] Length = 385 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 49/360 (13%), Positives = 100/360 (27%), Gaps = 55/360 (15%) Query: 25 FRKGHGRRIRLPYPH---ESTFIPAYMSALTGSTPKREYINSPRKK-PTTLKWLISEYRK 80 F+ GR R+ Y L + Y + + TL + + Sbjct: 5 FQHADGREERVTKVSPVQTRRGAEQYERELRNALLNGTYGKEKKSEGRVTLAEFSARFLT 64 Query: 81 SAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPS-------- 131 + + +S I+ + I+ G+ +I I + S Sbjct: 65 YSENNN-KPSSAITKQQILRDHILPFFGEMALVRIGPAEIEDFKALMRKKKSASRARKED 123 Query: 132 --------------------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 + L+++ L A Q+ + + K Sbjct: 124 ATRAAIGKRKDGEAKPLSLKTINNVLSALSKLLNLAEEQKVIKQ---APRVKLFGKLPKP 180 Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 + + + + + R L +GLR + L + + ++T Sbjct: 181 KFDFLTFEEAGRLIDAAEPEWRTLMLVALKTGLRQGELIGLQWADLDLSRGMVTVRRTIW 240 Query: 232 I-----------ITVELPDGFMKLLAMTPI-GKETFFINNDKQKMNATQFSIWFKAKATK 279 TV+LP ++ L F +D Q + A + + + Sbjct: 241 RGVTDLPKGGRERTVDLPASAVEALKAHRHLRGRFVFCQDDGQPLTAGKTAQPLRRALKM 300 Query: 280 AGVNK-----SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGI 333 A + + H +R A+ A G + G T++ E Y + D R + Sbjct: 301 ADIGREEGRIGWHDLRHTYASHLAMKGIPLKVIQELMGHVTIEMTERYAHLSPDTRREAV 360 >gi|307822732|ref|ZP_07652963.1| integrase family protein [Methylobacter tundripaludum SV96] gi|307736336|gb|EFO07182.1| integrase family protein [Methylobacter tundripaludum SV96] Length = 340 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 43/317 (13%), Positives = 87/317 (27%), Gaps = 17/317 (5%) Query: 16 TRHGKIIYYFRKGHGRRIR-LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 R F GRRI+ L + +Y+ + K K Sbjct: 5 KRKDTWWIQFTAPDGRRIQQTAGTQLKDEAQELHDRLKADAWRVKYLGA--KPRYFWKDA 62 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPS 131 + + S + + + + + D +I I +R + S Sbjct: 63 VIRWLTEQGHKK----SIETDKVHLRWLDKHLSDVYLDEINKLKIDLIKNARLADGVSNS 118 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 + + L+ +R + + ++ I+ +R T+++ + E Sbjct: 119 TVNRLLSILRAILN-RAKDDWEWIDSVPGFRFLPEPAGRVRWITRDESVRLIEELPE--H 175 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMTPI 250 + F L +GLR S+ + L + Sbjct: 176 LKFMVRFALATGLRESNVTHLQWSQIDIQRRCAWVLADQAKAGKAIAVPLNDDALDVIAS 235 Query: 251 GKETFFINNDKQKMN--ATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHEL 307 + K N + F+ +AG++ H +R A+ +G H L Sbjct: 236 QVGKHDVRVFTYKGNVVNDGNTKSFRKALKRAGIDDFRWHDLRHTWASWHVQSGTPLHVL 295 Query: 308 MATYGWKTVDQAETYTK 324 GW + Y Sbjct: 296 KELGGWADISMVLRYAH 312 >gi|300741219|ref|ZP_07071240.1| tyrosine recombinase XerD [Rothia dentocariosa M567] gi|300380404|gb|EFJ76966.1| tyrosine recombinase XerD [Rothia dentocariosa M567] Length = 320 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 38/237 (16%), Positives = 72/237 (30%), Gaps = 31/237 (13%) Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 R P+S + + ++R + + +P +V+ PK + + E M Sbjct: 64 RDVTLPLPLGPNSIARTMAAVRGAHSFWHASRILETDPAAAVKPPKNVKRLPKAVSVEQM 123 Query: 180 QQFKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----- 230 Q+ + G + R EFL +G R S+ + + Sbjct: 124 QKLLAIPSLKTPTGLRNRAILEFLYATGARVSEMLATDLDDIHLGEKPRDENGEFIAVPG 183 Query: 231 ---------TIITVELPDGFMKLLAMTPIGKETFFINN-----------DKQKMNATQFS 270 V L + L + F ++ ++ Sbjct: 184 YVRLFGKGGKERLVPLGSYAQRALEDYIVRARPKFASHGKGTAALFLNGRGSRLGRQGAW 243 Query: 271 IWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 + K A +AG+ + S H +R AT GA + G ++ + YTK Sbjct: 244 LILKETAEEAGLSSDFSPHSIRHSFATHLVQGGADIRVVQELLGHASIATTQVYTKV 300 >gi|262202503|ref|YP_003273711.1| integrase family protein [Gordonia bronchialis DSM 43247] gi|262202582|ref|YP_003273790.1| integrase family protein [Gordonia bronchialis DSM 43247] gi|262085850|gb|ACY21818.1| integrase family protein [Gordonia bronchialis DSM 43247] gi|262085929|gb|ACY21897.1| integrase family protein [Gordonia bronchialis DSM 43247] Length = 608 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 47/285 (16%), Positives = 82/285 (28%), Gaps = 32/285 (11%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRKHT 129 Y + SL N+ E + D ++ HI + T Sbjct: 215 ARRYIEQVTL-SLRPNTVTGIEHDLRRFGSWLTDTHPQIANCAELQRVHIEEFKKWLSTT 273 Query: 130 PS----------SAIQFLTSMRVLFKWAVRQEYVA---INPCLSVERPKRKTEGIRPWTK 176 P+ S L ++ F +Y + P R Sbjct: 274 PTPRTGKPLNRVSIKNALINLHCFFDRITDWDYPNAPVRPLVFIGDLPIIDKPLPRFLDD 333 Query: 177 EDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQN----NIFSIKTQKTG 230 + + P RL E L +G+R S+ + I K Sbjct: 334 GAATKLLRAARADTDPLSRLIVELLARTGIRISELLGLTTDAVVQIGTAFWLRIPLGKMH 393 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINN------DKQKMNATQFSIWFKAKATKAGV-N 283 + L +LL I + + + + + + A AG+ + Sbjct: 394 NDRYIPLHPQLKELLDDWIDNHRPTGIRTSRLLVENHRPITSHRVTAALDRHAEAAGIGH 453 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 +AH +R AT + + G + + A G KT+ Y + ADR Sbjct: 454 VTAHQLRHTLATQAINRGMSLDAIAALLGHKTLAMTMVYARIADR 498 >gi|160934339|ref|ZP_02081726.1| hypothetical protein CLOLEP_03210 [Clostridium leptum DSM 753] gi|156867012|gb|EDO60384.1| hypothetical protein CLOLEP_03210 [Clostridium leptum DSM 753] Length = 363 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 50/362 (13%), Positives = 106/362 (29%), Gaps = 43/362 (11%) Query: 18 HGKIIY---YFRKGHGRRIR-LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 +G Y R+ + + + + + + + Sbjct: 9 NGTWYVMARYVNWKGERKQKCKRGFTTKKEAQEW--------ERMFQLQNSSDLDMSFEA 60 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR------ 126 Y + L N+ ++ E +I+ G +I+TK I + Sbjct: 61 FTELYIRDVKNR-LKENTWLTKEHIIRTKILPFFGKLKISEISTKEIITWQNEMLAYRDE 119 Query: 127 KHTPSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQF 182 K P S + +F AVR + NP V + WTKE+ ++F Sbjct: 120 KKKPYSQTYLKTLHNQLSAIFNHAVRYYELRSNPAAKVGNMGSEEHREMLFWTKEEYKKF 179 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------- 232 + AFE L + G+R + + ++ K+ Sbjct: 180 AFEMMDKPVSFYAFEMLYWCGIREGELLALTPADFDFDKETVTINKSYQRLHGEDVITTP 239 Query: 233 ------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-S 285 T+++P + + + + + A AGV + Sbjct: 240 KTKKSNRTIKMPHFLCEEMQEYLSMLYGLKKKDRIFTVTKSYLHHEMDRGAKAAGVKRIR 299 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345 H +R ++ D G +A + G ++++ Y + + + R+ + Sbjct: 300 IHDLRHSHISLLIDMGFSAVAIADRVGHESIEITYQYAHLFPSKQ--TEMAERLDDLGKG 357 Query: 346 DD 347 D Sbjct: 358 DF 359 >gi|149924447|ref|ZP_01912810.1| Phage integrase [Plesiocystis pacifica SIR-1] gi|149814686|gb|EDM74262.1| Phage integrase [Plesiocystis pacifica SIR-1] Length = 377 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 46/350 (13%), Positives = 101/350 (28%), Gaps = 35/350 (10%) Query: 12 TKERTRHGK--IIYYFR----KGHGRRIRLPYPH---ESTFIPAYMSALTGSTPKRE--Y 60 K R + G+ + GR+ + Y L E Sbjct: 6 RKWRDKQGRQHERWMVHIEHTWPDGRKQTIRKVSPVQTKRGAEQYERELRKQLVSGEILK 65 Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHI 119 + R+K TLK E+ + +S ++ G I + I Sbjct: 66 GGAKRRKVPTLKEFSEEFLAYQATMN-KPGVIDWKKSILRTHLLPALGRRRLDAIDERVI 124 Query: 120 RSG---VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + + P + L + + + A R + ++ P + + + + + + Sbjct: 125 DAFKVSQSQLELAPKTVNDHLKLLGRMLRVAKRWKLISEVPEIVLPKLAAPSFDFLDFKE 184 Query: 177 EDMQQFKSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHL-------------QNNI 221 + ++ E G + + +GLR + + ++ Sbjct: 185 AKLFLEGAWAYELYGGMWPIYMVVAMRTGLRLGEMKSLRWREDLDLDRGRVRVQRSHSDK 244 Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND---KQKMNATQFSIWFKAKAT 278 + K G V L ++ L + + + + Q + KA A Sbjct: 245 HGFASPKNGKSRDVPLTLDALEALRSWRGQARGELVFSQLSSGEPLRHRQPNNAVKAIAK 304 Query: 279 KAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 G+ + H +R A+ + G ++ G ++ Y AD Sbjct: 305 SVGLRQIHTHVLRHTFASHAVMRGIPMRQVQEWLGHSSIVVTMRYAHLAD 354 >gi|50121562|ref|YP_050729.1| phage integrase [Pectobacterium atrosepticum SCRI1043] gi|49612088|emb|CAG75538.1| phage integrase [Pectobacterium atrosepticum SCRI1043] Length = 328 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 51/322 (15%), Positives = 102/322 (31%), Gaps = 24/322 (7%) Query: 14 ERTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 ++ G+ R G+RIR + + + + ++++ P L Sbjct: 4 KKLDDGRYEVDVRPQGAEGKRIR-RKFNTKGEAQIFERHILVNYHNKDWVEKP-ADRRKL 61 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESR-- 126 L+S + + + + + + I + + G ++T K I +R Sbjct: 62 TELLSLWW---IYHGKSHDRGEIEKGRLNAIIVKLAEVGVIRADQLTKKAILDYRVNRLN 118 Query: 127 -KHTPSSAIQFLTSMRVLF-KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 PSS + + +F K EY + +P V++ K + + T +++ Sbjct: 119 EGLKPSSVNRHHAILSGMFTKLIEADEYHSQHPFKDVKQLKEQQAEMAFLTAGEIEDLLQ 178 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 R A L +G R + +H+ NN+ + K G T+ Sbjct: 179 L--LDGDNRKAVLVCLATGGRWGEVANLKCEHIINNMLTFMKTKNGKRRTIP-------- 228 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATA 304 ++ + + N +A ++ H R AT G Sbjct: 229 ISPALMTQIKHAKTGFVCHPNYDAVRNTLRAMKPDLPDGQALHVFRHTFATHFMMNGGNI 288 Query: 305 HELMATYGWKTVDQAETYTKGA 326 L G T+ Q Y A Sbjct: 289 ITLQRILGHSTIQQTMVYAHFA 310 >gi|237745687|ref|ZP_04576167.1| phage integrase [Oxalobacter formigenes HOxBLS] gi|229377038|gb|EEO27129.1| phage integrase [Oxalobacter formigenes HOxBLS] Length = 348 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 55/335 (16%), Positives = 111/335 (33%), Gaps = 18/335 (5%) Query: 16 TRHGKIIYYFRK--GHGRRIR-LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 R ++ + G+RI+ + Y + + E +N +K T + Sbjct: 5 KRKDSSYWWIKITSPGGKRIQQSTGTEDKMKAQEYHDKIKAALWDEEKLN--KKPQRTWQ 62 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTP 130 + +R + G+ +I+ I E ++ + Sbjct: 63 EATVRWLNETSDKR---TTREDITK-LRWLHPILGNLTLDQISLPVIDMIRERKLKEASK 118 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 ++ ++L +R + + E+ I+ ++ K R T E + + E Sbjct: 119 ATVNRYLNLVRAILN-RAKNEWEWIDGFPKIKMYKESNNRNRSLTPEQADKLLAELPE-- 175 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249 R F LY+GLR + +H+ + + + + Sbjct: 176 HQRDIVLFALYTGLRQRNVLDMEWEHVDLELRHAYVPRTKNGEALAVPLNDVAMSIITKQ 235 Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308 IGK F+ + + K ++ ++ +AG+ + H +R AT AG HEL Sbjct: 236 IGKHPQFVFSYRGKHIRYANTLAWRKALVRAGITDFRWHDLRHTWATWQRKAGTPTHELQ 295 Query: 309 ATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343 GWKT E Y A + R++ + Sbjct: 296 HLGGWKTRAMVERYAHIAPEA--LSNAASRLNKIK 328 >gi|218704094|ref|YP_002411613.1| Integrase from phage [Escherichia coli UMN026] gi|218431191|emb|CAR12067.1| Integrase from phage [Escherichia coli UMN026] gi|323976899|gb|EGB71987.1| bacteriophage lambda integrase domain-containing protein [Escherichia coli TW10509] Length = 356 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 59/345 (17%), Positives = 109/345 (31%), Gaps = 23/345 (6%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALT---GSTPKREY 60 LPP + R+ Y G+ L A + + G K Sbjct: 9 RRDLPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLT 65 Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 TL + Y K + + I++ S I R D ITTK I Sbjct: 66 ARINSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDVPLEDITTKEIA 125 Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + + +SA +++ F+ A+ + ++ NP + K + R E Sbjct: 126 AMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEY 185 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 ++ +++ S RLA E + +G R D C + + ++ KTG I + Sbjct: 186 LKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTA 245 Query: 239 DGFMKLLAMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKAGV-----NK 284 L + ++ +++ S +F +G+ Sbjct: 246 LHVDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPP 305 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + H +R SA + + G K+ A Y R Sbjct: 306 TFHELRSLSA-RLYEKQISDKFAQHLLGHKSDTMASQYRDDRGRE 349 >gi|319427383|gb|ADV55457.1| ISSod25 integrase [Shewanella putrefaciens 200] Length = 287 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 36/267 (13%), Positives = 79/267 (29%), Gaps = 21/267 (7%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRK 127 L+ ++ + +R ++ Q+ + + IT + + + R Sbjct: 2 SSLLQQFHDEIRLRGYSARTRSAYLRAITQL-QHYANQPLDSITDEQLTAYFRYLNLERH 60 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 H+ ++ L + L++ + +++ + + Sbjct: 61 HSRATLKLQLNGIHFLYEHVLGRDFTVQLSLPKR------PHKLPQLLSCQDIAALLYHC 114 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLL 245 + + R GLR S+ V + +K + V + + LL Sbjct: 115 QNLKQRAMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGKGAYDRLVIISPTLLTLL 174 Query: 246 AMTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297 ++ ++ + F A AG+ S H +R AT Sbjct: 175 RQYWRAYHPVEWLFASTYHDVVYPLHESTFRKALAKSARLAGITKPCSPHSLRHAYATHQ 234 Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324 AG H+L A G ++ E Y Sbjct: 235 LQAGMPLHQLQAQLGHHSIKSTERYLH 261 >gi|296104775|ref|YP_003614921.1| phage integrase family site-specific recombinase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059234|gb|ADF63972.1| phage integrase family site-specific recombinase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 361 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 50/326 (15%), Positives = 94/326 (28%), Gaps = 29/326 (8%) Query: 18 HGKIIYYF--RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75 +GK GRRIR AY + + + ++ + ++ L+ Sbjct: 8 NGKWQAQVFPNGRDGRRIR-RQFATKGEALAYERHIKEQSQDKPWLG-EKADKRRVRDLV 65 Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--------- 126 + + + LA + + GD + K + E R Sbjct: 66 TAWYNAHGVT-LADG--EKRKGAMEFACYAMGDPLATEFNAKIFSTYREQRLSGKITRSD 122 Query: 127 ---KHTPSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 TP + L R +F R ++ A NP +V K + T E+ + Sbjct: 123 RVKTVTPRTVNLELAYFRAMFNELKRLDDWTAPNPLENVREFKIAEVELAWLTVEEATRL 182 Query: 183 KSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 + L + L +G R ++ + + + K V + + Sbjct: 183 LEECEKSKADDLTAIVKICLATGARWGEAESLTGKQISPGKITFIKTKGKKNRAVPISEE 242 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADA 300 +LL + K F + F K + + +H +R A+ Sbjct: 243 LYELLPKSRTSKPLFTGC-------YSAFRSAIKRAGIELPDGQLSHVLRHTFASHFMMG 295 Query: 301 GATAHELMATYGWKTVDQAETYTKGA 326 G L G + Y A Sbjct: 296 GGNILVLQRILGHTDIKVTMRYAHFA 321 >gi|254773716|ref|ZP_05215232.1| prophage integrase [Mycobacterium avium subsp. avium ATCC 25291] Length = 384 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 43/347 (12%), Positives = 97/347 (27%), Gaps = 34/347 (9%) Query: 8 PPFVTKERTRHGKIIYYFRK-------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60 P + K G+ Y R G A+ S Sbjct: 6 PRGIRKRLNAAGEPRYQVRYLIRDPAAPSGWVETSATFPTLREAKAFKSERDNEAALGAR 65 Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHI 119 PR T L+ + ++ S ++ + + +++ +I + G +I+ + Sbjct: 66 RFDPRLGRTPLQRIWVQFSDSKKPA-VSPKTWSGYTQHWELRIKPRFGHVPVDEISRGDV 124 Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 ++ V+ P + + L +R + A + + NP L V + + Sbjct: 125 QAFVDDLTVGPWAKVSTLRLLRSILDVAHQDGRIHRNPALGVSAGRIPERERHRYLTAQE 184 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------------NNIFSIKTQ 227 Q + L Y+GLR S+ V+ + + Sbjct: 185 VQTLATACGDQGD--VVTILAYTGLRWSELVGLRVKDIDLVARRLYVRRAAPEVEGRIVI 242 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF---------SIWFKAKAT 278 +++ + + ++ + + Sbjct: 243 GPPKTRAGIRTVPLPQVVVDIFKTRISGRAPDEPAVTSPNGAMLRSNNWRRHTHWNKALK 302 Query: 279 KAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYT 323 K + + H +R A+++ +GA + T G T Y+ Sbjct: 303 KTNLAPLTIHDLRHTYASLARKSGADLRYVQKTMGHSTPTVTANIYS 349 >gi|312109706|ref|YP_003988022.1| integrase [Geobacillus sp. Y4.1MC1] gi|311214807|gb|ADP73411.1| integrase family protein [Geobacillus sp. Y4.1MC1] Length = 399 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 53/365 (14%), Positives = 112/365 (30%), Gaps = 52/365 (14%) Query: 26 RKGHGRRIRLPY----PHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS 81 R + IR+ L + E + L I E+ Sbjct: 26 RLRRTKTIRIEDEALLKTTKKLRDYLNEELLKFKMEVEAGEYIAPEKMKLADFIKEWETK 85 Query: 82 AHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHI--------RSGVESRKHTPSS 132 L+ + ++ S+ I+ G +I HI R+ + + + Sbjct: 86 YAVKELSETTLNNYLSHIKNHILPALGHMRIDQIKPVHIVNFLDQIKRADGKKKPLATRT 145 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ----FKSFWSE 188 ++R + + AV + + NP +V++PK K E ++ D ++ F++ +E Sbjct: 146 IENAYLTIRNILQRAVEWQIIKSNPASAVKKPKSKKEAVKEVQVYDEKEVEALFRAVQNE 205 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG------------------ 230 R+ + +GLR + ++ I+ K Sbjct: 206 PFHWRIFTTLAIAAGLRRGELLALEWSNIDLEKGVIRINKAIVKGRKRSVEKSPKTKKSN 265 Query: 231 -------------TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277 + ++ + KE F N D + T + W++ Sbjct: 266 RLVSLPKSVVAELKLYRRHWLKQKLQAGDLWKEEKEYLFCNIDGRHFYPTTPTTWWRRFT 325 Query: 278 TKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKN 335 +AG+ H +R SAT+ + G A + G + Y + + Sbjct: 326 KRAGIRYIRLHDLRHTSATLLINQGVHAKIIAERLGHSDIRVTMDIYGHALQ--KADHEA 383 Query: 336 SRRIS 340 + ++ Sbjct: 384 ANKLD 388 >gi|163856477|ref|YP_001630775.1| hypothetical protein Bpet2166 [Bordetella petrii DSM 12804] gi|163260205|emb|CAP42507.1| int2 [Bordetella petrii] Length = 402 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 59/365 (16%), Positives = 94/365 (25%), Gaps = 35/365 (9%) Query: 9 PFVTKERTRHGKI----IYYFRKGHGRRIRLPYPHESTFIPAY-----MSALTGSTPKRE 59 P + T G+ Y G R+ L E T A A Sbjct: 29 PGFLCKITPAGRRVFMLQYRTNAGERRKPALGLFGELTVEQARVMAQDWLAEVRRGGDPG 88 Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKH 118 + +K T+ L ++ + +++ ++ D+ II G + Sbjct: 89 GAKTEARKAPTIAELCKKFMEDYSKKRNKPSTQEGYQGVIDRCIIPLLGRKKVLDVKRPD 148 Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 I +E + P+ A + +R +F A Y P + Sbjct: 149 IAGLMEKLSYKPTEANKAFGVLRKMFNLAEVWGYRPDGTNPCRHVPMFPPGKETRLIVDG 208 Query: 179 MQQFKSFWS--------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230 E LA R S+ C L + + Sbjct: 209 ELALIYRHLDKLEAEGLENYVIPLAIRLQFEFAARRSEVCPLEWTWLDFENRRVVWPDSK 268 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW-----FKAKATKAGVNK- 284 T + L T +E + + AGV Sbjct: 269 TGGMSKPMSAEAYRLLSTAPRREGCPYVLPSPHNPDKHLTFGEHYGGWCRVLKAAGVPHV 328 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-----------IRLGI 333 HG+R S T A++G M G KTV Y D+ R I Sbjct: 329 GTHGIRHRSTTDIANSGVPTKVGMKLTGHKTVAMFMHYVHTEDKPVRDAAELVASRRQAI 388 Query: 334 KNSRR 338 +RR Sbjct: 389 TGARR 393 >gi|148379636|ref|YP_001254177.1| phage integrase [Clostridium botulinum A str. ATCC 3502] gi|237795099|ref|YP_002862651.1| site-specific recombinase, phage integrase family [Clostridium botulinum Ba4 str. 657] gi|148289120|emb|CAL83214.1| phage integrase [Clostridium botulinum A str. ATCC 3502] gi|229262802|gb|ACQ53835.1| site-specific recombinase, phage integrase family [Clostridium botulinum Ba4 str. 657] Length = 349 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 39/295 (13%), Positives = 82/295 (27%), Gaps = 23/295 (7%) Query: 52 TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFD 110 + K L Y + + + V + E +I+ D + Sbjct: 39 AADFEREFLNKQKNNCDMNFKELSDLYLEHSKTR-IRVTTFQVKEIIIKERILPYFKDMN 97 Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKRK 167 IT +IR + +F +A++ + NP L +K Sbjct: 98 VNNITPNNIRKWQNKLMSKDYKQTYLKAVNKQLNAIFNFAIKYYNLNSNPALKAGPMGKK 157 Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD----------------SCR 211 + + + + +LAFE L ++GLR + S Sbjct: 158 DSEGMQFWTLEEYKEFIKCVDNPMCKLAFEILFWTGLRKGELEALTFSDIDTKNKIISIT 217 Query: 212 AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271 + + + V + D + + F N + Sbjct: 218 KTYTRINKKDIINPPKTPKSKRKVSISDFLCEDIENYKKKLYNFDKNERIFPVGRHILKN 277 Query: 272 WFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 + K+ V H +R A++ + G + + G + + +TY+ Sbjct: 278 SMRDACEKSSVKEIRIHDLRHSHASLLIELGFSPLLIKERLGHENIQTTLDTYSH 332 >gi|110805962|ref|YP_689482.1| putative integrase for prophage CP-933U [Shigella flexneri 5 str. 8401] gi|110615510|gb|ABF04177.1| putative integrase for prophage [Shigella flexneri 5 str. 8401] Length = 345 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 56/335 (16%), Positives = 101/335 (30%), Gaps = 39/335 (11%) Query: 6 RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65 +LPP V + Y + R + + A K E + R Sbjct: 12 KLPPNVYPNK-------YSYVWKPTSRESVTLTAIKDGLAALWK-------KYEETVNNR 57 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 + T L ++ SA++ L+ ++ + + +++ G I +HIR ++ Sbjct: 58 DRAMTFGRLWEKFLASAYYSDLSPRTQKDYLQHQKKLLAVFGKVPADSIKPEHIRRYMDK 117 Query: 126 RK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 R + + A +SM ++ W + YV NPC V + K K KE Sbjct: 118 RGEQSKTQANHEKSSMSRVYSWGYERGYVKANPCAGVSKFKAKNRERYVTDKEYQAVLSV 177 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 +A E R SD + + N+ I+ KTG Sbjct: 178 AP---LPVFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAA 234 Query: 245 LAMTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAGV------NKSAHGVRKFSATI 296 + N + F+ + +AG + + H + Sbjct: 235 IEKAKQLPTSAYVISNQYGNRYMYKGFNEMWVEARNRAGKISGILTDFTFHDL------- 287 Query: 297 SADAGATA-----HELMATYGWKTVDQAETYTKGA 326 G + + G KT Q Y + Sbjct: 288 -KAKGISDYEGSSRDKQLFSGHKTEGQVLIYDRKV 321 >gi|326387918|ref|ZP_08209524.1| phage integrase [Novosphingobium nitrogenifigens DSM 19370] gi|326207964|gb|EGD58775.1| phage integrase [Novosphingobium nitrogenifigens DSM 19370] Length = 298 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 46/289 (15%), Positives = 85/289 (29%), Gaps = 28/289 (9%) Query: 69 TTLKWLISEYRKSAHW-GSLAVNSRISF----ESYFDQIIR--KSGDFDYRKITTKHIRS 121 TL ++S + + ++ ++ ++ + + +R Sbjct: 1 MTLPEILSAWHDHLAHGRRRSPHTVRAYVATARRLITRLEQDGALHWARLGALDATALRH 60 Query: 122 GVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + R+ SA + L++++ +A R + + P+ K RP T +D Sbjct: 61 YLADRREHGIGNVSAARELSALKAFIAFA-RTQADMPPGAPRLRGPRVKKGLPRPITPDD 119 Query: 179 MQQ-------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 + ++ L SGLR ++ L + T K G Sbjct: 120 AVNLAETVAEDATEPWIAARDTAVLLLLYGSGLRIGEALALPAGILPAGESMVITGKGGR 179 Query: 232 IITVELPDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKAGVN- 283 V L L F ++A G+ Sbjct: 180 QRLVALLPVVRAALERYAALVPWPLGKDDPLFRGAKGGPLSAGMIRRAMARARVALGLPP 239 Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 + H +R AT AGA L G ++ + YTK D RL Sbjct: 240 SATPHALRHSFATHLLGAGADLRSLQELLGHASLSSTQIYTK-VDAARL 287 >gi|52842271|ref|YP_096070.1| prophage dlp12 integrase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629382|gb|AAU28123.1| Prophage dlp12 integrase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 334 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 43/333 (12%), Positives = 99/333 (29%), Gaps = 19/333 (5%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 ++G G R R + ++ + + Sbjct: 4 TKKNGFWWIDVTFGDKRIRRSTRTKVKQQAQQFHD--NFLQDLWSNKHTKLPQQKSWVDA 61 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK---HIRSGVESRKHTPS 131 + + + + S ++ + + + G +I + I E TP+ Sbjct: 62 VVRWLEESAHK----RSLVTDKFHLAFLDPYLGQKTLDEINAELIEFIAQEKERTNVTPT 117 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 + + L +R + A ++ IN K + + IR ++ + + Sbjct: 118 TVNRMLEIIRAILNKAHKEWQ-WINTMPLFRMRKVENKRIRWLSRGQANKLIQELPNHLK 176 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----TIITVELPDGFMKLLAM 247 AF L +GLR S+ + + I V L + ++ Sbjct: 177 DMAAF--TLATGLRQSNVTQLQWSEVDLIRKHALIHPDQSKTKKAIPVPLNSQAIVIIEK 234 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHE 306 TF + + + ++ +AG+ + H +R A+ G + E Sbjct: 235 QVGLHPTFVFTYFGKPVTRCN-NHAWQKALIRAGIKDFRWHDLRHTWASWHVQNGTSLQE 293 Query: 307 LMATYGWKTVDQAETYTK-GADRIRLGIKNSRR 338 L GW + Y +D +++ + + Sbjct: 294 LQQLGGWSEYEMVLRYAHLSSDHLKVAAERITK 326 >gi|300856412|ref|YP_003781396.1| putative phage-like integrase [Clostridium ljungdahlii DSM 13528] gi|300436527|gb|ADK16294.1| predicted phage-related integrase [Clostridium ljungdahlii DSM 13528] Length = 372 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 48/375 (12%), Positives = 119/375 (31%), Gaps = 43/375 (11%) Query: 7 LPPFVTKERTRHGKIIYYFRKG--HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64 +P ++R + +I + G+R++ T A + + + Sbjct: 1 MPGGHIRKRGKRYNVIVEVERNPVTGKRLQKSIGGFKTKKEAEKALIEAVSNIN-KNEFI 59 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGV 123 + T +K ++ + + +L+ + ++ + +I G+ + +K+ HI+ Sbjct: 60 FPEKTLVKDFLTLWLDTYAI-NLSPTTYNGYKMIINNHLIPSIGNKELQKLQPLHIQRYY 118 Query: 124 ESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 ++ T + +Q +R +A + + ++ NP V+ PK + ++ Sbjct: 119 NEKQKTLKGKTLLQHHRVLRKALNYAWKMQLISRNPADMVDAPKVQKYRAVVLEPPQVKT 178 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI----------------- 224 S E ++ + L GLR + + I Sbjct: 179 LLSA-VENTRFEIPVNLALALGLRLGEVLGLRWSDIDFENGIINIEQTLVRAGTKLIFKE 237 Query: 225 -------KTQKTGTIITVELPDGFMKLLA-------MTPIGKETFFINNDKQKMNATQFS 270 ++ + L L ++ Q +N + FS Sbjct: 238 PKTEESARSISAPQELLKLLKQHKKNQLELKVRSYGEYENKHNLVCTRDNGQPLNTSSFS 297 Query: 271 IWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADR 328 F K + H +R +AT+ +G + G T+ Y+ Sbjct: 298 HAFGDFIKKVDIPHIRFHDLRHTNATLMLLSGTAPKVASSRLGHSTIGITMDLYSHVL-- 355 Query: 329 IRLGIKNSRRISSVV 343 + + + +++ V+ Sbjct: 356 KDMNKEAADKLNDVI 370 >gi|255026829|ref|ZP_05298815.1| hypothetical protein LmonocytFSL_11776 [Listeria monocytogenes FSL J2-003] Length = 259 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 30/231 (12%), Positives = 73/231 (31%), Gaps = 19/231 (8%) Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 + + + ++ + + ++ + ++S+R + + +R+ + NP V K + + Sbjct: 13 LDVRIYLTELKQKSFSRTTVARKISSLRSFYTFLLRENVINENPFTYVSHAKNQLRLPKF 72 Query: 174 WTKEDMQQFKSFWSEG-----SQPRLAFEFLLYSGLRCSDSCRAG-VQHLQNNIFSIKTQ 227 + E+M+ E + R+ E L +G+R S+ + + Sbjct: 73 FYSEEMEALFQVVYEDNETLTLRDRVLLEVLYGTGIRVSECAGILLPDLDTSYQAILIRG 132 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFF-----------INNDKQKMNATQFSIWFKAK 276 K V + + +N+ + Sbjct: 133 KGNKERYVPFGAYAEDAITDYLPERVNLMSRYKKSHDALLVNHYGDPLTTRGIRYCLTKI 192 Query: 277 ATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 +KA + H +R AT + GA + G ++ + YT Sbjct: 193 ISKASLTRKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHV 243 >gi|85373646|ref|YP_457708.1| site-specific recombinase, phage integrase family protein [Erythrobacter litoralis HTCC2594] gi|84786729|gb|ABC62911.1| site-specific recombinase, phage integrase family protein [Erythrobacter litoralis HTCC2594] Length = 398 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 41/349 (11%), Positives = 98/349 (28%), Gaps = 26/349 (7%) Query: 18 HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMS--------ALTGSTPKREYINSPRKKPT 69 G+ +Y + R+R ++ + Y + A + Sbjct: 50 SGRNVYIVQTRMAGRMRTVTIGPTSVLTRYQAQMVARRVIAYAQVGRDPATERQRIRSAP 109 Query: 70 TLKWLISEYRKSAHWGSLAVN--SRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127 + ++EY A + + + ++ H+ S Sbjct: 110 SFADFVTEYWDRWAPRWKASTLETHTGYRR--RYLDDAFVGVYIDELNEGHVTSWFADLN 167 Query: 128 H--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + P ++ + ++ + A Y N + + D Sbjct: 168 NLTGPGASNRTFEILKHMLNKAEDWGYRLENTNPCRSVRPNRKRQCERFLTNDELARLGA 227 Query: 186 WSEGSQPR---------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 + A LL +G R S+ ++ N ++ KTG Sbjct: 228 ELTNLRASEDRTKQCSGAAITLLLLTGCRKSEILTLEWTDIKGNRLHLRDSKTGPRTVWL 287 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSAT 295 + A+ + + N + + + +++ +AG+ H +R A+ Sbjct: 288 GSAAREVIAALPRFERIPYPFWNYRYRKPLRCVNGFWRRLRDEAGLPDVRIHDLRHTFAS 347 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 +A T + G V Y D L + +++I +++ Sbjct: 348 HAAMNKETLPMIGRLLGHANVQTTARYAHFDDGHLL--EAAQQIGDLLE 394 >gi|288869960|ref|ZP_06112412.2| putative integrase - phage associated [Clostridium hathewayi DSM 13479] gi|288868962|gb|EFD01261.1| putative integrase - phage associated [Clostridium hathewayi DSM 13479] Length = 424 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 51/346 (14%), Positives = 109/346 (31%), Gaps = 37/346 (10%) Query: 11 VTKERTRHGKIIYYFRKG--HGR--RIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 + ++ + G+ G G+ R + Y ++ ++ Sbjct: 52 IMPKKRKDGRYSKQVTIGIKDGKPVRKTIYGSTIKELDKNYRDFMSLMD----KGIILQE 107 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 + TT K L + + GS+ + + + + GD + + HI S Sbjct: 108 QNTTFKELSELWLTNEKLGSVRDQTISTIKGQLSTVNSYIGDIRIKDLRMSHIESFRSYM 167 Query: 127 KHTPSSA--IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + A L+ ++ + ++AV+++ +A + ++R K + R T E+ F+ Sbjct: 168 IKSKKLAQYNLCLSRIKAIVRYAVQKDIMAKDITAGMKRVKIDKKPKRALTSEERLLFEI 227 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-----------------NNIFSIKTQ 227 S R LLY+GLR ++ V+ + N + Sbjct: 228 TD-LDSFERCFINLLLYTGLRKCEALALDVKDIDLKKNQIYVSKTLVASKKINTCLQEYT 286 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK-------- 279 KT + + + I + + K + ++ K Sbjct: 287 KTAAGLRQIPIPAPLAKILFEFIKGRSGILFPSKSGRYISTLDYKWEKILKKVQAVSSTP 346 Query: 280 AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 + + H R A+ AG + G + +TYT Sbjct: 347 LSDDITPHIFRHTYASDLYKAGVDIKQAQYLLGHDDIKTTLDTYTH 392 >gi|270293803|ref|ZP_06200005.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270275270|gb|EFA21130.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 386 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 55/375 (14%), Positives = 111/375 (29%), Gaps = 45/375 (12%) Query: 1 MTPSL---RLPPFVTKERTRHGKIIYY---FRKGHGRRIRLPY-----PHESTFIPAYMS 49 M + P + +++ +G Y +R G + L + Sbjct: 1 MAKKTTVQKEPVKLREKKLSNGNSSLYLDIYRNGKRHKEYLKLYLIDATTPMEREQNRQT 60 Query: 50 ALTGSTPKREYINSPRKKPTTLKW-------LISEYRKSAHWGSLAVNSRISF---ESYF 99 T K + + + + + YRK S+ ++ S Sbjct: 61 LATAQAIKSKRLIEMQNGEYSFTRQFKEDTPFLEYYRKMVEDRHKNPESKGNWGNWRSCL 120 Query: 100 DQIIRKSGDFD-YRKITTKHIRSGVE---------SRKHTPS---------SAIQFLTS- 139 + + ++ IT + I + ++ P S ++ Sbjct: 121 RYLEIYCDEKTTFKDITPEFIAGFKDFLDNVEKDTHKRTGPRRERDVFQGLSQNSKVSYF 180 Query: 140 --MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197 +R A + +++NP +E K T E+++Q + + AF Sbjct: 181 NKLRACINQAYDERIISVNPLRGIEGFKAAEVKRDYLTLEEVKQLAATPCRYPILKRAFL 240 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI 257 F +GLR SD + +Q + + + Sbjct: 241 FSCLTGLRKSDIQKLTWSEVQKFGDYTRIIFKQKKTGGQEYLDISPQAEKYLGERGNPED 300 Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKT 315 + S+ + + KAGVNK + H R A + D GA + + G K Sbjct: 301 PVFTGFTYGSWTSVELQRWSMKAGVNKNLTFHCGRHTFAVLMLDLGADIYTVSKLLGHKE 360 Query: 316 VDQAETYTKGADRIR 330 + + Y K D+ + Sbjct: 361 LATTQIYAKVLDKNK 375 >gi|85708628|ref|ZP_01039694.1| tyrosine recombinase [Erythrobacter sp. NAP1] gi|85690162|gb|EAQ30165.1| tyrosine recombinase [Erythrobacter sp. NAP1] Length = 265 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 41/236 (17%), Positives = 76/236 (32%), Gaps = 19/236 (8%) Query: 109 FDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165 D + +RS + SR+ SSA + L++++ L +A + + P+ Sbjct: 11 HDVAAVEAHDLRSHLASRRAQGLSNSSAARELSALKALIAYARSEAGDPDPSAPRLCGPR 70 Query: 166 RKTEGIRPWTKEDMQQFKS-------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218 K RP T ++ G++ R + SGLR +++ + Sbjct: 71 LKKGLPRPVTPDEAVNIADLIDGTASEDWIGARDRAVLLLMYGSGLRIAEALSLEGRDAV 130 Query: 219 NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK-------QKMNATQFSI 271 T K G V + + +A ++ ++A Sbjct: 131 LGETLQVTGKGGKQRLVPILPITREAVAEYANACPWPLPTHEPLFRGAKGGPLSAGMVQK 190 Query: 272 WFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 G+ + H +R AT AGA L G ++ + YTK Sbjct: 191 AMARARRALGLPDTATPHALRHSFATHLLGAGADLRSLQELLGHASLGSTQIYTKV 246 >gi|160942095|ref|ZP_02089410.1| hypothetical protein CLOBOL_06983 [Clostridium bolteae ATCC BAA-613] gi|158434986|gb|EDP12753.1| hypothetical protein CLOBOL_06983 [Clostridium bolteae ATCC BAA-613] Length = 218 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 64/200 (32%), Gaps = 16/200 (8%) Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLA 195 M+ F + ++ + +P ++ PK + + + ++ + + + Sbjct: 1 MKAFFNFMFKEGRIRKDPAELLKAPKIEKKAPVILSVNEVNALLDQPGMTTSKEIRDKAM 60 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT------- 248 E L +G+R S+ + L + I + V + L++ Sbjct: 61 LELLYATGIRVSELIGLELSDLNMQVGYITCRDGQKERMVPFGKPAKQALSVYLEKGRSQ 120 Query: 249 ---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303 + F N + M+ F K KAG+ + + H +R A GA Sbjct: 121 LLKGKESQWLFTNCSGKAMSRQGFWKIIKYYGEKAGIQADITPHTLRHSFAAHLIRGGAD 180 Query: 304 AHELMATYGWKTVDQAETYT 323 H + A G Y Sbjct: 181 IHAVQAMLGHSDSTTTHMYA 200 >gi|283469696|emb|CAQ48907.1| integrase [Staphylococcus aureus subsp. aureus ST398] Length = 378 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 46/385 (11%), Positives = 111/385 (28%), Gaps = 60/385 (15%) Query: 11 VTKERTRHGKIIYYF--------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62 + K + + G Y F G +R + L + ++N Sbjct: 2 IKKYKKKDGSTAYMFVAYLGTDPITGKQKRTTRRGFKTEREAKIAEAKLQTEVSQNGFLN 61 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKH 118 + TT K + + + ++ ++ ++ + D +KIT + Sbjct: 62 NDI---TTFKEVYELWLEQYQ-NTVREST---YQRVLTLFDTAILEHFQDVPIKKITVPY 114 Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG----IRPW 174 + + S +FK+AV + + NP + P++K + + Sbjct: 115 CQKVINKWNKKYSDIKAIRIYTSNVFKYAVSLKIIVDNPFAHTKAPRKKEAQQDASTKYY 174 Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-- 232 + ++++QF +F + F L ++G R + + + +I KT Sbjct: 175 SSDELKQFLTFVEDDPLYYAIFRTLAFTGFRRGELMALTWKDIDFTKQTISINKTCARGA 234 Query: 233 ---------------------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMN 265 + ++ L + + N Sbjct: 235 NYKLIIQEPKTKSSHRTISIDDKTASVLKSWRTHQRVESLKYGHNTSDKHQHVFTTVRDN 294 Query: 266 ATQFSIWFKAKATKAGVNKSA-----HGVRKFSATISADAGATAHELMATYGWKTVDQAE 320 + S HG R ++ +AG + E+ G + Sbjct: 295 KPLYPEHCNKALDLICEKNSFKRIKVHGFRHTHCSLLFEAGLSIQEVQDRLGHGDIKTTM 354 Query: 321 -TYTKGADRIRLGIKNSRRISSVVD 344 Y ++ R + + + + ++ Sbjct: 355 DIYAHVTEKQR--DQVADKFAKYIN 377 >gi|227431405|ref|ZP_03913455.1| bacteriophage integrase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352833|gb|EEJ43009.1| bacteriophage integrase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 375 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 50/361 (13%), Positives = 116/361 (32%), Gaps = 43/361 (11%) Query: 11 VTKERTRHGKII----Y--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64 + + ++HGK+ Y + G R + + + + + Sbjct: 3 IKQVDSKHGKVYEVVGYIGRHQDGTQARAKKRGFDSKRSAQQWFNNEVALFSNGQSKYNK 62 Query: 65 RKKP--TTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRS 121 + P T+K L + ++ ++ ++ + F+ II GD I ++ Sbjct: 63 KTTPNVMTVKELYDMWLETYQ-HTVEESTLNKTMNVFNVHIIPAWGDTHVTDIKPLDLQR 121 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + + + + +R L AVR + + ++P +E PK + + + D+ + Sbjct: 122 YINTMQGKILHYRKITGYLRRLLNIAVRMDMIPVDPFTKIEMPKERRQVNKRKQFMDVDE 181 Query: 182 FK--------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN------------- 220 FK + Q +G+R + + + N Sbjct: 182 FKAFLEVLDSQYKYINQQAYTLLRLGALTGMRTEELLALQWEQVDFNGGYISIVQALGRG 241 Query: 221 ----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS-----I 271 + + + T+++ + + +L+ ++ Sbjct: 242 FNGGTYIKAPKSQTSKRTLKIDNKMLAVLSDWYEVSHYNSNDDFVFNNQGKTLQVMRPNK 301 Query: 272 WFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADR 328 W + K GV S H +R AT++ D GA+ ++ G V + Y+ R Sbjct: 302 WLHDVSDKYGVAVGLSMHKLRHTWATLALDQGASVKQVQTYLGHADVSMTLDVYSDITKR 361 Query: 329 I 329 Sbjct: 362 A 362 >gi|218290710|ref|ZP_03494792.1| integrase family protein [Alicyclobacillus acidocaldarius LAA1] gi|218239248|gb|EED06447.1| integrase family protein [Alicyclobacillus acidocaldarius LAA1] Length = 392 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 49/355 (13%), Positives = 101/355 (28%), Gaps = 48/355 (13%) Query: 15 RTRHGKIIYYFRKG-----HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 R R G R +++ L Y+ +K Sbjct: 16 RKRGNSWSVVVYLGYDEQGKKRYKWHGGFKTKRDAERFLATLVEQVHDGTYVEPSKK--- 72 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR-- 126 T+ + E+ + + S+ + II + G + K+ HI+ Sbjct: 73 TVGAYLREWLDDKR-TKVRPGTLRSYVWLVEHHIIPRIGQLELAKLRPSHIQKLYTDLQT 131 Query: 127 ---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + S + + AV+ + N +VE P+ + +R WT E + F Sbjct: 132 GDEHISKRSVLHAHRILHQALDRAVKWGLITRNVTDAVEPPRPARQEMRVWTDEQLDAFL 191 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------------ 231 + S+ +AF L +G+R + + + ++ ++ + Sbjct: 192 QAARK-SRYYVAFVLLSSTGMRVGEVLALRWEDVDLQAGLVRVVRSYSYTGKGYRIEEPK 250 Query: 232 ----IITVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWF 273 ++ LP + LL + + + F Sbjct: 251 TESGRRSIALPPAVVDLLRKHKTEQAARRLMVGSAWEDNDLVICTAFGKPILQHNLRTSF 310 Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA 326 + G+ + H +R ATI G + G + TY+ Sbjct: 311 HRIIERTGLPRIRLHDLRHTHATILLQRGVHPKVVQERLGHSDITLTLNTYSHVV 365 >gi|148359487|ref|YP_001250694.1| phage related integrase [Legionella pneumophila str. Corby] gi|148281260|gb|ABQ55348.1| phage related integrase [Legionella pneumophila str. Corby] Length = 413 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 53/332 (15%), Positives = 96/332 (28%), Gaps = 34/332 (10%) Query: 31 RRIRLPYPHESTFIPAYMSA------LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHW 84 +RI L + T A A + + K TLK +Y K+ Sbjct: 59 KRITLGKYGQITAEEARKQAKHLLGQIAKGDNPIAEKKINKIKSITLKEAFHDYLKAR-- 116 Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS--AIQFLTSMRV 142 L + + ++S Q+I D IT + I T S A + +R Sbjct: 117 KDLKILTIKDYQSILKQVISDWFDKPLMNITREMIAKRHAQYGQTNSKARANYAMRVLRA 176 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPW------TKEDMQQFKSFWSEGS------ 190 +F +A + + + P R W + W EG Sbjct: 177 VFNFAAHEYQLEDGQPIIAINPVEYLSHTRSWYRVDRKNTMIKSHQLAAWHEGLTRLGEQ 236 Query: 191 -------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFM 242 + F +L++GLR +++ + + + F+ Sbjct: 237 EDYSQAMMWKDYFLLVLFTGLRRTEAASLCWKDVDFKDKTFTVQDTKNREVHTLPMSDFL 296 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQF--SIWFKAKATKAGVNKSAHGVRKFSATISADA 300 L + + A +GV+ + H +R+ AT + Sbjct: 297 YELFLRRKQFKMNEFVFPSPSKTGHVIDPRKAMLKVAELSGVSFTVHDLRRTFATTAESL 356 Query: 301 GATAHELMATYGWK-TVDQAETYT-KGADRIR 330 A+ L K D Y + +R+R Sbjct: 357 DLPAYALKRLLNHKMNNDVTAGYIMRDVERLR 388 >gi|62185317|ref|YP_220102.1| site-specific tyrosine recombinase XerD [Chlamydophila abortus S26/3] gi|62148384|emb|CAH64151.1| putative site-specific recombinase [Chlamydophila abortus S26/3] Length = 299 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 37/263 (14%), Positives = 86/263 (32%), Gaps = 23/263 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLTSMR 141 L+ NS ++ ++ + +I+ + + RK ++ + L +++ Sbjct: 22 RGLSSNSISAYCQDITLFLKINTITSIAEISQDSVHLFVRQLHKRKEAEATLARRLIALK 81 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-------EGSQPRL 194 V F++ + + P + E PK T +++ + ++ Sbjct: 82 VFFRFLKEAKLLEHPPLI--EHPKIWKRLPTVLTPQEVDALLAIPKKTPTSSLISTRDTA 139 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII----------TVELPDGFMKL 244 L +G+R S+ C + + ++ + + + T + F + Sbjct: 140 ILHTLYSTGIRVSELCGLHIGDVSDDFLRVTGKGSKTRLVPLGKLASAAIDAYLCPFREN 199 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGAT 303 L + F++ K+ + A + + S H +R AT D A Sbjct: 200 LQKKQSEEHHLFLSIRGHKLERSCVWKRIHYYAKQVTHKRVSPHSLRHAFATHLLDNKAD 259 Query: 304 AHELMATYGWKTVDQAETYTKGA 326 + G + E YT A Sbjct: 260 LRVIQEMLGHARIASTEVYTHVA 282 >gi|301311823|ref|ZP_07217745.1| site-specific recombinase, phage integrase family [Bacteroides sp. 20_3] gi|300829925|gb|EFK60573.1| site-specific recombinase, phage integrase family [Bacteroides sp. 20_3] Length = 380 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 56/324 (17%), Positives = 111/324 (34%), Gaps = 29/324 (8%) Query: 26 RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85 R+ + + +R + A ++A G+ P+ + L ++ RK+ Sbjct: 56 RRQNAQTLRKAEDIQRERTEALLNAKVGTVPE------SKSSDMLLSDWMTIVRKNHEHR 109 Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK----------HTPSSAIQ 135 ++ +++ D + + ++ + TP +A Sbjct: 110 E--ARDLNGIDNARKNLLKFRADVRLCDVDRQFYIDYIDWLRSSCKTAWGKQITPKTAHS 167 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVER---PKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 + T++R AVR+ + NP +E K T E++++ + Q Sbjct: 168 YYTTLRTALNEAVRERLIESNPWYKLEMTEKIKVPESKRDFLTIEEIKKMIATPFFNEQV 227 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI----KTQKTGTIITVELPDGFMKLLAMT 248 R A+ F + GLR SD + + + + KT + + L +K L Sbjct: 228 RQAYLFSCFCGLRISDIRKLRWRDISISGGQWLVSVVMTKTTNPVYIPLSSQAVKWLPER 287 Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHE 306 + + S K A KAGV K + H R A + GA + Sbjct: 288 NGCTPDGLVFGGLPNTSNLCVS--LKNWADKAGVKKNVTFHTARHSCAVLLLTLGADIYT 345 Query: 307 LMATYGWKTVDQAETYTKGADRIR 330 + G ++V + Y K D+ + Sbjct: 346 VSKILGHRSVRATQVYAKIVDKKK 369 >gi|163798313|ref|ZP_02192240.1| putative integrase [alpha proteobacterium BAL199] gi|159176400|gb|EDP60988.1| putative integrase [alpha proteobacterium BAL199] Length = 285 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 49/283 (17%), Positives = 90/283 (31%), Gaps = 18/283 (6%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSS 132 + YR+S+ + LA ++ + D + + G D I+T + + ++ Sbjct: 2 VDAYRRSSAFTKLAPRTKRDYHQVLDYLRKPLGAADVDGISTPELATLIDRIAEKRNWRF 61 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQFKSFWSEGSQ 191 A L + +F + + +NP V + R E D + + + Sbjct: 62 ANYCLAVISRVFSIGILRGKAKVNPATGVPKLTRPREAPAANRPWTDHEIEVVLAAAPAG 121 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQH---------LQNNIFSIKTQKTGTIITVELPDGFM 242 LA Y+GLR D+ + + ++ P Sbjct: 122 VALAVGLGAYAGLREGDAIALPMSAYSKVGRRAAITFRPGKTHRADEDPLVLPVHPRLVQ 181 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKA------KATKAGVNKSAHGVRKFSATI 296 + + + + F A K G + HG+R AT Sbjct: 182 LIDNRKAGDSTVMVLGMRGRPYTSDGFRTMLFRVIAQLEAAGKVGEGLTFHGLRHTVATK 241 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 +D GA + GW + A+ YTK DR + R+I Sbjct: 242 LSDLGADNETIADVLGWSSTAMAKRYTKTRDRTKRAAAGLRQI 284 >gi|121611464|ref|YP_999271.1| phage integrase family protein [Verminephrobacter eiseniae EF01-2] gi|121556104|gb|ABM60253.1| phage integrase family protein [Verminephrobacter eiseniae EF01-2] Length = 378 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 81/302 (26%), Gaps = 45/302 (14%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTPS 131 + Y + LA S + +++ R + ++T HIR V Sbjct: 23 VQRYLEHLRVEKRLAARSLTLYRLDLEKLARFAAGLSLPLLQLTDAHIRRFVAQMHSAGR 82 Query: 132 S---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ------- 181 S L+ R F WA RQ + NP L + PK + + + Sbjct: 83 SGRGIALILSGWRGFFIWAGRQGLIGRNPVLGIRAPKSPKPLPKALGVDQAMRLADFDGA 142 Query: 182 ----FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-------- 229 ++ + E L SGLR + + + Sbjct: 143 AGAATEADIWLQIRDAAMAELLYGSGLRAGELAGLDAVPNADTERQGRGWVDLQAGEVHV 202 Query: 230 ----GTIITVELPDGFMKLLAMT-------------PIGKETFFINNDKQKMNATQFSIW 272 +V + L F+ ++ Sbjct: 203 LGKGSKRRSVPMGRAASAALRAWLALRAKPFGAAGAARLDAALFVGRRGARLTTLSIWRR 262 Query: 273 FKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 + ++ +AG+ H +R A+ + + G ++ + YT+ D Sbjct: 263 LRQRSQRAGLPSPVHPHMLRHSFASHLLQSSGDLRAVQELLGHASITSTQVYTR-LDFQH 321 Query: 331 LG 332 L Sbjct: 322 LA 323 >gi|91788824|ref|YP_549776.1| phage integrase [Polaromonas sp. JS666] gi|91698049|gb|ABE44878.1| phage integrase [Polaromonas sp. JS666] Length = 387 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 47/339 (13%), Positives = 108/339 (31%), Gaps = 23/339 (6%) Query: 9 PFVTKERTRHGKIIYYF--RKGHG--RRIRLPYPHESTFIPAYMSALTGSTPKR-----E 59 P + + G Y RK G R+ + + T A A Sbjct: 32 PGLWLRVSSAGVKTYAVLARKKGGALERVTIGTADKLTPENARDKAKKIIADLATGVSHA 91 Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKH 118 ++ TT L+++Y + ++ S +++ + + G ++ + Sbjct: 92 ASARAKRGETTFAELLTDYLSN---TTMKPRSLEAYQWLYKKHVEADLGKRKLSDVSVER 148 Query: 119 IRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 IR+ + K TP++A + ++ ++ F WA+++ + +T R Sbjct: 149 IRALHKKISKDTPTTANRCVSMVKAAFNWALKEGTYTGANPAGHVKKNTETSRTRYLQPA 208 Query: 178 DMQQFKSFWSEGS-QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 ++ F E + F L +G R ++ + + E Sbjct: 209 ELAIFFQALEESEEPAKSFFMLCLLTGARRANVLAMRWADISLEDGIWRIPAGDAKAGEE 268 Query: 237 LPDGFMKL-------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHG 288 + + L + + D + + + + ++G+ + H Sbjct: 269 MNIPLVPEAVTLLTRLKIEVADTSPWVFPADSKTGHYQEPKRAWATLRRRSGLADLRIHD 328 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 +R+ + GA G K++ A Y + AD Sbjct: 329 LRRTMGSWLVRTGANTAINAKALGHKSMQAAAVYQRIAD 367 >gi|27497173|gb|AAN64203.1| Int [Photorhabdus luminescens] Length = 465 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 52/389 (13%), Positives = 125/389 (32%), Gaps = 52/389 (13%) Query: 10 FVTKERTRHGKII--------------YYFRKGHGRRIRLPYPHESTFIPAYMSALTGST 55 ++ + R +G+ ++ ++ +P +T T Sbjct: 71 YLARYRKANGQPYTPDSQRRRLRSLRLWFDWL--QQQHAIPASPATTLASPDRKKRPSVT 128 Query: 56 PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYR 112 ++ + TL+ ++ + ++ L+ ++ S+E G Sbjct: 129 ETHGQPDAIPARFATLRQHLAAWLEAVQGQGLSERTQESYEERLLPFVTWCEARGVMTAP 188 Query: 113 KITTKHIRSGVESRK---------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163 +++ + S + ++P S L+ +R F+W +++ ++ NP S+ Sbjct: 189 QVSLPLLESYQRWLRSYRKTNGQPYSPGSQRDRLSVLRQWFRWLLQRHHILYNPVDSLVL 248 Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSE-----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218 PK + ED + G + R+ E L +G+R + + + Sbjct: 249 PKEEKRLPAQVMNEDETHTVLAAANIDTLTGLRNRVILEVLWSTGIRRMEVANLLLSEVD 308 Query: 219 NNIFSI--KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA- 275 + + K V + + + L+ + D + T+ Sbjct: 309 FGRGVVLVRQGKGNKDRVVPIGEQALHWLSRWLSVRPQLTRRGDSGHLFITRKGRGLARG 368 Query: 276 ---------KATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +A + + H R AT + GA + A G + ++ + YT+ Sbjct: 369 TLTQIAADSIRKQAQLAKPGACHLFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTR 428 Query: 325 GA--DRIRLGIK---NSRRISSVVDSDDP 348 A ++ + R+ SD+P Sbjct: 429 VAIGHLKKVHEQTHPAERKPEQKTPSDNP 457 >gi|254508879|ref|ZP_05120988.1| super-integron integrase IntIA [Vibrio parahaemolyticus 16] gi|219548193|gb|EED25209.1| super-integron integrase IntIA [Vibrio parahaemolyticus 16] Length = 320 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 38/301 (12%), Positives = 85/301 (28%), Gaps = 53/301 (17%) Query: 79 RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138 ++ A + ++ + + I + K+ H+ + + A + Sbjct: 10 KEHMIARHYAPKTIQAYLLWITKFILFNDKAHPSKLNESHVEAFLTHLAVDCKVAAKTQA 69 Query: 139 -SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197 ++ + ++ + ++ + + TK++M++F + +L Sbjct: 70 LALNSISFLYREYFRTPLSVEMKFQKSQLDRKLPVVLTKDEMRRFLMH--IDPRYKLHIM 127 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--------------------------- 230 L SGLR + R VQ + + +++ + Sbjct: 128 LLYGSGLRVMECVRLRVQDIDYDYKALRVWQGKGGKNRVVTLASEAISLLKEQQGIALRY 187 Query: 231 -------------TIITVELPDGFMKLLAMTPIGKETFFI--------NNDKQKMNATQF 269 I L + +N T Sbjct: 188 YKKDINSPGYAGVHIRPSLQRKYPEAELDFNWHFLFPSHQLSVDPNTGELKRHHINETSL 247 Query: 270 SIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 K A +AG+ K + H +R AT ++GA + G V + YT + Sbjct: 248 QRAVKRSAKEAGITKAVTCHTLRHSFATHLLESGADIRTVQEQLGHSDVKTTQIYTHVIE 307 Query: 328 R 328 R Sbjct: 308 R 308 >gi|103485754|ref|YP_615315.1| phage integrase [Sphingopyxis alaskensis RB2256] gi|98975831|gb|ABF51982.1| phage integrase [Sphingopyxis alaskensis RB2256] Length = 297 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 37/284 (13%), Positives = 85/284 (29%), Gaps = 25/284 (8%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-----GDFD---YRKITTKHIRSG 122 LI ++ + ++R ++ + ++ G D +T +R+ Sbjct: 3 SDLIRDWDAHLAHEKRRSEHTRRAYIATAERFCAFLSLHRGGAVDAAMLTALTPNDLRAY 62 Query: 123 VESRKHTP---SSAIQFLTSMRVLFKWA---VRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + R+ +SA + L+++R ++ P + P+ + Sbjct: 63 LADRRAEGLGNASAARELSALRAFLRFVGGSNASVPQMRGPRVKKGLPRPVSPAEAMQLA 122 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 ++++ G++ L +GLR ++ + T K V Sbjct: 123 QNVEDNAREGWVGARDFALLLLLYGAGLRIGEALALTGAAMPLGDTLRVTGKRNKTRIVP 182 Query: 237 LPDGFMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAH 287 + K +A ++ + ++ G+ + H Sbjct: 183 ILPAVAKAVARYVAACPWPIARETPLFLGVRGGPLHPGVVRVSVRSARRALGLSDRTTPH 242 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +R AT GA L G ++ + YT D L Sbjct: 243 ALRHSFATHLLAGGADLRSLQELLGHASLASTQIYT-AVDAAHL 285 >gi|34762210|ref|ZP_00143217.1| DNA integration/recombination/invertion protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27888171|gb|EAA25230.1| DNA integration/recombination/invertion protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 348 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 43/277 (15%), Positives = 96/277 (34%), Gaps = 24/277 (8%) Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----V 123 T L ++ + +L+ S + +++ + + K+TT IR Sbjct: 56 DRTNAELWKKFFLTKKAENLSDKSLLYYKNSLELF-SLFVKKSFLKVTTDDIRLYLAVER 114 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 E + S + F + +EY++ NP +++ K + +T+ ++++ + Sbjct: 115 EKNQQKAVSIDNIRRILNSFFSFLNEEEYISNNPVKRIKKVKGQKTEKTAFTQLELEKLR 174 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--------------- 228 E S + E L+ S +R ++ ++ + IK + Sbjct: 175 MAC-ENSLEKAIMEVLISSAIRATELANIKIRDIDFEKNEIKIVRKGNKEGIAFMSTIAA 233 Query: 229 --TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KS 285 I+ L + + + + K+ F K+ AT+A V Sbjct: 234 LAIKKYISERGNYNTPYLWVVDGLMYKCYKNQILGSKIETEGFRRVLKSIATRAKVENVH 293 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 H R+ AT++ G E+ G + ++ Y Sbjct: 294 PHRFRRTFATMALKKGMDVEEIQQVLGHQNINTTMIY 330 >gi|257093399|ref|YP_003167040.1| integrase family protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045923|gb|ACV35111.1| integrase family protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 305 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 43/285 (15%), Positives = 88/285 (30%), Gaps = 22/285 (7%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSSA 133 + K L + ++ ++ D ++ + + H+ SS Sbjct: 17 ELHLKHLKLKGLQPKTIEAYSRAIRRVGDYF-DHQIGDLSEADLVDYFTDLRETHSWSSV 75 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193 L ++ ++ +++ +VA + ++ P+ + +E + F + + Sbjct: 76 KLDLYGLKFHYEHVLKKPWVAPS---LIKPPRSQRLPDIVTVEETERIFLATQVLSYRVF 132 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253 + L L G I+ K V LP +LL Sbjct: 133 FFTLYSLGLRLGEGLRLTVGDIDGACERVHIRDAKGNKDRLVPLPTATHQLLRRFWQRHR 192 Query: 254 TFFINNDKQ------------KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 + + ++ +A GV K S H +R AT + Sbjct: 193 NPVLLFPNRHGGLAGARAARTPLDRGGVQKALRAVVESCGVKKHISPHSLRHAYATHLVE 252 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 AG E+ G ++ YT DR R RI++++D Sbjct: 253 AGVELTEVQDILGHHSILTTVRYTHLTDRSR--HHAIDRINALMD 295 >gi|124268427|ref|YP_001022431.1| tyrosine recombinase XerC subunit [Methylibium petroleiphilum PM1] gi|124261202|gb|ABM96196.1| tyrosine recombinase XerC subunit [Methylibium petroleiphilum PM1] Length = 335 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 43/277 (15%), Positives = 91/277 (32%), Gaps = 30/277 (10%) Query: 85 GSLAVNSRISFESYFDQI--IRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTS 139 L+ + +++E F ++ + R + H+R + P S L++ Sbjct: 46 RRLSAKTLLNYEEAFRRLGEAAQRDGVALRAVQPHHVRHWMARLHAGGLAPRSIAIALSA 105 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS------QPR 193 R L++W + VA+NP + P+ + + + + R Sbjct: 106 WRGLYRWLGHEGRVALNPVEGLRAPRAAKPLPKALSVDHAVALADHRQVDGDARLEARDR 165 Query: 194 LAFEFLLYSGLRCSDSC--------RAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 E L GLR ++ A + + + K +V + + L Sbjct: 166 CLVELLYGCGLRVAELVDLDVTPGGGALGWIDRADAEAHVLGKGSKRRSVPVGRAALAAL 225 Query: 246 AMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSAT 295 + + F++ +++ A+Q K +A +AG+ H +R A+ Sbjct: 226 DDWLAQRGSVAQVDEPALFVSRHGRRLTASQVRTRLKERAIQAGLPTHVHPHMLRHSYAS 285 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 + + G + + YTK D L Sbjct: 286 HLLQSSGDLRAVQELLGHANITTTQVYTK-LDFQHLA 321 >gi|227818829|ref|YP_002822800.1| transposase number 1 for insertion sequence NGRIS-16a [Sinorhizobium fredii NGR234] gi|227819104|ref|YP_002823075.1| transposase number 1 for insertion sequence NGRIS-16b [Sinorhizobium fredii NGR234] gi|227819152|ref|YP_002823123.1| transposase number 1 for insertion sequence NGRIS-16c [Sinorhizobium fredii NGR234] gi|227819580|ref|YP_002823551.1| transposase number 1 for insertion sequence NGRIS-16d [Sinorhizobium fredii NGR234] gi|227819591|ref|YP_002823562.1| transposase number 1 for insertion sequence NGRIS-16e [Sinorhizobium fredii NGR234] gi|227820371|ref|YP_002824342.1| transposase number 1 for insertion sequence NGRIS-16f [Sinorhizobium fredii NGR234] gi|227822209|ref|YP_002826180.1| putative transposase number 1 for insertion sequence NGRIS-16h [Sinorhizobium fredii NGR234] gi|227823694|ref|YP_002827667.1| putative transposase number 1 for insertion sequence NGRIS-16 [Sinorhizobium fredii NGR234] gi|36959087|gb|AAQ87512.1| Putative integrase/recombinase Y4QK [Sinorhizobium fredii NGR234] gi|227337828|gb|ACP22047.1| putative transposase number 1 for insertion sequence NGRIS-16a [Sinorhizobium fredii NGR234] gi|227338103|gb|ACP22322.1| putative transposase number 1 for insertion sequence NGRIS-16b [Sinorhizobium fredii NGR234] gi|227338151|gb|ACP22370.1| putative transposase number 1 for insertion sequence NGRIS-16c [Sinorhizobium fredii NGR234] gi|227338579|gb|ACP22798.1| putative transposase number 1 for insertion sequence NGRIS-16d [Sinorhizobium fredii NGR234] gi|227338590|gb|ACP22809.1| putative transposase number 1 for insertion sequence NGRIS-16e [Sinorhizobium fredii NGR234] gi|227339370|gb|ACP23589.1| putative transposase number 1 for insertion sequence NGRIS-16f [Sinorhizobium fredii NGR234] gi|227341209|gb|ACP25427.1| putative transposase number 1 for insertion sequence NGRIS-16h [Sinorhizobium fredii NGR234] gi|227342696|gb|ACP26914.1| putative transposase number 1 for insertion sequence NGRIS-16 [Sinorhizobium fredii NGR234] Length = 286 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 36/278 (12%), Positives = 90/278 (32%), Gaps = 18/278 (6%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS- 132 L + +L+ ++ S+ + R G ++ + +R+ + S Sbjct: 7 LRRRMIEDMTIRNLSPATQRSYLHAVTKFSRYFGRSP-DRLGLEDVRAFQVHLVSSGLSW 65 Query: 133 --AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 Q + ++R F + + + + +++ +F Sbjct: 66 PALNQTVCALRFFFGVTLGHAEIPERIA----YARTPAKLPTILNGDEIVRFLEAV-PSL 120 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLLAMT 248 + R A +GLR +++ V ++ I+ + V L + +L + Sbjct: 121 KTRTALTTAYAAGLRATETVSLKVSNIDGERGVIRIEHGKGGKDRNVMLSAQLLHILRVY 180 Query: 249 P----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGA 302 F ++ + ++ ++ AG++K H +R AT ++G Sbjct: 181 WKLVRPQVWLFPGRDESKPIDVQVLHSACRSARAAAGIDKRISVHTLRHSFATHLLESGT 240 Query: 303 TAHELMATYGWKTVDQAETYTKGADRI-RLGIKNSRRI 339 + G + YTK ++ + R R+ Sbjct: 241 DIRIIQVLLGHNNLSTTARYTKVSNTLIRATTSPLDRL 278 >gi|293372055|ref|ZP_06618451.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|19068096|gb|AAL29907.1| putative integrase [Bacteroides fragilis] gi|292632989|gb|EFF51573.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] Length = 407 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 46/343 (13%), Positives = 88/343 (25%), Gaps = 32/343 (9%) Query: 23 YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY-INSPRKKPTTLKWLISEYRKS 81 Y K R + + + + Y S Sbjct: 74 YLIDKPRTPAERQQNKETLELATKIRAEREQEFKESMLGYRLKKDRTVNFLDYFQAYINS 133 Query: 82 AHWGSLAVNSRISFES---YFDQIIRKSGD--------FDYRKITTKHIRSGVESRKHT- 129 ++ + + IT + + V + Sbjct: 134 Y--------TKKDIRMVQIALSRFKDFLKEQYPMNEFSIKPELITKEMMEQFVAYLQSRS 185 Query: 130 -PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187 A + + ++A+ + + +PC SV + + Q + Sbjct: 186 VGEGAKSIYQRFKKVIRYAIDHDVMLKDPCKSVTCKVDSQMLRKDVLSPEEIQKLAACHY 245 Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL- 244 E R AF F LY GLR D +++ +K +++ T + L Sbjct: 246 DNENPNVRRAFIFCLYCGLRFCDVKDLTYKNVDYANRLLKFEQSKTKGHSASSGVVIPLN 305 Query: 245 --LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 L K +AG++K S H R A + Sbjct: 306 DGLLSIIGEAPVDKNCLIFNLPTYESCCKSVKRWVKRAGIDKHISWHCARHSFAVNILNN 365 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343 GA + + G + E YT+ D +L + + + Sbjct: 366 GANIKTVASLLGHSGLKHTEKYTRAVD--KLKEEAINSLPELK 406 >gi|300765731|ref|ZP_07075708.1| integrase [Listeria monocytogenes FSL N1-017] gi|300513604|gb|EFK40674.1| integrase [Listeria monocytogenes FSL N1-017] Length = 400 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 56/372 (15%), Positives = 107/372 (28%), Gaps = 59/372 (15%) Query: 13 KERTRHGKIIYYFRKG---HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 ++R+++ G G IR + L + E Sbjct: 15 EQRSKN-SWRMRVTVGYDYKGTPIRAGRTTRTKNEREREKELRNFITELEQNGYTAPARM 73 Query: 70 TLKWLIS-EYRKSAHWGSLAVNSR-ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127 T K + EY +L V + ++S + G KITT HI + V + Sbjct: 74 TFKAFVENEYMPKHAQNNLEVKTWTEYYKSIVARAYPAFGGVQMDKITTLHIVNLVAKLQ 133 Query: 128 H--------------------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167 +P S ++ +F+ AV + + INP V PK Sbjct: 134 KPGARLDVKPTDSDEKKNKPLSPRSIRNIYFAINSVFETAVEWKVIPINPAEGVRLPKTT 193 Query: 168 TEGIRPWTKEDMQQFKSF-WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226 +T +++ + E + ++ L SG R ++ V+H+ I Sbjct: 194 KRPPTIYTPAEIELLNAALVKEPLRLQVMIYIALISGCREAELAALEVKHVNLIEDEITF 253 Query: 227 QKT---------------------GTIITVELPDGFMKLLAM---------TPIGKETFF 256 ++T I L + ++ + F Sbjct: 254 EQTLVAKAGEGLLLKESTKNDVAGIVSIPAWLTNLIETYISNEVLDLKTEGKWANHKFLF 313 Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKT 315 N + + + +K + + H +R SAT+ + G + K+ Sbjct: 314 ANMEGKPIRPDSIYQRWKRFLERHNLPVIRFHDLRHTSATLLLNKGRDIKIIQERLRHKS 373 Query: 316 VDQA-ETYTKGA 326 Y Sbjct: 374 SVTTSNIYAHVL 385 >gi|296446473|ref|ZP_06888416.1| integrase family protein [Methylosinus trichosporium OB3b] gi|296255969|gb|EFH03053.1| integrase family protein [Methylosinus trichosporium OB3b] Length = 446 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 55/353 (15%), Positives = 101/353 (28%), Gaps = 40/353 (11%) Query: 25 FRKGHGRRIR--LPYPHESTFIPAYMSALTGSTPKRE-----YINSPRKKPTTLKWLISE 77 +R GR R + T A A + + + T+ L Sbjct: 55 YRTPDGRPRRAVIGRFGLMTVEEARDLAHEKLVAVSKGLDPFAAEAESEGRVTVAELCDW 114 Query: 78 YRKS--------AHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128 Y + ++ S D I G + I + Sbjct: 115 YLADAETGRILGRRRRPIKASTLAMDRSRIDSHIKPLLGRRQVGALKLGDIEAAQADIAA 174 Query: 129 TPSS-----------------AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 ++ A + L+++ +F+ AVR + NP V R Sbjct: 175 GKTAKARKGSRGGATTGGEGVAARTLSTLHAIFEHAVRVGKIPSNPAKGVRRLASAPRER 234 Query: 172 RPWTKEDMQQFKS-----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226 R E + K+ E A FLL +G R + L +I+ Sbjct: 235 RLSRAEIERLGKTLRAAAEDGEHPTALAAIRFLLMTGFRRMEGLGVERGWLDEEEGAIRF 294 Query: 227 QKTGTIITVELP-DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NK 284 T + + + LL P K FF D + + +A + + Sbjct: 295 PDTKSGAQTRVIGQAAIDLLLARPEAKSPFFFPADWGEGHFIGVVRVLDRICERARLADI 354 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 + H +R A+++ D G + + A G + + Y + +R+ Sbjct: 355 TPHTLRHTFASLAGDLGFSELTIAALLGHASRGVTQRYIHIDEALRMAADRVA 407 >gi|222112699|ref|YP_002554963.1| integrase family protein [Acidovorax ebreus TPSY] gi|221732143|gb|ACM34963.1| integrase family protein [Acidovorax ebreus TPSY] Length = 399 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 54/368 (14%), Positives = 108/368 (29%), Gaps = 26/368 (7%) Query: 7 LPPFVTKERTRHGKI----IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62 L P + T G+ Y G R+ L E T A A R + Sbjct: 27 LVPGFLCKITPAGRKVFMLQYRTNAGERRKPALGLYGELTVEQARSLAQEWLAEVRRGGD 86 Query: 63 SPRKKPT-----TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITT 116 K T+K L +++ + +++ +++ D+ I+ G + + Sbjct: 87 PSAAKAAARSAPTVKELCTKFMEDYSKQRNKPSTQRGYQAVIDRCIVPMLGRLKVQDVKR 146 Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + + ++ H P+ A + + MR +F A + P Sbjct: 147 PDVATAMKKMAHKPAEANRAFSVMRKMFNLAEVWGHRPDGTNPCRHVPMYPNGRATHLIS 206 Query: 177 EDMQQFKSFWSEGSQPR--------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228 ++ E + LA R S+ + + + Sbjct: 207 DEDMGKLFRRLEHIEAEGLENYVIPLAIRLQFEFAGRRSEIVTLRWDWVDLDNRRVVWPD 266 Query: 229 TGTIITVELPDGFMKLL-----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG-V 282 + T + L ++ + + ++ + AG Sbjct: 267 SKTGGMSKPMSEEAYRLLSTAPRQEGTPYVLPSPSHPGKHLTTGEYYGGWSRALKAAGAT 326 Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR--IRLGIKNSRRIS 340 + HG+R SAT A++G MA KTV Y D + + R Sbjct: 327 HVGTHGIRHRSATDIANSGIPVKVGMALTAHKTVAMFMRYVHTEDDPVRKAAELVANRRK 386 Query: 341 SVVDSDDP 348 ++ ++ P Sbjct: 387 TITEAQRP 394 >gi|254230112|ref|ZP_04923508.1| tyrosine recombinase XerC [Vibrio sp. Ex25] gi|151937357|gb|EDN56219.1| tyrosine recombinase XerC [Vibrio sp. Ex25] Length = 266 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 39/251 (15%), Positives = 84/251 (33%), Gaps = 18/251 (7%) Query: 99 FDQIIRKSGDFDYRKITTKHIRS---GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155 Q + + G D+ ++ +R SS L+S+R F + + + ++ Sbjct: 1 MAQHLAEMGLKDWSQVDAGWVRQLAGKGMREGMKASSLATRLSSLRSFFDFLILRGEMSA 60 Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRA 212 NP V P++K + +++ Q + + R E + +GLR ++ Sbjct: 61 NPAKGVSAPRKKRPLPKNLDVDEVSQLLEVNEDDPLAVRDRAMMELMYGAGLRLAELVSV 120 Query: 213 GVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT--------PIGKETFFINNDKQK 263 V+ +Q ++ V + +A G+ F++ + Sbjct: 121 DVRDVQLRSGELRVIGKGDKERKVPFSGMATEWVAKWLKVRGDLAAPGEPALFVSKLGTR 180 Query: 264 MNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321 ++ K V + S H +R AT ++ + G + + + Sbjct: 181 ISHRSVQKRMAEWGQKQSVASHISPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQI 240 Query: 322 YTKGADRIRLG 332 YT D L Sbjct: 241 YTH-LDFQHLA 250 >gi|154505593|ref|ZP_02042331.1| hypothetical protein RUMGNA_03132 [Ruminococcus gnavus ATCC 29149] gi|166032352|ref|ZP_02235181.1| hypothetical protein DORFOR_02055 [Dorea formicigenerans ATCC 27755] gi|153794032|gb|EDN76452.1| hypothetical protein RUMGNA_03132 [Ruminococcus gnavus ATCC 29149] gi|166028075|gb|EDR46832.1| hypothetical protein DORFOR_02055 [Dorea formicigenerans ATCC 27755] Length = 387 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 50/387 (12%), Positives = 118/387 (30%), Gaps = 69/387 (17%) Query: 17 RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76 + G F Y ++ + + + + ++ + TL Sbjct: 4 KSGIYRGRFYYKGET-----YTKDNADLKKLVQEMEDLRYEVKHGLKGKGDNITLDTWFD 58 Query: 77 EYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRK---HTPSS 132 + + ++ ++++ ++ ++ + I ++ G + +++ ++ + Sbjct: 59 IWLNTHKKRTIKESTQVRYDDFYRRYIKKQIGKQRVADFNPIILERLLQNMADDDYSTKT 118 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 + +FK+AV + NPC VE PK KT+ IR T ++ ++ E Sbjct: 119 IRDVYNILNAMFKYAVHNRILTFNPCAGVEVPKTKTKQIRVLTVKEQREVLEHAKERIHE 178 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNN----------------------IFSIKTQKTG 230 L L +G+R + + + Sbjct: 179 NLIQV-ALGTGMRGGELLGLTWDDVDFRKREISVNKTLVYIKDKETKKYVFKYQTPKTKN 237 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQ-----------------KMNATQFSIWF 273 +I T+ + D K L I + ++ + + F + Sbjct: 238 SIRTIPMQDSVYKALKRQWIQLKEMQLSASEWQPLEGFENLVFVGKNGKPITEHTFQVTL 297 Query: 274 --------KAKATKAGVNKS---------AHGVRKFSATISADAGATAHELMATYGWKTV 316 K + +A NK+ H +R AT +AG A + G ++ Sbjct: 298 DWIEKSINKERKKQAEKNKTVFIPIPHFYPHALRHTFATRCFEAGIDAKVVQGFLGHYSI 357 Query: 317 D-QAETYTKGADRIRLGIKNSRRISSV 342 + YT D ++ ++ Sbjct: 358 AITLDLYTHVTDDK--AKSEMDKLQNL 382 >gi|308125862|ref|ZP_07663544.1| tyrosine recombinase XerC [Vibrio parahaemolyticus K5030] gi|308111049|gb|EFO48589.1| tyrosine recombinase XerC [Vibrio parahaemolyticus K5030] Length = 266 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 37/251 (14%), Positives = 82/251 (32%), Gaps = 18/251 (7%) Query: 99 FDQIIRKSGDFDYRKITTKHIRS---GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155 Q + + G D+ ++ +R SS L+S+R F + + + ++ Sbjct: 1 MAQHLAEMGLKDWSQVDAGWVRQLAGKGMREGMKASSLATRLSSLRSFFDFLILRGEMSA 60 Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRA 212 NP V P++K + +++ Q + + R E + +GLR ++ Sbjct: 61 NPAKGVSAPRKKRPLPKNLDVDEVNQLLEVNEDDPLAIRDRAMMELMYGAGLRLAELVSV 120 Query: 213 GVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK--------ETFFINNDKQK 263 V+ +Q ++ V + + + F++ + Sbjct: 121 DVRDVQLRSGELRVIGKGDKERKVPFSGMATEWVGKWLRVRGDLAAPGEPALFVSKLGTR 180 Query: 264 MNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321 ++ K V + S H +R AT ++ + G + + + Sbjct: 181 ISHRSVQKRMAEWGQKQSVASHISPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQI 240 Query: 322 YTKGADRIRLG 332 YT D L Sbjct: 241 YTH-LDFQHLA 250 >gi|258543088|ref|YP_003188521.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-01] gi|256634166|dbj|BAI00142.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-01] gi|256637226|dbj|BAI03195.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-03] gi|256640278|dbj|BAI06240.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-07] gi|256643335|dbj|BAI09290.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-22] gi|256646390|dbj|BAI12338.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-26] gi|256649443|dbj|BAI15384.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-32] gi|256652429|dbj|BAI18363.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655487|dbj|BAI21414.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-12] Length = 291 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 30/251 (11%), Positives = 77/251 (30%), Gaps = 10/251 (3%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP-SSAIQFLTSMRVL 143 + + N+ ++ + + R + I++ +S S+ + +++++ L Sbjct: 32 HNRSSNTVRAYRTNVAEFARFVA-KPMADVALADIQAWNDSMADAADSTRRRKISAVKSL 90 Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203 + + ++ + + + + + + L +G Sbjct: 91 LTYGHKLGFLPQDAGAAFRMERGRDNLNERILSRQQVLAMLAGEKDPRRHALLALLYGTG 150 Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP------DGFMKLLAMTPIGKETFFI 257 LR S++C + + G + + Sbjct: 151 LRISEACALRWRDMTRRQSGGIATVFGKGGKTRHVQVSPSLWKEIAAVRSDVGPDAPVIP 210 Query: 258 NNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKT 315 +D ++ K A +AG+ SAH +R A+ DAG H + A G + Sbjct: 211 GHDGGLLHERAVDRVVKRAAKRAGLPPDVSAHWLRHAFASHQLDAGQPVHWVQAQLGHSS 270 Query: 316 VDQAETYTKGA 326 + Y+ + Sbjct: 271 LATTTRYSHAS 281 >gi|9628601|ref|NP_043466.1| integrase [Haemophilus phage HP1] gi|138561|sp|P21442|VINT_BPHP1 RecName: Full=Integrase gi|459175|gb|AAB09182.1| integrase [Haemophilus phage HP1] Length = 337 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 42/331 (12%), Positives = 85/331 (25%), Gaps = 30/331 (9%) Query: 12 TKERTRHGKII--YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 ++ T++GK + Y R+ L F T + + + S Sbjct: 3 VRKDTKNGKWLAEVYVNGNASRKWFLTKGDALRFYNQAKEQTTSAVDSVQVLESSDLPAL 62 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--- 126 + + E+ H +L+ + + + GD + K + R Sbjct: 63 SF--YVQEWFD-LHGKTLSDG--KARLAKLKNLCSNLGDPPANEFNAKIFADYRKRRLDG 117 Query: 127 --------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 ++ + +R +F L R ++ E + E Sbjct: 118 EFSVNKNNPPKEATVNREHAYLRAVFNELKSLRKWTTENPLDGVRLFKERETELAFLYER 177 Query: 179 MQQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 + S+ L L +G R S++ + + K+ TV Sbjct: 178 DIYRLLAECDNSRNPDLGLIVRICLATGARWSEAETLTQSQVMPYKITFTNTKSKKNRTV 237 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSAT 295 + +L F + + H +R A+ Sbjct: 238 PISKELFDMLPKKRGRLFNDA---------YESFENAVLRAEIELPKGQLTHVLRHTFAS 288 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGA 326 G L G T++ Y A Sbjct: 289 HFMMNGGNILVLKEILGHSTIEMTMRYAHFA 319 >gi|310658536|ref|YP_003936257.1| site-specific integrase/recombinase [Clostridium sticklandii DSM 519] gi|308825314|emb|CBH21352.1| putative site-specific integrase/recombinase [Clostridium sticklandii] Length = 334 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 37/321 (11%), Positives = 85/321 (26%), Gaps = 45/321 (14%) Query: 62 NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-----SGDFDYRKITT 116 ++ P K + + + + N+ +S+ + I Sbjct: 12 KIDKEIPNAFKMYVKLFTNALISSGKSNNTVVSYYLDIKTFFDYCSISEILSQEITDIRP 71 Query: 117 KHIRSGVES----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS-----------V 161 HI S R + S + M++ F + Q + NP Sbjct: 72 IHINSYYTHLVSVRDNNSISIKRKKYVMKLFFDFLEEQNEINKNPIPKDSVIKAKIKNPY 131 Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221 + P + + + F L+++GLR +++ + + I Sbjct: 132 KAPTYLEIEEIKKINKAILDTNKNEFTKIRNLFIFNLLIHTGLRINEALNLDLSDFEQGI 191 Query: 222 FSIKTQKT---GTIIT------------------VELPDGFMKLLAMTPIGKETFFINND 260 + + + + L T FI+ Sbjct: 192 NTNRLYVKGKGEKERYLPIELNSTFFQIYEEGFVYNFAERYFTLRNKTKTSNCALFISKR 251 Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 ++ + + A +NK + H +R AT G + G ++ Sbjct: 252 GDRLTSRYVQKNLQELRLSANLNKNVTPHKLRHTFATHLLKNGTNIRLVQELLGHSSIST 311 Query: 319 AETYTKGADRIRLGIKNSRRI 339 + YT + + ++ Sbjct: 312 TQIYTHS--NSKDLDEAIKKF 330 >gi|320107543|ref|YP_004183133.1| integrase family protein [Terriglobus saanensis SP1PR4] gi|319926064|gb|ADV83139.1| integrase family protein [Terriglobus saanensis SP1PR4] Length = 419 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 54/359 (15%), Positives = 103/359 (28%), Gaps = 35/359 (9%) Query: 11 VTKERTRHGKIIYYFRKGH---GRRI-RLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 + K++ + G ++ FR G+R + +P+ A R IN + Sbjct: 9 LLKQKRKSGPDVWVFRWYDETSGKRTYKKRNLGTVKDLPSRRDAEQAVADFRANINVEVR 68 Query: 67 KPTTLKWLISEYRKSAHWGSLAV-NSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVE 124 P T+ LI+ YRK + S Y + I K G+ + T + + Sbjct: 69 VPITVSELIAHYRKHELTEDKKAFATIASTSIYLTNHIAPKWGEKWLSDVRTVEVEEWLH 128 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 S + P++ + M +F A+R E+ NP V ++ T + Sbjct: 129 SLPYAPATKSKIRNIMSAVFNHAIRYEWTHRNPITKVRASSKRLREPDVLTPGEFSAL-- 186 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG------------TI 232 + + +GLR S+ + + + I ++ + Sbjct: 187 VEELPLRVKAMVILAGSTGLRRSELVALTWRDVDPLLMQINVLRSCVRGRFGDTKTEASR 246 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT----------QFSIWFKAKATKAGV 282 V L ++ L + ++ + +A + Sbjct: 247 KPVPLHTSVIECLDVWRKESRYNGEDDFLFPSVRNEGRTPVTPDMILKKIIRPALVRAKI 306 Query: 283 NK---SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGAD-RIRLGIKNS 336 H R AT AGA + YT+ R Sbjct: 307 TGKRIGWHSFRHSLATNLRAAGADLKTAQELLRHANSRITLDIYTRAISANKREANNKV 365 >gi|237722726|ref|ZP_04553207.1| site-specific recombinase [Bacteroides sp. 2_2_4] gi|293373709|ref|ZP_06620056.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|301311822|ref|ZP_07217744.1| tyrosine type site-specific recombinase [Bacteroides sp. 20_3] gi|317473969|ref|ZP_07933248.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] gi|229448536|gb|EEO54327.1| site-specific recombinase [Bacteroides sp. 2_2_4] gi|292631364|gb|EFF49995.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|300829924|gb|EFK60572.1| tyrosine type site-specific recombinase [Bacteroides sp. 20_3] gi|316909811|gb|EFV31486.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] Length = 381 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 56/379 (14%), Positives = 101/379 (26%), Gaps = 40/379 (10%) Query: 2 TPSLRLPPFVTKERTRHGKIIYYFR-KGHGRRIR-------LPY--PHESTFIPAYMSAL 51 + L+ P V ++ G YY G+R LP P A +A+ Sbjct: 7 STRLKEPVKVRTKKLADGSESYYLDIYVDGKRSYEFLKLYLLPEINPMVKEQNRATKAAV 66 Query: 52 TGSTPKR---------EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI 102 KR + + L + Y + + Sbjct: 67 EAIKSKRIIELTHSKAGLKKTSVRSKMLLDDWMEAYLAEQERKG--ARGLKLLRTVCRLL 124 Query: 103 IRKSGDFDYRKITTKHIRSGVESRKH----------TPSSAIQFLTSMRVLFKWAVRQEY 152 R+I ++ +H +P SA ++ AVR E Sbjct: 125 PLYKKKVKMREIDKDWCLGFIDWIQHTYKTRWDKPLSPKSAADYVGYFSTALNAAVRAEV 184 Query: 153 VAI---NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209 + + ER K T ++++ + A+ F Y GLR SD Sbjct: 185 IPENPIMTLAATERIKVPESKREYLTIDEIKVLIDTECPREDVKRAYLFACYCGLRLSDV 244 Query: 210 CRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT-- 267 + + + + T + + + Sbjct: 245 YALRWKDIVQDGEQYRMSTVMQKTTTPIYLPLSRHAVRWLPERNGAEDGLHVFAGLPAEP 304 Query: 268 QFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 + AG+NK + H R AT+ GA + G V + Y K Sbjct: 305 NINKVLAKWMATAGINKKITYHTSRHTFATMMLTLGADLYTTSKLLGHANVKTTQIYAKI 364 Query: 326 ADRIRLGIKNSRRISSVVD 344 D + ++ + +V Sbjct: 365 VDSKK--VEAVNLVDNVFG 381 >gi|42525368|gb|AAS18383.1| Int1 DNA integrase [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 372 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 35/303 (11%), Positives = 84/303 (27%), Gaps = 52/303 (17%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132 ++ + R+ + ++ + ++ + IR G + + + + + + S Sbjct: 16 VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 ++ L + + + + RP+ T +++ + + Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230 RL + L +G+R S+ + V+ L + +I ++ Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193 Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265 + + A + + M Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253 Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 F FK +AG+ K + H +R AT +G + G V YT Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313 Query: 324 KGA 326 Sbjct: 314 HVL 316 >gi|289428621|ref|ZP_06430304.1| phage integrase, N-terminal SAM domain protein [Propionibacterium acnes J165] gi|295131071|ref|YP_003581734.1| site-specific recombinase, phage integrase family [Propionibacterium acnes SK137] gi|289158019|gb|EFD06239.1| phage integrase, N-terminal SAM domain protein [Propionibacterium acnes J165] gi|291376498|gb|ADE00353.1| site-specific recombinase, phage integrase family [Propionibacterium acnes SK137] Length = 300 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 40/291 (13%), Positives = 95/291 (32%), Gaps = 28/291 (9%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGVESRKHTPS 131 + ++ + N+ + + ++ GD +I T +R+ + + + Sbjct: 7 VEDFCGHLSALRRSPNTIRGYRADLIDLMGHAHSHGDDTLGRIGTSQVRAWLADTRVAGA 66 Query: 132 SAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI---------RPWTKEDM 179 SA + ++ RV F+WA + ++ +P ++ K + Sbjct: 67 SAATMQRRWSAARVFFRWAANEGLISADPTTALNSAKVPKRLPATLGVDQARHILDEAVA 126 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELP 238 Q G++ E L GLR + C + + T K TV + Sbjct: 127 QARHDESPHGARDAAILEVLYGGGLRVGELCGLDLGDVDRSRRTVKVTGKGDKERTVPMG 186 Query: 239 DGFMKLLAMTPIGKETFFINN---------DKQKMNATQFSIWFKAKATKAG--VNKSAH 287 ++ + +E + + ++++ + H Sbjct: 187 APALRAIDTWLPRREEWVGPHSGQALFLGARGRRIDQRVVRRVVHTHLRAEPDSPDLGPH 246 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337 G+R AT + GA + G +++ + YT + +R+R + + Sbjct: 247 GLRHAMATHLLEGGADLRTVQDILGHESLATTQIYTHVSTERLRTAFRQAH 297 >gi|300112795|ref|YP_003759370.1| integron integrase [Nitrosococcus watsonii C-113] gi|299538732|gb|ADJ27049.1| integron integrase [Nitrosococcus watsonii C-113] Length = 327 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 35/303 (11%), Positives = 73/303 (24%), Gaps = 48/303 (15%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 L+ + R++ ++ + ++ + + I G + I + + A Sbjct: 12 LLDQVREAIRVRHYSIRTEQAYLGWIKRFIFFHGKRHPGDMGKAEISAFLTHLAIKGKVA 71 Query: 134 IQFL-TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 ++ + + VER K+ + +T ++++ + +G Sbjct: 72 ASTQNQALNAILFLYREVLKRDVGWLDEVERAKKPSRLPVVFTPNEVRKVLALLPQGKWV 131 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------------------- 232 + + L R + +++ K Sbjct: 132 MASLLYGSGLRLMECMRLRVEDADFHYHQITVRDGKGRKDWVTVLPKKLFKPLQVQLKTV 191 Query: 233 --------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF--------------- 269 L F Sbjct: 192 KALHQQDLREGCGAVYLPYALEKKYPNANREFGWPYVFPACKRAIDPSSGVVRRHHLSET 251 Query: 270 --SIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 K KAG+NK S H R AT + G + G K V+ YT Sbjct: 252 ALQQAVKNAIRKAGINKPGSCHTFRHSFATHLLENGYDIRTIQELLGHKDVNTTMIYTHV 311 Query: 326 ADR 328 +R Sbjct: 312 LER 314 >gi|256964200|ref|ZP_05568371.1| phage integrase [Enterococcus faecalis HIP11704] gi|256954696|gb|EEU71328.1| phage integrase [Enterococcus faecalis HIP11704] Length = 382 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 51/368 (13%), Positives = 109/368 (29%), Gaps = 54/368 (14%) Query: 11 VTKERTRHGKIIYYFRK--------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62 + + + ++G+ +YF+ G + AL + + Sbjct: 2 IKQYKKKNGEKAWYFKTYLGTDPLTGKKKYTTKRGFRTQKEAK---IALARLEMEIQKNG 58 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122 P T + + + ++ + + + I+ G + KI+T + + Sbjct: 59 IPSSTNITFQEVAFMWLENYKNTVKESSYSRTEIIFRKHILPSFGKIEISKISTAYCQKI 118 Query: 123 VESRKHTPSSAIQ--FLTSMRVLFKW-----AVRQEYVAINPCLSVERPKRKTEGIRPWT 175 V + SS F+ M +FK+ Q V + + I+ +T Sbjct: 119 VNTWHSEGSSKQYPLFINYMNQVFKFAINIGVTNQNPVINVIVPKNQDIITSEKKIKFYT 178 Query: 176 KEDMQQFKSFW------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------- 218 K+ +Q F + F L +SG R + L Sbjct: 179 KDQLQIFLKSIEQSESTYITIRDYTLFRLLAFSGCRIGELLALTWDDLNIKTGELQINKT 238 Query: 219 -----NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA------- 266 + S + + T+ L + +L + ++ + + + + Sbjct: 239 IAKSDHYYVSNTPKTKKSNRTLILDAKTITILKKWKLEQKKYLLKLGYTQPSRIFTNEEN 298 Query: 267 -----TQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA- 319 + + KA + HG R A++ AGA E G + Sbjct: 299 EFTINQAITDRYNIYRKKANLPNIGLHGFRHTHASLLYYAGADHKEAQERLGHANIKTTL 358 Query: 320 ETYTKGAD 327 +TYT + Sbjct: 359 DTYTHLTN 366 >gi|256545162|ref|ZP_05472528.1| tyrosine recombinase XerC [Anaerococcus vaginalis ATCC 51170] gi|256399203|gb|EEU12814.1| tyrosine recombinase XerC [Anaerococcus vaginalis ATCC 51170] Length = 331 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 44/304 (14%), Positives = 95/304 (31%), Gaps = 57/304 (18%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQII---------------------------------R 104 Y KS L+ + + I Sbjct: 16 YLKSIRA--LSEKTISEYHYDLINFISYQILRKVYFDDKEKFDYDLKKSNIDSNKIFNQA 73 Query: 105 KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVER 163 D + + + +I S+ + ++++R +K+ E + N + Sbjct: 74 FINDINIQDM-YSYISYLDNELNDNTSTRSRKISALRSFYKYLHQEIEIIDNNITEKLRN 132 Query: 164 PKRKTEGIRPWTKEDMQQ------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217 PK + T + + + ++ L +G+R S+ ++ + Sbjct: 133 PKIQKRQPVYLTLSETEHLLEIVSQEKNEFLKNRDMAIVFTFLTTGMRLSELVSVDLKDI 192 Query: 218 QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF---------FINNDKQKMNATQ 268 +++ FSI + T+ L + L+ ++ + FI+ KQ+++ Sbjct: 193 KDDHFSIIGKGN-KERTIYLTKNCIDLIKNYIKIRKKYLKDKKIDALFISTRKQRISNRA 251 Query: 269 FSIWFKAKATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTK 324 + KAG + S H +R +AT+ G L G ++V + YT Sbjct: 252 VQSTVEKYLEKAGFDTKIYSTHKLRHTAATLMYKYGNVDIRALKDVLGHESVSTTQIYTH 311 Query: 325 GADR 328 D Sbjct: 312 LDDE 315 >gi|221218583|ref|YP_002527541.1| class 1 integron integrase protein IntI1 [Escherichia coli] gi|261888715|ref|YP_003264403.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|215252911|gb|ACJ63570.1| class 1 integron integrase protein IntI1 [Escherichia coli] gi|261857302|emb|CBA11369.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|312949085|gb|ADR29911.1| class 1 integron integrase protein IntI1 [Escherichia coli O83:H1 str. NRG 857C] Length = 372 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 35/303 (11%), Positives = 84/303 (27%), Gaps = 52/303 (17%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132 ++ + R+ + ++ + ++ + IR G + + + + + + S Sbjct: 16 VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 ++ L + + + + RP+ T +++ + + Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230 RL + L +G+R S+ + V+ L + +I ++ Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193 Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265 + + A + + M Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253 Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 F FK +AG+ K + H +R AT +G + G V YT Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313 Query: 324 KGA 326 Sbjct: 314 HVL 316 >gi|126699683|ref|YP_001088580.1| integrase [Clostridium difficile 630] gi|115251120|emb|CAJ68951.1| putative integrase [Clostridium difficile] Length = 370 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 46/365 (12%), Positives = 109/365 (29%), Gaps = 38/365 (10%) Query: 13 KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 ++R ++ + F + + L T+ Sbjct: 6 RKRNKNYVVYLEFEDEKTGKRKQKNMGTFDKKREASKRLNEVKESLYNDGFLVPSEITVS 65 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT-- 129 + ++ ++++ + ++ S I G + + + HI++ ++ + Sbjct: 66 EFLLDFLNKYS-ENISLATYNNYVSICKNYINPSIGKYKIQDLHPVHIQNYIDKLSYKLN 124 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 P S + +++ K A R + + N S++ P+ K + +E M + + Sbjct: 125 PQSIKIHINILKLAIKRAYRLKLIKENVMDSIKAPRYKKFKNEIYDREQMIKLLDLA-KN 183 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------------I 233 ++ L + GLR S+ ++ +I K + Sbjct: 184 TEMELPINLAIGLGLRISEVLGLTWDNIDFEENTITVNKITSRINGSVILKEPKTESSVR 243 Query: 234 TVELPDGFMKLLAMTPIGKETF-------------FINNDKQKMNATQFSIWFKAKATKA 280 + P M LL I + F N + + S FK K Sbjct: 244 KISSPKELMSLLKEYKIKQNKNLLKSSIRNNNNLLFFNKKCEPIAEDVMSKKFKRFLEKN 303 Query: 281 GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRR 338 + H +R T+ ++ + G + Y+ + + S + Sbjct: 304 ELPHIRFHDLRHSHVTLLINSKVPIKVISERVGHSNISTTLSVYSHVL--KEMDKEASDK 361 Query: 339 ISSVV 343 IS + Sbjct: 362 ISESL 366 >gi|330988880|gb|EGH86983.1| integrase family protein [Pseudomonas syringae pv. lachrymans str. M301315] Length = 325 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 47/314 (14%), Positives = 104/314 (33%), Gaps = 15/314 (4%) Query: 18 HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77 +G RK + + S + G ++ ++++ + TTLK + Sbjct: 9 NGTWRTKIRKKGYPSLS-ASFDTKAEAQRWASEIEGDMSRKRFVDTREAESTTLKQALDR 67 Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAI 134 Y + + K G +I + + ++R + ++ Sbjct: 68 YEREVSAQKKGARQEKT--RIKTWAESKYGTKSMAEIRSSDLAEYRDARLAEGMSTNTVR 125 Query: 135 QFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-EGSQ 191 L + L+ A++ + NP + PK E R T +++ S ++ Sbjct: 126 LSLALISHLYTVAIKDWGIEGLSNPVTKLRMPKGSRERDRRPTAKELSAVLKAASAIHAE 185 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251 + E + + +R + +H++ ++ K G+ V L LL P Sbjct: 186 MPVIIELAIETAMRRGELMTLRREHIRGKHVLLEDTKNGSRRLVPLSIRARALLDSLPAR 245 Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSATISADAGATAHELMAT 310 + + + S +F A ++ H +R + + G + E + Sbjct: 246 IDGGVFSL-----SPHSVSQYFLKSCRAAKVIDLHFHDLRHEGTSRLFEKGFSIMEAASI 300 Query: 311 YGWKTVDQAETYTK 324 G KT+ + YT Sbjct: 301 TGHKTMSMLKRYTH 314 >gi|315122595|ref|YP_004063084.1| phage-related integrase/recombinase [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495997|gb|ADR52596.1| phage-related integrase/recombinase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 151 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 76/141 (53%), Positives = 103/141 (73%), Gaps = 1/141 (0%) Query: 1 MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60 M+ + +LP FV +E+TRHGKIIYYFRKG R RLP P + +F+PAY+SAL+G ++ Sbjct: 1 MSRNTKLP-FVVREKTRHGKIIYYFRKGKDDRTRLPIPSDPSFMPAYLSALSGIPIEQSS 59 Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 I K+P T++WLI +YRKS HW SLA+ +R + F II+ SGDF+Y+KIT KHIR Sbjct: 60 IKPVIKEPQTMRWLIEQYRKSGHWASLALKTRKRIDQDFSNIIKNSGDFEYKKITAKHIR 119 Query: 121 SGVESRKHTPSSAIQFLTSMR 141 G+E RK TP+SA+ FL+S+R Sbjct: 120 LGLEHRKSTPASAVLFLSSIR 140 >gi|283769290|ref|ZP_06342191.1| site-specific recombinase, phage integrase family [Bulleidia extructa W1219] gi|283104100|gb|EFC05482.1| site-specific recombinase, phage integrase family [Bulleidia extructa W1219] Length = 327 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 35/280 (12%), Positives = 83/280 (29%), Gaps = 17/280 (6%) Query: 56 PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115 E + + + + + S +++ + ++ + D + I Sbjct: 37 EVIEKQQQEKNSEQNF---VELFLSAKRIEGCSEKSLKYYKATIEAMLDEL-KKDVKHIV 92 Query: 116 TKHIR----SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 T IR + +K + + + F W ++Y+ +P + + K T Sbjct: 93 TDDIRGYLTDYQKKKKSSKVTIDNIRRILSSFFSWLEDEDYILKSPVRRIHKVKTGTNIK 152 Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTG 230 ++ E ++ + +E + + L +G+R + + N I K Sbjct: 153 ETYSDEALELMRDNCTE-LRDLAIIDMLASTGMRVGEMVLLNRNDIDFNERECIVFGKGS 211 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT------QFSIWFKAKATKAGV-N 283 V L + + + + + G+ Sbjct: 212 KERVVYFDARTKIHLQNYLGSRTDDNPALFVSLKSPHERLKIGGVEVRLREFGKQLGLQK 271 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 H R+ AT++ D G +L G + +D Y Sbjct: 272 VHPHKFRRTLATMAIDKGMPIEQLQQLLGHRKIDTTLQYA 311 >gi|325478372|gb|EGC81487.1| site-specific recombinase, phage integrase family [Anaerococcus prevotii ACS-065-V-Col13] Length = 374 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 43/351 (12%), Positives = 102/351 (29%), Gaps = 33/351 (9%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 R G +Y R + + AL + + + Sbjct: 4 YRDESGNKTWYCRFYYTNWKGEKLTKKKRGFSTKKEALKWEQEFLNQHSESI--EMSFRE 61 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRK----- 127 Y++ + N+ + E+ +Q I+ GD +I I Sbjct: 62 FFEIYKRDRKPR-IRENTWRTKEAIVNQKILPYIGDLMLNEINNVTIIQWQNELMKIKDK 120 Query: 128 ----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDMQQF 182 ++P+ + + A R + N V K + + WT+++ ++F Sbjct: 121 NGKNYSPTYLRTIHAQLSSILNHACRYYNLKTNVARDVGSMGEKEADEMLFWTQDEYERF 180 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------- 232 + + AFE L + GLR + + ++K ++ Sbjct: 181 IEAIKDKPESFYAFELLYWCGLRMGELLALTEEKFDFKRHTLKIDESLQRIDGKNVITAP 240 Query: 233 ------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-S 285 T+ +P+ + + + + + K+ V + Sbjct: 241 KTKKSIRTIVMPEFLNDEIKEYIESFYKLKPKDLIFNFSKSYLHHEMDRGSKKSQVKRIR 300 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIK 334 H +R ++ + G +A + G +++D Y + + + Sbjct: 301 IHDLRHSHVSLLIELGFSATAIADRVGHESIDITYRYAHLFPSKQKEMAFS 351 >gi|319412013|emb|CBY91946.1| hypothetical protein [Streptococcus pneumoniae] Length = 298 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 35/281 (12%), Positives = 86/281 (30%), Gaps = 37/281 (13%) Query: 74 LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSGVESRKHT 129 LIS Y L+ ++ ++++ Q + D ++T +I Sbjct: 5 LISTYLDYCKTHKRLSSHTIRAYKNDLMQFYNSNYDNVESYIEELTQSNI---------K 55 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER-PKRKTEGIRPWTKEDMQQFK----- 183 ++ + + ++V + + Q + +P + + + + + ++ Sbjct: 56 TNTLRRKIACIKVFYNYLKYQHIIEESPFNQLRFQFRTEKILPKTIPYDILKNIFSYLEQ 115 Query: 184 --------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTII 233 + + L LL +G+R S+ C ++ + N I + I Sbjct: 116 RVVISKTDYQKQKAERNLLIISLLLSTGIRISELCHIHLKDINLSNKTLHIIGKGKKERI 175 Query: 234 TVELPDGFMKLLAMTPI------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-- 285 LL F + ++ + K + ++K+ Sbjct: 176 LFLGDQTTFNLLETYINKNGKESNDFLFPGKYSPKPLSEQSVRLILKKIVEQNSLSKTIT 235 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 H R AT+ D + G ++ + YT + Sbjct: 236 PHMFRHSFATMLLDNDVDIRYIQQILGHSSISITQIYTHVS 276 >gi|319788822|ref|YP_004090137.1| integrase family protein [Ruminococcus albus 7] gi|315450689|gb|ADU24251.1| integrase family protein [Ruminococcus albus 7] Length = 359 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 55/356 (15%), Positives = 116/356 (32%), Gaps = 48/356 (13%) Query: 6 RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65 R V + +GK Y G A + + + Sbjct: 13 RYEGRVYLGKDENGKRRYKSYYG---------------ATAEEVRRKHELTQFSAVPNIP 57 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124 T+ L +E+ S + ++ ++ II G + + +K I + Sbjct: 58 ASKMTIATLAAEWLLSVQNR-VKESTLENYRLKLKKHIIPSFGAMNCCAVGSKEIYGFMN 116 Query: 125 SR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 ++ + L M+ +FK+A R+ N + PK++++ +R TK++ + Sbjct: 117 AKIGNGLSSRYVSDILVLMKSMFKYAAREYG-FKNVFDGITMPKKQSKEVRLLTKDEENK 175 Query: 182 FKSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------- 232 KS+ +E + + +Y+GLR + C + + ++ +KT Sbjct: 176 LKSYITEKPTLAGMGIALTMYTGLRVGELCALTWADIDLDYRTLTVKKTMQRIQNHEGGG 235 Query: 233 ---------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277 + +P+ +++L F + + M F Sbjct: 236 KTKLIISEPKSEKSRRIIPIPECMIEMLRSFKADDGCFLLTGKDKPMEPRAMQYRFSRLL 295 Query: 278 TKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKG-ADRIR 330 K G+ H +R A+ + + G L G +V+ Y +R R Sbjct: 296 KKLGLPHIHYHALRHGWASRAIELGFDVKTLSEILGHSSVELTMRLYVHSNFERKR 351 >gi|163839844|ref|YP_001624249.1| XerC/XerD family integrase [Renibacterium salmoninarum ATCC 33209] gi|162953320|gb|ABY22835.1| integrase, XerC/XerD family [Renibacterium salmoninarum ATCC 33209] Length = 308 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 45/296 (15%), Positives = 96/296 (32%), Gaps = 29/296 (9%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESY---FDQIIRKSGDFDYRKITTKHIRSGVESR 126 ++S + + + + ++ ++ + +G +I IR + + Sbjct: 10 FNRILSAFNQHLRAERARSEHTIRAYSADVESLMYYAIAAGVRSIDEIDLATIREWLGEQ 69 Query: 127 ---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 S+ + S R L WA+R+E ++++P L ++ PKR+ + M + Sbjct: 70 SSDGLARSTLARRAASTRTLMSWALREELISVDPTLRLKAPKRQKTLPGVLQQNQMARML 129 Query: 184 --------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIIT 234 + + E L +GLR + + L ++ K + Sbjct: 130 ADLASAAEEGSAAALRDLAIVELLYAAGLRVGELAGLDLDDLDFERRTVVVLGKGNKERS 189 Query: 235 VELPDGFMKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVN- 283 V + L F +++ Q ++ G Sbjct: 190 VPFGQPAARALQAWLQTGRPAFYREGSGAALFLGTRGGRIDQRQIRSVVGSRFVALGDTS 249 Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSR 337 S H +R +AT D GA + G ++ + YT DR+R + + Sbjct: 250 ATSPHALRHTAATHLLDGGADLRAVQEILGHSSLATTQIYTHVSVDRLRSSYQQAH 305 >gi|330891180|gb|EGH23841.1| site-specific recombinase, phage integrase family protein [Pseudomonas syringae pv. mori str. 301020] Length = 357 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 44/333 (13%), Positives = 101/333 (30%), Gaps = 25/333 (7%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 +T G RK + + + YI + TL+ Sbjct: 6 KTPSGTWKALIRKTGWPTV-AKTFRTKRDAEDWSRRTEDEMVRGVYIQRSGSERMTLEAA 64 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-------- 126 + Y ++ S ++I G + ++ + I + R Sbjct: 65 LKRYLSDITPTK-KPTTQRGETSKAKKLIEHLGKYSLAALSAEIIAGYRDKRLNEKGRVG 123 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + ++ L + LF A+++ + NP L++ +P R + ++ ++ + Sbjct: 124 TTSNNTVRLELALLSHLFTVAIQEWGLGLTFNPVLNIRKPSPGEGRNRRLSADEERRLMA 183 Query: 185 FWSEGSQPRLAFE--FLLYSGLRCSDSCRAGVQHLQ----------NNIFSIKTQKTGTI 232 + S P L + L +G+R ++ + +T Sbjct: 184 AVNRHSNPMLGWIVGIALETGMRSAEISTLRKPMVDLERRIVKLVDTKNDGQRTVPLSKR 243 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRK 291 T F +K F+ + + + G+ + H +R Sbjct: 244 ATELFKAAMANPARPGDCQLVFFGEPGKDKKRRPYAFTKIWGSLVKELGLSDFRFHDLRH 303 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324 + + + G + E+ A G K++ + YT Sbjct: 304 EAVSRLVEGGLSDQEVSAISGHKSMQMLKRYTH 336 >gi|302383500|ref|YP_003819323.1| integrase [Brevundimonas subvibrioides ATCC 15264] gi|302194128|gb|ADL01700.1| integrase family protein [Brevundimonas subvibrioides ATCC 15264] Length = 300 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 43/299 (14%), Positives = 93/299 (31%), Gaps = 34/299 (11%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP--- 130 I Y + + ++ ++ I + Sbjct: 6 IEAYLEMMAVERDASPHTLSAYARDLADAEASIDGGGLIAADEAAIEAWFAGLAPRGLSA 65 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-- 188 ++A + +++R +++A+ + + +P ++ PK+ R +E++ + + Sbjct: 66 ATAARRRSAIRQFYRFAMGEGWRTDDPSRRLDAPKQGRPLPRTLNREEVVGLLTASAARD 125 Query: 189 ---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKL 244 G + E SGLR S+ V+ ++ + I K G L + Sbjct: 126 GAAGLRMIALVELAYASGLRVSELLGLRVEAVRRDPAYLIVRGKGGKERLAPLNASAREA 185 Query: 245 LAMT------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289 + P F + +F+ A AG++ S H + Sbjct: 186 VKAWLIARDARRPEKAPDSPWLFPSGAASGHLTPRRFAQMLDQAAVDAGIDPARVSPHVL 245 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 R AT + GA + G + + YT + R++ VV+ P Sbjct: 246 RHAFATHLLEGGADLRVVQTLLGHADIATTQIYTHV---------ATDRLTQVVNRHHP 295 >gi|255692294|ref|ZP_05415969.1| phage-related integrase [Bacteroides finegoldii DSM 17565] gi|260622027|gb|EEX44898.1| phage-related integrase [Bacteroides finegoldii DSM 17565] Length = 341 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 39/305 (12%), Positives = 91/305 (29%), Gaps = 41/305 (13%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG--------DFDYRKITTKHIRSG 122 L +EY ++ N+ S+ F ++ + IT K + + Sbjct: 10 LTAFFTEYL--IGERGVSPNTIRSYSESFSLLLNFLDEQVNIKADNLRLEHITRKTVLNF 67 Query: 123 VESR----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIRPWT 175 ++ K + ++ Q L ++R + ++ + + + + + + Sbjct: 68 LDWLQDTKKSSNATRNQRLAALRSFCTYMQYEDVKRLEQWQEILSIKVKTHEKRSVNYLS 127 Query: 176 KEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKT 229 + ++ + + + L SG R + L+ K Sbjct: 128 IDGIKLLLAQIPINTKKGRRDLALISLLYDSGARVQELIDLTPASLKLEKPCHVTLFGKG 187 Query: 230 GTIITVELPDGFMKLLAMTP---------IGKETFFINNDKQKMNATQFSIWFKAKATKA 280 V L D + LL + F N+ +K+ + S A Sbjct: 188 RKKRIVPLQDEQVNLLRSYMEENRLDLSGFNQRPLFFNSCGRKLTNSGISYILNNYINHA 247 Query: 281 GV--------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRL 331 + S H +R A AG + G ++ E Y + + + R Sbjct: 248 RIQDPELIPEKISPHTLRHSKAMHLLQAGVNLVYIRDILGHVSIQTTEIYARADSKQKRE 307 Query: 332 GIKNS 336 ++++ Sbjct: 308 ALESA 312 >gi|307295097|ref|ZP_07574939.1| integrase family protein [Sphingobium chlorophenolicum L-1] gi|306879571|gb|EFN10789.1| integrase family protein [Sphingobium chlorophenolicum L-1] Length = 298 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 36/278 (12%), Positives = 83/278 (29%), Gaps = 24/278 (8%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD--------YRKITTKHIRSG 122 L ++R+ +V++ ++ + ++++ + I +R+ Sbjct: 5 GDLCEQWRRHLALDRRRSVHTVRAYVATAERLVAFLEEHRGEAVTAAMLAGIEQADLRAF 64 Query: 123 VESRKHTP---SSAIQFLTSMRVLFKW---AVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + R+ SA + L+++R ++ + + P + P+ + Sbjct: 65 LTVRRMDGIGNVSAARELSAVRGFLRFVGGEDARVPMLKGPRVKRGLPRPVSPDEAVALA 124 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 D+ + G++ L +GLR ++ L T K G V Sbjct: 125 GDIAETAREEWIGARDWAVLLLLYGAGLRIGEAMGLTGAVLPLGETLRVTGKRGKTRIVP 184 Query: 237 LPDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287 L + F ++ + + G+ + H Sbjct: 185 LLPQVRSAIDAYVALCPFGAERDAPLFRGARGGPLSPALIRRAVQGARGRLGLSDRTTPH 244 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 +R AT GA L G ++ + YT Sbjct: 245 ALRHSFATHLLGRGADLRSLQELLGHASLSSTQIYTHV 282 >gi|310816481|ref|YP_003964445.1| integrase [Ketogulonicigenium vulgare Y25] gi|308755216|gb|ADO43145.1| integrase [Ketogulonicigenium vulgare Y25] Length = 333 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 53/333 (15%), Positives = 97/333 (29%), Gaps = 25/333 (7%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 R R G + + GRR T A ++ + T+ + Sbjct: 8 RLRGGYCVTWTDPDGGRRRYKLDATTPTEAEAEARSIFHQAAA--------ARALTVSDI 59 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS--- 131 S YRK + + + I+ G + +ITT+ R VE R+ Sbjct: 60 WSAYRKDKAGRRIDHHMIDT----GKTILPVFGALEPHQITTQDCRDYVEKRRAIGRKDG 115 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 + L +R WA + + +ERP + R ++ ++ + S Sbjct: 116 TIRTELGHLRTSLSWAEKHRMI--EHAPHIERPAMPSPKERYLSRAEIDRLLSVDG-DPH 172 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ----KTGTIITVELPDGFMKLLAM 247 RLA +L + R + I + V + ++ + Sbjct: 173 IRLAILLMLTTAGRVGAILELTWDRVDMIRGQINLRLEGEGPRKGRAVVPINNTLRAALV 232 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHE 306 + F+ KAG+ + H +R +A +AG E Sbjct: 233 AAKAHAMSEFVVEYAGGQIGSIKTGFRNACAKAGLKGVTPHVLRHTAAVHMVEAGVPILE 292 Query: 307 LMATYGWKTVDQA-ETYTK-GADRIRLGIKNSR 337 + G TY + D +R Sbjct: 293 VAQYLGHSNPSVTFSTYGRFSPDHLRKAADALE 325 >gi|289706258|ref|ZP_06502620.1| site-specific recombinase, phage integrase family [Micrococcus luteus SK58] gi|289556981|gb|EFD50310.1| site-specific recombinase, phage integrase family [Micrococcus luteus SK58] Length = 396 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 46/387 (11%), Positives = 94/387 (24%), Gaps = 63/387 (16%) Query: 11 VTKERTRHGKIIYYF-RKGHGRRIRLPYPHESTFIPAYMSALTG-------STPKREYIN 62 + + G+ Y GR LP + + + E Sbjct: 4 IQTRTNKAGRTTYRVGFYEDGRFQWLPALAHEAGAQRIKAIVEDPRQGPTVARRILEAQV 63 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFES-YFDQIIRKSGDFDYRKITTKHIRS 121 TL Y + + +E+ + + G+ I + + Sbjct: 64 DSAPGMPTLAEFFPRYIEHRGLR-CTPGTLAGYEAEAARTFLPRLGELPVDMIDRRTVAE 122 Query: 122 GVESR----------------------------KHTPSSAIQFLTSMRVLFKWAVRQEYV 153 + + +P + + + +AV++ + Sbjct: 123 WIRWQLQQPTARWRAAAARAAAATPPRPEPPLATVSPKTVRNAHALLSAVLGFAVQEGIL 182 Query: 154 AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213 NP + P E R S L L +G R ++ Sbjct: 183 PANPARGADLPDDDVEEERGIFSRAEWARFYAAMSESYQPLLIVL-LVTGARWGEATALQ 241 Query: 214 VQHLQNNIFSIKTQKTGT----------------IITVELPDGFMKLLAM----TPIGKE 253 V+ L I ++ T+ LPD ++ L + Sbjct: 242 VRDLDVAASVIHVRRAWKKGKEGAVLGVPKTARGRRTIMLPDWAVETLEPLAAGRAADEF 301 Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATY 311 +K AG+ + + H +R A+ + G A + Sbjct: 302 LLTAPGGGVIHRTNFVERHWKPALAAAGIAKHLTPHSLRHTFASWALMDGVPAQVVQHRL 361 Query: 312 GWKTVDQAET-YTK-GADRIRLGIKNS 336 G +++ Y D R + Sbjct: 362 GHESLQTTSRVYAHLLLDAQRAAVDAI 388 >gi|255655227|ref|ZP_05400636.1| putative tyrosine recombinase [Clostridium difficile QCD-23m63] gi|296451212|ref|ZP_06892953.1| tyrosine recombinase XerD [Clostridium difficile NAP08] gi|296880435|ref|ZP_06904398.1| tyrosine recombinase XerD [Clostridium difficile NAP07] gi|296260033|gb|EFH06887.1| tyrosine recombinase XerD [Clostridium difficile NAP08] gi|296428676|gb|EFH14560.1| tyrosine recombinase XerD [Clostridium difficile NAP07] Length = 304 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 40/278 (14%), Positives = 91/278 (32%), Gaps = 22/278 (7%) Query: 73 WLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESRKH- 128 +I Y L+ N+ S+ + + + I I S + + Sbjct: 2 DIIEGYIDYIKDKKKLSENTVASYFMDIKKYMEYINQKSIKLIDIVENDIISYLIKLEKD 61 Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + ++ + ++S++ + NP +++PK K E I T+E++++ +F Sbjct: 62 NVSIATIARMISSIKSFHDYLFLNHICTNNPAKDIKKPKIKKENINILTEEEIERLLNFP 121 Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVELPDGF 241 + + + FE L +G++ S+ ++ + +I I + L D Sbjct: 122 KLTTPKLIRDKAIFEVLYGTGIKVSELVEMNIEDIDLDIDYIYCNSCCKSQRVIPLCDIT 181 Query: 242 MKLLAMTPIGKETFFINNDK---------QKMNATQFSIWFKAKATKAGVNKS--AHGVR 290 L + Q+ K + A ++K+ +R Sbjct: 182 KLYLEKYLKEARPKMAVEGEKSLFVSSLGQRFTRQGLWKVIKKYSNLANIDKNINPTMLR 241 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 A + GA + G + + Y D+ Sbjct: 242 HSFAIHLLNEGANIAVVSKILGNVNLSSLQVYLNHIDK 279 >gi|291514262|emb|CBK63472.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301] Length = 407 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 46/343 (13%), Positives = 88/343 (25%), Gaps = 32/343 (9%) Query: 23 YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY-INSPRKKPTTLKWLISEYRKS 81 Y K R + + + + Y S Sbjct: 74 YLIDKPRTPAERQQNKETLELATKIRAEREQEFKESMLGYRLKKDRTVNFLDYFQAYINS 133 Query: 82 AHWGSLAVNSRISFES---YFDQIIRKSGD--------FDYRKITTKHIRSGVESRKHT- 129 ++ + + IT + + V + Sbjct: 134 Y--------TKKDIRMVQIALSRFKDFLKEQYPMNEFSIKPELITKEMMEQFVAYLQSRS 185 Query: 130 -PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187 A + + ++A+ + + +PC SV + + Q + Sbjct: 186 VGEGAKSIYQRFKKVIRYAIDHDVMLKDPCKSVTCKVDSQMLRKDVLSPEEIQKLAACHY 245 Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL- 244 E R AF F LY GLR D +++ +K +++ T + L Sbjct: 246 DNENPNVRRAFIFCLYCGLRFCDVKDLTYKNVDYGNRLLKFEQSKTKGHSASSGVVIPLN 305 Query: 245 --LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 L K +AG++K S H R A + Sbjct: 306 DGLLSIIGEAPADKNCLIFDLPTYESCCKSVKRWVKRAGIDKHISWHCARHSFAVNILNN 365 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343 GA + + G + E YT+ D +L + + + Sbjct: 366 GANIKTVASLLGHSGLKHTEKYTRAVD--KLKEEAINSLPELK 406 >gi|320201208|gb|EFW75790.1| Phage integrase [Escherichia coli EC4100B] Length = 356 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 59/345 (17%), Positives = 109/345 (31%), Gaps = 23/345 (6%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALT---GSTPKREY 60 LPP + R+ Y G+ L A + + G K Sbjct: 9 RRDLPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLT 65 Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 TL + Y K + + I++ S I R D ITTK I Sbjct: 66 ARINSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIA 125 Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + + +SA +++ F+ A+ + ++ NP + K + R E Sbjct: 126 AMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEY 185 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 ++ +++ S RLA E + +G R D C + + ++ KTG I + Sbjct: 186 LKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTV 245 Query: 239 DGFMKLLAMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKAGV-----NK 284 L + ++ +++ S +F +G+ Sbjct: 246 LHVDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPP 305 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + H +R SA + + G K+ A Y R Sbjct: 306 TFHELRSLSA-RLYEKQISDKFAQHLLGHKSDTMASQYRDDRGRE 349 >gi|315221512|ref|ZP_07863432.1| site-specific recombinase, phage integrase family [Streptococcus anginosus F0211] gi|315189346|gb|EFU23041.1| site-specific recombinase, phage integrase family [Streptococcus anginosus F0211] Length = 382 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 50/383 (13%), Positives = 121/383 (31%), Gaps = 51/383 (13%) Query: 10 FVTKERTRHGKIIYY------FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63 +T+ + ++G +Y + G++++ T A + ++ Sbjct: 2 RITEVKKKNGTTVYRASVYLGVDQVTGKKVKTSVTG-RTRKEVKSKAQQAQIDFKLNGST 60 Query: 64 PRKKPT--TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIR 120 +K + L + +S + + + S I G+ KIT I+ Sbjct: 61 IQKAVMVKNFQELADIWLESYKLT-VKPQTYEATLSNLRTHIYPVFGNRQLDKITASDIQ 119 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + + + + +R +F+ + + V NP + P+R+ + K Sbjct: 120 VFINQLSRYFENFVTIRSIIRRIFQQGILLQLVTNNPARDIILPRRQKKADDNKVKFIAP 179 Query: 181 QFKSFWSEGS-----------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229 + + + + LL +GLR + C + + +I KT Sbjct: 180 DDLKAFLDNLEKKQYKRYGLYYEYVLYHLLLSTGLRIGEVCALEWTDIDLDKSTITVNKT 239 Query: 230 GTI--------------ITVELPDGFMKLLAMTPIGKETFFINNDKQK-------MNATQ 268 T+ + + +L + + F + Sbjct: 240 YNKGLKAVSTAKTKSANRTISIDKKTVNMLRLYKNRQRQLFFETGARAPSVVFATPTREY 299 Query: 269 FSIWFKA-----KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ET 321 F + + + +AG+ + + H R A++ +AG + EL G + + Sbjct: 300 FDLAIRQSALDTRCKEAGIPRFTFHAFRHTHASLLLNAGISYKELQYRLGHANITMTLDI 359 Query: 322 YTK-GADRIRLGIKNSRRISSVV 343 Y+ D+ + + + S + Sbjct: 360 YSHLSRDKEKEAVAYFEKAISSL 382 >gi|295087104|emb|CBK68627.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A] Length = 470 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 31/264 (11%), Positives = 81/264 (30%), Gaps = 14/264 (5%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESRK 127 + ++ + + + + + + ++++ ITT IR E + Sbjct: 193 EQFLNSFISAKKIEGCSDKTLAYYRNTIERLLVTL-SMAICHITTSDIRTYLSDYQEEHQ 251 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + + F W ++Y+A +P + + K + + E ++Q Sbjct: 252 SSKVTIDNMRRIFSSFFAWLEDEDYIAKSPVRRIHKVKTDSLVKEVLSDEQLEQ-LRDSC 310 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLA 246 + +FL +G+R + + + + + V L Sbjct: 311 TNKRDLAIIDFLSSTGIRVGELVKLNREDIDFHERQCVVFGKGNKERVVYFNARTKLHLQ 370 Query: 247 MTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299 G+ ++ ++ + + + + K H R+ AT++ D Sbjct: 371 QYLNGRTDDNPALFVSLHSPHTRLTISGVEVRIRKLGHTLSMPKVHPHKFRRTLATMAID 430 Query: 300 AGATAHELMATYGWKTVDQAETYT 323 G ++ G +D Y Sbjct: 431 KGMPIEQVQRLLGHVRIDTTLHYA 454 >gi|294012386|ref|YP_003545846.1| integrase/recombinase XerD [Sphingobium japonicum UT26S] gi|292675716|dbj|BAI97234.1| integrase/recombinase XerD [Sphingobium japonicum UT26S] Length = 305 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 37/295 (12%), Positives = 83/295 (28%), Gaps = 28/295 (9%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 LI + + + N+ +++ + G + + Sbjct: 5 AALIDRFLEMMAAERGASRNTLLAYRADLTGAGEIVGGLS-SATRDRLAELTTAWAELAA 63 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ--------- 181 SS + +++R + + + A NP ++ RP + + + +++ Sbjct: 64 SSVARKSSALRAFYAFLEEEGLRADNPSSALPRPVTRRSLPKILSTQEVDSLFALIAGKL 123 Query: 182 -FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 + + E L SGLR ++ + L ++ + + G + Sbjct: 124 AVEHPAPLDLRLSALIELLYGSGLRATELVSLPRRALASDRPFLILKGKGARERLVPISD 183 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-------NKSAHGVRKFS 293 + + + I S H +R Sbjct: 184 RARAAVAAWLHHVPADSLWLFPSGKSHVSRIRLYQMVKALAAAAGIAPERVSPHVLRHAF 243 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 AT + GA L + G + + YT R R+ +V+S P Sbjct: 244 ATHLLEGGADLRALQSMLGHADIGTTQIYTHVDSR---------RLVELVNSRHP 289 >gi|16271777|ref|NP_438114.1| integrase-like protein [Temperate phage phiNIH1.1] gi|16156169|gb|AAL15043.1| integrase-like protein [temperate phage PhiNIH1.1] Length = 365 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 47/371 (12%), Positives = 102/371 (27%), Gaps = 45/371 (12%) Query: 11 VTKERTRHGKIIYYFR------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64 + K + G Y R G+++R T A + + + Sbjct: 2 IEKYTKKDGTTAYRLRAYLGVDPVTGKQVRTTRQGFKTEREAKRAEVKLIDDFQRQGAWK 61 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNS----RISFESYFDQIIRKSGDFDYRKITTKHIR 120 TT + + + ++ ++ + +++ G KIT + Sbjct: 62 SNDKTTFDDVAKLWFEQYQ-NTVKPSTFLVNQNYYKTILK---PHLGQLQMTKITVMICQ 117 Query: 121 SGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 V +++ + +L+ +FK+AV + NP R K + + TK+ Sbjct: 118 KFVNCLSRYSGYTL--YLSLANRIFKFAVNLGIIDNNPMNKTLRSKCTYKNVDTLTKKYY 175 Query: 180 QQFKSFWS-------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN------------- 219 + + E + RL + L Y G R + Sbjct: 176 TKEELNTFLRLVEAEETLEMRLIYRLLSYGGFRIGELIALKDTDFDFRNNTISITKTIAY 235 Query: 220 ----NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275 K + + + + Sbjct: 236 TKEGWAVQSPKTKKSNRTISMDAETMSLAKLYIKQSIKPLHGSFKLFNFASDTVRKRLDR 295 Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGI 333 K G+ + + HG R A++ +AG A G + YT + + Sbjct: 296 FILKHGLKRITPHGFRHTHASLLFEAGIPAKIAQERLGHAKIAITMDLYTHLS--KKSKD 353 Query: 334 KNSRRISSVVD 344 + +++ +V Sbjct: 354 NVADKLAELVA 364 >gi|317401433|gb|EFV82066.1| integrase/recombinase [Achromobacter xylosoxidans C54] Length = 324 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 39/298 (13%), Positives = 85/298 (28%), Gaps = 41/298 (13%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFD--QIIRKSGDFDYRKITTKHIRSGVESRK---H 128 ++ + + + ++ + + + ++ HIR V Sbjct: 14 MAAWLRHLESNRRYSPHTLDGYRRELGFLHALAERAKLPLERLGNGHIRQFVARLHAQGR 73 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--- 185 P S + L + R ++W +A NP V PK + + E Q Sbjct: 74 GPRSLARTLAAWRGFYQWWAPAIGLAGNPVAGVRAPKAPRSLPKALSVEQTQALLDRAPA 133 Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------ 229 + + FE L SGLR S+ +++ ++ + + Sbjct: 134 KVATEPAALRDQAMFELLYSSGLRLSELVGLDLRYARSADYESRGWLNLDEAEVIVLGKG 193 Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDK-------------QKMNATQFSIWFKAK 276 G +V + + L + ++++ + Sbjct: 194 GKRRSVPVGQAAVAALQRWIEARPQLAPPAASPSDAAALFLGARGRRISPRVVQLQLAHV 253 Query: 277 ATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 A AG+ H +R A+ + + G + + YT+ D L Sbjct: 254 AQAAGLPTHVHPHVLRHSFASHVLQSAQDLRAVQEMLGHANISTTQIYTR-LDFQHLA 310 >gi|228476251|ref|ZP_04060953.1| integrase [Staphylococcus hominis SK119] gi|228269654|gb|EEK11156.1| integrase [Staphylococcus hominis SK119] Length = 348 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 46/335 (13%), Positives = 101/335 (30%), Gaps = 19/335 (5%) Query: 11 VTKERTR-HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 VTK + + Y + + + T A +A + Sbjct: 6 VTKRKNKTSTSWQYDVKHPSFKSGKKRKSGFKTKAEATNAAQQLIRDLED--GKQVDSNR 63 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESRKH 128 K E+ K L+ + +E D ++ G D + IT + + + Sbjct: 64 LFKDYYKEWLKLNGKYELSSKQQYWYEHSLDLFLKHFGEDIKIKDITRSEYQKFISNYAQ 123 Query: 129 TPSS-----AIQFLTS-MR-VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 +S +L+S ++ ++ ++++ ++ K E ++ T ++ Sbjct: 124 GRTSETVRKVNLYLSSGIKDAVYDGYIKKDPTYNVKAKGTKQ--AKKEDVKFLTIRQYEE 181 Query: 182 FKSFWSEGSQPRLAFEFLLY-SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 + + + ++L +G R S+ R L I T T + Sbjct: 182 LREHFKLRTDKSTIMLYILLITGARFSEVNRMTYDDLLITKGLIHLPGTKTENADRFVEV 241 Query: 241 FMKLLAMTPIGKETFFINNDKQKMN--ATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296 L ET D + + S F K + + + + +R A+ Sbjct: 242 SKNDLKHIYKAIETHPHRIDNKLFSLSHAAISKVFNKAKKKYNINEDVTPYSLRHTHASY 301 Query: 297 SADAGATAHELMATYGWKTVD-QAETYTKGADRIR 330 G + G ++ + YT D + Sbjct: 302 LISKGIPIEYISKRLGHASIAITLDVYTHLLDEHK 336 >gi|320535370|ref|ZP_08035484.1| putative site-specific tyrosine recombinase XerD [Treponema phagedenis F0421] gi|320147772|gb|EFW39274.1| putative site-specific tyrosine recombinase XerD [Treponema phagedenis F0421] Length = 255 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 33/216 (15%), Positives = 70/216 (32%), Gaps = 21/216 (9%) Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + + + ++ +++ + + NP ++E P+R+ R + E++ Sbjct: 14 GKTTAKDIAALNSFYRFLILENVRQDNPAENIEAPRREKNLPRVLSPEEVDLLLDSIPLN 73 Query: 190 S----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKL 244 S + R FE + +GLR S+ ++ + + T K V + Sbjct: 74 SPNGIRDRALFELIYSAGLRVSEVVGLSLEDIFFDEQLLKVTGKGSKERIVPFGKQAKQQ 133 Query: 245 LAMTPIGKETFFINNDK----------------QKMNATQFSIWFKAKATKAGVNKSAHG 288 L G FI ++++ + +G+N H Sbjct: 134 LQNYIDGARKAFIKPQYTENTETRGAVFLNKNGKRLSRKGIWKRLQEIEVISGINTKVHT 193 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT GA + G + + YT Sbjct: 194 LRHSYATHLLAGGADLRSVQCLLGHADISTTQIYTH 229 >gi|291528623|emb|CBK94209.1| Site-specific recombinase XerD [Eubacterium rectale M104/1] Length = 282 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 34/273 (12%), Positives = 86/273 (31%), Gaps = 21/273 (7%) Query: 76 SEYR----KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--- 128 +Y ++ +L S +++Y + ++T + +R + ++K Sbjct: 3 EKYLLQLEEAGKIRNLKERSINCYKNYVSYFLNYMEKHP-EELTCQDVRDFLLAKKDDGL 61 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 ++ + +++R ++ + + + D ++ Sbjct: 62 KATTLNLYNSAIRFFYR-----NVLHVLWDDITVPRMIIEHKLPTILSTDEIDRLLDATD 116 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLA 246 + + F + SG+R S+ + N ++ K L + + LL Sbjct: 117 DLKYKAMFATMYSSGMRVSEVIHLHYDDISRTNMQIHVRDTKNRMDRYTILSERNLALLT 176 Query: 247 MTPIGKETFFINNDKQKMNATQFS-----IWFKAKATKAGV-NKSAHGVRKFSATISADA 300 K + + + A+ AG+ + H +R AT + Sbjct: 177 EYWFQKGRPKGILFPNQFTGQYLTVSTLEQVIRRSASAAGLSGVTPHCLRHSFATHLMEQ 236 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 G + A G + E Y +++ +GI Sbjct: 237 GVEQRNIQALLGHRDPKSTEVYLHVSNKSLMGI 269 >gi|315172125|gb|EFU16142.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX1342] Length = 383 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 51/356 (14%), Positives = 113/356 (31%), Gaps = 43/356 (12%) Query: 14 ERTRHGKIIYY--FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 ++ + G Y ++ GR ST A ++A + + + Sbjct: 12 KKLKSG-WQYRVSYKDKDGRYKTKSGNGFSTKKEAQLAASEIEARYSKGYSLKEGEKL-F 69 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 + + G L+ ++ D + D +++T + + + T + Sbjct: 70 HEYFRNWFEVYRKGKLSQDNDGDIRRAVDFSEKYFPDTKLKELTRQEYQKALNDYGETHA 129 Query: 132 SA--IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE- 188 +A + T MR K A+ + + +P V+ +K + Q+ E Sbjct: 130 TASVKKHHTYMRAALKDALEEGIIHRDPTYRVQAIGKKNPKHEELKYLNYQESIHLVHEI 189 Query: 189 ------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG------------ 230 R F + +G R S+ + ++K KT Sbjct: 190 LEGIKPTYTSRFIILFGIATGCRFSEIIGMTWDCIDFKNKTVKVNKTWDYKYTNTFSNTK 249 Query: 231 ---TIITVELPDGFMKLLAMTPIGKETFFI-------------NNDKQKMNATQFSIWFK 274 + + + D + LL + ++ +++ N++ + ++ T + + Sbjct: 250 NYQSKRIITIDDDTLDLLKKLQLHQKEYYLKSGLRNENNLVFLNDNMELVSNTAVNKVLR 309 Query: 275 AKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADR 328 K G + HG+R A+I G + G K + +TY D Sbjct: 310 KFCRKIGTKELTCHGLRHTHASIMLYKGINIKYVSRRLGHKDIVTTLQTYQHILDE 365 >gi|255527617|ref|ZP_05394479.1| integrase family protein [Clostridium carboxidivorans P7] gi|296187660|ref|ZP_06856054.1| site-specific recombinase, phage integrase family [Clostridium carboxidivorans P7] gi|255508689|gb|EET85067.1| integrase family protein [Clostridium carboxidivorans P7] gi|296047617|gb|EFG87057.1| site-specific recombinase, phage integrase family [Clostridium carboxidivorans P7] Length = 329 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 39/263 (14%), Positives = 85/263 (32%), Gaps = 14/263 (5%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESRKH 128 + + + + S ++S + ++R G + ITT+ +R + Sbjct: 53 DYCNIFICAKRVEGCSEKSIKYYKSTIENMLRTLG-KPVKHITTEDLRGYLAEYHKRSSC 111 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + S + F W + Y+ +P + + K +T E+++ + E Sbjct: 112 SKVSIDNIRRILSTFFSWLEDENYILKSPVRRIHKIKTGKIVKEVYTDENLEIMRDSCKE 171 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLAM 247 + + L +G+R + + + + N I K V L Sbjct: 172 -IRDLAIIDLLNSTGIRVGELVKLNIDDIDFNERECIVEGKGDKQRRVYFDARTKIHLQN 230 Query: 248 TPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300 + ++N + I ++ K +NK H R+ AT + D Sbjct: 231 YINSRVDNNRALFVSLIEPYNRLNISGVEIRMRSLGKKLNINKVHPHKFRRTLATRAIDK 290 Query: 301 GATAHELMATYGWKTVDQAETYT 323 G ++ G + +D Y Sbjct: 291 GMPIEQVQQLLGHQKIDTTLQYA 313 >gi|170020889|ref|YP_001725843.1| lambda integrase [Escherichia coli ATCC 8739] gi|169755817|gb|ACA78516.1| lambda integrase [Escherichia coli ATCC 8739] Length = 356 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 59/345 (17%), Positives = 109/345 (31%), Gaps = 23/345 (6%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALT---GSTPKREY 60 LPP + R+ Y G+ L A + + G K Sbjct: 9 RRDLPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLT 65 Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 TL + Y K + + I++ S I R D ITTK I Sbjct: 66 ARINSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIA 125 Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + + +SA +++ F+ A+ + ++ NP + K + R E Sbjct: 126 AMLNGYIDEGKAASAKLIRSTLSDAFREAMAEGHITTNPVAATRAAKSEVRRSRLTADEY 185 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 ++ +++ S RLA E + +G R D C + + ++ KTG I + Sbjct: 186 LKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTT 245 Query: 239 DGFMKLLAMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKAGV-----NK 284 L + ++ +++ S +F +G+ Sbjct: 246 LHVDALGISMKETLDKCKKILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPP 305 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + H +R SA + + G K+ A Y R Sbjct: 306 TFHELRSLSA-RLYEKQISDKFAQHLLGHKSDTMASQYRDDRGRE 349 >gi|153005549|ref|YP_001379874.1| tyrosine recombinase XerC [Anaeromyxobacter sp. Fw109-5] gi|152029122|gb|ABS26890.1| tyrosine recombinase XerC [Anaeromyxobacter sp. Fw109-5] Length = 311 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 42/281 (14%), Positives = 92/281 (32%), Gaps = 28/281 (9%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKH--TPSSA 133 Y ++ + ++ ++ + Q + +R+ + +S Sbjct: 18 YLRTE--RRASPHTVKAYLTDLSQYAAYLAGAGQGVVPSSPALVRAFLARAAGEAGATSL 75 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEG 189 + L+++R L+++ VR+ A NP SV PKR + +E++ + + Sbjct: 76 GRKLSAIRTLYRFLVREGLAAGNPARSVSGPKRPMRLPQVLPEEEVAALVEAPELAAPLE 135 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---------------IIT 234 + R E L SGLR S+ + + + ++ Sbjct: 136 QRDRAFLELLYASGLRVSELTGLDLASIDLSGRLVRVLGKRNKERIVPFGASAGEAVRRY 195 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKF 292 ++ + +E F+N +++ + G+ + H +R Sbjct: 196 LDEARPILAAGRDHATAEEALFLNYRGGRLSPRSVARRLDRWVLATGLPRHVHPHVLRHC 255 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 AT GA + G ++ + YT D RL Sbjct: 256 FATHLLGNGADLRGIQELLGHASLSTTQRYTH-VDWKRLAA 295 >gi|126698818|ref|YP_001087715.1| putative tyrosine recombinase [Clostridium difficile 630] gi|254974757|ref|ZP_05271229.1| putative tyrosine recombinase [Clostridium difficile QCD-66c26] gi|255092146|ref|ZP_05321624.1| putative tyrosine recombinase [Clostridium difficile CIP 107932] gi|255306126|ref|ZP_05350298.1| putative tyrosine recombinase [Clostridium difficile ATCC 43255] gi|255313883|ref|ZP_05355466.1| putative tyrosine recombinase [Clostridium difficile QCD-76w55] gi|255516564|ref|ZP_05384240.1| putative tyrosine recombinase [Clostridium difficile QCD-97b34] gi|255649664|ref|ZP_05396566.1| putative tyrosine recombinase [Clostridium difficile QCD-37x79] gi|260682828|ref|YP_003214113.1| putative tyrosine recombinase [Clostridium difficile CD196] gi|260686426|ref|YP_003217559.1| putative tyrosine recombinase [Clostridium difficile R20291] gi|115250255|emb|CAJ68076.1| putative phage integrase site-specific recombinase XerD-like [Clostridium difficile] gi|260208991|emb|CBA62057.1| putative tyrosine recombinase [Clostridium difficile CD196] gi|260212442|emb|CBE03323.1| putative tyrosine recombinase [Clostridium difficile R20291] Length = 304 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 40/278 (14%), Positives = 91/278 (32%), Gaps = 22/278 (7%) Query: 73 WLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESRKH- 128 +I Y L+ N+ S+ + + + I I S + + Sbjct: 2 DIIEGYIDYIKDKKKLSENTVASYFMDIKKYMEYINQKSIKLVDIVENDIISYLIKLEKD 61 Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + ++ + ++S++ + NP +++PK K E I T+E++++ +F Sbjct: 62 NVSIATIARMISSIKSFHDYLFLNHICTNNPAKDIKKPKIKKENINILTEEEIERLLNFP 121 Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDGF 241 + + + FE L +G++ S+ ++ + +I I + L D Sbjct: 122 KLTTPKLIRDKAIFEVLYGTGIKVSELVEMNIEDIDLDIDYIYCNSCCKNQRVIPLCDIT 181 Query: 242 MKLLAMTPIGKETFFINNDK---------QKMNATQFSIWFKAKATKAGVNKS--AHGVR 290 L + Q+ K + A ++K+ +R Sbjct: 182 KLYLEKYLKEARPKMAVEGEKSLFVSSLGQRFTRQGLWKVIKKYSNLANIDKNINPTMLR 241 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 A + GA + G + + Y D+ Sbjct: 242 HSFAIHLLNEGANIAVVSKILGNVNLSSLQVYLNHIDK 279 >gi|331084257|ref|ZP_08333362.1| hypothetical protein HMPREF0992_02286 [Lachnospiraceae bacterium 6_1_63FAA] gi|330401792|gb|EGG81369.1| hypothetical protein HMPREF0992_02286 [Lachnospiraceae bacterium 6_1_63FAA] Length = 363 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 52/362 (14%), Positives = 107/362 (29%), Gaps = 43/362 (11%) Query: 18 HGKIIY---YFRKGHGRRIR-LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 +G Y R+ + + + + + + + Sbjct: 9 NGTWYVMARYVNWKGERKQKCKRGFATKREAQEW--------ERMFKLQTSSDLDMSFEA 60 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR------ 126 Y L N+ ++ E +I+ G +I+TK I + Sbjct: 61 FTELYINDVKNR-LKENTWLTKEHIIRTKILPYFGKLKISEISTKEIITWQNEMLAYRDE 119 Query: 127 KHTPSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQF 182 K P S + +F AVR + NP V R+ WTKE+ ++F Sbjct: 120 KKKPYSQTYLKTLHNQLSAIFNHAVRYYELRSNPAAKVGNMGREEHKEMLFWTKEEYKKF 179 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------- 232 + AFE L + G+R + + ++ K+ Sbjct: 180 SFEMMDKPVSFYAFEMLYWCGIREGELLALTPADFNFDKETVTINKSYQRLKGQDVITSP 239 Query: 233 ------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-S 285 T+++P + + + + + A AGV + Sbjct: 240 KTKKSNRTIKMPKFLCEEMKEYLGMLYGLKKKDRIFTVTKSYLHHEMDRGAKAAGVKRIR 299 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345 H +R ++ D G +A + G +++D Y + I+ + ++ + Sbjct: 300 IHDLRHSHISLLIDMGFSAVAIADRVGHESIDITYQYAHLFPSKQ--IEMAEKLDDLGKG 357 Query: 346 DD 347 D Sbjct: 358 DF 359 >gi|218553295|ref|YP_002386208.1| Integrase from phage [Escherichia coli IAI1] gi|218360063|emb|CAQ97610.1| Integrase from phage [Escherichia coli IAI1] Length = 356 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 59/345 (17%), Positives = 109/345 (31%), Gaps = 23/345 (6%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALT---GSTPKREY 60 LPP + R+ Y G+ L A + + G K Sbjct: 9 RRDLPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLT 65 Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 TL + Y K + + I++ S I R D ITTK I Sbjct: 66 ARINSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIA 125 Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + + +SA +++ F+ A+ + ++ NP + K + R E Sbjct: 126 AMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEY 185 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 ++ +++ S RLA E + +G R D C + + ++ KTG I + Sbjct: 186 LKIYQAAESLPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTA 245 Query: 239 DGFMKLLAMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKAGV-----NK 284 L + ++ +++ S +F +G+ Sbjct: 246 LHVDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPP 305 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + H +R SA + + G K+ A Y R Sbjct: 306 TFHELRSLSA-RLYEKQISDKFAQHLLGHKSDTMASQYRDDRGRE 349 >gi|255656037|ref|ZP_05401446.1| integrase [Clostridium difficile QCD-23m63] Length = 370 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 46/365 (12%), Positives = 108/365 (29%), Gaps = 38/365 (10%) Query: 13 KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 ++R ++ + F + + L T+ Sbjct: 6 RKRNKNYVVYLEFEDKETGKRKQKNMGIFDKKREASKRLNEVKESLYKDGFLVPNEITVS 65 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT-- 129 + ++ ++++ + ++ S I G + + + HI++ ++ + Sbjct: 66 EFLLDFLNKYS-ENISLATYNNYVSICKNYINPSIGKYKIQDLHPIHIQNYIDKLSYKLN 124 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 P S + +++ K A R + + N +E P+ K + +E M + + Sbjct: 125 PQSIKIHINILKLAIKRAYRLKLIKENVMDGIEAPRYKKFKNEIYDREQMIKLLDLA-KN 183 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------------I 233 ++ L + GLR S+ ++ +I K + Sbjct: 184 TEMELPINLAIGLGLRISEVLGLTWDNIDFEENTITVNKITSRINGSVILKEPKTESSIR 243 Query: 234 TVELPDGFMKLLAMTPIGKETF-------------FINNDKQKMNATQFSIWFKAKATKA 280 + P M LL I + F N + + S FK K Sbjct: 244 KISSPKELMSLLKEYKIKQNKNLLKSSIRNNNNLLFFNKKCEPIAEDVISKKFKRFLEKN 303 Query: 281 GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRR 338 + H +R T+ ++ + G + Y+ + + S + Sbjct: 304 ELPHIRFHDLRHSHVTLLINSKVPIKVISERVGHSNISTTLSVYSHVL--KEMDKEASDK 361 Query: 339 ISSVV 343 IS + Sbjct: 362 ISESL 366 >gi|115376183|ref|ZP_01463426.1| transposase [Stigmatella aurantiaca DW4/3-1] gi|115366833|gb|EAU65825.1| transposase [Stigmatella aurantiaca DW4/3-1] Length = 385 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 48/360 (13%), Positives = 99/360 (27%), Gaps = 55/360 (15%) Query: 25 FRKGHGRRIRLPYPH---ESTFIPAYMSALTGSTPKREYINSPRKK-PTTLKWLISEYRK 80 F+ GR R+ Y L + Y + + TL + + Sbjct: 5 FQHADGREERVTKVSPVQTRRGAEQYERELRNALLNGTYGKEKKSEGRVTLAEFSARFLT 64 Query: 81 SAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPS-------- 131 + + +S I+ + I+ G+ +I I + S Sbjct: 65 YSENNN-KPSSAITKQQILRDHILPFFGEMALVRIGPAEIEDFKALMRKKKSASRARKED 123 Query: 132 --------------------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 + L+++ L A + + + K Sbjct: 124 ATRAAIGKRKDGEAKPLSLKTINNVLSALSKLLNLAEEXKVIKQ---APRVKLFGKLPKP 180 Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 + + + + + R L +GLR + L + + ++T Sbjct: 181 KFDFLTFEEAGRLIDAAEPEWRTLMLVALKTGLRQGELIGLQWADLDLSRGMVTVRRTIW 240 Query: 232 I-----------ITVELPDGFMKLLAMTPI-GKETFFINNDKQKMNATQFSIWFKAKATK 279 TV+LP ++ L F +D Q + A + + + Sbjct: 241 RGVTDLPKGGRERTVDLPASAVEALKAHRHLRGRFVFCQDDGQPLTAGKTAQPLRRALKM 300 Query: 280 AGVNK-----SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGI 333 A + + H +R A+ A G + G T++ E Y + D R + Sbjct: 301 ADIGREEGRIGWHDLRHTYASHLAMKGIPLKVIQELMGHVTIEMTERYAHLSPDTRREAV 360 >gi|147668708|ref|YP_001213526.1| phage integrase family protein [Dehalococcoides sp. BAV1] gi|146269656|gb|ABQ16648.1| phage integrase family protein [Dehalococcoides sp. BAV1] Length = 332 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 47/293 (16%), Positives = 97/293 (33%), Gaps = 31/293 (10%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESRKHT--PSS 132 Y A G L+ + ++ + ++ G +IT+ H+ ++ + T P S Sbjct: 34 YLLMAKVGQLSPATISNYRYMCGKFVDFCQEHGVTKPAQITSIHLGLFLQQLQLTNGPQS 93 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSE 188 + +R W + ++P V PK + I+P+T+E Q+ + E Sbjct: 94 VTDYFKQIRPFINWLKDNGQITVDPLKQVRLPKVPRKVIQPFTQEHCQRLLALVSGETFE 153 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLL-- 245 + + LL +GLR + + + K V + + L Sbjct: 154 DKRNKALILLLLDTGLRLRECTELKWSDINYDSELVKVMGKGAKERIVRIGPKVQRALLE 213 Query: 246 ---------------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAH 287 + +T + + + + +AG+ S H Sbjct: 214 YQYLKIQSFPGDKTPDVWVSRHKTRYSDKECHPLTKNGIMQTIVVLGKRAGITNIRCSPH 273 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 R AT+ GA E+ + G T+ Q Y + + ++ ++ S Sbjct: 274 TFRHTFATMCLRNGAGEFEVQSLMGHSTLTQTRKYAASLNSE-VAVQGHKKFS 325 >gi|296450534|ref|ZP_06892288.1| phage integrase family prophage LambdaCh01 [Clostridium difficile NAP08] gi|296879344|ref|ZP_06903339.1| phage integrase family prophage LambdaCh01 [Clostridium difficile NAP07] gi|296260609|gb|EFH07450.1| phage integrase family prophage LambdaCh01 [Clostridium difficile NAP08] gi|296429887|gb|EFH15739.1| phage integrase family prophage LambdaCh01 [Clostridium difficile NAP07] Length = 380 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 46/365 (12%), Positives = 108/365 (29%), Gaps = 38/365 (10%) Query: 13 KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 ++R ++ + F + + L T+ Sbjct: 16 RKRNKNYVVYLEFEDKETGKRKQKNMGIFDKKREASKRLNEVKESLYKDGFLVPNEITVS 75 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT-- 129 + ++ ++++ + ++ S I G + + + HI++ ++ + Sbjct: 76 EFLLDFLNKYS-ENISLATYNNYVSICKNYINPSIGKYKIQDLHPIHIQNYIDKLSYKLN 134 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 P S + +++ K A R + + N +E P+ K + +E M + + Sbjct: 135 PQSIKIHINILKLAIKRAYRLKLIKENVMDGIEAPRYKKFKNEIYDREQMIKLLDLA-KN 193 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------------I 233 ++ L + GLR S+ ++ +I K + Sbjct: 194 TEMELPINLAIGLGLRISEVLGLTWDNIDFEENTITVNKITSRINGSVILKEPKTESSIR 253 Query: 234 TVELPDGFMKLLAMTPIGKETF-------------FINNDKQKMNATQFSIWFKAKATKA 280 + P M LL I + F N + + S FK K Sbjct: 254 KISSPKELMSLLKEYKIKQNKNLLKSSIRNNNNLLFFNKKCEPIAEDVISKKFKRFLEKN 313 Query: 281 GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRR 338 + H +R T+ ++ + G + Y+ + + S + Sbjct: 314 ELPHIRFHDLRHSHVTLLINSKVPIKVISERVGHSNISTTLSVYSHVL--KEMDKEASDK 371 Query: 339 ISSVV 343 IS + Sbjct: 372 ISESL 376 >gi|238927807|ref|ZP_04659567.1| prophage LambdaCh01, site-specific recombinase phage integrase family protein [Selenomonas flueggei ATCC 43531] gi|238884354|gb|EEQ47992.1| prophage LambdaCh01, site-specific recombinase phage integrase family protein [Selenomonas flueggei ATCC 43531] Length = 377 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 44/364 (12%), Positives = 101/364 (27%), Gaps = 47/364 (12%) Query: 21 IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK 80 + Y +R +I L ++ + TL ++ + Sbjct: 6 VRYNYRDPATGQIVRKKKRGFLRRIDAEEFLLQINKAQQEGVFLTPEKLTLSTYLNTWLS 65 Query: 81 SAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTPS-------- 131 S ++ ++ +E+ ++I +G D + IT I + Sbjct: 66 SYAKVNVKASTYAQYEAIVKKRLIPWAGGCDIKAITPMQIDEFYATLLQQGRADGKGGLS 125 Query: 132 --SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK--SFWS 187 S + + AV++ + NP LSV + + + + + + Sbjct: 126 AKSVLYIHRVLNEALGHAVQKGLLVKNPLLSVTNIPKAKKFKASAYSAEEIRSLLEAAAA 185 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD-------- 239 E S + A GLR + + + SI + I ++ Sbjct: 186 ENSFWQAAIALAAICGLRRGECLGLKWSKIDFDSQSITIDEQVIEIHHKIHFSTPKSTES 245 Query: 240 ----------------------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277 + L + + + F+ FK Sbjct: 246 IRTIHAPAEVFAILKRRKEELDQHKEWLGNAYDEHDLVLCRGNGSPIRPGNFTKAFKDFL 305 Query: 278 TKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGIKN 335 + + H +R A++ +G G ++ A+ YT + + + Sbjct: 306 ARHNMRTIRFHDLRHSCASLMLQSGVAMKTASEILGHSSIAITADLYTHVMQKTK--EEA 363 Query: 336 SRRI 339 + +I Sbjct: 364 AGKI 367 >gi|253578208|ref|ZP_04855480.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850526|gb|EES78484.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 317 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 29/279 (10%), Positives = 77/279 (27%), Gaps = 30/279 (10%) Query: 78 YRKSAHWGS-LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS--SAI 134 Y + + L + ++ +Q + + I + + Sbjct: 22 YLEYCTYRKELDQKTVKAYRIDLNQYFTF---VACEEPDKEKIEEYITELHKKYKQKTVK 78 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG----- 189 + + S++ + + E + +P ++ ++ + + + G Sbjct: 79 RKIASVKAYYSYLEENELIKESPFRKIKVKFKENLILPRIIPREEIEHLLNHMYGCLQQA 138 Query: 190 --------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDG 240 + E +G R + +++ N K V++ Sbjct: 139 SETVYKYCLRDVAVIELFFATGARVYEISNIRAENVNLNTGLIQLMGKGAKERYVQIGST 198 Query: 241 FMKLLAMTPIGKE--------TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 + + + FF+N + + K +AG+ + + H R Sbjct: 199 SVLNILRKYYAENRAAIKKSGYFFVNGRGNRYTEQSIRLMLKKYTAQAGIERNITPHMFR 258 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + G + G ++ + Y A R Sbjct: 259 HSFATYLIEEGVDISCVQRILGHSSIKTTQIYIHVAARK 297 >gi|298346458|ref|YP_003719145.1| putative integrase/recombinase XerD [Mobiluncus curtisii ATCC 43063] gi|298236519|gb|ADI67651.1| possible integrase/recombinase XerD [Mobiluncus curtisii ATCC 43063] Length = 323 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 35/290 (12%), Positives = 81/290 (27%), Gaps = 41/290 (14%) Query: 85 GSLAVNSRISFESYFDQIIRKS-----GDFDYRKI------TTKHIRSGVESR---KHTP 130 L+ + ++ + +++ GD + IR+ + + + Sbjct: 26 RGLSPQTVRAYLTDLRELMTFLVDSDSGDGPAAQQLRADLANPARIRAWLGAMSRAGMSR 85 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----- 185 ++ + + S R WA + V + ++ + + D Sbjct: 86 ATLARRVASFRTFASWAQVRGIVPGDAGQNLRASRPDNALPTVLSATDAAHLLETARAAA 145 Query: 186 --------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236 + A E L +G+R S+ + ++ + +++ V Sbjct: 146 YPEASTAPNPVKLRDWAALELLYATGIRVSELTGLELGNINKSQRTVRVTGKGDKQRVVP 205 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNA------------TQFSIWFKAKATKAGVN- 283 L +N +K +N +A V Sbjct: 206 YGIPAGLALEEYLEKGRPALVNPEKPALNRVFLGAKGGMLDTRIVRGMLHRLTAQAEVPD 265 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 HG+R +AT D GA + G ++ + YT + + Sbjct: 266 LGPHGLRHTAATHLLDGGADLRSVQEILGHASLATTQRYTHLSMDKLRAV 315 >gi|225869605|ref|YP_002745552.1| integrase [Streptococcus equi subsp. equi 4047] gi|225699009|emb|CAW92097.1| integrase [Streptococcus equi subsp. equi 4047] Length = 355 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 39/355 (10%), Positives = 93/355 (26%), Gaps = 36/355 (10%) Query: 11 VTKERTRHGKIIYYFRK----GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 + K R R K Y G+ R A + K Sbjct: 1 MAKFRKRGDKWSYRIYYTDSQGNKREKSKGGFKTKALASAAAIKVEAELNKDID------ 54 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 +L ++ + + + ++ I + GD K+T + + Sbjct: 55 -DISLYDFCKDWAEIYKRPHVVDKTWETYTKNLKHIKKYFGDIKLNKVTHTLYQKKMNVF 113 Query: 127 KHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + + +F ++ K AVR + N +K + + + ++ + Sbjct: 114 ASKYAQETLEKFHYQIKGAVKVAVRDGLIKTNFAEGAIVKSQKEARAKEFDFLEEDEYLN 173 Query: 185 FWSEGSQPRLAFEFL-----LYSGLRCSDSCRAGVQHLQN---------------NIFSI 224 S+ + +GLR +++ + Sbjct: 174 LIKVTSEKYQYISYFTLYIIAVTGLRFAEATGITWSDIDFEKGFIDINKSFDYSKTQEFK 233 Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284 +T+ + + + +KLL N + G Sbjct: 234 ETKNEQSKRQIPIDQQTIKLLRAFKENYYKENKLNRVLYGASNSLCNRLVK--KIVGRPV 291 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGIKNSRR 338 H +R A+ G + G + ++ + Y D+++ + + Sbjct: 292 RNHSLRHTYASFLILKGVDLISISQLLGHENLNITLKVYAHQLDKLKEKNNQAIK 346 >gi|168750266|ref|ZP_02775288.1| phage integrase family [Escherichia coli O157:H7 str. EC4113] gi|168757063|ref|ZP_02782070.1| phage integrase family [Escherichia coli O157:H7 str. EC4401] gi|168767219|ref|ZP_02792226.1| phage integrase family [Escherichia coli O157:H7 str. EC4486] gi|168776481|ref|ZP_02801488.1| phage integrase family [Escherichia coli O157:H7 str. EC4196] gi|168779262|ref|ZP_02804269.1| phage integrase family [Escherichia coli O157:H7 str. EC4076] gi|168800794|ref|ZP_02825801.1| phage integrase family protein [Escherichia coli O157:H7 str. EC508] gi|193065593|ref|ZP_03046660.1| phage integrase family [Escherichia coli E22] gi|194429706|ref|ZP_03062223.1| phage integrase family protein [Escherichia coli B171] gi|195936762|ref|ZP_03082144.1| lambda integrase [Escherichia coli O157:H7 str. EC4024] gi|208807102|ref|ZP_03249439.1| phage integrase family protein [Escherichia coli O157:H7 str. EC4206] gi|208815031|ref|ZP_03256210.1| phage integrase family protein [Escherichia coli O157:H7 str. EC4045] gi|208822504|ref|ZP_03262823.1| phage integrase family protein [Escherichia coli O157:H7 str. EC4042] gi|209397327|ref|YP_002269402.1| phage integrase family protein [Escherichia coli O157:H7 str. EC4115] gi|254160836|ref|YP_003043944.1| integrase [Escherichia coli B str. REL606] gi|291281709|ref|YP_003498527.1| Phage integrase family [Escherichia coli O55:H7 str. CB9615] gi|307137380|ref|ZP_07496736.1| Phage integrase family protein [Escherichia coli H736] gi|331641269|ref|ZP_08342404.1| integrase [Escherichia coli H736] gi|331645918|ref|ZP_08347021.1| integrase [Escherichia coli M605] gi|187768129|gb|EDU31973.1| phage integrase family [Escherichia coli O157:H7 str. EC4196] gi|188015490|gb|EDU53612.1| phage integrase family [Escherichia coli O157:H7 str. EC4113] gi|189002936|gb|EDU71922.1| phage integrase family [Escherichia coli O157:H7 str. EC4076] gi|189355874|gb|EDU74293.1| phage integrase family [Escherichia coli O157:H7 str. EC4401] gi|189363411|gb|EDU81830.1| phage integrase family [Escherichia coli O157:H7 str. EC4486] gi|189376950|gb|EDU95366.1| phage integrase family protein [Escherichia coli O157:H7 str. EC508] gi|192926778|gb|EDV81405.1| phage integrase family [Escherichia coli E22] gi|194412265|gb|EDX28570.1| phage integrase family protein [Escherichia coli B171] gi|208726903|gb|EDZ76504.1| phage integrase family protein [Escherichia coli O157:H7 str. EC4206] gi|208731679|gb|EDZ80367.1| phage integrase family protein [Escherichia coli O157:H7 str. EC4045] gi|208737989|gb|EDZ85672.1| phage integrase family protein [Escherichia coli O157:H7 str. EC4042] gi|209158727|gb|ACI36160.1| phage integrase family protein [Escherichia coli O157:H7 str. EC4115] gi|253972737|gb|ACT38408.1| integrase [Escherichia coli B str. REL606] gi|290761582|gb|ADD55543.1| Phage integrase family [Escherichia coli O55:H7 str. CB9615] gi|309700991|emb|CBJ00289.1| integrase [Escherichia coli ETEC H10407] gi|315614643|gb|EFU95285.1| integrase [Escherichia coli 3431] gi|320643338|gb|EFX12524.1| Phage integrase family protein [Escherichia coli O157:H- str. 493-89] gi|320648681|gb|EFX17319.1| Phage integrase family protein [Escherichia coli O157:H- str. H 2687] gi|320664810|gb|EFX31948.1| Phage integrase family protein [Escherichia coli O157:H7 str. LSU-61] gi|323158819|gb|EFZ44832.1| integrase [Escherichia coli E128010] gi|323191112|gb|EFZ76377.1| integrase [Escherichia coli RN587/1] gi|326345702|gb|EGD69441.1| Phage integrase [Escherichia coli O157:H7 str. 1125] gi|327254456|gb|EGE66078.1| integrase [Escherichia coli STEC_7v] gi|331038067|gb|EGI10287.1| integrase [Escherichia coli H736] gi|331044670|gb|EGI16797.1| integrase [Escherichia coli M605] Length = 356 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 59/345 (17%), Positives = 109/345 (31%), Gaps = 23/345 (6%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALT---GSTPKREY 60 LPP + R+ Y G+ L A + + G K Sbjct: 9 RRDLPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLT 65 Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 TL + Y K + + I++ S I R D ITTK I Sbjct: 66 ARINSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIA 125 Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + + +SA +++ F+ A+ + ++ NP + K + R E Sbjct: 126 AMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEY 185 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 ++ +++ S RLA E + +G R D C + + ++ KTG I + Sbjct: 186 LKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTT 245 Query: 239 DGFMKLLAMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKAGV-----NK 284 L + ++ +++ S +F +G+ Sbjct: 246 LHVDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPP 305 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + H +R SA + + G K+ A Y R Sbjct: 306 TFHELRSLSA-RLYEKQISDKFAQHLLGHKSDTMASQYRDDRGRE 349 >gi|320654274|gb|EFX22329.1| Phage integrase family protein [Escherichia coli O55:H7 str. 3256-97 TW 07815] Length = 356 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 59/345 (17%), Positives = 109/345 (31%), Gaps = 23/345 (6%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALT---GSTPKREY 60 LPP + R+ Y G+ L A + + G K Sbjct: 9 RRDLPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLT 65 Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 TL + Y K + + I++ S I R D ITTK I Sbjct: 66 TRINSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIA 125 Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + + +SA +++ F+ A+ + ++ NP + K + R E Sbjct: 126 AMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEY 185 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 ++ +++ S RLA E + +G R D C + + ++ KTG I + Sbjct: 186 LKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTT 245 Query: 239 DGFMKLLAMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKAGV-----NK 284 L + ++ +++ S +F +G+ Sbjct: 246 LHVDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPP 305 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + H +R SA + + G K+ A Y R Sbjct: 306 TFHELRSLSA-RLYEKQISDKFAQHLLGHKSDTMASQYRDDRGRE 349 >gi|271964493|ref|YP_003338689.1| tyrosine recombinase XerD [Streptosporangium roseum DSM 43021] gi|270507668|gb|ACZ85946.1| tyrosine recombinase XerD [Streptosporangium roseum DSM 43021] Length = 308 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 46/304 (15%), Positives = 102/304 (33%), Gaps = 33/304 (10%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRK 127 + ++S Y LA N+ S+ + + G + +I + + + + + Sbjct: 5 EAVLSSYLAHLALERGLAANTLASYRRDLLRYVEHLKSRGRVTFGEIAEGDVTAFLAALR 64 Query: 128 HT--------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 SSA + ++++R L ++A+R+ +P V P++ + + D+ Sbjct: 65 AGDEEHQALVASSAARAVSAVRGLHRFALREGVSDHDPAHGVRPPRQLRRLPKAISVNDV 124 Query: 180 QQFKSFW-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--- 231 ++ + + R E L +G R S++ V + + + + G Sbjct: 125 ERLIAASGPEGAPLTMRNRALLELLYGTGARISEAVGLAVDDVDLGSDTQQVRLRGKGGR 184 Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQ-----------KMNATQFSIWFKAKATKA 280 V L + L + + ++ +A A + Sbjct: 185 TRLVPLGRFAREALGAYLARARPGIAAHGRGTSGLFLNARGGRLTRQGAWEVLQAAAERG 244 Query: 281 GV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT-KGADRIRLGIKNSRR 338 G+ S H +R AT D G + G +V + YT D++R + Sbjct: 245 GLAGISPHILRHSFATHLLDGGVDVRVVQELLGHASVTTTQVYTLVTVDKLREAYAAAHP 304 Query: 339 ISSV 342 + Sbjct: 305 RARH 308 >gi|238063996|ref|ZP_04608705.1| tyrosine recombinase xerD [Micromonospora sp. ATCC 39149] gi|237885807|gb|EEP74635.1| tyrosine recombinase xerD [Micromonospora sp. ATCC 39149] Length = 336 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 40/316 (12%), Positives = 75/316 (23%), Gaps = 43/316 (13%) Query: 51 LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--- 106 +T + + L+ + Y L+ N+ S+ ++ + Sbjct: 1 MTEQRRTGAPDGAGAQPAPALRRAVRGYLDHLTVERGLSANTLASYRRDLERYLATLTDA 60 Query: 107 GDFDYRKITTKHIRSGVESRKHT----------------PSSAIQFLTSMRVLFK--WAV 148 G D + + + + + + ++R Sbjct: 61 GIGDLASVAAGVVEAHLARLRAGDDGHPPLAVSSAARAASAVRGLHRFALREGLAGADPS 120 Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208 R P T + + R EFL +G R S+ Sbjct: 121 RDVRPPAPPRRLPRALAVDQVVRLLETAGPVTAAGDGAPLALRDRALLEFLYGTGARISE 180 Query: 209 SCRAGVQHLQN---------------NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253 + A + L + L G Sbjct: 181 AVGAAIDDLDGLDTGEATVLLRGKGGRSRLVPVGGYAAEALRAWLVRGRPALVAAGRGTP 240 Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVNK------SAHGVRKFSATISADAGATAHEL 307 F+N + + A +AG+ S H +R AT D GA + Sbjct: 241 AVFVNVRGGTLTRQGAWTILRRAAERAGLPVDGANAVSPHTLRHSFATHLLDGGADVRVV 300 Query: 308 MATYGWKTVDQAETYT 323 G +V + YT Sbjct: 301 QELLGHASVTTTQVYT 316 >gi|281601440|gb|ADA74424.1| putative phage integrase [Shigella flexneri 2002017] gi|313649784|gb|EFS14207.1| phage integrase family protein [Shigella flexneri 2a str. 2457T] gi|315618062|gb|EFU98654.1| phage integrase family protein [Escherichia coli 3431] gi|320193246|gb|EFW67884.1| Putative integrase [Escherichia coli WV_060327] gi|332091590|gb|EGI96671.1| phage integrase family protein [Shigella dysenteriae 155-74] Length = 341 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 56/335 (16%), Positives = 101/335 (30%), Gaps = 39/335 (11%) Query: 6 RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65 +LPP V + Y + R + + A K E + R Sbjct: 12 KLPPNVYPNK-------YSYVWKPTSRESVTLTAIKDGLAALWK-------KYEETVNNR 57 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 + T L ++ SA++ L+ ++ + + +++ G I +HIR ++ Sbjct: 58 DRAMTFGRLWEKFLASAYYSDLSPRTQKDYLQHQKKLLAVFGKVPADSIKPEHIRRYMDK 117 Query: 126 RK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 R + + A +SM ++ W + YV NPC V + K K KE Sbjct: 118 RGEQSKTQANHEKSSMSRVYSWGYERGYVKANPCAGVSKFKAKNRERYVTDKEYQAVLSV 177 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 +A E R SD + + N+ I+ KTG Sbjct: 178 AP---LPVFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAA 234 Query: 245 LAMTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAGV------NKSAHGVRKFSATI 296 + N + F+ + +AG + + H + Sbjct: 235 IEKAKQLPTSAYVISNQYGNRYMYKGFNEMWVEARNRAGKISGILTDFTFHDL------- 287 Query: 297 SADAGATA-----HELMATYGWKTVDQAETYTKGA 326 G + + G KT Q Y + Sbjct: 288 -KAKGISDYEGSSRDKQLFSGHKTEGQVLIYDRKV 321 >gi|213019194|ref|ZP_03335001.1| site-specific recombinase, phage integrase family [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212995303|gb|EEB55944.1| site-specific recombinase, phage integrase family [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 278 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 35/255 (13%), Positives = 70/255 (27%), Gaps = 28/255 (10%) Query: 97 SYFDQIIRKSGDF--------DYRKITTKHIRSGVESRKHTPSSAI---QFLTSMRVLFK 145 +I K++ +RS SR +A + L+ +R FK Sbjct: 2 RDLKDLISFLNTHIGEEVNVGSLEKLSIPELRSWFTSRYARGVNARSNTRALSVIRNFFK 61 Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--------SEGSQPRLAFE 197 + + S+ RP ++ + + +++ + Sbjct: 62 YIKNNYEINNEAVFSLSRPIQRRTLPKALSISNIETLLKEMKLPDLGEPWVVKREIAIVV 121 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI 257 L +GLR +++ V + N T K V + K + F Sbjct: 122 LLYGTGLRITEALNLKVSDISNESLI-VTGKGDKQRQVFILPVVKKCIQKYIKACPHFDE 180 Query: 258 NNDKQ------KMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMA 309 K+ T + + + S H R AT + Sbjct: 181 AGHLFVGVRGKKLGRTYVANRLQKIRRFLNLPEILSPHAFRHSFATHLLQEDIDIRSIQQ 240 Query: 310 TYGWKTVDQAETYTK 324 G +++ + YT Sbjct: 241 LLGHSSLETTQVYTH 255 >gi|205373364|ref|ZP_03226168.1| tyrosine recombinase xerC [Bacillus coahuilensis m4-4] Length = 250 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 31/233 (13%), Positives = 80/233 (34%), Gaps = 16/233 (6%) Query: 109 FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168 D + + + + +K+ S+ + ++S++ +K+ +++ + NP V PK++ Sbjct: 2 VDIEYLDARLYLTDLYDKKYARSTVSRKVSSLKSFYKFLTKEDKLDENPFSLVFHPKQEK 61 Query: 169 EGIRPWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 + +E++++ + + E L +G+R S+ ++ + + ++ Sbjct: 62 RLPNFFYEEEIERLFDACKGDTHKDIRNLALLELLYATGIRVSECSNLSLKDIDFSFHTV 121 Query: 225 -KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWFK 274 T K V + + + + Q + Sbjct: 122 LVTGKGRKERYVPFGTYASEAIKRYLDHTRHVLVKGEHQQLFVNLKGGPLTDRGIRHILN 181 Query: 275 AKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 ++A + H +R AT GA + G + +TYT Sbjct: 182 DVISRASLTHKIHPHMLRHTFATHLLSNGADLRSVQELLGHSHLSSTQTYTHV 234 >gi|117624154|ref|YP_853067.1| putative phage integrase [Escherichia coli APEC O1] gi|115513278|gb|ABJ01353.1| putative phage integrase [Escherichia coli APEC O1] Length = 341 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 56/335 (16%), Positives = 101/335 (30%), Gaps = 39/335 (11%) Query: 6 RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65 +LPP V + Y + R + + A K E + R Sbjct: 12 KLPPNVYPNK-------YSYVWKPTSRESVTLTAIKDGLAALWK-------KYEETVNNR 57 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 + T L ++ SA++ L+ ++ + + +++ G I +HIR ++ Sbjct: 58 DRAMTFGRLWEKFLASAYYSDLSPRTQKDYLQHQKKLLAVFGKVPADSIKPEHIRRYMDK 117 Query: 126 RK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 R + + A +SM ++ W + YV NPC V + K K KE Sbjct: 118 RGEQSKTQANHEKSSMSRVYSWGYERGYVKANPCAGVSKFKAKNRERYVTDKEYQAVLSV 177 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 +A E R SD + + N+ I+ KTG Sbjct: 178 AP---LPVFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAA 234 Query: 245 LAMTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAGV------NKSAHGVRKFSATI 296 + N + F+ + +AG + + H + Sbjct: 235 IEKAKQLPTSAYVISNQYGNRYMYKGFNEMWVDARNRAGKISGILTDFTFHDL------- 287 Query: 297 SADAGATA-----HELMATYGWKTVDQAETYTKGA 326 G + + G KT Q Y + Sbjct: 288 -KAKGISDYEGSSRDKQLFSGHKTEGQVLIYDRKV 321 >gi|255011911|ref|ZP_05284037.1| putative integrase [Bacteroides fragilis 3_1_12] gi|313149745|ref|ZP_07811938.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313138512|gb|EFR55872.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 327 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 42/264 (15%), Positives = 87/264 (32%), Gaps = 14/264 (5%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--- 128 LI + + + S + S IRK + + R ITT +R+ + + Sbjct: 50 SELIDSFLSAKRVEGCSDKSMHYYRSTLSNAIRKI-EKNIRHITTDDLRNYLNDYQQISG 108 Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 T + + F W ++Y+ +P + + K ++ E ++Q + Sbjct: 109 ATKVTVDNIRRILSSFFAWLEDEDYIVKSPVRRIHKVKVGKTVKETYSDEALEQMRDHC- 167 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLA 246 EG + + L +G+R + + + I T K V L Sbjct: 168 EGIRDLALIDLLASTGMRVGELVKLNRNDIDFENRECIVTGKGDKQRRVYFDARTKIHLQ 227 Query: 247 MTPIGKETFFINND------KQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299 G+ ++ + I + + + K H R+ AT++ D Sbjct: 228 RYLAGRIDDNSALFVSLLAPYDRLQISGVEIRLRRLGRELNIPKVHPHKFRRTLATMAID 287 Query: 300 AGATAHELMATYGWKTVDQAETYT 323 G ++ G +++D Y Sbjct: 288 KGMPIEQVQHLLGHQSLDTTLQYA 311 >gi|206976115|ref|ZP_03237024.1| prophage lambdaba03, site-specific recombinase, phage integrase family [Bacillus cereus H3081.97] gi|206745569|gb|EDZ56967.1| prophage lambdaba03, site-specific recombinase, phage integrase family [Bacillus cereus H3081.97] Length = 303 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 42/291 (14%), Positives = 89/291 (30%), Gaps = 26/291 (8%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITT-------KHIRSG 122 L+ +I EY + + Q+ R + ++ +++R+ Sbjct: 3 LEDVIEEYLYHCMAKGFTQKTMKNKRQEMKQLKRFLMNEKRISELEAINTLHLKQYVRTK 62 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE----D 178 E P S + +R F W ++EY+ N VE PK + ++ +T + Sbjct: 63 HEE-GLQPQSIVAMSKIVRAFFSWCQKEEYLKENIAKKVELPKVPKKLLKGFTVQEVSAM 121 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------NNIFSIKTQK 228 ++ F ++ + L GLR + Q+++ N + Sbjct: 122 IEAFSYKNYIEARNKAIVAMLSDCGLRAMEIRGLLTQNVKETKILVNGKGNKERIMFISP 181 Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KS 285 I + L + + +F++ ++ K + + S Sbjct: 182 PLKKILIRYERLKKDYLKDRIVKTDHYFLSYTADPLSHMGIYNVIKEAGERVKIEEARCS 241 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 H R F A G L G + + Y + + L + Sbjct: 242 PHTFRHFFAVQCILNGVDILTLSKLLGHGDLSTTQRYLQSLEDFELIKRAM 292 >gi|331007666|ref|ZP_08330803.1| phage like integrase [gamma proteobacterium IMCC1989] gi|330418532|gb|EGG93061.1| phage like integrase [gamma proteobacterium IMCC1989] Length = 398 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 54/352 (15%), Positives = 98/352 (27%), Gaps = 27/352 (7%) Query: 10 FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 F+ + +G++ R GR L + A+ E + K Sbjct: 49 FIERRV--NGRVK---RISIGRYGHLTPSQAKLKAQEMLGAIAMGQNPAEERKATEAKSI 103 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129 TL +Y + SL + ++ + + + I + Sbjct: 104 TLSAAFEDYLNTR--KSLKAGTIQNYRYSVNCHLSDWLNRRLSDINKNMVEERHREIGQK 161 Query: 130 -PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 P+ A + +R +F A+ + A + P + R W K D ++ E Sbjct: 162 APARANNTMRVLRAVFNHAIAKYEDAAGKSVLSFNPVDRLGRNRAWYKIDRRRTVIKAHE 221 Query: 189 ------------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 R F FLL++GLR ++ + + T Sbjct: 222 LPVFYQATEALSNEVSRDYFRFLLFTGLRKMEAATLTWSQVDFIAKTFTIPDTKNRDPHT 281 Query: 237 LPDGFMKL-LAMTPIGKETFFINNDKQKMNATQF---SIWFKAKATKAGVNKSAHGVRKF 292 LP L + N A G + H +R+ Sbjct: 282 LPLTNHLYDLLQFRKVHSHSQWVFPSPRDNEKHLKEPRGSVAMVAEALGSPFTLHDLRRT 341 Query: 293 SATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGIKNSRRISSVV 343 TI+ A+ L K Y +D R+ + +IS + Sbjct: 342 FITIAESLDIPAYALKQLLNHKNPTDVTAGYI-VSDVERI-REPMEKISGFI 391 >gi|301020468|ref|ZP_07184556.1| site-specific recombinase, phage integrase family [Escherichia coli MS 196-1] gi|299881824|gb|EFI90035.1| site-specific recombinase, phage integrase family [Escherichia coli MS 196-1] Length = 341 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 56/335 (16%), Positives = 101/335 (30%), Gaps = 39/335 (11%) Query: 6 RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65 +LPP V + Y + R + + A K E + R Sbjct: 12 KLPPNVYPNK-------YSYVWKPTSRESVTLTAIKDGLAALWK-------KYEETVNNR 57 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 + T L ++ SA + L+ ++ + + +++ G I +HIR ++ Sbjct: 58 DRAMTFGRLWEKFLASACYSDLSPRTQKDYLQHQKKLLAVFGKVPADSIKPEHIRRYMDK 117 Query: 126 RK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 R + + A +SM ++ W + YV NPC V + K K KE Sbjct: 118 RGEQSKTQANHEKSSMSRVYSWGYERGYVKANPCAGVSKFKAKNRERYVTDKEYQAVLSV 177 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 +A E R SD + + N+ I+ KTG Sbjct: 178 AP---LPVFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAA 234 Query: 245 LAMTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAGV------NKSAHGVRKFSATI 296 + + N + F+ + +AG + + H + Sbjct: 235 IEKAKQLPKSAYVISNQYGNRYMYKGFNEMWVEARNRAGKISGILTDFTFHDL------- 287 Query: 297 SADAGATA-----HELMATYGWKTVDQAETYTKGA 326 G + + G KT Q Y + Sbjct: 288 -KAKGISDYEGSSRDKQLFSGHKTEGQVLIYDRKV 321 >gi|194435415|ref|ZP_03067602.1| site-specific recombinase, phage integrase family [Shigella dysenteriae 1012] gi|194416345|gb|EDX32527.1| site-specific recombinase, phage integrase family [Shigella dysenteriae 1012] Length = 341 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 56/335 (16%), Positives = 101/335 (30%), Gaps = 39/335 (11%) Query: 6 RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65 +LPP V + Y + R + + A K E + R Sbjct: 12 KLPPNVYPNK-------YSYVWKPTSRESVTLTAIKDGLAALWK-------KYEETVNNR 57 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 + T L ++ SA++ L+ ++ + + +++ G I +HIR ++ Sbjct: 58 DRAMTFGRLWEKFLASAYYSDLSPRTQKDYLQHQKKLLAVFGKVPADSIKPEHIRRYMDK 117 Query: 126 RK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 R + + A +SM ++ W + YV NPC V + K K KE Sbjct: 118 RGEQSKTQANHEKSSMSRVYSWGYERGYVKANPCAGVSKFKAKNRERYVTDKEYQAVLSV 177 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 +A E R SD + + N+ I+ KTG Sbjct: 178 AP---LPVFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAA 234 Query: 245 LAMTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAGV------NKSAHGVRKFSATI 296 + N + F+ + +AG + + H + Sbjct: 235 IEKAKQLPTSAYVISNQYGNRYMYKGFNEMWVEARNRAGKISGILTDFTFHDL------- 287 Query: 297 SADAGATA-----HELMATYGWKTVDQAETYTKGA 326 G + + G KT Q Y + Sbjct: 288 -KAKGISDYEGSSRDKQLFSGHKTEGQVLIYDRKV 321 >gi|254383832|ref|ZP_04999180.1| phage integrase [Streptomyces sp. Mg1] gi|194342725|gb|EDX23691.1| phage integrase [Streptomyces sp. Mg1] Length = 426 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 46/399 (11%), Positives = 113/399 (28%), Gaps = 72/399 (18%) Query: 14 ERTRHGKI----IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 + + G+ +RIR+ + + S + Sbjct: 23 YQRKDGRWEAAGYVLAPGNTRKRIRVYGTTRKDAMTKLTEKIAASNRGLPVA----AADS 78 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128 T+ ++ + L N+ + + + G ++TT+ +R+ ++ + Sbjct: 79 TVSAYLAYWLDGVAVHHLRENTHTRYAASIRLHLNPGLGVKKLARLTTRDVRTFLDGLRT 138 Query: 129 ---------------------------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161 +P + ++ + AVR++ + N +V Sbjct: 139 TCQCCAQNRDSVRRSCCAIGQCCGKRLSPLTVTYVHAVLKSALEHAVREDELPRNVARNV 198 Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221 + + +P T + +Q + G + +E L +GLR + + L + Sbjct: 199 KTTTPRPRRFQPLTAAEARQLLHAAN-GDRLNALYELALRTGLRKGELLGLHWEDLDLDG 257 Query: 222 FSIKTQKTGTII-------------------------------TVELPDGFMKLLAMTPI 250 + ++ E + + Sbjct: 258 GTATIHRSLQRTRSQGLTVLNTKTLASDRRIALPTECLNSLKTHQERQQEERQTAGTSWT 317 Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMA 309 F + Q ++ T + F+ A + H +R +AT+ + G + Sbjct: 318 DNGLVFTTPNGQPLDPTNLTRRFRRLLHGAELRTIRFHDLRHSTATLLLEQGVDLVVIKE 377 Query: 310 TYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVVDSDD 347 G + Y R+RL + + S++ D Sbjct: 378 LLGHAHIGVTAGVYAHV--RLRLQHQAIDTLGSILSPTD 414 >gi|190151416|ref|YP_001974327.1| putative integrase [Streptococcus phage PH15] gi|190014410|emb|CAQ57796.1| hypothetical protein [Streptococcus phage PH15] Length = 355 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 42/338 (12%), Positives = 96/338 (28%), Gaps = 29/338 (8%) Query: 15 RTRHGKIIYY--FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 R R Y ++ G+ + T A +A E I + K +L Sbjct: 5 RKRDNGWEYRISYKDSDGKYKQKSKSGFQTKKLAQAAAREVEANLSENILT--DKDVSLY 62 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS- 131 + + + + ++ I GD + IT + + + + Sbjct: 63 DFVKTWSGVYKRPHVKDKTWETYTKNLKHIKIYFGDLKVKDITPLYYQKRLNEFGEKYAQ 122 Query: 132 -SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK--TEGIRPWTKEDMQQFKSFWSE 188 + +F ++ K AVR++ ++ N + + + +E + Sbjct: 123 ETLEKFHYQIKGALKVAVREQLISYNFAEDAKVKSQIETRSEDNDFLEESEYTALIASTR 182 Query: 189 GSQPRLAFEFLLY---SGLRCSDSCRAGVQHLQNNIFSIKTQKTG--------------- 230 + +++ L +G+R S++ + N I K Sbjct: 183 SNIQYVSYFTLYLLSVTGMRFSEALGLTWDDIDFNKGIIDINKGFDYSKTQDFGDLKNES 242 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVR 290 + + + ++ L I N + K G H +R Sbjct: 243 SKRKIPIDKITIETLKTYRKKYWQANIKNRVCFGVSNSACN--KLIKKLVGRPVRNHSLR 300 Query: 291 KFSATISADAGATAHELMATYGWKTVD-QAETYTKGAD 327 A+ G + G ++ D + Y+ + Sbjct: 301 HTYASYLILKGIDIVTISKLLGHESPDITLKVYSHQME 338 >gi|303326955|ref|ZP_07357397.1| tyrosine recombinase XerD [Desulfovibrio sp. 3_1_syn3] gi|302862943|gb|EFL85875.1| tyrosine recombinase XerD [Desulfovibrio sp. 3_1_syn3] Length = 331 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 42/280 (15%), Positives = 91/280 (32%), Gaps = 31/280 (11%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESRKH 128 I + + ++ ++ + Q+ + +++ KHI++ + Sbjct: 31 IEAFLSWLAVQKGASDATQKAYGADLTQLAVFLREQGADLARPGEVSRKHIQAFLAWLFR 90 Query: 129 TP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 SS + L ++R F++ +R V+ N V P+++ R ++ Sbjct: 91 RGEAKSSMARKLAAVRSFFRFLLRSGRVSENVAAQVRNPRQEKHHPRALNVDETFALLDT 150 Query: 186 WSEGS-----------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTII 233 + E L SGLR S++ + Q ++ Sbjct: 151 PKAAPPSEAHAARLLCRDLALAELLYGSGLRISEALSLDLDDAQLRSRVLRVMGKGSRER 210 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQ--------KMNATQFSIWFKAKATKAGV--N 283 L D + LA + + ++ ++N + + +AG+ Sbjct: 211 LSPLSDTSCEALAAWLAERSYLALPEEQALFVGARGARLNRREAARIIAGLCRRAGLAFT 270 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 S H +R AT AGA + G + + + YT Sbjct: 271 VSPHSLRHSFATHLLAAGADLRSVQELLGHRRLTTTQRYT 310 >gi|270291611|ref|ZP_06197831.1| integrase [Pediococcus acidilactici 7_4] gi|270279930|gb|EFA25768.1| integrase [Pediococcus acidilactici 7_4] Length = 359 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 33/334 (9%), Positives = 101/334 (30%), Gaps = 19/334 (5%) Query: 13 KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 ++R + + + RR + + + + T Sbjct: 5 EKRRKKYRAVVSVMDNGVRRKVSKTFPTKKEATEWATIMEA---DKFQNKKIIASSMTFA 61 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP-- 130 + ++ + ++ +++S + I + G+ ++T ++S ++ Sbjct: 62 DWFKMWMENYKKSEVRESTYAAYKSDHNVISKYFGNTTLAELTYPLLQSTLDKIGKKKKQ 121 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW----TKEDMQQFKSFW 186 S + +R K A ++Y+ + ++ + + E +Q + Sbjct: 122 GSVANLVIKIRASLKEAKYEQYIKSDIYSRLKPHGIRVDKKANVLSATEFEKLQNYLYQN 181 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ----KTGTIITVELPDGFM 242 + + A L +G+R + + + +I + IT + Sbjct: 182 YQNNLVNGAILVALETGMRIGEILALSSKDVSATFKTIVINKSLSHATSKITPPKNKHSI 241 Query: 243 KLLAMT----PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATIS 297 + + +T + + + + +++ + + HG+R A+ Sbjct: 242 RTIKITKELANVIESYGYHESRIFNVSSDTIRRNLDEIIELLNLTPITTHGLRHSHASYL 301 Query: 298 ADAGATAHELMATYGWKTVDQAET-YTKGADRIR 330 G + + + A G V + Y + Sbjct: 302 LYRGISINYVSARLGHANVSITQRVYAHMLKEEK 335 >gi|237710114|ref|ZP_04540595.1| transposase [Bacteroides sp. 9_1_42FAA] gi|229455576|gb|EEO61297.1| transposase [Bacteroides sp. 9_1_42FAA] Length = 320 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 41/281 (14%), Positives = 92/281 (32%), Gaps = 27/281 (9%) Query: 74 LISEYRKSAHW------GSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRS 121 L +R+ +A + +E+ D +I+ + I Sbjct: 24 LFEVFREHNDKCVQLSGTDMAPATVQRYETSLKHTRDFVWETYHKKDVLLDEISRQFIED 83 Query: 122 GVESRK----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 K ++A ++L + + + + A+ + ++ +P L + Sbjct: 84 YEFWLKTEKKCCHNTATKYLKNFKKIIRIALAKGWMKNDPFLEIRF-SLDKVEPDFLEDS 142 Query: 178 DMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234 ++Q+ S + + R F F ++GL SD +H+ + ++ + G T Sbjct: 143 EIQKLISKEIDIPRLSQVRDIFVFCCFTGLAFSDIHGLRKEHIVEDSNGVRWIRKGRQKT 202 Query: 235 VELPDGFM-----KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--H 287 + + + K+L + + + + + K A G+ K+ H Sbjct: 203 KIMCNIPLMEIPLKILEKYSTNEYCKKHGVLFPVLCNQKMNAYLKELADICGIKKTLTTH 262 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 R AT + G + + G V Y + DR Sbjct: 263 VGRHTFATFALANGVSIESVAKMLGHTNVQMTRHYARVLDR 303 >gi|194430644|ref|ZP_03063091.1| site-specific recombinase, phage integrase family [Escherichia coli B171] gi|194411310|gb|EDX27685.1| site-specific recombinase, phage integrase family [Escherichia coli B171] Length = 341 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 56/335 (16%), Positives = 101/335 (30%), Gaps = 39/335 (11%) Query: 6 RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65 +LPP V + Y + R + + A K E + R Sbjct: 12 KLPPNVYPNK-------YSYVWKPTSRESVTLTAIKDGLAALWK-------KYEETVNNR 57 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 + T L ++ SA++ L+ ++ + + +++ G I +HIR ++ Sbjct: 58 DRAMTFGRLWEKFLASAYYSDLSPRTQKDYLQHQKKLLAVFGKVPADSIKPEHIRRYMDK 117 Query: 126 RK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 R + + A +SM ++ W + YV NPC V + K K KE Sbjct: 118 RGEQSKTQANHEKSSMSRVYSWGYERGYVKGNPCAGVSKFKAKNRERYVTDKEYQAVLSV 177 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 +A E R SD + + N+ I+ KTG Sbjct: 178 AP---LPVFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAA 234 Query: 245 LAMTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAGV------NKSAHGVRKFSATI 296 + N + F+ + +AG + + H + Sbjct: 235 IEKAKQLPTSAYVISNQYGNRYMYKGFNEMWVEARNRAGKISGILTDFTFHDL------- 287 Query: 297 SADAGATA-----HELMATYGWKTVDQAETYTKGA 326 G + + G KT Q Y + Sbjct: 288 -KAKGISDYEGSSRDKQLFSGHKTEGQVLIYDRKV 321 >gi|90962164|ref|YP_536080.1| Phage integrase [Lactobacillus salivarius UCC118] gi|90821358|gb|ABD99997.1| Phage integrase [Lactobacillus salivarius UCC118] Length = 381 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 57/366 (15%), Positives = 99/366 (27%), Gaps = 49/366 (13%) Query: 11 VTKERTRHGKIIYYFR--------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62 + K + + +Y FR G R IR + + +Y Sbjct: 4 IIKYTNKDNETLYKFRFYAGLDEITGKQRYIRRQGFKSEKDAKTELLKIEYLVSTNQYFK 63 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122 S + ++ E+ A R + + D KIT +H + Sbjct: 64 SVKSGK--FGDVLDEWLALHKETVKASTWRYIERRVKNHVRPYFKDMYVDKITLRHCQDF 121 Query: 123 VES-RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 P Q ++ ++ +A+R + NP L V +PK++T + Sbjct: 122 TNKAFAAAPVGFTQIISIVKNTLDYALRLGMIESNPMLYVIKPKKQTTISDKHGNYYNKD 181 Query: 182 FKS-----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---- 232 + F L YSGLR + L +I KT Sbjct: 182 ELKKFLAAAKDTDLKKYTLFRLLAYSGLRVGECLALTWHDLDYKNNTIAINKTYAKTNNG 241 Query: 233 ------------------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMN--- 265 + + +LL + + K + Sbjct: 242 IKIQTPKTKASIRKVSLDVETIQVLKEWQLNQRKQLLKVGINAMNKQQLIFSNNKNSFIA 301 Query: 266 ATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYT 323 + A K G+ + HG R AT+ +G ++ A G V YT Sbjct: 302 NETVRLAIHQIAKKTGIHPITTHGFRHTHATLLFASGMDIKQVQARLGHSNVQTTLNIYT 361 Query: 324 KGADRI 329 Sbjct: 362 HAIQDK 367 >gi|59712648|ref|YP_205424.1| DNA integration/recombination/invertion protein [Vibrio fischeri ES114] gi|59480749|gb|AAW86536.1| DNA integration/recombination/invertion protein [Vibrio fischeri ES114] Length = 325 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 48/316 (15%), Positives = 93/316 (29%), Gaps = 19/316 (6%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 + +GK + + +RIR + T + ++ + TL Sbjct: 4 RKQPNGKYLVEIYLPNKKRIR--KTFATQSEAKRFEQFTQTESIQKPWMPAKDDNRTLNE 61 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS-- 131 LI + H +L+ + ++ + + R+IT + R T S Sbjct: 62 LIELWYG-LHGQALSDGPKR--KNKLLAMSLMMKNPIAREITASDFSKYRQLRIETVSIK 118 Query: 132 SAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQ--QFKSFWSE 188 +A T + LF R E+ NP + K K + T E++ + Sbjct: 119 TANNDQTYLNALFNELKRLGEWNYNNPLAELRALKYKQPEMGFLTSEEITLVFDELEKCR 178 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248 L + + +G R ++ L + + K TV + + L Sbjct: 179 NFDAYLISKICISTGCRWGEAESLTSTQLTPHRITFTHTKGNKHRTVPISKELYEELPKK 238 Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELM 308 + I F + + +S H +R A+ G L Sbjct: 239 NGRLFSNCI---------KSFKMAVNRTGVQLPKGQSTHVLRHTFASHFMMNGGNILVLQ 289 Query: 309 ATYGWKTVDQAETYTK 324 G ++ Y Sbjct: 290 QILGHASITDTMKYAH 305 >gi|296110926|ref|YP_003621307.1| integrase [Leuconostoc kimchii IMSNU 11154] gi|295832457|gb|ADG40338.1| integrase [Leuconostoc kimchii IMSNU 11154] Length = 375 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 51/361 (14%), Positives = 116/361 (32%), Gaps = 43/361 (11%) Query: 11 VTKERTRHGKII----Y--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64 + + ++HGK+ Y + G R + + + + + Sbjct: 3 IKQVDSKHGKVYEVVGYIGRHQDGTQARAKKRGFDSKRSAQQWFNNEVALFSNGQSKYNK 62 Query: 65 RKKP--TTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRS 121 + P T+K L + ++ ++ ++ + F+ II GD I ++ Sbjct: 63 KTTPNVMTVKELYDMWLETYQ-HTVEESTLNKTMNVFNVHIIPAWGDTRVTDIRPLDLQR 121 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + + + + +R L AVR + + ++P +E PK + + + D+ + Sbjct: 122 YINTMQGKILHYRKITGYLRRLLNIAVRMDMIPVDPFTKIEMPKERRQVNKRKQFMDVDE 181 Query: 182 FK--------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN------------- 220 FK + Q +G+R + + + N Sbjct: 182 FKAFVEVLDSQYKYINQQAYTLLRLGAMTGMRTEELLALQWEQVDFNGGYISIVQALGRG 241 Query: 221 ----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS-----I 271 + + + T+++ + + +L+ N+ Sbjct: 242 FNGGTYIKAPKSQTSKRTLKIDNKMLAVLSDWYEVSHYNSNNDFVFNNQGKTLQVMRPNK 301 Query: 272 WFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADR 328 W + K GV S H +R AT++ D GA+ ++ G V + Y+ R Sbjct: 302 WLHDVSNKYGVAVGLSMHKLRHTWATLALDQGASVKQVQTYLGHADVSMTLDVYSDITKR 361 Query: 329 I 329 Sbjct: 362 A 362 >gi|9626273|ref|NP_040609.1| integration protein [Enterobacteria phage lambda] gi|138569|sp|P03700|VINT_LAMBD RecName: Full=Integrase gi|215133|gb|AAA96562.1| integration protein [Enterobacteria phage lambda] gi|16209072|gb|AAL09849.1| integrase [CRIM helper plasmid pAH57] gi|16209183|gb|AAL09916.1| integrase [CRIM helper plasmid pINT-ts] gi|29415431|gb|AAO12751.1| integrase [CRIM plasmid pKD15] gi|29415712|gb|AAO12755.1| integrase [CRIM plasmid pKD16] gi|62825139|gb|AAY16131.1| lambda INT [Cloning vector lambda gt10] gi|63014370|gb|AAY25566.1| Int [Mus musculus] Length = 356 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 58/345 (16%), Positives = 108/345 (31%), Gaps = 23/345 (6%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALT---GSTPKREY 60 LPP + R+ Y G+ L A + + G K Sbjct: 9 RRDLPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLT 65 Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 TL + Y K + + I++ S I R D ITTK I Sbjct: 66 ARINSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIA 125 Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + + +SA +++ F+ A+ + ++ N + K + R E Sbjct: 126 AMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNHVAATRAAKSEVRRSRLTADEY 185 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 ++ +++ S RLA E + +G R D C + + ++ KTG I + Sbjct: 186 LKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTA 245 Query: 239 DGFMKLLAMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKAGV-----NK 284 L + ++ +++ S +F +G+ Sbjct: 246 LHIDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPP 305 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + H +R SA + + G K+ A Y R Sbjct: 306 TFHELRSLSA-RLYEKQISDKFAQHLLGHKSDTMASQYRDDRGRE 349 >gi|171317907|ref|ZP_02907083.1| integrase family protein [Burkholderia ambifaria MEX-5] gi|171096914|gb|EDT41786.1| integrase family protein [Burkholderia ambifaria MEX-5] Length = 283 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 42/288 (14%), Positives = 78/288 (27%), Gaps = 24/288 (8%) Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128 T + +I Y S SR ++ D D + +R + R+ Sbjct: 1 MTFEEVIDVYLASKTNR-----SRQRDLYALKRLRPYFSDRDLCVLKRADVRRYIAVRQA 55 Query: 129 TP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-- 183 S+ + L + + P + W Sbjct: 56 DGVQESTIQRELRVFSAAINFVRLEYDRPDLPNPVIRLAMSSGAARVRWISRQDADALVI 115 Query: 184 SFWSEGSQPRLAFEFLL--YSGLRCSDSCRAGVQHLQNNIF----SIKTQKTGTIITVEL 237 +P L L ++G R ++ + + + K G V L Sbjct: 116 CASRFARRPHLPNFIRLALHTGCRKNELLKLEWSRVDFDRAVLSLEPSDTKNGKRRVVPL 175 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQK-----MNATQFSIWFKAKATKAGVN-KSAHGVRK 291 D M L + T F+A +AG++ H +R Sbjct: 176 NDEAMAALRHQRDWVRVTVPRSPWVFAVASGDRMTTIQKGFRAACLRAGIDDFRVHDLRH 235 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 A+ AG + + + G ++ E Y A +G + R + Sbjct: 236 TFASWLVMAGVSLYVVKDLLGHSSITVTERYAHLAP--HMGREAVRTL 281 >gi|149918976|ref|ZP_01907461.1| Phage integrase [Plesiocystis pacifica SIR-1] gi|149820129|gb|EDM79548.1| Phage integrase [Plesiocystis pacifica SIR-1] Length = 398 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 37/364 (10%), Positives = 94/364 (25%), Gaps = 43/364 (11%) Query: 12 TKERTRHGK--IIYYFR----KGHGRRIRLPYPH---ESTFIPAYMSALTGSTPKREYIN 62 K R + G+ + GR++ + Y L ++ Sbjct: 6 RKWRDKQGRQHERWMVHIEHTWPDGRKLTIRKVSPVQTKRGAERYERELRKQLFTGQWEE 65 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRS 121 +++ TL+ + E+ + E ++ G KI + I Sbjct: 66 GDKQQTPTLQGFVEEFLAYQRTIN-KPAVIRRKEGILRLHLLPAFGRHRLDKIDERMIDQ 124 Query: 122 GVESR---------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 R P + Q L + +F A + + V P + + + ++ Sbjct: 125 YKVDRLATLTRTGSPFQPQTVNQHLKVLGRIFTVAKKWKLVREVPEIVLLKQRKSDFDFL 184 Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-------------QN 219 + + + + + +GLR + + + Sbjct: 185 DFDETEAFLTGTAEHL-PDWHTYMVVAVRTGLRVGEMIALRWREDIDLQRGRISVNQSWS 243 Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT--QFSIWFKAKA 277 + K+ + L L + + + + + Sbjct: 244 VENGFTSTKSDKRRELPLTWDARDALEAQRVRVQGKLVFPREGAPTHSAGTVQYAIDKIT 303 Query: 278 TKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD------RIR 330 + + H +R A+ + G ++ G +++ Y + R Sbjct: 304 EALEMRHLHNHVLRHTFASHAVMRGVPMRQVQEWLGHQSITTTMRYAHLSRGYGDELIKR 363 Query: 331 LGIK 334 L + Sbjct: 364 LAPE 367 >gi|226325764|ref|ZP_03801282.1| hypothetical protein COPCOM_03577 [Coprococcus comes ATCC 27758] gi|225205888|gb|EEG88242.1| hypothetical protein COPCOM_03577 [Coprococcus comes ATCC 27758] Length = 366 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 48/346 (13%), Positives = 96/346 (27%), Gaps = 42/346 (12%) Query: 11 VTKERTRHGKIIYYFR----KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 V K+ G +R KG ++ + A+ + K Sbjct: 3 VYKD-NATGTWRVIYRFTNWKGERKQTQKRGFATKREAQAW--------EHEAMLKQGAK 53 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVES 125 T Y + ++ S +I+ G+ +I K I + Sbjct: 54 LDMTFASFFEVYEADKK-QRVKESTWESKSHIIRTKILPYFGNRKIAEIEAKDIIAWQNE 112 Query: 126 RK---------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP-KRKTEGIRPWT 175 ++ + +F AV + NP + + WT Sbjct: 113 LMAYRDEKGKSYSADYLKTIHAQLTAIFNHAVNFYNLPYNPARRAGTMGNEVPKEMDFWT 172 Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--- 232 KE+ +F + + AFE L + G+R + ++ KT Sbjct: 173 KEEYLKFSEAMMDKPRSYYAFEMLYWCGIRSGELLALTPADFDFQKQTVTISKTFHRSKG 232 Query: 233 -------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279 T+++P + + N + + + + A + Sbjct: 233 SDIITSPKTKKSNRTIKMPPFLCEEMQEYIKMLYDIQPNERLFTVTKSYLNHEMERGAKQ 292 Query: 280 AGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 AGV K H +R + ++ D G + + G + Y Sbjct: 293 AGVKKIRVHDIRHSAVSLLIDMGFSVLAIGDRMGHEAEKITYRYAH 338 >gi|15639382|ref|NP_218831.1| integrase/recombinase (codV) [Treponema pallidum subsp. pallidum str. Nichols] gi|189025624|ref|YP_001933396.1| integrase/recombinase [Treponema pallidum subsp. pallidum SS14] gi|3322669|gb|AAC65375.1| integrase/recombinase (codV) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018199|gb|ACD70817.1| integrase/recombinase [Treponema pallidum subsp. pallidum SS14] gi|291059781|gb|ADD72516.1| tyrosine recombinase XerD [Treponema pallidum subsp. pallidum str. Chicago] Length = 306 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 37/276 (13%), Positives = 80/276 (28%), Gaps = 27/276 (9%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVESR---KHTPSS 132 Y SA +L + ++ + + + +E R + + Sbjct: 13 AYLISAEAHAL--LTARTYVTTLMLFQKNLDPPCNIESANAHDCVRFIEKRSAAGVSGKT 70 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE---- 188 + + ++ +++ + ++ NP V+ P+R R + E + F Sbjct: 71 IAKDMAALHAFYQFLILEQVRPDNPMQDVDAPRRAYSLPRVLSPEQVNTFLQSIPLCTPG 130 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAM 247 G + R FE + +GLR S++ + + T K + L Sbjct: 131 GVRDRALFELIYAAGLRVSEAVSLSLSDIFFAERLLKVTGKGNKERMAPFGEQACYFLMQ 190 Query: 248 TPIGKETFFINNDKQ----------------KMNATQFSIWFKAKATKAGVNKSAHGVRK 291 F + +++ + ++GV H R Sbjct: 191 YIREARVRFTSAKHPENSEKKGAVFLNRQGGRLSRKGIWKRLQDIEIRSGVETHVHTFRH 250 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 AT G H + G + + YT + Sbjct: 251 SYATHLLAGGVDLHSVQCLLGHADIATTQVYTHVEN 286 >gi|239905648|ref|YP_002952387.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1] gi|239795512|dbj|BAH74501.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1] Length = 374 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 47/289 (16%), Positives = 97/289 (33%), Gaps = 20/289 (6%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTK-----HIRSGVE 124 L L S+Y + E + I GD +T + I Sbjct: 88 LSDLGSKYLAHMQASGRTEKHIRNIEHLVNHVFIPVLGDKPVNDLTYQDDMVPFIIHFQG 147 Query: 125 SRKHTP-----SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 T + ++ + +F + + + ++NP ++PK + ++ T +D Sbjct: 148 VSSRTGKVRSQYTVNKYCDYLSFIFNFGIDNGFTSVNPLKIWKKPKVQPWDMK-LTLDDA 206 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVEL 237 ++ + + + F L + S+ + + +++ KT T TV + Sbjct: 207 KKIMANAEPHLKWAMEVCFNLGTRPGESELLSLRWEDVDFKAGTVRIYASKTKTYRTVPI 266 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSAT 295 F+K L +T ++ + T FK +AG+N + +R AT Sbjct: 267 NPEFLKRLEKEQAESQTGYVIEYMGRK-LTTIRKAFKNACKRAGINYPTRMYDLRHLFAT 325 Query: 296 ISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVV 343 GA + G TV TY + + + R + ++ Sbjct: 326 TLLRKGADLAAVSKMMGHSTVKMTADTYYHYMEGEK--ERAVRLLPELL 372 >gi|215485788|ref|YP_002328219.1| predicted integrase [Escherichia coli O127:H6 str. E2348/69] gi|260854001|ref|YP_003227892.1| putative integrase [Escherichia coli O26:H11 str. 11368] gi|215263860|emb|CAS08198.1| predicted integrase [Escherichia coli O127:H6 str. E2348/69] gi|257752650|dbj|BAI24152.1| putative integrase [Escherichia coli O26:H11 str. 11368] gi|323155048|gb|EFZ41237.1| integrase [Escherichia coli EPECa14] Length = 356 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 59/345 (17%), Positives = 109/345 (31%), Gaps = 23/345 (6%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALT---GSTPKREY 60 LPP + R+ Y G+ L A + + G K Sbjct: 9 RRDLPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLT 65 Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 TL + Y K + + I++ S I R D ITTK I Sbjct: 66 ARINSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIA 125 Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + + +SA +++ F+ A+ + ++ NP + K + R E Sbjct: 126 AMLSGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEY 185 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 ++ +++ S RLA E + +G R D C + + ++ KTG I + Sbjct: 186 LKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTT 245 Query: 239 DGFMKLLAMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKAGV-----NK 284 L + ++ +++ S +F +G+ Sbjct: 246 LHVDALGISMKETLDKCKEILGGETIIASTHREPLSSGTVSRYFMRARKASGLSFEGDPP 305 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + H +R SA + + G K+ A Y R Sbjct: 306 TFHELRSLSA-RLYEKQISDKFAQHLLGHKSDTMASQYRDDRGRE 349 >gi|150003403|ref|YP_001298147.1| tyrosine type site-specific recombinase [Bacteroides vulgatus ATCC 8482] gi|254881306|ref|ZP_05254016.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA] gi|294777807|ref|ZP_06743251.1| putative tyrosine recombinase XerC [Bacteroides vulgatus PC510] gi|319640308|ref|ZP_07995033.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A] gi|149931827|gb|ABR38525.1| tyrosine type site-specific recombinase [Bacteroides vulgatus ATCC 8482] gi|254834099|gb|EET14408.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA] gi|294448261|gb|EFG16817.1| putative tyrosine recombinase XerC [Bacteroides vulgatus PC510] gi|317388083|gb|EFV68937.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A] Length = 293 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 36/265 (13%), Positives = 93/265 (35%), Gaps = 24/265 (9%) Query: 76 SEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESR---K 127 + + + + + +S+ + D+ + +R V + Sbjct: 4 DSFLDYLRFEKNYSEKTIVSYGIDLTKFEEYFKGKDEKVDFTTVDADLVRGWVMNLMENG 63 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-----F 182 +T +S + L+S+R +++ +++ + +P L + PK K + +M + Sbjct: 64 YTSASVNRKLSSLRSFYRFLLKKGVIEEDPMLKIIGPKNKKPLPVFLKEREMDRLLDDVP 123 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGF 241 G + R+ E +G+R S+ + + F T K + + Sbjct: 124 FKEDFTGCRDRMVLEMFYATGMRLSELIGLNDVDVDFSAFLIKVTGKRNKQRLIPFGEEL 183 Query: 242 MKLLAMTPIGKET--------FFINNDKQKMNATQFSIWFKAKATK--AGVNKSAHGVRK 291 + +++ + FF+ + ++M + + K +K + +S H +R Sbjct: 184 RRAMSVYLKIRNEVLPGKAEAFFVLKNGKRMYPGKVYLLVKRNLSKVVSLKKRSPHVLRH 243 Query: 292 FSATISADAGATAHELMATYGWKTV 316 AT + A + G ++ Sbjct: 244 TFATAMLNNEAELGAVKELLGHSSL 268 >gi|325299560|ref|YP_004259477.1| integrase family protein [Bacteroides salanitronis DSM 18170] gi|324319113|gb|ADY37004.1| integrase family protein [Bacteroides salanitronis DSM 18170] Length = 407 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 45/343 (13%), Positives = 88/343 (25%), Gaps = 32/343 (9%) Query: 23 YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY-INSPRKKPTTLKWLISEYRKS 81 Y K R + + + + Y S Sbjct: 74 YLIDKPRTPVERQQNKETLELASKIRAEREQEFKESMLGYRLKKDRTVNFLDYYQAYINS 133 Query: 82 AHWGSLAVNSRISFES---YFDQIIRKSGDFDYRK--------ITTKHIRSGVESRKHT- 129 ++ ++ + IT + + V + Sbjct: 134 Y--------TKKDIRMVQIALNRFKDFLKEQYPANEFSIKPELITKEMMEQFVAYLQSRS 185 Query: 130 -PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187 A + + ++A+ + + +PC V + + Q Sbjct: 186 VGEGAKSIFQRFKKVVRYAIDHDVMLKDPCKGVTCKVDSQILRKDVLSPEEIQKLIACHY 245 Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL- 244 E R AF F LY GLR D +++ +K +++ T + L Sbjct: 246 DNENPTVRRAFIFCLYCGLRFCDVKDLTYKNVDYANRLLKFEQSKTKGHSASSGVVIPLN 305 Query: 245 --LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 L + K +AG++K S H R A + Sbjct: 306 DGLLSIIGEAPADKNCLIFDLPSYESCCKSVKRWVKRAGIDKHISWHCARHSFAVNILNN 365 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343 GA + + G + E YT+ D +L + + + Sbjct: 366 GANIKTVASLLGHSGLKHTEKYTRAVD--KLKEEAINSLPELK 406 >gi|294783281|ref|ZP_06748605.1| integrase/recombinase, phage integrase family [Fusobacterium sp. 1_1_41FAA] gi|294480159|gb|EFG27936.1| integrase/recombinase, phage integrase family [Fusobacterium sp. 1_1_41FAA] Length = 346 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 44/277 (15%), Positives = 97/277 (35%), Gaps = 24/277 (8%) Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----V 123 T L ++ + +L+ S + +++ + D+ K+TT IR Sbjct: 54 DRTNAELWKKFFLTKKAENLSDKSLLYYKNSLELFSLFI-KKDFLKVTTDDIRLYLAVER 112 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 E + S + F + +EY++ NP +++ K + +T+ ++++ + Sbjct: 113 EKNQQKAVSIDNIRRILNSFFSFLNEEEYISNNPVKKIKKVKGQKTEKTAFTQLELEKLR 172 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--------------- 228 E S + E L+ S +R ++ ++ + IK + Sbjct: 173 MAC-ENSLEKAMMEVLISSAVRATELANIKIRDIDFEKNEIKIIRKGNKEGVAFMSTIAA 231 Query: 229 --TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KS 285 I+ L + + + + K+ F K+ AT+A V Sbjct: 232 LAIKKYISERGNYNTPYLWIVDGLMYKCYKNQILGSKIETEGFRRVLKSIATRAKVENVH 291 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 H R+ AT++ G E+ G + ++ Y Sbjct: 292 PHRFRRTFATMALKKGMDVEEIQQVLGHQNINTTMIY 328 >gi|255100237|ref|ZP_05329214.1| putative tyrosine recombinase [Clostridium difficile QCD-63q42] Length = 304 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 41/278 (14%), Positives = 92/278 (33%), Gaps = 22/278 (7%) Query: 73 WLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESRKH- 128 +I Y L+ N+ S+ + + + I I S + + Sbjct: 2 DIIEGYIDYIKDKKKLSENTVASYFMDIKKYMEYINQKSIKLVDIVENDIISYLIKLEKD 61 Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + ++ + ++S++ + A NP +++PK K E I T+E++++ +F Sbjct: 62 NVSIATIARMISSIKSFHDYLFLNHICANNPAKDIKKPKIKKENINILTEEEIERLLNFP 121 Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDGF 241 + + + FE L +G++ S+ ++ + +I I + L D Sbjct: 122 KLTTPKLIRDKAIFEVLYGTGIKVSELVEMNIEDIDLDIDYIYCNSCCKNQRVIPLCDIT 181 Query: 242 MKLLAMTPIGKETFFINNDK---------QKMNATQFSIWFKAKATKAGVNKS--AHGVR 290 L + Q+ K + A ++K+ +R Sbjct: 182 KLYLEKYLKEARPKMAVEGEKSLFVSSLGQRFTRQGLWKVIKKYSNLANIDKNINPTMLR 241 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 A + GA + G + + Y D+ Sbjct: 242 HSFAIHLLNEGANIAVVSKILGNVNLSSLQVYLNHIDK 279 >gi|116629555|ref|YP_814727.1| integrase [Lactobacillus gasseri ATCC 33323] gi|238854086|ref|ZP_04644435.1| integrase [Lactobacillus gasseri 202-4] gi|116095137|gb|ABJ60289.1| Integrase [Lactobacillus gasseri ATCC 33323] gi|238833293|gb|EEQ25581.1| integrase [Lactobacillus gasseri 202-4] Length = 322 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 39/291 (13%), Positives = 92/291 (31%), Gaps = 14/291 (4%) Query: 45 PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR 104 A + L K PRK+ + K ++++ ++ + + ++ +Q++ Sbjct: 18 AAQLKRLQEVMLKHLVEREPRKRKISNKEYLAKFLEAKKMEGCSDRTIKYYKVTVEQLLA 77 Query: 105 KSGDFDYRKITTKHIRSGVESRK----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 K R+ITT+ +R + + ++ ++ F W ++Y+ +P Sbjct: 78 KV-IRPIRRITTEEMREYLVEYQKINNCGKTTIDNIRRNISSFFSWLEEEDYILKSPMRR 136 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220 + + + + T ED+++ + + L +G+R + R + + Sbjct: 137 IHKIRAEKLVKNVITDEDIEK-LRDGCSCLRDVAMIDLLYSTGIRVGELVRLNRNDINFS 195 Query: 221 IFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT------QFSIWF 273 V L +E I Sbjct: 196 ERECVVFGKGDKERRVYFDAKSKVHLINYLRSREDDNPALFVSLDKPNDRLKISGVEIRL 255 Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + K +++ H R+ AT + D G ++ G +D Y Sbjct: 256 RQLGRKLHLDRIHPHKFRRSMATRAIDKGMPIEQVQKILGHSQIDTTMQYA 306 >gi|325678355|ref|ZP_08157975.1| site-specific recombinase, phage integrase family [Ruminococcus albus 8] gi|324109856|gb|EGC04052.1| site-specific recombinase, phage integrase family [Ruminococcus albus 8] Length = 403 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 58/400 (14%), Positives = 119/400 (29%), Gaps = 64/400 (16%) Query: 10 FVTKERTRHGK-IIYYFRKGHGR----------RIRLPYPHESTFIPAYMSALTGSTPKR 58 ++ + + + G+ Y FR +G + +P + + + Sbjct: 3 YIERRKNKKGELTAYRFRVYNGYDVNGKQMVQFKTWVPPEGMTAKQAEKEAQRLAVLFEE 62 Query: 59 EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH 118 E + + L ++ + + +I G KIT + Sbjct: 63 ECAHGQVTATVKFQKLCEQWFGEYAELNHRSTTLQREHLLAGRIYPALGHLRIDKITARD 122 Query: 119 IRSGVESRKH-----------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-- 165 I+ + S + + L+ + +F++A+R + ++ NPC V PK Sbjct: 123 IQKFINSLAKPGANKRNGKPLSQKTMRHHLSFISSIFEYAIRLDMISTNPCSKVIIPKID 182 Query: 166 -----RKTEGIRPWTKEDMQQFKSFWSEGS-QPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219 K +TKE ++F + E + R+ F +Y+G R + +++ Sbjct: 183 ANGKVYKKPEKHIYTKEQAKEFMTILREAPIKYRVFFTLAIYTGCRRGEILGIEWKNIDF 242 Query: 220 NIFSIKTQKTGT-------------------------------IITVELPDGFMKLLAMT 248 +I T D + L Sbjct: 243 ENRTIMIDHTSNYTAKNGIYTDATKTDKSTRLVDLPPTVIKLLKAYKHDQDSYKANLGDK 302 Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHEL 307 + F D M+ W K + + H +R F A++ +AG + Sbjct: 303 WQEHDRLFTKWDGAPMHPATPYSWLKKECERRSFPFYGVHTLRHFFASVEIEAGVDPTTV 362 Query: 308 MATYGWKTVDQAE-TYTKG-ADRIRLGIKNSRRISSVVDS 345 A G T TY+ A+ + + D+ Sbjct: 363 AAMLGHSTPQTTLTTYSHYFAESKKRASNIVADVLEGKDA 402 >gi|219563220|ref|YP_002455812.1| integrase [Lactobacillus phage Lv-1] gi|215536987|gb|ACJ68924.1| integrase [Lactobacillus phage Lv-1] Length = 368 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 38/342 (11%), Positives = 95/342 (27%), Gaps = 33/342 (9%) Query: 15 RTRHGKIIYYFRK--------GHGRRIRLPYPHESTFIPAYMSALT-GSTPKREYINSPR 65 + +G + + +S F + + G R+ Sbjct: 6 KNENGNWAFRAFWFEHSIDPVTGKTVLTRKSKFQSGFNTKRQAQIALGEFESRQAQGESV 65 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 ++ K + + +++ +I + ++IT +S + Sbjct: 66 LANPPFFDYAEDFIKYNVENRVRPATLTAYKVALKRIESNFPNIPIKQITRSMFQSLLNQ 125 Query: 126 R--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR--PWTKEDMQQ 181 K++ S+ Q + K A+ V + V+ P++ + + + D++ Sbjct: 126 LSIKYSKSTVNQTAVVFSQIMKLALADGLVVRDVTSFVQIPEKAQDKRKIDYLSLADVKT 185 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--------- 232 S + + + + + +++ T Sbjct: 186 LVSHIKDNLNTTRVAPYFILTAIETGARLSELAALTWDDLTPTSITITKQRNRDGIVSKP 245 Query: 233 ------ITVELPDGFMKLLAMTPIGKET-FFINNDKQKMNATQFSIWFKAKATKAGVNKS 285 TV + LL + K+ F + + + + K + G+ + Sbjct: 246 KTESSVRTVSITKDLYNLLQDLKVNKKKLIFQQPNGIVPDPSSLNFALKRLMKECGIKRH 305 Query: 286 ---AHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYT 323 H +R + +AG + G K V E Y Sbjct: 306 GFHFHSLRHTHVALLLNAGVDILTISQRLGHKNVSTTTEIYA 347 >gi|118617636|ref|YP_905968.1| site-specific tyrosine recombinase XerC [Mycobacterium ulcerans Agy99] gi|118569746|gb|ABL04497.1| integrase/recombinase XerC [Mycobacterium ulcerans Agy99] Length = 302 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 37/289 (12%), Positives = 90/289 (31%), Gaps = 27/289 (9%) Query: 72 KWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKH 128 + ++ E+ + + ++R ++ ++ D R ++ +RS + + Sbjct: 6 EAILEEFDEYLALQCGRSAHTRRAYLGDLRSLLDYLAGRGADLRALSLPVLRSWLATAAG 65 Query: 129 TPSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 ++ + ++++ WAVR+ +A +P ++ PK ++ + Sbjct: 66 AGAARTTLARRTSAVKAFTAWAVRRGLLATDPAARLQVPKAHRTLPAVLRQDQALAAMTA 125 Query: 186 --------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE 236 + RL E L +G+R S+ + + ++ K T Sbjct: 126 AKSSAQQGDPLALRDRLIVELLYATGIRVSELRGLDIDDVDTGHRLVRVLGKGNKQRTAP 185 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKM---NATQFSIWFKAKATKAG---------VNK 284 + L + A + + T + Sbjct: 186 FGQPAAEALQAWLADGRPALATAESGPALLLGARGRRLDVRQARTVVHQTIAAVDGAPDM 245 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 HG+R +AT + GA + G ++ + YT A + Sbjct: 246 GPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSRLRAV 294 >gi|310658549|ref|YP_003936270.1| site-specific tyrosine recombinase xerc [Clostridium sticklandii DSM 519] gi|308825327|emb|CBH21365.1| putative site-specific tyrosine recombinase XerC [Clostridium sticklandii] Length = 308 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 37/278 (13%), Positives = 92/278 (33%), Gaps = 26/278 (9%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVE--- 124 E+ + + + S+ S F + + + IR+ + Sbjct: 13 EYFDEFLAYMTVERNASKFTISSYTSDFRILEEYLKERNMKVSIETLNVATIRTFIHFLR 72 Query: 125 -SRKHTPSSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQQ 181 +++T + + + ++ FK+ V EY+ NP + PK++ + ++++++ Sbjct: 73 LEKEYTNETIRRKIYALGSFFKFLVENEYIGMDKNPMSKIRAPKKEEKLPIYLSEKEIRT 132 Query: 182 FKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK---TGTII 233 + + + +GLR + + + +IK I Sbjct: 133 LLDTIMKTGGKDAIRDKAIISLFAMTGLRRMELINLNWEDVDFGQKTIKVTMGKGKKQRI 192 Query: 234 TVELPDGFMKLLAMTPIGKETF----FINNDKQKMNATQFSIWFKAKATKAGV---NKSA 286 + LLA FI ++ +++N + F+ +AG+ + Sbjct: 193 LPMPETLYQDLLAYMNNSLPITNTALFITSNNKRVNFRGMNNLFQKYIKRAGLSGKGYTL 252 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R A++ G + G + + Y Sbjct: 253 HKLRHSYASLLVQQGVDISIVKELMGHSDFNSTKIYVH 290 >gi|326201175|ref|ZP_08191047.1| integrase family protein [Clostridium papyrosolvens DSM 2782] gi|325988743|gb|EGD49567.1| integrase family protein [Clostridium papyrosolvens DSM 2782] Length = 291 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 33/290 (11%), Positives = 80/290 (27%), Gaps = 26/290 (8%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES-------- 125 I+EY + N+ SF S + + +K + + Sbjct: 3 WITEYENHLKTAQKSPNTISSFVSDVHEFVEWFAITYGKKFDCQVLEQDAREFRGFLLNI 62 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + P++ + + +++ ++ V + P + I+ + + + K Sbjct: 63 LRRKPATINRKMAALKSFNQFLVEKGLSKDIPIAGLLLADPSDREIKTLERTEQNKLKRA 122 Query: 186 WSE--GSQPRLAFEFLLYSGLRCSD---------SCRAGVQHLQNNIFSIKTQKTGTIIT 234 + +E L G+R S+ ++ + I+ K Sbjct: 123 IYAKGNKRDIAIYELLYNIGVRVSELVSLSLEDVHLTERNGNINYSYVIIRQGKGSKYRE 182 Query: 235 VELPDGFMKLLAMTPIGKE---TFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVR 290 L L + + + K AG+++ S+H +R Sbjct: 183 CPLNAQARSALDEYLKIRVSSSDNIFIGQRGPLGREAVDKILKKYCADAGIDRISSHVIR 242 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAET-YTKGADRIRLGIKNSRRI 339 T G + G +V+ Y ++ ++ Sbjct: 243 HTFCTRLIQEGVPLPTVSRLAGHSSVETTTRFYVHTPRADKIA--AVEKL 290 >gi|168238569|ref|ZP_02663627.1| site-specific recombinase, phage integrase family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|219681195|ref|YP_002455840.1| Int [Salmonella enterica bacteriophage SE1] gi|318065905|ref|YP_004123763.1| Int [Salmonella phage ST160] gi|66473810|gb|AAY46456.1| Int [Salmonella phage SE1] gi|197288610|gb|EDY27987.1| site-specific recombinase, phage integrase family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|289066891|gb|ADC81102.1| Int [Salmonella phage ST160] gi|321224985|gb|EFX50046.1| Phage integrase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] Length = 387 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 49/375 (13%), Positives = 105/375 (28%), Gaps = 60/375 (16%) Query: 17 RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76 R F +G+R + A T + Sbjct: 6 RGETWYASFTLPNGKRFKQSL-GTKDKRQATELHDKLKAEAWRVNKLGETPDMTFEEACV 64 Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP------ 130 + + S +S ++ + IT I S ++ + Sbjct: 65 RWLEEKAHKK----SLDDDKSRIGFWLQHFAGMQLKDITETKIYSAIQKMTNRRHEENWK 120 Query: 131 -----------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167 ++ L+ ++ L + A +E+ ++ ++ P+ K Sbjct: 121 LMDEACRKNGKQPPVFKPKPAAVATKATHLSFIKALLR-AAEREWKMLDKAPIIKVPQPK 179 Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFS 223 + IR + ++ E + EF L +GLR S+ Q + Sbjct: 180 NKRIRWLEPHEAKRLIDECPE--PLKSVVEFALSTGLRRSNIINMEWQQIDMQRKVAWIH 237 Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------------FSI 271 + K+ I V L D ++L + + + Sbjct: 238 PEQSKSNQAIGVALNDTACRVLKKQIGNHHKWVFVYKESSTKPDGTKSPVVRKMRYDANT 297 Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 +++ +AG+ + H +R A+ AG L GW++++ Y Sbjct: 298 AWRSALKRAGIEDFRFHDLRHTWASWLVQAGVPISVLQEMGGWESIEMVRRYAH------ 351 Query: 331 LGIKNSRRISSVVDS 345 L + + +DS Sbjct: 352 LAPNHLTEHARQIDS 366 >gi|170682438|ref|YP_001743215.1| phage integrase family site specific recombinase [Escherichia coli SMS-3-5] gi|331652781|ref|ZP_08353787.1| putative integrase for prophage [Escherichia coli M718] gi|331683632|ref|ZP_08384228.1| putative integrase for prophage [Escherichia coli H299] gi|170520156|gb|ACB18334.1| site-specific recombinase, phage integrase family [Escherichia coli SMS-3-5] gi|284921955|emb|CBG35031.1| phage integrase [Escherichia coli 042] gi|331049537|gb|EGI21608.1| putative integrase for prophage [Escherichia coli M718] gi|331078584|gb|EGI49786.1| putative integrase for prophage [Escherichia coli H299] Length = 341 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 56/335 (16%), Positives = 102/335 (30%), Gaps = 39/335 (11%) Query: 6 RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65 +LPP V + Y + R + + A K E + R Sbjct: 12 KLPPNVYPNK-------YSYVWKPTSRESVTLTAIKDGLAALWK-------KYEETVNNR 57 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 + T L ++ SA++ L+ ++ + + +++ G I +HIR ++ Sbjct: 58 DRAMTFGRLWEKFLASAYYSDLSPRTQKDYLQHQKKLLAVFGKVPADSIKPEHIRRYMDK 117 Query: 126 RK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 R + + A +SM ++ W + YV NPC V + K K KE Sbjct: 118 RGEQSKTQANHEKSSMSRVYSWGYERGYVKANPCAGVSKFKAKNRERYVTDKEYQAVLSV 177 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 +A E R SD + + N+ I+ KTG Sbjct: 178 AP---LPVFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAA 234 Query: 245 LAMTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAGV------NKSAHGVRKFSATI 296 + + N + F+ + +AG + + H + Sbjct: 235 IEKAKQLPKSAYVISNQYGNRYMYKGFNEMWVDARNRAGKISGILTDFTFHDL------- 287 Query: 297 SADAGATA-----HELMATYGWKTVDQAETYTKGA 326 G + + G KT Q Y + Sbjct: 288 -KAKGISDYEGSSRDKQLFSGHKTEGQVLIYDRKV 321 >gi|160934351|ref|ZP_02081738.1| hypothetical protein CLOLEP_03222 [Clostridium leptum DSM 753] gi|156867024|gb|EDO60396.1| hypothetical protein CLOLEP_03222 [Clostridium leptum DSM 753] Length = 357 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 49/359 (13%), Positives = 110/359 (30%), Gaps = 41/359 (11%) Query: 12 TKERTRHGKIIYYF--RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 +E+T +++Y + G ++ + A+ + + Sbjct: 5 KEEKTNTWRVLYRYTDWNGERKQSQKRGFKTKREAQAW--------EREQLNKLGGDLDM 56 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR-- 126 + K + Y + + N+ + E +++ G IT + I + Sbjct: 57 SFKSFVQHYSEDMQAR-IKENTWATKEHIIQTKLMPYFGKLKMCNITAQQIITWQNKLIN 115 Query: 127 -------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKED 178 ++P + +F AVR + NPC +K WTKE+ Sbjct: 116 YKGDNGKPYSPVYLKTIHNQLSAIFNHAVRYYNLKENPCQKAGSMGKKKNREMLFWTKEE 175 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------ 232 +F + AFE L ++G+R + ++ K+ Sbjct: 176 YLKFADAMMDKPMSYYAFEMLYWTGIREGELLAITPADFDFEKRTVTINKSFQHLNGRDI 235 Query: 233 ----------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 T++LP + + + + + A +AGV Sbjct: 236 ITSPKTEKSNRTIQLPKFLCDEMQDYLKMLYDVGLEDRMFPVTKSYLHREMNRGAKEAGV 295 Query: 283 NK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 + H +R ++ D G +A + G +++D Y + + + ++ Sbjct: 296 KRIRIHDIRHSHVSLLIDMGFSATAIADRVGHESIDITYNYAHLFPSKQ--AEMADKLD 352 >gi|154505301|ref|ZP_02042039.1| hypothetical protein RUMGNA_02815 [Ruminococcus gnavus ATCC 29149] gi|153794344|gb|EDN76764.1| hypothetical protein RUMGNA_02815 [Ruminococcus gnavus ATCC 29149] Length = 405 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 40/392 (10%), Positives = 96/392 (24%), Gaps = 74/392 (18%) Query: 12 TKERTRHGKIIYYFRKG--HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 + R K Y F G+R R+ T A + ++ Sbjct: 4 VRAIKRGKKWQYIFEIAKVGGKRQRISKSGFDTKGAALEAGTKAKADYDNAGIVVKENDI 63 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128 +L + + + +L + + I G + +T ++ + + + Sbjct: 64 SLHDYLEIWLEQYCDVNLNPQTVHGYRKKIRLYIDPVLGKYRITSLTPIILQDFINDKFN 123 Query: 129 TPSSAIQFLTSMRVLFKWAVRQ-------------EYVAINPCLSVERPKRKTEGIRPWT 175 S L+S++ + +++ + V + + + + + P T Sbjct: 124 EGFSRN-TLSSIKGILNKSLKHAVSKYQFLKSNPMKEVELPMATAKAKVPTRKKVRVPVT 182 Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 KE ++ + EG+ + GLR + + + + Sbjct: 183 KEQFEKIIDRFPEGTSQHIPLILGYKCGLRLGEVFALDIMKDFDEESKVIFINHQVQHND 242 Query: 236 ELPDGF--------------------------MKLLAMTPIGKETF-------------- 255 + ++L + + Sbjct: 243 TKNFWYLSNPKYDSKRTIDLDDETFNLLLRKKKQMLKDMDYYGDMYTRLYLTKDLEITDE 302 Query: 256 -------FINNDKQKMNATQFSIWFKAKATKAG---------VNKSAHGVRKFSATISAD 299 G + H +R A+I Sbjct: 303 YDELNPDNYIEFNPLNRYQDGRYIQPRIMQHCGRIVHYQLDLPDWDFHSLRHTHASILLA 362 Query: 300 AGATAHELMATYGWKTVDQA-ETYTKGADRIR 330 AGA + G K ++ Y+ + +R Sbjct: 363 AGADIKYVQDRLGHKNIETTLNVYSHVMEEMR 394 >gi|46358652|ref|YP_006360.1| Int [Enterobacteria phage ST104] gi|46357888|dbj|BAD15167.1| Int [Enterobacteria phage ST104] gi|312911293|dbj|BAJ35267.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] Length = 387 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 49/375 (13%), Positives = 105/375 (28%), Gaps = 60/375 (16%) Query: 17 RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76 R F +G+R + A T + Sbjct: 6 RGETWYASFTLPNGKRFKQSL-GTKDKRQATELHDKLKAEAWRVNKLGETPDMTFEEACV 64 Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP------ 130 + + S +S ++ + IT I S ++ + Sbjct: 65 RWLEEKAHKK----SLDDDKSRIGFWLQHFAGMQLKDITETKIYSAIQKMTNRRHEENWK 120 Query: 131 -----------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167 ++ L+ ++ L + A +E+ ++ ++ P+ K Sbjct: 121 LMDEACRKNGKQPPVFKPKPAAVATKATHLSFIKALLR-AAEREWKMLDKAPIIKVPQPK 179 Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFS 223 + IR + ++ E + EF L +GLR S+ Q + Sbjct: 180 NKRIRWLEPHEAKRLIDECPE--PLKSVVEFALSTGLRRSNIINMDWQQIDMQRKVAWIH 237 Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------------FSI 271 + K+ I V L D ++L + + + Sbjct: 238 PEQSKSNQAIGVALNDTACRVLKKQIGNHHKWVFVYKESSTKPDGTKSPVVRKMRYDANT 297 Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 +++ +AG+ + H +R A+ AG L GW++++ Y Sbjct: 298 AWRSALKRAGIEDFRFHDLRHTWASWLVQAGVPISVLQEMGGWESIEMVRRYAH------ 351 Query: 331 LGIKNSRRISSVVDS 345 L + + +DS Sbjct: 352 LAPNHLTEHARQIDS 366 >gi|288947732|ref|YP_003445115.1| integrase family protein [Allochromatium vinosum DSM 180] gi|288898248|gb|ADC64083.1| integrase family protein [Allochromatium vinosum DSM 180] Length = 308 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 46/308 (14%), Positives = 104/308 (33%), Gaps = 38/308 (12%) Query: 68 PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVE 124 T + ++ + A ++ + S R + D+R+ + + + Sbjct: 3 DKTFWDVRKDFMSHLRYTRGCAESTCYGYHSDLGIWGRWLDESEHDWRECSHIEVEQWIN 62 Query: 125 ----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 RK P + ++++ +KWA++ + V +P E+PK +++ Sbjct: 63 VQTRERKVKPHIISRRVSALSTFYKWALKSKLVETDPVYLAEKPKTPQRIPIWLERDEQD 122 Query: 181 QFKSFWSEGS-----------------QPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNI 221 + K + S + R F L SGLR S++ V+ ++ Sbjct: 123 RLKEALRDISDLPENIFGNTPETIMLIRQRYQVLFDLLQNSGLRISEALALRVRDVRVTG 182 Query: 222 FSIK--------TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273 + ++ + V + ++ P + F + + Sbjct: 183 QIARSVRVIGKGNKERMVPLPVAFGEELAAWISDLPSDEFIFAKESGGDPPKPRTVRDYL 242 Query: 274 KAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 KAG++K + H +R AT ++GA ++ A G + + YT +D Sbjct: 243 SKIIKKAGLDKKITPHKLRHTYATRLLESGAELIDIQALLGHANLATTQMYTHVSDDR-- 300 Query: 332 GIKNSRRI 339 ++ Sbjct: 301 MASVVAKL 308 >gi|213155654|ref|YP_002317699.1| IntI1 integrase [Acinetobacter baumannii AB0057] gi|301347157|ref|ZP_07227898.1| IntI1 integrase [Acinetobacter baumannii AB056] gi|213054814|gb|ACJ39716.1| IntI1 integrase [Acinetobacter baumannii AB0057] Length = 344 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 35/303 (11%), Positives = 85/303 (28%), Gaps = 52/303 (17%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132 ++ + R+ + ++ + ++ ++ IR G + + + + + + S Sbjct: 16 VLDQLRERIRYLHYSLRTEQAYVNWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 ++ L + + + + RP+ T +++ + + Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230 RL + L +G+R S+ + V+ L + +I ++ Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193 Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265 + + A + + M Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253 Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 F FK +AG+ K + H +R AT +G + G V YT Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313 Query: 324 KGA 326 Sbjct: 314 HVL 316 >gi|152985119|ref|YP_001350673.1| integrase/recombinase [Pseudomonas aeruginosa PA7] gi|150960277|gb|ABR82302.1| integrase/recombinase (E2 protein) [Pseudomonas aeruginosa PA7] Length = 337 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 36/303 (11%), Positives = 85/303 (28%), Gaps = 52/303 (17%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132 ++ + R+ + ++ + ++ + IR G + + + + + + S Sbjct: 16 VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 A ++ L + + + + RP+ T +++ + + Sbjct: 76 ASTHRQALAALLFFYGKVLCADLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230 RL + L +G+R S+ + V+ L + +I ++ Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLALGLREQLA 193 Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265 + + A + + M Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253 Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 F FK +AG+ K + H +R AT +G + G V YT Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313 Query: 324 KGA 326 Sbjct: 314 HVL 316 >gi|10955228|ref|NP_044257.1| hypothetical protein R751p48 [Enterobacter aerogenes] gi|32470064|ref|NP_863006.1| hypothetical protein p165897_094 [Escherichia coli] gi|53793938|ref|YP_112391.1| DNA integrase [uncultured bacterium] gi|60115543|ref|YP_209334.1| hypothetical protein SC029 [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|134047152|ref|YP_001102016.1| integrase IntI1 for transposon Tn21 [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|152973776|ref|YP_001338815.1| integrase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|157412100|ref|YP_001481441.1| IntI1 integrase [Escherichia coli APEC O1] gi|161867947|ref|YP_001598128.1| hypothetical protein pOU7519_85 [Salmonella enterica subsp. enterica serovar Choleraesuis] gi|168239505|ref|ZP_02664563.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|169797532|ref|YP_001715325.1| integrase/recombinase (E2 protein) [Acinetobacter baumannii AYE] gi|184156542|ref|YP_001844881.1| integrase [Acinetobacter baumannii ACICU] gi|237640301|ref|YP_002891156.1| IntI1 [Escherichia coli] gi|237810044|ref|YP_002894484.1| IntI1 [Escherichia coli] gi|294843384|ref|ZP_06788067.1| IntI1 [Acinetobacter sp. 6014059] gi|302141607|ref|YP_003813066.1| integrase type 1 [Klebsiella pneumoniae] gi|313116705|ref|YP_004032855.1| integrase [Edwardsiella tarda] gi|13344938|gb|AAK19119.1|AF263520_1 integrase INTI1 [Pseudomonas aeruginosa] gi|149117|gb|AAA92744.1| IntI1 integrase [Escherichia coli] gi|288634|emb|CAA51182.1| integrase [Klebsiella aerogenes] gi|1572565|gb|AAC64460.1| Int [Enterobacter aerogenes] gi|13508544|emb|CAC35169.1| DNA integrase IntI1 [Achromobacter denitrificans] gi|15375396|gb|AAK95981.1| IntI1 integrase [Escherichia coli] gi|17046108|dbj|BAB72152.1| DNA integrase [Escherichia coli] gi|17157973|gb|AAL36429.1| IntI1 integrase [Pseudomonas aeruginosa] gi|24527229|gb|AAM89398.1| IntI1 integrase [Klebsiella pneumoniae] gi|28629321|gb|AAO49601.1| IntI1 [Escherichia coli] gi|30524990|emb|CAD56838.1| Integrase INTI1 [Pseudomonas aeruginosa] gi|33358378|gb|AAQ16665.1| IntI1 [Escherichia coli] gi|45758101|gb|AAS76313.1| Int [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|53136974|emb|CAG30882.1| DNA integrase [uncultured bacterium] gi|56786620|gb|AAA92752.2| IntI1 integrase [Escherichia coli] gi|70905581|gb|AAZ14844.1| IntI1 [Acinetobacter baumannii] gi|72536052|gb|AAZ73121.1| IntI1 [Klebsiella pneumoniae] gi|78057541|gb|ABB17271.1| site-specific recombinase [Vibrio cholerae] gi|78709991|gb|ABB48427.1| IntI1 integrase [Salmonella enterica subsp. enterica serovar Kentucky] gi|84180556|gb|ABC54721.1| IntI1 [Vibrio cholerae] gi|86212237|tpd|FAA00063.1| TPA: IntI1 integrase [Escherichia coli] gi|90265400|emb|CAJ77082.1| Integrase [Acinetobacter baumannii] gi|99867125|gb|ABF67770.1| IntI1 integrase [Escherichia coli APEC O1] gi|108945866|gb|ABG23475.1| integrase [Morganella morganii] gi|110346525|emb|CAJ58443.1| class 1 DNA integrase [Pseudomonas aeruginosa] gi|126635814|gb|ABO21789.1| IntI1 [Pseudomonas aeruginosa] gi|133905071|gb|ABO41086.1| integrase IntI1 for transposon Tn21 [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|134034958|gb|ABO46012.1| integrase [Enterobacter cloacae] gi|148455749|gb|ABQ65123.1| IntI1 [Pseudomonas aeruginosa] gi|149850111|emb|CAG29002.1| IntI1 [Klebsiella pneumoniae] gi|150958558|gb|ABR80585.1| integrase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|161087326|gb|ABX56796.1| IntI1 [Salmonella enterica subsp. enterica serovar Choleraesuis] gi|169150459|emb|CAM88359.1| Integrase/recombinase (E2 protein) [Acinetobacter baumannii AYE] gi|183208136|gb|ACC55534.1| integrase [Acinetobacter baumannii ACICU] gi|191174836|emb|CAQ43032.1| DNA integrase [Pseudomonas aeruginosa] gi|197287812|gb|EDY27202.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|207999196|emb|CAQ52799.1| class 1 integrase [Pseudomonas aeruginosa] gi|222353664|emb|CAU08341.1| integrase [Pseudomonas aeruginosa] gi|223868914|gb|ACN22478.1| integrase 1 [Klebsiella oxytoca] gi|224983001|gb|ACN73419.1| IntI1 [Acinetobacter sp. NFM2] gi|225121196|gb|ACN81019.1| IntI1 integrase [Acinetobacter baumannii] gi|226876274|gb|ACO89459.1| IntI1 integrase [Cloning vector pPSX] gi|229561520|gb|ACQ77723.1| IntI1 [Escherichia coli] gi|229561900|gb|ACQ78101.1| IntI1 [Escherichia coli] gi|254595917|gb|ACT75274.1| integrase [Acinetobacter baumannii] gi|283148037|gb|ADB13428.1| class 1 integrase [Escherichia coli] gi|283484045|gb|ADB23335.1| IntI1 integrase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|289065298|gb|ADC80800.1| IntI1 [Escherichia coli] gi|289065323|gb|ADC80824.1| IntI1 [Escherichia coli] gi|294884937|gb|ADF47470.1| integrase [Pseudomonas aeruginosa] gi|296033872|gb|ADG84835.1| integrase type 1 [Klebsiella pneumoniae] gi|299757085|emb|CAB92435.2| class 1 integrase [Acinetobacter baumannii] gi|307639753|gb|ADN80878.1| IntI1 integrase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|311629588|gb|ACI29751.2| IntI1 [Pseudomonas aeruginosa] gi|312192342|gb|ADQ43828.1| integrase [Edwardsiella tarda] gi|316994927|gb|ADU79012.1| IntI1 [Aeromonas veronii] gi|317109966|gb|ADU90903.1| IntI1, DNA integrase [uncultured bacterium] gi|324007543|gb|EGB76762.1| integron integrase [Escherichia coli MS 57-2] Length = 337 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 35/303 (11%), Positives = 85/303 (28%), Gaps = 52/303 (17%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132 ++ + R+ + ++ + ++ ++ IR G + + + + + + S Sbjct: 16 VLDQLRERIRYLHYSLRTEQAYVNWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 ++ L + + + + RP+ T +++ + + Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230 RL + L +G+R S+ + V+ L + +I ++ Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193 Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265 + + A + + M Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253 Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 F FK +AG+ K + H +R AT +G + G V YT Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313 Query: 324 KGA 326 Sbjct: 314 HVL 316 >gi|328955478|ref|YP_004372811.1| integrase family protein [Coriobacterium glomerans PW2] gi|328455802|gb|AEB06996.1| integrase family protein [Coriobacterium glomerans PW2] Length = 304 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 46/285 (16%), Positives = 94/285 (32%), Gaps = 30/285 (10%) Query: 82 AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI--TTKHIRSGVESR---KHTPSSAIQF 136 + + ++E + + + +RS + + +P + Sbjct: 15 LQVDGCSPETARAYEGHLRAYLSWQRRAHLDGLVLEVPVVRSYLADLYDARRSPRTIAAH 74 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWSEGSQP 192 L+++R L +W + + + +++ P+ T R T++ M+Q + GS+ Sbjct: 75 LSAIRSLSRWLLLEGITKTDAVATMQTPRIPTGLPRTLTQQQMEQLLALPDTASPTGSRD 134 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMT--- 248 E L SG R S+ + L ++ K V L ++ L Sbjct: 135 AAILELLYASGARISEIAALDIASLDAEQRCVRLLGKGSKERIVPLYRRALRRLVSYLDE 194 Query: 249 -------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFS 293 + F++ ++M+A F+A A AG+ + H +R Sbjct: 195 GRPLLIRSRTLASDSDRTALFLSRRGRRMSADSLRCRFRAYARIAGLPADITPHAMRHTF 254 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338 AT GA + G ++ + YT RR Sbjct: 255 ATDLLAGGADMRSVQELLGHASLATTQLYTHLTPER--MKDALRR 297 >gi|50954597|ref|YP_061885.1| phage-related integrase [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951079|gb|AAT88780.1| phage-related integrase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 382 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 43/349 (12%), Positives = 101/349 (28%), Gaps = 38/349 (10%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 + + +RK + H +++++T + P T+ Sbjct: 9 DTVAGKRYRVRYRKPDKSQTDKRGFHTKKEAELFLASVT-VSKATGDYIDPALARVTVAD 67 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH---- 128 L + +L +S + ++ + G + R I ++ V Sbjct: 68 LAETWLAGKRPPTLKPSSFKPLLTSWNVHVEPTWGHREIRSILPSEVQGWVTRLGQPVIS 127 Query: 129 -----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + + ++ L + + A+ ++ NP S+ RK+ + Q Sbjct: 128 GGGDKSATVVLRALGVLAGILDMAIADRRISRNPARSLTNLPRKSRKVGRAYLTHDQLQT 187 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN------------------NIFSIK 225 + Y GLR ++ V+++ ++ + K Sbjct: 188 LAEKSAHPALVLTLG--YCGLRWGEATALRVRNVNQLRRRLHIEENAVLVGSDIHVGTPK 245 Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG---- 281 T + ++ + L + F + WF + Sbjct: 246 TWEQRSVPFPAFLSPMLAELCEGKGPNDLVFGKGRTHMKRGDYITGWFATAVRRVQSLDE 305 Query: 282 --VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD 327 + H +R +A+++ AGA + G + +TYT D Sbjct: 306 TMPRVTPHDLRHTAASLAVSAGANVKAVQKMLGHASASMTLDTYTDLFD 354 >gi|325981039|ref|YP_004293441.1| integrase family protein [Nitrosomonas sp. AL212] gi|325530558|gb|ADZ25279.1| integrase family protein [Nitrosomonas sp. AL212] Length = 337 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 40/337 (11%), Positives = 92/337 (27%), Gaps = 25/337 (7%) Query: 17 RHGKIIY-YFRKGHGRRIR-LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 + GK + F G R+R + T + L + + + K T Sbjct: 5 KRGKTWWISFTTPSGERVRCSAATEDKTQAQEFHDKLKAESWR--VVKLGDKPKRTWDEA 62 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--SRKHTPSS 132 ++ + + + + + ++T I E ++ + ++ Sbjct: 63 AYKWLMETQDKK----THHDDVAKINWLQQFFRGKYLDELTRDVIAGIGELKRKETSSAT 118 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 A + L +R + + A + R Q Sbjct: 119 ANRLLALIRSILRRAALDWEWID---KPPVIKLYREARRRVRYLSATQATMLIQELPQHL 175 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----TIITVELPDGFMKLLAMT 248 F L +GLR S+ + + I V L + +L Sbjct: 176 ADMVTFSLATGLRRSNVTKLEWSQVDMQRNVAWIHGDQAKAGKPIHVTLNATAIAVLTRQ 235 Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHEL 307 + + + + + +AG+ + H +R A+ G + + Sbjct: 236 IGKHPRSVFSYKGKPITQVN-TKAWYKALKRAGIEDFRWHDLRHTWASWLTQNGVPLNVI 294 Query: 308 MATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 W++ + Y L + + + V+D Sbjct: 295 QEMGAWESAEMVRRYAH------LAPEQFAQHARVLD 325 >gi|150010322|ref|YP_001305065.1| site-specific recombinase [Parabacteroides distasonis ATCC 8503] gi|149938746|gb|ABR45443.1| site-specific recombinase [Parabacteroides distasonis ATCC 8503] Length = 383 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 45/350 (12%), Positives = 100/350 (28%), Gaps = 25/350 (7%) Query: 11 VTKERTRHGKIIYYF-RKGHGRRI----RLPYPHESTFIPA--YMSALTGSTPKREYINS 63 + + + GK Y F R + + + A + + + + Sbjct: 28 LYLDIYKDGKRTYEFLRLYIIPEVDETAKARNANTLQAANAIKAQKIIELTNDEAGVTKN 87 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIRSG 122 + L + Y + I + +I+ GD +++ + Sbjct: 88 ASRSKMLLIDWMRHYSDHKLKTGQSAAFHIQIDKAIKHLIKYRGDTVTMKEVDKPYCLGF 147 Query: 123 VESRKHTPS---------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG--- 170 ++ + + + + AV++E + NP + R Sbjct: 148 IDYLNNAKRKDGKLMAKVTTAGYFRCLNCALNLAVKEEIIPYNPITKINPDDRIKIPEST 207 Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230 T ++++ + + A+ F + GLR D + + + + Sbjct: 208 REYLTVDEIKLLIASKCINEPTKQAYLFSCFCGLRLGDIQALTWGDVILDGSQYRVKIVM 267 Query: 231 TIITVELPDG-FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AH 287 L + L P + + AT ++ K A +G+ K+ H Sbjct: 268 KKTQKTLYLPLSDEALKWMPKRDDAKDTDKIFHLPYATYINVVLKTWAQNSGITKTITFH 327 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 R AT+ GA + G V Y K D+ + + Sbjct: 328 TARHTFATMMLTLGADLYTTSKLLGHTQVKTTTIYAKIVDKKK--DEAVN 375 >gi|9634162|ref|NP_037720.1| integrase [Enterobacteria phage HK97] gi|218694191|ref|YP_002401858.1| Integrase from phage [Escherichia coli 55989] gi|309797063|ref|ZP_07691462.1| phage integrase, SAM-like domain protein [Escherichia coli MS 145-7] gi|331676448|ref|ZP_08377145.1| integrase [Escherichia coli H591] gi|6901591|gb|AAF31094.1|AF069529_7 integrase [Enterobacteria phage HK97] gi|218350923|emb|CAU96623.1| Integrase from phage [Escherichia coli 55989] gi|308119346|gb|EFO56608.1| phage integrase, SAM-like domain protein [Escherichia coli MS 145-7] gi|331075941|gb|EGI47238.1| integrase [Escherichia coli H591] Length = 356 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 59/345 (17%), Positives = 109/345 (31%), Gaps = 23/345 (6%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALT---GSTPKREY 60 LPP + R+ Y G+ L A + + G K Sbjct: 9 RRDLPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLT 65 Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 TL + Y K + + I++ S I R D ITTK I Sbjct: 66 ARINSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIA 125 Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + + +SA +++ F+ A+ + ++ NP + K + R E Sbjct: 126 AMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEY 185 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 ++ +++ S RLA E + +G R D C + + ++ KTG I + Sbjct: 186 LKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTA 245 Query: 239 DGFMKLLAMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKAGV-----NK 284 L + ++ +++ S +F +G+ Sbjct: 246 LHVDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPP 305 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + H +R SA + + G K+ A Y R Sbjct: 306 TFHELRSLSA-RLYEKQISDKFAQHLLGHKSDTMASQYRDDRGRE 349 >gi|324009915|gb|EGB79134.1| phage integrase, SAM-like domain protein [Escherichia coli MS 57-2] Length = 357 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 62/345 (17%), Positives = 111/345 (32%), Gaps = 23/345 (6%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63 LPP + R+ Y G+ L A + + + Sbjct: 9 RRDLPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELLSDSGRKSLI 65 Query: 64 PRKK---PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 R K TL + Y + + + + + S I RK D I+TK + Sbjct: 66 DRIKGGDAITLHVWLDRYERILTERGIRPKTLLDYASKIRAIRRKLPDKPLTDISTKEVA 125 Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + + + +SA +++ +F+ A+ + +VA NP + K + R E Sbjct: 126 AMLNTYVAEGKAASAKLIRSTLVDVFREAIAEGHVATNPVTATRTAKSEVRRSRLTANEY 185 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 + + + RLA + + +G R D CR + +N I+ KTG + + L Sbjct: 186 VAIYHAAEPLPIWLRLAMDLAVVTGQRVGDLCRMKWSDINDNHLHIEQSKTGAKLAIPLT 245 Query: 239 DGFMKL---------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NK 284 L G ET + ++ S +F +G+ Sbjct: 246 LTIDALNISLADTLQKCREASGSETIIASKHHDPLSPKTVSKYFTKARNASGLSFDGDPP 305 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + H +R SA G K+ A Y R Sbjct: 306 TFHELRSLSA-RLYRNQIGDKFAQRLLGHKSYSMAARYRDSRGRE 349 >gi|317049649|ref|YP_004117297.1| integrase family protein [Pantoea sp. At-9b] gi|316951266|gb|ADU70741.1| integrase family protein [Pantoea sp. At-9b] Length = 343 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 45/334 (13%), Positives = 88/334 (26%), Gaps = 39/334 (11%) Query: 15 RTRHGKIIYYFRK--GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 + GK G+RIR +Y + + ++ + + Sbjct: 5 KLPSGKWQAQVFPSGRDGKRIR-RQFATKGEALSYEKYVKEQAQDKPWLG-EKADKRRVI 62 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR------ 126 L+ + + LA + G+ + K S E R Sbjct: 63 ELVELWFNTHGIT-LADG--EKRRTTMAFACEAMGNPLATEFNAKIFASYREQRLSGKIT 119 Query: 127 ------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 TP + L R +F R + L R + +E + + Sbjct: 120 RSTRVKTVTPRTVNLELAYFRAMFNELRRLDEWTAPNPLENVREFKISESEMAYLTIEEI 179 Query: 181 QFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237 + E S+ + + L +G R S++ ++ K V + Sbjct: 180 RALLAECENSRSKDLTTIVKICLATGARWSEAEGLKGNQIRAGQIIYVKTKGKKNRAVPI 239 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA-----HGVRKF 292 + L + ++ F F+ +AG+ + H +R Sbjct: 240 TEKLQAELPSSRKAQQLFATCYS-----------AFRKAMQRAGIE-TPAGQLTHVLRHT 287 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA 326 A+ G L G + Y A Sbjct: 288 FASHFMMNGGNILVLQRILGHTDIKVTMRYAHFA 321 >gi|238026028|ref|YP_002910259.1| phage-related integrase [Burkholderia glumae BGR1] gi|237875222|gb|ACR27555.1| Phage-related integrase [Burkholderia glumae BGR1] Length = 339 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 56/336 (16%), Positives = 109/336 (32%), Gaps = 23/336 (6%) Query: 2 TPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61 T +L LPP + ++T GK YY+ G R + F+ A E Sbjct: 6 TKNLHLPPRMRIKQTSSGKTYYYYDIGGKPRRWKALGGD--FVEALR-----LYADLEQG 58 Query: 62 NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHI 119 + T + + Y S AV +R + +++ +I HI Sbjct: 59 DRTASTLVTFRHVAERYLVDV-LPSKAVETRRTNLLQLEKLYSFFDSPPAPLDEIKPIHI 117 Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 R ++ RK +P SA + + +F A ++ E R D Sbjct: 118 RKYLDWRKASPVSANREIALFSHIFNKAREWGATDRPN--PCAGVRKHREAGRDVYVGDQ 175 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239 + + R A + +G R +D + + +++ + +++ KTG + +E+ Sbjct: 176 LYRRVWEKADIPLREAMDLAYLTGQRPADVLKMDERDIRDGVVTVRQNKTGARLRIEIVG 235 Query: 240 GFMKLLAMTPIGKETFFIN-------NDKQKMNATQFSIWFKAKATKAGV---NKSAHGV 289 LL K + + + F AG+ + Sbjct: 236 ELATLLDRIAARKIDHNPRSTRLIVDEQGRPLGQSALRFRFDRTREAAGIAKAEFQFRDL 295 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 R + T ++ + + G +V E Y + Sbjct: 296 RAKAGTD-KESASDLRGAQSLLGHGSVAMTEHYVRK 330 >gi|218559583|ref|YP_002392496.1| Integrase [Escherichia coli S88] gi|218366352|emb|CAR04103.1| Integrase [Escherichia coli S88] Length = 339 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 49/337 (14%), Positives = 95/337 (28%), Gaps = 47/337 (13%) Query: 14 ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + +GK + Y +G+R+R A+ S K+ ++ + L Sbjct: 4 RKQPNGKWLCECYPNGRNGKRVR-KQFATKGEAIAFESFTMEEVNKKPWLGEKEDRRH-L 61 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESY---FDQIIRKSGDFDYRKITTKHIRSGVESR-- 126 LI ++ SL + + I GD ++T E+R Sbjct: 62 SELIEQWY------SLYGQTLADPKRLIAKLRIICNGLGDPIASELTAGDFTKYREARLK 115 Query: 127 ------------KHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRP 173 P + ++ +F + + A NP + K + Sbjct: 116 GEVRNEDGTFMSPVKPRTVNLEQRNLSSVFGTLKKLGHWSAPNPLAGLPTFKIAESELAF 175 Query: 174 WTKEDMQQFKSFWSEG--SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 T E++++ ++ S L + L +G R S++ + + K Sbjct: 176 LTPEEIKRLLDACADSQSSSLLLIAKICLATGARWSEAENLQSHQVSKYRITYTKTKGKK 235 Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK----SAH 287 TV + + L T F+ +AG+ H Sbjct: 236 NRTVPISKDLYEELPKNRGKLFTPC-------------RKAFERAVKRAGLELPEGQCTH 282 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R A+ G L G + Y Sbjct: 283 VLRHTFASHFMMNGGNILVLRDILGHADIKMTMIYAH 319 >gi|83313141|ref|YP_423405.1| integrase [Magnetospirillum magneticum AMB-1] gi|82947982|dbj|BAE52846.1| Integrase [Magnetospirillum magneticum AMB-1] Length = 381 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 47/340 (13%), Positives = 114/340 (33%), Gaps = 32/340 (9%) Query: 26 RKGHGRRIRLPYPHESTFIPAYMSALT-------GSTPKREYINSPRKKPTTLKWLISEY 78 R G +R ++ ++ A AL G+ P + ++ P + + L++ + Sbjct: 50 RAGEEKRHKIGRSDVLSYDAARQEALRVLGEVQKGADPTAAIKQARQEGPLS-EELVN-W 107 Query: 79 RKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRS-GVESRKHTPSSAIQF 136 S ++ ++R ++ S + +I G IT I + + + + A Q Sbjct: 108 FDSH---TMKDSTRKTWRSVVNNHLIPALGSRKPSTITKADILAAYRDIQAKSGRQANQA 164 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP--WTKEDMQQFKSFWSEGSQPRL 194 + + + ++ + + + ++ + R +++ ++ + + + + Sbjct: 165 IIILSTFYNRTTDGKFNPASDFRNDKSIRKHRDAEREVVLSQDQVRALLADFDKSPAQQS 224 Query: 195 AFEFLL--YSGLRCSDSCRAGVQHLQNNIFS----IKTQKTGTIITVELPDGFMKLLAMT 248 A L Y+G R + + + K T+ L +L Sbjct: 225 ADAARLLFYTGARIGEILALRWDAVNLTQGTITLAHTMTKEAKAKTLHLSPRAQAILERR 284 Query: 249 PIGKETFFINNDKQKM---NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATA 304 + + ++KA + G+ H +R +TI +G +A Sbjct: 285 QEEALEGAEYVFPGRDGEAHQVVIKAFWKAACKRCGIEGVHIHDIRATYSTILIASGESA 344 Query: 305 HELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 + T G Y R+ ++ I+S VD Sbjct: 345 KAVGKTMGHADTKTTMRY------ERIAQDRAKDIASKVD 378 >gi|323187727|gb|EFZ73028.1| phage integrase family protein [Escherichia coli RN587/1] Length = 341 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 57/335 (17%), Positives = 100/335 (29%), Gaps = 39/335 (11%) Query: 6 RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65 RLPP V + Y + R + + A K E + R Sbjct: 12 RLPPNVYPNK-------YSYVWKPTSRESVTLTAIKDGLAALWK-------KYEETVNNR 57 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 + T L ++ SA + L+ ++ + + +++ G I +HIR ++ Sbjct: 58 DRAMTFGRLWEKFLASACYSELSPRTQKDYLQHQKKLLAVFGKVPADSIKPEHIRRYMDK 117 Query: 126 RK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 R + + A +SM ++ W + YV NPC V + K K KE Sbjct: 118 RGEQSKTQANHEKSSMSRVYSWGYERGYVKANPCAGVSKFKAKNRERYVTDKEYQAVLSV 177 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 +A E R SD + + N+ I+ KTG Sbjct: 178 AP---LPVFIAMEIAYLCAARISDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAA 234 Query: 245 LAMTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAGV------NKSAHGVRKFSATI 296 + N + F+ + +AG + + H + Sbjct: 235 IEKAKQLPTSAYVISNQYGNRYMYKGFNEMWVEARNRAGKISGILTDFTFHDL------- 287 Query: 297 SADAGATA-----HELMATYGWKTVDQAETYTKGA 326 G + + G KT Q Y + Sbjct: 288 -KAKGISDYEGSSRDKQLFSGHKTEGQVLIYDRKV 321 >gi|300907025|ref|ZP_07124694.1| phage integrase, SAM-like domain protein [Escherichia coli MS 84-1] gi|301304025|ref|ZP_07210142.1| phage integrase, SAM-like domain protein [Escherichia coli MS 124-1] gi|331682197|ref|ZP_08382819.1| integrase [Escherichia coli H299] gi|300401246|gb|EFJ84784.1| phage integrase, SAM-like domain protein [Escherichia coli MS 84-1] gi|300840632|gb|EFK68392.1| phage integrase, SAM-like domain protein [Escherichia coli MS 124-1] gi|315257687|gb|EFU37655.1| phage integrase, SAM-like domain protein [Escherichia coli MS 85-1] gi|331080621|gb|EGI51797.1| integrase [Escherichia coli H299] Length = 356 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 59/345 (17%), Positives = 109/345 (31%), Gaps = 23/345 (6%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALT---GSTPKREY 60 LPP + R+ Y G+ L A + + G K Sbjct: 9 RRDLPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLT 65 Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 TL + Y K + + I++ S I R D ITTK I Sbjct: 66 ARINSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIA 125 Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + + +SA +++ F+ A+ + ++ NP + K + R E Sbjct: 126 AMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEY 185 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 ++ +++ S RLA E + +G R D C + + ++ KTG I + Sbjct: 186 LKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTT 245 Query: 239 DGFMKLLAMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKAGV-----NK 284 L + ++ +++ S +F +G+ Sbjct: 246 LHVDALGISMKETLDKCKKILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPP 305 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + H +R SA + + G K+ A Y R Sbjct: 306 TFHELRSLSA-RLYEKQISDKFAQHLLGHKSDTMASQYRDDRGRE 349 >gi|227326878|ref|ZP_03830902.1| putative integrase [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 325 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 46/334 (13%), Positives = 89/334 (26%), Gaps = 35/334 (10%) Query: 28 GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87 G+R+R +Y L ++ +L L+ + H SL Sbjct: 9 RTGKRLR-KQFASKGEALSYERQL-KFGGVSIDTSAAEDAGQSLSELVQRWFD-MHGRSL 65 Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP-----------SSAIQF 136 A + + GD + TK + ++ + S+ + Sbjct: 66 ADG--EGRLRKLELLCANLGD-PIASLFTKADFAEYRKQRLSGKFGRFDKPVKESTINRE 122 Query: 137 LTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL- 194 + + +F R E+ NP + + K + +D++ + S P L Sbjct: 123 HSYLSAVFNELKRLGEWQGDNPLDGIRQYKESDSELAFLYHDDIRLILNECDASSNPDLG 182 Query: 195 -AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253 L +G R S++ L + K TV + +LL Sbjct: 183 SVVRICLATGARWSEAQELKQSQLVPYRVTYINTKGKRNRTVPISPELYQLLPRRRGQLF 242 Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGW 313 + F K + H +R A+ G L G Sbjct: 243 SPC---------YDAFRQALKRSQIDLPEGQLTHVLRHTFASHFMMNGGNILVLKDILGH 293 Query: 314 KTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347 ++ Y + ++ D Sbjct: 294 TSIQMTMRYAH------FAPDHLDAAVTLNPYDR 321 >gi|170747361|ref|YP_001753621.1| integrase family protein [Methylobacterium radiotolerans JCM 2831] gi|170653883|gb|ACB22938.1| integrase family protein [Methylobacterium radiotolerans JCM 2831] Length = 326 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 37/302 (12%), Positives = 82/302 (27%), Gaps = 32/302 (10%) Query: 71 LKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSG 122 L+ + + ++ A ++ N+ ++ Q + + + IR Sbjct: 23 LRDAVLAWIEALARERRMSSNTVEAYGRDLRQFLHHLASRQGTPTIPMLIGLKVRDIRGF 82 Query: 123 VESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT---- 175 + +R+ + S ++ L +R ++ R+ + ++ V PK RP Sbjct: 83 MAARRADEVSGRSLMRMLAGLRSFARFLEREGFGTVSALGGVRSPKVPRRLPRPLPVSAA 142 Query: 176 -----KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCR--AGVQHLQNNIFSIKTQK 228 + ++ L +GLR S++ L K Sbjct: 143 VALTDTAIRAGEEREPWVLARDAAVLALLYGAGLRISEALGLSRRDAPLPGVDQVTVLGK 202 Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ-------KMNATQFSIWFKAKATKAG 281 G V + + +A ++ G Sbjct: 203 GGKQRMVPILPVVAQAVADYVAACPLPLPPEGPLFLGARGGPLSPRIIQYTVARARGALG 262 Query: 282 VN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 + + H +R AT + G ++ + YT D RL + Sbjct: 263 LPESATPHALRHSFATHLLARQGELRAIQELLGHASLSTTQLYT-QVDAARLMSAYAAAH 321 Query: 340 SS 341 Sbjct: 322 PR 323 >gi|45766|emb|CAA33849.1| unnamed protein product [Plasmid R1033] gi|530804|gb|AAB59999.1| IntI1 integrase [Pseudomonas aeruginosa] Length = 337 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 35/303 (11%), Positives = 85/303 (28%), Gaps = 52/303 (17%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132 ++ + R+ + ++ + ++ ++ IR G + + + + + + S Sbjct: 16 VLDQLRERIRYLHYSLRTEQAYVNWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 ++ L + + + + RP+ T +++ + + Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230 RL + L +G+R S+ + V+ L + +I ++ Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPTLREQLS 193 Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265 + + A + + M Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253 Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 F FK +AG+ K + H +R AT +G + G V YT Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313 Query: 324 KGA 326 Sbjct: 314 HVL 316 >gi|329116727|ref|ZP_08245444.1| site-specific recombinase, phage integrase family [Streptococcus parauberis NCFD 2020] gi|326907132|gb|EGE54046.1| site-specific recombinase, phage integrase family [Streptococcus parauberis NCFD 2020] Length = 379 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 50/373 (13%), Positives = 113/373 (30%), Gaps = 51/373 (13%) Query: 18 HGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGS-------TPKREYINSPR 65 +GK Y+ R+ +++ + +S A L P +E + Sbjct: 8 NGKYRYFEKFYDSREEKWKQVTVTLNSKSRISQAEAKRLLAIKIDKVLSRPTKEEEQQLK 67 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 T L+ E+ K + S S + GD + TT+ I++ + Sbjct: 68 LANKTFSQLLEEW-KLVRISEIKPASFKSEINSLIYFRNDVGDLKLSEYTTQMIQNYLMG 126 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ---- 181 + + +F +A R Y+ P +V P+ + + + ++ Sbjct: 127 LNIANVTRKNRKIYLNAIFGFAERMNYIDKTPVKNVVIPRVRKDYEKLKKAQNHFISKEE 186 Query: 182 ------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 + + + LA EF+ +GLR ++ + + +K T + Sbjct: 187 LGLVISYCQNHDKDIRYTLAMEFIFLTGLRFAEFIGVRYCDVDFDNRLLKVDHTIDYVAH 246 Query: 236 EL----------------------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273 + + + F+ + Q M + + Sbjct: 247 NYDDRVLQTTKTVGSVRTIILSERCFEIIDYFKKYCLDEIFIFVTDRGQIMRQPKLYQFI 306 Query: 274 KAKATKA---GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRI 329 K A G + H +R ++ A+ G +M G + Y+ Sbjct: 307 KNMCDTALGEGRAYNIHMLRHSHISLLAELGVPIKAIMERVGHVDESITLKVYSHVT--K 364 Query: 330 RLGIKNSRRISSV 342 + ++++S+ Sbjct: 365 SIHDDVRKKLNSI 377 >gi|14600982|ref|NP_147508.1| tyrosine recombinase XerC/XerD [Aeropyrum pernix K1] gi|5104468|dbj|BAA79783.1| tyrosine recombinase XerC/XerD [Aeropyrum pernix K1] Length = 362 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 32/285 (11%), Positives = 77/285 (27%), Gaps = 19/285 (6%) Query: 50 ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF 109 A GS ++ +L+ + + + + + ++ G Sbjct: 2 ARAGSIESLPPPPRDIRE-YSLEDAARLFLTILESTGWSSKTIKVYRAALKDFLKSYGRV 60 Query: 110 DYRKITTKHIRSGVESRK-------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162 + + S + ++A + +R KWA + + Sbjct: 61 RVGDASHMTYVQWMSSVSERVRKGVISRTTAHYYSIMVRRFLKWAGVEGV--------MR 112 Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222 R + S L L +GLR S+ + + Sbjct: 113 PFSRGERRFSGSLSWRDVEALLSASRDIIDALIVSMLAETGLRVSELLSLRLSDVDLGRG 172 Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 ++ + ++L + ++ +++ K+ A +AG+ Sbjct: 173 VVRVVGKYGKERIVFLGPLSRMLLEEYLASNPLPPDSRIIELSYQAVYKRLKSLAKRAGL 232 Query: 283 N---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + H +R AT + G + L G + + Y Sbjct: 233 DPRKVRPHILRHTFATEALRRGMSLAALQRLLGHSDIKVTQLYLH 277 >gi|330998384|ref|ZP_08322208.1| site-specific recombinase, phage integrase family [Paraprevotella xylaniphila YIT 11841] gi|329568490|gb|EGG50295.1| site-specific recombinase, phage integrase family [Paraprevotella xylaniphila YIT 11841] Length = 397 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 54/366 (14%), Positives = 106/366 (28%), Gaps = 38/366 (10%) Query: 2 TPS-LRLPPFVTKERTRHGKIIYY---FRKGHGRRIRLPYPHESTFIPAY---------- 47 TP + P V + G Y +R G + L A Sbjct: 19 TPKQPKEPVRVRYKTLSDGSQSVYLDIYRDGKRQYEFLKLYLIPETNAAAKAQNKATLAA 78 Query: 48 ------MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ 101 + + N+ + L + Y++S + S + + Sbjct: 79 VNTIKSQRIIELTNGVAGLKNTSLRSKMLLLDWMQAYKESQEKKGVR-GSGKLISNTMNV 137 Query: 102 IIRKSGDFDYRKITTKHIRSGVESRKH---TPS-------SAIQFLTSMRVLFKWAVRQE 151 + + R IT + + ++ +PS + + + R AVR+E Sbjct: 138 LRAFNAKATMRDITRDFCLAFINFLRNIYVSPSGKKLSQFTCVSYFGCFRGALNAAVREE 197 Query: 152 YVAINPCLS---VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208 +A NP E+ K T ++++ + AF F Y GLR SD Sbjct: 198 IIAENPVNRLNTDEKIKMPESKREFLTIDEVKILIDTPCRREDVKGAFLFSCYCGLRISD 257 Query: 209 SCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA-- 266 +++ ++ + L + + Sbjct: 258 VLVLKWKNVDSSAEQWRINIIMQKTRQPLYLPLSMNARKWMPERNGAGDEDLVFPTLPCE 317 Query: 267 TQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 ++ K AG+ + + H R AT+ GA + + G V + Y K Sbjct: 318 DTCNVQLKPWVKAAGITKHVTYHVSRHTFATMLLTLGADLYTVCKLLGHSDVKTTQIYAK 377 Query: 325 GADRIR 330 ++ + Sbjct: 378 IINKKK 383 >gi|312792356|ref|YP_004025279.1| integrase family protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179496|gb|ADQ39666.1| integrase family protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 314 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 32/268 (11%), Positives = 80/268 (29%), Gaps = 14/268 (5%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 + + ++ + + ++ + + + + K S+ P Sbjct: 11 WQEAMQQFLFYKRAEGRSERTLSDYKYHITHFFDIYPNCFHDEQQLKKCLYEYLSQPIKP 70 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ---FKSFWS 187 ++ LT ++ FKW V + + NP + + K + + T+ + Sbjct: 71 ATYNLRLTYLKAFFKWCVEENILKSNPLEGLPKKKAEGRIVNIDTEILEKLLKLPDKNTF 130 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-----------IITVE 236 G + L +G+R ++ ++H + +T Sbjct: 131 CGLRDYALILLTLDTGIRPKEAFSLLIEHFDFKTLQVFIPSNAAKTRVSRVLPILPVTAN 190 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296 + + K F + + + + + + K GV + +R A + Sbjct: 191 AVKKLIAVRHPEWDEKVPVFCTVTGRPLTSDIWHGRIEMYSKKLGVKIRPYDLRHTFALL 250 Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324 G L T G T++ + Y Sbjct: 251 YLKNGGFELSLQKTLGHTTLEMTKRYVH 278 >gi|220929268|ref|YP_002506177.1| integrase family protein [Clostridium cellulolyticum H10] gi|219999596|gb|ACL76197.1| integrase family protein [Clostridium cellulolyticum H10] Length = 413 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 41/375 (10%), Positives = 99/375 (26%), Gaps = 64/375 (17%) Query: 36 PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF 95 P E + + + + T+ I + ++ + + Sbjct: 37 PRLTEKQREKELQKQVVLFEEEVKSGSYYEPTKMTMSEFIELWLD-KKKNNIESKTHQGY 95 Query: 96 ESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH------------TPSSAIQFLTSMRV 142 ++++ GD + H+ + E+ + + +S + + ++ Sbjct: 96 SGLLKGRVLKVMGDTKIIDLKPLHLINFYENLQELGIREDGREGKLSTNSILHYHRALNA 155 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR-LAFEFLLY 201 +F VR + NPC V PK + + ++ + Q S L Sbjct: 156 MFGDGVRWGLIKENPCSKVRPPKVVKKEMSCLDEDQIPQLISALCNEPIDISTFITLDLV 215 Query: 202 SGLRCSDSCRAGVQHLQ------------------------------------------- 218 +GLR + C ++ Sbjct: 216 TGLRRGELCGLQWDNVNLKDNTIVVEQAVSYTPETGTIIKTPKTKSSIRKITIPKTTSDL 275 Query: 219 ---NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275 + ++ + + ++ T E F D M+ + FK Sbjct: 276 LSIYRKWWLEQKIKVGDQWQKSAREEVEKNGQTWEDPEYLFTTWDGYVMHPDTLTKTFKK 335 Query: 276 KATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG-ADRIRLG 332 + + H +R +AT+ AG + A G + + Y+ + Sbjct: 336 FIKRNNLPDIRLHDLRHTAATMLIHAGLNIRAVAARMGHENPNVTLAIYSHALLSADKQA 395 Query: 333 IKNSRRISSVVDSDD 347 + ++ Sbjct: 396 ADVMGNLIKKKPQNE 410 >gi|149370706|ref|ZP_01890395.1| tyrosine type site-specific recombinase [unidentified eubacterium SCB49] gi|149356257|gb|EDM44814.1| tyrosine type site-specific recombinase [unidentified eubacterium SCB49] Length = 284 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 35/263 (13%), Positives = 89/263 (33%), Gaps = 17/263 (6%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----KHTPSS 132 +++K L+ N+ +++ + + ++ + +R + + S Sbjct: 16 QFKKWMEEQRLSHNTIMTYSNAVSLFLNYIVKHGTTEMNEEWVRRFNYDYIIKNRFSISY 75 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 Q ++ ++ ++ + ERP + +K+++++ + + Sbjct: 76 QNQCISGVKKYLEFRG-----LAVTLENYERPDKGKTLPAVLSKQEVKRLLD-GIKNLKH 129 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMTPI 250 + + SGLR ++ + + I+ K V L ++ L Sbjct: 130 KTLLSLVYSSGLRIGEALSLRPTAIDSTRKLIFIEGAKGKKDRYVLLSSKLLEDLRKYYT 189 Query: 251 GKETFFINNDKQ---KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAH 305 + + +A+ FK+ A +AG+ K H +R AT + G Sbjct: 190 VYRPKTYLFEGRSGTMYSASSARAVFKSAAKRAGITKEVRLHTLRHSFATHLLENGTDLR 249 Query: 306 ELMATYGWKTVDQAETYTKGADR 328 + G ++ YT + R Sbjct: 250 YIQQLLGHQSPKTTMIYTHVSTR 272 >gi|323165681|gb|EFZ51467.1| integrase [Shigella sonnei 53G] Length = 356 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 58/345 (16%), Positives = 108/345 (31%), Gaps = 23/345 (6%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALT---GSTPKREY 60 LPP + R+ Y G+ L A + + G K Sbjct: 9 RRDLPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLT 65 Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 TL + Y K + + I++ S I R D ITTK I Sbjct: 66 ARINSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIA 125 Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + + +SA +++ F+ A+ + ++ P + K + R E Sbjct: 126 AMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTKPVAATRAAKSEVRRSRLTADEY 185 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 ++ +++ S RLA E + +G R D C + + ++ KTG I + Sbjct: 186 LKIYQTAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTT 245 Query: 239 DGFMKLLAMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKAGV-----NK 284 L + ++ +++ S +F +G+ Sbjct: 246 LHVDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPP 305 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + H +R SA + + G K+ A Y R Sbjct: 306 TFHELRSLSA-RLYEKQISDKFAQHLLGHKSDTMASQYRDDRGRE 349 >gi|291514360|emb|CBK63570.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301] Length = 368 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 59/359 (16%), Positives = 121/359 (33%), Gaps = 34/359 (9%) Query: 10 FVTKERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR-- 65 + ++ T+ G+ +Y + KG R L A + I S R Sbjct: 8 RLRRKATQSGESLYLDIYFKGKRRYEFLRLYLIPERTKADRLKNEQTLRLAIAIKSRRTI 67 Query: 66 ---KKPTTLKW------LISEYRKSAHWGSLAVNSRISFESYFD----QIIRKSGDF-DY 111 LI Y + L RI + FD + + GD Sbjct: 68 ELFNNKYGFATEKPDVNLIE-YIQLVAANKLKQG-RIGIKGTFDTLVYHLTKYHGDKIAL 125 Query: 112 RKITTKHIRSGVESRKH----------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161 + I ++++ V+ SS TS++++ A++ E V +P SV Sbjct: 126 QDIDIRYVKGFVQYLSTAIARTSGEVLKSSSQHNIYTSLKIIIHQAIKDELVTSDPTKSV 185 Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221 + P+ T+E++++ + +F F ++GLR SD + + + Sbjct: 186 DPPRMVLPHKEHLTEEELKRLIQTPCPKEMVKRSFLFCCFTGLRISDVQKLIWKEVVTTN 245 Query: 222 FSIKTQKTGTIITVELPDGFMK-LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280 +E + +++ P +E ++ + K + + Sbjct: 246 NETYINFRQKKTKIENYVPLSENAISVLPSKRENTETDSVFDLPKESTIRKVLKKWVSDS 305 Query: 281 GVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNS 336 G++K + H R AT+ ++G + + G + Y K D+ R + + Sbjct: 306 GIDKHITFHCARHTCATLLLNSGVDIYTVKEILGHTDIGTTMQYAKVVDKTKREAVNSI 364 >gi|186471361|ref|YP_001862679.1| integrase family protein [Burkholderia phymatum STM815] gi|186474500|ref|YP_001863471.1| integrase family protein [Burkholderia phymatum STM815] gi|186474622|ref|YP_001863593.1| integrase family protein [Burkholderia phymatum STM815] gi|184197670|gb|ACC75633.1| integrase family protein [Burkholderia phymatum STM815] gi|184198459|gb|ACC76421.1| integrase family protein [Burkholderia phymatum STM815] gi|184198581|gb|ACC76543.1| integrase family protein [Burkholderia phymatum STM815] Length = 292 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 40/265 (15%), Positives = 85/265 (32%), Gaps = 18/265 (6%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHT 129 L +LA N++ S+ R + + IR+ E RK Sbjct: 4 LRQRMLHDMQIRNLAENTQKSYLIQVSSFARHF-RRSPELLGPEEIRAWLIYLREERKLA 62 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 P+S + ++R L++ +++++ P++ + E++ F Sbjct: 63 PASLSPAIGALRFLYRVTLKRDWSD----EDFPLPRKPVRLPVVLSLEEITTFFDSI-PS 117 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--TGTIITVELPDGFMKLLAM 247 + R +GLR S+ V + + I+ + V L +++L Sbjct: 118 LKHRTILMVAYAAGLRVSEVVHLKVTDIDSKRMVIRVNQGKNRKDRYVMLSPRLLEILRT 177 Query: 248 TPIGKETFFI----NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301 + + S + G+ K + H +R AT +AG Sbjct: 178 YWQDAHPRGWLFPGDIPGHPITRGAVSRICALARQRCGIRKPITPHSLRHAFATHLLEAG 237 Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326 + G +++ Y + A Sbjct: 238 TDVRRIQLLMGHRSLATTSRYLRIA 262 >gi|57233840|ref|YP_182174.1| phage integrase family site specific recombinase [Dehalococcoides ethenogenes 195] gi|57224288|gb|AAW39345.1| site-specific recombinase, phage integrase family [Dehalococcoides ethenogenes 195] Length = 386 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 41/357 (11%), Positives = 103/357 (28%), Gaps = 49/357 (13%) Query: 17 RHGKIIYYFRKGHGRRIRLPYPHE-----STFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + G Y + G+ A L + + + +T+ Sbjct: 7 KRGN-SYRVKISLGKDSASGKYLSHYETVKGNKKAAEKRLNELIHQFDSGTFVKPGKSTM 65 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESY-FDQIIRKSGDFDYRKITTKHIRSGVESRKH-- 128 + + +L+ + + II G+ ++ +H++ ++ Sbjct: 66 YEYMQSWLNDYCKPNLSPRTVELYSYISTKHIIPTLGNIPIVELKPQHLQHLYADKQSFG 125 Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + + + K AV+ ++ N +V+ PK + ++ + DMQ Sbjct: 126 LSNRTVQIIHVVLHKALKNAVKTGLLSRNIAEAVDAPKIQRHEMQVMNESDMQVLLEKAK 185 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---------------- 231 E + F L++G+R ++ + + + ++ Sbjct: 186 E-TPYYALFYTSLFTGMRRAECLALRWSDIDLILCQVYVLRSMQYVQDADLGKRITFKEP 244 Query: 232 -----IITVELPDGFMKLLAMTPIGKET---------------FFINNDKQKMNATQFSI 271 + L + +L + F + D + + Sbjct: 245 KTSKSRRQIALSPSNVIILREHYQDQSELRKTLNLPGLTDSDLVFSHYDGSPLLPNSVTH 304 Query: 272 WFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA 326 + A + G+N H R A++ G + G ++ +TY+ A Sbjct: 305 AWIKLARRCGLNGIRLHDARHTHASLLLKQGVHPKIVQERLGHGSIQITLDTYSHVA 361 >gi|94499085|ref|ZP_01305623.1| site-specific recombinase, phage integrase family protein [Oceanobacter sp. RED65] gi|94428717|gb|EAT13689.1| site-specific recombinase, phage integrase family protein [Oceanobacter sp. RED65] Length = 319 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 40/305 (13%), Positives = 80/305 (26%), Gaps = 53/305 (17%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 + + R + + ++ + I G + + S + A Sbjct: 6 FLDKVRNRMRMAGYSERTIKTYIYWIKYFIHFHGKRHPETLHNDEVCSFLSHLASNKHMA 65 Query: 134 -IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 T++ L + Q L +R+ + T+++++ + G + Sbjct: 66 INSQKTALNAL-AFLYNQFLKQPLGDLGFVYAQRQRRLPQVLTQQEVK--RIINELGERD 122 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNI------------------------------- 221 RL + SGLR S+ R V+ + Sbjct: 123 RLIVSLMYGSGLRISECLRLRVKDIHFETGSLDVIDGKGGKDRKTILSKNIVGDLQNQIQ 182 Query: 222 ---------------FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA 266 S+ + +M + T I K + + ++ Sbjct: 183 NSIALQEKDNLSGLGPSLPGALGRKLPNAYRQPAWMFVFPSTTICKHPITGIHCRHHLHE 242 Query: 267 TQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 T AG+ + H R AT AG + G K V + YT Sbjct: 243 TVMRKALAKACKSAGIYNKRITCHTFRHSFATELLRAGRDIRTVQELLGHKDVSTTQIYT 302 Query: 324 KGADR 328 + Sbjct: 303 HVVGQ 307 >gi|77463785|ref|YP_353289.1| phage-related integrase [Rhodobacter sphaeroides 2.4.1] gi|77388203|gb|ABA79388.1| possible phage-related integrase [Rhodobacter sphaeroides 2.4.1] Length = 413 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 56/371 (15%), Positives = 119/371 (32%), Gaps = 43/371 (11%) Query: 10 FVTKERTRHGKIIYYFRKGHG---RRIRLPYP------HESTFIPAYMSALTGSTPKREY 60 + GK + R HG RR+ L ++A + T Sbjct: 27 GLYLIVQPTGKKGWQVRYRHGGVHRRMSLGAFPVLSLAGARERARQTLAAASAGTDPAAE 86 Query: 61 INSPRKKP-----TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115 + + + +K LI ++ K + ++ G+ D +I Sbjct: 87 VKAAKAPKLDGDRDKIKTLIGQFDKRHLSKLKSGAVVR--RELERHVVSAWGERDVHQIG 144 Query: 116 TKHIRSGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 + + ++ + +A + + F W V ++ +A +P V+ ++T R Sbjct: 145 KRDVIDLLDGIADSGRVVTANRVRAYLAKFFGWCVERDILATSPAAGVKPAGKETSRARV 204 Query: 174 WTKEDMQQFKSFWS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 T ++++ F + EG + LL +G R ++ + ++ +++ + +T Sbjct: 205 LTDDEIRWFWTACEAEGFPWGPFGKVLLLTGQRLNEVAQMTDSEIRGDLWHLTADRTKNG 264 Query: 233 ITVELP--DGFMKLLAMTPIGKETFFINNDKQKMNATQ-FSIWFKAKATKA----GV--- 282 ++P L + S +FKA+A A G+ Sbjct: 265 RAHDVPLTGAVRAALDEVERVTDEEGRVRFIFTTTGRTPVSGFFKARAVLAEAMVGIAQK 324 Query: 283 ---------NKSAHGVRKFSATISADAGATAHELMATYGWKTVD---QAETYTKG--ADR 328 + H +R+ +AT A G A + Y + AD Sbjct: 325 ERGEPVEIPRWTFHDLRRTAATGMARLGIPVRVTEAVLNHVSGTGGGIVAVYQRHDYADE 384 Query: 329 IRLGIKNSRRI 339 R ++ R Sbjct: 385 KRQALEAWARF 395 >gi|330898878|gb|EGH30297.1| site-specific recombinase, phage integrase family protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 349 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 43/333 (12%), Positives = 99/333 (29%), Gaps = 25/333 (7%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 +T G RK + + YI + TL+ Sbjct: 6 KTPSGTWKALIRKTGWP-TAAKTFRTKRDAEDWSRRTEDEMVRGVYIQRSGSERMTLEAA 64 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-------- 126 + Y ++ S ++I G + ++ + I + R Sbjct: 65 LKRYLSDITPTK-KPTTQRGETSKAKKLIEHLGKYSLAALSAEIIAGYRDKRLNEKGRAG 123 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + ++ L + LF A+++ + NP L++ +P R + ++ ++ + Sbjct: 124 TASNNTVRLELALLSHLFTVAIQEWGLGLTFNPVLNIRKPSPGEGRNRRLSADEERRLMA 183 Query: 185 FWSEGSQPRLAFE--FLLYSGLRCSDSCRAGVQHLQ----------NNIFSIKTQKTGTI 232 + S P L + L +G+R ++ + +T Sbjct: 184 AVNRHSNPMLGWIVGIALETGMRSAEINTLRKPMVDLERRIVKLVDTKNDGQRTVPLSKR 243 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRK 291 T F + F+ + + + G+ + H +R Sbjct: 244 ATELFKAAMANPARPGDCQLVFFGEPGKDKNRRPYAFTKIWGSLVKELGLSDFRFHDLRH 303 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324 + + + G + E+ A G K++ + YT Sbjct: 304 EAVSRLVEGGLSDQEVSAISGHKSMQMLKRYTH 336 >gi|254465304|ref|ZP_05078715.1| phage integrase [Rhodobacterales bacterium Y4I] gi|206686212|gb|EDZ46694.1| phage integrase [Rhodobacterales bacterium Y4I] Length = 292 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 42/268 (15%), Positives = 84/268 (31%), Gaps = 18/268 (6%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS---GVESRKHTP 130 L + + L + S T +R+ + R TP Sbjct: 9 LRARMIEDMRIKGLGDKCQKSHIRAIKDFAAFL-RRSPDTATPDDLRAYQLHMTDRGVTP 67 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-FWSEG 189 + + ++R F+ + + + + + + ++ E++ G Sbjct: 68 PTYNARIIALRFFFETTCGRGEMKRHM----QFRTQPRKLPVVFSAEEVAALLQVAPGPG 123 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAM 247 + R A +GLR S+ C V + ++ ++ K V L G + LL Sbjct: 124 LKYRAALSISYGAGLRASEVCNLKVSDIDSDRMLIHVEQGKGRKDRKVMLSPGLLNLLRE 183 Query: 248 TPIGKETFFI----NNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADA 300 +++ Q F + AG+ K + H +R AT +A Sbjct: 184 YWREARPEGWLFPGKPKINPVSSRQLHRAFSSAKLIAGIKKPGSTLHTLRHSFATHLLEA 243 Query: 301 GATAHELMATYGWKTVDQAETYTKGADR 328 G + G ++ E YT A + Sbjct: 244 GTDVRVIQVLLGHAKLETTERYTHVATK 271 >gi|2668483|dbj|BAA23767.1| integrase [Pseudomonas aeruginosa] Length = 337 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 35/303 (11%), Positives = 83/303 (27%), Gaps = 52/303 (17%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132 ++ + R+ + ++ + ++ IR G + + + + + + S Sbjct: 16 VLDQLRERIRYLHYSLRTEQAYVHCVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 ++ L + + + + RP+ T +++ + + Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230 RL + L +G+R S+ + V+ L + +I ++ Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193 Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265 + + A + + M Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253 Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 F FK +AG+ K + H +R AT +G + G V YT Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313 Query: 324 KGA 326 Sbjct: 314 HVL 316 >gi|323701134|ref|ZP_08112809.1| integrase family protein [Desulfotomaculum nigrificans DSM 574] gi|323533736|gb|EGB23600.1| integrase family protein [Desulfotomaculum nigrificans DSM 574] Length = 394 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 52/365 (14%), Positives = 111/365 (30%), Gaps = 43/365 (11%) Query: 13 KERTRHGKIIYYF---RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 ++R+++ Y R G+R RL + T A + + + Sbjct: 6 QKRSKN-SWTIYIEMGRDTEGKRKRLCRAFKGTKKEA-EKEMARLLLEIDSGQYIEPTKL 63 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR-- 126 T + + +LA + S++ II + G +K+ H++ + Sbjct: 64 TFGDYLLNWLTDYGKSNLANTTYYSYQKIIEKHIIPEIGGILLQKLQPMHLQKYYSLKLD 123 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + + +R K AV+ + V N +V PK + I + E + +F Sbjct: 124 SLSKRTVQYHHRVIREALKHAVQLQAVTRNVADAVAAPKPQRPEINMPSIEKINEFLVAA 183 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----------------IFSIKTQKT 229 SE Q L +G+R + + + + Sbjct: 184 SEH-QDWSIIYTTLLTGMRRGEVMGLRWSDVDFKQKVLHVRQTLQRLPKIGFYFAPPKSK 242 Query: 230 GTIITVELPDGFMKLLAMTPIGKETFF--------------INNDKQKMNATQFSIWFKA 275 + V +P+ +++L + D + ++ + +K Sbjct: 243 KSRRPVVMPEALIEVLKNHRKKQMENMLEMGEHYQDNNLVFCRPDGTPEDPSRLNHRYKD 302 Query: 276 KATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKT-VDQAETYTKGA-DRIRLG 332 G+N H +R AT+ + + G +T + + YT R Sbjct: 303 LVDGIGMNGFRFHDLRHLHATLLMEQHVHPKIVQERLGHQTFIITLDLYTHSIPTMQREA 362 Query: 333 IKNSR 337 + Sbjct: 363 AEKIN 367 >gi|260844576|ref|YP_003222354.1| integrase [Escherichia coli O103:H2 str. 12009] gi|257759723|dbj|BAI31220.1| integrase [Escherichia coli O103:H2 str. 12009] Length = 341 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 55/335 (16%), Positives = 101/335 (30%), Gaps = 39/335 (11%) Query: 6 RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65 +LPP V + Y + R + + A + E + R Sbjct: 12 KLPPNVYPNK-------YSYVWKPTSRESVTLTAIKDGLAALWK-------RYEETVNNR 57 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 + T L ++ SA++ L+ ++ + + +++ G I +HIR ++ Sbjct: 58 DRAMTFGRLWEKFLASAYYSDLSPRTQKDYLQHQKKLLAVFGKVPADSIKPEHIRRYMDK 117 Query: 126 RK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 R + + A +SM ++ W + YV NPC V + K K KE Sbjct: 118 RGEQSKTQANHEKSSMSRVYSWGYERGYVKGNPCAGVSKFKAKNRERYVTDKEYQAVLSV 177 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 +A E R SD + + N+ I+ KTG Sbjct: 178 AP---LPVFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAA 234 Query: 245 LAMTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAGV------NKSAHGVRKFSATI 296 + N + F+ + +AG + + H + Sbjct: 235 IEKAKQLPTSAYVISNQYGNRYMYKGFNEMWVEARNRAGKISGILTDFTFHDL------- 287 Query: 297 SADAGATA-----HELMATYGWKTVDQAETYTKGA 326 G + + G KT Q Y + Sbjct: 288 -KAKGISDYEGSSRDKQLFSGHKTEGQVLIYDRKV 321 >gi|237718794|ref|ZP_04549275.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|229451926|gb|EEO57717.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] Length = 407 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 46/343 (13%), Positives = 88/343 (25%), Gaps = 32/343 (9%) Query: 23 YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY-INSPRKKPTTLKWLISEYRKS 81 Y K R + + + + Y S Sbjct: 74 YLIDKPRTPAERQQNKETLELATKIRAEREQEFKESMLGYRLKKDRTVNFLDYFQAYINS 133 Query: 82 AHWGSLAVNSRISFES---YFDQIIRKSGD--------FDYRKITTKHIRSGVESRKHT- 129 ++ + + IT + + V + Sbjct: 134 Y--------TKKDIRMVQIALSRFKDFLKEQYPMNEFSIKPELITKEMMEQFVAYLQSRS 185 Query: 130 -PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187 A + + ++A+ + + +PC SV + + Q + Sbjct: 186 VGEGAKSIYQRFKKVIRYAIDHDVMLKDPCKSVTCKVDSQMLRKDVLSPEEIQKLAACHY 245 Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL- 244 E R AF F LY GLR D +++ +K +++ T + L Sbjct: 246 DNENPNVRRAFIFCLYCGLRFCDVKDLTYKNVDYANRLLKFEQSKTKGHSASSGVVIPLN 305 Query: 245 --LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 L K +AG++K S H R A + Sbjct: 306 DGLLSIIGEAPADKNCLIFDLPTYESCCKSVKRWVKRAGIDKHISWHCARHSFAVNILNN 365 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343 GA + + G + E YT+ D +L + + + Sbjct: 366 GANIKTVASLLGHSGLKHTEKYTRAVD--KLKEEAINSLPELK 406 >gi|304360893|ref|YP_003857013.1| gp41 [Mycobacterium phage CrimD] gi|302858642|gb|ADL71387.1| gp41 [Mycobacterium phage CrimD] Length = 362 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 44/335 (13%), Positives = 88/335 (26%), Gaps = 31/335 (9%) Query: 17 RHGKIIYYFRKGHGRRIRLPYPHES----TFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 + G + + F + + TL Sbjct: 10 KDGSTYTSVLYRLNGKQTSTSFDDPVQAVEFKRMVEQLGAAKALEVIETTDAAARHYTLS 69 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGV---ESRKH 128 + Y + ++ +E I G +T I V R Sbjct: 70 EWLRHYLDHK--TGVEKSTIYDYEKVVAKDIDPVLGPIPLAALTGDDIAKWVQALAERGL 127 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + + AVR + NP P+ + + T+E + + Sbjct: 128 KGKTISNKHGFLSSALNAAVRAGRIPGNPAAGARLPRTEKAEMVFLTREQYAKLHDNITL 187 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV------------- 235 QP + EFL+ SG R + + + +++ + Sbjct: 188 PWQPLV--EFLVASGARWGEVVALRPSDVNRDASTVRISRASKRTYEKGSYSVGAPKTHK 245 Query: 236 --ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS-IWFKAKATKAGVNKSA--HGVR 290 + +L E F NN + F ++ +AG++ H +R Sbjct: 246 SVRTINVDASVLDKLDYSGEHLFTNNVGNPVRHNNFHANVWQPALKRAGLDVKPRVHDLR 305 Query: 291 KFSATISADAGATAHELMATYGWKTVD-QAETYTK 324 A+ AG + G +++ +TY Sbjct: 306 HTCASWLIAAGVPLPAIRDHLGHESIKITVDTYGH 340 >gi|229820647|ref|YP_002882173.1| tyrosine recombinase XerD [Beutenbergia cavernae DSM 12333] gi|229566560|gb|ACQ80411.1| tyrosine recombinase XerD [Beutenbergia cavernae DSM 12333] Length = 311 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 41/282 (14%), Positives = 91/282 (32%), Gaps = 33/282 (11%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSGVESRKHT- 129 + +Y L+ ++ ++ + G + + + VE+ + Sbjct: 10 LEDYLAHLGVERGLSPHTLAAYRRDLSRYAAYLGALGRARLSDVRPADVDAYVEALRTGS 69 Query: 130 -------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 SSA + + ++R ++A+ + +P + V P + ED+++ Sbjct: 70 DGGSALSASSASRAVVAVRGWHRFAMLEGIAPSDPAVDVRPPSTTKRLPKAIAVEDVERL 129 Query: 183 KSFWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE- 236 S G + R E L +G R +++ V + + + + G Sbjct: 130 LVAASAGDGPGPLRDRALLELLYGTGARITEATSLAVDDIDLDDDAGSVRLFGKGRRERV 189 Query: 237 -------------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV- 282 +LA G F+ + ++ ++ A +A + Sbjct: 190 VPLGRFARDAVDAYLVRARPVLAQAGTGTPALFLGMRGRPLSRQSAWAILQSAARRADLE 249 Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + S H +R AT GA + G +V + YT Sbjct: 250 EHVSPHTLRHSYATHLLAGGADVRVVQELLGHASVTTTQLYT 291 >gi|160946088|ref|ZP_02093302.1| hypothetical protein PEPMIC_00037 [Parvimonas micra ATCC 33270] gi|158447820|gb|EDP24815.1| hypothetical protein PEPMIC_00037 [Parvimonas micra ATCC 33270] Length = 383 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 36/350 (10%), Positives = 97/350 (27%), Gaps = 39/350 (11%) Query: 18 HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77 Y + + A K + Sbjct: 8 GNGWRYRVSYKDAGKYKTKTKGGFRTKKECELAAAELEKKLHVGMDISAGDRLFAEYMRT 67 Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS--AIQ 135 + + G + + E + +++T + + + ++ + Sbjct: 68 WFELYQNGKHSPEHDRNIERSVKLVEEHFPGVKMKELTREMYQKFINEISPKYATDTVKK 127 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLS---VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 T ++ + A+++ + +P + K E ++ ++Q+ + + +P Sbjct: 128 RHTYIKACLQEAIQEGIIFKDPTYKVIIKGKKDTKNEELKYLNFNEVQKLVAETKKDLRP 187 Query: 193 RLAFEFLLY----SGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------TII 233 R +++ +G R S+ + +I KT + Sbjct: 188 RYISRYVILFAIATGARFSEIMGITWDCVDFKNRTITINKTWDFKDTNDFSDTKNYASKR 247 Query: 234 TVELPDGFMKLLAMTPIGKETF-------------FINNDKQKMNATQFSIWFKAKATKA 280 T+ + + +L + F+N Q ++ + + A Sbjct: 248 TITIDTETVDMLQTLKSEQNKKALQTGLRNKKNLVFVNTKMQLVSNNAVNKTLRTLCKAA 307 Query: 281 GVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADR 328 + + HG+R A++ G + G K + +TY+ D Sbjct: 308 KIKEITCHGLRHTHASMLLYKGVNIKYISRRLGHKDIVTTLQTYSHILDE 357 >gi|325679322|ref|ZP_08158907.1| phage integrase, N-terminal SAM-like domain protein [Ruminococcus albus 8] gi|324108919|gb|EGC03150.1| phage integrase, N-terminal SAM-like domain protein [Ruminococcus albus 8] Length = 336 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 37/306 (12%), Positives = 95/306 (31%), Gaps = 43/306 (14%) Query: 73 WLISEYRKSAH-WGSLAVNSRISFESYFDQIIRK--------------SGDFDYRKITTK 117 +++Y + + ++ +R D ++ Sbjct: 11 DYLADYLTYMRLVKGRSDRTVEAYYIDLRTFLRYLLINHNDADPNKVEFEDIAISEVPFD 70 Query: 118 HIRSGV------------ESRKHTPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERP 164 +I+ + R ++ + + ++++ + + ++ ++ +P +E P Sbjct: 71 YIKKIRLIDAYNYLKWLADERGNSIKTRARKTSALKQFYSYLHLKKGLISSDPIEQLELP 130 Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIF 222 K + T D Q+ + + R L+ G+R S+ C + Sbjct: 131 KLPKTLPKYLTLGDAQKLLAAVESANYERDYCMITLFLNCGMRLSELCGLNTDDISFENG 190 Query: 223 SIK-TQKTGTIITVELPDGFMKLLAMTPIGKETFFIN-------NDKQKMNATQFSIWFK 274 +++ K V + D ++ L + N +++ + Sbjct: 191 TMRLFGKGSKERIVYMNDACVEALKAYLPRRSAVQTTDKALFLSNRNTRISRRMTQYIVE 250 Query: 275 AKATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADR-I 329 KAG+ + H +R +AT+ G L G +++ E YT + + Sbjct: 251 ESLKKAGLGNLGITTHKLRHTAATLMYQYGNVDTLVLKDILGHESLATTEIYTHLTSQNL 310 Query: 330 RLGIKN 335 R Sbjct: 311 RDAANA 316 >gi|226945661|ref|YP_002800734.1| phage integrase [Azotobacter vinelandii DJ] gi|226720588|gb|ACO79759.1| Phage integrase [Azotobacter vinelandii DJ] Length = 400 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 59/367 (16%), Positives = 101/367 (27%), Gaps = 27/367 (7%) Query: 9 PFVTKERTRHGKI----IYYFRKGHGRRIRLPYPHESTFIPAY-----MSALTGSTPKRE 59 P + T G+ Y G R+ L E T A A Sbjct: 29 PGFLCKITPAGRKVFMLQYRTNAGERRKPALGQYGELTVEQARVMAQEWLAEVRRGGDPS 88 Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKH 118 +K T+K + + + +++ + D+ II G + + Sbjct: 89 AAKVAARKAPTMKEYCTTFMEDYSKQRNKPSTQRGYRGVIDRNIIPILGRMKVQDVKRPD 148 Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT--- 175 + + ++ H P+ A + +R +F A P Sbjct: 149 VAALMKKLAHKPAEANRTFGVLRKMFNLAEVWGLRPDGTNPCRHVPMFPPGKETRLIVDD 208 Query: 176 -----KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230 ++ ++ E LA R S+ C + + + Sbjct: 209 ELVRIFRHLEHMEAEGLENYVIPLAIRLQFEFAARRSEICPLEWDWVDLEKRRVVWPDSK 268 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW-----FKAKATKAGVNK- 284 T + L +E + +K AGV Sbjct: 269 TGGISKPMSEEAYRLLSRAPRREGCPYVLPSPNDPTRHLTFGEHYGGWKRVLRAAGVPHV 328 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIK--NSRRISS 341 HG+R S T A++G MA G KTV Y D+ +R + SRR + Sbjct: 329 GTHGIRHRSTTDIANSGVPTKVGMALTGHKTVAMFMHYVHTEDKPVRDAAELVASRRQAI 388 Query: 342 VVDSDDP 348 S P Sbjct: 389 TGGSPRP 395 >gi|15639386|ref|NP_218835.1| integrase/recombinase (xprB) [Treponema pallidum subsp. pallidum str. Nichols] gi|189025628|ref|YP_001933400.1| integrase/recombinase [Treponema pallidum subsp. pallidum SS14] gi|3322673|gb|AAC65379.1| integrase/recombinase (xprB) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018203|gb|ACD70821.1| integrase/recombinase [Treponema pallidum subsp. pallidum SS14] gi|291059785|gb|ADD72520.1| tyrosine recombinase XerC [Treponema pallidum subsp. pallidum str. Chicago] Length = 297 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 38/280 (13%), Positives = 78/280 (27%), Gaps = 25/280 (8%) Query: 75 ISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHTP- 130 ++Y + L+ ++ ++ + R ++T +R V Sbjct: 6 FTQYLEYLFRVRRLSAHTVSAYARDLNLFERWLQHAQRACARVTVSDMRLFVCELGRRGL 65 Query: 131 --SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +S + L+ +R + +A ++ + A NP V K ++ R + F + S Sbjct: 66 SAASINRVLSVVRGFYVFAKKKHWCADNPARLVRNIKGPSKLPRFMFPPQAKAFYTLPSR 125 Query: 189 GS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFM 242 + F L +G R S+ ++ + + +I K TV + Sbjct: 126 TDILWQERDAALFAMLYSTGCRVSEIAALSLKDVHPHLSSAIVRGKGDRERTVFIAPFAQ 185 Query: 243 KLLAMTPIGKETFFINNDKQKM-----------NATQFSIWFKAKATKAGV--NKSAHGV 289 L + + + A S H Sbjct: 186 NFLHVYMQARAQRCARYASCTPALFVNQRGRSLSVRGIQYLVSRYVLLAQDVHALSPHAF 245 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R A+ GA G +V + Y Sbjct: 246 RHSFASTLIRRGADVRVAQELLGHASVSTTQRYVHVTSEQ 285 >gi|83312747|ref|YP_423011.1| integrase [Magnetospirillum magneticum AMB-1] gi|82947588|dbj|BAE52452.1| Integrase [Magnetospirillum magneticum AMB-1] Length = 363 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 52/332 (15%), Positives = 103/332 (31%), Gaps = 14/332 (4%) Query: 11 VTKERTRHG---KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67 +TK R G R+ T A+ +L G + +I+ + Sbjct: 35 ITKRFNRDGELIGWQAKIRRHGFPTQS-KTFDRKTDADAWARSLEGEMDRGAFIDRRPAE 93 Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR- 126 TL I Y + + + F + + + T HI + R Sbjct: 94 QMTLADAIRHYLDAVAPTHKGADVEAARLGRFLREEPDLCRYALSNLRTHHIEDYRDRRL 153 Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 P S + + + + + R+ + NP V RPK E + ++ Q S Sbjct: 154 EAVAPGSLCREINLLHAVLESVRRRVGLVDNPVSHVRRPKVNDERDVRLSLDEEAQLLSA 213 Query: 186 WSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 P + L + +R + +H+ + +T +P Sbjct: 214 LDATRNPWIKPFVIVALETAMRRGEMLALRWEHVDLVQQTAHLPETKNGKGRTVPLSSRA 273 Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGA 302 + + I ++ + +AG++ H +R + + A+ G Sbjct: 274 V---KTLEALPRSIGGAVFPVSLDSLKHAWTRARDRAGLHHFHLHDLRHEATSRLAERGW 330 Query: 303 TAHELMATYGWKTVDQAETYT--KGADRIRLG 332 EL A G + + + YT + AD + Sbjct: 331 NILELAAVTGHQDLQMLKRYTNLRAADLAKKM 362 >gi|328913318|gb|AEB64914.1| Tyrosine recombinase xerC [Bacillus amyloliquefaciens LL3] Length = 385 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 43/369 (11%), Positives = 105/369 (28%), Gaps = 57/369 (15%) Query: 14 ERTRHGKIIYYFRKGH-----GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 + +G Y R + + + + N ++ Sbjct: 5 RKHSNGTWEYRIRYKDKSSNKYKETSKRGFKTKKEAQLAAAQIETDIEYYGFANDGKE-- 62 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK 127 ++K S++ + ++ + E I+ + G+ + ++ + + + Sbjct: 63 -SIKEYFSKWLEVYKKPNVKPITYSLQERNVRLNILPRWGEVKLKDVSRTEYQKWINELR 121 Query: 128 --HTPSSAIQFLTSMRVLFKWAVRQEYV-AINPCLSVERPKRKT-----------EGIRP 173 ++ + + + M AV + + NP ++ PK + + Sbjct: 122 FNYSEGTVRRIHSLMNTALNDAVHEFRILRENPVTRIKIPKETKNNKEIKFFTVDQLEKF 181 Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--- 230 + Q S + Q + F + +GLR ++ + +IK KT Sbjct: 182 LNQVKEPQKNSKYKHSIQYYVLFSLMARTGLRIGEALALTWNDIDFEECTIKVNKTLVYP 241 Query: 231 -----------------------------TIITVELPDGFMKLLAMTPIGKETFFINNDK 261 + + +K + F +D Sbjct: 242 TNSTPYLSTPKSKAGLRIIKLDIHTVQLLKKHRINRKEVVLKYKNYKKPEDDIVFYQHDG 301 Query: 262 QKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD-QA 319 + + +FK +A + S H +R A +A A + G ++ A Sbjct: 302 RWLRTNVVREYFKEICKRAELPILSPHALRHSHAVHLIEAKADLKFVSERLGHSSIKITA 361 Query: 320 ETYTKGADR 328 +TY + Sbjct: 362 DTYLHVTKK 370 >gi|327483029|gb|AEA77436.1| Tyrosine recombinase XerC [Vibrio cholerae LMA3894-4] Length = 267 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 36/260 (13%), Positives = 84/260 (32%), Gaps = 20/260 (7%) Query: 107 GDFDYRKITTKHIR---SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163 G + ++ + +R + + SS L+S+R + + + + NP V Sbjct: 9 GLTHWTQLDSAWVRQLVMQGKRQGMKASSIATRLSSLRSFLDFLILRGELEANPAKGVSA 68 Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220 P+++ + ++M Q + + R E + +GLR ++ V+ + + Sbjct: 69 PRKQRTLPKNLDVDEMAQLLEVTDDDPLSIRDRAIMELMYGAGLRLAELVSIDVKDVNLS 128 Query: 221 IFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETF--------FINNDKQKMNATQFSI 271 I+ V + + + F++ +++ Sbjct: 129 EGEIRVIGKGNKERKVWFAGQAQEWVGKWLKLRSQLADSAETALFVSKLGTRISHRSVQK 188 Query: 272 WFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 K V + S H +R AT ++ + G + + + YT D Sbjct: 189 RMAEWGQKQAVASHISPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTH-LDFQ 247 Query: 330 RLG--IKNSRRISSVVDSDD 347 L + + + DD Sbjct: 248 HLAQVYDQAHPRARKKNKDD 267 >gi|183602443|ref|ZP_02963809.1| phage-related integrase [Bifidobacterium animalis subsp. lactis HN019] gi|219683244|ref|YP_002469627.1| phage-related integrase [Bifidobacterium animalis subsp. lactis AD011] gi|241191203|ref|YP_002968597.1| phage-related integrase [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196609|ref|YP_002970164.1| phage-related integrase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218362|gb|EDT89007.1| phage-related integrase [Bifidobacterium animalis subsp. lactis HN019] gi|219620894|gb|ACL29051.1| phage-related integrase [Bifidobacterium animalis subsp. lactis AD011] gi|240249595|gb|ACS46535.1| phage-related integrase [Bifidobacterium animalis subsp. lactis Bl-04] gi|240251163|gb|ACS48102.1| phage-related integrase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289177317|gb|ADC84563.1| DNA integration/recombination/inversion protein [Bifidobacterium animalis subsp. lactis BB-12] gi|295794196|gb|ADG33731.1| phage-related integrase [Bifidobacterium animalis subsp. lactis V9] Length = 366 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 48/339 (14%), Positives = 101/339 (29%), Gaps = 35/339 (10%) Query: 20 KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79 K +R GR R A+ + + + T + L + Sbjct: 15 KWEVRYRTPGGRTTRKRGFLRKMDAEAWAAENVEIAKAKGTFITQSAGNTPVAELWQSWI 74 Query: 80 KSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSSAIQF 136 ++ + S + + + G I ++ V ++ S I+ Sbjct: 75 ETKRTR-CKPSYMESLGGAWNKHVGPQWGARKVGSIRHDEVQEWVNKLAGEYSASVVIRA 133 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196 ++ L K AV+ +A NP + P++K + T E + + E R A Sbjct: 134 RDMLKGLLKAAVKNRLIASNPADDITVPRKKRKDHVYLTAEQL---MALADEAGWRRPAV 190 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII-----------TVELPDGFMKLL 245 L +G+R + V+ L ++ ++ + + + +L Sbjct: 191 LALGTTGMRWGELVGLRVRDLDAKGHRLRIERNAVEVKGEVVIGTPKTYEKRTITYPAIL 250 Query: 246 AMTPIGKET-----------FFINNDKQKMNATQFSIWFKAKATKA-----GVNKSAHGV 289 + ++ S WF +A + H + Sbjct: 251 EPMLVEMAQGRDGDEPLFVDQQGKMLRRTHGPNSPSSWFYWAKKRALGDVLARKMTVHDL 310 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD 327 R +A++ AGA + G ++ +TY D Sbjct: 311 RHTAASLLVSAGANVKVVQRQLGHESAAMTLDTYADLFD 349 >gi|189424492|ref|YP_001951669.1| integrase [Geobacter lovleyi SZ] gi|189420751|gb|ACD95149.1| integrase family protein [Geobacter lovleyi SZ] Length = 421 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 49/369 (13%), Positives = 96/369 (26%), Gaps = 59/369 (15%) Query: 19 GKIIY--YFRKGHGR--RIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK-----PT 69 G Y +R G+ RI + T A A ++ IN +K Sbjct: 50 GAKTYLVRYRLPGGKQSRIIIGRHTLYTPAQARDKAEKILRNIKDGINPKVEKQHPKVSH 109 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSGVESR 126 T K + + + A R ++ ++ + D +IT + R Sbjct: 110 TFKSFLED-----EYSPWAEAQRKDGKATVKRLKSRFSDFLELPLTEITPLIVDKWRTGR 164 Query: 127 ---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT--------------- 168 P++ + LT+++ AV E++ +P V+ K + Sbjct: 165 LKDSKRPATCNRDLTAIKAFLSKAVEWEHLEHHPLAKVKPLKVDSVAKVRFLSADEEKRL 224 Query: 169 ------------------EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210 R + + S + L +G+R + Sbjct: 225 LKALDDREEVARAERATANLWRKERGYPLYTDLNSVSFADHLKPMILVSLNTGIRWGELA 284 Query: 211 RAGVQHLQNNIFSIKTQKTG----TIITVELPDGFMKLLAMTPIGKETFFINNDKQ-KMN 265 + + V L + L + + K Sbjct: 285 SLAWDSVDMKKALVTVIGDKAKSGKTRHVPLNSIALNALKDWKKQSSGDVVFPGRDGKKT 344 Query: 266 ATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + +KA A + H +R A+ AG + + G + Y Sbjct: 345 LDNVNKSWKAVLDAAQIKNFRWHDMRHHFASWLVMAGVDLNTVRELLGHSDLKMTLRYAH 404 Query: 325 GADRIRLGI 333 A + Sbjct: 405 LAPEHKAAA 413 >gi|146276169|ref|YP_001166328.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025] gi|145554410|gb|ABP69023.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025] Length = 413 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 60/367 (16%), Positives = 116/367 (31%), Gaps = 40/367 (10%) Query: 10 FVTKERTRHGKIIYYFRKGH---GRRIRLPYPHESTFIPAYMSALTGSTP---------- 56 + GK + R H RR+ L + A A Sbjct: 27 GLYLVVQPTGKKGWQVRYRHAGVHRRMTLGGFPVLSLAQARQKAREALAAASEGRDPAEE 86 Query: 57 -KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115 K P + +I + K + + + + +++ K G+ D R IT Sbjct: 87 VKAAKAPKPENDRDKVATVIDLFLKRHASRNRRADDVAA--QFQREVLGKWGERDIRSIT 144 Query: 116 TKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 + + ++ + +P SA + + LF WA ++ + +NP V+ P + R Sbjct: 145 KRDVIDVLDGVVDRGSPISANRLRAHLNTLFNWAKSRDIIEVNPLDGVKPPAPEKPRDRV 204 Query: 174 WTKEDMQQ-FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG 230 T E+++ +K G + LL +G R + + + K G Sbjct: 205 LTNEEIRLLWKVSGKMGYPFGDIYRLLLLTGQRLREVAELPWREIDGATWTLPGPRSKNG 264 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN-----ATQFSIWFKAKATK---AG- 281 + L +++ P F ++ + A + AG Sbjct: 265 DEHVIPLSPEAREIIEAAPKVGRFVFSTTGLTPVSGFTRAKERLDGLMADAANEDLPAGA 324 Query: 282 -----VNKSAHGVRKFSATISADAGATAHELMATYGWKTVD---QAETYTK--GADRIRL 331 + H +R+ +AT A H + A ++ A Y + AD R Sbjct: 325 EPVTVPPFTIHDLRRTAATGMAGLRFPPHVVEAVLNHRSGTRRGVAGVYNRFDYADEKRQ 384 Query: 332 GIKNSRR 338 ++ R Sbjct: 385 ALETWAR 391 >gi|329116924|ref|ZP_08245641.1| site-specific recombinase, phage integrase family [Streptococcus parauberis NCFD 2020] gi|326907329|gb|EGE54243.1| site-specific recombinase, phage integrase family [Streptococcus parauberis NCFD 2020] Length = 381 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 46/381 (12%), Positives = 117/381 (30%), Gaps = 50/381 (13%) Query: 11 VTKERTRHGKIIYYFRK--------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62 +T+ + + G I+Y + G R + + A E ++ Sbjct: 3 ITEYKKKDGTIMYRSQIYLGVDSVTGKKARTSVSGRTKKELKNNIKLAKYEFQANGETVS 62 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRS 121 + T L+ + ++ + + D ++ G KI+ I+S Sbjct: 63 KKVQVK-TYSQLVELWLENYKLT-IKPQTYRVTTRLIDCHLLPYFGKMKVEKISNTDIQS 120 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK----- 176 V + + + ++ V + NP V PK++ G Sbjct: 121 FVNGLSSKLVNFRTVNSINTRVLQYGVSLNLIPFNPARDVILPKKQKAGRDSVKFIDTND 180 Query: 177 -----EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 M++ + ++ LL +GLR ++ + +I K+ + Sbjct: 181 LKTLLNFMEKQSFRRYRYQVEYVFYKLLLATGLRIGEAVALEWSDIDLENATIDINKSFS 240 Query: 232 I--------------ITVELPDGFMKLLAMTPIGKETFFI------------NNDKQKMN 265 + + + LL + + + F ++ ++ Sbjct: 241 QELRLVSTTKTKAGTRLISIDKETVNLLKLYQVRQRQLFHEVGGGVPKVAFATPTREYLS 300 Query: 266 ATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYT 323 ++ + G+ + + H R A++ +AG + EL G + + Y+ Sbjct: 301 RLTLQNNLNSRCERLGIPRFTFHAFRHTHASLLLNAGISYKELQYRLGHSNIAMTLDVYS 360 Query: 324 KGA-DRIRLGIKNSRRISSVV 343 + D+ + + + + + Sbjct: 361 HLSKDKEKEAVSYYEKAINSI 381 >gi|312794237|ref|YP_004027160.1| integrase family protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181377|gb|ADQ41547.1| integrase family protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 290 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 38/282 (13%), Positives = 89/282 (31%), Gaps = 24/282 (8%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR------- 126 L+ E+ + + I++ + ++ + V ++ Sbjct: 3 LLEEFEQWLRAIDHTQKTVINYVKDIELFLKWYEQTTGEEFRPSAYNEFVLTQYKSYMLT 62 Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG--IRPWTKEDMQQF 182 K PSS + + ++R + V + Y+ NP ++++ K + +K+D+ + Sbjct: 63 VQKLKPSSVNRKIQALRKFGCFLVAKGYLQTNPAENLKQVKDVRDNLAPAALSKQDVFRL 122 Query: 183 KSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 + + R E L +GLR S+ ++ ++ K + G Sbjct: 123 RKTVYMYGKIRDIAIIELFLNTGLRLSELANLKIEDIEIGERKGKLRVLGKGRKYREIPL 182 Query: 241 FMKLLAMTPIGKETFFINNDKQKMN--------ATQFSIWFKAKATKAGVNKSAHGVRKF 292 ++ + E + K A +AG+ H +R Sbjct: 183 NSEIRKILSQYLEKRKHIDCDFLFTTSTGKPLQPNSIYRLVKRYAERAGIELHPHMLRHT 242 Query: 293 SATISADAGATAHELMATYGWKTVDQAETY---TKGADRIRL 331 A D G ++ G + ++ Y ++ L Sbjct: 243 FAQTLIDKGTNVFDVKYLLGHEKLETTMRYKQPSREVQEKAL 284 >gi|262382819|ref|ZP_06075956.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262295697|gb|EEY83628.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 407 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 46/343 (13%), Positives = 87/343 (25%), Gaps = 32/343 (9%) Query: 23 YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY-INSPRKKPTTLKWLISEYRKS 81 Y K R + + + + Y + Sbjct: 74 YLIDKPRTPAERRQNKETLELATKIRAEREQEFKESMLGYRLKKDRTVNFLDYFQAYINN 133 Query: 82 AHWGSLAVNSRISFES---YFDQIIRKSGD--------FDYRKITTKHIRSGVESRKHT- 129 ++ + + IT + + V + Sbjct: 134 Y--------TKKDIRMVQIALSRFKDFLKEQYPMNEFSIKPELITKEMMEQFVAYLQSRS 185 Query: 130 -PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187 A + + ++A+ + + NPC SV + + Q Sbjct: 186 VGEGAKSIYQRFKKVIRYAIEHDVMLKNPCKSVTCKVDSQMLRKDVLSPEEIQKLVACHY 245 Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL- 244 E R AF F LY GLR D +++ +K +++ T + L Sbjct: 246 DNENPNVRRAFVFCLYCGLRFCDVKDLTYKNVDYANRLLKFEQSKTKGHSASSGVVIPLN 305 Query: 245 --LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 L K +AG++K S H R A + Sbjct: 306 DGLLSIIGEAPADKNCLIFDLPTYESCCKSVKRWVKRAGIDKHISWHCARHSFAVNILNN 365 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343 GA + + G + E YT+ D +L + + + Sbjct: 366 GANIKTVASLLGHSGLKHTEKYTRAVD--KLKEEAINSLPELK 406 >gi|254975655|ref|ZP_05272127.1| integrase [Clostridium difficile QCD-66c26] gi|255093041|ref|ZP_05322519.1| integrase [Clostridium difficile CIP 107932] gi|255101198|ref|ZP_05330175.1| integrase [Clostridium difficile QCD-63q42] gi|255314783|ref|ZP_05356366.1| integrase [Clostridium difficile QCD-76w55] gi|255517458|ref|ZP_05385134.1| integrase [Clostridium difficile QCD-97b34] gi|255650568|ref|ZP_05397470.1| integrase [Clostridium difficile QCD-37x79] Length = 370 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 47/365 (12%), Positives = 109/365 (29%), Gaps = 38/365 (10%) Query: 13 KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 ++R ++ + F + + L T+ Sbjct: 6 RKRNKNYVVYLEFEDEKTGKRKQKNMGTFDKKREASKRLNEVKESLYNDGFLVPSEITVS 65 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT-- 129 + ++ ++++ + ++ S I G + + + HI++ ++ + Sbjct: 66 EFLLDFLNKYS-ENISLATYNNYVSICKNYINPSIGKYKIQDLHPVHIQNYIDKLSYKLN 124 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 P S + +++ K A R + + N S+E P+ K + +E M + + Sbjct: 125 PQSIKIHINILKLAIKRAYRLKLIKENVMDSIEAPRYKKFKNEIYDREQMIKLLDLA-KN 183 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------------I 233 ++ L + GLR S+ ++ +I K + Sbjct: 184 TEMELPINLAIGLGLRISEVLGLTWDNIDFEENTITVNKITSRINGSVILKEPKTESSVR 243 Query: 234 TVELPDGFMKLLAMTPIGKETF-------------FINNDKQKMNATQFSIWFKAKATKA 280 + P M LL I + F N + + S FK K Sbjct: 244 KISSPKELMSLLKEYKIKQNKNLLKSSIRNNNNLLFFNKKCEPIAEDVMSKKFKRFLEKN 303 Query: 281 GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRR 338 + H +R T+ ++ + G + Y+ + + S + Sbjct: 304 ELPHIRFHDLRHSHVTLLINSKVPIKVISERVGHSNISTTLSVYSHVL--KEMDKEASDK 361 Query: 339 ISSVV 343 IS + Sbjct: 362 ISESL 366 >gi|1403511|emb|CAA67039.1| integrase [Pseudomonas aeruginosa] Length = 336 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 35/303 (11%), Positives = 84/303 (27%), Gaps = 52/303 (17%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132 ++ + R+ + ++ + ++ + IR G + + + + + + S Sbjct: 16 VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 ++ L + + + + RP+ T +++ + + Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230 RL + L +G+R S+ + V+ L + +I ++ Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPTLREQLS 193 Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265 + + A + + M Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253 Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 F FK +AG+ K + H +R AT +G + G V YT Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313 Query: 324 KGA 326 Sbjct: 314 HVL 316 >gi|85372970|ref|YP_457032.1| site-specific recombinase, phage integrase family protein [Erythrobacter litoralis HTCC2594] gi|84786053|gb|ABC62235.1| site-specific recombinase, phage integrase family protein [Erythrobacter litoralis HTCC2594] Length = 330 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 37/275 (13%), Positives = 84/275 (30%), Gaps = 9/275 (3%) Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHI 119 + K E+ ++R + +Y ++I + G I I Sbjct: 37 TAPEKLKAPLFAEFAEEFWLDYSPH-WKPSTRDASRAYIDKRLIPRFGALSVDAIERADI 95 Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 +S + + + + V+ ++A + Y N + K + + D Sbjct: 96 NRWRDSMADVGGAFNRSIPVLSVMMQYAEKLGYREKNTNPCRGVSRFKRDLPERYLSADE 155 Query: 180 QQFK-----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234 + + A L+Y+G R S+ ++++ ++ KTG T Sbjct: 156 YRRLGKVLAEHNGANAFVVPALLLLIYTGARVSEIATLRWRYVELPRLALPDSKTG-PKT 214 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFS 293 + L + +L + + + ++ KA + H +R Sbjct: 215 IYLNPQAIAVLDGLQRRGDDQLVFPAMYREVPINLGQHWEKIRRKAALPDVRLHDLRHSF 274 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 A+++ G + G + Y AD Sbjct: 275 ASVAIAKGIPLATIGKLLGHALPETTARYAHLADE 309 >gi|301328247|ref|ZP_07221367.1| site-specific recombinase, phage integrase family [Escherichia coli MS 78-1] gi|300845276|gb|EFK73036.1| site-specific recombinase, phage integrase family [Escherichia coli MS 78-1] Length = 336 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 44/309 (14%), Positives = 93/309 (30%), Gaps = 27/309 (8%) Query: 26 RKGHGRRIRLPYPHESTF--IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83 R G+RIR + ++ Y A R TL L+ + K H Sbjct: 28 RGRDGKRIRRKFERKAEAVAFERYTIAYASQKE----WAGQRADRRTLSELLDIWWK-YH 82 Query: 84 WGSLAVNSRISFESYFDQIIRK---SGDFDYRKITTKHI---RSGVESRKHTPSSAIQFL 137 + ++ F+ +++ GD +++ + + RS + ++ + + Sbjct: 83 GQNHEHGTKE-----FNHLLKTISGIGDIPVSRMSKRALMDYRSMRLRNGISAATINRDM 137 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197 + +F ++ + + + P E + K L Sbjct: 138 YRLSGMFTKLIQLDEFSGQHPI-HGLPPLAEANPEMTFLEKAEIEKLLNVLDGDDLLVAL 196 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI 257 L +G R ++ + N + K G TV ++ K Sbjct: 197 LCLSTGGRWTEVATLKPAQITNCRVTFLKTKNGKKRTVP--------ISEELEKKVKEEA 248 Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317 + K++ +F + N++ H +R A+ G L G ++ Sbjct: 249 SAKLFKVDYEKFCGILRRVKPDIPPNQATHILRHTFASHFMMNGGNIIALQQILGHASIQ 308 Query: 318 QAETYTKGA 326 Q Y A Sbjct: 309 QTMAYAHLA 317 >gi|182437392|ref|YP_001825111.1| putative phage integrase [Streptomyces griseus subsp. griseus NBRC 13350] gi|178465908|dbj|BAG20428.1| putative phage integrase [Streptomyces griseus subsp. griseus NBRC 13350] Length = 423 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 53/405 (13%), Positives = 112/405 (27%), Gaps = 75/405 (18%) Query: 15 RTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 + + G+ Y + G R R ++ S LT Sbjct: 14 KRKDGRYQAAAYVFRPDGTRTRKFAYGKT--REEVASQLTEMQEMTRQGIPAASSTMAFG 71 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG--------- 122 ++ + + L + S+E I G +++ +R Sbjct: 72 DYLTYWLATIAPERLKPATLNSYEGLSRLYIRPALGKKRLNRLSPADVRRFLAEFKAACL 131 Query: 123 ----------------------VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 R+ + + +R + A+R+E +A N Sbjct: 132 CCLRGADEERPEDKRTCCAVGRCCKRRPSARTVQYIHAVLRSALQQAIREELIARNVARI 191 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV------ 214 VE P + + +RP +++ + + L+ +GLR ++ Sbjct: 192 VETPTVEPKEVRPLDAAEVRLLLKTARPH-RLYALWLLLVSTGLRRGEALGLTWADVDLT 250 Query: 215 ----------QHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264 Q ++ + + ++ T+ LP ++ L +E + Sbjct: 251 AGTLRVRRNVQRIRRELIFGTPKTMRSVRTISLPKSCVQALTAHRTQQEREQKVAGAKWQ 310 Query: 265 -------------------NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATA 304 + + A V + H +R A++ G A Sbjct: 311 QTPGQPAGLVFTTLTGRVTDPRSLNRMLTILCRDAKVRRVRVHDLRHTCASLLLAQGVDA 370 Query: 305 HELMATYGWKTVDQA-ETYTKGA-DRIRLGIKNSRRISSVVDSDD 347 +M T G T+ +TY +R + + D DD Sbjct: 371 RTIMETLGHSTITMTLDTYAHVMGSTLRAAAEQMDDALGLEDVDD 415 >gi|169826684|ref|YP_001696842.1| hypothetical protein Bsph_1102 [Lysinibacillus sphaericus C3-41] gi|168991172|gb|ACA38712.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41] Length = 238 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 35/211 (16%), Positives = 75/211 (35%), Gaps = 10/211 (4%) Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 PSS + ++ LF+W+ + Y NP ++ PK + ++ +++ + Sbjct: 21 KPSSLGHRIRCVKSLFRWSHEEGYTLKNPAAKLKEPKLGKRIPKFLSEVEIEHLREACQT 80 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLAM 247 + + FEF+ +G R + + + + I K V L Sbjct: 81 -TMEKALFEFMYSTGCRIGEVVKLNREDIDFQSNSVIVQGKGDKEREVYFNTRCSIWLKR 139 Query: 248 T------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISAD 299 K++M+ K + +A + KS H +R AT + Sbjct: 140 YLDEREDREPCLFITDRRPKRRMSIDNLRYIIKRISNRASIKKSIHPHQLRHSYATHMIN 199 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIR 330 GA + + G + + + Y + + ++R Sbjct: 200 NGAPIDVIQSLLGHEKSETTKIYAQLSGKLR 230 >gi|88607956|ref|YP_506332.1| phage integrase family site specific recombinase [Neorickettsia sennetsu str. Miyayama] gi|88600125|gb|ABD45593.1| site-specific recombinase, phage integrase family [Neorickettsia sennetsu str. Miyayama] Length = 307 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 39/277 (14%), Positives = 86/277 (31%), Gaps = 31/277 (11%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD--------YRKITTKHIRSGVESR 126 + + + N+ +++ + F I +K +R+ + SR Sbjct: 16 WTRWLGGVKC--FSSNTLVAYSRDLMAFLDFLSTFRGEPVRFTSLDCIDSKDLRAWLASR 73 Query: 127 K---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM---- 179 + + + + L+S++ FK+ + + + L V + R T +++ Sbjct: 74 RKNSISFRTNARALSSVKSFFKYLAKHKGIINEDVLGVVLRFKPNTLPRSLTFKEIIELI 133 Query: 180 --QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237 F + L SGLR S++ V L N+ I + + L Sbjct: 134 EKFSFLKTSWIVKRNIALCYLLYGSGLRISEALSLTVADLTNSEIKIIGKGG-RERMIRL 192 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV----------NKSAH 287 L+ ++ + + +A + + + H Sbjct: 193 LPIVRVALSDYIASCPFQPDAGGFLFLDRNG-NKLCRTAVARAFLSIRRGFNLPDHITPH 251 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT G ++ G ++ E YTK Sbjct: 252 ALRHSFATHLLQEGVGVRKIQELLGHASLASTEVYTK 288 >gi|315604538|ref|ZP_07879601.1| tyrosine recombinase XerC [Actinomyces sp. oral taxon 180 str. F0310] gi|315313550|gb|EFU61604.1| tyrosine recombinase XerC [Actinomyces sp. oral taxon 180 str. F0310] Length = 303 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 46/294 (15%), Positives = 97/294 (32%), Gaps = 33/294 (11%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-------DFDYRKITTKHIRSG 122 ++ EY + ++ ++ ++ ++ +G +T + IRS Sbjct: 4 SVGDRWGEYLRH--GRGMSDHTIEAYLGDLRSLLSFAGLAWEASAAELAEALTQRRIRSW 61 Query: 123 VES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + R S+ + S+R WA R+ +A +P + P+ P + + Sbjct: 62 LADTLARGGARSTIARHTASVRHFTAWATREGILAHDPAALLTSPRADQRLPAPLDESEA 121 Query: 180 QQFKSFWSEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-G 230 + + + + E + GLR S++C + L +++ Sbjct: 122 RLLLNHARDEARGGGPSQLRNWAILELIYACGLRVSEACGLDISSLNREALTVRVTGKGN 181 Query: 231 TIITVELPDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKA 280 V L + F+ + +++ A A +A Sbjct: 182 KERVVPYGPPAADALDHWLLRGRALLAREGSGDALFLGDRGGRIDPRIVRSMVHAAAARA 241 Query: 281 GV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 GV + + HG+R +AT GA + G ++ + YT D RL Sbjct: 242 GVHDVAPHGLRHSTATHLLQGGADLRAVQEMLGHASLATTQRYTH-VDTARLSA 294 >gi|284006959|emb|CBA72231.1| phage integrase [Arsenophonus nasoniae] Length = 341 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 48/322 (14%), Positives = 98/322 (30%), Gaps = 17/322 (5%) Query: 15 RTRHGKIIYY-FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 + G+I +Y F + +RIR + ++AL T + Sbjct: 8 TYKRGEIWWYSFTTPNKQRIRKSAKTTNQQEAKELAALE-YNSYWRNEKLGDVSFHTWQE 66 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP--- 130 + + N + + + G I I ++++ + Sbjct: 67 AVLLWLNEK--PERKEN--RNMLYGLRWLDQYLGKTKLIDINKYLIDEIKKTKQISGVKN 122 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 + L +RV+ K A + P ++ K T IR T+ + ++ E Sbjct: 123 RTVNAVLQQIRVVLKCAYEHGLLDKIP--PIKLLKEPTRRIRWLTEYEEKRLMVELPEHL 180 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL---LAM 247 +P F L +GLR S+ + N + + + + Sbjct: 181 KP--IVNFALNTGLRMSNITNLKWSQVDINRRQAWIHADESKTNQAIGIPLNQAALTIIR 238 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHE 306 G ++ + + ++ +AG+ + H +R AT AG + Sbjct: 239 EQQGHHREYVFTYQGNRIKNAGAKGWRKAVYRAGLGDFHFHDLRHTWATRHIMAGTPLYV 298 Query: 307 LMATYGWKTVDQAETYTKGADR 328 L GW D Y + + Sbjct: 299 LQELGGWSKADTVRKYAHLSTQ 320 >gi|160876042|ref|YP_001555358.1| integrase family protein [Shewanella baltica OS195] gi|160861564|gb|ABX50098.1| integrase family protein [Shewanella baltica OS195] Length = 318 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 51/322 (15%), Positives = 99/322 (30%), Gaps = 31/322 (9%) Query: 15 RTRHGKIIYYFRK--GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 G R +G+R R T Y + ++++++P + L Sbjct: 4 TKVDGGYRVDIRPSGRNGKRYR-RTFETKTEATKYEKFILSQHHNKDWLDAPIDRRPLL- 61 Query: 73 WLISEYRKSAHWGSLAV--NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KH 128 LI + H +L N+R + + + G+ ++ T + R K Sbjct: 62 ELIDLWF-HFHGKNLKEGVNTRKNLITT----CKLMGNPQSHQVNTNFYLNYRARRLEKI 116 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 TP +A LT ++ ++ + A L P + + + + Sbjct: 117 TPKTANLELTRLQGVYSVLIAAGEFAGEHPLKSAPPIKLQAKDQSFLTKPQIAQLLALLS 176 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248 G L + L +G R S++ L ++ + K G T+ + F L Sbjct: 177 GEML-LIVKICLSTGARWSEAQNLTSSQLLDDRINFINTKNGKNRTIPITREFRAELPNG 235 Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK----SAHGVRKFSATISADAGATA 304 T + F A +G+ ++H +R A+ G Sbjct: 236 NGRLFTDCYHQ-------------FLAVLKSSGIELPKGQASHVLRHTFASHFVMNGGNI 282 Query: 305 HELMATYGWKTVDQAETYTKGA 326 L G ++ Y A Sbjct: 283 LTLQKILGHGSIQMTMRYAHLA 304 >gi|182417327|ref|ZP_02948665.1| tyrosine recombinase XerD [Clostridium butyricum 5521] gi|237668789|ref|ZP_04528773.1| phage integrase family protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378835|gb|EDT76354.1| tyrosine recombinase XerD [Clostridium butyricum 5521] gi|237657137|gb|EEP54693.1| phage integrase family protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 292 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 29/258 (11%), Positives = 81/258 (31%), Gaps = 20/258 (7%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVESRKHT 129 I+ Y+ + N+ ++ + ++ +T + ++ + Sbjct: 5 INNYKDYLLESGKSENTIYAYVTDVTLYLKFLNRKKVDIYKSDNLTVASYIQNLLNQGKS 64 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT----KEDMQQFKSF 185 S + + S+R + + Q + P + + K + + T + ++ + Sbjct: 65 ERSINRIVISLRNFYSYLKSQSLIQEVPKIEYKSSKNNRKLPQILTIEEVDKIIRIVEKD 124 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKL 244 +G + E + +G++ S+ V+ + + ++ + + K Sbjct: 125 CPKGIRDNALLELMYATGMKVSELINLNVEDVNLELNFVRCTDNKHYERIIPIGRSACKA 184 Query: 245 LAMTPIGKETFFINN--------DKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294 L+ + + K+ K + KAG++K + + R A Sbjct: 185 LSEYLSIRYKIAQCGVSNLFVNLNGNKLTRQGIWRIVKEYSRKAGIDKDVNLNTFRHSFA 244 Query: 295 TISADAGATAHELMATYG 312 GA + G Sbjct: 245 VHLLQNGANVRAVQKLLG 262 >gi|24371538|ref|NP_720278.1| Int [Enterobacteria phage ST64T] gi|24250765|gb|AAL15478.1| Int [Salmonella phage ST64T] Length = 387 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 49/375 (13%), Positives = 105/375 (28%), Gaps = 60/375 (16%) Query: 17 RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76 R F +G+R + A T + Sbjct: 6 RGETWYASFTLPNGKRFKQSL-GTKDKRQATELHDKLKAEAWRVSKLGETPDMTFEEACV 64 Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP------ 130 + + S +S ++ + IT I S ++ + Sbjct: 65 RWLEEKAHKK----SLDDDKSRIGFWLQHFAGMQLKDITETKIYSAIQKMTNRRHEENWK 120 Query: 131 -----------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167 ++ L+ ++ L + A +E+ ++ ++ P+ K Sbjct: 121 LMDEACRKNGKQPPVFKPKPAALATKATHLSFIKALLR-AAEREWKMLDKAPIIKVPQPK 179 Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFS 223 + IR + ++ E + EF L +GLR S+ Q + Sbjct: 180 NKRIRWLEPHEAKRLIDECPEPLKS--VVEFALSTGLRRSNIINLEWQQIDMQRKVAWIH 237 Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------------FSI 271 + K+ I V L D ++L + + + Sbjct: 238 PEQSKSNQAIGVALNDTACRVLKKQIGNHHKWVFVYKESSTKPDGTKSPVVRKMRYDANT 297 Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 +++ +AG+ + H +R A+ AG L GW++++ Y Sbjct: 298 AWRSALKRAGIEDFRFHDLRHTWASWLVQAGVPISVLQEMGGWESIEMVRRYAH------ 351 Query: 331 LGIKNSRRISSVVDS 345 L + + +DS Sbjct: 352 LAPNHLTEHARQIDS 366 >gi|21910802|ref|NP_665070.1| putative integrase - phage associated [Streptococcus pyogenes MGAS315] gi|28876380|ref|NP_795541.1| putative integrase [Streptococcus pyogenes phage 315.4] gi|28895509|ref|NP_801859.1| integrase (phage associated) [Streptococcus pyogenes SSI-1] gi|306828339|ref|ZP_07461592.1| DNA integration/recombination/inversion protein [Streptococcus pyogenes ATCC 10782] gi|21905006|gb|AAM79873.1| putative integrase - phage-associated [Streptococcus pyogenes phage 315.4] gi|28810758|dbj|BAC63692.1| putative integrase (phage associated) [Streptococcus pyogenes SSI-1] gi|304429470|gb|EFM32526.1| DNA integration/recombination/inversion protein [Streptococcus pyogenes ATCC 10782] Length = 384 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 47/371 (12%), Positives = 102/371 (27%), Gaps = 45/371 (12%) Query: 11 VTKERTRHGKIIYYFR------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64 + K + G Y R G+++R T A + + + Sbjct: 21 IEKYTKKDGTTAYRLRAYLGVDPVTGKQVRTTRQGFKTEREAKRAEVKLIDDFQRQGAWK 80 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNS----RISFESYFDQIIRKSGDFDYRKITTKHIR 120 TT + + + ++ ++ + +++ G KIT + Sbjct: 81 SNDKTTFDDVAKLWFEQYQ-NTVKPSTFLVNQNYYKTILK---PHLGQLQMTKITVMICQ 136 Query: 121 SGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 V +++ + +L+ +FK+AV + NP R K + + TK+ Sbjct: 137 KFVNCLSRYSGYTL--YLSLANRIFKFAVNLGIIDNNPMNKTLRSKCTYKNVDTLTKKYY 194 Query: 180 QQFKSFWS-------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN------------- 219 + + E + RL + L Y G R + Sbjct: 195 TKEELNTFLRLVEAEETLEMRLIYRLLSYGGFRIGELIALKDTDFDFRNNTISITKTIAY 254 Query: 220 ----NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275 K + + + + Sbjct: 255 TKEGWAVQSPKTKKSNRTISMDAETMSLAKLYIKQSIKPLHGSFKLFNFASDTVRKRLDR 314 Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGI 333 K G+ + + HG R A++ +AG A G + YT + + Sbjct: 315 FILKHGLKRITPHGFRHTHASLLFEAGIPAKIAQERLGHAKIAITMDLYTHLS--KKSKD 372 Query: 334 KNSRRISSVVD 344 + +++ +V Sbjct: 373 NVADKLAELVA 383 >gi|224024153|ref|ZP_03642519.1| hypothetical protein BACCOPRO_00876 [Bacteroides coprophilus DSM 18228] gi|224017375|gb|EEF75387.1| hypothetical protein BACCOPRO_00876 [Bacteroides coprophilus DSM 18228] Length = 418 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 45/288 (15%), Positives = 88/288 (30%), Gaps = 28/288 (9%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISF---ESYFDQIIR---KSGDFDYRKITTKHIRSGV 123 T+ L + + L ++ S+ + + DFD I + Sbjct: 110 TIDKLFDYFLAT-GGNKLRPSTLKSYTATRRHLAAFVMLRYHISDFDITAIDRNFVNEFY 168 Query: 124 ----------ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 R+ T + A++ + R L A E++A NP + +++ Sbjct: 169 AYLQGYLRQDNKRQCTENGALKHMQRFRKLLDMACSNEWIARNPADGMHW-EKRKTERGF 227 Query: 174 WTKEDMQQFKSFWSEG--SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 T+E++++ S R F F +Y+G D ++ I Sbjct: 228 LTEEELKRIADAQLTPALSVLRDIFLFSVYTGTSFVDMTMLTDNNIVVGIDHSLWLNFNR 287 Query: 232 IITVELP-----DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284 T + + +++L + + K A A V+K Sbjct: 288 TKTGQRCSIPLLEPALRILDRYENYRRASPQARLFPVPTNQVTNRDLKIIARAAHVDKNI 347 Query: 285 SAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 + H R AT G + G ++ + Y K D+ L Sbjct: 348 TFHVARHTFATTITLSNGIPLETVSRMLGHASIATTQIYAKIVDKKVL 395 >gi|323359719|ref|YP_004226115.1| integrase [Microbacterium testaceum StLB037] gi|323276090|dbj|BAJ76235.1| integrase [Microbacterium testaceum StLB037] Length = 301 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 40/291 (13%), Positives = 83/291 (28%), Gaps = 35/291 (12%) Query: 74 LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132 + L+ + ++ S + R +GD ++ + +R + Sbjct: 6 AAEAFLTHLATVRRLSPATVRAYRSDLADLARSTGDAPLDELDIEALRQWQWEATSAGRA 65 Query: 133 ---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ--------Q 181 A + ++ R WA + + ++P + PKR T + Sbjct: 66 KATAARRTSAARAFLSWAREEGLIEVDPSPRLVAPKRGRTLPVVATTSALDEVLAGAAAH 125 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDG 240 +S + E L SG R S+ C + + +++ + V Sbjct: 126 AESGEPVALRDHAILEVLYGSGARVSELCGLDLDDVDRESRTLRVRGKGDRERVVPYGVP 185 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN----------------- 283 + L + F A+ + G Sbjct: 186 AARALEAYVVRGRPVLSARGDGVAGPAVF---LGARGARLGPRAVHALVSRVVAPVVGAE 242 Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLG 332 H +R +AT D GA + G ++ + YT + +R+R Sbjct: 243 TLGPHALRHSAATHLLDGGADLRSVQEILGHASLGTTQIYTHVSGERLREA 293 >gi|260683666|ref|YP_003214951.1| integrase [Clostridium difficile CD196] gi|260687326|ref|YP_003218460.1| integrase [Clostridium difficile R20291] gi|260209829|emb|CBA63704.1| integrase [Clostridium difficile CD196] gi|260213343|emb|CBE04934.1| integrase [Clostridium difficile R20291] Length = 380 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 47/365 (12%), Positives = 109/365 (29%), Gaps = 38/365 (10%) Query: 13 KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 ++R ++ + F + + L T+ Sbjct: 16 RKRNKNYVVYLEFEDEKTGKRKQKNMGTFDKKREASKRLNEVKESLYNDGFLVPSEITVS 75 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT-- 129 + ++ ++++ + ++ S I G + + + HI++ ++ + Sbjct: 76 EFLLDFLNKYS-ENISLATYNNYVSICKNYINPSIGKYKIQDLHPVHIQNYIDKLSYKLN 134 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 P S + +++ K A R + + N S+E P+ K + +E M + + Sbjct: 135 PQSIKIHINILKLAIKRAYRLKLIKENVMDSIEAPRYKKFKNEIYDREQMIKLLDLA-KN 193 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------------I 233 ++ L + GLR S+ ++ +I K + Sbjct: 194 TEMELPINLAIGLGLRISEVLGLTWDNIDFEENTITVNKITSRINGSVILKEPKTESSVR 253 Query: 234 TVELPDGFMKLLAMTPIGKETF-------------FINNDKQKMNATQFSIWFKAKATKA 280 + P M LL I + F N + + S FK K Sbjct: 254 KISSPKELMSLLKEYKIKQNKNLLKSSIRNNNNLLFFNKKCEPIAEDVMSKKFKRFLEKN 313 Query: 281 GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRR 338 + H +R T+ ++ + G + Y+ + + S + Sbjct: 314 ELPHIRFHDLRHSHVTLLINSKVPIKVISERVGHSNISTTLSVYSHVL--KEMDKEASDK 371 Query: 339 ISSVV 343 IS + Sbjct: 372 ISESL 376 >gi|225018459|ref|ZP_03707651.1| hypothetical protein CLOSTMETH_02406 [Clostridium methylpentosum DSM 5476] gi|224948768|gb|EEG29977.1| hypothetical protein CLOSTMETH_02406 [Clostridium methylpentosum DSM 5476] Length = 329 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 45/316 (14%), Positives = 89/316 (28%), Gaps = 50/316 (15%) Query: 71 LKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRK-------------SGDFDYRKITT 116 L L +Y + + + R + I Sbjct: 7 LPKLARDYLLYLLTIKGRSQRTVDGYAIDLRTFFRFMKLHRGQVPADCVFEEILINDIDD 66 Query: 117 KHIR------------SGVESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVER 163 IR + SR + + + ++S+R FK+ V + + NP ++E Sbjct: 67 NFIRSVSLSDVYEFLNYTMRSRSNGAKTRARKVSSLRGFFKYLTVNTQLLTDNPVKNLEI 126 Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218 P K + E + S + L G+R S+ + Sbjct: 127 PAAKKSLPIHLSVEQSVKLLDEVGARSSGTQYRDYCILTLFLNCGMRLSELVGINLSSFD 186 Query: 219 NNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKETFFI-----------NNDKQKMNA 266 + ++K K V L + + + +++ A Sbjct: 187 RDSGALKLLGKGNKERLVYLNEACQDAIDNYLTKERGQLKTIVDKDALFLSCRSGKRLGA 246 Query: 267 TQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETY 322 Q + AG++ S H +R +AT+ G L G V E Y Sbjct: 247 RQVQLVVSGALKAAGLDHMGFSTHKLRHTAATLLYQEGNVDLLVLKEMLGHANVGTTEIY 306 Query: 323 TKGADRIRLGIKNSRR 338 T +++ + + + Sbjct: 307 THVSNKK--VQEAAAK 320 >gi|215447156|ref|ZP_03433908.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis T85] gi|289759014|ref|ZP_06518392.1| tyrosine recombinase XerC [Mycobacterium tuberculosis T85] gi|289714578|gb|EFD78590.1| tyrosine recombinase XerC [Mycobacterium tuberculosis T85] Length = 299 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 41/289 (14%), Positives = 95/289 (32%), Gaps = 28/289 (9%) Query: 73 WLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHT 129 ++ E+ + +V++R ++ + D +T +RS + + Sbjct: 3 AILDEFDEYLALQCGRSVHTRRAYLGDLRSLFAFLADRGSSLDALTLSVLRSWLAATAGA 62 Query: 130 PSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 ++ + ++++ WAVR+ +A +P ++ PK + ++ + + Sbjct: 63 GAARTTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQALRAMAAA 122 Query: 187 SEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-------------FSIK 225 G + RL E L +G+R S+ C V +++ S Sbjct: 123 ESGAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIEHRPSVGSGARQGQQEAHSTC 182 Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG-VNK 284 + + + L G ++ + + A G + Sbjct: 183 SGSQPPMRCTPGLVDGRRALVTAESGHALLLGARGRRLDVRQARTAVHQTVAAVDGAPDM 242 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 HG+R +AT + GA + G ++ + YT A + Sbjct: 243 GPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAV 291 >gi|322383343|ref|ZP_08057137.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321152377|gb|EFX45182.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 413 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 37/355 (10%), Positives = 103/355 (29%), Gaps = 57/355 (16%) Query: 46 AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS-LAVNSRISFESYFDQIIR 104 A + +K T + E+ + +++ + ++ Sbjct: 60 EAQEAAALLVAELSQGTYVEEKNNTFEEYAKEWLSEYQATGTVKISTVRIRKKGIKLLLP 119 Query: 105 KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM---RVLFKWAVRQEYVAINPCLSV 161 IT K + + S +++ R++F+ A+ + + +P S Sbjct: 120 YLAKLRISIITAKQYQHALLDLHDKGYSNNTIVSAHQTGRMIFQRAIELKIIKNDPTSSA 179 Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGS-----------QPRLAFEFLLYSGLRCSDSC 210 PKR+ T++++ ++ + F L Y+G+R + C Sbjct: 180 VIPKRQRTIEDLETEKEIPKYMEKEELALFLQTAKEKGLDRDYAIFLTLAYTGMRVGELC 239 Query: 211 RAGVQHLQN-------------------NIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251 + N + + + + + + L Sbjct: 240 ALKWSDIDFSEQTVSITKTYYNPNNNIKNYTLLTPKTKSSKRVIIVDKKVLDELEQLQAE 299 Query: 252 KETFFINNDK------------------QKMNATQFSIWFKAKATKAGV--NKSAHGVRK 291 ++ + K ++ AG+ + H +R Sbjct: 300 QKRIKMFFRKTYHDKNFVFSQQGEENAGFPTYPKLVALRMTRLLKLAGLNTKLTPHSLRH 359 Query: 292 FSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVVDS 345 ++ A+A + ++M G ++ + + Y + + S++ + ++ S Sbjct: 360 THTSLLAEARVSLEQIMQRLGHRSDETTKNIYLHVTKPKK--KEASQKFAELMSS 412 >gi|56414549|ref|YP_151624.1| integrase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197363479|ref|YP_002143116.1| integrase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56128806|gb|AAV78312.1| integrase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197094956|emb|CAR60493.1| integrase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 387 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 51/376 (13%), Positives = 108/376 (28%), Gaps = 61/376 (16%) Query: 17 RHGKIIYY-FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75 R G+ Y F +G+R + A T + Sbjct: 5 RRGETWYSSFTLPNGKRFKQSL-GTKDKRQATELHDKLKAEAWRVSKLGETPDMTFEEAC 63 Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP----- 130 + + S +S ++ + IT I S ++ + Sbjct: 64 VRWLEEKAHKK----SLDDDKSRIGFWLQHFAGMQLKDITETKIYSAIQKMTNRRHEENW 119 Query: 131 ------------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 ++ L+ ++ L + A +E+ ++ ++ P+ Sbjct: 120 KLMDEACRKNGKQPPVFKPKPAALATKATHLSFIKALLR-AAEREWKMLDKAPIIKVPQP 178 Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IF 222 K + IR + ++ E + EF L +GLR S+ Q + Sbjct: 179 KNKRIRWLEPHEAKRLIDECPEPLKS--VVEFALSTGLRRSNIINLEWQQIDMQRKVAWI 236 Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------------FS 270 + K+ I V L D ++L + + + Sbjct: 237 HPEQSKSNQAIGVALNDTACRVLKKQIGNHHKWVFVYKESSTKPDGTKSPVVRKMRYDAN 296 Query: 271 IWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +++ +AG+ + H +R A+ AG L GW++++ Y Sbjct: 297 TAWRSALKRAGIEDFRFHDLRHTWASWLVQAGVPISVLQEMGGWESIEMVRRYAH----- 351 Query: 330 RLGIKNSRRISSVVDS 345 L + + +DS Sbjct: 352 -LAPNHLTEHARQIDS 366 >gi|114764561|ref|ZP_01443765.1| probable site-specific integrase/recombinase [Pelagibaca bermudensis HTCC2601] gi|114542937|gb|EAU45957.1| probable site-specific integrase/recombinase [Roseovarius sp. HTCC2601] Length = 341 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 42/322 (13%), Positives = 97/322 (30%), Gaps = 14/322 (4%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 R R+GK R + + I+ T++ L Sbjct: 5 RNRNGKWHAQVRIKGHASQTKSFTTKRDAERWAKQTEAELQASALRIDIRVLDRVTVRDL 64 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSS 132 + YR+ S + + + D K+T + + R P + Sbjct: 65 LERYRREVTATKRGAASES--KRIDGFLRQTWVDRTLSKVTPQVFSRYRDERLRTVRPGT 122 Query: 133 AIQFLTSMRVLFKWAVRQE--YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--SE 188 I+ L +R +F+ A + + NP +V +PK R ++ + Sbjct: 123 VIRDLGLLRSIFEVARLEWDVPLQNNPLANVRKPKAPDPRERRLRPGELDLLLTACQSYR 182 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248 R + +G+R + + + ++ ++T +P + + + Sbjct: 183 NDWLRAGIVLAIETGMRRGEILSIRWCDVSMDTSTLTIRETKNGHARRIPLTAVAVDVLR 242 Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK------SAHGVRKFSATISADAGA 302 + + + ++A F ++ K + H +R + + + G Sbjct: 243 DMLEVCDDSSVRIFPVSANAFRQCWQRCKGKVAEDYKQIESLRFHDLRHEAVSRFFEMGL 302 Query: 303 TAHELMATYGWKTVDQAETYTK 324 + E+ G + YT Sbjct: 303 SVPEVALISGHRDPRMLFRYTH 324 >gi|23098689|ref|NP_692155.1| hypothetical protein OB1234 [Oceanobacillus iheyensis HTE831] gi|22776916|dbj|BAC13190.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 378 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 45/361 (12%), Positives = 108/361 (29%), Gaps = 50/361 (13%) Query: 11 VTKERTRHGKIIYYFRK------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64 + K T+ G I Y F ++ +L + L Y+ Sbjct: 5 IKKYDTKKG-IRYLFIIDINQSGKARKQKKLSGFTRKKDAEDALKKLIIELENDGYLEPS 63 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRK--SGDFDYRKITTKHIRS 121 ++ + + + + + + S+ + + + +I + ITT+ I Sbjct: 64 KE---SFQSFLQHWFYTHYITSIKRTTHSNRDYLIKKHLIEDNPFAEKAISDITTEEIDY 120 Query: 122 GVESRKHTPSS---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + S + + + F AV+ ++ NP ++ P+ +T+ + W+K+ Sbjct: 121 FYHYKLGKGYSTSYIRKMHQMLHLSFAQAVKWRKISYNPVVNTTPPRVQTKQVSIWSKDQ 180 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 ++QF + + + F +Y+G+R + + I + I + Sbjct: 181 VKQFLETSNLE-RLYILFLLAIYTGMRKGELLGLKWSDINMEKECIHIHRNLCYIQNQGY 239 Query: 239 D-------------------------------GFMKLLAMTPIGKETFFINNDKQKMNAT 267 +L + + + + Sbjct: 240 FFTTPKTVRSTRVIPISSLISDQLQCIKEKQQCEKELAGPSYEDNDLVICTALGKVQDPR 299 Query: 268 QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325 + F+ A V K H +R A+I G ++ + G + + Y Sbjct: 300 NVTRVFERCIKNANVPKIRFHDLRHTHASILISEGVDIVKVSSRMGHTSPKTTLDIYAHV 359 Query: 326 A 326 Sbjct: 360 V 360 >gi|150017497|ref|YP_001309751.1| phage integrase family protein [Clostridium beijerinckii NCIMB 8052] gi|149903962|gb|ABR34795.1| phage integrase family protein [Clostridium beijerinckii NCIMB 8052] Length = 325 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 42/324 (12%), Positives = 102/324 (31%), Gaps = 51/324 (15%) Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127 +LK ++ + + + + I + + +I G+ + H+ + + Sbjct: 1 MSLKTYLNMWLEDYVKEERSERTYIIYRDTMLKHVIPCIGNIKLSDLKVVHVEKYLRELR 60 Query: 128 ----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + S+ +++ AV+ + + NPC VE PK+ T E+ Sbjct: 61 KIKNNNGSTIQLNFRNLKTALNKAVKLQLLNDNPCRFVEMPKKNNFKGNYLTAEEFNLIY 120 Query: 184 S----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ------KTGTII 233 + GS R+ + + +G R + C +++ + +I + G I Sbjct: 121 NSLNAATYLGSSFRVLLDLAVETGCRRGEMCGTEWRNIDFDNKTITFDKALIKGEHGWKI 180 Query: 234 TVELPDGFMKLLA-------------------------------MTPIGKETFFINNDKQ 262 + + L I + I + + Sbjct: 181 GRLKTETSYRALPLSDDLINQLKKLRIKQLENKLTFGSEYHLNSFDGIEYDLICIQRNGK 240 Query: 263 KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA- 319 M K + ++K H +R SAT+ + G + G ++ Sbjct: 241 FMVPNDVRDRLKYLLKRNKIDKNIRWHDLRHTSATLLLENGVAMKTIQKRLGHASMSTTS 300 Query: 320 ETYTKGADRIRLGIKNSRRISSVV 343 + Y+ + ++ + + +S + Sbjct: 301 DIYSHVTE--KMDREATNILSRTI 322 >gi|254884996|ref|ZP_05257706.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|254837789|gb|EET18098.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] Length = 407 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 46/343 (13%), Positives = 90/343 (26%), Gaps = 32/343 (9%) Query: 23 YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY-INSPRKKPTTLKWLISEYRKS 81 Y K R + + + + Y S Sbjct: 74 YLIDKPRTPAERQQNKETLELATKIRAEREQEFKESMLGYRLKKDRTVNFLDYFQAYINS 133 Query: 82 AHWGSLAVNSRISFES---YFDQIIRKSGD-FDYRK--ITTKHIRSGVESRKHT------ 129 ++ + + + + I + I + + T Sbjct: 134 Y--------TKKDIRMVQIALSRFKDFLKEQYPMNEFSIKPELITKEMMEQFVTYLQSRS 185 Query: 130 -PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187 A + + ++A+ + + +PC SV + + Q + Sbjct: 186 VGEGAKSIYQRFKKVIRYAIDHDVMLKDPCKSVTCKVDSQMLRKDVLSPEEIQKLAACHY 245 Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL- 244 E R AF F LY GLR D +++ +K +++ T + L Sbjct: 246 DNENPNVRRAFIFCLYCGLRFCDVKDLTYKNVDYANRLLKFEQSKTKGHSASSGVVIPLN 305 Query: 245 --LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 L K +AG++K S H R A + Sbjct: 306 DGLLSIIGETPADKNCLIFDLPTYESCCKSVKRWVKRAGIDKHISWHCARHSFAVNILNN 365 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343 GA + + G + E YT+ D +L + + + Sbjct: 366 GANIKTVASLLGHSGLKHTEKYTRAVD--KLKEEAINSLPELK 406 >gi|225377965|ref|ZP_03755186.1| hypothetical protein ROSEINA2194_03625 [Roseburia inulinivorans DSM 16841] gi|225210216|gb|EEG92570.1| hypothetical protein ROSEINA2194_03625 [Roseburia inulinivorans DSM 16841] Length = 380 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 39/357 (10%), Positives = 90/357 (25%), Gaps = 52/357 (14%) Query: 17 RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76 + G F G+R + S L + E + TL Sbjct: 18 KDGLYQARFINRFGKRQTIYARTYSEITKK----LRDEQYEDEKQINVVNSNMTLNEWYE 73 Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136 + + + ++ ++ ++++ + G + I++ K + SS Sbjct: 74 VWLTTCK-KNCRDTTKRTYAIQYNRLREELGWRKISNLNLVIIQNAFNQLK-SDSSRGDC 131 Query: 137 LTSMRVLFKWAVRQEYVAINPCL--SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194 + + A+ + + N L + + ++ R T E++Q ++ S Sbjct: 132 KAVLVDILNRAMETDLINKNVALSVNTKIEGKEQTEKRVLTTEEIQL-LYQSAKDSSLYP 190 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQN--------------------NIFSIKTQKTGTIIT 234 F L +G+R + + + Sbjct: 191 FFILALNTGMRMGEILGLTWDCVDFENGIIHVEKTLCYLPNNGKAIYEFHPPKSKAGKRN 250 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQ--------------KMNATQFSIWFKAKATKA 280 + + ++L I E Q ++ + + Sbjct: 251 IPMSKQVKEVLQEQRIWHEDMTTRFQPQQGFEDLVFTSKTNRPIHESNIRSSIDYIVDRI 310 Query: 281 G--------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADR 328 + H +R AT G L G ++ Y D Sbjct: 311 NAQNPTEKFERFTPHCLRHTFATNCIAKGMRPKTLQKLLGHNSLQMTMDLYCHVLDE 367 >gi|239828409|ref|YP_002951033.1| integrase [Geobacillus sp. WCH70] gi|239808702|gb|ACS25767.1| integrase family protein [Geobacillus sp. WCH70] Length = 292 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 35/288 (12%), Positives = 87/288 (30%), Gaps = 26/288 (9%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF------DYRKITTKHIRSGVESR 126 L+ +++ A + S+ R G+ + + + + Sbjct: 3 ELLDAFKQWLTEEGKAPKTIESYVGDIKSYQRFLGEKAVSDQQPLSRFSFVRYKQHLLDE 62 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK--------ED 178 ++ + + S++V + ++ V+ + + G + Sbjct: 63 GFAVATINKKINSLKVYNDFLQKKGIVSESYIQLKRDRVQIAAGSEHVVTALSEEEVEKL 122 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVEL 237 + + + +L LLY+G+R S+ + + + + K G + + L Sbjct: 123 LFYLEDRTKVSLRNKLIAYLLLYTGVRVSELVNIKLTDIDVLTATLMIRGKGGKVREISL 182 Query: 238 PDGFMKLLAMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKAGVNKSAHG 288 ++L+ IG+ +KM+ W + G+ H Sbjct: 183 RQDLVQLIKEYQIGERQESRFRESEYLLVSQRSKKMHRDAVRNWLANISKDIGIKLHPHL 242 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAET-YTKGA-DRIRLGIK 334 R AT G + G TV+ Y + + + ++ Sbjct: 243 FRHTFATRLLRKGVDLTTVSKLTGHSTVNMTAKFYIQTTREEKKAAVE 290 >gi|149921212|ref|ZP_01909669.1| Phage integrase [Plesiocystis pacifica SIR-1] gi|149817983|gb|EDM77443.1| Phage integrase [Plesiocystis pacifica SIR-1] Length = 401 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 43/358 (12%), Positives = 95/358 (26%), Gaps = 44/358 (12%) Query: 25 FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT------------TLK 72 R ++ ++ AL T + ++P+K T TL+ Sbjct: 14 VRVRRVSPVQTRR-GAESYERKLRQALEAGTYGGKKASTPKKSSTRARKQPAPTGTPTLE 72 Query: 73 WLISEYR-KSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHI----------- 119 Y + +S + S I+ GD +I + H Sbjct: 73 QFAETYISEHCLVEQHRPSSITNTRSVLSAHILPILGDVAMDEIRSVHFGELKRAVARGR 132 Query: 120 -RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 G +S+ + + L + + ++ +E + + + E +E Sbjct: 133 GTRGRKSKPVSGKTINNALAVLSRMVRFWYEREGLMPPRIKAGLVRLDEPEADYYEPEEF 192 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--------- 229 G Q + + +G+R + ++ + + Sbjct: 193 EALVAGAAKAGLQELVIVLLMGDAGMRQGEIRALHWSDIRKHPEPTIRVQRTRFKADEYA 252 Query: 230 ---GTIITVELPDGFMKLLAM-TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285 ++ L + L I+ + + AG+ ++ Sbjct: 253 PKSKKGRSIPLSPRLVAALEALPRRRGCPHVIHEAGEPLTPKLVRGRIVRCERAAGMAET 312 Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 +H +R AT AG + G + + Y R + IS Sbjct: 313 GLSHKLRHTFATRLVAAGVPLLVIKELLGHADLRTTQRYLHTVSGAR--SQAIAAISG 368 >gi|160894098|ref|ZP_02074876.1| hypothetical protein CLOL250_01652 [Clostridium sp. L2-50] gi|156864131|gb|EDO57562.1| hypothetical protein CLOL250_01652 [Clostridium sp. L2-50] Length = 405 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 57/348 (16%), Positives = 98/348 (28%), Gaps = 37/348 (10%) Query: 18 HGKIIYYF----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 G F G +R + + + T+ Sbjct: 9 RGTWYVSFYYEDWTGAKKRKVKRGFRTKKEALNFEAEYKRTAKADM--------DMTMGE 60 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132 + Y + SL S + + Q++ D IT I + S Sbjct: 61 FVEVYFRD-KSQSLKDRSIKNKRDTMNAQLLPYFKDRPMNSITPAEIIQWQNTIIEKGYS 119 Query: 133 ---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERP-KRKTEGIRPWTKEDMQQFKSFWSE 188 M LF A +A NPC V+R K + ++ WT E+ +QF + Sbjct: 120 DDYLKTIQNQMTALFNHAKNIYNLADNPCDKVKRMGKTSKKKMKFWTIEEYRQFMTGIEP 179 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------------- 232 GS+ + FE L ++G R ++ + + KT Sbjct: 180 GSKYYVLFELLFWTGAREGEALSITPADIDFERNLLHINKTYYRMHGEDVITSPKTEESN 239 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRK 291 T+ +P+ K + + M K K GV K H +R Sbjct: 240 RTISIPEFLKKEIQDYISRLYELPEDERIFPMVHEAVQHKLKQVVQKTGVKKIRVHDIRH 299 Query: 292 FSATISADAGATAHELMATYGWKTVD-QAETYTK-GADRIRLGIKNSR 337 A + G + +G + TY D+ ++ Sbjct: 300 SHAAFLINKGVPPLMIKERFGHTDIRITLNTYGHLYPDQQKVVADMLD 347 >gi|320659984|gb|EFX27526.1| Phage integrase family protein [Escherichia coli O55:H7 str. USDA 5905] Length = 356 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 59/345 (17%), Positives = 108/345 (31%), Gaps = 23/345 (6%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALT---GSTPKREY 60 LPP + R+ Y G+ L A + + G K Sbjct: 9 RRDLPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLT 65 Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 TL + Y K + + I++ S I R D ITTK I Sbjct: 66 ARINSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIA 125 Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + + SA +++ F+ A+ + ++ NP + K + R E Sbjct: 126 AMLNGYIDEGKAVSAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEY 185 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 ++ +++ S RLA E + +G R D C + + ++ KTG I + Sbjct: 186 LKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTT 245 Query: 239 DGFMKLLAMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKAGV-----NK 284 L + ++ +++ S +F +G+ Sbjct: 246 LHVDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPP 305 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + H +R SA + + G K+ A Y R Sbjct: 306 TFHELRSLSA-RLYEKQISDKFAQHLLGHKSDTMASQYRDDRGRE 349 >gi|313105646|ref|ZP_07791910.1| putative bacteriophage integrase [Pseudomonas aeruginosa 39016] gi|310878412|gb|EFQ37006.1| putative bacteriophage integrase [Pseudomonas aeruginosa 39016] Length = 328 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 46/320 (14%), Positives = 92/320 (28%), Gaps = 24/320 (7%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 + G+ G+R R + + + + + P+ + L L Sbjct: 5 KLPDGRWFVDVEPIKGKRFRKRFKTKGEVQRFEATVRQRTIENSAWTPKPKDRRR-LSEL 63 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITT---KHIRSGVESRKH 128 + + L +S Q+ + GD + +R Sbjct: 64 VQLWY------DLHAHSLRDAPRRLSKPLQLAARLGDPIATALDASSYASLRRKRLEEGI 117 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYV-AINPCLSVERPKRKTEGIRPWTKEDMQQFK---S 184 + + L +R +F + NP V+ K + + T E + + Sbjct: 118 SGKTLNNELGYIRAVFNELKDLGQIDYDNPLAGVKLLKLQEGELSWLTTEQIGELLDSIR 177 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 + L L +G R S++ + Q LQ N+ + K+G + V +P Sbjct: 178 NRCDNPHTELVTLLCLATGARWSEAEKLPAQRLQGNVVTYAGTKSGKVRHVPIPAELADR 237 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATA 304 + F T F + + +++H +R A+ G Sbjct: 238 VRAHWPMHGPFTSCI-------TSFRRALERTTIQLPQGQASHALRHTFASHFMMNGGNI 290 Query: 305 HELMATYGWKTVDQAETYTK 324 L G T+ Y Sbjct: 291 LTLQKILGHSTLTMTMRYAH 310 >gi|310815561|ref|YP_003963525.1| phage integrase family protein [Ketogulonicigenium vulgare Y25] gi|308754296|gb|ADO42225.1| phage integrase family protein [Ketogulonicigenium vulgare Y25] Length = 313 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 40/297 (13%), Positives = 90/297 (30%), Gaps = 40/297 (13%) Query: 72 KWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVES 125 + IS + ++ A N+ +++ +T + Sbjct: 2 ERWISTFLEAQAAELGAARNTLLAYGRDLQDFAAWLARRKLDFLTLDQADIEDYLTFCAD 61 Query: 126 RKHTPSSAIQF------LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + +PS+ + L+++R LF++A + + NP + ++ + ++++ Sbjct: 62 QGLSPSTRARRPTRARRLSAVRQLFRFAFDEGWRTDNPSIRLKGATKARTLPETLNEDEV 121 Query: 180 QQFKSFWSEG--------SQPRLAFEFLLYSGLRCSDSC-----RAGVQHLQNNIFSIKT 226 + + E L +G+R S+ A + Sbjct: 122 DRLLDAARAASAARPREALRNTCLLELLYATGMRVSELVTLPVAAARGDPRMLLVRGKGG 181 Query: 227 QKTGTIITVELPDGFMKLLAMT------------PIGKETFFINNDKQKMNATQFSIWFK 274 ++ ++ ++ LA + F + + F + K Sbjct: 182 KERLVPLSPPARTAMVEWLAQRDTEQEALRKAGGQPSRFLFPSHGADGHLTRQHFLVILK 241 Query: 275 AKATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 A AG+ S H +R AT GA + G + E YT D+ Sbjct: 242 DLAVLAGISPARVSPHKLRHAFATHLLANGADLRAIQTMLGHADIATTEIYTHVLDQ 298 >gi|301048720|ref|ZP_07195729.1| site-specific recombinase, phage integrase family [Escherichia coli MS 185-1] gi|300299466|gb|EFJ55851.1| site-specific recombinase, phage integrase family [Escherichia coli MS 185-1] Length = 336 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 43/309 (13%), Positives = 92/309 (29%), Gaps = 27/309 (8%) Query: 26 RKGHGRRIRLPYPHESTF--IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83 R G+RIR + ++ Y A R TL L+ + K H Sbjct: 28 RGRDGKRIRRKFERKAEAVAFERYTIAYASQKE----WAGQRADRRTLSELLDIWWK-YH 82 Query: 84 WGSLAVNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGVESR---KHTPSSAIQFL 137 + ++ F+ +++ GD +++ + + R + ++ + + Sbjct: 83 GQNHEHGTKE-----FNHLLKTISGIGDIPVSRMSKRALMDYRSMRLRDGISAATINRDM 137 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197 + +F ++ + + + P E + K L Sbjct: 138 YRLSGMFTKLIQLDEFSGQHPI-HGLPPLAEANPEMTFLEKAEIEKLLNVLDGDDLLVAL 196 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI 257 L +G R ++ + N + K G TV ++ K Sbjct: 197 LCLSTGGRWTEVATLKPAQITNCRVTFLKTKNGKKRTVP--------ISEELEKKVKEEA 248 Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317 + K++ +F + N++ H +R A+ G L G ++ Sbjct: 249 SAKLFKVDYEKFCGILRRVKPDIPPNQATHILRHTFASHFMMNGGNIIALQQILGHASIQ 308 Query: 318 QAETYTKGA 326 Q Y A Sbjct: 309 QTMAYAHLA 317 >gi|99081533|ref|YP_613687.1| phage integrase [Ruegeria sp. TM1040] gi|99037813|gb|ABF64425.1| hypothetical protein TM1040_1692 [Ruegeria sp. TM1040] Length = 348 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 64/344 (18%), Positives = 117/344 (34%), Gaps = 10/344 (2%) Query: 2 TPSLRLPPFVTKERTRHGKIIYYFRKG---HGRRIRLPYPHESTFIPAYMSALTGSTPKR 58 P + P V K TR+ + Y R G+R + + + L Sbjct: 6 KPRIVKPGLVWKWDTRNSIWVPYHRVNWTEGGKRKQRTTKLDWRGDSERLDMLYWQCRAG 65 Query: 59 EYINSPRKKPTTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117 ++ T + LI+ +R+ LA ++ S+ + I+ K+ D D R+ T + Sbjct: 66 KHKKQTAPAKYTWRQLITAWREDPRVQSRLADGTKRSYSRTMEAILDKNSDKDVRRTTRQ 125 Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 IR+ TP A ++L ++ +L+ + + + P + + + Sbjct: 126 AIRTAHSKMSETPRKADKYLQTVSLLWNYGAEKLDWPLGPNPAKGIEHFGKQS--EYEPW 183 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237 R A E +L +G R + + H S+ +K+ I V Sbjct: 184 PEWMVDKLKDAPEHVRTAAELILGTGQRPNAAIHMKFAHFDGEWMSVLDEKSDERIDVYC 243 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSA 294 P + ++ P N + S F+ G HG+RK S Sbjct: 244 PPALREFISRAPRNGAYVLAKNLTEPRGYWSISSSFRTWRDALGPEAKKYVLHGLRKLSI 303 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338 A+AG + E+ A ++ + Y A R L R Sbjct: 304 IRLAEAGCSDAEIQAVTN-QSAEMVAYYRSRASRKALSRAAQER 346 >gi|92112109|gb|ABE73743.1| class 1 integron integrase [Azoarcus communis] Length = 337 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 35/303 (11%), Positives = 84/303 (27%), Gaps = 52/303 (17%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132 ++ + R+ + ++ + ++ + IR G + + + + + + S Sbjct: 16 VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 ++ L + + + + RP+ T +++ + + Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLTWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230 RL + L +G+R S+ + V+ L + +I ++ Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193 Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265 + + A + + M Sbjct: 194 RARDWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFLVFAQHTHSTDPRSGVVRRHHMY 253 Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 F FK +AG+ K + H +R AT +G + G V YT Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313 Query: 324 KGA 326 Sbjct: 314 HVL 316 >gi|325690779|gb|EGD32780.1| phage integrase family integrase/recombinase [Streptococcus sanguinis SK115] Length = 328 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 35/264 (13%), Positives = 77/264 (29%), Gaps = 14/264 (5%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESRK 127 + L+ + + + S + + + + R ITT +R RK Sbjct: 51 EKLLELFISAKRIEGCSEKSLKYYRMVIENMFTSL-NLTVRDITTSDLRTYLAHYQRERK 109 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + + F W ++++ +P + + K ++ E ++ + Sbjct: 110 SSKVTIDNMRRIFSSFFSWLEDEDFILKSPVRRIRKIKTDKTIKETFSDEGLELLRDACD 169 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKLLA 246 E + + L +G+R + R + + K + V L Sbjct: 170 E-IRDLAMIDLLASTGMRVGELVRLNREDINFYERECLVFGKGNSERIVYFDARTKIHLI 228 Query: 247 MTPIGKETFFINNDKQKMNAT------QFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299 ++ + + KA +NK H R+ AT + D Sbjct: 229 NYLDSRQDDNPALFVSLSSPHDRLLIGGVETRLRQLGEKADLNKVHPHKFRRTLATRAID 288 Query: 300 AGATAHELMATYGWKTVDQAETYT 323 G ++ G +D Y Sbjct: 289 KGMPIEQVQHLLGHVKIDTTMHYA 312 >gi|294085404|ref|YP_003552164.1| phage integrase family protein [Candidatus Puniceispirillum marinum IMCC1322] gi|292664979|gb|ADE40080.1| phage integrase family protein [Candidatus Puniceispirillum marinum IMCC1322] Length = 299 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 31/283 (10%), Positives = 84/283 (29%), Gaps = 27/283 (9%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT-------KHIRSGVE 124 + + N+ ++E+ D K+T+ + + + Sbjct: 7 RAAWLAWLAEEKRYGR--NTIDAYETDLDDYTSYLATQP-DKLTSSPNRTVFRGWIASMS 63 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 R ++ + ++++R ++A RQ + + + P+ + + +D Q + Sbjct: 64 GRDLARTTIARRVSALRSFLRFASRQNLLDVPDLSWLRAPRPPRTVPKSLSVDDAQALLA 123 Query: 185 F-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237 ++ L +GLR S++ Q + K + V + Sbjct: 124 AIFARRGDDWIKARDFAVLMLLYGAGLRISEALSLRRQDAPLGDWLSIMGKGNKMRDVPV 183 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQ-------FSIWFKAKATKAGVN--KSAHG 288 + + ++ +++ ++ + + + H Sbjct: 184 LRAAAQAVDEYIDLCPLALDSDKPLFVSSRGGALGARAVQRLVESLRVELDLPAHVTPHA 243 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +R AT G + G ++ + YT D L Sbjct: 244 LRHAFATHLLGNGGDLRAIQQLLGHVSLATTQLYTH-VDEAHL 285 >gi|41023639|emb|CAF18331.1| integrase/recombinase IntI1 [Morganella morganii subsp. morganii] Length = 320 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 35/303 (11%), Positives = 84/303 (27%), Gaps = 52/303 (17%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132 ++ + R+ + + + ++ ++ IR G + + + + + + S Sbjct: 16 VLDQLRERIRYLHYSSRTEQAYVNWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 ++ L + + + + RP+ T +++ + + Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230 RL + L +G+R S+ + V+ L + +I ++ Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193 Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265 + + A + + M Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253 Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 F FK +AG+ K + H +R AT +G + G V YT Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313 Query: 324 KGA 326 Sbjct: 314 HVL 316 >gi|42526683|ref|NP_971781.1| phage integrase family site specific recombinase [Treponema denticola ATCC 35405] gi|41816876|gb|AAS11662.1| site-specific recombinase, phage integrase family [Treponema denticola ATCC 35405] Length = 354 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 49/277 (17%), Positives = 93/277 (33%), Gaps = 19/277 (6%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH----TPSS 132 EY K+A + + ++I +T + ++ + +P + Sbjct: 75 EYVKNAAAEKNKKHPLHKVVLWIEKISPTL---KMDALTPTWFENFQQTLQRETELSPYT 131 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS---EG 189 + S+R LFK AVR + +P + V+ ED+++ + G Sbjct: 132 CENYACSLRTLFKKAVRDGVLVKDPTIGVKHIHCPESIKEFLMPEDIRKLAAEPIGGILG 191 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL----- 244 + + AF F +GLR SD + ++ + T V LP + Sbjct: 192 ADVKKAFLFACCTGLRISDLKSLKWGGVSFEKKTLTKIQQKTKRAVYLPIKDEAIAFLHL 251 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302 LA + T + + +AGV H R AT+ ++GA Sbjct: 252 LAEENPNRTDEDFIFPHVATTGTNMNQYLIEWGKRAGVRQKIGWHLARHTHATLLLESGA 311 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 + + G + YT+ DR + + + Sbjct: 312 DLYTVQKLLGHTKISTTAQYTQVTDRKK--KEAIDLL 346 >gi|257440124|ref|ZP_05615879.1| integrase/recombinase, phage integrase family [Faecalibacterium prausnitzii A2-165] gi|257197476|gb|EEU95760.1| integrase/recombinase, phage integrase family [Faecalibacterium prausnitzii A2-165] Length = 327 Score = 106 bits (264), Expect = 5e-21, Method: Composition-based stats. Identities = 36/293 (12%), Positives = 86/293 (29%), Gaps = 18/293 (6%) Query: 43 FIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI 102 A L G+T + + P ++ + + + + + + + + Sbjct: 25 LRDAMAETLEGATITYDSGSIPAEET----DAVEAFITAKRIEGCSEKTLSYYRKTIESL 80 Query: 103 IRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158 I G ++ITT +R R+ + + + F W ++++ +P Sbjct: 81 IAGVG-KAVQQITTDDLRRYLTNYQVQRRSSKVTIDNIRRILSSFFSWLEDEDFIVKSPV 139 Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218 + + K +T E ++ + + + + L SG+R + + + Sbjct: 140 RRIHKVKTAKVVKDTYTDEALELMRDNCTTA-RDLAMVDLLASSGMRVGELVTLNREDIN 198 Query: 219 NNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFI------NNDKQKMNATQFSI 271 N V L G+ ++ Sbjct: 199 FNERECVVIGKGNKERLVYFDARTKIHLQNYLEGRTDENPALFVSLKAPFDRLMIGGVET 258 Query: 272 WFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + + + K H R+ AT + D G ++ G + +D Y Sbjct: 259 RLRELGKRLNIPKVHPHKFRRTLATTAIDKGMPIEQVQQLLGHQKIDTTMHYA 311 >gi|241992592|gb|ACS73649.1| IntI1 [uncultured bacterium] Length = 337 Score = 106 bits (264), Expect = 5e-21, Method: Composition-based stats. Identities = 35/303 (11%), Positives = 84/303 (27%), Gaps = 52/303 (17%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132 ++ + R+ + ++ + ++ + IR G + + + + + + S Sbjct: 16 VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 ++ L + + + + RP+ T +++ + + Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230 RL + L +G+R S+ + V+ L + +I ++ Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193 Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265 + + A + + M Sbjct: 194 RARAWWLKDQAEGRSGVALPDALEREYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253 Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 F FK +AG+ K + H +R AT +G + G V YT Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313 Query: 324 KGA 326 Sbjct: 314 HVL 316 >gi|167463322|ref|ZP_02328411.1| integrase [Paenibacillus larvae subsp. larvae BRL-230010] Length = 407 Score = 106 bits (264), Expect = 5e-21, Method: Composition-based stats. Identities = 37/355 (10%), Positives = 103/355 (29%), Gaps = 57/355 (16%) Query: 46 AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS-LAVNSRISFESYFDQIIR 104 A + +K T + E+ + +++ + ++ Sbjct: 54 EAQEAAALLVAELSQGTYVEEKNNTFEEYAKEWLSEYQATGTVKISTVRIRKKGIKLLLP 113 Query: 105 KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM---RVLFKWAVRQEYVAINPCLSV 161 IT K + + S +++ R++F+ A+ + + +P S Sbjct: 114 YLAKLRISIITAKQYQHALLDLHDKGYSNNTIVSAHQTGRMIFQRAIELKIIKNDPTSSA 173 Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGS-----------QPRLAFEFLLYSGLRCSDSC 210 PKR+ T++++ ++ + F L Y+G+R + C Sbjct: 174 VIPKRQRTIEDLETEKEIPKYMEKEELALFLQTAKEKGLDRDYAIFLTLAYTGMRVGELC 233 Query: 211 RAGVQHLQN-------------------NIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251 + N + + + + + + L Sbjct: 234 ALKWSDIDFSEQTVSITKTYYNPNNNIKNYTLLTPKTKSSKRVIIVDKKVLDELEQLQAE 293 Query: 252 KETFFINNDK------------------QKMNATQFSIWFKAKATKAGV--NKSAHGVRK 291 ++ + K ++ AG+ + H +R Sbjct: 294 QKRIKMFFRKTYHDKNFVFSQQGEENAGFPTYPKLVALRMTRLLKLAGLNTKLTPHSLRH 353 Query: 292 FSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVVDS 345 ++ A+A + ++M G ++ + + Y + + S++ + ++ S Sbjct: 354 THTSLLAEARVSLEQIMQRLGHRSDETTKNIYLHVTKPKK--KEASQKFAELMSS 406 >gi|298243894|ref|ZP_06967701.1| integrase family protein [Ktedonobacter racemifer DSM 44963] gi|297556948|gb|EFH90812.1| integrase family protein [Ktedonobacter racemifer DSM 44963] Length = 385 Score = 106 bits (264), Expect = 5e-21, Method: Composition-based stats. Identities = 61/375 (16%), Positives = 119/375 (31%), Gaps = 48/375 (12%) Query: 17 RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76 + G+ Y R G++ +AL ++E LK + Sbjct: 16 KDGRFAGYIRLEGGKKKYFYGNTRKEVQDKVRAALN----EKERGTLATGPNPLLKDYLP 71 Query: 77 EYRKSA-HWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR---KHTPS 131 E+ ++ A + IS+ S +I + G R +T +HI++ + P+ Sbjct: 72 EWLETVCKPPYRAPQTYISYRSVISKHLIPEIGHLKIRNLTARHIQNLYTKKIREGAKPA 131 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 + Q + A++ E V+ N + K + I P T+E+ + G + Sbjct: 132 TIEQMQKVLSGSLNSALQWEMVSTNVASKITTLKGEQREILPLTEEEAKVLLETA-RGHR 190 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ-----------------NNIFSIKTQKTGTIIT 234 + GLR + +++ + + + Sbjct: 191 LEGMILLGVTLGLRLGEITALKWKNIDLDAHTLTVKLTVSHVPSMSHVEKDPKTRASRRK 250 Query: 235 VELPDGFMKLLAMT-----------------PIGKETFFINNDKQKMNATQFSIWFKAKA 277 ++LP+ ++ L K F+N + M A Q F A Sbjct: 251 IDLPNAVVQTLRQHYDEQKAEAEKMGLSLSEWNPKGLVFLNKRRGYMYAGQTRKEFYAIL 310 Query: 278 TKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKN 335 +AG+ K H +R +ATI G + G ++ Y+ +R + Sbjct: 311 AQAGLPKMHFHDLRHSAATILLVKGVHPKMVQELLGHSSIVMTMNIYSHVMPSMRKEVAG 370 Query: 336 SRR--ISSVVDSDDP 348 S + D P Sbjct: 371 IMDTIFSEKKEEDKP 385 >gi|291529887|emb|CBK95472.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3] Length = 327 Score = 106 bits (264), Expect = 5e-21, Method: Composition-based stats. Identities = 33/262 (12%), Positives = 79/262 (30%), Gaps = 14/262 (5%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESRKHT 129 L+ + + + + + + ++ G R I T +R E + + Sbjct: 52 LVELFLSAKRIEGCSEKTLKYYNATIQAMLTCVG-KGVRHIVTDDVRSYLTEYQEKNQSS 110 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + + F W ++Y+ +P + + K T +T E ++ + +E Sbjct: 111 KVTIDNIRRILSSFFSWLEDEDYILKSPVRRIHKVKTGTNIKETYTDEALELMRDSCTE- 169 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT 248 + + L +G+R + + N V L Sbjct: 170 LRDLAIIDMLASTGMRVGEMVLLNRADINFNERECVVFGKGDKERIVYFDARTKIHLQNY 229 Query: 249 PIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAG 301 + +++ + + + + G+ H R+ AT++ D G Sbjct: 230 LNSRRDENPALFVSLQKPHKRLQISGIEVRLREYGKRLGLSKVHPHKFRRTLATMAIDKG 289 Query: 302 ATAHELMATYGWKTVDQAETYT 323 +L G + +D Y Sbjct: 290 MPIEQLQQLLGHRRIDTTLQYA 311 >gi|284993087|ref|YP_003411641.1| integrase family protein [Geodermatophilus obscurus DSM 43160] gi|284066332|gb|ADB77270.1| integrase family protein [Geodermatophilus obscurus DSM 43160] Length = 404 Score = 106 bits (264), Expect = 5e-21, Method: Composition-based stats. Identities = 45/344 (13%), Positives = 102/344 (29%), Gaps = 40/344 (11%) Query: 30 GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAV 89 G+R + T A AL + + T+ ++ + + G Sbjct: 6 GKRSTMRRGGFPTKAAA-NRALADVANRTAQGVRVDDRE-TVASFLARWLQ-VKAGEAKP 62 Query: 90 NSRISFESYFDQ-IIRKSGDFDYRKITTKHIRS--GVESRKHTPSSAIQFLTSMRVLFKW 146 + S+ ++ ++ I+ G ++ +H+ + P + + ++R + Sbjct: 63 TTVRSYRAHVERVIVPAIGHVPIEELRAEHVEQLLVDAANGRGPVTVRRIHATLRSALSY 122 Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRC 206 V+ + N +V P ++PW+ ++ F E + FE + GLR Sbjct: 123 GVKTRRLPFNVASNVTPPNGIRPEVQPWSAAELAAFL-RHVETDRLGPLFEVIAACGLRR 181 Query: 207 SDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL---------------------- 244 ++ L + + ++T + L K Sbjct: 182 GEALGLRWSDLDLANRTARIRQTIVDVGGRLQFSTPKTRSSEATVPLTERAVQALLQVRL 241 Query: 245 --------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSAT 295 + F + + + F A AG+ H +R +A+ Sbjct: 242 GQDLDRQGWGGAYHAHDLVFARENGAPLRPEYATRRFVALTKAAGLRWVRLHDLRHGAAS 301 Query: 296 ISADAGATAHELMATYGWKTVD-QAETYTK-GADRIRLGIKNSR 337 + AG + ++ +TY D +R Sbjct: 302 LMLAAGVPMAIVSKVLRHSSIGITVDTYGHLSEDTVRTASDAMA 345 >gi|227485414|ref|ZP_03915730.1| integrase [Anaerococcus lactolyticus ATCC 51172] gi|227236544|gb|EEI86559.1| integrase [Anaerococcus lactolyticus ATCC 51172] Length = 380 Score = 106 bits (264), Expect = 5e-21, Method: Composition-based stats. Identities = 48/368 (13%), Positives = 111/368 (30%), Gaps = 45/368 (12%) Query: 1 MTPSLRLPPFVTKERTRHGKIIYY----FRKGHGRRIRLPYPHESTFIPAYMSALTGSTP 56 M ++P F R G ++ + G ++ T A Sbjct: 1 MQRRFKVPAF----RDESGNKTWFCKFNYTNWKGEKLTKKKRGFLTKKEALKWEQEFLNQ 56 Query: 57 KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKIT 115 E I + + Y++ + N+ + E+ +Q I+ GD +I Sbjct: 57 HSESI------EMSFREFFELYKRDRKPR-IRENTWRTKEAIVNQKILPYIGDLMLNEIN 109 Query: 116 TKHIRSGVESR---------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 I K++P+ + + A R + N V Sbjct: 110 NVTIIQWQNELMKIKDKNGKKYSPTYLRTIHAQLSSILNHACRYYNLKTNVARDVGSMGE 169 Query: 167 KT-EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225 K + + WT+++ ++F + + AFE L + GLR + + ++K Sbjct: 170 KEADEMLFWTQDEYERFIEAIKDKPESFYAFELLYWCGLRMGELLALTKEKFDFERHTLK 229 Query: 226 TQKTGTI----------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269 ++ T+ +P+ + + + + Sbjct: 230 IDESLQRIDGKNVITAPKTKKSIRTIVMPEFLTDEIKEYIESFYKLKPKDLIFNFSKSYL 289 Query: 270 SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG--A 326 + K+ V + H +R ++ + G +A + G +++D Y + Sbjct: 290 HHEMDRGSKKSQVKRIRIHDLRHSHVSLLIELGFSATAIADRVGHESIDITYRYAHLFPS 349 Query: 327 DRIRLGIK 334 + + + Sbjct: 350 KQKEMALS 357 >gi|148544647|ref|YP_001272017.1| phage integrase family protein [Lactobacillus reuteri DSM 20016] gi|184154000|ref|YP_001842341.1| integrase [Lactobacillus reuteri JCM 1112] gi|227365077|ref|ZP_03849107.1| phage integrase/recombinase [Lactobacillus reuteri MM2-3] gi|325682980|ref|ZP_08162496.1| phage integrase family integrase/recombinase [Lactobacillus reuteri MM4-1A] gi|148531681|gb|ABQ83680.1| phage integrase family protein [Lactobacillus reuteri DSM 20016] gi|183225344|dbj|BAG25861.1| integrase [Lactobacillus reuteri JCM 1112] gi|227069885|gb|EEI08278.1| phage integrase/recombinase [Lactobacillus reuteri MM2-3] gi|324977330|gb|EGC14281.1| phage integrase family integrase/recombinase [Lactobacillus reuteri MM4-1A] Length = 322 Score = 106 bits (264), Expect = 5e-21, Method: Composition-based stats. Identities = 34/274 (12%), Positives = 87/274 (31%), Gaps = 14/274 (5%) Query: 62 NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121 P+K+ + K ++++ ++ + + + +Q+++K R+ITT+ +R Sbjct: 35 REPQKRKISNKEYLAKFLEAKKMEGCSDRTIKYYRVTVEQLLKKV-VRPVRRITTEEMRE 93 Query: 122 GVESRK----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 + + ++ ++ F W ++Y+ +P + + + + T E Sbjct: 94 YLVDYQKINNCGKTTIDNIRRNISSFFSWLEEEDYILKSPMRRIHKIRAEKLVKNVITDE 153 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236 D+++ + + L +G+R + R + + V Sbjct: 154 DIEK-LRDGCSCLRDVAIIDLLYSTGIRVGELVRLNRTDINFSERECVVFGKGDKERRVY 212 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNAT------QFSIWFKAKATKAGVNK-SAHGV 289 L + I + K +++ H Sbjct: 213 FDAKSKVHLINYLRSRNDDNPALFVSLDKPNDRLKISGVEIRLRQLGRKLHLDRIHPHKF 272 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323 R+ AT + D G ++ G +D Y Sbjct: 273 RRSMATRAIDKGMPIEQVQKILGHSQIDTTMQYA 306 >gi|319654979|ref|ZP_08009052.1| hypothetical protein HMPREF1013_05674 [Bacillus sp. 2_A_57_CT2] gi|317393333|gb|EFV74098.1| hypothetical protein HMPREF1013_05674 [Bacillus sp. 2_A_57_CT2] Length = 258 Score = 106 bits (264), Expect = 5e-21, Method: Composition-based stats. Identities = 48/232 (20%), Positives = 88/232 (37%), Gaps = 11/232 (4%) Query: 102 IIRKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159 +I+ GD ITT+ I+ + SS + ++ LFKWA ++YV+INP Sbjct: 13 LIKYFGDIKITDITTESIKLYLGEVAAELKASSLCHRIRFIKSLFKWAQEEKYVSINPVS 72 Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219 S++ PK ++ + T+E+++ + + + + FEF+ +G R + + Sbjct: 73 SIKEPKPESRIPKFLTEEEIELLREAC-KTTFEKALFEFMYSTGYRIGEVVNLDKHSINM 131 Query: 220 -NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI-----NNDKQKMNATQFSIWF 273 I K V + L + +M+ Q Sbjct: 132 AEQSVIVFGKGKKEREVYINTRCSIWLKRYREERADDQQALFVTIRAPHRMSIAQMRYVI 191 Query: 274 KAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 K + +AG+NK H +R AT + GA + G + + Y Sbjct: 192 KQISKRAGINKCIYPHQLRHSYATTLINNGAPLEVIQNLMGHEKSETTRVYA 243 >gi|289423952|ref|ZP_06425745.1| phage integrase [Peptostreptococcus anaerobius 653-L] gi|289155729|gb|EFD04401.1| phage integrase [Peptostreptococcus anaerobius 653-L] Length = 343 Score = 106 bits (264), Expect = 5e-21, Method: Composition-based stats. Identities = 52/349 (14%), Positives = 101/349 (28%), Gaps = 34/349 (9%) Query: 16 TRHGKII---YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 + GK YY I+ ++ + S K TLK Sbjct: 7 KKTGKWRTLIYYKDYRGEPHIKQKRGFKTQ---------REAKEFERDFLSKFTKDITLK 57 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHT 129 EY L ++ + Y + + I+ K I + + Sbjct: 58 QAKEEYFDYISTR-LRESTVRNKRWYAKNL-EYIEHINLLNISPKTILDWQKHMQDIGKS 115 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + Q + +FK + NP ++E+ + + + WT ++ F + E Sbjct: 116 NKTINQSTEVLYGIFKHNCKMYSNTHNPVKAIEKLPTEKKEMDYWTLDEFNTFLG-FVED 174 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249 + LAF+ L Y G+R + + + + I + + Sbjct: 175 PEKSLAFKILFYGGIRYGELLGLQIGDIYDTYIDINKSYDYRSKKFCPTKNKQSVRQVVM 234 Query: 250 IGKETFFINND-------------KQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSAT 295 K I K T S K K ++K H +R AT Sbjct: 235 PDKIMDDIRAYISTLYKPGKKDRLFSKTTNTWLSRQLKVTCEKYNLHKIRVHDLRHSHAT 294 Query: 296 ISADAGATAHELMATYGWKTVDQA-ETYTKGA-DRIRLGIKNSRRISSV 342 + + G + G TY+ +R + +++++ Sbjct: 295 LLINNGIDVLIISHRLGHSNPTTTLNTYSHLYKNRSTEAVDLLNKLANL 343 >gi|229015108|ref|ZP_04172164.1| integrase/recombinase [Bacillus mycoides DSM 2048] gi|228746161|gb|EEL96108.1| integrase/recombinase [Bacillus mycoides DSM 2048] Length = 308 Score = 106 bits (264), Expect = 5e-21, Method: Composition-based stats. Identities = 41/286 (14%), Positives = 100/286 (34%), Gaps = 15/286 (5%) Query: 51 LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110 + + KK + + ++ K + +L + +++ F +K + Sbjct: 1 MKRRGELTDEELKIIKKKISDEEAYEKFFKDCYLRNLRPATIGYYKNEF-HGAKKIINKQ 59 Query: 111 YRKITTKHIRSGV--ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168 + K + + + ++ L ++R + + + + + NP +++ + + Sbjct: 60 LVEWEQKDVEDLILKSKQLMKVTTINTRLRALRSFYNFLDKHKLIDKNPMKNIKLLRDRQ 119 Query: 169 EGIRPWTKE-----DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223 + I + K G + + L +G+R S+ V+ +++N Sbjct: 120 KTIETLDNQEIEKLIKTIRKQKTFVGFRDEVILLVFLDTGVRLSELIGINVEDVRHNKLI 179 Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGK-----ETFFINNDKQKMNATQFSIWFKAKAT 278 I++ K TV L D + L + FI+ + ++++ Sbjct: 180 IRSTKNLFERTVYLSDTTQERLESYIKVRGEVATNKLFISQNNKELHPHSIQTRLTKYGK 239 Query: 279 KAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 +A ++K S H R A +G A LM G + + Y Sbjct: 240 EAKISKRVSPHTFRHTMAKRMIVSGLDAFSLMHLLGHTDITVTKRY 285 >gi|209883237|ref|YP_002287094.1| tyrosine recombinase XerD [Oligotropha carboxidovorans OM5] gi|209871433|gb|ACI91229.1| tyrosine recombinase XerD [Oligotropha carboxidovorans OM5] Length = 316 Score = 106 bits (264), Expect = 5e-21, Method: Composition-based stats. Identities = 45/293 (15%), Positives = 91/293 (31%), Gaps = 38/293 (12%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGV---ESRKH 128 I + N+ ++ S + + D+ + T+ +R + + R Sbjct: 10 IELFLDMLAAEQGAGDNTLNAYRSDLEDLSAFLAHAKTDFARADTQALRDYLADLDRRGF 69 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 SS + L+S R LF++ + + + +P + PKR + + D+ + E Sbjct: 70 KSSSVARRLSSTRHLFRFLLNERKRSDDPAAILAGPKRGRPLPKVLSIADVDRLLGKARE 129 Query: 189 -------------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIIT 234 + E L +GLR S+ + + + I + Sbjct: 130 FADQEQAPLQKLRAMRLWCLLEVLYATGLRVSELVALPLSAAKRDARMIVVRGKGDKERL 189 Query: 235 VELPDGFMKLLAMT---------------PIGKETFFINNDKQKMNATQFSIWFKAKATK 279 V L + + P K F + + + F+ K A Sbjct: 190 VPLNQSSREAMTAYLAATEAAKTDKTKSEPRSKWLFPSSGESGHLTRQHFARDLKELAMA 249 Query: 280 AGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 A ++ S H +R A+ GA + G + + YT + Sbjct: 250 AAISPRLISPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEER 302 >gi|240047536|ref|YP_002960924.1| Tyrosine recombinase xerC [Mycoplasma conjunctivae HRC/581] gi|239985108|emb|CAT05101.1| Tyrosine recombinase xerC [Mycoplasma conjunctivae] Length = 326 Score = 106 bits (264), Expect = 5e-21, Method: Composition-based stats. Identities = 32/264 (12%), Positives = 87/264 (32%), Gaps = 14/264 (5%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 + ++ + S + + + S D +++ + +I T +R+ + + ++ + Sbjct: 49 EKIVELFIGSKTLEGCSDKTIKYYISTIDSMVKSI-NKQINEIETNDLRNYLSNYQYKNN 107 Query: 132 ----SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + + F W + Y+ +P +++ K ++ E+++ + + Sbjct: 108 SSKVTIDNIRRILSSFFSWLEDENYIVKSPVRRIKKVKAPITVKETYSDEELEIMRDNVN 167 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLA 246 + + L +G+R + + ++ + N I K V L Sbjct: 168 -NYRDLALIDILASTGMRVGELVKLNIEDVDFNERECIVVGKGNKQRIVYFDARTKIHLK 226 Query: 247 MTPIGKETFFINND------KQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299 + + +++ + + K H R+ ATI+ D Sbjct: 227 KYLDSRVDKNKSLFVSLKLPYGRISINGIESRLRKIGKDLNIKKVHPHKFRRTLATIAID 286 Query: 300 AGATAHELMATYGWKTVDQAETYT 323 G ++ G + VD Y Sbjct: 287 KGMPIEQVQRLLGHEKVDTTLKYA 310 >gi|20065985|ref|NP_612851.1| putative integrase [Clostridium phage phi3626] gi|168211657|ref|ZP_02637282.1| phage integrase [Clostridium perfringens B str. ATCC 3626] gi|19908316|gb|AAL96792.1| putative integrase [Clostridium phage phi3626] gi|170710375|gb|EDT22557.1| phage integrase [Clostridium perfringens B str. ATCC 3626] Length = 349 Score = 106 bits (264), Expect = 5e-21, Method: Composition-based stats. Identities = 47/358 (13%), Positives = 101/358 (28%), Gaps = 38/358 (10%) Query: 12 TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 K + R G F + + Sbjct: 4 YKNKER-GTYYCSFYYKDWT----GKRKRKKKEGFKTKKEADKFEREFLVKVQENSDIDF 58 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 K L Y + A + + + + + +I+ D IT IR + K Sbjct: 59 KTLTEVYLEDAKIR-VRETTLENKKYLINLKILPYFKDKLISNITPNDIRQWQNTLK--- 114 Query: 131 SSAIQFLTSMR-------VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 S LT ++ +F + ++ + NPC +K + + + Sbjct: 115 -SMNYSLTYLKTINNQLTAIFNFGIKFYGLNTNPCHRAGSMGKKNADDMKFWTTEQFKTF 173 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------- 232 +++ +LAFE L ++G+R + + +I KT T Sbjct: 174 IEYNDKPISKLAFEVLFWTGMRSGELMALTFNDIDLKNKTININKTYTRLNGKDIINPPK 233 Query: 233 -----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SA 286 V +P+ + + ++ K K+ + Sbjct: 234 TPKSKRKVSIPNALCSYIETYITKLYDYNKSDRIFSFTKYFLVHEMKRVCKKSNIPIIRI 293 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVV 343 H +R A++ + G T + G + V +TY+ + ++ ++ Sbjct: 294 HDLRHSHASLLIELGFTPLLISERLGHEKVQTTLDTYSHLYPNKDTMVS--NKLDELI 349 >gi|7339576|emb|CAB82887.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 334 Score = 106 bits (264), Expect = 5e-21, Method: Composition-based stats. Identities = 35/303 (11%), Positives = 85/303 (28%), Gaps = 52/303 (17%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132 ++ + R+ + ++ + ++ ++ IR G + + + + + + S Sbjct: 16 VLDQLRERIRYLHYSLRTEQAYVNWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 ++ L + + + + RP+ T +++ + + Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230 RL + L +G+R S+ + V+ L + +I ++ Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPEAVAPSLREQLS 193 Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265 + + A + + M Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253 Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 F FK +AG+ K + H +R AT +G + G V YT Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313 Query: 324 KGA 326 Sbjct: 314 HVL 316 >gi|324006765|gb|EGB75984.1| site-specific recombinase, phage integrase family [Escherichia coli MS 57-2] Length = 326 Score = 106 bits (264), Expect = 5e-21, Method: Composition-based stats. Identities = 44/308 (14%), Positives = 100/308 (32%), Gaps = 25/308 (8%) Query: 26 RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85 R +G+RIR + + + + K+E++ + TL L+ + Sbjct: 18 RGRNGKRIR-RRFEKKQEAVLFERYVLANADKKEWLGASVD-RRTLSELLDTWWLLYGQ- 74 Query: 86 SLAVNSRIS---FESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTS 139 ++ + + + ++ IR GD ++ + I R + ++ + + Sbjct: 75 -----TQENGEIEKRHLNKTIRALGDPAVNRLNKRMIAQHRSQRLEDGISAATINRDIYR 129 Query: 140 MRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198 + +F ++ +E+ NPC +E K + K ++ + R Sbjct: 130 LSGMFSTLIKLEEFRKENPCKGLEPLKEAPPAMTYLAKSEISKLLDT--LTGDDRRVALL 187 Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN 258 L +G R + + + + + K G TV + + K + Sbjct: 188 CLSTGARWGEGSTLRGEQVNHGRVTFLKTKNGKKRTVPISEELEKEI--------KTSDT 239 Query: 259 NDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 K++ F + ++ H +R A+ G L G ++ Q Sbjct: 240 GPLFKVDYENFCERLRQVKPDLPRGQATHVLRHTFASWFMMNGGNIIALQQILGHASIQQ 299 Query: 319 AETYTKGA 326 Y A Sbjct: 300 TMVYAHLA 307 >gi|320173114|gb|EFW48332.1| Integrase [Shigella dysenteriae CDC 74-1112] Length = 375 Score = 106 bits (264), Expect = 5e-21, Method: Composition-based stats. Identities = 44/304 (14%), Positives = 90/304 (29%), Gaps = 18/304 (5%) Query: 28 GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87 G+RIR + Y + E+ + + L LI + K Sbjct: 69 RKGKRIR-KKFKTKSDAVLYERWVLAQQHNNEWKGNSIDRRP-LSVLIDLWWKYHGQLMK 126 Query: 88 A-VNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMRVL 143 + N+ ++ D K+ T + R + PS+ + + ++ + Sbjct: 127 SGHNT----RLKLLRLSEAMDDPCVHKLNTTMLTELRVSRIEQGIQPSTINREIGALSAM 182 Query: 144 FK-WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202 F ++ NP ++ K + +K + Q +E RLA E LL + Sbjct: 183 FTALISSGHFLNDNPVQGLKGMKVNEREMGYLSKSECVQLLDALAENPDERLAVEILLST 242 Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262 G R + + + + + K TV + + + + ++ Sbjct: 243 GARWGEVAALEQRRVLHCRITFSKTKNSKNRTVPISESLFEKIKKRGGKLVFPTLD---- 298 Query: 263 KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 + K A ++ H + A+ G L G + Y Sbjct: 299 ---YSLVRDVIKTVAPDVPDGQAVHALHHTFASHFMMNGGNILTLQKILGHAKIQTTMIY 355 Query: 323 TKGA 326 A Sbjct: 356 AHLA 359 >gi|313139852|ref|ZP_07802045.1| site-specific tyrosine recombinase XerC [Bifidobacterium bifidum NCIMB 41171] gi|313132362|gb|EFR49979.1| site-specific tyrosine recombinase XerC [Bifidobacterium bifidum NCIMB 41171] Length = 351 Score = 106 bits (264), Expect = 5e-21, Method: Composition-based stats. Identities = 47/311 (15%), Positives = 93/311 (29%), Gaps = 61/311 (19%) Query: 77 EYRKSAHW-GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGV--ESRKHTP 130 + L+ N+ ++ + + G D R++TT +R + E+R H Sbjct: 26 AFLAYLRANRGLSGNTVKAYGTDVRECLHALASRGIADLRQVTTDDLRGWMAFETRDHAR 85 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG- 189 SS + + S+R F WA + +P + PK T+ ++ + Sbjct: 86 SSMARKVVSVRSFFAWAHEHGRIEADPAAVLMTPKLPDTLPSVLTEAQAERLMDRVDDDA 145 Query: 190 -------------------------------------SQPRLAFEFLLYSGLRCSDSCRA 212 + E L +G+R ++ Sbjct: 146 SLHAASSQRYETRHDEMPRLDSAHRGEGMSQRDEVVALRDAAMLELLYATGIRVAELVGL 205 Query: 213 GVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFIN------------- 258 + + + +I+ V D K LA + Sbjct: 206 DIGDVDWSHRTIRVTGKGSKQRVVPFGDPAEKALAGWKEHGRPLILRRAGAGTLDTAALF 265 Query: 259 --NDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKT 315 ++++ A ++GV S H +R +AT D GA E+ G + Sbjct: 266 LGMRGRRIDQRIVRDVVHRAARESGVPDISPHSLRHSAATHMLDGGADLREVQEMLGHSS 325 Query: 316 VDQAETYTKGA 326 + + YT + Sbjct: 326 LRTTQRYTHVS 336 >gi|62362247|ref|YP_224172.1| gp34 [Enterobacteria phage ES18] gi|58339090|gb|AAW70505.1| gp34 [Enterobacteria phage ES18] Length = 387 Score = 106 bits (264), Expect = 5e-21, Method: Composition-based stats. Identities = 50/375 (13%), Positives = 103/375 (27%), Gaps = 60/375 (16%) Query: 17 RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76 R F G+R + A T + Sbjct: 6 RGETWYASFTLPDGKRFKQSL-GTKDKRQATELHDRLKAEAWRVSKLGETPDMTFEEACV 64 Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP------ 130 + + S +S ++ + IT I S ++ + Sbjct: 65 RWLEEKAHKK----SLDDDKSRIGFWLQHFAGIQLKDITETKIYSAIQKMTNRRHEENWK 120 Query: 131 -----------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167 ++ L+ ++ L + +E+ ++ V+ P+ K Sbjct: 121 MMEEACRKKGKQPPVFKPKPAAIATKATHLSFIKALLR-TAEREWKMLDKAPIVKVPQPK 179 Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFS 223 + IR + ++ E + EF L +GLR S+ Q + Sbjct: 180 NKRIRWLEPHEAKRLIDECPEPLKS--VVEFALSTGLRRSNIINLEWQQIDMQRKVAWIH 237 Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------------FSI 271 + K+ I V L D ++L + + + Sbjct: 238 PEQSKSNHAIGVALNDTACRVLKKQIGNHHKWVFVYKESSTKPDGTKSPVVRKMRYDANT 297 Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 ++A +AG+ + H +R A+ AG L GW++++ Y Sbjct: 298 AWRAALKRAGIEDFRFHDLRHTWASWLVQAGVPISVLQEMGGWESIEMVRRYAH------ 351 Query: 331 LGIKNSRRISSVVDS 345 L + + +DS Sbjct: 352 LAPNHLTEHARQIDS 366 >gi|71903947|ref|YP_280750.1| DNA integration/recombination/invertion protein [Streptococcus pyogenes phage 6180.2] gi|94990870|ref|YP_598970.1| DNA integration/recombination/inversion protein [Streptococcus phage 10270.3] gi|71803042|gb|AAX72395.1| DNA integration/recombination/invertion protein [Streptococcus pyogenes phage 6180.2] gi|94544378|gb|ABF34426.1| DNA integration/recombination/inversion protein [Streptococcus phage 10270.3] Length = 385 Score = 106 bits (264), Expect = 5e-21, Method: Composition-based stats. Identities = 47/371 (12%), Positives = 102/371 (27%), Gaps = 45/371 (12%) Query: 11 VTKERTRHGKIIYYFR------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64 + K + G Y R G+++R T A + + + Sbjct: 22 IEKYTKKDGTTAYRLRAYLGVDPVTGKQVRTTRQGFKTEREAKRAEVKLIDDFQRQGAWK 81 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNS----RISFESYFDQIIRKSGDFDYRKITTKHIR 120 TT + + + ++ ++ + +++ G KIT + Sbjct: 82 SNDKTTFDDVAKLWFEQYQ-NTVKPSTFLVNQNYYKTILK---PHLGQLQMTKITVMICQ 137 Query: 121 SGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 V +++ + +L+ +FK+AV + NP R K + + TK+ Sbjct: 138 KFVNCLSRYSGYTL--YLSLANRIFKFAVNLGIIDNNPMNKTLRSKCTYKNVDTLTKKYY 195 Query: 180 QQFKSFWS-------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN------------- 219 + + E + RL + L Y G R + Sbjct: 196 TKEELNTFLRLVEAEETLEMRLIYRLLSYGGFRIGELIALKDTDFDFRNNTISITKTIAY 255 Query: 220 ----NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275 K + + + + Sbjct: 256 TKEGWAVQSPKTKKSNRTISMDAETMSLAKLYIKQSIKPLHGSFKLFNFASDTVRKRLDR 315 Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGI 333 K G+ + + HG R A++ +AG A G + YT + + Sbjct: 316 FILKHGLKRITPHGFRHTHASLLFEAGIPAKIAQERLGHAKIAITMDLYTHLS--KKSKD 373 Query: 334 KNSRRISSVVD 344 + +++ +V Sbjct: 374 NVADKLAELVA 384 >gi|323703822|ref|ZP_08115459.1| integrase family protein [Desulfotomaculum nigrificans DSM 574] gi|323531237|gb|EGB21139.1| integrase family protein [Desulfotomaculum nigrificans DSM 574] Length = 304 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 38/285 (13%), Positives = 83/285 (29%), Gaps = 29/285 (10%) Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESR 126 T + L+ + +L+ S ++ ++ + +T R V Sbjct: 1 MTNQELVKSFLMYQETKNLSERSIEWYQRTLNKFLEYCEENKISITSMTVPQARGYVHWL 60 Query: 127 KHTPSS---------AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 ++ + F+ S++V+F + + EY+ NP V++ K I + + Sbjct: 61 QNATAKTGKKYADNGINGFIRSVKVMFNYLLEDEYIEKNPFAKVKQIKTDKVIIHTFEPQ 120 Query: 178 DMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--TGT 231 ++++ + + + L L GLR S++ + + IK Sbjct: 121 EVKKMLNQFNKSIYTDLRDALLIRILYDCGLRISEAINLKLTDIDTERNIIKVFGKGHKE 180 Query: 232 IITVELPDGFMKLLAMTPIGKE------TFFINNDKQKMNATQFSIWFKAK---ATKAGV 282 I ++L ++ ++ + KA + Sbjct: 181 RIVPFGRSVKREILKYLAKREKAISKDLDEGYLFSTRQGTPLMIRNVIRKIQTVGKKANI 240 Query: 283 N---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 S H R A G L G + Y Sbjct: 241 EGKRLSPHTFRHTFAKTYLMQGGDLFSLQQIMGHSDLSTTRQYVH 285 >gi|304360798|ref|YP_003856919.1| gp41 [Mycobacterium phage Angelica] gi|302858382|gb|ADL71130.1| gp41 [Mycobacterium phage Angelica] Length = 362 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 43/335 (12%), Positives = 87/335 (25%), Gaps = 31/335 (9%) Query: 17 RHGKIIYYFRKGHGRRIRLPYPHES----TFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 + G + + F + + TL Sbjct: 10 KDGSTYTSVLYRLNGKQTSTSFDDPVQAVEFKRMVEQLGAAKALEVIETTDAAARHYTLS 69 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGV---ESRKH 128 + Y + ++ +E I G +T I V R Sbjct: 70 EWLRHYLDHK--TGVEKSTIYDYEKVVAKDIDPALGPIPLAALTGDDIAKWVQALADRGL 127 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + + AVR + NP P+ + + T+E + + Sbjct: 128 KGKTISNKHGFLSSALNAAVRAGRIPGNPAAGARLPRTEKAEMVFLTREQYAKLHDNITL 187 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG-------- 240 QP + EFL+ SG R + + + +++ + + Sbjct: 188 PWQPLV--EFLVASGARWGEVVALRPSDVNRDASTVRISRASKRTYEKGSYALGAPKTLK 245 Query: 241 -------FMKLLAMTPIGKETFFINNDKQKMNATQFS-IWFKAKATKAGVNKSA--HGVR 290 +L E F N + F ++ +AG++ H +R Sbjct: 246 SRRTINVDASVLGKLDYSGEYLFTNTVGNPVRHNNFHANVWQPALKRAGLDVKPRVHDLR 305 Query: 291 KFSATISADAGATAHELMATYGWKTVD-QAETYTK 324 A+ AG + G +++ +TY Sbjct: 306 HTCASWLIAAGVPLPAIRDHLGHESIKITVDTYGH 340 >gi|295105622|emb|CBL03166.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii SL3/3] Length = 358 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 43/349 (12%), Positives = 98/349 (28%), Gaps = 42/349 (12%) Query: 7 LPPFVTKERTRHGKII---YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63 +P + + R G Y+ ++ +L + + + Sbjct: 1 MPAY---KDNRQGTWYASFYFENWQGVKQKKLKRGFATKKDALAW-------EREFLLQQ 50 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG 122 T + + Y L N+ E +I+ + +I + + + Sbjct: 51 AADLTMTFEAFVEIYITDKK-KRLRENTWSVKEHIIRTKILPYFKEKRLSEIKPRDVIAW 109 Query: 123 VESR---------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR- 172 ++P+ + + AVR + N + + Sbjct: 110 QNEMLNYRDKNGKAYSPTYLKTLHGQLSAILNHAVRFYGLKSNAAATAGCMGSEKHKEML 169 Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 WTKE+ +F + Q AFE L + G+R + + + K+ Sbjct: 170 FWTKEEYLKFAEVMMDKPQSYYAFEVLYWCGIREGELLALTPADFDLDKGLLSITKSYQR 229 Query: 233 ----------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK 276 +++P + + ++ + Sbjct: 230 LKGRDVITDPKTPKSVRVIQMPQFLTDEIRDYLKSLYKVQPDQRIFEVTKSYLHHEMDRG 289 Query: 277 ATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 A +AGV + H +R ++ + G +A + G ++VD Y Sbjct: 290 AKEAGVKRIRIHDLRHSHVSLLIEMGFSALAIADRVGHESVDITYKYAH 338 >gi|329964322|ref|ZP_08301403.1| site-specific recombinase, phage integrase family [Bacteroides fluxus YIT 12057] gi|328525371|gb|EGF52419.1| site-specific recombinase, phage integrase family [Bacteroides fluxus YIT 12057] Length = 412 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 41/300 (13%), Positives = 88/300 (29%), Gaps = 26/300 (8%) Query: 54 STPKREYINSPRKKPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKS-GDF 109 +T +E + TL L ++ + ++ + ++ +++ G F Sbjct: 96 ATAVKEAFQGSKDTRMTLFKLFDKHIEEIRARVGIDVSHRTLPNYLYTRNRLADFVSGRF 155 Query: 110 DYRKI-----TTKHIRSGVE----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 + + IR E + + +L ++ + + A ++ Y Sbjct: 156 KVSDLAFCQLNEQFIREFQEFVVIEKGLGVQTVRHYLAILKKICRIAFKEGYSDKYYFEH 215 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-----RLAFEFLLYSGLRCSDSCRAGVQ 215 + PK+K R +KED ++ + G +P R F F Y+G D Sbjct: 216 YKLPKQKETAPRALSKEDFEKIRDIELTGCRPEHSIVRDMFLFACYAGTSYVDVVAITPD 275 Query: 216 HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT---PIGKETFFINNDKQKMNATQFSIW 272 +L + K +KLL + Sbjct: 276 NLSRDDNGALWLKY--RRGKNGQLSRVKLLPEAVALIEKYRDETRATLFPVIPYQTLKWC 333 Query: 273 FKAKATKAGVNKSA--HGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + KA + H R +T+ + G + G + + Y + + Sbjct: 334 LTSIKIKADIKGRLSYHMGRHSFSTLMTLENGVPIETVSKMLGHADIRTTQVYARVTPKK 393 >gi|329118159|ref|ZP_08246871.1| site-specific tyrosine recombinase XerC [Neisseria bacilliformis ATCC BAA-1200] gi|327465819|gb|EGF12092.1| site-specific tyrosine recombinase XerC [Neisseria bacilliformis ATCC BAA-1200] Length = 308 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 46/271 (16%), Positives = 87/271 (32%), Gaps = 16/271 (5%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTPSSAI 134 EY ++ + ++ + Q+ + + + + + S Sbjct: 25 EYLETLRSEGRSPHTLAACRRDLAQLAKLLPEHAEPLSRHDFAAALKKLSQSGASERSMA 84 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFWSEGS 190 + L+ R + VR + NP ++ PK + E + + + Sbjct: 85 RKLSVWRRYADYLVRHGLLDANPAGRLKAPKLPQLLPKAVDAEPLNALFDRAACDDALDA 144 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249 + FE L SGLR +++ V + + K G V L +LA Sbjct: 145 RDLALFELLYGSGLRVAEAQALDVADVLIEEGWVGVRGKGGKHRQVPLTGQCATVLAAYL 204 Query: 250 IGK------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301 + F N +++ Q + A K G + S H +R A+ +G Sbjct: 205 PQRAAAAGETALFTNRLGRRLGIRQMQNRLRLWAVKNGSPQHISPHMLRHSYASHLLQSG 264 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLG 332 A + G + + YTK D RL Sbjct: 265 AGIRAIQELLGHSDLAATQIYTK-LDFARLA 294 >gi|261366946|ref|ZP_05979829.1| tyrosine recombinase XerC [Subdoligranulum variabile DSM 15176] gi|282571064|gb|EFB76599.1| tyrosine recombinase XerC [Subdoligranulum variabile DSM 15176] Length = 359 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 42/305 (13%), Positives = 87/305 (28%), Gaps = 42/305 (13%) Query: 72 KWLISEYRKSAHWGSL-AVNSRISFESYFDQIIRK----SG---------DFDYRKITTK 117 +I Y + L + + + R G + D KI +K Sbjct: 21 DDVIE-YLHYLDFVKLRSPRTVNGYYLDLRGFFRYMMIQWGRADATAKPEEIDLTKIDSK 79 Query: 118 HIRSGVESRKHT----PSSAI-------QFLTSMRVLFKWAVRQ-EYVAINPCLSVERPK 165 I + SA + L++++ F + Q + +P +V Sbjct: 80 DIAGIGKRDIFGYLDYARSANNGSKARARKLSALKGFFGYMCTQVNKITQDPTENVSLGA 139 Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFS 223 K + T+ + + + R L+ G+R ++ + +++ Sbjct: 140 PKKTLPKYLTESESLELLNNIQSDFYERDFCIITLFLNCGMRLAELVSIDLGDFRDDTIR 199 Query: 224 IKTQKTGTIITVELPDGFMKL---------LAMTPIGKETFFINNDKQKMNATQFSIWFK 274 I + + L L F +++ A + Sbjct: 200 ITGKGGKERLVYLNDACKQALERYAKVRGGLVNLSDKDALFVSKRTGKRLTARRVEQIVA 259 Query: 275 AKATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI-R 330 AG+ S H +R +AT+ G L G + V + YT + R Sbjct: 260 RCLQSAGLSGRGFSPHKLRHTAATLMYQGGVDMLALKEILGHENVSTTQIYTHINQQQLR 319 Query: 331 LGIKN 335 ++ Sbjct: 320 EAVQA 324 >gi|57234334|ref|YP_181609.1| phage integrase family site specific recombinase [Dehalococcoides ethenogenes 195] gi|57224782|gb|AAW39839.1| site-specific recombinase, phage integrase family [Dehalococcoides ethenogenes 195] Length = 435 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 50/343 (14%), Positives = 105/343 (30%), Gaps = 48/343 (13%) Query: 27 KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS 86 G R+ + L + ++ + + + + + Sbjct: 25 TGKRRQSWHTIKGTKKEADKKLRELLTAQDNGIFVKQSK---LSFGEWLENWCRDYVKIQ 81 Query: 87 LAVNSRISF-ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS-------SAIQFL- 137 + S+ ++ I G ++T + I++ + SA L Sbjct: 82 TTQRTFESYYQNIIGHIEPALGKVILTELTPQIIQAYYARQLEKGRADGKGGLSARSVLY 141 Query: 138 --TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195 + K A + + NP +VE P+ + I K+++ + + E + + Sbjct: 142 QHRIISKCLKQATKLGLIMRNPADAVEPPRPRKTAISVPDKDELPRLLDAF-ETTPYYVF 200 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNI----------------FSIKTQKTGTIITVELPD 239 + LLY G+R ++ + + + IK KT Sbjct: 201 YCLLLYCGMRRGEALALRWKDIDLKQDTIQIAETAFTLRSGEYVIKEPKTPHSRRCIDIP 260 Query: 240 GFMKLLAMTPIG---------------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284 MKLL + + F + + +N + F KAG +K Sbjct: 261 PTMKLLLLEYKADQTAYYAKLGVELGLHDFVFTRPNGEPLNPNTVTHTFLKAVRKAGFDK 320 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKG 325 H +R AT+ AG + G +++ +TY+ Sbjct: 321 LRLHDLRHLHATLMLQAGIHPKIVSERLGHASINITLDTYSHV 363 >gi|317126072|ref|YP_004100184.1| integrase [Intrasporangium calvum DSM 43043] gi|315590160|gb|ADU49457.1| integrase family protein [Intrasporangium calvum DSM 43043] Length = 374 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 40/327 (12%), Positives = 96/327 (29%), Gaps = 32/327 (9%) Query: 23 YYFRKGH-GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS 81 + R G R R ++ + + +Y++ PR + + + + Sbjct: 13 WQARWRDPGGRQRKKNFTRKVDAQRWLDQMQAERHRGQYVD-PRAGKVRVSEVAEGW--A 69 Query: 82 AHWGSLAVNSRISFES-YFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFL 137 L V++ + I+ + G + + +R V + + Q Sbjct: 70 RGLTHLKVSTATRYRGLMCGHILPRFGAWAVADLRHSDVRDWVNDLSASGLSAGTVRQAH 129 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197 + ++ +V+ +A N V+ P+ R +++ + + L+ Sbjct: 130 RVLSLILSESVKDGRIARNVAAGVQLPRAVRADPRFLDADEVARLIAGAGTNG---LSIA 186 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---ITVELPDGFMKLLAMTPIGKET 254 L + GLR + V+ + ++ T V + + T Sbjct: 187 VLAFCGLRFGELAALRVRRANVLRRRLVVAESVTEVGGRLVWSLPKTNRTRTVPFPPSLT 246 Query: 255 FFINNDKQKMNATQF----------------SIWFKAKATKAGV-NKSAHGVRKFSATIS 297 I + F AG+ + H +R +A+++ Sbjct: 247 PQIEALCRGKGPDDLLFTAPEGGALRLGNWRRRVFDPACRAAGLVGVTPHDLRHTAASLA 306 Query: 298 ADAGATAHELMATYGWKTVDQA-ETYT 323 +GA + G + + Y Sbjct: 307 IASGANVKAVQQMLGHASAAMTLDVYA 333 >gi|291287002|ref|YP_003503818.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809] gi|290884162|gb|ADD67862.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809] Length = 410 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 47/290 (16%), Positives = 90/290 (31%), Gaps = 28/290 (9%) Query: 65 RKKPTTLKWLISEYRKS----AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 RK T + E+++ G L + ++ + I+ ++ + IT + Sbjct: 80 RKSHKTFAEVAEEWKEHVERLHKAGELKRTTLRNYMNSLKSILDYFAIYEMQNITKSLVD 139 Query: 121 SGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 P S LT +R +F +A Y+ N V+ + I P+ + Sbjct: 140 DYKFELLDKPLSKKSINNKLTPLRRIFDYAYEMGYIEHNVMDRVKNFTLELPEIEPFNQL 199 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLY-SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---- 232 ++Q + + + A +L+ +G+R + ++ S ++ T Sbjct: 200 EVQAILNHLQKNNPKFHAMFTILFHTGMRIGEVLAMKWKNFDEMFCSYHVKEHFTEKRLD 259 Query: 233 --------ITVELPDGFMKLLAMTPIGKET------FFINNDKQKMNATQFSIWFKAKAT 278 V L D MK L D + ++ Sbjct: 260 TPKTKASKRIVPLTDEAMKALRNHKQYTFMKSDFIFCNQYGDPWVSSDNIMKQVWEPMLK 319 Query: 279 KAGVNKSA-HGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGA 326 K G+ + R A++S AG + G K V Y K Sbjct: 320 KLGIAYRIIYQCRHTHASLSILAGDNLAHIAERMGHKNVGTLITRYAKYV 369 >gi|300727851|ref|ZP_07061231.1| phage integrase family protein [Prevotella bryantii B14] gi|299774899|gb|EFI71511.1| phage integrase family protein [Prevotella bryantii B14] Length = 405 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 48/365 (13%), Positives = 111/365 (30%), Gaps = 43/365 (11%) Query: 11 VTKERTRHGKIIYYFRKGH-GRRIR-----LPYPHESTFIPAYMSALTGSTPKREYINSP 64 + ++ G Y H G+R R P S I Sbjct: 16 IREKVLSDGTSSLYLDIRHNGKRSREFLKLYLLPGSSRAIKEQNRQTMTKAETIRSERLI 75 Query: 65 RKKPTTLKWLISEYRKS------------AHWGSLAVNSRISFESYFDQIIRKSGD-FDY 111 + + ++ +Y+ + + + + + ++ S + + + Sbjct: 76 EIQKGSY-EVLQQYKTNTYFLPYYRKMCKERFRTDSQGTWGNWRSCLRYLEAYCDESTTF 134 Query: 112 RKITTKHIRSGVESRKH--------------------TPSSAIQFLTSMRVLFKWAVRQE 151 +IT + ++ + + + +S + ++ A + Sbjct: 135 SEITPEWVKGFKDFLDNVEKDSCKRKDREKVSVFNGLSLNSKHSYFNKLKACLNAAFEEH 194 Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCR 211 + +NP V+ K+ + E++ + + + AF F ++GLR SD R Sbjct: 195 IIVVNPLRGVKGFKQDEVAREHLSWEEVVKLDATPCRYPVLKNAFLFSCFTGLRKSDIER 254 Query: 212 AGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS 270 +Q + K E D + + +E K +N S Sbjct: 255 LTWGEVQKFDGFTRIVWKQKKTGGQEYLDIPEQAVKYLGTPQEEPDTPVFKGFLNGALLS 314 Query: 271 IWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 + + A +NK + H R A + + GA + + G + + + Y + D Sbjct: 315 LELRRWMLAASINKDITYHCSRHTFAVLMLNFGADIYTVSKMLGHREIATTQIYARVLDE 374 Query: 329 IRLGI 333 + Sbjct: 375 KKRAA 379 >gi|297516448|ref|ZP_06934834.1| Phage integrase family protein [Escherichia coli OP50] Length = 356 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 59/345 (17%), Positives = 108/345 (31%), Gaps = 23/345 (6%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALT---GSTPKREY 60 LPP + R+ Y G+ L A + + G K Sbjct: 9 RRDLPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLT 65 Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 TL + Y K + + I++ S I R D ITTK I Sbjct: 66 ARINSDNSVTLHSWLDRYEKILASREIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIA 125 Query: 121 SGVESRKHTP--SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + +SA +++ F+ A+ + ++ NP + K + R E Sbjct: 126 AMLNGYIDKGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEY 185 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 ++ +++ S RLA E + +G R D C + + ++ KTG I + Sbjct: 186 LKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTT 245 Query: 239 DGFMKLLAMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKAGV-----NK 284 L + ++ +++ S +F +G+ Sbjct: 246 LHVDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPP 305 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + H +R SA + + G K+ A Y R Sbjct: 306 TFHELRSLSA-RLYEKQISDKFAQHLLGHKSDTMASQYRDDRGRE 349 >gi|291551251|emb|CBL27513.1| Site-specific recombinase XerD [Ruminococcus torques L2-14] Length = 409 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 45/404 (11%), Positives = 100/404 (24%), Gaps = 78/404 (19%) Query: 1 MTPSLRLPPFVTKER----TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTP 56 M + V + + G Y F +++ + + T Sbjct: 1 MATKRKDKSRVVLKTGEVQRKDGT--YQFSWQD-SQMKRRFVYARTLDDLREKEKRIQKD 57 Query: 57 KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKIT 115 K + TT+ L + + L N+ +++ ++ G + Sbjct: 58 K-CDGIKTEARYTTIDELFDLW--ANMKRGLKNNTFENYKYMYNTFVRPVIGSKRISTLK 114 Query: 116 TKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS-----VERPKR 166 I+ + R PS+ T + + + AV +++ NP + + Sbjct: 115 KSDIKKYYNYLVDERNLKPSTIDNIHTVLHQVLQIAVDDDFIRNNPSDNVLRELKKAHCF 174 Query: 167 KTEGIRPWTKEDMQ---QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----- 218 ++E R TK + + F F ++ +GLR + + Sbjct: 175 QSEKRRALTKHEQELFLNFMKTHPVYEHWYPVFAVMIGTGLRVGEVTGLRWCDIDMESGM 234 Query: 219 --------------------NNIFSIKTQKTGTIITVELPDGFMKLLAMTPI-------- 250 T+ ++ V + + Sbjct: 235 IDVNHTLVYYDHRTEGSKSGCYFNVNTTKTLASMRQVPMLGFVREAFEQEKQKQEDLGLH 294 Query: 251 -------GKETFFINNDKQKMNATQFSIWFKAKATKAG--------------VNKSAHGV 289 + FIN Q + + + + S H + Sbjct: 295 CEVTIDGYTDFIFINRFGQAQHQATLNKAIRRIIRDCNDEQFLHSDEPDVLLPHFSCHSL 354 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLG 332 R T +AG + G + Y ++ Sbjct: 355 RHTFTTRMCEAGVNIKVIQDALGHSDISTTLNIYADVTKEMKAA 398 >gi|310766557|gb|ADP11507.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617] Length = 345 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 49/318 (15%), Positives = 96/318 (30%), Gaps = 35/318 (11%) Query: 51 LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRI-----SFESYFDQIIRK 105 L P P +L L+ + K + + + + + Sbjct: 11 LLTVDDIYRQPVGPAHDPKSLYALLLRFVKWRRERNWSETTLKVQTHHGYRFIC--WASE 68 Query: 106 SGDFDYRKITTKHIRSGVESRKH---------TPSSAIQFLTSMRVLFKWAVRQEYVAIN 156 G ++T + S +P + L ++V F+W +Q + N Sbjct: 69 RGIHHAAEVTRPVLESWQRHLWQYRKANGEPLSPRTQRTALQPLQVWFRWLAKQNLILAN 128 Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-----GSQPRLAFEFLLYSGLRCSDSCR 211 P +E P+++ R + + + G + R E L +G+R + R Sbjct: 129 PAADLELPRQEKHLPRTILSVEQVEGIVNLCDLNTLQGMRDRALLELLWSTGIRRGEVAR 188 Query: 212 AGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM----- 264 I +I K + + + + L + + K Sbjct: 189 LETYSADFSRKILTIVQGKGKQDRVIPVGERALWWLRHYLHKVRPEVLVSPDCKALFLAM 248 Query: 265 ------NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD 317 A + AG+ K S H R AT + GA + A G ++V+ Sbjct: 249 DGVAGLTANGITHAVVPYLRAAGIEKGSCHLFRHAMATQMLENGADLRWIQAMLGHRSVE 308 Query: 318 QAETYTKGADRIRLGIKN 335 + YT+ + R + Sbjct: 309 STQIYTQVSIRALQAVHA 326 >gi|167462689|ref|ZP_02327778.1| DNA integration/recombination/invertion protein [Paenibacillus larvae subsp. larvae BRL-230010] gi|322384964|ref|ZP_08058620.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321150261|gb|EFX43768.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 410 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 47/378 (12%), Positives = 114/378 (30%), Gaps = 58/378 (15%) Query: 26 RKGHGRRIRLPY----PHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI-SEYRK 80 R + +R+ + L + E + TL + E+ Sbjct: 26 RVKRTKTVRVEDQALIKTTKKLREFLETELHKFKIEVEAGEYIVPQKMTLDQFVQDEWIP 85 Query: 81 SAHWG--SLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH--------- 128 +L+ + ++ S+FD I G I T H+ + ++ Sbjct: 86 KYASKTENLSPLTFRNYVSHFDTHISPSLGHKHLGDIKTLHVVTFIDDLGKPGARKDGKE 145 Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + + ++ + + A + +NP + V++PK I + + + Q+ S Sbjct: 146 GRLSNGTIQYIYRVLKNILERAKEWGLIKVNPIIGVKKPKVGRPEIHFYDEVEAQEVISA 205 Query: 186 WSEGSQ-PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-----------------IKTQ 227 + + RL + G R + + + + + + Sbjct: 206 LDKEPRTWRLFILGSMIGGFRRGELLALEWTDVDFDNMTLSINKSISLTVDGHAVEKEPK 265 Query: 228 KTGTIITVELPDGFMKLLAMTPIGK----------------ETFFINNDKQKMNATQFSI 271 +I V++P+ +M L + + F + + T + Sbjct: 266 SKSSIRIVDMPEWYMDELKIHKHEWKKEKLFVGDKWRGGDKQYVFHAGFGKPLYHTYPTQ 325 Query: 272 WFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRI 329 W+ + + + H +R SAT+ +AGA+ + G Y Sbjct: 326 WWGEFIKRHNLKRVRFHDLRHSSATLLIEAGASMKAIQERLGHSKHQTTADIYAHIT--K 383 Query: 330 RLGIKNSRRISSVVDSDD 347 ++ + + + + Sbjct: 384 KVSRETAEKFDKFAPKNH 401 >gi|317497960|ref|ZP_07956267.1| phage integrase [Lachnospiraceae bacterium 5_1_63FAA] gi|316894759|gb|EFV16934.1| phage integrase [Lachnospiraceae bacterium 5_1_63FAA] Length = 361 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 28/309 (9%), Positives = 82/309 (26%), Gaps = 58/309 (18%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRK------- 127 +Y K A+N+ I++ + D+ Y +++ K I E Sbjct: 29 DYLKYQDQRDRAINTLIAYGNDLKAFWEFLSDYGYAYDEVSPKMIGEYKEYLMSEDDNII 88 Query: 128 -------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG---------- 170 T + + L+++ +++ + + + Sbjct: 89 AINKEGARTAKTINRMLSTLHGFYQYKADMQEIDNPLLMHEVNRPFNAFKGILEHARSDN 148 Query: 171 --------------IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216 +D + + + L ++ L +G R + ++ Sbjct: 149 KTKQSIFKVKESNYKINLVSDDEMELFLSRLDKRRDILLYKMLYLTGARIQEVLDLEIES 208 Query: 217 LQNNI------FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM------ 264 + + + G + +P ++ L + + Sbjct: 209 VPVPDMSQPVGCFQQIKSKGKTRDLYVPMSLIQELDDFIFEERNLIDTDHSYIFVSEQAR 268 Query: 265 ------NATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 + K + G++ + H +R + +G + G + + Sbjct: 269 QLGKQLTYSAAYDKLKKVQKEVGIDFNFHDLRHTFCSNLVQSGMDVSVVRMIMGHEHLST 328 Query: 319 AETYTKGAD 327 + YT ++ Sbjct: 329 TQKYTHLSN 337 >gi|311064016|ref|YP_003970741.1| integrase/recombinase [Bifidobacterium bifidum PRL2010] gi|310866335|gb|ADP35704.1| Integrase/recombinase [Bifidobacterium bifidum PRL2010] Length = 334 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 47/311 (15%), Positives = 93/311 (29%), Gaps = 61/311 (19%) Query: 77 EYRKSAHW-GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGV--ESRKHTP 130 + L+ N+ ++ + + G D R++TT +R + E+R H Sbjct: 9 AFLAYLRANRGLSDNTVKAYGTDVRECLHALASRGIADLRQVTTDDLRGWMAFETRDHAR 68 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG- 189 SS + + S+R F WA + +P + PK T+ ++ + Sbjct: 69 SSMARKVVSVRSFFAWAHEHGRIEADPAAVLMTPKLPDTLPSVLTEAQAERLMDRVDDDA 128 Query: 190 -------------------------------------SQPRLAFEFLLYSGLRCSDSCRA 212 + E L +G+R ++ Sbjct: 129 SLHAASSQRYETRHDEMPRLDSAHRGEGMSQRDEVVALRDAAMLELLYATGIRVAELVGL 188 Query: 213 GVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFIN------------- 258 + + + +I+ V D K LA + Sbjct: 189 DIGDVDWSHRTIRVTGKGSKQRVVPFGDPAEKALAGWKEHGRPLILRRAGAGTLDTAALF 248 Query: 259 --NDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKT 315 ++++ A ++GV S H +R +AT D GA E+ G + Sbjct: 249 LGMRGRRIDQRIVRDVVHRAARESGVPDISPHSLRHSAATHMLDGGADLREVQEMLGHSS 308 Query: 316 VDQAETYTKGA 326 + + YT + Sbjct: 309 LRTTQRYTHVS 319 >gi|303255271|ref|ZP_07341342.1| phage integrase family integrase/recombinase [Streptococcus pneumoniae BS455] gi|303260417|ref|ZP_07346386.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP-BS293] gi|303265063|ref|ZP_07350977.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae BS397] gi|302597740|gb|EFL64815.1| phage integrase family integrase/recombinase [Streptococcus pneumoniae BS455] gi|302638452|gb|EFL68918.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP-BS293] gi|302645423|gb|EFL75656.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae BS397] Length = 321 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 31/262 (11%), Positives = 78/262 (29%), Gaps = 14/262 (5%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESRKHT 129 L+ + + + + ++ + + ++TT +R + + + Sbjct: 46 LLQLFITAKQVEGCSSKTIRYYQRTIENLFNAI-KESVTQLTTDDLRSYLANYQSEKDCS 104 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 ++ + F W ++EY+ NP +++ K + +T E ++ + E Sbjct: 105 KANLDNIRRILSSFFAWLEQEEYIIKNPIRRIKKIKTEQNVKETYTDEHLEIMRD-NCEN 163 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT 248 + + L +G+R + + + V L Sbjct: 164 LRDLAIIDLLASTGMRVGELVQLNRSDIDFENRECVVFGKGKKERPVYFDARTKIHLRNY 223 Query: 249 PIGKETFFINNDK------QKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAG 301 ++ Q++ I + K + H R+ AT + D G Sbjct: 224 LNDRKDSHPALFVTLVGKVQRLGIAGVEIRLRKLGDKLSIQKVHPHKFRRTLATKAIDKG 283 Query: 302 ATAHELMATYGWKTVDQAETYT 323 ++ G +D Y Sbjct: 284 MPIEQVQKLLGHSKIDTTLAYA 305 >gi|237711592|ref|ZP_04542073.1| site-specific recombinase [Bacteroides sp. 9_1_42FAA] gi|229454287|gb|EEO60008.1| site-specific recombinase [Bacteroides sp. 9_1_42FAA] Length = 381 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 57/379 (15%), Positives = 101/379 (26%), Gaps = 40/379 (10%) Query: 2 TPSLRLPPFVTKERTRHGKIIYYFR-KGHGRRIR-------LPY--PHESTFIPAYMSAL 51 L+ P V ++ G YY G+R LP P A +A+ Sbjct: 7 PTRLKEPVKVRTKKLADGSESYYLDIYVDGKRSYEFLKLYLLPEINPMVKEQNRATKAAI 66 Query: 52 TGSTPKR---------EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI 102 KR + + L + Y + + Sbjct: 67 EAIKSKRIIELTHSKAGLKKTSVRSKMLLDDWMETYLAEQERKGARGG--KLLRTVCRLL 124 Query: 103 IRKSGDFDYRKITTKHIRSGVESRKH----------TPSSAIQFLTSMRVLFKWAVRQEY 152 +I + ++ +H +P SA ++ AVR E Sbjct: 125 PLYRKKVKMGEIDKEWCLGFIDWLQHTYKTRWGNPLSPKSAADYVGYFSTALNAAVRAEV 184 Query: 153 VAI---NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209 + ER K T ++++ + A+ F Y GLR SD Sbjct: 185 IPENPIMTLAPTERIKVPESKREYLTIDEIKALIDTECPREDVKRAYLFSCYCGLRLSDI 244 Query: 210 CRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT-- 267 + + + + T + + ++ Sbjct: 245 YALRWKDIFLDGEQYRVSTVMQKTTTPIYLPLSRHAVRWLPERDGEGDELKIFAGLPAEP 304 Query: 268 QFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 + A AG+ K + H R AT+ GA + G V + Y K Sbjct: 305 NINKVLAKWAVAAGITKKITYHTSRHSFATMMLTLGADLYTTSKLLGHSNVKTTQIYAKI 364 Query: 326 ADRIRLGIKNSRRISSVVD 344 D + ++ + SV D Sbjct: 365 VDSKK--VEAVNLVDSVFD 381 >gi|229551179|ref|ZP_04439904.1| phage integrase [Lactobacillus rhamnosus LMS2-1] gi|229315471|gb|EEN81444.1| phage integrase [Lactobacillus rhamnosus LMS2-1] Length = 385 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 52/379 (13%), Positives = 112/379 (29%), Gaps = 52/379 (13%) Query: 11 VTKERTRHGKIIYYFRK-------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63 + K T+ GK + + ++ ++ ++ +A + Sbjct: 4 IKKYATKDGKEFWRVQVFAGNDLQTGHKKYKVRRGFKTKKEATVAAARLELAISNGDLEE 63 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG 122 + KP + + E+ + ++ ++ F+ I+ G ITTK ++ Sbjct: 64 EKPKPVFFRDVYEEWYGNY-INTVRESTWARTAGMFNNHILPAFGGKRIATITTKDVQKA 122 Query: 123 VESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT----EGIRPWTKE 177 V+ + T ++ ++ + + +AVRQ Y++ NP ++ P + WTKE Sbjct: 123 VKRWFEFTSANYKRWYNYVSSVMDYAVRQGYMSKNPAKAIVLPHHDDLAGDKPENFWTKE 182 Query: 178 DMQQFKSFWSEGSQ--PRLAFEFLLYSGLRCSDSCRAGVQHLQN---------------- 219 M F + + + + F L ++G+R + + Sbjct: 183 QMNHFFACIDQENHFDVFIMFRVLAFTGVRRGELLALTWNDVSFKENSIKVNKTLTQGDK 242 Query: 220 -NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF--------- 269 + + T+ + M L ++ FI M Q Sbjct: 243 GHQIVQAPKTRAGRRTIPVDGQTMAYLKRWRRIQQETFIQLGINTMQPNQLLFTNTKNGY 302 Query: 270 ------SIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE- 320 S G+ + HG R + AG + G Sbjct: 303 QSLNTPSKRLHKLQDDNGLTPRITIHGFRHSFISNLLIAGVPVTSVQKLVGHTDPTITLG 362 Query: 321 TYTK-GADRIRLGIKNSRR 338 Y A + + Sbjct: 363 VYAHVSAKQESEATAALAK 381 >gi|227519604|ref|ZP_03949653.1| integrase family protein [Enterococcus faecalis TX0104] gi|227072954|gb|EEI10917.1| integrase family protein [Enterococcus faecalis TX0104] gi|315168777|gb|EFU12794.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX1341] Length = 376 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 49/375 (13%), Positives = 113/375 (30%), Gaps = 48/375 (12%) Query: 14 ERTRHGKIIYYFRKG-HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 ++ +GK Y R +G+ + T A +A + K ++ Sbjct: 5 KQQPNGKWRYRIRYKENGKFREVSKSGFRTKRDAQAAANELERKLNSGLVVQHNKDILVQ 64 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH--T 129 +S + K + ++ I+ + + +I + V + Sbjct: 65 EYLSSWIK-LKEKQVKKSTLAKLNRAIRLHILPQFAYYKITEIRRIDCINWVNEMCTHLS 123 Query: 130 PSSAIQFLTSMRVLFKWAVRQEY-VAINPCLSVERP----------KRKTEGIRPWTKED 178 SA + ++ + AV + NP +++ P + ++ Sbjct: 124 IESAKSYCSTFNSALEDAVNDFKLIDSNPMKNIKYPKTEKRKTAIQFFEKRELQNLLVTA 183 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--------------QNNIFSI 224 + Q + L +GLR ++ + + N F Sbjct: 184 ESYKGTKPFINYQYYVLTFLLARTGLRLGEALALKWEDVTEDKLTVSKTLYRENNQNFIT 243 Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT--------------QFS 270 + + T+ L ++LL I K + ++ +N + Sbjct: 244 TPKTISSYRTIILDKKCIELLKSFKIKKIEHSLKSNAFILNKEFVFTDSKGDFLKQCNYR 303 Query: 271 IWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADR 328 +F T A V K S H +R A ++G+ + G T++ Y + Sbjct: 304 TYFTTICTLADVPKLSPHALRHSHAVHLLESGSNIKFVSERLGHHTINMTANVYLHVS-- 361 Query: 329 IRLGIKNSRRISSVV 343 ++ ++ R + + Sbjct: 362 KKMETESISRYENFL 376 >gi|310766564|gb|ADP11514.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617] Length = 344 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 49/326 (15%), Positives = 98/326 (30%), Gaps = 35/326 (10%) Query: 55 TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRI-----SFESYFDQIIRKSGDF 109 P P +L L+ + K + + + + ++ G Sbjct: 15 DEVYRQPVGPAHDPKSLYALLLRFVKWRRERNWSETTLKVQTHHGYRFIC--WAQERGIH 72 Query: 110 DYRKITTKHIRSGVESRKH---------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 +T + +P + L ++V F+W +Q + NP Sbjct: 73 HAADVTRPVLERWQRHLWQYRKANGEPLSPRTQRTALQPLQVWFRWLAKQNLILANPAAD 132 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSE-----GSQPRLAFEFLLYSGLRCSDSCRAGVQ 215 +E P+ + R + + + G + R E L +G+R + R Sbjct: 133 LELPRLEKHLPRTILSVEQVEETVNLCDLTTLQGMRDRALLELLWSTGIRRGEVARLETW 192 Query: 216 --HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--------- 264 I +I K + + + + L + K Sbjct: 193 SADFSRKILTIVQGKGKQDRVIPVGERALWWLRHYLHEVRPEIVAVAGCKALFVAMDGVA 252 Query: 265 --NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321 A + AG+ K S H R AT + GA + A G ++V+ + Sbjct: 253 GLTANGITHAVVPYLRAAGIEKGSCHLFRHAMATQMLENGADLRWIQAMLGHRSVESTQI 312 Query: 322 YTKGADRIRLGIKNSRRISSVVDSDD 347 YT+ + R + S + ++D+ Sbjct: 313 YTQVSIRALQAVHASTHPAEQTEADN 338 >gi|215412737|ref|ZP_03421449.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis 94_M4241A] gi|298526363|ref|ZP_07013772.1| integrase/recombinase xerC [Mycobacterium tuberculosis 94_M4241A] gi|298496157|gb|EFI31451.1| integrase/recombinase xerC [Mycobacterium tuberculosis 94_M4241A] Length = 298 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 42/288 (14%), Positives = 94/288 (32%), Gaps = 27/288 (9%) Query: 73 WLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHT 129 ++ E+ + +V++R ++ + D +T +RS + + Sbjct: 3 AILDEFDEYLALQCGRSVHTRRAYLGDLRSLFAFLADRGSSLDALTLSVLRSWLAATAGA 62 Query: 130 PSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 ++ + ++++ WAVR+ +A +P ++ PK + ++ + + Sbjct: 63 GAARTTLARRTSAVKAFTAWAVRRVLLAGDPAARLQVPKVRRTLPAELRQDQALRAMAAA 122 Query: 187 SEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL 237 G + RL E L +G+R S+ C V + ++ K TV Sbjct: 123 ESGAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLGKGNKQRTVPF 182 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKM---NATQFSIWFKAKATKAG---------VNKS 285 L + + + A + + T + Sbjct: 183 GQPAADALHAWLVDGRRALVTAESGHALLLGARGRRLDVRQARTAVHQTVAAVDGAPDMG 242 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 HG+R +AT + GA + G ++ + YT A + Sbjct: 243 PHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAV 290 >gi|294782725|ref|ZP_06748051.1| integrase/recombinase, phage integrase family [Fusobacterium sp. 1_1_41FAA] gi|294481366|gb|EFG29141.1| integrase/recombinase, phage integrase family [Fusobacterium sp. 1_1_41FAA] Length = 323 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 35/264 (13%), Positives = 90/264 (34%), Gaps = 14/264 (5%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--- 128 + L + + + + + + S + +I K + +I T+ +R+ + + Sbjct: 46 EQLKKLFIDAKRLEGCSDKTILYYVSTIETMITKI-NKSIVEIETEDLRTYLSDYQINNN 104 Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + + + F W + Y+ +P +++ K + +T E+++ + Sbjct: 105 SSKVTIDNIRRILSSFFSWLENENYIIKSPVRRIKKVKAPSIVKETYTDEELETMRD-NV 163 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLA 246 E + + + L +G+R + + ++ + I K V L Sbjct: 164 EALRDLVLIDILASTGMRVGELVKLNIEDINFTERECIVLGKGNKERVVYFDARTKIHLK 223 Query: 247 MTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299 ++ +++ + + K G+ K H R+ ATI+ D Sbjct: 224 RYLENRKDNNKALLISLKAPCNRLSIAGVELRLRKIGEKLGIKKVHPHKFRRTLATIAID 283 Query: 300 AGATAHELMATYGWKTVDQAETYT 323 G ++ G + +D Y Sbjct: 284 KGMPIEQVQKLLGHEKIDTTLQYA 307 >gi|295105295|emb|CBL02839.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii SL3/3] Length = 341 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 35/287 (12%), Positives = 79/287 (27%), Gaps = 25/287 (8%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 + + + ++A ++ S++ + I I + ++ + Sbjct: 46 FEDWADTWFEGHK-DNIAPTTQESYKYCLKMLKEGFYHRPLTVIRPIDIENFLKGMRRDG 104 Query: 131 SS---AIQFLTSMRVLFKWAVRQEYVAINPCL-SVERPKRKTEGIRPWTKEDMQQFKSFW 186 S + + +F+ A + V NP + + T + Sbjct: 105 RSDSYISKARGMLYQIFQKAEANDLVRRNPVRLAEKMRASGTAKRKEAFTTAEVAHLMKV 164 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------------- 231 + L+ LL +G+R + Q ++ + I ++ Sbjct: 165 LPDDRMGLSIRLLLGTGMRMQELLALEPQFIEEDGSVIHIRQAVKVVKGTVSIGSPKSKD 224 Query: 232 ---IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286 I V L + + + N T F F+ +AG + + Sbjct: 225 SIRDIPVPLNVRPCAIKLRDTTDQFIWESPKTGLPCNPTHFRDVFRKSLEEAGDVRLLTP 284 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 H R + G + + G + E Y + IR Sbjct: 285 HSCRHTYVSQMQALGVDIQTIQSIVGHADTEMTEHYLHVQESIRQSA 331 >gi|291534558|emb|CBL07670.1| Site-specific recombinase XerD [Roseburia intestinalis M50/1] Length = 404 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 45/343 (13%), Positives = 107/343 (31%), Gaps = 24/343 (6%) Query: 3 PSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62 P R P+ + GK I +R+ L Y + Y++ S E N Sbjct: 52 PGHRRKPYAARIT--SGKTITASGNIAPKRVYLGYFRTAKEAQEYLNRYAHSEDPTEKTN 109 Query: 63 SPRKK------------PTTLKWLISE---YRKSAHWGSLAVNSRISFESYFDQIIRKSG 107 K T + E Y KS + + ++ + + ++ + Sbjct: 110 VSEKTLEYQKTNASVKYSPTFSNVYGETIEYLKSRK-RNYSDSTYKALNAAYNNLSS-LH 167 Query: 108 DFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 + +R I + ++ + + SS ++ ++ A++Q+YV + + Sbjct: 168 SYKFRNIDYQLLQEAISKNDTLSKSSLNNIRNLLKKMYTLALKQKYVTDDISKLCDYDYT 227 Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---NNIFS 223 + + + S + LLY+G+R + +++ + Sbjct: 228 TVSDEKHHPFTHDEINLIRNTSPSPEKDMVLILLYTGIRAEEFLILENKNIHLDDQYFIT 287 Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 G + + + + ++ K+ +F + + + F + ++ Sbjct: 288 GVKTDAGKSRIIPIHNDILPIIQKYYNPKKHYFWDFNGSQRIYQTLRWRFDRLMKQLNID 347 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKG 325 H R +AT +A + G D + Y Sbjct: 348 HIPHDTRHTTATAMHNANLDIMYIKLILGHHINDITQRVYIHS 390 >gi|187932470|ref|YP_001884285.1| DNA integration/recombination/invertion protein [Clostridium botulinum B str. Eklund 17B] gi|187720623|gb|ACD21844.1| site-specific recombinase, phage integrase family [Clostridium botulinum B str. Eklund 17B] Length = 384 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 46/354 (12%), Positives = 103/354 (29%), Gaps = 52/354 (14%) Query: 27 KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS 86 +G++++ T A + K + + K I+++ + Sbjct: 20 YENGKQVKTRKQGFKTKKDAEIWVTDTLGKKHKGYIALTNSNILFKDYINKWFNEYKVLN 79 Query: 87 LAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR----KHTPSSAIQFLTSMR 141 +++N++ + + ++ G++ +++T I+ P SA + + Sbjct: 80 VSINTKNDYIYRINAHVVPMIGNYKLSELSTSIIQDFYNKLISEKGMKPVSAKKVYDIVN 139 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201 K+A + + + P ++ K I WTK+++ F + + Sbjct: 140 GCLKYAKKSKLIYDLPTDIEKQ-KLVKPEIEFWTKKEIDFFLDKIN-DLYLYSPVFLDVL 197 Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261 +GLR + C + I+ + F +L + + Sbjct: 198 TGLRVGELCGLRWCDVNLESGYIEVNSQVIQDRINKELIFSSILKTSTSHRNISIPPVLI 257 Query: 262 Q------------------------KMNATQFSIWFKAKATKAG-----VNK-------- 284 N S+ F K + K Sbjct: 258 DFLKAMKEDNNALENDFVILSREGLMCNPRNLSMNFTKTVAKYKKSIDDIEKENKEVPKD 317 Query: 285 -------SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIR 330 S HG+R AT+ G + G + + TYT D ++ Sbjct: 318 YMQLKQISFHGLRHTHATLLIFNGENIKVVSDRLGHRDISITLNTYTHIMDDMK 371 >gi|150402804|ref|YP_001330098.1| phage integrase family protein [Methanococcus maripaludis C7] gi|150033834|gb|ABR65947.1| phage integrase family protein [Methanococcus maripaludis C7] Length = 291 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 39/264 (14%), Positives = 87/264 (32%), Gaps = 14/264 (5%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 + +E+ K SL+ N + ++ + + + ++ + ++ Sbjct: 16 IFNEFFKYIQHKSLSYN--KNLKNIILNFMEFIKKDSFMNVEVSDAIFYYNNKSCSKNTK 73 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193 + +LT + V F + V Y+A NP + + ++ R + E Q+ + + R Sbjct: 74 LSYLTYLNVFFDFCVDNNYIAKNPISKYRKSMKPSKKERVYLTEKHQELVFSRLKDFEFR 133 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251 + FL+ +GLR + + + I +K K V + D L Sbjct: 134 FMYVFLVQTGLRRGEFLNLKFIDVDLDDRIIHVKGGKGDKYRFVPISDELYMYLKRWNYE 193 Query: 252 KETFFINNDKQKMNAT----------QFSIWFKAKATKAGVNKSAHGVRKFSATISADAG 301 + + +D ++ FS + + + H +R AT + Sbjct: 194 RALRYPVDDSYFVSKKGKRQSNKIYASFSEYIDRAVPNLHIRVTPHILRHTFATNCINKK 253 Query: 302 ATAHELMATYGWKTVDQAETYTKG 325 L G + + Y Sbjct: 254 MDLKTLSLILGHEDIATTSIYLHK 277 >gi|284991405|ref|YP_003409959.1| integrase family protein [Geodermatophilus obscurus DSM 43160] gi|284064650|gb|ADB75588.1| integrase family protein [Geodermatophilus obscurus DSM 43160] Length = 377 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 47/368 (12%), Positives = 115/368 (31%), Gaps = 44/368 (11%) Query: 15 RTRHGKII--YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 + +G+ +R G R + + L + E + T+ Sbjct: 13 KRANGRWYSALTYRDDFGEVKRREVSGRTQ--AEVRAKLRELRERVEAGAPVKDASITMA 70 Query: 73 WLISEYR-KSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH-- 128 + ++ K+ + + + ++ K G ++ ++ + V +++ Sbjct: 71 AWLEDWTTKALPASDRKQATIDLYATIARSHLVPKLGSLPLDRLRPSNVEALVLAKRRAG 130 Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + SS +R AVR + NP V+RP + + + + + Sbjct: 131 LSASSVRTIYAVLRAALDVAVRDGLIQRNPAALVKRPAVERKDAGYLSAQQAEALLEAV- 189 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----------------TQKTGT 231 G + + +L +GLR ++ + + + ++ + + Sbjct: 190 RGDRLEALYRVMLATGLRRGEALALHWRDVDLDAAVVRVRWTLSRTSAGLELGEPKTEKS 249 Query: 232 IITVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKAKA 277 TV LP ++ L F + + F+A A Sbjct: 250 RRTVPLPVPAVETLRAHRKRQAAEQLAAGSLWQASGLVFTSEIGTPLEPRNVLRRFEALA 309 Query: 278 TKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGIKN 335 +AG+ H +R +A+ AG + G + A+ Y+ A + + Sbjct: 310 ERAGLRGVHLHTLRHSAASFLLAAGTHTKVVQEHLGHSSYAITADIYSHVAPAQQR--EA 367 Query: 336 SRRISSVV 343 + ++ + Sbjct: 368 ADKLGQAI 375 >gi|120602532|ref|YP_966932.1| phage integrase family protein [Desulfovibrio vulgaris DP4] gi|120562761|gb|ABM28505.1| phage integrase family protein [Desulfovibrio vulgaris DP4] Length = 342 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 37/322 (11%), Positives = 97/322 (30%), Gaps = 13/322 (4%) Query: 16 TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT--TLKW 73 ++G ++R + R Y ++ L Sbjct: 6 KKNGTWFVHYRVSGEKNPRQEYFGVGDEAKKKAQIRDAEIKLQKASGQRPVPSNGEYLDT 65 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESRK--HTP 130 + Y + ++ + + I + + V+ + Sbjct: 66 VAQAYVTDRKLAGASAKWLAEISWLLNKFVLPELTKAPIDDIRYPDVIAFVDRQWGDRAL 125 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 ++ ++L ++ +F++AV Y NP ++ + +R T ED+ + + Sbjct: 126 ATRQRYLGYLKAIFRFAVEHGYAKNNPLAKWKKVREPKRDMR-LTVEDLGKIMRHAAPHL 184 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK---TQKTGTIITVELPDGFMKLLAM 247 + + E+ L + ++ R + + T+ + + F LA Sbjct: 185 RWAIEVEWELGTRPGPTELFRIRWDDVDFAQCIVHVRGTKTHEANRVIPILPEFRDRLAA 244 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305 T ++ + K + + + A +AG+ + +R A++ G+ Sbjct: 245 TKAAMGGEYVVSYKGEPVKR-LNKALQRAAERAGIGYPVRMYDIRHLYASVMLANGSDLA 303 Query: 306 ELMATYGWKTVDQAE-TYTKGA 326 + G T+ + Y Sbjct: 304 AVSKILGHSTIATTQEHYYHVL 325 >gi|312135654|ref|YP_004002992.1| integrase family protein [Caldicellulosiruptor owensensis OL] gi|311775705|gb|ADQ05192.1| integrase family protein [Caldicellulosiruptor owensensis OL] Length = 310 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 33/268 (12%), Positives = 80/268 (29%), Gaps = 14/268 (5%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 + + ++ + + +E + + + + + K S+ P Sbjct: 11 WQEALQQFLFFKRAVGRSELTLRDYEYHITHFFKLYPNCFHDEQQLKKCLLEYLSQPVKP 70 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ---FKSFWS 187 ++ LT ++ FKW V + + NP + + K + + T+ + Sbjct: 71 ATYNLRLTYLKAFFKWCVEENILKSNPLEGLPKKKAEGRIVNIDTEILEKLLKLPDKNTF 130 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-----------IITVE 236 G + L +G+R ++ ++H + +T Sbjct: 131 CGLRDYALILLTLDTGIRPKEAFSLLIEHFDFKTLQVFIPSDAAKTRVSRVLPILPVTAN 190 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296 + + K F + + + + + K GV + +R A + Sbjct: 191 AVKKLIAVRHPEWDDKVPVFCTVTGRPLTRDIWHDRMEMYSKKLGVKIRPYDLRHTFALL 250 Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324 G L T G T++ + Y Sbjct: 251 YLKNGGYELSLQKTLGHTTLEMTKRYVH 278 >gi|118592747|ref|ZP_01550137.1| Integrase [Stappia aggregata IAM 12614] gi|118434798|gb|EAV41449.1| Integrase [Stappia aggregata IAM 12614] Length = 287 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 38/263 (14%), Positives = 84/263 (31%), Gaps = 17/263 (6%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS- 132 L + +L+ ++ S+ + R G ++ + +R+ T S Sbjct: 8 LRRRMIEDMTVRNLSPATQRSYLHAVSKFSRYFGRSP-DRLGLEDVRAFQVHLVATGISW 66 Query: 133 --AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 Q + ++R + + Q + + + + +++ +F Sbjct: 67 PALNQTVCALRFFYGVTLGQAEIPERIA----YARAPRKLPEVLSADEVVRFLEAV-PSL 121 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMT 248 + R A +GLR S+ V + + I+ K G V L + +L Sbjct: 122 KTRTALTAAYAAGLRVSEVVGLKVADIDSQRGVIRIRHGKGGKDRYVMLSAQLLHILRTY 181 Query: 249 PIGKETFFINNDKQ----KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302 ++ ++ T ++ AG++K + H +R AT + G Sbjct: 182 WRLARPPDWLFPRRNGSGPISITVLHAACRSARAAAGIDKRVTVHTLRHSFATHLLENGT 241 Query: 303 TAHELMATYGWKTVDQAETYTKG 325 + G + YTK Sbjct: 242 DIRIIQVLLGHNNLSSTARYTKV 264 >gi|302388220|ref|YP_003824042.1| integrase family protein [Clostridium saccharolyticum WM1] gi|302198848|gb|ADL06419.1| integrase family protein [Clostridium saccharolyticum WM1] Length = 368 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 46/364 (12%), Positives = 108/364 (29%), Gaps = 44/364 (12%) Query: 5 LRLPPFVTKERTRHGKIIYYFRKGHGRRIRLP-YPHESTFIPAYMSALTGSTPKREYINS 63 R + K + + + G R Y + Y KR Sbjct: 2 PRRGENIYKRKDGRWEGRCLKQDGKYRYFYARTYKGVKEKMKNYKETRESGKEKRYGGAK 61 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSG 122 + L + + A + ++ S+ +I +K+T + + Sbjct: 62 D------VCSLFESWLEDASLR-VKPSTYESYYRCMDKYVIPFFKQDKSQKLTEESVLCF 114 Query: 123 VESRKHTP----SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 V++ + P SS + LT ++ K ++ + V+ PK + + ++ ++ Sbjct: 115 VKAMREQPGLADSSRKKNLTIFKIALKEILKGTPEGFSIIEQVKIPKPDDKEVMVFSLKE 174 Query: 179 MQQFKSFWSEGSQPRLAFEF-LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237 + + R A Y+G+R + C + ++ +T + I Sbjct: 175 QRLIEQTALHSKDKRAAGIILCFYTGIRLGELCSLKWGDIDMEAGTLSIGRTVSRIKDFE 234 Query: 238 PDGFMKLL---------------------------AMTPIGKETFFINNDKQKMNATQFS 270 L + + + + ++ F Sbjct: 235 EGKSKTALLVGAPKSRKSLRKIPLPEFLLKLFKECGFSHANPDHYIFSQGDSPIDPRCFQ 294 Query: 271 IWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA-D 327 +K +A V ++ H +R AT + + G + G +V Y+ + Sbjct: 295 KLYKKLLKEAHVQDRKFHAIRHTFATRALEMGVDVKTISELLGHSSVSITLNVYSHSLME 354 Query: 328 RIRL 331 + +L Sbjct: 355 QKKL 358 >gi|260866896|ref|YP_003233298.1| putative integrase [Escherichia coli O111:H- str. 11128] gi|257763252|dbj|BAI34747.1| putative integrase [Escherichia coli O111:H- str. 11128] gi|323179992|gb|EFZ65548.1| integrase [Escherichia coli 1180] Length = 358 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 59/345 (17%), Positives = 109/345 (31%), Gaps = 23/345 (6%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALT---GSTPKREY 60 LPP + R+ Y G+ L A + + G K Sbjct: 11 RRDLPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLT 67 Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 TL + Y K + + I++ S I R D ITTK I Sbjct: 68 ARINSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIA 127 Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + + +SA +++ F+ A+ + ++ NP + K + R E Sbjct: 128 AMLSGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEY 187 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 ++ +++ S RLA E + +G R D C + + ++ KTG I + Sbjct: 188 LKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTT 247 Query: 239 DGFMKLLAMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKAGV-----NK 284 L + ++ +++ S +F +G+ Sbjct: 248 LHVDALGISMKETLDKCKEILGGETIIASTHREPLSSGTVSRYFMRARKASGLSFEGDPP 307 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + H +R SA + + G K+ A Y R Sbjct: 308 TFHELRSLSA-RLYEKQISDKFAQHLLGHKSDTMASQYRDDRGRE 351 >gi|225026538|ref|ZP_03715730.1| hypothetical protein EUBHAL_00787 [Eubacterium hallii DSM 3353] gi|224956152|gb|EEG37361.1| hypothetical protein EUBHAL_00787 [Eubacterium hallii DSM 3353] Length = 354 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 58/335 (17%), Positives = 97/335 (28%), Gaps = 36/335 (10%) Query: 11 VTKERTRHGKIIYYFRK----GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 V K++ HG FR G R+ Y + S + Sbjct: 3 VYKDK-AHGTWYTSFRYIDWTGKKRQKMKRGFKTKREALNYENEFKNSVAVEPDMQM--- 58 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGV-- 123 + Y S L NS + + II G+ +IT I Sbjct: 59 -----DKFVDIYF-SDKKNELKANSIRNKQHMINKHIIPYFGNKKLNEITPADIIQWQKI 112 Query: 124 -ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP-KRKTEGIRPWTKEDMQQ 181 + K + + + LF A R + NPC V+R K + + W KE+ + Sbjct: 113 IQENKFSKTYERMIQNQINALFNHAQRIYNLKENPCKKVKRMGKSDADKLDFWIKEEYDR 172 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSD----------------SCRAGVQHLQNNIFSIK 225 F S S+ L FE L ++G+R + + Sbjct: 173 FISGVDRKSEDYLMFEILFWTGIREGELLSLTIADFDMTNNLLHINKTYHRIDGKDVIST 232 Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NK 284 + ++ T+ +P+ + + F N + A K K GV Sbjct: 233 PKTDNSVRTIIIPNFLKEEVQEYISYHYGFPENERLFPIVARTLQKRMKRYEKKTGVKPI 292 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 H +R + G + G K + Sbjct: 293 RVHDLRHSHVAYLINQGVEPLIIKERLGHKNIQIT 327 >gi|62550837|emb|CAH64760.1| site-specific recombinase [uncultured bacterium] gi|194337964|emb|CAQ51376.1| InH class 1 integrase [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 337 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 36/303 (11%), Positives = 85/303 (28%), Gaps = 52/303 (17%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132 ++ + R+ + ++ + ++ + IR G + + + + + + S Sbjct: 16 VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 ++ L + V+ + + RP+ T +++ + + Sbjct: 76 VSTHRQALAALLFFYVKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230 RL + L +G+R S+ + V+ L + +I ++ Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193 Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265 + + A + + M Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253 Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 F FK +AG+ K + H +R AT +G + G V YT Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313 Query: 324 KGA 326 Sbjct: 314 HVL 316 >gi|138559|sp|P27078|VINT_BP434 RecName: Full=Integrase gi|215353|gb|AAA67900.1| integrase [Phage 434] Length = 356 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 59/345 (17%), Positives = 109/345 (31%), Gaps = 23/345 (6%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALT---GSTPKREY 60 LPP + R+ Y G+ L A + + G K Sbjct: 9 RRDLPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLT 65 Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 TL + Y K + + I++ S I R D ITTK I Sbjct: 66 ARINSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIA 125 Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + + +SA +++ F+ A+ + ++ NP + K + R E Sbjct: 126 AMLSGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEY 185 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 ++ +++ S RLA E + +G R D C + + ++ KTG I + Sbjct: 186 LKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTT 245 Query: 239 DGFMKLLAMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKAGV-----NK 284 L + ++ +++ S +F +G+ Sbjct: 246 LHVDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPP 305 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + H +R SA + + G K+ A Y R Sbjct: 306 TFHELRSLSA-RLYEKQISDKFAQHLLGHKSDTMASQYRDDRGRE 349 >gi|300919957|ref|ZP_07136417.1| phage integrase, SAM-like domain protein [Escherichia coli MS 115-1] gi|300413014|gb|EFJ96324.1| phage integrase, SAM-like domain protein [Escherichia coli MS 115-1] Length = 356 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 59/345 (17%), Positives = 109/345 (31%), Gaps = 23/345 (6%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALT---GSTPKREY 60 LPP + R+ Y G+ L A + + G K Sbjct: 9 RRDLPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLT 65 Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 TL + Y K + + I++ S I R D ITTK I Sbjct: 66 ARINSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLENITTKEIA 125 Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + + +SA +++ F+ A+ + ++ NP + K + R E Sbjct: 126 AMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEY 185 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 ++ +++ S RLA E + +G R D C + + ++ KTG I + Sbjct: 186 LKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTT 245 Query: 239 DGFMKLLAMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKAGV-----NK 284 L + ++ +++ S +F +G+ Sbjct: 246 LHVDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPP 305 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + H +R SA + + G K+ A Y R Sbjct: 306 TFHELRSLSA-RLYEKQISDKFAQHLLGHKSDTMASQYRDDRGRE 349 >gi|312876294|ref|ZP_07736280.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A] gi|311796940|gb|EFR13283.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A] Length = 314 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 32/268 (11%), Positives = 78/268 (29%), Gaps = 14/268 (5%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 + + ++ + + ++ + + + K S+ P Sbjct: 11 WQEAMQQFLFYKRAEGRSERTLSDYKYHITHFFDIYPNCFNDEQQLKKCLYEYLSQPIKP 70 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ---FKSFWS 187 ++ LT ++ FKW V + + NP + + K + + T+ + Sbjct: 71 ATYNLRLTYLKAFFKWCVEENILKSNPLEGLPKKKAEGRIVNIDTEILEKLLKLPDKNTF 130 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-----------IITVE 236 G + L +G+R ++ ++H + +T Sbjct: 131 CGLRDYALILLALDTGIRPKEAFSLLIEHFDFKTLQVFIPSNAAKTRVSRVLPILPVTAN 190 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296 + K F + + + + + + K GV + +R A + Sbjct: 191 AVKKLIAARHPEWDEKVPVFCTVTGRPLTSDIWHGRIEMYSKKLGVKIRPYDLRHTFALL 250 Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324 G L T G T++ + Y Sbjct: 251 YLKNGGYELSLQKTLGHTTLEMTKRYVH 278 >gi|146279095|ref|YP_001169254.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025] gi|145557336|gb|ABP71949.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025] Length = 361 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 65/343 (18%), Positives = 130/343 (37%), Gaps = 24/343 (6%) Query: 9 PFVTKERTRHGKIIYYFR--KGHGRRIRLPYPHE-STFIPAYMSALTGSTPKREYINSPR 65 P + E+ Y R + +P + Y +A G + Sbjct: 6 PGLWAEKLPSASTRYRVRAEGRKTKVTVIPVATDHPDVWDHYRAARAGEKWTGPATKT-T 64 Query: 66 KKPTTLKWLISEYRKS----AHWGSLAVNSRISFESYFDQIIR-------KSGDFDYRKI 114 +++WL+ +Y G + + +S ++ G++D + Sbjct: 65 AVAHSIEWLVEKYLAHLARVVEAGQASPLTLRQRKSQLRRMCAMPTDDGGTYGEYDMQA- 123 Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI-NPCLSVERPKRKTEGIRP 173 I + + +H P+ A + S+ +++WA+ + +A NP + + R G P Sbjct: 124 PRSAIIAARDQWRHKPAEADNLIKSISAMYRWAIDEAEIATGNPAAGIGKLNRGGGGAAP 183 Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-----NIFSIKTQK 228 T ED+++F++ G+ L +++ R D+ + G + I +K Sbjct: 184 RTAEDLKKFRAKHPLGTTAHLWLTLQMFTACRIDDARKLGRGNEVERAGALWIEFQPGKK 243 Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM-NATQFSIWFKAKATKAGVN-KSA 286 ++V L +K + T+ + + + A + AG+ KS+ Sbjct: 244 GSAPVSVPLLPQLLKATRAQKVQGATYLLTDYGRPFSTAESLRNRVRKWCAAAGIEGKSS 303 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 HG+RK + A+AG T H++MA +E YTKG +R Sbjct: 304 HGIRKAMGELLAEAGCTQHQIMAIMAHTKAKTSEIYTKGVERR 346 >gi|1197009|gb|AAA88676.1| unknown protein [Escherichia coli] Length = 337 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 35/303 (11%), Positives = 83/303 (27%), Gaps = 52/303 (17%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132 ++ + R+ + ++ + ++ + IR G + + + + + + S Sbjct: 16 VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 ++ L + + + + RP+ T +++ + + Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----------------------TQKTG 230 RL + L +G+R S+ + V+ L + +I + Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREHVS 193 Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265 + + A + + M Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253 Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 F FK +AG+ K + H +R AT +G + G V YT Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313 Query: 324 KGA 326 Sbjct: 314 HVL 316 >gi|256024112|ref|ZP_05437977.1| putative phage integrase [Escherichia sp. 4_1_40B] Length = 387 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 54/376 (14%), Positives = 108/376 (28%), Gaps = 61/376 (16%) Query: 17 RHGK-IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75 R G+ F +G+R + A T + Sbjct: 5 RRGEIWYASFTLPNGKRFKQSL-GTKDKRQATELHDKLKAEAWRVSKLGEIPDITFEEAC 63 Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP----- 130 + + S +S ++ R IT I S ++ + Sbjct: 64 VRWLEEKAHKK----SLDDDKSRIGFWLQHFAGMQLRDITESKIYSAMQKMTNRRHEENW 119 Query: 131 ------------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 ++ L+ ++ L + A +E+ ++ ++ P+ Sbjct: 120 KLRAEACRKKGKPVPEYTPKPASVATKATHLSFIKALLR-AAEREWKMLDKAPIIKVPQP 178 Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IF 222 K + IR + Q+ E + EF L +GLR S+ Q + Sbjct: 179 KNKRIRWLEPHEAQRLIDECPE--PLKSVVEFALATGLRRSNIINLEWQQIDMQRRVAWI 236 Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------------FS 270 + + K+ I V L D ++L + + + Sbjct: 237 NPEESKSNRAIGVALNDTACRVLKKQIGNHHHWVFVYKESCTKPDGTKAPTVRKMRYDAN 296 Query: 271 IWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +KA +AG++ H +R A+ AG L GW++++ Y Sbjct: 297 TAWKAALRRAGIDDFRFHDLRHTWASWLVQAGVPLSVLQEMGGWESIEMVRRYAH----- 351 Query: 330 RLGIKNSRRISSVVDS 345 L + + +DS Sbjct: 352 -LAPNHLTEHARQIDS 366 >gi|261344170|ref|ZP_05971814.1| site-specific recombinase, phage integrase family [Providencia rustigianii DSM 4541] gi|282567765|gb|EFB73300.1| site-specific recombinase, phage integrase family [Providencia rustigianii DSM 4541] Length = 338 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 47/331 (14%), Positives = 101/331 (30%), Gaps = 29/331 (8%) Query: 11 VTKERTRHGKI--IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 +T ++ G+ + +G+R+R A+ L + ++ ++ + K Sbjct: 1 MTIKKQADGRWLVQCFPNGRNGKRVR-KLFTTKGEAIAFERYLLEESQEKPWLGEKQDKR 59 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-- 126 L L+ + + + +S GD + K E R Sbjct: 60 K-LTELVETWF---RAHGITLGDGKKRKSSMLFACEAMGDPLAIEFNAKIFSIYREKRLS 115 Query: 127 ----------KHTPSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWT 175 TP + L R +F +R E+ +P V K + + + Sbjct: 116 GEIVRTDRLKTVTPRTVNLELAYFRAMFNELIRLDEWTKEHPLAKVRSYKTDEQEMGFLS 175 Query: 176 KEDMQQFKSFWSEGSQPRLAFE--FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233 ++++ S + + L L +G R S++ ++NN + K Sbjct: 176 DDEIRLLLSECEKSTSKDLIHVVKICLATGARWSEAENLTATQIRNNTITYVRTKGKRNR 235 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFS 293 ++ + D L F + F + + +S+H +R Sbjct: 236 SIPISDELANELPKGQGNNRLFKSC-------YSAFRSALERTGIELPKQQSSHVLRHTF 288 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324 A+ +G L G + Y+ Sbjct: 289 ASHFMMSGGNILVLQRILGHTDIKMTMRYSH 319 >gi|212692864|ref|ZP_03300992.1| hypothetical protein BACDOR_02364 [Bacteroides dorei DSM 17855] gi|212664653|gb|EEB25225.1| hypothetical protein BACDOR_02364 [Bacteroides dorei DSM 17855] Length = 407 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 47/343 (13%), Positives = 89/343 (25%), Gaps = 32/343 (9%) Query: 23 YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY-INSPRKKPTTLKWLISEYRKS 81 Y K R + + + + Y S Sbjct: 74 YLIDKPRTPAERQQNKETLELATKIRAEREQEFKESMLGYRLKKDRTVNFLDYFQAYINS 133 Query: 82 AHWGSLAVNSRISFES---YFDQIIRKSGD--------FDYRKITTKHIRSGVESRKHT- 129 ++ + + IT + + V + Sbjct: 134 Y--------TKKDIRMVQIALSRFKDFLKEQYPMNEFSIKPELITKEMMEQFVAYLQSRS 185 Query: 130 -PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187 A + + ++A+ + + +PC SV + + Q + Sbjct: 186 VGEGAKSIYQRFKKVIRYAIDHDVMLKDPCKSVTCKVDSQMLRKDVLSPEEIQKLAACHY 245 Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL- 244 E R AF F LYSGLR D +++ +K +++ T + L Sbjct: 246 DNENPNVRRAFIFCLYSGLRFCDVKDLTYKNVDYANRLLKFEQSKTKGHSASSGVVIPLN 305 Query: 245 --LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 L K +AG++K S H R A + Sbjct: 306 DGLLSIIGEAPADKNCLIFDLPTYESCCKSVKRWVKRAGIDKHISWHCARHSFAVNILNN 365 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343 GA + + G + E YT+ D +L + + + Sbjct: 366 GANIKTVASLLGHSGLKHTEKYTRAVD--KLKEEAINSLPELK 406 >gi|9507567|ref|NP_052898.1| integrase [Plasmid R100] gi|17530624|ref|NP_511222.1| integrase [IncN plasmid R46] gi|18466564|ref|NP_569372.1| putative integrase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|31795140|ref|NP_857998.1| DNA integrase [uncultured bacterium] gi|51492558|ref|YP_067855.1| integrase/recombinase [Aeromonas punctata] gi|55275332|ref|YP_133854.1| DNA integrase [uncultured bacterium] gi|58000325|ref|YP_190211.1| integrase [Escherichia coli] gi|60115569|ref|YP_209361.1| integrase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|66968565|ref|YP_245442.1| IntI1 DNA integrase [Pseudomonas aeruginosa] gi|77993248|ref|YP_358838.1| integrase [IncP-1beta multiresistance plasmid pB8] gi|111038080|ref|YP_709167.1| IntI1 integrase [IncP-1 plasmid pKJK5] gi|133756458|ref|YP_001096414.1| Tn21 integrase [Escherichia coli] gi|134044876|ref|YP_001102252.1| integrase IntI1 for transposon Tn21 [Yersinia pestis biovar Orientalis str. IP275] gi|145301311|ref|YP_001144151.1| integrase/recombinase [Aeromonas salmonicida subsp. salmonicida A449] gi|156144910|ref|YP_001427371.1| integrase [Pseudomonas aeruginosa] gi|160431700|ref|YP_001552088.1| integrase [Salmonella enterica subsp. enterica serovar Dublin] gi|165938049|ref|ZP_02226609.1| integrase/recombinase (E2 protein) [Yersinia pestis biovar Orientalis str. IP275] gi|170650836|ref|YP_001740003.1| integrase/recombinase [Escherichia coli SMS-3-5] gi|187736864|ref|YP_001816602.1| IntI1 [Escherichia coli 1520] gi|190410293|ref|YP_001965796.1| intI1 [Klebsiella pneumoniae] gi|190570443|ref|YP_001966865.1| integrase [Aeromonas hydrophila] gi|190576895|ref|YP_001966227.1| IntI1 integrase [Klebsiella pneumoniae] gi|194430536|ref|ZP_03063005.1| integrase/recombinase [Escherichia coli B171] gi|194439843|ref|ZP_03071908.1| integrase/recombinase [Escherichia coli 101-1] gi|194733854|ref|YP_002112947.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|209901149|ref|YP_002286930.1| integrase/recombinase [Klebsiella pneumoniae] gi|215528097|ref|YP_002332850.1| integrase [Klebsiella pneumoniae] gi|226807711|ref|YP_002791406.1| IntI1 [Enterobacter cloacae] gi|226807858|ref|YP_002791507.1| IntI1 integrase [Enterobacter cloacae] gi|226810024|ref|YP_002791719.1| IntI1 [Enterobacter cloacae] gi|226810139|ref|YP_002791835.1| IntI1 integrase [Enterobacter cloacae] gi|256367791|ref|YP_003108348.1| integrase/recombinase [Escherichia coli] gi|284000137|ref|YP_003377824.1| integrase IntL [Escherichia coli O26:H-] gi|297622240|ref|YP_003675796.1| IntI1 [Klebsiella oxytoca KOX105] gi|300819973|ref|ZP_07100154.1| integron integrase [Escherichia coli MS 107-1] gi|300906153|ref|ZP_07123870.1| integron integrase [Escherichia coli MS 84-1] gi|300955292|ref|ZP_07167681.1| integron integrase [Escherichia coli MS 175-1] gi|301302513|ref|ZP_07208643.1| integron integrase [Escherichia coli MS 124-1] gi|301329501|ref|ZP_07222300.1| integron integrase [Escherichia coli MS 78-1] gi|305696852|ref|YP_003864166.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|310286416|ref|YP_003937677.1| integrase/recombinase [Escherichia coli] gi|313107841|ref|ZP_07794014.1| integrase/recombinase (E2 protein) [Pseudomonas aeruginosa 39016] gi|330011345|ref|ZP_08307041.1| integron integrase [Klebsiella sp. MS 92-3] gi|331680833|ref|ZP_08381473.1| integrase/recombinase (E2 protein) [Escherichia coli H299] gi|50402171|sp|P62590|INT2_ECOLX RecName: Full=Integrase/recombinase; AltName: Full=E2 protein gi|50402172|sp|P62591|INT2_PSEAE RecName: Full=Integrase/recombinase; AltName: Full=E2 protein gi|50402173|sp|P62592|INT2_SALTI RecName: Full=Integrase/recombinase; AltName: Full=E2 protein gi|2120150|pir||I39499 integrase - Acinetobacter baumannii gi|6752460|gb|AAF27722.1|AF156486_1 integrase INTI1 [Klebsiella pneumoniae] gi|7381448|gb|AAF61482.1|AF191564_1 integrase [Pseudomonas aeruginosa] gi|13940487|gb|AAK50385.1|AF313472_1 IntI1 integrase [Pseudomonas aeruginosa] gi|15384483|gb|AAK96393.1|AF313471_1 IntI1 integrase [Pseudomonas aeruginosa] gi|18958400|gb|AAL82587.1|AF355189_1 integrase IntI1 [Pseudomonas aeruginosa] gi|48206|emb|CAA31361.1| unnamed protein product [Escherichia coli] gi|151300|gb|AAA25857.1| integrase [Pseudomonas aeruginosa] gi|151817|gb|AAB59081.1| IntI1 integrase [Plasmid R46] gi|530814|gb|AAC44315.1| DNA integrase [Pseudomonas aeruginosa] gi|596251|gb|AAA56784.1| integrase [Acinetobacter baumannii] gi|3088617|gb|AAC14727.1| DNA integrase [Plasmid NR79] gi|3513661|gb|AAC33911.1| IntI1 DNA integrase [Escherichia coli] gi|5103166|dbj|BAA78802.1| integrase for In2 [Plasmid R100] gi|16357506|gb|AAK60185.2| integrase IntI1 [Escherichia coli] gi|16505880|emb|CAD09758.1| putative integrase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|17342661|gb|AAL13418.1| integrase [IncN plasmid R46] gi|21898667|gb|AAM77079.1| integrase [uncultured bacterium] gi|29329827|emb|CAD57181.1| integrase [Aeromonas salmonicida] gi|30349168|gb|AAP20904.1| integrase [Escherichia coli] gi|30349183|gb|AAP20918.1| integrase [Escherichia coli] gi|30350250|gb|AAP22972.1| IntI1 [Escherichia coli] gi|31746384|emb|CAD97509.1| DNA integrase [uncultured bacterium] gi|33086394|emb|CAD80250.1| integrase class1 [Pseudomonas aeruginosa] gi|34556020|emb|CAD57194.1| integrase [Aeromonas salmonicida] gi|40645553|dbj|BAD06398.1| DNA integrase [Klebsiella pneumoniae] gi|42391698|dbj|BAD08688.1| DNA integrase [Klebsiella pneumoniae] gi|42543943|dbj|BAD11025.1| DNA integrase [Klebsiella pneumoniae] gi|45502089|emb|CAF31510.1| IntI1 DNA integrase [Salmonella enterica] gi|45758127|gb|AAS76339.1| integrase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|45925935|gb|AAS79108.1| integrase [Shigella flexneri 2a] gi|45934117|gb|AAS79142.1| integrase [Pseudomonas aeruginosa] gi|46559086|emb|CAE52510.2| DNA integrase [Pseudomonas aeruginosa] gi|47716827|gb|AAT37602.1| integrase [Escherichia coli] gi|48526060|gb|AAT45232.1| integrase [Salmonella enterica subsp. enterica serovar Choleraesuis] gi|51470601|emb|CAG15092.1| integrase/recombinase [Aeromonas caviae] gi|54300645|gb|AAV32837.1| integrase [Pseudomonas aeruginosa] gi|54887450|emb|CAG34228.1| IntI1 integrase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|54887458|emb|CAG34236.1| IntI1 integrase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|54969638|emb|CAG27804.1| DNA integrase [uncultured bacterium] gi|66259843|gb|AAY43107.1| integrase [Enterobacter cloacae] gi|66862647|emb|CAI46945.1| IntI1 DNA integrase [Pseudomonas aeruginosa] gi|71361872|gb|AAZ30042.1| Integrase [Enterobacter cloacae] gi|72416446|emb|CAF31402.2| type I integrase [Pseudomonas aeruginosa] gi|77734001|emb|CAI10765.1| integrase [IncP-1beta multiresistance plasmid pB8] gi|81072647|gb|ABB55351.1| IntI1 integrase [Enterobacter cloacae] gi|87295510|gb|ABD37051.1| IntI1 [Escherichia coli] gi|88702681|gb|ABD49194.1| integrase [Achromobacter xylosoxidans] gi|88911246|gb|ABD58919.1| IntI1 [Pseudomonas aeruginosa] gi|89033269|gb|ABD59947.1| Tn21 integrase [Escherichia coli] gi|89211896|gb|ABD63310.1| IntI1 [Bordetella bronchiseptica] gi|89243390|gb|ABD64875.1| integrase [Aeromonas hydrophila] gi|89330180|emb|CAJ84004.1| integrase [Salmonella enterica subsp. enterica serovar Keurmassar] gi|92112119|gb|ABE73722.1| integrase [Acidovorax sp. MUL2G8] gi|92112131|gb|ABE73754.1| integrase [Burkholderiales bacterium MUL2G11] gi|110264479|gb|ABG56842.1| IntI1 integrase [Klebsiella pneumoniae] gi|110781085|emb|CAK02669.1| IntI1 integrase [IncP-1 plasmid pKJK5] gi|112553509|gb|ABI20478.1| integrase [uncultured bacterium] gi|114147178|gb|ABI50465.1| integrase [Klebsiella pneumoniae] gi|114147192|gb|ABI50478.1| IntI1 [Klebsiella pneumoniae] gi|116294895|gb|ABJ98410.1| IntI1 [Shigella flexneri 5] gi|118402696|emb|CAI94353.1| type I integrase [Pseudomonas aeruginosa] gi|118402704|emb|CAI94360.1| type I integrase [Pseudomonas aeruginosa] gi|118402713|emb|CAI94368.1| type I integrase [Pseudomonas aeruginosa] gi|118402722|emb|CAI94376.1| type I integrase [Pseudomonas aeruginosa] gi|119116290|emb|CAH10848.2| integrase-recombinase [Pseudomonas aeruginosa] gi|133905410|gb|ABO42172.1| integrase IntI1 for transposon Tn21 [Yersinia pestis biovar Orientalis str. IP275] gi|142856088|gb|ABO92403.1| integrase/recombinase [Aeromonas salmonicida subsp. salmonicida A449] gi|145848971|emb|CAM91521.1| integrase intiI [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|146151087|gb|ABQ02853.1| intI1 [Klebsiella pneumoniae] gi|148455768|gb|ABQ65126.1| IntI1 [Pseudomonas aeruginosa] gi|156104633|emb|CAO91764.1| integrase [Pseudomonas aeruginosa] gi|159885569|dbj|BAF93171.1| integrase [Salmonella enterica subsp. enterica serovar Dublin] gi|165914072|gb|EDR32689.1| integrase/recombinase (E2 protein) [Yersinia pestis biovar Orientalis str. IP275] gi|165928622|gb|ABY74390.1| integrase [Klebsiella pneumoniae] gi|170293866|gb|ACB13001.1| IntI1 [Hydrogenophaga sp. PL2G6] gi|170522112|gb|ACB20289.1| integrase/recombinase [Escherichia coli SMS-3-5] gi|170785722|gb|ACB37786.1| IntI1 [Klebsiella pneumoniae] gi|172051446|emb|CAP07788.1| IntI1 [Escherichia coli] gi|182382566|gb|ACB87555.1| DNA integrase [Pseudomonas aeruginosa] gi|190683007|gb|ACE81789.1| IntI1 [Enterobacter cloacae] gi|192822646|gb|ACF06155.1| class 1 integrase [Klebsiella pneumoniae] gi|193409924|gb|ACF17979.1| IntI1 [Escherichia coli] gi|194326135|emb|CAQ64786.1| intergrase [Cloning vector pRG930cm] gi|194359398|gb|AAK59383.2| DNA integrase [Pseudomonas aeruginosa] gi|194411419|gb|EDX27772.1| integrase/recombinase [Escherichia coli B171] gi|194421233|gb|EDX37255.1| integrase/recombinase [Escherichia coli 101-1] gi|194709356|gb|ACF88579.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197359178|gb|ACH69795.1| class I integrase [Pseudomonas aeruginosa] gi|207581351|gb|ACI24747.1| integrase [Salmonella enterica subsp. enterica serovar Newport] gi|208436691|gb|ACI28900.1| IntI1 [Pseudomonas aeruginosa] gi|209574100|gb|ACI62988.1| integrase/recombinase [Klebsiella pneumoniae] gi|225730198|gb|ACO24910.1| integrase [Enterobacter aerogenes] gi|225730210|gb|ACO24921.1| integrase [Escherichia coli] gi|226425937|gb|ACO54030.1| IntI1 [Enterobacter cloacae] gi|226426085|gb|ACO54178.1| IntI1 integrase [Enterobacter cloacae] gi|226426251|gb|ACO54343.1| IntI1 [Enterobacter cloacae] gi|226426366|gb|ACO54458.1| IntI1 integrase [Enterobacter cloacae] gi|227809552|gb|ACP40994.1| DNA integrase intI1 [Shigella flexneri] gi|228480728|gb|ACQ42055.1| integrase/recombinase [Escherichia coli] gi|238773820|dbj|BAH66385.1| integrase [Pseudomonas aeruginosa] gi|247712942|gb|ACT09123.1| IntI1 [Pseudomonas aeruginosa] gi|253559511|gb|ACT32445.1| class I integrase [Xanthomonas oryzae pv. oryzae] gi|253559513|gb|ACT32446.1| class I integrase [Xanthomonas oryzae pv. oryzae] gi|254914163|gb|ACT83767.1| integrase IntI1 [Escherichia coli] gi|257043820|gb|ACV33237.1| DNA integrase [Enterobacter cloacae] gi|257043842|gb|ACV33257.1| DNA integrase [Pseudomonas aeruginosa] gi|257043850|gb|ACV33264.1| DNA integrase [Pseudomonas aeruginosa] gi|257123763|gb|ACV41753.1| IntI1 [Pseudomonas aeruginosa] gi|260677486|gb|ACX47970.1| integrase [Pseudomonas aeruginosa] gi|267850619|gb|ACY82390.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|281323234|gb|ADA60225.1| integrase/recombinase [Klebsiella oxytoca] gi|281600419|gb|ADA73403.1| Integrase/recombinase [Shigella flexneri 2002017] gi|283445077|gb|ADB20421.1| integrase IntI1 [Escherichia coli O26:H-] gi|284923819|emb|CBG36917.1| integrase [Escherichia coli 042] gi|289064109|gb|ADC80448.1| class 1 integron integrase IntI1 [Pseudomonas alcaligenes] gi|289064116|gb|ADC80454.1| class 1 integron integrase IntI1 [Pseudomonas oryzihabitans] gi|289064135|gb|ADC80472.1| class 1 integron integrase IntI1 [Comamonas testosteroni] gi|289065278|gb|ADC80781.1| IntI1 [Escherichia coli] gi|289065352|gb|ADC80852.1| IntI1 [Escherichia coli] gi|289551904|gb|ADD10607.1| IntI1 [Pseudomonas putida] gi|290964843|emb|CBH41111.1| class 1 integrase [Kluyvera georgiana] gi|295981465|emb|CBL87884.1| IntI1 integrase [Pseudomonas sp. Tik3] gi|296492059|gb|ADH29561.1| DNA integrase IntI1 [Klebsiella oxytoca KOX105] gi|299483209|gb|ADJ19347.1| IntI1 [Enterobacter cloacae] gi|300317797|gb|EFJ67581.1| integron integrase [Escherichia coli MS 175-1] gi|300402043|gb|EFJ85581.1| integron integrase [Escherichia coli MS 84-1] gi|300527473|gb|EFK48535.1| integron integrase [Escherichia coli MS 107-1] gi|300842038|gb|EFK69798.1| integron integrase [Escherichia coli MS 124-1] gi|300844364|gb|EFK72124.1| integron integrase [Escherichia coli MS 78-1] gi|302127772|emb|CBO78185.1| class 1 integrase [Salmonella enterica subsp. enterica serovar Enteritidis] gi|304376153|dbj|BAJ15315.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|308826745|emb|CBX36000.1| Integrase/recombinase [Escherichia coli] gi|310880516|gb|EFQ39110.1| integrase/recombinase (E2 protein) [Pseudomonas aeruginosa 39016] gi|312261322|gb|ADQ54342.1| integrase [Klebsiella pneumoniae] gi|315252947|gb|EFU32915.1| integron integrase [Escherichia coli MS 85-1] gi|315667013|gb|ADU55733.1| intI1 [Pseudomonas sp. 11BF10] gi|317109804|gb|ADU90743.1| Integrase/recombinase [uncultured bacterium] gi|321271381|gb|ADW79471.1| class 1 integron integrase IntI1 [Escherichia coli] gi|323903319|gb|ADY11083.1| IntI1 DNA integrase [Escherichia coli] gi|323959138|gb|EGB54804.1| integron integrase [Escherichia coli H489] gi|324020458|gb|EGB89677.1| integron integrase [Escherichia coli MS 117-3] gi|324110986|gb|EGC04975.1| integron integrase [Escherichia fergusonii B253] gi|325491815|gb|ADZ16819.1| class 1 integrase [Pseudomonas fluorescens] gi|325495829|gb|EGC93689.1| integrase [Escherichia fergusonii ECD227] gi|327536588|gb|AEA95421.1| integron integrase IntI1 [Salmonella enterica subsp. enterica serovar Dublin] gi|327536704|gb|AEA95536.1| integron integrase IntI1 [Salmonella enterica subsp. enterica serovar Dublin] gi|328534216|gb|EGF60841.1| integron integrase [Klebsiella sp. MS 92-3] gi|331081821|gb|EGI52979.1| integrase/recombinase (E2 protein) [Escherichia coli H299] Length = 337 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 35/303 (11%), Positives = 84/303 (27%), Gaps = 52/303 (17%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132 ++ + R+ + ++ + ++ + IR G + + + + + + S Sbjct: 16 VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 ++ L + + + + RP+ T +++ + + Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230 RL + L +G+R S+ + V+ L + +I ++ Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193 Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265 + + A + + M Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253 Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 F FK +AG+ K + H +R AT +G + G V YT Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313 Query: 324 KGA 326 Sbjct: 314 HVL 316 >gi|208703309|ref|YP_002267578.1| integrase/recombinase [Bacillus cereus H3081.97] gi|208658164|gb|ACI30531.1| integrase/recombinase [Bacillus cereus H3081.97] Length = 319 Score = 105 bits (263), Expect = 7e-21, Method: Composition-based stats. Identities = 44/307 (14%), Positives = 89/307 (28%), Gaps = 44/307 (14%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-------------DFDYRKITTKHIR 120 + Y + L+ N+ I ++ + IR D IT H+ Sbjct: 3 YLKMYVEHLQQKDLSHNTVIMYKKSINYFIRWFEETHANYESYYTTFDKAVGDITLDHLI 62 Query: 121 SGVESRKHTPS---------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 E T S + + ++ F + + + NP + + + E Sbjct: 63 KYREYLFETKSVTGKPYSLETIRLRVNCVKDFFSYLYEENVIESNPAKNFKNVRYVKESQ 122 Query: 172 RPWTKEDMQQFKSFW-----------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220 W D + + G + +L +GLR S+ ++ L N Sbjct: 123 VRWLTHDEKNRLLRYVEDPKLIIKNEWRGYRNLAIINIMLLAGLRASEVSNLKLEDLDNG 182 Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMT---------PIGKETFFINNDKQKMNATQFSI 271 I++ K + + K+L + F++ K + Sbjct: 183 FILIRSSKGLKGRKLPINHDLGKVLNKWLNVRNEKEQFSDSQYVFLSQRGSKFTEMGLTK 242 Query: 272 WFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD-RI 329 F K G+ S H +R + G H + G +V Y ++ Sbjct: 243 LFITLEKKTGIEGLSPHTLRHTFCHDLVEKGTPIHIIADYAGHSSVKTTMIYVTSSNMEK 302 Query: 330 RLGIKNS 336 + ++ Sbjct: 303 KTAVEKL 309 >gi|227892233|ref|ZP_04010038.1| phage integrase/recombinase [Lactobacillus salivarius ATCC 11741] gi|227865955|gb|EEJ73376.1| phage integrase/recombinase [Lactobacillus salivarius ATCC 11741] Length = 322 Score = 105 bits (263), Expect = 7e-21, Method: Composition-based stats. Identities = 31/264 (11%), Positives = 84/264 (31%), Gaps = 14/264 (5%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRK 127 + + ++ + + + + D + + + +++TT+ +R + R Sbjct: 45 EEYLQDFLAAKRVEGCSDRTEKYYRMTLDTFMNEI-QKNIQQVTTEDLRKYLTDYQKKRN 103 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + + F W ++ + +P + + K ++ E++++ + + Sbjct: 104 SSKVTIDNIRRIFSSFFSWLEDEDIIIKSPVRRIHKVKTPNNIKETYSDEELEKLRDNCT 163 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA 246 E + + L +G+R + R + K V L Sbjct: 164 E-IRDLALIDLLASTGMRVGELVRLNRDDIDFEERECVVLGKGNKERIVYFDARSKLHLK 222 Query: 247 MTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299 + + +++M+ + + G+ K H R+ AT + D Sbjct: 223 NYLLSRSDDNNALFVSLKKPQKRMSIGGIENRIRQLGREIGITKAHPHKFRRTLATNAID 282 Query: 300 AGATAHELMATYGWKTVDQAETYT 323 G +L G + +D Y Sbjct: 283 KGMPIEQLQKLLGHERIDTTLHYA 306 >gi|47094600|ref|ZP_00232245.1| integrase/recombinase XerC [Listeria monocytogenes str. 4b H7858] gi|47017024|gb|EAL07912.1| integrase/recombinase XerC [Listeria monocytogenes str. 4b H7858] Length = 241 Score = 105 bits (263), Expect = 7e-21, Method: Composition-based stats. Identities = 30/220 (13%), Positives = 68/220 (30%), Gaps = 19/220 (8%) Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + + ++ + ++S+R + + +R+ + NP V K + + + E+M+ Sbjct: 6 QKSFSRTTVARKISSLRSFYTFLLRENVINENPFTYVSHAKNQLRLPKFFYSEEMEALFQ 65 Query: 185 FWSEG-----SQPRLAFEFLLYSGLRCSDSCRAG-VQHLQNNIFSIKTQKTGTIITVELP 238 E + R+ E L +G+R S+ + + K V Sbjct: 66 VVYEDNETLTLRDRVLLEVLYGTGIRVSECAGILLPDLDTSYQAILIRGKGNKERYVPFG 125 Query: 239 DGFMKLLAMTPIGKETFF-----------INNDKQKMNATQFSIWFKAKATKAGV--NKS 285 + + +N+ + +KA + Sbjct: 126 VYAEDAITDYLPERANLMSRYKKSHDALLVNHYGDPLTTRGIRYCLSKIISKASLTRKIH 185 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 H +R AT + GA + G ++ + YT Sbjct: 186 PHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHV 225 >gi|167838354|ref|ZP_02465213.1| putative bacteriophage integrase [Burkholderia thailandensis MSMB43] Length = 284 Score = 105 bits (263), Expect = 7e-21, Method: Composition-based stats. Identities = 36/287 (12%), Positives = 77/287 (26%), Gaps = 23/287 (8%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 + +I Y S+ + ++ D RK+ +R V +R Sbjct: 3 FEDVIGIYMLEKKHR-----SKERDQYSLKRLQPHFSGRDLRKLKRGDVRRYVSARLADG 57 Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS--- 184 S+ + L + + + E W Sbjct: 58 VCESTVKRELRLLSAAINFVRTEHDYPELANPVQSLGLDGGESRVRWISRSEAVELILAA 117 Query: 185 -FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPD 239 + R L +G R ++ + + K G V L Sbjct: 118 GAAARQPHLRNFVRLALSTGCRKNELLALEWHRVDFERSHFRLECEHTKNGKRRLVPLNS 177 Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQ-----FSIWFKAKATKAGV-NKSAHGVRKFS 293 G + L ++ +++ F A +AG+ + H +R Sbjct: 178 GALSALRDQRDWVARHCAGSEWVFASSSGRRVSNLQKGFVAACARAGIEDFRIHDLRHTF 237 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSRRI 339 A+ G + + + G ++ E Y + D R+ ++ + Sbjct: 238 ASWLVMEGVSLYVVKDLLGHSSITVTERYAHLSPDHGRVAVQKLSPL 284 >gi|42563728|gb|AAS20532.1| Int1 [Pseudomonas aeruginosa] Length = 337 Score = 105 bits (263), Expect = 7e-21, Method: Composition-based stats. Identities = 35/303 (11%), Positives = 84/303 (27%), Gaps = 52/303 (17%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132 ++ + R+ + ++ + ++ + IR G + + + + + + S Sbjct: 16 VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 ++ L + + + + RP+ T +++ + + Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230 RL + L +G+R S+ + V+ L + +I ++ Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193 Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265 + + A + + M Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253 Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 F FK +AG+ K + H +R AT +G + G V YT Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313 Query: 324 KGA 326 Sbjct: 314 HVL 316 >gi|300899506|ref|ZP_07117748.1| site-specific recombinase, phage integrase family [Escherichia coli MS 198-1] gi|300922907|ref|ZP_07138984.1| site-specific recombinase, phage integrase family [Escherichia coli MS 182-1] gi|300947236|ref|ZP_07161442.1| site-specific recombinase, phage integrase family [Escherichia coli MS 116-1] gi|300356911|gb|EFJ72781.1| site-specific recombinase, phage integrase family [Escherichia coli MS 198-1] gi|300420785|gb|EFK04096.1| site-specific recombinase, phage integrase family [Escherichia coli MS 182-1] gi|300453136|gb|EFK16756.1| site-specific recombinase, phage integrase family [Escherichia coli MS 116-1] Length = 336 Score = 105 bits (263), Expect = 7e-21, Method: Composition-based stats. Identities = 42/307 (13%), Positives = 97/307 (31%), Gaps = 23/307 (7%) Query: 26 RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85 R G+RIR A+ + ++E+ R TL L+ + K H Sbjct: 28 RGRDGKRIR-RKFERKAEALAFERYTIANASQKEWGGQ-RADRRTLSELLDIWWK-YHGQ 84 Query: 86 SLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTS 139 + ++ F+ +++ GD +++ + + R + ++ + + Sbjct: 85 NHEHGTKE-----FNHLLKTISGIGDIPVSRMSKRALMDYRSMRLRDGISAATINRDMYR 139 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199 + +F ++ + + + P + + ++ + G L Sbjct: 140 LSGMFTKLIQLDEFSGQHPIHGLPPLAEANPEMTFLEKAEIEKLLNVLAG-DDLLVALLC 198 Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259 L +G R ++ + N + K G TV ++ K + Sbjct: 199 LSTGGRWTEVATLKPAQITNCRVTFLKTKNGKKRTVP--------ISEELEKKVKEEASA 250 Query: 260 DKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 K++ +F + N++ H +R A+ G L G ++ Q Sbjct: 251 KLFKVDYEKFCGILRRVKPDIPPNQATHILRHTFASHFMMNGGNIIALQQILGHASIQQT 310 Query: 320 ETYTKGA 326 Y A Sbjct: 311 MAYAHLA 317 >gi|293189843|ref|ZP_06608557.1| tyrosine recombinase XerC [Actinomyces odontolyticus F0309] gi|292821258|gb|EFF80203.1| tyrosine recombinase XerC [Actinomyces odontolyticus F0309] Length = 285 Score = 105 bits (263), Expect = 7e-21, Method: Composition-based stats. Identities = 39/276 (14%), Positives = 87/276 (31%), Gaps = 31/276 (11%) Query: 88 AVNSRISFESYFDQIIRKS-------GDFDYRKITTKHIRSGVESR---KHTPSSAIQFL 137 + ++ ++ ++ + +T + +RS + S+ + Sbjct: 2 SPHTVSAYLGDLHSLMEFLSLDADATPEQLREALTQRAVRSWLARTLADGGARSTIARHT 61 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS------- 190 ++R WA+R+ + +P + P+ P + D + + + + Sbjct: 62 AAIRNFTSWAMREGILVSDPAALLSSPRADQLLPSPLDESDARVLLNTARDEAAAGGASQ 121 Query: 191 -QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT 248 + E GLR S+ C + L +++ V L Sbjct: 122 IRNWAILELTYACGLRVSEVCALDIPSLNREALTVRVVGKGNKERVVPYGPPAADALDHW 181 Query: 249 PIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATIS 297 + F+ + +++ A +AGV + + HG+R +AT Sbjct: 182 LVRGRPQLAGERSGNALFLGDKGGRIDPRIVRSMVHKTAARAGVHDIAPHGLRHSTATHL 241 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 GA + G ++ + YT D RL Sbjct: 242 LQGGADLRAVQEMLGHSSLSTTQRYTH-VDTARLSA 276 >gi|260892725|ref|YP_003238822.1| integrase family protein [Ammonifex degensii KC4] gi|260864866|gb|ACX51972.1| integrase family protein [Ammonifex degensii KC4] Length = 378 Score = 105 bits (263), Expect = 7e-21, Method: Composition-based stats. Identities = 41/356 (11%), Positives = 110/356 (30%), Gaps = 40/356 (11%) Query: 27 KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS 86 G R+ + ++ L + E +PR T+ L+ + + + Sbjct: 25 TGKRRQKWVTVRGTKRDAEKVLAELLAKAGRGELGTAPRS--LTVAALLDMWLEVSR-RR 81 Query: 87 LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTSMRVLF 144 + ++ E+ G K+ + + + +P++ +R Sbjct: 82 WKPGTAVAAETAVKTWKELLGHVPAGKLGPADVEKALARMEGELSPATCRYRFGLLRQAM 141 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ---PRLAFEFLLY 201 +WAV+++ + +P V P+ + +R W++E++ +F + F L Sbjct: 142 RWAVKRKLLGQDPTEGVAPPRAPRKEVRVWSEEEIARFLGVLDSSGHRPAVKAFFRLALS 201 Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGT----------------------------II 233 +G+R + + + + ++T Sbjct: 202 TGMRKGELLALRWEDVDFEKGCLYVRRTRCHHTGGVHEPKSPSSCRKVALDAGSLECLRR 261 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKF 292 + F + ++ + + F++ +AGV H +R Sbjct: 262 LKREQAREKLRAGAEWCEQGLVFATRKGKALSVFRLACTFRSLCRRAGVPEIRIHDLRHT 321 Query: 293 SATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGIKNSRRISSVVDSDD 347 A++ G + G +V +TY+ + + + + + ++ Sbjct: 322 HASLLLRQGVHPKVVQERLGHSSVKITLDTYSHLLPDAQ--EQAVKALERALGGEE 375 >gi|171315564|ref|ZP_02904800.1| integrase family protein [Burkholderia ambifaria MEX-5] gi|171099401|gb|EDT44139.1| integrase family protein [Burkholderia ambifaria MEX-5] Length = 343 Score = 105 bits (263), Expect = 7e-21, Method: Composition-based stats. Identities = 44/307 (14%), Positives = 82/307 (26%), Gaps = 21/307 (6%) Query: 28 GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87 G+RIR AY + L + + R+ +L+ L+ + H L Sbjct: 19 RGGKRIR-KSFRTHAEAKAYENWLRVKAAENPDWSPVRRDSRSLRELVQLWYD-RHGREL 76 Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA---IQFLTSMRVLF 144 + + G+ + S R SA + ++R +F Sbjct: 77 SSG--AGTRDRLFAACVEMGEPTVDSFSADVFASYRARRLEAGISASNMNREHATLRAVF 134 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ---PRLAFEFLLY 201 R L R + E + ++ + S+ L L Sbjct: 135 NELSRLGLWERENPLGKLRQFKVQERELSFLDDESIRELLRELRASRNPGAELIAVVCLS 194 Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261 +G R S++ ++N K+ V + D + Sbjct: 195 TGARWSEAETLTRSQVRNGQIQFARTKSRRNRAVPIDDRLQHRVLAHADEHGRGVRIF-- 252 Query: 262 QKMNATQFSIWFKAKATKAGVNKSA----HGVRKFSATISADAGATAHELMATYGWKTVD 317 + F+ +AG+ A H +R A+ G L G + Sbjct: 253 -----STAFSAFREAVERAGLELPAGQLTHVLRHTFASHFMMNGGNILTLQRILGHANLT 307 Query: 318 QAETYTK 324 Y Sbjct: 308 MTMRYAH 314 >gi|8118290|gb|AAF72980.1|AF255921_1 recombinase [Shigella flexneri] gi|152063|gb|AAA91585.1| recombinase [Plasmid RGN238] Length = 337 Score = 105 bits (263), Expect = 7e-21, Method: Composition-based stats. Identities = 35/303 (11%), Positives = 84/303 (27%), Gaps = 52/303 (17%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132 ++ + R+ + ++ + ++ + IR G + + + + + + S Sbjct: 16 VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 ++ L + + + + RP+ T +++ + + Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230 RL + L +G+R S+ + V+ L + +I ++ Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193 Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265 + + A + + M Sbjct: 194 RARAWWLKDQAQGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253 Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 F FK +AG+ K + H +R AT +G + G V YT Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313 Query: 324 KGA 326 Sbjct: 314 HVL 316 >gi|319441371|ref|ZP_07990527.1| integrase/recombinase [Corynebacterium variabile DSM 44702] Length = 313 Score = 105 bits (263), Expect = 7e-21, Method: Composition-based stats. Identities = 46/298 (15%), Positives = 88/298 (29%), Gaps = 43/298 (14%) Query: 74 LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES---RKHT 129 I Y + + N+ ++ + G T H R ++ Sbjct: 4 AIDGYLEYLDLVKGRSANTVRAYGADLR--AAFEGVRTLDGFTLDHCRDVLDWAVENGDA 61 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---- 185 ++ + +S+R W V + +NP ++ PK R ++ + Sbjct: 62 KATLARIASSLRGFGSWLVHTGVLQVNPAAGLQTPKTSRTLPRVLREDQVGGVLEQARAH 121 Query: 186 ------------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-----IKTQK 228 + + + E L +G+R S+ A V+ L N K Sbjct: 122 AHREPSEGDPGPTPKDIRDWVMLEVLYATGIRVSELAGADVEDLGGNGDPGSRSLRVVGK 181 Query: 229 TGTIITVELPDGFMKLLAMTPIGKETF--------------FINNDKQKMNATQFSIWFK 274 V L + F+ +++ Q Sbjct: 182 GDKTRVVPFGPTVEAALHEWLAVRAGMLPASGVTRAAQPALFLGARGGRIDVRQVRTVVH 241 Query: 275 AKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIR 330 AGV + HG+R +AT D GA + G +++ + YT +R+R Sbjct: 242 RATGGAGVPEIAPHGLRHSAATAVLDGGADLRVVQQLLGHTSMNTTQIYTHVGTERLR 299 >gi|310287153|ref|YP_003938411.1| Integrase/recombinase XerC [Bifidobacterium bifidum S17] gi|309251089|gb|ADO52837.1| Integrase/recombinase XerC [Bifidobacterium bifidum S17] Length = 334 Score = 105 bits (263), Expect = 7e-21, Method: Composition-based stats. Identities = 47/311 (15%), Positives = 93/311 (29%), Gaps = 61/311 (19%) Query: 77 EYRKSAHW-GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGV--ESRKHTP 130 + L+ N+ ++ + + G D R++TT +R + E+R H Sbjct: 9 AFLAYLRANRGLSDNTVKAYGTDVRECLHALASRGIADLRQVTTDDLRGWMAFETRDHAR 68 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG- 189 SS + + S+R F WA + +P + PK T+ ++ + Sbjct: 69 SSMARKVVSVRSFFAWAHEHGRIEADPAAVLMTPKLPDTLPSVLTEAQAERLMDRVDDDA 128 Query: 190 -------------------------------------SQPRLAFEFLLYSGLRCSDSCRA 212 + E L +G+R ++ Sbjct: 129 SLHAASSQRYETRHDEMPRLDSAHRGEGMSQRDEVVALRDAAMLELLYATGIRVAELVGL 188 Query: 213 GVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFIN------------- 258 + + + +I+ V D K LA + Sbjct: 189 DIGDVDWSHRTIRVTGKGSKQRVVPFGDPAEKALAGWKEHGRPLILRRAGAGTLDTAALF 248 Query: 259 --NDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKT 315 ++++ A ++GV S H +R +AT D GA E+ G + Sbjct: 249 LGMRGRRIDQRIVRDVVHRAARESGVPDISPHSLRHSAATHMLDGGADLREVQEMLGHSS 308 Query: 316 VDQAETYTKGA 326 + + YT + Sbjct: 309 LRTTQRYTHVS 319 >gi|218232818|ref|YP_002365323.1| integrase/recombinase [Bacillus cereus B4264] gi|218160775|gb|ACK60767.1| integrase/recombinase [Bacillus cereus B4264] Length = 308 Score = 105 bits (263), Expect = 7e-21, Method: Composition-based stats. Identities = 44/286 (15%), Positives = 98/286 (34%), Gaps = 15/286 (5%) Query: 51 LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110 + + KK + + ++ K + +L + +++ F +K + Sbjct: 1 MKRRGELTDEELKIIKKKISDEEAYEKFFKDCYLRNLRPATIGYYKNEF-HGAKKIINKQ 59 Query: 111 YRKITTKHIRSGV--ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168 + K I + + ++ L ++R + + + + + NP +++ + + Sbjct: 60 LVEWVQKDIEDLILKSKQLMKVTTINTRLRALRSFYNFLDKNKLIDKNPMKNIKLLRDRQ 119 Query: 169 EGIRPWTKE-----DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223 + I + K G + + L +G+R S+ V+ ++ N Sbjct: 120 KTIETLDNQEIEKLIKTIRKQKTFVGFRDEVILLVFLDTGVRLSELVGINVEDVRYNKLI 179 Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGK-----ETFFINNDKQKMNATQFSIWFKAKAT 278 I+ K TV L D + L + FI+ D +++N Sbjct: 180 IRRTKNLFERTVYLSDTTQERLESYIKVRGEVATNKLFISQDNKELNPHSIQTRLTKYGK 239 Query: 279 KAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 +A ++K S H R A +G A LM G + + Y Sbjct: 240 EAKISKRVSPHTFRHTMAKRMIVSGLDAFSLMHLLGHTDITVTKRY 285 >gi|149196595|ref|ZP_01873649.1| phage integrase [Lentisphaera araneosa HTCC2155] gi|149140275|gb|EDM28674.1| phage integrase [Lentisphaera araneosa HTCC2155] Length = 298 Score = 105 bits (263), Expect = 7e-21, Method: Composition-based stats. Identities = 31/278 (11%), Positives = 84/278 (30%), Gaps = 28/278 (10%) Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-- 126 + + + + A ++ ++ ++ ++ + ++ Sbjct: 3 DSFQKYYRAMQLELKLQAKAKSTVDNYLRALRRVNDLIAS-PLDQLKEEELKLYFSELVD 61 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 ++ S+ ++ +++ +++E+ + R ++++ S Sbjct: 62 TYSWSTVKMDRCALSFFYQYVLKREWKWLEIVR----IPRVKSLPDILSQDETLLILSHL 117 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKL 244 + + R + GLR S+ R + + ++ K V LP ++ Sbjct: 118 EKA-RYRTCLTAIYSMGLRISEGVRIQTGDICKDRMRLHVRNSKGYKDRLVPLPQVTYQM 176 Query: 245 LAMTPIGKETFFINNDKQ------------KMNATQFSIWFKAKATKAGVNK--SAHGVR 290 L + + + M+ FKA +G+ K S H +R Sbjct: 177 LRDYWVMHRNPLLLFPRYAGKSRSNSKTTLHMDKGGVQSAFKAALADSGLAKQVSVHSLR 236 Query: 291 KFSATIS----ADAGATAHELMATYGWKTVDQAETYTK 324 AT +AG + G + Y+ Sbjct: 237 HSYATHLVEAGVEAGVNLRVIQEILGHSSPATTAIYSH 274 >gi|118443064|ref|YP_879283.1| phage integrase family site specific recombinase [Clostridium novyi NT] gi|118133520|gb|ABK60564.1| site-specific recombinase, phage integrase family, putative [Clostridium novyi NT] Length = 387 Score = 105 bits (263), Expect = 7e-21, Method: Composition-based stats. Identities = 46/380 (12%), Positives = 110/380 (28%), Gaps = 54/380 (14%) Query: 12 TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 +++T + K Y++R H + + T +E N+ Sbjct: 6 YRKKTVNNKEYYFYRLRHKNLKKPKDIYAKTVKELDSKI---KMIIKELDNNITNNKEYF 62 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK--SGDFDYRKITTKHIRSGVE---SR 126 ++ + H + ++ ++S F I D +++ I++ +R Sbjct: 63 GAFFKDWLYNTHMINKKPSTIERYDSIFRNYIEDSIIYDIKLKELNPSDIQNYYNVLVTR 122 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + SS + ++A + + ++ PK K + + + Sbjct: 123 GKSISSIKNLHKLIAPSIRYAYDSNRIMKDFSRAIIIPKDKEDTKLKKSSDVKPFTLEEQ 182 Query: 187 ------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 +G + + F L +GLR + + + I K+ I Sbjct: 183 LKFIEAIKGHELEMLFLTALDTGLRQGELFALTWNDIDLDTRHISVNKSFKSIRNISTGK 242 Query: 241 FMKLLAMT------------------------------------PIGKETFFINNDKQKM 264 + ++ F N + + Sbjct: 243 YENIIQTPKTSNSIRLVPIPVHLIDKLKQHKLLQKTLKLKLANLYEDNTLIFCNKFGKYL 302 Query: 265 NATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETY 322 ++ FK + ++ H +R AT + G A + G + +TY Sbjct: 303 DSGNVLKKFKKILNDNNLNDRKFHDLRHTYATRLFELGEEAKTVQTLLGHSNISITLDTY 362 Query: 323 TKGADRIRLGIKNSRRISSV 342 T D ++ K ++ ++ Sbjct: 363 THVLDSLK--EKAVSKLDTL 380 >gi|239904755|ref|YP_002951493.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1] gi|239794618|dbj|BAH73607.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1] Length = 411 Score = 105 bits (263), Expect = 7e-21, Method: Composition-based stats. Identities = 45/291 (15%), Positives = 86/291 (29%), Gaps = 23/291 (7%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSG-DFDYRKITT-----KHIRSG 122 T L Y S E+ + G D +T IR Sbjct: 123 TFGQLSMMYLDHLRVSGRTEKHIASLENLLKRMFFDILGKDTPVAGMTYLKDIVPFIRQM 182 Query: 123 VESRKHTP-----SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 + T +S ++ + +F + + E ++ +P ++ E R Sbjct: 183 QGVSQQTGKPRSQASVNRYCDYVDAIFNFGMEMELISKSPMKGRKK---AKEQPRDVQIG 239 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS--CRAGVQHLQNNIFSIKTQKTGTIITV 235 + S R A E G R S +H+ + +++ T T Sbjct: 240 IDDLKRIMDHAESHIRWAMEVCFNLGTRPGPSELFALRWEHVDFDAGTVRIYATKTKTFR 299 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNA-TQFSIWFKAKATKAGV--NKSAHGVRKF 292 +P L+ + + ++ + + T F KAG+ + + +R Sbjct: 300 TVPVTESFLIRLREMRDQSQSGFIVEYEGKPLTTIRRSFNTACEKAGITVDVRMYDLRHL 359 Query: 293 SATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSV 342 AT GA + G TV Y + + K ++ S+ Sbjct: 360 FATTMLANGADLAAVSKLMGHSTVKMTADVYYHYLEGEK--EKAVGKLPSL 408 >gi|212695142|ref|ZP_03303270.1| hypothetical protein BACDOR_04680 [Bacteroides dorei DSM 17855] gi|212662319|gb|EEB22893.1| hypothetical protein BACDOR_04680 [Bacteroides dorei DSM 17855] Length = 353 Score = 105 bits (263), Expect = 7e-21, Method: Composition-based stats. Identities = 43/312 (13%), Positives = 89/312 (28%), Gaps = 40/312 (12%) Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD--------YRKI 114 P L +S+Y L+ N+ S+++ F I + + I Sbjct: 18 KPTDFAKKLTDFLSKYL--PCERGLSTNTIESYKTTFILFITFMEEKKNIAVNKLAIKNI 75 Query: 115 TTKHIRSGVES----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170 T ++I + +E R + ++ L ++ F++ + +N + K K Sbjct: 76 TKENIIAFLEWLQSERHCSTATRNVRLAALHSFFRYLQYEMPENLNEWQQILSIKAKKNI 135 Query: 171 IRPWTKEDM-------QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223 + + QQ +G + + R + ++ Sbjct: 136 KKNVNYLTVDGIQLLLQQPDQSTKKGRRDLAMLSLMYDCAARVQEIIDLTPAMIRLTKPY 195 Query: 224 IKT-----------QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272 + L + F N+ +K + Sbjct: 196 TIKVIGKGNKPRIVPLMEKQVIHLKRYLVENKLLESHANFSPLFSNSRNEKFTRQGIANI 255 Query: 273 FKAKATKAGVN-------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 + A A V S H +R A AG + G ++V E Y + Sbjct: 256 LQTYANAARVKDSTLIPKLSPHSLRHSKAMHLLQAGVNLVYIRDILGHESVLTTEIYART 315 Query: 326 -ADRIRLGIKNS 336 + + R I+N+ Sbjct: 316 DSKQKREAIENA 327 >gi|70607234|ref|YP_256104.1| integrase/recombinase XerD [Sulfolobus acidocaldarius DSM 639] gi|68567882|gb|AAY80811.1| integrase/recombinase XerD [Sulfolobus acidocaldarius DSM 639] Length = 287 Score = 105 bits (263), Expect = 7e-21, Method: Composition-based stats. Identities = 42/270 (15%), Positives = 87/270 (32%), Gaps = 30/270 (11%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----------------TKH 118 +++ + + + N+ + + D R++T +K Sbjct: 16 NKFILTLNLAGASENTIRLYSIAIKDFLDFV-KKDPRQVTNSDVNAWLLKILKSSTRSKR 74 Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 +R E R+ ++A +LT++ KW + PK + IR T E+ Sbjct: 75 VREENEKRRMKLTTAKIYLTAVLRFLKWLGKDV--------KPTVPKARKNEIRALTYEE 126 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVE 236 +++ ++ + + L+ +G+R + VQ + I+ K G V Sbjct: 127 LEK-LKASAKKLRDAVILNLLIDTGIRAKELLSIKVQDIDLERRRIIIRNTKNGESRIVF 185 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296 LL + + M + K G++ H +R AT Sbjct: 186 FTSHTGALLKKYIQKNKKEPEDKLIN-MTYQALYRKLRRLGKKIGIDLRPHILRHTFATE 244 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326 + G + G K + + YT Sbjct: 245 AIRKGIPLPVVQKILGHKDIRVTQVYTHLV 274 >gi|310765754|gb|ADP10704.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617] Length = 345 Score = 105 bits (263), Expect = 7e-21, Method: Composition-based stats. Identities = 49/314 (15%), Positives = 93/314 (29%), Gaps = 35/314 (11%) Query: 55 TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRI-----SFESYFDQIIRKSGDF 109 P P +L L+ + K + + N+ + + G Sbjct: 15 DEVYRQPVGPAHDPKSLYALLLRFVKWRRERNWSENTLKVQTHHDYRFIC--WASERGIH 72 Query: 110 DYRKITTKHIRSGVESRKH---------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 +T + H +P + L ++V F+W +Q + NP Sbjct: 73 HAADVTRPVLERWQRHLYHYRKGNGEPLSPRTQRTALQPLQVWFRWLAKQNLILANPAAD 132 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSE-----GSQPRLAFEFLLYSGLRCSDSCRAGVQ 215 +E P+ + R + + + G + R E L +G+R + R Sbjct: 133 LELPRLEKHLPRTILSVEQVEDIVNRCDLNTLQGMRDRALLELLWSTGIRRGEVARLESW 192 Query: 216 --HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--------- 264 I +I K + + + + L + K Sbjct: 193 SADFSRKILTIVQGKGKQDRVIPVGERALWWLRHYLHEVRPEIVAVAGCKALFVAMDGVA 252 Query: 265 --NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321 A + AG+ K S H R AT + GA + A G ++V+ + Sbjct: 253 GLTANGITHAVVPYLRAAGIEKGSCHLFRHAMATQMLENGADLRWIQAMLGHRSVESTQI 312 Query: 322 YTKGADRIRLGIKN 335 YT+ + R + Sbjct: 313 YTQVSIRALQAVHA 326 >gi|228968233|ref|ZP_04129231.1| Integrase (Phage-related protein) [Bacillus thuringiensis serovar sotto str. T04001] gi|228791406|gb|EEM39010.1| Integrase (Phage-related protein) [Bacillus thuringiensis serovar sotto str. T04001] Length = 383 Score = 105 bits (263), Expect = 7e-21, Method: Composition-based stats. Identities = 37/359 (10%), Positives = 87/359 (24%), Gaps = 39/359 (10%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 + R Y G + + + A + K ++ + Sbjct: 4 KNLASFEKRATGWRYRVSYKDGDKYKTKTQGGFSTKKEAAIAASELEKKISRGHNLNAED 63 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128 + E+ + G +++ + + + + ++ + Sbjct: 64 KLFSEYMREWFEVYKKGKHSLSHEKNLLQSVKLVEEHFIGVRMKDLNRVLYQNFLNELSK 123 Query: 129 TPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + + + ++ K+A+ + +P + ++ K+ Sbjct: 124 KRAKMTVKKKHNCVKACIKYAIEDGILHRDPTYKAIIHGENETKSEELKFINQEEMKNIV 183 Query: 187 SE-------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL-- 237 E R F + +G R + + +I KT Sbjct: 184 DELRANLTPQYISRYIILFAIATGARFGEIMGMTWDCIDLEERTITINKTWDYRDKNDFG 243 Query: 238 --------------------------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271 L K FINN + + + Sbjct: 244 NTKNYQSVRTITIDQETVSMLKDLQTYQKEHALKTGLRNTKNLCFINNQMEIITNNAVNK 303 Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADR 328 K + V + H +R A+I G + G K + +TY+ D Sbjct: 304 VLKKICARCNVKPITCHSLRHTHASILLYNGVNIKYISRRLGHKDIVITLQTYSHVLDE 362 >gi|157964586|ref|YP_001499410.1| integrase [Rickettsia massiliae MTU5] gi|157844362|gb|ABV84863.1| Integrase [Rickettsia massiliae MTU5] Length = 386 Score = 105 bits (263), Expect = 7e-21, Method: Composition-based stats. Identities = 44/312 (14%), Positives = 95/312 (30%), Gaps = 14/312 (4%) Query: 27 KGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE-----YINSPRKKPTTLKWLISEYRKS 81 RI++ + + I A A + K T K L +Y Sbjct: 57 DKKYHRIKIGVFPDLSIIDARAKASELKGEIAKGYNPVEEKVRLAKELTFKELYDKYLNE 116 Query: 82 AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS-AIQFLTSM 140 + + + D+ + I I+ + T A +FL + Sbjct: 117 YSKINNKR--WRDYAASIDRYAKHLYPRKISTIQKADIQELFNNLTKTGKYGANRFLEVL 174 Query: 141 RVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199 +F A+ E + INP + ++ ++ + + E + F Sbjct: 175 SPVFSKAIEWELLTINPVIGIKKHKEQSRDRYLTREEIPRFFTAIAGEENQVMKDFFLIA 234 Query: 200 LYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI 257 LY+ +R + + + + K G + L D +++L + ++ Sbjct: 235 LYTSVRKDNILTMRWEQVSFADKQLYLPDTKNGDPHRLPLLDQAVEILKARKEQSTSEWV 294 Query: 258 NNDKQKMNA--TQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWK 314 + + + +K KAG+ H +R+ + A GA + + + Sbjct: 295 FPSETSSSGHLQEPKKAWKRICKKAGIENLRIHDLRRTIPSWMAMTGANQYVIGQLLNHR 354 Query: 315 TVDQAETYTKGA 326 Y + A Sbjct: 355 DPRSTAVYARLA 366 >gi|270307506|ref|YP_003329564.1| site-specific recombinase, phage integrase family [Dehalococcoides sp. VS] gi|270153398|gb|ACZ61236.1| site-specific recombinase, phage integrase family [Dehalococcoides sp. VS] Length = 332 Score = 105 bits (263), Expect = 7e-21, Method: Composition-based stats. Identities = 49/279 (17%), Positives = 93/279 (33%), Gaps = 30/279 (10%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTPS 131 ++ + G L+ + ++ + I G +IT + ++ + T S Sbjct: 31 LASFLLVCKVGQLSPATIHNYSYMVGKFIDFCSRNGVSTPPQITQLVVCLFIQELQMTNS 90 Query: 132 --SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 S + + +R W + ++I+P ++ PK I+P+ KE Q S Sbjct: 91 AQSVLDYFKQVRRFINWLRENDQISIDPLKNIRLPKVPRRIIQPFNKEQCQTLLDLVSLP 150 Query: 190 S----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKL 244 + + + + +G+RC + ++ L +IK G V + K Sbjct: 151 TLEARRNKAILMVFMDTGIRCQELADMKLEDLNFETETIKIFGKGAKERVVRISRRTQKA 210 Query: 245 LAMTPIGKETFFINNDK-----------------QKMNATQFSIWFKAKATKAGV---NK 284 L + N+ ++ + KAG+ Sbjct: 211 LLEYQFERMKLMPNDKCPFVWVSRLKNRYSRKQSHQLTNDGIRRMIENLGKKAGIQNLRC 270 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 S H R AT+S GA EL + G T+ YT Sbjct: 271 SPHTFRHTFATMSLLNGAGEFELQSLLGHSTLTMTRRYT 309 >gi|148994208|ref|ZP_01823501.1| tyrosine recombinase [Streptococcus pneumoniae SP9-BS68] gi|168488872|ref|ZP_02713071.1| tyrosine recombinase XerD [Streptococcus pneumoniae SP195] gi|147927349|gb|EDK78380.1| tyrosine recombinase [Streptococcus pneumoniae SP9-BS68] gi|183572517|gb|EDT93045.1| tyrosine recombinase XerD [Streptococcus pneumoniae SP195] gi|332073382|gb|EGI83861.1| phage integrase, N-terminal SAM-like domain protein [Streptococcus pneumoniae GA17570] Length = 298 Score = 105 bits (263), Expect = 7e-21, Method: Composition-based stats. Identities = 36/281 (12%), Positives = 86/281 (30%), Gaps = 37/281 (13%) Query: 74 LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP-- 130 LIS Y L+ ++ ++++ Q H+ S +E + Sbjct: 5 LISTYLDYCKTHKRLSSHTIRAYKNDLMQFYNS---------DYDHVESYIEHLTQSNIK 55 Query: 131 -SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER-PKRKTEGIRPWTKEDMQQFK----- 183 ++ + + M+V + + Q + NP + + + + + ++ Sbjct: 56 TNTLRRKIACMKVFYNYLKYQNIIEENPFNQLRFQFRTEKILPKTIPYDILKNIFIYLEQ 115 Query: 184 --------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTII 233 + + L LL +G+R S+ C ++ + N I + I Sbjct: 116 KVVISKTDYQKQKAERNLLIISLLLSTGIRISELCHIHLKDINLSNKTLHIIGKGKKERI 175 Query: 234 TVELPDGFMKLLAMTPI------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-- 285 +L F + + ++ + K + ++K+ Sbjct: 176 LFLGDQTTFNILETYINKTGKESNDFLFPGKHLPKPLSEQSVRLILKRIVEQNSLSKTIT 235 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 H R AT+ D + G ++ + YT + Sbjct: 236 PHMFRHSFATMLLDNDVDIRYIQQILGHSSISVTQIYTHVS 276 >gi|15842437|ref|NP_337474.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis CDC1551] gi|13882740|gb|AAK47288.1| tyrosine recombinase XerC [Mycobacterium tuberculosis CDC1551] Length = 315 Score = 105 bits (263), Expect = 7e-21, Method: Composition-based stats. Identities = 42/290 (14%), Positives = 96/290 (33%), Gaps = 27/290 (9%) Query: 71 LKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRK 127 ++ ++ E+ + +V++R ++ + D +T +RS + + Sbjct: 18 VQAILDEFDEYLALQCGRSVHTRRAYLGDLRSLFAFLADRGSSLDALTLSVLRSWLAATA 77 Query: 128 HTPSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 ++ + ++++ WAVR+ +A +P ++ PK + ++ + + Sbjct: 78 GAGAARTTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQALRAMA 137 Query: 185 FWSEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITV 235 G + RL E L +G+R S+ C V + ++ K TV Sbjct: 138 AAESGAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLGKGNKQRTV 197 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKM---NATQFSIWFKAKATKAG---------VN 283 L + + + A + + T + Sbjct: 198 PFGQPAADALHAWLVDGRRALVTAESGHALLLGARGRRLDVRQARTAVHQTVAAVDGAPD 257 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 HG+R +AT + GA + G ++ + YT A + Sbjct: 258 MGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAV 307 >gi|300941166|ref|ZP_07155675.1| site-specific recombinase, phage integrase family [Escherichia coli MS 21-1] gi|294490096|gb|ADE88852.1| putative integrase for prophage CP-933U [Escherichia coli IHE3034] gi|300454112|gb|EFK17605.1| site-specific recombinase, phage integrase family [Escherichia coli MS 21-1] Length = 341 Score = 105 bits (263), Expect = 7e-21, Method: Composition-based stats. Identities = 56/335 (16%), Positives = 101/335 (30%), Gaps = 39/335 (11%) Query: 6 RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65 +LPP V + Y + R + + A K E + R Sbjct: 12 KLPPNVYPNK-------YSYVWKPTSRESVTLTAIKDGLAALWK-------KYEETVNNR 57 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 + T L ++ SA + L+ ++ + + +++ G I +HIR ++ Sbjct: 58 DRAMTFGRLWEKFLASACYSDLSPRTQKDYLQHQKKLLAVFGKVPADSIKPEHIRRYMDK 117 Query: 126 RK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 R + + A +SM ++ W + YV NPC V + K K KE Sbjct: 118 RGEQSKTQANHEKSSMSRVYSWGYERGYVKANPCAGVSKFKAKNRERYVTDKEYQAVLSV 177 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 +A E R SD + + N+ I+ KTG Sbjct: 178 AP---LPVFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAA 234 Query: 245 LAMTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAGV------NKSAHGVRKFSATI 296 + + N + F+ + +AG + + H + Sbjct: 235 VEKAKQLPKSAYVISNQYGNRYMYKGFNEMWVEARNRAGKVSGILTDFTFHDL------- 287 Query: 297 SADAGATA-----HELMATYGWKTVDQAETYTKGA 326 G + + G KT Q Y + Sbjct: 288 -KAKGISDYEGSSRDKQLFSGHKTEGQVLIYDRKV 321 >gi|160895946|ref|YP_001561528.1| integrase family protein [Delftia acidovorans SPH-1] gi|160361530|gb|ABX33143.1| integrase family protein [Delftia acidovorans SPH-1] Length = 412 Score = 105 bits (263), Expect = 7e-21, Method: Composition-based stats. Identities = 56/365 (15%), Positives = 104/365 (28%), Gaps = 30/365 (8%) Query: 7 LPPFVTKERTRHGKI----IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE--- 59 L P + T G+ Y G R+ L E T A A R Sbjct: 40 LVPGFLCKITPAGRKVFMLQYRTNAGERRKPALGLYGELTVEQARSLAQEWLAQVRRGGD 99 Query: 60 --YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITT 116 + +K T+ L ++ + ++R ++ D+ I+ G + + Sbjct: 100 PAADKAAARKAPTVTELCVKFMEDHSKQRNKPSTRRGYQGVIDRCIVPFLGRIKVQDVKR 159 Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + ++ H P+ A + + MR +F A Y P Sbjct: 160 PDVAGAMKKMAHKPAEANRAFSVMRKMFNLAEVWGYRPDGTNPCRHVPVYPDGKATHLIS 219 Query: 177 EDMQQFKSFWSEGSQPR--------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228 ++ +G + LA R S+ + + + Sbjct: 220 DEDMGKLFRHLDGIEAEGLENYVIPLAIRLQFEFAGRRSEIISLEWAWVDLDNRRVVWPD 279 Query: 229 TGTIITVELPDGFMKLL-----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG-V 282 + T + L N+ + + ++ + AG Sbjct: 280 SKTGGMSKPLSEEAYRLLSTAPRRDGCPYVLPSPNDPAKHLTEGEYYGAWCRILKAAGAT 339 Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342 + HG+R SAT A++G MA KTV Y D R+ + + Sbjct: 340 HVGTHGIRHRSATDIANSGIPVKVGMALTAHKTVAMFMRYVHTED------DPVRQAAEL 393 Query: 343 VDSDD 347 V + Sbjct: 394 VANRR 398 >gi|218707888|ref|YP_002415407.1| Integrase/recombinase (E2 protein) [Escherichia coli UMN026] gi|293404547|ref|ZP_06648540.1| integron integrase IntI1 [Escherichia coli FVEC1412] gi|218434985|emb|CAR15926.1| Integrase/recombinase (E2 protein) [Escherichia coli UMN026] gi|291428259|gb|EFF01285.1| integron integrase IntI1 [Escherichia coli FVEC1412] Length = 337 Score = 105 bits (263), Expect = 7e-21, Method: Composition-based stats. Identities = 37/303 (12%), Positives = 85/303 (28%), Gaps = 52/303 (17%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132 ++ + R+ + ++ + ++ + IR G + + + + + + S Sbjct: 16 VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 ++ L + + + + RP+ T +++ + + Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230 RL + L +G+R S+ + V+ L + +I ++ Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193 Query: 231 TIITVE--------------------LPDGFMKLLAMTPIGKETFFINND-----KQKMN 265 P L + T + + M Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWLWFWVFAQHTHSTDPRSGVVRRHHMY 253 Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 F FK +AG+ K + H +R AT +G + G V YT Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313 Query: 324 KGA 326 Sbjct: 314 HVL 316 >gi|228955380|ref|ZP_04117385.1| Integrase (Phage-related protein) [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228804172|gb|EEM50786.1| Integrase (Phage-related protein) [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 383 Score = 105 bits (263), Expect = 7e-21, Method: Composition-based stats. Identities = 37/359 (10%), Positives = 87/359 (24%), Gaps = 39/359 (10%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 + R Y G + + + A + K ++ + Sbjct: 4 KNLASFEKRATGWRYRVSYKDGDKYKTKTQGGFSTKKEAAIAASELEKKISRGHNLNAED 63 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128 + E+ + G +++ + + + + ++ + Sbjct: 64 KLFSEYMREWFEVYKKGKHSLSHEKNLLQSVKLVEEHFIGVRMKDLNRVLYQNFLNELSK 123 Query: 129 TPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + + + ++ K+A+ + +P + ++ K+ Sbjct: 124 KRAKMTVKKKHNCVKACIKYAIEDGILHRDPTYKAIIHGENETKSEELKFINQEEMKNIV 183 Query: 187 SE-------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL-- 237 E R F + +G R + + +I KT Sbjct: 184 DELRANLTPQYISRYIILFAIATGARFGEIMGMTWDCIDLEERTITINKTWDYRDKNDFG 243 Query: 238 --------------------------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271 L K FINN + + + Sbjct: 244 NTKNYQSVRTITIDQETVSMLKDLQKHQKEHALKTGLRNTKNLCFINNQMEVITNNAVNK 303 Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADR 328 K + V + H +R A+I G + G K + +TY+ D Sbjct: 304 VLKKICARCNVKPITCHSLRHTHASILLYNGVNIKYISRRLGHKDIVITLQTYSHVLDE 362 >gi|170293912|gb|ACB13045.1| IntI1 [Thauera sp. B4] Length = 337 Score = 105 bits (263), Expect = 7e-21, Method: Composition-based stats. Identities = 35/303 (11%), Positives = 84/303 (27%), Gaps = 52/303 (17%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132 ++ + R+ + ++ + ++ + IR G + + + + + + S Sbjct: 16 VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 ++ L + + + + RP+ T +++ + + Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRTLG--FLEGEH 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230 RL + L +G+R S+ + V+ L + +I ++ Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193 Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265 + + A + + M Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253 Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 F FK +AG+ K + H +R AT +G + G V YT Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313 Query: 324 KGA 326 Sbjct: 314 HVL 316 >gi|301022944|ref|ZP_07186759.1| site-specific recombinase, phage integrase family [Escherichia coli MS 69-1] gi|300397285|gb|EFJ80823.1| site-specific recombinase, phage integrase family [Escherichia coli MS 69-1] Length = 331 Score = 105 bits (263), Expect = 7e-21, Method: Composition-based stats. Identities = 55/319 (17%), Positives = 102/319 (31%), Gaps = 18/319 (5%) Query: 14 ERTRHGKIIYYFRK--GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 ++ G+ R G+RIR A+ + + +E++ P TL Sbjct: 4 KKLDDGRYEVDVRPQGADGKRIR-RKFKTKGEAQAFERHVLVNYHNKEWLEKP-ADRRTL 61 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRKH 128 L+ + N + + G ++T K I R + + Sbjct: 62 TELLGRWWIYHGKSHERGNIERGRLTTIIAKFAEMGVSRADQLTKKTITDYRVVMMNDGL 121 Query: 129 TPSSAIQFLTSMRVLF-KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 P+S + L M +F K EY + NP V+R + + + E++ + S Sbjct: 122 KPASVNRHLAIMSGMFTKLIDAGEYHSHNPFREVKRLREAVTEMAFLSSEEITRLLS--M 179 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247 A L +G R S+ +H+ N + + K G T+ + +K + Sbjct: 180 LDGDELNATLVCLSTGGRWSEVSNLKAEHIINQMVTFMKTKNGKRRTIPVSQDLIKRIKT 239 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307 G+ + + + ++ H +R AT G L Sbjct: 240 KNSGRLFNA--------SYYKVRNALREVKPDLPDGQAVHVLRHTFATHFIMNGGNIITL 291 Query: 308 MATYGWKTVDQAETYTKGA 326 G + Q TY A Sbjct: 292 QRILGHSNIQQTMTYAHFA 310 >gi|258509880|ref|YP_003172631.1| phage-related integrase [Lactobacillus rhamnosus GG] gi|257149807|emb|CAR88780.1| Phage-related integrase [Lactobacillus rhamnosus GG] gi|259651144|dbj|BAI43306.1| phage integrase [Lactobacillus rhamnosus GG] Length = 385 Score = 105 bits (263), Expect = 7e-21, Method: Composition-based stats. Identities = 52/379 (13%), Positives = 112/379 (29%), Gaps = 52/379 (13%) Query: 11 VTKERTRHGKIIYYFRK-------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63 + K T+ GK + + ++ ++ ++ +A + Sbjct: 4 IKKYATKDGKEFWRVQVFAGNDLQTGHKKYKVRRGFKTKKEATVAAARLELAISNGDLEE 63 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSG 122 + KP + + E+ + ++ ++ F + I+ G ITTK ++ Sbjct: 64 EKPKPVFFRDVYEEWYGNY-INTVRESTWARTAGMFNNHILPAFGGKRIATITTKDVQKA 122 Query: 123 VESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK----TEGIRPWTKE 177 V+ + T ++ ++ + + +AVRQ Y++ NP +V P + WTKE Sbjct: 123 VKRWFEFTSANYKRWYNYVSSVMDYAVRQGYMSKNPAKAVVLPHHDDLAGDKPENFWTKE 182 Query: 178 DMQQFKSFWSEGSQ--PRLAFEFLLYSGLRCSDSCRAGVQHLQN---------------- 219 M F + + + + F L ++G+R + + Sbjct: 183 QMNHFFACIDQENHFDVFIMFRVLAFTGVRRGELLALTWNDVSFKENSIKVNKTLTQGDK 242 Query: 220 -NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF--------- 269 + + T+ + M L ++ F+ M Q Sbjct: 243 GHQIVQAPKTRAGRRTIPVDGQTMAYLKRWRRIQQETFLQLGINTMQPNQLLFTNTKNGY 302 Query: 270 ------SIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE- 320 S G+ + HG R + AG + G Sbjct: 303 QSLNTPSKRLHKLQDDNGLTPRITIHGFRHSFISNLLIAGVPVTSVQKLVGHTDPTITLG 362 Query: 321 TYTK-GADRIRLGIKNSRR 338 Y A + + Sbjct: 363 VYAHVSAKQESEATAALAK 381 >gi|160945568|ref|ZP_02092794.1| hypothetical protein FAEPRAM212_03097 [Faecalibacterium prausnitzii M21/2] gi|313113644|ref|ZP_07799225.1| site-specific recombinase, phage integrase family [Faecalibacterium cf. prausnitzii KLE1255] gi|158443299|gb|EDP20304.1| hypothetical protein FAEPRAM212_03097 [Faecalibacterium prausnitzii M21/2] gi|310624012|gb|EFQ07386.1| site-specific recombinase, phage integrase family [Faecalibacterium cf. prausnitzii KLE1255] Length = 342 Score = 105 bits (263), Expect = 7e-21, Method: Composition-based stats. Identities = 35/287 (12%), Positives = 79/287 (27%), Gaps = 25/287 (8%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 + + + ++A ++ S++ + I I + ++ + Sbjct: 47 FEDWADTWFEGHK-DNIAPTTQESYKYCLKMLKEGFYHRPLTVIRPIDIENFLKGMRRDG 105 Query: 131 SS---AIQFLTSMRVLFKWAVRQEYVAINPCL-SVERPKRKTEGIRPWTKEDMQQFKSFW 186 S + + +F+ A + V NP + + T + Sbjct: 106 RSDSYISKARGMLYQIFQKAEANDLVRRNPVRLAEKMRASGTAKRKEAFTTAEVAHLMKV 165 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------------- 231 + L+ LL +G+R + Q ++ + I ++ Sbjct: 166 LPDDRMGLSIRLLLGTGMRMQELLALEPQFIEEDGSVIHIRQAVKVVKGTVSIGSPKSKD 225 Query: 232 ---IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286 I V L + + + N T F F+ +AG + + Sbjct: 226 SIRDIPVPLNVRPCAIKLRDTTDQFIWESPKTGLPCNPTHFRDVFRKSLEEAGDVRLLTP 285 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 H R + G + + G + E Y + IR Sbjct: 286 HSCRHTYVSQMQALGVDIQTIQSIVGHADTEMTEHYLHVQESIRQSA 332 >gi|332177645|gb|AEE13335.1| integrase family protein [Porphyromonas asaccharolytica DSM 20707] Length = 414 Score = 105 bits (263), Expect = 7e-21, Method: Composition-based stats. Identities = 38/309 (12%), Positives = 93/309 (30%), Gaps = 22/309 (7%) Query: 55 TPKREYINSPRKKPTTLKWLISEYRKSAHW---GSLAVNSRISFESYFDQIIRKS----- 106 ++ K+ TTL +I Y SL+ +S + +R Sbjct: 93 ERLKQVYLGRDKEFTTLLPVIDRYLDHIAQQVGKSLSKDSLQKYTVVKTHFVRFLKSTYN 152 Query: 107 -GDFDYRKITTKHIRSGVESRKHTPS----SAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161 D + T + K + +A + L ++ + +A ++ + +P L + Sbjct: 153 REDIGLLEFTPSVVMDFELYLKTKANLAHNTAQKKLKLLKTMTIFAQKRGIIMHDPFLDI 212 Query: 162 ER---PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218 + P + + + + R F F ++GL D + + Sbjct: 213 KFHTKPVDRGFLTEDEVSLIVAKDLTRLPRLELVRDIFIFSCFTGLAYIDVRNLTPEDIV 272 Query: 219 NNIFSIKTQKTGTIITVELPDGFMKL--LAMTPIGKETFFINNDKQKMNATQFSIWFKAK 276 + + L ++ +T+ ++ + + + K Sbjct: 273 VMDDKEWVMSKRKKTNIAFNVLLLDLPKAIISKYNHDTYRDGKLFPILSNQKTNSYLKEI 332 Query: 277 ATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI--RLG 332 A G+ K + H R AT+ G + G + + Y + ++ Sbjct: 333 ADICGIKKNLTFHLARHTFATLCLSKGVPMESVSKMLGHTNIRTTQIYARITNKKIEHDM 392 Query: 333 IKNSRRISS 341 + + ++ Sbjct: 393 EQFADKLGK 401 >gi|325679665|ref|ZP_08159240.1| site-specific recombinase, phage integrase family [Ruminococcus albus 8] gi|324108695|gb|EGC02936.1| site-specific recombinase, phage integrase family [Ruminococcus albus 8] Length = 362 Score = 105 bits (263), Expect = 7e-21, Method: Composition-based stats. Identities = 49/337 (14%), Positives = 98/337 (29%), Gaps = 36/337 (10%) Query: 14 ERTRHGKIIYYFRKGH---GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 + + G+ G GRRI + + A A+ E T Sbjct: 7 YKRKDGRWECRISMGKDESGRRI-FRSFYGKSREEAEYKAMIAQGQADEEFA---VTEMT 62 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129 + L++E+ + ++ ++ +I G+ + K I + +E + Sbjct: 63 FRELVTEWL-HVTASRIKESTAANYAMKAEKHLIPAFGEIKCCLLKAKDIYAFIERKLKE 121 Query: 130 PSSAIQ---FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 S + + +F++A R+ + V K K E ++ ++ K Sbjct: 122 GLSVRYLSDIMVLFKSVFRYASREYRIRNVLDGIVLPKKNKPEIAVMNKEQQLRLEKYLD 181 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL-- 244 S + +Y GLR + C + + ++ KT + KL Sbjct: 182 KRPSVTSMGISISMYMGLRIGEVCALQWKDIDLEKRTLTVSKTIQRVQCRTGARHTKLII 241 Query: 245 ---------------------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 L E + ++ K+ + F A + Sbjct: 242 TEPKSESSKRTIPIPDCLLPMLRQFKDNGEVYVVSGRKKPVEPRTMQYRFAKILHNANLP 301 Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 H R AT + G L G +V+ Sbjct: 302 SFHYHSTRHLFATRCVELGFDVKTLSEILGHSSVEVT 338 >gi|260885794|ref|ZP_05735780.2| integrase [Prevotella tannerae ATCC 51259] gi|260851599|gb|EEX71468.1| integrase [Prevotella tannerae ATCC 51259] Length = 489 Score = 105 bits (263), Expect = 7e-21, Method: Composition-based stats. Identities = 34/310 (10%), Positives = 90/310 (29%), Gaps = 23/310 (7%) Query: 54 STPKREYINSPRKKPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKS---- 106 + ++ TL L ++ S++ + + + Sbjct: 174 LERIKAEFLGKKEDIDTLSQLFDKHNADIAQQVGISVSAATLQKYNVCRRHFLEFLQNGY 233 Query: 107 --GDFDYRKITTKHIRSGVESRKHT----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 D ++T IR + ++A + + + + + + + +P L+ Sbjct: 234 RRADIKLSELTYTVIREFDIYLRTAVGQNANTATKTMKTFKTIVILGQKMGVLHHDPFLN 293 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHL 217 + T E++ + + + R F F ++GL D + ++ Sbjct: 294 HRF-HLEPVNRGFLTDEEIMKIANKDFGIQRLELVRDVFIFSCFTGLAYIDVSNLTLDNI 352 Query: 218 QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--NATQFSIWFKA 275 +VE + + + K + + + + K Sbjct: 353 VTLDDKQWIMTKRQKTSVEANVLLLDIPKSIIAKYSHKTYRDGKLFPILSNQKTNSYLKE 412 Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI--RL 331 A G+ K + H R AT+S G + G + + Y + ++ Sbjct: 413 IADLCGIKKNLTFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKIEHD 472 Query: 332 GIKNSRRISS 341 + + ++ Sbjct: 473 MEQLADKLGK 482 >gi|253563307|ref|ZP_04840764.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5] gi|251947083|gb|EES87365.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5] Length = 394 Score = 105 bits (263), Expect = 7e-21, Method: Composition-based stats. Identities = 36/278 (12%), Positives = 86/278 (30%), Gaps = 14/278 (5%) Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 + + ++ E+ + L + + + F+ + +F I+ I Sbjct: 97 KKKIKPENSSFYDYYLEFVERKRKEGLNPETIRVYMTTFNVLKEFKAEFRISDISLSFIE 156 Query: 121 SGVESRK----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI----- 171 + + ++P + R + + NP + P + + + Sbjct: 157 QFDDHMREVNGNSPGGRNPKHKNFRTVILDIQKHNIPVDNPYRWFKIPSSEVKEVYLDKS 216 Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 T + + S+ + ++F + GLR SD+ + + I+ T Sbjct: 217 ELHTIMEYTERFDKSSKEYKILKMYQFSCFCGLRFSDTMDLRWKDIDFANCLIRRMMIKT 276 Query: 232 --IITVELPDGFMKLLAMTPIGKE-TFFINNDKQKMNATQFSIWFKAKATKAGVNKSA-- 286 + L +L + + + +A AG++K Sbjct: 277 KTEVITPLFPMARDILMERSNNGKLIGSDEKVFYNFAEPTVNQALRKEAKLAGIDKHITY 336 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H R AT+ +++ G K+V+ + Y K Sbjct: 337 HSSRHTFATLLVIDNVDIYKISKYLGHKSVNMTQRYLK 374 >gi|4210823|emb|CAA11470.1| intI1 [Pseudomonas aeruginosa] Length = 337 Score = 105 bits (263), Expect = 7e-21, Method: Composition-based stats. Identities = 35/303 (11%), Positives = 84/303 (27%), Gaps = 52/303 (17%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132 ++ + R+ + ++ + ++ + IR G + + + + + + S Sbjct: 16 VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 ++ L + + + + RP+ T +++ + + Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230 RL + L +G+R S+ + V+ L + +I ++ Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPTLREQLS 193 Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265 + + A + + M Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253 Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 F FK +AG+ K + H +R AT +G + G V YT Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313 Query: 324 KGA 326 Sbjct: 314 HVL 316 >gi|307354005|ref|YP_003895056.1| integrase family protein [Methanoplanus petrolearius DSM 11571] gi|307157238|gb|ADN36618.1| integrase family protein [Methanoplanus petrolearius DSM 11571] Length = 302 Score = 105 bits (263), Expect = 7e-21, Method: Composition-based stats. Identities = 42/289 (14%), Positives = 91/289 (31%), Gaps = 33/289 (11%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFD------QIIRKSGDFDYR------------ 112 + + + + + S+E I R G Sbjct: 6 FSEWLKRFSHHLRMRNFSPRTIASYEGAVKKFGYYLWIRRNMGQEKLVIYWNDLANARLD 65 Query: 113 ---KITTKHIRSGVES----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165 T I + R + ++ + ++S+ +++ Q V NP +++RPK Sbjct: 66 TEIDTTPMMINDFLAFLTSLRDYKATTLQRIISSLSSFYRYCYTQGVVDSNPLAAIDRPK 125 Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225 K + +R K + + RL + +G+R S+ C ++ + I+ Sbjct: 126 IKEKELRYL-KHNQVLSLFNSINNERDRLIIRTIYATGVRVSELCSINIEDIDFEDRIIR 184 Query: 226 TQKTG-TIITVELPDGFMKLLAMTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAGV 282 + G I TV + + ++ + G+ F + ++ F+ A Sbjct: 185 VKGKGGKIRTVFIDEDTLQDINHYTSGRISGPLFEGQQGKNISPRTVQHIFERY---APT 241 Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIR 330 + H +R A+ + G ++ E Y D R Sbjct: 242 GITPHKIRHSYASELYRRSKNLRVVQENLGHSSIQTTEVYLHTDIDERR 290 >gi|119869100|ref|YP_939052.1| phage integrase family protein [Mycobacterium sp. KMS] gi|119695189|gb|ABL92262.1| phage integrase family protein [Mycobacterium sp. KMS] Length = 407 Score = 105 bits (263), Expect = 7e-21, Method: Composition-based stats. Identities = 56/341 (16%), Positives = 109/341 (31%), Gaps = 39/341 (11%) Query: 18 HGK-IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76 HGK + R + S P+ T + Sbjct: 32 HGKGSRWRARYVDDQGREHARGFSRKVDAQAWLNGQVSDQVTGTWTDPKLSGVTFGVIAE 91 Query: 77 EYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG-----------VE 124 + ++ A + + S D ++ + D R ++ + ++ E Sbjct: 92 RWIQTKATR--APKTVAGYRSLLDVVVLPRWRDVPLRDVSFEDLQQWVSGLSVNGSTRFE 149 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 R +PS IQ + + ++AV+ +++ NP +E P++ R T E +Q+ Sbjct: 150 GRGLSPSRVIQAHQVVSQVLRYAVKAKHLPANPADGIELPRKPEVEQRYLTHEQLQRLAV 209 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII----------- 233 + R L Y GLR ++ V + + I+ +++ T + Sbjct: 210 A---SGRFRTFVLVLGYCGLRFGEAAALRVGDVNLSSRRIRIRRSVTAVTGQGLVEGPTK 266 Query: 234 -TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-------FSIWFKAKATKAGVN-K 284 K LA + ++++ + F A A GV Sbjct: 267 NHSARTVPVPKFLAPLIETEVGGRVDDELLFPSRRGGYLTEGEVRWVFDAAAVAVGVTGL 326 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK 324 + H +R A+++ AGA L G KT + Y Sbjct: 327 TPHELRHTCASLAIAAGANVKVLQTLLGHKTAMLTLDRYGH 367 >gi|320637940|gb|EFX07713.1| Phage integrase family protein [Escherichia coli O157:H7 str. G5101] Length = 356 Score = 105 bits (263), Expect = 7e-21, Method: Composition-based stats. Identities = 59/345 (17%), Positives = 109/345 (31%), Gaps = 23/345 (6%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALT---GSTPKREY 60 LPP + R+ Y G+ L A + + G K Sbjct: 9 RRDLPPNLY---IRNNGYYCYRGPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLT 65 Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 TL + Y K + + I++ S I R D ITTK I Sbjct: 66 ARINSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIA 125 Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + + +SA +++ F+ A+ + ++ NP + K + R E Sbjct: 126 AMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEY 185 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 ++ +++ S RLA E + +G R D C + + ++ KTG I + Sbjct: 186 LKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTT 245 Query: 239 DGFMKLLAMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKAGV-----NK 284 L + ++ +++ S +F +G+ Sbjct: 246 LHVDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPP 305 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + H +R SA + + G K+ A Y R Sbjct: 306 TFHELRSLSA-RLYEKQISDKFAQHLLGHKSDTMASQYRDDRGRE 349 >gi|126661477|ref|ZP_01732531.1| tyrosine recombinase xerC [Cyanothece sp. CCY0110] gi|126617235|gb|EAZ88050.1| tyrosine recombinase xerC [Cyanothece sp. CCY0110] Length = 285 Score = 105 bits (263), Expect = 7e-21, Method: Composition-based stats. Identities = 44/262 (16%), Positives = 83/262 (31%), Gaps = 17/262 (6%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132 +I + + + ++R + + Q + + + I+ ++S K S Sbjct: 11 EIIRSWL----FDKNSNHTRQLYNNTLKQF-QSFSSEPLSNVKIEDIQLWIDSLKLRGYS 65 Query: 133 AIQFLT---SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 ++ LF + Y+ N V+ PK K + + ++ Sbjct: 66 LHTIRVKVLCLKSLFSYCFDVGYLPFNVAARVKPPKPKETLSQRLLNVADIEKLIRATKT 125 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---IITVELPDGFMKLLA 246 + L + GLR S++ R Q LQ + G V +P G L Sbjct: 126 HRDFLMLSLIYACGLRISEASRLTWQDLQPRKDGGQALIDGKGGQSRVVLIPVGLWAKLM 185 Query: 247 MTPIGKETFFINNDKQKMN----ATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300 + + ++ K A AG+ SAH +R AT S + Sbjct: 186 AFQSLRSPHTDAVFYSRRQKELARSRIHQIVKQAALDAGINPKTSAHWLRHAHATHSLEN 245 Query: 301 GATAHELMATYGWKTVDQAETY 322 G L + G + + Y Sbjct: 246 GCDISLLQQSLGHSDITTTQRY 267 >gi|284920553|emb|CBG33615.1| integrase [Escherichia coli 042] Length = 356 Score = 105 bits (263), Expect = 8e-21, Method: Composition-based stats. Identities = 59/345 (17%), Positives = 109/345 (31%), Gaps = 23/345 (6%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALT---GSTPKREY 60 LPP + R+ Y G+ L A + + G K Sbjct: 9 RRDLPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLT 65 Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 TL + Y K + + I++ S I R D ITTK I Sbjct: 66 ARINSDNSVTLHSWLDRYEKILANRGIKQKTLINYMSKIKAIRRGLPDAPLENITTKEIA 125 Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + + +SA +++ F+ A+ + ++ NP + K + R E Sbjct: 126 AMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEY 185 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 ++ +++ S RLA E + +G R D C + + ++ KTG I + Sbjct: 186 LKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTT 245 Query: 239 DGFMKLLAMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKAGV-----NK 284 L + ++ +++ S +F +G+ Sbjct: 246 LHVDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPP 305 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + H +R SA + + G K+ A Y R Sbjct: 306 TFHELRSLSA-RLYEKQISDKFAQHLLGHKSDTMASQYRDDRGRE 349 >gi|257438381|ref|ZP_05614136.1| site-specific recombinase, phage integrase family [Faecalibacterium prausnitzii A2-165] gi|257199212|gb|EEU97496.1| site-specific recombinase, phage integrase family [Faecalibacterium prausnitzii A2-165] Length = 342 Score = 105 bits (263), Expect = 8e-21, Method: Composition-based stats. Identities = 35/287 (12%), Positives = 79/287 (27%), Gaps = 25/287 (8%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 + + + ++A ++ S++ + I I + ++ + Sbjct: 47 FEDWADTWFEGHK-DNIAPTTQESYKYCLKMLKEGFYHRPLTVIRPIDIENFLKGMRRDG 105 Query: 131 SS---AIQFLTSMRVLFKWAVRQEYVAINPCL-SVERPKRKTEGIRPWTKEDMQQFKSFW 186 S + + +F+ A + V NP + + T + Sbjct: 106 RSDSYISKARGMLYQIFQKAEANDLVRRNPVRLAEKMRATGTAKRKEAFTTAEVAHLMKV 165 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------------- 231 + L+ LL +G+R + Q ++ + I ++ Sbjct: 166 LPDDRMGLSIRLLLGTGMRMQELLALEPQFIEEDGSVIHIRQAVKVVKGTVSIGSPKSKD 225 Query: 232 ---IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286 I V L + + + N T F F+ +AG + + Sbjct: 226 SIRDIPVPLNVRPCAIKLRDTTDQFIWESPKTGLPCNPTHFRDVFRKSLEEAGDVRLLTP 285 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 H R + G + + G + E Y + IR Sbjct: 286 HSCRHTYVSQMQALGVDIQTIQSIVGHADTEMTEHYLHVQESIRQSA 332 >gi|222034355|emb|CAP77096.1| Phage integrase [Escherichia coli LF82] gi|312601703|gb|ADQ92377.1| integrase [Salmonella phage RE-2010] Length = 338 Score = 105 bits (263), Expect = 8e-21, Method: Composition-based stats. Identities = 49/339 (14%), Positives = 96/339 (28%), Gaps = 47/339 (13%) Query: 14 ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + +GK + Y +G+R+R A+ S K+ ++ + L Sbjct: 4 RKQPNGKWLCECYPNGRNGKRVR-KQFATKGEAIAFESFTMEEVNKKPWLGEKEDRRH-L 61 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESY---FDQIIRKSGDFDYRKITTKHIRSGVESR-- 126 LI ++ SL + + I GD ++T E+R Sbjct: 62 SELIEQWY------SLYGQTLADPKRLMAKLRIICNGLGDPIASELTAGDFTKYREARLK 115 Query: 127 ------------KHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRP 173 P + ++ +F + + A NP + K + Sbjct: 116 GEVRNEDGTLMSPVKPRTVNLEQRNLSSVFGTLKKLGHWSAPNPLAGLPTFKITEGELAF 175 Query: 174 WTKEDMQQFKSFWSEGSQPRLAFE--FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 + +++++ + +E P L L +G R S++ + + K Sbjct: 176 LSVDEIKRLLAACAESQSPSLLMIAKICLATGARWSEAENLQGHQISKYRITYTKTKGKK 235 Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK----SAH 287 TV + L T F+ +AG++ H Sbjct: 236 NRTVPISQDLYHELPKNRGKLFTPC-------------RKSFERAVKRAGIDLPEGQCTH 282 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 +R A+ G L G + Y A Sbjct: 283 VLRHTFASHFMMNGGNILVLRDILGHSDIKMTMVYAHFA 321 >gi|242278903|ref|YP_002991032.1| integrase family protein [Desulfovibrio salexigens DSM 2638] gi|242121797|gb|ACS79493.1| integrase family protein [Desulfovibrio salexigens DSM 2638] Length = 439 Score = 105 bits (263), Expect = 8e-21, Method: Composition-based stats. Identities = 39/348 (11%), Positives = 87/348 (25%), Gaps = 45/348 (12%) Query: 33 IRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT----------------------- 69 +R +Y A+ +R+ + + Sbjct: 92 VRKEKRFHDESDESYQQAVEWENQQRQNLKKGIIEEVVAQIKKEVVEHKDSSVINSMSSV 151 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVES--R 126 TLK +Y + + S +F+ +I +IT + ++ + Sbjct: 152 TLKEFADQYVEYCTGR-INPRSVKEKRRHFNTLIAHFTESCFVEEITAFKMNKFLQEVLK 210 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 T + + ++ + WA ++ E P + + Sbjct: 211 TKTGNMVNIIMKHLKAAWSWAGGFVEGFPQNSDPFRNIQKFPEQRHPRYVPPKEDLDKVF 270 Query: 187 SEG-SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV------ELPD 239 Q R+ + Y+G R ++ + + + I+ + Sbjct: 271 DVAEGQDRVMLKTFYYTGGRKNEIFSLKWEDVLFDSNQIRLWTNKRKHGNRESNLIPMVK 330 Query: 240 GFMKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKAGVNK-SAHGVR 290 ++L + + KAGV + HG+R Sbjct: 331 ELKRILTEWKKACPCESDYVFIEVRKKAPTYGQRYVYRKGFMERHCDKAGVKRFGFHGIR 390 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIKNS 336 AT + G + K + Y DR ++ Sbjct: 391 HLFATTLYNNGQPLAVVQKMMRHKNPNTTVRYLHEMGLDRALEAVEGV 438 >gi|310287230|ref|YP_003938488.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium bifidum S17] gi|309251166|gb|ADO52914.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium bifidum S17] Length = 377 Score = 105 bits (263), Expect = 8e-21, Method: Composition-based stats. Identities = 46/368 (12%), Positives = 92/368 (25%), Gaps = 62/368 (16%) Query: 39 HESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESY 98 T A P + LK + + L ++ ++ S Sbjct: 3 RGRTKAVALKRLKDKKLEYERSGRMPSQTTPYLKDWLDRWLDEIVKPRLRPSTLATYRSV 62 Query: 99 FDQ-IIRKSGDFDYRKITTKHIRSGVE------------SRKHTPSSAIQFLTSMRVLFK 145 + I G ++ KH R E R + ++A ++ Sbjct: 63 VEALIKPAIGGVRLGRLEPKHFRMMEEYITKGDDTCDPPRRPRSSATAGSAWRTLHKALD 122 Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205 AVR+ + NPC E P+ + T Q + + L + +G+R Sbjct: 123 DAVREGIIESNPCDRAESPRVVYTERKILTPAQAGQLINAEN-DVMWHLMWRLAYETGMR 181 Query: 206 CSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET----------- 254 + +Q I + + + Sbjct: 182 QGERLGLTNSEIQLIDNVICIVVEWQLKVYNNVKDARDIPSSLGARHVMGKAYLVPPKTN 241 Query: 255 -------------------------------FFINNDKQKMNATQFSIWFKAKATKAGVN 283 F+ D +N + +K + G+ Sbjct: 242 AGRRVIPLPESLAAELGLYIKGTGRVKPDDLVFVQEDGAPLNRMIETRAWKKALQRVGLP 301 Query: 284 KS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKG--ADRIRLGIKNSRR 338 H R +AT A G + + G + YT AD + + Sbjct: 302 GDFVPHSARHTAATAMAQLGMSDKVRESIMGHSDISVTNRVYTHVGTADASK-AVNGVET 360 Query: 339 ISSVVDSD 346 + ++ ++ Sbjct: 361 LLALEPAN 368 >gi|171741671|ref|ZP_02917478.1| hypothetical protein BIFDEN_00757 [Bifidobacterium dentium ATCC 27678] gi|283455017|ref|YP_003359581.1| phage integrase [Bifidobacterium dentium Bd1] gi|171277285|gb|EDT44946.1| hypothetical protein BIFDEN_00757 [Bifidobacterium dentium ATCC 27678] gi|283101651|gb|ADB08757.1| phage integrase [Bifidobacterium dentium Bd1] Length = 367 Score = 105 bits (263), Expect = 8e-21, Method: Composition-based stats. Identities = 50/344 (14%), Positives = 102/344 (29%), Gaps = 32/344 (9%) Query: 11 VTKERTRHGKIIYY--FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 + T+ G Y +R + Y A + P Sbjct: 3 IYSYNTKSGDKRYRVTYRDPDHSQRTKRGFRRRKDAQDY-LARMTTYIADNDYIDPNAGK 61 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK 127 T + + K + E + + G+ + I I++ V Sbjct: 62 TLVCQFADTWLKGKK-NVVKPKYYADLECSWRVHVCNAWGNREIASIRHSEIQTWVSELA 120 Query: 128 HTPSSAIQFLT--SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 S+ I ++ + AVR + NP + P+++ + T + Sbjct: 121 KKRSATITIRAHGVLKGVLDLAVRDGSIRRNPADGCQLPRKQRKERTYLTPAQVID--LA 178 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------------- 232 + G+ L + GLR ++ V+H+ ++ + + Sbjct: 179 HAAGTYQALILTLG-FCGLRWGEAAALRVKHVDTQNNRLRVRLSWVRSGKKHFEGAPKTW 237 Query: 233 --ITVELPDGFMKLLAMTPIGKETFFINND-----KQKMNATQFSIWFKAKATKAGVN-K 284 V +PD M + GK + + + + W+ +GV Sbjct: 238 EVRDVPVPDQVMSAIKEQCEGKGPEDLVFTAPSGGHLREQSAKNHGWYARALRDSGVPTL 297 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD 327 + H +R +A+I+ +GA + G K +TY D Sbjct: 298 TCHDLRHTAASIAISSGANVKAVQRMLGHKNAAMTLDTYADLFD 341 >gi|158425627|ref|YP_001526919.1| putative site-specific recombinase [Azorhizobium caulinodans ORS 571] gi|158332516|dbj|BAF90001.1| putative site-specific recombinase [Azorhizobium caulinodans ORS 571] Length = 327 Score = 105 bits (263), Expect = 8e-21, Method: Composition-based stats. Identities = 35/293 (11%), Positives = 82/293 (27%), Gaps = 34/293 (11%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIR----KSGDFD----YRKITTKHIRSGVE 124 + + L+ ++ ++ ++ G + +R+ + Sbjct: 27 AVEGWLARLAHERRLSPKTQDAYARDLTVVLNLLTLHLGHRPTVADMAALAPADVRAVLA 86 Query: 125 SRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 +R+ P + ++ + + R + R+ + +V PK +P + D + Sbjct: 87 ARRMEGVAPRTLVRLMAAARSFGRHLEREGLGKVGALAAVRAPKVPRSLPKPVSVSDAKA 146 Query: 182 FKSFWSEGSQPRLAFEFL---------LYSGLRCSDSCRAGVQHLQNN---IFSIKTQKT 229 + + R + GLR S++ + T K Sbjct: 147 LADPATRAGEDRAPWVLARDAAVIALLYGCGLRISEALGLTRSMMPEPGGGDQITVTGKG 206 Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV 282 V L + +A + ++A + + G+ Sbjct: 207 NKTRMVPLLPQVTQAVADYAALCPYVLEPDKPLFRGAKGGPLSARIVQMAVERMRGALGL 266 Query: 283 N--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 + H +R AT G + G ++ + YT D RL Sbjct: 267 PDSATPHALRHSFATHLLARGGELRAIQELLGHASLSTTQVYT-AVDATRLMD 318 >gi|288817618|ref|YP_003431965.1| phage integrase [Hydrogenobacter thermophilus TK-6] gi|288787017|dbj|BAI68764.1| phage integrase [Hydrogenobacter thermophilus TK-6] gi|308751216|gb|ADO44699.1| integrase family protein [Hydrogenobacter thermophilus TK-6] Length = 288 Score = 105 bits (263), Expect = 8e-21, Method: Composition-based stats. Identities = 44/283 (15%), Positives = 102/283 (36%), Gaps = 22/283 (7%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 L+ +++S + + + I++ + I+ G+ D I + I V++ S Sbjct: 4 DHLLDTWKRSLE-RTKSARTVITYIKSLESFIKHIGEKDLIHIDPRRIYEYVDTSSLNTS 62 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK----------TEGIRPWTKEDMQQ 181 S + L++++ +K+A R+ YV +E + + T+E++ + Sbjct: 63 SILTHLSAIKHFYKFAFRRGYVDKEKYSDIESVIDEVREDLGRNIAKRYPKALTEEEINK 122 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 S +G++ + LYSG+R S+ + + + IT + Sbjct: 123 ILSAV-KGAKYEKIYVLFLYSGIRLSEYLSLRKSDFYQDKSGLLWIRLSADITKRRKERL 181 Query: 242 MKLLAMTPIGKE--------TFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFS 293 + +L + + ++ ++ + K + S H R Sbjct: 182 VPVLGSSKEETYAVIDRLLVWIESYEENFRVKRGSLQVFTNRLSRKLCIPFSLHSFRHTY 241 Query: 294 ATISADAGATAHELMATYGWKTVDQA-ETYTKGA-DRIRLGIK 334 T ++G A + G V + Y K + +R R ++ Sbjct: 242 ITNLVNSGFPAEVVKEFAGHSNVRTTIDIYYKFSQERARQLVE 284 >gi|302039501|ref|YP_003799823.1| putative phage integrase [Candidatus Nitrospira defluvii] gi|300607565|emb|CBK43898.1| putative Phage integrase [Candidatus Nitrospira defluvii] Length = 437 Score = 105 bits (263), Expect = 8e-21, Method: Composition-based stats. Identities = 41/345 (11%), Positives = 94/345 (27%), Gaps = 39/345 (11%) Query: 12 TKERTRHGKIIYYFRK---GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 K R G + +RI + P + A + + Sbjct: 16 VKIRQWKGAWWIFIDHQGMRKAKRIGIGEPGKKAAKLAAQQIQARLALGQPAFQGQKSG- 74 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVE--- 124 TL+ + + + + + ++ I+ D + IT + +++ Sbjct: 75 MTLERYTEVFLERIEHAR-KRTTFVDYTKILNRDILPTLRGLDLQDITREKVKAMALAGL 133 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ--- 181 R +P + + + L A+ V +NP L + K T ++ Sbjct: 134 QRGQSPKTMQNIVRCLSSLLSHALEDNLVTVNPALKPGKFLPKITKRHKITPLTREEVAL 193 Query: 182 -FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------- 232 ++ ++ + F + +GLR + + I+ Q+ T Sbjct: 194 LIETAKAKLPRYYPLFLCAVRTGLRMGELLALQWGDIDWQGRFIEVQRNYTHFRLTTPKS 253 Query: 233 ----------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW-FKA 275 + + F + ++ F Sbjct: 254 GESRRVDMSRELAQTLRDLLTERQIEAAASQWTDTPAWVFCSETGGLLHPHNLRDRVFYG 313 Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 TKA + K H +R A++ G + + G ++ Sbjct: 314 LLTKAKLRKVRFHDLRHTFASLLLQQGESLVYVKEQMGHSSIQVT 358 >gi|134045801|ref|YP_001097287.1| phage integrase family protein [Methanococcus maripaludis C5] gi|132663426|gb|ABO35072.1| phage integrase family protein [Methanococcus maripaludis C5] Length = 287 Score = 105 bits (263), Expect = 8e-21, Method: Composition-based stats. Identities = 41/285 (14%), Positives = 88/285 (30%), Gaps = 18/285 (6%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHT 129 K L+ +Y + SL+ +S +++ + ++ D + +T + S + Sbjct: 6 KELVKKYLEFH--TSLSKDSLKYYKAGLNAFMKYFPDENKSWENLTVEDAIFFYRSYNVS 63 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 ++ I+ L + + WA++Q+Y+ NP + R + R + E + + Sbjct: 64 KNTKIRRLNDVNRFYNWAMKQKYLVENPIETFVTTLRPEKKERAYLTEKQFKILLSNVKD 123 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLLAM 247 FLL +G+R S+ V+ + I V + L Sbjct: 124 FNYYTYTLFLLKTGVRISEFVNLKVKQVDFENGIIFIHAGKGAKDRYVFMDVELASRLEY 183 Query: 248 TPIGK---ETFFINNDKQKMNATQFSIWFKAKATKAG--------VNKSAHGVRKFSATI 296 + N K + H +R AT Sbjct: 184 YLEMRILTNLSCNNFFVNKHGRKLAEDQITKYTDYLNEVMDGSISFRITPHILRHTFATA 243 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 + G L G + + Y ++ L + + ++ Sbjct: 244 MLEKGMDLKSLSLILGHEDIKTTSQYLHK-NKEALQKEYLKAMAR 287 >gi|227114983|ref|ZP_03828639.1| phage integrase family protein [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 328 Score = 105 bits (263), Expect = 8e-21, Method: Composition-based stats. Identities = 51/327 (15%), Positives = 91/327 (27%), Gaps = 35/327 (10%) Query: 14 ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + GK + Y G+R+R A+ + + R L Sbjct: 4 RKQASGKWLCECYPHGREGKRVR-KQFATKGEAVAFERFTMEQAENKPWTVEKRDTCK-L 61 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-------IRSGVE 124 LI + + +N +S D GD R + I Sbjct: 62 SDLIDVWY---RAHGITLNDGEGRKSILDCAGASLGD-PARDFSVYREKRLNGEISHNGR 117 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 K +P++ + L+ R LF R L RP + +E + ++D Sbjct: 118 EAKISPTTVNRELSYFRALFNELARLGEWNAANPLESVRPYKTSESEMAFLQKDQIARLL 177 Query: 185 FWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 E S+ + L + L +G R S++ L + K TV + + Sbjct: 178 HECEASKAKDLLLIVKLCLSTGARWSEAEELTRFQLSPYRVTFTKTKGKRNRTVPISETL 237 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV----NKSAHGVRKFSATIS 297 L + F+ +A + + +H +R A+ Sbjct: 238 YNALPRNNGRLF-------------SGCYNAFRKAMERADIVLPAGQCSHVLRHTFASHF 284 Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324 G L G + Y Sbjct: 285 MMNGGNILVLQRILGHTDIKMTMRYAH 311 >gi|255307072|ref|ZP_05351243.1| integrase [Clostridium difficile ATCC 43255] Length = 370 Score = 105 bits (263), Expect = 8e-21, Method: Composition-based stats. Identities = 47/365 (12%), Positives = 109/365 (29%), Gaps = 38/365 (10%) Query: 13 KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 ++R ++ + F + + L T+ Sbjct: 6 RKRNKNYVVYLEFEDEKTGKRKQKNMGTFDKKREASKRLNEVKESLYNDGFLVPSEITVS 65 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT-- 129 + ++ ++++ + ++ S I G + + + HI++ ++ + Sbjct: 66 EFLLDFLNKYS-ENISLATYNNYVSICKNYINPSIGRYKIQDLHPVHIQNYIDKLSYKLN 124 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 P S + +++ K A R + + N S+E P+ K + +E M + + Sbjct: 125 PQSIKIHINILKLAIKRAYRLKLIKENVMDSIEAPRYKKFKNEIYDREQMIKLLDLA-KN 183 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------------I 233 ++ L + GLR S+ ++ +I K + Sbjct: 184 TEMELPINLAIGLGLRISEVLGLTWDNIDFEENTITVNKITSRINGSVILKEPKTESSVR 243 Query: 234 TVELPDGFMKLLAMTPIGKETF-------------FINNDKQKMNATQFSIWFKAKATKA 280 + P M LL I + F N + + S FK K Sbjct: 244 KISSPKELMSLLKEYKIKQNKNLLKSSIRNNNNLLFFNKKCEPIAEDVMSKKFKRFLEKN 303 Query: 281 GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRR 338 + H +R T+ ++ + G + Y+ + + S + Sbjct: 304 ELPHIRFHDLRHSHVTLLINSKVPIKVISERVGHSNISTTLSVYSHVL--KEMDKEASDK 361 Query: 339 ISSVV 343 IS + Sbjct: 362 ISESL 366 >gi|94495392|ref|ZP_01301972.1| phage integrase [Sphingomonas sp. SKA58] gi|94424780|gb|EAT09801.1| phage integrase [Sphingomonas sp. SKA58] Length = 312 Score = 105 bits (263), Expect = 8e-21, Method: Composition-based stats. Identities = 36/276 (13%), Positives = 81/276 (29%), Gaps = 24/276 (8%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD--------YRKITTKHIRSG 122 LI +R +V++ ++++ ++++ + +R+ Sbjct: 19 SALIDRWRAHLALDRRRSVHTVRAYQATAERLVAFLEQHRGEAVTQAMLASLEQADLRAF 78 Query: 123 VESRKHTP---SSAIQFLTSMRVLFKW---AVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + SR+ SA + L+++R ++ + P + P+ + Sbjct: 79 LTSRRMDGIGNLSAARELSAVRGFLRFVGGEDARPPRLKGPRVKRGLPRPVSPDEAMALA 138 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 D+ + G++ L +GLR ++ T K G V Sbjct: 139 ADIAETAREGWIGARDWAVLLLLYGAGLRIGEAMGLTGAVWPLGDTLRVTGKRGKTRLVP 198 Query: 237 LPDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287 L + F ++ + + G+ + H Sbjct: 199 LLPQLRAAIESYVAACPYPLERDAPLFRGARGGPLSPALIRRAVQGARGRLGLSERTTPH 258 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 +R AT GA L G ++ + YT Sbjct: 259 ALRHSFATHLLGRGADLRSLQELLGHASLSSTQIYT 294 >gi|15610031|ref|NP_217410.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis H37Rv] gi|31794070|ref|NP_856563.1| site-specific tyrosine recombinase XerC [Mycobacterium bovis AF2122/97] gi|121638775|ref|YP_978999.1| site-specific tyrosine recombinase XerC [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148662738|ref|YP_001284261.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis H37Ra] gi|148824083|ref|YP_001288837.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis F11] gi|215404868|ref|ZP_03417049.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis 02_1987] gi|215431842|ref|ZP_03429761.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis EAS054] gi|219558917|ref|ZP_03537993.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis T17] gi|224991267|ref|YP_002645956.1| site-specific tyrosine recombinase [Mycobacterium bovis BCG str. Tokyo 172] gi|253798018|ref|YP_003031019.1| integrase xerC [Mycobacterium tuberculosis KZN 1435] gi|254232988|ref|ZP_04926315.1| integrase/recombinase xerC [Mycobacterium tuberculosis C] gi|254365534|ref|ZP_04981579.1| integrase/recombinase xerC [Mycobacterium tuberculosis str. Haarlem] gi|254551966|ref|ZP_05142413.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260187913|ref|ZP_05765387.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis CPHL_A] gi|260202029|ref|ZP_05769520.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis T46] gi|260206212|ref|ZP_05773703.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis K85] gi|289444449|ref|ZP_06434193.1| tyrosine recombinase XerC [Mycobacterium tuberculosis T46] gi|289448559|ref|ZP_06438303.1| integrase xerC [Mycobacterium tuberculosis CPHL_A] gi|289553317|ref|ZP_06442527.1| integrase xerC [Mycobacterium tuberculosis KZN 605] gi|289571083|ref|ZP_06451310.1| integrase xerC [Mycobacterium tuberculosis T17] gi|289575599|ref|ZP_06455826.1| integrase xerC [Mycobacterium tuberculosis K85] gi|289746693|ref|ZP_06506071.1| tyrosine recombinase XerC [Mycobacterium tuberculosis 02_1987] gi|289755006|ref|ZP_06514384.1| tyrosine recombinase XerC [Mycobacterium tuberculosis EAS054] gi|294994010|ref|ZP_06799701.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis 210] gi|297635512|ref|ZP_06953292.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis KZN 4207] gi|297732511|ref|ZP_06961629.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis KZN R506] gi|306777182|ref|ZP_07415519.1| integrase xerC [Mycobacterium tuberculosis SUMu001] gi|306781089|ref|ZP_07419426.1| integrase xerC [Mycobacterium tuberculosis SUMu002] gi|306785729|ref|ZP_07424051.1| integrase xerC [Mycobacterium tuberculosis SUMu003] gi|306789768|ref|ZP_07428090.1| integrase xerC [Mycobacterium tuberculosis SUMu004] gi|306794582|ref|ZP_07432884.1| integrase xerC [Mycobacterium tuberculosis SUMu005] gi|306798823|ref|ZP_07437125.1| integrase xerC [Mycobacterium tuberculosis SUMu006] gi|306804671|ref|ZP_07441339.1| integrase xerC [Mycobacterium tuberculosis SUMu008] gi|306808863|ref|ZP_07445531.1| integrase xerC [Mycobacterium tuberculosis SUMu007] gi|306968962|ref|ZP_07481623.1| integrase xerC [Mycobacterium tuberculosis SUMu009] gi|306973299|ref|ZP_07485960.1| integrase xerC [Mycobacterium tuberculosis SUMu010] gi|307081007|ref|ZP_07490177.1| integrase xerC [Mycobacterium tuberculosis SUMu011] gi|307085605|ref|ZP_07494718.1| integrase xerC [Mycobacterium tuberculosis SUMu012] gi|313659843|ref|ZP_07816723.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis KZN V2475] gi|54039881|sp|P67629|XERC_MYCBO RecName: Full=Tyrosine recombinase xerC gi|54042778|sp|P67628|XERC_MYCTU RecName: Full=Tyrosine recombinase xerC gi|166918887|sp|A1KMN8|XERC_MYCBP RecName: Full=Tyrosine recombinase xerC gi|166918891|sp|A5U6P9|XERC_MYCTA RecName: Full=Tyrosine recombinase xerC gi|254799347|sp|C1AG09|XERC_MYCBT RecName: Full=Tyrosine recombinase xerC gi|3250705|emb|CAA98378.1| PROBABLE INTEGRASE/RECOMBINASE XERC [Mycobacterium tuberculosis H37Rv] gi|31619665|emb|CAD96605.1| PROBABLE INTEGRASE/RECOMBINASE XERC [Mycobacterium bovis AF2122/97] gi|121494423|emb|CAL72904.1| Probable integrase/recombinase xerC [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124602047|gb|EAY61057.1| integrase/recombinase xerC [Mycobacterium tuberculosis C] gi|134151047|gb|EBA43092.1| integrase/recombinase xerC [Mycobacterium tuberculosis str. Haarlem] gi|148506890|gb|ABQ74699.1| tyrosine recombinase [Mycobacterium tuberculosis H37Ra] gi|148722610|gb|ABR07235.1| integrase/recombinase xerC [Mycobacterium tuberculosis F11] gi|224774382|dbj|BAH27188.1| site-specific tyrosine recombinase [Mycobacterium bovis BCG str. Tokyo 172] gi|253319521|gb|ACT24124.1| integrase xerC [Mycobacterium tuberculosis KZN 1435] gi|289417368|gb|EFD14608.1| tyrosine recombinase XerC [Mycobacterium tuberculosis T46] gi|289421517|gb|EFD18718.1| integrase xerC [Mycobacterium tuberculosis CPHL_A] gi|289437949|gb|EFD20442.1| integrase xerC [Mycobacterium tuberculosis KZN 605] gi|289540030|gb|EFD44608.1| integrase xerC [Mycobacterium tuberculosis K85] gi|289544837|gb|EFD48485.1| integrase xerC [Mycobacterium tuberculosis T17] gi|289687221|gb|EFD54709.1| tyrosine recombinase XerC [Mycobacterium tuberculosis 02_1987] gi|289695593|gb|EFD63022.1| tyrosine recombinase XerC [Mycobacterium tuberculosis EAS054] gi|308214464|gb|EFO73863.1| integrase xerC [Mycobacterium tuberculosis SUMu001] gi|308326075|gb|EFP14926.1| integrase xerC [Mycobacterium tuberculosis SUMu002] gi|308329639|gb|EFP18490.1| integrase xerC [Mycobacterium tuberculosis SUMu003] gi|308333778|gb|EFP22629.1| integrase xerC [Mycobacterium tuberculosis SUMu004] gi|308337172|gb|EFP26023.1| integrase xerC [Mycobacterium tuberculosis SUMu005] gi|308340939|gb|EFP29790.1| integrase xerC [Mycobacterium tuberculosis SUMu006] gi|308344815|gb|EFP33666.1| integrase xerC [Mycobacterium tuberculosis SUMu007] gi|308348763|gb|EFP37614.1| integrase xerC [Mycobacterium tuberculosis SUMu008] gi|308353464|gb|EFP42315.1| integrase xerC [Mycobacterium tuberculosis SUMu009] gi|308357329|gb|EFP46180.1| integrase xerC [Mycobacterium tuberculosis SUMu010] gi|308361213|gb|EFP50064.1| integrase xerC [Mycobacterium tuberculosis SUMu011] gi|308364867|gb|EFP53718.1| integrase xerC [Mycobacterium tuberculosis SUMu012] gi|323718504|gb|EGB27675.1| integrase xerC [Mycobacterium tuberculosis CDC1551A] gi|326904508|gb|EGE51441.1| integrase xerC [Mycobacterium tuberculosis W-148] gi|328457792|gb|AEB03215.1| integrase xerC [Mycobacterium tuberculosis KZN 4207] Length = 298 Score = 105 bits (263), Expect = 8e-21, Method: Composition-based stats. Identities = 42/288 (14%), Positives = 94/288 (32%), Gaps = 27/288 (9%) Query: 73 WLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHT 129 ++ E+ + +V++R ++ + D +T +RS + + Sbjct: 3 AILDEFDEYLALQCGRSVHTRRAYLGDLRSLFAFLADRGSSLDALTLSVLRSWLAATAGA 62 Query: 130 PSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 ++ + ++++ WAVR+ +A +P ++ PK + ++ + + Sbjct: 63 GAARTTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQALRAMAAA 122 Query: 187 SEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL 237 G + RL E L +G+R S+ C V + ++ K TV Sbjct: 123 ESGAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLGKGNKQRTVPF 182 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKM---NATQFSIWFKAKATKAG---------VNKS 285 L + + + A + + T + Sbjct: 183 GQPAADALHAWLVDGRRALVTAESGHALLLGARGRRLDVRQARTAVHQTVAAVDGAPDMG 242 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 HG+R +AT + GA + G ++ + YT A + Sbjct: 243 PHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAV 290 >gi|218688736|ref|YP_002396948.1| Integrase [Escherichia coli ED1a] gi|218426300|emb|CAR07125.1| Integrase [Escherichia coli ED1a] Length = 335 Score = 105 bits (263), Expect = 8e-21, Method: Composition-based stats. Identities = 44/316 (13%), Positives = 95/316 (30%), Gaps = 19/316 (6%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHE-STFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 ++ + G+ R R+ + + + + + + P + L Sbjct: 9 KQLKDGRYKVDVRPQGTEGKRIRKIFTLKSKAQEFERYVLQNFHDKPWQAKPADQRR-LS 67 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--- 129 LI + ++ ++I R+ D ++T K + + Sbjct: 68 ELIDAWW---VLDGRNQPYGDTYRVRLEKINREMRDPCASEMTRKFMLGYRSDKLQAGLM 124 Query: 130 PSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 PSS + L ++ +F + + + NP + + K + + + +++ + Sbjct: 125 PSSVNRDLCALSAMFTSLIDAEVFHNENPVRGIRKLKVRNTEMAFLSDDEIDRLLER--L 182 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248 R L +G R ++ +H+ N K G V + D + L+ Sbjct: 183 EGDARRVAVLCLSTGARWGEAAGLRGEHIVGNRVMFFNTKNGKSRAVPVSDTVLSLIKTR 242 Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELM 308 G F + ++ H +R AT G L Sbjct: 243 KTGLLYQADYIR--------FRDILQEVKPDLPKGQATHVMRHTFATHFMMNGGNIVTLQ 294 Query: 309 ATYGWKTVDQAETYTK 324 G T+ Q TY Sbjct: 295 RILGHTTIQQTMTYAH 310 >gi|332170984|gb|AEE20239.1| integrase family protein [Krokinobacter diaphorus 4H-3-7-5] Length = 274 Score = 105 bits (263), Expect = 8e-21, Method: Composition-based stats. Identities = 30/263 (11%), Positives = 73/263 (27%), Gaps = 11/263 (4%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKH-IRSGVESRKHTPSS 132 + + ++ ++ GD ++ + I + + + Sbjct: 2 FDSFNTILTAKRYSDSTVTTYIGLLVSYQNYLGDSRPLERLDLSYLITTLRDFILKKEYT 61 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 + + ++ S+ + + +++ + + Sbjct: 62 FNTQKQLISAV-SLYYKEALRQEIDLSSLRPRSPQRVLPDILSTYEVKSILHHTT-NLKH 119 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPDGFMKLLAMTPI 250 + A + GLR + + + +I + K + P+ LL Sbjct: 120 KAALTTIYALGLRVGELVDLRLAAMDKKRNTITIKAAKGKKDRQLPFPESLKPLLRQYYK 179 Query: 251 GKETFFINND---KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAH 305 + + K + A F+A KA + K + H +R AT D+G Sbjct: 180 EYKPTDYLFEGQSKPQYTAASLRSVFRASCKKARIKKKVTLHSLRHAYATHLMDSGTDLR 239 Query: 306 ELMATYGWKTVDQAETYTKGADR 328 + G + YT R Sbjct: 240 MIQELLGHSDIKTTMIYTHVTTR 262 >gi|320540499|ref|ZP_08040149.1| putative phage integrase [Serratia symbiotica str. Tucson] gi|320029430|gb|EFW11459.1| putative phage integrase [Serratia symbiotica str. Tucson] Length = 372 Score = 105 bits (263), Expect = 8e-21, Method: Composition-based stats. Identities = 44/342 (12%), Positives = 98/342 (28%), Gaps = 40/342 (11%) Query: 17 RHGKIIY-YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75 R G + Y + G+RI+ A T + Sbjct: 5 RRGNVWYGNYTTPGGKRIKESL-GTEDKRQAQELHDRRKAELWRIEKLGDFPNVTFEEAC 63 Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH--------------IRS 121 + + S + + ++ + IT I Sbjct: 64 LRWLEEKSEKK----SLDTDKVIISFWLKYFEGVKLKDITESENWKARVASATKKGEITP 119 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + + + ++ +L ++ LF+ +E+ I+ LS++ P+ K + IR + ++ Sbjct: 120 ELTQKSSSTATKAVYLAFIKALFR-VAEREWKWIDKALSLKVPQPKNKRIRWLEPHEAKR 178 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------ 229 E + +F L +GLR S+ Q Sbjct: 179 LVDECPE--PLKSTVQFALATGLRRSNIINLEWQQTDMQRRVAWINPEDSKSGRAIGVAL 236 Query: 230 ----GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-K 284 ++ ++ + T + + + +K +AG+ Sbjct: 237 NDTACKVLRNQIGHHHRWVFVHTKASNRSDGTITPSVRKMRVDSNTAWKMALKRAGIENF 296 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 H +R A+ +G + L GW++++ Y A Sbjct: 297 RFHDLRHTWASWLVQSGVSLSVLQEVGGWESIEMVRRYAHLA 338 >gi|295100875|emb|CBK98420.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii L2-6] Length = 341 Score = 105 bits (263), Expect = 8e-21, Method: Composition-based stats. Identities = 41/337 (12%), Positives = 90/337 (26%), Gaps = 37/337 (10%) Query: 25 FRKGHGRRIRLPYPHESTF----IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK 80 ++K R + Y + Y AL + + + + Sbjct: 4 YQKDGSPRFKTFYGKTQKEVKLKLKEYQDALISGIQLDTILY--------FEDWADTWFE 55 Query: 81 SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS---AIQFL 137 ++A ++ S++ + I I + ++ + S + Sbjct: 56 GHR-DNIAPTTQESYKYCLKMLKEGFYHRPLTVIRPIDIENFLKGMRRDGRSDSYISKAR 114 Query: 138 TSMRVLFKWAVRQEYVAINPCL-SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196 + +F+ A + V NP + + T + + L+ Sbjct: 115 GMLYQIFQKAEANDLVRRNPVRLAEKMRASGTAKRKEAFTTAEVAHLMKVLPDDRMGLSI 174 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------------------IITVELP 238 LL +G+R + Q ++ + I ++ I V L Sbjct: 175 RLLLGTGMRMQELLALEPQFIEEDGSVIHIRQAVKVVKGTVSIGSPKSKDSIRDIPVPLN 234 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296 + + + N T F F+ +AG + + H R + Sbjct: 235 VRPCAIKLRDTTDQFIWESPKTGLPCNPTHFRDVFRKSLEEAGDVRLLTPHSCRHTYVSQ 294 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 G + + G + E Y + IR Sbjct: 295 MQALGVDIQTIQSIVGHADTEMTEHYLHVQESIRQSA 331 >gi|154496779|ref|ZP_02035475.1| hypothetical protein BACCAP_01072 [Bacteroides capillosus ATCC 29799] gi|150274031|gb|EDN01131.1| hypothetical protein BACCAP_01072 [Bacteroides capillosus ATCC 29799] Length = 349 Score = 105 bits (263), Expect = 8e-21, Method: Composition-based stats. Identities = 46/316 (14%), Positives = 93/316 (29%), Gaps = 51/316 (16%) Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKH 118 K+ T I EY L + S+E R G +IT ++ Sbjct: 19 RKAKQEKTFDTCIDEYLYYCQSRRLRPKTMASYEQTLRLFERWIRDQEGLERPSEITEQN 78 Query: 119 IRSGVESRKHTP----------------------------SSAIQFLTSMRVLFKWAVRQ 150 IR + + ++ +L ++R F+W + Sbjct: 79 IRHYICDLQERGKYSFYICDRAKETNLPERRRDYRTPISVTTINNYLRNLRAFFRW-YEE 137 Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPRLAFEFLLYSGLRC 206 NP V+ + + ++++ + ++ R +L +G+R Sbjct: 138 CSGGKNPMAKVKLLSNERKPREYLEDAEVKKLLDSLDKSYFSENRDRTIILLILDTGMRL 197 Query: 207 SDSCRAGVQHLQNNIFSIKTQKT----GTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262 + + ++++ + I V K L K+ + ++ Sbjct: 198 GECLKLSMEYIDMHERVISIPAELTKGRKARCVYFSIKTAKALQQWLRFKDRYVESSYIF 257 Query: 263 KMNA-------TQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGW 313 F F+ ++G+ K S H +R A AG + L G Sbjct: 258 PTKESGMPLELRSFESNFRRYVMRSGIQKEISPHALRNNFAKRCILAGMDIYTLSRILGH 317 Query: 314 KTVDQAET-YTKGADR 328 +V E Y D+ Sbjct: 318 SSVTVTEKAYLDLTDQ 333 >gi|68262570|emb|CAJ13499.1| integrase/recombinase [Klebsiella pneumoniae] Length = 320 Score = 105 bits (263), Expect = 8e-21, Method: Composition-based stats. Identities = 35/303 (11%), Positives = 85/303 (28%), Gaps = 52/303 (17%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132 ++ + R+ + ++ + ++ ++ IR G + + + + + + S Sbjct: 16 VLDQLRERIRYLHYSLRTEQAYVNWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 ++ L + + + + RP+ T +++ + + Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230 RL + L +G+R S+ + V+ L + +I ++ Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193 Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265 + + A + + M Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253 Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 F FK +AG+ K + H +R AT +G + G V YT Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313 Query: 324 KGA 326 Sbjct: 314 HVL 316 >gi|29830251|ref|NP_824885.1| phage integrase [Streptomyces avermitilis MA-4680] gi|29607362|dbj|BAC71420.1| putative tyrosine-family recombinase/integrase [Streptomyces avermitilis MA-4680] Length = 393 Score = 105 bits (263), Expect = 8e-21, Method: Composition-based stats. Identities = 59/377 (15%), Positives = 107/377 (28%), Gaps = 41/377 (10%) Query: 1 MTPSLRLPPF---VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPK 57 M P R P + + + + Y + G R R + + + Sbjct: 1 MAPRKRNPNGSGSIWQRKDGRYEARVYVPQPDGTRKRKTVYGTT--WEECDTKRQELVLR 58 Query: 58 REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITT 116 + L + + K +++ +E ++ G ++ Sbjct: 59 DRQGIPTPTRSAKLSEWLPYWLKHYVEPRRKLSTYDKYEVQVRLYLVPLLGTRRLESLSV 118 Query: 117 KHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 +R + HT ++A + +R AVR+E + N VE P+ K IRPW Sbjct: 119 ADVRRFITRVQNAHTAATAKESHRVLRTALTAAVREELITRNVASLVEPPRVKQREIRPW 178 Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234 + E+ F AF + GLR + + + + ++ Sbjct: 179 SLEETLSFLEAARSDP-LYAAFVLAIAMGLRRGELGGLRWSDVDLDNRVVHVRQQTQRRR 237 Query: 235 ---------------VELPDGFMKLLAMT--------------PIGKETFFINNDKQKMN 265 V +P + L F + + + Sbjct: 238 GTLYDDDPKSRRIRVVPMPALCIAPLRWHRLRQRETFARTGVAWCEAGYVFATRNGRPVE 297 Query: 266 ATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYT 323 F A AG+ H R AT+ AG +M G + YT Sbjct: 298 PRNVYRSFTRVAADAGLRVVRLHDARHGCATLLTAAGVAPRVIMEILGHSQISITMDVYT 357 Query: 324 KGA-DRIRLGIKNSRRI 339 D R I + R+ Sbjct: 358 HVVHDTQREAISHMDRL 374 >gi|238922492|ref|YP_002936005.1| putative phage integrase/recombinase [Eubacterium rectale ATCC 33656] gi|238925709|ref|YP_002939226.1| putative phage integrase/recombinase [Eubacterium rectale ATCC 33656] gi|238874164|gb|ACR73871.1| putative phage integrase/recombinase [Eubacterium rectale ATCC 33656] gi|238877385|gb|ACR77092.1| putative phage integrase/recombinase [Eubacterium rectale ATCC 33656] gi|291525374|emb|CBK90961.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629] Length = 282 Score = 105 bits (263), Expect = 8e-21, Method: Composition-based stats. Identities = 32/268 (11%), Positives = 83/268 (30%), Gaps = 21/268 (7%) Query: 76 SEYR----KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--- 128 +Y ++ +L S +++Y + ++T + +R + ++K Sbjct: 3 EKYLLQLEEAGKIRNLKERSINCYKNYVSYFLNYMEKHP-EELTCQDVRDFLLAKKDNGL 61 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 ++ + +++R ++ + + + D ++ Sbjct: 62 KATTLNLYNSAIRFFYR-----NVLHVLWDDITVPRMIIEHKLPTVLSTDEIDRLLDATD 116 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLA 246 + + F + SG+R S+ + N ++ K L + + LL Sbjct: 117 DLKYKAMFATMYSSGMRVSEVIHLHYDDISRTNMQIHVRDTKNRMDRYTILSERNLALLT 176 Query: 247 MTPIGKETFFINNDKQKMNATQFS-----IWFKAKATKAGV-NKSAHGVRKFSATISADA 300 K + + + A+ AG+ + H +R AT + Sbjct: 177 EYWFRKGRPKGILFPNQFTGQYLTVSTLEQVIRRSASAAGLSGVTPHCLRHSFATHLMEQ 236 Query: 301 GATAHELMATYGWKTVDQAETYTKGADR 328 G + A G + E Y +++ Sbjct: 237 GVEQRNIQALLGHRDPKSTEVYLHVSNK 264 >gi|308174996|ref|YP_003921701.1| Tyrosine recombinase xerC [Bacillus amyloliquefaciens DSM 7] gi|307607860|emb|CBI44231.1| Tyrosine recombinase xerC [Bacillus amyloliquefaciens DSM 7] Length = 385 Score = 105 bits (263), Expect = 8e-21, Method: Composition-based stats. Identities = 46/366 (12%), Positives = 103/366 (28%), Gaps = 51/366 (13%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFI--PAYMSALTGSTPKREYINSPRKKPTTL 71 + +G Y R R + F A EY ++ Sbjct: 5 RKHSNGTWEYRIRYKDKNSNRYKETSKRGFKTKKEAQLAAAQIETDIEYYGFANDGKESI 64 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK--H 128 + S++ + ++ + E I+ + G+ + I+ + + + + Sbjct: 65 REYFSKWLEVYKKPNVKPITYSLQERNVRLNILPRWGEVKLKDISRTEYQKWINELRLNY 124 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYV-AINPCLSVERPKRKT-----------EGIRPWTK 176 + + + + M AV + + NP ++ PK + + + Sbjct: 125 SEGTVRRIHSLMNTALNDAVHEFRILRENPVTRIKIPKETKNNKEIKFFTVDQLEKFLNQ 184 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-------------- 222 Q S + Q + F + +GLR ++ + Sbjct: 185 VKEPQKNSKYKHSIQYYVLFSLMARTGLRIGEALALTWNDIDFEEGTIKVSKTLVYPTNS 244 Query: 223 ------------------SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264 I T + + + +K G + F +D + + Sbjct: 245 TPYLSTPKSKAGLRIIKLDIHTIQLLKKHRINRNEVVLKYKNYKKPGADIVFYQHDGRWL 304 Query: 265 NATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETY 322 +FK +A + S H +R A +A A + G ++ A+TY Sbjct: 305 RTNVVREYFKEICKRAELPILSPHALRHSHAVHLIEAKADLKFVSERLGHSSIKITADTY 364 Query: 323 TKGADR 328 + Sbjct: 365 LHVTKK 370 >gi|268608336|ref|ZP_06142063.1| hypothetical protein RflaF_02413 [Ruminococcus flavefaciens FD-1] Length = 396 Score = 105 bits (263), Expect = 8e-21, Method: Composition-based stats. Identities = 53/329 (16%), Positives = 106/329 (32%), Gaps = 57/329 (17%) Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRS 121 + + L E+ ++ +L + +E +I G KIT + I++ Sbjct: 63 KTSAMKFQELAEEWFENYAKNALRSTT---YERMLQLRGRIYPALGHMRMDKITPRQIQA 119 Query: 122 GVESRKH-----------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170 V S P + L+ + +F +AV+ V NPC V PK Sbjct: 120 FVNSLSREGANERTGKPLAPKTIRHNLSFVSDVFSYAVKMGVVNDNPCTKVTLPKNNQAE 179 Query: 171 IRPWTKEDMQQFKSF-WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF------- 222 + +T E +Q+F S +E + R F +++SG R + + + Sbjct: 180 KKIYTPEQVQRFLSLLNNEPLKYRTFFNLMIFSGFRRGEMLGLEWKDVDFENNIISVRRT 239 Query: 223 ----------SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272 + T+ + T++ P M +L ++ + + + A + Sbjct: 240 SNYTGRKGTYTDTTKTKKSQRTLKFPQEIMDMLREYKDEQDMQALKCGDKWVEADRLYTK 299 Query: 273 FK--------------AKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD 317 +K K + H R A++ + G + G TV Sbjct: 300 WKGLPMQNGTPYFWLGEFCEKHDLPFYGLHSFRHLFASLLVNQGVDIVTVSGALGHSTVS 359 Query: 318 QA-ETYTKGADRIRLGIKNSRRISSVVDS 345 Y + + ++S V + Sbjct: 360 TTSNIYCH------MLEEAQAKVSEAVSA 382 >gi|160903194|ref|YP_001568775.1| integrase family protein [Petrotoga mobilis SJ95] gi|160360838|gb|ABX32452.1| integrase family protein [Petrotoga mobilis SJ95] Length = 306 Score = 105 bits (263), Expect = 8e-21, Method: Composition-based stats. Identities = 34/294 (11%), Positives = 88/294 (29%), Gaps = 33/294 (11%) Query: 61 INSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119 + K ++ ISE+ + A ++ ++ + +T Sbjct: 7 TSDSIKDKDKIEGYISEFLSYLKFVKRRADSTIYEYKKILKSYKKF---VQIYGLTRGCF 63 Query: 120 RSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 +E + + + + ++ + ++ K ++ + T+ Sbjct: 64 LKYLEEISNLSQRTIKLRIVVLKSFLNYLYENGEISGKKYWKDANAKIPSDVPKGLTESQ 123 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS---IKTQKTGTIITV 235 ++ F E + + LL +GLR S++ + + + K + + Sbjct: 124 IKVF-FSVIEDKFDKTFYSLLLKTGLRISEALWLEKEQIIFYNDHAELVINGKGNRVRYL 182 Query: 236 ELPDGFMKLLAMTPIGK--------ETFFINNDKQKMNATQFSIWFKAKATKAG------ 281 ++ + + L + F N++ + + FK KA Sbjct: 183 KISKQYAEQLITFAEKNTPKGAQGKKYIFSNDNDVPITSRTMERRFKDYVIKANNKIDQL 242 Query: 282 ----------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 +N + H +R A ++G E+ G T+ Y + Sbjct: 243 RTKGYNNINYINATPHALRHTCAKRLLNSGKNLEEVRYILGHTTISTTGIYVRS 296 >gi|269926673|ref|YP_003323296.1| integrase family protein [Thermobaculum terrenum ATCC BAA-798] gi|269790333|gb|ACZ42474.1| integrase family protein [Thermobaculum terrenum ATCC BAA-798] Length = 357 Score = 105 bits (263), Expect = 8e-21, Method: Composition-based stats. Identities = 54/356 (15%), Positives = 101/356 (28%), Gaps = 34/356 (9%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 R R G+ + GRRI L + R + TL+ Sbjct: 11 YRRRDGRWVAAV-VHAGRRISRYAKTRREAQKQLRELLEAAAEHRLVPPN----KLTLEQ 65 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT-PS 131 ++E+ + L V++R++++ + I G + + + + P Sbjct: 66 YLAEWLE-VRSRELRVSTRVNYQRLIEQHICPALGGRRLQALAALELSRWLAGLGERLPR 124 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 A + + AVR +A NP VE PK + D E + Sbjct: 125 RAQEAYALLHKALADAVRLGLLATNPLDRVEPPKHQRRRP-TLPARDQIALLIAALEAGK 183 Query: 192 PRLAFEFLLY---SGLRCSDSCRAGVQHLQNNI----------------FSIKTQKTGTI 232 E LL+ SG R ++ + + Sbjct: 184 AGWYSELLLFLLGSGCRIGEALGLEWGDVDWQEGSVRISRQLLEVGGEVHESPPKSRAGE 243 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA--TQFSIWFKAKATKAGVNK-SAHGV 289 + LP ++ L K + A + G+ + H + Sbjct: 244 RVIALPAFALEALRQQRAKKLGKYCFLSSTGTTPCRRNVLRALHAVCAELGLPRLRIHDL 303 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVD 344 R A++ A AG + G + + Y D + + R+ V+ Sbjct: 304 RHVHASLLAHAGVPPKVAQSRLGHSSPMVTLQVYQHVLDGA--DREAALRLERVLG 357 >gi|241662627|ref|YP_002980987.1| integrase family protein [Ralstonia pickettii 12D] gi|240864654|gb|ACS62315.1| integrase family protein [Ralstonia pickettii 12D] Length = 412 Score = 105 bits (263), Expect = 8e-21, Method: Composition-based stats. Identities = 44/328 (13%), Positives = 92/328 (28%), Gaps = 25/328 (7%) Query: 20 KIIYYFRKGHGR--RIRLPYPHESTFIPAYMSALTGSTPK-----REYINSPRKKPTTLK 72 + +RK + + RI++ + T A A+ + + R+ T Sbjct: 51 RTFVLYRKVNRKPERIKIGRYPDLTVEKARTQAMALNGEIATGTNPAELKRIRRAEMTFG 110 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRK------SGDFDYRKITTKHIRSGVESR 126 L +Y K+ + + + FDQ + I+ I Sbjct: 111 DLFDQYYKNHSLPNKK--TSDEDKQKFDQYLSSNRDGVNLASRQLSAISKADIAQLFGKI 168 Query: 127 KHTPS-SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 +A + L + +F A+ R R+ R +++ +F Sbjct: 169 SMEHKITANRVLALVSSIFGKAIEWGIWNQMNPCQGIRRNRENSRDRFLHPDELPKFFEH 228 Query: 186 W--SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP-DGFM 242 + R L +G R S+ + + + +T +P Sbjct: 229 VLAYPNATLRDYMLVSLLTGARRSNVLAMRWEDVNLERAEWRIHETKNGTPQSVPLVPDA 288 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQ-----FSIWFKAKATKAGV-NKSAHGVRKFSATI 296 L + +K T+AG+ + H +R+ + Sbjct: 289 VALLRNRQEMPECEDSPFVFPGTGKSGHLVEPKKAWKIVLTQAGIKDLRLHDLRRTMGSW 348 Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324 A GA + + K+ Y + Sbjct: 349 QAGTGANLSVIGRSLNHKSTATTAIYAR 376 >gi|324020550|gb|EGB89769.1| site-specific recombinase, phage integrase family [Escherichia coli MS 117-3] Length = 336 Score = 105 bits (263), Expect = 8e-21, Method: Composition-based stats. Identities = 42/307 (13%), Positives = 97/307 (31%), Gaps = 23/307 (7%) Query: 26 RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85 R G+RIR A+ + ++E+ R TL L+ + K H Sbjct: 28 RGRDGKRIR-RKFERKAEALAFERYTIANASQKEWGGQ-RADRRTLTELLDIWWK-YHGQ 84 Query: 86 SLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTS 139 + ++ F+ +++ GD ++ + + R + ++ + + Sbjct: 85 NHEHGTKE-----FNHLLKTISGIGDIPVSRMNKRALMDYRSMRLRDGISAATINRDMYR 139 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199 + +F ++ + + + P + + ++ + G L Sbjct: 140 LSGMFTKLIQLDEFSGQHPIHGLPPLTEANPEMTFLEKAEIEKLLNVLTG-DDLLVALLC 198 Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259 L +G R ++ + + + K G TV ++ K + Sbjct: 199 LSTGGRWTEVATLKPAQITSCRVTFLKTKNGKKRTVP--------ISEELEKKVKEEASA 250 Query: 260 DKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 K++ +F + N++ H +R A+ G L G ++ Q Sbjct: 251 KLFKVDYEKFCGILRRVKPDIPPNQATHILRHTFASHFMMNGGNIIALQQILGHASIQQT 310 Query: 320 ETYTKGA 326 TY A Sbjct: 311 MTYAHLA 317 >gi|227889876|ref|ZP_04007681.1| phage integrase/recombinase [Lactobacillus johnsonii ATCC 33200] gi|227849567|gb|EEJ59653.1| phage integrase/recombinase [Lactobacillus johnsonii ATCC 33200] Length = 322 Score = 105 bits (263), Expect = 8e-21, Method: Composition-based stats. Identities = 34/274 (12%), Positives = 86/274 (31%), Gaps = 14/274 (5%) Query: 62 NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121 PRK+ + K ++++ ++ + + + +Q++ K R++TT+ +R Sbjct: 35 REPRKRKISNKEYLAKFLEAKKMEGCSDRTIKYYRVTVEQLLNKV-VRPVRRVTTEEMRE 93 Query: 122 GVESRK----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 + + ++ ++ F W ++Y+ +P + + + + T E Sbjct: 94 YLVDYQKINNCGKTTVDNIRRNISSFFSWLEEEDYILKSPMRRIHKIRAEKLVKNVITDE 153 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236 D+++ + + L +G+R + R + + V Sbjct: 154 DIEK-LRDGCSCLRDVAMIDLLYSTGIRVGELVRLNKTDINFSERECVVFGKGDKERRVY 212 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNAT------QFSIWFKAKATKAGVNK-SAHGV 289 L + I + K +++ H Sbjct: 213 FDAKSKVHLINYLKSRTDDNPALFVSLDRPNDRLKISGVEIRLRQLGRKLHLDRIHPHKF 272 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323 R+ AT + D G ++ G +D Y Sbjct: 273 RRSMATRAIDKGMPIEQVQKILGHSQIDTTMQYA 306 >gi|153815667|ref|ZP_01968335.1| hypothetical protein RUMTOR_01903 [Ruminococcus torques ATCC 27756] gi|145846908|gb|EDK23826.1| hypothetical protein RUMTOR_01903 [Ruminococcus torques ATCC 27756] Length = 376 Score = 105 bits (263), Expect = 8e-21, Method: Composition-based stats. Identities = 45/348 (12%), Positives = 107/348 (30%), Gaps = 41/348 (11%) Query: 19 GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78 G F G+R + + + + +T E+ + + + Sbjct: 20 GLYSARFVDRFGKRKHKRF----KKLQECRAWIADATYVDEHSDISMPSDILVDQWFDYW 75 Query: 79 RKSAHWGSLAVNSRISF-ESYFDQIIRKSGDFDYRKITT---KHIRSGVESRKHTPSSAI 134 ++ N+ ++ E Y I G+ + + I + +++ S+ Sbjct: 76 IGIKK-KTVRSNTVRNYTERYIKNIKPVIGEMPLSDVKPLHCQKIFYDMADQEYRTSTIY 134 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLS-VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193 Q ++ +F++A E + NPC V+ K + D+Q+ ++E Sbjct: 135 QARIALYNMFEYAKENEVLCSNPCKKSVKSDMGKPSEKKVALTRDIQKTFLQYAENQSYE 194 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG------------- 240 + F+L +GLR + + + +I+ +++ Sbjct: 195 NQYRFILQTGLRTGELVGLKWEDVDFKSKTIQIRRSMEYRYSAKEWRIGEPKSKSGYRTI 254 Query: 241 ----------------FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284 ++ ++ +E F+ + + + KA + + Sbjct: 255 PLTEEAVAILKKQKEKNKRISEISTEWEEFVFLCRKGTPVKNSTYDTALFKICDKAKIPR 314 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330 S H +R AT +AG L G + Y + + Sbjct: 315 FSMHILRHTFATRCIEAGMKPKTLQMLLGHSNIGITMNLYVHTTEEEK 362 >gi|126436488|ref|YP_001072179.1| phage integrase family protein [Mycobacterium sp. JLS] gi|126236288|gb|ABN99688.1| phage integrase family protein [Mycobacterium sp. JLS] Length = 387 Score = 105 bits (263), Expect = 8e-21, Method: Composition-based stats. Identities = 52/366 (14%), Positives = 110/366 (30%), Gaps = 41/366 (11%) Query: 18 HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGST-----------PKREYINSPRK 66 G+ + L + ++ A P E + Sbjct: 25 SGRWQASYLHNGAVYKALATFPTKSSAGHWLQAEEDLIDLDRRRPGEWTPPAERAARRQA 84 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVES 125 + TL+ + + LA +R ++ + + I+ GD +IT +H+R+ Sbjct: 85 EKLTLRTYAKTWLDNK--TKLARRTRDNYRGHLDNHILPVLGDLGLAEITPEHVRTWFAG 142 Query: 126 RKHTPSSAI-QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + Q + +F AV + + NPC + K + Q + Sbjct: 143 LGTEHDTRNAQAYAILNGVFNTAVADDLIERNPCRIKGAAQVKHAKRSVVLLDAAQLTEL 202 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 + RLA + LR + + + +++ ++ T + G K Sbjct: 203 AAAMPDDARLAVLLAGWCALRKGEVFALRRCDIAADGSTVRIERAVTYREGKFEVGPTKT 262 Query: 245 LAMTPIGKETFFINNDKQKMNATQ-----------------------FSIWFKAKATKAG 281 + + A F ++A G Sbjct: 263 RESRRVVSVPPHVRPAVVDHLARHVGEGDEALVFTEPSTGSFAGEKRFRTAWEAAREAIG 322 Query: 282 VN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 H +R ++A AGAT E+M G + + A Y A+ + + ++S Sbjct: 323 QPQLHFHDLRHAGGVMAAQAGATLREVMDRLGHTSPNMAMRYQHTAEGRAAAL--ADKLS 380 Query: 341 SVVDSD 346 ++ ++ Sbjct: 381 ALAATN 386 >gi|268610890|ref|ZP_06144617.1| phage integrase family protein [Ruminococcus flavefaciens FD-1] Length = 347 Score = 105 bits (263), Expect = 8e-21, Method: Composition-based stats. Identities = 40/341 (11%), Positives = 88/341 (25%), Gaps = 26/341 (7%) Query: 11 VTKERTRHGKIIYYF---RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67 + ++ G +G+RI + A+ +T Sbjct: 1 MKAKKLPSGNYRVQVVAGHDENGKRIVKSFTASEE-----WEAIKLATDFACRREQNYDN 55 Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--S 125 T+ + Y S L + + + + R I I+ + + Sbjct: 56 NMTVAQAMEMYIDSRR-NVLEETTIRDYNQVLKYRFKTLMNVKVRDIKPIQIQRAINLEA 114 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 K +P + ++ + K + + PK + + + E++ Sbjct: 115 EKVSPKTVKNAYGLLKSVLKMFNADINLNSV-----KLPKLRKKEKELPSFEEVFTIVKG 169 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRA---GVQHLQNNIFSIKTQKTGTIITVELPDGFM 242 LA L G R + + I+T + + + Sbjct: 170 TEIELPVLLAAWLSLRIGEVIGLQFRDIDKETRRISIRRTVIRTDEGLKVREGCKTEKSQ 229 Query: 243 K------LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296 + + + E + + F + + + H +R +A+I Sbjct: 230 RQLELPNYIFDMIMAIEHDSDEDFIVPLTRKALYSRFTRLMKRNDIKMTFHDLRHLNASI 289 Query: 297 SADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNS 336 G M GW T + Y + R I Sbjct: 290 MLMLGVPDKYAMERGGWSTDSILKSVYQQTFSSERKKIDKM 330 >gi|187734150|ref|YP_001880474.1| integrase [Shigella boydii CDC 3083-94] gi|187431142|gb|ACD10416.1| integrase [Shigella boydii CDC 3083-94] Length = 375 Score = 105 bits (263), Expect = 8e-21, Method: Composition-based stats. Identities = 45/304 (14%), Positives = 91/304 (29%), Gaps = 18/304 (5%) Query: 28 GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87 G+RIR + Y + E+ + + L LI + K Sbjct: 69 RKGKRIR-KKFKTKSDAVLYERWVLAQQHNNEWKGNSIDRRP-LSVLIDLWWKYHGQLMK 126 Query: 88 A-VNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMRVL 143 + N+ ++ D K+ T + R + PS+ + + ++ + Sbjct: 127 SGHNT----RLKLLRLSEAMDDPCVHKLNTTMLTELRVSRIEQGIQPSTINREIGALSAM 182 Query: 144 FK-WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202 F ++ NP ++ K K + +K + Q +E RLA E LL + Sbjct: 183 FTALISSGHFLNDNPVQGLKGMKVKEREMGYLSKSECVQLLDALAENPDERLAVEILLST 242 Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262 G R + + + + + K TV + + + + ++ Sbjct: 243 GARWGEVAALEQRRVLHCRITFSKTKNSKNRTVPISESLFEKIKKRGGKLVFPTLD---- 298 Query: 263 KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 + K A ++ H + A+ G L G + Y Sbjct: 299 ---YSLVRDVIKTVAPDVPDGQAVHALHHTFASHFMMNGGNILTLQKILGHAKIQTTMIY 355 Query: 323 TKGA 326 A Sbjct: 356 AHLA 359 >gi|15808708|gb|AAL08437.1|AF326777_12 Tn21 integrase IntI1 [Shigella flexneri 2a] Length = 337 Score = 105 bits (263), Expect = 8e-21, Method: Composition-based stats. Identities = 35/303 (11%), Positives = 84/303 (27%), Gaps = 52/303 (17%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132 ++ + R+ + ++ + ++ + IR G + + + + + + S Sbjct: 16 VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 ++ L + + + + RP+ T +++ + + Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVV--RIHGILEGEH 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230 RL + L +G+R S+ + V+ L + +I ++ Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193 Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265 + + A + + M Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253 Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 F FK +AG+ K + H +R AT +G + G V YT Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313 Query: 324 KGA 326 Sbjct: 314 HVL 316 >gi|319744173|gb|EFV96543.1| phage integrase family integrase/recombinase [Streptococcus agalactiae ATCC 13813] Length = 328 Score = 105 bits (262), Expect = 9e-21, Method: Composition-based stats. Identities = 31/262 (11%), Positives = 81/262 (30%), Gaps = 14/262 (5%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESRKHT 129 L+ + + + S ++ ++++ + D R+I+T +R + + R+ + Sbjct: 53 LLHLFISAKRIEGCSEKSLKYYKMVIEKMVAEL-DKPIRQISTSDLRTYLANYQKERQSS 111 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + F W ++Y+ +P + + K + E ++ + Sbjct: 112 KVTIDNMRRIFSSFFSWLEDEDYILKSPVRRIHKIKTDKVIKETLSDESLEL-LRDTCDN 170 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKLLAMT 248 + + L +G+R + R + + + K + V L Sbjct: 171 IRDLAMIDLLASTGMRVGELVRLNREDINFHERECLVFGKGNSERIVYFDARTKIHLINY 230 Query: 249 PIGKETFFIN------NDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAG 301 ++ ++ + +A + H R+ AT + D G Sbjct: 231 LDSRKDDSSALFVSLAYPYDRLMIGGVETRLREIGKRANLQKVHPHKFRRTLATRAIDKG 290 Query: 302 ATAHELMATYGWKTVDQAETYT 323 ++ G +D Y Sbjct: 291 MPIEQVQHLLGHVKIDTTMHYA 312 >gi|328542282|ref|YP_004302391.1| Integrase family protein [Polymorphum gilvum SL003B-26A1] gi|326412031|gb|ADZ69094.1| Integrase family protein [Polymorphum gilvum SL003B-26A1] Length = 376 Score = 105 bits (262), Expect = 9e-21, Method: Composition-based stats. Identities = 48/357 (13%), Positives = 102/357 (28%), Gaps = 42/357 (11%) Query: 12 TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 +E + R + + +G TL Sbjct: 6 KREGKKGPSYRVMVRMKGFPMQVKTFKRLTDAKQWAQDTESGIRKGEVKNVVRTAATKTL 65 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---- 127 + +I +RK + A +++ + S+ + G + IT + + Sbjct: 66 QDVIDRFRKEV-FIHRAESTKRAEGSFLAYWEKALGSYALAYITADMVSEKMAELAAAGD 124 Query: 128 --------------------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167 + + + ++ VLFK+A++ + A +P V R + Sbjct: 125 GRRKADEDAEADKPKAAPKPKSRKTLKHYRDTLAVLFKYAIQWGWTASSPLDGVNRITKI 184 Query: 168 TEGI-RPWTKEDMQQFKSFWSEGSQPRLAFE--FLLYSGLRCSDSCRAGVQHLQNNIFSI 224 R + E+ ++ L F L +G R S+ + L + Sbjct: 185 RNERTRYLSDEERKRLLDACKASDNEHLYPVVVFALSTGARKSEILGLTLDDLDLTRDTA 244 Query: 225 --KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT-----------QFSI 271 + K G V + LL F+ + Sbjct: 245 ILRDTKNGDTRAVPVVHHLRDLLEDQVETVNRFYDELEPPADTRWLFPRRDGQEPIDIRK 304 Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 ++ A + + H +R +A+ A GA+ E+ G +T+ Y ++ Sbjct: 305 AWENARDAAKINDFRFHDLRHSTASYLAMNGASLVEIAEILGHRTLQMVRRYAHLSE 361 >gi|83310003|ref|YP_420267.1| integrase [Magnetospirillum magneticum AMB-1] gi|82944844|dbj|BAE49708.1| Integrase [Magnetospirillum magneticum AMB-1] Length = 359 Score = 105 bits (262), Expect = 9e-21, Method: Composition-based stats. Identities = 44/331 (13%), Positives = 94/331 (28%), Gaps = 23/331 (6%) Query: 13 KERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 K +GKI + R+ + + + + + + + TT Sbjct: 16 KRVGTNGKISWQARVRRKGFPDM-FKTFRTKVEAQKWAAVTESEMARHVFTDRSLAERTT 74 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT- 129 L + YR + + + + + ++ V +K T Sbjct: 75 LGDALEVYRDEVTVE--KAGHQEGY-VIKAWLKHPLSKRTLSSLKVRDFQAWVTEKKATV 131 Query: 130 -PSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQF---- 182 P + + + L+ + NP L + P R + Sbjct: 132 GPKTIRLHIGVISNLYNRLENLLEIEALPNPVLKLILPPLPEGRDRRLNVIEHDDGTVRN 191 Query: 183 -------KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 + R A EF L +R ++ + +H+ N ++ T V Sbjct: 192 EAEALIGACADAVNPWIRPAVEFALDGAMRRNEIVQMRWEHVDLNAGMVRLPAAITKTGV 251 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSA 294 + + I+ + A F +AG++ H +R +A Sbjct: 252 SRDVALSPA-GVQVLRTLPRSIDGRVFPLTADALYRAFVRARKRAGLDDLHFHDLRHEAA 310 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKG 325 + + G E+ + G KT+ + Y Sbjct: 311 SRLREEGLDLMEIASITGHKTLQMLKRYVHV 341 >gi|320353450|ref|YP_004194789.1| integrase family protein [Desulfobulbus propionicus DSM 2032] gi|320121952|gb|ADW17498.1| integrase family protein [Desulfobulbus propionicus DSM 2032] Length = 357 Score = 105 bits (262), Expect = 9e-21, Method: Composition-based stats. Identities = 45/325 (13%), Positives = 93/325 (28%), Gaps = 17/325 (5%) Query: 36 PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF 95 E AL + + L +EY + A + + Sbjct: 22 GNKKERKCFATKKDALLWEAERPTEPAEQKTLTVCLLDWATEYLRHAE-QNFTGKTFDEK 80 Query: 96 ESYFDQIIRKSGDFD---YRKITTKHIRSGVESRK--HTPSSAIQFLTSMRVLFKWAVRQ 150 F Q+ G ++T ++ ++ + + ++A + ++ + W V+ Sbjct: 81 RIAFRQLFACPGINPKESANRLTALQVQKALQRQSVSRSGNAANKDRKNLSAAWSWGVKF 140 Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210 + I+ S R D E Q +L L +G R + Sbjct: 141 LDLPIDNPFSKVEKFASERVERYVPTLDDFWKIFHIIEDDQDKLMLYCYLQTGARRDELF 200 Query: 211 RAGVQHLQNNI------FSIKTQKTGTIITVELPDGFMKLL--AMTPIGKETFFINNDKQ 262 R + + + + D ++ L + +Q Sbjct: 201 RLTWADVDFFRKRIRLSWRKNKVGEWRSQWLSVKDDLVEWLLRHRKKSCDIKEHVFIREQ 260 Query: 263 KMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321 K++ W K KAGV HG+R A+I A E+ ++ + Sbjct: 261 KLSYQYRQHWLKRLCKKAGVKPFGFHGIRHLFASILAAQNVPLVEIQYMLRHTSLATTQR 320 Query: 322 YTKGADRIRLGIKNSRRISSVVDSD 346 Y + + + + DS+ Sbjct: 321 YIHRL--KKENREVLAALPGLKDSE 343 >gi|301300085|ref|ZP_07206303.1| site-specific recombinase, phage integrase family [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852317|gb|EFK79983.1| site-specific recombinase, phage integrase family [Lactobacillus salivarius ACS-116-V-Col5a] Length = 373 Score = 105 bits (262), Expect = 9e-21, Method: Composition-based stats. Identities = 33/359 (9%), Positives = 97/359 (27%), Gaps = 35/359 (9%) Query: 17 RHGKIIY----YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 + GK ++ G + Y + L + + + Sbjct: 6 KRGKTYRATVSWYEDGVRKFKSKSGFKTKREAQIYANELENLKARNFISQNSKTP---FP 62 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTP 130 + ++ S++ +++++++ F+ + + ++ + R + + H Sbjct: 63 EYFWSWFETYKESSVSERTKLTYKNAFNVLKKHLSGIPIEEMDRRLYRKFIAEFGKDHAK 122 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP------WTKEDMQQFKS 184 S+ +F + K A+ V + + + + + TK+ Sbjct: 123 STVSKFNSLYHACVKDAMYDGDVTKDFIAGTDIVYNRKKTRKIDYLNIEETKKLTNYLTD 182 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------------ 232 + + + +G R + + + N +I K+ Sbjct: 183 TLNHNFTAKYMILLAIATGARLGEMQALTWKDINFNFHTIDINKSWNETTKKFQPTKNES 242 Query: 233 --ITVELPDGFMKLLAM-TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SA 286 + + + L + FIN ++ + + + G++K Sbjct: 243 SKRIIRVNQNTLDYLQDLKQNNHDMVFINQYNTIPTSSAVNKTLRMCLKELGIDKPSFHF 302 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKGADR-IRLGIKNSRRISSVV 343 H +R + + G + Y+ D I + Sbjct: 303 HSLRHTHVAYLLSENIDLYIISKRLGHSDISTTSRVYSYLIDEYKNRADNKIENIVDKL 361 >gi|218130593|ref|ZP_03459397.1| hypothetical protein BACEGG_02182 [Bacteroides eggerthii DSM 20697] gi|217986937|gb|EEC53268.1| hypothetical protein BACEGG_02182 [Bacteroides eggerthii DSM 20697] Length = 409 Score = 105 bits (262), Expect = 9e-21, Method: Composition-based stats. Identities = 40/300 (13%), Positives = 88/300 (29%), Gaps = 26/300 (8%) Query: 54 STPKREYINSPRKKPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKSG--- 107 +T +E + TL L + + ++ + ++ +++ Sbjct: 93 ATAVKEAFQGSKDTQMTLLKLFDRHIEEIRARVGIDVSHRTLPNYLYTRNRLADFVSSRF 152 Query: 108 ---DFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 D + ++ + IR E + + +L ++ + + A ++ Y Sbjct: 153 KVSDLAFCQLNEQFIREFQEYVVIEKGLGVQTVRHYLAILKKICRIAFKEGYSDKYYFEH 212 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-----RLAFEFLLYSGLRCSDSCRAGVQ 215 + PK K R +KED ++ + G +P R F F Y+G D + Sbjct: 213 YKLPKLKETAPRALSKEDFEKIRDIELTGCRPEHSIVRDMFLFACYAGTSYVDVVAITLD 272 Query: 216 HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT---PIGKETFFINNDKQKMNATQFSIW 272 +L + K +KLL + Sbjct: 273 NLSRDDNGALWLKY--RRGKNGQLSRVKLLPEAVALIEKYRDDTRPTLFPVIPYQALKWC 330 Query: 273 FKAKATKAGVNKSA--HGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + K G+ H R +T+ + G + G + + Y + + Sbjct: 331 LTSIKMKVGIKGRLSYHMGRHSFSTLMTLENGVPIETVSKMLGHADIRTTQVYARVTPKK 390 >gi|158321643|ref|YP_001514150.1| integrase family protein [Alkaliphilus oremlandii OhILAs] gi|158141842|gb|ABW20154.1| integrase family protein [Alkaliphilus oremlandii OhILAs] Length = 286 Score = 105 bits (262), Expect = 9e-21, Method: Composition-based stats. Identities = 33/284 (11%), Positives = 87/284 (30%), Gaps = 21/284 (7%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESRKH 128 ++ + + + + ++ R + +I++ + + K Sbjct: 6 VVENFLRYLESIDRSKETIKGYKKELGYFGRFLEKKYGFEKEMEQISSVDLEDYMYYLKK 65 Query: 129 TP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + ++ + + R L+K++ ++E N + +E K K ++E+ Sbjct: 66 SGKKSATRSRVVYIFRSLYKYSYKRELCTKNLAIFLESVKVKQTERDYLSEEEFIL-LIQ 124 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMK 243 S + A + + Y+GLR S++ ++++ I + K + + + Sbjct: 125 KINSSIVKAAVQTIFYTGLRVSEALNLTMENVKLDEKIIYTISGKGDKDRIIPISNKLYY 184 Query: 244 LLAMTPIGKETFFINNDKQKM------NATQFSIWFKAKATKAGVNK--SAHGVRKFSAT 295 +L +N + + K SAH +R A+ Sbjct: 185 ILDDYVKNIRPDVESNKFFCTKKTGSLSPQYINRMLHIAKDSLNWEKNISAHILRHSFAS 244 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 A + G + Y +R + + Sbjct: 245 NLILQNAPLPAVQKLLGHSDLRVTSRYIH--QDLRQLEEAVNLL 286 >gi|312174392|emb|CBX82639.1| Tyrosine recombinase xerD [Erwinia amylovora ATCC BAA-2158] Length = 346 Score = 105 bits (262), Expect = 9e-21, Method: Composition-based stats. Identities = 48/314 (15%), Positives = 92/314 (29%), Gaps = 35/314 (11%) Query: 55 TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRIS-----FESYFDQIIRKSGDF 109 P P +L L+ + K + + + + + + G + Sbjct: 15 DDIYRQPAGPAHDPKSLYALLLRFVKWRRERNWSETTLKTQTHHGYRFIC--WAAERGLY 72 Query: 110 DYRKITTKHIRSGVESRKH---------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 IT + T + L ++V F W +Q + NP Sbjct: 73 HAADITRPVLERYQRWLYQYRKTNGEALTSRTQRTTLQPLQVWFSWMAKQGLILANPAAD 132 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSE-----GSQPRLAFEFLLYSGLRCSDSCRAGVQ 215 +E P+ + R + + + G + R E L +G+R + R Sbjct: 133 LELPRLEKHLPRTILSVEQVEEVLNLCDLSTLQGMRDRALLELLWSTGIRRGEVARLETY 192 Query: 216 --HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--------- 264 I +I K + + + + L + + K Sbjct: 193 SADFSRKILTIVQGKGKQDRVIPVGERALCWLRHYLHQVRPEVLVSPDCKALFLAMDGVA 252 Query: 265 --NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321 A + AG+ K S H R AT + GA + A G ++V+ + Sbjct: 253 GLTANGITHAVVPYLRAAGIEKGSCHLFRHAMATQMLENGADLRWIQAMLGHRSVESTQI 312 Query: 322 YTKGADRIRLGIKN 335 YT+ + R + Sbjct: 313 YTQVSIRALQAVHA 326 >gi|308068307|ref|YP_003869912.1| Integrase [Paenibacillus polymyxa E681] gi|305857586|gb|ADM69374.1| Integrase [Paenibacillus polymyxa E681] Length = 375 Score = 105 bits (262), Expect = 9e-21, Method: Composition-based stats. Identities = 57/376 (15%), Positives = 119/376 (31%), Gaps = 47/376 (12%) Query: 9 PFVTKERTRHGKII-YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67 PFV ++ + + YY G R+IR M L +EYI RK Sbjct: 4 PFVNEKTKKWDFVFGYYDETGKRRQIRRKGFKTKREANDKMIELQNDVKNKEYI---RKD 60 Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR 126 TTL + + + + + + YF I K G + ++ V Sbjct: 61 NTTLNEFMDYWLDNIRVHECGETTLYNNKLYFKNHIKPKLGKIKLQNFDLLKCQNFVNEL 120 Query: 127 KHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 ++ + T ++ +F A+ ++ NP V PKR + + WT E + F Sbjct: 121 YKKNFARNTIDRITTMVKKVFDKAIEYGFIKENPMRKVTLPKRVKKEMSIWTLEQVNHFL 180 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------------ 231 E + + L +G+R + + + +I ++T Sbjct: 181 QCTKED-RYHCVYGLALLAGMRQGEILGLRWKDIDFKSKTITIKQTLAHYGTRIKSGAKT 239 Query: 232 ---IITVELPDGFMKLLAMTPIGKETFFINNDKQKMN-------------------ATQF 269 + +P+ + +L E + + ++ + Sbjct: 240 TAGERKISIPNQLIAILEEQRRLHEVYKVKWKREFGDAFIDMDIVIFNLKNGKTVFPANL 299 Query: 270 SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD 327 S +K A + H +R AT+ + + G + +TY+ Sbjct: 300 SKAYKKDVISAKLPHIRFHDMRHTHATMLLEKKMNVKVISERLGHSKISVTLDTYSHVLP 359 Query: 328 RIRLGIKNSRRISSVV 343 + + + + ++ Sbjct: 360 S--MQQEVADELEQMI 373 >gi|239817469|ref|YP_002946379.1| integrase family protein [Variovorax paradoxus S110] gi|239804046|gb|ACS21113.1| integrase family protein [Variovorax paradoxus S110] Length = 290 Score = 105 bits (262), Expect = 9e-21, Method: Composition-based stats. Identities = 36/286 (12%), Positives = 84/286 (29%), Gaps = 24/286 (8%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV---ESRKHTP 130 L L ++ ++ + T + +R R +P Sbjct: 11 LRQRLLDDMRMRKLGPQTQSAYVRAVRYLASFL-QRSPDTATAEDLRRFQLHLVDRGVSP 69 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 + +T ++ F +R+ + + ++++ + + Sbjct: 70 ITLNATITGLKFFFDVTLRRGEL----VERMSYVHVPQTLPVVLSRDEAAR-LIAAATNP 124 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMT 248 + A +GLR S+ V + + +++ K L ++ L Sbjct: 125 KYHTALSIAYGTGLRVSEIVALKVGDIDSERMTLRVEQGKGRKDRYAMLSPVLLERLRAW 184 Query: 249 PIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296 F N + A Q + A A ++K + H +R AT Sbjct: 185 WRYANAKGKMLPNGWLFPGQNPVDPLTARQLNRAVHDAAAAAKIDKRVTMHTLRHSFATH 244 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSRRISS 341 + + G K ++ YT A + +R + ++S+ Sbjct: 245 LLEQKVDIRVIQVMLGHKKLETTSVYTHVATEVLREVVSPLEKLSA 290 >gi|254438184|ref|ZP_05051678.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 307] gi|198253630|gb|EDY77944.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 307] Length = 419 Score = 105 bits (262), Expect = 9e-21, Method: Composition-based stats. Identities = 48/354 (13%), Positives = 94/354 (26%), Gaps = 43/354 (12%) Query: 24 YFRKGHGRRIRLPY------PHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77 Y G RR+ + + S R+ P K LI Sbjct: 49 YRHAGRQRRMTIGRWPEWSTTSARDRAKELRREIDAGGDPLGQKESGREAPR-FKDLIER 107 Query: 78 YRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESR---------- 126 Y + H L+ + +S ++ + + +IT + + Sbjct: 108 YIE-VHLPHLSPTNASDQKSMLAKLVAPEWSNRLVTEITPYDVEKLLNKVAAGRARPSKA 166 Query: 127 ------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 K TP A + +R +F +AV + NP S R + + R Sbjct: 167 KPNNRARKLQGAKPTPVRANRTGEVLRKMFTYAVGWGWREDNPASSFRR-RIENARERFL 225 Query: 175 TKEDMQQFKSFWSEGSQPRLAFEF--LLYSGLRCSDSCRAGVQHLQNNIFSIKT---QKT 229 + E++ + R A + +G R + +A H S Sbjct: 226 SHEEIHKLAEALEAAEDRRAADIIRLCMLTGARVGEVRQAQFIHFNLEHLSWSKPASMTK 285 Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA----TQFSIWFKAKATKAGVN-K 284 + + + ++ + G+ Sbjct: 286 QRKVHRLPISDEAAAIVRQRQLLVPRGCQLLFPGDVPGQPVKEIRRFWSNIQKQIGIPDV 345 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSR 337 H +R A++ GA+ + G + + Y D +R G+ Sbjct: 346 RIHDLRHTFASLLVSGGASLEMIGKLLGHSQMQTTQRYAHLMDSPLRAGVDAVA 399 >gi|86139826|ref|ZP_01058392.1| Phage integrase [Roseobacter sp. MED193] gi|85823455|gb|EAQ43664.1| Phage integrase [Roseobacter sp. MED193] Length = 419 Score = 105 bits (262), Expect = 9e-21, Method: Composition-based stats. Identities = 44/360 (12%), Positives = 99/360 (27%), Gaps = 41/360 (11%) Query: 24 YFRKGHGRRIRLPY--PHESTFIPAYMSALTGSTPKREY---INSPRKKPTTLKWLISEY 78 Y G RR +L +T + + + ++ + +I Y Sbjct: 49 YRINGRQRRYKLGAWPEWTTTAARERAKEIRRQIDEGIDPLSVRETEREAPKVSDMIDRY 108 Query: 79 RKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSGVES------------ 125 + LA + S +++ + G+ +IT + + + Sbjct: 109 IEEH-LPRLAPRNASDQISMLRKMVEPEWGNRLVTEITKQDVERFLNKVAEGRPRPSKLK 167 Query: 126 ----------RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 K TP A + +R +F A+ E+ NP + R + Sbjct: 168 PNNRARKLQGWKPTPIRANRVGQLLRKMFNLAISWEWREDNPAAGFRMRIENSRE-RFLS 226 Query: 176 KEDMQQFKSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ---KTG 230 E++ + + R A + +G R + A +H + S Sbjct: 227 HEELARLATALDHAEDQRAAGIIRMCMLTGARVGEVRTARFEHFNLDYGSWAKPADTTKQ 286 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA----TQFSIWFKAKATKAGVN-KS 285 + + + + +++ +A + Sbjct: 287 RKVHRIPISADVATIVRQRKLVVPKGSPWLFPGDTPGQPVKEIRRFWRNMQREAEIPDVR 346 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSRRISSVVD 344 H +R A++ GA+ + G + + Y D +R G+ + Sbjct: 347 IHDLRHTFASLLVSGGASLEMVGRLLGHSQMSTTQRYAHFMDSPLRAGVDAVAQAFRPRP 406 >gi|300926171|ref|ZP_07141983.1| phage integrase, SAM-like domain protein [Escherichia coli MS 182-1] gi|300417806|gb|EFK01117.1| phage integrase, SAM-like domain protein [Escherichia coli MS 182-1] Length = 356 Score = 105 bits (262), Expect = 9e-21, Method: Composition-based stats. Identities = 59/345 (17%), Positives = 109/345 (31%), Gaps = 23/345 (6%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALT---GSTPKREY 60 LPP + R+ Y G+ L A + + G K Sbjct: 9 RRDLPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLT 65 Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 TL + Y K + + I++ S I R D ITTK I Sbjct: 66 ARINSDNSVTLHSWLDRYEKILASRGIKQKTLINYISKIKAIRRGLPDASLEDITTKEIA 125 Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + + +SA +++ F+ A+ + ++ NP + K + R E Sbjct: 126 AMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEY 185 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 ++ +++ S RLA E + +G R D C + + ++ KTG I + Sbjct: 186 LKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTT 245 Query: 239 DGFMKLLAMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKAGV-----NK 284 L + ++ +++ S +F +G+ Sbjct: 246 LHVDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPP 305 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + H +R SA + + G K+ A Y R Sbjct: 306 TFHELRSLSA-RLYEKQISDKFAQHLLGHKSDTMASQYRDDRGRE 349 >gi|322433743|ref|YP_004215955.1| integrase family protein [Acidobacterium sp. MP5ACTX9] gi|321161470|gb|ADW67175.1| integrase family protein [Acidobacterium sp. MP5ACTX9] Length = 304 Score = 105 bits (262), Expect = 9e-21, Method: Composition-based stats. Identities = 34/289 (11%), Positives = 81/289 (28%), Gaps = 35/289 (12%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRK 127 + + Y+ ++ ++ ++ S +IT I + K Sbjct: 3 FEPFLEFYKN---IKKVSDDTLAAYRSDLKHFGLFLATEHVDRITQIDHALIAKFITYMK 59 Query: 128 HTP-----------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + ++ + L ++ F + ++ + + K + Sbjct: 60 ISGKGKGGKVGLSDATIARRLAAVSSFFDYTRATTGRKLHNPIEDFSNRWKRNNKPKPVE 119 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT----- 231 E + + + R+ L +GLR + + + Sbjct: 120 EVVLEKLLSAITSPRDRVLINLFLATGLRLGEMEQLNRDTIVIEQHKGNGPNECFVIGTG 179 Query: 232 ------------IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279 +++ + + + + FI+ KQ+M+ Sbjct: 180 EVEGKGGKIRTFMVSQQALIPYARYVNGRKDDHPALFISERKQRMSERAMQERLAHWCKV 239 Query: 280 AGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 AGV+ + H +R T +AG +L G +V Y K D Sbjct: 240 AGVSHTNVHRLRHTYGTRLVNAGMDILQLKELMGHSSVATTLNYAKIMD 288 >gi|149916562|ref|ZP_01905077.1| site-specific recombinase, phage integrase family protein [Roseobacter sp. AzwK-3b] gi|149809536|gb|EDM69395.1| site-specific recombinase, phage integrase family protein [Roseobacter sp. AzwK-3b] Length = 363 Score = 105 bits (262), Expect = 9e-21, Method: Composition-based stats. Identities = 51/331 (15%), Positives = 103/331 (31%), Gaps = 33/331 (9%) Query: 27 KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN----SPRKKPTTLKWLISE----Y 78 G R I+L E + A L + + + TL + + Sbjct: 23 DGKMRVIKLGRFPEISTERARALCLEHKQRISQGATVDDLTKPVRSMTLDQFYRDHFLPW 82 Query: 79 RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS---GVESRKHTPSSAIQ 135 ++ + + N + S + I G I +R ++ + P S + Sbjct: 83 YQT--YRRNSTNIVQLYRSTY-HIR--YGHRHLHTICQDDLRKLTKEMQDLGYAPGSVNR 137 Query: 136 FLTSMRVLFKWAVRQ--EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE--GSQ 191 + +R + + A + + R ++E+ + ++ + Sbjct: 138 TVVILRGMLRRADDWGYCKIHSSLQKPPNLLPDHPRHERFLSREEAHRLQAVLQRRGATP 197 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPDGFMKLLAMTP 249 LA FLLY+G R S+ A H+ + K G TV L D + +L Sbjct: 198 VNLAILFLLYTGARRSEVLNADWAHVDFARQEWRIPISKNGRPRTVILSDRAVDILEQAR 257 Query: 250 IGKETFFINNDKQKMN----------ATQFSIWFKAKATKAGV-NKSAHGVRKFSATISA 298 ++ F + +K +A + + H +R A+ Sbjct: 258 AYQQRHFGKQARSVSTVFANPQTLQPYHNIWETWKRVRAEADLTDVRLHDLRHSYASTLI 317 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRI 329 +AG + +E+ G + + Y A Sbjct: 318 NAGVSIYEVQKLLGHTNITTTQRYAHLASER 348 >gi|148455782|gb|ABQ65129.1| IntI1 [Pseudomonas aeruginosa] Length = 337 Score = 105 bits (262), Expect = 9e-21, Method: Composition-based stats. Identities = 35/303 (11%), Positives = 84/303 (27%), Gaps = 52/303 (17%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132 ++ + R+ + ++ + ++ + IR G + + + + + + S Sbjct: 16 VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 ++ L + + + + RP+ T +++ + + Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230 RL + L +G+R S+ + V+ L + +I ++ Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193 Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265 + + A + + M Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253 Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 F FK +AG+ K + H +R AT +G + G V YT Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313 Query: 324 KGA 326 Sbjct: 314 HVL 316 >gi|240169740|ref|ZP_04748399.1| hypothetical protein MkanA1_10532 [Mycobacterium kansasii ATCC 12478] Length = 373 Score = 105 bits (262), Expect = 9e-21, Method: Composition-based stats. Identities = 52/360 (14%), Positives = 100/360 (27%), Gaps = 33/360 (9%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYM---SALTGSTPKREYINSPRKKPTT 70 + G+ F G I P + + + T Sbjct: 11 RKLPSGRYQVRFTDPDGNYITAPKTFAARIDAEAWLTDRRREIDAKLWNPASVAKPDKIT 70 Query: 71 LKWLISEYRKSAHW--GSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVE-SR 126 S + + +R +++ D +I G IT K +R + Sbjct: 71 FGAYASAWLAGRQVAGRPIKQRTREHYQAILDDHLIETFGTRQLAAITPKAVREWYAVTL 130 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + P+ + +R + AV E + NPC V R + + Sbjct: 131 TNRPTMRSHAYSLLRTIMGSAVNDELIDTNPCRIVGA-GRAKRVHKIRPASVDELATLTN 189 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------------- 232 + + RL + LR ++ + + I+ ++ Sbjct: 190 AMPERLRLMVTLASWCALRFGETVELRRSDIDLSDEMIRVRRAAVRTGGGSFQVTTPKSD 249 Query: 233 -------ITVELPDGFMKLLAMTPIGKETF--FINNDKQKMNATQFSIWFKAKATKAG-V 282 I + L+ K F + + + + + A Sbjct: 250 AGVRDVAIPPHIIPQIEDHLSKYVGSKRDSLLFAAQNGGHLQPSTLTRHWYKARKAANRD 309 Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSRRISS 341 + H +R A ++A GA+ ELMA G T A Y A R R ++++ Sbjct: 310 DLRWHDLRHSGAVLAAATGASLAELMARLGHSTPQAAMRYQHAAQGRDREIAALLSKLAA 369 >gi|317152205|ref|YP_004120253.1| integrase family protein [Desulfovibrio aespoeensis Aspo-2] gi|316942456|gb|ADU61507.1| integrase family protein [Desulfovibrio aespoeensis Aspo-2] Length = 340 Score = 105 bits (262), Expect = 9e-21, Method: Composition-based stats. Identities = 46/334 (13%), Positives = 102/334 (30%), Gaps = 13/334 (3%) Query: 15 RTRHGKII--YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 +T+ G+ Y + + + R + + A + R+ L Sbjct: 5 KTQDGRFYVQYRVQYRNSPK-REYFGKGTEAKRAARERDAEIKLMKTRNEDVRESHIYLD 63 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKH-TP 130 L Y + I + ++ + K+ + K + Sbjct: 64 ELAKAYIEHEKVKGRDRKFLIEVRNRLNKSFLPALNHVPVHKLKARDFDKLALEYKDLSN 123 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 SS +++T + V+F + V E++ NP + + K E R Sbjct: 124 SSFNRYITYLNVIFNFGVEFEHIEKNPMTNWRKRVMKREKPRDLEITIDDVRAIMAHAAP 183 Query: 191 QPRLAFEFLLYSGLRCSDS--CRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248 + A + +L +G R S R + + ++ + + T + + LA Sbjct: 184 HVQKAIKLILSTGCRPGKSELLRIKYSDVDFDAKRVRIRGSKTARSDRYVPLRDEFLAEI 243 Query: 249 PIGKETFFINNDKQKMNA--TQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATA 304 ++ + + F F A ++G+ K + +R F A+ A Sbjct: 244 RGWQDAAESDYIVEFEGKQLNGFKKGFNAAVRRSGIGKKVVPYHLRHFFASSLLANKADI 303 Query: 305 HELMATYGWKTVDQA-ETYTKGA-DRIRLGIKNS 336 + + G D + Y D + ++ Sbjct: 304 KAVASLMGHAGPDMLFKVYYHLIGDSEKEAVEKL 337 >gi|251789526|ref|YP_003004247.1| site-specific tyrosine recombinase XerC [Dickeya zeae Ech1591] gi|251789532|ref|YP_003004253.1| site-specific tyrosine recombinase XerC [Dickeya zeae Ech1591] gi|247538147|gb|ACT06768.1| integrase family protein [Dickeya zeae Ech1591] gi|247538153|gb|ACT06774.1| integrase family protein [Dickeya zeae Ech1591] Length = 369 Score = 105 bits (262), Expect = 9e-21, Method: Composition-based stats. Identities = 48/334 (14%), Positives = 94/334 (28%), Gaps = 36/334 (10%) Query: 47 YMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS 106 AL P P +L L+ + + + + + + + I + Sbjct: 7 RADALLTVDEVYRKPIGPASDPKSLYALLLRFVVWRRERNWSETTLKTQTHHQYRFILWA 66 Query: 107 GDFDY---RKITTKHIRSGVESRKH---------TPSSAIQFLTSMRVLFKWAVRQEYVA 154 + R IT + + + L + V F W R + Sbjct: 67 AERGLHYGRDITLPILEHYQRHLYQYRKPNGEPLSTRTQRSQLGPLVVWFGWMTRHHLLL 126 Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-----GSQPRLAFEFLLYSGLRCSDS 209 +P + P+ + R + + G + R E L +G+R + Sbjct: 127 ADPASGLVLPRLEKRLPRHILSVADVEQVLALPDLTTLQGIRDRALMELLWSTGIRRGEV 186 Query: 210 CRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--- 264 V + +I +I K + + ++ L + N Sbjct: 187 AVLEVYSVDASRHIVTIVQGKGKKDRVIPVGQRALRWLTYYLQAVRPQLLVNPHCPALFV 246 Query: 265 --------NATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWK 314 + +G+ K S H R AT + GA + A G Sbjct: 247 ALDGIEGLTPNGITNLVSYYIKASGIAKWGSCHLFRHAMATQMLENGADLRWIQAMLGHA 306 Query: 315 TVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 +V+ + YT+ + R + S+ DP Sbjct: 307 SVESTQIYTQVSIRALQAVHA----STHPAERDP 336 >gi|260642076|ref|ZP_05414491.2| site-specific recombinase, phage integrase family [Bacteroides finegoldii DSM 17565] gi|260623620|gb|EEX46491.1| site-specific recombinase, phage integrase family [Bacteroides finegoldii DSM 17565] Length = 420 Score = 105 bits (262), Expect = 9e-21, Method: Composition-based stats. Identities = 49/371 (13%), Positives = 97/371 (26%), Gaps = 47/371 (12%) Query: 4 SLRLPPFVTKERTRHGKIIYY---FRKGHGRRIRLPYPHESTFIP--------------- 45 ++ P V + + +G + Y + KG + L P Sbjct: 40 KVKEPVRVRQRKLANGNMSLYLDVYVKGVRKVESLGLYLVPELTPLDRQQNIHARQVADK 99 Query: 46 -AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR 104 L N ++ TL + EY + + ++ +I Sbjct: 100 IKAERILALQNHGVRQWNKVKRSCITLVDFLKEYEQEKF--GFSASTLKGRRDLRGKIET 157 Query: 105 KS-----GDFDYRKITTKHIRSGVESRKH------------TPSSAIQFLTSMRVLFKWA 147 D + R ++ ++ + +A + A Sbjct: 158 YLKETNRPDIVLANVDVDFCRGFIDFLRYAKNGVRKDGSVISNGAAHHHQAVLNGALNKA 217 Query: 148 VRQEYVAINPCLSV---ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204 VR ++ NP S+ E+ + T E+M+ + + AF F ++GL Sbjct: 218 VRDGILSANPLKSISSKEKYQPSESMREYLTLEEMKVVMAASCPHEDVKRAFLFSCFTGL 277 Query: 205 RCSDSCRAGVQHLQNNIFS---IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261 R D + K + + + + Sbjct: 278 RLGDVRSLTWGKIVKAPDGKTLFVRTKMEKTQKIVNVPLSKEAIDCLNPKENNEEPIFML 337 Query: 262 QKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQA 319 + + A + K H R AT+ GA + G V+ Sbjct: 338 PAGTSN-IERNIEKWMQDAKITKHITYHCSRHTYATMLLTLGADIYTTSKLLGHSNVNTT 396 Query: 320 ETYTKGADRIR 330 Y K D+ + Sbjct: 397 SIYAKIVDKKK 407 >gi|330502138|ref|YP_004379007.1| phage integrase family protein [Pseudomonas mendocina NK-01] gi|328916424|gb|AEB57255.1| phage integrase family protein [Pseudomonas mendocina NK-01] Length = 342 Score = 105 bits (262), Expect = 9e-21, Method: Composition-based stats. Identities = 47/342 (13%), Positives = 98/342 (28%), Gaps = 32/342 (9%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 ++ G+ + + G+R R Y +T + N + L Sbjct: 4 KKQPDGRWLADVQPIRGQRFR-KLFKTKAEALRYEQYITANKAADPAWNPKAQDRRRLSE 62 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSGVESRKHTP 130 L+ + H L ++ D + + D T H R TP Sbjct: 63 LVGLWFD-LHGHMLKDG--ERRKAKLDALCVRLRDPIAMKLDPATYAHDRRLRAEAGITP 119 Query: 131 SSAIQFLTSMRVLFKWAVRQEYV-AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + L +R +F + NP ++ + + + T+E + + EG Sbjct: 120 KTLNNELGYIRAVFNELRGLGQIDYANPLELMKLYRIEERELSWLTQEQIADLLTSIREG 179 Query: 190 ---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246 L +G R S++ L+N + K+ + TV + + Sbjct: 180 CDNPHVEPIVLLCLATGARWSEAECLTPSRLRNGAVTYSKTKSSKVRTVPIQPELEAFIR 239 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV----NKSAHGVRKFSATISADAGA 302 F F+ +++G+ +++H +R A+ G Sbjct: 240 DHWKRHGQFTGAITS-----------FRRALSRSGIVLPKGQASHALRHTFASHFMQKGG 288 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 L G ++ Y L ++ + Sbjct: 289 NILTLQKILGHSSLAMTMRYAH------LAPEHLAEAVKLNP 324 >gi|332180870|gb|AEE16558.1| integron integrase [Treponema brennaborense DSM 12168] Length = 398 Score = 105 bits (262), Expect = 9e-21, Method: Composition-based stats. Identities = 37/307 (12%), Positives = 77/307 (25%), Gaps = 58/307 (18%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI----RSGVESRKHTP 130 I++Y + + ++ + ++ ++ I V + + Sbjct: 85 ITKYVTLLEAKHYSRRTVQAYAKWLIAFGKRFASIPSALLSQTEINLFLTELVTEKNVSA 144 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 S+ Q L ++ F++ E + + + P + F Sbjct: 145 STQNQALAALLFYFRYIKGTEPCNLASVIRAK-----KTVHIPVVFSKDEVRAIFDQLSD 199 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVELPDGFMKLLAMT 248 + L + L +G+R S+ +Q + I + K LP K + Sbjct: 200 EKLLIAQLLYGTGMRLSECLCLRIQDIDFAHNMIIIRNGKGAKDRRTMLPHILEKKIRAH 259 Query: 249 ----------------------------------PIGKETFFINNDKQKMNATQFSIW-- 272 + F ++ K T Sbjct: 260 IVSVKQLHQADIADGWGVVTLPFALRKKYSGASADFAWQWVFPQKNRWKNTDTGMQGRYH 319 Query: 273 ---------FKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321 + AG+ K H R AT + G + G V Sbjct: 320 IDASIMERAVQKAVRDAGIYKRGNCHTFRHSFATHLLENGYDIRTVQELLGHSDVKTTMI 379 Query: 322 YTKGADR 328 YT ++ Sbjct: 380 YTHVLNK 386 >gi|289676143|ref|ZP_06497033.1| site-specific recombinase, phage integrase family protein [Pseudomonas syringae pv. syringae FF5] Length = 354 Score = 105 bits (262), Expect = 9e-21, Method: Composition-based stats. Identities = 48/354 (13%), Positives = 111/354 (31%), Gaps = 31/354 (8%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 +T G RK + + + YI + TL+ Sbjct: 6 KTPSGTWKALIRKTGWPTV-AKTFRTKRDAEDWSRRTEDEMVRGVYIQRSGSERMTLENA 64 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-------- 126 + Y + ++ + + Q+I+ G + ++++ I + ++R Sbjct: 65 LQRYLREVSPTK-KPTTQKAEATKAQQLIKHLGKYSLAALSSEVIANYRDTRLGSLTNRG 123 Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + ++ L + LF A+++ + NP L++ +P R T ++ ++ Sbjct: 124 QPTSNNTVRLELALLSHLFTVAIQEWGLGLTYNPVLNIRKPSPGEGRNRRLTADEERRLL 183 Query: 184 SFWSEGSQPRLAFE--FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 ++ S P L + L +G+R S+ + T +P Sbjct: 184 KEVNKHSNPMLGWIVSIALETGMRSSEITGLRRHQVDVKKRVAHLLVTKNDSARTVPLSK 243 Query: 242 MKL----------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVR 290 + + F K F+ + +K G+ H +R Sbjct: 244 LAAATFQAALQNPVRPIDCDLIFFGEPGKDGKRRPYAFTKIWGLLKSKLGMPDFRFHDLR 303 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 + + + G + E+ + G K++ + YT R+ S+ Sbjct: 304 HEAVSRLVEGGLSDQEVSSISGHKSMQMLKRYTHL-----RAEDLVVRLDSLKA 352 >gi|294101938|ref|YP_003553796.1| integrase family protein [Aminobacterium colombiense DSM 12261] gi|293616918|gb|ADE57072.1| integrase family protein [Aminobacterium colombiense DSM 12261] Length = 311 Score = 105 bits (262), Expect = 9e-21, Method: Composition-based stats. Identities = 39/296 (13%), Positives = 89/296 (30%), Gaps = 17/296 (5%) Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 K T + ++ Y + LA + + + + + + + + S Sbjct: 10 KTEETWQQVVERYVLTRKADGLAPRTVKDYRYHLTRFFTAYPEGLNPDKAKRCVLEYM-S 68 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ---F 182 + +P L +R F+W V + + NPC + K + + + Sbjct: 69 LERSPGYHNMVLKYLRCFFRWTVNEGILYSNPCSGIRSRKAQPKIAQHSPDVVKALLALP 128 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT----IITVELP 238 G + L +G+R ++ V+ + + + T+ + Sbjct: 129 DQSTYTGLRSYALLLLSLDTGIRPREALSLRVEDVSIPARVVVVRAETAKTRVQRTLPIS 188 Query: 239 DGFMKLLA------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKF 292 D + + F + D Q + + K K G + + + +R Sbjct: 189 DQTAQAIMKLVSIRPKEWRNAPLFCSRDGQPLRVNSWYHTVKGYGEKIGADITPYSLRHL 248 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 A L G +D + Y A ++ ++S V++ P Sbjct: 249 FALYFLRNNGNTFALQRIMGHDNLDTTKIYVALAQ---SDLEEQHELASPVNALFP 301 >gi|41057040|ref|NP_957522.1| putative integrase [Streptococcus thermophilus] gi|34980337|gb|AAQ84064.1| putative integrase [Streptococcus thermophilus] Length = 308 Score = 105 bits (262), Expect = 9e-21, Method: Composition-based stats. Identities = 40/289 (13%), Positives = 88/289 (30%), Gaps = 32/289 (11%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129 T I+ Y + + + +++ Q G R+ + + + + K + Sbjct: 24 TFDRFIN-YLDA------SPKTVETYKKALRQFFNYLGLHGIRQPQREDVLAFRDDLKAS 76 Query: 130 ---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 P++ ++T+ R+ FKW ++ K T ++ + Sbjct: 77 GLKPTTVQNYITATRIFFKWTEQEGLYPNIAEHVKGAKLDKNHKKDYLTSRQAKEVLANI 136 Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD--- 239 EG + ++ GLR + RA V L+ + G + Sbjct: 137 KTDTEEGLRNYAILSLMVTGGLRTIEVSRADVGDLRTVGENTVLFVQGKGREEKTEYIKI 196 Query: 240 ------------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---K 284 L + N+ +++ S K AG + Sbjct: 197 SAPVEKAIRTYLKARDLTTEEQPLFTSTSNNSRGKRITTRTVSAVVKNALKNAGYDSARL 256 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 +AH +R + T++ AG E+ ++ Y D+ + + Sbjct: 257 TAHSLRHTAITLALLAGREITEVQQFARHANLNTTMIYNHALDQAKTAV 305 >gi|146297605|ref|YP_001181376.1| phage integrase family protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145411181|gb|ABP68185.1| phage integrase family protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 286 Score = 105 bits (262), Expect = 9e-21, Method: Composition-based stats. Identities = 39/270 (14%), Positives = 91/270 (33%), Gaps = 23/270 (8%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRSGVESR 126 EY K+ + N+ S+ + +R D + + +S + + Sbjct: 5 FEEYLKTQDFT---ENTIKSYTKDVELFMRWYVDTTGQEFLPENLTEFDLVEYKSYLLRK 61 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG--IRPWTKEDMQQFKS 184 H PS+ + + S+R + + + + + +++ K T K+D+ +F+ Sbjct: 62 NHKPSTVNRSIISLRKFVHFLLDRGLLNKDISTRLKQVKDTTRNLSPVVLDKKDIYKFRR 121 Query: 185 --FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242 ++ E LL +G+R S++ ++ ++ + K + G + Sbjct: 122 TVHQFGKTRDVALVELLLNTGMRISEAINLKLEDVEISERKGKVKIWGKGRSYREVPLNS 181 Query: 243 KLLAMTPIGKETFFINNDKQ--------KMNATQFSIWFKAKATKAGVNKSAHGVRKFSA 294 + + K+ + A AG+ H +R F A Sbjct: 182 DARKYLSEYLKKRPYSETNYLFVTSTGKKLTRNSAYKIIQKYAKLAGLCLHPHMLRHFFA 241 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324 D G +++ G + ++ Y K Sbjct: 242 QTLIDKGLNIYDVQQLLGHQRIETTLRYKK 271 >gi|300769888|ref|ZP_07079768.1| integrase [Sphingobacterium spiritivorum ATCC 33861] gi|300763339|gb|EFK60155.1| integrase [Sphingobacterium spiritivorum ATCC 33861] Length = 414 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 42/272 (15%), Positives = 88/272 (32%), Gaps = 22/272 (8%) Query: 79 RKSAHWGSLAVNSRISFESYFDQIIRKSG------DFDYRKITTKHIRSG----VESRKH 128 +S A + +++ + D D RKI I +RK Sbjct: 120 IQSLIGQEYAPGTLERYKTSLKHTVDFLQTRHTIQDIDIRKIDHAFIMDYEFYLRNTRKC 179 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 ++A++++ + R + + ++ +P ++ + K + T+E++ S Sbjct: 180 NNNTAVKYIKNFRKIINICIANGWLDRDPFVNYKS-KIREVERSYLTQEEVHIIYSRTFA 238 Query: 189 GSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM--- 242 + R F F ++GL D H+ I K T T + Sbjct: 239 TDRLNIVRDIFVFSCFTGLAYIDVRNLTPFHINIGIDGGKWIFTHRQKTETPSRIPLLPI 298 Query: 243 --KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS- 297 +++ + ++ + + + K A G+ K + H R AT Sbjct: 299 ALEIIRKYEDHPQCSNEGTLLPILSNQKMNAYLKEIADICGIRKELTFHIARHTFATTIT 358 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRI 329 G + G K + + Y K D+ Sbjct: 359 LSNGVPIESVSKMLGHKNLRTTQHYAKILDQK 390 >gi|228964325|ref|ZP_04125444.1| Integrase [Bacillus thuringiensis serovar sotto str. T04001] gi|228795422|gb|EEM42910.1| Integrase [Bacillus thuringiensis serovar sotto str. T04001] Length = 376 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 52/334 (15%), Positives = 95/334 (28%), Gaps = 50/334 (14%) Query: 30 GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAV 89 GRR L + R I + + T + L + Y + LA Sbjct: 33 GRRFILSRTGKRGKAKL----------GRTSIEVTQIEIYTFQELFNIYMFAKEAEGLAK 82 Query: 90 NSRISFESYF----DQIIRKSGDFDYRKITTKHIRSG--------------------VES 125 + + + YF + + D + T IR +S Sbjct: 83 RTLENKKGYFLVFHRYLEERHEDVTPNTLDTNTIREFLYYLKNDHIKHKNNHCIKEKYKS 142 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-- 183 + S + MR + + V +EYV +NP ++ K + I + + ++ Sbjct: 143 IGVSVSYINTIMKHMRAFYNFLVEEEYVQLNPFTKIKSLKEAQDNIEALSVDQLKTLLKQ 202 Query: 184 --SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI----KTQKTGTIITVEL 237 G + + L +G+R S++ + L I K V + Sbjct: 203 PNQRTYAGFRDYVLMMLLADTGMRISEALNLQQEDLDFKTNIIELKGTNTKNRQTRYVPI 262 Query: 238 PDGFMKLLA-----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGV 289 KLL + F ++ +F K +G+ S H Sbjct: 263 SQKTSKLLRELLVEIEEFDTLHIFATVYGNAIDPARFRQRLKMYGHNSGIKGVRVSPHTF 322 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323 R A L G +++ Y Sbjct: 323 RHTFAKYYLLNNGDVMTLQKILGHSSIEMVRKYI 356 >gi|148988039|ref|ZP_01819502.1| site-specific recombinase, phage integrase family protein [Streptococcus pneumoniae SP6-BS73] gi|147926503|gb|EDK77576.1| site-specific recombinase, phage integrase family protein [Streptococcus pneumoniae SP6-BS73] Length = 384 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 55/366 (15%), Positives = 107/366 (29%), Gaps = 55/366 (15%) Query: 11 VTKERTRHGKIIYYF-------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63 + K +T+ G I+YY G +R Y + L Sbjct: 3 IHKYKTKKG-ILYYVSFYIGLDAYGKKKRHLKRGFKTKKEAKLYEARLEAGVVAPTVNTD 61 Query: 64 PRKKPTTLKWLISEYRKSA---HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 T K L E+ K+ + + ++ + I+ G +I+ + Sbjct: 62 KPNPKVTYKELYQEWFKAYVGTVEETTSSQTKNIYRI---HILSIFGGKFIDQISPLDCQ 118 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-IRPWTKEDM 179 + + + T + Q + +F +A+ Y+ NP +V PK K W+ E++ Sbjct: 119 NFITQKSQTFKNIKQIKSYTSKIFDFAINMNYIDRNPMKNVIMPKIKKTRSDNFWSLEEL 178 Query: 180 QQFKSFWSEGSQPRLAFEFLL--YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----- 232 F E + F L +SGLR + + + + K+ Sbjct: 179 HHFLDIVKETEPFKHFALFRLLAFSGLRKGELYALKWDDINFDSNLLNIDKSLGRIDGKA 238 Query: 233 -----------ITVELPDGFMKLLAMTP--------------------IGKETFFINNDK 261 T+ L D + ++ N+ Sbjct: 239 IEKSTKNESSVRTIYLDDETIDIVKQWRNFYLKEQSQFPLTKLNISNEYMFYYISSNDKI 298 Query: 262 QKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA- 319 + ++A + K + HG R AT+ ++ G G + Sbjct: 299 EPLHADYINNVLNRIIKKHKLKPIIPHGFRHTHATLMSEIGIDPSNTSKRLGHASSQMTL 358 Query: 320 ETYTKG 325 + YT Sbjct: 359 DVYTHT 364 >gi|330429397|gb|AEC20731.1| site-specific recombinase, phage integrase family [Pusillimonas sp. T7-7] Length = 362 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 46/361 (12%), Positives = 103/361 (28%), Gaps = 34/361 (9%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 +T G RK + + YI + ++ Sbjct: 6 KTPSGTWKALIRKTGWPA-TAKTFRTKRDAEDWARRTEDEMVRGMYIQRAPAERMIVEAA 64 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-------- 126 + Y + +++I +I+ G + ++ + ++R Sbjct: 65 LKRYLREVTPTK-RESTQIGEHKKAQALIKHLGKYSLAALSADIVAQYRDARLAGDEDEN 123 Query: 127 ----KHTPSSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQ 180 + ++ L + LF A+++ + NP ++ RP R T + + Sbjct: 124 GKRVPRSNNTVRLELALLGHLFTVAIKEWGIGLPFNPVSNIRRPAPGAGRNRRLTPTENK 183 Query: 181 QFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 + + S P L +G+R S+ + + ++ + T +P Sbjct: 184 RLLTAVDAYSNPMFSWIVRVALETGMRLSEIAGLRLGQVDMQKRVVRLEHTKNSSPRTVP 243 Query: 239 DGFMKL----------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAH 287 L F F + AG+ + H Sbjct: 244 LTKAATSVFQAALDNPLRPPETDLVFFGEPGKDGMRRPYLFDKAWSDAKKAAGLVDFRFH 303 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347 +R + + +AG + E+ A G K++ + YT R+ + + Sbjct: 304 DLRHEAVSRLVEAGLSDQEVAAISGHKSMQMLKRYTHL-----RAEDLVGRLDELERRER 358 Query: 348 P 348 P Sbjct: 359 P 359 >gi|237711657|ref|ZP_04542138.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA] gi|237725901|ref|ZP_04556382.1| tyrosine type site-specific recombinase [Bacteroides sp. D4] gi|265753077|ref|ZP_06088646.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_33FAA] gi|229435709|gb|EEO45786.1| tyrosine type site-specific recombinase [Bacteroides dorei 5_1_36/D4] gi|229454352|gb|EEO60073.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA] gi|263236263|gb|EEZ21758.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_33FAA] Length = 293 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 35/265 (13%), Positives = 92/265 (34%), Gaps = 24/265 (9%) Query: 76 SEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESR---K 127 + + + + + +S+ + + D+ + +R V + Sbjct: 4 DSFLDYLRFERNYSEKTIVSYGIDLIKFEEYIRGKDENVDFTTVDADLVRGWVMNLIEDG 63 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-----F 182 +T +S + L+S+R +++ +++ + +P L + PK K + +M + Sbjct: 64 YTSASVNRKLSSLRSFYRFLLKKGVIGEDPMLKIIGPKNKKPLPVFLKEREMDRLLDDVP 123 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGF 241 G + R+ E +G+R S+ + + T K + + Sbjct: 124 FKEDFTGCRDRMVLEMFYATGMRLSELIGLNDVDVDFSASLIKVTGKRNKQRLIPFGEEL 183 Query: 242 MKLLAMTPIGKET--------FFINNDKQKMNATQFSIWFKAKATK--AGVNKSAHGVRK 291 + + + + FF+ + ++M + + K +K + +S H +R Sbjct: 184 RRAMFVYLKIRNEVLPGKAGAFFVLKNGKRMYPGKVYLLVKRNLSKVVSLKKRSPHVLRH 243 Query: 292 FSATISADAGATAHELMATYGWKTV 316 AT + A + G ++ Sbjct: 244 TFATAMLNNEAELGAVKELLGHSSL 268 >gi|254452044|ref|ZP_05065481.1| putative phage-related integrase [Octadecabacter antarcticus 238] gi|198266450|gb|EDY90720.1| putative phage-related integrase [Octadecabacter antarcticus 238] Length = 385 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 56/348 (16%), Positives = 119/348 (34%), Gaps = 19/348 (5%) Query: 9 PFVTKERTRHGKIIYYF-RKGHGR--RIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65 + G ++ R+ +GR R + T A + A + + + Sbjct: 32 RGLGLRVATSGTKSWFMMRRFNGRMLRTTFGRYPDLTLANARLKAPNVLADMSDGLTQGQ 91 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 +K K ++ E+ K + +V+ + + + G IT + + ++ Sbjct: 92 RKTDLFKVVLDEWLKKDQAKNKSVHQVRV--AMYKHALPAFGPMPVASITKRDVNRLIDK 149 Query: 126 R--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 +P +A + L + F W ++ + ++P ++ P ++ R T E+++ F Sbjct: 150 IVDAGSPVAANRVLAFTKRFFSWCKERDILELSPAEAIRPPSKEKTRDRVLTLEEIKGFW 209 Query: 184 SFW-SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELP 238 + G F+ LL +G R + +A + + K G ++L Sbjct: 210 AACDQMGYPWGPIFQLLLLTGARLREVSQASWGEVSIADGTLNLPARRTKNGRAHQIQLS 269 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATIS 297 D + ++ P + I + FS K +GV + H +R+ AT S Sbjct: 270 DQAINIIQALPKVEGQDLIFTTNGTTAVSGFSKVKKRLDIISGVADWRFHDLRRSFATHS 329 Query: 298 ADA-GATAHELMATYGWKTVD---QAETYTKG--ADRIRLGIKNSRRI 339 + G + T A Y G + R ++ Sbjct: 330 TERLGISPVVADKILNHVTGQVRGVAAIYQHGEYLEERRASLQKWGNF 377 >gi|150397133|ref|YP_001327600.1| hypothetical protein Smed_1931 [Sinorhizobium medicae WSM419] gi|150028648|gb|ABR60765.1| hypothetical protein Smed_1931 [Sinorhizobium medicae WSM419] Length = 388 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 51/326 (15%), Positives = 98/326 (30%), Gaps = 20/326 (6%) Query: 33 IRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY--RKSAHWGSLAVN 90 RLP F P A + K L+ + + W LA + Sbjct: 64 KRLPDLKSKEFWPEATKAHEAFIRRGRQGIKD------FKALVEAFQSETNPFWTKLAAS 117 Query: 91 SRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQ 150 ++ + + D I GD +TT + +++ TP+ A QF + L W + Sbjct: 118 TQRGYRTSGDIIKETWGDDLPVDLTTVDAQDAIDALGETPAKANQFRAFLSRLMAWGASR 177 Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210 Y N E+ G + ++ ++G R D Sbjct: 178 GYCKTNVVEMTEKI---PGGEPWVPWPNWAFEILLEHAPFHMQMIAMSAFFTGQRQGDVL 234 Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI--NNDKQKMNATQ 268 N +++ QKTG + + + + K + P + Sbjct: 235 AMTKPKAGENTIAVRAQKTGNTVWIPIHFAYRKWIDRVPTSDSVMLHAGARATSYKSPDG 294 Query: 269 FSIWFKAK-ATKAGVNKS-----AHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 F ++ A A HG+RK + + G T +++ A + + Y Sbjct: 295 FRTEWQKLMAKDAFKPFRENRIVFHGLRKNAVINLLEVGCTENQVGAICN-MSAQMVQHY 353 Query: 323 TKGADRIRLGIKNSRRISSVVDSDDP 348 + L + + + +P Sbjct: 354 GREVVLRSLAKDAMKLMEARWSEIEP 379 >gi|315268238|gb|ADT95091.1| integrase family protein [Shewanella baltica OS678] Length = 318 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 50/322 (15%), Positives = 99/322 (30%), Gaps = 31/322 (9%) Query: 15 RTRHGKIIYYFRK--GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 G R +G+R R T Y + ++++++P + L Sbjct: 4 TKVDGGYRVDIRPSGRNGKRYR-RTFETKTEATKYEKFILSQHHNKDWLDAPIDRRPLL- 61 Query: 73 WLISEYRKSAHWGSLAV--NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KH 128 LI + H +L N+R + + + G+ ++ T + R K Sbjct: 62 ELIDLWF-HFHGKNLKEGVNTRKNLITT----CKLMGNPQSHQVNTNFYLNYRARRLEKI 116 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 TP +A LT ++ ++ + A L P + + + + Sbjct: 117 TPKTANLELTRLQGVYSVLIAAGEYAGEHPLKSAPPIKLQAKDQSFLTKPQIAQLLALLS 176 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248 G L + L +G R S++ L ++ + K G T+ + F L Sbjct: 177 GEML-LIVKICLSTGARWSEAQNLTSSQLLDDRINFINTKNGKNRTIPITREFRAELPNG 235 Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV----NKSAHGVRKFSATISADAGATA 304 + F A +G+ +++H +R A+ G Sbjct: 236 NGRLFADCYHQ-------------FLAVLKSSGIVLPKGQASHVLRHTFASHFVMNGGNI 282 Query: 305 HELMATYGWKTVDQAETYTKGA 326 L G ++ Y A Sbjct: 283 LTLQKILGHGSIQMTMRYAHLA 304 >gi|167625815|ref|YP_001676109.1| tyrosine recombinase XerC [Shewanella halifaxensis HAW-EB4] gi|167355837|gb|ABZ78450.1| tyrosine recombinase XerC [Shewanella halifaxensis HAW-EB4] Length = 303 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 35/276 (12%), Positives = 87/276 (31%), Gaps = 22/276 (7%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRKHT 129 Y ++ ++ + ++ ++ + + + ++ +H I + + + + Sbjct: 16 FERYLRTE--RQVSAYTVRNYLFELKRVEKLFSETE-SWLSQQHDSLQAILAKLHRKGLS 72 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 P S L+S++ +++ +R++ + INP +S+ PK+ + + + + Sbjct: 73 PRSLSLTLSSLKQFYEFLLREQQLKINPAISLTAPKQGKPLPKNMDVDSVSHLLDIDAND 132 Query: 190 S---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFMKLL 245 + + E SGLR + +Q + K V + + + Sbjct: 133 PLSFRDKAIMELFYSSGLRLGELAALNAADIQFSEAQVKVLGKGSKERIVPIGKLALAAI 192 Query: 246 AMTPIGKETFFINNDKQKMN-------ATQFSIWFKAKAT--KAGVNKSAHGVRKFSATI 296 K D + G+ H +R AT Sbjct: 193 TQWLEIKRDIACEGDALFVTAKGKRLAHRSIQARLAKWGQEQAIGMKVHPHKLRHSFATH 252 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 ++ A + G + + YT D L Sbjct: 253 MLESSADLRAVQELLGHANLSTTQVYT-SLDFQHLA 287 >gi|317480894|ref|ZP_07939975.1| phage integrase [Bacteroides sp. 4_1_36] gi|316902979|gb|EFV24852.1| phage integrase [Bacteroides sp. 4_1_36] Length = 356 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 37/285 (12%), Positives = 88/285 (30%), Gaps = 19/285 (6%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS----------GV 123 + ++ + N ++ + + G+ + +T + + Sbjct: 73 FLEYFKNLMIERGSSQNWATAYMHFHNY---THGECRFCDLTVPYCQGFLDYLLSDACMH 129 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 ++ ++A LT ++ + A + N + R K + TKE++ Q Sbjct: 130 NGKRMMGTTANNNLTKLKCILAIAYEDGLLKENIAKKLVRAKAHGNKRQFLTKEELLQLS 189 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 + R A F +GLR SD R +++ T + Sbjct: 190 QTPCKSDVLRRAGLFSCLTGLRLSDCIRLQWENIIKLADGGWGMDIITK--KTSTAAILP 247 Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301 + + + + +++ K +G+ K + H R AT+ G Sbjct: 248 ISEEALQLCGERGTGQVFKNLTNSTVTLYLKPWIKASGIEKHITFHCFRHTFATLQLAEG 307 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346 + + + + Y D ++ + RIS + + Sbjct: 308 TDIYTVSKLLTHSNLATTQVYADVVDELKR--DAAERISLKMPTK 350 >gi|197302682|ref|ZP_03167736.1| hypothetical protein RUMLAC_01412 [Ruminococcus lactaris ATCC 29176] gi|197298264|gb|EDY32810.1| hypothetical protein RUMLAC_01412 [Ruminococcus lactaris ATCC 29176] Length = 370 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 43/343 (12%), Positives = 96/343 (27%), Gaps = 41/343 (11%) Query: 14 ERTRHGKIIYYFRK----GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 + +G R G ++ + + + Sbjct: 4 YKNNNGTWYVMIRYQDWTGARKQKCKRGFATRKEAADW--------ELQFKLQKKASLDM 55 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH 128 T++ + Y + SL ++ ++ E+ +I+ G +IT K + + Sbjct: 56 TMESFCALYEEDVRP-SLKQSTWLTKENIIQKKILPYLGQRKVSEITAKDVMDWHNQMRK 114 Query: 129 ---------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKED 178 +P+ + +F AV+ ++ NP + WTKE+ Sbjct: 115 LKTKTGKLLSPTYLKTIHGQLSTIFNHAVKYYDLSTNPARKAGALGTEEGKEMLFWTKEE 174 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------ 232 + F + AF+ L + G+R + +++ K+ Sbjct: 175 YKLFAEEMMDKPLSYYAFQLLYWCGIRSGELLALTPADFNFKKKTLRINKSYQRLQGKDV 234 Query: 233 ----------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 TV +P + + ++ + + + GV Sbjct: 235 ITTPKTKNSIRTVVMPQFLCDEMQDCLKLYYSLKPDDRIFPVTKYYLNHEMERGCKACGV 294 Query: 283 NK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 K H +R ++ + G TA + G Y Sbjct: 295 KKIRVHDLRHSHVSLLINMGYTALAIGKRVGHSAEKITYRYAH 337 >gi|182420352|ref|ZP_02951578.1| integrase/recombinase, phage integrase family [Clostridium butyricum 5521] gi|237668584|ref|ZP_04528568.1| integrase/recombinase, phage integrase family [Clostridium butyricum E4 str. BoNT E BL5262] gi|182375796|gb|EDT73391.1| integrase/recombinase, phage integrase family [Clostridium butyricum 5521] gi|237656932|gb|EEP54488.1| integrase/recombinase, phage integrase family [Clostridium butyricum E4 str. BoNT E BL5262] Length = 333 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 38/255 (14%), Positives = 82/255 (32%), Gaps = 11/255 (4%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--SRKHTPSSAIQ 135 Y L+ + +++ + ++ I+T +R + + S+ Sbjct: 65 YLACKKLEGLSSKTLYNYKLFLIKLNMYF-TKPVSTISTMDLRMFLAVLGKGKQASTTNG 123 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195 ++T ++ F W +EY+ NP +++ K ++ + E++++ + Q L Sbjct: 124 YITYLKNFFGWLQNEEYILKNPAAKLKQTKVPKVILQGYKAENLEKLREACVTEKQKCLF 183 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPD----GFMKLLAMTPI 250 + R S+ ++ + I T K V + Sbjct: 184 ELLD-STACRISEIDEIKIEDINWQEQSIIVTGKGNKQRVVYFSTKAKLHLKAYITGREE 242 Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELM 308 G Q + + KAGV H R+ AT ++G T + Sbjct: 243 GHVFVSDKAPHQHIGVRALQLIVAKIKEKAGVTEKVHCHKFRRTQATYLLNSGMTIQGVQ 302 Query: 309 ATYGWKTVDQAETYT 323 G + D + Y Sbjct: 303 KILGHTSPDVTQRYA 317 >gi|126667680|ref|ZP_01738648.1| hypothetical protein MELB17_10268 [Marinobacter sp. ELB17] gi|126627783|gb|EAZ98412.1| hypothetical protein MELB17_10268 [Marinobacter sp. ELB17] Length = 303 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 29/274 (10%), Positives = 71/274 (25%), Gaps = 26/274 (9%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KH 128 + L Y + + + Q+ +++T ++ Sbjct: 9 FQALHQRYLTELTLRGKSPKTIDLYTRCLRQVCDYFETCP-DQLSTDQLQQYFMHLVEHR 67 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + S +++ +++ + + + + + + + + + Sbjct: 68 SWSLVKIARNALQSFYQYVLGKPWEYVPIVKAPKVQTLQDVL-----SLKEVERLISRTR 122 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLA 246 ++ F GLR S+S + + ++ K V LP +K L Sbjct: 123 KLSYQVYFLTTYSLGLRLSESLNLTIADVDSHLMRVHVRCGKGKKDRFVPLPLMTLKALR 182 Query: 247 MTPIGKETFFINNDKQK--------------MNATQFSIWFKAKATKAGVNKS--AHGVR 290 + M K A G+ K H + Sbjct: 183 RYWATHRHPDLLFPGWHPPYASVATSGKPRVMARGGVQKAIKQVALDCGIRKHVHIHSMG 242 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324 AT + G + + G + YT+ Sbjct: 243 HSFATHMLENGVNLRSIQSLLGHASPVTTARYTR 276 >gi|260664108|ref|ZP_05864961.1| Lj965 prophage integrase [Lactobacillus jensenii SJ-7A-US] gi|260561994|gb|EEX27963.1| Lj965 prophage integrase [Lactobacillus jensenii SJ-7A-US] Length = 375 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 50/370 (13%), Positives = 112/370 (30%), Gaps = 46/370 (12%) Query: 11 VTKERTRHGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65 + + ++G+ Y F + +G+R + +F A + + + Sbjct: 9 IKEYTLKNGEKRYMFYIYLGQDSNGQRKQTTRRGFKSFAEAEEA--YNHLNIENANDFVK 66 Query: 66 KKPTTLKWLISEYRKSAH---WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122 +K T+ + + S A + I++ I G+ KI+ + ++ Sbjct: 67 QKQITINQMYEIWFARYRTTVKESTANKTAINYRV---HIKPFFGNAYMDKISVRDVQLW 123 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ-- 180 + + +R +++A+R YV+INP S+ P + + R Sbjct: 124 ADKLATKLVKFNDPIFILRSFYEYAIRMNYVSINPVGSIIMPIKTSRPRRNVEDNVYSRK 183 Query: 181 ----QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--------------- 221 F+ + F+ L +GLR S++ + Sbjct: 184 ELELFFQVAKEYNLRAYTYFKLLASTGLRKSEALALTWDDIDFINGVIDVNKTLAVGLDN 243 Query: 222 -FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS-----IWFKA 275 ++ K+ + I + + E S W +A Sbjct: 244 KVQVQPPKSKSSIRQVPISANLANVLNEYKNSEKILSAKVFHTYTGKYLSLSKPMKWLEA 303 Query: 276 KATKAGVNK---SAHGVRKFSATISA-DAGATAHELMATYGWKTVDQA-ETYTKGADR-I 329 KA + + HG R AT+ + + G + + YT ++ Sbjct: 304 IYNKAPKDLKHITVHGFRHTFATLLISETDVKPKTVQMLLGHSNIQMTLDIYTHINNKNK 363 Query: 330 RLGIKNSRRI 339 + + + Sbjct: 364 KEAVNMLNEL 373 >gi|255994142|ref|ZP_05427277.1| integrase/recombinase XerD [Eubacterium saphenum ATCC 49989] gi|255993810|gb|EEU03899.1| integrase/recombinase XerD [Eubacterium saphenum ATCC 49989] Length = 298 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 34/269 (12%), Positives = 88/269 (32%), Gaps = 26/269 (9%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVESRKHTPS 131 Y + SL+ ++ ++ G + ++ + + P+ Sbjct: 13 YLE--KDRSLSTSTIGAYHEDLQAFHIFVYGKGIKGYKRVKNTDIDDFVENLKRQDYAPA 70 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS- 190 + + ++S+R + + V + NP L ++ PK + I +T E++ + ++ + Sbjct: 71 TIRRRISSVRAFYNYLVNTGAMRKNPTLGLKAPKLNKKTIDYFTVEEIDLLLASVTDDTD 130 Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247 + + E + +GL+ ++ + + I + + Sbjct: 131 SGIRDKAVLELMYAAGLQLTELLELKMSDVDIRAGLITAGLKKRRVIPIGSHARKAVEKY 190 Query: 248 TPIGKETF-------------FINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFS 293 ++ F+N +K + FK A K G+ + + +R Sbjct: 191 ISDVRKLKFSKLSKKDASSPLFVNYLNKKFSRQGIWKIFKDYAAKTGIIKFTPNMLRNSF 250 Query: 294 ATISADAGATAHELMATYGWKTVDQAETY 322 A GA + G + + + Y Sbjct: 251 AVHMLQNGADIKTVQELMGHENISITKQY 279 >gi|206580182|ref|YP_002239994.1| site-specific recombinase, phage integrase family [Klebsiella pneumoniae 342] gi|206569240|gb|ACI11016.1| site-specific recombinase, phage integrase family [Klebsiella pneumoniae 342] Length = 387 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 57/380 (15%), Positives = 117/380 (30%), Gaps = 58/380 (15%) Query: 15 RTRHGKIIYYFRKGHGRRIRLP-YPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 R G +F G+R+R + L + + I T + Sbjct: 4 TLRGGVWHCHFFTPSGKRVRRSLGTGDKKQAQELHDKLKAEAWRVDQIGD--LPVRTFEE 61 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP--- 130 + + S ++ + ++ D KIT + + V + Sbjct: 62 CCIRWLREKDHK----RSLDDDKTKIEFWLQHFSGRDVSKITAEEVHEAVNGMINRKHLQ 117 Query: 131 --------------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164 ++ Q L+ +R L + A ++ I ++ Sbjct: 118 VWESKRDAAVRKGKPVPEYKPRQVSQATKAQHLSFIRSLLR-AAANDWGWIKTAPVIKTR 176 Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 K ++ IR T+E+ ++ E +P + F L +GLR S+ Q + Sbjct: 177 KPISKRIRWLTREEAERLIECMPESIKPVVIFA--LATGLRRSNIIGLEWQQVDMQRKVA 234 Query: 225 KTQKTG----TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF----------- 269 I V L D ++L + + K Sbjct: 235 WVNPENAKAGKAIGVALNDTACRVLRDQIGKHSRWVFVHTTAKHRPDGTLTPAVRKMRVD 294 Query: 270 -SIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 + ++A KAG+ + H +R A+ +G L GW++++ Y A Sbjct: 295 DNNAWRAGLKKAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAP 354 Query: 328 RIRLGIKNSRRISSVVDSDD 347 +++R+I ++ + D Sbjct: 355 NH--LTEHARKIDAIFGASD 372 >gi|212691988|ref|ZP_03300116.1| hypothetical protein BACDOR_01483 [Bacteroides dorei DSM 17855] gi|212665380|gb|EEB25952.1| hypothetical protein BACDOR_01483 [Bacteroides dorei DSM 17855] Length = 308 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 36/304 (11%), Positives = 91/304 (29%), Gaps = 33/304 (10%) Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFD-YRKITTKHIRSGVE 124 T++ + +R+ + ++ ++ + I+ G+ D + + + Sbjct: 2 TKKTIREIADAWREDKRPY-VKQSTFAAYMLILENHILPYFGNDDTLSEKSVQTFVLQNL 60 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + + S L ++++ K+ V+ E+++ + + T + ++ Sbjct: 61 NAGMSAKSVKDILIVLKMVMKFGVKNEWMSYCEWEIKYPSTETNKELEVLTVANHKKILD 120 Query: 185 FWSEGSQPR-LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 + + R L L +GLR + C + +I Q+T I V D Sbjct: 121 YIRQNFTFRNLGIYISLSTGLRIGEVCALRWSDIDIEAGTISVQRTIERIYVIEGDKKHT 180 Query: 244 LLAMTPIGKETFFINNDKQ--------------------------KMNATQFSIWFKAKA 277 L + + + ++K Sbjct: 181 KLVINTPKTKNSCREIPMSKELISMVKPLKKIVNTDYYVLTNEPSPTEPRTYRNYYKRLM 240 Query: 278 TKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLGIK 334 + G+ K HG+R AT ++ + G + Y ++ + I Sbjct: 241 EQLGIPKLKYHGLRHSFATRCIESNCDYKTVSVLLGHSNISTTLNLYVHPNMEQKKRCIA 300 Query: 335 NSRR 338 + Sbjct: 301 KMFK 304 >gi|75675027|ref|YP_317448.1| Phage integrase [Nitrobacter winogradskyi Nb-255] gi|74419897|gb|ABA04096.1| Phage integrase [Nitrobacter winogradskyi Nb-255] Length = 400 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 49/328 (14%), Positives = 89/328 (27%), Gaps = 23/328 (7%) Query: 38 PHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFES 97 + + R+ P ++ LI Y + LA +R S Sbjct: 66 TAAREEAKRLKREIDQGRDPMAERDEARESPN-VRQLIDRYLEEH-ASKLAKRNRDDQAS 123 Query: 98 YFDQII-RKSGDFDYRKITTKHIRS----------GVESRKHTPSSAIQFLTSMRVLFKW 146 +++ G +I + G RK TP A + +R +F Sbjct: 124 MLRKLVEPAWGPRKAAEIQPDDVDRLLCQIAGGTLGKRGRKPTPVRANRVGEILRKMFNL 183 Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-SEGSQPRLAFEFLLYSGLR 205 A+R NP R T E + + + A +L +G R Sbjct: 184 AIRWRIRTDNPAAGFARNAEAPRDRYLSTDEIGRLSAALDAHPNRRAADAVRLILLTGAR 243 Query: 206 CSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK 263 + A + ++ T P + I Sbjct: 244 RGEVLGARWDQFDLDAAVWIKPAATTKQRRLHRAPISASAAALLRTIRLRVPKDCEWVFP 303 Query: 264 MNATQ-----FSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD 317 +A +++ TKA + H +R A++ G T + G V Sbjct: 304 GDAEGKPLQDIKRFWEDVRTKAELPAVRTHDLRHTFASLLVSGGMTLPMIGKLLGHTQVQ 363 Query: 318 QAETYTKGADR-IRLGIKNSRRISSVVD 344 + Y D +R G++ + Sbjct: 364 TTQRYAHLLDDPLRAGLEQVGDMLRAKP 391 >gi|157155436|ref|YP_001462104.1| phage integrase family site specific recombinase [Escherichia coli E24377A] gi|157077466|gb|ABV17174.1| site-specific recombinase, phage integrase family [Escherichia coli E24377A] gi|324113805|gb|EGC07780.1| phage integrase [Escherichia fergusonii B253] Length = 331 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 55/322 (17%), Positives = 104/322 (32%), Gaps = 24/322 (7%) Query: 14 ERTRHGKIIYYFRK--GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 ++ G+ R G+RIR A+ + + +E++ P TL Sbjct: 4 KKLDDGRYEVDVRPQGADGKRIR-RKFKTKGEAQAFERHVLVNYHNKEWLEKP-ADRRTL 61 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHI---RSGVES 125 L+ + + + II K + ++T K I R + + Sbjct: 62 TELLGRWW---IYHGKSHERGDIERGRLTTIIAKFAEMGVSRADQLTKKTITDYRVVMMN 118 Query: 126 RKHTPSSAIQFLTSMRVLF-KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 P+S + L M +F K EY + NP ++R + + + E++ + S Sbjct: 119 DGLKPASVNRHLAIMSGMFTKLIDAGEYHSHNPFREIKRLREAVTEMAFLSSEEITRLLS 178 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 A L +G R S+ +H+ N + + K G T+ + +K Sbjct: 179 --MLDGDELNATLVCLSTGGRWSEVSNLKAEHIINQMVTFMKTKNGKRRTIPVSQDLIKR 236 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATA 304 + G+ + + + ++ H +R AT G Sbjct: 237 IKTKNSGRLFNA--------SYYKVRNALREVKPDLPDGQAVHVLRHTFATHFIMNGGNI 288 Query: 305 HELMATYGWKTVDQAETYTKGA 326 L G + Q TY A Sbjct: 289 ITLQRILGHSNIQQTMTYAHFA 310 >gi|15616113|ref|NP_244418.1| integrase (phage-related protein) [Bacillus halodurans C-125] gi|10176175|dbj|BAB07270.1| integrase (phage-related protein) [Bacillus halodurans C-125] Length = 378 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 43/353 (12%), Positives = 99/353 (28%), Gaps = 39/353 (11%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 + ++G+ Y + + A + Sbjct: 6 KMKNGRWRYRVSYKENGKYKTKTKGGFRTKKEAELAAAELEGQLHKGYDINAGDQLFSEY 65 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA- 133 + + + G + ++ + + + D + +T + + + T S+A Sbjct: 66 MRNWYEVFRKGKKSEDNDNDIRRAVEFVEKYLPDVKLKDLTREMYQKALNEYGETHSTAS 125 Query: 134 -IQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + T MR K A+ + +P +V + + K E I+ E+ + Sbjct: 126 VKKHHTYMRACLKEALADGIIYKDPTFNVVAVGKVEPKNEEIKYLNYEEAAKLLRVTFGN 185 Query: 190 SQPRLAFEFL----LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP------- 238 Q R ++ L +G R S+ + ++ KT + Sbjct: 186 LQQRYISRYIILFALATGARFSEIIGLTWDCVDFENKTVTINKTWDHKYKKWFDNTKNYA 245 Query: 239 ---------------------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277 + + FIN+ + + + + Sbjct: 246 SKRTITVDDHTLSILKDLKRKQAQLAIKTGLRNEHNLVFINSKFELVTNNAVNKTLRLLC 305 Query: 278 TKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADR 328 KA + + HG+R A++ G + G K + +TY+ D Sbjct: 306 KKANIKEITCHGLRHTHASMLLFKGVNIKYVSRRLGHKDIVTTLQTYSHIMDE 358 >gi|83310590|ref|YP_420854.1| integrase [Magnetospirillum magneticum AMB-1] gi|82945431|dbj|BAE50295.1| Integrase [Magnetospirillum magneticum AMB-1] Length = 321 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 43/331 (12%), Positives = 82/331 (24%), Gaps = 18/331 (5%) Query: 13 KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 + GK G G+R R + Y +A I P+ T+ Sbjct: 2 RIVDFRGKWCAVVHVG-GKRFRRSLGNLDATPDNYPAAQRACADLERAIAQPKSD--TIA 58 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132 ++ Y + + + +I R R P++ Sbjct: 59 DIVDAYLADTKAI-----TSEYMRWMWGVLKPHCAGLRPDQIDRGWCREYASKRGKAPAT 113 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 + ++ + +WA E P R T+ + + Sbjct: 114 IRKEISFLAAAIRWAKGD----AGGGAVFELPSPPPPRDRWLTRPEFMRLLDAAQPHPHL 169 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQN---NIFSIKTQKTGTIITVELPDGFMKLLAMTP 249 L +G R + IF V + +L Sbjct: 170 VTFLHLALATGARKEAILELTWPQVDFSAGRIFLGNKPGGKARAVVPMTKSLRTVLQAQN 229 Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELM 308 +E + F A AG++ + H +R +A A G + ++ Sbjct: 230 QRREDSGYVVEYGGAKVGNIKKAFATAARNAGLDDVTPHDLRHTAAVWMAADGVSMEKIA 289 Query: 309 ATYGWKTVDQAET-YTK-GADRIRLGIKNSR 337 G E Y + D ++ Sbjct: 290 QYLGHSDHKITERVYARFSPDHLKDAAAALE 320 >gi|312136007|ref|YP_004003345.1| integrase family protein [Caldicellulosiruptor owensensis OL] gi|311776058|gb|ADQ05545.1| integrase family protein [Caldicellulosiruptor owensensis OL] Length = 291 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 31/291 (10%), Positives = 84/291 (28%), Gaps = 26/291 (8%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR------ 126 + ++ + + N+ S+ + ++ ++ + K + + Sbjct: 2 DWLKKFEEDLKQTGKSQNTVASYCADINEFLQWFEETYANKFDGRILEQDAREYRNYLLN 61 Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 K PSS + + S++ ++ ++ + I+ +++++ + K Sbjct: 62 VVKQKPSSINRKMASLKNFNQFLIQVGTGTEVNICGISVADIHDREIKTISRKELNRLKR 121 Query: 185 FWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQ---------NNIFSIKTQKTGTII 233 R L +G+R S+ VQ + + +++ K Sbjct: 122 AVYASGNKRDIALIELLINTGVRVSELVSLTVQDIHLTERNGSQNYSYIAVRNGKGNKYR 181 Query: 234 TVELPDGFMKLLAMT---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGV 289 + L + L + + + K AG+ SAH + Sbjct: 182 EIPLNSQVKRALEEYLSTRSSSSDKIFISQRGPLRRESVDKIIKKYCRLAGIEEISAHVL 241 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAET-YTKGADRIRLGIKNSRRI 339 R T + G +V Y + + + ++ Sbjct: 242 RHTFCTRLVAENVPLPIISKLAGHLSVQTTMDFYVRVSRADKAA--AVEKL 290 >gi|88706575|ref|ZP_01104279.1| integrase [Congregibacter litoralis KT71] gi|88699287|gb|EAQ96402.1| integrase [Congregibacter litoralis KT71] Length = 440 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 56/379 (14%), Positives = 103/379 (27%), Gaps = 59/379 (15%) Query: 14 ERTRHGKII----YYFRKGHGRRIRLPY-PHESTFIPAYMSALT-----GSTPKREYINS 63 R +G Y + G RR ++ T A A G Sbjct: 36 RRNSNGTTTALLGYRNKYGQRRRYKVGRITDTYTITQARDDADDLLTDIGRGADPLGEKQ 95 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRI-SFESYFDQIIRKSGDFDYRKITTKHIRSG 122 + + L+ Y +SA + A +++ + G +++ +R Sbjct: 96 STRNALNIDQLLDAYLESAKFAGKAESTQYMDKSRIKRHLRPLLGPVKVEQLSRDKVRRL 155 Query: 123 VESRKHTPSS--------------------AIQFLTSMRVLFKWAVRQEYVAINPCLSV- 161 + ++ A + + +F WA+ + NPC V Sbjct: 156 FSDIRDGKTATVEKTSKKRGKARVTGGESVARSSVKLLSAIFTWAIEEGLATENPCKGVN 215 Query: 162 -----------ERPKRKTEGIRPWTKEDMQQFKS-----FWSEGSQPRLAFEFLLYSGLR 205 E P++ + + A L ++G R Sbjct: 216 VGQSGVREAILETPEQYKSLFDALDRMQVSNIDPDDPGEVTPIPDAAANAIRVLAFTGAR 275 Query: 206 CSDSCRAGVQHLQ--------NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI 257 S+ A + TG + LP ++ E F+ Sbjct: 276 KSEITEARWSWVNIDAGTLTVPPKSHKSGHITGKPKVIPLPSPARAVIESLTRHGEDDFV 335 Query: 258 NNDKQKMNATQF-SIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWK 314 + S + +AG+ H +R TI A GA A ++MA G Sbjct: 336 FPATRGGGGISLPSKMWIQIRKEAGLPDGITNHSLRHSLGTIMAVQGAEAAQIMAALGHS 395 Query: 315 TVDQAETYTKGADRIRLGI 333 + + Y A R + Sbjct: 396 QLSTTQRYIHIARDARAAM 414 >gi|238764997|ref|ZP_04625934.1| Integrase [Yersinia kristensenii ATCC 33638] gi|238696766|gb|EEP89546.1| Integrase [Yersinia kristensenii ATCC 33638] Length = 334 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 53/323 (16%), Positives = 91/323 (28%), Gaps = 31/323 (9%) Query: 19 GKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76 GK I Y G+R+R A+ + ++ + L LI Sbjct: 9 GKWICECYPAGREGKRVR-KQFATKGEALAFERFTMELVDNKPWLGEKQDTRL-LSELIE 66 Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK------------HIRSGVE 124 + ++ L+ S + R GD T K I G Sbjct: 67 IWHRAHGIT-LSDG--KSRHQVLLNMCRDLGDPRAIDFTAKTFSQYREQRLNGKILRGTR 123 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 ++ TP + L MR +F R E+ NP V + + + + TKE + Sbjct: 124 TKGVTPRTLNIELAYMRAMFNELSRLSEWRYDNPLRGVRQYRTHEQEMAFLTKEQIVNLL 183 Query: 184 SFWSEGSQPRLAFEF--LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 + P LA L +G R S++ + + K ++ + + Sbjct: 184 KECENSTVPELATVVRLCLATGARWSEAESLTHTQVMPYKVTYTKTKGKRNRSIPISEEL 243 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAG 301 L + F K K + +H +R A+ G Sbjct: 244 FNSLPKKTGRLF---------PSCYSAFRTALKRTNIKLPDRQCSHVLRHTFASHFMMKG 294 Query: 302 ATAHELMATYGWKTVDQAETYTK 324 L G + Y Sbjct: 295 GNILVLQRILGHTDIKMTMRYAH 317 >gi|329996334|ref|ZP_08302445.1| prophage DLP12 integrase [Klebsiella sp. MS 92-3] gi|328539428|gb|EGF65438.1| prophage DLP12 integrase [Klebsiella sp. MS 92-3] Length = 387 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 58/380 (15%), Positives = 117/380 (30%), Gaps = 58/380 (15%) Query: 15 RTRHGKIIYYFRKGHGRRIRLP-YPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 R G +F G+R+R + L + + I T + Sbjct: 4 TLRGGVWHCHFFTPSGKRVRRSLGTGDKKQAQELHDKLKAEAWRVDQIGD--LPVRTFEE 61 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP--- 130 + + S ++ + ++ D KIT + I V + Sbjct: 62 CCIRWLREKDHK----RSLDDDKTKIEFWLQHFSGRDVSKITAEEIHEAVNGMINRKHLQ 117 Query: 131 --------------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164 ++ Q L+ +R L + A ++ I ++ Sbjct: 118 VWESKRDAAMRKGKPVPEYKPRQVSQATKAQHLSFIRSLLR-AAANDWGWIKTAPVIKTR 176 Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 K ++ IR T+E+ ++ E +P + F L +GLR S+ Q + Sbjct: 177 KPISKRIRWLTREEAERLIECMPESIKPVVIFA--LATGLRRSNIIGLEWQQVDMQRKVA 234 Query: 225 KTQKTG----TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF----------- 269 I V L D ++L + + K Sbjct: 235 WVNPENAKAGKAIGVALNDTACRVLRDQIGKHSRWVFVHTTAKHRPDGTLTPAVRKMRVD 294 Query: 270 -SIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 + ++A KAG+ + H +R A+ +G L GW++++ Y A Sbjct: 295 DNNAWRAGLKKAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAP 354 Query: 328 RIRLGIKNSRRISSVVDSDD 347 +++R+I ++ + D Sbjct: 355 NH--LTEHARKIDAIFGASD 372 >gi|313633842|gb|EFS00566.1| DNA integrase [Listeria seeligeri FSL N1-067] Length = 359 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 54/344 (15%), Positives = 103/344 (29%), Gaps = 39/344 (11%) Query: 12 TKERTRHGKII--YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 ++ + G +Y++ G+R++ T A + S Sbjct: 4 YRDEDK-GNWFASFYYQDWKGKRVKKLKRGFKTKKEA------QEWENSFKLQSENSLDM 56 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR-- 126 K ++ Y KS + N+ IS E + +II G+ +I I Sbjct: 57 KFKDFVNIY-KSDIKTRIKYNTWISKEYIINLKIIPAFGERKINEIKPSDIIQWQNELIG 115 Query: 127 -------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP--WTKE 177 +P+ + +F AVR + NP +V K WTKE Sbjct: 116 YKNEQGKGFSPTYLKAIHNQLTAIFNHAVRFYDLKSNPARTVGCMGSKKSDKEMLVWTKE 175 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG----------------VQHLQNNI 221 + +F + AFE L + G+R + Q ++ Sbjct: 176 EYLKFSDSMMDKDISFHAFEILYWCGIRVGELLALTPTDFNFAEGTVSITKSYQRIKGED 235 Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 + + +PD + + + + K A + Sbjct: 236 IITTPKTEKGKRIINMPDFLVDEMQDYIKRLYGCKPKSRIFPVTKAVLYSEMKRGAMEQN 295 Query: 282 VNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + K H +R ++ D G +A + G +++D Y Sbjct: 296 IKKIRIHDLRHSHVSLLIDMGFSAVAIADRVGHESIDIIYHYAH 339 >gi|296170210|ref|ZP_06851803.1| integrase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895086|gb|EFG74804.1| integrase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 387 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 50/365 (13%), Positives = 105/365 (28%), Gaps = 41/365 (11%) Query: 18 HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGST-----------PKREYINSPRK 66 G+ + L + ++ A P E + Sbjct: 25 SGRWQASYLHNGAVYKALATFPTKSSAGHWLQAEEDLIDLDRRRPGEWTPPAERAARRQA 84 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVES 125 + TL+ + + + LA +R ++ + + I+ GD +IT +H+R+ Sbjct: 85 EKLTLRTYANTWLDNK--TKLARRTRDNYRGHLDNHILPALGDLGLAEITPEHVRTWFAG 142 Query: 126 RKHTPSSAI-QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + Q + +F AV + + NPC + K + Q + Sbjct: 143 LGTEHDTRNAQAYAVLNGVFNTAVADDLIDRNPCRIKGAAQVKHAKRSVVLLDAAQLTEL 202 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-----------------QNNIFSIKTQ 227 RLA + GLR + + Sbjct: 203 AVKMPDDARLAVLLAGWCGLRKGEVFALRRCDIAADGSTVRIERAVTYREGKFEVGPTKT 262 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA------TQFSIWFKAKATKAG 281 + + P +L + + +F ++A G Sbjct: 263 RESRRVVSVPPHVRPAVLDHLARHTAEGDEALVFTEPSTGSFAGEKRFRTAWEAAREAIG 322 Query: 282 -VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 H +R + ++A GAT ELM G + + + Y A+ + + ++S Sbjct: 323 QPELHFHDLRHAAGVMAAQTGATLRELMDRLGHTSPNMSMRYQHTAEGRAAAL--ADKLS 380 Query: 341 SVVDS 345 ++ + Sbjct: 381 ALAAT 385 >gi|168185133|ref|ZP_02619797.1| tyrosine recombinase [Clostridium botulinum Bf] gi|182671818|gb|EDT83779.1| tyrosine recombinase [Clostridium botulinum Bf] Length = 327 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 44/304 (14%), Positives = 98/304 (32%), Gaps = 48/304 (15%) Query: 77 EYRKSAH-WGSLAVNSRISFESYFDQIIRKSG--------DFDYRKITTKHIRSGV---- 123 Y + + N+ ++ R + D + + K I Sbjct: 13 AYLSYMDTIQNKSSNTIEGYKLDLILFFRFLKLSKNNLPLNTDIKDVCIKDIDENFLKSI 72 Query: 124 -------------ESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTE 169 R + ++ + + ++ F + + + + +NP ++E PKR Sbjct: 73 SLIDIYNFLDYIKNYRDNCSNTRARKVAVLKSFFNYLKNKVKIIELNPTKNLETPKRPKR 132 Query: 170 GIRPWTKEDMQQFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 + ++ + + + L GLR S+ C + +++N+ I Sbjct: 133 QPVYLSLKESEMLLDAVKIKNGRNKERDYAIITLFLNCGLRLSELCNIKLSYIRNDTLII 192 Query: 225 KTQKTGTIITVELPDGFMKLLAMT-----------PIGKETFFINNDKQKMNATQFSIWF 273 + T+ L + +K + + F++ KQK+N Sbjct: 193 TGKGD-KQRTIYLNNSCLKAINEYLNVRNKLKNIKDKDSDYLFLSERKQKINKRSVQRIV 251 Query: 274 KAKATKAGVNK--SAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGA-DRI 329 + AG++K + H +R +AT+ G L G + + YT D + Sbjct: 252 QKFIEYAGLDKKYTVHKLRHTAATLLYKYGEVDIRNLQVILGHENISTTTIYTHVDKDEL 311 Query: 330 RLGI 333 R + Sbjct: 312 RSAL 315 >gi|116749926|ref|YP_846613.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB] gi|116698990|gb|ABK18178.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB] Length = 381 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 51/350 (14%), Positives = 110/350 (31%), Gaps = 33/350 (9%) Query: 23 YYFRKGHGRRIRLPYPHESTFIPAYMSALT-GSTPKREYINSPRKKPT-----------T 70 YY R G ++ + F +A G KR + P + T Sbjct: 30 YYIRYRRGGKL-IEEKAGRQFRDDMSAARAAGIRAKRMEGDQPTNEERREAEREVKERWT 88 Query: 71 LKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--K 127 + L EY++ + + + I GD + ++ + Sbjct: 89 ITRLWEEYKRGTPGLKGI----VTDENRFSKHIKPIFGDKEPGELVPLDVDRLRVKMLKT 144 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 H P++ L +R + + VR++ + + P+ + E T +++ + S Sbjct: 145 HKPATVRNALELLRRIVNFGVRKQ-LCPCLSFQIPMPRVRNEKTEDLTPDELARLLKALS 203 Query: 188 EGSQPRLAFEFLL--YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP-DGFMKL 244 E ++A L ++G+R + + + + I + + +P + Sbjct: 204 EEPNTQVAHIVKLALFTGMRRGEILKLRWTDIDLDRGFISIRDPKGGVDQRIPLSESARR 263 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA---HGVRKFSATISADAG 301 + ++ F+ + T + A + K HG+R A+ A +G Sbjct: 264 ILANHPKTDSLFVFPGRNGAQRTDINKSLNRIKEAAELPKDFRMLHGLRHAFASSLASSG 323 Query: 302 -ATAHELMATYGWKTVDQAETYTKGADR--IR---LGIKNSRRISSVVDS 345 + L K+ Y D R L + + D+ Sbjct: 324 EVDMYTLQKLLTHKSPTMTARYAHLRDESLRRASDLAGEIIEKAVKKKDN 373 >gi|254498879|ref|ZP_05111584.1| putative integrase/recombinase [Legionella drancourtii LLAP12] gi|254351864|gb|EET10694.1| putative integrase/recombinase [Legionella drancourtii LLAP12] Length = 335 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 37/312 (11%), Positives = 80/312 (25%), Gaps = 40/312 (12%) Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESY---FDQIIRKSGDFDYRKITTKHI 119 P L +S Y +L+ N+ ++ + R + K+ + + Sbjct: 2 KPTDFSIYLSRFLSNYLA--GQRNLSPNTIKAYRDVFILLLRFCRDVKNIPIEKLQLEQV 59 Query: 120 R---------SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170 + R TP + LT++ F++ ++ + + C + + Sbjct: 60 DVVLIEAFLDHIEKDRHCTPRTLNHRLTTLHAFFRYIQVEDPLYLLQCQRILAIPLRRFV 119 Query: 171 IRPWTKEDMQQ-------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223 + EG + + L +G R + V ++ + Sbjct: 120 RPEVSYLSKDHLAALLAQPNLGKPEGRRDVVLLSTLYDTGARVQELIDLTVGDVRLKTPA 179 Query: 224 IKTQ--KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------------- 268 K I V L D LL + Sbjct: 180 QVRILGKGRKIRVVPLMDNTANLLQSYLHENNLLLPETFDYPLFRNNQGNKLTRVGVNYI 239 Query: 269 ---FSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 + + + + S H +R G + + G + E Y + Sbjct: 240 LQKYERLVREASPQYKQRISPHTLRHTKGMHLLQGGVSLDIIRDFLGHVDIKTTEIYARA 299 Query: 326 -ADRIRLGIKNS 336 + R I+ Sbjct: 300 NLEMKRAAIEKV 311 >gi|194446198|ref|YP_002043286.1| site-specific recombinase, phage integrase family [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194404861|gb|ACF65083.1| site-specific recombinase, phage integrase family [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 326 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 41/307 (13%), Positives = 97/307 (31%), Gaps = 23/307 (7%) Query: 26 RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85 R G+RIR A+ T + ++ R TL L+ + K H Sbjct: 18 RGRDGKRIR-RKFERKAEAVAFER-YTIANASQKEWAGQRADRRTLAELLDVWWK-YHGQ 74 Query: 86 SLAVNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTS 139 + ++ F+ +++ GD +++ + + +R + ++ + + Sbjct: 75 NHEHGTKE-----FNHLLKTISGIGDMPVSRVSKRALMDYRSTRLRDGISAATINRDMYR 129 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199 + +F ++ + + + P + + ++ + G L Sbjct: 130 LSGMFTKLIQLDEFSGQHPIHGLPPLAEANPEMTFLEKSEIEKLLSVLVG-DDLLVALLC 188 Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259 L +G R ++ + + + K G TV ++ K + Sbjct: 189 LSTGGRWTEVATLKPAQITSCRVTFLKTKNGKKRTVP--------ISAELEKKVKEEASA 240 Query: 260 DKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 K++ +F + N++ H +R A+ G L G ++ Q Sbjct: 241 KLFKVDYEKFCGILRRVKPDIPPNQATHILRHTFASHFMMNGGNIIALQQILGHASIQQT 300 Query: 320 ETYTKGA 326 Y A Sbjct: 301 MAYAHLA 307 >gi|88813056|ref|ZP_01128298.1| Tyrosine recombinase XerC [Nitrococcus mobilis Nb-231] gi|88789689|gb|EAR20814.1| Tyrosine recombinase XerC [Nitrococcus mobilis Nb-231] Length = 301 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 37/273 (13%), Positives = 84/273 (30%), Gaps = 22/273 (8%) Query: 74 LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYR---KITTKHIRSGVESRKHT 129 + + LA +R + + + G ++ HIR + R + Sbjct: 4 WLERFDAHLRTERRLARLTRQHYRRDLETLAGYCGALGLSGWEQVNATHIRRFIAWRHRS 63 Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 S + L+S+R L+++ +R+ NP V PK + ++ Sbjct: 64 GLAGRSLQRMLSSIRTLYRYLIREGVTRSNPGTGVRAPKTRQRLPEALDVDETAHLLDEP 123 Query: 187 SEGSQPR----LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 R FE L GLR ++ + ++ + V + Sbjct: 124 PASDPLRVRDVAMFELLYSCGLRLAELAGLSTDAVTGREAELRVTGKGCKMRVVPIGRQA 183 Query: 242 MKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRK 291 L + F+ ++++ + + A + G+++ H +R Sbjct: 184 RCALLRWLTLRPGLARSDEPALFVARHGRRLSHRSIQVRLERLAQRRGLHRRVHPHMLRH 243 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324 A+ ++ + G + + YT Sbjct: 244 SFASHLLESSGDLRAVQELLGHAHIGTTQVYTH 276 >gi|314952603|ref|ZP_07855596.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133A] gi|313595291|gb|EFR74136.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133A] Length = 330 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 48/300 (16%), Positives = 99/300 (33%), Gaps = 41/300 (13%) Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK 127 TT + L + + + +S + + I+ G+ KI+ + + V Sbjct: 17 TTFQELYELWIDNYRTR-VKPSSVAVAQRFCKNHILPAFGELRLDKISVSYCQKQVNEWH 75 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT--EGIRPWTKEDMQQFKSF 185 T + +FK+ V E NP P++ + ++ +TK+ +Q F Sbjct: 76 KTLKQYGFLRKTTAQIFKFGVAMEVCKDNPMSKTLLPRKIEEEQPLKFYTKDQLQLFLQN 135 Query: 186 WSEGSQPRLAFEFLL--YSGLRCSDSCRAGVQHLQNNIFS-----------------IKT 226 E + +L F L Y+G+R S++ + + + Sbjct: 136 TKENNSVKLYTFFRLLAYTGMRKSEALALQWEDIDYFNKTITIGKTIAQDEFNQVVLQVP 195 Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF---------------SI 271 + + T++L D +K L + + I + QF + Sbjct: 196 KTKNSSRTIQLDDFTLKQLRIWQQEQMKIMILYGYNTNSPKQFLFTTNTNKLYYPQVVND 255 Query: 272 WFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADR 328 W K + + HG R ++ ++GA+ E+ G K + Y + Sbjct: 256 WLDWIYKKTPMEPQITPHGFRHTHCSLLFESGASIKEVQERLGHKDIKTTMNIYAHVTPQ 315 >gi|297617958|ref|YP_003703117.1| integrase family protein [Syntrophothermus lipocalidus DSM 12680] gi|297145795|gb|ADI02552.1| integrase family protein [Syntrophothermus lipocalidus DSM 12680] Length = 280 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 36/261 (13%), Positives = 79/261 (30%), Gaps = 24/261 (9%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---------SGVESRKHTPSSAIQF 136 L + ++ R + + + + + +R P++ + Sbjct: 9 ELNRGTARAYREDLLDFSRWFAETNGESLEPHLVTSIDLKEYQSHMILNRGLKPATVNRR 68 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196 + ++R +W Q + P +R + + +K + ++F + R Sbjct: 69 MAAIRAWMRWCQEQGLIENLP-RWPKRAAQVQHAPKALSKREQERFLRAVEKEGNRRDVA 127 Query: 197 EF--LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT---GTIITVELPDGFMKLLAMTPIG 251 +L++GLR ++ R V + + K T V L ++ Sbjct: 128 LIGLMLFAGLRVGEAARVRVSDVSISDRKGKVSITGKGMKHREVPLGFDARNMVRDWLNH 187 Query: 252 KETFFINNDKQK------MNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGA 302 + ++A K A +A + + H +R AT G Sbjct: 188 QAQHAQQEWLFPGQNGGHISARAVQHMIKKYAWQARIEPQKITPHVLRHTFATNLLRDGV 247 Query: 303 TAHELMATYGWKTVDQAETYT 323 + A G +D YT Sbjct: 248 DLVTVAALLGHSRLDTTARYT 268 >gi|170769173|ref|ZP_02903626.1| site-specific recombinase, phage integrase family [Escherichia albertii TW07627] gi|191167584|ref|ZP_03029395.1| site-specific recombinase, phage integrase family [Escherichia coli B7A] gi|300926544|ref|ZP_07142332.1| site-specific recombinase, phage integrase family [Escherichia coli MS 182-1] gi|170121825|gb|EDS90756.1| site-specific recombinase, phage integrase family [Escherichia albertii TW07627] gi|190902345|gb|EDV62083.1| site-specific recombinase, phage integrase family [Escherichia coli B7A] gi|294492327|gb|ADE91083.1| site-specific recombinase, phage integrase family [Escherichia coli IHE3034] gi|300417435|gb|EFK00746.1| site-specific recombinase, phage integrase family [Escherichia coli MS 182-1] gi|315296162|gb|EFU55470.1| site-specific recombinase, phage integrase family [Escherichia coli MS 16-3] gi|324116116|gb|EGC10040.1| phage integrase [Escherichia coli E1167] Length = 331 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 56/322 (17%), Positives = 104/322 (32%), Gaps = 24/322 (7%) Query: 14 ERTRHGKIIYYFRK--GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 ++ G+ R G+RIR A+ + + +E++ P TL Sbjct: 4 KKLDDGRYEVDVRPQGADGKRIR-RKFKTKGEAQAFERHVLVNYHNKEWLEKP-ADRRTL 61 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHI---RSGVES 125 L+ + + + II K + ++T K I R + + Sbjct: 62 TELLGRWW---IYHGKSHERGDIERGRLTTIIAKFAEMGVSRADQLTKKTITDYRVVMMN 118 Query: 126 RKHTPSSAIQFLTSMRVLF-KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 P+S + L M +F K EY + NP V+R + + + E++ + S Sbjct: 119 DGLKPASVNRHLAIMSGMFTKLIDAGEYHSHNPFREVKRLREAVTEMAFLSSEEITRLLS 178 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 A L +G R S+ +H+ N + + K G T+ + +K Sbjct: 179 --MLDGDELNATLVCLSTGGRWSEVSNLKAEHIINQMVTFMKTKNGKRRTIPVSQDLIKR 236 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATA 304 + G+ + + + ++ H +R AT G Sbjct: 237 IKTKNSGRLFNA--------SYYKVRNALREVKPDLPDGQAVHVLRHTFATHFIMNGGNI 288 Query: 305 HELMATYGWKTVDQAETYTKGA 326 L G + Q TY A Sbjct: 289 ITLQRILGHSNIQQTMTYAHFA 310 >gi|323138436|ref|ZP_08073505.1| integrase family protein [Methylocystis sp. ATCC 49242] gi|322396232|gb|EFX98764.1| integrase family protein [Methylocystis sp. ATCC 49242] Length = 428 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 50/384 (13%), Positives = 115/384 (29%), Gaps = 52/384 (13%) Query: 14 ERTRHGKIIYYFRKGH----GRRIRLPYPHESTFIPAYMSALTG-----STPKREYINSP 64 GK +YY + +R+++ + T A AL + Sbjct: 32 RVHPTGKRVYYVDYRNAGGARKRMKIGDHGKITTDEARKMALATLGGVVKGDDPLTERTT 91 Query: 65 RKKPTTLKWLISEYRKS--------AHWGSLAVNSR-ISFESYFDQIIRKSGDFDYRKIT 115 R++ T+K L ++Y + ++ I+ G +++T Sbjct: 92 RRESITVKELCADYMAAAEKGLIFGKKRRPKKPSTISQDHARIDRHIVPLLGKKLVKELT 151 Query: 116 TKHIRSGVESRKHTPSSA---------------------IQFLTSMRVLFKWAVRQEYVA 154 + + T +A + + + WAV + + Sbjct: 152 RADVAKFIRD-VTTGKTALDLPSDKPRGRVIVRGGAGTAARAANFLGAVLTWAVHEGIID 210 Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL------YSGLRCSD 208 NP V+R + R T ++ + + + ++ + +G R + Sbjct: 211 SNPAHGVKRQADQKRTRR-LTPDEYRALGNALRQAEDEMATWQGVAGARLITLTGCRLGE 269 Query: 209 SCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN--A 266 + + + Q T + + + + + Sbjct: 270 IAKLRWSEVDEAAGCFRLQDTKEGASTRPMGRAVFDILAGVDRVDGSPYVLPAVRGTGAY 329 Query: 267 TQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 + +F+ A +AG+ + H +R A+ +AD G + A G Y Sbjct: 330 GGLTGFFEKVAARAGLQGVTPHTMRHSFASTAADLGFAESTIAAMLGHAAGSVTARYVHH 389 Query: 326 ADRIRLGIK--NSRRISSVVDSDD 347 D + + + RIS+++D + Sbjct: 390 LDAVLIAAADRVAARISAMLDGRE 413 >gi|227891778|ref|ZP_04009583.1| phage integrase [Lactobacillus salivarius ATCC 11741] gi|227866437|gb|EEJ73858.1| phage integrase [Lactobacillus salivarius ATCC 11741] Length = 381 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 57/367 (15%), Positives = 107/367 (29%), Gaps = 51/367 (13%) Query: 11 VTKERTRHGKIIYYFRK--------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62 + K + Y FR G R IR + + +Y Sbjct: 4 IQKYLDKDENTRYKFRYYAGVDELTGKQRYIRRQGFTSEEDAKNELLKIKYLVSTNQYFK 63 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRS 121 + ++ E+ + H + ++ E + D KIT +H + Sbjct: 64 DVKSGK--FGDVLDEWL-TLHKTRVKASTYHIIETRVTKYVRPYFNDMYVDKITVRHCQD 120 Query: 122 GVES-RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 V TP + ++ ++ +A+R + NP L V +PK++ + Sbjct: 121 FVSKAFVTTPKGYVYLISIVKNTLDYALRLGMIESNPMLYVIKPKKQATISDKHDNFYNK 180 Query: 181 QFKS-----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--- 232 + F L YSG+R + L +I KT Sbjct: 181 DELKKFLEVAKYYNQEKYTIFRLLAYSGIRIGECLALTWHDLDYKNNTITINKTLARTDK 240 Query: 233 -------------------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMN-- 265 + + +LL + + + K + Sbjct: 241 GITIQTPKTKASNRVISLDVETIQILKSWQLEQRKQLLKIGINSMNKHQLIFNSNKNSFI 300 Query: 266 -ATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETY 322 ++ + K A KAG+ ++HG R AT+ +G ++ A G V + Y Sbjct: 301 FSSVITYDIKQIAKKAGIHPITSHGFRHTHATLLFASGMDIKQVQARLGHSKVQTTLDVY 360 Query: 323 TKGADRI 329 T Sbjct: 361 THTMKDK 367 >gi|254039131|ref|ZP_04873181.1| integrase [Escherichia sp. 1_1_43] gi|226838567|gb|EEH70596.1| integrase [Escherichia sp. 1_1_43] Length = 326 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 43/309 (13%), Positives = 92/309 (29%), Gaps = 27/309 (8%) Query: 26 RKGHGRRIRLPYPHESTF--IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83 R G+RIR + ++ Y A R TL L+ + K H Sbjct: 18 RGRDGKRIRRKFERKAEAVAFERYTIAYASQKE----WAGQRADRRTLSELLDIWWK-YH 72 Query: 84 WGSLAVNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGVESR---KHTPSSAIQFL 137 + ++ F+ +++ GD +++ + + R + ++ + + Sbjct: 73 GQNHEHGTKE-----FNHLLKTISGIGDIPVSRMSKRALMDYRSMRLRDGISAATINRDM 127 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197 + +F ++ + + + P E + K L Sbjct: 128 YRLSGMFTKLIQLDEFSGQHPI-HGLPPLAEANPEMTFLEKAEIEKLLNVLDGDDLLVAL 186 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI 257 L +G R ++ + N + K G TV ++ K Sbjct: 187 LCLSTGGRWTEVATLKPAQITNCRVTFLKTKNGKKRTVP--------ISEELEKKVKEEA 238 Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317 + K++ +F + N++ H +R A+ G L G ++ Sbjct: 239 SAKLFKVDYEKFCGILRRVKPDIPPNQATHILRHTFASHFMMNGGNIIALQQILGHASIQ 298 Query: 318 QAETYTKGA 326 Q Y A Sbjct: 299 QTMAYAHLA 307 >gi|91205255|ref|YP_537610.1| integrase [Rickettsia bellii RML369-C] gi|239947373|ref|ZP_04699126.1| integrase [Rickettsia endosymbiont of Ixodes scapularis] gi|91068799|gb|ABE04521.1| Integrase [Rickettsia bellii RML369-C] gi|239921649|gb|EER21673.1| integrase [Rickettsia endosymbiont of Ixodes scapularis] Length = 388 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 48/312 (15%), Positives = 105/312 (33%), Gaps = 16/312 (5%) Query: 28 GHGRRIRLPYPHESTFIPAYMSALTGSTPKRE-----YINSPRKKPTTLKWLISEYRKSA 82 RI++ + I A + A + + K T K Y Sbjct: 59 KKYHRIKIGVFPYLSIIDARLKASELKGKIAQGYNPIEEKARLSKEPTFKEFYDRYLDEY 118 Query: 83 HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS-AIQFLTSMR 141 + + + D+ + + I I+ T A +FL + Sbjct: 119 SKINNKR--WKDYAASVDRYAKHLYNRKISTIQKADIQELFNKLTKTGKYGANRFLEVLS 176 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE--GSQPRLAFEFL 199 +F A+ E + +NP + +++ ++ R T+E++ +F + SE + F Sbjct: 177 PVFSKAIEWELLTVNPVIGIKK-HKEQSRDRYLTREEIPRFFTAISEEQNQVMKDFFLIA 235 Query: 200 LYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI 257 LY+ +R + + + + K G + L D +++L ++ ++ Sbjct: 236 LYTSVRKDNVLTMRWEQISFADKQLYLPDTKNGDPHRLPLLDQAVEILKARKEQSDSIWV 295 Query: 258 NNDKQKMNA--TQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWK 314 + + + +K KAG+ H +R+ + A GA + + + Sbjct: 296 FPSETSSSGHLQEPKKAWKRICKKAGIENLRIHDLRRTIPSWMAMTGANQYVIGQLLNHR 355 Query: 315 TVDQAETYTKGA 326 YT+ A Sbjct: 356 DPRSTAVYTRLA 367 >gi|239947433|ref|ZP_04699186.1| integrase [Rickettsia endosymbiont of Ixodes scapularis] gi|239921709|gb|EER21733.1| integrase [Rickettsia endosymbiont of Ixodes scapularis] Length = 387 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 45/328 (13%), Positives = 100/328 (30%), Gaps = 16/328 (4%) Query: 28 GHGRRIRLPYPHESTFIPAYMSALTGSTPKRE-----YINSPRKKPTTLKWLISEYRKSA 82 RI++ + I A + A + + K T K Y Sbjct: 59 KKYHRIKIGVFPYLSIIDARLKASELKGKIAQGYNPIEEKARLSKEPTFKEFYDRYLDEY 118 Query: 83 HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS-AIQFLTSMR 141 + + D+ + I I+ + T A +FL + Sbjct: 119 SKINNKR--WKDYADSVDRYAKHLYPRKISTIQKTDIQELFNNLTKTGKYGANRFLEVLS 176 Query: 142 VLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200 +F A+ E + INP + ++ ++ + + + + F L Sbjct: 177 PVFSKAIEWELLTINPVIGIKKHKEQSRDRYLTREEIPRFFTAIADEQNQVMQDFFLIAL 236 Query: 201 YSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN 258 Y+ +R + + + + K G + L D +++L + ++ Sbjct: 237 YTSVRKDNLLTMKWEQVSFTDKQLYLPETKNGDPHRLPLLDQAVEILKARKEQSTSMWVF 296 Query: 259 NDKQKMNA--TQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKT 315 + + + +K KAG+ H +R+ + A GA + + + Sbjct: 297 PSETSSSGHLQEPKKAWKRICKKAGIENLRIHDLRRTIPSWMAMTGANQYVIGQLLNHRD 356 Query: 316 VDQAETYTKGADRIRLGIKNSRRISSVV 343 YT+ A+ + +R S + Sbjct: 357 PRSTAVYTRLAND--TAREYMQRAVSTI 382 >gi|150009561|ref|YP_001304304.1| site-specific recombinase [Parabacteroides distasonis ATCC 8503] gi|149937985|gb|ABR44682.1| site-specific recombinase [Parabacteroides distasonis ATCC 8503] Length = 387 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 58/382 (15%), Positives = 133/382 (34%), Gaps = 47/382 (12%) Query: 1 MTPSLRLPPFVTKERTRHGKIIYY---FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPK 57 ++ + P + ++ +G + Y ++ G L + + Sbjct: 8 LSTKEKQPVKIRYKKLANGNLSIYLDIYQNGKRNYKFLKLYLVPETNEKAKAINRKNMDL 67 Query: 58 REYINSP------------RKKPTTLKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIR 104 E I + + + K L+ +Y +S A + ++ + S + R Sbjct: 68 AEAIKAQMIIQLNTTIHGLSNQKESSKILLRDYIRSFAETKGKS--TQQNLNSLVYHLER 125 Query: 105 KSG-DFDYRKITTKHIRSGVES--------------RKHTPSSAIQFLTSMRVLFKWAVR 149 G D K+ +I +E RK + +S + ++++ AV Sbjct: 126 SKGTDIQIGKVDKYYIMDFIEYLEDAQIEHTQRNKGRKLSKNSQAMYFKCLKMVLDEAVS 185 Query: 150 QEYVAINPCLSVERPKRKT----EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205 + + +NP LS+++ R + T++++++F + AF +GLR Sbjct: 186 DDIIPLNPILSIKKKYRPSAEKAPKREFLTEDELRRFAGTDHPNELLKRAFMIGCLTGLR 245 Query: 206 CSDSCRAGVQHLQ-----NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND 260 D + ++ S+ +KT + + L + K L + + Sbjct: 246 HCDIKQMKWSNIGVVKNGIECISLVQEKTNDPVDIPLNENIRKWLPEQGNASMEDLVFSG 305 Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 + + + A KAG+NK + H R A ++ + + G +++ Sbjct: 306 LITLGRS--NEILPKWAEKAGINKHLTFHCSRHTFAVLAIAKKVDIYTVSKLLGHQSITV 363 Query: 319 AETYTKGADR-IRLGIKNSRRI 339 E YT+ D + ++ +I Sbjct: 364 TEIYTEVLDNSKKEAMEAIGKI 385 >gi|296271734|ref|YP_003654365.1| integrase family protein [Arcobacter nitrofigilis DSM 7299] gi|296095909|gb|ADG91859.1| integrase family protein [Arcobacter nitrofigilis DSM 7299] Length = 366 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 45/366 (12%), Positives = 103/366 (28%), Gaps = 40/366 (10%) Query: 5 LRLPPFVTKERTRHGKI--IYYFRKGH----GRRIRLPYPHE-------STFIPAYMSAL 51 + + ++ + K YY R + +++ E + ++ L Sbjct: 6 TKYTGVIYRDSITNEKTDKTYYIRYKDINNKTKELKIGKYSEGVRENYCNQKRNEIITKL 65 Query: 52 TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF---DQIIRKSGD 108 N +K K+L +Y ++ ++ + ++ Sbjct: 66 RLGEEPPAMANKKQKNSIAFKYLQDKYFETRRE------TKSKYSDIVTANKHLVPFFEK 119 Query: 109 FDYRKITTKHIRSGVESRKH---------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159 + +T + I++ + K +P S LTS + + +++E + + Sbjct: 120 KNLETLTKEDIKALTKLLKTKTTPKGTQLSPKSRNNILTSFASIINYGLKEELIKNDVTK 179 Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219 +E+ + E R E++ + + L + L +G R L Sbjct: 180 YIEKERIDNERERYLELEEINKLYEEVEHNPRLYLFCKLALTTGGRLGTILNISKMDLDF 239 Query: 220 NIFSIK-TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278 + I + L + + + Sbjct: 240 SNQIITLKDFKNNSTYKTFLTDDVTNLLSNYCKNLNQQDKIFIEPTTIQRQILKILHSLF 299 Query: 279 KAGVNK-------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330 G++K H +R A+ A G + + + Y K A D R Sbjct: 300 NVGIDKEDRKNLVVLHTLRHTFASHLAIKGTPIFTIQKLMNHRDIKMTLRYAKLAPDSGR 359 Query: 331 LGIKNS 336 I+N Sbjct: 360 CAIQNL 365 >gi|242241242|ref|YP_002989423.1| integrase family protein [Dickeya dadantii Ech703] gi|242133299|gb|ACS87601.1| integrase family protein [Dickeya dadantii Ech703] Length = 327 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 50/302 (16%), Positives = 102/302 (33%), Gaps = 16/302 (5%) Query: 28 GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87 +G+RIR + T A+ K+E+ + + L L+ + +L Sbjct: 20 RNGKRIR-RRFEKKTEAVAFERYTLSRADKKEWQHGYGVEHRQLSELVELWWLYYG-QNL 77 Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLF 144 + + + + D + +I + I R + S+ + + + +F Sbjct: 78 KNGLIE--KRHLKRTAAQMDDPEICRINKRSILEFRTRRLYDGISSSTVNRDIYRLSGMF 135 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204 ++ E L P + + + E EG Q RLA L +G Sbjct: 136 SALIKLEIYTGENPLKELPPLPEKQPTVTFLTESEIARLLDTMEGDQYRLAVLC-LSTGA 194 Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264 R ++ + + +N + K G T+ + + +++ GK K+ Sbjct: 195 RWGEASTLRAEQVMHNRVTFTETKNGKNRTIPISEEVTRIIKTRETGKLF--------KV 246 Query: 265 NATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + + F KA +++H +R A+ G L G ++ Q TY Sbjct: 247 DYSAFCEQIKAVKPDIPKGQASHILRHTFASHFVMNGGNLVALQQILGHASIQQTMTYAH 306 Query: 325 GA 326 A Sbjct: 307 LA 308 >gi|331673529|ref|ZP_08374292.1| putative integrase for prophage [Escherichia coli TA280] gi|331068802|gb|EGI40194.1| putative integrase for prophage [Escherichia coli TA280] Length = 341 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 53/335 (15%), Positives = 100/335 (29%), Gaps = 39/335 (11%) Query: 6 RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65 +LPP V + Y + R + + A K E + R Sbjct: 12 KLPPNVYPNK-------YSYVWKPTSRESVTLTAIKDGLAALWK-------KYEETVNNR 57 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 + T L ++ SA++ L+ ++ + + +++ G I +HIR ++ Sbjct: 58 DRAMTFGRLWEKFLASAYYSDLSPRTQKDYLQHQKKLLAVFGKVPADSIKPEHIRRYMDK 117 Query: 126 RK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 R + + A +SM ++ W + YV NPC + R D + Sbjct: 118 RGEQSKTQANHEKSSMSRVYSWGYERGYVKANPCAG---VSKFKAKNRERYVTDKEYQAV 174 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 +A E R SD + + N+ I+ KTG + Sbjct: 175 LSVASPPVFIAMEIAYLCAARISDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQSV 234 Query: 245 LAMTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAG------VNKSAHGVRKFSATI 296 + + N + F+ + AG + + H + Sbjct: 235 IEKAKQLPKSAYVISNQYGNRYMYKGFNEMWVETRNLAGQISGIATDFTFHDL------- 287 Query: 297 SADAGATA-----HELMATYGWKTVDQAETYTKGA 326 G + + G KT Q Y + Sbjct: 288 -KAKGISDYEGSSRDKQLFSGHKTEGQVLIYDRKV 321 >gi|224369185|ref|YP_002603349.1| phage integrase protein (DNA breaking and rejoining enzyme) [Desulfobacterium autotrophicum HRM2] gi|223691902|gb|ACN15185.1| phage integrase protein (DNA breaking and rejoining enzyme) [Desulfobacterium autotrophicum HRM2] Length = 360 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 42/332 (12%), Positives = 93/332 (28%), Gaps = 19/332 (5%) Query: 18 HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77 G + G+ R + + + + + + + L Sbjct: 7 RGNTWWIKYYRQGKYYRESSGSTKKMVAKKLLSRREGDIAKGKTPGVQFDKISFEDLAEN 66 Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS---SAI 134 + + ++ + + + +ITT I + +ESR + + + Sbjct: 67 FLRDYRVNQKKSLTKAT--RSVNHLSTAFERLAVPQITTPRINAFIESRINEGAANATIN 124 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194 + L +++ + +Q ++ P + +R E + + + + Sbjct: 125 RELAALKRMMNIGAQQTPPMVDRV--PHIPMLEENNVRKGFFEHDEFLALRDALPTYLKG 182 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPDGFMKLLAMTPI 250 F SG R S+ ++ + T K T+ L D M + Sbjct: 183 LVTFAYKSGWRVSEITGMQWSNVDLPKRIVWLEIGTTKNKEGRTIYLDDELMDVFNAQRE 242 Query: 251 GKETFFINNDKQKMNATQ------FSIWFKAKATKAGVNKS-AHGVRKFSATISADAGAT 303 ++ N F + +AG+ H +R+ + +G Sbjct: 243 IQKRGQQIVPYIFPNRNGDDKIKVFRRAWVTACRQAGIPNRIFHDLRRTAIRNMVRSGIP 302 Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 M G KT E Y L I Sbjct: 303 ERVAMMISGHKTRSVFERYN-IVSEEDLMIAA 333 >gi|198240906|gb|ABG36697.2| integrase [Salmonella enterica subsp. enterica serovar Newport] Length = 337 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 35/303 (11%), Positives = 83/303 (27%), Gaps = 52/303 (17%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132 ++ R+ + ++ + ++ + IR G + + + + + + S Sbjct: 16 VLDRLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLFWLANERKVS 75 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 ++ L + + + + RP+ T +++ + + Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230 RL + L +G+R S+ + V+ L + +I ++ Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193 Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265 + + A + + M Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253 Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 F FK +AG+ K + H +R AT +G + G V YT Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313 Query: 324 KGA 326 Sbjct: 314 HVL 316 >gi|212695321|ref|ZP_03303449.1| hypothetical protein BACDOR_04866 [Bacteroides dorei DSM 17855] gi|212662231|gb|EEB22805.1| hypothetical protein BACDOR_04866 [Bacteroides dorei DSM 17855] Length = 293 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 35/265 (13%), Positives = 92/265 (34%), Gaps = 24/265 (9%) Query: 76 SEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESR---K 127 + + + + + +S+ + + D+ + +R V + Sbjct: 4 DSFLDYLRFERNYSEKTIVSYGIDLIKFEEYIRGKDENVDFTTVDADLVRGWVMNLIEDG 63 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-----F 182 +T +S + L+S+R +++ +++ + +P L + PK K + +M + Sbjct: 64 YTSASVNRKLSSLRSFYRFLLKKGVIGEDPMLKIIGPKNKKPLPVFLKEREMDRLLDDVP 123 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGF 241 G + R+ E +G+R S+ + + T K + + Sbjct: 124 FKEDFTGCRDRMVLEMFYATGMRLSELIGLNDVDVDFSASLIKVTGKRNKQRLIPFGEEL 183 Query: 242 MKLLAMTPIGKET--------FFINNDKQKMNATQFSIWFKAKATK--AGVNKSAHGVRK 291 + + + + FF+ + ++M + + K +K + +S H +R Sbjct: 184 RRAMFVYLKIRNEVLPEKAGAFFVLKNGKRMYPGKVYLLVKRNLSKVVSLKKRSPHVLRH 243 Query: 292 FSATISADAGATAHELMATYGWKTV 316 AT + A + G ++ Sbjct: 244 TFATAMLNNEAELGAVKELLGHSSL 268 >gi|161507474|ref|YP_001577428.1| integrase-recombinase [Lactobacillus helveticus DPC 4571] gi|160348463|gb|ABX27137.1| Integrase-recombinase [Lactobacillus helveticus DPC 4571] Length = 242 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 35/223 (15%), Positives = 79/223 (35%), Gaps = 17/223 (7%) Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + RK SS + ++S+ F++ R++++ I+P + + + + + ++ Sbjct: 1 MQNLADRKLVRSSQARQMSSLHSFFRFLTRRKFIKIDPTQGITLRRGEKKLPEFFFGNEL 60 Query: 180 QQFKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIIT 234 +Q + FE +G+R S+ ++ + N+ +I K Sbjct: 61 KQVFDSLKGNKPLTMRNLALFELFYATGMRVSEVSNLTLRQIDLNLQTILVHGKGNKDRY 120 Query: 235 VELPDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-- 282 V D K L ++ F++N ++ + +AG+ Sbjct: 121 VAFDDHTKKSLVRYLEDARPNLLKDETEQHVFLSNLGNPLSKRGIEYVMQKTFNQAGISG 180 Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 H +R AT + GA + G ++ + YT Sbjct: 181 KVHPHELRHTFATAMLNNGADLRSVQELLGHSSLSATQIYTHV 223 >gi|159905040|ref|YP_001548702.1| integrase family protein [Methanococcus maripaludis C6] gi|159886533|gb|ABX01470.1| integrase family protein [Methanococcus maripaludis C6] Length = 282 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 34/266 (12%), Positives = 85/266 (31%), Gaps = 15/266 (5%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 + Y + L+ +++ +++ + + +R + + + T + Sbjct: 3 DEISKRYLEFCA--GLSKSTKNAYKYGLRTFQKYV-NKRWRDVMVNDVILFYTNHNATKN 59 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 S + L + + WA+ + Y+ NP + R+ + R + ++ + Sbjct: 60 SKMGLLGIVNRFYDWAIEENYLLENPVKKFLKTLRREKKERNYLTTSQAEYLLSNMKKYS 119 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIIT-------VELPDGFM 242 + F+L +G+R S+ +Q + I+ K ++ Sbjct: 120 YYVMTLFILRTGVRISEIRNIKLQDIDFESKCIFIRAGKGKKDRYVFFDNNLEFHIKEYI 179 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQF---SIWFKAKATKAGVNKSAHGVRKFSATISAD 299 K + FIN + ++ + + A + + H +R AT + Sbjct: 180 KERCYRDPDCDNLFINRFGRPVSRRSIIYYTEYLNEVAPNIHIRITPHILRHTFATSMLE 239 Query: 300 AGATAHELMATYGWKTVDQAETYTKG 325 G L G + + Y Sbjct: 240 RGIDLKSLSLILGHENISTTSIYLHK 265 >gi|332176048|gb|AEE25301.1| integrase family protein [Glaciecola agarilytica 4H-3-7+YE-5] Length = 286 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 36/268 (13%), Positives = 80/268 (29%), Gaps = 19/268 (7%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS-- 131 L + L+ ++I + ++ T + +R + + Sbjct: 11 LRQRMIEDMTMRRLSPKTQIGYIRGVKKLAAYL-KRSPEDATAEELRQFQLALAEQGASN 69 Query: 132 -SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 + L+ ++ LF + V L V + +KE+++Q Sbjct: 70 ITINATLSGLKFLFHKTLNLLDVM----LKVSTVPVPRKLPTVLSKEEVKQLIDATHT-I 124 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITV------ELPDGFM 242 + + AF +GLR + V + ++ ++ ++ Sbjct: 125 KYKAAFSVAYGAGLRIGEVVALKVTDIDSSRMLLRIEQGKGKKDRMAMLLTTLCQWYKHA 184 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300 K + G F N + Q S +K+ AG+ S H +R A + Sbjct: 185 KAHHLMLNGGWLFPGQNPLNPIGTRQLSRAWKSACIDAGLTKKVSMHTLRHSFAMHLLED 244 Query: 301 GATAHELMATYGWKTVDQAETYTKGADR 328 + G ++ Y + A + Sbjct: 245 KVDIRVIQTLLGHSKLETTALYAQVASK 272 >gi|323963898|gb|EGB59392.1| phage integrase [Escherichia coli M863] Length = 337 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 48/340 (14%), Positives = 96/340 (28%), Gaps = 47/340 (13%) Query: 11 VTKERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 +T + +GK + Y G+R+R A+ + K+ ++ + Sbjct: 1 MTIRKQPNGKWLCECYPNGRDGKRVR-KQFATKGEAIAFENFTMDEVNKKPWLGEKEDRR 59 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVES 125 L LI + SL + + + I GD ++T E+ Sbjct: 60 H-LSELIELWY------SLYGQTLADPKRLMAKLGIICNGLGDPIASELTAGDFTKYREA 112 Query: 126 R--------------KHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEG 170 R P + ++ +F + + A NP + K Sbjct: 113 RLKGEVRNEDGTLMSPVKPRTVNLEQRNLSSVFGTLKKLGHWSAPNPLAGLPTFKIAEGE 172 Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFE--FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228 + + +++++ + +E P L L +G R S++ + + K Sbjct: 173 LAFLSTDEIKRLLAACAESQSPSLLMIAKICLATGARWSEAENLQGHQISKYRITYTKTK 232 Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---- 284 TV + L T F+ +AG++ Sbjct: 233 GKKNRTVPISQDLYDELPKNRRKLFTPC-------------RKAFERAVKRAGIDLPEGQ 279 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R A+ G L G + Y Sbjct: 280 CTHVLRHTFASHFMMNGGNILVLRDILGHADIKMTMIYAH 319 >gi|23452624|gb|AAN33109.1| VvuIntIA [Vibrio vulnificus] Length = 320 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 36/300 (12%), Positives = 79/300 (26%), Gaps = 53/300 (17%) Query: 80 KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT- 138 A + ++ S+ Q I + H+ + A + Sbjct: 11 DHMRTRHYASKTIQAYISWIKQYIIFHKMAHPSTLNETHVEEFLSYLALEQKVAAKTQAL 70 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198 ++ + ++ + ++ + TK +++ + +L Sbjct: 71 ALNSIMFLYREYFRTPLSNEIKFQKSLLDRKLPVVLTKSELRSLIQH--IDPRYKLHIML 128 Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQK------------------------------ 228 L SGLR + R VQ + + +++ + Sbjct: 129 LYGSGLRVMECVRLRVQDIDYHYGALRIWQGKGGKNRTVTLAKELFPMLKQQEELALRYY 188 Query: 229 ------------------TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS 270 E+ + L + + + +N Sbjct: 189 QKDINTPGYSGVWLTHSLQRKYRGAEMDFNWHYLFPSEKLSIDPESNLLRRHHINEQSLQ 248 Query: 271 IWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 K A AG+ K+ H +R AT ++GA + G V + YT +R Sbjct: 249 RAVKRAAKDAGIEKTVTCHTLRHSFATHLLESGADIRTVQEQLGHSDVKTTQIYTHVLER 308 >gi|291531147|emb|CBK96732.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3] Length = 305 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 91/302 (30%), Gaps = 25/302 (8%) Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGV 123 + K T+ + + + + + I + G + + +T ++ +S Sbjct: 2 KPKNVTIYEAYKMFINEQLFRNNSKRTLIWYNENLSAFFNWLGENKNVDSLTVENYKSYC 61 Query: 124 ESRKH----------TPSSAIQFLTSMRVLFKWAVRQEYVAIN--PCLSVERPKRKTEGI 171 +H SS + +++ + + + ++ + + + K + + Sbjct: 62 TFLQHDYVKRNGQPLKSSSVNSRVRAIKAFYNYCIEEDLLPDFSKKLKATKIRKTEKLPL 121 Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTG 230 + + + R + SGLR + + ++ F I T K Sbjct: 122 DDDEIHTLVSAFGDSALEERNRCWVILMCDSGLRRGEIINLQIGNVHLARGFMIVTGKGD 181 Query: 231 TIITVELPDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKAGV- 282 V L + LA F+N +K F+ + G+ Sbjct: 182 KQRFVPLGELSKISLATYIRKYRNEAKESEPVFVNRFGEKCTINTVKQVFQKLKKQTGIL 241 Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342 AH +R AT G L G + Y A+ +L R+ S Sbjct: 242 RLHAHLLRHTFATNYLVDGGDLETLRLLMGHSDLQVTMMYLHLAENKKLLQ---RKHQSH 298 Query: 343 VD 344 +D Sbjct: 299 LD 300 >gi|289523043|ref|ZP_06439897.1| integrase/recombinase XerD [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503586|gb|EFD24750.1| integrase/recombinase XerD [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 299 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 39/268 (14%), Positives = 91/268 (33%), Gaps = 23/268 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRKHTPSSAIQFLTS 139 + N+ ++ + + I+ + + I +H + S + +S ++ + Sbjct: 23 RGYSENTIEAYMTDIAKWIKFCSNQNLDPIPPRHEYMSRFLKAMASEGKSKASLQRYAAA 82 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLA 195 +R ++ + +V L P ++ + R ++ ++++ S +GS + Sbjct: 83 IRSWNRYLTIEGWVDGEQWLPS-LPSKEQKLPRILSEGEIERLISSCRDGSVLGGRDEAL 141 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT------ 248 FE GLR S+ C ++ + +++ V L + L Sbjct: 142 FELAYGCGLRASEVCSLALEDIDWRAGTLRVIGKGDKERVVPLLGSVKEKLRHYVDAIRP 201 Query: 249 ---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGA 302 + F+ +K++ + + AG+ H +R AT G Sbjct: 202 LLNRREERWLFLTRTGRKLHREDLWRIIRRRGKAAGIPSVRLHPHVLRHSLATHMLRRGL 261 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIR 330 L G ++ E YT +R Sbjct: 262 DLRTLQELLGHASISTTERYTHLDLELR 289 >gi|258515633|ref|YP_003191855.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771] gi|257779338|gb|ACV63232.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771] Length = 323 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 41/296 (13%), Positives = 90/296 (30%), Gaps = 20/296 (6%) Query: 49 SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-- 106 ++G + + + + ++ + + + + Sbjct: 2 RIISGFRKRSIEVPDETGYKIDFDYAVELFKDAYMVDEWSQRTLNYHLENLTAFKKFLTT 61 Query: 107 GDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163 + I+ K + V+S K+ ++ + ++RV F+ +EY+ NP L ++ Sbjct: 62 QAVNISLISAKTLDEYVKSMKNADKKKNTINGRVKTLRVFFRILNEKEYIPDNPALGLKT 121 Query: 164 PKRKTEGIRPWTKEDMQ----QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219 + I P++ E + Q G + + + LL +G+R + C + Sbjct: 122 IRGPKPEIFPFSDEQINALLAQPDRTTFAGLRDYMIMQILLDTGVRLEELCNIKYSDVNL 181 Query: 220 NIFSI--KTQKTGTIITVELPDGFMKLLAMTPIGK------ETFFINNDKQKMNATQFSI 271 I + K TV + + +N D + Sbjct: 182 KTCRILVRKGKGNKSRTVLFGSETRRTIMKYLKVTGDLDAETNLILNQDGNPLKQRSVQD 241 Query: 272 WFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 A+ AG+ S H R A G + L G ++ Y + Sbjct: 242 RISLHASAAGLKGVRPSPHTFRHTFAKKFLMNGGDPYVLRDLLGHNSMSTVIIYLR 297 >gi|283796718|ref|ZP_06345871.1| integrase/recombinase, phage integrase family [Clostridium sp. M62/1] gi|291075602|gb|EFE12966.1| integrase/recombinase, phage integrase family [Clostridium sp. M62/1] Length = 331 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 32/260 (12%), Positives = 81/260 (31%), Gaps = 14/260 (5%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHTPS 131 + + + S + S ++ K G +ITT +R+ +K + Sbjct: 58 ELFIAAKKVEGCSEKSLKYYASTIRTMLDKIG-KQVLEITTDDLRAYLTDYQAEKKSSKV 116 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 + + F W ++Y+ +P + + K ++ E +++ + + + Sbjct: 117 TIDNIRRILSSFFTWLEDEDYILKSPIRRIHKVKSAATIKETYSDESLEKMRDKC-DSLR 175 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPI 250 + L +G+R + R ++ + V L Sbjct: 176 DLAMIDMLSSTGMRVGEMVRLNRDDIRFDERECVVFGKGDKERIVYFDARTKIHLQNYLQ 235 Query: 251 GKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGAT 303 + + +++ + + + + K H R+ AT++ D G Sbjct: 236 SRTDSEPALFVSLRSPHRRLTIGGIELRLRELGKRLDIPKVHPHKFRRTLATMAIDKGMP 295 Query: 304 AHELMATYGWKTVDQAETYT 323 +L G + +D Y Sbjct: 296 IEQLQHLLGHQRIDTTMHYA 315 >gi|320450087|ref|YP_004202183.1| transposase [Thermus scotoductus SA-01] gi|320150256|gb|ADW21634.1| transposase [Thermus scotoductus SA-01] Length = 380 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 51/364 (14%), Positives = 97/364 (26%), Gaps = 43/364 (11%) Query: 9 PFVTKERTRHGKI--IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 + + G+ Y R G R+ T A A T E PR+ Sbjct: 4 KGLKPRKRADGRWEARPYLRMEDGTLKRVSVFG-RTAEEALRKARELVT-LHEKGLLPRR 61 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 P TL+ + SLA + ++ ++ G + I IR ++ Sbjct: 62 DPRTLQAFAEAWLARKE-KSLAAKTLANYRREVGYFLKYLGQKRLQDIRPLDIRQALDRM 120 Query: 127 KHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + + L +R LFK A+ E VA +P +V + + + Sbjct: 121 AAEGLGVRAQKKALLHLRALFKEALGLELVARDPTAAVRLKAERRPKAGRSLEPHEAEAL 180 Query: 184 SFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQ----------------NNIFSI 224 + +A L GLR ++ + Sbjct: 181 LAAFDAWPTWGVGMALRLCLALGLRAGEALGLKWGDIDLEAGTLSVRRAWTCLGGRGHLT 240 Query: 225 KTQKTGTIITVELPDGFMKLLAMTPI--------------GKETFFINNDKQKMNATQFS 270 + + T+ +P + L + + +N + Sbjct: 241 TPKTSRAQRTIPVPRATLGRLRDRWETLVAQGLRPKDLKEWWVFPSEKDPSRPLNPHSLN 300 Query: 271 IWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADR 328 + K G+ H +R ++ GA + G + + Y Sbjct: 301 HALRKMTAKLGIPPVRVHDLRHSYGSLLLANGAPLELVAERMGHASPNVTLSVYRHLLAH 360 Query: 329 IRLG 332 R Sbjct: 361 ERTA 364 >gi|168789717|ref|ZP_02814724.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. EC869] gi|193063225|ref|ZP_03044316.1| site-specific recombinase, phage integrase family [Escherichia coli E22] gi|261223701|ref|ZP_05937982.1| putative phage integrase [Escherichia coli O157:H7 str. FRIK2000] gi|261255890|ref|ZP_05948423.1| putative phage integrase [Escherichia coli O157:H7 str. FRIK966] gi|300823456|ref|ZP_07103586.1| site-specific recombinase, phage integrase family [Escherichia coli MS 119-7] gi|301020189|ref|ZP_07184315.1| site-specific recombinase, phage integrase family [Escherichia coli MS 69-1] gi|301325450|ref|ZP_07218936.1| site-specific recombinase, phage integrase family [Escherichia coli MS 78-1] gi|189370767|gb|EDU89183.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. EC869] gi|192931133|gb|EDV83736.1| site-specific recombinase, phage integrase family [Escherichia coli E22] gi|300398896|gb|EFJ82434.1| site-specific recombinase, phage integrase family [Escherichia coli MS 69-1] gi|300524074|gb|EFK45143.1| site-specific recombinase, phage integrase family [Escherichia coli MS 119-7] gi|300847748|gb|EFK75508.1| site-specific recombinase, phage integrase family [Escherichia coli MS 78-1] gi|320190202|gb|EFW64852.1| Phage integrase [Escherichia coli O157:H7 str. EC1212] gi|325498379|gb|EGC96238.1| site-specific recombinase, phage integrase family [Escherichia fergusonii ECD227] Length = 387 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 54/376 (14%), Positives = 108/376 (28%), Gaps = 61/376 (16%) Query: 17 RHGK-IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75 R G+ F +G+R + A T + Sbjct: 5 RRGEIWYASFTLPNGKRFKQSL-GTKDKRQATELHDKLKAEAWRVSKLGEIPDITFEEAC 63 Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP----- 130 + + S +S ++ R IT I S ++ + Sbjct: 64 VRWLEEKAHKK----SLDDDKSRIGFWLQHFAGMQLRDITESKIYSAMQKMTNRRHEENW 119 Query: 131 ------------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 ++ L+ ++ L + A +E+ ++ ++ P+ Sbjct: 120 KLRAEACRKKGKPVPEYTPKPASVATKATHLSFIKALLR-AAEREWKMLDKAPIIKVPQP 178 Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IF 222 K + IR + Q+ E + EF L +GLR S+ Q + Sbjct: 179 KNKRIRWLEPHEAQRLIDECPE--PLKSVVEFALATGLRRSNIINLEWQQIDMQRRVAWI 236 Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------------FS 270 + + K+ I V L D ++L + + + Sbjct: 237 NPEESKSNRAIGVALNDTACRVLKKQIGNHHRWVFVYKESCTKPDGTKAPTVRKMRYDAN 296 Query: 271 IWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +KA +AG++ H +R A+ AG L GW++++ Y Sbjct: 297 TAWKAALRRAGIDDFRFHDLRHTWASWLVQAGVPLSVLQEMGGWESIEMVRRYAH----- 351 Query: 330 RLGIKNSRRISSVVDS 345 L + + +DS Sbjct: 352 -LAPNHLTEHARQIDS 366 >gi|329946754|ref|ZP_08294166.1| site-specific recombinase, phage integrase family [Actinomyces sp. oral taxon 170 str. F0386] gi|328526565|gb|EGF53578.1| site-specific recombinase, phage integrase family [Actinomyces sp. oral taxon 170 str. F0386] Length = 264 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 40/227 (17%), Positives = 80/227 (35%), Gaps = 26/227 (11%) Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 +R SSA + +T++R K+ + + + +P +V P+ + + E++++ Sbjct: 20 ARPLASSSASRTVTAVRGWHKFLLAEGTTSQDPSATVRPPQPGRRLPKALSIEEVRRLLE 79 Query: 185 FWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELP 238 S + R E L +G R S++ V L + ++ K V + Sbjct: 80 AASIDDSPVSLRDRALLEVLYATGARISEAVGLVVDDLDADSRLLRLFGKGRKERVVPMG 139 Query: 239 DGFMKLLAMTPIG-----------KETFFINNDKQKMNATQFSIWFKAKATKAGV----- 282 + L + F+N + ++ + A +AG+ Sbjct: 140 TYAWEALDAYLVRGRPALAEKGRGVPQVFLNTLGRPLSRQSAWAVLQQAAERAGLTGAGA 199 Query: 283 ----NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 + S H +R AT GA + G +V + YTK Sbjct: 200 STERHISPHTLRHSFATHLLAGGADVRVVQEMLGHASVTTTQIYTKV 246 >gi|323972425|gb|EGB67632.1| phage integrase [Escherichia coli TA007] Length = 387 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 54/376 (14%), Positives = 108/376 (28%), Gaps = 61/376 (16%) Query: 17 RHGK-IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75 R G+ F +G+R + A T + Sbjct: 5 RRGEIWYASFTLPNGKRFKQSL-GTKDKRQATELHDKLKAEAWRVSKLGEIPDITFEEAC 63 Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP----- 130 + + S +S ++ R IT I S ++ + Sbjct: 64 VRWLEEKAHKK----SLDDDKSRIGFWLQHFAGMQLRDITESKIYSAMQKMTNRRHEENW 119 Query: 131 ------------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 ++ L+ ++ L + A +E+ ++ ++ P+ Sbjct: 120 KLRAEACRKKGKPVPGYTPKPASVATKATHLSFIKALLR-AAEREWKMLDKAPIIKVPQP 178 Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IF 222 K + IR + Q+ E + EF L +GLR S+ Q + Sbjct: 179 KNKRIRWLEPHEAQRLIDECPE--PLKSVVEFALATGLRRSNIINLEWQQIDMQRRVAWI 236 Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------------FS 270 + + K+ I V L D ++L + + + Sbjct: 237 NPEESKSNRAIGVALNDTACRVLKKQIGNHHRWVFVYKESCTKPDGTKAPTVRKMRYDAN 296 Query: 271 IWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +KA +AG++ H +R A+ AG L GW++++ Y Sbjct: 297 TAWKAALRRAGIDDFRFHDLRHTWASWLVQAGVPLSVLQEMGGWESIEMVRRYAH----- 351 Query: 330 RLGIKNSRRISSVVDS 345 L + + +DS Sbjct: 352 -LAPNHLTEHAQQIDS 366 >gi|309700473|emb|CBI99767.1| prophage integrase [Escherichia coli ETEC H10407] Length = 387 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 54/376 (14%), Positives = 108/376 (28%), Gaps = 61/376 (16%) Query: 17 RHGK-IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75 R G+ F +G+R + A T + Sbjct: 5 RRGEIWYASFTLPNGKRFKQSL-GTKDKRQATELHDKLKAEAWRVSKLGEIPDITFEEAC 63 Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP----- 130 + + S +S ++ R IT I S ++ + Sbjct: 64 VRWLEEKAHKK----SLDDDKSRIGFWLQHFAGMQLRDITESKIYSAMQKMTNRRHEENW 119 Query: 131 ------------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 ++ L+ ++ L + A +E+ ++ ++ P+ Sbjct: 120 KLRAEACRKKGKPVPEYTPKPASVATKATHLSFIKALLR-AAEREWKMLDKAPIIKVPQP 178 Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IF 222 K + IR + Q+ E + EF L +GLR S+ Q + Sbjct: 179 KNKRIRWLEPHEAQRLIDECPE--PLKSVVEFALATGLRRSNIINLEWQQIDMQRRVAWI 236 Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------------FS 270 + + K+ I V L D ++L + + + Sbjct: 237 NPEESKSNRAIGVALNDTACRVLKKQIGNHHRWVFVYKESCTKPDGTKAPTVRKMRYDAN 296 Query: 271 IWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +KA +AG++ H +R A+ AG L GW++++ Y Sbjct: 297 TAWKAALRRAGIDDFRFHDLRHTWASWLVQAGVPLSVLQEMGGWESIEMVRRYAH----- 351 Query: 330 RLGIKNSRRISSVVDS 345 L + + +DS Sbjct: 352 -LAPNHLTEHARQIDS 366 >gi|62178894|ref|YP_215311.1| hypothetical protein SC0324 [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62126527|gb|AAX64230.1| Int [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322713346|gb|EFZ04917.1| DNA breaking-rejoining enzyme, catalytic core [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 387 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 51/375 (13%), Positives = 105/375 (28%), Gaps = 60/375 (16%) Query: 17 RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76 R F +G+R + A T + Sbjct: 6 RGETWYASFTLPNGKRFKQSL-GTKDKRQATELHDKLKAEAWRVSKLGETPDMTFEDACV 64 Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP------ 130 + + S +S I+ + IT I S ++ + Sbjct: 65 RWLEEKAHKK----SLDDDKSRIGFWIQHFAGMQLKDITETKIYSAIQKMTNRRHEENWK 120 Query: 131 -----------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167 ++ L+ ++ L + A +E+ ++ ++ P+ K Sbjct: 121 LMDEACRKKGRQPPVFKPKPAAVATKATHLSFIKALLR-AAEREWKMLDKAPIIKIPQPK 179 Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFS 223 + IR + ++ E + EF L +GLR S+ Q + Sbjct: 180 NKRIRWLEPHEAKRLIDECPE--PLKSVVEFALSTGLRRSNIINLEWQQIDMQRKVAWIH 237 Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------------FSI 271 + K+ I V L D ++L + + + Sbjct: 238 PEQSKSNQAIGVALNDTACRVLKKQIGNHHKWVFVYKESSTKPDGTKSPVVRKMRYDANT 297 Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 ++A +AG+ + H +R A+ AG L GW++++ Y Sbjct: 298 AWRAALKRAGIEDFRFHDLRHTWASWLVQAGVPISVLQEMGGWESIEMVRRYAH------ 351 Query: 331 LGIKNSRRISSVVDS 345 L + + +DS Sbjct: 352 LAPNHLTEHARQIDS 366 >gi|327490261|gb|EGF22049.1| phage integrase family integrase/recombinase [Streptococcus sanguinis SK1058] Length = 328 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 33/264 (12%), Positives = 77/264 (29%), Gaps = 14/264 (5%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESRK 127 L+ + + + S ++ + ++ R +TT +R + RK Sbjct: 51 SKLLELFISAKRIEGCSEKSLKYYKIVIENMLTSL-KTSIRDLTTSDLRTYLARYQQERK 109 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + + F W ++Y+ +P + + K ++ E ++ + Sbjct: 110 SSKVTIDNMRRIFSSFFGWLEDEDYILKSPVRRIHKIKTDKTIKETFSDEGLELLRDACD 169 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLA 246 + + + L +G+R + R + + + V L Sbjct: 170 K-IRDLAMIDLLASTGMRVGELVRLNREDINFYERECVVFGKGNSERIVYFDARTKIHLI 228 Query: 247 MTPIGKETFFINNDKQKMNAT------QFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299 ++ + + KA +NK H R+ AT + D Sbjct: 229 NYLDSRQDDNPALFVSLSSPHDRLLIGGVETRLRQLGQKADLNKVHPHKFRRTLATRAID 288 Query: 300 AGATAHELMATYGWKTVDQAETYT 323 G ++ G +D Y Sbjct: 289 KGMPIEQVQHLLGHVKIDTTMHYA 312 >gi|296393307|ref|YP_003658191.1| integrase family protein [Segniliparus rotundus DSM 44985] gi|296180454|gb|ADG97360.1| integrase family protein [Segniliparus rotundus DSM 44985] Length = 370 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 45/342 (13%), Positives = 99/342 (28%), Gaps = 27/342 (7%) Query: 11 VTKERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 V T G+ ++ +RK ++ A+ + + +P Sbjct: 4 VEPYTTSLGEKLWLVRYRKPDRKQTTKRGFTTKRDANAFANEVE-VKKATGSYIAPALGR 62 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK 127 T+ + + L ++ ES + ++ + G + + + + Sbjct: 63 VTVSSVAEGWLTHKEAT-LKPSAWRPVESAWRARVEPEWGAVRISDVEQVDVERWIARLR 121 Query: 128 H---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + +S ++ ++ + AV+ +A NP ++ RK R + D + Sbjct: 122 TQNLSATSVLRAHQTLAGVLDLAVKSRRLASNPARGIDGLPRKVRKPRTYFSTDQLHSLA 181 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-----------TII 233 S+G + + + + + G I+ Sbjct: 182 DESKGHRTLVLLLGTMGPRWGETVGLQVGDCDFLRRRVHIRRNAVQLGGGQIVVGTPKGH 241 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF-------SIWFKAKATKAGVNK-S 285 LL E ++ F S WF +AG+ + + Sbjct: 242 EDRWVPIPPFLLDDLARQCEGKKRDDLVFPARGGGFLKRPYAESGWFDGALRRAGLPRVT 301 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 H +R +A+I+ GA L G + Y D Sbjct: 302 PHDLRHTAASIAVSNGANILALARMLGHDPAMTLKVYADLFD 343 >gi|327404928|ref|YP_004345766.1| integrase family protein [Fluviicola taffensis DSM 16823] gi|327320436|gb|AEA44928.1| integrase family protein [Fluviicola taffensis DSM 16823] Length = 420 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 37/306 (12%), Positives = 97/306 (31%), Gaps = 30/306 (9%) Query: 50 ALTGSTPKREYINSPRKKPTTLKWLISEYR-----KSAHWGSLAVNSRISFESYFDQIIR 104 AL + ++P+ K T+ Y ++ G + + + +++ Sbjct: 92 ALEIKNKLQGKESTPQHK--TILQAFD-YHNLKMAETVKVGKVVPKTLTRYHITRNKVAN 148 Query: 105 KS------GDFDYRKITTKHIRSGVESR----KHTPSSAIQFLTSMRVLFKWAVRQEYVA 154 D ++ + K ++A +++ +++ + AV +++ Sbjct: 149 FIKLQFKAADKPLPEMRLSFVTEFEHYLLTVEKIQSNTAHKYIKNLKKIMNMAVGLDWIP 208 Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCR 211 NP + + ++++ + ++ R F F Y+G +D + Sbjct: 209 SNPFTQFKC-SYTSPDREILNQDELNLIMNKKMHTARLEEVRDVFIFCCYTGFAYADVYQ 267 Query: 212 AGVQHLQNNIFSIKTQKTGTIITVELP-----DGFMKLLAMTPIGKETFFINNDKQKMNA 266 + + T T +++L+ + N + Sbjct: 268 FEKDAVMKGLDGNLWLSTNRQKTGTKESVPLLPIPLEILSKYQDHEYCLKYNKLLPVNSN 327 Query: 267 TQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYT 323 +++ + K A G+ K ++H R AT G + A G + + Y Sbjct: 328 QRYNSYLKEIADLCGIKKKLTSHIARHTFATTVTLANGVPIETVSAMLGHSNIRTTQIYA 387 Query: 324 KGADRI 329 K ++ Sbjct: 388 KVVEQK 393 >gi|257080952|ref|ZP_05575313.1| prophage lambdaba03 [Enterococcus faecalis E1Sol] gi|256988982|gb|EEU76284.1| prophage lambdaba03 [Enterococcus faecalis E1Sol] Length = 301 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 44/276 (15%), Positives = 104/276 (37%), Gaps = 24/276 (8%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY--RKITTKHIRSG---VES 125 + +I E+ + + +++S + +I KHI+S ++ Sbjct: 3 WEDIILEFCMDVTVKGFSKITIKNYKSKLRNTANFFKSINVEPSQIEKKHIKSWIIDMQE 62 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 ++ S+ ++ ++ LF + + ++Y+ NP + +ER K + + I P +++Q + Sbjct: 63 KEMQASTINVSVSRLKKLFDYMLIEKYIEYNPFVDIERLKEQRKVIYPLNDYEIKQMLTV 122 Query: 186 WSEGSQPRLAF------EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239 + +A ++ GLR S+ C + + NN I+ K V + Sbjct: 123 AKKHPYKHIAQRNVVILMLMIECGLRISEVCEIRDEDIMNNQIIIRKSKNNKDRAVAVSP 182 Query: 240 GFMKLLAMTPIGKETFF---------INNDKQKMNATQFSIWFKAKATKAGVN----KSA 286 K + K+ + ++N +K+N + + + S Sbjct: 183 ILKKEIIKYHRIKKRKYGLLEGNTFIVSNLGKKLNEKSIWQIMQEIKKQIDIRDCVRFSG 242 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 H +R A++ G + L G +++ + Y Sbjct: 243 HTLRHTYASMQLRNGLDIYTLSLNMGHSSIEMTQRY 278 >gi|237708556|ref|ZP_04539037.1| transposase [Bacteroides sp. 9_1_42FAA] gi|229457485|gb|EEO63206.1| transposase [Bacteroides sp. 9_1_42FAA] Length = 320 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 40/283 (14%), Positives = 93/283 (32%), Gaps = 27/283 (9%) Query: 72 KWLISEYRKSAHW------GSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHI 119 + L +R+ +A + +E+ D +++ + I Sbjct: 22 RTLFEVFREHNDKCVQLSGTDMAPATVQRYETSLKHTRDFVWETYHKKDVLLDEVSRQFI 81 Query: 120 RSGVESRK----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 K ++A ++L + + + + A+ + ++ +P L + Sbjct: 82 EDYEFWLKTEKKCCHNTATKYLKNFKKITRIALAKGWMKNDPFLEIRF-SLDKVEPDFLE 140 Query: 176 KEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 ++Q+ S + + R F F ++GL SD +H+ + ++ + G Sbjct: 141 DSEIQKLISKEIDIPRLSQVRDIFVFCCFTGLAFSDIHGLRKEHIVEDSNGVRWIRKGRQ 200 Query: 233 ITVELPDGFM-----KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA- 286 T + + + K+L + + + + + K A G+ K+ Sbjct: 201 KTKIMCNIPLIEIPLKILEKYSTNEYCKKHGVLFPVLCNQKMNAYLKELADICGIKKTLT 260 Query: 287 -HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 H R AT + G + + G V Y + DR Sbjct: 261 THVGRHTFATFALANGVSIESVAKMLGHTNVQMTRHYARVLDR 303 >gi|284989441|ref|YP_003407995.1| integrase family protein [Geodermatophilus obscurus DSM 43160] gi|284062686|gb|ADB73624.1| integrase family protein [Geodermatophilus obscurus DSM 43160] Length = 370 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 49/333 (14%), Positives = 104/333 (31%), Gaps = 30/333 (9%) Query: 16 TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75 R K + ++R G++ H + + +++ P + T+ Sbjct: 4 KRGDKWVGFYRDVAGKQHTNGNFHRKRDADLWEQEQKAAIRNDTWVD-PSRSKMTVGQWS 62 Query: 76 SEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH--TPSS 132 + L + S+ S +++ +I + + V + + + S Sbjct: 63 ETWIAGRVH--LKPKTLSSYRSLLATRVLPTWNTVPLTRIRHSDVVAWVAAMRAELSASR 120 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 Q + + AVR +A NP V P+ R T + + Sbjct: 121 TRQAYHLLSSMLDDAVRDNRLARNPATGVGLPRLPKSDRRYLTHQQLADLADGC---GPH 177 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNI---------------FSIKTQKTGTIITVEL 237 RL Y+GLR + + +++ T KT +V + Sbjct: 178 RLMVLVAGYTGLRWGELTGLRARRVESLRGRIDVVEAVTEVDGGMVFGTPKTHQHRSVVV 237 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQF----SIWFKAKATKAGV-NKSAHGVRKF 292 P + L GK + + + WF A G+ + H +R Sbjct: 238 PRFIREDLGRQLAGKAPADLVFASRAGTPLRVQNFRRDWFDRAAHAVGLSGLTPHELRHT 297 Query: 293 SATISADAGATAHELMATYGWKTVDQA-ETYTK 324 +A+++ +GA+ + + G + + Y Sbjct: 298 AASLAIASGASVKGVQSMLGHASAQMTLDRYGH 330 >gi|220905619|ref|YP_002480931.1| integrase family protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869918|gb|ACL50253.1| integrase family protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 398 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 50/374 (13%), Positives = 103/374 (27%), Gaps = 40/374 (10%) Query: 2 TPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGS------- 54 + P + KI Y + G+++ ES + +A Sbjct: 22 RAKSKTPSGEAVPTEKADKIYYIMYRLDGKKVEEKVGRESERMTVAKAAKIREQRINGVT 81 Query: 55 ------TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD 108 +R T+ L Y+ + L ++ E+ F + Sbjct: 82 LPNTERRRQRLEKAQAEAGRWTIGKLWKAYKDNN--PGLKG--IVTDENRFKNYLSGFTK 137 Query: 109 FDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQ--EYVAINPCLSVER 163 ++TT+ + + + + L +R + + V++ L E Sbjct: 138 LSPEELTTQMVDTLRLKLLKSGKKAGTTKNVLELLRRIINFGVKKGLCAWQDPSRLHFEM 197 Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNI 221 PK TKE+ +F + Y+G+R ++ H+ Sbjct: 198 PKLNNVKTEMLTKEERARFIEAAKAAPNRKAGQLMLMAYYTGMRRNELFGLKWAHIDFEH 257 Query: 222 FSIKTQKTGTIITVELPDGF-------MKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274 I D +LLA + + + Sbjct: 258 GFINIVGEKQEGAKSNRDERIPLSPPVRELLAEVGDNGSEYVFPGKDGRSRMIDMNKQVN 317 Query: 275 AKATKAGVNKSA---HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 A AG+ K HG+R A+++ G + K + Y D Sbjct: 318 AIKAAAGLPKDFRPLHGLRHTFASVAVSNGVPLSHVQKLLTHKDPTLTQRYAHLED---- 373 Query: 332 GIKNSRRISSVVDS 345 + + +++V + Sbjct: 374 --EALKNAANMVGN 385 >gi|170697596|ref|ZP_02888685.1| integrase family protein [Burkholderia ambifaria IOP40-10] gi|170137483|gb|EDT05722.1| integrase family protein [Burkholderia ambifaria IOP40-10] Length = 327 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 41/319 (12%), Positives = 99/319 (31%), Gaps = 16/319 (5%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 R R GK R+ + T + ++ + +++ + TL+ + Sbjct: 5 RQRDGKWQVRVRRRGFAD-EAKTFNTRTDAERWARSVETEMDRGSFVSRSEAEANTLEDI 63 Query: 75 ISEYRKSAHWGSLA-VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPS 131 I+ Y + ++ I + + +T K + + + R + P+ Sbjct: 64 INLYITDVCPTQRSGPDAIIRLRATCR---KTLAKLSMAALTPKAVAAYRDERLKQVKPA 120 Query: 132 SAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 + I+ L + + A R+ + NP + +P R + E+ + + Sbjct: 121 TVIRELAFLSAIINHARREWDINIPNPIALIRKPTAPQGRDRVLSIEEEARLLAELVPVG 180 Query: 191 QPRLAFEF----LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246 + + L +G+R + + + T +P + Sbjct: 181 RINVWLLPATILSLETGMRRGELVALRWSDVNLEAQTAHLSMTKNGTARTVPLSKKAV-- 238 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAH 305 + I+ + + +AG+ + H +R + T A Sbjct: 239 -ATLAALPRSIDGRVIPVKGLTLHAALRKACARAGIVDFHWHDLRHTAITRMAQKLPNVI 297 Query: 306 ELMATYGWKTVDQAETYTK 324 EL A G +++ + Y Sbjct: 298 ELAAVSGHRSLAMLKRYYH 316 >gi|118463502|ref|YP_881424.1| integrase fusion protein [Mycobacterium avium 104] gi|118164789|gb|ABK65686.1| traSA:integrase fusion protein [Mycobacterium avium 104] Length = 382 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 53/350 (15%), Positives = 105/350 (30%), Gaps = 35/350 (10%) Query: 17 RHGKI-IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75 RHG+ + + + P+ T + Sbjct: 22 RHGRGMRWRATYVDDQSREHSRSFGRKVDAQRWLDEVTAAVVTGQYVDPKAGQITFRDYA 81 Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134 +RK +SR E+ + GD I +++ V+ + P++ Sbjct: 82 ERWRKMQVQR---PSSRAHIETMLRRHAYPTLGDRQLTSILPSDVQAWVKGLQLAPATVG 138 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194 + + K A+R +A NPC + PK + I P T E ++ ++ Q + Sbjct: 139 VVHGLVSTVMKSAIRDRRLAANPCDGTKLPKVQRPQIVPLTTEQVEAVRAELPAELQALV 198 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIF-------------SIKTQKTGTIITVELPDGF 241 +GLR + V ++ T Sbjct: 199 TLA--AGTGLRQGECFGLTVDRVRFLERVLTVDRQLVTVAGQAPTFGPPKTRASNRAIPL 256 Query: 242 MKLLAMTPIGKETFF--------INNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRK 291 K++A F + + + F ++A +A + H +R Sbjct: 257 PKVVADALAAHLAAFPAEPDGLVFTQQGKPITRSTFGYRWRAAVKEAKLPHGTGFHALRH 316 Query: 292 FSATISADAGATAHELMATYGWKT-VDQAETYTK----GADRIRLGIKNS 336 + A++ G + + A G + V+ +TY+ DR R I + Sbjct: 317 YYASLLIRHGESVKTVQARLGHASAVETLDTYSHLWPDSDDRTRDAIDSV 366 >gi|329960376|ref|ZP_08298801.1| site-specific recombinase, phage integrase family [Bacteroides fluxus YIT 12057] gi|328532814|gb|EGF59596.1| site-specific recombinase, phage integrase family [Bacteroides fluxus YIT 12057] Length = 407 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 46/343 (13%), Positives = 87/343 (25%), Gaps = 32/343 (9%) Query: 23 YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY-INSPRKKPTTLKWLISEYRKS 81 Y K R + + + + Y S Sbjct: 74 YLIDKPRTPAERQQNKETLELAMRIRAEREQEFKESMLGYRLKKDRAVNFLDYFQAYINS 133 Query: 82 AHWGSLAVNSRISFES---YFDQIIRKSGD--------FDYRKITTKHIRSGVESRKHT- 129 ++ + + IT + + V + Sbjct: 134 Y--------TKKDIRMVQIALSRFKDFLKEQYPMNEFSIKPELITKEMMEKFVAYLQSRS 185 Query: 130 -PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187 A + + ++A+ + + +PC SV + + Q Sbjct: 186 VGEGAKSIYQRFKKVIRYAIDHDVMLKDPCKSVTCKVDSQMLRKDVLSPEEIQKLIACHY 245 Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL- 244 E R AF F LY GLR D +++ +K +++ T + L Sbjct: 246 DNENPTIRRAFIFCLYCGLRFCDVKDLTYKNVDYANRLLKFEQSKTKGHSASSGVVIPLN 305 Query: 245 --LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 L K +AG++K S H R A + Sbjct: 306 DGLLSIIGEAPADKNCLIFDLPTYESCCKSVKRWVKRAGIDKHISWHCARHSFAVNILNN 365 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343 GA + + G + E YT+ D +L + + + Sbjct: 366 GANIKTVASLLGHSGLKHTEKYTRAVD--KLKEEAINSLPELK 406 >gi|299137517|ref|ZP_07030698.1| integrase family protein [Acidobacterium sp. MP5ACTX8] gi|298600158|gb|EFI56315.1| integrase family protein [Acidobacterium sp. MP5ACTX8] Length = 346 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 51/354 (14%), Positives = 101/354 (28%), Gaps = 20/354 (5%) Query: 1 MTPS--LRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKR 58 M +R V ++ + GR R +S + Y + Sbjct: 1 MPRKKVIRKERGVFEKVPGSEIWWIRY-YVDGREHREKVGRQSDAVDLYRIRRADALRGA 59 Query: 59 EYINSPRKKPTTLKW----LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI 114 + + + K + + Y + +F + I++ G +I Sbjct: 60 KMPANMKNKGVKFEEIGKHALEWYIEHGR------KDVKNFRIRMNIILKDFGHRVAEEI 113 Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 I + ++ +P++ + FK A V+ NP VE+ K +R Sbjct: 114 KPSEIDAWLKKYDWSPATKNCYKNVFGKTFKIAFADGKVSGNPARLVEQRPEKNARLRFL 173 Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFL-LYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGT 231 + E+ + + + + L +G+R S+ + I K G+ Sbjct: 174 SAEEEAKIREAIDLRCPRHMPELDIALNTGMRKSEQYSLEWGQVSFRRKRILLDETKNGS 233 Query: 232 IITVELPDGFMKLLAM-TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGV 289 + + +K I K + WF A V N + H + Sbjct: 234 SREIPMNKTCVKAFEELHADRPHEGRIFQSKYGRDLNDSRAWFDRVVEDAKVSNFTWHAL 293 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343 R + AG G KT+ Y A ++ + Sbjct: 294 RHTFISRLVMAGVDLRTAQELAGHKTISMTVRYAHLAPEHNQA--AIEKLDPKI 345 >gi|294012827|ref|YP_003546287.1| integrase/recombinase XerC [Sphingobium japonicum UT26S] gi|292676157|dbj|BAI97675.1| integrase/recombinase XerC [Sphingobium japonicum UT26S] Length = 298 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 36/276 (13%), Positives = 84/276 (30%), Gaps = 24/276 (8%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD--------YRKITTKHIRSG 122 L ++R+ +V++ ++ + ++++ + I +R+ Sbjct: 5 DDLCEQWRRHLALDRRRSVHTVRAYVATAERLLAFLEEHRGEAATAAMLAGIEQADLRAF 64 Query: 123 VESRKHTP---SSAIQFLTSMRVLFKW---AVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + R+ SA + L+++R ++ + + P + P+ + Sbjct: 65 LTVRRMDGIGNVSAARELSAVRGFLRFVGGEDARVPMLKGPRVKRGLPRPVSPDEAVALA 124 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 D+ + G++ L +GLR ++ L T K G V Sbjct: 125 GDIAETAREEWIGARDWAVLLLLYGAGLRIGEAMALTGAVLPLGETLRVTGKRGKTRIVP 184 Query: 237 LPDGFMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAH 287 L K + + ++ + + G+ + H Sbjct: 185 LLPQVRKAMEAYVALCPFGQEKDAPLFRGARGGPLSPALIRRAVQGARGRLGLSDRTTPH 244 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 +R AT GA L G ++ + YT Sbjct: 245 ALRHSFATHLLGRGADLRSLQELLGHASLSSTQIYT 280 >gi|261855921|ref|YP_003263204.1| integrase family protein [Halothiobacillus neapolitanus c2] gi|261836390|gb|ACX96157.1| integrase family protein [Halothiobacillus neapolitanus c2] Length = 329 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 39/282 (13%), Positives = 89/282 (31%), Gaps = 25/282 (8%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGVESRKHT 129 + + +LA ++ ++ + Q+ D D +I + +R + + + Sbjct: 18 ECARAWLTESA--TLAPKTQAAYLGDWQQLQSHLHDQDVIKPDQIDDRRLRGYLAHCRES 75 Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 S + ++ R L ++ + +++ PK + E M Q Sbjct: 76 GLDNRSIARKSSATRWLLRYWQKIHIACPASPDALKSPKAAKKLPDAPAIETMNQLLDQP 135 Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----------TI 232 + R FE + SGLR ++ R V + + + Sbjct: 136 MVEDELLIRDRCMFELIYSSGLRVAELVRLDVHDIDRSEGIARVTGKREKTRLVPVGGKA 195 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSAHGVR 290 + ++ + + F+N Q++ + A + G H +R Sbjct: 196 LDRVALWLPIRKTLLKDTTEPALFLNRRGQRLTIRSVQMRLNRLAQQTHLGQTLHPHQLR 255 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 AT ++ + G +++ + YT D RL Sbjct: 256 HAFATHVLESSGDLRAVQEMLGHESLSTTQIYTH-LDFQRLA 296 >gi|117923766|ref|YP_864383.1| tyrosine recombinase XerC subunit [Magnetococcus sp. MC-1] gi|117607522|gb|ABK42977.1| tyrosine recombinase XerC subunit [Magnetococcus sp. MC-1] Length = 335 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 39/311 (12%), Positives = 89/311 (28%), Gaps = 51/311 (16%) Query: 74 LISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRSG-- 122 + + L+V++ + + ++ ++ HI + Sbjct: 5 YLQRFFDHLMQERRLSVHTEKGYRRDLEAFSAFYAEYEGEPLTPTKLAQLDGDHILAFLG 64 Query: 123 -VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 ++ + + ++R F + R+ V+ NP +V PK R + E Sbjct: 65 RGHREGLARTTMQRRMAALRAWFNYMQREGLVSGNPAAAVSSPKAPKRLPRAPSVEQTLN 124 Query: 182 FK-------------------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-- 220 + E L +GLR S++C + Sbjct: 125 LLDKSTPRPLSPEASDFDTSAWAVLRSLRDTALLELLYSAGLRISEACNLDRADVDLRGG 184 Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ----------KMNATQFS 270 ++ K G V L + + + D ++N+ + Sbjct: 185 ELRVRHGKGGKQRMVPLGRTAVAAIEAWLQARTRAKPQLDPMGPIFTGQLGKRLNSREGQ 244 Query: 271 IWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 + + + + H +R AT AGA + G ++ + YT Sbjct: 245 RLLEKWRARLDLPESVTPHALRHAFATHLLQAGADLRAIQEMMGHASLSATQKYTH---- 300 Query: 329 IRLGIKNSRRI 339 L ++ ++ Sbjct: 301 --LDMQALAKV 309 >gi|254885282|ref|ZP_05257992.1| phage integrase [Bacteroides sp. 4_3_47FAA] gi|254838075|gb|EET18384.1| phage integrase [Bacteroides sp. 4_3_47FAA] Length = 343 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 43/288 (14%), Positives = 91/288 (31%), Gaps = 39/288 (13%) Query: 85 GSLAVNSRISFESYFDQIIRK--------SGDFDYRKITTKHIRSGVES-----RKHTPS 131 +++ N+++S+ F ++ + I+ + + ++ R + S Sbjct: 28 RNMSHNTQMSYRDTFRMLVTFVSGKTNIAIDKLNISDISKEMVLLFLDEFVEKMRNASVS 87 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-------- 183 S Q LT+++ K+ + I+ C + + K R T D ++ + Sbjct: 88 SRNQRLTAIKSFAKFIAWKCPDYIDWCHQIRQIPSKKITQRQITYMDREEMEALTEAPLS 147 Query: 184 -SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-----TQKTGTIITVEL 237 G + + + +G R S+ V + K T L Sbjct: 148 NRNHKYGKRDHIIILLMYNTGARVSEVISIHVGDIVMPKKRGMGTVTLHGKGRHERTCPL 207 Query: 238 PDGFMKLLAMTPIGKETFFI---NNDKQKMNATQFSIWFKAKATKAGVNK--------SA 286 F LL G++ N + M K A + S Sbjct: 208 WPEFWDLLKPLIEGRKPDEFLFLNRFNKPMTRYCIYTLIKKYADYISRDYPNLRNKRPSP 267 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGI 333 H +R +AT ++G + + G ++D Y + D+ + Sbjct: 268 HTIRHTTATHLLNSGTDINTVRNWLGHASIDTTNIYAEISIDQKIKAL 315 >gi|297589909|ref|ZP_06948549.1| integrase [Staphylococcus aureus subsp. aureus MN8] gi|297577037|gb|EFH95751.1| integrase [Staphylococcus aureus subsp. aureus MN8] gi|315193060|gb|EFU23461.1| hypothetical protein CGSSa00_09058 [Staphylococcus aureus subsp. aureus CGS00] Length = 402 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 51/387 (13%), Positives = 106/387 (27%), Gaps = 56/387 (14%) Query: 14 ERTRHGKIIYYFRKGH----GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 R Y G G+ + A A R + + Sbjct: 16 YEKRGNTWRYRISLGKDAETGKYKYISNSGFKRKSDAKHHAEMVERQLRN-GDYIAPSTS 74 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--K 127 T K + ++ S + + V+S + E + I + + + I + V + Sbjct: 75 TFKQVADDWI-SQYANEVKVSSVRAREKAINHAIERFNNKPIQTINKHEYQRFVNDISAQ 133 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---- 183 ++ + + S ++FK+A + + I P ++RPK+K E ++F Sbjct: 134 YSKNYVDSIIASTNMIFKYAYDMKLIRIMPSEGIKRPKKKISVEELEDTEIHKKFLEKDE 193 Query: 184 --------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI----------- 224 F L Y+G+R + + +I Sbjct: 194 LFQFLEVAKNHHSPQNSFEVFCTLAYTGMRAGELLALKWSDIDFENNTINITKTYYNPNN 253 Query: 225 --------------------KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264 ++ D + F + + + Sbjct: 254 NKKQFQILTPKTESSIGKISVDPHVIKLLKNYKTDVQDTWKNELYVDNNFVFTDVNGYPL 313 Query: 265 NATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE- 320 + +W KA K + S H R + +AG E+ K ++ Sbjct: 314 VIKKLQLWIKAILKKTDITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMN 373 Query: 321 TYTKGADR-IRLGIKNSRRISSVVDSD 346 Y K + + + ++ V D Sbjct: 374 IYAKITNSYKKDASQKFSKLMENVSKD 400 >gi|293402584|ref|ZP_06646711.1| integrase/recombinase, phage integrase family [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291303976|gb|EFE45238.1| integrase/recombinase, phage integrase family [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 327 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 31/262 (11%), Positives = 78/262 (29%), Gaps = 14/262 (5%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESRKHT 129 I + + + S + S ++ + + + ++ITT IR ++ + Sbjct: 52 FIDLFLAAKRIEGCSEKSLKYYNSTIHAMLERL-NKNVKEITTDDIRSYLTEYQSNKNSS 110 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + + F W ++Y+ +P + + K + ++ E ++ + +E Sbjct: 111 RVTIDNIRRILSSFFSWLEDEDYILKSPVRRIHKVKTVSNIKETYSDETLELIRDNCNE- 169 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT 248 + + L +G+R + + V L Sbjct: 170 IRDLALIDLLASTGMRIGELVLLNRNDINFYERECVVFGKGDKERVVYFDARAKIHLKNY 229 Query: 249 PIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAG 301 + ++ + + G+ H R+ AT++ D G Sbjct: 230 LDSRTDDNNALFVTLKAPFNRITIGGIETRLRTLGKQLGLSKVHPHKFRRTLATMAIDKG 289 Query: 302 ATAHELMATYGWKTVDQAETYT 323 +L G + +D Y Sbjct: 290 MPIEQLQQLLGHRRIDTTLQYA 311 >gi|312621789|ref|YP_004023402.1| integrase family protein [Caldicellulosiruptor kronotskyensis 2002] gi|312202256|gb|ADQ45583.1| integrase family protein [Caldicellulosiruptor kronotskyensis 2002] Length = 286 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 38/270 (14%), Positives = 91/270 (33%), Gaps = 23/270 (8%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRSGVESR 126 +Y K+ + N+ S+ + +R D + + +S + + Sbjct: 5 FEDYLKTQDFT---ENTIKSYTKDVELFMRWYVDTTGQEFLPENLTEFDLVEYKSYLLRK 61 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG--IRPWTKEDMQQFKS 184 H PS+ + + S+R + + + + + +++ K T K+D+ +F+ Sbjct: 62 NHKPSTVNRSIISLRKFVHFLLDRGLLNKDISTRLKQVKDTTRNLSPVVLDKKDIYKFRR 121 Query: 185 --FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242 ++ E LL +G+R S++ ++ ++ + K + G + Sbjct: 122 TVHQFGKTRDVAFVELLLNTGMRISEAINLKLEDVEISERKGKVKIWGKGRSYREVPLNS 181 Query: 243 KLLAMTPIGKETFFINNDKQ--------KMNATQFSIWFKAKATKAGVNKSAHGVRKFSA 294 + + K+ + A AG+ H +R F A Sbjct: 182 DARKYLSEYLKKRPYSETNYLFVTSTGKKLTRNSAYKIIQKYAKLAGLCLHPHMLRHFFA 241 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324 D G +++ G + ++ Y K Sbjct: 242 QTLIDKGLNIYDVQQLLGHQRIETTLRYKK 271 >gi|310827797|ref|YP_003960154.1| phage integrase [Eubacterium limosum KIST612] gi|308739531|gb|ADO37191.1| phage integrase [Eubacterium limosum KIST612] Length = 320 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 43/288 (14%), Positives = 85/288 (29%), Gaps = 40/288 (13%) Query: 85 GSLAVNSRISFESYFDQIIRK-------------SGDFDYRKITTKHIRSGV-------- 123 + N+ IS+ + Q R + K I+ Sbjct: 20 RGFSPNTLISYRNDLMQFFRFLKVRFQLADPDAEFDTISIDDVDLKVIKQVTLPDIYAFL 79 Query: 124 ----ESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 R + S+ + +++ L+ + + +P +E PK K+ T ++ Sbjct: 80 SYATSKRSNIDSTRKRKTAAIKNLYHYLTTVIDTKMDDPTQRLEIPKVKSRDPVYLTLDE 139 Query: 179 MQQFKSFWS--EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 + + L G+R S+ ++ +Q I + + Sbjct: 140 ALSLLNAVDGEFYERDLAIITLFLNCGIRLSELTNLKIEDIQEETIHIVGKGN-KERNIR 198 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQ------KMNATQFSIWFKAKATKAGV---NKSAH 287 L D ++ L + ++ K KAG+ S H Sbjct: 199 LNDACVETLEAYMAVRPEDTDVPYVFLSKRKTPLSNRTVQSMVKKYVLKAGLNADKISVH 258 Query: 288 GVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTK-GADRIRLGI 333 +R +AT+ G L G +++ E YT D +R I Sbjct: 259 KLRHTAATLMHKYGQVDIRTLQKVLGHESISTTEIYTHIEVDDVREAI 306 >gi|296161353|ref|ZP_06844160.1| integrase family protein [Burkholderia sp. Ch1-1] gi|295888339|gb|EFG68150.1| integrase family protein [Burkholderia sp. Ch1-1] Length = 354 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 39/330 (11%), Positives = 94/330 (28%), Gaps = 25/330 (7%) Query: 13 KERTRHGKIIYYFRKGHGRRIRLP-YPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 ++ + G R G+RIR + Y L +++ + T Sbjct: 4 RKDKKSGIWHLDIRTPGGQRIRRSTETSDRKAAQEYHDRLKADLWRQDKL--GETPDRTF 61 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR--------SGV 123 + + + + + K R +T I G Sbjct: 62 EEAAVRFLHECEGQ----RDYSTKLRHVEYWRAKFAGRPVRSLTADDIIDALPAQNLRGK 117 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + T S+ +++++++ + E++ P L + + W ++ Sbjct: 118 ARQPLTGSTRNRYISTIKRMLNLCAEWEWIDRVPKLPR---YHEPDVRVRWEPPEVITAL 174 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGF 241 + R A + +G+R + + + I + + +P Sbjct: 175 IQALQLPWMRDAAIVAVATGMREGELFGLTRSQVDLAQHNAWITHESAKSKRARSVPLND 234 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIW----FKAKATKAGV-NKSAHGVRKFSATI 296 + K + + + + F+ G+ + H +R A+ Sbjct: 235 DAISVFARRMKTAKSLMFTRGEGLEKRIQQIDTRDFERACEIVGIEDFHWHDLRHTWASW 294 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326 G L GW+T++ + Y A Sbjct: 295 HVQRGTPLMVLKELGGWETIEMVQKYAHLA 324 >gi|317055405|ref|YP_004103872.1| integrase family protein [Ruminococcus albus 7] gi|315447674|gb|ADU21238.1| integrase family protein [Ruminococcus albus 7] Length = 396 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 51/320 (15%), Positives = 98/320 (30%), Gaps = 51/320 (15%) Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRS 121 + K + ++ + +L + +E +I G KIT + I++ Sbjct: 63 QSKAIKFEVFAEQWFEEYAKPNLRNTT---YERMLQLRGRIYPALGHMRMDKITPRQIQA 119 Query: 122 GVESRKH-----------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170 V S P + L+ + +F +AV+ V NPC V PK Sbjct: 120 FVNSLSREGANERTGKPLAPKTIRHNLSFVSDVFSYAVKMGVVNDNPCSKVTLPKNNQAE 179 Query: 171 IRPWTKEDMQQFKSF-WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF------- 222 + +T E +Q+F + E + R F +++SG R + + + Sbjct: 180 KKIYTPEQVQRFLTLLNDEPLKYRTFFNLMIFSGFRRGEMLGLEWKDVDFEHNIISIRRT 239 Query: 223 ----------SIKTQKTGTIITVELPDGFMKLLAMTPIGKETF--------------FIN 258 + T+ + T++ P M +L ++ + Sbjct: 240 SNYTGRKGTYTDTTKTKKSQRTLKFPQEIMDMLREYKDEQDMQALKCGDKWVETDRLYTK 299 Query: 259 NDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD 317 + M W K + H R A++ + G + G TV Sbjct: 300 WNGLPMQNGTPYFWLGEFCEKHDLPFYGLHSFRHLFASLLVNQGVDIVTVSGALGHSTVS 359 Query: 318 QA-ETYTKGADRIRLGIKNS 336 Y D R + + Sbjct: 360 TTSNIYCHMLDEARAKVSEA 379 >gi|124514510|gb|EAY56023.1| putative phage integrase [Leptospirillum rubarum] Length = 346 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 43/334 (12%), Positives = 101/334 (30%), Gaps = 31/334 (9%) Query: 17 RHGKIIYYFR-KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75 + G + + + + G ++ + A+ ++ + +++ + TTL + Sbjct: 6 KRGDLQWRVKIRRRGFPLQTRTFNTKAEAEAWARSIETEMDRGSFVDRSEAENTTLSEAL 65 Query: 76 SEYRKSAHWGSLAVNSRISFE--SYFDQIIRK-SGDFDYRKITTKHIRSGVESR--KHTP 130 Y ++ + + S++ + + G +I I + R Sbjct: 66 DRY-----AREISPHKKGSYQELCRIENLKTHSLGKRFIAQIRGSDIALYRDERLKMVAA 120 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG---IRPWTKEDMQQFKSFWS 187 ++ L + LF+ A ++ + K R E+ + + Sbjct: 121 ATVRLELAIISHLFEIARKEWGMESLNNPVRIVNLPKKSESRDRRLLLGEEEKILEFCEI 180 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--IKTQKTGTIITVELPDGFMKLL 245 G L +G+R + +H+ + I K G TV L +++L Sbjct: 181 YGGDLPHIVRLALETGMRRGEIVGMTWEHVNLKKNTVLIPKTKNGEKRTVPLSKKAVEIL 240 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKA---------TKAG------VNKSAHGVR 290 ++ T F + +N + H +R Sbjct: 241 KGLSRRIGGRVWEITEEHSVTTAFRRAISRARSTYEKECQEKRIKPDPSFLLNLTFHDLR 300 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + + + G ++ A G KT+ YT Sbjct: 301 HEATSRFFEKGLNPMQVAAITGHKTLQMLRRYTH 334 >gi|229193382|ref|ZP_04320331.1| Site-specific recombinase, phage integrase [Bacillus cereus ATCC 10876] gi|228590096|gb|EEK47966.1| Site-specific recombinase, phage integrase [Bacillus cereus ATCC 10876] Length = 327 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 40/304 (13%), Positives = 95/304 (31%), Gaps = 22/304 (7%) Query: 48 MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107 + PK E + + ++ I + A + + + ++ ++ Sbjct: 8 KRIVKRRLPKVELLKVDKTDSLEVEQTIKIFSHIAKQEGMRERTISDYAKFYRYFTKEVE 67 Query: 108 DFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164 D RK+ HI ++S +P + L+ ++ LF+ + EY+ NP ++ + Sbjct: 68 VTDLRKMNADHIGLYIDSLLEKGLSPVTVNIRLSGLKSLFRRLEKHEYIKENPAVNFSKL 127 Query: 165 KRKTEGIRPWTKEDMQQFKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220 + I + +++ G + +A +L+ G+R ++ + + + Sbjct: 128 RTDESKIYTFNNSQIKRLFRVVDTTSYAGFRDYVAMLLMLHCGMRVNEVAALEINDIDFD 187 Query: 221 IFSI----KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-------F 269 I K ++ + M + +F + Sbjct: 188 NGVILLAGAKNKNRRSRSIPMSKRIMGEIKQLITESMDYFEEVKHVFLTQDGRRLDNDII 247 Query: 270 SIWFKAKATKAGV----NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 +G+ S H +R A G + + LM G K + Y + Sbjct: 248 RKRMYTYGRLSGLYRECRVSPHSLRHTFACNYLRDGGSVNALMHILGHKDIASTMRYVRM 307 Query: 326 ADRI 329 Sbjct: 308 TSEE 311 >gi|171056822|ref|YP_001789171.1| integrase family protein [Leptothrix cholodnii SP-6] gi|170774267|gb|ACB32406.1| integrase family protein [Leptothrix cholodnii SP-6] Length = 312 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 39/293 (13%), Positives = 84/293 (28%), Gaps = 36/293 (12%) Query: 77 EYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKH---TP 130 + + LA + + + ++ + + ++ H+R P Sbjct: 14 AFLQHLQVQRRLAPRTLTMYGAALLRLEHAAAEQQLALTQVRPPHVRRWAAMLHGQGLGP 73 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE------DMQQFKS 184 S L + R L++W R+ V+ NP + PK + + D + Sbjct: 74 RSIAIHLAAWRGLYRWLGREGQVSANPVDGLRPPKAGRPLPKALAVDEAVVLADHHDPAT 133 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--------IKTQKTGTIITVE 236 + E L GLR ++ + K V Sbjct: 134 DPLLDLRDHAMTELLYGCGLRAAELIGLDCIAGPDAAGWIDLEGGDAQVLGKGSNRRIVP 193 Query: 237 LPDGFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 + + + + F++ ++ +Q +A AG+ + Sbjct: 194 VGPPAVAAVQAWLAVRHQMARAGELALFVSRRGTRLTDSQLRRRLAQRAQSAGLTSHVHP 253 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 H +R A+ + + G + + YT RL ++ RI Sbjct: 254 HMLRHSYASHLLQSSGDLRAVQELLGHAQISTTQVYT------RLDYQHLARI 300 >gi|317405722|gb|EFV86018.1| phage integrase family Site-specific recombinase [Achromobacter xylosoxidans C54] Length = 375 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 56/358 (15%), Positives = 112/358 (31%), Gaps = 31/358 (8%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 +T G RK + + YI + T++ Sbjct: 6 KTSSGTWKALIRKTGWPA-TAKTFRTKRDAEDWARRTEDEMVRGVYIQRAPAERMTVEAA 64 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-------- 126 ++ Y K A +++ IIR G + + + + + R Sbjct: 65 LTRYLKEVTPTKRA-STQAGEHKKAQVIIRHLGKYSLAALNAEIVAQFRDMRLAGDPDKN 123 Query: 127 -KHTPSSAIQF---LTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQ 180 K P S L + LF A+++ + NP ++ RP + R T E+ Sbjct: 124 GKLRPRSNNTVRLELALLGHLFTVAIKEWGIGLPFNPVSNIRRPAPGSGRNRRLTPEEQN 183 Query: 181 QFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVE 236 + + S P + + +G+R S+ ++ + ++ K + TV Sbjct: 184 RLLQAVDKHSNPMFGWIVRIAVQTGMRLSEIATLRIRQVDIERRVVRLEHTKNSSPRTVP 243 Query: 237 LPDGFMKL--------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAH 287 L ++ L F F + AG+ + H Sbjct: 244 LTTEATRVFTEALANPLRPAETELVFFGEPGRDGIRRPYLFDKAWTDAKRAAGLEDFRFH 303 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345 +R + + +AG + E+ A G K++ + YT R ++ R++ S Sbjct: 304 DLRHEAVSRFVEAGLSDQEVSAISGHKSMQMLKRYTHL--RAEDLVQKLDRLARRAPS 359 >gi|313895830|ref|ZP_07829384.1| site-specific recombinase, phage integrase family [Selenomonas sp. oral taxon 137 str. F0430] gi|312975255|gb|EFR40716.1| site-specific recombinase, phage integrase family [Selenomonas sp. oral taxon 137 str. F0430] Length = 363 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 54/330 (16%), Positives = 97/330 (29%), Gaps = 28/330 (8%) Query: 17 RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76 + G + + F + L R+ SP TL+ L Sbjct: 8 KRGTWFAKIKYTDW-AGNKKETTKRGFAKKKDAQLFEQEFLRQKTESP---SMTLESLYH 63 Query: 77 EYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSS 132 Y + + + + ES F ++I+ G + KIT K IR +++P+ Sbjct: 64 LYMEDLRHR-IRPTTYSTKESIFSNRILPHLGQYPCDKITPKIIRQWQNLLVADEYSPTY 122 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 + LF +AV+ + +NP SV+ + + + D Sbjct: 123 LKMINGQLVSLFNFAVKYYGLYVNPMKSVDTIGKSSAEAMQFWTVDEFNRFILTQSSPLH 182 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------------ITVE 236 + F L ++G+R + ++ QK+ V Sbjct: 183 KTIFMLLFWTGMRVGELLALTYADFDLEKKIVRVQKSYIRLKGKDLIGPPKTPGSNRVVS 242 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSAT 295 LP + L + N + A KAGV H +R A+ Sbjct: 243 LPSFLVDNLMSFFESLKPLDPNARLFIVTRASIR-RLHTGAKKAGVKLIRIHDLRHSHAS 301 Query: 296 ISADAGATAHELMATYGWKTVDQAET-YTK 324 G E+ G ++ Y Sbjct: 302 YLIHIGVPIMEVSKRLGHDKIETTLRTYAH 331 >gi|285019408|ref|YP_003377119.1| shufflon-specific DNA recombinase [Xanthomonas albilineans GPE PC73] gi|283474626|emb|CBA17125.1| putative shufflon-specific dna recombinase protein [Xanthomonas albilineans] Length = 364 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 58/341 (17%), Positives = 107/341 (31%), Gaps = 33/341 (9%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 +T G RK + + YI + T++ Sbjct: 6 KTPSGTWKALIRKTGWPA-TAKTFRTKRDAEDWARRTEDEMVRGIYIQRAPSERMTIEDA 64 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-------- 126 + Y S S + +++ G + +T + I + R Sbjct: 65 LKRYLSEVSPTK-RQASADSDARHAKPLMQNLGRYSLAALTPELIAKYRDDRLAGLDRKD 123 Query: 127 --------KHTPSSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTK 176 +P++ L + LF A+++ + NP S+ RP R T+ Sbjct: 124 AKGKPAPKPRSPNTVRLDLALLGHLFNVAIKEWGIGLTYNPVQSIRRPAPSPGRDRRLTR 183 Query: 177 EDMQQFKSFWSEGSQPRLAFEFL--LYSGLRCSDSCRAGVQHLQNNIFSIK------TQK 228 E+ + S P L + L +G+R S+ + + + T Sbjct: 184 EEEIRLMVAVDAHSNPMLGWIVRIALETGMRSSEITGLRRSQVDLDRRVARLQETKNTMS 243 Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINN----DKQKMNATQFSIWFKAKATKAGVN- 283 +TVE F + L +T I K A QF+ + AG+ Sbjct: 244 RTVPLTVEATRLFREALNNPVRPIDTDLIFFGEPGRDNKRRAYQFNPIWMRIKKDAGLPD 303 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R + + +AG + E+ A G K++ + YT Sbjct: 304 FRFHDLRHEAVSRFVEAGLSDQEVAAISGHKSMQMLKRYTH 344 >gi|238917697|ref|YP_002931214.1| hypothetical protein EUBELI_01777 [Eubacterium eligens ATCC 27750] gi|238873057|gb|ACR72767.1| Hypothetical protein EUBELI_01777 [Eubacterium eligens ATCC 27750] Length = 364 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 44/332 (13%), Positives = 100/332 (30%), Gaps = 35/332 (10%) Query: 21 IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK 80 + Y++ G R + AL + + + K + Y Sbjct: 14 VRTYYKDLTGARKQK----TKRGFAKKSEALEWERNFKLKEDQSIS--MSFKSFVDIYLT 67 Query: 81 SAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK---------HTP 130 + N+ ++ + + +I+ G I T ++ +P Sbjct: 68 DLEPK-IKRNTFLTKKHIIETKILPYFGKRKLDDIRTSNVIQWQNEIMKLKKDNGELFSP 126 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-IRPWTKEDMQQFKSFWSEG 189 + + + AV + N ++ + WT+E+ Q F + Sbjct: 127 TYLKTIHNQLSAILNHAVNMYGLKDNVARKAGTMGKEENKEMEFWTQEEFQAFLECVVDK 186 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------------I 233 AFE L ++G+R + + +++ K+ Sbjct: 187 PISYYAFEILYWTGIREGELLALTLGDFNFEKKTLRINKSYQRLEGKDVITDQKTPKSNR 246 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKF 292 T+ +PD + +++ ++ + A AGV + HG+R Sbjct: 247 TIAMPDFLTIEMEDFIKNIYGIKMDDRIFTISKSYLHHEMDRGAKLAGVKRIRIHGLRHS 306 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324 ++ + G +A + G ++VD Y Sbjct: 307 HISLLINLGFSALTIGERVGHESVDITYHYAH 338 >gi|184200720|ref|YP_001854927.1| tyrosine recombinase XerC [Kocuria rhizophila DC2201] gi|183580950|dbj|BAG29421.1| tyrosine recombinase XerC [Kocuria rhizophila DC2201] Length = 378 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 45/345 (13%), Positives = 92/345 (26%), Gaps = 34/345 (9%) Query: 27 KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHW-G 85 P + + E S L + E+R Sbjct: 31 HPTEPAPSAERPAGPARTAQHAAQHRPPARTSEDTGSSTPPVGPLAPYLPEFRAHLSLER 90 Query: 86 SLAVNSRISFESY---FDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTS 139 S + N+ S+ S + + + G + +R + R SS + + + Sbjct: 91 SRSENTVRSYTSDVADLSRWMLEHGIDGADLLDRDALRGWLAQRHQRGLARSSVSRGIAA 150 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-------------- 185 + F+WAV + + +P + P+ + + Sbjct: 151 VHTFFRWAVDTQGLRHDPAAGLRGPRPARHLPDVVGATALAEMLDALGDVALGPHEEESD 210 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKL 244 + ++ E L +G R S+ H+ + V + Sbjct: 211 AALAARDWALLELLYATGARISELVGLDRAHVDRAQHVLTITGKGDKQRRVPYGERAGDA 270 Query: 245 LAMTPIGKET---------FFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFS 293 LA+ + F+ +++ + H +R + Sbjct: 271 LAVWEHRRPALATERAGDAVFVGARGGRIDPRVARRVVADALNDVPDTSARGPHSLRHSA 330 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSR 337 AT D GA + G TV + YT +RI+ + Sbjct: 331 ATHLLDGGADLRTVQELLGHATVATTQIYTHVSVERIKRAYSQAH 375 >gi|239907848|ref|YP_002954589.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1] gi|239797714|dbj|BAH76703.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1] Length = 366 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 44/356 (12%), Positives = 88/356 (24%), Gaps = 48/356 (13%) Query: 17 RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK--------- 67 R G+ + Y+ +G R + AY AL K+ R + Sbjct: 6 RDGRWMVYYTDVNGSRRDKSFGRG---DNAYAEALAFDQEKKSASKQSRGEVSSSVSIES 62 Query: 68 ----------------PTTLKWLISEYRKSAHWGSLAV-NSRISFESYFDQIIRKSGDFD 110 K L +Y + N++ + +Q GD Sbjct: 63 EQPVQSEDVPVNTSPFEIIFKDLADKYIEHLEVSGRTETNTKKLKKMIENQFNPLIGDKV 122 Query: 111 YRKITT-------KHIRSGVESRKHTPS---SAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 ++T I + P + ++ + +F + V +NP Sbjct: 123 VNEMTYVDDMVPFIKIFQNTPGKSGKPRSQLTVNRYGDYVNAIFNFGVAMGLTKVNPMRG 182 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220 + E R + S R A E G R +S ++ + Sbjct: 183 RRK---SKEKPREIQLTVEDIKRIMECAESHIRWAMEVCFNLGTRPGESELLALKWEHID 239 Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW---FKAKA 277 + + L + + + + F+ Sbjct: 240 FEKSVARIYASKTKTYRIVPISAKLLEKMRSRMAESTSGYVVDYRGERIGMIRKGFRGAC 299 Query: 278 TKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIR 330 +A + + +R AT GA + G + Y + + Sbjct: 300 QRANINYPVRMYDLRHLFATTMLSKGADLAAVSKLLGHSMISTTTSHYYHCLEGEK 355 >gi|153815915|ref|ZP_01968583.1| hypothetical protein RUMTOR_02160 [Ruminococcus torques ATCC 27756] gi|317500681|ref|ZP_07958899.1| phage integrase [Lachnospiraceae bacterium 8_1_57FAA] gi|331089843|ref|ZP_08338736.1| hypothetical protein HMPREF1025_02319 [Lachnospiraceae bacterium 3_1_46FAA] gi|145846734|gb|EDK23652.1| hypothetical protein RUMTOR_02160 [Ruminococcus torques ATCC 27756] gi|316897875|gb|EFV19928.1| phage integrase [Lachnospiraceae bacterium 8_1_57FAA] gi|330403540|gb|EGG83098.1| hypothetical protein HMPREF1025_02319 [Lachnospiraceae bacterium 3_1_46FAA] Length = 363 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 50/357 (14%), Positives = 104/357 (29%), Gaps = 43/357 (12%) Query: 18 HGKIIY---YFRKGHGRRIR-LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 +G Y RR + + + + + + + Sbjct: 9 NGTWYVMARYVNWKGERRQKCKRGFATKKEAQEW--------ERMFQLQNASDLDMSFEA 60 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR------ 126 Y + L N+ ++ E +I+ G +I+TK I + Sbjct: 61 FTELYIRDVKTR-LKENTWLTKEHIIRTKILPYFGKLRISEISTKEIITWQNELLAYRDE 119 Query: 127 KHTPSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQF 182 K P S + +F AVR + NP V + WTKE+ ++F Sbjct: 120 KKKPYSQTYLKTLHNQLSAIFNHAVRYYELRSNPAAKVGNMGSEEHKEMLFWTKEEYKKF 179 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------- 232 + AFE L + G+R + +++ K+ Sbjct: 180 SFEMMDKPVSFYAFEMLYWCGIREGELLALTAADFDFEKETVRINKSYQRLHGEDVITTP 239 Query: 233 ------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-S 285 +++P + + + + + A AGV + Sbjct: 240 KTKKSNRMIKMPKFLCEEMQEYLSMLYGLKKKDRIFTVTKSYLHHEMDRGANAAGVKRIR 299 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342 H +R ++ D G +A + G +++D Y + + + R+ + Sbjct: 300 IHDLRHSHISLLIDMGFSAVAIADRVGHESIDITYQYAHLFPSKQ--TEMADRLDDL 354 >gi|118476848|ref|YP_893999.1| integrase [Bacillus thuringiensis str. Al Hakam] gi|118416073|gb|ABK84492.1| integrase [Bacillus thuringiensis str. Al Hakam] Length = 382 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 50/334 (14%), Positives = 94/334 (28%), Gaps = 50/334 (14%) Query: 30 GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAV 89 GRR L + R I + + T + L + Y + L Sbjct: 39 GRRFILSRTGKRGKAKL----------SRTSIEVTQIETYTFQELFNIYMFAKEAEGLVR 88 Query: 90 NSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVESRKH----------------- 128 + + + YF + D + T IR + K+ Sbjct: 89 KTLENKKGYFLVFHRYLEEHHEDVTPNTLDTNTIREFLYYLKNDHVKHKNNHCVKEKYKS 148 Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-- 183 + S + MR + + V +EYV +NP ++ K + I + + ++ Sbjct: 149 VGVSVSYINTIMKHMRAFYNFLVEEEYVQLNPFTKIKSLKEVQDNIEALSVDQLKTLLKQ 208 Query: 184 --SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI----KTQKTGTIITVEL 237 G + + L +G+R S++ + + I K V + Sbjct: 209 PNQRTYAGFRDYVLMMLLADTGMRISEALNLQQEDIDFKTNVIELKGTNTKNRKTRYVPI 268 Query: 238 PDGFMKLLA-----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGV 289 KLL + F ++ +F K +G+ S H Sbjct: 269 SQKTSKLLRELLVEIEEFDTLHIFATVYGNTIDPARFRQRLKMYGNNSGIKGVRVSPHTF 328 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323 R A L G +++ Y Sbjct: 329 RHTFAKYYLLNNGDVMTLQKILGHSSIEMVRKYI 362 >gi|304438134|ref|ZP_07398077.1| phage integrase family prophage lambdaba04, site-specific recombinase [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368907|gb|EFM22589.1| phage integrase family prophage lambdaba04, site-specific recombinase [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 388 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 44/399 (11%), Positives = 114/399 (28%), Gaps = 67/399 (16%) Query: 1 MTPSLRLPPFVTKERTRHGKII-YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE 59 M+ +R+ + GK Y F R +T A+ + + T + Sbjct: 1 MSSKIRI--------RKRGKTYSYSFDISKNPRRMKEKGGFATEDDAFDAGVKAYTDWKN 52 Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKH 118 + L+ ++ + ++ ++ + +++S + I+ GD +++ + Sbjct: 53 GNIGITSEKVKLRDYLASWLENVVRPNVKRTTYQNYKSEINTHILPIIGDVYVQELRPRD 112 Query: 119 IRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 + + + + + Q T + V ++AV + + ++ R Sbjct: 113 VDAWLMQLARAGMSHGTIQQTKTVLSVALRYAVYPAELISSNPVTGIPIPRSAPRKVIER 172 Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-------------QNNIF 222 + + S+ + + ++G+R + + + + Sbjct: 173 TVITPEQFAAIPTDSRYYAVMKLMYHTGMRIGEVLGLTWDDVDLSTGEIHVVRQRNQHKY 232 Query: 223 SIKTQKTGTIITVELPDGFMKLLA------------------------------------ 246 + +I + M L Sbjct: 233 FETPKTETSIRSFYTDPNLMAFLQALKREQAKNEMRRGEAYQLVYEDVQNGGALVMLPKK 292 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHE 306 + + K ++ G+N +H R AT +AGA + Sbjct: 293 IHAPHNYVHRSLICIKPDGTIYTHEAVKNAVSRLGLN--SHSFRHTHATRLIEAGAKPVD 350 Query: 307 LMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVVD 344 + A G + Y + +R + +R +VD Sbjct: 351 VAARLGHADATITQNLYAHDTEEMR--KETARIFGGLVD 387 >gi|295107834|emb|CBL21787.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162] Length = 363 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 47/356 (13%), Positives = 103/356 (28%), Gaps = 41/356 (11%) Query: 18 HGKIIY---YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 +G Y R+ + + + + + + + Sbjct: 9 NGTWYVMARYVNWKGERKQKCKRGFSTKKEAQEWDRM-------FQLQNSSDMDMSFEAF 61 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR------K 127 Y + L N+ ++ E +I+ G +I+TK + + K Sbjct: 62 TELYIRDMKSR-LKENTWLTKEHIIRTKILPYFGKLKISEISTKEVIAWQNEMLAYRDEK 120 Query: 128 HTPSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQFK 183 P S + +F AVR + NP + WTKE+ ++F Sbjct: 121 KKPYSQTYLKTLHNQLSAIFNHAVRYYELRSNPAAKAGNMGSEEHKEMLFWTKEEYKKFS 180 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------- 232 + AFE L + G+R + +++ K+ Sbjct: 181 FEMMDKPVSFYAFEMLYWCGIREGELLALTAADFDFEKETVRINKSYQRLHGEDVITTPK 240 Query: 233 -----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SA 286 +++P + + + + + A AGV + Sbjct: 241 TKKSNRIIKMPKFLCEEMQEYLQMLYGLKKKDRIFTVTKSYLHHEMDRGAKAAGVKRIRI 300 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342 H +R ++ D G +A + G +++D Y + + + R+ + Sbjct: 301 HDLRHSHISLLIDMGFSAVAIADRVGHESIDITYQYAHLFPSKQ--TEMADRLDDL 354 >gi|260769653|ref|ZP_05878586.1| integrase [Vibrio furnissii CIP 102972] gi|260614991|gb|EEX40177.1| integrase [Vibrio furnissii CIP 102972] Length = 347 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 47/330 (14%), Positives = 101/330 (30%), Gaps = 29/330 (8%) Query: 15 RTRHGKII---YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + H K Y + G+R+R A+ + ++ ++ + TL Sbjct: 7 KDGHKKPWLCECYPKGRTGQRVRKR-FATKGEALAFEKFIMKEVDEKPWLGDKKDLR-TL 64 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 + L+ + K H +L + + I+ + G+ K T K RK Sbjct: 65 QDLVELWYK-LHGQNLKSA-KKVYPR-LRIIVEELGNPFAIKFTAKDFVHWRSGRKAKHR 121 Query: 132 -------------SAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKE 177 + L +R +F + E+ P SV++ + ++ + Sbjct: 122 HMEPGTWKAISAPTNNLDLRYLRAVFNELISLGEWTQPTPLASVKQIPVNESEMGFFSND 181 Query: 178 DMQQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234 D+ S+ + + L + L +G R S++ + + + K+ T Sbjct: 182 DITALFDRISKSKRAKEFELVCKICLSTGARISEANNLRLSQITQYKITFVDTKSKKNRT 241 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSA 294 V + + L E + ++ + ++ H R A Sbjct: 242 VPITEKLYNELMAFERTGEKDRLFSNCLY----GIAYIVDQTFPDLPDGQNTHVFRHTFA 297 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324 + +AG L G + Y Sbjct: 298 SRFMEAGGNILVLQKILGHSDIKMTMRYAH 327 >gi|161504575|ref|YP_001571687.1| hypothetical protein SARI_02688 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160865922|gb|ABX22545.1| hypothetical protein SARI_02688 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 387 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 47/378 (12%), Positives = 107/378 (28%), Gaps = 56/378 (14%) Query: 17 RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76 R F G+R + + A T + Sbjct: 6 RGETWYASFTLPDGKRFKQSL-GTTDKRQATELHDRLKAEAWRVSKLGETPDMTFEEACV 64 Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP------ 130 + + S +S ++ + IT I S ++ + Sbjct: 65 RWLEEKAHKK----SLDDDKSRIGFWLQHFAGIQLKDITETKIYSAIQKMTNRRHEENWK 120 Query: 131 -----------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167 ++ L+ ++ L + +E+ ++ V+ P+ K Sbjct: 121 MMEEACRKKGKQPPVFKPKPAAIATKATHLSFIKALLR-TAEREWKMLDKAPIVKVPQPK 179 Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227 + IR + ++ E + EF L +GLR S+ Q + Sbjct: 180 NKRIRWLEPHEAKRLIDECPEPLKS--VVEFALSTGLRRSNIINLEWQQIDMQRKVAWIH 237 Query: 228 KT----------------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271 ++ ++ + + + + + + Sbjct: 238 PEQSKSNQAIGVALNDTACRVLKKQIGNHHKWVFVYKESSTKPDRTKSPVVRKMRYDANT 297 Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 ++A +AG+ + H +R A+ AG L GW++++ Y A Sbjct: 298 AWRAALKRAGIEDFRFHDLRHTWASWLVQAGVPISVLQEMGGWESIEMVRRYAHLAPNH- 356 Query: 331 LGIKNSRRISSVVDSDDP 348 +++R+I S+ D+ P Sbjct: 357 -LTEHARQIDSIFDTSVP 373 >gi|157157271|ref|YP_001461927.1| phage integrase family protein [Escherichia coli E24377A] gi|157079301|gb|ABV19009.1| phage integrase family [Escherichia coli E24377A] Length = 356 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 59/345 (17%), Positives = 108/345 (31%), Gaps = 23/345 (6%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYM---SALTGSTPKREY 60 LPP + R+ Y G+ L A +G K Sbjct: 9 RRDLPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQTNIELFSGHKHKPLT 65 Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 TL + Y K + + I++ S I R D ITTK I Sbjct: 66 ARINSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIA 125 Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + + +SA +++ F+ A+ + ++ NP + K + R E Sbjct: 126 AMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEY 185 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 ++ +++ S RLA E + +G R D C + + ++ KTG I + Sbjct: 186 LKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTA 245 Query: 239 DGFMKLLAMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKAGV-----NK 284 L + ++ +++ S +F +G+ Sbjct: 246 LHVDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPP 305 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + H +R SA + + G K+ A Y R Sbjct: 306 TFHELRSLSA-RLYEKQISDKFAQHLLGHKSDTMASQYRDDRGRE 349 >gi|313898869|ref|ZP_07832402.1| site-specific recombinase, phage integrase family [Clostridium sp. HGF2] gi|312956333|gb|EFR37968.1| site-specific recombinase, phage integrase family [Clostridium sp. HGF2] Length = 368 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 55/354 (15%), Positives = 117/354 (33%), Gaps = 46/354 (12%) Query: 16 TRHGKIIYYFRKG-------HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 R+GK + R+ + + S L E + R Sbjct: 5 KRNGKWYIRGKVKLEDGSFKDYHRVARGCKLKKEAMKIEDSFLAKYNEDLEQM---RASN 61 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK- 127 T K L Y + + + ++ + + FDQ+ D I +K I+ +ES Sbjct: 62 ITFKELTEMYLREKQGSTKS-STLATDKYMFDQMNELY-DKRINLIRSKTIKDFIESYNT 119 Query: 128 --HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL---SVERPKRKTEGIRPWTKEDMQQF 182 + S + T + LF +AV+Q + NP + +RP E ++ +T ++ ++F Sbjct: 120 PEYKLSYVNKMRTYLNKLFSFAVKQNLIERNPVSSIPNFKRPDELKEEMQFYTPDEWKRF 179 Query: 183 KSFWSEGS-QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-------------------NNIF 222 + + L Y G+R + + Sbjct: 180 VQAFPKDDIMYYTICCTLYYMGMRRGEVLALNRKDDVDIVKGTIRVNKTVSQYVSGQRYV 239 Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKA 275 + + +++P+ ++++ ++ F+ Q + + F Sbjct: 240 VTPPKTKNSYRVIKMPEEELQIMKKYLEWYDSCPGASADGFLFGMDQPIIPKLLNKRFHR 299 Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 A AG+ + H +R AT+ + GA + G + +TY+ + Sbjct: 300 VADAAGLPQIRIHDLRHSHATLLINHGANIKAIADRLGNTVEEVLKTYSHLFNE 353 >gi|320180759|gb|EFW55685.1| Integrase [Shigella boydii ATCC 9905] gi|320196862|gb|EFW71484.1| Integrase [Escherichia coli WV_060327] Length = 326 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 42/307 (13%), Positives = 97/307 (31%), Gaps = 23/307 (7%) Query: 26 RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85 R G+RIR A+ + ++E+ R TL L+ + K H Sbjct: 18 RGRDGKRIR-RKFERKAEALAFERYTIANASQKEWGGQ-RADRRTLSELLDIWWK-YHGQ 74 Query: 86 SLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTS 139 + ++ F+ +++ GD +++ + + R + ++ + + Sbjct: 75 NHEHGTKE-----FNHLLKTISGIGDIPVSRMSKRALMDYRSMRLRDGISAATINRDMYR 129 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199 + +F ++ + + + P + + ++ + G L Sbjct: 130 LSGMFTKLIQLDEFSGQHPIHGLPPLAEANPEMTFLEKAEIEKLLNVLAG-DDLLVALLC 188 Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259 L +G R ++ + N + K G TV ++ K + Sbjct: 189 LSTGGRWTEVATLKPAQITNCRVTFLKTKNGKKRTVP--------ISEELEKKVKEEASA 240 Query: 260 DKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 K++ +F + N++ H +R A+ G L G ++ Q Sbjct: 241 KLFKVDYEKFCGILRRVKPDIPPNQATHILRHTFASHFMMNGGNIIALQQILGHASIQQT 300 Query: 320 ETYTKGA 326 Y A Sbjct: 301 MAYAHLA 307 >gi|303257603|ref|ZP_07343615.1| putative integrase/recombinase [Burkholderiales bacterium 1_1_47] gi|302859573|gb|EFL82652.1| putative integrase/recombinase [Burkholderiales bacterium 1_1_47] Length = 358 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 63/370 (17%), Positives = 122/370 (32%), Gaps = 60/370 (16%) Query: 13 KERTRHGKIIYYFRKG--HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 + TR +Y ++ ++ + + L E ++ R T Sbjct: 5 RRTTRGTYEVYGYKTKLDGTKQRFSKTFKTRAEAKRFHAEL-------ELGSAERSSQIT 57 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---- 126 L LI EY A + + + K IT K I + +E R Sbjct: 58 LSALIDEYIVEATSQKRSKRTEEIRLRRLQR--DKLATRALSSITKKTIENYIERRLQER 115 Query: 127 ------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 +PS+ + LT + +F++A++ E +NPC VE+P+ R + ED++ Sbjct: 116 AKNRDSNISPSTVNRELTILSDVFQYAIKNELTDVNPCRGVEKPREPEHRERVASGEDIE 175 Query: 181 QFKSFWSEGSQ---------PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG- 230 + AF F +G+R + + + +N+ + + T Sbjct: 176 KLLLACGWDGHTVPKNKMQLAVAAFLFSCQTGMRAGELLKIEYSWIDDNVLHVPAEATKT 235 Query: 231 -TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV------- 282 + V L ++L + + I N F+ +AG+ Sbjct: 236 LSRRDVALSARAREILKLVMELEYEPRIFGGLNDHNRDTL---FRKVRDRAGLGPEYDSQ 292 Query: 283 ------NKSAHGVRKFSATISA----DAGA---TAHELMATYGWKTVDQAETYTKGADRI 329 + H R AT +A + GA L G K + + Y + + Sbjct: 293 NRLIKEGLNFHDGRATFATWAASPDPETGAPRLDVLALARQTGHKDLKMLQRYYRAS--- 349 Query: 330 RLGIKNSRRI 339 + ++R+ Sbjct: 350 --AEEIAKRL 357 >gi|17386060|gb|AAL38574.1|AF445082_1 class I integrase [Acinetobacter baumannii] gi|47155069|emb|CAG26808.1| DNA integrase [Acinetobacter baumannii] gi|110350561|emb|CAK55555.1| integrase [Pseudomonas putida] gi|110350568|emb|CAK55561.1| integrase [Acinetobacter baumannii] gi|195977009|gb|ACG63564.1| DNA integrase [Citrobacter youngae] Length = 337 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 35/303 (11%), Positives = 85/303 (28%), Gaps = 52/303 (17%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132 ++ + R+ + ++ + ++ ++ IR G + + + + + + S Sbjct: 16 VLDQLRERIRYLHYSLPTEQAYVNWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 ++ L + + + + RP+ T +++ + + Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230 RL + L +G+R S+ + V+ L + +I ++ Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193 Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265 + + A + + M Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253 Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 F FK +AG+ K + H +R AT +G + G V YT Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313 Query: 324 KGA 326 Sbjct: 314 HVL 316 >gi|306823936|ref|ZP_07457310.1| phage integrase [Bifidobacterium dentium ATCC 27679] gi|309802320|ref|ZP_07696427.1| site-specific recombinase, phage integrase family [Bifidobacterium dentium JCVIHMP022] gi|304552934|gb|EFM40847.1| phage integrase [Bifidobacterium dentium ATCC 27679] gi|308220920|gb|EFO77225.1| site-specific recombinase, phage integrase family [Bifidobacterium dentium JCVIHMP022] Length = 367 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 49/344 (14%), Positives = 100/344 (29%), Gaps = 32/344 (9%) Query: 11 VTKERTRHGKIIYY--FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 + T+ G Y +R + Y A + P Sbjct: 3 IYPYNTKSGDKRYRVTYRDPDHSQRTKRGFRRRKDAQDY-LARMTTYISDNDYIDPNAGK 61 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK 127 T + + K + E + + G+ + I I++ V Sbjct: 62 TLVCQFADTWLKGKK-NVVKPKYYADLECSWRVHVCNAWGNREIASIRHSEIQTWVSELA 120 Query: 128 HTPSSAIQFLT--SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 S+ I ++ + AVR + NP + P+++ + T + Sbjct: 121 KKRSATITIRAHGVLKGVLDLAVRDGSIRRNPADGCQLPRKQRKERTHLTPAQVIDLAHA 180 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------------- 232 + L + GLR ++ V+H+ ++ + + Sbjct: 181 ---AGTYQALILTLGFCGLRWGEAAALRVKHVDTQNNRLRVRLSWVRSGKKHFEGAPKTW 237 Query: 233 --ITVELPDGFMKLLAMTPIGKETFFINND-----KQKMNATQFSIWFKAKATKAGVN-K 284 V +PD M + GK + + + + W+ +GV Sbjct: 238 EVRDVPVPDQVMSAIKEQCEGKGPEDLVFTAPSGGHLREQSAKNHGWYARALRDSGVPTL 297 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD 327 + H +R +A+I+ +GA + G K +TY D Sbjct: 298 TCHDLRHTAASIAISSGANVKAVQRMLGHKNAAMTLDTYADLFD 341 >gi|187939931|gb|ACD39068.1| phage integrase [Pseudomonas aeruginosa] Length = 400 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 55/368 (14%), Positives = 102/368 (27%), Gaps = 26/368 (7%) Query: 7 LPPFVTKERTRHGKI----IYYFRKGHGRRIRLPYPHESTFIPAY-----MSALTGSTPK 57 L P + T G+ Y G R+ L E T A A Sbjct: 27 LVPGFLCKITPVGRKVFMLQYRTNAGERRKPALGLFGELTVEQARSLAQEWLAQVRRGGD 86 Query: 58 REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITT 116 + ++ T++ L + + ++R+ ++ D+ II G + Sbjct: 87 PAADKAEARQAPTVEELCKRFMEDYSKKRNKPSTRVGYQGVIDRCIIPLLGRKKVHDVKR 146 Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + +E + + A + + +R +F A Y P Sbjct: 147 PDVAGLMEKLSYKQTEANKAFSILRKMFNMAEVWGYRPDGTNPCRHVPMFPAGKSTHLIS 206 Query: 177 EDMQQFKSFWS--------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228 +D E LA R S+ + + + Sbjct: 207 DDDMGKLFRQLDKIEVEGLENYVIPLAIRLQFEFAARRSEIVTLEWEWVDLENRRVVWPD 266 Query: 229 TGTIITVELPDGFMKLL-----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG-V 282 + T + L + Q + ++ + AG Sbjct: 267 SKTGGMSKPMSEEAYRLLSTAPRQEGNPYVLPSPRHPAQHLTTGEYYGGWCRVLKAAGAT 326 Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIK-NSRRIS 340 + HG+R SAT A++G MA KTV Y D +R + + R Sbjct: 327 HVGTHGIRHRSATDIANSGIPVKVGMALTAHKTVVMFMRYVHTEDDPVREAAELVANRRK 386 Query: 341 SVVDSDDP 348 ++ + P Sbjct: 387 AITGAKQP 394 >gi|303243919|ref|ZP_07330259.1| integrase family protein [Methanothermococcus okinawensis IH1] gi|302485855|gb|EFL48779.1| integrase family protein [Methanothermococcus okinawensis IH1] Length = 291 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 36/267 (13%), Positives = 78/267 (29%), Gaps = 16/267 (5%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHT 129 K L+ +Y + + + S + D + IT S K + Sbjct: 6 KELVRKYLDFHSSK--SKETLKRYRSSLHIFMEFFPDKSWDDITVDDAIFFYNSYLSKVS 63 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV-ERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + ++ L + W V +Y+ N + K + G E+ + Sbjct: 64 KDTVVKRLKDVSRFLDWCVEYKYILQNNIKLYVKSLKLQNNGRDISLNEEEVNILLSNIK 123 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLA 246 + F+L +G+R S+ + + I+ K V + D L+ Sbjct: 124 DYLYYVYTLFILTTGVRISEFKNITMNDIHLEDRLVYIRGGKGNKDRMVFICDELYPFLS 183 Query: 247 MTPIGKET---------FFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATIS 297 +E + + ++ + + + V + H +R T++ Sbjct: 184 NYIKHREMLNPKTDKLVNKNGYKLSEGHICEYRDYLREVSKGLSVKVTPHVLRHTFGTLA 243 Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324 G L G ++ Y Sbjct: 244 CKHGMNLQVLSKLMGHSSMAITSKYLH 270 >gi|332042847|gb|EGI79046.1| integrase family protein [Lacinutrix algicola 5H-3-7-4] Length = 279 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 39/260 (15%), Positives = 81/260 (31%), Gaps = 9/260 (3%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESRKHTPSSAIQ 135 +++K + NS ++ + G D + K + + + H + A Sbjct: 9 DFQKLLKIKRYSENSINTYLGLIKSFHKYVGFQIDLISLENKQLLAIIIQIVHDKNLAYT 68 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195 + K R+ Y V +R + + ++++ + + + Sbjct: 69 THKQLCAALKLFYREMYSRDIDFSPVYPTRRPSPLPNIISTKEVKAISESHN-NIKHKAM 127 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253 + GLR + ++ + N I++ K + LP+ L + Sbjct: 128 LTAIYALGLRSGELINIKIEDINSDRNQIFIRSGKGRKDRVLPLPNSLRVLFREYYLQYR 187 Query: 254 TFFINNDKQ---KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELM 308 + K FK KAG+NK + H +R AT D G + Sbjct: 188 PKNYLFCGRNGDKYAPESLRKVFKMAVFKAGINKQITLHSLRHAYATHLMDRGTDVRIIK 247 Query: 309 ATYGWKTVDQAETYTKGADR 328 G ++ YT + Sbjct: 248 ELLGHSSIKTTLIYTHVTQK 267 >gi|283771192|ref|ZP_06344083.1| integrase [Staphylococcus aureus subsp. aureus H19] gi|283459786|gb|EFC06877.1| integrase [Staphylococcus aureus subsp. aureus H19] Length = 390 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 51/387 (13%), Positives = 106/387 (27%), Gaps = 56/387 (14%) Query: 14 ERTRHGKIIYYFRKGH----GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 R Y G G+ + A A R + + Sbjct: 4 YEKRGNTWRYRISLGKDAETGKYKYISNSGFKRKSDAKHHAEMVERQLRN-GDYIAPSTS 62 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--K 127 T K + ++ S + + V+S + E + I + + + I + V + Sbjct: 63 TFKQVADDWI-SQYANEVKVSSVRAREKAINHAIERFNNKPIQTINKHEYQRFVNDISAQ 121 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---- 183 ++ + + S ++FK+A + + I P ++RPK+K E ++F Sbjct: 122 YSKNYVDSIIASTNMIFKYAYDMKLIRIMPSEGIKRPKKKISVEELEDTEIHKKFLEKDE 181 Query: 184 --------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI----------- 224 F L Y+G+R + + +I Sbjct: 182 LFQFLEVAKNHHSPQNSFEVFCTLAYTGMRAGELLALKWSDIDFENNTINITKTYYNPNN 241 Query: 225 --------------------KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264 ++ D + F + + + Sbjct: 242 NKKQFQILTPKTESSIGKISVDPHVIKLLKNYKVDVQDTWKNELYVDNNFVFTDVNGYPL 301 Query: 265 NATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE- 320 + +W KA K + S H R + +AG E+ K ++ Sbjct: 302 VIKKLQLWIKAILKKTDITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMN 361 Query: 321 TYTKGADR-IRLGIKNSRRISSVVDSD 346 Y K + + + ++ V D Sbjct: 362 IYAKITNSYKKDASQKFSKLMENVSKD 388 >gi|187922278|ref|YP_001893920.1| integrase family protein [Burkholderia phytofirmans PsJN] gi|187713472|gb|ACD14696.1| integrase family protein [Burkholderia phytofirmans PsJN] Length = 405 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 42/321 (13%), Positives = 83/321 (25%), Gaps = 14/321 (4%) Query: 11 VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTF-IPAYMSALTGSTPKREYINSPRKKPT 69 +T ++ + G + G RL A+ + + RK Sbjct: 1 MTIKQVKSG-WQVNVQPGGRGAKRLKKTFAKKADAEAWKRHVQAKVQETPEWVPARKDAR 59 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129 L L+ + +NS + + G+ + T R Sbjct: 60 LLSELVELWY---RLHGSGLNSGEDTKRRLLAMCEAMGNPRADRFTADMFAEYRAQRLAA 116 Query: 130 PSSAIQF---LTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 +A MR +F R +++ NP + K + + T ++ Sbjct: 117 GITANNMNREQAYMRAVFNELKRLKQWKRANPLEDLRAFKIQENELTFLTLPQVRTLLDE 176 Query: 186 WSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 G L L +G R ++ + ++N + K+ V + K Sbjct: 177 LPRGRNVHVTLVSMVCLATGARWGEAEGLRISQVRNGVIQFVKTKSSKARAVPISKSLAK 236 Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGAT 303 L + F + + H +R A+ G Sbjct: 237 GLHAHFRTHGEGERIFGTAW---SAFREGLQRAKIVLPKGQLTHVLRHTFASHFMMNGGN 293 Query: 304 AHELMATYGWKTVDQAETYTK 324 L G ++ Y Sbjct: 294 ILSLQRALGHHSLTMTMRYAH 314 >gi|186471692|ref|YP_001863010.1| integrase family protein [Burkholderia phymatum STM815] gi|184198001|gb|ACC75964.1| integrase family protein [Burkholderia phymatum STM815] Length = 292 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 37/265 (13%), Positives = 85/265 (32%), Gaps = 18/265 (6%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHT 129 L +L+ N++ S+ R + + IR+ E RK Sbjct: 4 LRQRMLHDMQIRNLSDNTQKSYLLQVSSFARHF-RRSPEMLGPEEIRAWLIYLREERKLA 62 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 P+S + ++R L++ +++++ P++ + E++ F Sbjct: 63 PASLSPAIGALRFLYRVTLKRDWSD----EDFPLPRKPVRLPVVLSLEEITTFFDSI-PS 117 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--TGTIITVELPDGFMKLLAM 247 + R +GLR S+ V + + I+ + V L +++L Sbjct: 118 LKHRTILMVAYAAGLRVSEVVHLKVTDIDSKRMVIRVNQGKNRKDRYVMLSPRLLEVLRT 177 Query: 248 TPIGKETFFI----NNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAG 301 + + T + ++G+ + H +R AT + G Sbjct: 178 YWQDAHPRDWLFPGDIPGHPITRTAVARICALARQRSGITKPVTPHSLRHAFATHLLETG 237 Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326 + G +++ Y + A Sbjct: 238 TDVRRIQLLMGHRSLATTSRYLRIA 262 >gi|299536395|ref|ZP_07049707.1| tyrosine recombinase xerC-like protein [Lysinibacillus fusiformis ZC1] gi|298727879|gb|EFI68442.1| tyrosine recombinase xerC-like protein [Lysinibacillus fusiformis ZC1] Length = 399 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 46/369 (12%), Positives = 105/369 (28%), Gaps = 48/369 (13%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63 + P + G+ ++ +R + + + +AL + Sbjct: 5 KSKKEPEIYYYFNAKGEKLWMYRHKFYNAAGIRKEKKKSSFKTEKAALKALLEVKAATLQ 64 Query: 64 PRKK-----PTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDY---RKI 114 K T+ + ++ + V + + G + +I Sbjct: 65 GETKHIEYDNLTVGQWLDDWLEMNK-NKWKVTTMKQRKLAVKNHFKPLLGHYKLQKLDRI 123 Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK---TEGI 171 T + + + +K P + F + ++ AV +E + N V + Sbjct: 124 TYQRVFIDILEQKFKPGTVNLFHSIFKIAINAAVEEELLIRNRFTKVVIKNEFELTKQTY 183 Query: 172 RPWTKEDMQQFKS--FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI---KT 226 T E++ F E +Y+G+R + C Q++ I +T Sbjct: 184 NYLTIEELNIFLHTAKKYEDITGYTFLLVAVYTGMRKGEICGLQWQNIDFKNNIITIERT 243 Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM---------------------- 264 + T + + + ++L + + +++ Sbjct: 244 RDDIGTRTPKTKNSYRRILVDDLVIDQLKKYQVWCKQILLKHGKQLDDQLFVFINTFNNL 303 Query: 265 -NATQFSIWFKAKATKAGV-------NKSAHGVRKFSATISADAGATAHELMATYGWKTV 316 + F+ KAG+ + HG+R ATI ++G + G Sbjct: 304 LHGAAIHKMFRDTILKAGILNNDGEPKITFHGLRHTHATILLNSGQNVKAIAQRLGNTPA 363 Query: 317 DQAETYTKG 325 E Y Sbjct: 364 MIYEIYGHV 372 >gi|116623840|ref|YP_825996.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] gi|116227002|gb|ABJ85711.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] Length = 297 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 36/269 (13%), Positives = 83/269 (30%), Gaps = 23/269 (8%) Query: 79 RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----KHTPSSAI 134 + + A ++ + K+ +H+R + Sbjct: 9 LEELQRRNYAQSTVKGYLRIVQDFAEHFHQQP-DKLGPEHLRQYQAHLFRDKHLNAGTVQ 67 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194 Q++ ++R F +++ Y+ + PKR + + +++ + + Sbjct: 68 QYVAALRFFFNKTLKRHYL----LDDIPMPKRHRKLPEILSPDEVAL-LIGSASNLLHQT 122 Query: 195 AFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252 L +G+R ++ CR + Q + I+ K G V L ++ L + Sbjct: 123 MLMTLYSTGVRRAELCRLKSADIDSQRMMVHIRQGKGGHDRDVPLSPRLLETLRVYWRWM 182 Query: 253 ETFFI--------NNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302 + + + A +AG+ + S H +R A+ +AG Sbjct: 183 KPKTYLFPGTVNNWRADVPITTKVPWEACRQAAQRAGITKHVSPHTLRHCFASHLLEAGT 242 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRL 331 + G ++ Y R L Sbjct: 243 DLRTIQMLLGHAKLEHTAMYLH-LSRKHL 270 >gi|170767791|ref|ZP_02902244.1| site-specific recombinase, phage integrase family [Escherichia albertii TW07627] gi|170123279|gb|EDS92210.1| site-specific recombinase, phage integrase family [Escherichia albertii TW07627] Length = 387 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 52/371 (14%), Positives = 105/371 (28%), Gaps = 60/371 (16%) Query: 21 IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK 80 F +G+R + A T + + + Sbjct: 10 WYASFTLPNGKRFKQSL-GTKDKRQATELHDKLKAEAWRVSKLGEIPDMTFEEACVRWLE 68 Query: 81 SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---------- 130 S +S ++ R IT I S ++ + Sbjct: 69 EKAHKK----SLDDDKSRIGFWLQHFAGMQLRDITESKIYSAMQKMTNRRHEENWKLRAE 124 Query: 131 -------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 ++ L+ ++ L + A +E+ ++ ++ P+ K + I Sbjct: 125 ACRKKGKPVPEYTPKPASVATKATHLSFIKALLR-AAEREWKMLDKAPIIKVPQPKNKRI 183 Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQ 227 R + Q+ E + EF L +GLR S+ Q + + + Sbjct: 184 RWLEPHEAQRLIDECPEPLKS--VVEFALATGLRRSNIINLEWQQIDMQRRVAWINPEES 241 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------------FSIWFKA 275 K+ I V L D ++L + + + +KA Sbjct: 242 KSNRAIGVALNDTACRVLKKQIGNHHRWVFVYKESCTKPDGTKAPTVRKMRYDANTAWKA 301 Query: 276 KATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334 +AG++ H +R A+ AG L GW++++ Y L Sbjct: 302 ALRRAGIDDFRFHDLRHTWASWLVQAGVPLSVLQEMGGWESIEMVRRYAH------LAPD 355 Query: 335 NSRRISSVVDS 345 + + +DS Sbjct: 356 HLTEHARQIDS 366 >gi|155024|gb|AAA72104.1| integrase [Shigella sonnei] Length = 337 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 35/303 (11%), Positives = 84/303 (27%), Gaps = 52/303 (17%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132 ++ + R+ + ++ + ++ + IR G + + + + + + S Sbjct: 16 VLDQLRERIRYFHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 ++ L + + + + RP+ T +++ + + Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230 RL + L +G+R S+ + V+ L + +I ++ Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193 Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265 + + A + + M Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253 Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 F FK +AG+ K + H +R AT +G + G V YT Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313 Query: 324 KGA 326 Sbjct: 314 HVL 316 >gi|88705870|ref|ZP_01103579.1| prophage integrase [Congregibacter litoralis KT71] gi|88699941|gb|EAQ97051.1| prophage integrase [Congregibacter litoralis KT71] Length = 399 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 56/365 (15%), Positives = 103/365 (28%), Gaps = 30/365 (8%) Query: 7 LPPFVTKERTRHGKI----IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE--- 59 L P + T G+ Y G R+ L E T A A + R Sbjct: 27 LVPGFLCKITPAGRKVFMLQYRTNAGERRKPALGLYGELTVDQARSLAQSWLADVRRGGD 86 Query: 60 --YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITT 116 + +K T+K L ++ + +++ ++ D+ II G F + + Sbjct: 87 PGAAKAEARKAPTVKELCVKFMEDYSRHRNKPSTQRGYQGNIDRNIIPILGRFKVKDVKR 146 Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + + ++ + P A + L+ +R +F A Y P Sbjct: 147 ADVATMMKKLDYKPGEANKALSVLRKMFNLAEIWGYRPDGSNPCRHIPLYTGGKTTRLIT 206 Query: 177 EDMQQFKSFWSEGSQPR--------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228 + + + LA R S+ + + + Sbjct: 207 DGEMAKLFKHLDQVEAERLVPYVIPLAIRLQFEFAARRSEIVLLEWEWIDLENRRVVWPD 266 Query: 229 TGTIITVELPDGFMKLL-----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV- 282 + T + L N + ++ + AGV Sbjct: 267 SKTGGMSKPMSEEAYRLLSTAPRQEGGRYVLPSPRNPLTHLTYGEYYGGWTRTLKAAGVT 326 Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342 + HG+R SAT A++G M KTV Y D R + + Sbjct: 327 HVGTHGIRHRSATDIANSGIPVKVGMVLTAHKTVTMFMRYIHTED------DPVREAAEL 380 Query: 343 VDSDD 347 V + Sbjct: 381 VANRR 385 >gi|71901322|ref|ZP_00683418.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Ann-1] gi|71728906|gb|EAO31041.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Ann-1] Length = 339 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 58/340 (17%), Positives = 105/340 (30%), Gaps = 26/340 (7%) Query: 1 MTPSLRLPPFVTKERTR---HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPK 57 M + + R R G + YY+ G R P + + L + Sbjct: 1 MGRKPSKAGAIPRFRVRPQKSGVVYYYYDHGGKPRKETPLGRDYGLAIKRWAELEHAQIT 60 Query: 58 REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKIT 115 T + + YR A +++ Y + +++ D + I Sbjct: 61 PAI-------AVTFRHVAERYRAEVIPTK-ARSTQQMHHIYLNYLLQFFDDPPAPFEAIR 112 Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 IR ++ R SA + ++ L W + + +R E R Sbjct: 113 PVDIRKYLDWRPFK-VSANREISVFSHLCNW--ARSKGITDLANPCAGIRRNKESGRDVY 169 Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 +D + + R A + +G R SD +H+ N I KTG + + Sbjct: 170 IDDATYRAVYQAADQTLRDAMDLAYLTGQRVSDVLSMDERHIVNGALEICQAKTGAKLAI 229 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF-------SIWFKAKATKAGVNKS--- 285 + L+ K + + + ++ F FK AG+ K Sbjct: 230 AITGELAVLIKRIFDHKRGLKLRSTRLIVDEKGFGLGCMALRYRFKKARAAAGIAKQAFQ 289 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 +R +AT AD + A G +V E Y + Sbjct: 290 FRDLRAKAATDKADLAGDIRQAQAQLGHTSVVMTEHYVRK 329 >gi|71042126|pdb|1Z1B|A Chain A, Crystal Structure Of A Lambda Integrase Dimer Bound To A Coc' Core Site gi|71042127|pdb|1Z1B|B Chain B, Crystal Structure Of A Lambda Integrase Dimer Bound To A Coc' Core Site Length = 356 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 57/335 (17%), Positives = 106/335 (31%), Gaps = 23/335 (6%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALT---GSTPKREY 60 LPP + R+ Y G+ L A + + G K Sbjct: 9 RRDLPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLT 65 Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 TL + Y K + + I++ S I R D ITTK I Sbjct: 66 ARINSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIA 125 Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + + +SA +++ F+ A+ + ++ N + K K R E Sbjct: 126 AMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNHVAATRAAKSKVRRSRLTADEY 185 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 ++ +++ S RLA E + +G R D C + + ++ KTG I + Sbjct: 186 LKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTA 245 Query: 239 DGFMKLLAMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKAGV-----NK 284 L + ++ +++ S +F +G+ Sbjct: 246 LHIDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPP 305 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 + H +R SA + + G K+ A Sbjct: 306 TFHELRSLSA-RLYEKQISDKFAQHLLGHKSDTMA 339 >gi|322435168|ref|YP_004217380.1| integrase family protein [Acidobacterium sp. MP5ACTX9] gi|321162895|gb|ADW68600.1| integrase family protein [Acidobacterium sp. MP5ACTX9] Length = 311 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 42/269 (15%), Positives = 76/269 (28%), Gaps = 27/269 (10%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHTP---SSAIQFLTS 139 L NS ++ Q D T + + + + S + L+ Sbjct: 20 RGLRPNSCEAYGRDLLQFAEFLEKRDGLLVGATQQDVGEFLGQLRGHAVESRSVARKLSG 79 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----------SFWSEG 189 ++ +KW + + V +P L+V P + + ++ Sbjct: 80 LKGFYKWLLMDKRVRHDPTLNVASPSVWKILPKSMAESEVVGMLERTGVAARAADADGIA 139 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMT 248 + E L GLR + C V+ ++ + + K V L LA+ Sbjct: 140 LRDHAILELLYAGGLRVGEICALRVEDVRLEDQRAQVRGKGDKERIVPLGRQACDALAIY 199 Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----------NKSAHGVRKFSATIS 297 M F T+ V + S H +R AT Sbjct: 200 LDRGRPGLARGAGAGMRREMFLSVRGRALTRQWVWEMVRGCSENGDASPHKLRHSCATHM 259 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGA 326 + GA + G + + YT A Sbjct: 260 VEHGADLRSVQTFLGHADIATTQVYTHVA 288 >gi|311113293|ref|YP_003984515.1| tyrosine recombinase XerD [Rothia dentocariosa ATCC 17931] gi|310944787|gb|ADP41081.1| tyrosine recombinase XerD [Rothia dentocariosa ATCC 17931] Length = 391 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 40/237 (16%), Positives = 75/237 (31%), Gaps = 31/237 (13%) Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 R P+S + + ++R + + +P +V+ PK + + E M Sbjct: 135 RDVTLPLPLGPNSIARTMAAVRGAHSFWHASRILETDPAAAVKPPKNVKRLPKAVSVEQM 194 Query: 180 QQFKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------------NNI 221 Q+ + G + R EFL +G R S+ + + Sbjct: 195 QKLLAIPSLKTPTGLRNRAILEFLYATGARVSEMLATDLDDIHLGEKPRDENGESIAVPG 254 Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN-----------DKQKMNATQFS 270 + K G V L + L + F ++ ++ Sbjct: 255 YVRLFGKGGKERLVPLGSYAQRALEDYIVRARPKFASHGKGTAALFLNGRGSRLGRQGAW 314 Query: 271 IWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 + K A +AG+ + S H +R AT GA + G ++ + YTK Sbjct: 315 LILKETAEEAGLSSDFSPHSIRHSFATHLVQGGADIRVVQELLGHASIATTQVYTKV 371 Score = 40.5 bits (93), Expect = 0.35, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 19/58 (32%), Gaps = 4/58 (6%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKH 128 I +Y + N+ S+ + + G D +I T +R+ + Sbjct: 20 IEQYLIHLRVEKGSSENTIASYARDLRRYVEFMASRGIIDAHRIRTADVRAFMRELAQ 77 >gi|160945136|ref|ZP_02092362.1| hypothetical protein FAEPRAM212_02655 [Faecalibacterium prausnitzii M21/2] gi|158442867|gb|EDP19872.1| hypothetical protein FAEPRAM212_02655 [Faecalibacterium prausnitzii M21/2] Length = 358 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 42/348 (12%), Positives = 99/348 (28%), Gaps = 42/348 (12%) Query: 7 LPPFVTKERTRHGKII---YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63 +P + + ++ G Y+ ++ +L + + + Sbjct: 1 MPAY---KDSKQGTWYASFYFENWQGVKQKKLKRGFATKKDALAW-------EREFLLQQ 50 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG 122 T + + Y L N+ + E +I+ + +I + + + Sbjct: 51 AADLTMTFEAFVEIYITDKK-KRLRENTWSTKEHIIRTKILPYFKEKRLSEIKPRDVIAW 109 Query: 123 VESR---------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR- 172 ++P+ + + AVR + N + + Sbjct: 110 QNEMLNYRDKNGKAYSPTYLKTLHGQLSAILNHAVRFYGLKSNAAATAGCMGSEKHKEML 169 Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 WTKE+ +F + Q AFE L + G+R + + + K+ Sbjct: 170 FWTKEEYLKFAEAMMDKPQSYYAFEVLYWCGIREGELLALTPADFDLDKGLLSITKSYQR 229 Query: 233 ----------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK 276 +++P + + ++ + Sbjct: 230 LKGRDVITDPKTPKSVRVIQMPQFLTDEIRDYLKSLYKVQPDQRIFEVTKSYLHHEMDRG 289 Query: 277 ATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 A AGV + H +R ++ + G +A + G ++VD Y Sbjct: 290 AKAAGVKRIRIHDLRHSHVSLLIEMGFSALAIADRVGHESVDITYKYA 337 >gi|329963640|ref|ZP_08301114.1| site-specific recombinase, phage integrase family [Bacteroides fluxus YIT 12057] gi|328528050|gb|EGF55031.1| site-specific recombinase, phage integrase family [Bacteroides fluxus YIT 12057] Length = 379 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 60/352 (17%), Positives = 119/352 (33%), Gaps = 28/352 (7%) Query: 11 VTKERTRHGKIIY-----YFRKGHGRRIRLPYPHESTFIPAYM-SALTGSTPKREYINSP 64 + + +GK Y Y + + ++ A + K N Sbjct: 25 IYLDIYMNGKRRYEFLKLYIIPVNDKTDKIRNRETLKLANAIKSQKIIELQNKAYGFNHN 84 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK---SGDFD-------YRKI 114 + TL I + +S+ N+ + + ++ K G D + Sbjct: 85 KLPDITLIDYIKKIAQSSTSNEARKNALRAVVHHLERYDSKGILLGKVDKAYVIGFIGYL 144 Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE---RPKRKTEGI 171 E +K ++ + + +R AV +EY+A NP ++ +PKR+ Sbjct: 145 RNAKQEHCKEEKKLHANTQLHYFKMLRYCLNHAVSEEYIACNPIDKMKSDEKPKRRKADR 204 Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-----SIKT 226 T ++++ S + AF F + GLR D + + + +I Sbjct: 205 EYLTIDELRYLVRTPFYNSLLKKAFLFSCFCGLRHCDIVALEWKDIHYDTNGNASINIVQ 264 Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284 QKT I++ L +K L ++T I + + + A +AG+ + Sbjct: 265 QKTHEAISLPLSPEAVKYLPNREKAQDTDKIFKGLISLGRS--NEILDRWAKQAGILKHV 322 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 + H R AT+ GA + + G + + Y K D ++ Sbjct: 323 TFHVARHTHATMMLTLGADLYTISKLLGHTNIQTTQIYAKLVDESKMKAIAL 374 >gi|23097608|ref|NP_691074.1| integrase [Oceanobacillus iheyensis HTE831] gi|22775831|dbj|BAC12109.1| integrase [Oceanobacillus iheyensis HTE831] Length = 392 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 48/381 (12%), Positives = 106/381 (27%), Gaps = 64/381 (16%) Query: 10 FVTKERTRHGKIIYYFR--------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61 + K + G Y F G +R AL+ + + + Sbjct: 3 NIKKYTKKDGTTAYMFNAYLGKDPLTGKKKRTTRRGFKTK---KDANIALSKILVEVDEL 59 Query: 62 NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIR 120 + T + + E+ K + + + ES F +I+ G + + IT H + Sbjct: 60 GIRQNDQLTFQEVFEEWFKQHR-REVKPTTVYAMESKFNRRILPVFGPYKMKDITRSHCQ 118 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC---------LSVERPKRKTEGI 171 + + + +F++A++ + + NP +E E Sbjct: 119 KAINGWAKELKTFKDYKIQANQVFRYAMKMDMIKRNPMDYVTLPKLKHEMEYVAELEEKK 178 Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI---------- 221 +T+E+++ F + L ++G R + + + Sbjct: 179 HYYTREELRTFLEAIQKDDMAYTMLRLLSFTGARKGELYALHWSDVDFHQKSISLKKTLI 238 Query: 222 ------FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF-------INNDKQKMNATQ 268 ++ + V + D + +L + + K Sbjct: 239 YTGGEKQLQTSKTKASRRIVSVDDETLAILKKWRSKQIQRYLTLELAAPFQSDDKQPIFT 298 Query: 269 FSIWFK---AKATKAGVN---------------KSAHGVRKFSATISADAGATAHELMAT 310 K A +N H R A++ AGA+ ++ + Sbjct: 299 VYNQLKHEMDYCRLAYLNDKLERIYQKNPELPQIKVHEFRHTHASLLFAAGASIKDVQSR 358 Query: 311 YGWKTVDQAE-TYTKGADRIR 330 G + YT D + Sbjct: 359 LGHTDIQTTMDIYTHVTDEAK 379 >gi|324114905|gb|EGC08871.1| phage integrase [Escherichia fergusonii B253] Length = 387 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 54/376 (14%), Positives = 108/376 (28%), Gaps = 61/376 (16%) Query: 17 RHGK-IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75 R G+ F +G+R + A T + Sbjct: 5 RRGEIWYASFTLPNGKRFKQSL-GTKDKRQATELHDKLKAEAWRVSKLGEIPDMTFEEAC 63 Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP----- 130 + + S +S ++ R IT I S ++ + Sbjct: 64 IRWLEEKAHKK----SLDDDKSRIGFWLQHFAGMQLRDITESKIYSAMQKMTNRRHEENW 119 Query: 131 ------------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 ++ L+ ++ L + A +E+ ++ ++ P+ Sbjct: 120 KLRAEACRKKGKPVPEYTPKPASVATKATHLSFIKALLR-AAEREWKMLDKAPIIKVPQP 178 Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IF 222 K + IR + Q+ E + EF L +GLR S+ Q + Sbjct: 179 KNKRIRWLEPHEAQRLIDECPEPLKS--VVEFALATGLRRSNIINLEWQQIDMQRRVAWI 236 Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------------FS 270 + + K+ I V L D ++L + + + Sbjct: 237 NPEESKSNRAIGVALNDTACRVLKKQIGNHHRWVFVYKESCTKPDGTKAPTVRKMRYDAN 296 Query: 271 IWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +KA +AG++ H +R A+ AG L GW++++ Y Sbjct: 297 TAWKAALRRAGIDDFRFHDLRHTWASWLVQAGVPLSVLQEMGGWESIEMVRRYAH----- 351 Query: 330 RLGIKNSRRISSVVDS 345 L + + +DS Sbjct: 352 -LAPNHLTEHARQIDS 366 >gi|221202028|ref|ZP_03575064.1| phage integrase family protein [Burkholderia multivorans CGD2M] gi|221204841|ref|ZP_03577858.1| phage integrase family protein [Burkholderia multivorans CGD2] gi|221175698|gb|EEE08128.1| phage integrase family protein [Burkholderia multivorans CGD2] gi|221178111|gb|EEE10522.1| phage integrase family protein [Burkholderia multivorans CGD2M] Length = 339 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 45/327 (13%), Positives = 99/327 (30%), Gaps = 22/327 (6%) Query: 16 TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75 R GK RK R + + + +++ + TT+ L+ Sbjct: 6 KRDGKWQCQVRKTGFP-SRTRTFTSRADATEWGRMVEAEMDRGLFVSRDEAERTTIADLL 64 Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSA 133 Y + + +S + ++ GD+ +T+ H+ + ++R + +P + Sbjct: 65 DRYIREVSPTKRSGSSDKGRSAKLK---KQLGDYKLTALTSSHLVAYRDARLKEVSPQTV 121 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193 I L + A R+ + + + RK +G D Q +E R Sbjct: 122 IHELNLLNRALTLATREWGIVLPAGIPKVIKPRKPQGRDRRLHPDEIQAIIDATESPDLR 181 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253 + +G+R S+ +H+ + T T +P + + Sbjct: 182 DFIRLAVATGMRRSELASLRWEHINLERRTAHLPLTKTDTPRTVPLSSVAAAVLQERKDA 241 Query: 254 TFFINNDKQKMN-----------ATQFSIWFKAKATKAGVNK-----SAHGVRKFSATIS 297 + + A + + H +R + + Sbjct: 242 GCTVPFAVTPNSLTRAFRRAVRRARGLYESTCRVLERPADPQWLVGIRLHDLRHEATSRF 301 Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324 + G E+ + G KT+ + YT Sbjct: 302 FELGLQTLEVASITGHKTLSMLKRYTH 328 >gi|312965202|ref|ZP_07779439.1| integrase [Escherichia coli 2362-75] gi|312290293|gb|EFR18176.1| integrase [Escherichia coli 2362-75] Length = 356 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 59/345 (17%), Positives = 108/345 (31%), Gaps = 23/345 (6%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALT---GSTPKREY 60 LPP + R+ Y G+ L A + + G K Sbjct: 9 RRDLPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLT 65 Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 TL + Y K + + I++ S I R D ITTK I Sbjct: 66 ARINSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIA 125 Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + + +SA +++ F+ A+ + ++ NP + K + R E Sbjct: 126 AMLSGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEY 185 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 ++ +++ S RLA E + +G R D C + + ++ KTG I + Sbjct: 186 LKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTT 245 Query: 239 DGFMKLLAMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKA-----GVNK 284 L + ++ +++ S +F + G Sbjct: 246 LHVDALGISMKETLDKCKEILGGETIIASTHREPLSSGTVSRYFMRARKASDLSFEGDPP 305 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + H +R SA + + G K+ A Y R Sbjct: 306 TFHELRSLSA-RLYEKQISDKFAQHLLGHKSDTMASQYRDDRGRE 349 >gi|307313958|ref|ZP_07593572.1| integrase family protein [Escherichia coli W] gi|33413728|gb|AAN28248.1| Int [Enterobacteria phage WPhi] gi|306906275|gb|EFN36791.1| integrase family protein [Escherichia coli W] gi|315063206|gb|ADT77533.1| integrase [Escherichia coli W] gi|323380729|gb|ADX52997.1| integrase family protein [Escherichia coli KO11] Length = 326 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 42/309 (13%), Positives = 95/309 (30%), Gaps = 27/309 (8%) Query: 26 RKGHGRRIRLPYPHESTF--IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83 R G+RIR + ++ Y A R TL L+ + K H Sbjct: 18 RGRDGKRIRRKFERKAEAVAFERYTIAYASQKE----WAGQRADRRTLSELLDIWWK-YH 72 Query: 84 WGSLAVNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGVESR---KHTPSSAIQFL 137 + ++ F+ +++ GD +++ + + R + ++ + + Sbjct: 73 GQNHEHGTKE-----FNHLLKTISGIGDIPVSRMSKRALMDYRSMRLRDGISAATINRDM 127 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197 + +F ++ + + + P + + ++ + G L Sbjct: 128 YRLSGMFTKLIQLDEFSGQHPIHGLPPLAEANPEMTFLEKAEIEKLLNVLAG-DDLLVAL 186 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI 257 L +G R ++ + N + K G TV ++ K Sbjct: 187 LCLSTGGRWTEVATLKPAQITNCRVTFLKTKNGKKRTVP--------ISEELEKKVKEEA 238 Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317 + K++ +F + N++ H +R A+ G L G ++ Sbjct: 239 SAKLFKVDYEKFCGILRRVKPDIPPNQATHILRHTFASHFMMNGGNIIALQQILGHASIQ 298 Query: 318 QAETYTKGA 326 Q Y A Sbjct: 299 QTMAYAHLA 307 >gi|326797736|ref|YP_004315555.1| integrase family protein [Sphingobacterium sp. 21] gi|326548500|gb|ADZ76885.1| integrase family protein [Sphingobacterium sp. 21] Length = 360 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 39/264 (14%), Positives = 85/264 (32%), Gaps = 16/264 (6%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT----TKHIRSGVESRKHTP 130 + ++ + + ++ ++ F Q++ D + +I + + K + Sbjct: 88 LQRMKEVLQMKAYSPSTIRTYMVEFAQLLYILKDVPIDSLGYDRLRAYILYCINTLKISE 147 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 S L +++ F Q + + RPK+ + + +++++++ Sbjct: 148 SQLHSRLNAIKFYF----EQVLHKPDFFAEIPRPKKPSTLPKVLSQKEVKRIFDAV-RNR 202 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPDGFMKLLAMT 248 + L + GLR S+ V + + + + K V LP + LL Sbjct: 203 KHLLMLQLCYGMGLRVSEVVNLKVSDIDSGRLQVLIEAGKGKKDRYVPLPSAVLDLLREY 262 Query: 249 PIGKETFFI---NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303 + + FK A VNK HG+R AT + G Sbjct: 263 YKAYHPKTYLFEGQYGGRYSVRSVQAVFKNAMKAAKVNKPIGIHGLRHSYATHLLEYGTD 322 Query: 304 AHELMATYGWKTVDQAETYTKGAD 327 + G + Y K + Sbjct: 323 MLFIQQLLGHNDIKTTMLYAKVGN 346 >gi|124514822|gb|EAY56334.1| putative phage integrase [Leptospirillum rubarum] Length = 341 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 45/329 (13%), Positives = 97/329 (29%), Gaps = 24/329 (7%) Query: 16 TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75 R G + RI + A+ + +++ + TTL + Sbjct: 6 KRSGAWRAIVTRKGYDRIT-RTFDTKSEAEAWARDAEAEMDRGVFVSRKEAENTTLSEAL 64 Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSA 133 Y + +++ I K I + R + ++ Sbjct: 65 DRYEREVIPSKKGAVQESMRIRIWNR--SSLAKRFLSSIQGKDIAEYRDRRLKEVAANTV 122 Query: 134 IQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 L + +F AV++ +A +NP + PK R ++ + Sbjct: 123 RHELAVLSHVFTIAVKEWGMAGLVNPVQQIRAPKMPPGRDRRLLPGELDRIIDASGSPVL 182 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLL---- 245 P + L +G+R + + ++ K G V L +++L Sbjct: 183 PDIVRLA-LETGMRQGEIAGMTWDMVDLKKRTVTLLETKNGEKRIVPLSSEAIRILAGLA 241 Query: 246 --AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG--------VNKSAHGVRKFSAT 295 + T + + ++ + G V+ + H +R + + Sbjct: 242 RRIDGKVWGITSHAVAVAFRRAVARARASYEKECEGKGEKPDSAFLVDLTFHDLRHEATS 301 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324 + G E+ A G KT+ + YT Sbjct: 302 RFFEKGFNPMEVSAITGHKTLQMLKRYTH 330 >gi|257790694|ref|YP_003181300.1| integrase family protein [Eggerthella lenta DSM 2243] gi|257474591|gb|ACV54911.1| integrase family protein [Eggerthella lenta DSM 2243] Length = 357 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 45/338 (13%), Positives = 98/338 (28%), Gaps = 37/338 (10%) Query: 17 RHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 ++G + FR G + +T A + ++ T Sbjct: 7 KNGTWLAQFRCKDKFGNEVHKCKRGFATAEEA------QAWEDEFIASAGCTMEMTFGEF 60 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK------ 127 Y L ++ E +++ + +I T I + Sbjct: 61 FKVYEADLRPR-LREHTWRQKEYAIKSRVLPFFANKKMDEIRTIDIVRWQNALMAPDAND 119 Query: 128 HTPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSV-ERPKRKTEGIRPWTKEDMQQFK 183 P SA T + + A R ++ NP + + ++ + WTK++ +F Sbjct: 120 GKPYSATYLRTLNNQLTAILNHAERYYGLSPNPAMRTVKMGGKEARTMNFWTKDEYLRFS 179 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------- 232 + + + FE L ++G+R + +++ K+ Sbjct: 180 DATMDDPRAFVIFEVLYWTGVREGELLALTPDSFDWKKSTMRIDKSYQRLGGRDVITDPK 239 Query: 233 -----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SA 286 TV++ + + ++ S + +GV K Sbjct: 240 TPKSVRTVKMSRFLADEVRDYANHHPEIGEGDRLFPVSKHYISHAMQRGCAASGVKKIRV 299 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R ++ + G TA + G + D Y Sbjct: 300 HDLRHSHVSLLINMGFTALAIADRMGHEATDITFRYAH 337 >gi|226307996|ref|YP_002767956.1| integrase [Rhodococcus erythropolis PR4] gi|226187113|dbj|BAH35217.1| putative integrase [Rhodococcus erythropolis PR4] Length = 374 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 51/366 (13%), Positives = 96/366 (26%), Gaps = 31/366 (8%) Query: 1 MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60 M + + + + G + + A ++ Sbjct: 7 MPAKKGMRGWGRVRLLPSKRYQAAYVGPDGLVHKAHATFTAKLDAEGWLAAERRRIEQGT 66 Query: 61 INSP---RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITT 116 + P T + +R Y D+ I+ + + + Sbjct: 67 WSPPGQRAVAALTFGHYAERWFTETTGRH-KPRTRDLNRGYLDRVILPTFANLELEGLNV 125 Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + +R+ S P+ + +R + A+ E + +NPC + Sbjct: 126 QMVRTWFASLDARPTRNANAYSLLRTILNQALDDELIQVNPCRIKRAAVKVRVVEPIALS 185 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI------------ 224 + S + R +SGLR + + Sbjct: 186 AGEVRALSAAMSIERWRALVLVAGFSGLRWGELAALRRSDVVLTDSECSVTVARAVVRRT 245 Query: 225 ------KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM------NATQFSIW 272 + + + TV LP + L N + Sbjct: 246 GEFVIGRPKSHAALRTVPLPSALREALEDHLELYALPGRNGLVFPSVGGTVAHENVVRPH 305 Query: 273 FKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIR 330 K A K G H +R +AT+ A AGAT + M G + + YT A R R Sbjct: 306 LKKAAAKIGHQSFRFHDLRHTAATMFAQAGATLADHMTLMGHTSAAMSARYTHSTASRNR 365 Query: 331 LGIKNS 336 ++N Sbjct: 366 ELVENM 371 >gi|224282694|ref|ZP_03646016.1| site-specific tyrosine recombinase XerC [Bifidobacterium bifidum NCIMB 41171] Length = 334 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 47/311 (15%), Positives = 93/311 (29%), Gaps = 61/311 (19%) Query: 77 EYRKSAHW-GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGV--ESRKHTP 130 + L+ N+ ++ + + G D R++TT +R + E+R H Sbjct: 9 AFLAYLRANRGLSGNTVKAYGTDVRECLHALASRGIADLRQVTTDDLRGWMAFETRDHAR 68 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG- 189 SS + + S+R F WA + +P + PK T+ ++ + Sbjct: 69 SSMARKVVSVRSFFAWAHEHGRIEADPAAVLMTPKLPDTLPSVLTEAQAERLMDRVDDDA 128 Query: 190 -------------------------------------SQPRLAFEFLLYSGLRCSDSCRA 212 + E L +G+R ++ Sbjct: 129 SLHAASSQRYETRHDEMPRLDSAHRGEGMSQRDEVVALRDAAMLELLYATGIRVAELVGL 188 Query: 213 GVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFIN------------- 258 + + + +I+ V D K LA + Sbjct: 189 DIGDVDWSHRTIRVTGKGSKQRVVPFGDPAEKALAGWKEHGRPLILRRAGAGTLDTAALF 248 Query: 259 --NDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKT 315 ++++ A ++GV S H +R +AT D GA E+ G + Sbjct: 249 LGMRGRRIDQRIVRDVVHRAARESGVPDISPHSLRHSAATHMLDGGADLREVQEMLGHSS 308 Query: 316 VDQAETYTKGA 326 + + YT + Sbjct: 309 LRTTQRYTHVS 319 >gi|218263976|ref|ZP_03477907.1| hypothetical protein PRABACTJOHN_03597 [Parabacteroides johnsonii DSM 18315] gi|218222387|gb|EEC95037.1| hypothetical protein PRABACTJOHN_03597 [Parabacteroides johnsonii DSM 18315] Length = 382 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 55/376 (14%), Positives = 120/376 (31%), Gaps = 47/376 (12%) Query: 11 VTKERTRHGKIIYYFR-KGHGRR---------IRLPYPHESTFIPAYMSA--------LT 52 + R G Y G+R I P A M+ + Sbjct: 5 IRTRTLRTGSRSIYLDFYDKGKRWNEYLNLFLIPDDEPDAKRLNEAAMAKANTIKSKRML 64 Query: 53 GSTPKREYINSPRKKPTTLKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKS----- 106 G + ++++ + S A ++ ++ S + I Sbjct: 65 GIEEETNDDEQSELPKRVFADWLADHIEGIRRNPSYAASTYRNYRSTVNVIKAYLQHLRR 124 Query: 107 --------------GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY 152 G D+ + T ++ +S ++ +P + + +++ + AV++ Sbjct: 125 QRLLMSKIDKGFVLGFIDFIEHTYRNTKSPDNPKEMSPHTLHLYQSTLVRMLNAAVKEGV 184 Query: 153 VAINPC---LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209 + NP +R ++ TKE++ F + + AF F ++GLR SD Sbjct: 185 LDRNPFYSLERKDRIGKQQAEKEYLTKEELMAFAEAPTVNETTKRAFLFCCFTGLRYSDV 244 Query: 210 CRAGVQHLQN--NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT 267 + ++ N + + + + +++ P + Sbjct: 245 SALTWRDIRQGDNGWMVSVKAMQKTGKQVVIPLNQSAISLLPDRNGCKPSQKVFDMTCLS 304 Query: 268 QFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 + K A AG+ K S H R A ++ AG + + G +++ + Y Sbjct: 305 SCNKCLKKIAAAAGIEKKISYHTSRHTFAVLALAAGGDIYTVGKLLGHTSINSTQVYADA 364 Query: 326 ADRIRLGIKNSRRISS 341 + ++ RISS Sbjct: 365 VMETK--VEAISRISS 378 >gi|284006802|emb|CBA72070.1| phage integrase [Arsenophonus nasoniae] gi|284009416|emb|CBA76618.1| phage integrase [Arsenophonus nasoniae] Length = 387 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 57/380 (15%), Positives = 114/380 (30%), Gaps = 58/380 (15%) Query: 15 RTRHGKIIYYFRKGHGRRIRLP-YPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 R G +F +G+R+R + L + + + T + Sbjct: 4 TLRGGIWHCHFFTPNGKRVRRSLGTSDKKQAQELHDKLKAEAWRVDEL--GELPIRTFEE 61 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT------------------ 115 + S + D +++ D IT Sbjct: 62 ACLRWLDEKGHK----RSLDDDKVKIDFFLQQLAGRDIASITGDEVHNIVGKMINRNHRR 117 Query: 116 TKHIRSG-----------VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164 IR + R + + +L MR L + A ++ + ++ Sbjct: 118 RWEIRRDAAIRDGKTIPAYKERPVSVGTKSHYLGFMRSLLR-AAANDWGWMKTAPVIKTN 176 Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 K ++ IR T+E+ + E +P + F L +GLR S+ + Sbjct: 177 KPVSKRIRWLTREEANRLIDCMPESIKPVVIFA--LSTGLRRSNIIDLEWSQVDMQRKVA 234 Query: 225 KTQKTG----TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF-SIWFKAKA-- 277 I V L D K+L + + K A + + Sbjct: 235 WINPENAKAGKAIGVALNDTACKVLKGQIGKHSRWVFVHTKAANRADGTKTPAIRKMRVD 294 Query: 278 ---------TKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 +AG++ H +R A+ +G L GW++++ Y A Sbjct: 295 DNTGWLLGLKRAGIDNFRFHDLRHTWASWLIQSGVPLSALQEMGGWESIEMVRRYAHLAP 354 Query: 328 RIRLGIKNSRRISSVVDSDD 347 +++++I S++D +D Sbjct: 355 NH--LTEHAKKIDSLLDGND 372 >gi|163753743|ref|ZP_02160866.1| tyrosine type site-specific recombinase [Kordia algicida OT-1] gi|161325957|gb|EDP97283.1| tyrosine type site-specific recombinase [Kordia algicida OT-1] Length = 428 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 36/257 (14%), Positives = 84/257 (32%), Gaps = 16/257 (6%) Query: 82 AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFL 137 + ++ ++S+ ++ ++IT + IR+ + + R+ + S Q + Sbjct: 161 LKALRYSESTIKIYKSFLSIFFTYHYAYEPQEITNEMIRTYMRYLVQEREISESYQNQMI 220 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197 +++ + + ++RPKR ++++ Q + + Sbjct: 221 NAIK----FYYEKVLGGKQQTYFIDRPKRSKPLPIVLSQKETIQLLKSI-PNLKHKTILT 275 Query: 198 FLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVE---LPDGFMKLLAMTPIGK 252 + GLR S+ + + N I K V +K+ + Sbjct: 276 VIYSCGLRVSELIDLKLSSIYLEENKIHIVAGKGKKDRYVTLAVRTKKLIKIYIKKYAPE 335 Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMAT 310 K + + K + +AG+ K + H +R AT + G + + Sbjct: 336 HYLIEGQKGGKYATSSIQKFIKKYSNEAGLTKNVTPHTLRHSFATHLLEKGISLRYIQYI 395 Query: 311 YGWKTVDQAETYTKGAD 327 G + E YT Sbjct: 396 LGHQNSKTTEIYTHITQ 412 >gi|168208118|ref|ZP_02634123.1| site-specific recombinase, phage integrase family protein [Clostridium perfringens E str. JGS1987] gi|170660597|gb|EDT13280.1| site-specific recombinase, phage integrase family protein [Clostridium perfringens E str. JGS1987] Length = 312 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 47/280 (16%), Positives = 97/280 (34%), Gaps = 11/280 (3%) Query: 56 PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115 KR + + + L+ EY ++++ ++E+ F + I GD +I Sbjct: 3 RKRIVKKTIEQFDMKISELLEEYITELQVNQCSIHTIKTYETAFKRFICDEGDLRLSEIN 62 Query: 116 TKHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 TK I + K +P + +++ +R +F +A +QEY+ ++ ++ Sbjct: 63 TKVINHFKNNLKDKVSPRTINTYISHLRAVFNYAYKQEYMDKLEIKLIKVQQKVKYVPTD 122 Query: 174 WTKED-MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 E + + + RLA + +G+RC + + + S K + Sbjct: 123 EEIEILLSEGRKETYSNYVCRLACMVMCTTGIRCLEFLSLNIGNFTKEYISTNHTKNRML 182 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKA-KATKAGVNK 284 + +P+ K + +D ++ F F+ K G Sbjct: 183 RYLPIPNLVSKEIRSYIKNYRKDAKQDDPLFVSVYLRRYTDKGFRKSFRDFAKKKIGHEI 242 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R++ T S + A L G Y K Sbjct: 243 GTHCLRRYFITKSLNNNANPILLAKITGHHDTRMFNYYYK 282 >gi|238020532|ref|ZP_04600958.1| hypothetical protein GCWU000324_00418 [Kingella oralis ATCC 51147] gi|237867512|gb|EEP68518.1| hypothetical protein GCWU000324_00418 [Kingella oralis ATCC 51147] Length = 294 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 40/262 (15%), Positives = 82/262 (31%), Gaps = 15/262 (5%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVESRKHTPSSAIQF 136 Y + + ++ I++E ++ + + + R P+S + Sbjct: 11 YLTEQRQRNRSPHTLIAYERELRELANLLPATAQPARRDFQAAFRQLSQRGLHPASLARA 70 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-----PWTKEDMQQFKSFWSEGSQ 191 L++ R + VRQ + NP ++ K+ R Q +S + + Sbjct: 71 LSAWRQYCDYLVRQGSLKTNPVQDIKALKKPQRLPRAIERDTLNALLDQPAESDDTLALR 130 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMTPI 250 + E L SGLR ++ + + + K V L + LL Sbjct: 131 DQAIAELLYGSGLRLAELAGLNLADVYLDAGWLNVHGKGSKQRQVPLTQSSVALLQQWLA 190 Query: 251 GKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302 + ++ + Q + A + G + S H +R A A Sbjct: 191 QRPAQPHETALFTTQHGTRLGSRQIAKRLDNWAQQHGSPQHISPHMLRHSFAGHLLQASR 250 Query: 303 TAHELMATYGWKTVDQAETYTK 324 + G ++ + YTK Sbjct: 251 DIRAVQDLLGHASLSSTQIYTK 272 >gi|291288556|ref|YP_003505372.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809] gi|290885716|gb|ADD69416.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809] Length = 386 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 46/298 (15%), Positives = 97/298 (32%), Gaps = 26/298 (8%) Query: 56 PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFES-YFDQIIRKSGDFDYRKI 114 +E + R T L E+ +A N+R + S + + I G I Sbjct: 73 KPKEELEVDRFLTATFDVLYLEWIDHK--THIAKNTRRTMLSFHRNHISPYIGHKLLGDI 130 Query: 115 TTKHIRSGV--ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 T K IR + S+ + + L S+R F V + ++ +P V+ + + I+ Sbjct: 131 TEKDIRMMMTVMSKVNRNVVVNRKLRSVRSFFNEVVEEGHLKESPFKKVKYLRNEKVDIK 190 Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLL-YSGLRCSDSCRAGVQHLQNNIFSI------- 224 P+ +E++ + ++E +F L +SG R ++ + I Sbjct: 191 PFNQEELARLLVGFAEKYPAYESFVAFLAFSGCRPNEVVGLKWDKIDWENRKILIREGFV 250 Query: 225 ----KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT----QFSIWFKAK 276 KT + + +++L + + K + N F + Sbjct: 251 LGEETLLKTDSSVRDIDMTEPLEVLLLQQLDKGIDSEYVFVNEFNRRICWENFRQKYHRV 310 Query: 277 ATKAGVNKSA-HGVRKFSATISADAGATAHELMATYGWKTVDQAE----TYTKGADRI 329 + + +R A+++ G + G + Y +R Sbjct: 311 LKLKNIVSRPAYQLRHTFASMAIKNGEDILWVSRMLGHSNLKTTLTTYTRYIPSLERK 368 >gi|194438148|ref|ZP_03070240.1| site-specific recombinase, phage integrase family [Escherichia coli 101-1] gi|194422812|gb|EDX38807.1| site-specific recombinase, phage integrase family [Escherichia coli 101-1] Length = 387 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 52/371 (14%), Positives = 105/371 (28%), Gaps = 60/371 (16%) Query: 21 IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK 80 F +G+R + A T + + + Sbjct: 10 WYASFTLPNGKRFKQSL-GTKDKRQATELHDKLKAEAWRVSKLGEIPDMTFEEACVRWLE 68 Query: 81 SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---------- 130 S +S ++ R IT I S ++ + Sbjct: 69 EKAHKK----SLDDDKSRIGFWLQHFAGMQLRDITESKIYSAMQKMTNRRHEENWKLRAE 124 Query: 131 -------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 ++ L+ ++ L + A +E+ ++ ++ P+ K + I Sbjct: 125 ACRKKGKPVPEYTPKPASVATKATHLSFIKALLR-AAEREWKMLDKAPIIKVPQPKNKRI 183 Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQ 227 R + Q+ E + EF L +GLR S+ Q + + + Sbjct: 184 RWLEPHEAQRLIDECPEPLKS--VVEFALATGLRRSNIINLEWQQIDMQRRVAWINPEES 241 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------------FSIWFKA 275 K+ I V L D ++L + + + +KA Sbjct: 242 KSNRAIGVALNDTACRVLKKQIGNHHRWVFVYKESCTKPDGTKAPTVRKMRYDANTAWKA 301 Query: 276 KATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334 +AG++ H +R A+ AG L GW++++ Y L Sbjct: 302 ALRRAGIDDFRFHDLRHTWASWLVQAGVPLSVLQEMGGWESIEMVRRYAH------LAPN 355 Query: 335 NSRRISSVVDS 345 + + +DS Sbjct: 356 HLTEHARQIDS 366 >gi|325499381|gb|EGC97240.1| hypothetical protein ECD227_3478 [Escherichia fergusonii ECD227] Length = 326 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 41/307 (13%), Positives = 96/307 (31%), Gaps = 23/307 (7%) Query: 26 RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85 R G+RIR A+ + ++E+ R TL L+ + K H Sbjct: 18 RGRDGKRIR-RKFERKAEALAFERYTIANASQKEWGGQ-RADRRTLSELLDIWWK-YHGQ 74 Query: 86 SLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTS 139 + ++ F+ +++ GD +++ + + R + ++ + + Sbjct: 75 NHEHGTKE-----FNHLLKTISGIGDIPVSRMSKRALMDYRSMRLRDGISAATINRDMYR 129 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199 + +F ++ + + + P + + ++ + G L Sbjct: 130 LSGMFTKLIQLDEFSGQHPIHGLPPLAEATPEMTFLEKAEIEKLLNVLAG-DDLLVALLC 188 Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259 L +G R ++ + N + K G V ++ K + Sbjct: 189 LSTGGRWTEVATLKPAQITNCRVTFLKTKNGKKRIVP--------ISEELEKKVKEEASA 240 Query: 260 DKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 K++ +F + N++ H +R A+ G L G ++ Q Sbjct: 241 KLFKVDYEKFCGILRRVKPDIPPNQATHILRHTFASHFMMNGGNIIALQQILGHASIQQT 300 Query: 320 ETYTKGA 326 Y A Sbjct: 301 MAYAHLA 307 >gi|295087392|emb|CBK68915.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A] Length = 382 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 40/283 (14%), Positives = 93/283 (32%), Gaps = 27/283 (9%) Query: 72 KWLISEYRKSAHW------GSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHI 119 + L +R+ +A + +E+ D +++ + I Sbjct: 84 RTLFEVFREHNDKCVQLSGTDMAPATVQRYETSLKHTRDFVWETYHKKDVLLDEVSRQFI 143 Query: 120 RSGVESRK----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 K ++A ++L + + + + A+ + ++ +P L + Sbjct: 144 EDYEFWLKTEKKCCHNTATKYLKNFKKIIRIALAKGWMKNDPFLEIRF-SLDKVEPDFLE 202 Query: 176 KEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 ++Q+ S + + R F F ++GL SD +H+ + ++ + G Sbjct: 203 DSEIQKLISKEIDIPRLSQVRDIFVFCCFTGLAFSDIHGLRKEHIVEDSNGVRWIRKGRQ 262 Query: 233 ITVELPDGFM-----KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA- 286 T + + + K+L + + + + + K A G+ K+ Sbjct: 263 KTKIMCNIPLMEIPLKILEKYSTNEYCKKHGVLFPVLCNQKMNAYLKELADICGIKKTLT 322 Query: 287 -HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 H R AT + G + + G V Y + DR Sbjct: 323 THVGRHTFATFALANGVSIESVAKMLGHTNVQMTRHYARVLDR 365 >gi|227539590|ref|ZP_03969639.1| tyrosine recombinase XerC [Sphingobacterium spiritivorum ATCC 33300] gi|227240503|gb|EEI90518.1| tyrosine recombinase XerC [Sphingobacterium spiritivorum ATCC 33300] Length = 293 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 36/280 (12%), Positives = 85/280 (30%), Gaps = 25/280 (8%) Query: 76 SEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHTPSS 132 + + + ++ ++ + D + + IR + Sbjct: 4 QRFLNFLRFEKRYSNHTIEAYTHELNVFFTFLQDQGVPEEEADHRVIRLYLSHLMEEGRQ 63 Query: 133 A---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--- 186 A + ++++R +K+ R+ NP ++ K + K+ M Sbjct: 64 ATSVNRSISALRTYYKFLQRESLTDQNPLTLIKALKTPKKLPSVMEKDKMVGLLDQMEGA 123 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFM 242 + L E L +G+R ++ + + + +I K V + + Sbjct: 124 VDSFTDERDYLVLELLFGTGIRLTELLQIKITDIDFYNKNILILGKRNKERLVPVNHTLL 183 Query: 243 KLLAMTPIGKETFFINNDK---------QKMNATQFSIWFKAKATKA--GVNKSAHGVRK 291 + L + + I+N ++ + KS H +R Sbjct: 184 EKLKIYIQQLDNQKIDNKTAFLIVTKEGKQAYPKMIYRIVHRYLSLISTQRKKSPHVLRH 243 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330 AT D GA + + G + + YT +R++ Sbjct: 244 TFATALLDNGADLNAIKELLGHAGLAATQVYTHNSVERLK 283 >gi|30065733|ref|NP_839878.1| Int [Yersinia phage L-413C] gi|293417378|ref|ZP_06660002.1| phage integrase family site-specific recombinase [Escherichia coli B185] gi|30025927|gb|AAP04466.1| Int [Yersinia phage L-413C] gi|291430898|gb|EFF03894.1| phage integrase family site-specific recombinase [Escherichia coli B185] Length = 326 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 42/307 (13%), Positives = 97/307 (31%), Gaps = 23/307 (7%) Query: 26 RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85 R G+RIR A+ + ++E+ R TL L+ + K H Sbjct: 18 RGRDGKRIR-RKFERKAEALAFERYTIANASQKEWGGQ-RADRRTLSELLDIWWK-YHGQ 74 Query: 86 SLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTS 139 + ++ F+ +++ GD +++ + + R + ++ + + Sbjct: 75 NHEHGTKE-----FNHLLKTISGIGDIPVSRMSKRALMDYRSIRLRDGISAATINRDMYR 129 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199 + +F ++ + + + P + + ++ + G L Sbjct: 130 LSGMFTKLIQLDEFSGQHPIHGLPPLAEANPEMTFLEKAEIEKLLNVLAG-DDLLVALLC 188 Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259 L +G R ++ + N + K G TV ++ K + Sbjct: 189 LSTGGRWTEVATLKPAQITNCRVTFLKTKNGKKRTVP--------ISEELEKKVKEEASA 240 Query: 260 DKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 K++ +F + N++ H +R A+ G L G ++ Q Sbjct: 241 KLFKVDYEKFCGILRRVKPDIPPNQATHILRHTFASHFMMNGGNIIALQQILGHASIQQT 300 Query: 320 ETYTKGA 326 Y A Sbjct: 301 MAYAHLA 307 >gi|45358306|ref|NP_987863.1| integrase/recombinase [Methanococcus maripaludis S2] gi|44921064|emb|CAF30299.1| Probable integrase/recombinase [Methanococcus maripaludis S2] Length = 324 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 40/321 (12%), Positives = 98/321 (30%), Gaps = 35/321 (10%) Query: 54 STPKREYINSPRKKPTTLKW---LISEYRKSAHWGSLAVNSRISFESYFD---QIIRKSG 107 K+ + T + I ++++ + ++ ++ + + + G Sbjct: 3 ELEKKLLYGTKSDPAVTTEEQNIYIKKFQEEREFDNIKPSTIKNDVTSLKVFLAFCEEIG 62 Query: 108 DFDYRKITTKHIRSGV---ESRKHTPSSAIQFLTSMRVLFKW-------AVRQEYVAINP 157 Y T + R T + ++ ++V ++ +E + Sbjct: 63 KEPYSLTTHDFVIFFNMLNNRRNCTVRTQNRYFNLLKVFYRLLKYVNFKEFERESIERKR 122 Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD--SCRAGVQ 215 E+ T + + + S + L L +G R S+ S R Sbjct: 123 FSKFEKKHYDTINFDTYNRIIKEIILSNSRTRLRDALIVRVLWETGCRRSEALSIRYKDC 182 Query: 216 HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT---------PIGKETFFINNDKQKMNA 266 + F I+ KT TV + + ++++ + + +++ Sbjct: 183 DFEKGRFRIRDTKTYEERTVVIAEETVEIVRDYIKENIKRDSNDYIFQNEMIQNGKRVKL 242 Query: 267 TQFSIWFKAKATKA--------GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 + FK K G H +R AT D G + G ++++ Sbjct: 243 DWITNVFKKAVRKLKEEGVIPEGKRIVIHSLRHGRATDLLDKGVPIDVVKEILGHRSLET 302 Query: 319 AETYTKGADRIRLGIKNSRRI 339 Y+ +R + N +++ Sbjct: 303 TLYYSHSKERKNGMLDNIQKL 323 >gi|148252808|ref|YP_001237393.1| putative phage related integrase [Bradyrhizobium sp. BTAi1] gi|146404981|gb|ABQ33487.1| putative phage related integrase [Bradyrhizobium sp. BTAi1] Length = 434 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 40/348 (11%), Positives = 90/348 (25%), Gaps = 44/348 (12%) Query: 21 IIYYFRKG-HGRRIRLPY--PHESTF--IPAYMSALT-----GSTPKREYINSPRKKPTT 70 +R G GRR+ F A +A ++ T Sbjct: 42 WFIEYRPGAGGRRVAKRRYYFGSREFTPEQARQTAKELLANVALGGDPMKDRLHERQSLT 101 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSGVESRKHT 129 Y L + ++ + + G KI+ + T Sbjct: 102 FSEFAERYLSEEAEPKLKPGTVANYRIAVRRHANPEIGKLKLHKISNADLARLHTKIGKT 161 Query: 130 PSS-AIQFLTSMRVLFKW--AVRQEYVAINPCLSVERPKRKTEGI--------------- 171 + A + L + +F++ V NP + + Sbjct: 162 STVNANRTLECVSSIFRYAVTCDIVPVGHNPTKGIRAFRENRRERFLNSDELARLGSAIR 221 Query: 172 --------------RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217 +P +K + S A L+ +G R + ++ Sbjct: 222 EAETVGIPYEIDETKPTSKHAPKPENRRTKIDSYTAAALRLLILTGARLREILHLKWDYV 281 Query: 218 QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277 + + T + + + + K + I ++++ + ++ + Sbjct: 282 DFERGLLLLPDSKTGRKAIVLNVPALAVLSSLDRKGQYVIFSEQEDKPRADLNRPWRTIS 341 Query: 278 TKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +A + H +R A++ A AG + G + Y Sbjct: 342 ARAKLQGVRLHDLRHTHASVGAGAGLGLPIIGKLLGHTQASTTQRYAH 389 >gi|320006222|gb|ADW01252.1| phage integrase [Lactobacillus phage LF1] Length = 362 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 41/337 (12%), Positives = 99/337 (29%), Gaps = 35/337 (10%) Query: 14 ERTRHGKII----YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 R GK +Y G R + + + K + K Sbjct: 4 YVKRSGKWQARISWYDTAGKRRFKNKGGFTTKSLAKKWAVENEANLAKGILTD----KEI 59 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK-- 127 T + ++ + +A + + +++ R R++T + + Sbjct: 60 TFADYVDQWVTTYKEPKVAKITLDRYHYTANEVRRFFKLTPIRQVTRTMYQEFINDYGSC 119 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR--PWTKEDMQQFKSF 185 H P + + + +R K A+ +Y+ + VE K+ I+ K ++ + Sbjct: 120 HAPPTVKKVNSYIRSAVKSAILDDYLIKDFTQGVELNSDKSRSIKVDYLNKAEIHRLIQH 179 Query: 186 WSEGSQPRLAFEFL----LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----------- 230 G R + +Y+G+R ++ + +I K+ Sbjct: 180 AEAGLTRRYTSRHMIVTAIYTGMRLAEIQALTWSDIDWIKSTITINKSWDAHTRQFKPTK 239 Query: 231 ---TIITVELPDGFMKLLA--MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 + +++ + LL T F+ + + + G+N+ Sbjct: 240 TESSNRVIKVNRHLLALLRGLRTHSKSNMVFLTQFGTIPTSNAVNKTLRTLLADLGINRQ 299 Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 H +R + +G + + G + Sbjct: 300 NFHFHSLRHSHVALLLASGIDLYAISKRLGHSSTVIT 336 >gi|317055373|ref|YP_004103840.1| integrase family protein [Ruminococcus albus 7] gi|315447642|gb|ADU21206.1| integrase family protein [Ruminococcus albus 7] Length = 396 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 48/349 (13%), Positives = 99/349 (28%), Gaps = 45/349 (12%) Query: 33 IRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSR 92 P P + + + K + ++ + +L + Sbjct: 31 TWKPEPKMTAKQIEKELNRQAVMFEEACNKGYQSKAIKFEVFAEQWFEEYAKPNLRNTTY 90 Query: 93 ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-----------TPSSAIQFLTSMR 141 ++ G KIT + I++ V S P + L+ + Sbjct: 91 ERMLQLRKRVYAAIGHLRMDKITPRQIQAFVNSLSKEGANERTGKPLAPKTIRHNLSFVS 150 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-WSEGSQPRLAFEFLL 200 +F + V+ ++ NPC V PK + + +T E +Q+F S E + R F ++ Sbjct: 151 DVFAYGVKMGVISDNPCAKVTLPKNEQTEKKIYTPEQVQRFLSLLNDEPLKYRTFFNLMI 210 Query: 201 YSGLRCSDSCRAGVQHLQNNIFSI-------------KTQKTGTIITVELPDGFMKLLAM 247 YSG R + + + I T + F + + Sbjct: 211 YSGFRRGEMLGLEWKDVDFENNIISVRRTSNYTAKKGVYTDTTKTRKSQRTLKFPQAIMD 270 Query: 248 T------------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHG 288 + + ++ + + M W K + H Sbjct: 271 MLREYKAEQDEQALKCGDKWVETDRLYVKWNGEPMQNGTPYFWLGEFCEKHDLPFYGLHS 330 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNS 336 R A++ + G + G TV Y + R + ++ Sbjct: 331 FRHLFASLLVNQGVDIVTVSGALGHSTVSTTSNIYCHMLEESRAKVSDA 379 >gi|282904692|ref|ZP_06312567.1| integrase [Staphylococcus aureus subsp. aureus C160] gi|282906371|ref|ZP_06314223.1| integrase [Staphylococcus aureus subsp. aureus Btn1260] gi|283958805|ref|ZP_06376251.1| integrase [Staphylococcus aureus subsp. aureus A017934/97] gi|295428615|ref|ZP_06821242.1| hypothetical protein SIAG_02387 [Staphylococcus aureus subsp. aureus EMRSA16] gi|116282493|gb|ABJ97306.1| integrase [Staphylococcus aureus] gi|282330568|gb|EFB60085.1| integrase [Staphylococcus aureus subsp. aureus Btn1260] gi|282594941|gb|EFB99917.1| integrase [Staphylococcus aureus subsp. aureus C160] gi|283789845|gb|EFC28667.1| integrase [Staphylococcus aureus subsp. aureus A017934/97] gi|295127597|gb|EFG57236.1| hypothetical protein SIAG_02387 [Staphylococcus aureus subsp. aureus EMRSA16] Length = 390 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 51/387 (13%), Positives = 106/387 (27%), Gaps = 56/387 (14%) Query: 14 ERTRHGKIIYYFRKGH----GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 R Y G G+ + A A R + + Sbjct: 4 YEKRGNTWRYRISLGKDAETGKYKYISNSGFKRKSDAKHHAEMVERQLRN-GDYIAPSTS 62 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--K 127 T K + ++ S + + V+S + E + I + + + I + V + Sbjct: 63 TFKQVADDWI-SQYANEVKVSSVRAREKAINHAIERFNNKPIQTINKHEYQRFVNDISAQ 121 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---- 183 ++ + + S ++FK+A + + I P ++RPK+K E ++F Sbjct: 122 YSKNYVDSIIASTNMIFKYAYDMKLIRIMPSEGIKRPKKKISVEELEDTEIHKKFLEKDE 181 Query: 184 --------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI----------- 224 F L Y+G+R + + +I Sbjct: 182 LFQFLEVAKNHHSPQNSFEVFCTLAYTGMRAGELLALKWSDIDFENNTINITKTYYNPNN 241 Query: 225 --------------------KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264 ++ D + F + + + Sbjct: 242 NKKQFQILTPKTESSIGKISVDPHVIKLLKNYKTDVQDTWKNELYVDNNFVFTDVNGYPL 301 Query: 265 NATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE- 320 + +W KA K + S H R + +AG E+ K ++ Sbjct: 302 VIKKLQLWIKAILKKTDITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMN 361 Query: 321 TYTKGADR-IRLGIKNSRRISSVVDSD 346 Y K + + + ++ V D Sbjct: 362 IYAKITNSYKKDASQKFSKLMENVSKD 388 >gi|148260195|ref|YP_001234322.1| site-specific tyrosine recombinase XerC [Acidiphilium cryptum JF-5] gi|146401876|gb|ABQ30403.1| phage integrase family protein [Acidiphilium cryptum JF-5] Length = 313 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 35/276 (12%), Positives = 77/276 (27%), Gaps = 28/276 (10%) Query: 85 GSLAVNSRISFESYFDQII----RKSGDFD----YRKITTKHIRSGVESRKHTP---SSA 133 A + ++ + + + R G ++ R+ + ++ Sbjct: 28 RRAAALTVSTYGADLAEFLGFVTRHIGAEPTGADLAALSLADFRAWLAKAASDGVGNATR 87 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-QP 192 + L+++R F+W ++ + + PK + R T D + + P Sbjct: 88 AKKLSAVRSFFRWLRQRHGMINEAPGLLRTPKSRRPLPRALTAPDAAAVVDSLGDDAASP 147 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252 LA L R N ++ + LL + Sbjct: 148 ALAARDTALMALLYGAGLRIHEALGLNIGDLPPEGAPLSVRGKGGRQRIVPLLPVLRREI 207 Query: 253 ETFFINNDKQ-------------KMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATIS 297 ++ ++ ++N + G+ + H +R AT Sbjct: 208 ASWLRHHPAPTPDAPLFLGARGARLNPGVVQRRLRDFRRLNGLPEHATPHALRHSFATHL 267 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 GA + G ++ + YT D RL Sbjct: 268 LANGADLRAIQELLGHASLSTTQRYT-AVDADRLMA 302 >gi|314939350|ref|ZP_07846593.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133a04] gi|314941881|ref|ZP_07848746.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133C] gi|314994173|ref|ZP_07859479.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133B] gi|314997838|ref|ZP_07862745.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133a01] gi|313588142|gb|EFR66987.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133a01] gi|313591408|gb|EFR70253.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133B] gi|313599328|gb|EFR78173.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133C] gi|313641359|gb|EFS05939.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133a04] Length = 329 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 48/300 (16%), Positives = 99/300 (33%), Gaps = 41/300 (13%) Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK 127 TT + L + + + +S + + I+ G+ KI+ + + V Sbjct: 16 TTFQELYELWIDNYRTR-VKPSSVAVAQRFCKNHILPAFGELRLDKISVSYCQKQVNEWH 74 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT--EGIRPWTKEDMQQFKSF 185 T + +FK+ V E NP P++ + ++ +TK+ +Q F Sbjct: 75 KTLKQYGFLRKTTAQIFKFGVAMEVCKDNPMSKTLLPRKIEEEQPLKFYTKDQLQLFLQN 134 Query: 186 WSEGSQPRLAFEFLL--YSGLRCSDSCRAGVQHLQNNIFS-----------------IKT 226 E + +L F L Y+G+R S++ + + + Sbjct: 135 TKENNSVKLYTFFRLLAYTGMRKSEALALQWEDIDYFNKTITIGKTIAQDEFNQVVLQVP 194 Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF---------------SI 271 + + T++L D +K L + + I + QF + Sbjct: 195 KTKNSSRTIQLDDFTLKQLRIWQQEQMKIMILYGYNTNSPKQFLFTTNTNKLYYPQVVND 254 Query: 272 WFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADR 328 W K + + HG R ++ ++GA+ E+ G K + Y + Sbjct: 255 WLDWIYKKTPMEPQITPHGFRHTHCSLLFESGASIKEVQERLGHKDIKTTMNIYAHVTPQ 314 >gi|149916304|ref|ZP_01904824.1| site-specific recombinase, phage integrase family protein [Roseobacter sp. AzwK-3b] gi|149809758|gb|EDM69610.1| site-specific recombinase, phage integrase family protein [Roseobacter sp. AzwK-3b] Length = 363 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 53/331 (16%), Positives = 106/331 (32%), Gaps = 33/331 (9%) Query: 27 KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN----SPRKKPTTLKWLISE----Y 78 G R I+L E + A L + + + TL + + Sbjct: 23 DGKMRVIKLGRFPEISTERARALCLEHKQRISQGATVDDLTKPVRSMTLDQFYRDHFLPW 82 Query: 79 RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS---GVESRKHTPSSAIQ 135 ++ + + N + S + I G I +R ++ + P S + Sbjct: 83 YQT--YRRNSTNIVQLYRSTY-HIR--YGHRHLHTICQDDLRKLTKEMQDLGYAPGSVNR 137 Query: 136 FLTSMRVLFKWAVRQ--EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE--GSQ 191 + +R + + A + + R ++E+ Q+ ++ + Sbjct: 138 TVVILRGMLRRADDWGYCKIHSSLQKPPNLLPDHPRHERFLSREEAQRLQAVLQRRGATP 197 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPDGFMKLLAMTP 249 LA FLLY+G R S+ A H+ + K G TV L D + +L Sbjct: 198 VNLAILFLLYTGARRSEVLNADWAHVDFARQEWRIPISKNGRPRTVILSDRAVDILEQAR 257 Query: 250 IGKETFF----------INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISA 298 ++ F N + + +K +A + + H +R A+ Sbjct: 258 AYQQRHFVKQARSVSTVFANPQTRQPYHNIWETWKRVRAEADLTDVRLHDLRHSYASTLI 317 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRI 329 +AG + +E+ G + + Y A Sbjct: 318 NAGVSIYEVQKLLGHTNITTTQRYAHLASER 348 >gi|323945396|gb|EGB41450.1| phage integrase [Escherichia coli H120] Length = 387 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 54/376 (14%), Positives = 108/376 (28%), Gaps = 61/376 (16%) Query: 17 RHGK-IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75 R G+ F +G+R + A T + Sbjct: 5 RRGEIWYASFTLPNGKRFKQSL-GTKDKRQATELHDKLKAEAWRVSKLGEIPDITFEEAC 63 Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP----- 130 + + S +S ++ R IT I S ++ + Sbjct: 64 VRWLEEKAHKK----SLDDDKSRIGFWLQHFAGMQLRDITESKIYSAMQKMTNRRHEENW 119 Query: 131 ------------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 ++ L+ ++ L + A +E+ ++ ++ P+ Sbjct: 120 RLRAEACRKKGKPVPEYTPKPASVATKATHLSFIKALLR-AAEREWKMLDKAPIIKVPQP 178 Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IF 222 K + IR + Q+ E + EF L +GLR S+ Q + Sbjct: 179 KNKRIRWLEPHEAQRLIDECPEPLKS--VVEFALATGLRRSNIINLEWQQIDMQRRVAWI 236 Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------------FS 270 + + K+ I V L D ++L + + + Sbjct: 237 NPEESKSNRAIGVALNDTACRVLKKQIGNHHRWVFVYKESCTKPDGTKAPTVRKMRYDAN 296 Query: 271 IWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +KA +AG++ H +R A+ AG L GW++++ Y Sbjct: 297 TAWKAALRRAGIDDFRFHDLRHTWASWLVQAGVPLSVLQEMGGWESIEMVRRYAH----- 351 Query: 330 RLGIKNSRRISSVVDS 345 L + + +DS Sbjct: 352 -LAPNHLTEHARQIDS 366 >gi|239630751|ref|ZP_04673782.1| site-specific recombinase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239527034|gb|EEQ66035.1| site-specific recombinase [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 385 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 51/379 (13%), Positives = 112/379 (29%), Gaps = 52/379 (13%) Query: 11 VTKERTRHGKIIYYFRK-------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63 + K T+ GK + + ++ ++ ++ +A + + Sbjct: 4 IKKYATKDGKEFWRVQVFAGNDPQTGHKKYKVRRGFKTKKEATVAAARLELAISNGDLEN 63 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSG 122 + P + + E+ + ++ ++ F + I+ G ITTK ++ Sbjct: 64 EKPTPVFFRDVYEEWYGNY-INTVRESTWARTAGMFNNHILPAFGGKRIATITTKDVQKA 122 Query: 123 VESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK----TEGIRPWTKE 177 V+ + T ++ ++ + + +AVRQ Y+ NP +V P + WTKE Sbjct: 123 VKRWFEFTSANYKRWYNYVSSVMDYAVRQGYMDKNPAKAVVLPHHDDLAGDKPENFWTKE 182 Query: 178 DMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQN---------------- 219 M +F + + + + F L ++G+R + + Sbjct: 183 QMNRFFACIDQANHFDIFIMFRVLAFTGVRRGELLALTWNDVSFKENSIKVNKTLTQGDK 242 Query: 220 -NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF--------- 269 + + T+ + M L ++ F+ M Q Sbjct: 243 GHQIVQAPKTRAGRRTIPVDGQTMAYLKRWRRIQQETFLQLGINTMQPNQLLFTNTKNGY 302 Query: 270 ------SIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE- 320 S G+ + HG R + AG + G Sbjct: 303 QSLNTPSKRLHKLQDDNGLTPRITIHGFRHSFISNLLIAGVPVTSVQKLVGHTDPTITLG 362 Query: 321 TYTK-GADRIRLGIKNSRR 338 Y A + + Sbjct: 363 VYAHVSAKQESEATAALAK 381 >gi|38637723|ref|NP_942697.1| putative integrase/recombinase [Ralstonia eutropha H16] gi|32527061|gb|AAP85811.1| putative integrase/recombinase [Ralstonia eutropha H16] Length = 336 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 36/310 (11%), Positives = 91/310 (29%), Gaps = 40/310 (12%) Query: 67 KPTTLKWLISEYRKSA--HWGSLAVNSRISFESYFDQIIRKSGDFD--------YRKITT 116 KPT L++ + +L+ N+ ++ F ++R D +I Sbjct: 2 KPTDFSMLVTSFLTHHLAAQRNLSPNTIKAYRDVFTLLLRYCRDVRGIALERLSLAQIDV 61 Query: 117 KHIRSGVES----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL-------SVERPK 165 + + ++ R + S+ L ++ F++ + + C + Sbjct: 62 GLVEAFLDHLANDRHVSVSTQNHRLAALHAFFRYVQSEVPERLLQCQQVLAIPLRRQPRA 121 Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225 + + + + Q SEG + + L +G R + ++ + + Sbjct: 122 SVGYLPKEYLAQLLAQPDLRTSEGCRDAVMLSVLYDTGARVQELIDLNAGDVRLDPPAQV 181 Query: 226 --TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM---------NATQFSIWFK 274 K V L D ++LL + + + + + Sbjct: 182 RLMGKGRKPRAVPLMDSTVELLLQYRRDNHLDRPEYADKPLFQNRQGTRLSRSGVRYLLQ 241 Query: 275 AKA---TKAGVNKS----AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-A 326 ++ + + H +R +G + G V E Y + Sbjct: 242 KYVIPVRRSHPDFTQRVSPHSLRHTKGMHLLQSGVPLEIIRDFLGHVDVKTTEIYARANL 301 Query: 327 DRIRLGIKNS 336 + R ++ + Sbjct: 302 EMKRKALEKA 311 >gi|24111756|ref|NP_706266.1| putative phage integrase [Shigella flexneri 2a str. 301] gi|30061876|ref|NP_836047.1| putative phage integrase [Shigella flexneri 2a str. 2457T] gi|24050540|gb|AAN41973.1| putative phage integrase [Shigella flexneri 2a str. 301] gi|30040120|gb|AAP15853.1| putative phage integrase [Shigella flexneri 2a str. 2457T] Length = 387 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 54/376 (14%), Positives = 108/376 (28%), Gaps = 61/376 (16%) Query: 17 RHGK-IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75 R G+ F +G+R + A T + Sbjct: 5 RRGEIWYASFTLPNGKRFKQSL-GTKDKRQATELHDKLKAEAWRVSKLGEIPDITFEEAC 63 Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP----- 130 + + S +S ++ R IT I S ++ + Sbjct: 64 VRWLEEKAHKK----SLDDDKSRIGFWLQHFAGMQLRDITESKIYSAMQKMTNRRHEENW 119 Query: 131 ------------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 ++ L+ ++ L + A +E+ ++ ++ P+ Sbjct: 120 RLRAEACRKKGKPVPEYTPKPASVATKATHLSFIKALLR-AAEREWKMLDKAPIIKVPQP 178 Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IF 222 K + IR + Q+ E + EF L +GLR S+ Q + Sbjct: 179 KNKRIRWLEPHEAQRLIDECPEPLKS--VVEFALATGLRRSNIINLEWQQIDMQRRVAWI 236 Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------------FS 270 + + K+ I V L D ++L + + + Sbjct: 237 NPEESKSNRAIGVALNDTACRVLKKQIGNHHRWVFVYKESCTKPDGTKAPTVRKMRYDAN 296 Query: 271 IWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +KA +AG++ H +R A+ AG L GW++++ Y Sbjct: 297 TAWKAALRRAGIDDFRFHDLRHTWASWLVQAGVPLSVLQEMGGWESIEMVRRYAH----- 351 Query: 330 RLGIKNSRRISSVVDS 345 L + + +DS Sbjct: 352 -LAPNHLTEHARQIDS 366 >gi|260599046|ref|YP_003211617.1| Integrase [Cronobacter turicensis z3032] gi|260218223|emb|CBA33120.1| Integrase [Cronobacter turicensis z3032] Length = 339 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 48/337 (14%), Positives = 94/337 (27%), Gaps = 47/337 (13%) Query: 14 ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + +GK + Y G+R+R A+ + K+ ++ + L Sbjct: 4 RKQSNGKWLCECYPNGREGKRVR-KQFATKGEAIAFENFTMDEVNKKPWLGEKEDRRR-L 61 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESR-- 126 +I ++ SL + + + I G+ ++T E+R Sbjct: 62 SEVIEQW------HSLYGQTLADPKRLMAKLSIICNGLGNPIASELTAGDFTKYREARLK 115 Query: 127 ------------KHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRP 173 P + ++ +F + + A NP + K + Sbjct: 116 GEVRSEDGTLMSPVKPRTVNLEQRNLSSVFGTLKKLGHWSAPNPLAGLPTFKIAEGELAF 175 Query: 174 WTKEDMQQFKSFWSEGSQPRLAFE--FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 T E++++ +E P L L +G R S++ L + K Sbjct: 176 LTPEEIKRLLDACAESQSPCLLMIAKICLATGARWSEAENLQGHQLSKYRITYTKTKGKK 235 Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK----SAH 287 TV + L T F+ +AG++ H Sbjct: 236 NRTVPISQDLYDELPKNRGKLFTPC-------------RKAFERAVKRAGIDLPEGQCTH 282 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R A+ G L G + Y Sbjct: 283 VLRHTFASHFMMNGGNILVLKEILGHADIKMTMIYAH 319 >gi|117623084|ref|YP_851997.1| integrase [Escherichia coli APEC O1] gi|115512208|gb|ABJ00283.1| Integrase [Escherichia coli APEC O1] Length = 331 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 54/319 (16%), Positives = 101/319 (31%), Gaps = 18/319 (5%) Query: 14 ERTRHGKIIYYFRK--GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 ++ G+ R G+RIR A+ + + +E++ P TL Sbjct: 4 KKLDDGRYEVDVRPQGADGKRIR-RKFKTKGEAQAFERHVLVNYHNKEWLEKP-ADRRTL 61 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRKH 128 L+ + + + G ++T K I R + + Sbjct: 62 TELLGRWWIYHGKSHERGGIERGRLTTIIAKFAEMGVSRADQLTKKTITDYRVVMMNDGL 121 Query: 129 TPSSAIQFLTSMRVLF-KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 P+S + L M +F K EY + NP V+R + + + E++ + S Sbjct: 122 KPASVNRHLAIMSGMFTKLIDAGEYHSHNPFREVKRLREAVTEMAFLSSEEITRLLS--M 179 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247 A L +G R S+ +H+ N + + K G T+ + +K + Sbjct: 180 LDGDELNATLVCLSTGGRWSEVSNLKAEHIINQMVTFMKTKNGKRRTIPVSQDLIKRIKT 239 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307 G+ + + + ++ H +R AT G L Sbjct: 240 KNSGRLFNA--------SYYKVRNALREVKPDLPDGQAVHVLRHTFATHFIMNGGNIITL 291 Query: 308 MATYGWKTVDQAETYTKGA 326 G + Q TY A Sbjct: 292 QRILGHSNIQQTMTYAHFA 310 >gi|297172260|gb|ADI23238.1| integrase [uncultured nuHF2 cluster bacterium HF0770_13K08] Length = 342 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 38/278 (13%), Positives = 88/278 (31%), Gaps = 15/278 (5%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY-RKITTKHIRSGVESR--KH 128 ++ ++K + + + + + +G + I + K Sbjct: 70 ADFVAYFKKLGERKGQSS---KVWRNVLNYLEVFTGGRVVFKNIDELWLEKWQRFLLEKV 126 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ---FKSF 185 + ++A+ + + AVR + NPC V+ KR+ T +++Q Sbjct: 127 SRNTAVGYYALTKAALNQAVRDRIIQDNPCKHVQNIKRQDTERIFLTFAEIKQLSETLPK 186 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 + F F ++GL + + ++++ T L Sbjct: 187 DENSQEVARMFLFGCFTGLSLGNLETLTYKQIESDT---VKFFRSKTKTWHHVPLNETAL 243 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGV--RKFSATISADAGAT 303 ++ + + +AG+ K H R AT++ +GA Sbjct: 244 SLIGDTFDCDPNGRIFNTPSRRYSQTLVGKWGKQAGIKKHVHMHVSRHTFATLNLSSGAD 303 Query: 304 AHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSRRIS 340 + + G K +D + Y K D + R + ++ Sbjct: 304 IYTVSKLIGHKKLDTTQIYAKVIDEKKRQAVDALPQLE 341 >gi|300817238|ref|ZP_07097456.1| site-specific recombinase, phage integrase family [Escherichia coli MS 107-1] gi|300530214|gb|EFK51276.1| site-specific recombinase, phage integrase family [Escherichia coli MS 107-1] Length = 387 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 54/376 (14%), Positives = 107/376 (28%), Gaps = 61/376 (16%) Query: 17 RHGK-IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75 R G+ F +G+R + A T + Sbjct: 5 RRGEIWYASFTLPNGKRFKQSL-GTKDKRQATELHDKLKAEAWRVSKLGEIPDITFEEAC 63 Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP----- 130 + + S +S ++ R IT I S + + Sbjct: 64 VRWLEEKAHKK----SLDDDKSRIGFWLQHFAGMQLRDITESKIYSAMHKMTNRRHEENW 119 Query: 131 ------------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 ++ L+ ++ L + A +E+ ++ ++ P+ Sbjct: 120 KLRAEACRKKGKPVPEYTPKPASVATKATHLSFIKALLR-AAEREWKMLDKAPIIKVPQP 178 Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IF 222 K + IR + Q+ E + EF L +GLR S+ Q + Sbjct: 179 KNKRIRWLEPHEAQRLIDECPEPLKS--VVEFALATGLRRSNIINLEWQQIDMQRRVAWI 236 Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------------FS 270 + + K+ I V L D ++L + + + Sbjct: 237 NPEESKSNRAIGVALNDTACRVLKKQIGNHHRWVFVYKESCTKPDGTKAPTVRKMRYDAN 296 Query: 271 IWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +KA +AG++ H +R A+ AG L GW++++ Y Sbjct: 297 TAWKAALRRAGIDDFRFHDLRHTWASWLVQAGVPLSVLQEMGGWESIEMVRRYAH----- 351 Query: 330 RLGIKNSRRISSVVDS 345 L + + +DS Sbjct: 352 -LAPNHLTEHARQIDS 366 >gi|23505472|ref|NP_700401.1| Integrase protein [Salmonella phage ST64B] gi|167995270|ref|ZP_02576360.1| integrase protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|207857414|ref|YP_002244065.1| phage integrase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|23379219|gb|AAL25906.1| Sb28 [Salmonella phage ST64B] gi|205327035|gb|EDZ13799.1| integrase protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|206709217|emb|CAR33550.1| phage integrase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261247218|emb|CBG25042.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994049|gb|ACY88934.1| integrase protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158562|emb|CBW18073.1| bacteriophage integrase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|323130323|gb|ADX17753.1| Integrase protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|326623804|gb|EGE30149.1| Integrase protein [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 329 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 60/329 (18%), Positives = 110/329 (33%), Gaps = 44/329 (13%) Query: 24 YFRKGHGRR--IRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS 81 Y+ K G I ++ AY + G RK T L ++ S Sbjct: 23 YYWKPGGSTENIAPADATKAEVWVAYEKKVEG-----------RKNRITFTQLWRKFLAS 71 Query: 82 AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS-SAIQFLTSM 140 A + LA ++ + ++ I+ GD + + I +HIR +++R A +SM Sbjct: 72 ADYADLAPRTQKDYLAHEKYILAVFGDAEAKAIKPEHIRRYMDARGQKSRVQANHEHSSM 131 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200 +F+W+ ++ YV NPC+ V++ + D + + + R A E Sbjct: 132 SRVFRWSYQRGYVPGNPCVGVDKFPKPQRDRY---ITDEEYRAIYNNATPAVRAAMEIAY 188 Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL--LAMTPIGKETFFIN 258 R SD + + I+ KTG D + + Sbjct: 189 LCAARVSDVLKMNWNQILEKGIFIQQGKTGVKQIKSWTDRLRDAVEICREWGEEGPVIRT 248 Query: 259 NDKQKMNATQFSIWFKAKATKAG------VNKSAHGVRKFSATISADAGATAHE-----L 307 ++ + F+ ++ AG ++ + H + G + +E Sbjct: 249 MYGERYSYKGFNEAWRKARKAAGDDLGRPLDCTFHDL--------KAKGISDYEGTAKDK 300 Query: 308 MATYGWKTVDQAETYTKGA------DRIR 330 G KT Q Y + DR R Sbjct: 301 QKYSGHKTESQVLVYDRKVKMSPTLDRKR 329 >gi|320528560|ref|ZP_08029717.1| site-specific recombinase, phage integrase family [Solobacterium moorei F0204] gi|320131146|gb|EFW23719.1| site-specific recombinase, phage integrase family [Solobacterium moorei F0204] Length = 366 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 55/363 (15%), Positives = 110/363 (30%), Gaps = 35/363 (9%) Query: 11 VTKERTRHG---KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67 V +++ R+ Y G ++ Y S Sbjct: 3 VYRDKQRNAWFVVTRYKDWTGKVKQTTKRGFRTKHDAQRYESLF--------IDKKKDST 54 Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESR 126 K I Y + + N+ ++ + F I+ G+ +IT K I + Sbjct: 55 DILFKNFIEIYLELMEHR-IKENTLMTKQYIFYHQIVPYLGEMKLDEITPKDIVHWQDQV 113 Query: 127 KHTPSSAIQFLTS----MRVLFKWAVRQEYVAINPCLSVERPKRKTE-GIRPWTKEDMQQ 181 + +L + + LF +AVR + NP ++ I+ WTKE+ Sbjct: 114 MKDNNYKQTYLKTIHNQLSALFNYAVRFYGLKNNPARLAGNMGKEEVSEIKFWTKEEYLT 173 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--------- 232 F + AFE L + G+R + + +++ K+ Sbjct: 174 FSRAMMNKEESYHAFEILYWCGIRLGELLALTAEDFNFEKKTLRINKSYQHIKGKDVITT 233 Query: 233 -------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 + LPD + +++ + + + GV + Sbjct: 234 PKTRKSNRVLTLPDFLADEMQDHISRLPYLKVDDRIFTITKSGLHHEMDRGYRETGVKRI 293 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 H +R ++ + G +A ++ G ++V Y L I IS + Sbjct: 294 RVHDLRHSHVSMLIEMGFSAVDIANRVGHESVKVTYRYAHLFPNKNLMIAKKLNISRNGE 353 Query: 345 SDD 347 D+ Sbjct: 354 KDE 356 >gi|254436771|ref|ZP_05050265.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 307] gi|198252217|gb|EDY76531.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 307] Length = 290 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 37/267 (13%), Positives = 77/267 (28%), Gaps = 17/267 (6%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---P 130 L + + ++ + T +R+ T P Sbjct: 4 LRERMIEDMRIHGMGDKAQKAHIRAVKHFAGFL-KRSPDTATPDDLRAYQLHMTDTEVTP 62 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-EG 189 + + ++R LF ++ + + + + E++ + + G Sbjct: 63 PTFNARIMALRFLFGTTCDRKGMKRYM----QFCTQPRRLPTVLSIEEVAEVIAAAPGPG 118 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLLAM 247 + R A +GLR S+ C V + ++ I + V L + LL Sbjct: 119 LKYRAALSISYGAGLRASEVCSLKVSDIDSDRMLIHVDEGKGGKDRKVMLSPDLLDLLRD 178 Query: 248 TPIGKETFFI----NNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAG 301 + ++A Q S F + G+ + H +R AT +A Sbjct: 179 YWREAQPAGWLFPGKPKINPISARQLSRAFNSAKHVVGISKPATLHTLRHSFATHLLEAN 238 Query: 302 ATAHELMATYGWKTVDQAETYTKGADR 328 + G + YT A + Sbjct: 239 IDVRVIQVLLGHAKLSTTARYTHVATK 265 >gi|134045285|ref|YP_001096771.1| tyrosine recombinase XerC subunit [Methanococcus maripaludis C5] gi|132662910|gb|ABO34556.1| tyrosine recombinase XerC subunit [Methanococcus maripaludis C5] Length = 291 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 43/264 (16%), Positives = 96/264 (36%), Gaps = 14/264 (5%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 +I Y + + I+ S +R + + +I+ + + + + ++ Sbjct: 16 IIDNYMAFR--SGHSDKTVITNISGIRIFMRFHKNKTFDEISLEDVIEFYRKHESSENTK 73 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193 IQ+L+ + + + W + + Y NP RK++ R + ++ + + R Sbjct: 74 IQYLSRLTLFYNWGISENYFLRNPVEKFLVTLRKSKKEREYLTKEQTNYLLSNVFEYEYR 133 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGK 252 L F L++G+R S+ + + + +I+ K V + + L + I + Sbjct: 134 LFLMFFLHTGVRNSEFRNLKIHDVDMDERTIRILGKGRKERYVFIDNELYSYLKIWLIQR 193 Query: 253 ETFFINNDKQKMNA----------TQFSIWFKAKAT-KAGVNKSAHGVRKFSATISADAG 301 ++ F +D +N F+ + + K G + H +R AT D G Sbjct: 194 DSKFPKSDHFFVNRLGNPIRLTHLVSFTDYLNEVSKNKIGFRITPHILRHTFATRCIDMG 253 Query: 302 ATAHELMATYGWKTVDQAETYTKG 325 L G + + Y Sbjct: 254 MDLKTLSLILGHEDIKTTSIYLHK 277 >gi|319949186|ref|ZP_08023275.1| site-specific tyrosine recombinase XerD [Dietzia cinnamea P4] gi|319437172|gb|EFV92203.1| site-specific tyrosine recombinase XerD [Dietzia cinnamea P4] Length = 316 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 49/287 (17%), Positives = 82/287 (28%), Gaps = 38/287 (13%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHT- 129 I EY + ++ ++ D+ R G D +T H+ Sbjct: 11 IREYLDHLAVEKGASAHTLAAYRRDLDRYRRHLAAVGVDDLTAVTEAHVEDFRARLATGD 70 Query: 130 ---------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 PSS + L ++R L ++A R + +V P+ + + M Sbjct: 71 PDEGRPPLAPSSVARTLAAVRGLHRFATRDGVTDTDVAAAVAPPRPPRRLPKALPLDRMI 130 Query: 181 QFKSF--------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-----KTQ 227 + R E L +G R ++ V L Sbjct: 131 AVIEAAGDTGVDTDPARLRDRAMLELLYATGARAAELIGLDVDDLDGLDHPDGGTVILRG 190 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETF---------FINNDKQKMNATQFSIWFKAKAT 278 K G V + + + F+N +++ A A Sbjct: 191 KGGKERLVPVGRPACEAVGAYLTRARPALAKRGGPALFLNTRGGRISRQTLWNVVSAAAA 250 Query: 279 KAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 +AGV S H R AT D GA + G +V + YT Sbjct: 251 RAGVTQEVSPHSFRHSFATHLLDGGADIRVVQELLGHASVTTTQVYT 297 >gi|226325969|ref|ZP_03801487.1| hypothetical protein COPCOM_03782 [Coprococcus comes ATCC 27758] gi|225205511|gb|EEG87865.1| hypothetical protein COPCOM_03782 [Coprococcus comes ATCC 27758] Length = 373 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 47/359 (13%), Positives = 102/359 (28%), Gaps = 45/359 (12%) Query: 5 LRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64 +LP + R R F T +T K E+ Sbjct: 8 RKLPKGI---RQRGNTFEGRFMYKGVSYTVQASTITKT-----QKEMTDLKYKLEHGLYV 59 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGV 123 +K+ TL + + + + + S+E Y+ I + G+ + +I +HI+ Sbjct: 60 KKEKITLMEWYETWLEEYKKNRVKIGTYTSYEKYYKSTINNRLGNKELSEIRGEHIQKLY 119 Query: 124 ESRKHTPSSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRK-TEGIRPWTKEDM 179 + + + A++ + NP E P++ T+ R ++ Sbjct: 120 NDMVKEGYAISSIKIVSAILNGCLQQAMKNGLIERNPVKLAELPRQTGTKKERTAMTKEQ 179 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-------------T 226 Q ++E S F +L +G+R + + I Sbjct: 180 QDLFMKYAEESYLYHFFSVMLRTGMRKGEMQGLKYSDIDKKQNVIHVRRTLKYIEGKGYF 239 Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFF------------INNDKQKMNATQFSIWFK 274 + T T + + ++ N + ++ + Sbjct: 240 EDTPKTRTSTRDIPLTAAITEHIEAQRKYWGFKVVRMDQYLFCNENGDPISRERIQGEID 299 Query: 275 AKATKAGVNK------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGA 326 + + ++H R AT + +AG L G ++ Y+ Sbjct: 300 RIIKRIKSDGYDFPRITSHVFRHTFATRAIEAGMPPQVLKTILGHSSLAMTMDLYSHVL 358 >gi|169830694|ref|YP_001716676.1| phage integrase family protein [Candidatus Desulforudis audaxviator MP104C] gi|169637538|gb|ACA59044.1| phage integrase family protein [Candidatus Desulforudis audaxviator MP104C] Length = 390 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 42/296 (14%), Positives = 94/296 (31%), Gaps = 29/296 (9%) Query: 69 TTLKWLISEYRK-SAHWGSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVE 124 T + I Y + +A + ++ F + + G + R+ITT + + + Sbjct: 1 MTFEEAIEAYFEVGVVLRGMAAGTVEAYRCDFRDFSRFLESQGVGEVREITTAVVNTYLV 60 Query: 125 SRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-WTKEDMQ 180 + S+ + ++ L + V+Q +V NP V + + ++ Sbjct: 61 GLRKRGLSLSTVHRRKNALSSLLGFCVQQGWVDNNPLRKVILQTKPRTVRNVVLSDMAVR 120 Query: 181 QFK-----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------NNIFSIK 225 F +G L+++GLRCS+ A H+ + + K Sbjct: 121 TFLQSDVTYRSVDGLTVTAIKMLLVFTGLRCSEIVSADWAHVNLNSGLLTVFNSKNTARK 180 Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--- 282 G + L ++ L P + ++ + + + Sbjct: 181 GLPEGKDRDIPLCQTVIQALNALPYRQGPLLQTRGGLRLGVDALREIVARLSQASRLEYD 240 Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKN 335 + H R A+ G + ++ G K + Y +R+R ++ Sbjct: 241 HRPLTPHCFRHNLASQLVSRGYSEADVATLLGHKPGTVTQAYIHSTIERLREAVQG 296 >gi|314939501|ref|ZP_07846733.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133a04] gi|314944175|ref|ZP_07850820.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133C] gi|314951902|ref|ZP_07854934.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133A] gi|314994468|ref|ZP_07859747.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133B] gi|314997872|ref|ZP_07862773.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133a01] gi|313588097|gb|EFR66942.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133a01] gi|313591123|gb|EFR69968.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133B] gi|313595936|gb|EFR74781.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133A] gi|313597237|gb|EFR76082.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133C] gi|313641202|gb|EFS05782.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133a04] Length = 381 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 54/380 (14%), Positives = 113/380 (29%), Gaps = 49/380 (12%) Query: 11 VTKERTRHGKIIYYFRKG------HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64 + + + G + F+ G+ +R + T A L E Sbjct: 4 IKQYEKKDGTKAWLFQTYLGISPLTGKEVRTTRRNFKTKKEA-QIELNRLLVDFEENGLK 62 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 ++ T K + + +S V + I+ K G F ++ITTKH++ + Sbjct: 63 KETNETFKEVYDLWYESYKTTVKEVTQLKIEIKFNKWILPKYGQFRIKEITTKHVQKILN 122 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP----------W 174 T ++ +FK+A+ + NPC V P R E + Sbjct: 123 QWAKTTDQYKVLHSTASRIFKYAMTLGIITKNPCELVIMPNRNVEKKKDTVKIYSRDQLE 182 Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--------- 225 + + K + FL +SG R S++ + N ++ Sbjct: 183 SLFQYLESKRSTYRADYDKTLLRFLFFSGCRISEALALDWSDIDFNSNTVTINKTLSQTK 242 Query: 226 -------------------TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA 266 KT + + +L + F K+ + Sbjct: 243 YGYKISSPKTRNSYGSLSLDNKTINWLKKWQINQKRYMLTLGITDPTMIFCGIYKEIITK 302 Query: 267 TQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK 324 +G+ H R A++ ++G + E+ ++ +TY Sbjct: 303 HAIYSRMITICKNSGIPFLGNHVTRHTHASMLLESGVSMKEVQERLRHSSIKLTMDTYAH 362 Query: 325 GADRIRLGIKNSRRISSVVD 344 + K +++ ++ Sbjct: 363 LTKETK--EKTVEKLAEHLN 380 >gi|304320725|ref|YP_003854368.1| Phage integrase [Parvularcula bermudensis HTCC2503] gi|303299627|gb|ADM09226.1| Phage integrase [Parvularcula bermudensis HTCC2503] Length = 421 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 45/377 (11%), Positives = 109/377 (28%), Gaps = 50/377 (13%) Query: 9 PFVTKERTRHGKIIYYF-------RKGHGRRIRLPYPHE------STFIPAYMS-ALTGS 54 P +G+ Y R RR+ + + Y++ A G Sbjct: 33 PGFGLRVAANGRKAYIVSYRVGVGRGAKQRRVSIAASNTMTCEMARKEAQVYLANARLGE 92 Query: 55 TPKREYINSPRKKPT-TLKWLISEYRKSAHWGSLA------VNSRISFESYFD-QIIRKS 106 + E + + K T+ I + A + + + S D +I Sbjct: 93 DRREEIDAAAKAKADITVAKAIEIWHAEAAHRNRRTGKARDPRNIRNEMSRMDAHLIPAI 152 Query: 107 GDFDYRKITTKHIRSGVESRKHTPS-------------------SAIQFLTSMRVLFKWA 147 G+ R++T + + + + +A + + S + + + Sbjct: 153 GNKKLRELTRRDVELLRDDITAGRTAVVQKTKKHGVRRATGGTGTAKRTMVSFKSVLAYM 212 Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL-----LYS 202 +V N ++ + E + K R L + Sbjct: 213 KDIGFVDQNVAANLRLAPDGKKERYLSVAEAHRLGKCLDEWEQMDRRMTGITIIRLLLMT 272 Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP-DGFMKLLAMTPIGKETFFINNDK 261 G R + + + + ++T + ++ + +L P T+ N+ Sbjct: 273 GARTKEIEELKWSEIDFDRSFFRFEETKSGRSIRPISPQVLDILKGLPRLHPTWVFLNNA 332 Query: 262 QKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320 ++ +AG+ H +R A+ + G + + G + + Sbjct: 333 GTGPYCGTQAVWRLVREEAGLPDVRKHDLRHSFASFALANGLSLPVIGTLLGHSRPETTQ 392 Query: 321 TYTKGADRIRLGIKNSR 337 Y +DR ++ ++ Sbjct: 393 RYAHLSDRH--AMEAAK 407 >gi|312793729|ref|YP_004026652.1| integrase family protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180869|gb|ADQ41039.1| integrase family protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 319 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 26/268 (9%), Positives = 71/268 (26%), Gaps = 14/268 (5%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 + + + + + +E + ++ D + S+ P Sbjct: 14 WEDALQLFLSYKKAQGRSDLTIRDYEIHIRAFFKRYPDCFNDTQKLRKCLIEYLSQPMKP 73 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM---QQFKSFWS 187 + + +++ W V + + NP + K + + Q Sbjct: 74 VTYNLRMKNLKAFLNWCVEEGIIPTNPIAKFKPRKTDDRIVEIDIETLQKLLQLPDRKTF 133 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT----IITVELPDGFMK 243 G + L +G+R ++ H + + + Sbjct: 134 AGLRDYALMLLTLDTGIRPKEAFSLLKDHFDFKNMQVVIPSDVAKTRVSRVLPISPVTAN 193 Query: 244 LL-------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296 + F + + +N +++ + + + GV + +R A + Sbjct: 194 AIKKLISSRHPQWDDSVPVFCSVTGKPLNRYRWNERMREYSKQLGVKIKPYDLRHMFALL 253 Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324 G L G T++ + Y Sbjct: 254 YLKNGGYELSLQKIMGHTTLEMTKKYVH 281 >gi|293372407|ref|ZP_06618791.1| phage integrase, N-terminal SAM domain protein [Bacteroides ovatus SD CMC 3f] gi|292632590|gb|EFF51184.1| phage integrase, N-terminal SAM domain protein [Bacteroides ovatus SD CMC 3f] Length = 330 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 33/294 (11%), Positives = 92/294 (31%), Gaps = 14/294 (4%) Query: 42 TFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ 101 + A +++ + E + +++ + L+S + + + + + + ++ Sbjct: 23 ARLKAVLASELHNVEIVEKEDCSKQQAQENEHLLSSFISAKKIEGCSEKTLAYYRNTIER 82 Query: 102 IIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP 157 ++ ITT IR+ E + + + F W ++Y+A +P Sbjct: 83 LLLTL-SVAICHITTSDIRAYLSDYQEEHQSSKVTIDNMRRIFSSFFAWLEDEDYIAKSP 141 Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217 + + K + + E ++Q + + L +G+R + + + + Sbjct: 142 VRRIHKVKTDSLVKEVLSDEQLEQ-LRDSCTNKRDLALIDILSSTGIRVGELVKLNREDI 200 Query: 218 QNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFI------NNDKQKMNATQFS 270 + V L + ++ ++ + Sbjct: 201 DFHERQCVVFGKGNKERVVYFNARTKLHLQQYLDERTDDNPALFVSLHSPHTRLTISGVE 260 Query: 271 IWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + + + K H R+ AT++ D G ++ G +D Y Sbjct: 261 VRIRKLGKSLSMPKVHPHKFRRTLATMAIDKGMPIEQVQRLLGHVRIDTTLHYA 314 >gi|228961482|ref|ZP_04123093.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis serovar pakistani str. T13001] gi|228798196|gb|EEM45198.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis serovar pakistani str. T13001] Length = 367 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 45/340 (13%), Positives = 104/340 (30%), Gaps = 40/340 (11%) Query: 29 HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA 88 G IR + L + E + + K +E+ + +L Sbjct: 10 KGNPIRRSKMATAKNKRQAEKELALFIAEIEVGEYIKPQKMLFKDFFAEWIQKYAKTNLQ 69 Query: 89 VNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTSMRVL 143 + ++ D II G+ I T H+ + ++ ++ T +++L Sbjct: 70 KTTLFNYIHILDTHIIPVLGNKKVEDIKTIHLVTLFHGKLPAKGLATTTINSIHTRVKML 129 Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-FWSEGSQPRLAFEFLLYS 202 FK A ++ NP V + K K + ++P+ ++++ + + E ++ F+ + + Sbjct: 130 FKKACEWGFIKKNPMDGVSKLKNKRQELQPYDQKEIVKILALTEQEKDMNKMLFQLAIVT 189 Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-----------------------------I 233 G+R + H+ + Q+T Sbjct: 190 GMRRGELLGLEWGHIDFQNDMVHIQQTIVRAGKEILLKEPKTSKSKRIISIPPTFTTKLK 249 Query: 234 TVELPDGFMKLLA---MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGV 289 + ++ F + + + + S ++ K G+ + HG+ Sbjct: 250 QYKKYCAEKRIACGDLWEGEEHLFLFSTWNGRPLTPEKASTRWQYFTQKHGLRHIKLHGL 309 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADR 328 R AT G + G + Y + Sbjct: 310 RSTHATYLLTQGENLKVISERLGHSDIQTTMNIYAHVLEE 349 >gi|296101651|ref|YP_003611797.1| site-specific recombinase, phage integrase family [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295056110|gb|ADF60848.1| site-specific recombinase, phage integrase family [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 387 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 60/381 (15%), Positives = 115/381 (30%), Gaps = 60/381 (15%) Query: 15 RTRHGKIIYYFRKGHGRRIRLP-YPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 R G +F G+RIR + L + + I T + Sbjct: 4 TLRGGVWHCHFVTPSGKRIRRSLGTGDKKQAQELHDKLKAEAWRVDKI--GELPTRTFEE 61 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR------- 126 + + S ++ + +R D IT + V Sbjct: 62 CCIRWIREKEHK----RSLDDDKTKIEYFLRHFSGRDISTITADQVNEAVSKMVNRKHIQ 117 Query: 127 ----------------------KHTPSSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVER 163 + ++ Q L+ MR LFK A ++ P + ++ Sbjct: 118 VWESRRDAAIRRGKEPPPYVEKPVSHATKSQHLSFMRSLFKAAANDWGWIKTPPVIKTKK 177 Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223 P K IR T+++ ++ + E +P + F L +GLR S+ Q + Sbjct: 178 PISKR--IRWLTRDEAERLIACMPESIKPVVIFA--LATGLRRSNIIDLEWQQVDMQRKV 233 Query: 224 IKTQKTG----TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT-QFSIWFKAKA- 277 I V L D ++L + + K + + Sbjct: 234 AWVNPENAKAGKAIGVALNDTACRVLRDQIGKSSRWVFVHTKPSTRPDKTVTPAVRKMRV 293 Query: 278 ----------TKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 KAG+ + H +R A+ +G L GW++++ Y A Sbjct: 294 DDNSAWRIGLAKAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLA 353 Query: 327 DRIRLGIKNSRRISSVVDSDD 347 +++R+I ++ + D Sbjct: 354 PNH--LSEHARKIDAIFGNHD 372 >gi|254820912|ref|ZP_05225913.1| phage-related integrase [Mycobacterium intracellulare ATCC 13950] Length = 403 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 45/359 (12%), Positives = 89/359 (24%), Gaps = 37/359 (10%) Query: 1 MTPSLRLPPFVTKERTR-----HGK-------------IIYYFRKGHGRRIRLPYPHEST 42 MT L V + HG + R + Sbjct: 1 MTQKRNLRAGVEDRWNKTVHDEHGSNPQTVPSATYGKGKRWRARYVDEQGREHVQSFTRK 60 Query: 43 FIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI 102 +T +PR T++ + + + ++ QI Sbjct: 61 VDAQQWLTTQTATIVAGTHVAPRDAKLTVQQWCDTWIEGYKVHR--EGTVREARTHIRQI 118 Query: 103 IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF---LTSMRVLFKWAVRQEYVAINPCL 159 + + GD ++ +++ + A + + + AV + NPC Sbjct: 119 VTEFGDAPLTQVRPSQVKAWTARLRADGMKASYIYALHSRLSQILSDAVHDGVLGRNPCS 178 Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY------SGLRCSDSCRAG 213 P + T E + + + + SGLR SD Sbjct: 179 RRTAPPMGKAKVYVATTEQVWALHDAVPDPLKVAVLLGAFAGLRVAEVSGLRVSDVDFIR 238 Query: 214 VQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273 + K KT + LL + K + Sbjct: 239 GVVHPKQQWPDKPLKTEGSSAPIPIPQDLALLLSASVQKYPAEMMVTNGPGTDRCGPWII 298 Query: 274 KAKAT--KAGVN-----KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 + + G+ S H +R + A++ G + A + +TY+ Sbjct: 299 ERAIRDVRGGIEGLPEGFSFHDLRHYLASLLIARGCDVKTVQARLRHSSAKTTLDTYSH 357 >gi|167991593|ref|ZP_02572692.1| site-specific recombinase, phage integrase family [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205330049|gb|EDZ16813.1| site-specific recombinase, phage integrase family [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] Length = 326 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 42/307 (13%), Positives = 97/307 (31%), Gaps = 23/307 (7%) Query: 26 RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85 R G+RIR A+ + ++E+ R TL L+ + K H Sbjct: 18 RGRDGKRIR-RKFERKAEALAFERYTIANASQKEWGGQ-RADRRTLTELLDIWWK-YHGQ 74 Query: 86 SLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTS 139 + ++ F+ +++ GD ++ + + R + ++ + + Sbjct: 75 NHEHGTKE-----FNHLLKTISGIGDIPVSRMNKRALMDYRSMRLRDGISAATINRDMYR 129 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199 + +F ++ + + + P + + ++ + G L Sbjct: 130 LSGMFTKLIQLDEFSGQHPIHGLPPLTEANPEMTFLEKAEIEKLLNVLTG-DDLLVALLC 188 Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259 L +G R ++ + + + K G TV ++ K + Sbjct: 189 LSTGGRWTEVATLKPAQITSCRVTFLKTKNGKKRTVP--------ISEELEKKVKEEASA 240 Query: 260 DKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 K++ +F + N++ H +R A+ G L G ++ Q Sbjct: 241 KLFKVDYEKFCEILRRVKPDIPPNQATHILRHTFASHFMMNGGNIIALQQILGHASIQQT 300 Query: 320 ETYTKGA 326 TY A Sbjct: 301 MTYAHLA 307 >gi|86130954|ref|ZP_01049553.1| phage integrase family protein [Dokdonia donghaensis MED134] gi|85818365|gb|EAQ39525.1| phage integrase family protein [Dokdonia donghaensis MED134] Length = 357 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 53/373 (14%), Positives = 108/373 (28%), Gaps = 46/373 (12%) Query: 1 MTPSLRLPPFVTKERTRHGKIIYY---FRKGHGRRIRLP-----------YPHESTFIPA 46 M+ LR ++ ++G YY + G L Sbjct: 1 MSVKLRT------KKLKNGGKSYYLDIYHNGQRSYEFLGIKTVSKGVNKDTTESRKEKQR 54 Query: 47 YMSALTGSTPKR-----EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ 101 A + Y K L + R+ + + ++ Sbjct: 55 IAEARAAQKEIELISGGSNYIPRHIQRINFFDFSEIYLKEY----LKKDGRMIY-AAVEK 109 Query: 102 IIRKSGDFDYR--KITTKHIRSGVESRKH----TPSSAIQFLTSMRVLFKWAVRQEYVAI 155 +G+ + IT ++ + H + + ++T + L K A + + Sbjct: 110 FREFTGNDKLKIIDITPDLMQRFYDFLIHKAGLSGETPHNYITRFKKLLKSAKNKGIIKE 169 Query: 156 NPCLSVERPKRKTEG---IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212 P + ++++ + + + AF F Y+GL ++ + Sbjct: 170 VPTADIRFSNPNKGDTLSKEVLDIDEIKVLYNTYCGNDVVKRAFIFCCYTGLGLAEIRKL 229 Query: 213 GVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272 H++ N I+ KT + I EL + LL + F + T + Sbjct: 230 KWGHIKKNRLVIQRSKTDSKIDNELSKQTLSLLGKRKLNDNLVFDLKGI---SDTAVNKN 286 Query: 273 FKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 K +A + K + + R A + GA + G + Y D R Sbjct: 287 LKNWLRRADIEKKITFYCARHSFAVLLLLNGANLKSVADAMGHSSTKTTLKYLNHVD--R 344 Query: 331 LGIKNSRRISSVV 343 L + + S Sbjct: 345 LKDEAINNLPSFK 357 >gi|259503196|ref|ZP_05746098.1| tyrosine recombinase XerD [Lactobacillus antri DSM 16041] gi|259168853|gb|EEW53348.1| tyrosine recombinase XerD [Lactobacillus antri DSM 16041] Length = 295 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 39/286 (13%), Positives = 96/286 (33%), Gaps = 24/286 (8%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH------IRSGVE 124 L+ +Y + N+ +S+ DQ + T + + + Sbjct: 2 DELVDKYLAYLKSNHGRSANTLLSYRRDLDQAVAFFRQRGVSDWTAVDQYQLLALVAEQK 61 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 R +P++ + L+++R +++ VR + + NP ++ ++ + + Sbjct: 62 KRGRSPATINRQLSALRQFYRYLVRHQQLRFNPTELIDNQEQTDDTPPVILTAAEIKQLL 121 Query: 185 F-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELP 238 G + R L +G+R S+ + L +I ++ + V + Sbjct: 122 AAPNPDHPLGKRDRAMLAVLATTGMRVSELVALLLTDLHLDIKMLRLGSGSRRERLVPVS 181 Query: 239 DGFMKLLAMT---------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AH 287 D ++ L +G++ F+N ++ + +AG+ K+ Sbjct: 182 DQAVQELEHYLAAVRPQLAAMGEQAVFVNAHGHQLTRQGIWKKLRELVRRAGIEKTVTPR 241 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 +R A +GA + G+ + + Y K + Sbjct: 242 TLRYSFAVQLLQSGADGRLIQEMLGYSELRAIKPYLKMTVQELSAD 287 >gi|254820529|ref|ZP_05225530.1| prophage integrase [Mycobacterium intracellulare ATCC 13950] Length = 340 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 36/305 (11%), Positives = 87/305 (28%), Gaps = 27/305 (8%) Query: 43 FIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-Q 101 A+ + G PR +L + ++Y S ++ + + +++ + Sbjct: 3 EARAFKADRDGEAAIGARRFDPRLGRASLSAIWTQYSASKQPA-VSPKTWSGYAQHWELR 61 Query: 102 IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161 I + G +I+ K ++ + P + + L +R + A + INP V Sbjct: 62 ISPRFGHVPVDEISRKDVQQFIGGLTVGPWAKLATLRLLRSILDMAREDGRIHINPAQGV 121 Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--- 218 + + + L ++GLR S+ V + Sbjct: 122 SSGRIPARERHRYLSATEVAALAHACGDQGD--IVTILAFTGLRWSELVGLRVGDIDLKA 179 Query: 219 ---------NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ- 268 ++ +++ + ++ + Sbjct: 180 RRLYVRQAAPDVEGRIIVGPPKTRAAVRTVPLPRIVIDALKPRIENRSTKEQAITSPNGG 239 Query: 269 --------FSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 + K G+ + H +R A+++ +GA + T G T Sbjct: 240 FLRSNNWRRHTHWNKALKKTGLAPLTIHDLRHTYASLARKSGADLRYVQKTMGHSTPTVT 299 Query: 320 E-TYT 323 Y+ Sbjct: 300 ANIYS 304 >gi|241992522|gb|ACS73599.1| IntI1 [uncultured bacterium] Length = 315 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 35/302 (11%), Positives = 84/302 (27%), Gaps = 52/302 (17%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132 ++ + R+ + ++ + ++ + IR G + + + + + + S Sbjct: 16 VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 ++ L + + + + RP+ T +++ + + Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV----------------- 235 RL + L +G+R S+ + V+ L + +I ++ Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSRDRALMLPESLAPSLREQLS 193 Query: 236 ------------------------------ELPDGFMKLLAMTPIGKETFFINNDKQKMN 265 + + A + + M Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253 Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 F FK +AG+ K + H +R AT +G + G V YT Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313 Query: 324 KG 325 Sbjct: 314 HV 315 >gi|94985803|ref|YP_605167.1| phage integrase [Deinococcus geothermalis DSM 11300] gi|94556084|gb|ABF45998.1| phage integrase [Deinococcus geothermalis DSM 11300] Length = 285 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 37/272 (13%), Positives = 88/272 (32%), Gaps = 15/272 (5%) Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128 TTL+ + + + ++ + + + Sbjct: 4 TTLQTQAERFLTELK---RSPQTVRAYRADLRHLTTWLEETGQVLNGEGLDAYFAAHLHW 60 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 P++ + T++ WA+++E + +P L +ERP R +E++++ + Sbjct: 61 APATRNRKQTALERFCHWALQRELLDRDPTLHLERPSLPPPHPRGLRREEIERIFAVIPA 120 Query: 189 GS-QPRLAFEFLLYSGLRCSD-----------SCRAGVQHLQNNIFSIKTQKTGTIITVE 236 + L F + +GLR + + + +T V Sbjct: 121 EQVRDALLFRLVFETGLRIGEALGVHVEDLDLTRGDEHLTVLGKGSRRRTVLLDDPKLVN 180 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296 + +++ L T N + ++ A +AGV + H +R AT Sbjct: 181 MLRRYLRTLGYTHGPLFQATKNGRGGPLRYQSVQERWQGYAERAGVTCTLHQLRHSHATE 240 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADR 328 + G + + G + + Y + +D+ Sbjct: 241 LVNGGVSLATIRKRLGHQHIQTTLRYAEVSDQ 272 >gi|291536935|emb|CBL10047.1| Site-specific recombinase XerD [Roseburia intestinalis M50/1] Length = 366 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 48/365 (13%), Positives = 106/365 (29%), Gaps = 51/365 (13%) Query: 19 GKIIYYFRKGHGR----RIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 GK +R + + L + T + Sbjct: 10 GKWRVVYRYTDWTGETHQSSKRGFPTKREAQMWERELLLKKEAKL--------DMTFESF 61 Query: 75 ISEYRKSAHWGSLAVN---SRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----- 126 Y + + N ++ + +I+ G +I + I + Sbjct: 62 YEIYVEDMQNR-IRDNIWGTKTNIART--KILPYFGKRKIGEIEPRDIIAWQNELFAIRQ 118 Query: 127 -KHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQ 181 P SA + + + +F AV ++ NP ++ WTKE+ + Sbjct: 119 PNGKPYSASYLQKIHSQLSAIFNHAVNFYHLPSNPAQKAGNMGKEEHREMLFWTKEEYLK 178 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 F + AFE L + GLR + +++ K+ + E Sbjct: 179 FADVMMDKPVSYYAFEILYWCGLRMGELLALTPADFNFETHTLRINKSYQRLHREDVITP 238 Query: 242 MKLLAMTPIGKETFFINNDKQKM----------------NATQFSIWFKAKATKAGVNK- 284 K L K F+ ++ Q + + + +GV + Sbjct: 239 PKTLKSNRTIKMPQFLCDEMQDYLKMLYEPKEDERIFTISKSYLHHEMNRGSKVSGVKRI 298 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG--ADRIRLG----IKNSRR 338 H +R ++ + G T + G +++D Y +++ ++ I+ + Sbjct: 299 RVHDLRHSHVSLLINMGFTVLAIADRMGHESIDITYRYAHLFPSEQTQMAEQLDIERMEK 358 Query: 339 ISSVV 343 ++ Sbjct: 359 LNGEK 363 >gi|157827404|ref|YP_001496468.1| integrase [Rickettsia bellii OSU 85-389] gi|157802708|gb|ABV79431.1| Integrase [Rickettsia bellii OSU 85-389] Length = 381 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 48/312 (15%), Positives = 105/312 (33%), Gaps = 16/312 (5%) Query: 28 GHGRRIRLPYPHESTFIPAYMSALTGSTPKRE-----YINSPRKKPTTLKWLISEYRKSA 82 RI++ + I A + A + + K T K Y Sbjct: 52 KKYHRIKIGVFPYLSIIDARLKASELKGKIAQGYNPIEEKARLSKEPTFKEFYDRYLDEY 111 Query: 83 HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS-AIQFLTSMR 141 + + + D+ + + I I+ T A +FL + Sbjct: 112 SKINNKR--WKDYAASVDRYAKHLYNRKISTIQKADIQELFNKLTKTGKYGANRFLEVLS 169 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE--GSQPRLAFEFL 199 +F A+ E + +NP + +++ ++ R T+E++ +F + SE + F Sbjct: 170 PVFSKAIEWELLTVNPVIGIKK-HKEQSRDRYLTREEIPRFFTAISEEQNQVMKDFFLIA 228 Query: 200 LYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI 257 LY+ +R + + + + K G + L D +++L ++ ++ Sbjct: 229 LYTSVRKDNVLTMRWEQISFADKQLYLPDTKNGDPHRLPLLDQAVEILKARKEQSDSIWV 288 Query: 258 NNDKQKMNA--TQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWK 314 + + + +K KAG+ H +R+ + A GA + + + Sbjct: 289 FPSETSSSGHLQEPKKAWKRICKKAGIENLRIHDLRRTIPSWMAMTGANQYVIGQLLNHR 348 Query: 315 TVDQAETYTKGA 326 YT+ A Sbjct: 349 DPRSTAVYTRLA 360 >gi|238020277|ref|ZP_04600703.1| hypothetical protein GCWU000324_00153 [Kingella oralis ATCC 51147] gi|237867257|gb|EEP68263.1| hypothetical protein GCWU000324_00153 [Kingella oralis ATCC 51147] Length = 379 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 46/340 (13%), Positives = 105/340 (30%), Gaps = 26/340 (7%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 + + G R G RIR A + +K + Sbjct: 4 YQRKSGVWYIDIRAPSGSRIR-QSTGTQNKQEAQKLHDKLKHDLWQQEKLDQKPLRLWEE 62 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQI--IRKSGDFDYRKITTKHIRSGVES--RKHT 129 + S +S ++ + +T + + + Sbjct: 63 AALRWLHEKQEK-------KSIQSDIYRLRGLSMFKGIYLHNLTRDLVMHSIAKTMQGKA 115 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 ++ ++L +R + E++ I+ + + IR T + ++ + E Sbjct: 116 NATKNRYLALVRAILN-KAANEWLWIDKAPKITLYREPKRRIRWLTPAEAERLIAALPEY 174 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLL 245 F L +GLR S+ Q L K+G I + L + ++ Sbjct: 175 MAD--MATFSLATGLRQSNVINLRWQQLDLQRGVAWVDASESKSGRAIGIALNQTALNVI 232 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATA 304 + + + K + + S ++ AG+ + H +R A+ G Sbjct: 233 QKQMGKHKEYVFTHSKGRRLHSISSRIWRNALAAAGISDFRWHDLRHTWASWLVQKGVPL 292 Query: 305 HELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 + L GW++++ + Y L ++ R ++++D Sbjct: 293 NVLQEMGGWESIEMVQRYAH------LAPEHLHRHAALLD 326 >gi|269792633|ref|YP_003317537.1| integrase family protein [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100268|gb|ACZ19255.1| integrase family protein [Thermanaerovibrio acidaminovorans DSM 6589] Length = 297 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 35/257 (13%), Positives = 78/257 (30%), Gaps = 20/257 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 + + N+ ++ + + + T + + S+ SS + Sbjct: 25 RAFSPNTCQAYRRDLSKYVSFCAERGRDPVPPEVDTVSLFLASLRSQGAAKSSVQRAAAC 84 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLA 195 ++ ++ V +P P + + T+ ++ + + R Sbjct: 85 IKSFSRFLGE---VGEDPGKVPMLPDKPSPMPAILTEGEVLRLLEATAGDAPGDLRDRAM 141 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----ELPDGFMKLLAMTPI 250 E L GLR S+ C ++ L + +++ + G + V E + L + Sbjct: 142 IELLYGCGLRASELCSLTMKDLDLSSGTVRVRGKGDKVRVLPLVGETRSALERYLKVRGT 201 Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGATAHEL 307 + F + + + +A + H +R AT G L Sbjct: 202 HQGPIFQGDRGGPFRREMLWKMIQRRGRQACIAASRLHPHILRHSCATHLLRRGMDLRTL 261 Query: 308 MATYGWKTVDQAETYTK 324 G +V E YT Sbjct: 262 QCLLGHSSVRTTEVYTH 278 >gi|154499119|ref|ZP_02037497.1| hypothetical protein BACCAP_03111 [Bacteroides capillosus ATCC 29799] gi|150271959|gb|EDM99185.1| hypothetical protein BACCAP_03111 [Bacteroides capillosus ATCC 29799] Length = 417 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 48/378 (12%), Positives = 109/378 (28%), Gaps = 61/378 (16%) Query: 17 RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76 + G + +G+R L + Y L + K TL + Sbjct: 18 KDGSYCARYYDRNGQRKYLYNSSLAVLKKEYKDVLKQVS-----TRPVVKTEYTLDEWYA 72 Query: 77 EYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SS 132 ++ K + + ++R+ + + + G + +ITT ++ + K Sbjct: 73 QWIKVYKY-EVRDSTRLQYSHVYTKHVSPALGHYLLTQITTLEVKRFLNDMKKRGFSFEM 131 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 + + LF A+ ++ NP ++ + + R +KE+ F +G+ Sbjct: 132 RNKARIVLLDLFDKAIMDDFAFKNPARGIKVVRDERVEPRVLSKEEQVDFFDTC-KGTFY 190 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQ----------------------NNIFSIKTQKTG 230 F + +GLR + + + Sbjct: 191 EELFTVAVLTGLRPGELFALRWSDVNLKEKYLDVTRTLLYQKLEGDTGKAFHIHPPKTAT 250 Query: 231 TIITVELPDGFMKLLAMTPIGKETF----------------FINNDKQKMNATQFSIWFK 274 ++ V + L K F+ +N++ +S + Sbjct: 251 SLRRVYFDERCKLALMSQFRKKSNISLRETSSPLEGLEDLLFVTKYNTPLNSSLYSSAIQ 310 Query: 275 AKATKAGVNKSA---------HGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324 ++SA H R AT + +A + G T+ YT Sbjct: 311 RIVDLINESRSAVDQFETFSGHCFRHTYATRAFEADVDPKVVQKQLGHATLKMTMDLYTH 370 Query: 325 GADRIRLGIKNSRRISSV 342 + +L + ++ + Sbjct: 371 LFEDKKL--EELTKLDAH 386 >gi|329314712|gb|AEB89125.1| Integrase [Staphylococcus aureus subsp. aureus T0131] Length = 390 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 51/387 (13%), Positives = 106/387 (27%), Gaps = 56/387 (14%) Query: 14 ERTRHGKIIYYFRKGH----GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 R Y G G+ + A A R + + Sbjct: 4 YEKRGNTWRYRISLGKDAETGKYKYISNSGFKRKSDAKHHAEMVERQLRN-GDYIAPSTS 62 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--K 127 T K + ++ S + + V+S + E + I + + + I + V + Sbjct: 63 TFKQVADDWI-SQYANEVKVSSVRAREKAINHAIERFNNKPIQTINKHEYQRFVNDISAQ 121 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---- 183 ++ + + S ++FK+A + + I P ++RPK+K E ++F Sbjct: 122 YSKNYVDSIIASTNMIFKYAYDMKLIRIMPSEGIKRPKKKISVEELEDTEIHKKFLEKDE 181 Query: 184 --------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI----------- 224 F L Y+G+R + + +I Sbjct: 182 LFQFLEVAKNHHSPQNSFELFCTLAYTGMRAGELLALKWSDIDFENNTINITKTYYNPNN 241 Query: 225 --------------------KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264 ++ D + F + + + Sbjct: 242 NKKQFQILTPKTESSIGKISVDPHVIKLLKNYKVDVQDTWKNELYVDNNFVFTDVNGYPL 301 Query: 265 NATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE- 320 + +W KA K + S H R + +AG E+ K ++ Sbjct: 302 VIKKLQLWIKAILKKTDITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMN 361 Query: 321 TYTKGADR-IRLGIKNSRRISSVVDSD 346 Y K + + + ++ V D Sbjct: 362 IYAKITNSYKKDASQKFSKLMENVSKD 388 >gi|193066330|ref|ZP_03047380.1| integrase [Escherichia coli E22] gi|192926037|gb|EDV80681.1| integrase [Escherichia coli E22] Length = 357 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 61/345 (17%), Positives = 111/345 (32%), Gaps = 23/345 (6%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63 LPP + R+ Y G+ L A + + + Sbjct: 9 RRDLPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELLSDSGRKSLI 65 Query: 64 PRKK---PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 R K TL + Y + + + + + S I RK D I+TK + Sbjct: 66 DRIKGGDAITLHVWLDRYERILTERGIRPKTLLDYASKIRAIRRKLPDKPLTDISTKEVA 125 Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + + + +SA +++ +F+ A+ + +VA NP + K + R E Sbjct: 126 AMLNTYVAEGKAASAKLIRSTLVDVFREAIAEGHVATNPVTATRTAKSEVRRSRLTANEY 185 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 ++ + + RLA + + +G R D CR + +N I+ KTG + + L Sbjct: 186 VEIYHAAEPLPIWLRLAMDLAVVTGQRVGDLCRMKWSDINDNHLHIEQSKTGAKLAIPLT 245 Query: 239 DGFMKL---------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NK 284 L ET + ++ S +F +G+ Sbjct: 246 LTIDALNISLADTLQKCREASSSETIIASKHHDPLSPKTVSKYFTKARNASGLSFDGNPP 305 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + H +R SA G K+ A Y R Sbjct: 306 TFHELRSLSA-RLYRNQIGDKFAQRLLGHKSDLMAARYRDSRGRE 349 >gi|303234412|ref|ZP_07321051.1| site-specific recombinase, phage integrase family [Finegoldia magna BVS033A4] gi|302494528|gb|EFL54295.1| site-specific recombinase, phage integrase family [Finegoldia magna BVS033A4] Length = 374 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 44/354 (12%), Positives = 105/354 (29%), Gaps = 41/354 (11%) Query: 15 RTRHGKIIYY----FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 R G ++ + G ++ T A E I + Sbjct: 5 RDESGNKTWFCKFNYTNWKGEKLTKKKRGFLTKKEALKWEQEFLNQHSESI------EMS 58 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRK-- 127 + Y++ + N+ + E+ +Q I+ GD +I I Sbjct: 59 FREFFELYKRDRKPR-IRENTWRTKEAIVNQKILPYIGDLMLNEINNVTIIQWQNELMKI 117 Query: 128 -------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDM 179 ++P+ + + A R + N V K + + WT+++ Sbjct: 118 KDKNGKNYSPTYLRTIHAQLSSILNHACRYYNLKTNVARDVGSMGEKEADEMLFWTQDEY 177 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------- 232 ++F + + AFE L + GLR + + ++K ++ Sbjct: 178 ERFIEAIKDKPESFYAFELLYWCGLRMGELLALTQEKFDFERHTLKIDESLQRIDGKNVI 237 Query: 233 ---------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 T+ +P+ + + + + + K+ V Sbjct: 238 TAPKTKKSIRTIVMPEFLTDEIKEYIDSFYKLKSKDLIFNFSKSYLHHEMDRGSKKSQVK 297 Query: 284 K-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIK 334 + H +R ++ + G +A + G +++D Y + + + + Sbjct: 298 RIRIHDLRHSHVSLLIELGFSATAIADRVGHESIDITYRYAHLFPSKQKEMALS 351 >gi|294677399|ref|YP_003578014.1| tyrosine recombinase XerD [Rhodobacter capsulatus SB 1003] gi|294476219|gb|ADE85607.1| tyrosine recombinase XerD [Rhodobacter capsulatus SB 1003] Length = 318 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 38/274 (13%), Positives = 80/274 (29%), Gaps = 34/274 (12%) Query: 90 NSRISFESYFDQIIRK--SGDFDYRKITTKHIRSGVESRKHTP-SSAIQFLTSMR--VLF 144 N+ ++ + + D + + + + + A + ++ + Sbjct: 26 NTIAAYGRDLSDFLDFTTAKGLDLITLDRAAVEDWLVRLEAEGLAKATRARAALGGEAIL 85 Query: 145 -KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-------WSEGSQPRLAF 196 + + P L + P + + + E+++ +E + R Sbjct: 86 PASPMTRAGGRTTPTLQISGPGKAQRLPKTLSIEEVEALLEAGRDQGRSPAEQIRNRCLM 145 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMT------- 248 E L +G+R S+ V + N + K V L + LA Sbjct: 146 ELLYATGMRVSELVGLPVAAARGNPAMLMVRGKGDKERMVPLSAPAREALAAWLATRDAA 205 Query: 249 ----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSAT 295 P + F + + + F K A AG++ + H +R AT Sbjct: 206 EEAARIARRLPPSRFLFPSSGKEGHLTRQGFHALLKDIALAAGLDPARVTPHVLRHAFAT 265 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 GA + G + E YT + Sbjct: 266 HLLQGGADLRVIQTLLGHADLSTTEIYTHVLEER 299 >gi|324115571|gb|EGC09510.1| phage integrase [Escherichia coli E1167] Length = 387 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 52/371 (14%), Positives = 105/371 (28%), Gaps = 60/371 (16%) Query: 21 IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK 80 F +G+R + A T + + + Sbjct: 10 WYASFTLPNGKRFKQSL-GTKDKRQATELHDKLKAEAWRVSKLGEIPDMTFEEACVRWLE 68 Query: 81 SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---------- 130 S +S ++ R IT I S ++ + Sbjct: 69 EKAHKK----SLDDDKSRIGFWLQHFAGMQLRDITESKIYSAMQKMTNRRHEENWKLRAE 124 Query: 131 -------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 ++ L+ ++ L + A +E+ ++ ++ P+ K + I Sbjct: 125 ACRKKGKPVPEYTPKPASVATKATHLSFIKALLR-AAEREWKMLDKAPILKVPQPKNKRI 183 Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQ 227 R + Q+ E + EF L +GLR S+ Q + + + Sbjct: 184 RWLEPHEAQRLIDECPEPLKS--VVEFALATGLRRSNIINLEWQQIDMQRRVAWINPEES 241 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------------FSIWFKA 275 K+ I V L D ++L + + + +KA Sbjct: 242 KSNRAIGVALNDTACRVLKKQIGNHHRWVFVYKESCTKPDGTKAPTVRKMRYDANTAWKA 301 Query: 276 KATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334 +AG++ H +R A+ AG L GW++++ Y L Sbjct: 302 ALRRAGIDDFRFHDLRHTWASWLVQAGVPLSVLQEMGGWESIEMVRRYAH------LAPN 355 Query: 335 NSRRISSVVDS 345 + + +DS Sbjct: 356 HLTEHARQIDS 366 >gi|300921984|ref|ZP_07138130.1| site-specific recombinase, phage integrase family [Escherichia coli MS 182-1] gi|300421654|gb|EFK04965.1| site-specific recombinase, phage integrase family [Escherichia coli MS 182-1] Length = 387 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 52/371 (14%), Positives = 105/371 (28%), Gaps = 60/371 (16%) Query: 21 IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK 80 F +G+R + A T + + + Sbjct: 10 WYASFTLPNGKRFKQSL-GTKDKRQATELHDKLKAEAWRVSKLGEIPDMTFEEACIRWLE 68 Query: 81 SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---------- 130 S +S ++ R IT I S ++ + Sbjct: 69 EKAHKK----SLDDDKSRIGFWLQHFAGMQLRDITESKIYSAMQKMTNRRHEENWKLRAE 124 Query: 131 -------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 ++ L+ ++ L + A +E+ ++ ++ P+ K + I Sbjct: 125 ACRKKGKPVPEYTPKPASVATKATHLSFIKALLR-AAEREWKMLDKAPIIKVPQPKNKRI 183 Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQ 227 R + Q+ E + EF L +GLR S+ Q + + + Sbjct: 184 RWLEPHEAQRLIDECPEPLKS--VVEFALATGLRRSNIINLEWQQIDMQRRVAWINPEES 241 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------------FSIWFKA 275 K+ I V L D ++L + + + +KA Sbjct: 242 KSNRAIGVALNDTACRVLKKQIGNHHRWVFVYKESCTKPDGTKAPTVRKMRYDANTAWKA 301 Query: 276 KATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334 +AG++ H +R A+ AG L GW++++ Y L Sbjct: 302 ALRRAGIDDFRFHDLRHTWASWLVQAGVPLSVLQEMGGWESIEMVRRYAH------LAPN 355 Query: 335 NSRRISSVVDS 345 + + +DS Sbjct: 356 HLTEHARQIDS 366 >gi|32472856|ref|NP_865850.1| integrase [Rhodopirellula baltica SH 1] gi|32444093|emb|CAD73535.1| integrase [Rhodopirellula baltica SH 1] Length = 436 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 37/289 (12%), Positives = 74/289 (25%), Gaps = 29/289 (10%) Query: 80 KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQ 135 + H A + + Q+ +G ++ +H+R R S Sbjct: 149 EDLHLTGKAKRTHDGYIRAVRQLSDFAGCSP-DQVNEQHVRQFFLHLKNDRNFAYGSLRV 207 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-SFWSEGSQPRL 194 + ++ F ++++ I + T T E + + S ++ Sbjct: 208 AFSGIKFFFTHTCKRDWEIIKMLK----LQNITTLPEVLTIEQVHELIGSATTQRMFVYF 263 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254 + L L + + + + K V LP ++LL Sbjct: 264 WTVYSLGLRLNEALHLQVSDIDAERGWVHVHRGKGAKDRYVPLPTTTVRLLRNYWASHRH 323 Query: 255 FFINND----------------KQKMNATQFSIWFKAKATKA--GVNKSAHGVRKFSATI 296 M+ T K G S H +R AT Sbjct: 324 PSFLFPADGRKHDLAKDGVSEATTPMSETAVQGAMKQITKNLRFGKKVSIHTLRHSYATH 383 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRL-GIKNSRRISSVVD 344 +AG + G ++ Y D + R+ + Sbjct: 384 LLEAGVGLKVIQKYLGHSSLQTTMVYLHLTDTAEANAREEIERLFGSLP 432 >gi|326407220|gb|ADZ64291.1| integrase [Lactococcus lactis subsp. lactis CV56] Length = 403 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 49/377 (12%), Positives = 110/377 (29%), Gaps = 63/377 (16%) Query: 10 FVTKERTRHGKIIYYFRKG-------HGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62 + + +T+ G++ Y R G+++R + + + + Sbjct: 5 NIKEYKTKSGEVRYILRGAYIGTDVLTGKQVRTSITGRTKKDIKVKLSRLQNEFIKNGCT 64 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTK---- 117 K T +++ + + + E +I G + K+TT Sbjct: 65 KKIKVLKTFDEVVAAWFDFYKINRKSA-TVKQTEKNLRLYLIPAFGKYKIDKLTTAILQH 123 Query: 118 --HIRSGVESRKHTPSSAI---------QFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 +I + + S+ A + T + + K+A+ ++ NPCL+V P Sbjct: 124 QINIWATIASKPLNGRQARKKGEMSDYKRLYTIINRIMKYAISNGLISSNPCLTVLMPNV 183 Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY-----------SGLRCSDSCRAGVQ 215 K E + K + + + + ++ + +GLR ++ Sbjct: 184 KVESTKKEIKFFTKSQLQSLFDYLDNQASPQWKMRLLRNLLPFLASTGLRIGEAVALSWS 243 Query: 216 HLQNNIFSIKTQKTGTI--------------------------ITVELPDGFMKLLAMTP 249 + ++ KT ++ + + L Sbjct: 244 DIDFKQGTVTVSKTVNDSNQIQLSPKTETSNRTIDIDKSTLNLLSKWQLEIKKEFLKYGN 303 Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELM 308 + F N + +N+ G+ HG R AT+ AG + + Sbjct: 304 PNQPLLFPNINGSVLNSRLLRNTLLDCFENVGLPNIGFHGFRHTHATLCLSAGMSYKAIQ 363 Query: 309 ATYGWKTVDQAE-TYTK 324 G T+ Y Sbjct: 364 TRLGHSTLQMTMDIYAH 380 >gi|323143041|ref|ZP_08077746.1| phage integrase, N-terminal SAM-like domain [Succinatimonas hippei YIT 12066] gi|322417182|gb|EFY07811.1| phage integrase, N-terminal SAM-like domain [Succinatimonas hippei YIT 12066] Length = 307 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 40/274 (14%), Positives = 94/274 (34%), Gaps = 29/274 (10%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQII-------------RKSGDFDYRKITTKHIRSGV 123 Y + N+ S++ + + + G+ + R + + Sbjct: 13 AYLSNEKRSG--PNTVASYDRVLRKALVSLKYNFPQLKSWSEIGEKEMRFLLKEF-NFSF 69 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 ++ + + S + ++ FK+ ++++ ++ NPC + PK + + + ++ Q Sbjct: 70 DAERLSSVSVAHDIYALSSFFKFLIKKKKLSSNPCSLIHAPKVRKPLPKVLSSNEIDQLF 129 Query: 184 SFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPD 239 + + R E L SGLR + + L ++ G +V + Sbjct: 130 TVDPSSPKEIRDRAIAELLFSSGLRVGELVALNLGDLDETAQEVRVFGKGGKERSVPVGS 189 Query: 240 GFMKLLAMTPIGKETFFI-------NNDKQKMNATQFSIWFKAKATKAG--VNKSAHGVR 290 + + + ++ F N ++M A+K+G + S H +R Sbjct: 190 QALNWIRIYLKVRDAFNPEDTALFLNRFGRRMTTRAVQQNLDKLASKSGLSIKISPHKLR 249 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324 AT GA + G ++ + YT Sbjct: 250 HSFATELLGNGADLRMVQEMLGHSSLAATQVYTH 283 >gi|312876873|ref|ZP_07736850.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A] gi|311796388|gb|EFR12740.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A] Length = 319 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 26/272 (9%), Positives = 72/272 (26%), Gaps = 14/272 (5%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 + + + + + +E + ++ D + S+ P Sbjct: 14 WEDALQLFLSYKKAQGRSDLTIRDYEIHIRAFFKRYPDCFNDTQKLRKCLIEYLSQPMKP 73 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM---QQFKSFWS 187 + + +++ W V + + NP + K + + Q Sbjct: 74 VTYNLRMKNLKAFLSWCVEEGIIPTNPIAKFKPRKTDDRIVEIDIETLQKLLQLPDRKTF 133 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT----IITVELPDGFMK 243 G + L +G+R ++ H + + + Sbjct: 134 AGLRDYALMLLTLDTGIRPKEAFSLLKDHFDFKNMQVVIPSDVAKTRVSRVLPISPVTAN 193 Query: 244 LL-------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296 + F + + +N +++ + + + GV + +R A + Sbjct: 194 AIKKLISSRHPQWDDSVPVFCSVTGKPLNRYRWNERMREYSKQLGVKIKPYDLRHMFALL 253 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADR 328 G L G T++ + Y + Sbjct: 254 YLKNGGYELSLQKIMGHTTLEMTKKYVHFTQQ 285 >gi|326402863|ref|YP_004282944.1| tyrosine recombinase XerC [Acidiphilium multivorum AIU301] gi|325049724|dbj|BAJ80062.1| tyrosine recombinase XerC [Acidiphilium multivorum AIU301] Length = 313 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 35/276 (12%), Positives = 77/276 (27%), Gaps = 28/276 (10%) Query: 85 GSLAVNSRISFESYFDQII----RKSGDFD----YRKITTKHIRSGVESRKHTP---SSA 133 A + ++ + + + R G ++ R+ + ++ Sbjct: 28 RRAAALTVSTYGADLAEFLGFVTRHIGAEPTGADLAALSLADFRAWLAKAASDGVGNATR 87 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-QP 192 + L+++R F+W ++ + + PK + R T D + + P Sbjct: 88 AKKLSAVRSFFRWLRQRHGMINEAPGLLRTPKSRRPLPRALTAPDAAAVVDSLGDDAASP 147 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252 LA L R N ++ + LL + Sbjct: 148 ALAARDTALMALLYGAGLRIHEALGLNIGDLPPEGAPLSVRGKGGRQRIVPLLPVLRREI 207 Query: 253 ETFFINNDKQ-------------KMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATIS 297 ++ ++ ++N + G+ + H +R AT Sbjct: 208 ASWLRHHPAPTPDAPLFLGARGARLNPGVVQRRLRDFRRLNGLPEHATPHALRHSFATHL 267 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 GA + G ++ + YT D RL Sbjct: 268 LANGADLRAIQELLGHASLSTTQRYT-AVDADRLMA 302 >gi|313637890|gb|EFS03211.1| tyrosine recombinase XerC [Listeria seeligeri FSL S4-171] Length = 291 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 29/269 (10%), Positives = 68/269 (25%), Gaps = 19/269 (7%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 I +Y + +L+ N+ ++ K + + S+A Sbjct: 7 YIEKYIDFLSYKNLSSNTIKKSNVVLTNFFKERNSISITKNEQYEYIEMLLN-TVKKSTA 65 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193 ++ + + + +I KR + + Sbjct: 66 YDYIRILNKFYDYIHTFVDSSIANLFENVSFKRTPAQNISVLYSEEILELYERIKNDNRV 125 Query: 194 LAFEFLLY-----SGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLA 246 A++ ++ +G+R S+ + + N I + I KL+ Sbjct: 126 TAYQEFIFDFLFSTGIRVSELSSIKINLIDLENRTILITGKGNKERIIFYNDKLEHKLIR 185 Query: 247 MTPIGKETFFINNDKQ-----------KMNATQFSIWFKAKATKAGVNKSAHGVRKFSAT 295 + + N + +N H +R AT Sbjct: 186 FLKLRHQIMEFNKKYHSYLFIKLTTGKPVTNNFIYYEIVKIGKLYDINLHPHTLRHSFAT 245 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324 + G + G ++ + YT Sbjct: 246 NLLENGCDIRYIQEFLGHSSILTTQRYTH 274 >gi|293372242|ref|ZP_06618627.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|292632684|gb|EFF51277.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] Length = 436 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 43/302 (14%), Positives = 93/302 (30%), Gaps = 26/302 (8%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGV 123 T+ L Y + +L ++ + + ++ D+D I + Sbjct: 126 TISTLFD-YHEIMEKKNLRASTFVGYHVTKKHLLNFIRIKYHVSDYDLTAIDKAFVYEFY 184 Query: 124 ESRK---------HTPSSAIQFLTSMRVLFKWAVRQEYVAINP-CLSVERPKRKTEGIRP 173 + + A++ + + + A++ E+++ NP CL + + G Sbjct: 185 AYLQGYKREGETVCAVNGALKHIQRFKKVMNVALQNEWISRNPVCLLNAKKTKVERGFLS 244 Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233 + + S R F F +Y+GL D +++ I Sbjct: 245 EKELKSIEEVPLPVNLSIVRDVFVFAVYTGLSFVDISNLTNENINVGIDKSLWLNYYRQK 304 Query: 234 TVELPD-----GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286 T + +L + N+ + + K A +AGV K + Sbjct: 305 TDIHAMLPLLQPAVCILKRYEAYHKGKRTNHVFPVPPNQVANRYLKKVAKEAGVEKNITF 364 Query: 287 HGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIRL-GIKNSRRISSVVD 344 H R AT G + G ++ + Y K D + + + + + + Sbjct: 365 HMARHTFATTITLSHGIPIETVSKMLGHTSIKTTQIYAKILDTKVMDDMAALKELYTRKE 424 Query: 345 SD 346 S Sbjct: 425 SQ 426 >gi|312880385|ref|ZP_07740185.1| integrase family protein [Aminomonas paucivorans DSM 12260] gi|310783676|gb|EFQ24074.1| integrase family protein [Aminomonas paucivorans DSM 12260] Length = 309 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 56/299 (18%), Positives = 109/299 (36%), Gaps = 24/299 (8%) Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 RK TL ++ EY LA ++ + Q +S D R + ++ Sbjct: 8 RKVLPTLSQMVEEYLDE-RSLDLAPSTVKNQGYILRQFAAQSQDEGNRADAVRLLQH--- 63 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER----PKRKTEGIRPWTKEDMQ 180 +P+ + +++ F W + Q Y NP + K ++ + Sbjct: 64 --AKSPNVHNLYRATLKCFFDWCISQGYRTDNPGEGIRTKKGTHKFIDTPVQALDSFIRE 121 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF----SIKTQKTGTIITVE 236 F + G + + A FL+ +G R +++ + + + +T KT T TV Sbjct: 122 GFDTTTYVGLRDKAAVLFLIDTGARPNEAWQLRPEDVDLVQGIALLRAETTKTRTPRTVF 181 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQ-------KMNATQFSIWFKAKATKAGVNKSAHGV 289 KLL + ++ + M +T+F + + G+N + + + Sbjct: 182 FSKPTAKLLNTLLGNRPDWWGPDVPIFAASTGSPMTSTEFGHRLRPVTARFGLNLTVYSL 241 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 R AT G +A EL G + Y A+ R ++ + R +S V++ P Sbjct: 242 RHIFATNFLRGGGSALELQRILGHSNMTMTTRY---ANLNREDLQEAHRHASPVNALFP 297 >gi|300902550|ref|ZP_07120527.1| site-specific recombinase, phage integrase family [Escherichia coli MS 84-1] gi|301302005|ref|ZP_07208138.1| site-specific recombinase, phage integrase family [Escherichia coli MS 124-1] gi|300405363|gb|EFJ88901.1| site-specific recombinase, phage integrase family [Escherichia coli MS 84-1] gi|300842557|gb|EFK70317.1| site-specific recombinase, phage integrase family [Escherichia coli MS 124-1] gi|315253725|gb|EFU33693.1| site-specific recombinase, phage integrase family [Escherichia coli MS 85-1] Length = 387 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 54/376 (14%), Positives = 108/376 (28%), Gaps = 61/376 (16%) Query: 17 RHGK-IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75 R G+ F +G+R + A T + Sbjct: 5 RRGEIWYASFTLPNGKRFKQSL-GTKDKRQATELHDKLKAEAWRVSKLGEIPDITFEEAC 63 Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP----- 130 + + S +S ++ R IT I S ++ + Sbjct: 64 IRWLEEKAHKK----SLDDDKSRIGFWLQHFAGMQLRDITESKIYSAMQKMTNRRHEENW 119 Query: 131 ------------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 ++ L+ ++ L + A +E+ ++ ++ P+ Sbjct: 120 RLRAEACRKKGKPVPEYTPKPASVATKATHLSFIKALLR-AAEREWKMLDKAPIIKVPQP 178 Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IF 222 K + IR + Q+ E + EF L +GLR S+ Q + Sbjct: 179 KNKRIRWLEPHEAQRLIDECPEPLKS--VVEFALATGLRRSNIINLEWQQIDMQRRVAWI 236 Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------------FS 270 + + K+ I V L D ++L + + + Sbjct: 237 NPEESKSNRAIGVALNDTACRVLKKQIGNHHRWVFVYKESCTKPDGTKAPTVRKMRYDAN 296 Query: 271 IWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +KA +AG++ H +R A+ AG L GW++++ Y Sbjct: 297 TAWKAALRRAGIDDFRFHDLRHTWASWLVQAGVPLSVLQEMGGWESIEMVRRYAH----- 351 Query: 330 RLGIKNSRRISSVVDS 345 L + + +DS Sbjct: 352 -LAPNHLTEHARQIDS 366 >gi|294619699|ref|ZP_06699115.1| prophage Lp3 protein 1, integrase [Enterococcus faecium E1679] gi|291594082|gb|EFF25540.1| prophage Lp3 protein 1, integrase [Enterococcus faecium E1679] Length = 401 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 54/372 (14%), Positives = 115/372 (30%), Gaps = 47/372 (12%) Query: 1 MTPSLRLPPFVTKERTRHGKIIYYFR--------KGHGRRIRLPYPHESTFIPAYMSALT 52 M + + K T+ G+ Y F G R+ + L Sbjct: 1 MAKKE-IDKRIKKHLTKKGEEKYQFSLYLGVDPLTGKKRKTTRRGFSTPLAAERALKRLE 59 Query: 53 GSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDY 111 ++ S +K +++ + ++ ++ ++ S + FD I++ GD Sbjct: 60 TDIQEKGLQASTAQKSKKFEYVYGLWFENYK-KTVKESTWSSTKQIFDTHILKVFGDKFI 118 Query: 112 RKITTKHIRSGVESRKHT-PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK----- 165 KI + V + + P + +F +A + + NP V P+ Sbjct: 119 DKIDVFFCQEAVNTWSDSHPKIFKKIKNYTSNVFDYAASLQIITSNPMKLVSIPRGEALD 178 Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL-YSGLRCSDSCRAGVQHLQNNIFSI 224 + + I +TKE++ +F R F LL ++G+R ++ + ++ Sbjct: 179 IEDKNIEFYTKEELIEFLEAIRNDDDERYLFFSLLAFTGIRKGEAFALTWSDIDFKSKTL 238 Query: 225 KTQKTGTI-----------------ITVELPDGFMKLLAMTPIGK-----------ETFF 256 KT T + L + + LL I Sbjct: 239 NINKTVTRGYQGRLIVNTPKSKSGKRKIYLDNDLISLLRKYYIKNKTIVTIQSENLIFHH 298 Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTV 316 + + + + HG R A++ ++GA+ ++ G + Sbjct: 299 DGLLYNPTVSRSWLNVIYKHHPELTKRITTHGFRHTHASLLFESGASLKDVQERLGHADI 358 Query: 317 DQA-ETYTKGAD 327 YT + Sbjct: 359 QTTSNIYTHVTE 370 >gi|150402206|ref|YP_001329500.1| phage integrase family protein [Methanococcus maripaludis C7] gi|150033236|gb|ABR65349.1| phage integrase family protein [Methanococcus maripaludis C7] Length = 282 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 31/266 (11%), Positives = 76/266 (28%), Gaps = 15/266 (5%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 + Y + L+ ++ S++ + + +R + + + K T + Sbjct: 3 DEISKRYLEFC--TGLSKSTINSYKYGLRTFQKY-ANKRWRDVMVNDVILFYTNHKATKN 59 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 S + L ++ + W + ++Y+ NP + R+ + R + + + Sbjct: 60 SKMSVLGTVSRFYDWGIEEKYLLDNPVKKFLKTLRREKKERNYLTTSQANYLLSNIKRYD 119 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ------------NNIFSIKTQKTGTIITVELPD 239 + F+L +G+R S+ VQ + + Sbjct: 120 YYVITMFILKTGVRISELVNLKVQDVDLDSKIAFIGSGKGKKDRYVFFDRDLAFHLREYI 179 Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISAD 299 + + T + + A + + H +R AT + Sbjct: 180 KERSYRDPKCDNLFLGVYRGHFSQRSLTLYKEYINEVAPNIHIRITPHILRHTFATSMLE 239 Query: 300 AGATAHELMATYGWKTVDQAETYTKG 325 G L G + + Y Sbjct: 240 RGIDLKSLSLILGHEDLSTTSIYLHK 265 >gi|322378161|ref|ZP_08052646.1| prophage L54a, integrase [Streptococcus sp. M334] gi|321280891|gb|EFX57906.1| prophage L54a, integrase [Streptococcus sp. M334] Length = 377 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 53/370 (14%), Positives = 121/370 (32%), Gaps = 48/370 (12%) Query: 18 HGKIIYYFRK-----GHGRRIRLPYPHESTFIPAYMSAL----TGSTPKREYINSPRKKP 68 +GK YY + +++ + ++ L ++ K Sbjct: 8 NGKYRYYEKYFDLEENKWKQVSITLTSKTRQAQKQARILLDEKIEKKREKIEKKKEVVKD 67 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128 T+K EY K L ++ S + +RK ++ +T+ +++ + + Sbjct: 68 ITVKQAYEEYLKIRE-TELKRSTFKSQKYTIIGEVRKLENYLLVDVTSHIVQNILLELEC 126 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-------RPWTKEDMQQ 181 + + + FK+ + Y+ NP V PKRK + T+ M Q Sbjct: 127 SAVHRKNKKVLLNLFFKYYLDIGYIMENPVEKVVLPKRKKNVKEIRRKQNKYLTRVQMFQ 186 Query: 182 FKS---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------- 231 + + + + RL EF+ +GLR + + + +++ + T Sbjct: 187 YLNFLEKEEKNQRVRLIVEFMYLTGLRFGEVLALTIDDIDFENKTLEVKHTLHTSGSKAE 246 Query: 232 -----------IITVELPDGFMKLLAMT--PIGKETFFINNDKQKMNATQFSIWFKAKAT 278 V + + + ++ G+ F + T F+ + K+ Sbjct: 247 IFLDSPKSLASYRVVGISNRVVSIIKEYLLLEGEGRFIFTKNGTPFMITGFNNFLKSSFK 306 Query: 279 KAGVNK------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRL 331 K+ + K + H R ++ A+ +M G YT +++ Sbjct: 307 KSKIEKEEDFVLTTHVFRHSHISLLAELEVPIKAIMERVGHTNEKMTLGVYTHVTQQMKF 366 Query: 332 GI-KNSRRIS 340 I + ++ Sbjct: 367 NITEKLDKLD 376 >gi|295107446|emb|CBL04989.1| Site-specific recombinase XerD [Gordonibacter pamelaeae 7-10-1-b] Length = 356 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 46/343 (13%), Positives = 101/343 (29%), Gaps = 40/343 (11%) Query: 14 ERTRHGKIIY---YFRKGHG-RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 + + Y Y+R G +R + S A + + Sbjct: 4 YKDDNNGTYYVQCYYRDARGSKRHKTKRGFSSEVEAAVW-------ESQFKSLNGGAMDM 56 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR-- 126 T + Y + ++ I+ E + +++ GD + + Sbjct: 57 TFSEFVEVYASEVKPR-IREHTWITKEYIINDKLVPFFGDMRMCDVRPIDVIRWQNELTE 115 Query: 127 -------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-GIRPWTKED 178 P+ + +F A R + NP V++ K ++ WTK++ Sbjct: 116 HRDADGKPWAPTYLRTVNNQLNAIFNHAERYYGLTDNPVRRVDKIGSKKGGEMQFWTKDE 175 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------ 232 +F + AFE L ++G+RC + ++ K+ Sbjct: 176 YLRFSEAVMDKPLSFHAFELLYWTGIRCGELLALTPSDFMLESSRLRINKSYQSLHGVDT 235 Query: 233 ----------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 T+ +P +A ++ + + + + +GV Sbjct: 236 VTDPKTPKSVRTIVMPAFLRDEMAEFIEMRDDVAPDERLFAVTKHFLAHEMERGCKASGV 295 Query: 283 NK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + H +R ++ + G +A + G + VD Y Sbjct: 296 KRIRIHDIRHSHVSLLIEMGFSALAIAERMGHEAVDITYRYAH 338 >gi|145300732|ref|YP_001143573.1| phage integrase [Aeromonas salmonicida subsp. salmonicida A449] gi|142853504|gb|ABO91825.1| phage integrase [Aeromonas salmonicida subsp. salmonicida A449] Length = 353 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 51/333 (15%), Positives = 95/333 (28%), Gaps = 29/333 (8%) Query: 11 VTKERTRHGKIIY---YFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYINSPRK 66 V K+ K GRRIR + K S + Sbjct: 2 VVKKVDGKTKPWLADLRPDGDGGRRIRKSFMTKGEALAWERHQLTNKPWLKEPEPESEKH 61 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 + L L+ + H +LA R + + + T++H + E R Sbjct: 62 EQRRLLDLVHIWFG-RHGQTLADGDRR--RDKLVWLCEALDNPIATEFTSEHFSAYRERR 118 Query: 127 ------------KHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRP 173 K TP++ + ++ +F R + NP + + K + + Sbjct: 119 LAGELYVPGQCKKVTPTTINREQLYLQAVFNELARLGVWNGGNPLSDLRQYKVQESELAY 178 Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233 ++++++Q E L L +G R S+ + + + K Sbjct: 179 LSQDEIEQLLDAGKEQRDLWLVVMLCLSTGARWSEIEKVSRSQVGMGRITFTKTKGKRNR 238 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFS 293 TV + + +L F + K V +S H +R Sbjct: 239 TVPVAPWLLAMLPKRTGRLFDDCYAE---------FEKAIRRANIKLPVGQSTHVLRHTF 289 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGA 326 A+ G L G + Y+ A Sbjct: 290 ASHFMMNGGNILVLQRILGHTDIKMTMRYSHFA 322 >gi|29349952|ref|NP_813455.1| transposase [Bacteroides thetaiotaomicron VPI-5482] gi|29341863|gb|AAO79649.1| transposase [Bacteroides thetaiotaomicron VPI-5482] Length = 308 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 34/303 (11%), Positives = 90/303 (29%), Gaps = 37/303 (12%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH 128 T++ + +++ + ++ ++ + I+ G+ D + + ++ V + Sbjct: 5 TIREIAVAWKEYKRPY-VKQSTMAAYVLILENHILPTFGECD--SLHEEIVQDYVLRKIE 61 Query: 129 TP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + S L ++++ K+ V+ E++ + + + + ++ + Sbjct: 62 SGLSVKSVKDILIVLKMVMKFGVKNEWMDYYEWDIKYPTISTNKELEVLSVANHKKVLNH 121 Query: 186 WSEG-SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 S L L +GLR + C + +I +T I + Sbjct: 122 IQNHFSFAGLGIYISLCTGLRIGEVCALKWSDINTMDGTITVNRTIERIYIIDGTQKHTE 181 Query: 245 LAMTPIGKETFFINNDK--------------------------QKMNATQFSIWFKAKAT 278 L + + + ++ Sbjct: 182 LVINTPKTQNSCREIPMTKELFAMMKPLKKVVNDDFYILTNAEYPTEPRTYRNYYTKLME 241 Query: 279 KAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLGIKN 335 K G+ K HG+R AT +AG + G + + Y ++ + I Sbjct: 242 KLGIPKLKYHGLRHSFATRCIEAGCDYKTVSVLLGHSNISTTLDLYVHPNMEQKKRCIAK 301 Query: 336 SRR 338 + Sbjct: 302 VFK 304 >gi|325453347|gb|ADZ13628.1| integrase [Cronobacter phage ENT47670] Length = 387 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 49/375 (13%), Positives = 104/375 (27%), Gaps = 60/375 (16%) Query: 17 RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76 R F G+R + A T + Sbjct: 6 RGETWYASFTLPDGKRFKQSL-GTKDKRQATELHDKLKAEAWRVSKLGETPDMTFEEACV 64 Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP------ 130 + + S +S ++ + IT I + ++ + Sbjct: 65 RWLEEKAHKK----SLDDDKSRIGFWLQHFAGMQLKNITETRIYNAIQKMTNRRHEENWK 120 Query: 131 -----------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167 ++ L+ ++ L + A +E+ ++ V+ P+ K Sbjct: 121 LREEALRKKGKPVPPYVPRPAATATKATHLSFIKALLR-AAEREWKMLDKAPIVKVPQPK 179 Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFS 223 + IR + ++ + + EF L +GLR S+ Q + Sbjct: 180 NKRIRWLEPHEAKRLIDECPDPLKS--VVEFALATGLRRSNIINLEWQQIDMQRRVAWIH 237 Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------------FSI 271 + K+ I V L D ++L + + + Sbjct: 238 PEQSKSNQAIGVALNDTACRVLKRQIGNHHKWVFVYKESCTRPDGTKVPTVRKMRYDANT 297 Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 ++A +AG+ + H +R A+ AG L GW++++ Y Sbjct: 298 AWRAALKRAGIEDFRFHDLRHTWASWLVQAGVPISVLQEMGGWESIEMVRRYAH------ 351 Query: 331 LGIKNSRRISSVVDS 345 L + + +DS Sbjct: 352 LAPNHLTEHAKQIDS 366 >gi|307269737|ref|ZP_07551067.1| phage integrase, SAM-like domain protein [Enterococcus faecalis TX4248] gi|306513847|gb|EFM82449.1| phage integrase, SAM-like domain protein [Enterococcus faecalis TX4248] Length = 301 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 43/281 (15%), Positives = 106/281 (37%), Gaps = 24/281 (8%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSG---VES 125 + +I E+ + + +++S + ++ KHI+S ++ Sbjct: 3 WEDIILEFCMDITVRGFSKITIKNYKSKLRNTANFFKSINVEPLQLEKKHIKSWIIDMQE 62 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 ++ S+ ++ ++ LF + + ++Y+ NP + +ER K + + I P +++Q + Sbjct: 63 KEMQASTINVSVSRLKKLFDYMLIEKYIDYNPFVDIERLKEQRKVIYPLNDYEIKQMLTV 122 Query: 186 WSEGSQPRLAF------EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239 + +A ++ GLR S+ C + + NN I+ K V + Sbjct: 123 AKKHPYKHIAQRNVVILMLMIECGLRISEVCEIRDEDIMNNQIIIRKSKNNKDRAVAVSP 182 Query: 240 GFMKLLAMTPIGKETFF---------INNDKQKMNATQFSIWFKAKATKAGVN----KSA 286 K + K+ + ++N +K+N + + + S Sbjct: 183 ILKKEIIKYQRIKKRKYGLLEGNLFIVSNLGKKLNEKSIWQIMQEIKKQIDIRDCVRFSG 242 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 H +R A++ G + L G +++ + Y + + Sbjct: 243 HTLRHTYASMQLRNGLDIYTLSLNMGHSSIEMTQRYVQTLN 283 >gi|254499439|ref|ZP_05112100.1| putative phage integrase family protein [Legionella drancourtii LLAP12] gi|254351338|gb|EET10212.1| putative phage integrase family protein [Legionella drancourtii LLAP12] Length = 326 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 50/302 (16%), Positives = 105/302 (34%), Gaps = 33/302 (10%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVES--- 125 L++ ++ + L+ +S S+ + + DF +IT +R+ E Sbjct: 27 LLNSFKATLEQQDLSESSISSYIQGINVFTTWALDFYQQEVCLLEITANDLRAYREYVSK 86 Query: 126 -RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR-KTEGIRPWTKEDMQQFK 183 + PS+ + ++ + WA + + NP ++ KR T K+++ Sbjct: 87 ILRRKPSTINHHIQVLKRFYAWAAKTNLIPDNPASAIHFVKRATTTKPNALNKDEIHALL 146 Query: 184 SF-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIIT 234 + + LL SGLR + ++ + ++ K Sbjct: 147 RASGLSTHGLALRNYAIVQLLLQSGLRVGELNNLLMKDVVIRERSGCVNVVDGKGRKHRE 206 Query: 235 VELPDGFMKLLAMTPIGKE------TFFINNDKQKMNATQFSIWFKAKATKAGVNK---S 285 + L + L ++ F ++ + A +A + + + Sbjct: 207 IPLNSIARRALTRYLETRDSLGSDDILFTTKRGEQGTIRALQALISSLAKRANITRINVT 266 Query: 286 AHGVRKFSATISADA--GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343 AH +R AT A G EL G ++V+ YTK A + +L ++ R + Sbjct: 267 AHTLRHTFATQFLQANPGC-LVELAMLMGHESVNTTAIYTK-ASKEKLA-EHMERSGVSI 323 Query: 344 DS 345 D+ Sbjct: 324 DA 325 >gi|4490352|emb|CAB38715.1| integrase-like protein [Enterobacteria phage H19J] Length = 357 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 61/345 (17%), Positives = 111/345 (32%), Gaps = 23/345 (6%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63 LPP + R+ Y G+ L A + + + Sbjct: 9 RRDLPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELLSDSGRKSLI 65 Query: 64 PRKK---PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 R K TL + Y + + + + + S I RK D I+TK + Sbjct: 66 DRIKGGDAITLHVWLDRYERILTERGIRPKTLLDYASKIRAIRRKLPDKPLTDISTKEVA 125 Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + + + +SA +++ +F+ A+ + +VA NP + K + R E Sbjct: 126 AMLNTNVAEGKAASAKLIRSTLVDVFREAIAEGHVATNPVTATRTAKSEVRRSRLTANEY 185 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 ++ + + RLA + + +G R D CR + +N I+ KTG + + L Sbjct: 186 VEIYHAAEPLPIWLRLAMDLAVVTGQRVGDLCRMKWSDINDNHLHIEQSKTGAKLAIPLT 245 Query: 239 DGFMKL---------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NK 284 L ET + ++ S +F +G+ Sbjct: 246 LTIDALNISLADTLQKCREASSSETIIASKHHDPLSPKTVSKYFTKARNASGLSFDGNPP 305 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + H +R SA G K+ A Y R Sbjct: 306 TFHELRSLSA-RLYRNQIGDKFAQRLLGHKSDLMAARYRDSRGRE 349 >gi|326315550|ref|YP_004233222.1| integrase family protein [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372386|gb|ADX44655.1| integrase family protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 326 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 39/295 (13%), Positives = 75/295 (25%), Gaps = 40/295 (13%) Query: 77 EYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRK---HTP 130 Y + LA + + ++ + D ++ T HIR V Sbjct: 17 RYLEHVRVEKRLAQRTVTLYTLDLAKLAASARDAGVPLLQLQTAHIRRFVAQMHAGGRGG 76 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----- 185 L+ R F WA RQ V NP V P+ + +D + F Sbjct: 77 RGIALILSGWRGFFTWAARQGLVPHNPVQGVRAPRAPKPLPKALGVDDAVRLAEFEGSSG 136 Query: 186 --WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 ++ E L GLR + + + + K Sbjct: 137 SDPWLEARDAAMVELLYGCGLRVGELAGLDAVPGPDTQRQGRGWIDLQAAEAHVFGKGSK 196 Query: 244 LLAMTPIGKETFFINNDKQ------------------------KMNATQFSIWFKAKATK 279 ++ + + ++ + ++ Sbjct: 197 RRSVPVGSAALAALRAWLEVRLQPFGAASGRADAALFLGRRGARLTGQSIWSRLRQRSQL 256 Query: 280 AGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 AG+ H +R A+ + + G + + YT+ D L Sbjct: 257 AGLSTPVHPHMLRHSFASHLLQSSGDLRAVQELLGHANITTTQVYTR-LDFQHLA 310 >gi|261210225|ref|ZP_05924522.1| integrase [Vibrio sp. RC341] gi|260840765|gb|EEX67314.1| integrase [Vibrio sp. RC341] Length = 317 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 39/308 (12%), Positives = 91/308 (29%), Gaps = 19/308 (6%) Query: 44 IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103 + L + + K TL LI+ + + H +L+ + R +I Sbjct: 21 RKRDAAQLDKRLELQLKRENINKDYRTLDELITIWYR-MHGKTLSDHIR--LRKLLYRIS 77 Query: 104 RKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYV-AINPCLS 160 G+ +T++ E R + + ++ + + +R +F R + NP Sbjct: 78 ECLGNPVGSDLTSEMFAKYRERRTLEVSLTTVNREHSYLRAVFNELDRLGVITYENPLTK 137 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE--FLLYSGLRCSDSCRAGVQHLQ 218 + + + +R + +++ + + L L +G R ++ + Sbjct: 138 IRQFREAEGELRFLSHDEIARLLEQCKVSTNKSLIHVVKICLATGARWGEAENLKPSQIA 197 Query: 219 NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278 N + K+ TV + L + + F Sbjct: 198 NGKVTFLNTKSKKNRTVPINQILFNELEELEPFSNSRMFVG-----SLAAFRTALSRADI 252 Query: 279 KAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338 + ++ H +R A+ G +L G K + Y L + Sbjct: 253 ELPAGQNTHVLRHTFASHYVMGGGNIVKLRDVLGHKEITTTMRYAH------LAPDHLED 306 Query: 339 ISSVVDSD 346 + + Sbjct: 307 ALRLNPLN 314 >gi|242243126|ref|ZP_04797571.1| bacteriophage integrase [Staphylococcus epidermidis W23144] gi|242233474|gb|EES35786.1| bacteriophage integrase [Staphylococcus epidermidis W23144] Length = 348 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 42/326 (12%), Positives = 111/326 (34%), Gaps = 24/326 (7%) Query: 13 KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 K R Y FR R + + + A L T TL Sbjct: 2 KVTKRGNSWQYDFRFEGKRYRKTSFKTKRDATQAANKLLNDLTK-----GLITNNKITLT 56 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132 ++++++ ++ + ++ Y +++ D KIT + + + K S Sbjct: 57 KYLNDWKEIYIKEYVSSKTYKNYCRYCEKVEYYFKDKPLDKITRNEYQLFLTNFKDNLSQ 116 Query: 133 -----AIQFL-TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 +F+ ++ + + N + +P K E + + +++++ K ++ Sbjct: 117 DQLSRLNKFITKAISTAIFDGLITKDFTFNVKVESSKPPIKQESDKFFNIDELKKIKDYY 176 Query: 187 SEGSQPRLAFEF----LLYSGLRCSDSCRAGVQHLQN-------NIFSIKTQKTGTIITV 235 ++ A ++ +G R SD + + N K+ ++ Sbjct: 177 LSKTKYYSASTHLILLMIETGGRFSDCINLTRKDINELNLEIFLNGTKNKSAPRYVSVSK 236 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293 L +K + E + N+ +++ + + + +K +++ ++H R Sbjct: 237 TLIQILLKYIENHTSSIEGYVFINNGKQITNSSVNKSIREACSKLNIHRNLTSHAFRHTH 296 Query: 294 ATISADAGATAHELMATYGWKTVDQA 319 A++ G + + G ++D Sbjct: 297 ASMLIHEGLNIYYISKRLGHSSIDVT 322 >gi|164688240|ref|ZP_02212268.1| hypothetical protein CLOBAR_01885 [Clostridium bartlettii DSM 16795] gi|164602653|gb|EDQ96118.1| hypothetical protein CLOBAR_01885 [Clostridium bartlettii DSM 16795] Length = 370 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 44/364 (12%), Positives = 107/364 (29%), Gaps = 37/364 (10%) Query: 13 KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 ++R+++ + + + + L + + L+ Sbjct: 7 RKRSKNYIVYLEYTDETTGKKKQKNMGSYPLKRDASKRLNELKEEIYNDDLVAPNDMKLE 66 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR--KHT 129 + ++ + +L++ + + I G+ + HI++ V+ + Sbjct: 67 KYLMDFLEKYKP-NLSITTYNCYIRICKKYINPMLGNIKLNDLKPIHIQNYVDDLVGILS 125 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 P + + + + K A + + V + +E PK K + ++D+ + + Sbjct: 126 PQTIKIHINILNLALKRAYKLKLVKYDIVDCIEVPKNKKFKSEVYDQKDIAKLLETI-KN 184 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI------------------------K 225 + L + GLR S+ + +I + Sbjct: 185 TDLELPINLAIGLGLRISEVLGLSWSDIDFTENTITIEKITARDSGKVILKEPKTDTSKR 244 Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFI----NNDKQKMNATQFSIWFKAKATKAG 281 T + L D K L GK + ++ + S F K Sbjct: 245 TISAPKEVMAMLKDYKRKYLQDKLQGKIKDCNLLFLDKNENPIAEDVLSKKFSRFLKKHN 304 Query: 282 VNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRI 339 + H +R T+ +A + G V+ Y+ + + S +I Sbjct: 305 LKHIRFHDLRHSHVTLLINAKVPIKVISERVGHSNVNTTLNIYSHTL--KEMDQEASEKI 362 Query: 340 SSVV 343 S + Sbjct: 363 SESI 366 >gi|188495542|ref|ZP_03002812.1| Int [Escherichia coli 53638] gi|188490741|gb|EDU65844.1| Int [Escherichia coli 53638] Length = 327 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 42/307 (13%), Positives = 95/307 (30%), Gaps = 23/307 (7%) Query: 26 RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85 R G+RIR A+ T + ++ R TL L+ + K H Sbjct: 18 RGRDGKRIR-RKFERKAEAVAFER-YTIANASQKEWAGQRADRRTLTELLDIWWK-YHGQ 74 Query: 86 SLAVNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTS 139 + ++ F+ +++ GD ++ + + R + ++ + + Sbjct: 75 NHEHGTKE-----FNHLLKTISGIGDIPVSRMNKRALMDYRSMRLRDGISAATINRDIYR 129 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199 + +F ++ + + + P + + ++ + G L Sbjct: 130 LSGMFTKLIQLDEFSGQHPIHGLPPLTEANPEMTFLEKAEIEKLLNVLAG-DDLLVALLC 188 Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259 L +G R ++ + N + K G TV ++ K + Sbjct: 189 LSTGGRWTEVATLKPAQITNCRVTFLKTKNGKKRTVP--------ISKELEKKVKEEASA 240 Query: 260 DKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 K++ +F + N++ H +R A+ G L G ++ Q Sbjct: 241 KLFKVDYEKFCGILRRVKPDIPPNQATHILRHTFASHFMMNGGNIIALQQILGHASIQQT 300 Query: 320 ETYTKGA 326 Y A Sbjct: 301 MAYAHLA 307 >gi|294647358|ref|ZP_06724951.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294809021|ref|ZP_06767743.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] gi|292637317|gb|EFF55742.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294443746|gb|EFG12491.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] Length = 330 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 31/264 (11%), Positives = 80/264 (30%), Gaps = 14/264 (5%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESRK 127 + L++ + + + + + + ++++ ITT IR E + Sbjct: 53 EHLLNSFISAKKIEGCSDKTLTYYRNTIERLLVTL-SLAICHITTTDIRTYLSDYQEEHQ 111 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + + F W ++Y+A +P + + K + + E ++Q Sbjct: 112 SSKVTIDNMRRIFSSFFAWLEDEDYIAKSPVRRIHKVKTDSLVKEVLSDEQLEQ-LRDSC 170 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLA 246 + + L +G+R + + + + + V L Sbjct: 171 TNKRDLAIIDILASTGIRVGELVKLNREDIDFHERQCVVFGKGNKERIVYFNARTKLHLQ 230 Query: 247 MTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299 + ++ ++ + I + + K H R+ AT++ D Sbjct: 231 QYLNERTDDNPALFVSLHSPHTRLTISGVEIRIRKLGQSLSMPKVHPHKFRRTLATMAID 290 Query: 300 AGATAHELMATYGWKTVDQAETYT 323 G ++ G +D Y Sbjct: 291 KGMPIEQVQRLLGHVRIDTTLHYA 314 >gi|163855344|ref|YP_001629642.1| tyrosine recombinase xerD [Bordetella petrii DSM 12804] gi|163855612|ref|YP_001629910.1| putative integrase/recombinase [Bordetella petrii DSM 12804] gi|163259072|emb|CAP41371.1| Tyrosine recombinase xerD [Bordetella petrii] gi|163259340|emb|CAP41640.1| putative integrase/recombinase [Bordetella petrii] Length = 349 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 42/310 (13%), Positives = 100/310 (32%), Gaps = 41/310 (13%) Query: 66 KKPTTLKWLISEYRKSA--HWGSLAVNSRISFE---SYFDQIIRK-----SGDFDYRKIT 115 ++PT + +S++ ++ N+ S+ S + + + Sbjct: 5 RQPTDFAYALSKFLGEHLAAHRGMSANTVASYRDTFSILLRFMEHQAGVKIERICIADLH 64 Query: 116 TKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAV---RQEYVAINPCLSVERPKRKT 168 K I++ + R ++ ++ Q L+++ F++ + + + L+++ KR++ Sbjct: 65 HKQIQAFLLWLEQDRGNSVNTRNQRLSAITSFFRFVMSIYPEHILLCQQILNIQFKKRQS 124 Query: 169 EGIRPWTKEDMQQFKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 + + E ++ G + + L +G R + V L+ + Sbjct: 125 STVDYLSIEAVELLLQQPNARKPMGRRDLVLLSVLYDTGARVQELANMNVSDLKLTAPAT 184 Query: 225 KT--QKTGTIITVELPDGFMKLLAMTPIGKETFF---------INNDKQKMNATQFSIWF 273 K + V L LL + NN ++++ S Sbjct: 185 ARLLGKGAKVRLVPLLAPTTALLVSYLQEHHGQYLEQKDRPLFCNNVRKRLTRAGISYIL 244 Query: 274 KAKATK--------AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 + A + G S H +R A AG + G + E Y + Sbjct: 245 QKYAREVSQGNPGLLGTKISPHTLRHSKAMHLLQAGVNLIYIRDLLGHSDIKTTEIYARA 304 Query: 326 -ADRIRLGIK 334 D + ++ Sbjct: 305 DLDSKKAALE 314 >gi|154489817|ref|ZP_02030078.1| hypothetical protein PARMER_00045 [Parabacteroides merdae ATCC 43184] gi|154089259|gb|EDN88303.1| hypothetical protein PARMER_00045 [Parabacteroides merdae ATCC 43184] Length = 407 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 43/340 (12%), Positives = 85/340 (25%), Gaps = 26/340 (7%) Query: 23 YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY-INSPRKKPTTLKWLISEYRKS 81 Y K R + + + + Y S Sbjct: 74 YLIDKPRTPAERQQNKETLELAMRIRAEREQEFKESMLGYRLKKDRAVNFLDYFQAYINS 133 Query: 82 AHWGSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRSGVESRKHT--PS 131 + + + IT + + V + Sbjct: 134 YTKKD-----IRMVQIALSRFKDFLKEKYPMNECSIKPELITKEMMEQFVAYLQSRSVGE 188 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP---WTKEDMQQFKSFWSE 188 A + + ++A+ + + +PC V + + + +E Sbjct: 189 GAKSIYQRFKKVIRYAIEHDVMLKDPCKDVTCKVDSQMLRKDVLSLEEIQKLMACHYDNE 248 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL---L 245 R F F LY GLR D +++ +K +++ T + L L Sbjct: 249 NPIVRRTFIFCLYCGLRFCDVKDLTYRNVDYANRLLKFEQSKTKGHSASSGVVIPLNDGL 308 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303 K +AG++K S H R A + GA Sbjct: 309 LSIIGEAPADKNCLIFDLPTYESCCKSVKRWVKRAGIDKHISWHCARHSFAVNILNNGAN 368 Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343 + + G + E YT+ D +L + + + Sbjct: 369 IKTVASLLGHSGLKHTEKYTRAVD--KLKEEAINSLPELK 406 >gi|326391735|ref|ZP_08213258.1| tyrosine recombinase XerD [Thermoanaerobacter ethanolicus JW 200] gi|325992235|gb|EGD50704.1| tyrosine recombinase XerD [Thermoanaerobacter ethanolicus JW 200] Length = 290 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 32/261 (12%), Positives = 84/261 (32%), Gaps = 20/261 (7%) Query: 71 LKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESRK 127 L ++ E+ L+ N+ S+ +Q + + + I + + K Sbjct: 2 LNNVVGEFLDFLTKNKKLSKNTLESYNRDINQFLNYLEEIGINCYNVKKSTILNYLYYLK 61 Query: 128 HTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 ++ + L+S++ + + ++ + +P + PK + + T E + S Sbjct: 62 KKGKSQATVSRNLSSLKAFYHYLFMKKKIEEDPTYMINTPKVEKKPPTTLTVEQVDMLLS 121 Query: 185 FWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 +G + + E L +GL+ S+ ++ + + + + + + Sbjct: 122 LDFGDDEKGLRDKALIELLYATGLKVSEVISLKLEDVNLSYGYVVIRSN-KERVIPIGSH 180 Query: 241 FMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKA--GVNKSAHGVRK 291 ++ L + QK+ + K G + + +R+ Sbjct: 181 AIEALKNYIEKGRKAKNGENTLFLNLRGQKLTRQGCWKIIREYTDKINPGFPVTPNTLRQ 240 Query: 292 FSATISADAGATAHELMATYG 312 A GA + G Sbjct: 241 SFAQHMLQNGADIRAVQEMLG 261 >gi|293393584|ref|ZP_06637894.1| phage integrase family site-specific recombinase [Serratia odorifera DSM 4582] gi|291423919|gb|EFE97138.1| phage integrase family site-specific recombinase [Serratia odorifera DSM 4582] Length = 335 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 43/307 (14%), Positives = 97/307 (31%), Gaps = 23/307 (7%) Query: 26 RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85 R +G+RIR + + + + K+E++ + TL L+ + Sbjct: 27 RGRNGKRIR-RRFEKKQEAVLFERYVLANADKKEWLGASVD-RRTLSELLDTWWLLYGQ- 83 Query: 86 SLAVNSRIS---FESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTS 139 ++ + + + ++ IR GD +++ + I R + ++ + + Sbjct: 84 -----TQENGEIEKRHLNKTIRALGDPAVNRLSKRTIAQHRGQRLEDGISAATINRDVYR 138 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199 +F ++ + P ++T + + G R+A Sbjct: 139 FSGMFSTLIKLDEFRKENPCKGLEPLKETPPAMTYLAKSEISRLLNTLTGDDRRVA-LLC 197 Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259 L +G R +S + + + + K G TV ++ G+ Sbjct: 198 LSTGARWGESSTLRGEQVNHGRVTFLKTKNGKKRTVP--------ISEELEGEIKTSDTG 249 Query: 260 DKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 K++ F K ++ H +R A+ G L G ++ Q Sbjct: 250 PLFKVDYENFCERLKQVKPDLPRGQATHVLRHTFASWFMMNGGNIIALQQILGHASIQQT 309 Query: 320 ETYTKGA 326 Y A Sbjct: 310 MVYAHLA 316 >gi|227461184|gb|ACP39539.1| putative integron integrase [uncultured microorganism] Length = 317 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 35/302 (11%), Positives = 84/302 (27%), Gaps = 52/302 (17%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132 ++ + R+ + ++ + ++ + IR G + + + + + + S Sbjct: 16 VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 ++ L + + + + RP+ T +++ + + Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230 RL + L +G+R S+ + V+ L + +I ++ Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193 Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265 + + A + + M Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253 Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 F FK +AG+ K + H +R AT +G + G V YT Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313 Query: 324 KG 325 Sbjct: 314 HV 315 >gi|317128840|ref|YP_004095122.1| integrase family protein [Bacillus cellulosilyticus DSM 2522] gi|315473788|gb|ADU30391.1| integrase family protein [Bacillus cellulosilyticus DSM 2522] Length = 324 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 47/304 (15%), Positives = 97/304 (31%), Gaps = 25/304 (8%) Query: 49 SALTGSTPKREYINSPRKKPT-----TLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103 T + + +S R K +L + + L+ + ++ +F ++ Sbjct: 3 RERTKMKKGKRFTDSTRVKKQNKINLSLTEMYERFLLFKKSEGLSKQTLFDYDVHFKYLL 62 Query: 104 RKSG-DFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158 D ++TT+ S+ L ++R +++ + ++ Sbjct: 63 DFLERDLMADEMTTEIFLEYRNYMLNDLGLKASTVNIRLRTIRAFLRYSYEEGWIDQPIH 122 Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214 + K + + + +++ S + G + ++ F +L S R S+ Sbjct: 123 EKFKPVKAPQKEVDALSPREIKLLLSQINDDYYAGFRDKVLFFTMLDSMARISELLAIKR 182 Query: 215 QHLQNNIFSIK----TQKTGTIITVELPDGFMKLLAMTPIGKETFFI-----NNDKQKMN 265 +++ IK KT V + KLL F D Q ++ Sbjct: 183 ENVDLRNGVIKLEADGTKTKVDRFVPISTRTSKLLQEYINETSDFEQEILFLTYDGQVLS 242 Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 A AG+NK S H R A + G L + G T+ Y Sbjct: 243 ANTVRKSLMDYGKAAGINKQVSPHIWRHSGAILYIMNGGDPFSLKSILGHTTLHMTNHYV 302 Query: 324 KGAD 327 + A+ Sbjct: 303 QMAN 306 >gi|218263977|ref|ZP_03477908.1| hypothetical protein PRABACTJOHN_03598 [Parabacteroides johnsonii DSM 18315] gi|218222388|gb|EEC95038.1| hypothetical protein PRABACTJOHN_03598 [Parabacteroides johnsonii DSM 18315] Length = 389 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 49/373 (13%), Positives = 98/373 (26%), Gaps = 49/373 (13%) Query: 4 SLRLPPFVTKERTRHGKIIYY---FRKGHGRRIRLP-------YPHESTFIP-------- 45 ++ P + K + +G + Y + KG + L P + Sbjct: 9 KVKEPVRIRKRKLANGNMSLYLDVYVKGVRKVESLGLYLVPEQTPIDKQQNAHAMQVAGK 68 Query: 46 -AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR 104 L N ++ TL + EY + + ++ + Sbjct: 69 IKAERILALQNHGVRQWNKVKRSCITLIDFLKEYEQEKF--GFSASTLKG-RRDLRLKVE 125 Query: 105 KS------GDFDYRKITTKHIRSGVESRKH------------TPSSAIQFLTSMRVLFKW 146 D + R + ++ + +A + Sbjct: 126 TYLNETCQPDIVLANVDADFCRGFIAFLRYAKNSVRKDGSTISNGAAHHHQAVLNGALNK 185 Query: 147 AVRQEYVAINPCLS---VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203 AVR+ + NP S E+ + T E+++ + + AF F ++G Sbjct: 186 AVREGILTSNPLKSLASKEKYQPSESIREYLTLEELKAAMAAPCPRDDVKRAFLFSCFTG 245 Query: 204 LRCSDSCRAGVQHL---QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND 260 LR SD + + + + + L + Sbjct: 246 LRLSDVRSLTWGKIIKAPDGHTLYIRVRMQKTQKLLNVPLSKEALDCLYPKDDADEPIFT 305 Query: 261 KQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQ 318 A+ A + K H R AT+ GA + G V+ Sbjct: 306 L-PAGASNIERNLTKWMQNAKITKHITYHCSRHSFATMMLTLGADIYTTSKLLGHANVNT 364 Query: 319 AETYTKGADRIRL 331 Y K D+ ++ Sbjct: 365 TSIYAKIVDQKKI 377 >gi|188589919|ref|YP_001921531.1| tyrosine recombinase XerD [Clostridium botulinum E3 str. Alaska E43] gi|251778368|ref|ZP_04821288.1| tyrosine recombinase XerD [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|188500200|gb|ACD53336.1| tyrosine recombinase XerD [Clostridium botulinum E3 str. Alaska E43] gi|243082683|gb|EES48573.1| tyrosine recombinase XerD [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 292 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 28/258 (10%), Positives = 77/258 (29%), Gaps = 20/258 (7%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVESRKHT 129 I+ Y++ + N+ ++ + ++ K+T + + Sbjct: 5 INNYKEYLFDSGKSENTIYAYVTDVTLYLKFLDKKGIDIYKSDKLTVMAYIQYLLESGKS 64 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT----KEDMQQFKSF 185 S + + S+R + + Q + P + + K + + T + ++ + Sbjct: 65 ERSINRIVISLRSFYSYLKSQSLINEVPKIEYKSSKNNRKLPQILTVDEVDKIIRTVEKD 124 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-TGTIITVELPDGFMKL 244 +G + E + +G++ S+ V + + ++ + + K Sbjct: 125 CPKGIRDNALLELMYATGMKVSELISLNVDDINLELHFVRCTDSRNFERLIPIGRSACKA 184 Query: 245 LAMTPIGKETFFINNDKQ--------KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294 L + K+ K + +A ++K + + R A Sbjct: 185 LNEYLSIRYKIAECGVPNLFVNLNGNKLTRQGIWRIVKEYSKRAHIDKDVNLNTFRHSFA 244 Query: 295 TISADAGATAHELMATYG 312 GA + G Sbjct: 245 VHLLQNGANVRAVQKLLG 262 >gi|325299603|ref|YP_004259520.1| Tyrosine recombinase xerC [Bacteroides salanitronis DSM 18170] gi|324319156|gb|ADY37047.1| Tyrosine recombinase xerC [Bacteroides salanitronis DSM 18170] Length = 292 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 41/266 (15%), Positives = 91/266 (34%), Gaps = 23/266 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESR-- 126 L + K + + + + +S+ D+ + IR V S Sbjct: 2 LKESFLKYLQFEKNYSEKTVVSYGIDLSGFEAYFKAVDETLDFATVDADVIRGWVVSLMD 61 Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + SS + L+S+R +++ +R++ V+++P V PK+K + DM + Sbjct: 62 EGYAASSVNRKLSSLRSFYRYLLREKVVSVDPVRKVTGPKKKKPLPVFVKEADMDRLLDA 121 Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDG 240 E + + +G+R S+ ++ + T K + + Sbjct: 122 ECGTDFESVRNKAIVAVFYETGIRLSELIGLKDANVDFSAGTIKVTGKRNKQRVIPFGEE 181 Query: 241 FMKLLA--------MTPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSAHGVR 290 +L E FF+ + + M + + ++ A +S H +R Sbjct: 182 LENILQVYLSARNEYCHTECEAFFVRKEGKAMYPGMVYLLVRQNLSRVVALKKRSPHVLR 241 Query: 291 KFSATISADAGATAHELMATYGWKTV 316 AT + A + G +++ Sbjct: 242 HSFATAMLNNQAGLEAVKELLGHESL 267 >gi|323973807|gb|EGB68981.1| phage integrase [Escherichia coli TA007] Length = 336 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 52/305 (17%), Positives = 100/305 (32%), Gaps = 18/305 (5%) Query: 28 GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87 +G+RIR + + A+ + +E+++ P K L L + K Sbjct: 20 RNGKRIR-RKFDKKSEAMAFEKHTQYNHHSKEWLSKPTDKRQ-LSELKELWWK---LKGK 74 Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMRVLF 144 S+ ++ +G+ +IT I R+ P++ + L ++ +F Sbjct: 75 HEEHGQSYLRKIERFETMTGNPCAFQITKSLITQYCAQRRGEGIKPTTINRDLITLGGMF 134 Query: 145 KWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203 + + Y +P ++ K +T T E++ + R L +G Sbjct: 135 TTLIESELYNGEHPFRGFKKLKEQTAETGYLTLEEIDALLAA--LSGDNRKIAVLCLSTG 192 Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK 263 R ++ R +++ +N S KT T TV + D + G Sbjct: 193 ARWGEAARLKAENVIHNRVSFVKTKTNTPRTVPISDDVAAYVVGKTRGFLFPEA------ 246 Query: 264 MNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + F K ++ H +R AT G L G + Q Y Sbjct: 247 -SYADFRRTLKEVKPDLPAGQATHALRHSFATHFMINGGNIITLQRILGHTKIAQTMVYA 305 Query: 324 KGADR 328 A + Sbjct: 306 HFAPQ 310 >gi|103485566|ref|YP_615127.1| phage integrase [Sphingopyxis alaskensis RB2256] gi|98975643|gb|ABF51794.1| phage integrase [Sphingopyxis alaskensis RB2256] Length = 302 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 32/293 (10%), Positives = 87/293 (29%), Gaps = 24/293 (8%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS-- 131 L ++ ++ + G + + + +R ++ Sbjct: 13 LRQRLLDDMAMRRFGPETQRNYLRDVGRFATWLGRSPHTA-SAEEVRQFQIDQQQAGVPV 71 Query: 132 -SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 + ++++R F + + + + R K+ + T ++++ Sbjct: 72 PTMNSIVSALRFFFTETLDRPDL----ARKLIRAKQVRKIPVVLTMAEVKRLLDATRC-L 126 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250 + + A +GLR ++ V ++ + ++ ++ LL + Sbjct: 127 KHQAALSVAYGAGLRVAEVSALKVSNIDSKRMLLRVERGKGGRDRNAMLPEGLLLLLRDW 186 Query: 251 GK------------ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATI 296 + F ++ Q A A ++K H +R AT Sbjct: 187 WRAGRQQGILYRDGWLFPGQGAAAHISTRQLHRVVVEAAEAADIDKRVGPHTLRHSFATH 246 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSRRISSVVDSDDP 348 + G + A G ++ Y + A + R R++ ++P Sbjct: 247 LLEDGVNIRVIQALLGHANLNTTAFYLQVATKTTRKVTSPLDRLALASPIEEP 299 >gi|291546700|emb|CBL19808.1| Site-specific recombinase XerC [Ruminococcus sp. SR1/5] Length = 380 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 45/376 (11%), Positives = 109/376 (28%), Gaps = 41/376 (10%) Query: 10 FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 + K + + Y RI Y + T+ A P + Sbjct: 7 NIYKRKDGRWEARYIKEHRINGRIHYGYCYGKTYHEARDKVNQARYALMNDQLLPVRGKR 66 Query: 70 T-LKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSG----V 123 +E+ S+ ++ + + + I G + ++ + + Sbjct: 67 NRFADYCNEWL-YLKRSSVKPSTFVKYTTILEKYIKPDLGQYFSEAVSEILVEQFSYRLI 125 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 R +P + L+ + + + +Q +A + P++ + +R T E+ ++F Sbjct: 126 HERGLSPKTVRDILSVLHSILNYTTKQNPLAKPV--DIVYPRQDRKEMRVLTCEEQKRFT 183 Query: 184 SFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV------- 235 + + P + L +GLR + C + + I + T + Sbjct: 184 EYLLQDMDPCKFGVLLALLTGLRIGEVCALKWEDISLENKVIFVRHTMQRLKNLNPASEE 243 Query: 236 --------ELPDGFMKLLAMTPIGKETFFINNDK------------QKMNATQFSIWFKA 275 ++++ M ++ + + Sbjct: 244 RTRIITGVPKSGRSVRIIPMNQDIEKLCNKWRADDLEAYVLTGKAGYFLEPRTLQYRMRQ 303 Query: 276 KATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA-DRIRLG 332 + H +R AT +AG L G + E Y + + R Sbjct: 304 YTKDCNLKNVHFHTLRHSFATRCVEAGFEIRSLSEILGHSSTRITLECYVHSSMNLKRKN 363 Query: 333 IKNSRRISSVVDSDDP 348 ++ +I+ V+ + P Sbjct: 364 MEKL-KIADTVEKEFP 378 >gi|253579255|ref|ZP_04856525.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849353|gb|EES77313.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 350 Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 55/361 (15%), Positives = 106/361 (29%), Gaps = 39/361 (10%) Query: 12 TKERTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 K++T+ G FR G++ + T A + Sbjct: 4 YKDKTQ-GTWYVSFRYIDWTGKKTQKLKRGFKTKKEALNYEKEFIRKTAADMKMEMNS-- 60 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH 128 I Y + L NS + + I+ G +IT I + + Sbjct: 61 ----FIQVYFEDKK-NELKENSIRNKQHMMNKHIVPYFGTRKMNEITPAEIIQWQNAIQE 115 Query: 129 TPSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERP-KRKTEGIRPWTKEDMQQFKS 184 S + LF A + + NPC V++ K + WTK + +F + Sbjct: 116 KGYSKTYERMIQNQLNALFNHAQKIYNLKENPCKKVKKMGKSDANKLEFWTKAEYDRFIA 175 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSD----------------SCRAGVQHLQNNIFSIKTQK 228 GS+ L FE L ++G+R + ++ + Sbjct: 176 GIEPGSEDYLIFEILFWTGIREGELLALSLSDFDMSGNLLHINKTYNRIKKRDVIDTPKT 235 Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAH 287 ++ T+++P+ + + F + + A K GV H Sbjct: 236 ENSVRTIDIPNFLKEEVQEYAKKHYGFPEDQRLFPIVARTLQKRLKKYEALTGVKPIRVH 295 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVDSD 346 +R G + G K + TY L ++++ ++D+ Sbjct: 296 DIRHSHVAYLIYQGVEPLIIKERLGHKDIQMTLNTYGH------LYPSQQKKVAEMLDNK 349 Query: 347 D 347 Sbjct: 350 R 350 >gi|224367178|ref|YP_002601341.1| Phage integrase/recombinase family protein [Desulfobacterium autotrophicum HRM2] gi|223689894|gb|ACN13177.1| Phage integrase/recombinase family protein [Desulfobacterium autotrophicum HRM2] Length = 301 Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 36/282 (12%), Positives = 84/282 (29%), Gaps = 31/282 (10%) Query: 88 AVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGV---ESRKHTPSSAIQFLTSMR 141 + NS +++ + G + IT H+ + + + + + L+++ Sbjct: 19 SDNSVDTYDRAIRTFLDFLGISSPEELRLITHGHVIAFKKFLQDQGRSARTINNRLSAIS 78 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRK--TEGIRPWTKEDMQQFKSFWSE----GSQPRLA 195 LF + Q+ V IN V+R + T ++++ + G + R Sbjct: 79 SLFNHLIDQQVVKINVAQGVKRMPVNASRVEAKVLTPDEVRNLLNSPDLSKLQGLRDRAI 138 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--IITVELPDGFMKLLAMTPIGKE 253 L ++G R S+ C ++ + +++ + Sbjct: 139 LSTLFFTGCRVSEVCSLKIKDFYEEQGFFVLDFWVKGGKRNRMAINQELQIALDQYLTDA 198 Query: 254 TFFINN----------------DKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATI 296 + K+ ++ F A G+ + H R T Sbjct: 199 GHGPDPASFLFLPVKSGYKASDPKRNLSRRTIDHLFNKYANTIGIAGITPHSARATFITQ 258 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338 + + + T G + + Y K + R + R Sbjct: 259 ALENNCPIEAVQKTVGHAQIKTTQMYDKRTAKYRESASFAVR 300 >gi|314938444|ref|ZP_07845733.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133a04] gi|314942723|ref|ZP_07849548.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133C] gi|314952531|ref|ZP_07855530.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133A] gi|314994043|ref|ZP_07859368.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133B] gi|314997944|ref|ZP_07862841.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133a01] gi|313588052|gb|EFR66897.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133a01] gi|313591527|gb|EFR70372.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133B] gi|313595365|gb|EFR74210.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133A] gi|313598534|gb|EFR77379.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133C] gi|313642211|gb|EFS06791.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133a04] Length = 443 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 53/372 (14%), Positives = 114/372 (30%), Gaps = 47/372 (12%) Query: 1 MTPSLRLPPFVTKERTRHGKIIYYFR--------KGHGRRIRLPYPHESTFIPAYMSALT 52 M + + K T+ G+ Y F G R+ + L Sbjct: 43 MAKKE-IDKRIKKHLTKKGEEKYQFSLYLGVDPLTGKKRKTTRRGFSTLLAAERALKRLE 101 Query: 53 GSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDY 111 ++ S +K +++ + ++ ++ ++ S + FD I++ GD Sbjct: 102 ADIQEKGLQASTAQKSKKFEYVYGLWFENYK-KTVKESTWSSTKQIFDTHILKVFGDKFI 160 Query: 112 RKITTKHIRSGVESRKHT-PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK----- 165 KI + V + + P + +F +A + + NP V P+ Sbjct: 161 DKIDVFFCQEAVNTWSDSHPKIFKKIKNYTSNVFDYAASLQIITSNPMKLVSIPRGEALD 220 Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL-YSGLRCSDSCRAGVQHLQNNIFSI 224 + + I +TKE++ +F R F LL ++G+R ++ + ++ Sbjct: 221 IEDKNIEFYTKEELIEFLEAIRNDDDERYLFFSLLAFTGIRKGEAFALTWSDIDFKSKTL 280 Query: 225 KTQKTGTI-----------------ITVELPDGFMKLLAMTPIGK-----------ETFF 256 KT T + L + + LL Sbjct: 281 NINKTVTRGYQGRLIVNTPKSKSGKRKIYLDNDLISLLRKYYTKNKTIVTIQSENLIFHH 340 Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTV 316 + + + + HG R A++ ++GA+ ++ G + Sbjct: 341 DGLLYNPTVSRSWLNVIYKHHPELTKRITTHGFRHTHASLLFESGASLKDVQERLGHADI 400 Query: 317 DQA-ETYTKGAD 327 YT + Sbjct: 401 QTTSNIYTHVTE 412 >gi|119717469|ref|YP_924434.1| phage integrase family protein [Nocardioides sp. JS614] gi|119538130|gb|ABL82747.1| tyrosine recombinase XerC subunit [Nocardioides sp. JS614] Length = 312 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 36/312 (11%), Positives = 93/312 (29%), Gaps = 33/312 (10%) Query: 55 TPKREYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRK---SGDFD 110 + + + P L Y + L+ ++ ++ ++ G + Sbjct: 2 SEEEQSARLPEAMARALGD----YERHLAAERDLSEHTVRAYIGDVAGLLEHASRLGQTE 57 Query: 111 YRKITTKHIRSGVES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167 + + +RS + + ++ + T+ RV W R ++ S+ PK Sbjct: 58 PGDLDLRTLRSWLAKQQTMGRSRTTLARRATAARVFTAWLARTGRTPLDAGASLGAPKAH 117 Query: 168 TEGIRPWTKED--------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219 ++ ++ G + E L +G+R + + L Sbjct: 118 RTLPPVLRTDEAADLVRAAVEHADDGSPVGLRDVAMLELLYATGIRVGELVGLDIDDLDR 177 Query: 220 NIFSIK-----------TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ 268 ++ V+ + L F+ ++++ Sbjct: 178 ERNVVRVLGKGRKERTVPFGRPAARAVDFWLKHGRPLLAVEGSGAALFLGARGRRIDQRA 237 Query: 269 FSIWFKAKATKAG--VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 + + + HG+R +AT + GA + G ++ + YT + Sbjct: 238 VRTVVHRRIAEVPGAPDIGPHGLRHTAATHLLEGGADLRSVQELLGHASLATTQIYTHVS 297 Query: 327 -DRIRLGIKNSR 337 +R+R + + Sbjct: 298 TERLRRAYQQAH 309 >gi|298249757|ref|ZP_06973561.1| integrase family protein [Ktedonobacter racemifer DSM 44963] gi|297547761|gb|EFH81628.1| integrase family protein [Ktedonobacter racemifer DSM 44963] Length = 297 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 35/273 (12%), Positives = 86/273 (31%), Gaps = 27/273 (9%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 LI+ + A ++ ++ + + + G ++ I ++ S + + Sbjct: 19 LINTWL-----HDKAQTTQRAYRRFAYEYLTALG-KPFQMIAPLELKQYAMSLEGDAGTV 72 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193 + +++ L+ +A + Y+ +N +E PK + + +ED + Sbjct: 73 AYRVNALKSLYSYATKLGYIQVNLGELLEAPKVRQKLAERILEEDEMLRLVAGETNPRNH 132 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFS----IKTQKTGTIITVELPDGFMKLLA--- 246 + ++GLR S+ +++ K V + ++ L Sbjct: 133 ATLRLMYHAGLRVSEIVSLKWENIHKTKSGGATLDVWGKGEEQRYVPISPSMLEELEALP 192 Query: 247 ------------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKF 292 + ++ + A + G+ S H R Sbjct: 193 GRLPLLTRSTVGNDRYVFQGRKSKGGSIPLDTRHVHRIVQEAAKRVGIEDNVSPHWFRHA 252 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKG 325 +A+ S D GA + + G K++ Y Sbjct: 253 NASHSLDNGAPISVVQQSLGHKSLATTMKYLHV 285 >gi|169343418|ref|ZP_02864422.1| phage integrase [Clostridium perfringens C str. JGS1495] gi|169298504|gb|EDS80590.1| phage integrase [Clostridium perfringens C str. JGS1495] Length = 386 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 49/375 (13%), Positives = 96/375 (25%), Gaps = 56/375 (14%) Query: 18 HGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 G YY R G R R Y + T + + Sbjct: 12 KGIPYYYEIVEGNRNLDGTRSR-KYIYAKTVKELETK--VKEFKRNLDDGLKIDNKEVFQ 68 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQII--RKSGDFDYRKITTKHIRSGVESRKHTP 130 L + + H ++ +E + I G + + + I+ + Sbjct: 69 GLFKSWLFNTHLLDKKPSTIERYEGLYRNYILNSSLGKSKIKNLNSLVIQEYYNNLYKGG 128 Query: 131 SSAIQF---LTSMRVLFKWAVRQEYVAINPCLS--VERPKRKTEGIRPWT--KEDMQQFK 183 S ++ + Y + ++ P K + Q+ Sbjct: 129 RSVSTLKMLHKVIKPFLLFLYNNGYTKKDFGSKGLIKIPTEKINNEEELQVLTLEEQKIF 188 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL------ 237 EG++ +L F L +GLR + ++ +++K KT + Sbjct: 189 LNSLEGNKDKLIFMTALMTGLRLGELLNLKWSNVDLKEYTLKVDKTIKRVKNIETGKTEL 248 Query: 238 ------------------------------PDGFMKLLAMTPIGKETFFINNDKQKMNAT 267 + L+ + F + +++ Sbjct: 249 IEQEPKTKKSKRVVPIPLSLVKDLKELKKEQNKTKLLIGELYKNNDLVFATDFGNYLDSN 308 Query: 268 QFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TY-TK 324 + FK KA + K H +R AT + + G + TY T Sbjct: 309 NINKRFKKALIKANLEPKKFHSLRHTYATRLFENDVPLKTVSELLGHSNIQITANTYITV 368 Query: 325 GADRIRLGIKNSRRI 339 D + I I Sbjct: 369 LEDEKKKVINQLDNI 383 >gi|323170034|gb|EFZ55690.1| integrase [Escherichia coli LT-68] Length = 285 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 39/261 (14%), Positives = 79/261 (30%), Gaps = 16/261 (6%) Query: 71 LKWLISEYRKSAHWGSLA-VNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESR 126 L LI + K + N+ ++ D K+ T + R + Sbjct: 20 LSVLIDLWWKYHGQLMKSGHNT----RLKLLRLSEAMDDPCVHKLNTTMLTELRVSRIEQ 75 Query: 127 KHTPSSAIQFLTSMRVLFK-WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 PS+ + + ++ +F ++ NP ++ K + +K + Q Sbjct: 76 GIQPSTINREIGALSAMFTALISSGHFLNDNPVQGLKGMKVNEREMGYLSKSECVQLLDA 135 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 +E RLA E LL +G R + + + + + K TV + + + + Sbjct: 136 LAENPDERLAVEILLSTGARWGEVAALEQRRVLHCRITFSKTKNSKNRTVPISESLFEKI 195 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAH 305 ++ + K A ++ H +R A+ G Sbjct: 196 KKRGGKLVFPTLD-------YSLVRDVIKTVAPDVPDGQAVHALRHTFASHFMMNGGNIL 248 Query: 306 ELMATYGWKTVDQAETYTKGA 326 L G + Y A Sbjct: 249 TLQKILGHAKIQTTMIYAHLA 269 >gi|220928269|ref|YP_002505178.1| integrase family protein [Clostridium cellulolyticum H10] gi|219998597|gb|ACL75198.1| integrase family protein [Clostridium cellulolyticum H10] Length = 378 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 45/363 (12%), Positives = 106/363 (29%), Gaps = 42/363 (11%) Query: 20 KIIYYFRKGHGRR---IRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76 K +YY +G+ R+ +AL + N T++ ++ Sbjct: 16 KKLYYVTMDYGKDSTGKRVKTTKTFEKKKDAQTALKNFEADKIKQNLVFPSVLTVENWLT 75 Query: 77 EYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSS 132 + + + + +I K G++ +++ + + + K + ++ Sbjct: 76 YWLDDIKAIKCEETTLYGYRNIINKHLIPKLGNYKLQELNPTILNKYFKGKLDEKLSQNT 135 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 + ++ K AV +E + NP V P + + + + + + E + Sbjct: 136 IRKHYDLLKDTLKTAVDEEKILKNPLNKV-PPIKVQKNEKNFYNVEQLKTLFTIVENDRM 194 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII------------------- 233 + + GLR + ++ I + T Sbjct: 195 EIVVKLAGMLGLRREEIAGLKWDNIDLENRIITIAEARTQAGKKTVAKGTKNSSSHRTLY 254 Query: 234 -----------TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 + +LL + + + S FK + Sbjct: 255 APEEIINLLTSIKTTQEEQKRLLGEAYKDEGYIMAWENGEPYRPNYLSDLFKKIIDDNKL 314 Query: 283 N-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRIS 340 H +R A+I+ + G +++ G V + YT D K +I+ Sbjct: 315 PSLRLHDLRHTFASIANELGTNLYDISKALGHSQVGTTSQIYTHMFDATH--KKAISKIA 372 Query: 341 SVV 343 V+ Sbjct: 373 DVM 375 >gi|16611927|gb|AAL27410.1|AF429957_1 XerC-like protein [uncultured bacterium] Length = 312 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 37/278 (13%), Positives = 95/278 (34%), Gaps = 24/278 (8%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 L L+ +Y + + + E+ ++ ++G D ++T + +++ Sbjct: 14 LDALLGQYLREREAHGKSPATVHWQETAARLLMEETGARDLAELTPAILLDWFAAKRSQG 73 Query: 131 ----------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 S+ Q+ ++R KW ++ Y + L + + + ++P+T ++++ Sbjct: 74 GRGRRISVSISTLSQYERALRPFLKWLYQRGYTQTDLSLELPHYRPPKQVVQPFTPDELR 133 Query: 181 QFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237 F + SE R + LL +G+R ++ + + +++ + V Sbjct: 134 AFFAAASEPPNARRKLALYRLLLDTGIRRGEAVSLQLDAIYWRERTMRVEGKTGGRIVYF 193 Query: 238 PDGFMKLLAMTPIGKETFFIN--------NDKQKMNATQFSIWFKAKATKAGV---NKSA 286 + ++ + + + A + + A +AG+ + Sbjct: 194 SERSLRAINEYLNNERRPRRPGEATLFLDRHGDPLRAGEITQETIRIARRAGIMRDHVGP 253 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H R A AG L G ++ Y Sbjct: 254 HTFRHTFAVEYLKAGGDLRSLQVLLGHSKLETTSIYLH 291 >gi|283851773|ref|ZP_06369051.1| integrase family protein [Desulfovibrio sp. FW1012B] gi|283572893|gb|EFC20875.1| integrase family protein [Desulfovibrio sp. FW1012B] Length = 395 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 49/363 (13%), Positives = 107/363 (29%), Gaps = 39/363 (10%) Query: 1 MTPSLRLP---PFVTKE------RTRHGKIIYYFRKGHGRRIRLPYPH------ESTFIP 45 M R P V + +I Y + G+ I Sbjct: 1 MPAKKRFKTSYPGVYYVEGQAVATGKPERIYYVMYRRDGKLIEEKAGRQFQDAMTPAKAA 60 Query: 46 AYMSALTGSTPK--------REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFES 97 + E + TL L +EY S + A+++ Sbjct: 61 RIRAERIEGKAPSNNARREAEEAAKAAEVGRWTLAKLWTEY-ASHKPENHALST--DRSR 117 Query: 98 YFDQIIRKSGDFDYRK---ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA 154 + I G+ + + + +RS + + +P + L + L ++ V++ Sbjct: 118 FETYIKPAFGEKEPAEVLTLDLDRMRSRLLKQGKSPQTVKHVLALFKRLVRFGVKKGLCD 177 Query: 155 INPCLSVE--RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL--YSGLRCSDSC 210 P+ E +++ + + + A L ++G+R + Sbjct: 178 SPDPRKQTISMPRVDNETTEDLDADELARLVQAIEDEPNIQAANFMRLAMFTGMRRGELF 237 Query: 211 RAGVQHLQNN--IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ 268 + + + I+ K G + L D +LA P + + ++ + Sbjct: 238 KLEWRDVDFERGFIHIRHPKGGKSQKIPLNDAARAVLASHPHVENSPYVFPGQGGKQRVT 297 Query: 269 FSIWFKAKATKAGVNKSA---HGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTK 324 + +A + HG+R A+ A +G L K+ + + Y+ Sbjct: 298 IQVASNRIKARASLPADFRPLHGLRHLFASTLASSGQVDLLTLQKLLTHKSPNMTKRYSH 357 Query: 325 GAD 327 D Sbjct: 358 LRD 360 >gi|317126229|ref|YP_004100341.1| integrase [Intrasporangium calvum DSM 43043] gi|315590317|gb|ADU49614.1| integrase family protein [Intrasporangium calvum DSM 43043] Length = 375 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 57/342 (16%), Positives = 94/342 (27%), Gaps = 34/342 (9%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK--PTTL 71 R GK F +G+R P + + +RE + TL Sbjct: 15 RRLPSGKFQASFIGPNGKRQAAPNTFSTRVEAERWLLRVHESLEREEWRDSGAQLGRRTL 74 Query: 72 KWLISEYRKSA--HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--- 126 K Y A SR + + ++ D IT +RS Sbjct: 75 KDYAESYLTENPNVGERWAETSRRNMRLHLTPLL----DMPVASITPAVVRSWHAQALAG 130 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 +S Q +R + AV E + NPC + + + ++ Sbjct: 131 TGGRTSIAQTYRLLRSVLNMAVLDEAIQKNPCQIPRAGTDRPKERPIASPAEVAALIEA- 189 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------------- 231 + R A + GLR + V + +++ KT Sbjct: 190 -ITPRYRAAVALAAWCGLRRGELMALRVTDVDLEKATVRVDKTYVELLESRRRFEKEPKS 248 Query: 232 ---IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA---TQFSIWFKAKATKAGVNKS 285 V +P + L+A F GVN S Sbjct: 249 QAGRRVVSIPPHVLPLMAEHLETWAGPEFFFVGHDGTRMAGNALYQAFVRARKVVGVNLS 308 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 H +R T++A GA+ +L G + A Y + Sbjct: 309 FHDLRHTGQTLAAATGASLADLKRRLGHSSTAAALRYMHAVE 350 >gi|313109025|ref|ZP_07794998.1| integrase [Pseudomonas aeruginosa 39016] gi|310881500|gb|EFQ40094.1| integrase [Pseudomonas aeruginosa 39016] Length = 399 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 58/371 (15%), Positives = 104/371 (28%), Gaps = 35/371 (9%) Query: 9 PFVTKERTRHGKIIY--YFRKGHG--RRIRLPYPHESTFIPAYMSALTGSTPKREY---- 60 P + T G+ ++ +R G R+ L E T A + A R Sbjct: 29 PGFLCKITSTGRRVFMLQYRTNSGQPRKPSLGLYGELTVEQARVKAQDWLAEVRRGGDPG 88 Query: 61 -INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKH 118 + +K T+ L ++ + V+++ ++ D+ II G + Sbjct: 89 GAKAEARKAPTMAELCKKFMEDYSKKRNKVSTQDGYQGVIDRNIIPLLGRKKVHDVKRPD 148 Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 I +E + P+ A + +R +F A + P ++ Sbjct: 149 IAGLMEKLAYKPTEANKTFGVLRKMFNLAEVWGFRPDGTNPCRHVPMYPPGKETRLIVDE 208 Query: 179 MQQFKSFWSEGSQPR--------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230 E + LA R S+ C L + + Sbjct: 209 EMVRIFRQLEKLEAEGLENYVIPLAIRLQFEFAARRSEICPLEWSWLDFENRRVVWPDSK 268 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI------WFKAKATKAGVNK 284 + L T E A + W + + + Sbjct: 269 VGGISKPMSEEAYRLLSTAPRLEGCPYVLPSPNDPAKHLTFGEHYGGWCRTLKAASVPHV 328 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-----------IRLGI 333 HG+R S T A++G M G KTV Y D+ R I Sbjct: 329 GTHGIRHRSTTDIANSGVPTKVGMKLTGHKTVAMFMHYVHTEDKPVREAAELVASRRQAI 388 Query: 334 KNSRRISSVVD 344 +R+++ V Sbjct: 389 TGARQLAEAVA 399 >gi|283853709|ref|ZP_06370938.1| integrase family protein [Desulfovibrio sp. FW1012B] gi|283570887|gb|EFC18918.1| integrase family protein [Desulfovibrio sp. FW1012B] Length = 339 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 42/316 (13%), Positives = 91/316 (28%), Gaps = 11/316 (3%) Query: 17 RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSA-LTGSTPKREYINSPRKKPTTLKWLI 75 + G + + R ++ + + K +++++ + TL + Sbjct: 6 KRGNLQWEARIRKRGYPATCKTFDTKAEAEQWAKGVETEMSKGQFVSTKEAESYTLSECL 65 Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ 135 Y++ IS + R I +K I +R+ SA Sbjct: 66 DRYKEEYLPRLKDPRREISRANCLQ--SRAIAHRIMSTIRSKDIADYRRAREKEGISANT 123 Query: 136 F---LTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 L + LF +A + NP +PK R + ++ + Sbjct: 124 IRLDLALLSRLFNFAKSDWGMESLTNPVQLAAKPKLPPGRERRLESGEEEKLFEAIGDDF 183 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250 + +F L + +R + + + + S + T K + + Sbjct: 184 EFCAIIKFALETAMRRGEIVKLAWEDIDLRNKS-VLLRDTKNGTCRTVPLSRKAIEVLQG 242 Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAG-ATAHELM 308 ++ S AG+ N H +R + + + E+ Sbjct: 243 LPRHISGRVFPGHLHPDTLSSKMGKACQLAGLANLHFHDLRHEATSRFFEHTDLDVMEIK 302 Query: 309 ATYGWKTVDQAETYTK 324 A G K++ YT Sbjct: 303 AITGHKSLQMLARYTH 318 >gi|206975676|ref|ZP_03236588.1| integrase family protein [Bacillus cereus H3081.97] gi|206746138|gb|EDZ57533.1| integrase family protein [Bacillus cereus H3081.97] Length = 388 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 44/352 (12%), Positives = 100/352 (28%), Gaps = 42/352 (11%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL-- 71 ++ K Y+ + P + AL + + T Sbjct: 7 KKDDKTKTWYFVLTHGKKEDGKPRQFKKRGFKTKQEALKALHELEHSLMTGTYIAPTKML 66 Query: 72 --KWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH 128 ++L++++ + + + ++ II G+ + ++T I+ Sbjct: 67 YGEYLLNQWLEDKQ-TKVKKQTLQTYRWLVEKHIIPAIGNMELTQLTPMAIQKLYNQLTK 125 Query: 129 ----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + + + T + K A R ++ NP V+RPK + + I+ W +++Q F Sbjct: 126 EKALSDENIQKVHTLINDSLKKAERWGIISKNPASLVDRPKAEKKEIKVWDVKEVQTFLK 185 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK---------------- 228 S+ +AF L +G+R + + + I+ + Sbjct: 186 HAQSHSRYYIAFLLALTTGMRQGEILGLRWRDVDFETGCIRITQTLSSDGKEILPYTKTK 245 Query: 229 --------------TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274 + ++ + + N + F Sbjct: 246 SGSRTVDLPEETIIQLKKHRKLIESEKLEAGSEVYNNWDLVVCTELGTPTNKSNIRRSFN 305 Query: 275 -AKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK 324 H +R AT+ G + G V +TY+ Sbjct: 306 SIIKKAKIPKIRFHDMRHTHATLLLLQGVNPKIVSERLGHADVRITLDTYSH 357 >gi|291523379|emb|CBK81672.1| Site-specific recombinase XerD [Coprococcus catus GD/7] Length = 355 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 46/338 (13%), Positives = 102/338 (30%), Gaps = 35/338 (10%) Query: 13 KERTRHGKIIYYFRK----GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 ++ + GK + +R G R+ ++ I Sbjct: 4 EKDKKTGKWLIQYRYTDWQGKRRKSTKRGFATKREAEEWLR--------NFLITQKADFD 55 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE--- 124 + Y L ++ + + + +I+ G+ IT IR Sbjct: 56 MKFENFWKMYCADMETR-LREHTIRTKKYIVELKILLYFGNKRVNDITAADIRQWQNELI 114 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDMQQFK 183 ++P+ + +F +AVR + NPC + E + WT E+ ++F Sbjct: 115 KMGYSPTYLKTINNQLSAIFNYAVRYYDLKSNPCAKAGSMGKSKAEEMDFWTGEEFRKFI 174 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------- 232 +AF L ++G+R + + + +I K+ Sbjct: 175 DSVMNKRLSYMAFMTLYWTGMRLGELLALNPKDVDLEKRTITITKSYQRLGKKDVITPPK 234 Query: 233 -----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SA 286 + +P+ + N+ + + ++GV + Sbjct: 235 TPKSKRVITIPEFLAADIKDYIDSSYELQENDRLFPITKYYLEHEMQRGIKESGVKRIRV 294 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R + ++ G +A + G ++VD Y Sbjct: 295 HDLRHYHVSLLISMGFSAVSIGNRVGHESVDITYRYAH 332 >gi|152984207|ref|YP_001349101.1| integrase [Pseudomonas aeruginosa PA7] gi|150959365|gb|ABR81390.1| integrase [Pseudomonas aeruginosa PA7] Length = 399 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 56/369 (15%), Positives = 100/369 (27%), Gaps = 35/369 (9%) Query: 9 PFVTKERTRHGKI----IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE----- 59 P + T G+ Y G R+ L E T A A R+ Sbjct: 29 PGFLCKITPAGRKVFMLQYRTNAGERRKPALGQYGELTVDQARTMAQEWLAEVRKGGDPS 88 Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKH 118 + +K T+K + + +++ ++ D+ II G + + Sbjct: 89 AAKNAARKAPTMKEFCHTFMEDYSKQRNKPSTQRGYQGVIDRCIIPIMGRMKVQDVKRPD 148 Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + ++ + + A + +R +F A P +D Sbjct: 149 VATLMKKLAYKQAEANRTFGVLRKMFNLAEVWGLRPDGTNPCRHVPMYPPGKETRLIVDD 208 Query: 179 MQQFKSFWSEGSQPR--------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230 E + LA R S+ C + + + Sbjct: 209 ELVRIFRQLESLEAEGLENYVIPLAIRLQFEFAARRSEICPLEWDWIDLEKRRVVWPDSK 268 Query: 231 TIITVELPDGFMKLL-----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 T + L N+ + M + + AGV Sbjct: 269 TGGISKPMSEEAYRLLSTAPRREGCPYVLPSPNDPTRHMTHGEHYGGWTRVLKAAGVPHV 328 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-----------IRLGI 333 HG+R + T A++G M G KTV Y D+ RL I Sbjct: 329 GTHGIRHRATTDIANSGVPTKVGMKLTGHKTVAMFMHYVHTEDKPVRDAAELVANRRLAI 388 Query: 334 KNSRRISSV 342 +RR + Sbjct: 389 TGARRTEEM 397 >gi|320528018|ref|ZP_08029184.1| site-specific recombinase, phage integrase family [Solobacterium moorei F0204] gi|320131644|gb|EFW24208.1| site-specific recombinase, phage integrase family [Solobacterium moorei F0204] Length = 346 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 47/328 (14%), Positives = 101/328 (30%), Gaps = 36/328 (10%) Query: 25 FRKGHGRR--IRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSA 82 +R +G+R + A+ E + + + L + Y + Sbjct: 17 YRDQNGKRLQKKKRGFTTKREARAWE---------NETRDKLCRNVMDFRTLATTYFATL 67 Query: 83 HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HTPSSAIQFLTS 139 ++ D + D D R IT ++ + ++ LT Sbjct: 68 EVTR---STHDLRMRRLDTYMSLLLDQDVRDITKPIMQEWRVWLSEQDISSTTKNNILTL 124 Query: 140 MRVLFKWAVRQEYVAIN--PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197 + +F++ + + ++ + + ++ WT ++ QF + F Sbjct: 125 CKSIFRFGFQAYGLPDPAVVLRPFKKKPTEVKTMQVWTIDEFNQFIFVV-DNPVYHALFR 183 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------------ITVELPDGFMKL 244 L ++G+R ++ L N + T+ + + + Sbjct: 184 LLFWTGMRRGEALALTRDDLLPNNQISINKSFRRRIDGIGPTKNAASVRTITVDELTYRE 243 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA-GA 302 L E +I KQ ++ + F K AGV + H +R A+I + Sbjct: 244 LEAICAHAEGPYIFGGKQPISTQTVNQLFDRKVALAGVKRIRLHDLRHSHASILLNDPTI 303 Query: 303 TAHELMATYGWKTVDQAE-TYTKGADRI 329 + + A G V YT D+ Sbjct: 304 SVAAVSARLGHSNVATTMKVYTHVIDKA 331 >gi|170742030|ref|YP_001770685.1| integrase family protein [Methylobacterium sp. 4-46] gi|168196304|gb|ACA18251.1| integrase family protein [Methylobacterium sp. 4-46] Length = 380 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 51/378 (13%), Positives = 115/378 (30%), Gaps = 48/378 (12%) Query: 11 VTKERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 + K GKI + + G G+R R A+ + ++ P + Sbjct: 4 IRKRELPSGKIAWLASYTDGGGKR-RFRQFATRKEADAF--LTRARSEVAHGVHIPDSQS 60 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK 127 T+ + K A G L ++ + ++ + + I G ++TT + S E + Sbjct: 61 MTVGQAADAWLKHAEEGGLEWSTVLHYQQHVNEHIRPLIGSLRLTQVTTPRVYSFAEELR 120 Query: 128 HTPSS---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 S + + S+ +F++A + NP V+ + K + R + Sbjct: 121 AKGRSPEMVRRAVQSLGRIFRFAKGRGLAGQNPVADVKLKRSKRDQARVEIPTREELRAI 180 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT---GTIITVELPDGF 241 + + R +++ LR S+ + + ++ I + Sbjct: 181 LGAAQGRWRPLIVTAMFTALRASELRGLRWSDVDLKRRVLTVRQRADAWKRIGPPKSEAG 240 Query: 242 MKLLAMTPIGKETFFINNDKQK----------------MNATQFSIWFKAKATKAGV--- 282 + + + P+ T + + ++ AGV Sbjct: 241 TRDVPLAPMVVNTLREWRLACPKGELDLVFPSGAGQVEHHPNIIARGWEPTQIAAGVVEM 300 Query: 283 ----------------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325 + H +R +A++ ++G T + A G ++ +TY Sbjct: 301 VDGKDKAGNPAKAAKGRYNFHALRHAAASMFIESGMTPKRVQAIMGHSSIIVTYDTYGHL 360 Query: 326 ADRIRLGIKNSRRISSVV 343 R I + Sbjct: 361 FSDDEADQNAMRTIEERL 378 >gi|170730333|ref|YP_001775766.1| phage-related integrase [Xylella fastidiosa M12] gi|167965126|gb|ACA12136.1| phage-related integrase [Xylella fastidiosa M12] Length = 339 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 55/329 (16%), Positives = 103/329 (31%), Gaps = 23/329 (6%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 P + G + YY+ G R P + + L + Sbjct: 12 PRFRVRPQKSGVVYYYYDHGGKPRKETPLGRDYGLAIKRWAELEHAQITPAI-------A 64 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR 126 T + + YR A +++ Y + +++ D + I IR ++ R Sbjct: 65 VTFRHVAERYRAEVIPTK-ARSTQQMHHIYLNYLLQFFDDPPAPFEAIRPVDIRKYLDWR 123 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 SA + ++ ++ W + + +R E R +D + Sbjct: 124 PFK-VSANREISVFSHIWNW--ARSKGITDLANPCAGIRRNKESGRDVYIDDATYRAVYQ 180 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246 + R A + +G R SD +H+ N I KTG + + + L+ Sbjct: 181 AADQTLRDAMDLAYLTGQRVSDVLSMDERHIVNGALEICQAKTGAKLAIAITGELAVLIK 240 Query: 247 MTPIGKETFFINNDKQKMNATQF-------SIWFKAKATKAGVNKS---AHGVRKFSATI 296 K + + + ++ F FK AG+ K +R +AT Sbjct: 241 RIFDHKRGLKLRSTRLIVDEKGFGLGCMALRYRFKKARAAAGIAKQAFQFRDLRAKAATD 300 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKG 325 AD + A G +V E Y + Sbjct: 301 KADLAGDIRQAQAQLGHTSVVMTEHYVRK 329 >gi|170739481|ref|YP_001768136.1| integrase family protein [Methylobacterium sp. 4-46] gi|168193755|gb|ACA15702.1| integrase family protein [Methylobacterium sp. 4-46] Length = 383 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 47/351 (13%), Positives = 97/351 (27%), Gaps = 40/351 (11%) Query: 14 ERTRHG--KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + + G + +Y R R P F+ + A E R Sbjct: 14 KTLKDGTRRTYWYHRATGMRL--DGEPGSREFLLSVAEA--------EKTLKARHTGDNF 63 Query: 72 KWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 LI EY S + L+ +++ + + + GD + +R + Sbjct: 64 DGLIREYTASLEFTDKLSASTQREYRRMLAKAESEFGDMPREVLNDPAVRGDFLDWRAKV 123 Query: 131 SSAI------QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + A L+ + + WA + N +R W E + F Sbjct: 124 ARASGEREADNRLSVISAMLTWARENGRIHANHIQGFKRLYHVDRSEIIWLPEHIHAFMR 183 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT------VELP 238 Q L L++G R D +++ K+ + Sbjct: 184 VAPIELQRALIMA--LHTGQRQGDLLVLPWSAYDGTAITLRQGKSARGRRVAPLVAIPCT 241 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK------------SA 286 +L + + F+ ++ +AG+++ Sbjct: 242 QALRLMLDGMQRVSPLILTTKTGRALQKRYFARLWEEATIEAGLDRITLPGLAEPVSLHF 301 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR-LGIKNS 336 H +R + T+ ++AG ++ G + R R L + Sbjct: 302 HDLRGTAVTMLSEAGCQPQQIATITGHSLKTVTVILDRYLARTRALADQAI 352 >gi|116625160|ref|YP_827316.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] gi|116228322|gb|ABJ87031.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] Length = 301 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 41/271 (15%), Positives = 80/271 (29%), Gaps = 21/271 (7%) Query: 79 RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAI 134 + + + + + + ++ +HIR + RK P + + Sbjct: 16 LEELERRNYSQATARPYVGAIQRFAEHF-HRSPDQLGPEHIREYQLHLVQDRKLHPRTVM 74 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194 ++++R F+ +++ + + PK I D + + R Sbjct: 75 IQMSALRFFFRKVLKRRFDRD----DLPLPKLLRRQIPTVLSRDEVARLIAAAGNLRHRT 130 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAMTPIGK 252 L +G+R ++ C ++ + I+ K G V LP + L + Sbjct: 131 ILMALYATGMRRAELCHLRIEDIDKERMVLHIRQGKGGKDREVPLPPKLLAQLRIHYRAL 190 Query: 253 ETFFINNDK--------QKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGA 302 Q M + A +AG+ KS H +R AT D GA Sbjct: 191 PHRSAWVFPSLQSRRPDQPMTEKAVWHACRQAAWRAGITKSVHPHTLRHCFATHLLDNGA 250 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGI 333 + G Y R Sbjct: 251 ELPVIQVLLGHSDPRDTMIYLHLCTRQLRAA 281 >gi|237740351|ref|ZP_04570832.1| conserved hypothetical protein [Fusobacterium sp. 2_1_31] gi|294782552|ref|ZP_06747878.1| integrase/recombinase, phage integrase family [Fusobacterium sp. 1_1_41FAA] gi|229422368|gb|EEO37415.1| conserved hypothetical protein [Fusobacterium sp. 2_1_31] gi|294481193|gb|EFG28968.1| integrase/recombinase, phage integrase family [Fusobacterium sp. 1_1_41FAA] Length = 329 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 32/263 (12%), Positives = 84/263 (31%), Gaps = 14/263 (5%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS- 131 + + + H + S +++ + + +K D + ITT +R +++ + + Sbjct: 53 EYLEAFLSAKHVEGCSRKSLKYYKATIENLFKKI-DKSIKHITTNDLREYLDNYQKEGNA 111 Query: 132 ---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + F W ++Y+ +P + + K T ++ E M+ + + Sbjct: 112 SKITIDNIRRIFSSFFAWLEEEDYILKSPVRRIHKVKTGTVVKETYSDEAMEIMRD-NCK 170 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAM 247 + + L +G+R + + ++ + V L Sbjct: 171 SLRDLAIIDILASTGMRVGELVKLNIEDIDFEGRECVVFGKGDKERKVYFDARTKIHLHN 230 Query: 248 TPIGKETFFIN------NDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADA 300 ++ +++ + I + K + H R+ AT + D Sbjct: 231 YLKTRDDDNSALFVSLLKPHKRLQISGVEIMLRELGKKLNITKVHPHKFRRTLATKAIDK 290 Query: 301 GATAHELMATYGWKTVDQAETYT 323 G ++ G + +D Y Sbjct: 291 GMPIEQVQQLLGHQKIDTTLQYA 313 >gi|225575527|ref|ZP_03784137.1| hypothetical protein RUMHYD_03619 [Blautia hydrogenotrophica DSM 10507] gi|225037277|gb|EEG47523.1| hypothetical protein RUMHYD_03619 [Blautia hydrogenotrophica DSM 10507] Length = 356 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 48/352 (13%), Positives = 108/352 (30%), Gaps = 38/352 (10%) Query: 21 IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK 80 + Y+ G R + A ++ ++ T + + Y + Sbjct: 14 VKCYYTDHTGTRKQKKKRGFKLQRDAKEWERNFLETQQADLS------MTFENFVKIYNE 67 Query: 81 SAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR------KHTPSSA 133 L +S I + + +++ G +IT ++R + K P S Sbjct: 68 DMKHR-LREHSFIQKQYIINTKLLPFFGKLPVSQITPAYVRKWQNALIAYRDKKDKPYSE 126 Query: 134 IQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKR-KTEGIRPWTKEDMQQFKSFWSEG 189 T + + +AVR + NPC + + ++ WT ++ ++F S+ Sbjct: 127 TYLRTINNQLSAIMNYAVRYYDLKENPCRKAGSIGKGHADEMQFWTTDEFKRFLEKISDK 186 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------------I 233 R F L Y+GLR + + + +I K+ Sbjct: 187 PPARAGFLILYYTGLRIGELLALEYGDIDFDGCTINVNKSYQHINGKDVVTPPKTPKSVR 246 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKF 292 + +P+ + ++ F V + H +R Sbjct: 247 IISIPEFLRDEIKSYTERLYGLHKHDRIFPCTKHFFEHEIMRGTKDGEVKRIRLHDIRHS 306 Query: 293 SATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVV 343 A++ + G + + G + V+ TY+ R + + ++ + Sbjct: 307 HASLLIEMGFSPLAVADRLGHEKVETTLNTYSHLFPHKR--DEVAEKLQKLK 356 >gi|167561039|ref|ZP_02353955.1| prophage integrase [Burkholderia oklahomensis EO147] Length = 376 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 43/324 (13%), Positives = 103/324 (31%), Gaps = 24/324 (7%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 +R ++G ++ G RIR S A A ++ + T Sbjct: 5 KRQKNG-PWWFDLSIDGSRIR-QSSGTSDRRAAEELAAKVASDYWRQKKLGERPAVTWDA 62 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK------ 127 + + K ++ + + + R I + I++ +E++ Sbjct: 63 AVVHWLKQNQHQRSLETTKQR----LRWLTDQLKGENVRNIDRERIQALIETKAAEKYRG 118 Query: 128 --HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 ++ + + ++ V+ + ++ P + + + + + T+ Q+ Sbjct: 119 SPVAGATVNRHMAALSVILHHCHAEGWIDAVP--PIRKLRENSARLTWLTRAQAQRLL-- 174 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGF 241 + R F L +GLR S+ + + K G +I+V L + Sbjct: 175 EELPTHLRQMTRFALATGLRESNVRQLEWAQVDRERALAWIHADQAKAGKVISVPLNEDA 234 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADA 300 + +L + + + ++ ++ +AG+ H +R A+ A Sbjct: 235 LGVLREQQGQHKRYVFVYKGAPI-GRIYNHAWQKACVRAGLSGLRFHDLRHTWASWHVQA 293 Query: 301 GATAHELMATYGWKTVDQAETYTK 324 G L GW + Y Sbjct: 294 GTPLPILQQLGGWASYQMVLRYAH 317 >gi|86608861|ref|YP_477623.1| phage integrase family site specific recombinase [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557403|gb|ABD02360.1| site-specific recombinase, phage integrase family [Synechococcus sp. JA-2-3B'a(2-13)] Length = 330 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 50/323 (15%), Positives = 100/323 (30%), Gaps = 37/323 (11%) Query: 51 LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110 +G + + P +L L +++ + LA SR ++ +Q + Sbjct: 5 RSGWAQETHPQSQPTGPVPSLSHLAAQFLQERQ-RDLAPASRRTYRIALEQFAKTCP-VP 62 Query: 111 YRKITTKHIRSGVESRKH---------------TPSSAIQFLTSMRVLFKWAVRQEYVAI 155 ++ H++S + S K +P++ +++ F+WA ++ Y+ Sbjct: 63 LPQVQPAHVQSFLNSLKGRPFRNRSGQRIHPPASPATYNLKRLALQQFFEWASQRGYLQD 122 Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQF--KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213 RP R + + Q + + + +L GLR + Sbjct: 123 PLPTQAIRPARLPARLPRDLDRLLLQRVLQRAQNHSLRYAALIRLMLECGLRAQELLDLT 182 Query: 214 VQHLQNNIF----SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN----------- 258 VQ Q + ++ K V + D +LL + Sbjct: 183 VQDFQISPEGSLLEVRCGKGSKPRAVAVGDPLSELLQQYLSRERGPCAPTDPLFVSQSRC 242 Query: 259 --NDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTV 316 + + +++ H R AT+ D G + G T Sbjct: 243 LAYRGRPLTYDGLRHIVLKLTEPEPGHQTPHQFRHSFATLLLDRGVAPEHIQHLLGHTTA 302 Query: 317 DQAETYTKGADRIRLGIKNSRRI 339 YT+ A+ +R I SR I Sbjct: 303 AMTMRYTQRAN-LRAAIARSREI 324 >gi|255012270|ref|ZP_05284396.1| putative bacteriophage integrase [Bacteroides sp. 2_1_7] Length = 411 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 39/291 (13%), Positives = 97/291 (33%), Gaps = 23/291 (7%) Query: 59 EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYR 112 E P+ T + + + A+ + +ES + D + Sbjct: 105 EEKEEPKTLIATFQEHNDQ-CRQLVGKDFALVTVRRYESCKRYLAELIKIKYDKEDLPLK 163 Query: 113 KITTKHIRSGVESRK----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168 I + IR+ K + ++ I+++ ++ + ++ E++ +P ++ K Sbjct: 164 DINGEFIRAFDFYLKTEKECSQNTVIRYMKCLKKITNLSLANEWINKDPFTGIKF-HEKE 222 Query: 169 EGIRPWTKEDMQQFKSFWSEGSQ---PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225 T +++Q + + + R F F Y+GL D + +H+ + Sbjct: 223 VNREFLTWDELQIITNKKFDLPRIDLVRDIFIFGCYTGLSFIDIKQLTAEHIVKDREGNF 282 Query: 226 TQKTGTIITVELPDGFM-----KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280 + T + + + ++ + N + + + K + Sbjct: 283 WIRKARQKTKNMCNIPLLDIPLAIIEKYKDNPKCQKQNVLLPVPCNQKMNSYLKEISDLC 342 Query: 281 GVNK--SAHGVRKFSATI-SADAGATAHELMATYGWKTVDQAETYTKGADR 328 G++K S H R AT G + + G ++ + Y + D+ Sbjct: 343 GIHKEISTHTARHSYATSVCLANGVSIENVAKMLGHSNINMTKRYARVLDQ 393 >gi|239917481|ref|YP_002957039.1| site-specific recombinase, integrase family [Micrococcus luteus NCTC 2665] gi|281414028|ref|ZP_06245770.1| site-specific recombinase, integrase family protein [Micrococcus luteus NCTC 2665] gi|239838688|gb|ACS30485.1| site-specific recombinase, integrase family [Micrococcus luteus NCTC 2665] Length = 396 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 46/387 (11%), Positives = 93/387 (24%), Gaps = 63/387 (16%) Query: 11 VTKERTRHGKIIYYF-RKGHGRRIRLPYPHESTFIPAYMSALTG-------STPKREYIN 62 + + G+ Y GR LP + + + E Sbjct: 4 IQTRTNKAGRTTYRVGFYEAGRFQWLPALAREAGAQRVKAIVEDPRQGPTVARRILEAQV 63 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFES-YFDQIIRKSGDFDYRKITTKHIRS 121 TL Y + + +E+ + + G+ I + + Sbjct: 64 DSAPGMPTLAEFFPRYIEHRGLR-CTPGTLAGYEAEAARTFLPRLGELPVDMIDRRTVAE 122 Query: 122 GVESR----------------------------KHTPSSAIQFLTSMRVLFKWAVRQEYV 153 + + +P + + + AV++ + Sbjct: 123 WIRWQLQQPTARWRAAAARAAAATPPRPEPPLATVSPKTVRNAHALLSAVLGLAVQEGIL 182 Query: 154 AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213 NP + P E R S L L +G R ++ Sbjct: 183 PANPARGADLPDDDVEEERGIFSRAEWARFYAAISESYQPLLIVL-LVTGARWGEATALQ 241 Query: 214 VQHLQNNIFSIKTQKTGT----------------IITVELPDGFMKLLAM----TPIGKE 253 V+ L I ++ T+ LPD ++ L + Sbjct: 242 VRDLDVAASVIHVRRAWKKGKEGAVLGVPKTARGRRTIMLPDWAVETLEPLAAGRAADEF 301 Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATY 311 +K AG+ + + H +R A+ + G A + Sbjct: 302 LLTAPGGGVIHRTNFVERHWKPALAAAGIAKHLTPHSLRHTFASWALMDGVPAQVVQHRL 361 Query: 312 GWKTVDQAET-YTK-GADRIRLGIKNS 336 G +++ Y D R + Sbjct: 362 GHESLQTTSRVYAHLLLDAQRAAVDAI 388 >gi|293410219|ref|ZP_06653795.1| conserved hypothetical protein [Escherichia coli B354] gi|291470687|gb|EFF13171.1| conserved hypothetical protein [Escherichia coli B354] Length = 333 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 47/329 (14%), Positives = 94/329 (28%), Gaps = 32/329 (9%) Query: 14 ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + GK + Y G+RIR + +Y L S E+ + + L Sbjct: 4 RKIPSGKWLCECYPYGASGKRIR-KQFATKSEALSYERRLMNSRVGDEFQDGSGPR---L 59 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----- 126 LI+ + + +L+ + + I + GD + + E R Sbjct: 60 SELIARWFEMYG-KTLSSG--AERKVKLEAICSRLGDPFASQFDKNMFATYRERRLSGEW 116 Query: 127 ------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 K + ++ + + + +F R + L+ R R+ E + D Sbjct: 117 NPKGKKKLSEATVNREQSYLHAVFAELKRLGEWSGENPLTGIRKFREEEKELAFLYVDEI 176 Query: 181 QFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237 + + S+ + + L +G R S++ + + K TV + Sbjct: 177 ERLLISCDESRNKDLGVVVRIGLATGARWSEAEGLKQSQVLPCRITFVKTKGKKNRTVPI 236 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATIS 297 +L + F K + + H +R A+ Sbjct: 237 SPQLQAMLPKKRGALFSPC---------YEAFDAAIKRAKIELPDGQLTHVLRHTFASHF 287 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGA 326 G L G + Y A Sbjct: 288 MMRGGNILVLQKILGHSDIKMTMRYAHFA 316 >gi|283798849|ref|ZP_06348002.1| phage integrase [Clostridium sp. M62/1] gi|291073387|gb|EFE10751.1| phage integrase [Clostridium sp. M62/1] Length = 363 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 48/362 (13%), Positives = 104/362 (28%), Gaps = 43/362 (11%) Query: 18 HGKIIY---YFRKGHGRRIR-LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 +G Y R+ + + + + + + Sbjct: 9 NGTWYVMSRYVNWKGERKQKCKRGFATKREAQEWERIFQ--------LQNSSDMDMSFEA 60 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR------ 126 Y + L N+ ++ E +I+ G +I+TK + + Sbjct: 61 FTELYIRDMKSR-LKENTWMTKEHIIRTKILPYFGKLKISEISTKEVIAWQNEMLAYRDD 119 Query: 127 KHTPSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQF 182 K P S + +F AVR + NP + WT+E+ ++F Sbjct: 120 KRKPYSQTYLKTLHNQLSAIFNHAVRYYELRSNPAAKAGNMGSEEHKEMLFWTREEYKKF 179 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------- 232 + AFE L + G+R + +++ K+ Sbjct: 180 SFEIMDKPISFYAFEMLYWCGIREGELLALTAADFDFEKETVRINKSYQRLHGEDVITTP 239 Query: 233 ------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-S 285 T+++P + + + + + A AGV + Sbjct: 240 KTKKSNRTIKMPKFLCEEMQEYLQMLYGLKKKDRIFTITKSYLHHEMDRGAKAAGVKRIR 299 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345 H +R ++ D G +A + G +++D Y + + + R+ V Sbjct: 300 IHDLRHSHISLLIDMGFSAVAIADRVGHESIDITYQYAHLFPSKQ--TEMADRLDDVGKG 357 Query: 346 DD 347 + Sbjct: 358 EF 359 >gi|187933384|ref|YP_001886557.1| tyrosine recombinase XerD [Clostridium botulinum B str. Eklund 17B] gi|187721537|gb|ACD22758.1| tyrosine recombinase XerD [Clostridium botulinum B str. Eklund 17B] Length = 292 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 27/258 (10%), Positives = 77/258 (29%), Gaps = 20/258 (7%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVESRKHT 129 I+ Y++ + N+ ++ + ++ K+T + + Sbjct: 5 INNYKEYLFDSGKSENTIYAYVTDVTLYLKFLDKKGIDVYKSDKLTVMAYIQYLLESGKS 64 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT----KEDMQQFKSF 185 S + + S+R + + Q + P + + K + + T + ++ + Sbjct: 65 ERSINRIVISLRSFYSYLKSQSLINEVPKIEYKSSKNNRKLPQILTVDEVDKIIRTVEKD 124 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-TGTIITVELPDGFMKL 244 +G + E + +G++ S+ V + + ++ + + + Sbjct: 125 CPKGIRDNALLELMYATGMKVSELISLNVDDINLELHFVRCTDSRNFERLIPIGRSACRA 184 Query: 245 LAMTPIGKETFFINNDKQ--------KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294 L + K+ K + +A ++K + + R A Sbjct: 185 LNEYLSIRYKIAECGVPNLFVNLNGNKLTRQGIWRIVKEYSKRAHIDKDVNLNTFRHSFA 244 Query: 295 TISADAGATAHELMATYG 312 GA + G Sbjct: 245 VHLLQNGANVRAVQKLLG 262 >gi|311110801|ref|ZP_07712198.1| integrase/recombinase, phage integrase family [Lactobacillus gasseri MV-22] gi|311065955|gb|EFQ46295.1| integrase/recombinase, phage integrase family [Lactobacillus gasseri MV-22] Length = 295 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 36/274 (13%), Positives = 88/274 (32%), Gaps = 14/274 (5%) Query: 62 NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121 PRK+ + K ++++ ++ + + ++ +Q++ K R+ITT+ +R Sbjct: 8 REPRKRKISNKEYLAKFLEAKKMEGCSDRTIKYYKVTVEQLLAKV-IRPIRRITTEEMRE 66 Query: 122 GVESRK----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 + + ++ ++ F W ++Y+ +P + + + + T E Sbjct: 67 YLVEYQKINNCGKTTIDNIRRNISSFFSWLEEEDYILKSPMRRIHKIRAEKLVKNVITDE 126 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236 D+++ + + L +G+R + R + + V Sbjct: 127 DIEK-LRDGCSCLRDVAMIDLLYSTGIRVGELVRLNRNDINFSERECVVFGKGDKERRVY 185 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNAT------QFSIWFKAKATKAGVNK-SAHGV 289 L +E I + K +++ H Sbjct: 186 FDAKSKVHLINYLRSREDDNPALFVSLDKPNDRLKISGVEIRLRQLGRKLHLDRIHPHKF 245 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323 R+ AT + D G ++ G +D Y Sbjct: 246 RRSMATRAIDKGMPIEQVQKILGHSQIDTTMQYA 279 >gi|190410500|ref|YP_001965320.1| putative integrase [Streptococcus thermophilus] gi|84316431|gb|ABC55707.1| putative integrase [Streptococcus thermophilus] Length = 314 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 38/286 (13%), Positives = 88/286 (30%), Gaps = 32/286 (11%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129 T I+ Y + + + +++ Q R+ + + + + K + Sbjct: 24 TFDRFIN-YLDA------SPKTVETYKKALRQFFNYLAINGIRQPQREDVLAFRDDLKAS 76 Query: 130 ---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK--- 183 P++ ++T+ R+ FKW ++ K T ++ Sbjct: 77 GLKPTTVQNYITATRIFFKWTEQEGLYPNIAEHVKGAKLDKNHKKDYLTSRQAKEVLASI 136 Query: 184 -SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242 + EG + ++ GLR + RA V L+ + G + + Sbjct: 137 ETDTEEGLRNYAILSLMVTGGLRTIEVSRADVGDLRTVGENTVLFLQGKGREEKTEYIKI 196 Query: 243 KL---------------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---K 284 + + N+ ++++ S K AG + Sbjct: 197 SAPVEKAIRNYLKARGNVEEGQPLFTSTSNNSRGKRISTRTVSAIVKNALKNAGYDSARL 256 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 +AH +R + T++ AG E+ ++ Y D+ + Sbjct: 257 TAHSLRHTAITLALLAGREITEVQQFARHANLNTTMIYNHALDQAK 302 >gi|296110177|ref|YP_003620558.1| integrase [Leuconostoc kimchii IMSNU 11154] gi|295831708|gb|ADG39589.1| integrase [Leuconostoc kimchii IMSNU 11154] Length = 360 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 34/340 (10%), Positives = 89/340 (26%), Gaps = 27/340 (7%) Query: 11 VTKERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 + R R Y ++ G+ +L A +A + S + Sbjct: 1 MVSYRKRGSVWQYEISYKDTSGKYKKLRKSGFPRKSDAISAA-AQLQTNHPNLISFQSGK 59 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK- 127 + +++ + I +++ + ++ + + Sbjct: 60 QLFSDYFEHWINLYKKPTVSKITFIKYQNTLQHAKQLFKGIRLSDLSRTVYQQKINKFSE 119 Query: 128 -HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP-KRKTEGIRPWTKEDMQQFKSF 185 H+ + F ++ A ++ ++I+P + ++ + Sbjct: 120 THSIRTVHTFHKQLKSALLDAFDEKIISIDPTRKTVINGTPPRKQRMTLDYKETKLLVKH 179 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--------------- 230 L + +G+R ++ + I KT Sbjct: 180 LDLNMLEDLVIYVAIVTGMRFAEILGLTPADIDTQNNIISITKTWDYKFNSGFKPTKTKS 239 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK----AGV-NKS 285 + + + +K + + N + + S + G+ Sbjct: 240 SQRDIVVDSETIKAIQKFVSHHKIPETNPIFVYNSHSIVSAEINKILSSKLNGLGIARIP 299 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 HG+R A+I +G + G V +TY Sbjct: 300 FHGLRHTHASILLYSGVNLLSVSKRLGHSNVTTTQQTYLH 339 >gi|282879915|ref|ZP_06288640.1| phage integrase domain protein [Prevotella timonensis CRIS 5C-B1] gi|281306217|gb|EFA98252.1| phage integrase domain protein [Prevotella timonensis CRIS 5C-B1] Length = 292 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 32/266 (12%), Positives = 83/266 (31%), Gaps = 24/266 (9%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRKHT 129 I E+ + + + + ++ + I + IR +ES Sbjct: 2 IKEFLDYLRFEKNRSALTVKNYGKDLMAFEEFFRLLEPQLSWESIDSNIIRDWMESMMDR 61 Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-----QQ 181 +S + L+++R +++A+ + V +P +++ PK+K + + +M + Sbjct: 62 GNNATSINRRLSALRSFYRFALTRGLVDKDPTITIVGPKKKKPLPQFVKESEMDALLAFK 121 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDG 240 + + E +G+R ++ + S K + Sbjct: 122 LEVNQYKDVLAHTLVETFYCTGMRLAELIGLDEASIDFAHQSLKVLGKRNKERYIPFGAE 181 Query: 241 FMKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKAG--VNKSAHGVR 290 + L ++ Q++ Q + ++ H +R Sbjct: 182 LKESLQYYISIRDQQVQRQSTAFFVDKDGQRLTHNQVRYAVNKCLSTVTTLKKRTPHVLR 241 Query: 291 KFSATISADAGATAHELMATYGWKTV 316 AT + GA + G +++ Sbjct: 242 HTFATAMMNHGAGLESVQQLLGHQSL 267 >gi|241992607|gb|ACS73659.1| IntI1 [uncultured bacterium] Length = 315 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 35/302 (11%), Positives = 85/302 (28%), Gaps = 52/302 (17%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132 ++ + R+ + ++ + ++ + IR G + + + + + + S Sbjct: 16 VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 ++ L + + + + RP+ T +++ + + Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230 RL + L +G+R S+ + V+ L + +I ++ Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193 Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265 ++ + A + + M Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWLWVFAQHTHSTDPRSGVVRRHHMY 253 Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 F FK +AG+ K + H +R AT +G + G V YT Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313 Query: 324 KG 325 Sbjct: 314 HV 315 >gi|330963829|gb|EGH64089.1| site-specific recombinase, phage integrase family protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 355 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 49/350 (14%), Positives = 112/350 (32%), Gaps = 28/350 (8%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 +T G RK + + YI + TL+ Sbjct: 6 KTAAGTWKALVRKTGWP-TNTKTFRTKRDAEDWARRTEDEMVRGVYIQRSGSERMTLEMA 64 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-------- 126 + Y ++ + + Q+I G + ++ + I ++R Sbjct: 65 LKRYLSEISPTK-KPTTQRAEATKAQQLISHLGKYSMAALSAEIIAGYRDTRLASITNRG 123 Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + ++ L + LF A+++ + + NP L++ +P R + E+ ++ Sbjct: 124 KPTSNNTVRLELALLSHLFTVAIQEWGLGLSFNPVLNIRKPSTGEGRDRRLSAEEERRLL 183 Query: 184 SFWSEGSQPRLAFEFL--LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------IITV 235 + + S P L + L +G+R S+ + ++ T ++ Sbjct: 184 TAVNNHSNPMLGWIVRIALETGMRSSEITSLRRHQVDMKKRVVRLSDTKNDSARTVPLSK 243 Query: 236 ELPDGFMKLLAMTPIGKETFFINN----DKQKMNATQFSIWFKAKATKAGVN-KSAHGVR 290 + F L + + K + F+ + TK G+ H +R Sbjct: 244 WATETFQAALNNPIRPIDCDLVFFGEPGKNGKRSPYAFTKTWGLLKTKLGMPDLRFHDLR 303 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 + + + G + E+ A G K++ + YT R + ++ Sbjct: 304 HEAVSRLVEGGLSDQEVSAISGHKSMQMLKRYTHL--RAEDLVSKLDKLD 351 >gi|320161568|ref|YP_004174792.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1] gi|319995421|dbj|BAJ64192.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1] Length = 292 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 41/295 (13%), Positives = 86/295 (29%), Gaps = 33/295 (11%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-----DFDYRKITTKHIRSGVESR- 126 + + + + + + Q R +T +R Sbjct: 5 QAFEAWLRE---QDRSDVTVRGYLADMSQFERWFEQTNGRGLRVEDVTPADVREYRAWLQ 61 Query: 127 ---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 K + ++ + L ++R +W + + NP ++ P+ + + + + Sbjct: 62 TVQKASAATIRRRLMALRAYCRWGMAAGKIERNPTARLKMPREEKLSPGWLERSEQWRLV 121 Query: 184 SFWSEGS-------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKT 226 G + FLL++GLR S++C V +Q +++ Sbjct: 122 REAERGIQAADTPARRRLAVRDWALVVFLLHTGLRVSEACAVEVSDVQMGERSGWVQVRS 181 Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA 286 K V L + L + + + +AGV Sbjct: 182 GKGAKARKVPLNAEARRALKAWLEERGGQPGRMFEM--TVSGVQRRLAEMGRRAGVEVHP 239 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 H +R A DAG E+ A G +++ Y R + R+ Sbjct: 240 HTLRHTLAKNLVDAGVGLQEVAALLGHSSLNATRVY--VTPGERDLERALSRLEG 292 >gi|241992647|gb|ACS73687.1| IntI1 [uncultured bacterium] Length = 315 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 35/302 (11%), Positives = 84/302 (27%), Gaps = 52/302 (17%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132 ++ + R+ + ++ + ++ + IR G + + + + + + S Sbjct: 16 VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 ++ L + + + + RP+ T +++ + + Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----------------------TQKTG 230 RL + L +G+R S+ + V+ L + +I ++ Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLP 193 Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265 + + A + + M Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253 Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 F FK +AG+ K + H +R AT +G + G V YT Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313 Query: 324 KG 325 Sbjct: 314 HV 315 >gi|262046670|ref|ZP_06019631.1| integrase [Lactobacillus crispatus MV-3A-US] gi|260573119|gb|EEX29678.1| integrase [Lactobacillus crispatus MV-3A-US] Length = 361 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 38/346 (10%), Positives = 93/346 (26%), Gaps = 35/346 (10%) Query: 16 TRHGKII----YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 R +Y +G R + + + N + T Sbjct: 6 KRGATWRAQVSWYDDQGKRRFKTKQGFLTKSAARKW----ANEMEVAKDDNKISDQNPTF 61 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HT 129 EY + A ++ + + G+ K+ + +S + H Sbjct: 62 AQAYEEYTNTYKIPGKATTTQRRYNYSITIVKNYFGNVKLTKMNRQRYQSFLNDYGKNHA 121 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE--RPKRKTEGIRPWTKEDMQQFKSFWS 187 ++ ++ + + + N V + ++ +++Q+ Sbjct: 122 KTTVRLLNRYIKAFVHDCLSDKLITNNFTDRVNLTWNDSHSHKVQYLNYKEVQKLLESLE 181 Query: 188 EGSQP----RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------------ 231 +P R +Y+G+R + + IK K+ + Sbjct: 182 SNIKPTYISRYMIITAIYTGMRIGEIMALKWTDIDFKKHLIKVTKSYSYLDGKIKEPKTE 241 Query: 232 --IITVELPDGFMKLLAMTPIGKETFFINNDKQKM-NATQFSIWFKAKATKAGV---NKS 285 + + + + LL + F K+ T + K + K + + Sbjct: 242 SSKRVIRVSENLLDLLKQLKANHQKFVFMTQSGKIITTTAANQTLKKQLKKLNISKNHFH 301 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330 H +R + G + + G ++ Y D +R Sbjct: 302 FHSLRHTHVALLLFKGVPLYAISKRLGHSSMSMTASVYAYMLDELR 347 >gi|326407821|gb|ADZ64892.1| integrase [Lactococcus lactis subsp. lactis CV56] Length = 378 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 43/315 (13%), Positives = 101/315 (32%), Gaps = 41/315 (13%) Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122 + T++ + +++K L ++ + F+ +++ G+ D ++I I+S Sbjct: 61 AEEIPNLTIQEVFDDWQKIRK-EELKPSTFHVGKMAFNTFLKRFGEMDIKEINPDQIQSF 119 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + + + +PS+ S +LF +A Y+ NP V PK K K++ Sbjct: 120 LFNSQLSPSTRSLRKNSFNLLFTYAKNVGYIEANPVERVVLPKEKNTIEELKKKQNKFLN 179 Query: 183 KSFWSE----------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN------------- 219 + L +EFL +GLR + + + Sbjct: 180 LEEMRIILEKNKPIEKDIRKLLIYEFLFLTGLRIGEVQALRWEDVDFEKKTLAVTHTLNH 239 Query: 220 ------NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK---MNATQFS 270 N + + + T+ + D +++L + + + Sbjct: 240 QGTSEKNRQLLSPKTINSYRTISINDRCLEILNYFYSHLTDELFIFVNKHGDTYCYSILA 299 Query: 271 IWFKAKATKAG-----VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ-AETYTK 324 FK G + H +R ++ + G +M G + Y+ Sbjct: 300 RHFKKVCQVLGEETSQRKYTLHMLRHSHISLLIEIGIPIKTIMERVGHSNEQMILQIYSH 359 Query: 325 GADRIRLGIKNSRRI 339 ++ + ++ Sbjct: 360 VT--KKMEEDLANKL 372 >gi|294793172|ref|ZP_06758318.1| integrase/recombinase, phage integrase family [Veillonella sp. 6_1_27] gi|294456117|gb|EFG24481.1| integrase/recombinase, phage integrase family [Veillonella sp. 6_1_27] Length = 329 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 34/276 (12%), Positives = 81/276 (29%), Gaps = 14/276 (5%) Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119 + T + L+ + + + S + + D + K + + R+ T + Sbjct: 40 ETEEEVNEALTNEQLLERFLAAKRIEGCSEKSLAYYRTTIDAMTAKV-EKNVRETETDDL 98 Query: 120 R----SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 R + + + + + F W ++Y+ +P + + K +T Sbjct: 99 RTYLTEYQQEKNSSKVTVDNIRRILSSFFSWLEDEDYILKSPARRIHKVKAALTIKETYT 158 Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIIT 234 E +++ + E + + L +G+R + + Sbjct: 159 DEALEKMRDSC-EEPRDLALIDMLASTGMRVGELVLLNRDDINFEERECVVFGKGSKERM 217 Query: 235 VELPDGFMKLLAMTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAH 287 V L + +++ + + K + K H Sbjct: 218 VYFDARTKIHLQNYLQERTDDNPALFVSLRAPHERLQSGGVERRLRELGKKLDIEKVHPH 277 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 R+ AT++ D G +L G K +D Y Sbjct: 278 KFRRTLATMAIDKGMPIEQLQQLLGHKRIDTTLQYA 313 >gi|291530639|emb|CBK96224.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3] Length = 310 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 40/306 (13%), Positives = 96/306 (31%), Gaps = 37/306 (12%) Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVES 125 T+ + + +++ + ++ ++ + I+ GD +T K ++ V Sbjct: 3 TEKTIAEMANLWKEEKR-QFVKKSTYAAYSLIVETHILPAFGD--LTTVTEKDVQEFVLQ 59 Query: 126 RKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + + + L +R++ K+ +++Y A P + R+ + + + + ++ Sbjct: 60 KLQSGLSQKTIKDMLIVLRMILKFGAKKQYCAYVPFDVIFPTDREKQELDVLSVVNQRKI 119 Query: 183 KSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 S+ + R L L +G+R + C + + I +KT I V Sbjct: 120 VSYVRDNFTFRNLGILICLSTGIRIGEVCALTWDDIDIDNGVIHIRKTIQRIYVNEGGVR 179 Query: 242 MKLLAMTPIGKETFFINNDKQ--------------------------KMNATQFSIWFKA 275 L + T + + ++K Sbjct: 180 KTELLIDTPKTATSMRDIPMIKELYEVLKPLKKVVRSDYYVLTNDAEPTEPRTYRNYYKR 239 Query: 276 KATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLG 332 K G+ HG+R AT ++ + G + Y ++ + Sbjct: 240 LLDKLGIPPIKFHGLRHSFATRCIESKCDYKTVSVILGHSNISTTLNLYVHPNYEQKKRC 299 Query: 333 IKNSRR 338 I R Sbjct: 300 IDKMFR 305 >gi|5824355|emb|CAB54522.1| Int protein [Enterobacteria phage WPhi] Length = 326 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 43/306 (14%), Positives = 94/306 (30%), Gaps = 21/306 (6%) Query: 26 RKGHGRRIRLPYPHESTF--IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83 R G+RIR + ++ Y A R TL L+ + K H Sbjct: 18 RGRDGKRIRRKFERKAEAVAFERYTIAYASQKE----WAGQRADRRTLSELLDIWWK-YH 72 Query: 84 WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSM 140 + ++ +Y + I GD +++ + + R + ++ + + + Sbjct: 73 GQNHEHGTKEF--NYLLKTISGIGDIPVSRMSKRALMDYRSMRLRDGISAATINRDMYRL 130 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200 +F ++ + + + P + + ++ + G L L Sbjct: 131 SGMFTKLIQLDEFSGQHPIHGLPPLAEANPEMTFLEKAEIEKLLNVLAG-DDLLVALLCL 189 Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND 260 +G R ++ + N + K G TV ++ K + Sbjct: 190 STGGRWTEVATLKPAQITNCRVTFLKTKNGKKRTVP--------ISEELEKKVKEEASAK 241 Query: 261 KQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320 K++ +F + N++ H +R A+ G L G ++ Q Sbjct: 242 LFKVDYEKFCGILRRVKPDIPPNQATHILRHTFASHFMMNGGNIIALQQILGHASIQQTM 301 Query: 321 TYTKGA 326 Y A Sbjct: 302 AYAHLA 307 >gi|86605557|ref|YP_474320.1| phage integrase family site specific recombinase [Synechococcus sp. JA-3-3Ab] gi|86554099|gb|ABC99057.1| site-specific recombinase, phage integrase family [Synechococcus sp. JA-3-3Ab] Length = 309 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 50/304 (16%), Positives = 96/304 (31%), Gaps = 37/304 (12%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH- 128 +L L+ ++ + LA SR ++ +Q + ++ H++S + S K Sbjct: 3 SLSQLVGQFLQERQ-RDLAPASRRTYRIALEQFAKTCP-VPLPQVQPSHVQSFLNSLKGR 60 Query: 129 --------------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 +P++ +++ F+WA ++ Y RP R + Sbjct: 61 PFRNRSGQWVHPPASPATYNLKRLALQQFFEWASQRGYFPDPLPTQAIRPARLPARLPRD 120 Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIF----SIKTQK 228 + Q ++ R A L GLR + VQ Q + ++ K Sbjct: 121 LDRLLLQRVLQRAQSHSLRYAALIRLLLECGLRAQELLDLTVQDFQISPEGSLLEVRCGK 180 Query: 229 TGTIITVELPDGFMKLLAMTP-------------IGKETFFINNDKQKMNATQFSIWFKA 275 V + D +LL ++ + + Sbjct: 181 GSKPRAVAVGDPLSELLQQYLSRERGPCAPTDPLFVSQSRCPAYRGRPLTYDGLRHIVLK 240 Query: 276 KATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 +++ H R AT+ D G + G T YT+ A+ +R I + Sbjct: 241 LTEPEPGHQTPHQFRHSFATLLLDRGVAPEHIQHLLGHTTAAMTMRYTQRAN-LRAAIAH 299 Query: 336 SRRI 339 SR I Sbjct: 300 SRAI 303 >gi|255973229|ref|ZP_05423815.1| conserved hypothetical protein [Enterococcus faecalis T1] gi|255964247|gb|EET96723.1| conserved hypothetical protein [Enterococcus faecalis T1] Length = 376 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 50/355 (14%), Positives = 113/355 (31%), Gaps = 41/355 (11%) Query: 14 ERTRHG-KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 ++ + G + ++ GR ST A ++A + + + Sbjct: 5 KKLKSGWQFRVSYKDKDGRYKTKSGNGFSTKKEAQLAASEIEARYSKGYSLKEGEKL-FH 63 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132 + + G L+ ++ D + D +++T + + + T ++ Sbjct: 64 EYFRNWFEVYRKGKLSQDNDGDIRRAVDFSEKYFPDTKLKELTRQEYQKALNDYGETHAT 123 Query: 133 A--IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-- 188 A + T MR K A+ + + +P V+ +K + Q+ E Sbjct: 124 ASVKKHHTYMRAALKDALEEGIIHRDPTYRVQAIGKKNPKHEELKYLNYQESIHLVHEIL 183 Query: 189 -----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG------------- 230 R F + +G R S+ + ++K KT Sbjct: 184 EGIKPTYTSRFIILFGIATGCRFSEIIGMTWDCIDFKNKTVKVNKTWDYKYTNTFSNTKN 243 Query: 231 --TIITVELPDGFMKLLAMTPIGKETFFI-------------NNDKQKMNATQFSIWFKA 275 + + + D + LL + ++ +++ N++ + ++ T + + Sbjct: 244 YQSKRIITIDDDTLDLLKKLQLHQKEYYLKSGLRNENNLVFLNDNMELVSNTAVNKVLRK 303 Query: 276 KATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADR 328 K G + HG+R A+I G + G K + +TY D Sbjct: 304 FCRKIGTKELTCHGLRHTHASIMLYKGINIKYVSRRLGHKDIVTTLQTYQHILDE 358 >gi|239907829|ref|YP_002954570.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1] gi|239797695|dbj|BAH76684.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1] Length = 366 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 44/356 (12%), Positives = 88/356 (24%), Gaps = 48/356 (13%) Query: 17 RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK--------- 67 R G+ + Y+ +G R + AY AL K+ R + Sbjct: 6 RDGRWMVYYTDVNGARRDKSFGRG---DNAYAEALAFDQEKKSASKQSRGEVSSSVSIES 62 Query: 68 ----------------PTTLKWLISEYRKSAHWGSLAV-NSRISFESYFDQIIRKSGDFD 110 K L +Y + N++ + +Q GD Sbjct: 63 EQPVKSEEVLVNTSPFEIIFKDLADKYIEHLEVSGRTETNTKKLKKMIENQFNPLIGDKV 122 Query: 111 YRKITT-------KHIRSGVESRKHTPS---SAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 ++T I + P + ++ + +F + V +NP Sbjct: 123 VNEMTYVDDMVPFIKIFQNTPGKSGKPRSQLTVNRYGDYVNAIFNFGVAMGLTKVNPMRG 182 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220 + E R + S R A E G R +S ++ + Sbjct: 183 RRK---SKEKPREIQLTVEDIKRIMECAESHIRWAMEVCFNLGTRPGESELLALKWEHID 239 Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW---FKAKA 277 + + L + + + + F+ Sbjct: 240 FEKSVARIYASKTKTYRIVPISAKLLEKMRSRMAESTSGYVVDYRGERIGMIRKGFRGAC 299 Query: 278 TKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIR 330 +A + + +R AT GA + G + Y + + Sbjct: 300 QRAKINYPVRMYDLRHLFATTMLSKGADLAAVSKLLGHSMISTTTSHYYHCLESEK 355 >gi|28871200|ref|NP_793819.1| site-specific recombinase, phage integrase family [Pseudomonas syringae pv. tomato str. DC3000] gi|28854450|gb|AAO57514.1| site-specific recombinase, phage integrase family [Pseudomonas syringae pv. tomato str. DC3000] Length = 325 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 62/334 (18%), Positives = 119/334 (35%), Gaps = 36/334 (10%) Query: 1 MTPSLR---LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPK 57 M P + LPP + +HG Y+ G+ RL + AY + G + Sbjct: 1 MRPRKKDRHLPPCMYL---KHG---AYYLVRKGKWERLGSDF-QEALLAYAKIVGGKSNG 53 Query: 58 REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117 + LI E + L+ N+ +E+ ++ +F+ R++ + Sbjct: 54 GMSL------------LIDEALDAMR-RRLSENTIKQYEAASVRLKTYLEEFEPRQVLPR 100 Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 H+ + TP+ A + ++ +R++F +A+ ++ V NPC + R K E Sbjct: 101 HVAALKLHMADTPNMANRVISFLRMVFAYALERQIVDSNPCTGIRRHAEKKRDRYISDAE 160 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237 + S + +E +G R SD + + + + + QKTG + V + Sbjct: 161 FAAICAASSEYMS---VIWEMCFLTGQRISDVLNIKLSDISDVGIAFEQQKTGAKLIVAM 217 Query: 238 PDGFMKLLAMTPIGKET------FFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVR 290 LL F + + ++ + F+A AGV + H +R Sbjct: 218 SPDLKALLDRVHALPRKVRGATLFCARSGGKPVSYDTCKMGFRAACKAAGVKGATIHDLR 277 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324 S T + G G + Y + Sbjct: 278 AKSLTDTDRQGNN---AQMLGGHTDAKMTKRYLR 308 >gi|29375984|ref|NP_815138.1| phage integrase family site specific recombinase [Enterococcus faecalis V583] gi|29343446|gb|AAO81208.1| site-specific recombinase, phage integrase family [Enterococcus faecalis V583] Length = 408 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 50/398 (12%), Positives = 110/398 (27%), Gaps = 72/398 (18%) Query: 11 VTKERTRHGKIIYYFRKGHGR--------RIRLPYPHESTFIPAYMSALTGSTPKREYIN 62 + + ++G+ + + +GR +I + G E++ Sbjct: 4 IKSYKLKNGQERWEYFVSNGRSNGTGRQQKIHKRGFRSHKEALKAAKIIEGQIASEEFVK 63 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRS 121 + T+ ++ + ++ SRI + I G++ K + Sbjct: 64 -ENPQKMTISKFMNIWINEYK-NNVKEGSRIVYRDAIRMYIDPYIGNYQLNKYKPADHQK 121 Query: 122 GVESR-----------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP------ 164 + S + ++ ++ FK A + Y+ NP VE P Sbjct: 122 FINSLFTNKELGKSKNGLSYNTVKIVNAALSNAFKKAQKLGYIKSNPTYFVEFPLDKVKE 181 Query: 165 ---KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221 K K +E++ + + + F + GLR + + Sbjct: 182 KTNKEKKLEFYTLEQENLFLDTARNFDDFMWYVFFLIIFDLGLRKGEVMALRWFNFDFRD 241 Query: 222 FSIKTQKTGTIITVELPDGFMK----------------------------------LLAM 247 + K + + +L M Sbjct: 242 NILTFDKQRLYRKEQPGQVILDDVKTDAGKRSLKMTNRVRNSVLELYSINYDLTSNVLPM 301 Query: 248 TPIGKETFFINNDKQ----KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGA 302 T ++ FIN+ + + + KA + K H R +A AG Sbjct: 302 TNSNQDFLFINHRGKNVGLPIRQRSVDTAWHRIIQKANLPKIRIHDGRHTNAARLRQAGV 361 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 ++ G K V E Y + ++ + ++ Sbjct: 362 PLEDIKDMLGHKNVKTTEIYAHVSPEVK--ERAVNKLE 397 >gi|307828928|gb|ADN95150.1| integrase [Staphylococcus aureus] Length = 381 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 42/361 (11%), Positives = 104/361 (28%), Gaps = 52/361 (14%) Query: 27 KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS 86 G +R + L + ++N+ TT K + + + + Sbjct: 29 TGKQKRTTRRGFKTEREAKIAEAKLQTEVSQNGFLNNDI---TTFKEVYELWLEQYQ-NT 84 Query: 87 LAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142 + ++ ++ + D +KIT ++ + + S Sbjct: 85 VREST---YQRVLTLFDTAILEHFQDVPIKKITVQYCQKVINKWNKKYSDIKAIRIYTSN 141 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEG----IRPWTKEDMQQFKSFWSEGSQPRLAFEF 198 +FK+AV + + NP + P++K + ++ ++++QF +F + F Sbjct: 142 VFKYAVSLKIILDNPFAHTKAPRKKEAQQDASTKYYSSDELKQFLTFVEDDPLYYAIFRT 201 Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------------------------- 232 L ++G R + + +I KT Sbjct: 202 LAFTGFRRGELMALTWNDIDFTRQTISINKTCARGANYKLVIQEPKTKSSHRTISIDDKT 261 Query: 233 ---ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--- 286 + ++ L + + N + S Sbjct: 262 ASVLKSWRTHQRVESLKYGHSTSDKHQHVFTTVRDNKQLYPEHCNKALDLICEKNSFKRI 321 Query: 287 --HGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVV 343 HG R ++ +AG + E+ G + Y ++ R + + + + + Sbjct: 322 KVHGFRHTHCSLLFEAGLSIQEVQDRLGHGDIKTTMDIYAHVTEKQR--DQVADKFAKYI 379 Query: 344 D 344 + Sbjct: 380 N 380 >gi|82751630|ref|YP_417371.1| integrase [Staphylococcus aureus RF122] gi|82657161|emb|CAI81601.1| integrase [Staphylococcus aureus RF122] Length = 390 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 52/389 (13%), Positives = 106/389 (27%), Gaps = 60/389 (15%) Query: 14 ERTRHGKIIYY------FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67 R Y + G + I + + + EYI Sbjct: 4 YEKRGSTWRYRISLGKDVKTGKYKYISNSGFKRKSDAKHHAEMVERQLRTGEYIAPSTS- 62 Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR- 126 T + + E+ S + + V+S + E I + + + I + V Sbjct: 63 --TFQQVADEWL-SQYANEVKVSSVRAREKAIHHAIERFNNKPIQTINKHEYQRFVNDIS 119 Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-- 183 +++ + +TS ++FK+A + + I P ++RPK+KT E ++F Sbjct: 120 AQYSKNYVDSIITSTNMIFKYAYDMKLIRIMPSEDIKRPKKKTSVEELEDTEIHKKFLEK 179 Query: 184 ----------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF----------- 222 F L Y+G+R + + Sbjct: 180 DELFQFLEVAKNHHSPQNSFEVFCTLAYTGMRAGELLALKWSDIDFENNTINITKTYYNP 239 Query: 223 --------------------SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262 ++ D + F + + Sbjct: 240 NNNKKQFQILTPKTESSIGKIPVDPHVIKLLKNYKVDVQDTWKNGLYVDNNFVFTDVNGY 299 Query: 263 KMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 + + +W KA K + S H R + +AG E+ K ++ Sbjct: 300 PLVIKKLQLWIKAILKKTDITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTT 359 Query: 320 E-TYTKGADR-IRLGIKNSRRISSVVDSD 346 Y K + + + ++ V D Sbjct: 360 MNIYAKITNSYKKDASQKFSKLMENVSKD 388 >gi|75761152|ref|ZP_00741143.1| DNA integration/recombination/inversion protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228904570|ref|ZP_04068646.1| DNA integration/recombination/inversion protein [Bacillus thuringiensis IBL 4222] gi|74491351|gb|EAO54576.1| DNA integration/recombination/inversion protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228855051|gb|EEM99634.1| DNA integration/recombination/inversion protein [Bacillus thuringiensis IBL 4222] Length = 392 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 53/367 (14%), Positives = 113/367 (30%), Gaps = 56/367 (15%) Query: 27 KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS 86 G ++ ++ + + YIN P K + E+ S Sbjct: 27 TGKRKQKKVRGFKTKKEAQLAAARIEQEVANGTYINEP---DILFKDFVQEWLNIYS-KS 82 Query: 87 LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ---FLTSMRVL 143 ++S + ++++ + + IT K ++ + + T+ R++ Sbjct: 83 TKISSLRVRQKQSNKLVDFFANIKMKDITKKMYQTALNDLHDKGYAFNTLDGIHTAGRMI 142 Query: 144 FKWAVRQEYVAINPCLSVERPK---------RKTEGIRPWTKEDMQQFKSFWSEGS--QP 192 FK A+ + + NP +V+ P+ + I+ KE++ F E Sbjct: 143 FKKAIELQIIKSNPTDNVKLPRKVETVEDIENDKKAIKYLEKEELAHFLQVAKEKGLDND 202 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQN-------------------NIFSIKTQKTGTII 233 + F L YSGLR + + + + + G+I Sbjct: 203 YVFFSILAYSGLRAGELLALKWTDVDFENNTIKITKTLYNPDNNSQHYHLLTPKTKGSIR 262 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDK--------------QKMNATQFSIWFKAKATK 279 T+++ G MKLL + + K Sbjct: 263 TIKMDQGIMKLLKSHKAKQNELKLYTRPQYVDQGFVITKASGYPEVMKMIQNRLKRLIKL 322 Query: 280 AGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNS 336 + + K + H R ++ +AG E+ G ++ Y + K S Sbjct: 323 SNITKNITPHSFRHTHTSLLIEAGVGIKEIQQRLGHTDIETTMNIYAHMT--KNMEEKAS 380 Query: 337 RRISSVV 343 ++ S ++ Sbjct: 381 QKFSELM 387 >gi|328947971|ref|YP_004365308.1| integrase family protein [Treponema succinifaciens DSM 2489] gi|328448295|gb|AEB14011.1| integrase family protein [Treponema succinifaciens DSM 2489] Length = 332 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 33/281 (11%), Positives = 83/281 (29%), Gaps = 15/281 (5%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH----T 129 L+ + + H + S ++S + I + +I T+ +R + + + Sbjct: 55 LLENFLAAKHVEGCSERSIKYYKSTLQKAITIL-HKPFNQIETEDLRKYLSDYQKINNAS 113 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + + F W + Y+ +P + + K ++ E + + Sbjct: 114 RMTIDNVRRILSTFFTWLEDENYILKSPVRRIHKIKTAKLIKETYSDETLVL-LRDNCKT 172 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT 248 ++ + L +G+R S+ Q + V L Sbjct: 173 TRDLAIIDMLASTGMRVSELVTLNKQDVDFVNRECVVFGKGSKERPVYFDARTKIHLLNY 232 Query: 249 PIGKETFFIN------NDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAG 301 ++ ++ + I + + H R+ AT + D G Sbjct: 233 LNERKDNNPALFVSLLEPHNRLQISGVEITLRKLGRSLNIQKVHPHKFRRTLATQAIDKG 292 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342 ++ G + +D Y D+ + + + + V Sbjct: 293 MPIEQVQRLLGHQKIDTTMEYA-MVDQQNVKVSHKNTLVKV 332 >gi|325678329|ref|ZP_08157952.1| site-specific recombinase, phage integrase family [Ruminococcus albus 8] gi|324109971|gb|EGC04164.1| site-specific recombinase, phage integrase family [Ruminococcus albus 8] Length = 398 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 43/357 (12%), Positives = 100/357 (28%), Gaps = 51/357 (14%) Query: 20 KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGST-----PKREYINSPRKKPTTLKWL 74 ++ + + ++ + + + + I + + Sbjct: 14 RVSCGYDIRGKQIVKYRTFRPPEGMSEKQAQKEANRQAVLFEEECKIGHCQTGSIKFEAF 73 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH------ 128 ++ K L + ++ G KI+ + I+ + Sbjct: 74 AEQWFKEYAKLELRPTTYERMRKLTARVYPAIGHLKLDKISRRDIKLFINDLALNGRNFK 133 Query: 129 -----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + + I ++ + +F +A+ + + NPC ++ P E R + Sbjct: 134 TGEPLSRKTIIHHVSFISDVFSYAIDMDMLTYNPCEKMKIPHIGEEKEREIYSPEEFDQL 193 Query: 184 SF--WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----------------IFSI 224 + R+ F +++G R + + + ++ Sbjct: 194 FELLQQAPLKYRVFFTLAVFTGFRRGELLGLEWKDILWEENVISVRRTSAYTGAEGQYTG 253 Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETF--------------FINNDKQKMNATQFS 270 KT+ + PD +LL + ++ F D + MN Sbjct: 254 KTKTKRSQRCNRYPDELFELLKEYKVWQDEERERQGEKWVDTDRLFTKWDGRPMNPQTPY 313 Query: 271 IWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKG 325 W+K K + H +R A+I AG + A G + YT Sbjct: 314 GWYKEFCQKHDFRFCNIHSMRHSHASILIAAGVDVATVSADLGHSNCNTTLGIYTHE 370 >gi|273810420|ref|YP_003344891.1| integrase [Xylella phage Xfas53] gi|257097795|gb|ACV41101.1| integrase [Xylella phage Xfas53] Length = 339 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 54/329 (16%), Positives = 99/329 (30%), Gaps = 23/329 (6%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 P + G + YY+ G R P + + L + Sbjct: 12 PRFRVRPQKSGVVYYYYDHGGKPRKETPLGRDYGLAIKRWAELEHAQITPAI-------A 64 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR 126 T + + YR A N++ +++ D + I +IR ++ R Sbjct: 65 VTFRHVAERYRAEVIPTK-AYNTQRVEHRCLAPLLKFFDDPPAPFEAIKPVNIRQYLDWR 123 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 A + ++ L+ W + + +R R ED + Sbjct: 124 TSK-VIANREVSVFSHLWNW--ARSKGITDLPNPCGGIRRNKATGRNVYIEDTTYHAVYQ 180 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246 + R A + +G R SD +H+ N I KTG + + + L+ Sbjct: 181 AADQTLRDAMDLAYLTGQRVSDVVSMDERHIVNGALEICQAKTGAKLAITVTGELAVLIK 240 Query: 247 MTPIGKETFFINNDKQKM-------NATQFSIWFKAKATKAGVNK---SAHGVRKFSATI 296 K + + + + + T F AG+ K +R +AT Sbjct: 241 RIFDRKRGMKLRSTRLIVDAEGLELSRTGLRYRFDKARAAAGIAKEVFQFRDLRAKAATD 300 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKG 325 AD + A G +V E Y + Sbjct: 301 KADLAGDIRQAQAQLGHASVTMTEHYVRK 329 >gi|239905519|ref|YP_002952258.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1] gi|239795383|dbj|BAH74372.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1] Length = 362 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 43/345 (12%), Positives = 103/345 (29%), Gaps = 14/345 (4%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYM----SALTGSTPKREYINSPRKKPT 69 +R + +R GR+ + + + Sbjct: 5 KRANNDTYYVSYRDAGGRQRTKTFGKGREGKRDAQKFDEEIKARKLVEAPLPIFAPGEKV 64 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK- 127 + L Y + ++ I +I + I + Sbjct: 65 YIDQLTQLYINAKKAEGKSLRWIKELAVLVKTHFIPAFAQRPVDEIRFEEIVEIIGKVYA 124 Query: 128 -HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQFKSF 185 + ++ ++L+ ++++F++ V E NP ++PK + + +T + + Sbjct: 125 DRSQTTRSRYLSYLKMVFQYGVDYELTTKNPLKRWKKPKERPRDTKLTYTDLMKIKELAR 184 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 +A+ + +G + ++ + KT T + + F+ L Sbjct: 185 PHLAWAIEVAWNLGVRTGESELLALTWNDIDWDDSSIKVYATKTKTTRVIPIAPEFLDRL 244 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303 + +T +I + K F K A KAG+ + +R AT G Sbjct: 245 QLMREKAQTGYIIEYQGKPLRK-FRRSLKTAAEKAGLTYPVVMYDIRHLFATTLLREGGD 303 Query: 304 AHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVDSDD 347 + G +V + Y + + ++ S+ +D Sbjct: 304 VAAVSKLMGHASVKMTVDQYYHLLGGEKR--RTIAKLPSLSKPED 346 >gi|255283631|ref|ZP_05348186.1| phage integrase [Bryantella formatexigens DSM 14469] gi|255265893|gb|EET59098.1| phage integrase [Bryantella formatexigens DSM 14469] Length = 361 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 56/339 (16%), Positives = 98/339 (28%), Gaps = 41/339 (12%) Query: 18 HGKII----YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 G YY G R + + + T Sbjct: 9 RGTWYVSFHYYDWTGKNCRKVKRGFKTKREATEW--------ERHFRMKEAADLDMTFDE 60 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVES------- 125 + Y + L N+ ++ E +++ D R I K I Sbjct: 61 FVQAYTRDMKPK-LKQNTWLTKEHILRTKLLPYFKDKKMRDIRPKDIIQWQNEQISYRDE 119 Query: 126 --RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDMQQF 182 + + P+ + + LF AVR + NP + + E + WTKED +F Sbjct: 120 KGKPYAPTYLKTLQSELSALFNHAVRFYELNSNPVVKAGPLGKGKAEEMLFWTKEDYLKF 179 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------- 232 + AF+ L + GLR + Q + + I+ K+ Sbjct: 180 IEAVKDKPYSYHAFQILYWCGLRVGELLALTPQDIDFDNKVIRITKSYQWLEGKDVITDP 239 Query: 233 ------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-S 285 V +PD + L + + + A KAGV + Sbjct: 240 KTPKSKRNVSMPDFLCEELKDYIGRLYGILPTDCIFHLTKSFLHHEMTRGAEKAGVKRIR 299 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R ++ G +A + G ++VD Y Sbjct: 300 IHDLRHSHVSLLISMGFSAVSIGNRVGHESVDITYRYAH 338 >gi|160944688|ref|ZP_02091915.1| hypothetical protein FAEPRAM212_02202 [Faecalibacterium prausnitzii M21/2] gi|158443872|gb|EDP20876.1| hypothetical protein FAEPRAM212_02202 [Faecalibacterium prausnitzii M21/2] Length = 416 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 53/414 (12%), Positives = 108/414 (26%), Gaps = 101/414 (24%) Query: 5 LRLPPFVTKERTRHGKII------------YYFRK--GHGRRIRLPYPHESTFIPAYMSA 50 ++ ++ + + G+++ Y +R +G+R + Y + Sbjct: 1 MKRRVYMQRRKDNKGRVLKDGEVYRKSDGLYMYRWTAKNGKRHTI-----------YDAT 49 Query: 51 LTGSTPKREYINSPRKK-------PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI- 102 L G K E I TL L +RK+ L ++ ++ +++ Sbjct: 50 LEGLREKEEKIQHDLADGIRIPECSLTLNDLFELWRKNKV--GLKEHTFANYVYMYNRFV 107 Query: 103 IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL----TSMRVLFKWAVRQEYVAINPC 158 + G + I IRS A+ L + +F AV EY+ +NP Sbjct: 108 RDEIGMMKLKDIRKSDIRSYYNGIVRNGKMALNTLETIQNVLHQVFAVAVDDEYIRVNPT 167 Query: 159 LS-----VERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRLAFEFLLYSGLRCSDSC 210 + +T T Q F +F + F F+L +G R S++ Sbjct: 168 DGVLTAIKAAHQYETPKRHALTLPQQQAFLNFIKKTPKFQHWLPMFTFMLGTGCRISETV 227 Query: 211 RAGVQHLQ---------------------NNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249 + + + + K L Sbjct: 228 GLCWSDIDFESGFITIQHNLVYHDHEVGGCYFTMSTPKTAAGKRAIPILPEVRKALEQER 287 Query: 250 IGKETFFINNDK---------------QKMNATQFSIWFKAKATKAG------------- 281 ++ + + Q N + K + Sbjct: 288 TNQQELELVCEYEIDGISDFVFLNRFGQPQNPQTVNRAIKRISVAHNEAELEKAEKEKRE 347 Query: 282 ----VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330 S H +R T + + G + + Y + + Sbjct: 348 PQLLPPFSCHNLRHTFCTRLCENETNLKIIQDIMGHRDISTTMEIYAEATKEAK 401 >gi|37524549|ref|NP_927893.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens subsp. laumondii TTO1] gi|37525103|ref|NP_928447.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens subsp. laumondii TTO1] gi|37525111|ref|NP_928455.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens subsp. laumondii TTO1] gi|36783973|emb|CAE12838.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784529|emb|CAE13429.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784537|emb|CAE13437.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 376 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 48/317 (15%), Positives = 93/317 (29%), Gaps = 32/317 (10%) Query: 51 LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110 L P P +L L+ + + + + + I + D Sbjct: 11 LLTVDDVYRQPVGPAHDPKSLYALLLRFVAWRQERNWSETTLKVQTHHTYHFILWATDRG 70 Query: 111 Y---RKITTKHIRSGVESRKH---------TPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158 IT + + + L ++V FKW +Q + NP Sbjct: 71 LYYAADITRPILERYQRYLYQYRKTNGEPLSIRTQRTQLQPLQVWFKWLTKQNLILANPA 130 Query: 159 LSVERPKRKTEGIRPWTKEDMQQFK-----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213 +E P+ + R D + +G++ R E L +G+R S++ R Sbjct: 131 ADIELPREEKRLPRYILSIDEIEHILSLPDPNTLQGARDRALMELLWSTGIRRSEAARLD 190 Query: 214 VQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM------- 264 + + +I+ K + L + + L + + Sbjct: 191 IYSIDGSRKTVTIRQGKGNKDRVLPLGERALNWLQFYQQQIRPQLLVTPDIQSLFVAMDG 250 Query: 265 ----NATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 + AG+ K H R AT + GA + A G +V+ Sbjct: 251 LDGLQPNGITNAVSGYIRAAGIEKKGACHLFRHAMATQMLENGADLRWIQAMLGHASVES 310 Query: 319 AETYTKGADRIRLGIKN 335 + YT+ + R + Sbjct: 311 TQVYTQVSIRALQAVHA 327 >gi|170680409|ref|YP_001746252.1| phage integrase family site specific recombinase [Escherichia coli SMS-3-5] gi|213417372|ref|ZP_03350514.1| site-specific recombinase, phage integrase family protein [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|170518127|gb|ACB16305.1| site-specific recombinase, phage integrase family [Escherichia coli SMS-3-5] Length = 326 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 43/309 (13%), Positives = 93/309 (30%), Gaps = 27/309 (8%) Query: 26 RKGHGRRIRLPYPHESTF--IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83 R G+RIR + ++ Y A R TL L++ + K H Sbjct: 18 RGRDGKRIRRKFERKAEAVAFERYTIAYASQKE----WAGQRADRRTLSELLNIWWK-YH 72 Query: 84 WGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR---KHTPSSAIQFL 137 + ++ F+ +++ GD +++ + + R + ++ + + Sbjct: 73 GQNHEHGTKE-----FNHLLKTISGIGDIPVSRMSKRALMDYRSMRLRDGISAATINRDM 127 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197 + +F ++ + + + P E + K L Sbjct: 128 YRLSGMFTKLIQLDEFSGQHPI-HGLPPLAEANPEMTFLEKAEIEKLLNVLDGDDLLVAL 186 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI 257 L +G R ++ + N + K G TV ++ K Sbjct: 187 LCLSTGGRWTEVATLKPAQITNCRVTFLKTKNGKKRTVP--------ISEELEKKVKEEA 238 Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317 + K++ +F + N++ H +R A+ G L G ++ Sbjct: 239 SAKLFKVDYEKFCGILRRVKPDIPPNQATHILRHTFASHFMMNGGNIIALQQILGHASIQ 298 Query: 318 QAETYTKGA 326 Q Y A Sbjct: 299 QTMAYAHLA 307 >gi|167717571|ref|ZP_02400807.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei DM98] Length = 244 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 34/231 (14%), Positives = 70/231 (30%), Gaps = 27/231 (11%) Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + S L++ R ++W + + NP +V PKR + + +D + Sbjct: 1 MSARSISHRLSAWRAFYRWFSQHVEMNANPVAAVRAPKRAKTLPKALSVDDTAALMDAPT 60 Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------GT 231 G+ + E SGLR ++ ++++++ + Sbjct: 61 AGTAESLRDHAILELFYSSGLRLAELIGLDIEYVKDGAYRSAGWLDLAEAEVTVRGKGDK 120 Query: 232 IITVELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 V + + L F++ +M+ K A AG+ Sbjct: 121 ERKVPVGRKALDALHAWLAVRGEFVKHDPRPLFLSVRGNRMSPGVVRERVKRAALAAGIP 180 Query: 284 --KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R AT + + G ++ + YT D L Sbjct: 181 ANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYT-SLDFQHLA 230 >gi|150010096|ref|YP_001304839.1| site-specific recombinase [Parabacteroides distasonis ATCC 8503] gi|149938520|gb|ABR45217.1| site-specific recombinase [Parabacteroides distasonis ATCC 8503] Length = 382 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 58/362 (16%), Positives = 107/362 (29%), Gaps = 34/362 (9%) Query: 11 VTKERTRHGKIIYYF-----------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE 59 + + GK Y F RI L + + Sbjct: 28 IYLDIYYKGKRYYEFLKLYLTPERFPEDRDKNRITLRLANSIKA----QRIIDLQNEIYG 83 Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119 TL +SE S S + + + I T + Sbjct: 84 VRMINGLGKKTLLEFLSELSTDKSAHGDKAYSLR-LRSLANHLRDYMPQCLLKDIDTGFV 142 Query: 120 RSGVESRKHTPS-----SAIQFLTSMRVLFKWAVRQEYVAINPC---LSVERPKRKTEGI 171 + + + P + + + V AV++ + NPC + E+P + T Sbjct: 143 KGFIAHLRKQPYLKSDFTIHGYYRLLNVTLNKAVKKGLILSNPCGSLDTDEKPHKPTSLR 202 Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 T E++++ + + AF F + GLR SD + +Q + Sbjct: 203 TYLTLEELKRLIRTDCVCPEVKKAFLFCCFCGLRISDLTALRWEDMQKEGNDKFRLQIIQ 262 Query: 232 I-----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--- 283 I + L + +K L + + + T K AG+ Sbjct: 263 RKTKEAIYLPLSEEAIKYLPARENENDNDRLGLIFHLPSLTIICQVLKGWTLAAGIKNKK 322 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343 + H R AT+S G + + G K + + Y K D + + R + V+ Sbjct: 323 VTFHVSRHTFATLSLALGIDLYTVCKLLGHKNIISTQVYAKIIDASKR--QAIDRFNGVL 380 Query: 344 DS 345 D+ Sbjct: 381 DA 382 >gi|317052534|ref|YP_004113650.1| integrase family protein [Desulfurispirillum indicum S5] gi|316947618|gb|ADU67094.1| integrase family protein [Desulfurispirillum indicum S5] Length = 303 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 38/275 (13%), Positives = 82/275 (29%), Gaps = 23/275 (8%) Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 + + L ++ K G L + ++ +I D + +++ + Sbjct: 7 QDPSFNKLYQKHLKCLKLGGLQPKTIDAYARALRRIGHYF-DGNVCDLSSDQLLDYFTEL 65 Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 H+ S+ L ++ + +R+ + I + I + Sbjct: 66 LDTHSWSAVKLDLYGLKFFYSEVLRKPWENILLIKPPK-----ASRIPDILSVEQAGRLF 120 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFM 242 + ++ F GLR + R V + N I+ K V LPD + Sbjct: 121 AATSTLSYKVFFFTCYSMGLRLGEGIRLTVDDIDTGNMRVHIRDAKGNKDRLVPLPDKTL 180 Query: 243 KLLAMTPIGKETFFI------------NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGV 289 ++L + ++ ++ G+ + S + + Sbjct: 181 QVLREFWAVHRHPCFLFPSRKRGLKNAHLVDLPLDRGGIQSAMQSVVRHLGLRRISCYSL 240 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT +AG EL G ++ YT Sbjct: 241 RHSYATHMLEAGVDLLELQQILGHVSILTTARYTH 275 >gi|90580685|ref|ZP_01236489.1| Tn554, transposase A [Vibrio angustum S14] gi|90438142|gb|EAS63329.1| Tn554, transposase A [Vibrio angustum S14] Length = 359 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 32/323 (9%), Positives = 79/323 (24%), Gaps = 68/323 (21%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESR-------- 126 E+ K + N+ ++ + + D + I + + + + Sbjct: 30 EFTKFLEATDKSPNTIKAYSHHLKLYWQFLTQDDISWTDICIEDLANFIRWLQSGDQDGV 89 Query: 127 --------KHTPSSAIQFLTSMRVLFKWAVR-----QEYVAINPCLSVERPKR------- 166 K T + + ++ + + R + + S + Sbjct: 90 ISIVKRDAKRTNKTINLIMAAVSAFYDYHSRSGKVADLKIYRDGAFSGKYKSFLHHITSG 149 Query: 167 ------------KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214 G++ TK +QQ + + + + +G+R Sbjct: 150 KSIQSRVLKLKEPKRGLKTLTKPQVQQVIEACN-NLRDKFIICLMYETGMRIGQVLGLRH 208 Query: 215 QHL--------QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF----------- 255 + + + + L D ++++ Sbjct: 209 EDIKSGDNQIAIRFRSNNENNARSKSREDNLVDVSSSIVSLYTDYFIHEYGEVESDYVFV 268 Query: 256 --FINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGW 313 + M FK + K G++ + H R AT AG + G Sbjct: 269 NLWDGEIGAPMKYGSVITLFKRISKKTGIDVTPHIFRHTHATELLRAGWDLAYIQKRLGH 328 Query: 314 KTVDQAE-TYTKGAD---RIRLG 332 + Y + + L Sbjct: 329 SDIQTTANIYAHLSSDDMKKELA 351 >gi|326692848|ref|ZP_08229853.1| prophage Lp2 protein 2, integrase [Leuconostoc argentinum KCTC 3773] Length = 355 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 36/324 (11%), Positives = 91/324 (28%), Gaps = 24/324 (7%) Query: 29 HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA 88 RIR +T A + ++ K ++ L Sbjct: 20 GKTRIRKTMSGFTTKRDA--TIWANDIEFKKQNEDLVVKDHLFTEAFEDWYHVFKEPQLE 77 Query: 89 VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP--SSAIQFLTSMRVLFKW 146 ++ ++ + K ++T+K + + SS ++ Sbjct: 78 TATKQWYKRTLSLLKEKWDGKKLSELTSKDFQKLINDYGSDHVLSSVSHIKNITSAFIRY 137 Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS---- 202 AV ++++ + +V+ + + ++ ++ A ++ + Sbjct: 138 AVDEDFIKKDFTRNVKTYSVVKSKDKQLKFLEAEEMENLILSIKDNEAATSRMILTAIYS 197 Query: 203 GLRCS--------------DSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248 G+R S + ++ T+ + + +P FM + Sbjct: 198 GMRFSEVAGLTLEDFDFEKNVINVNKSWQIHDQKFKNTKTQTSNRIIVMPKVFMDIAKKW 257 Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHEL 307 G E F +++ + + K + HG+R A+ + Sbjct: 258 TFGNEFAFESDNGTPPTDNAANKQLRRYLEKINSKIITFHGLRHTHASYLLANDLAIQFV 317 Query: 308 MATYGWKTVD-QAETYTKGADRIR 330 G V+ TY ++ R Sbjct: 318 SERLGHADVNITLSTYAHLLNKKR 341 >gi|315575528|gb|EFU87719.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0309B] gi|315580031|gb|EFU92222.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0309A] Length = 408 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 50/398 (12%), Positives = 110/398 (27%), Gaps = 72/398 (18%) Query: 11 VTKERTRHGKIIYYFRKGHGR--------RIRLPYPHESTFIPAYMSALTGSTPKREYIN 62 + + ++G+ + + +GR +I + G E++ Sbjct: 4 IKSYKLKNGQDRWEYFVSNGRSNGTGRQQKIHKRGFRSHKEALKAAKIIEGQIASEEFVK 63 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRS 121 + T+ ++ + ++ SRI + I G++ K + Sbjct: 64 -ENPQKMTISKFMNIWINEYK-NNVKEGSRIVYRDAIRMYIDPYIGNYQLNKYKPADHQK 121 Query: 122 GVESR-----------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP------ 164 + S + ++ ++ FK A + Y+ NP VE P Sbjct: 122 FINSLFTNKELGKSKNGLSYNTVKIVNAALSNAFKKAQKLGYIKSNPTYFVEFPLDKVKE 181 Query: 165 ---KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221 K K +E++ + + + F + GLR + + Sbjct: 182 KTNKEKKLEFYTLEQENLFLDTARNFDDFMWYVFFLIIFDLGLRKGEVMALRWFNFDFRD 241 Query: 222 FSIKTQKTGTIITVELPDGFMK----------------------------------LLAM 247 + K + + +L M Sbjct: 242 NILTFDKQRLYRKEQPGQVILDDVKTDAGKRSLKMTNRVRNSVLELYSINYDLTSNVLPM 301 Query: 248 TPIGKETFFINNDKQ----KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGA 302 T ++ FIN+ + + + KA + K H R +A AG Sbjct: 302 TNSNQDFLFINHRGKNVGLPIRQRSVDTAWHRIIQKANLPKIRIHDGRHTNAARLRQAGV 361 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 ++ G K V E Y + ++ + ++ Sbjct: 362 PLEDIKDMLGHKNVKTTEIYAHVSPEVK--ERAVNKLE 397 >gi|227539179|ref|ZP_03969228.1| integrase/recombinase [Sphingobacterium spiritivorum ATCC 33300] gi|227240861|gb|EEI90876.1| integrase/recombinase [Sphingobacterium spiritivorum ATCC 33300] Length = 357 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 39/264 (14%), Positives = 83/264 (31%), Gaps = 16/264 (6%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT----TKHIRSGVESRKHTP 130 ++ + + N+ ++ F Q++ D + +I + + K + Sbjct: 85 FQRMKEVLQMKAYSPNTIKTYMVEFAQLLYVVKDVPVDSLGYDRLRAYILYCINTLKISE 144 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 S L +++ F Q + + RPKR++ + +++++++ Sbjct: 145 SQLHSRLNAIKFYF----EQVLHKPDFFAEIPRPKRRSTLPKVLSQKEVKR-IFNTVRNR 199 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPDGFMKLLAMT 248 + L + GLR S+ V + + + + K V LP + LL Sbjct: 200 KHLLMLQLCYGMGLRVSEVVNLKVSDIDSGRMQVLIEAGKGKKDRYVPLPTAVLDLLREY 259 Query: 249 PIGKETFFI---NNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303 + + FK A V HG+R AT + G Sbjct: 260 YKAYRPKTYLFEGQYGGRYSVRSVQAVFKNAMKAAKVNRPIGIHGLRHSYATHLLEYGTD 319 Query: 304 AHELMATYGWKTVDQAETYTKGAD 327 + G + Y K + Sbjct: 320 ISFIQQLLGHNDIKTTMLYAKVGN 343 >gi|194333360|ref|YP_002015220.1| integrase family protein [Prosthecochloris aestuarii DSM 271] gi|194311178|gb|ACF45573.1| integrase family protein [Prosthecochloris aestuarii DSM 271] Length = 335 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 35/289 (12%), Positives = 82/289 (28%), Gaps = 48/289 (16%) Query: 85 GSLAVNSRISFESYFDQIIRKS---------GDFDYRKITTKHIRSGVESRKHT---PSS 132 + ++R ++ + Q D I+ +R + P S Sbjct: 31 RHFSRHTREAYRTDICQFYTFIRYQHTLADKDPIDPASISVLDVRLFMGELLEKGLQPKS 90 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF------- 185 + L +++ + + + V ++ V P+ ++ + ++ Sbjct: 91 IARKLAAVKSFYNYLLETGAVKVSVPSQVITPRFSKPVPGFLSERETEKLFDELLSLPAP 150 Query: 186 ------------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TI 232 ++ R E L GLR S+ +++ ++ G Sbjct: 151 GEALGAVRAGDGGFTYARDRALLEVLYGCGLRISEVIGLQYENVNLQDSLLRVSGKGGKQ 210 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDK--------------QKMNATQFSIWFKAKAT 278 V L L + FF ++ +++ + + Sbjct: 211 RIVPLGGPARTALRNYFEVRRNFFRMKNEESPDASYVFVTKKGRRIYPVLVQRVTRKYLS 270 Query: 279 KA-GVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 + K+ H +R AT ++GA + G + E YT Sbjct: 271 AVTEIKYKNPHVLRHSFATHMLNSGADLKSVSEMLGHTNLTTTEIYTHV 319 >gi|121605183|ref|YP_982512.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2] gi|120594152|gb|ABM37591.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2] Length = 331 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 38/337 (11%), Positives = 92/337 (27%), Gaps = 28/337 (8%) Query: 16 TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75 G+ G R R+ + + A + + ++ ++ Sbjct: 6 DAKGRKHIGLMVGGERIHRILPQGATAGDAKRLEAELRGALIKAPRSVNIPGDPSMSSML 65 Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE---------SR 126 Y + A + + K R+ I+ Sbjct: 66 GIYLEHAKGLR-SATTSAHHALRLGPWAEKYKASQAREFAAHVIKDMGALQKGPDGKLKP 124 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + P++ + L + + A + N L ++ + + + ++Q Sbjct: 125 AYAPATINRSLATAKKGLALAWESNLIPENYGLRIKSLSVNNKREVFLSVDQVRQITQHC 184 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKL 244 +E Q + A L +G R + + +H++ N + KT + + Sbjct: 185 TE--QAQAAIWAALLTGARRGEIFQIRAEHIKENEIIVPASHTKTLRSRVIPIIPALRPW 242 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGAT 303 L P+ ++ KA + + H +R A+I G Sbjct: 243 LVHFPLTM------------TIDGVKSSWRRARVKADMEHVNFHDLRHSCASILIALGVD 290 Query: 304 AHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRI 339 + + G + Y ++ R + + Sbjct: 291 LYTVSKILGHSNTQTTQRYAHLQVEQQREALNKLGML 327 >gi|290958002|ref|YP_003489184.1| integrase [Streptomyces scabiei 87.22] gi|260647528|emb|CBG70633.1| putative integrase [Streptomyces scabiei 87.22] Length = 405 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 36/342 (10%), Positives = 101/342 (29%), Gaps = 64/342 (18%) Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVES 125 +T+ + + + L N+ + + + G ++TT+ +R+ ++ Sbjct: 54 ADSTVSAYLVYWLEGVAVHHLRENTHTRYAASIRLHLNPGLGAKKLARLTTRDVRTFLDG 113 Query: 126 RKH---------------------------TPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158 + +P + ++ + AV ++ + N Sbjct: 114 LRTTCQCCAQGRDTDRRSCCAIGQCCEKRLSPLTVTYVHAVLKSALEHAVHEDELPRNVA 173 Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218 +++ + +P T + +Q + G + +E L +GLR + + + Sbjct: 174 RNIKTTAPRPRRFQPLTATEARQLLQAAN-GDRLHALYELALRTGLRKGELLGLHWEDVD 232 Query: 219 NNIFSIKTQKTGTI-------------------------------ITVELPDGFMKLLAM 247 + + ++ I E + Sbjct: 233 LDGGTATIHRSLQRTRSQGLTVLNTKTLASERRIALPTECLSSLKIHQEQQQEERQAAGT 292 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHE 306 F + ++ T + F+ +G+ H +R +AT+ + G Sbjct: 293 NWADNGLVFTTPKGKPLDPTNLTRRFRRLLHSSGLRTIRFHDLRHSTATLLLEQGIDLVV 352 Query: 307 LMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVVDSDD 347 + G + Y R+RL + ++ ++ + + Sbjct: 353 IKELLGHAHIGVTAGVYAHV--RLRLQRQAINTLNDLLGTGN 392 >gi|237719265|ref|ZP_04549746.1| integrase [Bacteroides sp. 2_2_4] gi|229451644|gb|EEO57435.1| integrase [Bacteroides sp. 2_2_4] Length = 420 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 43/302 (14%), Positives = 93/302 (30%), Gaps = 26/302 (8%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGV 123 T+ L Y + +L ++ + + ++ D+D I + Sbjct: 110 TISTLFD-YHEIMEKKNLRASTFVGYHVTKKHLLNFIRIKYHVSDYDLTAIDKAFVYEFY 168 Query: 124 ESRK---------HTPSSAIQFLTSMRVLFKWAVRQEYVAINP-CLSVERPKRKTEGIRP 173 + + A++ + + + A++ E+++ NP CL + + G Sbjct: 169 AYLQGYKREGETVCAVNGALKHIQRFKKVMNVALQNEWISRNPVCLLNAKKTKVERGFLS 228 Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233 + + S R F F +Y+GL D +++ I Sbjct: 229 EKELKSIEEVPLPVNLSIVRDVFVFAVYTGLSFVDISNLTNENINVGIDKSLWLNYYRQK 288 Query: 234 TVELPD-----GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286 T + +L + N+ + + K A +AGV K + Sbjct: 289 TDIHAMLPLLQPAVCILKRYEAYHKGKRTNHVFPVPPNQVANRYLKKVAKEAGVEKNITF 348 Query: 287 HGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIRL-GIKNSRRISSVVD 344 H R AT G + G ++ + Y K D + + + + + + Sbjct: 349 HMARHTFATTITLSHGIPIETVSKMLGHTSIKTTQIYAKILDTKVMDDMAALKELYTRKE 408 Query: 345 SD 346 S Sbjct: 409 SQ 410 >gi|27383511|ref|NP_775042.1| class I integron integrase [Citrobacter freundii] gi|32455549|ref|NP_862305.1| DNA integrase IntI1 [Corynebacterium glutamicum] gi|133756208|ref|YP_001096358.1| hypothetical protein pLEW517_p33 [Escherichia coli] gi|169797581|ref|YP_001715374.1| integrase/recombinase (E2 protein) [Acinetobacter baumannii AYE] gi|200388793|ref|ZP_03215405.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|226807703|ref|YP_002791398.1| IntI1 [Enterobacter cloacae] gi|226810014|ref|YP_002791708.1| IntI1 [Enterobacter cloacae] gi|297622202|ref|YP_003675754.1| IntIA [Klebsiella oxytoca KOX105] gi|301028321|ref|ZP_07191578.1| integron integrase [Escherichia coli MS 196-1] gi|317050213|ref|YP_004111329.1| integron integrase [Desulfurispirillum indicum S5] gi|5107035|gb|AAD39931.1|AF133699_1 integron In50 integrase [Pseudomonas aeruginosa] gi|9836716|gb|AAG00280.1|AF164956_12 DNA integrase IntI1 [Corynebacterium glutamicum] gi|10185692|gb|AAG14404.1|AF188331_3 putative integrase [Shigella flexneri] gi|12719023|gb|AAK02045.1|AF261825_14 integrase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|2385351|emb|CAA75043.1| int [Corynebacterium glutamicum] gi|3661459|gb|AAC64362.1| class I integrase [Pseudomonas aeruginosa] gi|4063851|gb|AAC98492.1| integrase [Salmonella typhimurium DT104] gi|5420398|emb|CAB46685.1| DNA integrase [Pseudomonas aeruginosa] gi|17383996|emb|CAC81318.1| IntI1 DNA integrase [Salmonella typhimurium] gi|17384003|emb|CAC81325.1| IntI1 DNA integrase [Salmonella typhimurium] gi|27261364|gb|AAN87705.1| class I integron integrase [Citrobacter freundii] gi|34556054|emb|CAE46709.1| DNA integrase [Pseudomonas aeruginosa] gi|34556062|emb|CAE46716.1| DNA integrase [Pseudomonas aeruginosa] gi|57208125|emb|CAI40605.1| class 1 integrase [Corynebacterium amycolatum] gi|66277417|gb|AAY44597.1| class 1 integron integrase [Enterobacter cloacae] gi|82653445|emb|CAG23925.2| type I integrase [Pseudomonas aeruginosa] gi|83627316|dbj|BAE54317.1| integrase [Escherichia coli] gi|85376217|gb|ABC70304.1| IntI1 [Pseudomonas aeruginosa] gi|85376219|gb|ABC70305.1| IntI1 [Pseudomonas aeruginosa] gi|90265346|emb|CAJ77028.1| Integrase [Acinetobacter baumannii] gi|110084043|gb|ABG49197.1| hypothetical protein [Escherichia coli] gi|118402688|emb|CAI94346.1| type I integrase [Pseudomonas aeruginosa] gi|118402758|emb|CAI43354.1| integrase/recombinase [Pseudomonas aeruginosa] gi|122891987|gb|ABM67075.1| IntI1 integrase [Aeromonas caviae] gi|148455793|gb|ABQ65133.1| IntI1 [Pseudomonas putida] gi|151564272|gb|ABS17587.1| integrase [Klebsiella pneumoniae] gi|166865480|gb|ABZ01842.1| IntI1 [Salmonella enterica subsp. enterica] gi|169150508|emb|CAM88414.1| Integrase/recombinase (E2 protein) [Acinetobacter baumannii AYE] gi|187369485|dbj|BAG31351.1| class 1 integrase IntI1 [Salmonella enterica subsp. enterica serovar Typhimurium] gi|193783422|emb|CAE81269.2| IntI1 [Klebsiella pneumoniae] gi|199605891|gb|EDZ04436.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|226425929|gb|ACO54022.1| IntI1 [Enterobacter cloacae] gi|226426240|gb|ACO54332.1| IntI1 [Enterobacter cloacae] gi|253558898|gb|ACT32121.1| IntI1 [Pseudomonas putida] gi|255039694|gb|ACT99624.1| IntI1 [Pseudomonas aeruginosa] gi|265509433|gb|ACY75520.1| integrase [Pseudomonas aeruginosa] gi|265509448|gb|ACY75535.1| integrase [Pseudomonas aeruginosa] gi|296492021|gb|ADH29523.1| IntI1 [Klebsiella oxytoca KOX105] gi|297593574|gb|ADI47529.1| IntI1 integrase [Klebsiella pneumoniae] gi|298104544|gb|ADI55012.1| class I integron integrase [Aeromonas caviae] gi|299878615|gb|EFI86826.1| integron integrase [Escherichia coli MS 196-1] gi|312914891|dbj|BAJ38865.1| IntI1 [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|312915760|dbj|BAJ39733.1| IntI1 [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|316945297|gb|ADU64773.1| integron integrase [Desulfurispirillum indicum S5] gi|321159227|gb|ADW66520.1| DNA integrase [Enterobacter aerogenes] gi|321268198|gb|ADW78905.1| IntI [Escherichia coli] gi|332144420|dbj|BAK19640.1| class 1 integrase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|332144565|dbj|BAK19780.1| class 1 integrase [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 337 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 35/303 (11%), Positives = 84/303 (27%), Gaps = 52/303 (17%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132 ++ + R+ + ++ + ++ + IR G + + + + + + S Sbjct: 16 VLDQLRERIRYLHYSLPTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 ++ L + + + + RP+ T +++ + + Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230 RL + L +G+R S+ + V+ L + +I ++ Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193 Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265 + + A + + M Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253 Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 F FK +AG+ K + H +R AT +G + G V YT Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313 Query: 324 KGA 326 Sbjct: 314 HVL 316 >gi|29350147|ref|NP_813650.1| transposase [Bacteroides thetaiotaomicron VPI-5482] gi|29342059|gb|AAO79844.1| transposase [Bacteroides thetaiotaomicron VPI-5482] Length = 407 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 40/283 (14%), Positives = 93/283 (32%), Gaps = 27/283 (9%) Query: 72 KWLISEYRKSAHW------GSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHI 119 + L +R+ +A + +E+ D +++ + I Sbjct: 109 RTLFEVFREHNDKCVQLSGTDMAPATVQRYETSLKHTRDFVWETYHKKDVLLDEVSRQFI 168 Query: 120 RSGVESRK----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 K ++A ++L + + + + A+ + ++ +P L + Sbjct: 169 EDYEFWLKTEKKCCHNTATKYLKNFKKIIRIALAKGWMKNDPFLEIRF-SLDKVEPDFLE 227 Query: 176 KEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 ++Q+ S + + R F F ++GL SD +H+ + ++ + G Sbjct: 228 DSEIQKLISKEIDIPRLSQVRDIFVFCCFTGLAFSDIHGLRKEHIVEDSNGVRWIRKGRQ 287 Query: 233 ITVELPDGFM-----KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA- 286 T + + + K+L + + + + + K A G+ K+ Sbjct: 288 KTKIMCNIPLMEIPLKILEKYSTNEYCKKHGVLFPVLCNQKMNAYLKELADICGIKKTLT 347 Query: 287 -HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 H R AT + G + + G V Y + DR Sbjct: 348 THVGRHTFATFALANGVSIESVAKMLGHTNVQMTRHYARVLDR 390 >gi|258512500|ref|YP_003185934.1| integrase family protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479226|gb|ACV59545.1| integrase family protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 350 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 44/335 (13%), Positives = 91/335 (27%), Gaps = 30/335 (8%) Query: 44 IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103 A P + + + + + +A S + Sbjct: 8 ARVRADATRQPVPIDSPTSRKEQIRMSWLAAVDWFLANARRAGHKPGSIETRRQRIQAFA 67 Query: 104 RKSG--DFDYRKITTKHIRSGVES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158 + +T I++ V+ + + L ++ + V + NP Sbjct: 68 DWCAVRNLPPGYVTPDDIQNFVDHCLNINLSVFTINGRLRVLKTFYSEGVAEGIFLSNPA 127 Query: 159 LSVERPKRKTEGIRPWTKEDMQQFK----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214 V R + T + P +++ +Q+ + +L +GLR ++ A V Sbjct: 128 DGVRRLREPTNAVLPVSEDHVQKLLAVFDKRQWVEFRDLAITVLVLDTGLRIREALLAKV 187 Query: 215 QHLQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTP----------IGKETFFINND 260 + L K G TV +LL+ ++ Sbjct: 188 EDLDLREGALWVPPVHAKGGKGRTVYFGQATRELLSEWLRKRGVGSDLLFPSVYLDVSGA 247 Query: 261 KQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATI-SADAGATAHELMATYGWKTVDQ 318 ++ + A +AGV H +R A +G L G + Sbjct: 248 YHPLSRHAYWKRLAQYAERAGVPHIHPHQLRHTFAIQFLVRSGGDLVTLARQMGHSSTRT 307 Query: 319 AETYTKGAD---RIRLGIKN--SRRISSVVDSDDP 348 E Y A+ + L ++ + P Sbjct: 308 TERYLAVAETKAQKILTQQHSPIDHLGGAPGKRRP 342 >gi|147677583|ref|YP_001211798.1| site-specific recombinase XerD [Pelotomaculum thermopropionicum SI] gi|189030080|sp|A5D2W6|XERC_PELTS RecName: Full=Tyrosine recombinase xerC gi|146273680|dbj|BAF59429.1| site-specific recombinase XerD [Pelotomaculum thermopropionicum SI] Length = 306 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 44/288 (15%), Positives = 90/288 (31%), Gaps = 33/288 (11%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYF----DQIIRKSGDFD----YRKITTKHIRSGVES 125 I + + + + S++ D + G D I + R + Sbjct: 5 IDNFLVYLRVEKNASPRTTESYQKDLFHGLDYFASRLGKEDHAIVPSDIDHRIFRHYLAH 64 Query: 126 RKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ- 181 + ++ + L + R +++ R++ + NP L V PK + R +++ ++ Sbjct: 65 MQKQGLARATMARRLAAWRSFYRYLYREKIIDGNPLLRVASPKLEKRLPRFLYEDEAKEL 124 Query: 182 ---FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVEL 237 + G + R E L GLR S+ + L + I+ V L Sbjct: 125 VEAPDTKQPLGMRDRALLETLYAGGLRISELVLLDLGDLDISSGYIRVTGKRARERLVPL 184 Query: 238 PDGFMKLLAMTPIGKETFFI--------------NNDKQKMNATQFSIWFKAKATKAGVN 283 ++ L + N ++++A K + Sbjct: 185 GSMAVEALQAYLAKARPRLMANSVAKKINNALFLNCRGERLSARGIRKILDKYVEKVSLE 244 Query: 284 K--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + S H +R AT +AGA + G + + YT Sbjct: 245 RKISPHTLRHSFATHLLNAGADLRSVQELMGHVRLSSTQVYTHVTGER 292 >gi|326791706|ref|YP_004309527.1| integrase family protein [Clostridium lentocellum DSM 5427] gi|326542470|gb|ADZ84329.1| integrase family protein [Clostridium lentocellum DSM 5427] Length = 384 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 49/358 (13%), Positives = 104/358 (29%), Gaps = 55/358 (15%) Query: 15 RTRHGKIIY-YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 R +G Y YFR + + + AY K TL Sbjct: 29 RNANGTKKYKYFRAKTKKEL-------KAKVDAY------KMDVALNGKPLDKTTVTLSE 75 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFD-QIIR-KSGDFDYRKITTKHIRSGVESRKHTP- 130 + ++ +A + + + ++ I GD + IT I+ ++ Sbjct: 76 WVYQFLFVHVIHEVAPTTFHRYVNLYEVHIKDSYIGDIGLQCITHTQIQRYFNNKTDKAK 135 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT--EGIRPWTKEDMQQFKSFWSE 188 ++ + + FK A+ ++ NP + PK + I+ T ++ ++ Sbjct: 136 ATLQKIKNLLNKAFKSAIHNNFIRYNPMDGIIIPKTAKEAKEIKILTTQEQLRYIEASKA 195 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------------I 233 L LY+G+R + +++ +I +++ I Sbjct: 196 EPNG-LFLRLALYTGMRLGEVLALKWENVDLEQGTITVKESMKRSRVYSDDGNFIVEDVI 254 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDK----QKMNATQFSIWFKAKATKAGVN------ 283 ++L+ + I E + N + + T A +N Sbjct: 255 KEPKTKKGIRLIYIPDILIEELKQIEKEDGLVFDTNESTVNHMHDRICTAAKINPNKVYK 314 Query: 284 ---------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRL 331 H +R AT + + G K + Y+ D + Sbjct: 315 GETATTVYGVGIHALRHTLATRLLENNVNIKYVSDILGHKNITTTYNIYSHVLDDSKR 372 >gi|295837361|ref|ZP_06824294.1| integrase [Streptomyces sp. SPB74] gi|197696127|gb|EDY43060.1| integrase [Streptomyces sp. SPB74] Length = 426 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 47/404 (11%), Positives = 115/404 (28%), Gaps = 76/404 (18%) Query: 14 ERTRHGKI----IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 + + G+ +R+R+ + + S + Sbjct: 23 YQRKDGRWEAAGYVLAPGNTRKRVRVYGATRKGAMTKLTEKIAASNRGLPVA----AADS 78 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128 T+ ++ + L N+ + + + G ++TT+ +R+ ++ + Sbjct: 79 TVSAYLTYWLDGVAVHHLRENTHTRYAASIRLHLNPGIGAKKLARLTTRDVRTFLDGLRT 138 Query: 129 ---------------------------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161 +P + ++ + AVR++ + N +V Sbjct: 139 TCQCCARDRDSVRRSCCAIGQCCGKRLSPLTVTYVHAVLKSALEHAVREDELPRNVARNV 198 Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221 + + +P T + Q+ + G + +E L +GLR + + L + Sbjct: 199 KTTTPRPRRFQPLTATEAQRLLHAAN-GDRLHALYELALRTGLRKGELLGLHWEDLDLDG 257 Query: 222 FSIKTQKTGTII-------------------------------TVELPDGFMKLLAMTPI 250 + ++ E + + Sbjct: 258 GTASIHRSLQRTRSQGLTVLNTKTLASERRIALPTECLSSLKAHQERQQEERQTAGTSWT 317 Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMA 309 F + ++ T + F+ A + H +R +AT+ + G + Sbjct: 318 DNGLVFTTPKGKPLDPTNLTRSFRRLLHGAELRTIRFHDLRHSTATLLLEQGVDLVVIKE 377 Query: 310 TYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVVD----SDDP 348 G + Y R+RL + + S++ SDDP Sbjct: 378 LLGHAHIGVTAGVYAHV--RLRLQRQAIETLGSILGPTDASDDP 419 >gi|33594003|ref|NP_881647.1| site-specific tyrosine recombinase XerC [Bordetella pertussis Tohama I] gi|33564077|emb|CAE43345.1| putative integrase/recombinase [Bordetella pertussis Tohama I] Length = 326 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 37/298 (12%), Positives = 85/298 (28%), Gaps = 41/298 (13%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKH--- 128 ++++ + + ++ + Q+ +++ ++ HIR V Sbjct: 14 MADWLRHLQAHRRYSAHTLDGYTRDLRQLAQQAAAAGLPLERVANGHIRHFVARLHAQGL 73 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--- 185 P S + L + R ++W + NP V PK + + E Q Sbjct: 74 GPRSLARALAAWRGFYQWWAPAAGLPGNPATGVRAPKAPRGLPKALSVEQTQVLLDHAPA 133 Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----------- 230 + FE L SGLR ++ +++ + + ++ Sbjct: 134 RLATEPAALRDHAMFELLYSSGLRLAELVSLDLRYERTPEYESRSWLNRDDAEVIVVGKG 193 Query: 231 -TIITVELPDGFMKLLAMTPIGKETFFINNDK-------------QKMNATQFSIWFKAK 276 +V + + L + +++ + Sbjct: 194 GKRRSVPVGQSALAALDKWLQARPQLAAAGAGAQDAAALFVGARGRRIAPRVVQLQLARL 253 Query: 277 ATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 A AG+ H +R A+ + + G + + YT+ D L Sbjct: 254 AQAAGLPAHVHPHVLRHSFASHVLQSAQDLRAVQEMLGHANISTTQVYTR-LDFQHLA 310 >gi|167755354|ref|ZP_02427481.1| hypothetical protein CLORAM_00868 [Clostridium ramosum DSM 1402] gi|167704293|gb|EDS18872.1| hypothetical protein CLORAM_00868 [Clostridium ramosum DSM 1402] Length = 377 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 48/375 (12%), Positives = 106/375 (28%), Gaps = 43/375 (11%) Query: 5 LRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPK-REYINS 63 R + + + + Y + + ST+ +E I Sbjct: 2 PRRGENIFRRKDGRWEARYVKAISTNNKKLYGSVYASTYTEVKQKRENICNSLNKEKIKK 61 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR--- 120 L++ I E+ A + ++ ++ D ++ TK + Sbjct: 62 SNINNQVLEYYIVEWLNVYRIKFKAPTYVKYYNVIYNYLLPYFKDIKANELNTKQVELFT 121 Query: 121 -----SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 G + +P + L+ + + + + ++IN + PK++ E R + Sbjct: 122 ASLLKEGKNGKPLSPKTVKDILSLFKSIIGYIESEHNISINT--KIIYPKKQKEKERILS 179 Query: 176 KEDMQQ-FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234 KE+ ++ E + + +GLR + C + + I KT I Sbjct: 180 KEEFINLNQTLLQEIDSCKFGVLIAMATGLRIGELCALKWKDISLKENYIYVNKTMQRIK 239 Query: 235 VELPDGFMKLL-------------------------AMTPIGKETFFINNDKQKMNATQF 269 D ++ + + Sbjct: 240 NIYSDNPKTIIIEDSPKSSTSNRKIPIPANLITLFKQFRQNDDCYLLTGRSDKFVEPRSL 299 Query: 270 SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWK-TVDQAETYTKGA- 326 F+ AG+ K + H +R AT+ + G L G + + Y + Sbjct: 300 ERKFRKYIKNAGIEKANFHMLRHTFATMCIEGGFEIKCLSEILGHSGSQITLDRYVHSSF 359 Query: 327 DRIRLGIKNSRRISS 341 D + + S+ Sbjct: 360 DLKK---SWIDKFSN 371 >gi|254518744|ref|ZP_05130800.1| phage integrase [Clostridium sp. 7_2_43FAA] gi|226912493|gb|EEH97694.1| phage integrase [Clostridium sp. 7_2_43FAA] Length = 292 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 30/261 (11%), Positives = 88/261 (33%), Gaps = 20/261 (7%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESR 126 K +++ Y+++ + N+ ++ + + ++ + ++ + S+ Sbjct: 2 KEIVNNYKEALLKSHKSENTVYAYVTDVNLYVKYLKSKNMSIDETDNVSVLGYIQYLLSQ 61 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-- 184 + S + + S+R + + Q+ V+ P + + + T +++ + Sbjct: 62 GKSERSINRIVISLRSFYNYLKDQKVVSEIPKIYYKNTTTTKKLPEILTIDEVDRIIKIV 121 Query: 185 --FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241 ++G + E + +G++ S+ V + + +K + + Sbjct: 122 DKDCNKGIRDNALLELMYATGMKVSEIIGLNVYDINLELNFVKCHDNKNYERLIPIGRSA 181 Query: 242 MKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291 + L ++ F+N + + K + KAG+ K + + R Sbjct: 182 TEALKEYLKIRDQVASAGVETLFVNLNGNHLTRQGVWRIVKEYSHKAGIKKEVNLNTFRH 241 Query: 292 FSATISADAGATAHELMATYG 312 A GA + G Sbjct: 242 SFAVHLLQNGANVRAVQKLLG 262 >gi|126665396|ref|ZP_01736378.1| putative integrase/recombinase [Marinobacter sp. ELB17] gi|126669108|ref|ZP_01740038.1| putative integrase/recombinase [Marinobacter sp. ELB17] gi|126626435|gb|EAZ97102.1| putative integrase/recombinase [Marinobacter sp. ELB17] gi|126630024|gb|EBA00640.1| putative integrase/recombinase [Marinobacter sp. ELB17] Length = 331 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 42/299 (14%), Positives = 86/299 (28%), Gaps = 34/299 (11%) Query: 71 LKWLISEYRKSA--HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI--------- 119 L I + +LA+N++ S+ Q++ + I + Sbjct: 7 LGPWIRRFLLEHLVAERNLALNTQKSYRDMLMQLLPYLAGKANKAIDRLTVDDFSPQAVR 66 Query: 120 ---RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-------E 169 + R T S+ Q L + L ++ I C + K Sbjct: 67 LFLSHMEQQRNCTISTRNQRLGGIHALARFIAEHSPEHIGWCAQIRLIPFKKTSQPAIIY 126 Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229 +P + +G + + FL SG R S++ + + + + ++ Sbjct: 127 LDKPEMDALLAAPDDHTEQGRREQALLLFLYNSGARVSEAVQLKIGDIDWHAQCVRVVGK 186 Query: 230 -GTIITVELPDGFMKLLA---MTPIGKETFFINNDKQKMNATQFSIWFKAKATK------ 279 L ++ L + F+N Q M + K A + Sbjct: 187 GNKQRRCPLWTSTLERLHVLVDGREATQPVFLNRCHQPMTRSGIHTLVKRCAARACARAP 246 Query: 280 --AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKN 335 S H +R +A AG + + A G ++ Y + + + Sbjct: 247 SLLNKPVSPHVIRHSTACHLLQAGVDINTIRAWLGHVSLTTTNIYAEIDLETKARALAA 305 >gi|296163572|ref|ZP_06846310.1| integrase family protein [Burkholderia sp. Ch1-1] gi|295886175|gb|EFG66055.1| integrase family protein [Burkholderia sp. Ch1-1] Length = 399 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 55/359 (15%), Positives = 101/359 (28%), Gaps = 27/359 (7%) Query: 9 PFVTKERTRHGKI----IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE----- 59 P + T G+ Y G R+ L E T A A R+ Sbjct: 29 PGFLCKITPAGRKVFMLQYRTNAGERRKPALGQYGELTVDQARTMAQEWLAEVRKGGDPS 88 Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKH 118 + +K T+K + + +++ ++ D+ II G + + Sbjct: 89 AAKNAARKAPTMKEFCHTFMEDYSKQRNKPSTQRGYQGVIDRCIIPNMGRMKVQDVKRPD 148 Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + ++ + + A + +R +F A P +D Sbjct: 149 VAALMKKLAYKRAEANRTFGVLRKMFNLAEVWGLRPDGTNPCRHVPMYPPGKETRLIVDD 208 Query: 179 MQQFKSFWSEGSQPR--------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230 E + LA R S+ C + + + Sbjct: 209 ELVRIFRQLEHLEAEGLENYVIPLAIRLQFEFAARRSEICPLEWDWIDLEKRRVVWPDSK 268 Query: 231 TIITVELPDGFMKLL-----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 T + L N+ + M + + AGV Sbjct: 269 TGGISKPMSEEAYRLLSTAPRREGSPYVLPSPNDPTRHMTYGEQYGGWTRVLKAAGVPHV 328 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIK--NSRRIS 340 HG+R + T A++G M G KTV Y D+ +R + SRR++ Sbjct: 329 GTHGIRHRATTDIANSGVPTKVGMKLTGHKTVAMFMHYVHTEDKPVRDAAELVASRRLA 387 >gi|282920050|ref|ZP_06327778.1| hypothetical protein SASG_02692 [Staphylococcus aureus subsp. aureus C427] gi|282316221|gb|EFB46601.1| hypothetical protein SASG_02692 [Staphylococcus aureus subsp. aureus C427] Length = 390 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 50/388 (12%), Positives = 108/388 (27%), Gaps = 58/388 (14%) Query: 14 ERTRHGKIIYYFRKGH----GRRIRLPYPHESTFIPAYM-SALTGSTPKREYINSPRKKP 68 R Y G G+ + A + + + +P Sbjct: 4 YEKRGNTWRYRISLGKDAETGKYKYISNSGFKRKSDAKHHAEMVERQLRNGEYIAP--ST 61 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-- 126 +T K + ++ S + + V+S + E + I + + + I + V Sbjct: 62 STFKQVADDWI-SQYANEVKVSSVRAREKAINHAIERFNNKPIQTINKHEYQRFVNDISA 120 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK--- 183 +++ + + S ++FK+A + + I P ++RPK+K E ++F Sbjct: 121 QYSKNYVDSIIASTNMIFKYAYDMKLIRILPSEGIKRPKKKVSVEELEDTEIYKKFLEKD 180 Query: 184 ---------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI---------- 224 F L Y+G+R + + +I Sbjct: 181 ELFQFLEIAKNHHSPQNSFEVFCTLAYTGMRAGELLALKWSDIDFENNTINITKTYYNPN 240 Query: 225 ---------------------KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK 263 ++ D + F + + Sbjct: 241 NNKKQYQILTPKTESSIGKISVDPHVIKLLKNYKTDVQDTWKNELYVDNNFVFTDVNGYP 300 Query: 264 MNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320 + + +W KA K + S H R + +AG E+ K ++ Sbjct: 301 LVIKKLQLWIKAILKKTDITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTM 360 Query: 321 -TYTKGADR-IRLGIKNSRRISSVVDSD 346 Y K + + + ++ V D Sbjct: 361 NIYAKITNSYKKDASQKFSKLMENVSKD 388 >gi|258538870|ref|YP_003173369.1| phage-related integrase [Lactobacillus rhamnosus Lc 705] gi|257150546|emb|CAR89518.1| Phage-related integrase [Lactobacillus rhamnosus Lc 705] Length = 383 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 53/384 (13%), Positives = 111/384 (28%), Gaps = 55/384 (14%) Query: 11 VTKERTRHGKIIYYFR--------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62 + + + G Y G RRI + A + T + + Sbjct: 4 IKRYKNSSGDTRYEIFVSAGTDELTGKKRRIHKRGFRDKKEAA---LAASRFTLDADAGS 60 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122 + T K + E+ + ++ ++ G+ KITT ++ Sbjct: 61 LSTNRSMTFKAVYLEWDAAYKNTVRESTYERTYIQIKKHVLPLFGNKPINKITTAQLQQA 120 Query: 123 VESRKHTP-SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 V + ++LT+ + ++A+R+ Y+ NP V PK K + +Q Sbjct: 121 VNQWSKQVTRNYRRWLTTASRILRFALRRGYINKNPADLVIIPKEKEQIGDVAANFWDKQ 180 Query: 182 FKSFWSEGSQPR------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFS------------ 223 + + + F L + GLR + + + + Sbjct: 181 ELTRFFSYIDAKQEPQKTALFRILAFGGLRRGECLALTWKDISFTDSTITVNKTLSQGMN 240 Query: 224 -----IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF--------- 269 + + T+ + M L + + ++ Q Sbjct: 241 GRQLVQPPKTRKSRRTITMDSKTMSALKHWRLVQLQKYMALGFNANKPDQLVFSNSKNKH 300 Query: 270 ------SIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-E 320 + W K+ + + HG R A+ AGAT E+ G V Sbjct: 301 LLLHKPADWLKSIEDTHKIEHRITIHGFRHSHASALFSAGATVKEVQERLGHSDVKTTLN 360 Query: 321 TYTKGADRIRLGIKNSRRISSVVD 344 YT + ++ + ++ Sbjct: 361 IYTHVT--KNQNKEAVNKLVAYLN 382 >gi|313634565|gb|EFS01051.1| toxin-antitoxin system, toxin component, PIN family [Listeria seeligeri FSL N1-067] Length = 381 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 52/369 (14%), Positives = 115/369 (31%), Gaps = 50/369 (13%) Query: 9 PFVTKERTRHGKIIYYFRKG------HGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62 + ++ Y FR G+R + T A M E Sbjct: 3 KRIKSYLNSKNEVRYMFRVYAGIDNMTGKRKQTTRRGFKTEREAKMELKRIEMQIFEEGG 62 Query: 63 -SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIR 120 +KKP + + S + + ++ ++ + +F+ I+ D KI + Sbjct: 63 LKTQKKPLKFEEVYSTWLELYT-QTVKESTLERTKIFFNHHILPVFSDKFIDKIDIHFCQ 121 Query: 121 SGVESRKHT-PSSAIQFLTSMRVLFKWAVRQEYVAINPCL-----SVERPKRKTEGIRPW 174 + + + P+S + +FK+A+ + +P E +++ + I + Sbjct: 122 QVINAWSKSNPTSYKRLKNLTSRVFKYAISLHLIESDPFAFVVVPRGEMIEKEEKDITFY 181 Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-- 232 K +++ F + + F L ++GLR S++ Q + N + KT + Sbjct: 182 DKYELRSFLDTVKDDTFKYTFFYLLAFTGLRKSEALALTWQDVDLNNKRLYINKTLSRGE 241 Query: 233 ---------------ITVELPDGFMKLLAMTPIGKETFFI---------------NNDKQ 262 + + + +L + N Sbjct: 242 HARILVNTTKTKAGKRDISIDASTVDVLKKWKSYQRGNHHILRLDKVQIIFDNKGNYYNP 301 Query: 263 KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ET 321 + FK + ++HG R A++ +AGA+ ++ G + Sbjct: 302 SSTYSWLDNIFKHHTELKKI--TSHGFRHTHASLLFEAGASLKDVQERLGHADIQTTSNI 359 Query: 322 YTKGADRIR 330 YT + Sbjct: 360 YTHVTQEKK 368 >gi|251783530|ref|YP_002997835.1| DNA integration/recombination/inversion protein [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242392162|dbj|BAH82621.1| DNA integration/recombination/inversion protein [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 387 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 66/389 (16%), Positives = 124/389 (31%), Gaps = 57/389 (14%) Query: 10 FVTKERTRHGKIIYYFR--------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61 + + + ++G I+Y G R + + AL Y Sbjct: 2 NIKEYKKKNGTIVYRTSVYLGVDQVTGKKARTTITASTKKGVKIKARDALNN-FAMNGYT 60 Query: 62 NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIR 120 + TT K L + + +S ++ NSR S E I+ GD ++TT I+ Sbjct: 61 VKEKPTVTTYKELTALWWESYK-NTIKPNSRQSMEGIVRLHILPAFGDCKLSRLTTPVIQ 119 Query: 121 SGVESR------KHTPSSAIQ-FLTSM-RVLFKWAVRQEYVAINPCLSVERPKRKT---E 169 V + A FL ++ R + ++ V + + NP V P+++ Sbjct: 120 QQVNKWANNANKGIKGAYANYSFLNNINRRILQYGVTMQVIEHNPARDVIIPRKQNNKEH 179 Query: 170 GIRPWTKEDMQQFKSF-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222 ++ ++ ++++QF ++ E + ++ LL +G R + + Sbjct: 180 KVKFFSNQELKQFLNYLDDLDLSSYENFFDYVLYKTLLATGCRIGEVLALEWSDIDLEKG 239 Query: 223 SIKTQKTGTI-------------ITVELPDGFMKLLAMTPIGKETFFIN------NDKQK 263 +IK KT +E+ + LL ++ + Sbjct: 240 TIKVSKTLNRYQETNTPKSKAGLRDIEIDRATVLLLKQYKNRQQVLSWDLGRSETIVFTP 299 Query: 264 MNATQ-----FSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD 317 + AGV S HG R ATI AG A +L G + Sbjct: 300 FTTKYAYACLLRKRLQKHFKAAGVPDISFHGFRHTHATIMLYAGIEAKDLQYRLGHSNIS 359 Query: 318 QA-ETYTKGADRIRLGIKNSRRISSVVDS 345 TY K + + + Sbjct: 360 MTLNTYVHAT--KEGAKKAVSIFETAISN 386 >gi|209919452|ref|YP_002293536.1| putative phage integrase [Escherichia coli SE11] gi|209912711|dbj|BAG77785.1| putative phage integrase [Escherichia coli SE11] Length = 342 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 55/335 (16%), Positives = 105/335 (31%), Gaps = 38/335 (11%) Query: 5 LRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64 +LPP V K K YYF+ I L ++ + ++ + Sbjct: 11 NKLPPRVYKN-----KYSYYFKPTPRECITLGKINDLSIAQVWVKYEEILNDAIDV---- 61 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 T L +++ S ++ L ++ + + +++ G I H+R ++ Sbjct: 62 ----MTFSKLWNKFLNSTYYLELGQRTQKDYLQHQKKLLAAFGKMKADNIKPAHVRLYMD 117 Query: 125 SRKHTPSS-AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 R + A SM +F+W + YV NPC + + R + D + Sbjct: 118 KRGLKSKTQANHEKASMSRVFRWGYERGYVKGNPCQG---VSKFSLKPRDYYFTDEEYIA 174 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 + + A E R D + + + I+ KTG + + Sbjct: 175 IYQEASPVLQCAMEIAYLCATRIGDIRKLTWDQVMSKGLFIQQGKTGKKQIKQYSERLTF 234 Query: 244 LLAMTPI--GKETFFINNDKQKMNATQFSIWFKAKATKA------GVNKSAHGVRKFSAT 295 L G+ N + + T F+ ++ A + + H + Sbjct: 235 ALEQAKSLGGQHFVVCNKYGGQYSYTGFNDIWRKARAAASEKLGYPITGTFHDL------ 288 Query: 296 ISADAGATA-----HELMATYGWKTVDQAETYTKG 325 G + E G KT Q TY + Sbjct: 289 --KAKGISDYDGSSKEKQLFSGHKTEAQVLTYDRK 321 >gi|163853185|ref|YP_001641228.1| integrase family protein [Methylobacterium extorquens PA1] gi|163664790|gb|ABY32157.1| integrase family protein [Methylobacterium extorquens PA1] Length = 334 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 37/318 (11%), Positives = 85/318 (26%), Gaps = 15/318 (4%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 R R R+ I + ++ + + T+ L Sbjct: 5 RKRGSSWQAQVRRQGSSPISKSFTSKADALLWARETERSIDRAELPTTIKDLQQITVADL 64 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVESRKH--TPS 131 ++ Y I K+T + + R + Sbjct: 65 LARYEAEVTAKKRGA---DRERYKLRVIRSHPLASLSLAKLTAVAVSRYRDDRLKVVQGA 121 Query: 132 SAIQFLTSMRVLFKWAVRQE--YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + + L ++ F+ A ++ + NP + P + E Q+ + Sbjct: 122 TVRRELAILQHCFEVARKEWGTPLPTNPVHGITLPDPSRARDQRLEPEAGQKLHAAIGSA 181 Query: 190 SQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247 L L +G+R + H+ + + T + + Sbjct: 182 HAWYLRPLMELAIETGMRRGELLSLQWCHVSLDKRTAHLPITKNGHARTVALTPRAI--- 238 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHE 306 I K + ++ + ++ +AG+ H +R + + +AG + E Sbjct: 239 -EILKALPQTDGRVLPVSGNAVRLAWERLRKRAGLPSLRFHDLRHEAVSRFFEAGLSIPE 297 Query: 307 LMATYGWKTVDQAETYTK 324 + G + YT Sbjct: 298 VALMSGHRDTRMLMRYTH 315 >gi|241992512|gb|ACS73592.1| IntI1 [uncultured bacterium] gi|241992515|gb|ACS73594.1| IntI1 [uncultured bacterium] gi|241992526|gb|ACS73602.1| IntI1 [uncultured bacterium] gi|241992530|gb|ACS73605.1| IntI1 [uncultured bacterium] gi|241992537|gb|ACS73610.1| IntI1 [uncultured bacterium] gi|241992541|gb|ACS73613.1| IntI1 [uncultured bacterium] gi|241992546|gb|ACS73616.1| IntI1 [uncultured bacterium] gi|241992555|gb|ACS73622.1| IntI1 [uncultured bacterium] gi|241992568|gb|ACS73632.1| IntI1 [uncultured bacterium] gi|241992575|gb|ACS73637.1| IntI1 [uncultured bacterium] gi|241992618|gb|ACS73667.1| IntI1 [uncultured bacterium] gi|241992621|gb|ACS73669.1| IntI1 [uncultured bacterium] gi|241992633|gb|ACS73677.1| IntI1 [uncultured bacterium] gi|241992638|gb|ACS73681.1| IntI1 [uncultured bacterium] gi|241992641|gb|ACS73683.1| IntI1 [uncultured bacterium] gi|241992644|gb|ACS73685.1| IntI1 [uncultured bacterium] Length = 315 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 35/302 (11%), Positives = 84/302 (27%), Gaps = 52/302 (17%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132 ++ + R+ + ++ + ++ + IR G + + + + + + S Sbjct: 16 VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 ++ L + + + + RP+ T +++ + + Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230 RL + L +G+R S+ + V+ L + +I ++ Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193 Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265 + + A + + M Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253 Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 F FK +AG+ K + H +R AT +G + G V YT Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313 Query: 324 KG 325 Sbjct: 314 HV 315 >gi|120597821|ref|YP_962395.1| phage integrase family protein [Shewanella sp. W3-18-1] gi|120598661|ref|YP_963235.1| phage integrase family protein [Shewanella sp. W3-18-1] gi|120557914|gb|ABM23841.1| phage integrase family protein [Shewanella sp. W3-18-1] gi|120558754|gb|ABM24681.1| phage integrase family protein [Shewanella sp. W3-18-1] Length = 287 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 35/267 (13%), Positives = 80/267 (29%), Gaps = 21/267 (7%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRK 127 L+ ++ + +R ++ Q+ ++ + IT + + + R Sbjct: 2 SSLLQQFHDEISLRGYSARTRNAYLYAITQL-QQYANQPLDNITDEQLTAYFRYLNLERH 60 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 H+ ++ L + ++ +++++ + + Sbjct: 61 HSRATLKLQLNGIHFFYEHVLKRDFTIQLSLPKR------PHKLPQLLSCQDIAALLYHC 114 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLL 245 + + R GLR S+ V + +K + V + + LL Sbjct: 115 QSLKQRAMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGKGACDRWVIISPTLLTLL 174 Query: 246 AMTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297 ++ ++ + F A AG+ S H +R AT Sbjct: 175 RQYWQAYHPVEWLFASTYHDVVYPLHESTFRKALAKAARLAGITKPCSPHSLRHAYATHQ 234 Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324 AG H+L A G ++ E Y Sbjct: 235 LQAGMPLHQLQAQLGHHSIKSTERYLH 261 >gi|241992610|gb|ACS73661.1| IntI1 [uncultured bacterium] Length = 315 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 35/302 (11%), Positives = 84/302 (27%), Gaps = 52/302 (17%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132 ++ + R+ + ++ + ++ + IR G + + + + + + S Sbjct: 16 VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 ++ L + + + + RP+ T +++ + + Sbjct: 76 VSTHRQALTALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230 RL + L +G+R S+ + V+ L + +I ++ Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193 Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265 + + A + + M Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253 Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 F FK +AG+ K + H +R AT +G + G V YT Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313 Query: 324 KG 325 Sbjct: 314 HV 315 >gi|315615273|gb|EFU95909.1| integrase [Escherichia coli 3431] Length = 343 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 50/340 (14%), Positives = 95/340 (27%), Gaps = 47/340 (13%) Query: 11 VTKERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 +T + +GK + Y +G+R+R A+ S K+ ++ + Sbjct: 1 MTIRKQPNGKWLCECYPNGRNGKRVR-KQFATKGEAIAFESFTMEEVNKKPWLGEKDDRR 59 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESY---FDQIIRKSGDFDYRKITTKHIRSGVES 125 L LI + SL + + I GD ++T E+ Sbjct: 60 R-LSELIELWY------SLYGQTLADPKRLMAKLRIICNGLGDPIASELTAGDFTKYREA 112 Query: 126 R--------------KHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEG 170 R P + ++ +F + + A NP + K Sbjct: 113 RLKGEIRNEDGTLMSPVKPRTVNLEQRNLSSVFGTLKKLGHWSAPNPLAGLPTFKIAEGE 172 Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFE--FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228 + + +++++ + +E P L L +G R S++ L + K Sbjct: 173 LAFLSTDEIKRLLAACAESQSPSLLMIAKICLATGARWSEAENLQGHQLSKYRITYTKTK 232 Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---- 284 TV + L T F+ +AG+ Sbjct: 233 GKKNRTVPISQDLYNELPKNRGRLFTPC-------------RKAFERAVKRAGIELPEGQ 279 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R A+ G L G + Y Sbjct: 280 CTHVLRHTFASHFMMNGGNILVLRDILGHADIKMTMIYAH 319 >gi|214027192|gb|ACJ63266.1| IntI1 integrase [Escherichia coli] Length = 337 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 34/303 (11%), Positives = 83/303 (27%), Gaps = 52/303 (17%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132 ++ + R+ + ++ + ++ + IR G + + + + + + S Sbjct: 16 VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 ++ L + + + + RP+ T +++ + + Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230 RL + L +G+R S+ + V+ L + +I ++ Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193 Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265 + + A + + M Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253 Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 F FK +AG+ K + H +R AT +G + G V Y Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYX 313 Query: 324 KGA 326 Sbjct: 314 HVL 316 >gi|209516758|ref|ZP_03265610.1| integrase family protein [Burkholderia sp. H160] gi|209502875|gb|EEA02879.1| integrase family protein [Burkholderia sp. H160] Length = 336 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 38/294 (12%), Positives = 84/294 (28%), Gaps = 39/294 (13%) Query: 71 LKWLISEYRKSA--HWGSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIR 120 L + + +L+ N++ S+ F ++ ++ + ++ Sbjct: 7 LGPWLKRFLLEYLIKERNLSRNTQKSYRDTFRLLLPFLVRQARKSADRLTIDDVSDQRVK 66 Query: 121 SGVESRKHTPS----SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + + + T + Q L ++R L + + + C + K T Sbjct: 67 AFLADIEQTRHCGVVTRNQRLAALRSLANFIGQNSPEHLQWCGQIRVLPFKKAPRSTITY 126 Query: 177 EDMQQFKSFWSEGS-------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229 + + + + FL +G R ++ + + L + + + Sbjct: 127 LEKPEMDELLAAAQGPSAQQRRDHALLLFLYNTGARADEAAQVTIADLHVALVPKRDLSS 186 Query: 230 GTIITVELPDGFMKL----------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279 TI L L E F+N + + K Sbjct: 187 VTIRGKGNKLRQCPLWLQTIAEIVPLIDGRGSTEHVFLNRRAVPITRFGIHTLVERYVQK 246 Query: 280 AGVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 A V S H +R + T AG + + A G ++D Y + Sbjct: 247 AAVKVPSLTLKRVSPHTLRHTAGTHLLRAGVDINTIRAWLGHVSIDTTNIYAET 300 >gi|229020853|ref|ZP_04177558.1| Integrase/recombinase [Bacillus cereus AH1273] gi|229022059|ref|ZP_04178613.1| Integrase/recombinase [Bacillus cereus AH1272] gi|228739211|gb|EEL89653.1| Integrase/recombinase [Bacillus cereus AH1272] gi|228740440|gb|EEL90733.1| Integrase/recombinase [Bacillus cereus AH1273] Length = 315 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 36/292 (12%), Positives = 93/292 (31%), Gaps = 20/292 (6%) Query: 46 AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK 105 A T T I + TT + ++ + +L + + Sbjct: 7 AVSKRRTLLTEDELKIATKSTYVTTDEEALNLFYTDCQLRNLRPYTIKYYRESLQT---- 62 Query: 106 SGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162 +T I++ + + ++ L + + + + + +++ NP ++ Sbjct: 63 -KIKPLVLMTEDDIKNMIMEMQRRGLKVTTINTKLRAFKSFYNFLHKHKHIKKNPIADIK 121 Query: 163 RPKRKTEGIRPWTKEDMQQ----FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218 K++ E + +K+ ++ G + +L + +R ++ V ++ Sbjct: 122 LLKQRKEVVPTLSKDQIKLLLSLCDRKTFVGVRDYTIMMLMLDTAIRVNELANIEVADVK 181 Query: 219 NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN-----ATQFSIWF 273 +N I+ KT V + + + + + + + Sbjct: 182 HNEIVIRETKTFFERIVPMSKKLKEQMEIYIKIRGYAESDKLFLNQDGNELKKRSIQTRI 241 Query: 274 KAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 + +G+ SAH R SA + G A L G +++ + Y Sbjct: 242 EYYGKLSGIKDVRVSAHTFRHTSAKLFIQNGGNAFHLQQLLGHTSLEITKKY 293 >gi|82542847|ref|YP_406794.1| phage integrase [Shigella boydii Sb227] gi|81244258|gb|ABB64966.1| putative phage integrase [Shigella boydii Sb227] Length = 387 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 54/376 (14%), Positives = 108/376 (28%), Gaps = 61/376 (16%) Query: 17 RHGK-IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75 R G+ F +G+R + A T + Sbjct: 5 RRGEIWYASFTLPNGKRFKQSL-GTKDKRQATELHDKLKAEAWRVSKLGEIPDITFEEAC 63 Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP----- 130 + + S +S ++ R IT I S ++ + Sbjct: 64 VRWLEEKAHKK----SLDDDKSRIGFWLQHFAGMQLRDITESKIYSAMQKMTNRRHEENW 119 Query: 131 ------------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 ++ L+ ++ L + A +E+ ++ ++ P+ Sbjct: 120 KLRAEACRKKGKPVPEYTPKPASVATKATHLSFIKALLR-AAEREWKMLDKAPIIKVPQP 178 Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IF 222 K + IR + Q+ E + EF L +GLR S+ Q + Sbjct: 179 KNKRIRWLEPHEAQRLIDECPE--PLKSVVEFALATGLRRSNIINLEWQQIDMQRRVAWI 236 Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------------FS 270 + + K+ I V L D ++L + + + Sbjct: 237 NPEESKSNRAIGVALNDTACRVLKKQIGNHHRWVFVYKESCTKPDGTKAPTVRKMRYDAN 296 Query: 271 IWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +KA +AG++ H +R A+ AG L GW++++ Y Sbjct: 297 TAWKAALRRAGIDDFRFHDLRHTWASWLVQAGVPLSVLQEMGGWESIEMVRRYAH----- 351 Query: 330 RLGIKNSRRISSVVDS 345 L + + +DS Sbjct: 352 -LAPNHLTEHARQIDS 366 >gi|308173707|ref|YP_003920412.1| phage integrase [Bacillus amyloliquefaciens DSM 7] gi|307606571|emb|CBI42942.1| putative phage integrase [Bacillus amyloliquefaciens DSM 7] Length = 381 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 48/360 (13%), Positives = 103/360 (28%), Gaps = 47/360 (13%) Query: 15 RTRHGKIIYYFRKGH---GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 R R Y + +I + T A ++A + L Sbjct: 5 RKRGSTWQYRIKHKDPLTHEQIEVSKGGFKTKKEAQLAARQEELRLNSDLEI-NGGDVLL 63 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 K + ++ G++ N+ I E +I+ D + I + + Sbjct: 64 KHYLKDWLTEYKQGTVRKNTYILHERNVKTKILPYFKDIKLKDIKPLRYQKFINHLAEQG 123 Query: 131 SSAIQF-------LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 S ++ K + E + PK+K + + + K Sbjct: 124 YSKRTIEIIHGTMFNALSTAVKPLKKLEENPCEGVTIPKIPKKKEKLAYINSDDISFFLK 183 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--------------- 228 + + F+ LL +G+R ++ + + I K Sbjct: 184 IARQDNYLYYIFFKTLLETGMRKGEAAALQRKDIDLKNNYIHINKSLDFQVKEGEERFGE 243 Query: 229 ---TGTIITVELPDGFMKLLAMTPIGKETF---------------FINNDKQKMNATQFS 270 + +++ + K L F D + + + Sbjct: 244 TKTYESERRIKISNSLAKELTAHMKYLNDNRIVFNEVYEHELDLVFCREDGKPLPKSTLF 303 Query: 271 IWFKAKATKAGVNKSA-HGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADR 328 K+G+NK HG+R A + ++GAT + G K + + Y+ +++ Sbjct: 304 NALNRILKKSGLNKMPIHGLRHTHAVLLLESGATMKFVQERLGHKNITITSDVYSHISEK 363 >gi|295102865|emb|CBL00410.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii L2-6] Length = 387 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 48/380 (12%), Positives = 107/380 (28%), Gaps = 51/380 (13%) Query: 6 RLPPFVTKERTRHGKIIYYFRKGHGRRIR---LPYPHESTFIP-AYMSALTGSTPKREYI 61 R + K + + Y + G+ I Y + A++G Sbjct: 3 RRGENIHKRKDGRWEGRYIKGRADGKAIWGYLYGYSYSEVKTELTRRKAMSGFYQLSG-- 60 Query: 62 NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIR 120 L + S + ++ ++ ++ GD ++ + Sbjct: 61 -----ASMRFSELAELWLASF-AQGVKESTLTHYQYTLHKYLLPVLGDLPVSELNESTLE 114 Query: 121 S---------GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 + SSA + ++ + K+A R ++ L V+ P++K Sbjct: 115 RLFLQILSPSDNSHKPLGTSSAQECFGMLKRICKYAAR-LHLMPPLELCVKLPRQKKAEP 173 Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEF-LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230 RP + + +SF + PR + GLR + C + Q+T Sbjct: 174 RPLSLAEQAALRSFLLDPPTPRKIGVLLQMELGLRIGEVCGLKWSDFDLKNGILTIQRTV 233 Query: 231 TIITVELPD------------------------GFMKLLAMTPIGKETFFINNDKQKMNA 266 I + ++ L+ F + + + Sbjct: 234 CRIPLGDGHTKLIVQTPKTRKSTREIPLSTGLVAILRKLSKDVTPDTWFLSGTESRPVEP 293 Query: 267 TQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 + + ++ + H +R AT AG L G + + Y Sbjct: 294 RCYRKSIRCYLKRSALRTIHPHVLRHTFATTCLQAGCDIKTLSELLGHANANVTLQRYVH 353 Query: 325 G-ADRIRLGIKNSRRISSVV 343 +R + ++ +S + Sbjct: 354 SDLNRKQKALQRVYALSDRI 373 >gi|124265741|ref|YP_001019745.1| hypothetical protein Mpe_A0548 [Methylibium petroleiphilum PM1] gi|124258516|gb|ABM93510.1| conserved hypothetical protein [Methylibium petroleiphilum PM1] Length = 334 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 45/305 (14%), Positives = 87/305 (28%), Gaps = 38/305 (12%) Query: 58 REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117 R L+ LI Y + + ++ D + K G +T Sbjct: 24 PPPAPGVRDGSIALRHLIDAYMAAYAGRDTS-RTQR-----LDWWVAKLGGVSLADLTDD 77 Query: 118 HI------------------------RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYV 153 H+ + R P++ ++ ++ + WA R+ Sbjct: 78 HVFTALEQLATQRGRYFAGKDADGKPVMKAKRRPLAPATLNRYQAALSAVLTWAQRRRIA 137 Query: 154 AINPCLSVERPK---RKTEGIRPWTKEDMQQFKSFWSEGSQPRLA--FEFLLYSGLRCSD 208 N + K E +R + + + + S PRL L +G R + Sbjct: 138 PKNWQNPCRHVELKAEKNEIVRFLSDAERTALLAACRKSSWPRLYLLVMMGLTTGARRGE 197 Query: 209 SCRAGVQHLQNNIFSIKTQKTGT--IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA 266 + ++ + L + LA + ++ A Sbjct: 198 LEALRWADVDLERAEAAVHRSKNGDKKVLPLVPAVVDELAKHAGAANALVFPSTRRPDIA 257 Query: 267 TQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 F + AGV H +R A+ A GAT E+ G + + + Y+ Sbjct: 258 YNFDPAWDRALKAAGVKSFRFHDLRHSCASALAQNGATLLEIAEVLGHRQLSVTKRYSHL 317 Query: 326 ADRIR 330 A + Sbjct: 318 ATDHK 322 >gi|312869134|ref|ZP_07729308.1| phage integrase, N-terminal SAM domain protein [Lactobacillus oris PB013-T2-3] gi|311095380|gb|EFQ53650.1| phage integrase, N-terminal SAM domain protein [Lactobacillus oris PB013-T2-3] Length = 295 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 43/286 (15%), Positives = 99/286 (34%), Gaps = 24/286 (8%) Query: 72 KWLISEYRKSAH-WGSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHI---RSGVE 124 + L+ +Y + N+ +S+ DQ ++ G + + + + + Sbjct: 2 EELVDKYLAYLKGSQGRSANTLMSYRRDLDQAAAFLQAQGVGKWSAVDQYQLLALIAEQK 61 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK- 183 R +P++ + L+++R +++ VR + + NP V+ + + E + Sbjct: 62 KRGRSPATINRQLSALRQFYRYLVRHQQLRFNPMELVDNQQLTEKLPPEILTEPEIKQLL 121 Query: 184 ----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELP 238 + G + R L +G+R S+ V L +I I+ V + Sbjct: 122 AAPDQAHALGKRDRALLAVLATTGMRVSELVDLLVTDLHLDIKMIRLGSGGRRERLVPIS 181 Query: 239 DGFMKLLAMT---------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287 D ++ L G++ F+N ++ + +AG+ K + Sbjct: 182 DQAVQELKQYLAAVRPLLVAEGEQAVFVNAHGHQLTRQGVWKNLRTLVRQAGIEKAVTPR 241 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 +R A +GA + G+ + + Y K + Sbjct: 242 TLRYSFAVHLLRSGADGRLIQEMLGYSELRAIKPYLKMTVQELSAD 287 >gi|158425506|ref|YP_001526798.1| putative integrase protein [Azorhizobium caulinodans ORS 571] gi|158332395|dbj|BAF89880.1| putative integrase protein [Azorhizobium caulinodans ORS 571] Length = 445 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 54/354 (15%), Positives = 96/354 (27%), Gaps = 37/354 (10%) Query: 21 IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKR----EYINSPRKKPTTLKWLIS 76 + Y +G RR + T A +A + R T+ + Sbjct: 48 VQYRTPEGRHRRRVIGRYGLMTVEQARDAARDILMAVAKGCDPEEAATRTDDLTIGAVCD 107 Query: 77 EYRKSAHW--------GSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK 127 Y A + ++ S D I G + I Sbjct: 108 WYLDEAEAGRILGKRRRPIKASTLAMDRSRIDAHIKPLLGKRIINTLKLGDIEGAQADIA 167 Query: 128 HTPSS-----------------AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170 +S A + ++++ + + AVR + NP V R Sbjct: 168 AGKTSKARVGSRGGATTGGEGVAARTMSTLHSILEHAVRLGKITSNPAKGVRRLASTPRD 227 Query: 171 IR-----PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225 R + E A F L +GLR + L + SI+ Sbjct: 228 RRLSRAEIEKLGKAMRIAEQDGEHPTGLAAIRFFLMTGLRRMEGLALERAWLHDEEGSIR 287 Query: 226 TQKTGTIITVELP-DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-N 283 T + + + LL P FF D + + A + + Sbjct: 288 FPDTKSGAQTRVIGRAAVDLLLAQPQAGSRFFFPADWGEGHFVGIVRVLDRLCAMARLED 347 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 + H +R A+++ D G + + A G + Y + +RL Sbjct: 348 VTPHTLRHTFASVAGDLGFSELTIAALLGHAARGVTQRYIHIDEALRLAADRVA 401 >gi|115374695|ref|ZP_01461972.1| putative bacteriophage integrase [Stigmatella aurantiaca DW4/3-1] gi|310822738|ref|YP_003955096.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1] gi|115368266|gb|EAU67224.1| putative bacteriophage integrase [Stigmatella aurantiaca DW4/3-1] gi|309395810|gb|ADO73269.1| Phage integrase family protein [Stigmatella aurantiaca DW4/3-1] Length = 406 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 48/363 (13%), Positives = 92/363 (25%), Gaps = 50/363 (13%) Query: 25 FRKGHGRRIRLPYPH---ESTFIPAYMSALTGSTPKR--EYINSPRKKPTTLKWLISEYR 79 F GR+ R+ Y L + NS + TL + Sbjct: 25 FHHPDGRQQRVVKFSPVQTRRGAEQYERELRAALLNGTFGKENSSEENRVTLAQFAPRFL 84 Query: 80 KSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138 + + +S ++ + ++ G I I + S+A Sbjct: 85 TYSENNN-KHSSVVTKRQLLEDHLLPFFGHMALSAIGPAEIEDFKAIMRKKKSAARARKE 143 Query: 139 S------------------MRVLFKWAVRQEYVAINPCLSVERPKRKT-------EGIRP 173 + ++ + + P+ Sbjct: 144 APTKAALLKRGDVEPKSLSLKTINNVLSALSKLLALAEEQRVIPQAPRVRLFGKLPKPTF 203 Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-----------NNIF 222 + + + + R L +GLR + L Sbjct: 204 DFLTFGEAERLIDAAEPEWRTLLLVALKTGLRQGELIGLQWSDLDLTQGRLNVRRTVWRG 263 Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPI-GKETFFINNDKQKMNATQFSIWFKAKATKAG 281 K G TV+LP + L F D Q + A + + + +AG Sbjct: 264 VTDLPKGGRERTVDLPASAVDALKAHRHLRGRFVFCQEDGQPLTAGKMAQPLRRALHRAG 323 Query: 282 VNK-----SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKN 335 +++ H +R A+ A G + G T++ E Y + D R + Sbjct: 324 ISREEGRIGWHDLRHTYASHLAMRGIPLKVIQELMGHVTIEMTERYAHLSPDTRREAVGV 383 Query: 336 SRR 338 R Sbjct: 384 LDR 386 >gi|92116456|ref|YP_576185.1| phage integrase [Nitrobacter hamburgensis X14] gi|91799350|gb|ABE61725.1| phage integrase [Nitrobacter hamburgensis X14] Length = 289 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 31/267 (11%), Positives = 73/267 (27%), Gaps = 17/267 (6%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS-- 131 L + A ++ + + + +R + Sbjct: 9 LRQRMIEDMTIRKFAPKTQHDYLQRVKNFAVYL-RRSPDTASAEDVRRYQLHLTASGVGV 67 Query: 132 -SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 +A Q ++++R FK + + + + ++ + E++ Sbjct: 68 PTANQTVSTLRFFFKVTLGRADLVERTA----FVREPSKLPVVLSPEEVACLLDAV-PAL 122 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--ITVELPDGFMKLLAMT 248 + + A +GLR S+ V ++ + I+ ++ V L ++LL Sbjct: 123 KYKAALSVAYGAGLRVSEVVALKVGNIDSKRMIIRVEQGKGREYRYVMLSPHLLELLRAW 182 Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKA------GVNKSAHGVRKFSATISADAGA 302 + + A G S H +R AT + Sbjct: 183 YKAARPQGWLFPGRDRVRQMTTRQLNRACHAAADMAEIGKPVSMHTLRHSFATHLLEQNI 242 Query: 303 TAHELMATYGWKTVDQAETYTKGADRI 329 + G +D Y + A + Sbjct: 243 DIRVIQVLLGHAKLDTTALYARVATKA 269 >gi|45673|emb|CAA31355.1| unnamed protein product [Plasmid pLMO20] Length = 337 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 35/303 (11%), Positives = 83/303 (27%), Gaps = 52/303 (17%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132 ++ + R+ + ++ + ++ + IR G + + + + + + S Sbjct: 16 VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 + L + + + + RP+ T +++ + + Sbjct: 76 VSTHRQPLPALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230 RL + L +G+R S+ + V+ L + +I ++ Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193 Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265 + + A + + M Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253 Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 F FK +AG+ K + H +R AT +G + G V YT Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313 Query: 324 KGA 326 Sbjct: 314 HVL 316 >gi|241992627|gb|ACS73673.1| IntI1 [uncultured bacterium] Length = 315 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 35/302 (11%), Positives = 84/302 (27%), Gaps = 52/302 (17%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132 ++ + R+ + ++ + ++ + IR G + + + + + + S Sbjct: 16 VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 ++ L + + + + RP+ T +++ + + Sbjct: 76 VSTHRQALAALLFFYGKVLCADLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230 RL + L +G+R S+ + V+ L + +I ++ Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193 Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265 + + A + + M Sbjct: 194 RARAWWLKDQAEGRSGVALPDTLERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253 Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 F FK +AG+ K + H +R AT +G + G V YT Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313 Query: 324 KG 325 Sbjct: 314 HV 315 >gi|210610698|ref|ZP_03288579.1| hypothetical protein CLONEX_00769 [Clostridium nexile DSM 1787] gi|210152331|gb|EEA83337.1| hypothetical protein CLONEX_00769 [Clostridium nexile DSM 1787] Length = 328 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 32/276 (11%), Positives = 79/276 (28%), Gaps = 15/276 (5%) Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119 +P T + + + + + + + + Q++ G I T+ + Sbjct: 40 TRKDEENEPET-QDYLEIFLSAKRIEGCSEKTLTYYRNTIHQMMESIG-KTVCTIETEDL 97 Query: 120 R----SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 R ++ + + F W ++Y+ +P + R K + +T Sbjct: 98 RTYLSRYQAEKESSKVTIDNIRRIFSSFFAWLEDEDYIIKSPVRRIHRIKSASVIKETYT 157 Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIIT 234 E ++ + + + + L +G+R + + Sbjct: 158 DEQLETMRD-NCDNLRDLALIDILASTGMRVGELVLLNRDDISFEERECVVFGKGDKERM 216 Query: 235 VELPDGFMKLLAMTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAH 287 V L + ++M + + + + K H Sbjct: 217 VYFDARTKLHLQNYLDSRTDNENALFVSLKAPYKRMKIGGIEVRLREMGKRLNIEKVHPH 276 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 R+ AT++ D G +L G + +D Y Sbjct: 277 KFRRTLATVAIDKGMPIEQLQKLLGHQRIDTTLQYA 312 >gi|330997656|ref|ZP_08321501.1| site-specific recombinase, phage integrase family [Paraprevotella xylaniphila YIT 11841] gi|329570184|gb|EGG51924.1| site-specific recombinase, phage integrase family [Paraprevotella xylaniphila YIT 11841] Length = 409 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 39/300 (13%), Positives = 90/300 (30%), Gaps = 26/300 (8%) Query: 54 STPKREYINSPRKKPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKSG--- 107 +T +E ++ TL L + ++ + ++ ++ Sbjct: 93 ATAVKEAFQGSKETRMTLLKLFDRHIGEVRARVGIDVSHRTLPNYLYTRSRLADFVSSRF 152 Query: 108 ---DFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 D + ++ + IR E + + +L ++ + + A ++ + Sbjct: 153 KVSDLAFCQLNEQFIREFQEYVVIEKGLGVQTVRHYLAILKKICRIAFKEGHSDKFYFEH 212 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-----RLAFEFLLYSGLRCSDSCRAGVQ 215 + PK+K R +KED ++ + G +P R F F Y+G D Sbjct: 213 YKLPKQKETAPRALSKEDFEKIRDIELTGCRPEHSIVRDMFLFACYAGTSYVDVVAITPD 272 Query: 216 HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND---KQKMNATQFSIW 272 +L + K +KLL + + + + Sbjct: 273 NLSRDDSGALWLKY--RRGKNGQLSRVKLLPEAIDLIDKYRDDTRATLFPVIPYQALKWC 330 Query: 273 FKAKATKAGVNKSA--HGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + K G+ H R +T+ + G + G + + Y + + Sbjct: 331 LTSIKMKVGIKGRLSYHMGRHSFSTLMTLENGVPIETVSRMLGHADIRTTQVYARVTPKK 390 >gi|222151103|ref|YP_002560257.1| hypothetical protein MCCL_0854 [Macrococcus caseolyticus JCSC5402] gi|222120226|dbj|BAH17561.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 339 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 39/281 (13%), Positives = 86/281 (30%), Gaps = 32/281 (11%) Query: 79 RKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-YRKITTKHIRSGVESRKH--------- 128 + +L+ + I++ F + + D KIT K R + K+ Sbjct: 27 LEDKELQNLSRATIINYNKVFTSLSIFFDNIDDPFKITEKQAREYIRYLKNEHVHYKDKL 86 Query: 129 ---------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 S+ ++ + +++ V Y+ NP +++ K++ E I+ ED+ Sbjct: 87 HHKNEIRGLKASTINTYIKLCKSIYQTLVELNYIESNPFKAIKCLKKQNERIKTIPPEDI 146 Query: 180 QQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTII 233 + + + + A L + R + + + + K Sbjct: 147 NKLLNSLDKSYYTDFRMFTAIHVFLDTFGRIDEVLNIKITDIDFDKRSIYFPNTKNNDGR 206 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDK-----QKMNATQFSIWFKAKATKAGVN--KSA 286 V KLL + + + K F K + + + Sbjct: 207 YVMFSLKTKKLLVELIDEMKDYNNDFVFLAVDGGKFTNQAFRNQLKKYCKEYNIKTNITP 266 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 H R ++ + + G L G K + E Y ++ Sbjct: 267 HMFRHTASMLFLENGGNIRVLQKILGHKKLATTEIYAHVSE 307 >gi|61398373|gb|AAX46051.1| integrase [Pseudomonas aeruginosa] Length = 337 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 35/303 (11%), Positives = 84/303 (27%), Gaps = 52/303 (17%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132 ++ + R+ + ++ + ++ + IR G + + + + + + S Sbjct: 16 VLDQLRERIRYLHYSLPTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSCLANERKVS 75 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 ++ L + + + + RP+ T +++ + + Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230 RL + L +G+R S+ + V+ L + +I ++ Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193 Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265 + + A + + M Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253 Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 F FK +AG+ K + H +R AT +G + G V YT Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313 Query: 324 KGA 326 Sbjct: 314 HVL 316 >gi|56552826|ref|YP_163665.1| integrase family protein [Zymomonas mobilis subsp. mobilis ZM4] gi|56544400|gb|AAV90554.1| integrase family protein [Zymomonas mobilis subsp. mobilis ZM4] Length = 399 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 56/365 (15%), Positives = 98/365 (26%), Gaps = 35/365 (9%) Query: 9 PFVTKERTRHGKI----IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE----- 59 P + T G+ Y G R+ L E T A A R+ Sbjct: 29 PGFLCKITPAGRKVFMLQYRTNAGERRKPALGQYGELTVDQARTMAQEWLAEVRKGGDPS 88 Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKH 118 + +K T+K + + +++ ++ D+ II G + + Sbjct: 89 AAKNAARKAPTMKEFCHTFIEDYSKQRNKPSTQRGYQGVIDRCIIPIMGRMKVQDVKRPD 148 Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + ++ + + A + +R +F A P +D Sbjct: 149 VAALMKKLAYKQAEANRTFGVLRKMFNLAEVWGLRPDGTNPCRHVPMYPPGKETRLIVDD 208 Query: 179 MQQFKSFWSEGSQPR--------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230 E + LA R S+ C + + + Sbjct: 209 ELVRIFRQLEHLEAVGLENYVIPLAIRLQFEFAARRSEICPLEWDWIDLEKRRVVWPDSK 268 Query: 231 TIITVELPDGFMKLL-----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 T + L N+ Q M + + AGV Sbjct: 269 TGGISKPMSEEAYRLLSTAPRREGCPYVLPSPNDPTQHMTHGEHYGGWTRVLKAAGVPHV 328 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-----------IRLGI 333 HG+R + T A++G M G KTV Y D+ RL I Sbjct: 329 GTHGIRHRATTDIANSGVPTKVGMKLTGHKTVAMFMHYVHTEDKPVRDAAELVANRRLAI 388 Query: 334 KNSRR 338 + R Sbjct: 389 TGASR 393 >gi|146296464|ref|YP_001180235.1| phage integrase family protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410040|gb|ABP67044.1| phage integrase family protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 286 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 36/270 (13%), Positives = 87/270 (32%), Gaps = 23/270 (8%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRSGVESR 126 EY K+ + N+ S+ + +R D + + +S + + Sbjct: 5 FEEYLKTQDFT---ENTIKSYTKDVELFMRWYIDTTGQEFLPENLTEFDLVEYKSYLLRQ 61 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG--IRPWTKEDMQQFKS 184 PS+ + + S+R + + + + + +++ K T K+D+ +F+ Sbjct: 62 NLRPSTVNRSIISLRKFVHFLLDRGLLKKDISTRLKQVKDTTRNLSPVVLDKKDIYKFRR 121 Query: 185 FWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242 + + R L +G+R S++ ++ ++ + K + G + Sbjct: 122 TVHQFGKARDIAFVELLLNTGMRISEAINLKLEDIEISERKGKVKIWGKGRSYREVPLNS 181 Query: 243 KLLAMTPIGKETFFINNDKQ--------KMNATQFSIWFKAKATKAGVNKSAHGVRKFSA 294 + + + A A V+ H +R F A Sbjct: 182 DARKYLSEYLKKRPYSETNYLFVTSTGKPLTRNTAYKIILKYAKLASVDLHPHMLRHFFA 241 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324 D G +++ G + ++ Y K Sbjct: 242 QTLIDKGLNLYDVQQLLGHQRIETTLRYKK 271 >gi|313148282|ref|ZP_07810475.1| phage integrase [Bacteroides fragilis 3_1_12] gi|313137049|gb|EFR54409.1| phage integrase [Bacteroides fragilis 3_1_12] Length = 413 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 36/280 (12%), Positives = 81/280 (28%), Gaps = 25/280 (8%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK----HIRSGVES 125 K + EY + + S S +++ IT +I + Sbjct: 117 FKGFVMEYLDWLKQCKGYSPRTIESRYSQLKTMMQTLKVDSLEDITPSILDNYICKRHDE 176 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG------IRPWTKEDM 179 + +T +R FK+A + S++ P+ ++ + Sbjct: 177 DGCNRRTIAATVTILRGFFKYAEEKGLCNPGLVYSLKAPRVYAHENLPSFVPYNIVQQIL 236 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---- 235 Q K G + L GLRCS+ ++ + ++ ++ Sbjct: 237 QSKKDTAGIGVRDYAILLLLSVYGLRCSEVTNMKLKDIDWRNETLYLRRAKNCRPQVLPL 296 Query: 236 --ELPDGFMKLLAMTPIG-----KETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--- 285 + + ++ + ++++ + K + G+ Sbjct: 297 LPIVGNAIVRYIKEVRFNKSKKEYLFLCKRAPHEQLSTSTIYNLVKKELKDKGLELRHYG 356 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 H +R AT + G + E+ G +D Y K Sbjct: 357 PHSLRHTCATHLINTGHSLKEIADLLGHVGLDTTRIYAKV 396 >gi|312878202|ref|ZP_07738129.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A] gi|311795015|gb|EFR11417.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A] Length = 324 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 39/287 (13%), Positives = 87/287 (30%), Gaps = 20/287 (6%) Query: 57 KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD----YR 112 K+E + ++ I ++ SL+ + ++ + G + Sbjct: 4 KKECRFKRVVEKKKIEEAIQDFLLDCEVRSLSKWTIDFYKRTLKPFV-FFGKQNSVEYVN 62 Query: 113 KITTKHIRSGVESRKHT---PSSAIQFLTSMRVLFKWAVRQEY----VAINPCLSVERPK 165 IT + + + K + ++ +L +R + ++E+ + IN E+ K Sbjct: 63 DITKEMVNKYIAHLKDSIENTTTINTYLRGLRTFLNFLKKEEFLENEIEINMLKEEEKIK 122 Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------N 219 K + + +LL +G R S V + Sbjct: 123 ETYSDEDIKKLLKKPDLKKCSFAEYRNWVLVNYLLETGNRLSSVINIKVSDVDLENGIVT 182 Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF-FINNDKQKMNATQFSIWFKAKAT 278 S + I+ + + +A + ++ + F + +M + Sbjct: 183 IKHSKNKSHYFSPISNTMCKILREYIATWNLKEDDYLFPSQSGAQMTKNTIEKAIRDYNK 242 Query: 279 KAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 K GV + H R A +L G KT++ Y + Sbjct: 243 KRGVKLTSIHAFRHTFAKNYIKTNGNPFKLKQLLGHKTLEITNRYVR 289 >gi|241992614|gb|ACS73664.1| IntI1 [uncultured bacterium] Length = 315 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 35/302 (11%), Positives = 83/302 (27%), Gaps = 52/302 (17%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132 ++ + R+ + ++ + ++ IR G + + + + + + S Sbjct: 16 VLDQLRERIRYLHYSLRTEQAYVHRVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 ++ L + + + + RP+ T +++ + + Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230 RL + L +G+R S+ + V+ L + +I ++ Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193 Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265 + + A + + M Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253 Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 F FK +AG+ K + H +R AT +G + G V YT Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313 Query: 324 KG 325 Sbjct: 314 HV 315 >gi|37525317|ref|NP_928661.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens subsp. laumondii TTO1] gi|37527576|ref|NP_930920.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784744|emb|CAE13652.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787011|emb|CAE16085.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 376 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 47/304 (15%), Positives = 92/304 (30%), Gaps = 32/304 (10%) Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIR 120 P P +L L+ + + + + + I + D IT + Sbjct: 24 PAHDPKSLYALLLRFVAWRQERNWSETTLKVQTHHTYHFILWATDRGLYYAADITRPILE 83 Query: 121 SGVESRKH---------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 + + L ++V FKW +Q + NP +E P+ + Sbjct: 84 RYQRYLYQYRKTNGEPLSIRTQRTQLQPLQVWFKWLTKQNLILANPAADIELPREEKRLP 143 Query: 172 RPWTKEDMQQFK-----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSI 224 R D + +G++ R E L +G+R S++ R + + +I Sbjct: 144 RYILSIDEIEHILSLPDPNTLQGARDRALMELLWSTGIRRSEAARLDIYSIDGSRKTVTI 203 Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM-----------NATQFSIWF 273 + K + L + + L + + + Sbjct: 204 RQGKGNKDRVLPLGERALNWLQFYQQQVRPQLLVTPDIQSLFVAMDGLDGLQPNGITNAV 263 Query: 274 KAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 AG+ K H R AT + GA + A G +V+ + YT+ + R Sbjct: 264 SGYIRAAGIEKKGACHLFRHAMATQMLENGADLRWIQAMLGHASVESTQVYTQVSIRALQ 323 Query: 332 GIKN 335 + Sbjct: 324 AVHA 327 >gi|259909522|ref|YP_002649878.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96] gi|224965144|emb|CAX56676.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96] Length = 345 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 47/314 (14%), Positives = 92/314 (29%), Gaps = 35/314 (11%) Query: 55 TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRI-----SFESYFDQIIRKSGDF 109 P P +L L+ + K + + + + ++ G Sbjct: 15 DDIYRQPVGPAHDPKSLYALLLRFVKWRRERNWSETTLKVQTHHGYRFIC--WAQERGIH 72 Query: 110 DYRKITTKHIRSGVESRKH---------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 +T + +P + L ++V F+W +Q + NP Sbjct: 73 HAADVTRPVLERWQRHLYRYRKGNGEPLSPRTQRTALQPLQVWFRWLAKQNLILANPAAD 132 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSE-----GSQPRLAFEFLLYSGLRCSDSCRAGVQ 215 +E P+ + R + + + G + R E L +G+R + R Sbjct: 133 LELPRLEKHLPRTILSVEQVEDIVNLCDLNTLQGMRDRALLELLWSTGIRRGEVARLETW 192 Query: 216 --HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--------- 264 I +I K + + + + L + K Sbjct: 193 SADFSRKILTIVQGKGKQDRVIPVGERALWWLRHYLHEVRPEIVAVAGCKALFVAMDGVA 252 Query: 265 --NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321 A + AG+ K S H R AT + GA + A G ++V+ + Sbjct: 253 GLTANGITHAVVPYLRAAGIEKGSCHLFRHAMATQMLENGADLRWIQAMLGHRSVESTQI 312 Query: 322 YTKGADRIRLGIKN 335 YT+ + R + Sbjct: 313 YTQVSIRALQAVHA 326 >gi|154488695|ref|ZP_02029544.1| hypothetical protein BIFADO_02002 [Bifidobacterium adolescentis L2-32] gi|154082832|gb|EDN81877.1| hypothetical protein BIFADO_02002 [Bifidobacterium adolescentis L2-32] Length = 323 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 32/270 (11%), Positives = 80/270 (29%), Gaps = 14/270 (5%) Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 + P T+ I + + + S + + + + ITT IR + Sbjct: 40 RGPETMTECIDLFLAAKKLEGCSERSLRYYATTLSRFATEI-SRPAHDITTDDIRDYLTR 98 Query: 126 RKHTPS----SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + + F W ++Y+ +P +++ + ++ E ++Q Sbjct: 99 YSRDGRVGKTTIDNIRRVISSCFSWLEEEDYIYKSPVRRIKKIRTSRMLKPVYSDESLEQ 158 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--TGTIITVELPD 239 + E ++ + L +G+R + + + + + Sbjct: 159 LRDACKE-TRDLAMIDLLTSTGIRVGELVQLNRRDIDFDARECVVHGKGDKERRVYFDAR 217 Query: 240 GFMKLLAMTPIGKETFFI-----NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293 LL + + +++ + + +GV H R+ Sbjct: 218 AKTHLLVYLEQRMDDEPALFVSLHRPFKRLEISGVEARLRKLGDDSGVKHVHPHKFRRTL 277 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYT 323 AT + D G ++ G +D Y Sbjct: 278 ATKAIDKGMPIEQVQVLLGHSKIDTTLCYA 307 >gi|124514903|gb|EAY56414.1| putative phage integrase [Leptospirillum rubarum] Length = 343 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 46/345 (13%), Positives = 104/345 (30%), Gaps = 29/345 (8%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 R R G +K +I A+ + ++ + TTL Sbjct: 5 RKRSGSWQALVKKKGFGQI-ARTFDTKAAAEAWAKVTESEMTRGVFVTRKESENTTLDEA 63 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSS 132 + Y + +S + I K I + R + ++ Sbjct: 64 LGRYEREVTPSKKGRVQELSRLRILKN--SFLANRSLASIQGKDIARYRDDRLKDVSEAT 121 Query: 133 AIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 + LT + +FK A+++ +A NP ++ P + E SE Sbjct: 122 LRRELTILSQVFKVAMKEWGMAGLANPVDAIRLPSGRGEVRDRRLLPGELDRICESSESP 181 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLL--- 245 + +G+R ++ + + ++ K G V L +++L Sbjct: 182 ILPSIARLAIETGMRQAEIAGMTWELVDLKKRTVTLLDTKNGEKRIVPLSMEAVRILSGL 241 Query: 246 ---AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--------KSAHGVRKFSA 294 + + + ++ ++ K G + + H +R + Sbjct: 242 PRRIDEKVWGVQSHAVSVAWRRAVSRARAVYEKKCQAKGEDPDPSFLADLTFHDLRHEAT 301 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 + + G ++ A G KT+ + YT L ++ ++ Sbjct: 302 SRFFEKGFNPMQVSAITGHKTLQMLKRYTH------LKAEDLAKL 340 >gi|298369050|ref|ZP_06980368.1| xylulose-5-phosphate/fructose-6-phosphate phosphoketolase [Neisseria sp. oral taxon 014 str. F0314] gi|298283053|gb|EFI24540.1| xylulose-5-phosphate/fructose-6-phosphate phosphoketolase [Neisseria sp. oral taxon 014 str. F0314] Length = 356 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 53/317 (16%), Positives = 97/317 (30%), Gaps = 17/317 (5%) Query: 17 RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76 R+ R GRRIR A ++ + K + Sbjct: 6 RNDVYYVDIRTKGGRRIR-QSAGTKNKHEAQRLHDKLKYELWQHEHFDEKPKRVWEEAAV 64 Query: 77 EYRKSAHWGSLAVNSRISFESYFDQI--IRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134 + K S ++ + + I+ I V+ + S+ Sbjct: 65 RWIKEKSEK-------KSIRDDISRLRMLPQLRGVFLHHISRDFIMDVVDRLPCSNSTKN 117 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194 ++L +R + A + N + K++ W K + + + R Sbjct: 118 RYLALIRSILYKAQNEWGWIDN--APKLKLKKEAAKRIRWLKPEEAERLINALPDNHWRA 175 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQ----NNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250 F +GLR + + + K+G I V L D +++L+ Sbjct: 176 IAIFSFCTGLRQRNVFGLRWEQVDLDRKTAWIYPDETKSGRPIGVPLNDVAVRVLSERMG 235 Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMA 309 ET+ N + K + S +K +AG+ N H +R A+ G L Sbjct: 236 IHETYVFTNRENKPVSALSSKMWKRTLERAGISNFRWHDIRHTWASWLVQRGVPLVALKE 295 Query: 310 TYGWKTVDQAETYTKGA 326 GW+ +D Y A Sbjct: 296 MGGWERLDMVMRYAHLA 312 >gi|254441509|ref|ZP_05055002.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 307] gi|198251587|gb|EDY75902.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 307] Length = 366 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 44/330 (13%), Positives = 91/330 (27%), Gaps = 34/330 (10%) Query: 30 GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAV 89 GR A+ R+ P +K +I Y LA Sbjct: 4 GRWPEWSVTAARERAKELRRAIDEGRDPLAVREDFREAPQ-VKDMIDRYIAEH-LPKLAK 61 Query: 90 NSRISFESYFDQII-RKSGDFDYRKITTKHIRSGVE----------------------SR 126 N+ S +++ G+ +IT + ++ Sbjct: 62 NNAGDQVSMLRKMLEPAWGNKLVTEITKSDVARFLDFVAEGRPRPSKAKPNNRARKLQGH 121 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS-VERPKRKTEGIRPWTKEDMQQFKSF 185 K TP A + +R +F A+ E+ A NP R ++ E + Sbjct: 122 KPTPIRANRMGEVLRKMFTLAMEWEWRADNPVQGFHRRIEQARERFLGPEELTRIAVVLD 181 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKL 244 +E + + +G R + A + + + K T + ++ Sbjct: 182 NAEDQRGAAIIRMCMLTGARVGEVRTARFEQFNLDYVIWSKPAATTKQRKIHRVPISQEV 241 Query: 245 LAMTPIGKETFFINNDKQKMNA------TQFSIWFKAKATKAGVN-KSAHGVRKFSATIS 297 + + + N + ++ +A + H +R A++ Sbjct: 242 VTIVRKRQMVVPHGNPWLFPGETVGQPVREIRRFWARVQKEADLPDVRIHDLRHTFASLL 301 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGAD 327 GA+ + G + + Y D Sbjct: 302 VSGGASLEMIGRLLGHSQMQTTQRYAHLMD 331 >gi|327460988|gb|EGF07321.1| phage integrase family integrase/recombinase [Streptococcus sanguinis SK1057] Length = 328 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 34/262 (12%), Positives = 76/262 (29%), Gaps = 14/262 (5%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESRKHT 129 L+ + + + S ++ + + R +TT +R + RK + Sbjct: 53 LLELFISAKRIEGCSEKSLKYYKIVIENMFTSL-KTAIRDLTTSDLRTYLAHYQQERKSS 111 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + F W ++Y+ +P + + K ++ E ++ + E Sbjct: 112 KVTIDNMRRIFSSFFGWLEDEDYILKSPVRRIHKIKTDKTIKETFSDEGLELLRDACHE- 170 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKLLAMT 248 + + L +G+R + + + K + V L Sbjct: 171 IRDLAMIDLLASTGMRVGELVGLNREDINFYERECLVFGKGNSERIVYFDARTKIHLINY 230 Query: 249 PIGKETFFINNDKQKMNAT------QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301 ++ + + KA +NK H R+ AT + D G Sbjct: 231 LDSRQDDNPALFVSLSSPYNRLLIGGVETRLRQIGEKADLNKVHPHKFRRTLATRAIDKG 290 Query: 302 ATAHELMATYGWKTVDQAETYT 323 ++ G +D Y Sbjct: 291 MPIEQVQHLLGHVKIDTTMHYA 312 >gi|167621189|ref|ZP_02389820.1| Fels-2 prophage protein [Burkholderia thailandensis Bt4] Length = 317 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 35/289 (12%), Positives = 80/289 (27%), Gaps = 18/289 (6%) Query: 46 AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK 105 A+ + + + PR+ + L+ + + L+ + Sbjct: 2 AWERYIRAKVQETPEWSPPRRDERFVVELVEIWYRHHGAA-LSAG--ADTRRRLLAMCEA 58 Query: 106 SGDFDYRKITTKHIRSGVESRKHTPSSAIQF---LTSMRVLFKWAVRQ-EYVAINPCLSV 161 G+ + R +A +R +F R + NP V Sbjct: 59 MGNPRAESFSADLFAEYRTRRLEAGVTANNMNREHAYLRAMFNELGRLGHWTKENPLRHV 118 Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQN 219 K + + + ++ + +EG L + L +G R ++ ++ Sbjct: 119 RAFKVQESELTYLVPQQIRGLLAALAEGRNVHVLLISKVCLATGARWGEAEGLRRTQIKG 178 Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279 K+ +V + D + L + ++ F+ + Sbjct: 179 GQIQFVKTKSSKARSVPITDALERELIAHFGNYGDSDTGRLFEASSS-----AFREAVER 233 Query: 280 AGV----NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 AG+ + H +R A+ G L G ++ Y Sbjct: 234 AGLVLPDGQLTHVLRHTFASHFMMNGGNILALQRALGHHSLTMTMRYAH 282 >gi|325678716|ref|ZP_08158324.1| site-specific recombinase, phage integrase family [Ruminococcus albus 8] gi|324109580|gb|EGC03788.1| site-specific recombinase, phage integrase family [Ruminococcus albus 8] Length = 369 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 45/312 (14%), Positives = 103/312 (33%), Gaps = 41/312 (13%) Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSG 122 P P T+ L + S ++ + S+ FD I + G++ +++ + Sbjct: 56 PVDDPMTVSELFDAWIFSRK-NNIKQTTYASYCYMFDHYIRCRLGEYRIDRLSAFILERV 114 Query: 123 VESR---------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 + + + + ++ LFK+ + + + +V PK ++ I+ Sbjct: 115 LSELIECGGKNGHQLSSKTVKDITVMLKSLFKYGEVEYSLPDSM-KNVTPPKCESAEIQV 173 Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233 + ++++ + + + + L LY+GLR + C + +KT T I Sbjct: 174 FKEQEIVKMRQYAIHSNISDLGILLCLYTGLRIGEICALQWGDIDLIDNVFHVRKTLTRI 233 Query: 234 TVELPDGFMKLLAMT--------------------------PIGKETFFINNDKQKMNAT 267 ++ + + +F+ ++ Sbjct: 234 PNPDGSKPKTIVIIDTPKSKRLVRDIPIPTFMLKRLTEVKKHQQNDDYFLTGTQKYTEHR 293 Query: 268 QFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKG 325 +S +K+ + GV K+ H +R AT G + G +V E Y Sbjct: 294 SYSSRYKSFLKRIGVPYKNFHVLRHTFATECIRIGIDVKTVSELLGHSSVKITLERYVHS 353 Query: 326 -ADRIRLGIKNS 336 D R ++ Sbjct: 354 DMDMKRQQLEKL 365 >gi|9635493|ref|NP_059584.1| Int [Enterobacteria phage P22] gi|168240064|ref|ZP_02664996.1| site-specific recombinase, phage integrase family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194450412|ref|YP_002044308.1| site-specific recombinase, phage integrase family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|138565|sp|P04890|VINT_BPP22 RecName: Full=Integrase gi|21914435|gb|AAM81400.1|AF527608_22 Int protein [Salmonella phage P22-pbi] gi|15642|emb|CAA27685.1| unnamed protein product [Enterobacteria phage P22] gi|8439580|gb|AAF75002.1| integrase [Enterobacteria phage P22] gi|16209133|gb|AAL09889.1| integrase [CRIM helper plasmid pAH130] gi|16209140|gb|AAL09894.1| integrase [CRIM helper plasmid pAH131] gi|28394284|tpg|DAA00998.1| TPA_inf: integrase [Enterobacteria phage P22] gi|157734732|dbj|BAF80738.1| integrase [Enterobacteria phage P22] gi|169658864|dbj|BAG12621.1| integrase [Enterobacteria phage P22] gi|194408716|gb|ACF68935.1| site-specific recombinase, phage integrase family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205339757|gb|EDZ26521.1| site-specific recombinase, phage integrase family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 387 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 50/375 (13%), Positives = 105/375 (28%), Gaps = 60/375 (16%) Query: 17 RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76 R F +G+R + A T + Sbjct: 6 RGETWYASFTLPNGKRFKQSL-GTKDKRQATELHDKLKAEAWRVSKLGETPDMTFEGACV 64 Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP------ 130 + + S +S ++ + IT I S ++ + Sbjct: 65 RWLEEKAHKK----SLDDDKSRIGFWLQHFAGMQLKDITETKIYSAIQKITNRRHEENWK 120 Query: 131 -----------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167 ++ L+ ++ L + A +E+ ++ ++ P+ K Sbjct: 121 LMDEACRKNGKQPPVFKPKPAAVATKATHLSFIKALLR-AAEREWKMLDKAPIIKVPQPK 179 Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFS 223 + IR + ++ E + EF L +GLR S+ Q + Sbjct: 180 NKRIRWLEPHEAKRLIDECQE--PLKSVVEFALSTGLRRSNIINLEWQQIDMQRKVAWIH 237 Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------------FSI 271 + K+ I V L D ++L + + + Sbjct: 238 PEQSKSNHAIGVALNDTACRVLKKQIGNHHKWVFVYKESSTKPDGTKSPVVRKMRYDANT 297 Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 ++A +AG+ + H +R A+ AG L GW++++ Y Sbjct: 298 AWRAALKRAGIEDFRFHDLRHTWASWLVQAGVPISVLQEMGGWESIEMVRRYAH------ 351 Query: 331 LGIKNSRRISSVVDS 345 L + + +DS Sbjct: 352 LAPNHLTEHARQIDS 366 >gi|323181030|gb|EFZ66568.1| integrase domain protein [Escherichia coli 1180] Length = 233 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 31/217 (14%), Positives = 65/217 (29%), Gaps = 13/217 (5%) Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFK-WAVRQEYVAINPCLSVERPKRKTE 169 ++ I PS+ + + ++ +F ++ NP ++ K Sbjct: 14 LTELRVSRIEQ-----GIQPSTINREIGALSAMFTALISSGHFLNDNPVQGLKGMKVNER 68 Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229 + +K + Q +E RLA E LL +G R + + + + + K Sbjct: 69 EMGYLSKSECVQLLDALAENPDERLAVEILLSTGARWGEVAALEQRRVLHCRITFSKTKN 128 Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGV 289 TV + + + + ++ + K A ++ H + Sbjct: 129 SKNRTVPISESLFEKIKKRGGKLVFPTLD-------YSLVRDVIKTVAPDVPDGQAVHAL 181 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 R A+ G L G + Y A Sbjct: 182 RHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHLA 218 >gi|218902477|ref|YP_002450311.1| integrase/recombinase [Bacillus cereus AH820] gi|218540144|gb|ACK92542.1| integrase/recombinase [Bacillus cereus AH820] Length = 306 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 34/281 (12%), Positives = 78/281 (27%), Gaps = 29/281 (10%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-------TKHIRSGV 123 L++ + E+++ + +L+ + + + ++ + + + ++R Sbjct: 3 LRFAMKEFQEEKEYNNLSHRTIEVYMATLNEFRNFCSELEIVDLRDIREVTVKSYLRYCK 62 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQF 182 ++R + + L +R+ F + +E + + +P ++ I +T +QQ Sbjct: 63 KTRGNGVVTCNSKLHHLRIFFNYWQNEEVMEHKDNPVRKLKPAKEDTKIEVFTDYHIQQM 122 Query: 183 KSFWSE---------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233 ++ G + LL +G+R + + + S+ Sbjct: 123 LRYYRRLKTRDKSFFGYRDHAIIVLLLSTGIRLGELVNIQWKDIDLVNRSVVLFGKARKQ 182 Query: 234 T------------VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 E K L P T Sbjct: 183 QSIPITDKLTKEICEWRIFVEKELGSIPQYLFTSREGKQLSPNAVKLIFQRLSKVMNFKD 242 Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 V S H R A G L + E Y Sbjct: 243 VRLSCHTFRHSFAHRCIMQGMDVFTLQKLLRHSNLRMTERY 283 >gi|71904526|ref|YP_281329.1| DNA integration/recombination/invertion protein [Streptococcus pyogenes phage 6180.4] gi|94991460|ref|YP_599560.1| DNA integration/recombination/inversion protein [Streptococcus phage 10270.5] gi|71803621|gb|AAX72974.1| DNA integration/recombination/invertion protein [Streptococcus pyogenes phage 6180.4] gi|94544968|gb|ABF35016.1| DNA integration/recombination/inversion protein [Streptococcus phage 10270.5] Length = 387 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 68/389 (17%), Positives = 124/389 (31%), Gaps = 57/389 (14%) Query: 10 FVTKERTRHGKIIYYFR--------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61 + + + ++G IIY G R + + AL Y Sbjct: 2 NIKEYKKKNGTIIYRTSVYLGVDQVTGKKARTTITASTKKGVKIKARDALNN-FAMNGYT 60 Query: 62 NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIR 120 + TT K L + + +S ++ NSR S E I+ GD K+TT I+ Sbjct: 61 VKEKPTVTTYKELTALWWESYK-NTIKPNSRQSMEGIVRLHILPAFGDCKLSKLTTPVIQ 119 Query: 121 SGVESR------KHTPSSAIQ-FLTSM-RVLFKWAVRQEYVAINPCLSVERPKRKT---E 169 V + A FL ++ R + ++ V + + NP V P+++ Sbjct: 120 QQVNKWANNANKGIKGAYANYSFLNNINRRILQYGVTMQVIEHNPARDVIIPRKQNNKEH 179 Query: 170 GIRPWTKEDMQQFKSF-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222 ++ ++ ++++QF ++ E + ++ LL +G R + + Sbjct: 180 KVKFFSNQELKQFLNYLDDLDLSSYENFFDYVLYKTLLATGCRIGEVLALEWSDIDLKKG 239 Query: 223 SIKTQKTGTI-------------ITVELPDGFMKLLAMTPIGKETFFIN------NDKQK 263 +IK KT +E+ + LL ++ + Sbjct: 240 TIKVSKTLNRYQETNTPKSKAGLRDIEIDRATVLLLKQYKNRQQVLSWDLGRSETIVFTP 299 Query: 264 MNATQ-----FSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD 317 + AGV S HG R ATI AG A +L G + Sbjct: 300 FTTKYAYACLLRKRLQKHFKAAGVPDISFHGFRHTHATIMLYAGIEAKDLQYRLGHSNIS 359 Query: 318 QA-ETYTKGADRIRLGIKNSRRISSVVDS 345 TY K + + + Sbjct: 360 MTLNTYVHAT--KEGAKKAVSIFETAISN 386 >gi|254303662|ref|ZP_04971020.1| possible bacteriophage integrase/recombinase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323854|gb|EDK89104.1| possible bacteriophage integrase/recombinase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 329 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 31/263 (11%), Positives = 84/263 (31%), Gaps = 14/263 (5%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS- 131 + + + H + S +++ + + +K D + ITT +R +++ + + Sbjct: 53 EYLEAFLSAKHVEGCSRKSLKYYKATIENLFKKI-DKSIKHITTNDLREYLDNYQKEGNA 111 Query: 132 ---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + F W ++++ +P + + K T ++ E M+ + + Sbjct: 112 SKITIDNIRRIFSSFFAWLEEEDHILKSPVRRIHKVKTGTVVKETYSDEAMEIMRD-NCK 170 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAM 247 + + L +G+R + + ++ + V L Sbjct: 171 SLRDLAIIDMLASTGMRVGELVKLNIEDIDFEGRECVVFGKGDKERKVYFDARTKIHLHN 230 Query: 248 TPIGKETFFIN------NDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADA 300 ++ +++ + I + K + H R+ AT + D Sbjct: 231 YLKTRDDDNSALFVSLLKPHKRLQISGVEIMLRQLGRKLNITKVHPHKFRRTLATKAIDK 290 Query: 301 GATAHELMATYGWKTVDQAETYT 323 G ++ G + +D Y Sbjct: 291 GMPIEQVQQLLGHQKIDTTLQYA 313 >gi|328947969|ref|YP_004365306.1| integrase family protein [Treponema succinifaciens DSM 2489] gi|328448293|gb|AEB14009.1| integrase family protein [Treponema succinifaciens DSM 2489] Length = 330 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 33/278 (11%), Positives = 83/278 (29%), Gaps = 15/278 (5%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH----T 129 L+ + + H + S ++S + I + +I T+ +R + + + Sbjct: 55 LLENFLAAKHVEGCSERSIKYYKSTLQKAITIL-HKPFNQIETEDLRKYLSDYQKINNAS 113 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + + F W + Y+ +P + + K ++ E + + Sbjct: 114 RMTIDNVRRILSTFFTWLEDENYILKSPVRRIHKIKTAKLIKETYSDETLVL-LRDNCKT 172 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT 248 ++ + L +G+R S+ Q + V L Sbjct: 173 TRDLAIIDMLASTGMRVSELVTLNKQDVDFVNRECVVFGKGSKERPVYFDARTKIHLLNY 232 Query: 249 PIGKETFFIN------NDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAG 301 ++ ++ + I + + H R+ AT + D G Sbjct: 233 LNERKDNNPALFVSLLEPHNRLQISGVEITLRKLGRSLNIQKVHPHKFRRTLATQAIDKG 292 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 ++ G + +D Y D+ + + + + I Sbjct: 293 MPIEQVQRLLGHQKIDTTMEYA-MVDQQNVKVSHKKYI 329 >gi|315221869|ref|ZP_07863781.1| site-specific recombinase, phage integrase family [Streptococcus anginosus F0211] gi|315189102|gb|EFU22805.1| site-specific recombinase, phage integrase family [Streptococcus anginosus F0211] Length = 387 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 43/371 (11%), Positives = 102/371 (27%), Gaps = 48/371 (12%) Query: 11 VTKERTRHGKIIYY------FRKGHGRRIRLPYPH-ESTFIPAYMSALTGSTPKREYINS 63 +T+ + ++G +Y + G++++ + A Sbjct: 9 ITEVKKKNGTTVYRASVYLGVDQVTGKKVKTSVTGRTRKEVKAKAQQAQIDFKLNGSTVK 68 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSG 122 + T + L + +S + + + + + +I G KIT +I+ Sbjct: 69 KEMQVRTYQELADLWLRSYQLT-VKPQTFRATQRMLYNHLIPAFGTMKPNKITVYYIQDF 127 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT------- 175 + + R + ++ V + + NP V PK + Sbjct: 128 INDLSKELVHYSVVHSINRRVLQYGVSLQLLPFNPARDVILPKVPKRENKVIKFIAPENI 187 Query: 176 ---KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 + M+ + + + LL +G R + + +I K Sbjct: 188 KALMDYMESLSNQKYGYYLDYVLYSVLLATGCRFGEVVALEWSDIDLKEKTISITKNYNR 247 Query: 233 I--------------------------TVELPDGFMKLLAMTPIGKETFFINNDKQKMNA 266 + + L + F K+ N Sbjct: 248 LLKLIGTPKSKAGVRVISIDKKTVNMLRLYKNRQRQLFLEVDSQVPTVVFATPTKEYQNM 307 Query: 267 TQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324 + + + + H R A++ +AG + EL G T+ Y+ Sbjct: 308 ATRQESLDRRLKEINCPRFTFHAFRHTHASLLLNAGISYKELQYRLGHATLATTMDIYSH 367 Query: 325 GA-DRIRLGIK 334 + D+ + + Sbjct: 368 LSKDKEKEAVS 378 >gi|198245719|ref|YP_002216060.1| integrase protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197940235|gb|ACH77568.1| integrase protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] Length = 329 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 60/329 (18%), Positives = 110/329 (33%), Gaps = 44/329 (13%) Query: 24 YFRKGHGRR--IRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS 81 Y+ K G I ++ AY + G RK T L ++ S Sbjct: 23 YYWKPGGSTENIAPADATKAEVWVAYEKKVEG-----------RKNRITFIQLWRKFLAS 71 Query: 82 AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS-SAIQFLTSM 140 A + LA ++ + ++ I+ GD + + I +HIR +++R A +SM Sbjct: 72 ADYADLAPRTQKDYLAHEKYILAVFGDAEAKAIKPEHIRRYMDARGQKSRVQANHEHSSM 131 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200 +F+W+ ++ YV NPC+ V++ + D + + + R A E Sbjct: 132 SRVFRWSYQRGYVPGNPCVGVDKFPKPQRDRY---ITDEEYRAIYNNATPAVRAAMEIAY 188 Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL--LAMTPIGKETFFIN 258 R SD + + I+ KTG D + + Sbjct: 189 LCAARVSDVLKMNWNQILEKGIFIQQGKTGVKQIKSWTDRLRDAVEICREWGEEGPVIRT 248 Query: 259 NDKQKMNATQFSIWFKAKATKAG------VNKSAHGVRKFSATISADAGATAHE-----L 307 ++ + F+ ++ AG ++ + H + G + +E Sbjct: 249 MYGERYSYKGFNEAWRKARKAAGDDLGRPLDCTFHDL--------KAKGISDYEGTAKDK 300 Query: 308 MATYGWKTVDQAETYTKGA------DRIR 330 G KT Q Y + DR R Sbjct: 301 QKYSGHKTESQVLVYDRKVKMSPTLDRKR 329 >gi|315656318|ref|ZP_07909209.1| phage integrase [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315493320|gb|EFU82920.1| phage integrase [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 358 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 44/358 (12%), Positives = 104/358 (29%), Gaps = 40/358 (11%) Query: 14 ERTR-HGKII--YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 + + G +Y+ G++++ T A + T Sbjct: 4 YKDKAKGTWYASFYYEDWTGKKVKKMKRGFPTKREAL------EWERTFLQQQTADLEMT 57 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR--- 126 + ++ Y + N+ + E +++ G I +K + + Sbjct: 58 FENFVAVYVADMKGR-IKENTWGTKEHILYKKLVPYFGKRKMCDIHSKEVIAWQNEMLGY 116 Query: 127 ------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDM 179 ++P + +F AVR + +NP + + WTK + Sbjct: 117 RDKNGKPYSPVYLKTLHNQLSAVFNHAVRHYNLKVNPAAQAGNMGKPKGREMLFWTKAEY 176 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------- 232 +F + AFE L + G+R + ++ K+ Sbjct: 177 LKFAEAMMDKPLSYYAFEMLYWCGVREGELLALTPGDFDFEKQTVTISKSYQRIKGKDVI 236 Query: 233 ---------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 +++P + + + + + A +AGV Sbjct: 237 TDPKTPKSNRVIQMPAFLCEEMRDYIKSLYGVKPTDRIFTVTKSYLHREMDRGAKEAGVK 296 Query: 284 K-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 + H +R ++ D G TA + G +++D Y + + + ++ Sbjct: 297 RIRIHDLRHSHISLLIDMGFTALAIADRVGHESIDITYRYAHLFPTRQ--AEMADKLD 352 >gi|261881024|ref|ZP_06007451.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] gi|270332233|gb|EFA43019.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] Length = 407 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 44/336 (13%), Positives = 88/336 (26%), Gaps = 29/336 (8%) Query: 30 GRRIRLPYPHESTFIPAYMSALTGSTPKREY----INSPRKKPTTLKWLISEYRKSAHWG 85 R + + + + + Y Sbjct: 78 KPRTPIERQQNKETFELATKIRAEREQQFKESMLGYRLKKDRNVNFLDYYQAYIDCYTKK 137 Query: 86 SLAVNSRISFESYFDQIIRKSGD--------FDYRKITTKHIRSGVESRKHT--PSSAIQ 135 L + ++ + IT + VE + A Sbjct: 138 DL-----RMIKIALNRFKDFLKEQYPVYEFSIKPELITKDMMEHFVEYLQSRSVGEGAKS 192 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP---WTKEDMQQFKSFWSEGSQP 192 + + ++A+ E + +PC V + + + + +E Sbjct: 193 IYQRFKKVVRYAIDHEVMLKDPCKGVVCKVDEQILRKDVLSMDEIQSLIQCHYDNENPNV 252 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL---LAMTP 249 R AF LY GLR D +++ +K ++ T + L L Sbjct: 253 RRAFILCLYCGLRFCDVKDLTYKNIDYTNRLLKFEQNKTKGHSANSGVVIPLNDGLLSLI 312 Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHEL 307 ++ + K +AG+NK S H R A + GA + Sbjct: 313 GEAPDDLDSSIFNLPSYESCCKSVKRWVKRAGINKHISWHCARHSFAVNILNNGANIKTV 372 Query: 308 MATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343 + G + E YT+ D +L + + + Sbjct: 373 SSLLGHSGLKHTEKYTRAVD--KLKSEAINSLPELK 406 >gi|158318043|ref|YP_001510551.1| integrase family protein [Frankia sp. EAN1pec] gi|158113448|gb|ABW15645.1| integrase family protein [Frankia sp. EAN1pec] Length = 416 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 38/380 (10%), Positives = 102/380 (26%), Gaps = 55/380 (14%) Query: 19 GKIIYY-----------FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67 G + + + +GRR R+P + + R+ Sbjct: 31 GSVYWREDRQRWVIEIDYGVVNGRRKRVPRYFRTQEEAIEEQRKARQSKADGLTTLDRRS 90 Query: 68 PTTLKWLISEYRKS-AHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVES 125 ++ + A +++ ++ + I G ++ + ++ + Sbjct: 91 R--FADFLTYWLDEIVDPSERAESTKSNYRVMVNNHIRPALGSRRLVELKHEDLQRFLNR 148 Query: 126 R---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT-KEDMQQ 181 + ++ S+ + +R AV E ++ N ++ PK + D Sbjct: 149 KAADGYSTSTMRTLRSVLRQALNEAVITEKISRNVAETLRVPKARKPKRNVAALSRDDGL 208 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII-------- 233 ++ ++ + L GLR ++ + +++ + T + Sbjct: 209 RLLAEAKSTRHYALYVLLAMVGLRRGEALALRWSDFDESAGTLRVVRQVTRVSGVKGLVV 268 Query: 234 ------------------------TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269 + F + M Sbjct: 269 GPTKSQAGTRTLTLPTRCVRVLQAHRTAQHAHRQAAGKRWKENGLIFPSTVGTHMEPRGL 328 Query: 270 SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGAD 327 + +AG+ H +R +AT++ G ++ G + Y D Sbjct: 329 NTHLSKLCQRAGLPHLGPHALRHTAATMAYALGVDWKQIQQMLGHTMLSTTMDIYVDLVD 388 Query: 328 RIRLGIKNSRRISSVVDSDD 347 + + ++ + D D Sbjct: 389 SVHR--DAASKLDAWFDEPD 406 >gi|30061863|ref|NP_836034.1| putative phage integrase [Shigella flexneri 2a str. 2457T] gi|30040107|gb|AAP15840.1| putative phage integrase [Shigella flexneri 2a str. 2457T] Length = 387 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 53/375 (14%), Positives = 107/375 (28%), Gaps = 61/375 (16%) Query: 17 RHGK-IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75 R G+ F +G+R + A T + Sbjct: 5 RRGEIWYASFTLPNGKRFKQSL-GTKDKRQATELHDKLKAEAWRVSKLGEIPDITFEEAC 63 Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP----- 130 + + S +S ++ R IT I S ++ + Sbjct: 64 VRWLEEKAHKK----SLDDDKSRIGFWLQHFAGMQLRDITESKIYSAMQKMTNRRHEENW 119 Query: 131 ------------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 ++ L+ ++ L + A +E+ ++ ++ P+ Sbjct: 120 RLRAEACRKKGKPVPEYTPKPASVATKATHLSFIKALLR-AAEREWKMLDKAPIIKVPQP 178 Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IF 222 K + IR + Q+ E + EF L +GLR S+ Q + Sbjct: 179 KNKRIRWLEPHEAQRLIDECPEPLKS--VVEFALATGLRRSNIINLEWQQIDMQRRVAWI 236 Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------------FS 270 + + K+ I V L D ++L + + + Sbjct: 237 NPEESKSNRAIGVALNDTACRVLKKQIGNHHRWVFVYKESCTKPDGTKAPTVRKMRYDAN 296 Query: 271 IWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +KA +AG++ H +R A+ AG L GW++++ Y Sbjct: 297 TAWKAALRRAGIDDFRFHDLRHTWASWLVQAGVPLSVLQEMGGWESIEMVRRYAH----- 351 Query: 330 RLGIKNSRRISSVVD 344 L + + +D Sbjct: 352 -LAPNHLTEHARQID 365 >gi|332185243|ref|ZP_08386992.1| phage integrase, N-terminal SAM-like domain protein [Sphingomonas sp. S17] gi|332014967|gb|EGI57023.1| phage integrase, N-terminal SAM-like domain protein [Sphingomonas sp. S17] Length = 299 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 42/272 (15%), Positives = 86/272 (31%), Gaps = 29/272 (10%) Query: 95 FESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYV 153 + S G + +R E ++ + ++R + + + Sbjct: 30 YRSDLTLAGEAMGG--LAEADEAALRRLAEGWACLATTTVARKAAALRRFYAFLHEEGLR 87 Query: 154 AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----------GSQPRLAFEFLLYSG 203 +P ++ RP ++ + + D+ + + E + E L SG Sbjct: 88 VDDPASALPRPGQRRSLPKVLSHADIDRLFAAIGERIGVAHPAPNDLRLAALIELLYGSG 147 Query: 204 LRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK- 261 LR S+ + + + K G V + D +A + T Sbjct: 148 LRASELVALPRNAIHPDRPFLILRGKGGAERMVPISDRARAAVAAWRVHVPTDKAWLFPG 207 Query: 262 --QKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTV 316 + ++ + KA A +AG+ S H +R AT GA + A G + Sbjct: 208 GKRHLSRIRLYQLVKALAAEAGIPPDRVSPHVLRHAFATHLLGGGADLRAVQAMLGHADI 267 Query: 317 DQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 E YT + ++ +V++ P Sbjct: 268 ATTEIYTHVE---------ATQLVELVNARHP 290 >gi|317125403|ref|YP_004099515.1| tyrosine recombinase XerC subunit [Intrasporangium calvum DSM 43043] gi|315589491|gb|ADU48788.1| tyrosine recombinase XerC subunit [Intrasporangium calvum DSM 43043] Length = 319 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 43/308 (13%), Positives = 94/308 (30%), Gaps = 28/308 (9%) Query: 58 REYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRK---SGDFDYRK 113 P +P L+ ++SE+ + + ++ ++ S + + G D + Sbjct: 9 EAVPTQPAPEPAGLEAVLSEFTRHLRSERGRSEHTTRAYVSDINHLFSFVVAHGLSDLGE 68 Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMR---VLFKWAVRQEYVAINPCLSVERPKRKTEG 170 + +RS + ++ ++ KWA R + +P L + P+R Sbjct: 69 LRLADLRSWLGAQADGGAARSTIARRAAAARTFLKWASRSGRIETDPSLRLVAPRRSRTL 128 Query: 171 IRPWTKEDMQQFKS--------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222 + + + R E L SG+R + + L Sbjct: 129 PDVLKQREASAMLDVAAVRADDADPIHVRDRAVLELLYASGIRVGELVSLDLDDLDLRER 188 Query: 223 SIKTQKTG-TIITVELPDGFMKLLAMT---------PIGKETFFINNDKQKMNATQFSIW 272 +++ G V L P F+ +++ Q Sbjct: 189 TVRVMGKGAKERVVPFGVPAASALQEWLAARRLLVGPRSGPALFLGRRGARVDPRQVRSL 248 Query: 273 FKAKATKAG--VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRI 329 + + HG+R +AT + GA + G ++ + YT +R+ Sbjct: 249 VHEVLSHLPDAPDLGPHGLRHSAATHLLEGGADLRMVQEVLGHASLATTQIYTHVSVERL 308 Query: 330 RLGIKNSR 337 R + + Sbjct: 309 RKSYEQAH 316 >gi|288916689|ref|ZP_06411064.1| integrase family protein [Frankia sp. EUN1f] gi|288351944|gb|EFC86146.1| integrase family protein [Frankia sp. EUN1f] Length = 406 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 65/380 (17%), Positives = 114/380 (30%), Gaps = 58/380 (15%) Query: 14 ERTRHGKIIYYFRKG------HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67 + +G + FR GRR +T A + S E + Sbjct: 6 YKRPNG---WEFRHDIDPDPLTGRRRTTSRGGFATKTEA-NREMRKSILAHEEGRRVDRS 61 Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR 126 T+ + E+ + SL ++ + +Y D I G+ +++T I Sbjct: 62 RRTVTEFLDEWIVAVRP-SLRPSTWSKYRTYCDSYIKPVIGNTALQELTPVRINLLYAHL 120 Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 +P S + + AVR Y+ NP VERPK Sbjct: 121 LTSGRRHQRTNQGAGLSPGSVAVVHRVLHRALRDAVRWNYLVRNPSDDVERPKLDRRVPT 180 Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH---------------- 216 WTKE ++ F G + + + +GLR Sbjct: 181 VWTKEQLRTFVDH-VRGDRLYALYLVAITTGLRRGALVGLRRHDVDLDAGTLSSSRPRIV 239 Query: 217 LQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF-----------FINNDKQKMN 265 + N + + + L K L + E F D ++ Sbjct: 240 VDNKAVDGEHKTDSAYRPLVLDPVTAKALRVHVDRWEQERTEFGFTTDLLFCWPDGTGIH 299 Query: 266 ATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYT 323 + WF+A A AG+ H VR AT + +G + G +V Y+ Sbjct: 300 PDTVTDWFQAHAKSAGLPVIRLHDVRHSYATAALKSGVHPKIVSERLGHASVAFTLAYYS 359 Query: 324 KGADRIRLGIKNSRRISSVV 343 + + + I+ ++ Sbjct: 360 HVIPG--MDAEAAGAIAGLI 377 >gi|325696149|gb|EGD38040.1| phage integrase family integrase/recombinase [Streptococcus sanguinis SK160] gi|328946727|gb|EGG40865.1| phage integrase family integrase/recombinase [Streptococcus sanguinis SK1087] Length = 328 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 35/264 (13%), Positives = 80/264 (30%), Gaps = 14/264 (5%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESRK 127 L+ + + + S ++ + ++ R +TT +R + RK Sbjct: 51 SKLLELFISAKRIEGCSEKSLKYYKIVIENMLTSL-KTAIRDLTTGDLRTYLAHYQQERK 109 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + + F W ++Y+ +P + + K ++ E ++ + Sbjct: 110 SSKVTIDNMRRIFSSFFGWLEDEDYILKSPVRRIHKIKTDKTIKETFSDEGLELLRDACD 169 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKLLA 246 E + + L +G+R + R + + K + V L Sbjct: 170 E-IRDLAMIDLLASTGMRVGELVRLNREDINFYERECLVFGKGNSERIVYFDARTKIHLI 228 Query: 247 MTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299 ++ + ++ + KA +NK H R+ AT + D Sbjct: 229 NYLDNRQDDNPALFVSLSFPYNRLLIGGVETRLRQIGEKADLNKVHPHKFRRTLATRAID 288 Query: 300 AGATAHELMATYGWKTVDQAETYT 323 G ++ G +D Y Sbjct: 289 KGMPIEQVQHLLGHVKIDTTMHYA 312 >gi|270285043|ref|ZP_06194437.1| site-specific tyrosine recombinase XerD [Chlamydia muridarum Nigg] gi|270289068|ref|ZP_06195370.1| site-specific tyrosine recombinase XerD [Chlamydia muridarum Weiss] gi|301336439|ref|ZP_07224641.1| site-specific tyrosine recombinase XerD [Chlamydia muridarum MopnTet14] Length = 299 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 36/280 (12%), Positives = 85/280 (30%), Gaps = 27/280 (9%) Query: 73 WLISEY--RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRK 127 LI ++ S +A S ++ +++ I + + K Sbjct: 8 QLIEQFTIFLSVD-RGIAPLSVQAYCQDILLFLQRVPIETTDMINQESVFLFVEKCHQAK 66 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 + ++ + L +++V F + + + P + E PK + E++ + Sbjct: 67 ESETTLARRLIALKVFFHFLKDAKLIHQQPFI--EHPKVWKRLPSILSTEEVNSLLNQPL 124 Query: 187 -------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239 ++ +G+R S+ C + + ++ + + T + Sbjct: 125 NTLNLDAYIANRDTAILYTFYATGIRVSELCDLCIGDISDDFIRVTGKGRKTRLVPISIK 184 Query: 240 GFM---KLLAMTPIGKETFFINNDKQKMNATQ----FSIWFKAKATKAGV----NKSAHG 288 L M + + + ++ S +K A + + S H Sbjct: 185 ARQTIDSYLTMFRERFQKKNPSEEHVFLSIRGKKLERSCVWKRITFYAKLVTTKHISPHS 244 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 +R AT + A + G + E YT A Sbjct: 245 LRHAFATHLLNNQADLRIIQEMLGHARISSTEIYTHVASE 284 >gi|241992519|gb|ACS73597.1| IntI1 [uncultured bacterium] Length = 315 Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 35/302 (11%), Positives = 85/302 (28%), Gaps = 52/302 (17%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132 ++ + R+ + ++ + ++ ++ IR G + + + + + + S Sbjct: 16 VLDQLRERIRYLHYSLRTEQAYVNWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 ++ L + + + + RP+ T +++ + + Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230 RL + L +G+R S+ + V+ L + +I ++ Sbjct: 134 RLFAQLLYRTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193 Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265 + + A + + M Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253 Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 F FK +AG+ K + H +R AT +G + G V YT Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313 Query: 324 KG 325 Sbjct: 314 HV 315 >gi|77562727|gb|ABB00017.1| class 1 integrase [Pseudomonas aeruginosa] Length = 323 Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 35/303 (11%), Positives = 84/303 (27%), Gaps = 52/303 (17%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132 ++ + R+ + ++ + ++ + IR G + + + + + + S Sbjct: 16 VLDQLRERIRYLHYSLPTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 ++ L + + + + RP+ T +++ + + Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230 RL + L +G+R S+ + V+ L + +I ++ Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193 Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265 + + A + + M Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253 Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 F FK +AG+ K + H +R AT +G + G V YT Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313 Query: 324 KGA 326 Sbjct: 314 HVL 316 >gi|85374026|ref|YP_458088.1| tyrosine recombinase XerC [Erythrobacter litoralis HTCC2594] gi|84787109|gb|ABC63291.1| tyrosine recombinase XerC [Erythrobacter litoralis HTCC2594] Length = 264 Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 35/230 (15%), Positives = 68/230 (29%), Gaps = 16/230 (6%) Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 +T + + + +SA + L++++ +A + A + P+ K Sbjct: 17 NAVTLRRHLAARRAEGLANTSAARELSALKAFIAYARSETGDAEATAPRLRGPRIKKGLP 76 Query: 172 RPWTKEDMQQFKSF-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 RP T ++ G + R L +GLR +++ + + Sbjct: 77 RPVTPDEAINLADTVDASAADDWIGKRDRAVLLLLYGAGLRIAEALSLTGKAVPLGESLQ 136 Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKA 277 T K G V + +A ++ Sbjct: 137 VTGKGGKQRVVPILPLIGDAVADYAKTCPWPIEPKGPLFRGAKGGPLSQGMIQKTTARAR 196 Query: 278 TKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 G+ + H +R AT AGA L G ++ + YTK Sbjct: 197 RALGLPDTATPHALRHSFATHLLGAGADLRSLQELLGHASLGSTQIYTKV 246 >gi|297559947|ref|YP_003678921.1| integrase family protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844395|gb|ADH66415.1| integrase family protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 328 Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 46/307 (14%), Positives = 94/307 (30%), Gaps = 44/307 (14%) Query: 61 INSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITT 116 + ++ L + + + +LA N+ ++ + G ++ Sbjct: 2 ADRAGEERDPLARVCAAFLDHLSAERALADNTLAAYRRDLRRYRAYLAGHGVLSPERVGP 61 Query: 117 KHIRSGVESRKHT--------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168 + + + + +SA + L ++R L ++A R+ + +P V P Sbjct: 62 AQVGDFLRALREGDADHPPLGAASAGRALAAVRGLHRFAAREGWTDADPAAEVSPPAPPM 121 Query: 169 EGIRPWTKEDMQQFK-------------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215 + +++ + R E L +G R S++ V Sbjct: 122 RLPKAVPLASVERLLDAAGPVGAPASGDRAGLLALRDRALLEVLYGTGARVSEAVGLDVD 181 Query: 216 HLQNNIF-------SIKTQKTGTIITVELPDGFMKLLAMTPIGKETF-----------FI 257 + + + K G V L + L+ + F+ Sbjct: 182 DVADAVEGDDAVGLVRFRGKGGRERVVPLGSHARRALSGYLVRARPGLAASGRGGPALFL 241 Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTV 316 N ++ A A +AGV S H +R AT D GA + G +V Sbjct: 242 NARGGRLTRQGGWGILAAVAERAGVEGVSPHTLRHSFATHLLDGGADIRVVQELLGHSSV 301 Query: 317 DQAETYT 323 + YT Sbjct: 302 TTTQIYT 308 >gi|15834875|ref|NP_296634.1| site-specific tyrosine recombinase XerD [Chlamydia muridarum Nigg] gi|34223084|sp|Q9PL53|XERD_CHLMU RecName: Full=Tyrosine recombinase xerD gi|7190294|gb|AAF39124.1| integrase/recombinase XerD [Chlamydia muridarum Nigg] Length = 301 Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 36/280 (12%), Positives = 85/280 (30%), Gaps = 27/280 (9%) Query: 73 WLISEY--RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRK 127 LI ++ S +A S ++ +++ I + + K Sbjct: 10 QLIEQFTIFLSVD-RGIAPLSVQAYCQDILLFLQRVPIETTDMINQESVFLFVEKCHQAK 68 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 + ++ + L +++V F + + + P + E PK + E++ + Sbjct: 69 ESETTLARRLIALKVFFHFLKDAKLIHQQPFI--EHPKVWKRLPSILSTEEVNSLLNQPL 126 Query: 187 -------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239 ++ +G+R S+ C + + ++ + + T + Sbjct: 127 NTLNLDAYIANRDTAILYTFYATGIRVSELCDLCIGDISDDFIRVTGKGRKTRLVPISIK 186 Query: 240 GFM---KLLAMTPIGKETFFINNDKQKMNATQ----FSIWFKAKATKAGV----NKSAHG 288 L M + + + ++ S +K A + + S H Sbjct: 187 ARQTIDSYLTMFRERFQKKNPSEEHVFLSIRGKKLERSCVWKRITFYAKLVTTKHISPHS 246 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 +R AT + A + G + E YT A Sbjct: 247 LRHAFATHLLNNQADLRIIQEMLGHARISSTEIYTHVASE 286 >gi|298695304|gb|ADI98526.1| probable integrase [Staphylococcus aureus subsp. aureus ED133] Length = 390 Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 50/387 (12%), Positives = 101/387 (26%), Gaps = 56/387 (14%) Query: 14 ERTRHGKIIYYFRKGH----GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 R Y G G+ + A A R + Sbjct: 4 YEKRGNTWRYRISLGKDAETGKYKYISNSGFKRKSDAKHHAEMVERQLRN-GEYIAPSTS 62 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--K 127 T K + ++ K + V+S + E I + + + I + V + Sbjct: 63 TFKQVADDWLKQY-ANEVKVSSVRAREKAIHHAIERFNNKPIQTINKHEYQRFVNDISAQ 121 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---- 183 ++ + + S ++FK+A + + I P ++RPK+K E ++F Sbjct: 122 YSKNYVDSIIASTNMIFKYAYDMKLIRILPSEGIKRPKKKVSVEELEDTEIHKKFLEKDE 181 Query: 184 --------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF------------- 222 F L Y+G+R + + Sbjct: 182 LFQFLEVAKNHHSPQNSFEVFCTLAYTGMRAGELLALKWSDIDFENNTINITKTYYNPNN 241 Query: 223 ------------------SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264 ++ D + F + + + Sbjct: 242 NKKQYQVLTPKTESSIGKIPVDPHVIKLLKNYKVDVQDTWKNELYVDNNFVFTDVNGYPL 301 Query: 265 NATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE- 320 + +W KA K + S H R + +AG E+ K ++ Sbjct: 302 VIKKLQLWIKAILKKTDITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMN 361 Query: 321 TYTKGADR-IRLGIKNSRRISSVVDSD 346 Y K + + + ++ V D Sbjct: 362 IYAKITNSYKKDASQKFSKLMESVSKD 388 >gi|152973358|ref|YP_001337138.1| putative prophage gp Int for integrase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150958207|gb|ABR80237.1| putative prophage gp Int for integrase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 335 Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 50/332 (15%), Positives = 82/332 (24%), Gaps = 38/332 (11%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 + G I + R+ + T P ++ TLK Sbjct: 4 RKNPTGGWICELYPNGAKGKRIRKKFATKGEALAFEQYTVQNP----WQEEKEDRRTLKE 59 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR------- 126 L+ + SAH +L + + G+ R + E R Sbjct: 60 LVDSWY-SAHGITLKDGLKRQLAMH--HAFECMGEPLARDFDAQMFSRYREKRLKGEYAR 116 Query: 127 -----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + +P + L R +F R L RP R E W +D Sbjct: 117 SNRVKEVSPRTLNLELAYFRAVFNELNRLGEWKGENPLKNMRPFRTEEMEMAWLTQDQIS 176 Query: 182 FK---SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 E L +G R S++ L + K TV + Sbjct: 177 QLLGECKRHEHPDLETVVRICLATGARWSEAESLRKSQLAKYKITYTNTKGRKNRTVPIS 236 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA----HGVRKFSA 294 + L G+ F++ + G+ H +R A Sbjct: 237 KELYETLPDDKKGRLFSDCYG------------AFRSALERTGIELPPGQLTHVLRHTFA 284 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGA 326 + G L G + Y A Sbjct: 285 SHFMMNGGNILVLQRVLGHTDIKMTMRYAHFA 316 >gi|60550189|gb|AAX24191.1| integrase [Xanthomonas campestris pv. begoniae] gi|60550194|gb|AAX24195.1| integrase [Xanthomonas campestris pv. begoniae] Length = 339 Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 35/301 (11%), Positives = 81/301 (26%), Gaps = 48/301 (15%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----KHT 129 L+ + R ++ + ++ S+ + I +G D ++ + + + + + Sbjct: 18 LLDQVRDRLRVRHYSLRTEQAYVSWIRRFILANGKRDPAQMGQAEVEAFLTRLATDGRVS 77 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT---------------EGIRPW 174 + Q L ++ L++ +R E + + +RP+R EG Sbjct: 78 AGTQNQALAALLFLYREVLRIELPWMENLVRAKRPRRIPAVLWREEVARLLAVLEGPCWL 137 Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234 E + R+ + D + + K + Sbjct: 138 MASLPYGSGMRMMECLRLRIMDVDAARGEMLVRDGKGGKDRRVPLPHSLRKALQRKRERA 197 Query: 235 VELPDGFMKL----------LAMTPIGKETFFINNDKQKMNATQ---------------- 268 + + + LA + Sbjct: 198 LLVHVADLAAGAGRVFLPHALARKYPNADVEPGWQYLFPSARRSRDPRSGRPGRHHVSEE 257 Query: 269 -FSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 ++ +AG+ + H +R AT +AG + G K V + YT Sbjct: 258 ILQRAVQSARQQAGIVKPATCHTLRHSFATHLLEAGHDIRTVQELLGHKDVSTTQIYTHV 317 Query: 326 A 326 Sbjct: 318 L 318 >gi|148544102|ref|YP_001271472.1| phage integrase family protein [Lactobacillus reuteri DSM 20016] gi|184153472|ref|YP_001841813.1| integrase [Lactobacillus reuteri JCM 1112] gi|227364526|ref|ZP_03848588.1| phage integrase/recombinase [Lactobacillus reuteri MM2-3] gi|325682358|ref|ZP_08161875.1| phage integrase family integrase/recombinase [Lactobacillus reuteri MM4-1A] gi|148531136|gb|ABQ83135.1| phage integrase family protein [Lactobacillus reuteri DSM 20016] gi|183224816|dbj|BAG25333.1| integrase [Lactobacillus reuteri JCM 1112] gi|227070435|gb|EEI08796.1| phage integrase/recombinase [Lactobacillus reuteri MM2-3] gi|324978197|gb|EGC15147.1| phage integrase family integrase/recombinase [Lactobacillus reuteri MM4-1A] Length = 324 Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 35/262 (13%), Positives = 80/262 (30%), Gaps = 12/262 (4%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHT 129 L+++Y S + S +++ + + G +T ++ + E + Sbjct: 48 QLLTKYFASKRAEGCSEKSLKYYKTTITKALASIGKNAKEIVTDELRNYLTNYQEVHNSS 107 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + + F W ++Y+ +P + + K T +T E++++ + Sbjct: 108 KVTIDNIRRILSSFFNWLEDEDYIIKSPVRRIHKVKVSTTVKETYTDEELEK-LRDNCKD 166 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLAMT 248 + +FL +G+R + + I K L Sbjct: 167 IRDLAMIDFLASTGMRVGELVLLNRDDINFQERECIVFGKGSKERIAYFDARAKLHLQKY 226 Query: 249 PIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATISADAG 301 + ++ K + G+++ H R+ AT + D G Sbjct: 227 LYTRTDSNEALFVSLYRKHTRLTIGGVESRLKHLGKRLGISRVYPHKFRRTLATTAIDKG 286 Query: 302 ATAHELMATYGWKTVDQAETYT 323 +L G K +D Y Sbjct: 287 MPIEQLQRLLGHKRIDTTLHYA 308 >gi|326790575|ref|YP_004308396.1| integrase family protein [Clostridium lentocellum DSM 5427] gi|326541339|gb|ADZ83198.1| integrase family protein [Clostridium lentocellum DSM 5427] Length = 373 Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 46/356 (12%), Positives = 107/356 (30%), Gaps = 42/356 (11%) Query: 16 TRHG----KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + G K + + + ++ A + + Sbjct: 11 DKSGRKPAKWRIRVTRNGHKYETTFFGNKKEAEQAEKDFIYQID----KGMMGSSENMLF 66 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR--KH 128 K L + ++ L NSRI++ + + + I D I I+ ++ Sbjct: 67 KDLYKKVQREYIDK-LKANSRITYRNSYDNHIGPAFDDMKLCDIKPIDIQEFATDLLEEY 125 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 ++ ++ + A + ++ +P +E + +++ + D Q E Sbjct: 126 KYNTVRVIMSKLNTCLSLAEKWGIISNSPYKHIELGQAESKSLDELMSLDNIQTLIKLYE 185 Query: 189 GSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--------------- 230 + R AF + GLR S+ ++ + N+ +I K Sbjct: 186 NDKWPLHRAAFFLAVGCGLRNSEIRALTLKDIDFNLNTITVDKQIGLYDDEKDLFTSTKT 245 Query: 231 --TIITVELPDGFMKLLAMTPIGKETFFIN------NDKQKMNATQFSIWFKAKATKAGV 282 + + P+ MK + IN + + +N+ S + + Sbjct: 246 SGSKRKIYAPEFVMKAIKEHIDSMPAIPINALIFTISKNKPINSHTLSNHLREVLIANDL 305 Query: 283 NK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKGADR--IRLGIK 334 H +R AT+ + + G K++ YT + R+ + Sbjct: 306 PLIRFHDLRHIHATLMINNNMDIATVSKRLGHKSIATTLKFYTHTVEERDKRVATE 361 >gi|323527812|ref|YP_004229965.1| integrase family protein [Burkholderia sp. CCGE1001] gi|323384814|gb|ADX56905.1| integrase family protein [Burkholderia sp. CCGE1001] Length = 358 Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 39/334 (11%), Positives = 90/334 (26%), Gaps = 27/334 (8%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 +R+R Y G + S A K T Sbjct: 5 KRSRSPNWYYRLTPPGGGSVVQGSTGTSNKEQAQELYDRLKVELWNQARLGVKPRYTWND 64 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH----- 128 + Y L+ S + +++ + R I + + +++ Sbjct: 65 AVIRYVTDRE--GLS--SLETSKTHLRWLDRHLSGVALAGIDRDRVDAIALAKRKETRVV 120 Query: 129 -------------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 + + + + +R + AV ++ P + K Sbjct: 121 RTKRGIVDTGQTVSLGTVRRVIGVLRAVLNAAVEWGWLDRAPVAKRSKVVPKRVRWLTPA 180 Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLL----YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 + + + R + E L +GL+ S + + + Sbjct: 181 EAERLLPELPGHLAEMARFSLETGLRRSNVTGLQWSQVDLVRRIAWIHPDQAKAKRAITV 240 Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVR 290 ++ + +A + + K + + ++ +AG+ N H +R Sbjct: 241 PLSETAVAVLRRQIAKKRAPEYVDSVFVYKGRPVYQTVTAAWRKALKRAGICNFRWHDLR 300 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324 A+ G H L GW+T++ + Y Sbjct: 301 HTWASWHVQRGTPLHVLKELGGWETLEMVQRYAH 334 >gi|253699016|ref|YP_003020205.1| integrase family protein [Geobacter sp. M21] gi|251773866|gb|ACT16447.1| integrase family protein [Geobacter sp. M21] Length = 439 Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 52/385 (13%), Positives = 107/385 (27%), Gaps = 61/385 (15%) Query: 14 ERTRHGKIIYYFRK---GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS------- 63 G+ ++Y+ G R + L A + + + Sbjct: 33 RVVPSGEKLWYYIYTFQGKKRYMWLGSYPAVPLAAAREACEVARAKVKAGTDPLAQKDAE 92 Query: 64 --PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121 R+K T+ L +EY + H + + + ++ + G R IT + + Sbjct: 93 LEERRKAPTVADLCAEYLE-RHAKQFKRSWQKDEQMIKRDVLPEWGKRKARDITKRDVVL 151 Query: 122 GVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT---K 176 +E P A +R +F +AV ++ + PC V+ P K R + Sbjct: 152 LLEKIMDRGAPIQANTTFALIRKMFNFAVERDVLEHTPCHGVKPPAPKVARDRVLSESET 211 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIIT 234 ++ R A + +L + R + ++ + + K Sbjct: 212 RSFWHNLDACCMSNETRRALKLVLVTAQRPGEVIGMHTDEIKGEWWILPGDRVKNKKSHR 271 Query: 235 VELPDGFMKLL----------------AMTPIGKETFFINNDKQKMNATQ---------- 268 V L ++L Q + Sbjct: 272 VYLSTLAREILAEAVAENKEKLGIPGDQEYRGFMFPSPQLAKVQPIAPQALIVAVGRALA 331 Query: 269 ---FSIWFKAKATKAGVN----------KSAHGVRKFSATISADAGATAHELMATYGWKT 315 FK + G + H +R+ +AT A++G + A Sbjct: 332 SPVLDPNFKRVLDREGKPVTVNRLEVAHFTPHDLRRTAATFMAESGEMDEVIDAVLNHAK 391 Query: 316 VDQAETYT--KGADRIRLGIKNSRR 338 Y K + + +++ R Sbjct: 392 QGVIRVYNQFKYDAQKQAALESWSR 416 >gi|82777635|ref|YP_403984.1| integrase [Shigella dysenteriae Sd197] gi|81241783|gb|ABB62493.1| integrase [Shigella dysenteriae Sd197] Length = 351 Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 56/327 (17%), Positives = 103/327 (31%), Gaps = 20/327 (6%) Query: 22 IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR---KKPTTLKWLISEY 78 Y G+ L A + + + R TL + Y Sbjct: 18 YCYRDPRTGKEFGLGRDRRIAITEAIQANIELLSDSGRESLIDRIKGADSITLHAWLDRY 77 Query: 79 RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQF 136 + + + + S I RK D I+TK + + + + + +SA Sbjct: 78 ETILSERGIRPKTLLDYASKIRAIRRKLPDKPLTDISTKEVAAMLNTYVAEGKAASAKLI 137 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196 +++ +F+ A+ + +VA NP + K + R E ++ + + RLA Sbjct: 138 RSTLVDVFREAIAEGHVATNPVTATRTAKSEVRRSRLTANEYVEIYHAAEPLPIWLRLAM 197 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL---------LAM 247 + + +G R D CR + +N I+ KTG + + L L Sbjct: 198 DLAVITGQRVGDLCRMKWSDINDNHLHIEQGKTGAKLAIPLTLTIDALNISLVDTLQKCR 257 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAHGVRKFSATISADAGA 302 ET + ++ S +F +G+ + H +R SA Sbjct: 258 EASSSETIIASKHHDPLSPKTVSKYFTKARNASGLSFDGDPPTFHELRSLSA-RLYRNQI 316 Query: 303 TAHELMATYGWKTVDQAETYTKGADRI 329 G K+ A Y R Sbjct: 317 GDKFAQRLLGHKSDSMAARYRDSRGRE 343 >gi|317508618|ref|ZP_07966276.1| phage integrase [Segniliparus rugosus ATCC BAA-974] gi|316253085|gb|EFV12497.1| phage integrase [Segniliparus rugosus ATCC BAA-974] Length = 444 Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 48/384 (12%), Positives = 96/384 (25%), Gaps = 76/384 (19%) Query: 14 ERTRHGKIIYYFRKG----HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 ++TR G Y G G+R + A + R+ ++ R Sbjct: 6 KKTRGGTWYYVVDLGPDPTSGKRRQERKRGFRIKDDAEDALTERLAEIRQGVHVDRSV-- 63 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128 T+ + ++ + L + + + D ++ G R + HI + Sbjct: 64 TVAAYLRDWIDAKEAAGLRAKTVKGYRQHIDTHLVPHLGHIKLRDLRATHIEKMLREIAK 123 Query: 129 ----------------------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 + SS + ++ A R+ ++ N +RP Sbjct: 124 PPKQPAPNEKIATGKHRKLKPLSASSIRRVHATLSSALGAAKRKRLISFNAAADSDRPAA 183 Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI----- 221 +RPW D+ F + + +E +GLR + C L Sbjct: 184 TRPKVRPWEPHDLGLFLDH-AASERFGPMYEVAALTGLRRGELCGMRWDDLDFERSVFVV 242 Query: 222 -------------FSIKTQKTGTIITVEL--------------------------PDGFM 242 + D Sbjct: 243 RQQLVVVSSAGIACPYCQGQHKQFRFSTPKTASGEARIVDLDAATVGVLMAQRLAQDAER 302 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301 + + F D + F G+ + H +R A++ AG Sbjct: 303 EEWGDLYVDHGLVFAREDGNPTPPDDVTERFNKLTDDLGLRRIRLHDLRHGQASLMLAAG 362 Query: 302 ATAHELMATYGWKTVD-QAETYTK 324 + G ++TY+ Sbjct: 363 VEMAVVSKRLGHSRHAFTSDTYSH 386 >gi|13445488|gb|AAK26251.1|AF263519_1 integrase INTI1 [Pseudomonas aeruginosa] Length = 337 Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 36/303 (11%), Positives = 83/303 (27%), Gaps = 52/303 (17%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132 ++ + R+ + ++ + + ++ IR G + + + + + H S Sbjct: 16 VLDQLRERIRYLHYSLRTGQGYVNWVCAFIRFHGVGHPATLGSSEVEAFLFWLAHERKVS 75 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 ++ L + + + + RP+ T +++ + Sbjct: 76 VSTHCQALAALLFFYGKVLCTDLPWLQEIGRPRPLRRLPVVLTPDEVVCILG--FLEGEH 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230 RL + L +G+R S+ + V+ L + +I ++ Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193 Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265 + + A + + M Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253 Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 F FK +AG+ K + H +R AT +G + G V YT Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313 Query: 324 KGA 326 Sbjct: 314 HVL 316 >gi|188492334|ref|ZP_02999604.1| integrase for prophage CP-933T [Escherichia coli 53638] gi|188487533|gb|EDU62636.1| integrase for prophage CP-933T [Escherichia coli 53638] Length = 341 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 46/345 (13%), Positives = 93/345 (26%), Gaps = 34/345 (9%) Query: 14 ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 R GK + Y GRRIR + + + + + S L Sbjct: 4 RRLASGKWLCECYPYGASGRRIRRQFATKGEALSHERRLMVHAD------VSVVNSSKRL 57 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----- 126 L+ + + + ++ + + GD + + R Sbjct: 58 SELVDIWY---EMHGKTLTTGEERQAKLKAVCERMGDPLVSEFDRNMFAVYRKRRLSGEW 114 Query: 127 ------KHTPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDM 179 ++ + + + +F R + NP V K + ++++ Sbjct: 115 SANKKKPTKEATVNREQSYLHAVFSELKRLGAWAGENPLEGVRHFKVSESELSFLYEDEI 174 Query: 180 QQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237 ++ S E L L +G R S++ + + + K+ TV + Sbjct: 175 ERLLSVCDESGNADLGSVVRVCLATGARWSEAEKLTQSQVLPGRITFTNTKSKKNRTVPI 234 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATIS 297 D KLL + F+ K + + H +R A+ Sbjct: 235 SDNIQKLLPKRRGRLFSNC---------YEAFTWALKKAKIELPEGQRTHVLRHTFASHF 285 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342 G L G T+ Y A + + Sbjct: 286 MMNGGNILVLQQILGHSTILMTMRYAHFAPDHLEAAVTLNPLDRI 330 >gi|167813643|ref|ZP_02445323.1| prophage integrase [Burkholderia pseudomallei 91] gi|254188210|ref|ZP_04894722.1| prophage integrase [Burkholderia pseudomallei Pasteur 52237] gi|157935890|gb|EDO91560.1| prophage integrase [Burkholderia pseudomallei Pasteur 52237] Length = 376 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 43/324 (13%), Positives = 102/324 (31%), Gaps = 24/324 (7%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 +R ++G ++ G RIR S A A ++ + T Sbjct: 5 KRQKNG-PWWFDLSIDGSRIR-QSSGTSDRRAAEELAAKVASDYWRQKKLGERPAVTWDA 62 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK------ 127 + + K ++ + + + R I + I++ +E++ Sbjct: 63 AVVHWLKQNQHQRSLETTKQR----LRWLTDQLKGENVRNIDRERIQALIETKAAEKYRG 118 Query: 128 --HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 ++ + + ++ V+ + ++ P + + + + + T+ Q+ Sbjct: 119 SPVAGATVNRHMAALSVILHHCHAEGWIDAVP--PIRKLRENSARLTWLTRAQAQRLL-- 174 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGF 241 + R F L +GLR S+ + K G +I+V L + Sbjct: 175 EELPTHLRQMARFALATGLRESNVRLLEWAQVDRERALAWIHADQAKAGKVISVPLNEDA 234 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADA 300 + +L + + + ++ ++ +AG+ H +R A+ A Sbjct: 235 LGVLREQQGQHKRYVFVYKGAPI-GRIYNHAWQKACVRAGLSGLRFHDLRHTWASWHVQA 293 Query: 301 GATAHELMATYGWKTVDQAETYTK 324 G L GW + Y Sbjct: 294 GTPLPILQQLGGWASYQMVLRYAH 317 >gi|146310657|ref|YP_001175731.1| phage integrase family protein [Enterobacter sp. 638] gi|145317533|gb|ABP59680.1| phage integrase family protein [Enterobacter sp. 638] Length = 387 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 59/380 (15%), Positives = 114/380 (30%), Gaps = 58/380 (15%) Query: 15 RTRHGKIIYYFRKGHGRRIRLP-YPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 R G +F G+RIR + L + + I T + Sbjct: 4 TLRGGVWHCHFVTPSGQRIRRSLGTGDKKQAQELHDKLKSEAWRVDKI--GELATRTFEE 61 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP--- 130 + + S + + +R D IT + + V + Sbjct: 62 CCIRWIREKDHK----RSLDDDRTKIEYFLRHFSGRDVSTITAEQVHDAVSKMVNRKHIQ 117 Query: 131 --------------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164 ++ Q L+ MR L K A I +++ Sbjct: 118 VWESRRDAAIRRGKEPPPYGDKPVSQATKSQHLSFMRSLLKAAADDWG-WIKSAPAIKTR 176 Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 K ++ IR T+++ ++ E +P + F L +GLR S+ Q + Sbjct: 177 KPVSKRIRWLTRDEAERLIECMPESIKPVVIFA--LATGLRRSNIVDLEWQQVDMQRKVA 234 Query: 225 KTQKTG----TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF----------- 269 I V L D ++L + + + K Sbjct: 235 WVNPENAKAGKAIGVALNDTACRVLRNQIGKSKVWVFAHTKAATRPDGTLTPAVRKMRID 294 Query: 270 -SIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 + +K KAG+ + H +R A+ +G L GW++++ Y A Sbjct: 295 DNTAWKIGLEKAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAP 354 Query: 328 RIRLGIKNSRRISSVVDSDD 347 +++R+I ++ + D Sbjct: 355 NH--LTEHARKIDAIFGNHD 372 >gi|320450285|ref|YP_004202381.1| integrase/recombinase [Thermus scotoductus SA-01] gi|320150454|gb|ADW21832.1| integrase/recombinase [Thermus scotoductus SA-01] Length = 304 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 41/275 (14%), Positives = 92/275 (33%), Gaps = 20/275 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144 + + R + + + +R+ + + P FL ++R + Sbjct: 33 RGYSPRGVRRYLQDLALWFRFLQEEGFTP-GPEAVRALLLKERWAPRRVQGFLAALRSYY 91 Query: 145 KWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE---FLL 200 ++ + + +P + RPK E++++F + RL FL Sbjct: 92 RYLSQVKGEAVSDPTEGIGRPKAGRRLPLHPAPEELRRFLEALEAEKEARLLSRLARFLY 151 Query: 201 YSGLRCSDSCRAGVQHLQ----NNIFSIKTQKTGTIITVELPDGFMKLL------AMTPI 250 +GLR S++ +++ + K V L ++L Sbjct: 152 GTGLRISEALSLKGRNVILEGSVPVAIRVVGKGNKERLVPLSRTAREVLLELGPPQGNVS 211 Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHEL 307 + +A F+ A +AG++ + H +R AT+ + G + Sbjct: 212 IFTFTHGRHRGSVPSARYVEARFREAALRAGLDPRRFTPHKLRHAYATLLVENGVELDAV 271 Query: 308 MATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342 G +++ + Y A R RL + + R+ + Sbjct: 272 KDLLGHESIATTQIYLH-ASRERL-REAASRLPEL 304 >gi|241992559|gb|ACS73625.1| IntI1 [uncultured bacterium] Length = 315 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 34/302 (11%), Positives = 83/302 (27%), Gaps = 52/302 (17%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132 ++ + + + ++ + ++ + IR G + + + + + + S Sbjct: 16 VLDQLHERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 ++ L + + + + RP+ T +++ + + Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230 RL + L +G+R S+ + V+ L + +I ++ Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193 Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265 + + A + + M Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253 Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 F FK +AG+ K + H +R AT +G + G V YT Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313 Query: 324 KG 325 Sbjct: 314 HV 315 >gi|331091853|ref|ZP_08340685.1| hypothetical protein HMPREF9477_01328 [Lachnospiraceae bacterium 2_1_46FAA] gi|330402752|gb|EGG82319.1| hypothetical protein HMPREF9477_01328 [Lachnospiraceae bacterium 2_1_46FAA] Length = 350 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 55/361 (15%), Positives = 105/361 (29%), Gaps = 39/361 (10%) Query: 12 TKERTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 K++T+ G FR G++ + T A + Sbjct: 4 YKDKTQ-GTWYVSFRYIDWTGKKTQKLKRGFKTKKEALNYEKEFIRKTAADMKMEMNS-- 60 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH 128 I Y + L NS + + I+ G +IT I + Sbjct: 61 ----FIQVYFEDKK-NELKENSIRNKQHMMNKHIVPYFGTRKMNEITPAEIIQWQNIIQE 115 Query: 129 TPSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERP-KRKTEGIRPWTKEDMQQFKS 184 S + LF A + + NPC V++ K + WTK + +F + Sbjct: 116 KGYSKTYERMIQNQLNALFNHAQKIYNLKENPCKKVKKMGKSDANKLEFWTKAEYDRFIA 175 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSD----------------SCRAGVQHLQNNIFSIKTQK 228 GS+ L FE L ++G+R + ++ + Sbjct: 176 GIEPGSEDYLIFEILFWTGIREGELLALSLSDFDMSGNLLHINKTYNRIKKRDVIDTPKT 235 Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAH 287 ++ T+++P+ + + F + + A K GV H Sbjct: 236 ENSVRTIDIPNFLKEEVQEYAKKHYGFPEDQRLFPIVARTLQKRLKKYEALTGVKPIRVH 295 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVDSD 346 +R G + G K + TY L ++++ ++D+ Sbjct: 296 DIRHSHVAYLIYQGVEPLIIKERLGHKDIQMTLNTYGH------LYPSQQKKVAEMLDNK 349 Query: 347 D 347 Sbjct: 350 R 350 >gi|319646365|ref|ZP_08000595.1| hypothetical protein HMPREF1012_01631 [Bacillus sp. BT1B_CT2] gi|317392115|gb|EFV72912.1| hypothetical protein HMPREF1012_01631 [Bacillus sp. BT1B_CT2] Length = 379 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 58/363 (15%), Positives = 122/363 (33%), Gaps = 45/363 (12%) Query: 12 TKERTRHG-KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN--SPRKKP 68 + +T+ G K ++ G + A+ + ++ I+ + + Sbjct: 5 QQYKTKTGYKWLFKMGVGIDPKTGNRKTTTRRGFKTKKEAVAAAAEFQKEIDNNALARND 64 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK 127 T + + E+ H ++ ++R S F I+ G + IT + + + Sbjct: 65 ITFEDVFKEWWD-VHSKTIKRSTRYRKLSNFKKHILPHFGKLKIKDITRAYCQKVINLIA 123 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-------RKTEGIRPWTKEDMQ 180 S ++FK+A+R EY+ NP V PK ++ E W K +++ Sbjct: 124 QDIDSVQNVKIQANLVFKYALRMEYITKNPMEFVVIPKKEENFLSQEEEKRNFWEKAEIK 183 Query: 181 QFKS--FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----------------QNNIF 222 F Q + F L+++G+R + + + Sbjct: 184 TFLEKAHSQLAPQDYVMFYVLIFTGMRKGELLALEWKDVDLKEKTINIKQTMFFENGEEV 243 Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF-------------INNDKQKMNATQF 269 T+K + + + D ++L ++ I D + + Sbjct: 244 IQTTKKYHSKRIITIDDQTAQILKKWRTQQKEMLLSNGITSEAKYVLIRGDMRPLRLAYP 303 Query: 270 SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGAD 327 + K +++ + HG R A+I +AGA+ E+ A G K + YT Sbjct: 304 NDLLNRMIAKNKLHRITIHGFRHSHASILFEAGASIKEVQARLGHKEIQTTMNIYTHVTK 363 Query: 328 RIR 330 + Sbjct: 364 TAK 366 >gi|160932995|ref|ZP_02080384.1| hypothetical protein CLOLEP_01837 [Clostridium leptum DSM 753] gi|156868069|gb|EDO61441.1| hypothetical protein CLOLEP_01837 [Clostridium leptum DSM 753] Length = 393 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 51/376 (13%), Positives = 106/376 (28%), Gaps = 52/376 (13%) Query: 14 ERTRHGKI--IYYFRKGHGRRIRLP-YPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 ++ G+ Y G+R Y + + K I S R + Sbjct: 7 KKRPDGRYAMQIYLGTVDGKRKYKTVYGGTPKEVQKKADEVRILMGKGINITSMRD---S 63 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 ++ KS ++V+ S+++Y + +I I+S + K Sbjct: 64 FGDWAEKFLKSKEADGVSVSQLNSYKNYCRNHLSPLYMKSLSEILPADIQSIINETKLAK 123 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 ++ + +F+ A+ + NP V PK E R Q + Sbjct: 124 NTLKAIRNTASQIFRLAIENRAIDFNPADYVRIPKIAPEFHR--DALTDDQQRWIRETPH 181 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGV----------------QHLQNNIFSIKTQKTGTIIT 234 + + A +LYSGLR ++ + + T+ I Sbjct: 182 RAQRAAMLMLYSGLRRGEATALTWADVDLNTGTISVTKSAEMINGKPHIKTTKTETGIRI 241 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDK----QKMNATQFSIWFKAKATKAGVNK------ 284 V +P + L + ++ + M + + + V Sbjct: 242 VRIPQVLIDFLRNEKDSEFPLCMHVIHSARGKMMTNQAWRCMWDSYLLDLNVKYGYGGKI 301 Query: 285 ---------------SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADR 328 + H +R A++ AG G + YT Sbjct: 302 NKFDPHGVVMRIPAFTPHWLRHTFASLLYRAGVDVLTARDQLGHSDIKTTLMIYTHL--D 359 Query: 329 IRLGIKNSRRISSVVD 344 K+ +++ ++ Sbjct: 360 KLYKEKHMDKLNEYLN 375 >gi|159901675|ref|YP_001547921.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779] gi|159894714|gb|ABX07793.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779] Length = 291 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 34/272 (12%), Positives = 85/272 (31%), Gaps = 27/272 (9%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129 L L+ ++ ++ Q+ + + +++ +R ++ + Sbjct: 5 LRQRMIDDMQIRGLSAQTQSAYVQAVRQLAQYF-NTPPDRLSDDQLRRYFLYLRTEKQVS 63 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 S+ L ++R L++ +++ + P L RP + ++++++ Sbjct: 64 ASTITVTLCAIRFLYQHTLQRSW----PLLDALRPPKAQPLPVVLSRDEVRAIL-HQVRT 118 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------TIIT 234 + R+ + GLR + R V ++ + + Q + Sbjct: 119 PRHRVCLSIIYACGLRLMEGVRLQVCNIDSARLMLHIQHGKGNKDRYIPLPPPALAMLRA 178 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292 + L + + I M+ F +G+ K + H +R Sbjct: 179 HWRSHQHPRWLFPSHWVDKALPIAARSVSMSRDGVQRAFLLACQASGMRKHATVHTLRHS 238 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324 AT +AG + G + YT Sbjct: 239 WATHLLEAGVNLRIIQGWLGHTSPTTTAHYTH 270 >gi|322832185|ref|YP_004212212.1| integrase family protein [Rahnella sp. Y9602] gi|321167386|gb|ADW73085.1| integrase family protein [Rahnella sp. Y9602] Length = 328 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 55/319 (17%), Positives = 93/319 (29%), Gaps = 18/319 (5%) Query: 14 ERTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 ++ G+ R GRRIR + Y + + +E++ P L Sbjct: 4 KKLDDGRYEVDVRPQGSEGRRIR-RKFNTKGEAQIYERHVLVNYHNKEWLEKP-ADRRKL 61 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--- 128 L+ + S + G +IT K I + Sbjct: 62 TDLLELWWLYHGKHHNRGLIEKGRLSAIMIKFAEIGVTRADQITKKAITDYRVKMMNEGL 121 Query: 129 TPSSAIQFLTSMRVLF-KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 P+S + +F K EY + +P V++ K + + E++ Q Sbjct: 122 KPASVNRHQAIFSGMFTKLIDANEYHSEHPFRGVKKLKEAEPEMAFLSTEEITQLLD--M 179 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247 R A L +G R S+ +H+ N + + K G T+ L+ Sbjct: 180 LEGDNRNAVLLCLATGGRWSEVADLKAEHIINCMLTFMKTKNGRRRTIP--------LSE 231 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307 + N +A ++ H +R AT G L Sbjct: 232 GLVKMVKKRSTGKLFTPNYDTVRNTLRAMKPDLPAGQAVHVLRHTFATHFMMNGGNIITL 291 Query: 308 MATYGWKTVDQAETYTKGA 326 G TV Q Y A Sbjct: 292 QRILGHSTVQQTMVYAHFA 310 >gi|238920128|ref|YP_002933643.1| site-specific recombinase, phage integrase family [Edwardsiella ictaluri 93-146] gi|238869697|gb|ACR69408.1| site-specific recombinase, phage integrase family [Edwardsiella ictaluri 93-146] Length = 336 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 60/334 (17%), Positives = 103/334 (30%), Gaps = 35/334 (10%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 +PP V G+ Y F +G IRL + +A +R Sbjct: 13 MPPRVYM-----GRSAYEFHPINGGNIRLCDKTATQ--AQVWAAWEALINERPD------ 59 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 TTL L+ + KSA + LAV ++ + Y +I+ G I +H+R ++ R Sbjct: 60 -TTTLAGLVERFLKSADFFGLAVETQKDYHKYSQKILSVFGKMPPDAIRPEHVRRYMDKR 118 Query: 127 KHTPSS-AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + A + + M +++WA + YV NP V + K + + Sbjct: 119 GLRSHTQANREKSFMSRVYRWAYERGYVKGNPTKGVRQFKEPGRDRY---ITHQEYLALY 175 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 R+A E R D IK KT + + Sbjct: 176 GVTSDVVRVAMELAYLCCARQKDVLNMMKSQFLPEGILIKQSKTAVGQIKAWSPRLREAI 235 Query: 246 A-------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG-------VNKSAHGVRK 291 + K + F+ ++ A N + H ++ Sbjct: 236 KLASTLPLDSGRSTLYVIHQRSGDKYSRHGFNSRWRQAKKAAKKRYPELDFNFTFHDLKA 295 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKG 325 + +E A G K V+Q Y + Sbjct: 296 KGISDLK---GNIYEKQAISGHKNVEQTARYNRK 326 >gi|291527074|emb|CBK92660.1| Site-specific recombinase XerC [Eubacterium rectale M104/1] Length = 377 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 45/369 (12%), Positives = 100/369 (27%), Gaps = 49/369 (13%) Query: 14 ERTRHGKI--IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + G+ YY G + + + ++ LT +P++ T+ Sbjct: 9 RKRADGRWEGRYYIVDAAGSK-KCKSVYGHSYKEVTERLLTAKAASLNQTAAPKQSAITV 67 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 K + ++ +S S ++ + + + I G+ ++ I + Sbjct: 68 KAVAEKWLESI-ASSRKCSTIQKYSTIYNKYIKPNWGESVIDELNQNEILKEL-PETAGE 125 Query: 131 SSAIQFLTSMRVLFKWAVRQE---YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S L + + + ++ T + + + + Sbjct: 126 SVTKSILCIFNSILAYGAATYGTGEIHLSYRAKRSSVTSSNNINTINTIDQQKLTEYLLT 185 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--------------- 232 E +L L+ GLR + C + + ++ +T Sbjct: 186 ELDIYKLGILLCLFMGLRLGEICALKWEDIDMISRTLHVNRTVQRLPVDTVHTSDSSQNN 245 Query: 233 --------------------ITVELPDGFMKLLAMTPIGKETFFINN--DKQKMNATQFS 270 + +PD L+ Q M+ + Sbjct: 246 HTATKKTSLYIDSPKTSNSLREIPIPDFIYDKLSDYYNTSMKGDSYFLKKNQPMDPRTYQ 305 Query: 271 IWFKAKATKAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK-GAD 327 F +AG+ + H +R AT +GA A + G V+ Y + Sbjct: 306 NRFHIYIKEAGIGNTHFHALRHTFATNCISSGADAKSVSEILGHSNVNITLNRYVHPNLE 365 Query: 328 RIRLGIKNS 336 R I + Sbjct: 366 TKRSAINSI 374 >gi|223044340|ref|ZP_03614375.1| integrase [Staphylococcus capitis SK14] gi|222442308|gb|EEE48418.1| integrase [Staphylococcus capitis SK14] Length = 353 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 40/354 (11%), Positives = 97/354 (27%), Gaps = 27/354 (7%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 + +GK Y F R + + + A A T+ Sbjct: 4 RKQPNGKWYYDFGYEGKRYKKKGFKTKREATEAESIARNKLMK-----GFIINNKTSFID 58 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 +++ + S +F++ +Q + + + I + + + A Sbjct: 59 YYNDWIVVNKEDVVTEKSYATFKNAINQFKKFLEKENLKDIIMSDLNMTIYRKFIKWYGA 118 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR----------KTEGIRPWTKEDMQQFK 183 ++R + + AI L + P + E + + ++ + K Sbjct: 119 NHSTETVRKIHNCLKQSIDDAIQEGLIHKDPTYKVVTKGTIPAQREEEKFMSIDNFIKLK 178 Query: 184 SFWSEGSQP-RLAFEFLLYSGLRCSD-------SCRAGVQHLQNNIFSIKTQKTGTIITV 235 + S + L+ +G R + + +T + Sbjct: 179 QYVSNTPIQSYVFIYILIITGGRFGEVQRLCTTDLNYRECTIHLPGTKTETSDRTVDVPH 238 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294 K LA P+ T N + S + + + + H +R Sbjct: 239 TDMKILQKTLAQMPVNLSTRLFNTGVSLITHNAVSKVLQKFCLENKIGKYTLHSIRHTHC 298 Query: 295 TISADAGATAHELMATYGWKTVDQAE-TYTKGAD--RIRLGIKNSRRISSVVDS 345 + + + + G K + Y+ D + IK + + + + Sbjct: 299 SYLLHNDISIYYISKRLGHKNIKTTMDVYSHLLDEIEQKEKIKAVKLLEDMTGT 352 >gi|241992508|gb|ACS73589.1| IntI1 [uncultured bacterium] Length = 315 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 35/302 (11%), Positives = 84/302 (27%), Gaps = 52/302 (17%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132 ++ + R+ + ++ + ++ + IR G + + + + + + S Sbjct: 16 VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 ++ L + + + + RP+ T +++ + + Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLPWPQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230 RL + L +G+R S+ + V+ L + +I ++ Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193 Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265 + + A + + M Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253 Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 F FK +AG+ K + H +R AT +G + G V YT Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313 Query: 324 KG 325 Sbjct: 314 HV 315 >gi|298482012|ref|ZP_07000201.1| transposase [Bacteroides sp. D22] gi|298271876|gb|EFI13448.1| transposase [Bacteroides sp. D22] Length = 407 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 40/283 (14%), Positives = 93/283 (32%), Gaps = 27/283 (9%) Query: 72 KWLISEYRKSAHW------GSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHI 119 + L +R+ +A + +E+ D +++ + I Sbjct: 109 RTLFEVFREHNDKCVQLSGTDMAPATVQRYETSLKHTRDFVWETYHKKDVLLDEVSRQFI 168 Query: 120 RSGVESRK----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 K ++A ++L + + + + A+ + ++ +P L + Sbjct: 169 EDYEFWLKTEKKCCHNTATKYLKNFKKIIRIALAKGWMKNDPFLEIRF-SLDKVEPDFLE 227 Query: 176 KEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 ++Q+ S + + R F F ++GL SD +H+ + ++ + G Sbjct: 228 DSEIQKLISKEIDIPRLSQVRDIFVFCCFTGLAFSDIHGLRKEHIVEDSNGVRWIRKGRQ 287 Query: 233 ITVELPDGFM-----KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA- 286 T + + + K+L + + + + + K A G+ K+ Sbjct: 288 KTKIMCNIPLMEIPLKILEKYSTNEYCKKHGVLFPVLCNQKMNAYLKELADICGIKKTLT 347 Query: 287 -HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 H R AT + G + + G V Y + DR Sbjct: 348 THVGRHTFATFALANGVSIESVAKMLGHTNVQMTRHYARVLDR 390 >gi|260855846|ref|YP_003229737.1| integrase [Escherichia coli O26:H11 str. 11368] gi|257754495|dbj|BAI25997.1| integrase [Escherichia coli O26:H11 str. 11368] gi|323152673|gb|EFZ38948.1| integrase [Escherichia coli EPECa14] Length = 333 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 47/329 (14%), Positives = 94/329 (28%), Gaps = 32/329 (9%) Query: 14 ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + GK + Y G+RIR + +Y L S E+ + + L Sbjct: 4 RKIPSGKWLCECYPYGASGKRIR-KQFATKSEALSYERRLMNSRVGDEFQDGSGPR---L 59 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----- 126 LI+ + + +L+ + + I + GD + + E R Sbjct: 60 SELIARWFEMYG-KTLSSG--AERKVKLEAICSRLGDPFASQFDKNMFATYRERRLSGEW 116 Query: 127 ------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 K + ++ + + + +F R + L+ R R+ E + D Sbjct: 117 NPKGKKKLSEATVNREQSYLHAVFAELKRLGEWSGENPLTGIRKFREEEKELAFLYVDEI 176 Query: 181 QFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237 + + S+ + + L +G R S++ + + K TV + Sbjct: 177 ERLLIACDESRNKDLGVVVRIGLATGARWSEAEGLKQSQVLPGRITFVKTKGKKNRTVPI 236 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATIS 297 +L + F K + + H +R A+ Sbjct: 237 SPQLQAMLPQKRGALFSPC---------YEAFDAAIKRAKIELPDGQLTHVLRHTFASHF 287 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGA 326 G L G + Y A Sbjct: 288 MMRGGNILVLQKILGHSDIKMTMRYAHFA 316 >gi|270296259|ref|ZP_06202459.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270273663|gb|EFA19525.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 418 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 40/309 (12%), Positives = 93/309 (30%), Gaps = 18/309 (5%) Query: 45 PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESY--FDQI 102 Y +A + E + + +++ H S + + +++ +I Sbjct: 105 KEYDNAALYADTDAEQAEQLERSRSNFIEYFDHVQRTRHAHS-SDSIIVNWRRVHELLKI 163 Query: 103 IRKSGDFDYRKITTKHIRSGVESRKHTP-----------SSAIQFLTSMRVLFKWAVRQE 151 K + +I K + S + + P ++A + + + K A Sbjct: 164 FAKGDTILFSQIDLKMVESFRQFIMNAPQGGTKRGTISQNTAATYFSIFKAGLKQAFIDG 223 Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCR 211 Y+ I+ V+ + + T E++ + + R A F +G+R D + Sbjct: 224 YLTIDISAKVKGIQERESRREYLTVEELNRLAQTPCDPLLKRAA-LFSALTGIRHCDIQK 282 Query: 212 AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271 ++ + T + + + + + + Sbjct: 283 LKWSEVEMFNGGYRLNFTQQKTKGVEYMPISEQAYNLCGEPKEGELLVFAGLPDPSWINR 342 Query: 272 WFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 K AG+ K + H R AT+ G + + G V + Y K D Sbjct: 343 PVKKWIEAAGITKHITFHCFRHSYATLQLAGGTDIYTVSKMLGHTNVRTTQVYAKVVDEK 402 Query: 330 RL-GIKNSR 337 + + + Sbjct: 403 KEKATETIK 411 >gi|212694197|ref|ZP_03302325.1| hypothetical protein BACDOR_03723 [Bacteroides dorei DSM 17855] gi|212663263|gb|EEB23837.1| hypothetical protein BACDOR_03723 [Bacteroides dorei DSM 17855] Length = 229 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 34/227 (14%), Positives = 72/227 (31%), Gaps = 6/227 (2%) Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 ++ ++A LT ++ + A + N + R K + TKE++ Q Sbjct: 1 MHNGKRMMGTTANNNLTKLKCILAIAYEDGLLKENIAKKLVRAKAHGNKRQFLTKEELLQ 60 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 + R A F +GLR SD R +++ T Sbjct: 61 LSQTPCKSDVLRRAGLFSCLTGLRLSDCIRLQWENIVKLADGGWGMDIITK--KTSTAAI 118 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 + + + + + +++ K +G+ K + H R AT+ Sbjct: 119 LPISEEALQLCGERGTGQVFKNLTNSTVALYLKPWIKASGIEKHITFHCFRHTFATLQLA 178 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346 G + + + + Y D ++ + RIS + + Sbjct: 179 EGTDIYTVSKLLTHSNLATTQVYADVVDELKR--DAAERISLKMPTK 223 >gi|260577378|ref|ZP_05845348.1| integrase family protein [Rhodobacter sp. SW2] gi|259020414|gb|EEW23740.1| integrase family protein [Rhodobacter sp. SW2] Length = 423 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 49/360 (13%), Positives = 99/360 (27%), Gaps = 41/360 (11%) Query: 24 YFRKGHGRRIRLPY------PHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77 Y G RR+ + A+ R P +K +I Sbjct: 49 YRHAGRQRRMNIGRWPEWSVTAARERAKELRRAIDEGHDPLAAKEEFRGAPR-VKDMIDR 107 Query: 78 YRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSGVE------------ 124 Y LA N+ S +++ G+ +IT + ++ Sbjct: 108 YIAEH-LPKLAKNNAGDQTSMLKKMVEPAWGNKLVTEITKSDVAKFLDFVAEGRPRPSKE 166 Query: 125 ----------SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS-VERPKRKTEGIRP 173 K TP A + +R +F AV E+ A NP R + E Sbjct: 167 KPNNRARKLQGHKPTPIRANRTGEVLRKMFTLAVEWEWRADNPAQGFHRRIEEARERFLG 226 Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTI 232 + +E + + +G R + A + + + K T Sbjct: 227 PDELARIAAVLDSAEDQRAASIIRICMLTGARVGEVRTARFEQFNLDYVVWSKPASTTKQ 286 Query: 233 ITVELPDGFMKLLAMTPIGK------ETFFINNDKQKMNATQFSIWFKAKATKAGVN-KS 285 + +++A+ + + + + ++ A + Sbjct: 287 RKIHRVPISQEVVAIVRQRQLVVPKGNPWLFPGETVGQPVREIRRFWAKVQKDADLPDLH 346 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSRRISSVVD 344 H +R A++ GA+ + G + + Y D +R G+ + Sbjct: 347 IHDLRHTFASLLVSGGASLEMIGKLLGHSQMQTTQRYAHLMDSPLRAGVDTVASLLRPRP 406 >gi|254796806|ref|YP_003081643.1| site-specific recombinase, phage integrase family [Neorickettsia risticii str. Illinois] gi|254590046|gb|ACT69408.1| site-specific recombinase, phage integrase family [Neorickettsia risticii str. Illinois] Length = 307 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 42/276 (15%), Positives = 87/276 (31%), Gaps = 29/276 (10%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD--------YRKITTKHIRSGVESR 126 + + S + N+ +++ + F I K +R+ + SR Sbjct: 16 WTRWLGSVKC--FSSNTLVAYSRDTIAFLDFLSTFRGESVNCASLEGIDDKDLRAWLASR 73 Query: 127 K---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM---- 179 + + + + L+S++ F++ + + L V + R T +++ Sbjct: 74 RKNSISFRTNARALSSVKSFFRYLAKHNGIINEDVLGVVLRFKPNTLPRSLTFKEIIELI 133 Query: 180 --QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237 F + L SGLR S++ V L N K + L Sbjct: 134 EKFSFLKTGWIVKRNIALCYLLYGSGLRISEALSLTVADLANTEIK-IMGKGSRERMIRL 192 Query: 238 PDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHG 288 LA F++ + K+ T + F + + + + + H Sbjct: 193 LPIVRVALADYIASCPFQLDGGGFLFLDRNGNKLCRTAVAGAFLSIRRRFNLSNHITPHA 252 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT G ++ G ++ YTK Sbjct: 253 LRHSFATHLLQEGVGVRKIQELLGHASLASTAVYTK 288 >gi|167761886|ref|ZP_02434013.1| hypothetical protein BACSTE_00229 [Bacteroides stercoris ATCC 43183] gi|167700256|gb|EDS16835.1| hypothetical protein BACSTE_00229 [Bacteroides stercoris ATCC 43183] Length = 330 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 33/264 (12%), Positives = 82/264 (31%), Gaps = 14/264 (5%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESRK 127 + L++ + + + + + + ++++ ITT IR E + Sbjct: 53 EHLLNSFISAKKIEGCSDKTLAYYRNTIERLLVTL-SLAICHITTTDIRTYLSDYQEEHQ 111 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + + F W ++Y+A +P + + K + + E ++Q Sbjct: 112 SSKVTIDNMRRIFSSFFAWLEDEDYIAKSPVRRIHKVKTDSLVKEVLSDEQLEQ-LRDSC 170 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLA 246 + +FL +G+R + + + + + V L Sbjct: 171 TTKRDLAIIDFLSSTGIRVGELVKLNREDIDFHERQCVVFGKGNKERIVYFNARTKLHLQ 230 Query: 247 MTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299 G+ ++ ++ + I + + K H R+ AT++ D Sbjct: 231 QYLNGRTDDNPALFVSLHSPHTRLTISGVEIRIRKLGQSLSMPKVHPHKFRRTLATMAID 290 Query: 300 AGATAHELMATYGWKTVDQAETYT 323 G ++ G +D Y Sbjct: 291 KGMPIEQVQRLLGHVRIDTTLHYA 314 >gi|260663316|ref|ZP_05864207.1| integrase [Lactobacillus fermentum 28-3-CHN] gi|260552168|gb|EEX25220.1| integrase [Lactobacillus fermentum 28-3-CHN] Length = 373 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 41/376 (10%), Positives = 97/376 (25%), Gaps = 40/376 (10%) Query: 1 MTPSLRL-PPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE 59 M ++ P ++ + + + R G++ + T A + + Sbjct: 1 MAQIIKKGPSYMVR-------VTW--RDADGKQHKKSKSGFKTKAAARKA--GAEMESSK 49 Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119 Y + ++ + ++ + + + G I Sbjct: 50 YHGVLSTADPIFTDYYQNWYETYKHHQSSRATQDFYRYCINVVNDYFGRRKISTIDRATY 109 Query: 120 RSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 + + + H+ ++A + +RV K AV + + KT + Sbjct: 110 QRFLNDFGKSHSKNTASKMNAYVRVAVKNAVLDNVIPADFTEGTTIVWDKTRTRQVEYLN 169 Query: 178 DMQQFK------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG- 230 + + S G R +Y+G+R S+ L +I+ K+ Sbjct: 170 MEEINRLVALVKESLSPGFPVRYMILTAVYTGMRLSEIAALTWDDLNLPFKTIEISKSWD 229 Query: 231 -------------TIITVELPDGFMKLLAMTPIGKET-FFINNDKQKMNATQFSIWFKAK 276 + + + + L F D ++ + + Sbjct: 230 FKGRTFKDTKTKSSRRIIRVNQELLDCLVELKANGHDLVFARKDGSVCGSSSANRTLRLF 289 Query: 277 ATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADR-IRL 331 K ++K H +R G + + G + Y D Sbjct: 290 LDKLNLDKPGFHFHSLRHSHVAYLLANGVPLYAISKRLGHSNMTTTANRYAYLIDEFKAR 349 Query: 332 GIKNSRRISSVVDSDD 347 R + D Sbjct: 350 SDDQIERALVSLGVPD 365 >gi|120603820|ref|YP_968220.1| phage integrase family protein [Desulfovibrio vulgaris DP4] gi|120564049|gb|ABM29793.1| phage integrase family protein [Desulfovibrio vulgaris DP4] Length = 356 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 44/323 (13%), Positives = 97/323 (30%), Gaps = 14/323 (4%) Query: 16 TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE---YINSPRKKPTTLK 72 ++G FR R Y + +PR+ T L Sbjct: 6 KKNGTWYVAFRVAGEPHPRREYFGVGPHAHQQALIRDAEIKLQRVSGAAPAPRRGSTYLD 65 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK--HT 129 + Y + I + + I+ + I + V+ + T Sbjct: 66 AVAQAYIIDRKTAGASRRWLIEITGFLNNHILPALSTTPLDNLRYTDIIALVDKKWGNRT 125 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 ++ ++L ++ LF++ V + NP + K +R T E ++ + + Sbjct: 126 LATRQRYLGYLKALFRFGVEHGFTKNNPLSKWRKTKEPKRNLR-LTLEGLELILAHAAPH 184 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK---TQKTGTIITVELPDGFMKLLA 246 + L E+ + + ++ + +I T+ T+ + F L Sbjct: 185 LRWALEVEWEIGTRPGPTELFDLKWDDVDFERCTILVRGTKTHEANRTLPIMPEFRDRLQ 244 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304 + +I K K + + +AG+ + +R AT+ G+ Sbjct: 245 KVMREQGGEYIITYKGKPVLR-MNTALRGACRRAGLPYHVRMYDIRHLFATVMLANGSDL 303 Query: 305 HELMATYGWKTVDQAE-TYTKGA 326 + G T+ + Y Sbjct: 304 AAVSKLLGHSTIATTQAHYYHVL 326 >gi|37527448|ref|NP_930792.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens subsp. laumondii TTO1] gi|37527457|ref|NP_930801.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786883|emb|CAE15952.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786892|emb|CAE15961.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 376 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 53/317 (16%), Positives = 96/317 (30%), Gaps = 32/317 (10%) Query: 51 LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSG 107 L P P +L L+ + + + ++ + + G Sbjct: 11 LLTVDEVYRKPVGPAHDPKSLYALLLRFVVWRQERNWSESTLKVQTHHTYHFILWATERG 70 Query: 108 DFDYRKITTKHIRSGVESRKH---------TPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158 + IT + + + L ++V FKW +Q + NP Sbjct: 71 LYYAADITRPILERYQRYLYQYRKTNGEPLSTRTQRTQLEPLKVWFKWLTKQNLILANPA 130 Query: 159 LSVERPKRKTEGIRPW-----TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213 +E P+ + R T++ + Q +G + R E L +G+R + R Sbjct: 131 ADIELPRLEKHLPRYILTIDETEQILAQPDLTTLQGVRDRALMELLWSTGMRRGELTRLD 190 Query: 214 VQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM------- 264 V + +I+ K + L + + L I N K Sbjct: 191 VYSVDGKRKTVTIRQGKGNKDRVLPLGERALSWLQRYQQQVRPQLIVNPDVKALFVAMDG 250 Query: 265 ----NATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 A S A G+ K H R AT + GA + A G +V+ Sbjct: 251 LDGLQANGISNLVTAYINAVGIEKKGACHLFRHAMATQMLENGADLRWIQAMLGHASVES 310 Query: 319 AETYTKGADRIRLGIKN 335 + YT+ + R + Sbjct: 311 TQVYTQVSIRALQAVHA 327 >gi|319936220|ref|ZP_08010640.1| integrase/recombinase XerC [Coprobacillus sp. 29_1] gi|319808794|gb|EFW05327.1| integrase/recombinase XerC [Coprobacillus sp. 29_1] Length = 362 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 42/344 (12%), Positives = 101/344 (29%), Gaps = 42/344 (12%) Query: 14 ERTRHGKIIY---YFRKGHGRRIRL--PYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 + + + Y Y++ G RI+ +++ + + + Sbjct: 4 YKDNNTQTWYASFYYQNWKGERIKKMKRGFRTKREADEFIA--------KFKLEQAKDLD 55 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR- 126 + ++ Y + + N+ I+ + +I +I+ I Sbjct: 56 MNFEEFLNIYLRDLSNR-IKQNTMITKTYVIEDKIKPYFKLKKINEISPADIIEWQNELL 114 Query: 127 --------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-IRPWTKE 177 ++P + +F AV+ + NP ++ ++ WTKE Sbjct: 115 AYRDENGNPYSPCYLKTVHNQLSAIFNHAVKYYNLKNNPARIAGNMGKEKSKEMKFWTKE 174 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----- 232 + +F AFE L + GLR + +++ K+ Sbjct: 175 EYLKFSESMMRKDGVYQAFEMLYWCGLRLGEMLALTPGDFNFTKETVRINKSFQRIKGHD 234 Query: 233 -----------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 TV++P + + ++ + + + G Sbjct: 235 VITDPKTEKSNRTVQMPHFLAEEIHDYISRLYGIKRDSRIFHITKSGLHHEMDRGCKETG 294 Query: 282 VNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 V + H R ++ + G +A + G +++D Y Sbjct: 295 VKRIRLHDFRHSHVSLLIEMGFSAVAIADRVGHESIDITYRYAH 338 >gi|300772355|ref|ZP_07082225.1| integrase [Sphingobacterium spiritivorum ATCC 33861] gi|300760658|gb|EFK57484.1| integrase [Sphingobacterium spiritivorum ATCC 33861] Length = 413 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 48/309 (15%), Positives = 101/309 (32%), Gaps = 31/309 (10%) Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG------DFDYRKITTKHI 119 ++ TL L+ Y K LA + ++ + I + D ++ + I Sbjct: 109 EETMTLLKLVE-YHKQVAVSKLAPGTMKNYYTTETYIQKFIKQKYGKKDIPLDELNYRFI 167 Query: 120 RSGVESR-------KHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169 H P + + + +R + AV +++ +P + + + Sbjct: 168 LDFENFLNDYKPKDHHKPINNNGVMKHMERLRKMVNLAVTMDWLVRDPFAKYK-LRFEKV 226 Query: 170 GIRPWTKEDMQQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQN-----NI 221 +KE++ + + + F F Y+GL D +++ + Sbjct: 227 ERGHLSKEELTVLLNKSFSIERLQSVSDMFIFSCYTGLAYIDIFNLTPENISKGIDGKDW 286 Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 + K QKT T + V L LL ++ + + + K A G Sbjct: 287 LTTKRQKTDTTVRVPLLPEASDLLKKYRGHPVAEANGTIFPVISNQRMNGYLKEIAEICG 346 Query: 282 VNK--SAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338 +NK + H R AT G + G ++ + Y K + ++ + Sbjct: 347 INKNLTFHLARHTFATTVTLSNGVPIESVSKMLGHTSIRTTQIYAKVLEHK--LSEDMHK 404 Query: 339 ISSVVDSDD 347 + + S D Sbjct: 405 LEVRMASQD 413 >gi|116254396|ref|YP_770234.1| shufflon-specific DNA recombinase [Rhizobium leguminosarum bv. viciae 3841] gi|115259044|emb|CAK10154.1| putative shufflon-specific DNA recombinase [Rhizobium leguminosarum bv. viciae 3841] Length = 317 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 45/320 (14%), Positives = 102/320 (31%), Gaps = 23/320 (7%) Query: 32 RIRLPYPHESTFIPAYMSALTGSTPK-REYINSPRKKPTTLKWLISEYRKSAHWGSLAVN 90 + R + L + ++ + TTL L+ Y+ Sbjct: 2 KPRAKSFDSKAEAEKWARELESQVDRFGAAPDTKILETTTLGDLLKRYKIEVSP------ 55 Query: 91 SRISFESYFDQI----IRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLF 144 ++ +I + ++ + S + R + PS+A++ + + + Sbjct: 56 TKRGCVQEIQRIDVLERHEIAHRTLVGLSQPDVASFRDERLSSVAPSTAVREMAILSHVI 115 Query: 145 KWAVRQE--YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP--RLAFEFLL 200 + A+R ++ N V RP + E R ++ Q+ G P R + Sbjct: 116 EVAMRDWGFPLSRNVVKLVRRPVIRNERKRRLEGDEEQRLLDGCDGGKIPFMRTLLIVAI 175 Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND 260 +G+R S+ + +N I + T E+P A++ + + Sbjct: 176 ETGMRRSEILGLKWTDISHNRRVITLEMTKNGSGREVPMTQRAFDALSRWKENAPVEESM 235 Query: 261 KQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 + F ++ +A + H +R + + G E+ + G K + Sbjct: 236 VFPIAPGSFEQVWRRLLKRANIVGLRFHDLRHEGVSRLFERGLNVIEVSSISGHKELRML 295 Query: 320 ETYTKGADRIRLGIKNSRRI 339 + YT + R+ Sbjct: 296 KRYTHLS-----ADDLVARL 310 >gi|18310077|ref|NP_562011.1| integrase/recombinase [Clostridium perfringens str. 13] gi|18144756|dbj|BAB80801.1| probable integrase/recombinase [Clostridium perfringens str. 13] Length = 338 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 35/296 (11%), Positives = 90/296 (30%), Gaps = 48/296 (16%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRKH 128 ++ +Y + L + ++E + + D + +HIR+ ++ K Sbjct: 14 DILEDYMTDCKYRDLRRTTIRAYEQSLRLLFKFLEDDYKVIYVEDVKEEHIRNYIDFTKE 73 Query: 129 TPS----------------------------SAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 + +L ++++ F W + ++ +P Sbjct: 74 RGKYSYVANENNINSNVPQNRGDFGKKVSLCTLDNYLGNIKMFFTWCKDNKLISKDPSFK 133 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQH 216 ++R K + T ++ + + + + L+ +G+R + + Sbjct: 134 IKRIKYSRKAKAEITIDEFNKLLKSLDLTLFSEYRDYIVIQLLMDTGMRVGECLELREED 193 Query: 217 LQNNIFSIKTQ----KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA------ 266 + +I K V + ++L K+ + +N N Sbjct: 194 IDIRNKTIFISGEIAKGRRDRYVFFSNTMQRMLQKWLNYKDRYVESNYIFVTNRGGKYQV 253 Query: 267 TQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320 F + KA ++K + H +R A +G + L G + + Sbjct: 254 HSFEKHMRNYLKKAKIDKQITPHTLRNNFAKRFLMSGGDIYTLSRLLGHSDIRTTQ 309 >gi|253581707|ref|ZP_04858931.1| phage integrase [Fusobacterium varium ATCC 27725] gi|251836056|gb|EES64593.1| phage integrase [Fusobacterium varium ATCC 27725] Length = 357 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 44/330 (13%), Positives = 90/330 (27%), Gaps = 37/330 (11%) Query: 22 IYYFRK-GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK 80 YY G ++ + + + + + + Y + Sbjct: 16 FYYIDYQGKRKQKHKRGFRTKKEAEKW--------KREFLVKMTSDPTMSFQSMYDLYYE 67 Query: 81 SAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL-- 137 + + I+ E F+ I+ D IT IR S ++ Sbjct: 68 DLKVR-VKYITMINKEKIFNLHILPFFKDISVSDITPLTIREWQNKLLKKDYS-NSYIGG 125 Query: 138 --TSMRVLFKWAVRQEYVAINPCL---SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 + F +A++ + NP + K K E E + +F E Sbjct: 126 IQKYLNAFFNYAIKFHNLKSNPLKITGKAKLNKPKKEMEIWEPHEFEKFIGTFLKEDYLH 185 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----------------TQKTGTIITVE 236 R F L Y G R + + + +I+ + + V+ Sbjct: 186 RSFFSLLFYGGFRIGEVLALRLDDIDFKNSTIRVDETKTFVTKDAIINSPKTEKSNRVVD 245 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSAT 295 +P M++L + + + + KAG+ H +R + Sbjct: 246 MPLSVMEILKKHIKTLYGIENRDFIYSRHQSSIRNNLRRHLKKAGLKNIRIHDLRHSHVS 305 Query: 296 ISADAGATAHELMATYGWKTVDQA-ETYTK 324 + G ++ G TY+ Sbjct: 306 MLIHMGVNVVDIADRVGHDNPTTTLNTYSH 335 >gi|329848435|ref|ZP_08263463.1| phage integrase [Asticcacaulis biprosthecum C19] gi|328843498|gb|EGF93067.1| phage integrase [Asticcacaulis biprosthecum C19] Length = 397 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 64/372 (17%), Positives = 116/372 (31%), Gaps = 35/372 (9%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 V + + G YFRKG R L P + + + A+ + + K Sbjct: 14 KHVQRVKRAKGNTDLYFRKGDYREGPLSSPDGTQALKDEVDAILKRLEATSRAVA-KPKT 72 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128 TL +++Y +SA + +LA +++ ++ Y D++ GD IT I ++ Sbjct: 73 GTLAGALNDYNRSADFITLARSTQNGYQDYIDELTDDCGDVLLADITRSWIMELRDAWAV 132 Query: 129 TP-SSAIQFLTSMRVLF------KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 +A L ++ R + +V RP EG W +++ Sbjct: 133 RGYRAANMRLQLLKNALAPIIADDTDNRIKGDPFRSVENVRRPHDTPEGHPIWEDFEVEA 192 Query: 182 FKSFWSEGSQPRLAFEFLLY-----------SGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230 S P LA L + + L + T+K Sbjct: 193 AISAAITRKHPGLARAIALGRYGGFRKGTIITVPMRARVVGYNEDGLPERRINWITEKRK 252 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA---TKAGV----- 282 + + +L TP T N D + F +AG Sbjct: 253 VLADRREDERLTAVLDATPNRAYTLAYNADGMAWTSRALGHAFDRLMNSLARAGKVRADM 312 Query: 283 --------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334 + HG++ A + A+ +MA T A Y + A R + Sbjct: 313 DQDGELFCPLTIHGLKHSRGVELAQSNASDAGIMAQLDHATTRAAAIYRRQAQRRVMSDH 372 Query: 335 NSRRISSVVDSD 346 ++ +V + Sbjct: 373 AQDQVDNVRELR 384 >gi|307578024|gb|ADN53643.1| integrase [Staphylococcus aureus] Length = 381 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 42/361 (11%), Positives = 104/361 (28%), Gaps = 52/361 (14%) Query: 27 KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS 86 G +R + L + ++N+ TT K + + + + Sbjct: 29 TGKQKRTTRRGFKTEREAKIAEAKLQTEVSQNGFLNNDI---TTFKEVYELWLEQYQ-NT 84 Query: 87 LAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142 + ++ ++ + D +KIT + + + S Sbjct: 85 VREST---YQRVLTLFDTAILEHFQDVPIKKITVPYCQKVINKWNKKYSDIKAIRIYTSN 141 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEG----IRPWTKEDMQQFKSFWSEGSQPRLAFEF 198 +FK+AV + + NP + P++K + ++ ++++QF +F + F Sbjct: 142 VFKYAVSLKIIVDNPFAHTKAPRKKEAQQDASTKYYSSDELKQFLTFVEDDPLYYAIFRT 201 Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------------------------- 232 L ++G R + + + +I KT Sbjct: 202 LAFTGFRRGELMALTWKDIDFTKQTISINKTCARGANYKLIIQEPKTKSSHRTISIDDKT 261 Query: 233 ---ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--- 286 + ++ L + + N + S Sbjct: 262 ASVLKSWRTHQRVESLKYGHNTSDKHQHVFTTVRDNKPLYPEHCNKALDLICEKNSFKRI 321 Query: 287 --HGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVV 343 HG R ++ +AG + E+ G + Y ++ R + + + + + Sbjct: 322 KVHGFRHTHCSLLFEAGLSIQEVQDRLGHGDIKTTMDIYAHVTEKQR--DQVADKFAKYI 379 Query: 344 D 344 + Sbjct: 380 N 380 >gi|291544082|emb|CBL17191.1| Site-specific recombinase XerD [Ruminococcus sp. 18P13] Length = 362 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 54/360 (15%), Positives = 114/360 (31%), Gaps = 42/360 (11%) Query: 11 VTKERTRHGKIIY---YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67 V K +G Y R+ + + + + Sbjct: 3 VYKNSD-NGTWYVLARYLDWKGERKQKCKRGFSTRKEALEW-------ERTFQQQNASDM 54 Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR 126 T + YR L NS ++ E + +I+ G +I+ K I + Sbjct: 55 DMTFEAFYELYRNDMRPR-LKENSWMTKEHIVETKIMPYFGKRSLSEISNKDIMAWQNEL 113 Query: 127 ------KHTPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERP-KRKTEGIRPWTK 176 KH P S T + + AVR + NP V + + ++ WTK Sbjct: 114 LAYRDEKHKPYSQTYLKTVHNQLSAILNHAVRHYGLHCNPASKVGNMGTEERKEMKFWTK 173 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---- 232 E+ ++F + AFE L + G+R + + +++ K+ Sbjct: 174 EEYKKFSDEMMDKPVSFYAFEVLYWCGIREGELLALTPSDFDFDKGTLRINKSYQRLHGE 233 Query: 233 ------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280 T+++PD + + N+ ++ + + A Sbjct: 234 DVITTPKTKKSNRTIKMPDFLCEEMQDYLGMLYDVDKNDRIFNISKHYLGREMERGSKAA 293 Query: 281 GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 GV + H +R ++ D G +A + G ++++ Y + + ++++ Sbjct: 294 GVKRIRIHDLRHSHISLLIDMGFSAVAIADRVGHESIEITYRYAHLFPSKQ--EEMAKKL 351 >gi|189463345|ref|ZP_03012130.1| hypothetical protein BACCOP_04062 [Bacteroides coprocola DSM 17136] gi|189429964|gb|EDU98948.1| hypothetical protein BACCOP_04062 [Bacteroides coprocola DSM 17136] Length = 418 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 41/309 (13%), Positives = 95/309 (30%), Gaps = 18/309 (5%) Query: 45 PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESY--FDQI 102 Y +A + E + + +++ H S + + +++ +I Sbjct: 105 KEYDNAALYADTDAEQAEQLERSRSNFIEYFDHVQRTRHAHS-SDSIIVNWRRVHELLKI 163 Query: 103 IRKSGDFDYRKITTKHIRSGVESRKHTP-----------SSAIQFLTSMRVLFKWAVRQE 151 KS + +I K + S + + P ++A + + + K A Sbjct: 164 FAKSDTILFSQIDLKLVESFRQFIMNAPQGGTKRGTISQNTASTYFSIFKAGLKQAFIDG 223 Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCR 211 Y+ I+ V+ + + T E++ + + R A F +G+R D + Sbjct: 224 YLTIDIAAKVKGIQERESRREYLTIEELNRLAQTPCDPLLKRAA-LFSALTGIRHCDIQK 282 Query: 212 AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271 ++ + T + ++ + + + + Sbjct: 283 LKWSEVEQFNGGYRLNFTQQKTKGVEYMPISEQAYNLCGEQKEGELLVFAGLPDPSWINR 342 Query: 272 WFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 K AG+ K + H R AT+ G + + G V + Y K D Sbjct: 343 PVKKWVEAAGITKHITFHCFRHSYATLQLAGGTDIYTVSKMLGHTNVRTTQVYAKVVDEK 402 Query: 330 RL-GIKNSR 337 + + + Sbjct: 403 KEKATETIK 411 >gi|126661524|ref|ZP_01732572.1| Phage integrase [Cyanothece sp. CCY0110] gi|126617190|gb|EAZ88011.1| Phage integrase [Cyanothece sp. CCY0110] Length = 320 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 42/289 (14%), Positives = 93/289 (32%), Gaps = 31/289 (10%) Query: 80 KSAHWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVES-------RKHTP 130 S + L+ SR + + I GD D + +R + +K P Sbjct: 28 ASVYLSGLSEGSRRTIRYSLNTIASLLTNGDCDADTLDWSKLRYHHTAAVRVALLQKLAP 87 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI----RPWTKEDMQQFKSFW 186 +A + L+++R + A R +A + R +++ Sbjct: 88 VTANKMLSALRRVLLEAYRLGLMAADDYQKAVDFPNIQGSPELRGRSLDSTEIRALLGTC 147 Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVELPDG 240 E S + L +G+R S+ + ++ +++ + + K G V LP+ Sbjct: 148 GEDSVMDVRDAAIMVMLRGTGIRRSELVKLELRDFESSTGEVLVRKGKRGKSRRVYLPEE 207 Query: 241 FMKLLAMTP----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGV 289 + + + + +M++ + +A AG+ S H Sbjct: 208 AISYIQRWLGVRGEESGCLFCRIHRGGHLKLGQMHSDTVWRIIQKRAKMAGIESFSPHDF 267 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSR 337 R+ + DAG + G + Y + + R ++ + Sbjct: 268 RRTFCSDLLDAGVDIVTVQKLAGHSSPVTTAKYDRRGEETKRRAVQCLK 316 >gi|330470281|ref|YP_004408024.1| integrase family protein [Verrucosispora maris AB-18-032] gi|328813252|gb|AEB47424.1| integrase family protein [Verrucosispora maris AB-18-032] Length = 412 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 52/365 (14%), Positives = 89/365 (24%), Gaps = 51/365 (13%) Query: 20 KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79 + + G+ +P A + + P TT K E+ Sbjct: 32 RYRVRYIAPDGKEKSQSFPDRKKREAQAFLANVQADILKGTYVDPDAGRTTFKQYADEWL 91 Query: 80 KSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138 +A L +R E + G I IR + + S Sbjct: 92 AAATTDIL---TRDRIEYELRLHVYPVLGHKPMASIQPATIREWARRIQESGLSVGYRRV 148 Query: 139 S---MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195 + ++F AV + NP + + K R + + + R+A Sbjct: 149 LFTDVSMIFNAAVDDRKIVSNPFSAKSIRRPKPAPTRVVPWSVDRLAAFRENLPLRYRVA 208 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------TIITVELPDG 240 + GLR + + + + V LP Sbjct: 209 VDLGAGCGLRQGEIFAVSPGDIDPTRPVLHVTRQIKLVRGVLIFAPPKGGKSREVPLPSS 268 Query: 241 FMKLLAMTPIGKETFFINNDKQKMN--ATQF------------------SIWFKAKATKA 280 L + + + S +K Sbjct: 269 VAGRLRKHAQDCQPVAVTLPWGSLTGEPRTVELYLTNPAGTALTRSMFNSGVWKPAVRAT 328 Query: 281 GVNK----SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK----GADRIRL 331 G+ H +R A++ DAG + L A G TYT DR R Sbjct: 329 GIPDDRHNGMHVLRHTYASVLLDAGESIKALSAYLGHADPGFTLRTYTHLLPASEDRTRR 388 Query: 332 GIKNS 336 I + Sbjct: 389 AIDRA 393 >gi|221369889|ref|YP_002520985.1| Phage integrase [Rhodobacter sphaeroides KD131] gi|221162941|gb|ACM03912.1| Phage integrase [Rhodobacter sphaeroides KD131] Length = 434 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 39/328 (11%), Positives = 84/328 (25%), Gaps = 38/328 (11%) Query: 52 TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFD 110 G P E + LI Y K LA S +S ++ G Sbjct: 93 AGGDPLGERSRRREAPR--FQDLIDRYLKEHVPR-LAPVSAADQKSMLAKLVAPYWGRKL 149 Query: 111 YRKITTKHIRSGVESR----------------------KHTPSSAIQFLTSMRVLFKWAV 148 +IT + + K TP A + +R +F A+ Sbjct: 150 VTEITKPDVEKLLAQIAEGRARPSKAKPNNRARKLQGPKPTPVRANRVGEVLRKMFNLAI 209 Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA--FEFLLYSGLRC 206 + NP + + R +K+++ + R A + +G R Sbjct: 210 EWGWRTDNPANGF-FRRIENPRERFLSKDEIDRLAKALDAAEDQRAAGIIRICMLTGARV 268 Query: 207 SDSCRAGVQHLQNNIFSIKTQ---KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK 263 + ++ + + + + Sbjct: 269 GEVRQSRFEQFDLEHCLWSKPAATTKQRRVHRVPISEDVSAIVRQRRLLVPKGSPWLFPG 328 Query: 264 MNA----TQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 + ++ +A + H +R A++ GA+ + G + Sbjct: 329 DVPGQPVKEIRRFWIRIQKEAQIEGVRIHDLRHTFASLLVSGGASLEMIGKLLGHTQMQT 388 Query: 319 AETYTKGAD-RIRLGIKNSRRISSVVDS 345 + Y + +R G+ + + Sbjct: 389 TQRYAHLMEGPLRAGVDAVASVFRPKPT 416 >gi|134102479|ref|YP_001108140.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338] gi|133915102|emb|CAM05215.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338] Length = 325 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 38/318 (11%), Positives = 85/318 (26%), Gaps = 39/318 (12%) Query: 61 INSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESY----FDQIIRKSGDFD-YRKI 114 + P + + + + L+ ++ ++ D + + Sbjct: 15 RKARDGLPGPVGAAVDGFERHLKAERGLSAHTVRAYIGDVVSLLDHFCAGDEERKGLNGL 74 Query: 115 TTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 +R + ++ + S+ + S R WA R E + +P + P K + Sbjct: 75 GLTVLREWLAAQHADGASRSTLARRAASARTFTAWAHRAELLPHDPGPRLAAPAPKRKLP 134 Query: 172 RPWTKEDMQQFKSFWSEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223 E + S G + E L +G+R S+ C + + + Sbjct: 135 TVLRAEQAKSAMSASQAGAEQGDPIALRDHAVVELLYATGVRVSELCGLDLDDVDHERRV 194 Query: 224 IKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM----------NATQFSIW 272 ++ V ++ + + Sbjct: 195 VRVIGKGDKERAVPFGVPAEDAVSRWISAGRPELATDASGPALFLGARGGRLDPRAVRRV 254 Query: 273 FKAKATKAG--VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 + HG+R +AT + GA + G T+ + YT Sbjct: 255 VHDAVGAVSGATDVGPHGLRHSAATHLLEGGADLRSVQELLGHATLATTQLYTHVT---- 310 Query: 331 LGIKNSRRISSVVDSDDP 348 R+ ++ D P Sbjct: 311 -----VERLKAIHDRTHP 323 >gi|153000209|ref|YP_001365890.1| phage integrase family protein [Shewanella baltica OS185] gi|151364827|gb|ABS07827.1| phage integrase family protein [Shewanella baltica OS185] Length = 287 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 39/267 (14%), Positives = 84/267 (31%), Gaps = 21/267 (7%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRK 127 L+ ++ + +R ++ Q+ + + IT + + + R Sbjct: 2 SSLLQQFHDEISLRGYSARTRSAYLRAITQL-QHYANQPLDSITDEQLTAYFRYLNLERH 60 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 H+ ++ L + ++ + +++ PKR + + + +D+ Sbjct: 61 HSRATLKLQLNGIHFFYEHVLGRDFTVQLSL-----PKRPHKLPQLLSCQDIAALLCHCQ 115 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLL 245 + R GLR S+ V + +K + V + + LL Sbjct: 116 -NLKQRAMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGKGAYDRLVIISPTLLTLL 174 Query: 246 AMTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297 ++ ++ + F A AG+ S H +R AT Sbjct: 175 RQYWRAYHPVEWLFASTYHDVVYPLHESTFRKALAKAARLAGITKPCSPHSLRHAYATHQ 234 Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324 AG H+L A G ++ E Y Sbjct: 235 LQAGMPLHQLQAQLGHHSIKSTERYLH 261 >gi|52079825|ref|YP_078616.1| lambda integrase-like protein(phage related) [Bacillus licheniformis ATCC 14580] gi|52785195|ref|YP_091024.1| hypothetical protein BLi01428 [Bacillus licheniformis ATCC 14580] gi|52003036|gb|AAU22978.1| Lambda integrase-like protein(phage related) [Bacillus licheniformis ATCC 14580] gi|52347697|gb|AAU40331.1| putative protein [Bacillus licheniformis ATCC 14580] Length = 379 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 59/363 (16%), Positives = 124/363 (34%), Gaps = 45/363 (12%) Query: 12 TKERTRHG-KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN--SPRKKP 68 + +T+ G K ++ G + A+ + ++ I+ + + Sbjct: 5 QQYKTKTGYKWLFKMGVGIDPKTGNRKTTTRRGFKTKKEAVAAAAEFQKEIDNNALARND 64 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK 127 T + + E+ H ++ ++R S F I+ G + IT + + + Sbjct: 65 ITFEDVFKEWWD-VHSKTIKRSTRYRKLSNFKKHILPHFGKLKIKDITRAYCQKVINLIA 123 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-------RKTEGIRPWTKEDMQ 180 S ++FK+A+R EY+ NP V PK ++ E W K++++ Sbjct: 124 QDIDSVQNVKIQANLVFKYALRMEYITKNPMEFVVIPKKEENFLSQEEEKRNFWEKDEIK 183 Query: 181 QFKS--FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----------------QNNIF 222 F Q + F L+++G+R + + + Sbjct: 184 TFLEKAHSQLAPQDYVMFYVLIFTGMRKGELIALEWKDVDLKEKTINIKQTMFFENGKEV 243 Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF-------------INNDKQKMNATQF 269 T+K + + + D ++L ++ I D + + Sbjct: 244 IQTTKKYHSKRIITIDDQTAQILKKWRTQQKEMLLSNGITSEAKYVLIRGDMRPLRLAYP 303 Query: 270 SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGAD 327 + TK +++ + HG R A+I +AGA+ E+ A G K + YT Sbjct: 304 NDLLNRMITKNKLHRITIHGFRHSHASILFEAGASIKEVQARLGHKEIQTTMNIYTHVTK 363 Query: 328 RIR 330 + Sbjct: 364 TAK 366 >gi|319641868|ref|ZP_07996545.1| transposase [Bacteroides sp. 3_1_40A] gi|317386541|gb|EFV67443.1| transposase [Bacteroides sp. 3_1_40A] Length = 407 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 44/319 (13%), Positives = 104/319 (32%), Gaps = 24/319 (7%) Query: 33 IRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY---RKSAHWGSLAV 89 IRL + A++ + + TL + E+ +A Sbjct: 73 IRLRIMKIQRELEIEGVAVSAGSVLDRFWGKDAPVQRTLFEVFREHNDKCARLSGTDMAP 132 Query: 90 NSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVESRKHT----PSSAIQFLTS 139 + +E+ D +++ + + K + ++A ++L + Sbjct: 133 ATVQRYETSLKHTQDFVWETYHKKDILLDEVSRQFVEDYEFWLKTSKKCCHNTATKYLKN 192 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAF 196 + + + A+ + ++ +P L + ++++ S + + R F Sbjct: 193 FKKIIRIALAKGWMKNDPFLEIRF-SLDKVEPDFLEDSEIRKLISKEIDIPRLGQVRDIF 251 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD-----GFMKLLAMTPIG 251 F ++GL SD G +H+ + ++ + G T + + +K+L Sbjct: 252 VFCCFTGLAFSDIHGLGKEHIVEDSNGVRWIRKGRQKTKIMCNIPLMEVPLKILEKYSTN 311 Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMA 309 + + + + + K A G+ K+ H R AT + G + + Sbjct: 312 EYCRKHGVLFPVLCNQKMNAYLKELADICGIKKTLTTHVARHTFATFALANGVSIESVAK 371 Query: 310 TYGWKTVDQAETYTKGADR 328 G V Y + DR Sbjct: 372 MLGHTNVQMTRHYARVLDR 390 >gi|309812717|ref|ZP_07706461.1| site-specific recombinase, phage integrase family [Dermacoccus sp. Ellin185] gi|308433412|gb|EFP57300.1| site-specific recombinase, phage integrase family [Dermacoccus sp. Ellin185] Length = 388 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 36/323 (11%), Positives = 86/323 (26%), Gaps = 21/323 (6%) Query: 15 RTRHG---KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 R+G + +R+ G + ++ +++ P ++ T+ Sbjct: 21 TDRYGVGLRYRARYRREKGGKQFSKGFATKREAKEWLQLKASEIHTGTWVD-PARERMTV 79 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 + + S ++ E++ I GD R + + + V + + Sbjct: 80 GEWCETWLA--GYSSRKASTYRQAETHVKIIRATFGDVPVRSVKPSDVNAWVATMQRDGR 137 Query: 132 SAIQFLTSMRVLFKWAVRQEY---VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + + R + + + +PC P + + T + + E Sbjct: 138 AQSYVYATYRRFAQIMGDAVHDGLIHRSPCSRRTAPSQGEQRPYVATSAQVWALHDKFPE 197 Query: 189 GSQPRLAFEFLLYSGLRCSD---------SCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239 +P + L +Q +KT + T + + Sbjct: 198 HLRPAVLLAAFAGLRLAECAGLRAADVDFMRGIVTPAVQYPAEPLKTDYSRTPVPIPNDL 257 Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA---TKAGVNKSAHGVRKFSATI 296 M A+ E N ++ + H +R + A++ Sbjct: 258 SLMLAKAVEGGAGEYVVTNEIGRQATPWAIERAMREVRGSVEDLPEGFRFHDLRHYYASL 317 Query: 297 SADAGATAHELMATYGWKTVDQA 319 AG + A K Sbjct: 318 LISAGLDVKIVQARMRHKNATTT 340 >gi|262068300|ref|ZP_06027912.1| integrase/recombinase, phage integrase family [Fusobacterium periodonticum ATCC 33693] gi|291377988|gb|EFE85506.1| integrase/recombinase, phage integrase family [Fusobacterium periodonticum ATCC 33693] Length = 329 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 32/263 (12%), Positives = 84/263 (31%), Gaps = 14/263 (5%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS- 131 + + + H + S +++ + + +K D + ITT +R +++ + + Sbjct: 53 EYLEAFLSAKHVEGCSRKSLKYYKATIENLFKKI-DKSIKHITTNDLREYLDNYQKEGNA 111 Query: 132 ---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + F W ++Y+ +P + + K T ++ E M+ + + Sbjct: 112 SKITIDNIRRIFSSFFAWLEEEDYILKSPVRRIHKVKTGTVVKETYSDEAMEIMRD-NCK 170 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAM 247 + + L +G+R + + ++ + V L Sbjct: 171 SLRDLAIIDILASTGMRVGELVKLNIEDIDFEGRECVVFGKGDKERKVYFDARTKIHLHN 230 Query: 248 TPIGKETFFIN------NDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADA 300 ++ +++ + I + K + H R+ AT + D Sbjct: 231 YLKTRDDDNSALFVSLLKPHKRLQISGVEIMLRQLGRKLNITKVHPHKFRRTLATKAIDK 290 Query: 301 GATAHELMATYGWKTVDQAETYT 323 G ++ G + +D Y Sbjct: 291 GMPIEQVQQLLGHQKIDTTLQYA 313 >gi|315029961|gb|EFT41893.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX4000] Length = 408 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 51/398 (12%), Positives = 110/398 (27%), Gaps = 72/398 (18%) Query: 11 VTKERTRHGKIIYYFRKGHGR--------RIRLPYPHESTFIPAYMSALTGSTPKREYIN 62 + + ++G+ + + +GR +I + G E++ Sbjct: 4 IKSYKLKNGQERWEYFVSNGRNNGTGRQQKIHKRGFRTHKEALKAAKIIEGQIASEEFVK 63 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRS 121 + T+ ++ + ++ SRI + I G++ K + Sbjct: 64 -ENSQKMTISKFMNIWINEYK-NNVKEGSRIVYRDAIRMYIDPYIGNYQLNKYKPADHQK 121 Query: 122 GVESR-----------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP------ 164 + S + ++ ++ FK A + YV NP VE P Sbjct: 122 FINSLFTNKELGKNKNGLSYNTVKIVNAALSNAFKKAQKLGYVKSNPTYLVEFPLDKVKE 181 Query: 165 ---KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221 K K +E++ + + + F + GLR + + Sbjct: 182 KTNKEKKLEFYTLEQENLFLDTARNFDDFMWYVFFLIIFDLGLRKGEVMALRWFNFDFRD 241 Query: 222 FSIKTQKTGTIITVELPDGFMK----------------------------------LLAM 247 + K + + +L M Sbjct: 242 NILTFDKQRLYRKEQPGQVILDDVKTDAGKRSLKMTNRVRNSVLELYSINYDLTSNVLPM 301 Query: 248 TPIGKETFFINNDKQ----KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGA 302 T ++ FIN+ + + + KA + K H R +A AG Sbjct: 302 TNSNQDFLFINHRGKNVGLPIRQRSVDTAWHRIIQKANLPKIRIHDGRHTNAARLRQAGV 361 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 ++ G K V E Y + ++ + ++ Sbjct: 362 PLEDIKDMLGHKNVKTTEIYAHVSPEVK--ERAVNKLE 397 >gi|289704735|ref|ZP_06501158.1| site-specific recombinase, phage integrase family [Micrococcus luteus SK58] gi|289558545|gb|EFD51813.1| site-specific recombinase, phage integrase family [Micrococcus luteus SK58] Length = 381 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 60/374 (16%), Positives = 115/374 (30%), Gaps = 47/374 (12%) Query: 11 VTKERTRHGK-IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 V K T+ G +R A+ +++ S + E+I + Sbjct: 4 VEKYVTKAGTLWKVRYRTPRRTTTEKRGFRTKRDAEAFAASVEVSKLRGEFIEAG-AARA 62 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR-- 126 T+ L + + G L ++ ES ++ + G ++ T ++ + Sbjct: 63 TVGALAGPWVQ--RQGHLKPSALRPVESALRVHVLPRWGSIPVAEVRTTDVQQWITDLSR 120 Query: 127 ----------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + ++ + + + AV + NP V+ PKR + + Sbjct: 121 GRPEATPPTSGRSATTVARCFGVLAAILDDAVADRRIVTNPARGVKLPKRTPKPRVYLSH 180 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----------- 225 E + ++ S+ L Y+GLR ++ V+HL IK Sbjct: 181 EQVH----AFARASKYPTLVLVLAYTGLRWGEASALRVRHLDMLRRRIKVEENAVDVGGV 236 Query: 226 ----TQKTGTIITVELPDGFMKLLAMTPI-------GKETFFINNDKQKMNATQFSIWFK 274 T KT + V P LA W+ Sbjct: 237 VHVGTPKTHRVRVVPFPRFLGDALAAQCEGKGRDELVFPGPGGGYMSPARVHEGHGSWWG 296 Query: 275 AKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLG 332 A A V + + H +R +A+ + AGA + G + + Y D Sbjct: 297 AAVRAADVPRVTPHDLRHTAASFAVSAGANVKAVQRMLGHASAAMTLDVYADLFDEDLNA 356 Query: 333 IKNSRRISSVVDSD 346 + + R+ +VV Sbjct: 357 V--ADRLDAVVAER 368 >gi|198277079|ref|ZP_03209610.1| hypothetical protein BACPLE_03287 [Bacteroides plebeius DSM 17135] gi|198269577|gb|EDY93847.1| hypothetical protein BACPLE_03287 [Bacteroides plebeius DSM 17135] Length = 418 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 40/309 (12%), Positives = 93/309 (30%), Gaps = 18/309 (5%) Query: 45 PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESY--FDQI 102 Y +A + E + + +++ H S + + +++ +I Sbjct: 105 KEYDNAALYADTDAEQAEQLERSRSNFIEYFDHVQRTRHAHS-SDSIIVNWRRVHELLKI 163 Query: 103 IRKSGDFDYRKITTKHIRSGVESRKHTP-----------SSAIQFLTSMRVLFKWAVRQE 151 K + +I K + S + + P ++A + + + K A Sbjct: 164 FAKGDTILFSQIDLKMVESFRQFIMNAPQGGTKRGTISQNTAATYFSIFKAGLKQAFIDG 223 Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCR 211 Y+ I+ V+ + + T E++ + + R A F +G+R D + Sbjct: 224 YLTIDISAKVKGIQERESRREYLTVEELNRLAQTPCDPLLKRAA-LFSALTGIRHCDIQK 282 Query: 212 AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271 ++ + T + + + + + + Sbjct: 283 LKWSEVEMFNGGYRLNFTQQKTKGVEYMPISEQAYNLCGEPKEGELLVFAGLPDPSWINR 342 Query: 272 WFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 K AG+ K + H R AT+ G + + G V + Y K D Sbjct: 343 PVKKWIEAAGITKHITFHCFRHSYATLQLAGGTDIYTVSKMLGHTNVRTTQVYAKVVDEK 402 Query: 330 RL-GIKNSR 337 + + + Sbjct: 403 KEKATETIK 411 >gi|28895789|ref|NP_802139.1| integrase (phage associated) [Streptococcus pyogenes SSI-1] gi|28811038|dbj|BAC63972.1| putative integrase (phage associated) [Streptococcus pyogenes SSI-1] Length = 303 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 42/283 (14%), Positives = 82/283 (28%), Gaps = 24/283 (8%) Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128 T L ++ K + + I+ K I I+ E + Sbjct: 1 MTFGALTDQWLKEYEKTVQCSTYLKTERNINKHILPKLDKVKIGDINPLLIQRLTEEWCN 60 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-----IRPWTKEDMQQFK 183 + L +R + AVR Y+ NP L + PK K + + Sbjct: 61 DLKYGGKILGLVRNILNLAVRYGYINNNPALPITPPKIKRKRKMNNNFYTLDQLKQFLEL 120 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--------------FSIKTQKT 229 ++ + F L ++G+R + L N T+ Sbjct: 121 VEKTDNIEKIALFRLLAFTGIRKGELLALTWDDLNGNTLSINKAVTRTQVGLEIDVTKTK 180 Query: 230 GTIITVELPDGFMKLL---AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-S 285 + + L D +++L T F + M + W + + + Sbjct: 181 SSDRLISLDDETLEILLELHETFPTSTLMFQSESGGIMTPSLPRKWLLQIIKGTDLPQIT 240 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGAD 327 HG R A++ ++G + ++ G + YT Sbjct: 241 IHGFRHTHASLLFESGLSLKQVQHRLGHGDLQTTMNVYTHITQ 283 >gi|228990374|ref|ZP_04150339.1| Integrase/recombinase [Bacillus pseudomycoides DSM 12442] gi|228768900|gb|EEM17498.1| Integrase/recombinase [Bacillus pseudomycoides DSM 12442] Length = 306 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 32/281 (11%), Positives = 75/281 (26%), Gaps = 29/281 (10%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGVESRK 127 LK+ + ++++ + +L+ + S+ + + + + R I ++S + + Sbjct: 3 LKFAMKDFKEEKEFANLSPRTIQSYMATLHEFQEFCSERELIDTRDIREATVKSYLMYCQ 62 Query: 128 HTPS----SAIQFLTSMRVLFKWAVRQEYVAINPCLSVER----------PKRKTEGIRP 173 T + L +++ F + ++ ++ + + + Sbjct: 63 KTRGNNVVTRNTKLHHLKIFFNYLQHEDIISEKENPIRKMKLAKEDIKIEVFQDEHIKQM 122 Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233 + ++ + FLL +G R + L ++ Sbjct: 123 LRYYRRLKTRNKSFYAYRDHTIIIFLLGTGSRLGELINIRWSELDLVNQTVTLFGKARKQ 182 Query: 234 ------------TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 E + L P T + K + Sbjct: 183 QTVPLTNKLVKEFCEYKVFMERELGRLPEYVFTTREGKQMSPNSVKLIFKRLKQVMNFSD 242 Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 V SAH R A AG L + E Y Sbjct: 243 VRLSAHTFRHTFAHRCLMAGMDVFTLQRMLRHSNLRMTERY 283 >gi|322387050|ref|ZP_08060661.1| phage integrase family site-specific recombinase [Streptococcus infantis ATCC 700779] gi|321142037|gb|EFX37531.1| phage integrase family site-specific recombinase [Streptococcus infantis ATCC 700779] Length = 377 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 50/376 (13%), Positives = 112/376 (29%), Gaps = 60/376 (15%) Query: 11 VTKERTRHGKIIYYFRKG----HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 +T +T+ GK G +RIR+ + A L E Sbjct: 1 MTIRKTKSGKWTVDVSNGFHPVTQKRIRIIRKGLKSKKEA--LELEQHIRIVELKEKQFD 58 Query: 67 KPTTLKWLISEYRKSAHWGSLAV----NSRIS-FESYFDQIIRKSGDFDYRKITTKHIRS 121 T L + + +++ + +E I D + K+T HI Sbjct: 59 FVVTTDMLFDL-LEEDDLKNGRKISYTSTQRNNYER---HIKPYFKDTNLNKLTYDHIFE 114 Query: 122 GVESRKHTP-----------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170 E K P ++ + L ++ +F +R+ + NP ++ + + Sbjct: 115 FREYLKTKPKKQNENETLSYNTINKILILLKKIFDTGIRKSLIDKNPVENLRKLPIRKPN 174 Query: 171 IRPWTKEDMQQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAGVQ-------------- 215 I+ W+ E+ +F+ + L F ++G+R + Sbjct: 175 IKFWSIEEFTRFRELIQDDEISYDLFFVIAFFTGMRMGEILALNWNDIDLLTNTIYVTKT 234 Query: 216 --HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET------------FFINNDK 261 + N + T+ + + ++L + ++ I + Sbjct: 235 VYFVNNTSYINTTKTRSGTRNITINQKLAEMLKDWKVKQKEKLEEFTKNTEELQIIQSTP 294 Query: 262 QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 + FK + H +R A++ + G + G ++ Sbjct: 295 ITITKNMIDKKFKQILERDKDLKKIRIHDLRHSHASLLINQGEDYLVVKERLGHASITTT 354 Query: 320 -ETYTKG--ADRIRLG 332 +TY+ + + L Sbjct: 355 IDTYSHLYPSKQKTLA 370 >gi|184154936|ref|YP_001843276.1| integrase [Lactobacillus fermentum IFO 3956] gi|183226280|dbj|BAG26796.1| integrase [Lactobacillus fermentum IFO 3956] gi|299782969|gb|ADJ40967.1| Integrase [Lactobacillus fermentum CECT 5716] Length = 373 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 41/376 (10%), Positives = 97/376 (25%), Gaps = 40/376 (10%) Query: 1 MTPSLRL-PPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE 59 M ++ P ++ + + + R G++ + T A + + Sbjct: 1 MAQIIKKGPSYMVR-------VTW--RDEDGKQHKKSKSGFKTKAAARKA--GAEMESSK 49 Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119 Y + ++ + ++ + + + G I Sbjct: 50 YHGVLSTADPIFTDYYQNWYETYKHHQSSRATQDFYRYCINVVNDYFGRRKISTIDRATY 109 Query: 120 RSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 + + + H+ ++A + +RV K AV + + KT + Sbjct: 110 QRFLNDFGKSHSKNTASKMNAYVRVAVKNAVLDNVIPADFTEGTTIVWDKTRTRQVEYLN 169 Query: 178 DMQQFK------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG- 230 + + S G R +Y+G+R S+ L +I+ K+ Sbjct: 170 MEEINRLVALVKESLSPGFPVRYMILTAVYTGMRLSEIAALTWDDLDLPFKTIEISKSWD 229 Query: 231 -------------TIITVELPDGFMKLLAMTPIGKET-FFINNDKQKMNATQFSIWFKAK 276 + + + + L F D ++ + + Sbjct: 230 FKGRTFKDTKTKSSRRIIRVNQELLDCLVELKANGHDLVFARKDGSVCGSSSANRTLRLF 289 Query: 277 ATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADR-IRL 331 K ++K H +R G + + G + Y D Sbjct: 290 LDKLNLDKPGFHFHSLRHSHVAYLLANGVPLYAISKRLGHSNMTTTANRYAYLIDEFKAR 349 Query: 332 GIKNSRRISSVVDSDD 347 R + D Sbjct: 350 SDDQIERALVSLGVPD 365 >gi|30250123|ref|NP_842193.1| integron integrase [Nitrosomonas europaea ATCC 19718] gi|30139230|emb|CAD86100.1| Integron integrase; Phage integrase; Phage integrase N-terminal SAM-like domain [Nitrosomonas europaea ATCC 19718] Length = 323 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 36/305 (11%), Positives = 75/305 (24%), Gaps = 52/305 (17%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS-S 132 L+ + R ++ + + + + I G +++ + + + S Sbjct: 10 LLDQVRDRIRIKHYSLRTETQYVQWIKRFILFHGKRHPQEMGAAEVEAFLTHLAVVGKVS 69 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 A ++ L + + V R K+ T+ ++Q Sbjct: 70 ASTQNQALSALLFLYKEVLSIDLPWLDKVVRAKQPQRLPVVLTRTEVQAILVRM--SGTY 127 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIF------------------------------ 222 L L +G+R + R V+ + Sbjct: 128 GLMANLLYGTGMRLMECVRLRVKDVDFERGEILIRDGKGAKDRVTILPESLVSPLQTYLL 187 Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF------------- 269 + I + L T +I + Sbjct: 188 QRRVLFDDDIRLGKASVYLPDALERKYPNAATDWIWQYIFPSGSFSIDPRSSVERRHHID 247 Query: 270 ----SIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 K +G+ K + H +R AT D+G + G K V YT Sbjct: 248 EKLLQRAMKKAVQTSGITKLATPHTLRHSFATHLLDSGYDIRTIQELLGHKDVHTTMIYT 307 Query: 324 KGADR 328 ++ Sbjct: 308 HVLNK 312 >gi|282601462|ref|ZP_05981764.2| putative phage integrase [Subdoligranulum variabile DSM 15176] gi|282568976|gb|EFB74511.1| putative phage integrase [Subdoligranulum variabile DSM 15176] Length = 385 Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 50/345 (14%), Positives = 90/345 (26%), Gaps = 46/345 (13%) Query: 19 GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78 GK R I +P I Y+ A KR + T + + Sbjct: 24 GKKRMQART-----IDVPKEIPKRSIRQYVYAEAERLEKRFRTGIDESENTKFEAYAEHW 78 Query: 79 RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS------- 131 ++ + + G KI + E + P Sbjct: 79 LD-RAAKRYKASTLAGYRKMLELAYPFIGGLPLCKIRPMVLEGFAEELRKRPGRGGKPLS 137 Query: 132 --SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + ++L ++ + + A + + + NP VE+P++ P E + + E Sbjct: 138 ENTVHKYLDAVSAVLQDAAKNDILLYNPAHRVEKPQQ----RIPQQWEMRKLLQCLLQEP 193 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ---------------KTGTIIT 234 R+ + L +GLR + C L K Sbjct: 194 LLYRVFYLMALSTGLRRGELCALRWCDLHGGNQVKIQHSRSTVVGQGVLESDTKNHRTRI 253 Query: 235 VELPD---------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-- 283 V +P + L + ++ FS + + G Sbjct: 254 VVMPQIVFDDLGELFTEQALENNGADWNGLIFQRKGKPIHPDSFSRHLRHLYDQNGFPEE 313 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKGAD 327 H +R F AT + G + G E Y D Sbjct: 314 YHLHTMRHFFATYLLEHGTSKQVAADLLGHADTAFLERTYCHPQD 358 >gi|218782611|ref|YP_002433929.1| integrase family protein [Desulfatibacillum alkenivorans AK-01] gi|218763995|gb|ACL06461.1| integrase family protein [Desulfatibacillum alkenivorans AK-01] Length = 409 Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 50/372 (13%), Positives = 99/372 (26%), Gaps = 56/372 (15%) Query: 20 KIIYYFRKGHGRRIRLPYPH------ESTFIPAYMSAL--------TGSTPKREYINSPR 65 +I Y F + G++I + + Sbjct: 29 RIYYIFYRKDGKQIEEKAGRQYQDDMTPARAAGIRAQRIQGKEATNEERREEVRAAKEAE 88 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 TL + EY+ V + +ESY GD +I + + Sbjct: 89 AGRWTLDRIWEEYKAQRPDLKGIVTDQNRYESYLQ---PVFGDKTPSEIQQLEVDRLRIN 145 Query: 126 RKHTPS-------------------------SAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 P + L +R + + ++ + Sbjct: 146 MLTKPRKPPRFRNGKRMEKPKNGKLPPLTPQTVKNTLEILRRIINFG-ERKGLCEGLGFK 204 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQ 218 + PK T + ++ E + +A + LYSG+R + + H+ Sbjct: 205 ITFPKVDNTKTEDLTPDQLRDLLKAIDEATNTEVAAIMKMALYSGMRRGELLKLQWDHVD 264 Query: 219 NNI-FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277 F G + + L ++ ++ K Sbjct: 265 FERGFIHIVDPKGGASQKVPLNDASRALLENRSRTDSPYVFPGKGGKQRVCIRHEANKIK 324 Query: 278 TKAGVNKSA---HGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 KAG+ K HG+R A++ A +G + L K+ + Y D Sbjct: 325 EKAGLPKDFRAMHGLRHTYASMLASSGKVDMYTLQKLLTHKSPQMTQRYAHLRD------ 378 Query: 334 KNSRRISSVVDS 345 ++ S++ S Sbjct: 379 DALKQASNLAGS 390 >gi|57234825|ref|YP_181071.1| phage integrase family site specific recombinase [Dehalococcoides ethenogenes 195] gi|57225273|gb|AAW40330.1| site-specific recombinase, phage integrase family [Dehalococcoides ethenogenes 195] Length = 336 Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 34/287 (11%), Positives = 81/287 (28%), Gaps = 8/287 (2%) Query: 58 REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117 + K T L + Y + N + +++ D+ G + Sbjct: 3 EKTKRRLSHKKLTTDELFTGYYDLLKIR-ITPNQYLQYKALLDKFQAFLGGMPPSQALAL 61 Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 R ++ ++ +R W + + P+ + Sbjct: 62 KFLGLYHHRAQ--ATIFRYTGIIRGFMDWYGE--GLDVKVKKPKHLPEYVEPADIEKLVD 117 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237 + + ++ + F +GLR S+ V +Q + + G + Sbjct: 118 AITCKHNHKDTIARDEMLIRFAQMTGLRRSELANLKVSDIQLEKRT-VFVRQGKGMKDRA 176 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATIS 297 + L++ ++ + + + + KAGV H +R A Sbjct: 177 VPIPLGLISKLTSFLAHKQPSDSLFNLTSRSITDKLSTWSKKAGVKIHPHQLRHSYAEQL 236 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 + GA + A G +++ Y R + ++ V Sbjct: 237 LEKGAALTSVQALLGHESLQTTSVYLGI--RPNALREAVDKLDMVKP 281 >gi|78184009|ref|YP_376444.1| site-specific recombinase XerD-like [Synechococcus sp. CC9902] gi|78168303|gb|ABB25400.1| Site-specific recombinase XerD-like [Synechococcus sp. CC9902] Length = 291 Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 36/279 (12%), Positives = 79/279 (28%), Gaps = 29/279 (10%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIR----KSGDFDYRKITTKHIRSGVESRK-- 127 L+ + + + +R + + R D R++ +++ ++ + Sbjct: 2 LLRRFLGQCSRTN-SQETRDGYMRDLRHLTRWRDRHYPDLLIRELDPPMVQNWIDDLRGQ 60 Query: 128 -----HTPSSAIQFLTSMRVLFKW-----------AVRQEYVAINPCLSVERPKRKTEGI 171 P + + L+ + LF+W R + + + K +E Sbjct: 61 VDAGEIKPRTFNRRLSVVSALFRWASEPSRSGVTGIGRNPVPGKSHLVGGKEGKAMSEDD 120 Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 + + + ++ + G R S+ R ++ + G Sbjct: 121 LSKLLGVVASSRDRSARNNRDFVLIRGSYLLGARVSEVARLQWCDVEPLADGGQIHLLGK 180 Query: 232 I------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285 + L F + K + + + KAGV+ Sbjct: 181 GSKARTVRVSADTLQLFESLGRAGESDYLFPSSRTKSHLTRQAINYTMRKWGEKAGVDVH 240 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT + G L T G + D Y K Sbjct: 241 PHKLRHSHATHAIRRGTNVFCLQHTLGHSSTDTTSGYVK 279 >gi|222085948|ref|YP_002544480.1| tyrosine site-specific integrase/recombinase protein [Agrobacterium radiobacter K84] gi|221723396|gb|ACM26552.1| tyrosine site-specific integrase/recombinase protein [Agrobacterium radiobacter K84] Length = 431 Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 45/380 (11%), Positives = 96/380 (25%), Gaps = 62/380 (16%) Query: 21 IIYYFRKGHG------RRIRLPY--PHESTFIPAYM---SALTGSTPKREYINSPRKKPT 69 I +R G G +RI++ H A + +K Sbjct: 43 WIIEYRPGAGGRGVSKKRIKIGTLATHSPEAAREEASRTLARVTLGSDPAAARTDERKGQ 102 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESR-- 126 + + + + + ++ ++ I G + + + Sbjct: 103 VVAAVAETWLEEHVLIKRKPKTYNEYKLAVERYIKPVLGSLKFALVEPSDVLRMQAKIIR 162 Query: 127 ------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW------ 174 + A + L ++ ++ WA + V + + K I + Sbjct: 163 GKVNKANGGRTMANRALATLSAIYGWAQDLKIVPLGFNPVTSIERFKENQIERFLTSEEI 222 Query: 175 -------------------------TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209 K + G A L++G R S+ Sbjct: 223 GSLATALTEAETIGLPYEVDETKAKAKHANRVENRRTVYGEHAIAAIRLYLFTGCRRSEI 282 Query: 210 CRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL----LAMTPIGKETFFINNDKQKMN 265 R + + + T + + L K + Sbjct: 283 LRLTWSDVDLERGILFLPDSKTGKKPVILSPQAQAILTNLTRVGKYVIAGADAGTKDEAP 342 Query: 266 ATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +KA +AG++K H +R A+I A G + G K + + Y Sbjct: 343 RADIDRPWKAVTRRAGLHKLRLHDLRHTYASIGAGGGQGLPIIGKLLGHKNIATTQRYAH 402 Query: 325 GADRIRLGIKNSRRISSVVD 344 L +R++ + Sbjct: 403 ------LDTNPMKRVAGFIG 416 >gi|317120860|ref|YP_004100863.1| integrase family protein [Thermaerobacter marianensis DSM 12885] gi|315590840|gb|ADU50136.1| integrase family protein [Thermaerobacter marianensis DSM 12885] Length = 369 Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 49/357 (13%), Positives = 105/357 (29%), Gaps = 50/357 (14%) Query: 17 RHGKIIYYFRKGHGRR----IRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 + GK + R GR RL + R T+ Sbjct: 4 KRGKDYWEIRVDIGRDPKTGKRLWKYTSVRGTKRDAERVEQQLKARHMQGELTAVRMTVD 63 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS- 131 L+ E+ + + + +I G ++T I+ ++ + P Sbjct: 64 ELLDEWLAHVR-TNREGRTYDDYAYCTRRIRAAFGPMRVDRLTRAQIQRWLDELQQAPRD 122 Query: 132 ----------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + + ++ +AVR Y+ NP ++ P+R+ T+E ++Q Sbjct: 123 DGRPGNLSATTVQKHHRALHAALSYAVRMGYLGYNPADNLTLPRRQRSEPPMLTREQLEQ 182 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK------------- 228 + G++ + ++GLR + C + + + +I+ ++ Sbjct: 183 LLEA-ALGTRWYPLWYVAAHTGLRVGELCGLWWEDIDWSRPAIRVRRALKQDREGKRLIL 241 Query: 229 ----TGTIITVELPDGFMKLLAMT-------------PIGKETFFINNDKQKMNATQFSI 271 V L D ++L E F + + + Sbjct: 242 GDVKNHEARVVWLDDRTAEVLDRHRAEQQLEIARAQRWEHPEHVFTAPGGRFLRPDVPTQ 301 Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISAD-AGATAHELMATYGWKTVD-QAETYTKG 325 + A + G+ S H +R + G + + G + AE Y Sbjct: 302 VLRKHAKRLGLPPLSMHDLRHIHGSHLLQYHGWSITAVSERLGHYSPAFTAEVYAHV 358 >gi|297537324|ref|YP_003673093.1| integrase family protein [Methylotenera sp. 301] gi|297256671|gb|ADI28516.1| integrase family protein [Methylotenera sp. 301] Length = 333 Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 62/339 (18%), Positives = 111/339 (32%), Gaps = 26/339 (7%) Query: 2 TPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61 T +L LPP + +HG YYF + IRL + A + L G P Sbjct: 6 TNNLDLPPHMQ---IKHGA--YYFVGRDKKWIRLSE--DKALALAKWAELEGEIPFPPNE 58 Query: 62 NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121 P +L LI Y A ++ + + + + R + HI Sbjct: 59 EKPI--KGSLGELIMRYMIEIAPHK-AKSTYQGNKLEAENLKKVFSKVQARAVLPTHIAK 115 Query: 122 GVESRKHTPSS-AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 +++R T A + + + ++ + +R V NPC+ + E R D + Sbjct: 116 YLDTRGITSQVRANREIALLSHIYTYGMRWGVVNSNPCIG---VAKHKEKGRDRYIMDNE 172 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 + + + LR D ++ + + IK KTG E G Sbjct: 173 FEGVKNIASELIAIVMDMAYITALRKGDILSLKLEQVTDEGIWIKQNKTGAKQLYEWSIG 232 Query: 241 FMKLLAM-----TPIGKETFFINNDKQKMNATQFSIWFKA----KATKAGVNKSAHGVRK 291 ++ PI F + + + F + A + G + H +R Sbjct: 233 LHDVVDRAKALKRPIRGLYLFCTRQGKPYSDSGFKAMWNRVQVKWAEQGGSRFTFHDIRA 292 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 + T + + G + G + E Y K + R Sbjct: 293 KALTDAKNLGMD---AQSLAGHSSAAMTEHYIKQREFKR 328 >gi|255010477|ref|ZP_05282603.1| site-specific recombinase, phage integrase family protein [Bacteroides fragilis 3_1_12] Length = 537 Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 36/280 (12%), Positives = 81/280 (28%), Gaps = 25/280 (8%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK----HIRSGVES 125 K + EY + + S S +++ IT +I + Sbjct: 241 FKGFVMEYLDWLKQCKGYSPRTIESRYSQLKTMMQTLKVDSLEDITPSILDNYICKRHDE 300 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG------IRPWTKEDM 179 + +T +R FK+A + S++ P+ ++ + Sbjct: 301 DGCNRRTIAATVTILRGFFKYAEEKGLCNPGLVYSLKAPRVYAHENLPSFVPYNIVQQIL 360 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---- 235 Q K G + L GLRCS+ ++ + ++ ++ Sbjct: 361 QSKKDTAGIGVRDYAILLLLSVYGLRCSEVTNMKLKDIDWRNETLYLRRAKNCRPQVLPL 420 Query: 236 --ELPDGFMKLLAMTPIG-----KETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--- 285 + + ++ + ++++ + K + G+ Sbjct: 421 LPIVGNAIVRYIKEVRFNKSKKEYLFLCKRAPHEQLSTSTIYNLVKKELKDKGLELRHYG 480 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 H +R AT + G + E+ G +D Y K Sbjct: 481 PHSLRHTCATHLINTGHSLKEIADLLGHVGLDTTRIYAKV 520 >gi|221200783|ref|ZP_03573824.1| phage integrase [Burkholderia multivorans CGD2M] gi|221206979|ref|ZP_03579990.1| phage integrase [Burkholderia multivorans CGD2] gi|221173053|gb|EEE05489.1| phage integrase [Burkholderia multivorans CGD2] gi|221179355|gb|EEE11761.1| phage integrase [Burkholderia multivorans CGD2M] Length = 403 Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 50/354 (14%), Positives = 100/354 (28%), Gaps = 25/354 (7%) Query: 9 PFVTKERTRHGKI----IYYFRKGHGRRIRLPYPHESTFIPAY-----MSALTGSTPKRE 59 P + T G+ Y G R+ L E T A A Sbjct: 29 PGFLCKITPAGRRVFMLQYRTNAGQRRKPALGLFGELTVEQARAMAQDWLAEVRRGGDPG 88 Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKH 118 + +K T+ L ++ + +++ +++ ++ +I G ++ Sbjct: 89 GDRAEARKAPTIAELCKKFMEDYSRKRNKPSTQDGYQAVINRNVIPLLGRKKVHEVKRPD 148 Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT--- 175 I +E + P+ A + +R +F + Y P Sbjct: 149 IAGLMEKLSYKPTEANKTFGVLRKMFNLSEVWGYRPDGTNPCRHVPMYPPGKETRLIVDD 208 Query: 176 -----KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230 +++ ++ E L+ R S+ C+ + + + Sbjct: 209 ELVRVFRQLEKIEAEELENYVIPLSIRLQFEFAGRRSEICKLEWDWVDLEHRRVVWPDSK 268 Query: 231 TIITVELPDGFMKLL-----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 T + L + + + + Q + A V Sbjct: 269 TGGMSKPMSEEAYRLLSTAPRLEGCRYVLPKPKDPTKHLTYGQHYCGWCRVLKAADVPHV 328 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSR 337 HG+R SAT A++G M KTV Q Y D+ +R + Sbjct: 329 GTHGIRHRSATDIANSGVPIKVGMELTQHKTVAQFMHYVHTEDKPVRDAAELVA 382 >gi|254555199|ref|YP_003061616.1| prophage Lp3 protein 1, integrase [Lactobacillus plantarum JDM1] gi|254044126|gb|ACT60919.1| prophage Lp3 protein 1, integrase [Lactobacillus plantarum JDM1] Length = 384 Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 49/388 (12%), Positives = 114/388 (29%), Gaps = 62/388 (15%) Query: 11 VTKERTRHGKIIYYFRKG------HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64 + K + + G Y F+ G++ + A ++ ++ P Sbjct: 4 IKKYQDKDGNTRYQFQVYLGVDPQTGKKKSTRRRGFKSKSAARIALSRIEVELQQEPVLP 63 Query: 65 RKKPTTL----KWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHI 119 +Y + ++ F + I+ G+ R IT Sbjct: 64 VDNNILFVNVYHEWYDQYINTVR-----ESTWARTAGMFDNHILPLFGNKRLRTITVNQC 118 Query: 120 RSGVESRKHTPSSAI--QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 + V + ++ + +F++ ++ Y+ NP + P + Sbjct: 119 QRAVN-LWFKEVTYNYKRWYNYLVAVFEYGLKHGYITHNPARMITMPVKPDSWGDKPDNF 177 Query: 178 DMQQFKSFWSE------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 + + + ++ F L ++G+R + Q + +++ KT T Sbjct: 178 WDRDQLKTFFKCIDQQKETEKYCLFRVLAFAGVRRGECLALTWQDIDFVHKNLRVNKTLT 237 Query: 232 -----------------IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF----- 269 TV L + +++L + +++ + Q Sbjct: 238 QGKRGKQIIQAPKTKKGRRTVSLDNTTVEILQRWHKQQREYYLFLGFNTLQPDQLVFANT 297 Query: 270 ----------SIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVD 317 W K T + + HG R A+ AGAT E+ G + V Sbjct: 298 KNGFKSLNTPGKWLKRIITDYHLTPSITVHGFRHSHASALFAAGATIKEVQTRLGHEDVA 357 Query: 318 QA-ETYTKGADRIRLGIKNSRRISSVVD 344 YT + + ++++ + Sbjct: 358 TTLNVYTHVT--KGQNQQAANKLANYLG 383 >gi|225864449|ref|YP_002749827.1| DNA integration/recombination/invertion protein [Bacillus cereus 03BB102] gi|225788669|gb|ACO28886.1| site-specific recombinase, phage integrase family [Bacillus cereus 03BB102] Length = 292 Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 42/288 (14%), Positives = 93/288 (32%), Gaps = 37/288 (12%) Query: 90 NSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL---TSMRVLFK 145 ++ + + ++ + II G K+ HI+ ++ + L ++ Sbjct: 6 STFVGYRAFINQHIIPSIGMVALHKLNVMHIQKCYKTAIDRGIANNSVLLMHRILKSALN 65 Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205 AV+Q ++ NP E PK++ I+ WT+E++++F E S+ + + + +G+R Sbjct: 66 LAVKQNIISRNPADFAEIPKKERTSIQTWTEEEVKKFLLHSQE-SRYHIGYLLAITTGMR 124 Query: 206 CSDSCRAGVQHLQNNIFSIKTQK--------------TGTIITVELPDGFMKLLAMT--- 248 + Q + ++ + + T+ +P ++ L Sbjct: 125 MGEVLGLRWQDVDFEKHTVTINQTSGHDNKIKKTAKTNSSKRTIPVPKETIESLKKHKVL 184 Query: 249 -----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATI 296 + N + F F AGV H +R ATI Sbjct: 185 INQEKLRLGSAYQDFDLINCNEFGMIIKKANFRNNFIRAIHNAGVKEIKFHDLRHTHATI 244 Query: 297 SADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVV 343 G + G + Y+ + + + + Sbjct: 245 LLKQGVNPKIISERLGHTDISMTLSVYSHVLPN--MQEEAVKNFGKSI 290 >gi|115374267|ref|ZP_01461552.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1] gi|310818193|ref|YP_003950551.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1] gi|115368688|gb|EAU67638.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1] gi|309391265|gb|ADO68724.1| Phage integrase family protein [Stigmatella aurantiaca DW4/3-1] Length = 402 Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 51/385 (13%), Positives = 108/385 (28%), Gaps = 61/385 (15%) Query: 10 FVTKERTRHGKII--YY----FRKGHGR--RIRLPYP-HESTFIPAYMSALTGSTPKREY 60 + K +T+ GK+ ++ ++ +G+ R+R P + Y + + + Sbjct: 4 RLRKWKTKEGKVQEAWWVDVKYQHPNGKVERVRKASPINTRRGAEEYERQVRHALLTGTF 63 Query: 61 INSPRK-KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKH 118 + TL + + + +S ++ + ++ G+ I Sbjct: 64 GKENSAGRALTLGEFAPRFITDSENNN-KYSSVVTKQQILKDHVLPFFGEMALSAIGPAE 122 Query: 119 IRSGVESRKHTPSSA----------------------------IQFLTSMRVLFKWAVRQ 150 I + S+A LT + L A Q Sbjct: 123 IEDFKALMRKKKSAARARKEAPTRAAIRKRKDTEAKPLSLKSINNVLTVVSRLLAVAEEQ 182 Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210 + V+ K+ + + + + SE + R L +GLR + Sbjct: 183 RVI--PQAPRVKLFKKLPKPPFDFLSFEEVERLIAASE-PEWRALLLVALKTGLRQGELI 239 Query: 211 RAGVQHLQNNIFSIKTQKTGTI-----------ITVELPDGFMKLLAMTPIGKETFFINN 259 L + ++T TV+LP + L + + Sbjct: 240 GLQWADLDLQRGKLHVRRTIWRGVVGLPKGGRERTVDLPASAGEALKGHRHLRGPYVFCQ 299 Query: 260 DKQKM-NATQFSIWFKAKATKAGVNK-----SAHGVRKFSATISADAGATAHELMATYGW 313 K AGV++ H +R + A G + G Sbjct: 300 PDGKALTPGLLKHPLLRALRMAGVSREQGGIGWHDLRHTYGSHLAMRGVPLKAIQELMGH 359 Query: 314 KTVDQAETYTKGADRIRL-GIKNSR 337 T++ E Y + +R ++ Sbjct: 360 VTIEMTERYAHLSPEVRASAVQQLD 384 >gi|330504266|ref|YP_004381135.1| integron integrase [Pseudomonas mendocina NK-01] gi|328918552|gb|AEB59383.1| integron integrase [Pseudomonas mendocina NK-01] Length = 321 Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 35/311 (11%), Positives = 83/311 (26%), Gaps = 54/311 (17%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKHT 129 L+ + R+ + ++ + + + + IR ++ I + + R + Sbjct: 8 LLDQLRQQIRVRNYSIRTEAVYAEWAKRYIRFHHYRHPAEMGAAEIEAFLTHLAVKRDVS 67 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 S+ Q L ++ L+K ++ + + + ++P T+ ++ Sbjct: 68 ASTQNQALAALLFLYKEVLKLDLPWLQGVVRAKKP---KHLPVVLTRIEVDALLGQLQGD 124 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249 S + L + R ++ K LP ++ L Sbjct: 125 SWIVANLLYGAGLRLLEALRLRVKDVDFTRREIIVRDGKGQKDRVTMLPMRVVEPLRQHL 184 Query: 250 IGKETFF---------------------------------------------INNDKQKM 264 + + Sbjct: 185 NKVRHVHQGDLADGFGEANLPFALARKYPNAAKEWGWQFVFPSVNRSQDPRGHGIYRHHL 244 Query: 265 NATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 + + A +AG+ + + H +R AT +AG + G V Y Sbjct: 245 HEKTIQRAVREAAQRAGLIKHATPHSLRHSFATHLLEAGQDIRTVQELLGHSDVKTTMIY 304 Query: 323 TKGADRIRLGI 333 T +R L + Sbjct: 305 THVLNRGGLAV 315 >gi|323441307|gb|EGA98973.1| integrase [Staphylococcus aureus O46] Length = 354 Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 45/352 (12%), Positives = 102/352 (28%), Gaps = 30/352 (8%) Query: 18 HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77 GK Y F R + + + + A A T+ ++ Sbjct: 8 KGKWYYDFGHEGKRYKKKGFTTKREAVQAESIARNKVMK-----GFKINDKTSFIAYYND 62 Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSG-----DFDYRKITTKHIRSGVESRK--HTP 130 + K G + + +F++ +Q + + T R ++ H+ Sbjct: 63 WIKVNKEGVITDKAYATFKNAINQFKTFLEVENISNLVLSDLNTTFYRKFIKWYGSNHST 122 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSV----ERPKRKTEGIRPWTKEDMQQFKSFW 186 + + ++ A+++ + +P V P ++ E K+ + + Sbjct: 123 ETVRKIHNCLKQPIDDAIQEGLIHKDPTYKVVVKGTIPAQREEEKFMSIKDFINLKEYVS 182 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------ITVELPD 239 + Q L L+ +G R + R L +I T T I Sbjct: 183 NTPIQSYLFIYILIITGGRFGEVQRLCTSDLDYKNCTIHLPGTKTETSDRTVDIPQNDMK 242 Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISA 298 LA PI T N + + + + + + H +R + Sbjct: 243 ILKNTLAEMPISLTTQLFNTGTSLITHNAVTKVMQRYCLEKRIGKYTLHSIRHTHCSYLL 302 Query: 299 DAGATAHELMATYGWKTVDQAE-TYTKGAD-----RIRLGIKNSRRISSVVD 344 G + + + G K++ Y+ D + ++ ++ Sbjct: 303 HNGVSIYYISKRLGHKSIKTTMDVYSHLLDEIEQKEKEKALDALENMTGTLN 354 >gi|295399108|ref|ZP_06809090.1| integrase family protein [Geobacillus thermoglucosidasius C56-YS93] gi|294978574|gb|EFG54170.1| integrase family protein [Geobacillus thermoglucosidasius C56-YS93] Length = 324 Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 41/294 (13%), Positives = 85/294 (28%), Gaps = 44/294 (14%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESR 126 L + + ++ +L+ + S+E I G + + T HIR + Sbjct: 6 LDFYLQDFLLYCQSKNLSPKTLSSYEQSLKLFIAYLKNEHGIEEVDAVRTGHIRQYIAYL 65 Query: 127 KHTPS----------------------------SAIQFLTSMRVLFKWAVRQEYVAINPC 158 + + ++ +++V F W + + NP Sbjct: 66 QERGKYTVVNREASRLINRPENRRDYNKKISNVTINNYIRNIKVFFNWLHEEGEIHKNPV 125 Query: 159 LSVERPKRKTEGIRPWTKEDMQ----QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214 +++ K + + ++E+ QF G + ++ L +G+R + V Sbjct: 126 DKIKQIKTERKQKAGISQEEFNLLLSQFDYTTFHGYRNKVITMLLQDTGMRIGECLALTV 185 Query: 215 QHLQNNIFSI--KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT----- 267 + I K K V + L K+ + Sbjct: 186 DDIDFKHRMILVKKTKGRKERYVYFSQVMARELKHYIRFKDRYTDTELLFPTTRNTPLTV 245 Query: 268 -QFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320 F K + G++ H +R A G + L G +V E Sbjct: 246 HSFEKQLKQAGERIGLSIHPHQIRNNFARQYLLNGGDLYTLSRILGHSSVKVTE 299 >gi|154505934|ref|ZP_02042672.1| hypothetical protein RUMGNA_03476 [Ruminococcus gnavus ATCC 29149] gi|153793952|gb|EDN76372.1| hypothetical protein RUMGNA_03476 [Ruminococcus gnavus ATCC 29149] Length = 376 Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 46/348 (13%), Positives = 107/348 (30%), Gaps = 41/348 (11%) Query: 19 GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78 G F G+R + + + + +T E+ + + + Sbjct: 20 GLYSARFVDRFGKRKHKRF----KKLQECRAWIADATYVDEHSDISMPSDMLVNQWFDYW 75 Query: 79 RKSAHWGSLAVNSRISF-ESYFDQIIRKSGDFDYRKITT---KHIRSGVESRKHTPSSAI 134 + N+ ++ E Y I G+ + + I + +++ S+ Sbjct: 76 IGIKK-KIVRSNTVRNYTERYIKNIKPVIGEMPLSDVKPLHCQKIFYDMADQEYRTSTIY 134 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLS-VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193 Q ++ +F++A E + NPC V+ K + D+Q+ ++EG Sbjct: 135 QARIALYNMFEYAKENEVLCSNPCKKSVKSDMGKPSEKKVALTRDIQKTFLQYAEGQSYE 194 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG------------- 240 + F+L +GLR + + + +I+ +++ Sbjct: 195 NQYRFILQTGLRTGELVGLKWKDVDLKSKTIQIRRSMEYRYSAKKWRIGEPKSKSGYRTI 254 Query: 241 ----------------FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284 ++ ++ +E F+ + + + KA + + Sbjct: 255 PLTEEAVAILKKQKEKNKRISEISTEWEEFVFLCRKGTPVKNSTYDTALFKICDKAKIPR 314 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330 S H +R AT +AG L G + Y + + Sbjct: 315 FSMHILRHTFATRCIEAGMKPKTLQMLLGHSNIGITMNLYVHTTEEEK 362 >gi|300115010|ref|YP_003761585.1| integrase family protein [Nitrosococcus watsonii C-113] gi|299540947|gb|ADJ29264.1| integrase family protein [Nitrosococcus watsonii C-113] Length = 310 Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 40/292 (13%), Positives = 90/292 (30%), Gaps = 37/292 (12%) Query: 77 EYRKSAHW-GSLAVNSRISFESYF----DQIIRKSGDFDYRKI--TTKHIRSGVESRKHT 129 ++ H+ + + ++ S + D+ T + + + R Sbjct: 14 DFLAHLHYAKGYSQGTCYAYNSDLGIWGRWLAEAGNDWRQATHVDTEQFVAWQMRERGTK 73 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT-------------- 175 + + + +KWA++ V +P ++PKR Sbjct: 74 AHIVARRSSCLGSFYKWAMKNALVESDPIYLADKPKRPYRIPVWLEKEEQLAFQEAVQRT 133 Query: 176 -----KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----- 225 + + + F +L SGLR S++ V+ ++ K Sbjct: 134 EDLPENIFGHTRAHIKTVRRRYDVLFGLILNSGLRISEALAVKVRDVRVVNGIAKSVRII 193 Query: 226 ---TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 ++ + L +G F ++ + + + +AG+ Sbjct: 194 GKGNRERLVPLPEAFGQVLGAWLQDRAVGDFVFAKAPGEKPLGPHAVRAYLRRLIERAGI 253 Query: 283 NK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 +K + H +R AT +AGA ++ A G + + YT R+ Sbjct: 254 DKPVTPHKLRHTYATRLLEAGAELVDIQALLGHVDLSTTQIYTH-VSEERMA 304 >gi|189405329|ref|ZP_02814784.2| integrase for prophage CP-933T [Escherichia coli O157:H7 str. EC869] gi|261258240|ref|ZP_05950773.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str. FRIK966] gi|189370712|gb|EDU89128.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str. EC869] Length = 333 Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 45/329 (13%), Positives = 92/329 (27%), Gaps = 32/329 (9%) Query: 14 ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + GK + Y G+RIR + +S + + S + L Sbjct: 4 RKIPSGKWLCECYPYGASGKRIRKQFATKSEALSYERRLMNSRVGDEFQDGSGSR----L 59 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----- 126 LI+ + + +L+ + + I + GD + + E R Sbjct: 60 SELIARWFEMYG-KTLSSG--AERKVKLEAICSRLGDPFASQFDKNMFATYRERRLSGEW 116 Query: 127 ------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 K + ++ + + + +F R + L+ R R+ E + D Sbjct: 117 NPKGKKKLSEATVNREQSYLHAVFAELKRLGEWSGENPLTGIRKFREEEKELAFLYVDEI 176 Query: 181 QFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237 + + S+ + + L +G R S++ + + K TV + Sbjct: 177 ERLLIACDESRNKDLGVVVRIGLATGARWSEAEGLKQSQVLPGRITFVKTKGKKNRTVPI 236 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATIS 297 +L + F K + + H +R A+ Sbjct: 237 SPQLQAMLPKKRGALFSPC---------YEAFDAAIKRAKIELPDGQLTHVLRHTFASHF 287 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGA 326 G L G + Y A Sbjct: 288 MMRGGNILVLQKILGHSDIKMTMRYAHFA 316 >gi|300773739|ref|ZP_07083608.1| tyrosine recombinase XerC [Sphingobacterium spiritivorum ATCC 33861] gi|300759910|gb|EFK56737.1| tyrosine recombinase XerC [Sphingobacterium spiritivorum ATCC 33861] Length = 293 Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 36/280 (12%), Positives = 84/280 (30%), Gaps = 25/280 (8%) Query: 76 SEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHTPSS 132 + + + ++ ++ D + + IR + Sbjct: 4 QRFLNFLRFEKRYSNHTIEAYTHELTIFFTFLQDQGIPEEEADHRVIRFYLSHLMEEGRQ 63 Query: 133 A---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--- 186 A + ++++R +K+ R+ NP ++ K + K+ M Sbjct: 64 ATSVNRSISALRTYYKFLQRESLTDQNPLTLIKALKTPKKLPSVMEKDKMVGLLDQMEGA 123 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFM 242 + L E L +G+R ++ + + + +I K V + + Sbjct: 124 VDSFTDERDYLVLELLFGTGIRLTELLQIKITDIDFYNKNILILGKRNKERLVPVNHTLL 183 Query: 243 KLLAMTPIGKETFFINNDK---------QKMNATQFSIWFKAKATKA--GVNKSAHGVRK 291 + L + + I+N ++ + KS H +R Sbjct: 184 EKLKIYIQQLDNQKIDNKTAFLIVTKEGKQAYPKMIYRIVHRYLSLISTQRKKSPHVLRH 243 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330 AT D GA + + G + + YT +R++ Sbjct: 244 TFATALLDNGADLNAIKELLGHAGLAATQVYTHNSVERLK 283 >gi|310813968|gb|ADP30794.1| IntI1 [Providencia rettgeri] Length = 313 Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 35/300 (11%), Positives = 85/300 (28%), Gaps = 52/300 (17%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132 ++ + R+ + ++ + ++ ++ IR G + + + + + + S Sbjct: 16 VLDQLRERIRYLHYSLRTEQAYVNWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 ++ L + + + + RP+ T +++ + + Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230 RL + L +G+R S+ + V+ L + +I ++ Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193 Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265 + + A + + M Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253 Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 F FK +AG+ K + H +R AT +G + G V YT Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313 >gi|284038161|ref|YP_003388091.1| integrase family protein [Spirosoma linguale DSM 74] gi|283817454|gb|ADB39292.1| integrase family protein [Spirosoma linguale DSM 74] Length = 372 Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 52/366 (14%), Positives = 100/366 (27%), Gaps = 39/366 (10%) Query: 10 FVTKERTRHGKIIYYFRK----------GHGRRIRLP-----YPHESTFIP--AYMSALT 52 + K+ +G+ Y RR L P A AL Sbjct: 5 HLRKKSISNGRTSLYLDYYPAIPHPDTGKDTRREFLGLYLFNRPKTPADKEQNAETLALA 64 Query: 53 GSTPKREYINSPRKK-----PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107 + + I+ +L Y + N + +ES + +G Sbjct: 65 ENLRAKRQIDVQNGAYGFLSKKSLNTCFVAYCEQLAALKTGSN-KDGWESALHYLRDFTG 123 Query: 108 D-FDYRKITTKHIRSGVESRKHT-------PSSAIQFLTSM---RVLFKWAVRQEYVAIN 156 +T K R P + ++ + K A + ++ Sbjct: 124 GQLKLSNLTPKKCRDFRAYMMDAKSQRNEEPLAVNSTVSYFNKFKAALKQAYIDGLINVD 183 Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ-PRLAFEFLLYSGLRCSDSCRAGVQ 215 +E K + T ++Q + A F +GLR SD + Sbjct: 184 LNAKIESIKPEETRREYLTLAELQTLVQTDLPALPILKQAALFSALTGLRYSDIEALTWE 243 Query: 216 HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI-WFK 274 ++++ S T + + LA+ +G + + K Sbjct: 244 QIRHDASSGYFIHFTQQKTRGVEVLPISELAVALLGTRLGDSQPVLPGLIYSAHWNKILK 303 Query: 275 AKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRL 331 AG+ + H R AT+ G + + G + + + Y K D+ R Sbjct: 304 QWVKDAGITKPITFHSFRHTYATLQLSLGTDIYTVSKMLGHRELKTTQIYAKIVDQSKRD 363 Query: 332 GIKNSR 337 + Sbjct: 364 AADKIK 369 >gi|218695473|ref|YP_002403140.1| Integrase [Escherichia coli 55989] gi|218352205|emb|CAU97951.1| Integrase [Escherichia coli 55989] Length = 333 Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 45/329 (13%), Positives = 92/329 (27%), Gaps = 32/329 (9%) Query: 14 ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + GK + Y G+RIR + +S + + S + L Sbjct: 4 RKITSGKWLCECYPYGASGKRIRKQFATKSEALSYERRIMNSRVGDEFQDGSGPR----L 59 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----- 126 LI+ + + +L+ + + I + GD + + E R Sbjct: 60 SELIARWFEMYG-KTLSSG--AERKVKLEAICSRLGDPFASQFDKNMFATYRERRLSGEW 116 Query: 127 ------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 K + ++ + + + +F R + L+ R R+ E + D Sbjct: 117 NPKGKKKLSEATVNREQSYLHAVFAELKRLGEWSGENPLTGIRKFREEEKELAFLYVDEI 176 Query: 181 QFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237 + + S+ + + L +G R S++ + + K TV + Sbjct: 177 ERLLIACDESRNKDLGVVVRIGLATGARWSEAEGLKQSQVLPGRITFVKTKGKKNRTVPI 236 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATIS 297 +L + F K + + H +R A+ Sbjct: 237 SPQLQAILPKKRGALFSPC---------YEAFDAAIKRAKIELPDGQLTHVLRHTFASHF 287 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGA 326 G L G + Y A Sbjct: 288 MMRGGNILVLQKILGHSDIKMTMRYAHFA 316 >gi|298375507|ref|ZP_06985464.1| integrase [Bacteroides sp. 3_1_19] gi|298268007|gb|EFI09663.1| integrase [Bacteroides sp. 3_1_19] Length = 330 Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 32/264 (12%), Positives = 81/264 (30%), Gaps = 14/264 (5%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESRK 127 + L++ + + + + + + ++++ ITT IR E + Sbjct: 53 EHLLNSFISAKKIEGCSEKTLTYYRNTIERLLVTL-SLAICHITTTDIRTYLSDYQEEHQ 111 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + + F W ++Y+A +P + + K + + E ++Q Sbjct: 112 SSKVTIDNMRRIFSSFFAWLEDEDYIAKSPVRRIHKVKTDSLVKEVLSDEQLEQ-LRDSC 170 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLA 246 + +FL +G+R + + + + + V L Sbjct: 171 TTKRDLAIIDFLSSTGIRVGELVKLSREDIDFHERQCVVFGKGNKERVVYFNARTKLHLQ 230 Query: 247 MTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299 + N+ ++ + + + + K H R+ AT++ D Sbjct: 231 QYLNERTDSNPALFVSLNSPHSRLTISGVEVRIRKMGQALSMPKVHPHKFRRTLATMAID 290 Query: 300 AGATAHELMATYGWKTVDQAETYT 323 G ++ G +D Y Sbjct: 291 KGMPIEQVQRLLGHVRIDTTLHYA 314 >gi|149022033|ref|ZP_01835995.1| prophage LambdaSa1, site-specific recombinase, phage integrase family protein [Streptococcus pneumoniae SP23-BS72] gi|147929877|gb|EDK80866.1| prophage LambdaSa1, site-specific recombinase, phage integrase family protein [Streptococcus pneumoniae SP23-BS72] Length = 375 Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 43/373 (11%), Positives = 117/373 (31%), Gaps = 52/373 (13%) Query: 18 HGKIIYYFRKGH---GRRIRLPYPHESTFIPAY-MSALTGSTPKREYINSPRKKPTTLKW 73 +GK Y+ R + ++ E A +A+ + +++ + + T + Sbjct: 8 NGKFKYFERYKDPYTEKLKKVSVTMEKKTPQARNQAAILLQEKINKKLSTKQVESITFEE 67 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESRKHTPS- 131 + + + KS ++ +++ + +S ++ D + + ++ +E + Sbjct: 68 IYNLFYKSW-AQTVKESTKHNCKSVDKKMKEVIPSDTILANLDRRFLQEAIEKIIESNGY 126 Query: 132 -SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ--QFKSFWSE 188 +A + +R +F +AV+ Y+ N P++ K + + Sbjct: 127 ITAKKVRHRLRGIFNYAVQYSYIENNEVDYTTIPQKPKTLEELEKKRNNFLTMQEIKALV 186 Query: 189 GSQPRLAFEFLL--------YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------- 232 R + +G+R + ++++ I+ Sbjct: 187 DVLNRREYHQKYADMVLVLTLTGMRYGELTALQLKNIDFENNKIEITGNFDSVNKIKTLP 246 Query: 233 ------ITVELPDGFMKLLAMTPIG-----------KETFFINNDKQKMNATQFSIWFKA 275 T+++ + ++ + + F Q F K Sbjct: 247 KTTNSIRTIKVSESVIEAIQRQIVRLSERFQPLSSDDYIFCFEKWNQPTTIACFIQILKK 306 Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLG 332 +A + K S+H R + A++G +M G E Y+ + Sbjct: 307 YGKQAKIEKNLSSHIFRHSHISFLAESGLPIKSIMDRVGHSNAKMTLEIYSHTTE----- 361 Query: 333 IKNSRRISSVVDS 345 ++ + +D+ Sbjct: 362 -DMEDKLVNKLDT 373 >gi|330963555|gb|EGH63815.1| integrase family protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 325 Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 48/314 (15%), Positives = 103/314 (32%), Gaps = 15/314 (4%) Query: 18 HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77 +G RK + + S + G ++ ++++ + TTLK Sbjct: 9 NGTWRTKIRKKGYPSLS-ASFDTKAEAQRWASEIEGDMSRKRFVDTREAESTTLKQAQDR 67 Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAI 134 Y + + K G +I + + ++R + ++ Sbjct: 68 YEREVSAQKKGARQEKT--RIKTWAESKYGTKSMAEIRSSDLAEYRDARLAEGMSTNTVR 125 Query: 135 QFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-EGSQ 191 L + L+ A++ + NP + PK E R T +++ S ++ Sbjct: 126 LSLALISHLYTVAIKDWGIEGLSNPVAKLRMPKGSRERDRRPTAKELAAVLKAASAIHAE 185 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251 + E + + +R + +H++ ++ K G+ V L LL P Sbjct: 186 MPVIIELAIETAMRRGELMTLRREHIRGKHVLLEDTKNGSRRLVPLSIRARALLDSLPAR 245 Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMAT 310 + + + S +F A V + H +R + + G + E + Sbjct: 246 IDGAVFSL-----SPHSVSQYFLKSCRAAKVTDLHFHDLRHEGTSRLFEKGFSIMEAASI 300 Query: 311 YGWKTVDQAETYTK 324 G KT+ + YT Sbjct: 301 TGHKTMSMLKRYTH 314 >gi|91781187|ref|YP_556394.1| putative phage integrase [Burkholderia xenovorans LB400] gi|121582724|ref|YP_973166.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2] gi|91693847|gb|ABE37044.1| putative phage integrase [Burkholderia xenovorans LB400] gi|120595986|gb|ABM39424.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2] Length = 400 Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 57/356 (16%), Positives = 97/356 (27%), Gaps = 25/356 (7%) Query: 7 LPPFVTKERTRHGKI----IYYFRKGHGRRIRLPYPHESTFIPAY-----MSALTGSTPK 57 L P + T G+ Y G R+ + E T A A Sbjct: 27 LVPGFMCKVTPAGRKVFMLQYRTNAGERRKPAIGLYGELTVEQARSLAQTWLAEVRRGGD 86 Query: 58 REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITT 116 + +K T+K L + +++ ++ D+ II G + + Sbjct: 87 PGGDKAEARKAPTVKELCGRFMSDYSKVRNKPSTQKGYQGNIDRNIIPILGRMKVQDVKR 146 Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + + ++ + TP A L MR +F A P+ Sbjct: 147 PDVATMMKKLESTPMEANHTLAVMRKMFNMAEIWGLRTDGTNPCRHIPQYPQGKTTRLIT 206 Query: 177 EDMQQFKSFW--------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228 ++ SE LA R S+ + + Sbjct: 207 DEEMGKLFRHLDKVEAESSEPPIVTLAIRLQFEFAARRSEILLLEWTWVDLENRRVAWPD 266 Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFI-----NNDKQKMNATQFSIWFKAKATKAGV- 282 + T + L T E + + M + + AGV Sbjct: 267 SKTGGMSKPMSEEAHRLLSTVPRHEGSLYVLPSLRDPLKHMTNGEHYNGWSRILKAAGVQ 326 Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSR 337 + HG+R SAT A++G M KTV Y D +R + Sbjct: 327 HVGTHGIRHRSATDIANSGIPVKVGMVLTAHKTVAMFMRYIHTEDAPVRQAAELVA 382 >gi|253990782|ref|YP_003042138.1| site-specific tyrosine recombinase XerC [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253990786|ref|YP_003042142.1| site-specific tyrosine recombinase XerC [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211639116|emb|CAR67728.1| Similar to integrase/recombinase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211639122|emb|CAR67734.1| Phage integrase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782232|emb|CAQ85396.1| similar to phage integrase/recombinase [Photorhabdus asymbiotica] gi|253782236|emb|CAQ85400.1| similar to phage integrase/recombinase [Photorhabdus asymbiotica] Length = 376 Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 52/306 (16%), Positives = 95/306 (31%), Gaps = 36/306 (11%) Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRI-----SFESYFDQIIRKSGDFDYRKITTKH 118 P P +L L+ + + + + ++ + G + IT Sbjct: 24 PAHDPKSLYALLLRFVVWRQERNWSETTLKVQTHHTYRFIL--WATERGLYYAADITRPI 81 Query: 119 IRSGVESRKH---------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169 + + + L ++V FKW +Q + NP +E P+ + Sbjct: 82 LERYQRYLYQYRKTNGEPLSTRTQRTQLEPLKVWFKWLTKQNLILANPAADLELPRLEKH 141 Query: 170 GIRPW-----TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIF 222 R T++ + Q +G + R E L +G+R + R V + Sbjct: 142 LPRYILTIDETEQILAQPDLTTLQGVRDRALMELLWSTGMRRGELTRLDVYSVDGSRKTV 201 Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM-----------NATQFSI 271 +I+ K + L + + L I N K A S Sbjct: 202 TIRQGKGNKDRVLPLGERALSWLQRYQQQVRPQLIVNPDVKALFVAMDGLDGLQANGISN 261 Query: 272 WFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 A G+ K H R AT + GA + A G +V+ + YT+ + R Sbjct: 262 LVTAYINAVGIEKKGACHLFRHAMATQMLENGADLRWIQAMLGHASVESTQVYTQVSIRA 321 Query: 330 RLGIKN 335 + Sbjct: 322 LQAVHA 327 >gi|191637856|ref|YP_001987022.1| Integrase [Lactobacillus casei BL23] gi|18148988|dbj|BAB83530.1| integrase [Bacteriophage PL-2] gi|190712158|emb|CAQ66164.1| Integrase [Lactobacillus casei BL23] gi|327381925|gb|AEA53401.1| Type I restriction modification DNA specificity domain protein [Lactobacillus casei LC2W] gi|327385085|gb|AEA56559.1| Type I restriction modification DNA specificity domain protein [Lactobacillus casei BD-II] Length = 383 Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 34/366 (9%), Positives = 89/366 (24%), Gaps = 52/366 (14%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 +T +G + FR G+ ++S F + + + + E + T Sbjct: 6 KTANGS--WAFRASTGKDDIRRQVYKSGFKTRREATIAAAKIEEELDSGKIVSDPTFADY 63 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS--- 131 ++ ++ G + + + I D I ++ ++ P Sbjct: 64 FDKWIEAYKIGRHSEVTDEWYTIVAGYIREYFKDTKLSVIDRTAYQAFLDWLGTNPRKRS 123 Query: 132 -------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + + + +R + K A+ + + + + Sbjct: 124 EQPLSRSTVSRVNSYVRAVLKDAIEDGLTKHDFTRRAIISGKPAKDPSAKFLSVEEFKHV 183 Query: 185 FWSEGSQPRLAFEFLL------YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 L+ Y+G R ++ + +I ++ + Sbjct: 184 IEIADRHADLSHLSNYVVLIMAYTGARFEEAIGISWDRVNFKEQTITIDRSWQYKKRKQH 243 Query: 239 -------------------------------DGFMKLLAMTPIGKETFFINNDKQKMNAT 267 L N+ + + Sbjct: 244 DNFGGLKNAQSLRTVPIPSQLVLILKRLRKEQQENALKDGYRDSDNLVCRNDWHRVVTNE 303 Query: 268 QFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTK 324 + K A ++HG+R ++ AG + G ++ Y Sbjct: 304 TVNNTVKRLCGYAKTKNVITSHGLRHSHGSMLLFAGVDIMAISRRLGHASIQITMRVYLH 363 Query: 325 GADRIR 330 D ++ Sbjct: 364 EVDEMK 369 >gi|329768026|ref|ZP_08259537.1| hypothetical protein HMPREF0428_01234 [Gemella haemolysans M341] gi|328838511|gb|EGF88119.1| hypothetical protein HMPREF0428_01234 [Gemella haemolysans M341] Length = 367 Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 47/355 (13%), Positives = 106/355 (29%), Gaps = 39/355 (10%) Query: 11 VTKERTRHGKIIYY----------FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60 + + YY G +RI Y + Sbjct: 2 IKEYINSKDNKKYYEVKNEYLGKNVYTGKEKRISKKGFRTKREAQNY--IVKAKNEFLNG 59 Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHI 119 N R + T + + + + +S + ++ +I+ + I + Sbjct: 60 SNFLRSENITFGDVYKLWEEQHK-TQVKESSYHTIKTILDKRILPVFKELKIINIKLPYC 118 Query: 120 RSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 ++ + + + ++ + +AV+ E + N + PK+ E + + + Sbjct: 119 QNFINEVSKTYKKGYVTLIKGTIVQILDYAVKMEIIPTNYMKLTKVPKKIEEKKKNYYTK 178 Query: 178 D---MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--- 231 + S+ +AF L ++G+R + + + ++ K Sbjct: 179 KELLQFLKIVKENYSSETYVAFRILAFTGIRLGELRALTWKDINFKKKTLTISKNMMNIG 238 Query: 232 -------------IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF--SIWFKAK 276 + L D +K L INN N+ + + + Sbjct: 239 SKSKISTTKTKSSERIIFLDDETIKELKSYRELDNFISINNGIFIKNSRHYFNGMLLRIY 298 Query: 277 ATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRI 329 + + + HG R AT+ ++ +A E+ G K + TYT D Sbjct: 299 RDFPKLKQITPHGFRHTHATLLFESDLSAKEIQNRLGHKDITTTLNTYTHITDEK 353 >gi|310829015|ref|YP_003961372.1| integrase family protein [Eubacterium limosum KIST612] gi|308740749|gb|ADO38409.1| integrase family protein [Eubacterium limosum KIST612] Length = 408 Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 48/377 (12%), Positives = 111/377 (29%), Gaps = 58/377 (15%) Query: 9 PFVTKERTRHGK-IIYYFRKGHGRRIRLPYPHES-TFIPAYMSALTGSTPKRE------- 59 ++ + +GK + + + I L K + Sbjct: 19 RYIIRYENVYGKAVYHSVYAKTYKEIILKLEEAENKVFEEVQLQRLLREEKEKSNQRGII 78 Query: 60 --------YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFD 110 N K T L + ++ +S ++ +S + + ++ + G + Sbjct: 79 ENVLNLQFDENQKDKAKTLLAEWLRKWLESYKKYTIKQSSYTRYSNVVNRHLVPRLGHCE 138 Query: 111 YRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 + I+ + E K S+ + + K A ++ + NPC + PKR Sbjct: 139 LENLKPDAIQDYIKATLEENKIAVSTVRGHIVILSAALKQAQKEGLIHKNPCDDIILPKR 198 Query: 167 KTEGIRPWTKEDMQQFKS--FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 + ++ Q+ ++ S + A F L +G+R + + + + I Sbjct: 199 PIKKPVFLDVKEAQKLETVLKNSRDHKKSTAVLFALKTGIRLGELAALRWKDVDFDEQVI 258 Query: 225 KTQKTGTI------------------------ITVELPDGFMKLLAMTPIGKETFFINND 260 + + + T+ + +LL + ++ Sbjct: 259 QIRDSVQRVKNSEKSGMKTKMVFEGTKSYSSNRTIPMNPEIHELLYQYYETMKHRENFSE 318 Query: 261 KQKMN--------ATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATY 311 + ++F+ KAG+ + + H +R AT +A L Sbjct: 319 TFVFTNRKNSFIDPRVYQLYFRRILKKAGIRHVNFHALRHTFATHAASKNMQISVLSRIL 378 Query: 312 GWKTVD-QAETYTKGAD 327 G V + Y Sbjct: 379 GHSNVGLTLQLYVHVLS 395 >gi|149911917|ref|ZP_01900516.1| Hypothetical bacteriophage integrase [Moritella sp. PE36] gi|149805010|gb|EDM65038.1| Hypothetical bacteriophage integrase [Moritella sp. PE36] Length = 322 Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 43/302 (14%), Positives = 89/302 (29%), Gaps = 17/302 (5%) Query: 28 GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87 +G+R R Y L + ++ ++ P K L+ LI + Sbjct: 19 RNGKRHR-KKFKTKGEAQQYERWLLSTQNQKGWVEKPADKRP-LRDLIDLWYHYHGQQLK 76 Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKITTK---HIRSGVESRKHTPSSAIQFLTSMRVLF 144 + I + G ++T + R+ ++ + ++ + + +F Sbjct: 77 RP---EKELKHLLSIDKDLGYPRADQVTKQRFMQFRADKMAKGNKATTINRSQVRLSGVF 133 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204 + L + + + G + +A L +G Sbjct: 134 TVLIDAGEYHNEHPLKGISKLKLRASEMGFLNKKEITQLLSNLSGDELHVAKLC-LSTGA 192 Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264 R S++ + + + K G TV + FM + G+ Sbjct: 193 RWSEAAELRGNDIIHGRVTFNDTKNGKNRTVPITPEFMNEIHNGKTGRLFNS-------- 244 Query: 265 NATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + +F KA+ ++ H +R A+ G L G T+ Q TY Sbjct: 245 SYMEFYDVLKAQGFDLPKGQATHVLRHTFASHFMMNGGNILTLQKILGHSTIMQTMTYAH 304 Query: 325 GA 326 A Sbjct: 305 LA 306 >gi|307271277|ref|ZP_07552556.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0855] gi|306512026|gb|EFM81017.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0855] Length = 376 Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 50/355 (14%), Positives = 113/355 (31%), Gaps = 41/355 (11%) Query: 14 ERTRHG-KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 ++ + G + ++ GR ST A ++A + + + Sbjct: 5 KKLKSGWQFRVSYKDKDGRYKTKSVNGFSTKKEAQLAASEIEARYSKGYSLKEGEKL-FH 63 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132 + + G L+ ++ D + D +++T + + + T ++ Sbjct: 64 EYFRNWFEVYRKGKLSQDNDGDIRRAVDFSEKYFPDTKLKELTRQEYQKALNDYGETHAT 123 Query: 133 A--IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-- 188 A + T MR K A+ + + +P V+ +K + Q+ E Sbjct: 124 ASVKKHHTYMRAALKDALEEGIIHRDPTYRVQAIGKKNPKHEELKYLNYQESIHLVHEIL 183 Query: 189 -----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG------------- 230 R F + +G R S+ + ++K KT Sbjct: 184 EGIKPTYTSRFIILFGIATGCRFSEIIGMTWDCIDFKNKTVKVNKTWDYKYTNTFSNTKN 243 Query: 231 --TIITVELPDGFMKLLAMTPIGKETFFI-------------NNDKQKMNATQFSIWFKA 275 + + + D + LL + ++ +++ N++ + ++ T + + Sbjct: 244 YQSKRIITIDDDTLDLLKKLQLHQKEYYLKSGLRNENNLVFLNDNMELVSNTAVNKVLRK 303 Query: 276 KATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADR 328 K G + HG+R A+I G + G K + +TY D Sbjct: 304 FCRKIGTKELTCHGLRHTHASIMLYKGINIKYVSRRLGHKDIVTTLQTYQHILDE 358 >gi|239995901|ref|ZP_04716425.1| phage integrase [Alteromonas macleodii ATCC 27126] Length = 395 Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 36/346 (10%), Positives = 100/346 (28%), Gaps = 35/346 (10%) Query: 10 FVTKERTRHGKIIYYFR-KGHGR--RIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 ++ G +Y+R K +G+ + ++ + A + A + + + + Sbjct: 32 YLKFVVRPSGSKSFYYRAKKNGKDLKRKIGDASTMSLATARLIADSQHSGFKNESQNGVS 91 Query: 67 KPTTLKWL-----ISEYRKSAHWGSLAVNSRISFESYFD-----QIIRKSGDFDYRKITT 116 P+++K L YR++ + + + + G ++ Sbjct: 92 VPSSIKSLTVNCMFELYRENELKHR---RTVAGRKHALEVAYNLHVKASLGHRAVAQLDR 148 Query: 117 KHIRSGVESRKHTPSSA-IQFLTSMRVLFKWAVRQEY---VAINPCLSVERPKRKTEGIR 172 K +RS + A + ++ ++ + + E + + P Sbjct: 149 KEVRSFFRELEDKGYCAHNKAVSVLKAACNYVIDFEDAGLILNPFERIKKMPGVTRSRYL 208 Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 + + ++ + L++G R ++ + + + T T Sbjct: 209 TYQEAGQLMKALEYASNQDVADIYRMALFTGARLTNVKTMEWKDINLSNAVWLIPATRTK 268 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI--------WFKAKATKAG--- 281 L ++ ++ + + +KA +AG Sbjct: 269 TNQIYEIPLHPLAVYLLRKRQKTCPSSHFVFPSKQKSKYGYITGGDSVWKAAIKRAGLYH 328 Query: 282 ----VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + H +R+ AT +GA + ++ Y Sbjct: 329 DNPNIRPRPHDLRRTFATWQIQSGADVSVVSKALCHTSLKHTMVYA 374 >gi|157158542|ref|YP_001463323.1| phage integrase family site specific recombinase [Escherichia coli E24377A] gi|157080572|gb|ABV20280.1| site-specific recombinase, phage integrase family [Escherichia coli E24377A] Length = 342 Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 54/335 (16%), Positives = 105/335 (31%), Gaps = 38/335 (11%) Query: 5 LRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64 +LPP V K K YYF+ I L ++ + ++ + Sbjct: 11 NKLPPRVYKN-----KYSYYFKPTPRECITLGKINDLSIAQVWVKYEEILNDAIDV---- 61 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 T L +++ S ++ L ++ + + +++ G + H+R ++ Sbjct: 62 ----MTFSKLWNKFLNSTYYLELGQRTQKDYLQHQKKLLAAFGKMKADNVKPAHVRLYMD 117 Query: 125 SRKHTPSS-AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 R + A SM +F+W + YV NPC + + R + D + Sbjct: 118 KRGLKSKTQANHEKASMSRVFRWGYERGYVKGNPCQG---VSKFSLKPRDYYFTDEEYIA 174 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 + + A E R D + + + I+ KTG + + Sbjct: 175 IYQEASPVLQCAMEIAYLCATRIGDIRKLTWDQVMSKGLFIQQGKTGKKQIKQYSERLTF 234 Query: 244 LLAMTPI--GKETFFINNDKQKMNATQFSIWFKAKATKA------GVNKSAHGVRKFSAT 295 L G+ N + + T F+ ++ A + + H + Sbjct: 235 ALEQAKSLGGQHFVVCNKYGGQYSYTGFNDIWRKARAAASEKLGYPITGTFHDL------ 288 Query: 296 ISADAGATA-----HELMATYGWKTVDQAETYTKG 325 G + E G KT Q TY + Sbjct: 289 --KAKGISDYDGSSKEKQLFSGHKTEAQVLTYDRK 321 >gi|297748991|gb|ADI51537.1| Integrase/recombinase (XerC/CodV family) [Chlamydia trachomatis D-EC] gi|297749871|gb|ADI52549.1| Integrase/recombinase (XerC/CodV family) [Chlamydia trachomatis D-LC] Length = 308 Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 33/266 (12%), Positives = 82/266 (30%), Gaps = 24/266 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMR 141 ++ S ++ ++++ +I + + K + ++ + L +++ Sbjct: 31 RGISPLSVQAYCQDVLLFLQRASIEATDRINQESVFLFVEKCHKAKESETTLARRLIALK 90 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--------SEGSQPR 193 V F + + + P + E PK + E++ S+ Sbjct: 91 VFFHFLKDAKMLDQQPFI--EHPKIWKRLPSILSTEEVNSLLDQPLNIPNLDTHIASRDA 148 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL--------- 244 +G+R S+ C + + ++ + + T + + Sbjct: 149 AILYTFYATGIRVSELCDLCIGDISDDFIRVTGKGRKTRLVPISIKAKQAIDAYLSSFRD 208 Query: 245 -LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGA 302 L +E F++ +K++ + A + S H +R AT + A Sbjct: 209 ELQKKNPSEEHVFLSIRGKKLDRSCVWKRITFYAKLVTTKRISPHSLRHAFATHLLNNHA 268 Query: 303 TAHELMATYGWKTVDQAETYTKGADR 328 + G + E YT A Sbjct: 269 DLRIIQEMLGHSRISSTEIYTHVASE 294 >gi|325924348|ref|ZP_08185892.1| site-specific recombinase XerD [Xanthomonas gardneri ATCC 19865] gi|325545213|gb|EGD16523.1| site-specific recombinase XerD [Xanthomonas gardneri ATCC 19865] Length = 358 Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 53/354 (14%), Positives = 111/354 (31%), Gaps = 31/354 (8%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 +T G RK + + + YI + TT++ Sbjct: 6 KTPAGAWKAVIRKTGWP-PAIKTFRTKRDAEDWARRTEDEMVRGVYIRRAGSERTTVEAA 64 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE---------- 124 + Y ++IS + +I+ G + +T + + + Sbjct: 65 MRRYLAEVTP-GKRPVTQISEVRRAEVLIKHLGRYSLAAVTAEIVARFRDERLAGDLDAQ 123 Query: 125 --SRKHTPSSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQ 180 R + ++ L + +F A+++ + +P L + RP R + Q Sbjct: 124 GQRRPRSNNTVRLELALLGHMFTVALKEWGLGLIHSPVLGIRRPPPGPGRDRRLIPHEEQ 183 Query: 181 QFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVE 236 + S P L + L +G+R S+ + + K G+ TV Sbjct: 184 RLLRAVDGHSNPMLGWIVRLALETGMRASELVGLRRSQVDLVRRVARLQQTKNGSSRTVP 243 Query: 237 LPDGFMKLLA--------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAH 287 L +++L + K + QF+ + +G+ + H Sbjct: 244 LTQEAVRVLRAALANPVRPIDTDLLFYGEPGRDGKRRSYQFNPAWMKLKRDSGMADLHFH 303 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 +R + + +AG + E+ A G K++ YT R + R+ Sbjct: 304 DLRHEAISRLVEAGLSDQEVAAISGHKSMQMLRRYTHL--RAEDLVSKLDRLGR 355 >gi|270292983|ref|ZP_06199194.1| putative integrase/recombinase XerD [Streptococcus sp. M143] gi|270278962|gb|EFA24808.1| putative integrase/recombinase XerD [Streptococcus sp. M143] Length = 298 Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 35/278 (12%), Positives = 82/278 (29%), Gaps = 31/278 (11%) Query: 74 LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132 LIS Y L+ ++ ++++ Q + DY + + + ++ Sbjct: 5 LISTYLDYCKTHKRLSSHTIRAYKNDLMQFY----NSDYDNVESY--IEHLTQSNIKTNT 58 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVER-PKRKTEGIRPWTKEDMQQFK-------- 183 + + M+V + + Q + NP + + + + + ++ Sbjct: 59 LRRKIACMKVFYNYLKYQNIIEENPFNQLRFQFRTEKILPKTIPYDVLKSIFLYLEQRVV 118 Query: 184 -----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVE 236 + L LL +G+R S+ C ++ + N I + I Sbjct: 119 LSKTDYQKQHAERNLLIISLLLSTGIRISELCHIHLKDINLSNKTLHIIGKGKKERILFL 178 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQ------KMNATQFSIWFKAKATKAGV--NKSAHG 288 LL F + ++ + K + + + H Sbjct: 179 GDQKTFNLLETYINKTRNEFNDFLFPGKHSLKPLSEQSVRLILKRIVEQNSLFRTITPHM 238 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 R AT+ D + G ++ + YT + Sbjct: 239 FRHSFATMLLDNDVDIRYIQQILGHSSISVTQIYTHVS 276 >gi|257458544|ref|ZP_05623679.1| integron integrase [Treponema vincentii ATCC 35580] gi|257443978|gb|EEV19086.1| integron integrase [Treponema vincentii ATCC 35580] Length = 426 Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 37/304 (12%), Positives = 81/304 (26%), Gaps = 57/304 (18%) Query: 84 WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT----PSSAIQFLTS 139 + ++ ++ + + IR+ D + + + I V SS Q L + Sbjct: 121 AKHYSKRTQEAYSYWISRFIREHKDKNLKAFSDAEINPFVSRLATKEKVAASSQNQALAA 180 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199 + L+K + + + ++ K+ + + G RL Sbjct: 181 LLFLYKNILGLTIQSPENIIRAKKSKKLPAVLSREETAKIFSLLPENDYGLFIRLL---- 236 Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQ------------------------KTGTIITV 235 +G+R +S R VQ + + I + I Sbjct: 237 YGTGMRLMESLRLRVQDIDFDKNEITVHCGKGAKDRKTMLPVSLKFPLQKHLENVRRIHE 296 Query: 236 ELP-----------------------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272 + + + + ++ + Sbjct: 297 ADCKDGFGLVPLPSALAKKYPNAGKTWAWQWVFPQARRWQNKETGEQGRHHIDPSVIQRT 356 Query: 273 FKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 ++G+ K H R AT ++G + G V YT +R Sbjct: 357 LHEAVLRSGIPKPIGCHTFRHSFATHLLESGYDIRTIQELLGHSDVSTTMVYTHVLNRGG 416 Query: 331 LGIK 334 LG++ Sbjct: 417 LGVQ 420 >gi|118464288|ref|YP_880725.1| integrase [Mycobacterium avium 104] gi|118165575|gb|ABK66472.1| integrase [Mycobacterium avium 104] Length = 368 Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 44/317 (13%), Positives = 97/317 (30%), Gaps = 30/317 (9%) Query: 56 PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKI 114 P E + + TL+ + + LA +R +++ + + ++ GD I Sbjct: 55 PPAERAARRQAEKLTLRTYAKTWLDNK--TKLARRTRDNYQGHLDNHVLPALGDLGLADI 112 Query: 115 TTKHIRSGVESRKHTPSSAI-QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 T +H+R+ + + Q + +F AV + + NPC + K Sbjct: 113 TPEHVRTWFAGLGNEHETRNAQAYAVLNGVFNTAVADDLIDRNPCRIRGAAQVKHARRSV 172 Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL---------------- 217 + Q RL + GLR + + Sbjct: 173 VLLDATQLTALAEKMPDDARLGVLLAGWCGLRKGEVFALRRGDVAADGSSVRIERSVTYR 232 Query: 218 -QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA------TQFS 270 + + P +L + + +F Sbjct: 233 EGRFEVGPTKTRESRRVVSVPPHVRPAVLEHLQRHVADGDDALVFVEPSTGSFAGEKRFR 292 Query: 271 IWFKAKATKAG-VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +++ G + H +R + ++A GAT ELM G + + + Y A+ Sbjct: 293 TAWESARAAIGQPDMHFHDLRHAAGVMAAQTGATVRELMDRLGHTSPNMSMRYQHTAEGR 352 Query: 330 RLGIKNSRRISSVVDSD 346 + + ++S++ ++ Sbjct: 353 AAAL--ADKLSALASTN 367 >gi|46202152|ref|ZP_00053672.2| COG0582: Integrase [Magnetospirillum magnetotacticum MS-1] Length = 409 Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 57/387 (14%), Positives = 117/387 (30%), Gaps = 57/387 (14%) Query: 17 RHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 + GK I+ ++ G+R+ ++++ + + K+ ++ + T++ Sbjct: 4 KSGKPIWCVEYKAPDGKRVTKSTFVSKREAESFLAEI--TVEKKRGVHVAERDSITVEKA 61 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE--------- 124 + K A L +++ +E + I K G K+T + + + Sbjct: 62 AENWLKDAEAAGLERSTQEQYERHVRIYINPKLGTTKLSKLTLADVSNFRDDVTAGWEGE 121 Query: 125 --SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT---------EGIRP 173 R +P+ A + TS+R + A + +VA N C + R K+ I Sbjct: 122 GGKRIGSPAMAGKVFTSLRSIISLAQEKGFVATNVCAAARRKKKSKRHAPTNGAAMRIPT 181 Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------NNIFSI 224 + + + + + + +GLR S+ ++ Sbjct: 182 IPEIEALEKAAAEHYPGKMHAMLSTAILTGLRLSELRGLRWANVDLDAGKLQVVERANEW 241 Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM-----------NATQFSIWF 273 + T K L T + ++ K +A+ F Sbjct: 242 GEIGSPKSETSWRTMDMGKPLVATMRAWKLAQPLAERGKNLVFPNGAGNVESASNLHHRF 301 Query: 274 ----KAKATKAGVN----KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 + +A G + S H R A+I G T E+ G T TY Sbjct: 302 VHPVQVQAKLIGEDEDTRFSWHDFRHLYASIHIANGRTVVEVQHLLGHSTPSTTLNTYAH 361 Query: 325 GAD---RIRLGIKNSRRISSVVDSDDP 348 R + + P Sbjct: 362 LFQATGEKRNAGDDIAAALFGASQNKP 388 >gi|118463716|ref|YP_881470.1| phage-related integrase [Mycobacterium avium 104] gi|118165003|gb|ABK65900.1| phage-related integrase [Mycobacterium avium 104] Length = 402 Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 47/358 (13%), Positives = 91/358 (25%), Gaps = 36/358 (10%) Query: 1 MTPSLRLPPFVTKE-----RTRHGK------------IIYYFRKGHGRRIRLPYPHESTF 43 MT L V R HG + R + Sbjct: 1 MTQKRNLRAGVEDRWNKTVRDEHGNPQTVPSATYGKGKRWRARYVDEQGREHVQSFTRKV 60 Query: 44 IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103 +T +PR T++ + + + ++ QI+ Sbjct: 61 DAQQWLTNQTATIVAGTHVAPRDAKLTVQQWCDTWIEGYKVHR--EGTVREARTHIRQIV 118 Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLS 160 + GD ++ +++ + A + + + AV + NPC Sbjct: 119 TEFGDTPLTQVRPSQVKAWTARLRADGMKASYIYALHSRLSQIMADAVHDGVLGRNPCSR 178 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY------SGLRCSDSCRAGV 214 P + T E + + + + SGLR SD Sbjct: 179 RTAPPMGKAKVYVATTEQVWALHDAVPDHLKVAVLLGAFAGLRVAEVSGLRVSDVDFIRG 238 Query: 215 QHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274 +S K KT + LL + K + + Sbjct: 239 VVHPKQQWSDKPLKTEGSSAPIPIPQDLALLLSASVQKYPAEMMVTNGLGTDRCGPWIIE 298 Query: 275 AKAT--KAGVN-----KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 + G++ S H +R + A++ G + A + +TY+ Sbjct: 299 RAIRDVRRGIDGLPEGFSFHDLRHYLASLLIARGCDVKTVQARLRHSSAKTTLDTYSH 356 >gi|298206605|ref|YP_003714784.1| putative site-specific recombinase [Croceibacter atlanticus HTCC2559] gi|83849235|gb|EAP87103.1| putative site-specific recombinase [Croceibacter atlanticus HTCC2559] Length = 295 Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 41/276 (14%), Positives = 98/276 (35%), Gaps = 25/276 (9%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVES 125 T+K + Y + ++++ ++ + D + R+ + I IRS + S Sbjct: 3 TIKAFLD-YLRLE--KKYSIHTINAYNNDLVALSDFVSREFSETSINNIPYALIRSWIIS 59 Query: 126 RKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + + + ++S++ + + + E + ++P + + K + P++K+++ Sbjct: 60 LVDSGISNRTINRKVSSLKSYYSFLQKIEELEVSPLIKHKSLKVEKRLQVPFSKKEVSDV 119 Query: 183 KS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVEL 237 S E + + E +G+R S+ + + N + K + L Sbjct: 120 LSGFTLNSFEDYRDKAIVELFYSTGMRRSELINLKLSDINIANHYVKVLGKRNKERIIPL 179 Query: 238 PDGFMKLLAMTPIGKE--------TFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAH 287 + L K+ F+ + K+ T + + KS H Sbjct: 180 IESVSLTLRQYFEIKDAEFKESSKWIFVTSKNDKVYETLVYRIINNYFSKVSSKIKKSPH 239 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 +R AT GA + + G ++ + YT Sbjct: 240 LLRHSFATHLLGEGANLNAVKDLLGHSSLAATQVYT 275 >gi|309785081|ref|ZP_07679714.1| integrase [Shigella dysenteriae 1617] gi|308927451|gb|EFP72925.1| integrase [Shigella dysenteriae 1617] Length = 339 Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 56/327 (17%), Positives = 103/327 (31%), Gaps = 20/327 (6%) Query: 22 IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR---KKPTTLKWLISEY 78 Y G+ L A + + + R TL + Y Sbjct: 6 YCYRDPRTGKEFGLGRDRRIAITEAIQANIELLSDSGRESLIDRIKGADSITLHAWLDRY 65 Query: 79 RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQF 136 + + + + S I RK D I+TK + + + + + +SA Sbjct: 66 ETILSERGIRPKTLLDYASKIRAIRRKLPDKPLTDISTKEVAAMLNTYVAEGKAASAKLI 125 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196 +++ +F+ A+ + +VA NP + K + R E ++ + + RLA Sbjct: 126 RSTLVDVFREAIAEGHVATNPVTATRTAKSEVRRSRLTANEYVEIYHAAEPLPIWLRLAM 185 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL---------LAM 247 + + +G R D CR + +N I+ KTG + + L L Sbjct: 186 DLAVITGQRVGDLCRMKWSDINDNHLHIEQGKTGAKLAIPLTLTIDALNISLVDTLQKCR 245 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAHGVRKFSATISADAGA 302 ET + ++ S +F +G+ + H +R SA Sbjct: 246 EASSSETIIASKHHDPLSPKTVSKYFTKARNASGLSFDGDPPTFHELRSLSA-RLYRNQI 304 Query: 303 TAHELMATYGWKTVDQAETYTKGADRI 329 G K+ A Y R Sbjct: 305 GDKFAQRLLGHKSDSMAARYRDSRGRE 331 >gi|271965872|ref|YP_003340068.1| integrase family protein [Streptosporangium roseum DSM 43021] gi|270509047|gb|ACZ87325.1| integrase family protein [Streptosporangium roseum DSM 43021] Length = 339 Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 44/314 (14%), Positives = 106/314 (33%), Gaps = 43/314 (13%) Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG--------DFDYRKITT 116 R P L +++E+ + L+ ++ + + + + D + R ++ Sbjct: 6 RPVPVGLSEVVAEFLSALRTKKLSSHTVAGYRRDLELVAGLAAAAAGVGVADLEVRSLSG 65 Query: 117 KHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 + +R+ +P+S + ++ + V + + NP +V RPK+ + +P Sbjct: 66 RLVRTAFAEFSGPRSPASVNRAWSAWNQFLSFCVAEGLLEGNPMAAVPRPKQPAKAPKPL 125 Query: 175 -----------TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223 + ++ + + L +G+R ++ + + + Sbjct: 126 LGDGSASATLLERIAAGARRARDPWVERDLVVLALALVTGMRSAELLGLTLGSIGGSPGD 185 Query: 224 IKTQKTGT---IITVELPDGFMKLLAMTPIGKETFF------------INNDKQKMNATQ 268 + Q G ++ + +L+ + F ++ + + Sbjct: 186 RRIQVVGKGGRSRSLPIEAPVERLVERYLHSRMVRFGLSALPRSAALLVDTGNEPLRRGG 245 Query: 269 FSIWFKAKATKAGVNKSA------HGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 + AGV+ H +R AT A+ GA+AHELM G ++ + Y Sbjct: 246 LQYLVRQCYRHAGVHDRVQRGTLVHALRHEFATRLAERGASAHELMELLGHSSIVTGQAY 305 Query: 323 TKGADRI-RLGIKN 335 R R + Sbjct: 306 IASTAREVRRAAQG 319 >gi|87302036|ref|ZP_01084870.1| Integron integrase; Phage integrase; Phage integrase N-terminal SAM-like domain [Synechococcus sp. WH 5701] gi|87283604|gb|EAQ75559.1| Integron integrase; Phage integrase; Phage integrase N-terminal SAM-like domain [Synechococcus sp. WH 5701] Length = 323 Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 40/305 (13%), Positives = 82/305 (26%), Gaps = 52/305 (17%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS-S 132 L+ +R+ A + S+ + + +R G R++ + I + + S Sbjct: 9 LMDRFREEMQVRHYARRTITSYAQWVKRFLRFHGMRHPREMGEEEINAFLSHLATEGQVS 68 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 A ++ L + V R +++ T +++ S Sbjct: 69 ASTQNQALSALLFLYRTVLSGDVGNLEGVVRARQRKRLPVVLTVAEVKAVLS--QLEGVE 126 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--IKTQKTGTIITVE-------------- 236 +L + L SGLR ++ R V+ + +++ K Sbjct: 127 QLVAQLLYGSGLRLMEALRLRVKDVDCQARQLTVRSGKGDKDRVTMLPTSVVEPVQAYLL 186 Query: 237 -------------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265 + + + + ++ Sbjct: 187 AVREIHRADLAAGWGRVMLPLALGRKYPTAASEWAWQWVFPQAHRWHDRNNRTEGRHHID 246 Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + K AGV+K S H R AT + G + G V YT Sbjct: 247 PSLIQKAVKRAVLSAGVSKQASCHTFRHSFATHLLERGHDIRTIQELLGHSDVKTTMIYT 306 Query: 324 KGADR 328 +R Sbjct: 307 HVLNR 311 >gi|314933994|ref|ZP_07841359.1| integrase [Staphylococcus caprae C87] gi|313654144|gb|EFS17901.1| integrase [Staphylococcus caprae C87] Length = 354 Score = 102 bits (255), Expect = 7e-20, Method: Composition-based stats. Identities = 36/354 (10%), Positives = 91/354 (25%), Gaps = 27/354 (7%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 + +GK Y F R + + + A A T+ Sbjct: 4 RKQPNGKWYYDFGYEGKRYKKKGFKTKREATEAESIAKNKVM-----RGLIINNKTSFIK 58 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 +++ K ++ S +F + +Q + +T + + + Sbjct: 59 YYNDWIKVNKENVVSEKSYATFNNAINQFKLFLETENISDVTLSDLNTTFYRKFIKWYGE 118 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK---------TEGIRPWTKEDMQQFKS 184 ++R + + AI L + P K + + + Sbjct: 119 NHATETVRKIHNCLKQSIDDAIQEGLMHKNPTYKVVVKGRIPAQKEDEKFMSIENFVNLK 178 Query: 185 FWSEGSQP--RLAFEFLLYSGLRCSD-------SCRAGVQHLQNNIFSIKTQKTGTIITV 235 + + + L+ +G R + + +T I Sbjct: 179 KYVSDTPIQSYIFVYILIITGGRFGEVQKLSRSDLDYKNNTIHLPGTKTETSDRIVDIPA 238 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294 + K L+ P+ N + S + + + + H +R Sbjct: 239 TDMNMLRKTLSKMPVSLSNQLFNTGVGLITHNAVSKVLQKFCLENKIGKYTLHSIRHTHC 298 Query: 295 TISADAGATAHELMATYGWKTVDQAE-TYTKGAD--RIRLGIKNSRRISSVVDS 345 + + + + G K + Y+ D + K + ++ + Sbjct: 299 SYLLHNDVSIYYISKRLGHKNIKTTMDVYSHLLDEVEQKEREKAVNVLENMNGN 352 >gi|256957791|ref|ZP_05561962.1| conserved hypothetical protein [Enterococcus faecalis DS5] gi|256948287|gb|EEU64919.1| conserved hypothetical protein [Enterococcus faecalis DS5] gi|315035859|gb|EFT47791.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0027] Length = 389 Score = 102 bits (255), Expect = 7e-20, Method: Composition-based stats. Identities = 41/383 (10%), Positives = 101/383 (26%), Gaps = 53/383 (13%) Query: 14 ERTRHGKIIYYFRKG---HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 ER + G G +G IR+ E + L + E T Sbjct: 9 ERLKSGNYRLRVTVGYNENGNPIRINKTVEIKSQRKAYAELDDWIEELEEHGYEDISTIT 68 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH- 128 + + K L + + + + + R+I I+ V + + Sbjct: 69 FENFYNNMWKKEAKTILEPRTIREYSDIIDKRFLPSFKNKKIREIKPFQIKDIVIAAQPL 128 Query: 129 -------TPSSAIQFLTSMRVLFKWAVRQEYVAINP----CLSVERPKRKTEGIRPWTKE 177 + + ++L ++ +F A Q + + + +K P++ E Sbjct: 129 SKKNTTLSRKTKKRYLNALSSVFNVARDQYRIITHNPVSDVRLPKESVKKKGTPEPYSIE 188 Query: 178 DMQQFKSF--WSEGSQPRLAFEFLLYSGLRCS--------------DSCRAGVQHLQNNI 221 +++ + + +G R + + + + + Sbjct: 189 EVKLMLDALEEHANLKTKALVMTAFITGAREGEIAAVEESDFDFSAMTVQFHQRIVLDEN 248 Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT-------------- 267 + + + L + + +++ Sbjct: 249 KKYQQRDGLKASDSKTIPVPRSYLELMKTFMSINQKARKELRIDPKHKYVFGAPEGNFEL 308 Query: 268 --QFSIWFKAKATKAGVNK-SAHGVRKFSAT-ISADAGATAHELMATYGWKTVDQAE-TY 322 + +AG+ + H +R SA+ + AD + G K Y Sbjct: 309 PTSLYRNWNRFIKRAGLRQIRFHDLRHTSASFLLADPTIPIKTVQELLGHKDYRTTMNIY 368 Query: 323 TKGADRIRLGIKNSRRISSVVDS 345 + + S R S ++ Sbjct: 369 GHALEETKR--TASDRFSEFLNE 389 >gi|24373597|ref|NP_717640.1| phage integrase family site specific recombinase [Shewanella oneidensis MR-1] gi|24347925|gb|AAN55084.1|AE015645_10 site-specific recombinase, phage integrase family [Shewanella oneidensis MR-1] Length = 319 Score = 102 bits (255), Expect = 7e-20, Method: Composition-based stats. Identities = 32/297 (10%), Positives = 69/297 (23%), Gaps = 50/297 (16%) Query: 80 KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 + ++ + ++ + I G + T+ + + + + AI Sbjct: 13 QEMRMRGYSIRTEKTYLYWIKAFINFHGKRHPETMGTEEVAQFLTFLANQRNVAINTQKI 72 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199 + ++ L ++ + ++ + RL E L Sbjct: 73 ALNALAYLYQKHLHHELGDLGFCYATKQRYLPTVLSPSEIS--LILNELDGRDRLIIELL 130 Query: 200 LYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMK-------------- 243 SGLR S+ R +Q + +++ K L + Sbjct: 131 YGSGLRVSECLRLRIQDIDIESASLTVRDGKGHKDRQTILSHRCAEKLTTYIEKAIKIQQ 190 Query: 244 -------------LLAMTPIGKETFFINNDKQKMNATQFSIW-------------FKAKA 277 L +T + + + Sbjct: 191 DDNQQGIGPSLPNALERKYPNAFRQHGWMFIFPSTSTCINPYTGTLCRHHLHQSVIRKAL 250 Query: 278 TKA------GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 A + H R AT AG + G V + YT + Sbjct: 251 GNAVRNIQMNKRVTCHTFRHSFATHLLQAGRDIRSVQELLGHNDVSTTQIYTHVLGQ 307 >gi|317051491|ref|YP_004112607.1| integrase family protein [Desulfurispirillum indicum S5] gi|316946575|gb|ADU66051.1| integrase family protein [Desulfurispirillum indicum S5] Length = 330 Score = 102 bits (255), Expect = 7e-20, Method: Composition-based stats. Identities = 43/286 (15%), Positives = 90/286 (31%), Gaps = 26/286 (9%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSG--VESRKHTPS 131 Y K L+ + + + + + + +R ++ + S Sbjct: 47 QRYLKYE--CGLSQQTIDRYLFEMRRFLEFLQQEELTVETAGPRELRMYLTHKAMGKSKS 104 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKEDMQ------QFK 183 + L +R +F W + ++ NP ++ PK K E ++ + Sbjct: 105 TYANVLCYVRAIFNWLQYEGFLEENPARDLKSPKGAYKNEMPVFLKDDEQKRLRAYLNGL 164 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFM 242 + +LY+G+R S+ C+ ++ T+K + + D M Sbjct: 165 ERNFHNDRDTAVMLCVLYTGMRASEICQLTRRNFHRQGKAFQITRKGQKEQILPIADALM 224 Query: 243 KLLAMTPIGKE------TFFINNDKQKMNATQFSIWFKAKATKAGVN----KSAHGVRKF 292 ++L FF + + + AG++ + AH +R Sbjct: 225 EILQFYWYEHMDSIDSDFFFCRTNGKPLTPYIIWQRTSLHIKAAGIDLPRKRGAHLLRHT 284 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337 AT G E+ G V E YT + + +R + Sbjct: 285 FATNLVRKGVNLIEIQRLLGHSHVAVTEIYTHTSPEGLRSAVSVLD 330 >gi|225568371|ref|ZP_03777396.1| hypothetical protein CLOHYLEM_04448 [Clostridium hylemonae DSM 15053] gi|225162819|gb|EEG75438.1| hypothetical protein CLOHYLEM_04448 [Clostridium hylemonae DSM 15053] Length = 330 Score = 102 bits (255), Expect = 7e-20, Method: Composition-based stats. Identities = 41/279 (14%), Positives = 94/279 (33%), Gaps = 15/279 (5%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI----RSGVESRKHTP 130 + E+ S + + + +++ + + + IT +I R+ R+ T Sbjct: 55 LEEFLMSKALEGKSPGTVKRYRYELYRLLSYI-NKNVKDITDGNISGYMRTYKAIRQVTN 113 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 + F W ++ + NP VE K + + +P+T E+ + + Sbjct: 114 QTLKNVRAVYSSFFIWLRDRDRIRKNPMALVEAIKVEQKIRKPYTDEERELLL-RSCKTL 172 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVE----LPDGFMKLL 245 + + EF + +R S+ + + I K TV + L Sbjct: 173 RDKAMMEFFYSTAVRVSELAALNREDVHFVSKDLIVMGKGNKERTVYLNDRTNMYMKEYL 232 Query: 246 AMTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATISADAGA 302 + + ++ T + AGV ++ H R+ +AT + + G Sbjct: 233 ESRTDSNQALFVSLKKPHGRLGKTGIEDIIRRTGQIAGVERAYPHRFRRTAATNALNRGM 292 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 E+ G ++ Y D+ + + + +S+ Sbjct: 293 PVQEVAQLLGHAKLETTMVYC-SVDQAGVKYHHQKYLSA 330 >gi|53717770|ref|YP_106756.1| prophage integrase [Burkholderia pseudomallei K96243] gi|52208184|emb|CAH34115.1| prophage integrase [Burkholderia pseudomallei K96243] Length = 376 Score = 102 bits (255), Expect = 7e-20, Method: Composition-based stats. Identities = 43/324 (13%), Positives = 102/324 (31%), Gaps = 24/324 (7%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 +R ++G ++ G RIR S A A ++ + T Sbjct: 5 KRQKNG-PWWFDLSIDGSRIR-QSSGTSDRRAAEELAAKVASDYWRQKKLGERPAVTWDA 62 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK------ 127 + + K ++ + + + R I + I++ +E++ Sbjct: 63 AVVHWLKQNQHQRSLETTKQR----LRWLTDQLKGENVRNIDRERIQALIETKAAEKYRG 118 Query: 128 --HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 ++ + + ++ V+ + ++ P + + + + + T+ Q+ Sbjct: 119 SPVAGATVNRHMAALSVILHHCHAEGWIDAVP--PIRKLRENSARLTWLTRAQAQRLL-- 174 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGF 241 + R F L +GLR S+ + K G +I+V L + Sbjct: 175 EELPTHLRQMARFALATGLRESNVRLLEWAQVDRERALAWIHADQAKAGKVISVPLNEDA 234 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADA 300 + +L + + + ++ ++ +AG+ H +R A+ A Sbjct: 235 LGVLREQQGQHKRYVFVYKGAPI-GRIYNHAWQKACMRAGLSGLRFHDLRHTWASWHVQA 293 Query: 301 GATAHELMATYGWKTVDQAETYTK 324 G L GW + Y Sbjct: 294 GTPLPILQQLGGWASYQMVLRYAH 317 >gi|229004126|ref|ZP_04161927.1| integrase/recombinase [Bacillus mycoides Rock1-4] gi|228756987|gb|EEM06231.1| integrase/recombinase [Bacillus mycoides Rock1-4] Length = 316 Score = 102 bits (255), Expect = 7e-20, Method: Composition-based stats. Identities = 33/281 (11%), Positives = 78/281 (27%), Gaps = 29/281 (10%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-------TKHIRSGV 123 L++ + E+++ + +L+ + + + ++ + + + ++R Sbjct: 13 LRFAMKEFQEEKEYNNLSHRTIEVYMATLNEFRNFCSEQEIVDLRDIREATVKAYLRYCK 72 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQF 182 ++R + + L +R+ F + +E + + +P ++ I +T +QQ Sbjct: 73 KTRGNGVVTCNSKLHHLRIFFNYWQNEEVIEHKDNPVRKLKPAKEDTKIEVFTDYHIQQM 132 Query: 183 KSFWSE---------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233 ++ G + LL +G+R + + + ++ Sbjct: 133 LRYYRRLKTRDKSFFGYRDHAIIVLLLSTGIRLGELVNIQWKDIDLVNQTVVLFGKARRQ 192 Query: 234 T------------VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 E K L P T Sbjct: 193 QSIPITDKLTKEICEWRIFVEKELGSLPQYLFTSREGKQLTPNAVKLIFQRLSKVMNFKD 252 Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 V S H R A G L + E Y Sbjct: 253 VRLSCHTFRHSFAHRCIMQGMDVFTLQKLLRHSNLRMTERY 293 >gi|315167303|gb|EFU11320.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecalis TX1341] Length = 377 Score = 102 bits (255), Expect = 7e-20, Method: Composition-based stats. Identities = 57/370 (15%), Positives = 111/370 (30%), Gaps = 46/370 (12%) Query: 11 VTKERTRHGKIIYYFR-----KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65 + K + G Y F + R AL+ + + + Sbjct: 4 IKKYTKKDGSTAYMFNAYLGVDPVTGKSRRTTRRGFRTQKEAKLALSRLELEVDSKGFVK 63 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124 + +T K + + ++ + E F I+ + G+ K+T + V Sbjct: 64 QNYSTFKDVYELWYAQY-VNTVKPITAGHTERMFRLHILPEFGNIKINKLTKLMCQKAVN 122 Query: 125 SRKHTPSSAIQFLTSMRV-LFKWAVRQEYVAINPCLSVERPKRKT------EGIRPWTKE 177 SA L S+ + +AV Q+ + INP V PK+ + ++ Sbjct: 123 KWS-KEYSAFYLLKSITQKMLHYAVAQDIIDINPMQYVVMPKKDKTNETKKKQFLELSEL 181 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII---- 233 ++ + Q L F L ++G+R + + + + + KT T I Sbjct: 182 KDFLAEAKETLNFQDYLIFRVLAFTGIRKGELYALTWEDINISYKQLTVNKTLTRIGKEY 241 Query: 234 ------------------------TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269 + +LL K +K N + Sbjct: 242 IISTPKTKASNRTIGLDDTTVSELIIWKKHQKQELLKYGFKTKSNDKQLIFHRKNNTLHY 301 Query: 270 SIWFKAKAT-KAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGA- 326 + + + + S H R A++ ++GAT ++ G V+ YT Sbjct: 302 PEYINFLLSSEMKTSLSPHSFRHTHASLLFESGATIKDVQKRLGHTNVNTTMDIYTHVTK 361 Query: 327 DRIRLGIKNS 336 R I Sbjct: 362 SSERKAIDKL 371 >gi|268609386|ref|ZP_06143113.1| putative integrase [Ruminococcus flavefaciens FD-1] Length = 328 Score = 102 bits (255), Expect = 7e-20, Method: Composition-based stats. Identities = 35/264 (13%), Positives = 79/264 (29%), Gaps = 14/264 (5%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRK 127 ++SE+ + + S + + G + ITT +R+ +K Sbjct: 51 DEILSEFLSAKRIEGCSEKSLNYYSKTITAALDSIG-KGIKHITTDDLRAYLTDYQAEKK 109 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + + + F W ++Y+ +P + K +T E+++ + Sbjct: 110 SSKVTMDNIRRILSSFFSWLEDEDYIIKSPVRRIHNVKTSKTIKETYTDENLELMRDNCV 169 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLA 246 E + + L +G+R + + N V L Sbjct: 170 E-LRDLAMIDMLASTGMRVGEMVLLNRSDIDFNERECVVVGKGDKERMVYFDARTKLHLQ 228 Query: 247 MTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISAD 299 + + +++ + + K G+ H R+ AT++ D Sbjct: 229 SYLASRTDSDSALFVSLRSPHKRLTIGAIELRLREMGRKLGISKVHPHKFRRTLATMAID 288 Query: 300 AGATAHELMATYGWKTVDQAETYT 323 G +L G + +D Y Sbjct: 289 KGMPIEQLQRLLGHQRIDTTLQYA 312 >gi|227876810|ref|ZP_03994919.1| phage integrase family protein [Mobiluncus mulieris ATCC 35243] gi|227842707|gb|EEJ52907.1| phage integrase family protein [Mobiluncus mulieris ATCC 35243] Length = 397 Score = 102 bits (255), Expect = 7e-20, Method: Composition-based stats. Identities = 53/372 (14%), Positives = 102/372 (27%), Gaps = 44/372 (11%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPK--------REYINSPR 65 E+ + G+ Y+RKG + + +++A + K E ++ + Sbjct: 26 EKLKSGRYRAYWRKGSIKVLADETFPNRQLASDWLAAQQVAIAKGLIDPELAEEELSPVK 85 Query: 66 KKPTTLKWLISEYRKSAHWG-SLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGV 123 T K Y + + S++S F + GD IT + ++ Sbjct: 86 ADVPTFKEWKETYLARREKEGGMKPKTIQSYKSCFKAHLEDTFGDMLINLITNQQVKDWY 145 Query: 124 ESRKHTPSSAIQ-FLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQ 180 S A + L AV + + K T+ R Q Sbjct: 146 NSFDGKKLGARKSTYRVFSALMNAAVDEGLIDASPVHVKGAVSKKPTTDNHRNIVATCDQ 205 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS----------------- 223 + + + R+A + LR + + ++ Sbjct: 206 VSRLAEAMPDEYRIAVLLAFWCSLRFGEITELRRKDVRFKGEKAVISVTRAVQYAAGFGY 265 Query: 224 ----------IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273 I+ I +L K +A + + + + F Sbjct: 266 TVGPPKSEAGIRDIAVPPTIVADLKGHIAKYVAPDKESLLVHSPASLVKWYSNKSMNGHF 325 Query: 274 KAKATK---AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 + HG+R T++ +GAT ELM G + Y Sbjct: 326 AKAKRAVPDLDQRFTFHGLRHSGLTLAGQSGATLAELMHRAGHANAETVMIYQHATQDRD 385 Query: 331 LGI-KNSRRISS 341 I + IS+ Sbjct: 386 AAIAEKMSAISN 397 >gi|171057464|ref|YP_001789813.1| integrase family protein [Leptothrix cholodnii SP-6] gi|170774909|gb|ACB33048.1| integrase family protein [Leptothrix cholodnii SP-6] Length = 339 Score = 102 bits (255), Expect = 7e-20, Method: Composition-based stats. Identities = 39/313 (12%), Positives = 84/313 (26%), Gaps = 38/313 (12%) Query: 64 PRKKPTTLKWLISEYRKSA--HWGSLAVNSRISFESYFDQIIRK----SGDFD----YRK 113 + P + L+ + +L+ + ++ F + Sbjct: 7 RKPAPPSFATLVQSFFAEHLTQQRALSPQTVAAYRDAFVLFLDFAQARLHKTPTTLSLAD 66 Query: 114 ITTKHIRSGVES----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169 +T I ++ R +T S L ++R K+A R++ A+ K Sbjct: 67 LTPALILDFLDHLERDRHNTVRSRNARLAALRSFLKFAARRDVTALQVVEHALGVPMKRF 126 Query: 170 GIRPWTKEDMQQFKS------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223 + ++ + + +L L +G R S+ V + + Sbjct: 127 ERPMFEFLTREEMLAVIGAPGADWVSQRDKLLLALLYNTGARVSEVIGVKVGDVVLAPAA 186 Query: 224 IKTQKT--GTIITVELPDGFMKLLAMTPIGKETFFINNDKQK------MNATQFSIWFKA 275 +V L +K++ + M + + Sbjct: 187 CVHLHGKGRKQRSVPLWRSTVKVIRAWLRFNPELTPTSALLPNRSGQAMTRSNVTQRLAL 246 Query: 276 KATK--------AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 AG S H +R +A +G + G ++ Y AD Sbjct: 247 AVKAAALTTPSLAGRTISPHCLRHSTAMHLLQSGVDISVIALWLGHESPATTHQYV-EAD 305 Query: 328 RIRLGIKNSRRIS 340 + K R+ Sbjct: 306 LA-MKEKALARLQ 317 >gi|146304382|ref|YP_001191698.1| phage integrase family protein [Metallosphaera sedula DSM 5348] gi|145702632|gb|ABP95774.1| phage integrase family protein [Metallosphaera sedula DSM 5348] Length = 286 Score = 102 bits (255), Expect = 7e-20, Method: Composition-based stats. Identities = 36/265 (13%), Positives = 78/265 (29%), Gaps = 26/265 (9%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----------- 126 + +S + + + + ++ D R +TT+ + + S Sbjct: 18 FMESLKFSGAGQGTIKLYSTAIQDFLQFV-KKDPRSVTTQDVIDWIGSLNSRKGRSRVVD 76 Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + ++ ++ ++R KW + S ER + E I Sbjct: 77 KRGRSATIRSYVIAVRRFLKWLGVNVKPPVPRIRSPERMALREEDIVAL---------LS 127 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMK 243 + ++ L+ +GLR S+ + + ++ K G V Sbjct: 128 ACRRLRDKVIVSLLVDTGLRSSELLSLRRSDVDLERMLIRVRETKNGEERIVFFTSRTAT 187 Query: 244 LLAMTPIGKETFFINNDK-QKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301 LL + ++ ++ K K G+ H +R AT + G Sbjct: 188 LLRQYLRKTQDKESDDAPLFNLSYQALYKLIKRLGRKTGLTWLRPHVLRHTFATNAIRRG 247 Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326 + G K + + YT Sbjct: 248 VPLPAVQRLMGHKDIKTTQIYTHLV 272 >gi|33600646|ref|NP_888206.1| integrase [Bordetella bronchiseptica RB50] gi|33568246|emb|CAE32158.1| integrase [Bordetella bronchiseptica RB50] Length = 319 Score = 102 bits (255), Expect = 7e-20, Method: Composition-based stats. Identities = 53/329 (16%), Positives = 109/329 (33%), Gaps = 35/329 (10%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 +PP V + +HG Y G+ RL T + Y ++PR Sbjct: 1 MPPCVYE---KHGAYYY---VKGGKWTRLA-ADLPTALAEYAR----------RFDNPRG 43 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 + L+ + L+ N+ ++ +I +F ++ KH+ + Sbjct: 44 G---MADLVEKVLTQVSPK-LSPNTIQQYKIAAARIKDAFAEFAPDQVRPKHVAALKVDM 99 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 TP+ A + L+ ++ +F +AV + V NPC+ ++R D + + Sbjct: 100 ADTPNMANRVLSFLKTVFVYAVEWQLVDSNPCIGIKRHNEGKRKRY---ITDAEYAAIYH 156 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246 + ++ + L +G R D L + + +KTG + V + Sbjct: 157 HANPRMQVIMDLLYLTGQRVGDVLAIKRSDLTEDGIVFEQEKTGAKLLVRWVPELRDAVV 216 Query: 247 MTP-------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISA 298 ++ K + ++ AGV + + H +R S T + Sbjct: 217 RANALNGNVLAPTLFRTRSHGKGAPSYGTTRDRWREAVEAAGVQDANIHDIRAKSLTDAK 276 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGAD 327 G G + + Y + + Sbjct: 277 RQGKD---AQLLAGHASPAMTDRYIRLRE 302 >gi|193212222|ref|YP_001998175.1| integrase family protein [Chlorobaculum parvum NCIB 8327] gi|254799328|sp|B3QM22|XERC_CHLP8 RecName: Full=Tyrosine recombinase xerC gi|193085699|gb|ACF10975.1| integrase family protein [Chlorobaculum parvum NCIB 8327] Length = 336 Score = 102 bits (255), Expect = 7e-20, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 84/302 (27%), Gaps = 50/302 (16%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRKH 128 + + +++ + ++ Q G + + + Sbjct: 19 WLEPFLSHLQAARNVSPKTVTAYRCDLLQYFSFLKEQAGLDRLEAVEPERVEVADVRLFM 78 Query: 129 T--------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 P S + L S++ +++ + ++ +P V P+ + R ++E+ + Sbjct: 79 GHLLDKGIQPRSIARKLASVKSFYRFLLETGRISSSPLSLVVTPRLDKKVPRFVSEEEAR 138 Query: 181 QFKSFW--------------------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220 Q + E + R E L GLR S+ + Sbjct: 139 QLFRRFESQEDNAALQGDGKKAEVRQFETFRDRAVLEVLYGCGLRLSELIALERADVDLV 198 Query: 221 IFS-IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN---------DKQKMNATQFS 270 T K V L + ++ L + FF Q Sbjct: 199 HGFLKVTGKGRKQRIVPLGEPAVEALRKYFEVRRNFFRIPLERTGESSRVFVTSRGRQLY 258 Query: 271 IWFKAKATKAGV-------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + TK + K+ H +R AT + GA + G ++ E YT Sbjct: 259 PMLVQRMTKRYLTPVSESEKKNPHILRHSFATHMLNGGADLKSVSEMLGHSSLTTTELYT 318 Query: 324 KG 325 Sbjct: 319 HV 320 >gi|154504725|ref|ZP_02041463.1| hypothetical protein RUMGNA_02232 [Ruminococcus gnavus ATCC 29149] gi|153794899|gb|EDN77319.1| hypothetical protein RUMGNA_02232 [Ruminococcus gnavus ATCC 29149] Length = 288 Score = 102 bits (255), Expect = 7e-20, Method: Composition-based stats. Identities = 32/275 (11%), Positives = 87/275 (31%), Gaps = 18/275 (6%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--- 128 + + + ++ +L S +++Y ++ + + +++T + +R + ++K Sbjct: 8 EKYLEQLEEAGKIRNLKDRSISCYKNYVSYFLKYQ-NKNPKELTCQDVRVFLLAKKEEGL 66 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 ++ + +++R ++ + I + + Sbjct: 67 KATTLNLYNSAIRFFYR-----NVLHILWDDITVPRMILEHKLPTVLTASEIDRLLDAVD 121 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLA 246 + + F + SG+R S+ + N ++ K L + +L Sbjct: 122 DIKYKAMFAVMYSSGMRVSEVIHLHYDDISRSNMQIHVRDTKNRMDRYTILSKRCLDILT 181 Query: 247 MTPIGKETFFINNDKQKMNATQFS-----IWFKAKATKAGVNK--SAHGVRKFSATISAD 299 K K + + + K + H +R AT + Sbjct: 182 QYWFEKGRPRGILFPNKFTGNYLTVSTLEQVMRRAVADTELPKAATPHCLRHSFATHLME 241 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334 G H + A G + E Y +++ +GI+ Sbjct: 242 QGIERHNIQALLGHRDPKSTEVYLHVSNKSLMGIQ 276 >gi|154496301|ref|ZP_02034997.1| hypothetical protein BACCAP_00589 [Bacteroides capillosus ATCC 29799] gi|150274384|gb|EDN01461.1| hypothetical protein BACCAP_00589 [Bacteroides capillosus ATCC 29799] Length = 301 Score = 102 bits (255), Expect = 7e-20, Method: Composition-based stats. Identities = 54/282 (19%), Positives = 93/282 (32%), Gaps = 26/282 (9%) Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128 TL + + G + +S E +I I ++S S Sbjct: 1 MTLGQWFPLWLDTYKRGVIRDSSLHQLELLARRIPADLMKRPLSAILPMDLQSFFNSFAA 60 Query: 129 TPSS--AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + S + T + LF AV E A NP V+ PK + + +T ++++ + Sbjct: 61 SASKSYVDKMGTLVNSLFAQAVENELCAKNPMRHVKIPKVQEQCRESFTFDELKLILRYA 120 Query: 187 SEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHL----------------QNNIFSIKTQK 228 + R+ A LL +GLR S+ L + + + + Sbjct: 121 LGYTPLRVSVAVITLLLTGLRRSELLGLKWSDLTADTLTVNRSVYLESGKPKVEEHRAKT 180 Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI---WFKAKATKAGVN-- 283 ++ T+ L L P E F + + + FS F +A + Sbjct: 181 ISSLRTIPLLPELSYKLHTLPKRSEFIFCSRNGTLWHPRNFSRDYTTFFRHLREAEPDAR 240 Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 S H R AT+S +GA + A G + YT Sbjct: 241 RLSPHCCRHTFATLSLASGADIRTVQALLGHANIKTTSRYTH 282 >gi|15802318|ref|NP_288344.1| integrase for prophage CP-933T [Escherichia coli O157:H7 EDL933] gi|15831871|ref|NP_310644.1| integrase [Escherichia coli O157:H7 str. Sakai] gi|187776266|ref|ZP_02801548.2| integrase for prophage CP-933T [Escherichia coli O157:H7 str. EC4196] gi|188024649|ref|ZP_02772961.2| integrase for prophage CP-933T [Escherichia coli O157:H7 str. EC4113] gi|189404109|ref|ZP_02787302.2| integrase for prophage CP-933T [Escherichia coli O157:H7 str. EC4501] gi|189406250|ref|ZP_02827228.2| integrase for prophage CP-933T [Escherichia coli O157:H7 str. EC508] gi|194430421|ref|ZP_03062905.1| integrase for prophage CP-933T [Escherichia coli B171] gi|208810345|ref|ZP_03252221.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str. EC4206] gi|208816796|ref|ZP_03257916.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str. EC4045] gi|208819521|ref|ZP_03259841.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str. EC4042] gi|209395701|ref|YP_002270994.1| integrase family protein [Escherichia coli O157:H7 str. EC4115] gi|217328885|ref|ZP_03444966.1| integrase family protein [Escherichia coli O157:H7 str. TW14588] gi|254793532|ref|YP_003078369.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str. TW14359] gi|331683415|ref|ZP_08384016.1| integrase [Escherichia coli H299] gi|12515975|gb|AAG56898.1|AE005412_8 integrase for prophage CP-933T [Escherichia coli O157:H7 str. EDL933] gi|13362085|dbj|BAB36040.1| putative integrase [Escherichia coli O157:H7 str. Sakai] gi|187768066|gb|EDU31910.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str. EC4196] gi|188017419|gb|EDU55541.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str. EC4113] gi|189367364|gb|EDU85780.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str. EC4501] gi|189375751|gb|EDU94167.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str. EC508] gi|194411527|gb|EDX27865.1| integrase for prophage CP-933T [Escherichia coli B171] gi|195182940|dbj|BAG66506.1| putative integrase [Escherichia coli O111:H-] gi|208724861|gb|EDZ74568.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str. EC4206] gi|208731139|gb|EDZ79828.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str. EC4045] gi|208739644|gb|EDZ87326.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str. EC4042] gi|209157101|gb|ACI34534.1| integrase family protein [Escherichia coli O157:H7 str. EC4115] gi|217318232|gb|EEC26659.1| integrase family protein [Escherichia coli O157:H7 str. TW14588] gi|254592932|gb|ACT72293.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str. TW14359] gi|309702157|emb|CBJ01472.1| phage integrase [Escherichia coli ETEC H10407] gi|323180706|gb|EFZ66251.1| integrase [Escherichia coli 1180] gi|326342290|gb|EGD66071.1| Integrase [Escherichia coli O157:H7 str. 1044] gi|326343839|gb|EGD67601.1| Integrase [Escherichia coli O157:H7 str. 1125] gi|331079630|gb|EGI50827.1| integrase [Escherichia coli H299] Length = 333 Score = 102 bits (255), Expect = 7e-20, Method: Composition-based stats. Identities = 47/329 (14%), Positives = 94/329 (28%), Gaps = 32/329 (9%) Query: 14 ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + GK + Y G+RIR + +Y L S E+ + + L Sbjct: 4 RKIPSGKWLCECYPYGASGKRIR-KQFATKSEALSYERRLMNSRVGDEFQDGSGPR---L 59 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----- 126 LI+ + + +L+ + + I + GD + + E R Sbjct: 60 SELIARWFEMYG-KTLSSG--AERKVKLEAICSRLGDPFASQFDKNMFATYRERRLSGEW 116 Query: 127 ------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 K + ++ + + + +F R + L+ R R+ E + D Sbjct: 117 NPKGKKKLSEATVNREQSYLHAVFAELKRLGEWSGENPLTGIRKFREEEKELAFLYVDEI 176 Query: 181 QFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237 + + S+ + + L +G R S++ + + K TV + Sbjct: 177 ERLLIACDESRNKDLGVVVRIGLATGARWSEAEGLKQSQVLPGRITFVKTKGKKNRTVPI 236 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATIS 297 +L + F K + + H +R A+ Sbjct: 237 SPQLQAMLPKKRGALFSPC---------YEAFDAAIKRAKIELPDGQLTHVLRHTFASHF 287 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGA 326 G L G + Y A Sbjct: 288 MMRGGNILVLQKILGHSDIKMTMRYAHFA 316 >gi|150016835|ref|YP_001309089.1| phage integrase family protein [Clostridium beijerinckii NCIMB 8052] gi|149903300|gb|ABR34133.1| phage integrase family protein [Clostridium beijerinckii NCIMB 8052] Length = 292 Score = 102 bits (255), Expect = 7e-20, Method: Composition-based stats. Identities = 30/258 (11%), Positives = 82/258 (31%), Gaps = 20/258 (7%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESRKHTP-- 130 I+ Y+ + N+ ++ + ++ + + S +++ + Sbjct: 5 INNYKNYLFESGKSENTIYAYVTDVSLYLKFLNRKKIDLYESDKSTVMSYIQNLTNQGKS 64 Query: 131 -SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT----KEDMQQFKSF 185 S + + S+R + + + + P + + K + + T + ++ + Sbjct: 65 ERSINRIVISLRNFYSYLKSETLIKEVPKIEYKSSKNNRKLPQILTIEEVDKIIRIVEKD 124 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKL 244 S+G + E + +G++ S+ V + ++ +K + + K Sbjct: 125 CSKGIRDNALLELMYATGMKVSELIGLNVDDVNLDLNFVKCTDNKHYERLIPIGRSACKA 184 Query: 245 LAMTPIGKETFFINN--------DKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294 L + + K+ K + KAG++K + + R A Sbjct: 185 LTEYLSIRYKIAQCGVSNLFVNLNGNKLTRQGIWRIVKEYSRKAGIDKDVNLNTFRHSFA 244 Query: 295 TISADAGATAHELMATYG 312 GA + G Sbjct: 245 VHLLQNGANVRAVQKLLG 262 >gi|94984539|ref|YP_603903.1| phage integrase [Deinococcus geothermalis DSM 11300] gi|94554820|gb|ABF44734.1| phage integrase [Deinococcus geothermalis DSM 11300] Length = 291 Score = 102 bits (255), Expect = 7e-20, Method: Composition-based stats. Identities = 34/269 (12%), Positives = 83/269 (30%), Gaps = 13/269 (4%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE---SRK 127 + I E+++ + + +++ + +T + + R Sbjct: 3 VADAIEEFQREHKARGSTPRTVKWYGETLRRLLTDHLSENVEALTPFTLSRALNIAGERG 62 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 P++ + ++R W E + +P + +RP + + + T E+++ Sbjct: 63 IRPATLANYDRALRGFTAWLHGVELLPRDPMKAKKRPVVRWQMKQVATPEEIRTLFELAR 122 Query: 188 EGSQPRLAFEFLL----YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 + +L GLR + + + + ++K V + + Sbjct: 123 RDKRYADRNCAILALLAGCGLRAGEVASLKLTDVDWHGSAVKVSGKTGERIVPMDRTTQR 182 Query: 244 LLAMTPIGKETFFINNDK----QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297 LL N + + A + + +AG + + H +R +AT Sbjct: 183 LLRRYVTHGRRGNHPNVFLFSGRPIKAMTLTHLLSRMSDRAGFTRRVTPHLLRHTAATTY 242 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGA 326 G L G T++ Y Sbjct: 243 LRNGGDVASLRRILGHATINTTALYLHLV 271 >gi|134288747|ref|YP_001111041.1| gp10, site-specific recombinase, phage integrase family [Burkholderia phage phiE202] gi|134131960|gb|ABO60708.1| gp10, site-specific recombinase, phage integrase family [Burkholderia phage phiE202] Length = 393 Score = 102 bits (255), Expect = 7e-20, Method: Composition-based stats. Identities = 43/324 (13%), Positives = 102/324 (31%), Gaps = 24/324 (7%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 +R ++G ++ G RIR S A A ++ + T Sbjct: 5 KRQKNG-PWWFDLSIDGSRIR-QSSGTSDRRAAEELAAKVASDYWRQKKLGERPTVTWDA 62 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK------ 127 + + K ++ + + + R I + I++ +E++ Sbjct: 63 AVVHWLKQNQHQRSLETTKQR----LRWLTDQLKGENVRNIDRERIQALIETKAAEKYRG 118 Query: 128 --HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 ++ + + ++ V+ + ++ P + + + + + T+ Q+ Sbjct: 119 SPVAGATVNRHMAALSVILHHCHAEGWIDAVP--PIRKLRENSARLTWLTRAQAQRLL-- 174 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGF 241 + R F L +GLR S+ + K G +I+V L + Sbjct: 175 EELPTHLRQMARFALATGLRESNVRLLEWAQVDRERALAWIHADQAKAGKVISVPLNEDA 234 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADA 300 + +L + + + ++ ++ +AG+ H +R A+ A Sbjct: 235 LGVLREQQGQHKRYVFVYKGAPI-GRIYNHAWQKACVRAGLSGLRFHDLRHTWASWHVQA 293 Query: 301 GATAHELMATYGWKTVDQAETYTK 324 G L GW + Y Sbjct: 294 GTPLPILQQLGGWASYQMVLRYAH 317 >gi|19549014|ref|NP_599058.1| integrase [Enterobacteria phage SfV] gi|2465477|gb|AAB72135.1| integrase [Enterobacteria phage SfV] Length = 387 Score = 102 bits (255), Expect = 7e-20, Method: Composition-based stats. Identities = 54/376 (14%), Positives = 108/376 (28%), Gaps = 61/376 (16%) Query: 17 RHGK-IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75 R G+ F +G+R + A T + Sbjct: 5 RRGEIWYASFTLPNGKRFKQSL-GTKDKRQATELHDKLKAEAWRVSKLGEIPDITFEEAC 63 Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP----- 130 + + S +S ++ R IT I S ++ + Sbjct: 64 VRWLEEKAHQK----SLDDDKSRIGFWLQHFAGMQLRDITESKIYSAIQKMTNRRHEENW 119 Query: 131 ------------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 ++ L+ ++ L + A +E+ ++ ++ P+ Sbjct: 120 RLRAEACRKKGKPVPEYTPKPASVATKATHLSFIKALLR-AAEREWKMLDKAPIIKVPQP 178 Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IF 222 K + IR + Q+ E + EF L +GLR S+ Q + Sbjct: 179 KNKRIRWLEPHEAQRLIDECPE--PLKSVVEFALATGLRRSNIINLEWQQIDMQRRVAWI 236 Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------------FS 270 + + K+ I V L D ++L + + + Sbjct: 237 NPEESKSNRAIGVALNDTACRVLKKQIGNHHRWVFVYKESCTKPDGTKAPTVREMRYDAN 296 Query: 271 IWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +KA +AG++ H +R A+ AG L GW++++ Y Sbjct: 297 TAWKAALRRAGIDDFRFHDLRHTWASWLGQAGVPLSVLQEMGGWESIEMVRRYAH----- 351 Query: 330 RLGIKNSRRISSVVDS 345 L + + +DS Sbjct: 352 -LAPNHLTEHARQIDS 366 >gi|260576688|ref|ZP_05844674.1| integrase family protein [Rhodobacter sp. SW2] gi|259021055|gb|EEW24365.1| integrase family protein [Rhodobacter sp. SW2] Length = 430 Score = 102 bits (255), Expect = 7e-20, Method: Composition-based stats. Identities = 47/361 (13%), Positives = 96/361 (26%), Gaps = 42/361 (11%) Query: 23 YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS-----PRKKPTTLKWLISE 77 Y F G RR+ + E T A A E + ++ +I Sbjct: 57 YRF-AGAQRRMAIGRWPEWTVTAARERARDLRREIDEGRDPLGERGELREAPRFSNMIDR 115 Query: 78 YRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR---------- 126 Y LA + S + G +IT + + Sbjct: 116 YLDEHVPH-LAPTNASDQRSMLSKLVAPHWGRKLVTEITPHDVAKLLNIIAKGRARPSKE 174 Query: 127 ------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 K TP A + +R +F A+ ++ A NP ++ + + E R Sbjct: 175 KPNNRARKLQGPKPTPIRANRVGEVLRKMFTLAIGWDWRADNPASGFKK-RIENERERFL 233 Query: 175 TKEDMQQFKSFWSEGSQPRLAFEF--LLYSGLRCSDSCRAGVQHLQ---NNIFSIKTQKT 229 +++++ + R A + +G R + +A + + Sbjct: 234 SQDEIGKLAEALDAAKDQRGAGIIRLCMLTGSRVGEVRQARFEQFNLELCSWSKPAASTK 293 Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA----TQFSIWFKAKATKAGVN-K 284 I + + + ++ A + Sbjct: 294 QRKIHRIPISAEVAAIVRQRGLVVPKGNPWLFPGDTPGQPVKEIRRFWINIQKDAKLPDV 353 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSRRISSVV 343 H +R A++ GA+ + G + + Y D +R G+ + Sbjct: 354 RIHDLRHTFASLLVSGGASLEMIGKLLGHSQMQTTQRYAHLMDSPLRAGVDAVASMFRPR 413 Query: 344 D 344 Sbjct: 414 P 414 >gi|239918537|ref|YP_002958095.1| site-specific recombinase, integrase family [Micrococcus luteus NCTC 2665] gi|281415254|ref|ZP_06246996.1| site-specific recombinase, integrase family protein [Micrococcus luteus NCTC 2665] gi|239839744|gb|ACS31541.1| site-specific recombinase, integrase family [Micrococcus luteus NCTC 2665] Length = 395 Score = 102 bits (255), Expect = 7e-20, Method: Composition-based stats. Identities = 34/331 (10%), Positives = 82/331 (24%), Gaps = 69/331 (20%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRK----- 127 I Y + N+ ++ G +R++ +++ V + Sbjct: 55 IERYLAYLTQIERSSNTVKAYAHDLKDWFVFLGVQGLGWREVRLENVAEFVAWLRRPPQL 114 Query: 128 --------------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 T S+ + L+++ ++ A R + + + G +P Sbjct: 115 RDGTVPVLPSVEHHCTESTVNRKLSALSAFYQHAARHGVDLGELLRAWQPAGGRGSGWKP 174 Query: 174 WTKEDMQQFKSFW--------------------------SEGSQPRLAFEFLLYSGLRCS 207 + + + + R F L +G+R Sbjct: 175 FLHHISKGKPQARRAIVLSAQSKLPRVLSAAEVQTILDACDHLRDRFLFAVLFDTGMRIG 234 Query: 208 DSCRAGVQHLQNNIFSIK--------------TQKTGTIITVELPDGFMKLLAMTP---- 249 ++ + + I ++ EL + L + Sbjct: 235 EALGLRHEDIAAAESQITVQRRVNDNGARSKSCAPRTVPVSAELVRLYADYLHLEYDDLD 294 Query: 250 --IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307 + + T K + G++ H R +AT G + Sbjct: 295 SDYVFVNLWGRPHGHPLTYTAVYDLVKRLRRRTGIDFDPHWYRHTAATRMLRDGVPIEVV 354 Query: 308 MATYGWKTV-DQAETYTK-GADRIRLGIKNS 336 G + Y A+ R ++ + Sbjct: 355 SKLLGHADITTTTAVYGHLSAEDARKALEEA 385 >gi|294789961|ref|ZP_06755178.1| xylulose-5-phosphate/fructose-6-phosphate phosphoketolase [Simonsiella muelleri ATCC 29453] gi|294482099|gb|EFG29809.1| xylulose-5-phosphate/fructose-6-phosphate phosphoketolase [Simonsiella muelleri ATCC 29453] Length = 315 Score = 102 bits (255), Expect = 7e-20, Method: Composition-based stats. Identities = 40/285 (14%), Positives = 93/285 (32%), Gaps = 16/285 (5%) Query: 51 LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGD 108 + + + +++ K S E +I + Sbjct: 1 MQLEHEIWQQQHLGVLPKHLWDEAAAKWIKEKQDK-------KSIEDDICRIRQLTALRG 53 Query: 109 FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168 + + K I V + S+ ++L +R + V + ++ + K Sbjct: 54 RYLQDLDRKTIMKVVSELPCSNSTKNRYLALIRSILNKCVNEWD-WLSKAPKLTLYKEPK 112 Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSI 224 + IR ++ Q+ + + F L +GLR ++ + + + Sbjct: 113 KRIRWLKPQEAQKLVHAFENLPYMQHMIIFSLVTGLRQNNVLNLKWEQIDLKRRIAWIYP 172 Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-N 283 K + V L +++LA+ F N+ Q + A ++ +AG+ N Sbjct: 173 DETKNSQALGVPLNQVALQVLAVRQKTTPFVFNNSKGQPVKAVSHR-IWRKGLKEAGISN 231 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 H +R A+ +G L GW++++ + Y + + Sbjct: 232 FKWHDLRHTWASWLVQSGVPLLALKEMGGWESLEMVQKYAHLSSQ 276 >gi|300863888|ref|ZP_07108808.1| Integrase family protein [Oscillatoria sp. PCC 6506] gi|300338109|emb|CBN53954.1| Integrase family protein [Oscillatoria sp. PCC 6506] Length = 288 Score = 102 bits (254), Expect = 7e-20, Method: Composition-based stats. Identities = 44/283 (15%), Positives = 88/283 (31%), Gaps = 23/283 (8%) Query: 59 EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH 118 +++ + T L++ + + ++ + Y + + +G +T Sbjct: 2 ALLSAEKTDTAT-DQLLNMWL-----HGKSKRTQSYYRLYAQRFLEFAG-KPLLLVTLAE 54 Query: 119 IRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 ++ S + + S+ + +++ L + + E + N + PK Sbjct: 55 VQGFATSLEQNNLSASTQRTIMAAVKSLLSFGTKIEILPRNVGAPLPLPKAPDTLSERLL 114 Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL---QNNIFSIKTQKTGTI 232 E + +L + L Y G R S+ C +HL N T K Sbjct: 115 SEIEVLTMIDLESNLRNKLIIKTLYYGGFRVSELCALKWKHLSIRNNKGQITVTGKGIKT 174 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ--------FSIWFKAKATKAGV-- 282 TV +P L QK + +A A A + Sbjct: 175 RTVLIPASLWVELQRLRGDSGENEPVFRSQKHSHDGQGHLQREWVHKIVQAAAKPAKITG 234 Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 S H +R A+ + + GA H + T G ++ Y Sbjct: 235 KVSPHTLRHAHASHALERGAKIHLVSETLGHSSIAITSRYLHA 277 >gi|225874533|ref|YP_002755992.1| putative tyrosine recombinase XerC [Acidobacterium capsulatum ATCC 51196] gi|225793160|gb|ACO33250.1| putative tyrosine recombinase XerC [Acidobacterium capsulatum ATCC 51196] Length = 310 Score = 102 bits (254), Expect = 7e-20, Method: Composition-based stats. Identities = 46/280 (16%), Positives = 86/280 (30%), Gaps = 31/280 (11%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSG-----DFDYRKITTKHIRSGVESRKH 128 + Y + + ++ ++ + D + + HIR+ + Sbjct: 12 VEAYLAALRNERGSSPHTLRAYTRELRDFAAYAERLLGKDVGVKAMEHTHIRAYLGELYE 71 Query: 129 TPSS---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 S A + L ++R KW R + +P V PK R T EDM + Sbjct: 72 RGLSKASAARALAAIRSWCKWLARHGELEQSPAALVATPKLPKHLPRVPTIEDMNRLVDA 131 Query: 186 WSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD 239 SE ++ RL E L G+R ++ ++ +Q +I K V + D Sbjct: 132 SSEEVAAWPARDRLILELLYGCGIRNAELVGINLEDIQWTNEAILVRGKGRKERYVPIGD 191 Query: 240 GFMKLLAMTPIGKET--------------FFINNDKQKMNATQFSIWFKAKATKAGVN-- 283 + L + + ++ K A G+ Sbjct: 192 AAAQALRAYLPERNQKLATAGKDSAALLLNARLRGQGRLTTRSVGRIVKQMALAQGLPAD 251 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 H +R T + GA + G + + + YT Sbjct: 252 VHPHTLRHAFGTHLLEEGADLRAIQELLGHERLSTTQRYT 291 >gi|295107671|emb|CBL05214.1| Site-specific recombinase XerD [Gordonibacter pamelaeae 7-10-1-b] Length = 356 Score = 102 bits (254), Expect = 7e-20, Method: Composition-based stats. Identities = 45/338 (13%), Positives = 99/338 (29%), Gaps = 39/338 (11%) Query: 18 HGKII---YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 +G YY +R + + A + + T Sbjct: 9 NGTYYVQCYYRDARGSKRHKTKRGFSTEVEAAVW-------ESQFKSLNGGAMDMTFSEF 61 Query: 75 ISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR------- 126 + Y + ++ I+ E D+++ GD + + Sbjct: 62 VEVYASEVKPR-IREHTWITKEYIISDKLVPFFGDMRMCDVRPIDVIRWQNELTEHRDAD 120 Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-GIRPWTKEDMQQFK 183 P+ + +F A R + NP V++ K ++ WTK++ +F Sbjct: 121 GKPWAPTYLRTVNNQLNAIFNHAERYYGLTDNPVRRVDKIGSKKGGEMQFWTKDEYLRFS 180 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------- 232 + AFE L ++G+RC + + ++ K+ Sbjct: 181 EAVMDKPLSFHAFELLYWTGIRCGELLALTPSDFMLDSSRLRINKSYQSLRGVDTVTDPK 240 Query: 233 -----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SA 286 T+ +P +A ++ + + + + +GV + Sbjct: 241 TPKSVRTIVMPAFLRDEMADFIEMRDDVAPDERLFAVTKHFLAHEMERGCKASGVKRIRV 300 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R ++ + G +A + G + VD Y Sbjct: 301 HDIRHSHVSLLIEMGFSALAIAERMGHEAVDITYRYAH 338 >gi|228474721|ref|ZP_04059452.1| integrase [Staphylococcus hominis SK119] gi|228271384|gb|EEK12752.1| integrase [Staphylococcus hominis SK119] Length = 378 Score = 102 bits (254), Expect = 7e-20, Method: Composition-based stats. Identities = 51/368 (13%), Positives = 115/368 (31%), Gaps = 52/368 (14%) Query: 11 VTKERTRHGKIIYYF--------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62 + K + + G Y F +R + L ++N Sbjct: 2 IKKYKKKDGSTAYMFVAYLGVDPITRKQKRTTRRGFKTEREAKIAEAKLQTEVQANGFLN 61 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRS 121 + T K + + + ++ ++ + F I+ D + IT H + Sbjct: 62 TEI---MTFKQIYELWLEQYR-NTVKESTYQQAMTTFKMMILPHFKDMAIKDITVPHCQK 117 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP----KRKTEGIRPWTKE 177 V T S + +F++A+ + + NP ++ P +K E ++ +T + Sbjct: 118 VVNEWYRTYSETKKERIYASTIFEYAISLKIITDNPFNHIKAPRKKSNQKHETMKYYTSD 177 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-----------------QNN 220 ++QQF + F L ++G+R + + + Sbjct: 178 ELQQFLELVKDNVLHHALFRTLAFTGIRRGELMALTWNDIDFTNQTLSVNKTLAEGLNHR 237 Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMTP----------------IGKETFFINNDKQKM 264 F + +I T+ + D +++L +E F +++ Sbjct: 238 QFIDTPKTRSSIRTISVDDKTLEVLKEWRTQQRVLSLKHGHNTSSKHQEIFTNVETNKRL 297 Query: 265 NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TY 322 N + K + + HG R ++ +AG + E+ G + Y Sbjct: 298 NRVYANETLNLICKKNNFKRITVHGFRHTHCSLLFEAGLSVQEVQDRLGHGDIQTTMGIY 357 Query: 323 TKGADRIR 330 ++ R Sbjct: 358 AHVTEKQR 365 >gi|166154210|ref|YP_001654328.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis 434/Bu] gi|166155085|ref|YP_001653340.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335456|ref|ZP_07223700.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis L2tet1] gi|165930198|emb|CAP03683.1| integrase/recombinase [Chlamydia trachomatis 434/Bu] gi|165931073|emb|CAP06637.1| integrase/recombinase [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 300 Score = 102 bits (254), Expect = 7e-20, Method: Composition-based stats. Identities = 33/266 (12%), Positives = 82/266 (30%), Gaps = 24/266 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMR 141 ++ S ++ ++++ +I + + K + ++ + L +++ Sbjct: 23 RGISPLSVQAYCQDVLLFLQRASIEATDRINQESVFLFVEKCHKAKESETTLARRLIALK 82 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--------SEGSQPR 193 V F + + + P + E PK + E++ S+ Sbjct: 83 VFFHFLKDVKMLDQQPFI--EHPKIWKRLPSILSTEEVNSLLDQPLNIPNLDTHIASRDA 140 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL--------- 244 +G+R S+ C + + ++ + + T + + Sbjct: 141 AILYTFYATGIRVSELCDLCIGDISDDFIRVTGKGRKTRLVPISIKAKQAIDAYLSSFRD 200 Query: 245 -LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGA 302 L +E F++ +K++ + A + S H +R AT + A Sbjct: 201 ELQKKNPSEEHVFLSIRGKKLDRSCVWKRITFYAKLVTTKRISPHSLRHAFATHLLNNHA 260 Query: 303 TAHELMATYGWKTVDQAETYTKGADR 328 + G + E YT A Sbjct: 261 DLRIIQEMLGHSRISSTEIYTHVASE 286 >gi|167037531|ref|YP_001665109.1| tyrosine recombinase XerD [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320115946|ref|YP_004186105.1| tyrosine recombinase XerD [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856365|gb|ABY94773.1| tyrosine recombinase XerD [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929037|gb|ADV79722.1| tyrosine recombinase XerD [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 290 Score = 102 bits (254), Expect = 7e-20, Method: Composition-based stats. Identities = 30/261 (11%), Positives = 83/261 (31%), Gaps = 20/261 (7%) Query: 71 LKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESRK 127 L ++ E+ L+ N+ S+ Q + + + I + + K Sbjct: 2 LNNVVGEFLDFLTKNKKLSKNTLESYNRDIKQFLNYLEEIGINYYNVKKSTILNYLYYLK 61 Query: 128 HTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 ++ + ++S++ + + ++ + +P + PK + + T E + S Sbjct: 62 KKGKSQATVSRNVSSLKAFYHYLFMKKKIEEDPTYMINTPKVEKKPPTALTVEQVDMLLS 121 Query: 185 FWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 +G + + E L +GL+ S+ ++ + + + + + + Sbjct: 122 IDFGNDEKGLRDKALIELLYATGLKVSEVISLKLEDVNLSYGYVVIRSN-KERVIPIGSH 180 Query: 241 FMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKA--GVNKSAHGVRK 291 ++ L + +K+ + K G + + +R+ Sbjct: 181 AIEALKNYIEKGRKAKNGENTLFLNLRGEKLTRQGCWKIIREYTDKINPGFPVTPNTLRQ 240 Query: 292 FSATISADAGATAHELMATYG 312 A GA + G Sbjct: 241 SFAQHMLQNGADIRAVQEMLG 261 >gi|298482697|ref|ZP_07000881.1| tyrosine type site-specific recombinase [Bacteroides sp. D22] gi|298271160|gb|EFI12737.1| tyrosine type site-specific recombinase [Bacteroides sp. D22] Length = 416 Score = 102 bits (254), Expect = 7e-20, Method: Composition-based stats. Identities = 40/309 (12%), Positives = 95/309 (30%), Gaps = 18/309 (5%) Query: 45 PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESY--FDQI 102 Y +A + E + + +++ H S + + +++ +I Sbjct: 105 KEYDNAALYADTDAEQAEQLERSRSNFIEYFDHVQRTRHAHS-SDSIIVNWRRVHELLKI 163 Query: 103 IRKSGDFDYRKITTKHIRSGVESRKHTP-----------SSAIQFLTSMRVLFKWAVRQE 151 KS + +I K + S + + P ++A + + + K A Sbjct: 164 FAKSDTILFSQIDIKLVESFRQFIMNAPQGGTKRGTISQNTAATYFSIFKAGLKQAFIDG 223 Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCR 211 Y+ I+ V+ + + T E++ + + R A F +G+R D + Sbjct: 224 YLTIDISAKVKGIQERESRREYLTVEELNRLAQTPCDPLLKRAA-LFSALTGIRHCDIQK 282 Query: 212 AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271 ++ + T + ++ + + + + Sbjct: 283 LKWSEVEMFNGGYRLNFTQQKTKGVEYMPISEQAYSLCGEQQEGELLVFAGLPDPSWINR 342 Query: 272 WFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 K AG+ + + H R AT+ G + + G V + Y K D Sbjct: 343 PVKRWVEAAGISKHITFHCFRHSYATLQLAGGTDIYTVSKMLGHTNVKTTQVYAKVVDEK 402 Query: 330 RL-GIKNSR 337 + + + Sbjct: 403 KEKATETIK 411 >gi|255972569|ref|ZP_05423155.1| predicted protein [Enterococcus faecalis T1] gi|256762723|ref|ZP_05503303.1| integrase [Enterococcus faecalis T3] gi|257422396|ref|ZP_05599386.1| predicted protein [Enterococcus faecalis X98] gi|255963587|gb|EET96063.1| predicted protein [Enterococcus faecalis T1] gi|256683974|gb|EEU23669.1| integrase [Enterococcus faecalis T3] gi|257164220|gb|EEU94180.1| predicted protein [Enterococcus faecalis X98] Length = 377 Score = 102 bits (254), Expect = 7e-20, Method: Composition-based stats. Identities = 58/370 (15%), Positives = 110/370 (29%), Gaps = 46/370 (12%) Query: 11 VTKERTRHGKIIYYFR-----KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65 + K + G Y F + R AL+ + + + Sbjct: 4 IKKYTKKDGSTAYMFNAYLGVDPVTGKSRRTTRRGFRTQKEAKLALSRLELEVDSKGFVK 63 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124 + +T K + + ++ + E F I+ + G+ K+T + V Sbjct: 64 QNYSTFKDVYELWYAQY-VNTVKPITAGHTERMFRLHILPEFGNIKINKLTKLMCQKAVN 122 Query: 125 SRKHTPSSAIQFLTSMRV-LFKWAVRQEYVAINPCLSVERPKRKT------EGIRPWTKE 177 SA L S+ + +AV Q+ + INP V PK+ + ++ Sbjct: 123 KWS-KEYSAFHLLKSITQKMLHYAVAQDIIDINPMQYVVMPKKDKTNETKKKQFLELSEL 181 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII---- 233 ++ + Q L F L ++G+R + + + + + KT T I Sbjct: 182 KDFLAEAKETLNFQDYLIFRVLAFTGIRKGELYALTWEDINISYKQLTVNKTLTRIGKEY 241 Query: 234 ------------------------TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269 V +LL K +K N + Sbjct: 242 IISTPKTKASNRTIGLDDTTVSELIVWKKHQKQELLKYGFKTKSNDKQLIFHRKNNTLHY 301 Query: 270 SIWFKAKAT-KAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGA- 326 + + + S H R A++ ++GAT ++ G V+ YT Sbjct: 302 PEHINFLLSSEMKTSLSPHSFRHTHASLLFESGATIKDVQKRLGHTNVNTTMDIYTHVTK 361 Query: 327 DRIRLGIKNS 336 R I Sbjct: 362 SSERKAIDKL 371 >gi|227888721|ref|ZP_04006526.1| bacteriophage integrase [Lactobacillus johnsonii ATCC 33200] gi|227850748|gb|EEJ60834.1| bacteriophage integrase [Lactobacillus johnsonii ATCC 33200] Length = 386 Score = 102 bits (254), Expect = 7e-20, Method: Composition-based stats. Identities = 50/381 (13%), Positives = 116/381 (30%), Gaps = 51/381 (13%) Query: 11 VTKERTRHGKIIYYFRKGHGRRIRLPYPH--ESTFIPAYMSALTGSTPKREYINSPR--- 65 +++ +T G++ Y F+ G+ +Y AL ++ I Sbjct: 7 ISEYKTPSGQVRYKFKIYVGKDEETGNSIQARKQGFKSYDDALKSYFEIKDKIAKGTYTG 66 Query: 66 --KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG 122 K K + + + + + ++ ++ F I+ G+ KI+T + Sbjct: 67 KENKKHKFKKIYEMWLANYELT-VKPTTLLNTKACFKNHILPVLGELYVEKISTFRCQKA 125 Query: 123 VESRKHT-PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE---- 177 + P + + + +AV + + NP V +PK + + Sbjct: 126 LNKWFSDLPKMYRKVYSLSSKVLDYAVNNDLIVKNPMKRVIKPKMQKDKREFTNFYSKEE 185 Query: 178 -DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-------- 228 + + + L F L Y+G+R ++ + +I+ K Sbjct: 186 LNKYLDACKQKKNPRVYLFFRLLAYTGMRKGEALALKWSDIDFENETIRINKTLSLGTHN 245 Query: 229 ---------TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN-------------- 265 + T+++ + + L + + Sbjct: 246 SLVIGTPKTKASNRTIQVDEQTIYYLQEWRKRQRKELFKVGFNALTDDQLLFSNGNNQLI 305 Query: 266 -ATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TY 322 W K A A + + HG R A++ +AG ++ G + Y Sbjct: 306 RPWLVQYWNKTIAKDARLKHITVHGFRHTHASLLFEAGTPMQDVKERLGHSDITTTMNVY 365 Query: 323 TKG--ADRIRLGIKNSRRISS 341 T +++ + K +R + Sbjct: 366 THVTKSEKKKTAEKFARFMEG 386 >gi|330999644|ref|ZP_08323353.1| site-specific recombinase, phage integrase family [Parasutterella excrementihominis YIT 11859] gi|329574150|gb|EGG55726.1| site-specific recombinase, phage integrase family [Parasutterella excrementihominis YIT 11859] Length = 358 Score = 102 bits (254), Expect = 7e-20, Method: Composition-based stats. Identities = 59/358 (16%), Positives = 115/358 (32%), Gaps = 58/358 (16%) Query: 23 YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSA 82 Y + ++ + + + L S + R TL LI EY Sbjct: 17 YRLQADGNKQRFSKTFKTRSEARRFSAELEISAEE-------RSSSITLAALIDEYISEV 69 Query: 83 HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----------KHTPSS 132 + + + K T + I + +E R +PS+ Sbjct: 70 TSQKRSKRTEEIRLRRLQR--DKLAAKTLSSFTNRTIENYIERRLSERAKNRDNYISPST 127 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ- 191 + LT + +F++A++ E +NPC VE+P+ R + ED+++ Sbjct: 128 VNRELTILSDVFQFAIKNELTDVNPCRGVEKPREPEHRERVASDEDIEKLLQASGWDGHT 187 Query: 192 --------PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGF 241 AF F +G+R + + L +N+ + + T + V L Sbjct: 188 VPKNKMQLAVAAFLFSCQTGMRAGELLKIEYSWLGDNVLHVPAEATKTLSRRDVALSARA 247 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-------------NKSAHG 288 ++L + + I N F+ +AG+ + H Sbjct: 248 REILKLVMELEYEPRIFGGLNDHNRDTL---FRKVRDRAGLGPEYDSQNRLIKEGLNFHD 304 Query: 289 VRKFSATISA----DAGA---TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 R AT +A + GA L G K + + Y + + + ++R+ Sbjct: 305 GRATFATWAASPDPETGAPRLDVLALARQTGHKDLKMLQRYYRAS-----AEEIAKRL 357 >gi|153939017|ref|YP_001391193.1| phage integrase family site specific recombinase [Clostridium botulinum F str. Langeland] gi|152934913|gb|ABS40411.1| site-specific recombinase, phage integrase family [Clostridium botulinum F str. Langeland] gi|295319232|gb|ADF99609.1| site-specific recombinase, phage integrase family [Clostridium botulinum F str. 230613] Length = 330 Score = 102 bits (254), Expect = 7e-20, Method: Composition-based stats. Identities = 44/293 (15%), Positives = 92/293 (31%), Gaps = 47/293 (16%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRKHTP 130 I E+ +L+ + +S+E + G D +K+T K IR + K+ Sbjct: 8 IDEFMIYCESKNLSKKTMMSYEQTLRLFTKYLEEEKGIGDVKKVTEKMIREYINYTKNRG 67 Query: 131 ----------------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162 ++ ++ +++V F + + Q Y+ + +++ Sbjct: 68 KYTIVGDKETLKTNTPEMRKDYGKKVSITTINNYIRNIKVFFNFLLEQSYIKKDVVKNIK 127 Query: 163 RPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218 + K + + T + + L LL +G+R + V+++ Sbjct: 128 QFKNQRKAKEFITDSQFAELLRHIDTTKFHERRDHLCIMMLLDTGMRIGECLEIKVENID 187 Query: 219 NNIF----SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA------TQ 268 N K V K L K+ + ++ Sbjct: 188 MNYRSILLPAVDTKGKRDRYVYFSQVMQKELRRWLQYKDRYVESDYLFCTTKGTPVLIRT 247 Query: 269 FSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320 F K A +AG+ + H +R A +G + + L G +V E Sbjct: 248 FERKLKDYANRAGLKDIHPHQLRNNFAKRFLMSGGSIYILSQVLGHSSVKVTE 300 >gi|325983789|ref|YP_004296190.1| integrase family protein [Nitrosomonas sp. AL212] gi|325533308|gb|ADZ28028.1| integrase family protein [Nitrosomonas sp. AL212] Length = 316 Score = 102 bits (254), Expect = 7e-20, Method: Composition-based stats. Identities = 45/270 (16%), Positives = 86/270 (31%), Gaps = 30/270 (11%) Query: 89 VNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRKHTPSS---AIQFLTSMRV 142 +R ++E+ + +G + + +T HI + + + S L+++ Sbjct: 36 KATRRAYENALKDFMNFTGIQNPEEFRVVTRAHIIAWRDDLVNRSLSSMSIRHRLSALSS 95 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK------SFWSEGSQPRLAF 196 LF++ + V NP V+RP ++ + D Q + +G + R Sbjct: 96 LFEYLCERNTVTHNPVKGVKRPAVESYEGKTPAIGDHQARELLEVPDGSSLKGKRDRAIL 155 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----TIITVELPDGFMKLLAMTPIGK 252 LLY LR + CR V+ + + K V L L+ Sbjct: 156 ATLLYHALRRDELCRLKVKDFKQERRGVPHIKISGKGGKTRYVPLHPAASGLIHDYLDAA 215 Query: 253 ETFF--------------INNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISA 298 I ++ + + + K G AH +R +AT + Sbjct: 216 GHDHEETGALFRSVSNNRIKESQKPITPDGVYKLVQKYSEKLGFKIGAHSLRATAATNAL 275 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADR 328 D A ++ G + Y R Sbjct: 276 DHQADIAKVQEWLGHANIATTRIYDHRRTR 305 >gi|295397658|ref|ZP_06807733.1| tyrosine recombinase XerC [Aerococcus viridans ATCC 11563] gi|294974121|gb|EFG49873.1| tyrosine recombinase XerC [Aerococcus viridans ATCC 11563] Length = 389 Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats. Identities = 47/371 (12%), Positives = 110/371 (29%), Gaps = 55/371 (14%) Query: 5 LRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHES---TFIPAYMSALTGSTPKREYI 61 +++ ++ K+ K +Y + G F + + K+E++ Sbjct: 1 MKISKYIDKKTN---KPMYRVKGYLGTDPITGKKIYKNMSGFAKKRDAEIAERKAKQEFL 57 Query: 62 NSPRK--KPTTLKWLISEYRKSAHWGSLAVNSRISFESY-FDQIIRKSGDFDYRKITTKH 118 + + + + ++ ++ ++ + I+ G KIT Sbjct: 58 KAGTTNTDRLKFEEVAKIWLETYEMSNIKESTFQIQRDIVLNHIVPNLGKHYVDKITPIM 117 Query: 119 IRSGVES--RKHTPSS-----AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 +S V R+ T S A + L R K + + K + Sbjct: 118 CQSLVNKFTREFTNYSNMIGLATRILEYARKTLKLIDDNPMKDVERPRKARKLKSERYEA 177 Query: 172 RPWTKEDMQQFKSF--WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229 +++E++ F + + ++G+R ++C + +I ++ Sbjct: 178 PYFSREELVYFLECAKKMNDPKAYAIIHLMSFTGIREGEACGLMWKDFDEVNNTITIERA 237 Query: 230 G-----------------TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF--- 269 + T+ + D ++L ++ QF Sbjct: 238 IIRGKNFEKKVGTTKSSASERTISIDDETAQVLRNWKSKQKEIMFMLGYNTSGKNQFMFT 297 Query: 270 ------------SIWFKAKATK---AGVNKSAHGVRKFSATISADAGATAHELMATYGWK 314 +A K G +AHG+R T+ +AG + E+ G + Sbjct: 298 NDKNEIYQPLYAYDRIQAVCKKFPEIG-KMTAHGLRHTHVTLLLEAGMSIKEVQERLGHE 356 Query: 315 TVDQA-ETYTK 324 E Y+ Sbjct: 357 NTKMVLEVYSH 367 >gi|88803782|ref|ZP_01119305.1| tyrosine type site-specific recombinase [Polaribacter irgensii 23-P] gi|88780310|gb|EAR11492.1| tyrosine type site-specific recombinase [Polaribacter irgensii 23-P] Length = 374 Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats. Identities = 34/268 (12%), Positives = 77/268 (28%), Gaps = 25/268 (9%) Query: 75 ISEYRKSAHWGSLAVNSRISF--------ESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 + +++K L+ N+ ++ + I +S Sbjct: 103 VRKFKKWLFQKRLSKNTVHTYVTVTATYIRYALLKKADLFSMKTVAAFNYDSIFVPNKSI 162 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + QF+ ++ F + + +ERP+++ + + +++ Sbjct: 163 SYQ----NQFIGGIQKFFAYKG-----YAYEEIPIERPRKEKKLPIILSGAEIKA-IFST 212 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKL 244 + + L +GLR ++ V + + K L F+K+ Sbjct: 213 ITNLKHKALLSLLYSAGLRIGEAITLEVTDIDCQRMLIYGRQAKGKKDRYTLLSPVFLKI 272 Query: 245 LAMTPIGKETFFINNDKQK---MNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 L + + + K KAG+ K + H +R AT + Sbjct: 273 LRDYYVAYRPKNSLFEGANGSTYSDASAQKVLKNALFKAGIRKKATLHSLRHSFATHLLE 332 Query: 300 AGATAHELMATYGWKTVDQAETYTKGAD 327 G + G + YT Sbjct: 333 KGTDIRYIQELLGHSSPKTTMIYTHVTQ 360 >gi|319902638|ref|YP_004162366.1| integrase family protein [Bacteroides helcogenes P 36-108] gi|319417669|gb|ADV44780.1| integrase family protein [Bacteroides helcogenes P 36-108] Length = 379 Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats. Identities = 42/276 (15%), Positives = 92/276 (33%), Gaps = 29/276 (10%) Query: 88 AVNSRISFESYFDQIIRKSGDFD-----YRKITTKHI------------RSGVESRKHTP 130 + ++ + + II +D KI +I + + Sbjct: 101 SGSTNRAKKDILQAIIHHLKRYDPQGILLEKIDKSYILGFIEYLKKAKQQHHKAEKGLHT 160 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER---PKRKTEGIRPWTKEDMQQFKSFWS 187 ++ + + +R AV +EY++ NP ++ PK T ++++ Sbjct: 161 NTQLYYFKMLRYCLNHAVSEEYISENPINKIKNEEKPKNHKREREYLTISELKRLVRTPF 220 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-----KTQKTGTIITVELPDGFM 242 + AF F + GLR D +++ + QKT I++ L + Sbjct: 221 YNKLLKQAFLFSCFCGLRHCDIAALKWKNIHYDDAHNASLSIVQQKTQEAISLPLSHEAV 280 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300 K L + ++ + ++ + A +A + + + H R AT+ Sbjct: 281 KYLPERDMAQDDDTVFAGLISLSRSNI--ILDKWAKQADIQKHITFHVARHTHATMLLTL 338 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 GA + + G + + Y K D ++ Sbjct: 339 GADLYTVSKLLGHTNIQTTQIYAKIVDESKVKAIAL 374 >gi|307578043|gb|ADN53661.1| integrase [Staphylococcus aureus] Length = 390 Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats. Identities = 48/387 (12%), Positives = 100/387 (25%), Gaps = 56/387 (14%) Query: 14 ERTRHGKIIYYF----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 R Y G+ + A A R + + Sbjct: 4 YEKRGSTWRYRISLGKDVKTGKYKYISNSGFKRKSDAKHHAEMIERQLR-TGDYIAPSTS 62 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--K 127 T K + ++ K + V+S + E I + + + I + V + Sbjct: 63 TFKQVADDWLKQY-ANDVKVSSVRAREKAIHHAIERFNNKPIQTIKKHDYQRFVNDISAQ 121 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---- 183 ++ + + S ++FK+A + + I P ++RPK+K E ++F Sbjct: 122 YSKNYVDSIIASTNMIFKYAYDMKLIRILPSEGIKRPKKKVSVEELEDTEIHKKFLEKDE 181 Query: 184 --------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF------------- 222 F L Y+G+R + + Sbjct: 182 LFQFLEVAKNHHSPQNSFEVFCXLAYTGMRAGELLALKWSDIDFENNTINITKTYYNPNN 241 Query: 223 ------------------SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264 ++ D + F + + + Sbjct: 242 NKKQYQILTPKTESSIGKIPVDPHVIKLLKNYKTDVQDTWKNELYVDNNFVFTDVNGYPL 301 Query: 265 NATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE- 320 + +W KA + S H R + +AG E+ K ++ Sbjct: 302 VIKKLQLWIKAILKNTDITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMN 361 Query: 321 TYTKGADR-IRLGIKNSRRISSVVDSD 346 Y K + + + ++ V D Sbjct: 362 IYAKITNSYKKDASQKFSKLMENVSKD 388 >gi|307701539|ref|ZP_07638556.1| site-specific recombinase, phage integrase family [Mobiluncus mulieris FB024-16] gi|307613218|gb|EFN92470.1| site-specific recombinase, phage integrase family [Mobiluncus mulieris FB024-16] Length = 397 Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats. Identities = 54/384 (14%), Positives = 105/384 (27%), Gaps = 44/384 (11%) Query: 2 TPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPK---- 57 F + E+ + G+ Y+RKG + + +++A + K Sbjct: 14 KKRKSRKGFGSIEKLKSGRYRAYWRKGSIKVLADETFPNRQLASDWLAAQQVAIAKGLID 73 Query: 58 ----REYINSPRKKPTTLKWLISEYRKSAHWG-SLAVNSRISFESYFD-QIIRKSGDFDY 111 E ++ + T K Y + + S++S F + GD Sbjct: 74 PELAEEELSPVKADVPTFKEWKETYLARREKEGGMKPKTIQSYKSCFKAHLEDTFGDMLI 133 Query: 112 RKITTKHIRSGVESRKHTPSSAIQ-FLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKT 168 IT + ++ S A + L AV + + K T Sbjct: 134 NLITNQQVKDWYNSFDGKKLGARKSTYRVFSALMNAAVDEGLIDASPVHVKGAVSKKPTT 193 Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS----- 223 + R Q + + + R+A + LR + + ++ Sbjct: 194 DNHRNIVATCDQVSRLAEAMPDEYRIAVLLAFWCSLRFGEITELRRKDVRFKGEKAVISV 253 Query: 224 ----------------------IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261 I+ I +L + K +A + Sbjct: 254 TRAVQYAAGFGYTVGPPKSEAGIRDIAVPPTIVADLKEHIAKYVASDKESLLVHSPASLV 313 Query: 262 QKMNATQFSIWFKAKATK---AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 + + + F + HG+R T++ +GAT ELM G + Sbjct: 314 KWYSNKSMNGHFAKAKRAVPDLDQRFTFHGLRHSGLTLAGQSGATLAELMHRAGHTNAET 373 Query: 319 AETYTKGADRIRLGI-KNSRRISS 341 Y I + IS+ Sbjct: 374 VMIYQHATQDRDAAIAEKMSAISN 397 >gi|156935256|ref|YP_001439172.1| hypothetical protein ESA_03107 [Cronobacter sakazakii ATCC BAA-894] gi|156533510|gb|ABU78336.1| hypothetical protein ESA_03107 [Cronobacter sakazakii ATCC BAA-894] Length = 387 Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats. Identities = 47/356 (13%), Positives = 99/356 (27%), Gaps = 54/356 (15%) Query: 17 RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76 R F G+R + A T + Sbjct: 6 RGETWYASFTLPDGKRFKQSL-GTKDKRQATELHDKLKAEAWRVSKLGETPDMTFEEACV 64 Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP------ 130 + + S +S ++ + IT I + ++ + Sbjct: 65 RWLEEKAHKK----SLDDDKSRIGFWLQHFAGMQMKDITETRIYNAIQKMTNRRHEENWK 120 Query: 131 -----------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167 ++ L+ ++ L + A +E+ ++ V+ P+ K Sbjct: 121 LREEALRKKGKPVPPYVPRPAATATKATHLSFIKALLR-AAEREWKMLDKAPIVKVPQPK 179 Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFS 223 + IR + ++ + + EF L +GLR S+ Q + Sbjct: 180 NKRIRWLEPHEAKRLIDECPD--PLKSVVEFALATGLRRSNIINLEWQQIDMQRRVAWIH 237 Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------------FSI 271 + K+ I V L D ++L + + + Sbjct: 238 PEQSKSNQAIGVALNDTACRVLKRQIGNHHKWVFVYKESCTRPDGTKAPTVRKMRYDANT 297 Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 ++A +AG+ + H +R A+ AG L GW++++ Y A Sbjct: 298 AWRAALKRAGIEDFRFHDLRHTWASWLVQAGVPISVLQEMGGWESIEMVRRYAHLA 353 >gi|326797743|ref|YP_004315562.1| integrase family protein [Sphingobacterium sp. 21] gi|326548507|gb|ADZ76892.1| integrase family protein [Sphingobacterium sp. 21] Length = 413 Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats. Identities = 34/288 (11%), Positives = 80/288 (27%), Gaps = 22/288 (7%) Query: 79 RKSAHWGSLAVNSRISFESYFDQIIRKSG------DFDYRKITTKHIRSG----VESRKH 128 ++ N+ + + + D + R I I + Sbjct: 120 MEALLGKGFKPNTLKGYNTSVAHLTSYLEKCHGETDIEIRHIDHAFITGYEFFLRSDMEC 179 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK--EDMQQFKSFW 186 + SA +++ +R + + ++ NP + + + E + + Q + Sbjct: 180 SAVSAAKYMKHLRKIINQCLAHRWITENPFVFYKTKAKPREKEFLTPDELDRIAQKEFSI 239 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD-----GF 241 + S R F F Y+GL +D + + I T T + Sbjct: 240 TRLSHVRDIFVFCCYTGLSYADVRKLQKTGIAKGIDGRLWVLTSREKTETSSNIPLLPQA 299 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS-A 298 ++++ ++ + + + K A G+ + H R AT Sbjct: 300 LEIIGRYADYPPCVAKGMVLPVLSNQKMNSYLKEIADLCGITKKLTFHMARHTFATTVTL 359 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346 + G + + Y K D ++ + Sbjct: 360 ANNVPIETVSKMLGHTNIKTTQHYAKLLDTRISSD--MEKLKEKLGFR 405 >gi|242371734|ref|ZP_04817308.1| bacteriophage integrase [Staphylococcus epidermidis M23864:W1] gi|242350520|gb|EES42121.1| bacteriophage integrase [Staphylococcus epidermidis M23864:W1] Length = 402 Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats. Identities = 49/387 (12%), Positives = 102/387 (26%), Gaps = 56/387 (14%) Query: 14 ERTRHGKIIYYF----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 R Y G+ + A A R + + Sbjct: 16 YEKRGNTWRYRISLGKDAKTGKYKYISNSGFKRKSDAKHHAEMVERQLR-TGDYIAPSTS 74 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--K 127 T K + +++ K + V+S + E I + + + I + V + Sbjct: 75 TFKQVANDWLKQY-ANEVKVSSVRAREKAIHHAIERFNNKPIQTINKHDYQRFVNDISAQ 133 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---- 183 ++ + + S ++FK+A + + I P ++RPK+K E ++F Sbjct: 134 YSKNYIDSIIASTNMIFKYAYDMKLIRIMPSEGIKRPKKKVSVEELEDTEIHKKFLEKDE 193 Query: 184 --------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF------------- 222 F L Y+G+R + + Sbjct: 194 LFQFLEIAKNHHSPQNSFEVFCTLAYTGMRAGELLALKWSDIDFENNTINITKTYYNPNN 253 Query: 223 ------------------SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264 ++ D + F + + + Sbjct: 254 NKKQYQILTPKTESSIGKIPVDPHVIKLLKNYKVDVQDTWKNELYVDNNFVFTDVNGYPL 313 Query: 265 NATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE- 320 + +W KA K + S H R + +AG E+ K ++ Sbjct: 314 VIKKLQLWIKAILKKTDITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMN 373 Query: 321 TYTKGADR-IRLGIKNSRRISSVVDSD 346 Y K + + + ++ V D Sbjct: 374 IYAKITNSYKKDASQKFSKLMENVSKD 400 >gi|148727179|ref|YP_001285625.1| putative integrase [Aeromonas phage phiO18P] gi|110349314|gb|ABG73202.1| putative integrase [Aeromonas phage phiO18P] Length = 350 Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats. Identities = 45/335 (13%), Positives = 95/335 (28%), Gaps = 36/335 (10%) Query: 12 TKERTRHGKII---YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 ++ K Y G R R + + + LT ++ Sbjct: 3 VRKTDHKTKPWLSEIYPDGRDGPRKRKRFATKGEALAWESHMLTAKPWQQTEAVVATGDE 62 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-- 126 L L++ + H +LA + + + T++ + E R Sbjct: 63 RRLSDLVAAWFG-RHGQTLADG--ERRRDKLVWLCEALDNPIATEFTSELFSAYRERRLA 119 Query: 127 ----------KHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWT 175 + TP++ + ++ +F R + NP + + K + + + Sbjct: 120 GELYVPGQRKQVTPTTINREQLYLQAVFNELARLGVWSGGNPLADLRQYKVQESELAYLS 179 Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 +++++Q E L L +G R S+ + + + K TV Sbjct: 180 QDEIEQLLDACKEQRDLWLIVMLCLSTGARWSEIEKVSRSQIGMGRITFTKTKGKRNRTV 239 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK----SAHGVRK 291 + + +L + F+ +AG+ S H +R Sbjct: 240 PVAPWLLAMLPRRTGRLFDDCYAD-------------FEKAIRRAGIKLPAGQSTHVLRH 286 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 A+ G L G + Y A Sbjct: 287 TFASHFMMNGGNILVLQRILGHTDIKMTMRYAHFA 321 >gi|32469432|ref|NP_862840.1| gp1 [Streptococcus phage SM1] gi|32441584|gb|AAP81883.1| gp1 [Streptococcus phage SM1] Length = 375 Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats. Identities = 46/373 (12%), Positives = 119/373 (31%), Gaps = 52/373 (13%) Query: 18 HGKIIYYFRKGH---GRRIRLPYPHESTFIPAY-MSALTGSTPKREYINSPRKKPTTLKW 73 +GK ++ R + ++ E A +A+ ++ I++ + + T + Sbjct: 8 NGKYKFFERYKDPYTEKLKKVSVTMEKKTPQAKNQAAILLQEKIKKKISTKQVESITFEE 67 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESRKHT--P 130 + + + S ++ +++ ++ + ++ + I ++I+S +E+ + Sbjct: 68 IYNLFYNSWS-KTVKASTKHNYTFVDATMKKEIPSNTLLANIDRRYIQSKIENIIDSKGY 126 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-------TEGIRPWTKEDMQQFK 183 +A + + ++ +F +AV+ Y+ N PK+ + + T ++++ Sbjct: 127 HTAYRVRSRLKSIFDYAVQYSYIENNEVNYTVIPKKPETLEDIEKKRNKFLTMQEIKALI 186 Query: 184 SFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT------ 234 + + L +G+R + ++++ I+ I Sbjct: 187 DALNNKPYQQKYADMVTVLALTGMRYGELTALQLKNIDFENNKIEITGNFDSINKIKTLP 246 Query: 235 -------------------VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275 + F + + F K Sbjct: 247 KTAKSIRTILVSDAVIKAIQRQVVRLTERYQPLKDDDYIFCLEVWNSPITLPSFIQIIKK 306 Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLG 332 KAG+ K S+H R + A+AG +M G E Y+ Sbjct: 307 YGAKAGIEKNLSSHIFRHSHISYLAEAGLPIKSIMDRVGHANAKMTLEIYSHTTQ----- 361 Query: 333 IKNSRRISSVVDS 345 ++ +DS Sbjct: 362 -DMEDKLVKTLDS 373 >gi|288905839|ref|YP_003431061.1| integrase [Streptococcus gallolyticus UCN34] gi|288732565|emb|CBI14137.1| putative integrase [Streptococcus gallolyticus UCN34] Length = 376 Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats. Identities = 46/373 (12%), Positives = 113/373 (30%), Gaps = 54/373 (14%) Query: 18 HGKIIYYFRKGHGRR-------IRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 +GK YY + + R+ + L T + + + + T Sbjct: 8 NGKYRYYQKYWNIRKECWLQVSVTLK---SKTRAVQAEAKRILEDKISKKNSVRLLQAET 64 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 +K L E+ + ++ + + I+ G+ +I + +++ + ++ + Sbjct: 65 VKELYEEWLVIRKM-EVKPSTLQTQMGIMNGFIKIFGNEKLTRIKSAALQTYLLAKDWSY 123 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-------EGIRPWTKEDMQQFK 183 + LF +A Y+ NP V PK K + +++ ++ + Sbjct: 124 GYRNLVKVYLSSLFDYAKTVGYLVDNPMDRVVLPKYKVTQEEIELKREHYLSRQQIRLYL 183 Query: 184 S---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN------------------NIF 222 + + + EFL +GLR ++ + + Sbjct: 184 NILDTEGKNPIFNILVEFLYLTGLRIGEAQALMWSDIDFETKILTVRHTVQRANKKSDYR 243 Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA------TQFSIWFKAK 276 + + V +KLL + F+++ + Sbjct: 244 ITTPKTIHSYRKVYFNSRVVKLLDELKCLTSVVSDKDLVFTNGRGDFFGLDAFNLYIQRY 303 Query: 277 ATKAGV------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRI 329 + ++H R ++ A+ G E+M G + YT + Sbjct: 304 FDNQKIGKPDNFKLTSHVFRHSHVSLLAELGFHVREIMERVGHSDEKTTIQIYTHVTE-- 361 Query: 330 RLGIKNSRRISSV 342 ++ + ++ SV Sbjct: 362 KMKQNSFEKLESV 374 >gi|217979222|ref|YP_002363369.1| integrase family protein [Methylocella silvestris BL2] gi|217504598|gb|ACK52007.1| integrase family protein [Methylocella silvestris BL2] Length = 428 Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats. Identities = 53/363 (14%), Positives = 101/363 (27%), Gaps = 49/363 (13%) Query: 10 FVTKERTRHGKIIYYFRKGHGRRIRLPYPHES------------TFIPAYMSALTGSTPK 57 + + RHG R + + + TF A A + + Sbjct: 36 HLGYRKGRHGGKWVMRRYLGNEKYEVETIAVADDRDDADGKDILTFNEAQAKAREIAKAR 95 Query: 58 REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117 R+ + P T+ ++ Y K A + + S + I G +T + Sbjct: 96 RQE--ASGAAPITISTVLDAYLKQAEAQH-SKSVSDSRNRIENHIRPAFGAMLASDLTQE 152 Query: 118 HIRSGVESRKHTPS---------------------------SAIQFLTSMRVLFKWAVRQ 150 I+ +++ +P SA + LT +R R Sbjct: 153 AIQKWLKALADSPRNVRGKAGTVSRALAKPKTDDEKRRRRASANRTLTILRAALNQGFRS 212 Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210 + + +P R+ + R + + + + R L++G R + C Sbjct: 213 GKITSDTVWRTIQPFREVDAPRVRYFTQDEVRRLVNAAQGEFRSLVNAALFTGCRYGELC 272 Query: 211 RAGVQHLQ------NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264 R V S + ++T E F +L A P + Sbjct: 273 RLQVGDFNPDAGTVFVGQSKSGKARHVVLTEEGQGFFRQLTAGRPTNALMLSRADGAPWG 332 Query: 265 NATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYT 323 + Q +A H +R +A+ + G + G E Y Sbjct: 333 ASHQIRPMAEACKAAKIAKAGFHILRHTAASHNVMGGVPMPVVAKNLGHADSRMTEKHYA 392 Query: 324 KGA 326 A Sbjct: 393 HLA 395 >gi|241992572|gb|ACS73635.1| IntI1 [uncultured bacterium] Length = 315 Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats. Identities = 35/302 (11%), Positives = 84/302 (27%), Gaps = 52/302 (17%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132 ++ + R+ + ++ + ++ + IR G + + + + + + S Sbjct: 16 VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRSHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 ++ L + + + + RP+ T +++ + + Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230 RL + L +G+R S+ + V+ L + +I ++ Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193 Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265 + + A + + M Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253 Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 F FK +AG+ K + H +R AT +G + G V YT Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313 Query: 324 KG 325 Sbjct: 314 HV 315 >gi|257437573|ref|ZP_05613328.1| prophage LambdaCh01, site-specific recombinase, phage integrase family [Faecalibacterium prausnitzii A2-165] gi|257199880|gb|EEU98164.1| prophage LambdaCh01, site-specific recombinase, phage integrase family [Faecalibacterium prausnitzii A2-165] gi|295109631|emb|CBL23584.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162] Length = 434 Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats. Identities = 35/382 (9%), Positives = 95/382 (24%), Gaps = 61/382 (15%) Query: 15 RTRHGKII---YYFRKGHGRRI---RLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 R G + + G++ + + + T + + ++ Sbjct: 19 TGRPGTVYDVNIKYTAPDGKKKSYAKKGFATKKEATQHEAEMKTKLQNPGQIASITSQRK 78 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVES-- 125 T+ ++++ +S +L ++ ++ + I G ++T + + Sbjct: 79 QTVASYLNDWVESYARVNLRPSTYDGYKKTIANYINPYIGGVALNQLTPAMVDKMFQQII 138 Query: 126 -RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + PS+A + V A + Y+ N K++ + + Sbjct: 139 DKGLKPSTAAGAKRVLSVALSHARKYRYIETNAAKDTLTKFGKSDKTPDPYTPEQVKALM 198 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-------------------- 224 EG+ + G+R S+ +++ + Sbjct: 199 QRVEGTVWEMPVILGGLYGMRRSEILGLRWRNVDLENNTFDVSEQLPFKVPPKTKVIEEM 258 Query: 225 ----------------KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ 268 + E + + D ++A+ Sbjct: 259 APPKSNGRTLPITELARPFFLKQFAMQEAQREQAEKDGKPYYDNDLVVAKPDGSPISASW 318 Query: 269 FSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWK------TV----- 316 S F + H +R +AT + + G ++ Sbjct: 319 VSSQFGKLLEDLDMPHIRFHDLRHTAATNMHQLTGDFYTVGEVLGHTLAGIGVSLGLSMN 378 Query: 317 --DQAETYTKG-ADRIRLGIKN 335 Y +R + + Sbjct: 379 FEAVTARYVDVRLERKKEVLDA 400 >gi|256843164|ref|ZP_05548652.1| integrase [Lactobacillus crispatus 125-2-CHN] gi|256614584|gb|EEU19785.1| integrase [Lactobacillus crispatus 125-2-CHN] Length = 270 Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats. Identities = 39/236 (16%), Positives = 85/236 (36%), Gaps = 17/236 (7%) Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 G R+ + + RK SS ++ ++S+ +++ R++ VAI+P + + Sbjct: 16 GWTKVRERDIQVYLQHLAERKLARSSQLRKMSSLHSFYRFLTRRKLVAIDPTQGITLRRG 75 Query: 167 KTEGIRPWTKEDMQQFKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222 + + + + + +++Q + FE +G+R S+ + L ++ Sbjct: 76 EKKLPQFFYQPELKQVFDSLKGNKPLTMRNLAMFELFYATGMRVSEVSNLTLNQLDLDLQ 135 Query: 223 SI-KTQKTGTIITVELPDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSI 271 +I K V D K L ++ F+NN + + Sbjct: 136 TILVHGKGNKDRYVAFDDKTKKSLIAYLENARPLLLKNDDEQHVFLNNQGTGITSRGIET 195 Query: 272 WFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 + +AG+ H +R AT + GA + G ++ + YT Sbjct: 196 VMQKTFNQAGISGKVHPHELRHSFATAMLNNGADLRSVQELLGHSSLSATQIYTHV 251 >gi|120603607|ref|YP_968007.1| phage integrase family protein [Desulfovibrio vulgaris DP4] gi|120563836|gb|ABM29580.1| phage integrase family protein [Desulfovibrio vulgaris DP4] Length = 417 Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats. Identities = 53/372 (14%), Positives = 111/372 (29%), Gaps = 47/372 (12%) Query: 4 SLRLPPFVTKERTRHG-----KIIYYFRKGHGRRI--RLPYPHESTFIPAYMSALTGSTP 56 + P +E R G ++ Y K GR I ++ PA + + Sbjct: 40 KTQYPGVYYREAQRIGGTGTERVYYALYKRDGRLIETKIGRQFSDDLTPAKAALIRAQLI 99 Query: 57 KREYINSPR-------KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI---IRKS 106 + P T+ L EY N + ++ +R Sbjct: 100 EGRRSTRKELRQAEMDNAPWTILTLWEEY------KRRKPN-LKGIITDQNRFEVHLRHL 152 Query: 107 GDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINP-CLSVE 162 + +ITT + + S ++ P + + +R + + ++ + + C E Sbjct: 153 QNMKPEEITTTLVDNLQLSLANSGKKPGTIKNVIELLRRIISFGEKKGLITPSQICAHFE 212 Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNN 220 P + T E + + + LY+G+R + +H+ + Sbjct: 213 MPILNNQKTEDLTPEQLNNLIAAIESTKHKKAGQMMLLALYTGMRRGEIFNLKWEHIDWH 272 Query: 221 IFSIKTQKTGT-------IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273 I + + L ++ ++ ++ K Sbjct: 273 RGFINIVGRDDGLGAKSGQCERIPLNDLARQLLLSVPKGQSRYVFPGKSGGRLVDIRKQA 332 Query: 274 KAKATKAGVNKSA---HGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADRI 329 A +AG+ S HG+R A++ A G + +EL K+ + Y D Sbjct: 333 DALKKEAGLPDSFRPFHGLRHVYASLLASTGKVSMYELQKLMTHKSAAMTQRYAHLRD-- 390 Query: 330 RLGIKNSRRISS 341 ++ S Sbjct: 391 ----DALKKASQ 398 >gi|31580573|gb|AAP51266.1| integrase [Staphylococcus aureus] gi|31580575|gb|AAP51267.1| integrase [Staphylococcus aureus] gi|31580577|gb|AAP51268.1| integrase [Staphylococcus aureus] Length = 378 Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats. Identities = 48/381 (12%), Positives = 111/381 (29%), Gaps = 52/381 (13%) Query: 11 VTKERTRHGKIIYYF--------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62 + K + G Y F +R + L ++N Sbjct: 2 IKKYTKKDGSTAYMFVAYLGIDPITRKQKRTTRRGFKTEREAKLAEAKLQTEVQANGFLN 61 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122 + TT K + + + + + I+ + + IT + + Sbjct: 62 NEI---TTFKQVYDLWLEQYKHTVRESTYQRVVTLFNTAILEHFNNVSIKSITIPYCQRV 118 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG----IRPWTKED 178 + +F++AV + + NP ++P++K +++++ Sbjct: 119 INKWNDKYKDMKAIRIYTSNVFEYAVNLKIITENPFKHTKQPRKKETPQEDSYVYYSRDE 178 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------ 232 +Q F SF + F L ++G R + + +I KT Sbjct: 179 LQTFLSFVEDNLVDYAIFRTLAFTGFRRGELMALTWNDINFEKKTITINKTCARGNNYKP 238 Query: 233 -----------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF------------ 269 T+ + D + +L + + T + + QF Sbjct: 239 IIQPPKTKSSYRTISVDDKTLSILKQWKVQQRTESLKFGHNALKKDQFVFTNVSTNKRLY 298 Query: 270 ----SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYT 323 + K + HG R ++ +AG T E+ G + Y Sbjct: 299 PEYCNKVLANVCKKHNFKQIKLHGFRHVHCSLLFEAGLTIQEVQDRLGHGDIKTTMDIYA 358 Query: 324 KGADRIRLGIKNSRRISSVVD 344 ++ R + + + ++ ++ Sbjct: 359 HVTEKQR--DQVAEKFANYIN 377 >gi|242279119|ref|YP_002991248.1| integrase family protein [Desulfovibrio salexigens DSM 2638] gi|242122013|gb|ACS79709.1| integrase family protein [Desulfovibrio salexigens DSM 2638] Length = 395 Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats. Identities = 43/319 (13%), Positives = 82/319 (25%), Gaps = 44/319 (13%) Query: 51 LTGSTPKREYINSPRKKPTTLKWL----ISEYRKSAHWGSLAVNSRISFESYFDQII--- 103 T K + T I EY + N++ S+ + Sbjct: 83 REAKTEKERVKRVEMQARKTFSEAGGVFIEEY---------SKNNKKSWRHDCTRFRLHL 133 Query: 104 -RKSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVA-INPC 158 G + KHI + + + LT R + +A+++ ++ NP Sbjct: 134 QPVIGQIYLDDLRLKHIEELKSVVTKKGLSKGTIKHCLTLARQICYYAIKRGWLTGDNPV 193 Query: 159 LSVERPKRKTEGIRPWT--KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216 ++ PK +R + +E + S+ LY+G+R + Q Sbjct: 194 KGIKFPKPNNRRLRYCSVEEEYDFFEMAVNMGYSECHDICLLSLYTGMRMGEIFALTRQD 253 Query: 217 LQNNIFSIKTQKTGT---------IITVELPDGFMKLLAMTPIGKETFFINNDKQKMN-- 265 + I + + + +L + + Sbjct: 254 IDLVENRIIIKGRSGADDGPKAGGSRVAYIIEKIRPMLENRLALFQGREALIFPKPNGGI 313 Query: 266 ATQFSIWFKAKATKAG---------VNKSAHGVRKFSATISADAGATAHELMATYGWKTV 316 F G + AH R A+ GA + G + Sbjct: 314 RKCIGPDFATLMKHLGWNDGVTDRRLRFCAHCFRHTFASRLIAKGAPLTVVKKMLGHSNI 373 Query: 317 DQAETYTKGADRI-RLGIK 334 YT D R + Sbjct: 374 QTTMRYTHTQDEQCRDAAQ 392 >gi|254454307|ref|ZP_05067744.1| phage integrase [Octadecabacter antarcticus 238] gi|198268713|gb|EDY92983.1| phage integrase [Octadecabacter antarcticus 238] Length = 422 Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats. Identities = 47/353 (13%), Positives = 103/353 (29%), Gaps = 41/353 (11%) Query: 24 YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE-----YINSPRKKPTTLKWLISEY 78 Y G RR+ E + A A ++ + LI+ Y Sbjct: 38 YRYAGRQRRMTFGRWPEWSVSAARTRAKELRRDIDAGGDPLANRDALREAPRITDLITRY 97 Query: 79 RKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESR----------- 126 + H LA + S + G ++++ + + Sbjct: 98 ME-VHLTHLAKLNAADQRSMMAKFIAPAWGRMLVTEVSSYDVELLLNRVAEGRARPAKAK 156 Query: 127 -----------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 K TP A + +R +F +AV+ + NP + P+ +T R + Sbjct: 157 PNNRARKLQGSKPTPVRANRVGEVVRKMFAYAVKWGWREDNPAMGFR-PRMETPRERYLS 215 Query: 176 KEDMQQFKSF--WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ---KTG 230 +E++ + + +E ++ + +G R + +A + S Sbjct: 216 QEEIARLATALDRAEDTRAANIIRICMLTGARVGEVRQARFEDFNLEHLSWTKPATTTKQ 275 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA----TQFSIWFKAKATKAGV-NKS 285 + ++ + ++K +AG+ + Sbjct: 276 RRVHRVPISDDAAVIVRQRRQAVYPGCPWLFPSDTPGHPVQEVRRFWKRIQREAGIEDVR 335 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSR 337 H +R A++ GA+ + G + + Y D +R G+ Sbjct: 336 IHDLRHTFASLLVSGGASLEMIGKLLGHSQMQTTQRYAHLMDSPLRAGVDAVA 388 >gi|154250813|ref|YP_001411637.1| integrase family protein [Parvibaculum lavamentivorans DS-1] gi|154154763|gb|ABS61980.1| integrase family protein [Parvibaculum lavamentivorans DS-1] Length = 389 Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats. Identities = 46/360 (12%), Positives = 104/360 (28%), Gaps = 31/360 (8%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 LP F + K + +R + + A +A + + Sbjct: 26 LPGFGVRVSQGGVKSFVVVHGRNRKRTTIGRYPTISLQDARKAAKQILAER--TLGKHEA 83 Query: 67 KPTTLKWLISEYRKSAHWGSL-AVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVE 124 P + + + + + +R + + I + I ++ Sbjct: 84 PPIDFEAGLKLFLAAHFPENYPKPRTRAETKRQLEKHFLPSLRHEKLEHIQAREISRIID 143 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK- 183 TP A +R+ F WA R+ YV +PC ++ PK+ R T+++++ Sbjct: 144 KMHKTPGEARHAFAVIRLFFNWAFRRGYVDRSPCERLQAPKQSLPRDRVLTQDEIRTVLG 203 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK---TQKTGTIITVELPDG 240 + + LL +G R + + + +I T Sbjct: 204 HARERDTTFNSIVQLLLLTGQRRGEIASLQADWIDFDSRTITLPATVTKNKRQHAFPFGE 263 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA-----------------TKAGVN 283 +++ + + ++ +A + ++ ++ Sbjct: 264 MAEVILKRALLQAQQSREERREYEDADEKALLLFPARGKHTAFDGWSKGKPNFDKGCPID 323 Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQ---AETYTKGA--DRIRLGIKNSR 337 + H +R+ AT A G H + Y + A D +R I+ Sbjct: 324 HWTLHDLRRTCATNLAALGVPVHVTEKLLNHISGTTSGIVAVYQRHAYMDEMRDAIERWE 383 >gi|54294005|ref|YP_126420.1| hypothetical protein lpl1066 [Legionella pneumophila str. Lens] gi|53753837|emb|CAH15303.1| hypothetical protein lpl1066 [Legionella pneumophila str. Lens] gi|307609834|emb|CBW99352.1| hypothetical protein LPW_11301 [Legionella pneumophila 130b] Length = 414 Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats. Identities = 51/347 (14%), Positives = 111/347 (31%), Gaps = 30/347 (8%) Query: 21 IIYYFRKGHGR-RIRLPYPHESTFIPAYMS-------ALTGSTPKREYINSPRKKPTTLK 72 IY ++ G +I L + + A +G PK+ KK T+ Sbjct: 39 WIYRYKIGKKTDKITLGHYPSMSLADARKKFIELSELRRSGQAPKKIIQIQNEKKNNTMD 98 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTP 130 LI+ + + + + II G + KI I + +++ ++ P Sbjct: 99 QLINSWYQGYVIKNRK-KPLQIKQQIEADIIPLLGHLELEKIKPIDITNALDAIVKRGAP 157 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE--------RPKRKTEGIRPWTKEDMQQF 182 A + L+S++ +F +A+ + + NP +++ +P + + Sbjct: 158 IHANRVLSSLKQVFNYAISRGSLETNPAANIKARNIGGIEKPSERFLALDEIKTLWQFLN 217 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242 Q + A + +L +G+R ++ A H T + + Sbjct: 218 SDQSKMSLQTKSAIKIILLTGVRTAEIRLAQWSHFDFANSLWTIPSELTKGGITVKIHLS 277 Query: 243 KL-------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSA 294 +L L + ++ + + G+ SAH +R+ A Sbjct: 278 ELTKSVIFKLNEGSDSPFVLSGLVPNKPLDENALPRAIRRIQKRVGIPEWSAHDLRRTFA 337 Query: 295 TISAD-AGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIKNSRR 338 T + + G K TY K + + ++ + Sbjct: 338 TQLGETLHIDPVVIEKCLGHKMPRIMATYNKNEMLPQRKEALERWSK 384 >gi|256850237|ref|ZP_05555666.1| integrase-recombinase [Lactobacillus crispatus MV-1A-US] gi|262046371|ref|ZP_06019333.1| integrase [Lactobacillus crispatus MV-3A-US] gi|256712874|gb|EEU27866.1| integrase-recombinase [Lactobacillus crispatus MV-1A-US] gi|260573242|gb|EEX29800.1| integrase [Lactobacillus crispatus MV-3A-US] Length = 270 Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats. Identities = 39/236 (16%), Positives = 85/236 (36%), Gaps = 17/236 (7%) Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 G R+ + + RK SS ++ ++S+ +++ R++ VAI+P + + Sbjct: 16 GWTKVRERDIQVYLQHLAERKLARSSQLRKMSSLHSFYRFLTRRKLVAIDPTKGITLRRG 75 Query: 167 KTEGIRPWTKEDMQQFKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222 + + + + + +++Q + FE +G+R S+ + L ++ Sbjct: 76 EKKLPQFFYQPELKQVFDSLKGNKPLTMRNLAMFELFYATGMRVSEVSNLTLNQLDLDLQ 135 Query: 223 SI-KTQKTGTIITVELPDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSI 271 +I K V D K L ++ F+NN + + Sbjct: 136 TILVHGKGNKDRYVAFDDKTKKSLIAYLENARPLLLKNDDEQHVFLNNQGTGITSRGIET 195 Query: 272 WFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 + +AG+ H +R AT + GA + G ++ + YT Sbjct: 196 VMQKTFNQAGISGKVHPHELRHSFATAMLNNGADLRSVQELLGHSSLSATQIYTHV 251 >gi|227553215|ref|ZP_03983264.1| phage integrase family site specific recombinase [Enterococcus faecalis HH22] gi|227177581|gb|EEI58553.1| phage integrase family site specific recombinase [Enterococcus faecalis HH22] Length = 408 Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats. Identities = 51/398 (12%), Positives = 111/398 (27%), Gaps = 72/398 (18%) Query: 11 VTKERTRHGKIIYYFRKGHGR--------RIRLPYPHESTFIPAYMSALTGSTPKREYIN 62 + + ++G+ + + +GR +I + G E++ Sbjct: 4 IKSYKLKNGQERWEYFVSNGRNNGTGRQQKIHKRGFRTHKEALKAAKIIEGQIASEEFVK 63 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRS 121 + T+ ++ + + ++ SRI + I G++ K + Sbjct: 64 -ENSQKMTISKFMNIWINAYK-NNVKEGSRIVYRDAIRMYIDPYIGNYQLNKYKPADHQK 121 Query: 122 GVESR-----------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP------ 164 + S + ++ ++ FK A + YV NP VE P Sbjct: 122 FINSLFTNKELGKNKNGLSYNTVKIVNAALSNAFKKAQKLGYVKSNPTYLVEFPLDKVKE 181 Query: 165 ---KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221 K K +E++ + + + F + GLR + + Sbjct: 182 KTNKEKKLEFYTLEQENLFLDTARNFDDFMWYVFFLIIFDLGLRKGEVMALRWFNFDFRD 241 Query: 222 FSIKTQKTGTIITVELPDGFMK----------------------------------LLAM 247 + K + + +L M Sbjct: 242 NILTFDKQRLYRKEQPGQVILDDVKTDAGKRSLKMTNRVRNSVLELYSINYDLTSNVLPM 301 Query: 248 TPIGKETFFINNDKQ----KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGA 302 T ++ FIN+ + + + KA + K H R +A AG Sbjct: 302 TNSNQDFLFINHRGKNVGLPIRQRSVDTAWHRIIQKANLPKIRIHDGRHTNAARLRQAGV 361 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 ++ G K V E Y + ++ + ++ Sbjct: 362 PLEDIKDMLGHKNVKTTEIYAHVSPEVK--ERAVNKLE 397 >gi|154505016|ref|ZP_02041754.1| hypothetical protein RUMGNA_02526 [Ruminococcus gnavus ATCC 29149] gi|153794686|gb|EDN77106.1| hypothetical protein RUMGNA_02526 [Ruminococcus gnavus ATCC 29149] Length = 288 Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats. Identities = 31/275 (11%), Positives = 87/275 (31%), Gaps = 18/275 (6%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--- 128 + + + ++ +L S +++Y ++ + + +++T + +R + ++K Sbjct: 8 EKYLEQLEEAGKIRNLKDRSISCYKNYVSYFLKYQ-NKNPKELTCQDVRVFLLAKKEEGL 66 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 ++ + +++R ++ + I + + Sbjct: 67 KATTLNLYNSAIRFFYR-----NVLHILWDDITVPRMILEHKLPTVLTASEIDRLLDAVD 121 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDGFMKLLA 246 + + F + SG+R S+ + +++ K L + +L Sbjct: 122 DIKYKAMFAVMYSSGMRVSEVIHLHYDDISRSKMQINVRDTKNRMDRYTILSKRCLDILT 181 Query: 247 MTPIGKETFFINNDKQKMNATQFS-----IWFKAKATKAGVNK--SAHGVRKFSATISAD 299 K K + + + K + H +R AT + Sbjct: 182 QYWFEKGRPRGILFPNKFTGNYLTVSTLEQVMRRAVADTELPKAATPHCLRHSFATHLME 241 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334 G H + A G + E Y +++ +GI+ Sbjct: 242 QGIERHNIQALLGHRDPKSTEVYLHVSNKSLMGIQ 276 >gi|317057150|ref|YP_004105617.1| integrase family protein [Ruminococcus albus 7] gi|315449419|gb|ADU22983.1| integrase family protein [Ruminococcus albus 7] Length = 378 Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats. Identities = 46/367 (12%), Positives = 98/367 (26%), Gaps = 47/367 (12%) Query: 15 RTRHGKIIYYFRKG---HGRRIRLPYPHES------TFIPAYMSALTGSTPKREYINSPR 65 R G +G+++ + S Sbjct: 5 TKRGNTFRIRVFVGCDMNGKQLVKSTTFTPPVGVTEKKAEKLAQEYAFEFERHCKGYSLL 64 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124 + L Y + L ++ ++ + I G+ + I + ++ Sbjct: 65 NENMRFSELADWYFTNYAPQELKESTVYTYWGQYKNHIEPVLGNIKVKDINAPRLTQIMQ 124 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 S P++ + ++ +F+ Q ++ PC +V PKRK +ED + Sbjct: 125 SYDLNPATVKKLYVIVQSIFRRGAEQGFIRDTPCRNVVLPKRKKSRKNKALEEDKLKRFM 184 Query: 185 FWSEGSQP----RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII------- 233 + E + + LLY+G+R + + + +I T T I Sbjct: 185 AYLESKPWDEDFKRIIKVLLYTGMRSGECLGLAWEDIDFENNTISINHTLTDIGGKHELT 244 Query: 234 -----------------------TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS 270 + + L E F++ + Sbjct: 245 DPKTESSIRIIGMGQELKKVLLAQKDYIEKLKLALGDDFAHPEMVFVSARGNYRDRNSVY 304 Query: 271 IWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADR 328 K + + H +R +AT+ ++G + G V+ Y R Sbjct: 305 QSLKRFTKGTEFEDMTLHQLRHCNATMLLNSGIDLKVVSEHLGHCDVNVTADIYADVL-R 363 Query: 329 IRLGIKN 335 Sbjct: 364 KTKARTA 370 >gi|291526261|emb|CBK91848.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629] Length = 376 Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats. Identities = 40/368 (10%), Positives = 91/368 (24%), Gaps = 71/368 (19%) Query: 33 IRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSR 92 ++ + + T K + TT+ L + + L N+ Sbjct: 1 MKRRFVYARTLDDLREKEKRIQKDK-CDGIKTEARYTTIDELFDLW--ANMKRGLKNNTF 57 Query: 93 ISFESYFDQI-IRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWA 147 +++ ++ G + I+ + R PS+ T + + + A Sbjct: 58 ENYKYMYNTFVRPVIGSKRISTLKKSDIKKYYNYLVDERNLKPSTIDNIHTVLHQVLQIA 117 Query: 148 VRQEYVAINPCLS-----VERPKRKTEGIRPWTKEDMQ---QFKSFWSEGSQPRLAFEFL 199 V +++ NP + + ++E R TK + + F F + Sbjct: 118 VDDDFIRNNPSDNVLRELKKAHCFQSEKRRALTKPEQELFLNFLKTHPAYEHWYPVFAVM 177 Query: 200 LYSGLRCSDSCRAGVQHLQ-------------------------NNIFSIKTQKTGTIIT 234 + +GLR + + T+ ++ Sbjct: 178 IGTGLRVGEVTGLRWCDIDMESGMIDVNHTLVYYDHRTEGSKSGCYFNVNTTKTPASMRQ 237 Query: 235 VELPDGFMKLLAMTPI---------------GKETFFINNDKQKMNATQFSIWFKAKATK 279 V + + + FIN Q + + + Sbjct: 238 VPMLGFVREAFEQEKQKQEDLGLHCEVTIDGYTDFIFINRFGQAQHQATLNKAIRRIIRD 297 Query: 280 AG--------------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 + S H +R T +AG + G + Y Sbjct: 298 CNDEQFLHSDEPDVLLPHFSCHSLRHTFTTRMCEAGVNIKVIQDALGHSDISTTLNIYAD 357 Query: 325 GADRIRLG 332 ++ Sbjct: 358 VTKEMKAA 365 >gi|229496998|ref|ZP_04390703.1| integrase [Porphyromonas endodontalis ATCC 35406] gi|229316100|gb|EEN82028.1| integrase [Porphyromonas endodontalis ATCC 35406] Length = 384 Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats. Identities = 35/310 (11%), Positives = 91/310 (29%), Gaps = 23/310 (7%) Query: 54 STPKREYINSPRKKPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKS---- 106 + ++ TL L ++ S++ + + + Sbjct: 68 LERIKAEFLGKKEDIDTLSQLFDKHNADIAQQVGISVSAATLQKYNVCRRHFLEFLQNDY 127 Query: 107 --GDFDYRKITTKHIRSGVESRKHT----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 D ++T IR + ++A + + + + + + + +P L+ Sbjct: 128 RRADIKLSELTYTVIREFDIYLRTAVGQNANTATKTMKTFKTIVILGQKMGVLHHDPFLN 187 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHL 217 + T E++ + + + R F F ++GL D ++ Sbjct: 188 HRF-HLEPVNRGFLTDEEIMKIANKDFGIQRLELVRDVFIFSCFTGLAYIDVSNLTPDNI 246 Query: 218 QNNIFSIKTQKTGTIITVELPDGFMKL--LAMTPIGKETFFINNDKQKMNATQFSIWFKA 275 +VE + + + +T+ + + + + K Sbjct: 247 VTLDDKQWIMTKRQKTSVEANVLLLDIPKRIIAKYSGKTYRDGKLFPILTNQKTNAYLKE 306 Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI--RL 331 A GV K + H R AT+S G + G + + Y + ++ Sbjct: 307 IADLCGVKKNLTFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKIEHD 366 Query: 332 GIKNSRRISS 341 + + ++ Sbjct: 367 MEQLADKLGK 376 >gi|71042133|pdb|1Z1G|A Chain A, Crystal Structure Of A Lambda Integrase Tetramer Bound To A Holliday Junction gi|71042134|pdb|1Z1G|C Chain C, Crystal Structure Of A Lambda Integrase Tetramer Bound To A Holliday Junction gi|71042141|pdb|1Z1G|B Chain B, Crystal Structure Of A Lambda Integrase Tetramer Bound To A Holliday Junction gi|71042144|pdb|1Z1G|D Chain D, Crystal Structure Of A Lambda Integrase Tetramer Bound To A Holliday Junction Length = 356 Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats. Identities = 58/331 (17%), Positives = 109/331 (32%), Gaps = 23/331 (6%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALT---GSTPKREY 60 LPP + R+ Y G+ L A + + G K Sbjct: 9 RRDLPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLT 65 Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 TL + Y K + + I++ S I R D ITTK I Sbjct: 66 ARINSDNSVTLHSWLDRYEKILASRGIKQKTLINYXSKIKAIRRGLPDAPLEDITTKEIA 125 Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + + +SA +++ F+ A+ + ++ N + K + R E Sbjct: 126 AXLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNHVAATRAAKSEVRRSRLTADEY 185 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 ++ +++ S RLA E + +G R D C + + ++ KTG I + Sbjct: 186 LKIYQAAESSPCWLRLAXELAVVTGQRVGDLCEXKWSDIVDGYLYVEQSKTGVKIAIPTA 245 Query: 239 DGFMKL---------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NK 284 L +G ET + ++ +++ S +F +G+ Sbjct: 246 LHIDALGISXKETLDKCKEILGGETIIASTRREPLSSGTVSRYFXRARKASGLSFEGDPP 305 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKT 315 + H +R SA + + G K+ Sbjct: 306 TFHELRSLSA-RLYEKQISDKFAQHLLGHKS 335 >gi|307129611|ref|YP_003881627.1| Phage integrase [Dickeya dadantii 3937] gi|306527140|gb|ADM97070.1| Phage integrase [Dickeya dadantii 3937] Length = 363 Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats. Identities = 44/339 (12%), Positives = 95/339 (28%), Gaps = 47/339 (13%) Query: 14 ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + GK + Y G+R+R A+ + + ++ + +L Sbjct: 4 RKLASGKWLCECYPFGREGKRVR-KQFATKGEALAFERFTMEESENKPWLG-EKADNRSL 61 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESY---FDQIIRKSGDFDYRKITTKHIRSGVESR-- 126 + +I + SL + + D I G+ R+++ E R Sbjct: 62 REIIDLWF------SLYGRTLADPKRMMAKLDIICTGLGNPKARELSAADFAHYRELRLA 115 Query: 127 ------------KHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRP 173 P + ++ +F + + A NP + K + + Sbjct: 116 GQMTDSSGIPLAVVKPRTVNLEQRNLSAVFGTLKKLGHWDAPNPLSGLPTFKIAQQELAF 175 Query: 174 WTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 ++++ +E + P L + L +G R S++ Q + + K Sbjct: 176 LAPNEIKRVLDACAESANPHLLLVTKICLATGARWSEAEGLSGQQVTPYRITYTRTKGKK 235 Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV----NKSAH 287 TV + + + F+ + G+ + H Sbjct: 236 NRTVPISRELYDEIPRKSGKLFSPC-------------RKAFERAINRTGIQLPDGQCTH 282 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 +R A+ G L G + Y A Sbjct: 283 VLRHTFASHFMMNGGNILVLRDILGHADIKMTMIYAHFA 321 >gi|288934630|ref|YP_003438689.1| lambda integrase [Klebsiella variicola At-22] gi|288889339|gb|ADC57657.1| lambda integrase [Klebsiella variicola At-22] Length = 361 Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats. Identities = 54/345 (15%), Positives = 101/345 (29%), Gaps = 33/345 (9%) Query: 6 RLPPFV-TKERTRHGKIIYYFRKG-HGRRIRLPYPHESTFIPAYMSA---LTGSTPKREY 60 LP + ++R R +Y +R G+ I L + + A + + Sbjct: 11 NLPRNLTYRKRDR----LYSWRNPITGQEISLGRVDRKDAVAQAIEANNYIDQNYLPSSL 66 Query: 61 INSPRKKPT-TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119 ++ + PT T + Y L N+ + I + G +TTK I Sbjct: 67 LDRLKDVPTFTFSAWLERYEVILERRELKPNTMKVRRNQLATIKEEFGRIPLASVTTKDI 126 Query: 120 RSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 +E S A + + +F+ A+ + ++ NP P K + R ++ Sbjct: 127 AEFLEGYIVCDKKSMASGLRSVLLDVFREAIVEGHIDRNPAEPTRTPTPKVKRERLLLEQ 186 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237 + S R A + L +G R D ++ I +KTG + V L Sbjct: 187 FTIIRDAASSHSDWARNACDLALVTGQRREDITLLRFSAVKEERLFITQEKTGHKLAVPL 246 Query: 238 PDGFMKL---LAMTPIGKETFFINNDKQ------------KMNATQFSIWFKAKATKAGV 282 L ++ + + F + Sbjct: 247 DLKLDAAGLMLHDVIERCREGNPSDFMVYSPVRRGGRKPGPLTPDGLTQAFADIRDSTEL 306 Query: 283 NK-----SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 S H +R A+ + G K + + Y Sbjct: 307 KFGPNPPSFHEIR-SLASRLYENERGEEFAQRLLGHKNLTMTKKY 350 >gi|21242957|ref|NP_642539.1| phage-related integrase [Xanthomonas axonopodis pv. citri str. 306] gi|21108460|gb|AAM37075.1| phage-related integrase [Xanthomonas axonopodis pv. citri str. 306] Length = 399 Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats. Identities = 52/365 (14%), Positives = 107/365 (29%), Gaps = 35/365 (9%) Query: 9 PFVTKERTRHGKI----IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE----- 59 P + T G+ Y G R+ L E T A A R+ Sbjct: 29 PGFLCKITPAGRKVFMLQYRTNAGERRKPALGQYGELTVDQARTMAQEWLAEVRKGGDPS 88 Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKH 118 + +K T++ + + +++ ++ D+ II G + + Sbjct: 89 AAKNAARKAPTMREFCHTFMEDYSKQRNKPSTQRGYQGVIDRCIIPIMGRMKVQDVKRPD 148 Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + ++ + + A + +R +F A P +D Sbjct: 149 VAALMKRLAYKQAEANRTFGVLRKMFNLAEVWGLRPDGTNPCRHVPMYPPGKETRLIVDD 208 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--- 235 E + +++ +R A + ++ + ++ Sbjct: 209 ELVRIFRHLEHLEAEGLENYVIPLAIRLQFEFAARRSEICPLEWAWVDLENRRVVWPDSK 268 Query: 236 ------ELPDGFMKLLAMTPIGKETFF----INNDKQKMNATQFSIWFKAKATKAGVNK- 284 + + +LL+ P + + N+ + M + + AGV Sbjct: 269 TGGISKPMSEEAYRLLSTAPRREGCPYVLPSPNDPTRHMTHGEHYGGWTRVLKAAGVPHV 328 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-----------IRLGI 333 HG+R + T A++G M G KTV Y D+ RL I Sbjct: 329 GTHGIRHRATTDIANSGVPTKVGMKLTGHKTVAMFMHYVHTEDKPVRDAAELVANRRLAI 388 Query: 334 KNSRR 338 + R Sbjct: 389 TGASR 393 >gi|312973894|ref|ZP_07788065.1| phage integrase family protein [Escherichia coli 1827-70] gi|310331428|gb|EFP98684.1| phage integrase family protein [Escherichia coli 1827-70] gi|323972701|gb|EGB67903.1| phage integrase [Escherichia coli TA007] Length = 375 Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats. Identities = 32/271 (11%), Positives = 77/271 (28%), Gaps = 12/271 (4%) Query: 63 SPRKKPTTLKWLI-SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121 + + + T++ I + + + + G R IT + Sbjct: 86 AVQSRRLTVEQAINDLWLPDLQLYKKSP--QSELSKLNLYVRPFWGKRQLRDITAGELEQ 143 Query: 122 GVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + PS+ + L + + AVR ++ +P V K R + ++ Sbjct: 144 YAAGLREKLRPSTVNRILAILSKICSLAVRAGWITHSPMTHVRYLKENNIRYRTLSATEI 203 Query: 180 QQFKSFWS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 +F + + + + LY+G+R + C ++ ++ + T + P Sbjct: 204 PRFINAATALQTPAADSILLALYTGMRIGEVCTLKWEYWHPDMHQLILPDTKSGHPFTCP 263 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQ-----FSIWFKAKATKAGVN-KSAHGVRKF 292 + + ++ F A ++ H +R+ Sbjct: 264 LAPPAIAVVQCQQDLMLSKTYIFPQLTDNARPLAYPRATFARICRDANIDNLRMHDLRRT 323 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYT 323 AT A ++ Y Sbjct: 324 FATRVLQATGDIAIASHLLNHHSLTATRRYA 354 >gi|256026508|ref|ZP_05440342.1| putative integrase [Fusobacterium sp. D11] gi|289764520|ref|ZP_06523898.1| conserved hypothetical protein [Fusobacterium sp. D11] gi|289716075|gb|EFD80087.1| conserved hypothetical protein [Fusobacterium sp. D11] Length = 329 Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats. Identities = 32/263 (12%), Positives = 83/263 (31%), Gaps = 14/263 (5%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS- 131 + + + H + S +++ + + +K D + ITT +R +++ + + Sbjct: 53 EYLEAFLSAKHVEGCSRKSLKYYKATIENLFKKI-DKSIKHITTNDLREYLDNYQKEGNA 111 Query: 132 ---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + F W ++Y+ +P + + K T ++ E M+ + Sbjct: 112 SKITIDNIRRIFSSFFAWLEEEDYILKSPVRRIHKVKTGTLVKETYSDEAMEIMRD-NCR 170 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAM 247 + + L +G+R + + ++ + V L Sbjct: 171 SLRDLAIIDILASTGMRVGELVKLNIEDIDFEGRECVVFGKGDKERKVYFDARTKIHLHN 230 Query: 248 TPIGKETFFIN------NDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADA 300 ++ +++ + I + K + H R+ AT + D Sbjct: 231 YLKTRDDDNSALFVSLLKPYKRLQISGVEIMLRQLGRKLNITKVHPHKFRRTLATKAIDK 290 Query: 301 GATAHELMATYGWKTVDQAETYT 323 G ++ G + +D Y Sbjct: 291 GMPIEQVQQLLGHQKIDTTLQYA 313 >gi|297565613|ref|YP_003684585.1| integrase family protein [Meiothermus silvanus DSM 9946] gi|296850062|gb|ADH63077.1| integrase family protein [Meiothermus silvanus DSM 9946] Length = 387 Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats. Identities = 51/369 (13%), Positives = 104/369 (28%), Gaps = 56/369 (15%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 + G+ Y G+R R L P TLK Sbjct: 11 YKRADGRYEYSLMI-SGKRHRGYAKTRKEAAKKLAELLVA----YGRNLLPDPDRITLKE 65 Query: 74 LISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR------ 126 + S + + ++ I GD +++ H+ Sbjct: 66 FCERWLTSVEHR-VKPTTHYGYKVALEKHAIPILGDIAVQRLQPLHLTHLYADLLKKRIH 124 Query: 127 --------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 +P++ ++ + AVR + NP V+ P+ WT E+ Sbjct: 125 PNDPKRLKTLSPTTVRLVHRTLHAALEDAVRWGLLPWNPADRVKPPQAPRYTGEVWTPEE 184 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK---------- 228 + +F ++ S+ F L +G+R + + +I ++ Sbjct: 185 VWRFL-AEAQHSRLYALFFLALMTGMRRGELLGLKWADIDWQEGAIWVRQNLTKAGSKRV 243 Query: 229 ------TGTIITVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQ 268 + V++ +++L + F + + + Sbjct: 244 VQSPKTYRSSRPVDVSSDVLEVLQQHREQQEKDRLGIGDAWTDEGWVFTTSVGTPIEPSN 303 Query: 269 FSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK-- 324 F A +A V H +R ++ A AG + G +V +TY Sbjct: 304 LRREFLAIIKRAKVKEIRFHDLRDTHVSLLALAGVDPKVVSERVGHASVAFTQQTYQHLF 363 Query: 325 GADRIRLGI 333 A R + + Sbjct: 364 RAQRKKAAL 372 >gi|212694179|ref|ZP_03302307.1| hypothetical protein BACDOR_03705 [Bacteroides dorei DSM 17855] gi|224026237|ref|ZP_03644603.1| hypothetical protein BACCOPRO_02993 [Bacteroides coprophilus DSM 18228] gi|253572729|ref|ZP_04850129.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|254882550|ref|ZP_05255260.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA] gi|317480879|ref|ZP_07939960.1| phage integrase [Bacteroides sp. 4_1_36] gi|329965174|ref|ZP_08302105.1| site-specific recombinase, phage integrase family [Bacteroides fluxus YIT 12057] gi|212663245|gb|EEB23819.1| hypothetical protein BACDOR_03705 [Bacteroides dorei DSM 17855] gi|224019473|gb|EEF77471.1| hypothetical protein BACCOPRO_02993 [Bacteroides coprophilus DSM 18228] gi|251837629|gb|EES65720.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|254835343|gb|EET15652.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA] gi|316902964|gb|EFV24837.1| phage integrase [Bacteroides sp. 4_1_36] gi|328523537|gb|EGF50634.1| site-specific recombinase, phage integrase family [Bacteroides fluxus YIT 12057] Length = 415 Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats. Identities = 35/283 (12%), Positives = 86/283 (30%), Gaps = 21/283 (7%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD---YRKITTKHIRSGVESRKHT 129 I + K + + + +++ ++ D + +I K+I + Sbjct: 131 EYIEKLIKEREETA-SESIVVNWRR-LHTLLSMFAKCDYIQFSQIDMKYIEAFRSFLIKA 188 Query: 130 P-----------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 P ++A + + + K A Y+ + + ++ + E+ Sbjct: 189 PQGGSKKGTISRNTASTYFSIFKAALKQAFVDGYLNCDIAAKAKNIMFQSARREYLSLEE 248 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVEL 237 + + R A F +G+R SD + ++ + VE Sbjct: 249 LNILAKTPCDDILKRAA-LFSALTGMRHSDIQKLKWSEVEEYNGGYRLNFTQQKTKGVEY 307 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSAT 295 + + K+ + + + S + +G+ K + H R AT Sbjct: 308 MPISPQAYKLCGERKKDGELLVFAGLPDPSWISRPLERWVKASGITKHITFHCFRHTYAT 367 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIR-LGIKNSR 337 + G + + G V + Y K D+ + + + Sbjct: 368 LQLANGTDIYTVSKMLGHTNVKTTQIYAKVIDKKKDEATEAFK 410 >gi|118477881|ref|YP_895032.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis str. Al Hakam] gi|229184697|ref|ZP_04311897.1| DNA integration/recombination/invertion protein [Bacillus cereus BGSC 6E1] gi|118417106|gb|ABK85525.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis str. Al Hakam] gi|228598801|gb|EEK56421.1| DNA integration/recombination/invertion protein [Bacillus cereus BGSC 6E1] Length = 292 Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats. Identities = 42/288 (14%), Positives = 93/288 (32%), Gaps = 37/288 (12%) Query: 90 NSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL---TSMRVLFK 145 ++ + + ++ + II G K+ HI+ ++ + L ++ Sbjct: 6 STFVGYRAFINQHIIPSIGMVALHKLNVMHIQKCYKTAIDRGIANNSVLLMHRILKSALN 65 Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205 AV+Q ++ NP E PK++ I+ WT+E++++F E S+ + + + +G+R Sbjct: 66 LAVKQNIISRNPADFAEIPKKERTSIQTWTEEEVKKFLLHSQE-SRYHIGYLLAITTGMR 124 Query: 206 CSDSCRAGVQHLQNNIFSIKTQK--------------TGTIITVELPDGFMKLLAMT--- 248 + Q + ++ + + T+ +P ++ L Sbjct: 125 MGEVLGLRWQDVDFEKHTVTINQTSGHDNKIKKTAKTNSSKRTIPVPKETIESLKKHKVL 184 Query: 249 -----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATI 296 + N + F F AGV H +R ATI Sbjct: 185 INQEKLRLGSAYQDFDLINCNEFGMIIKKANFRKNFIRAIHNAGVKEIKFHDLRHTHATI 244 Query: 297 SADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVV 343 G + G + Y+ + + + + Sbjct: 245 LLKQGVNPKIISERLGHTDISMTLSVYSHVLPN--MQEEAVKNFGKSI 290 >gi|20808517|ref|NP_623688.1| integrase [Thermoanaerobacter tengcongensis MB4] gi|34222921|sp|Q8R890|XERCL_THETN RecName: Full=Tyrosine recombinase xerC-like gi|20517139|gb|AAM25292.1| Integrase [Thermoanaerobacter tengcongensis MB4] Length = 391 Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats. Identities = 54/399 (13%), Positives = 110/399 (27%), Gaps = 70/399 (17%) Query: 1 MTPSLRLPPFVTKERTRHGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGST 55 M +V ++GK Y R +G+ IR + ++ Sbjct: 1 MAKKTN---YV-----KNGKEYYRVTVTIGRDENGKLIRKEFYGKTKKEAEAK--KEEYL 50 Query: 56 PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRK 113 + + TL L+ + S + + +E ++ I+ + Sbjct: 51 NGIRNGLNVDFQDVTLGDLMHTWLFEVVRMSRKPATFVKYEGHYRNYIKNSELYGMKISI 110 Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVER-----PK 165 I + I+ S+ ++ F +AV + Y+A NPC + P+ Sbjct: 111 IKSIQIQRYYNKLYQQGKSSKTIKALNNFLKTFFNYAVDEGYLAKNPCTGKKIVIPGTPE 170 Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225 K E ++ + +G + + F +GLR + + ++ Sbjct: 171 EKIETEIETFSDEEIKKIKEALKGHRLKALFLLAFGTGLRQGELLGLKWTDIDFEKKELR 230 Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN-------------------- 265 Q+ +T+ G K + I K I + Sbjct: 231 VQRMIKQVTIIDEKGNRKYKTIEQIPKTKNSIRTVPIPSSLIPMLKEHRNRQREEKLKAG 290 Query: 266 ----------------------ATQFSIWFKAKATKAGVNKS-AHGVRKFSATISADAGA 302 A+ +K +AGV H +R AT + G Sbjct: 291 SVYLNDVEKGYVFTTELGNTIDASNLLKTYKKILNRAGVPYRKFHAIRHTYATKLFERGV 350 Query: 303 TAHELMATYGWKTVDQAE-TYTKGA-DRIRLGIKNSRRI 339 + G + YT + ++ + Sbjct: 351 PLKTVSELLGHSNISITANIYTHVIPKQKTNAVETLNDL 389 >gi|47097559|ref|ZP_00235093.1| site-specific recombinase, phage integrase family, putative [Listeria monocytogenes str. 1/2a F6854] gi|254900896|ref|ZP_05260820.1| DNA integration/recombination/invertion protein [Listeria monocytogenes J0161] gi|47014070|gb|EAL05069.1| site-specific recombinase, phage integrase family, putative [Listeria monocytogenes str. 1/2a F6854] Length = 387 Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats. Identities = 47/347 (13%), Positives = 95/347 (27%), Gaps = 48/347 (13%) Query: 29 HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA 88 G++IR + A L+ + K + ++R + L Sbjct: 23 RGKQIRKTKNVTVKTVKALKLELSNFEAYVYSSDYTEIKDMRFIDFVEKWRLNYAKRELK 82 Query: 89 VNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTSMRVLF 144 N+ + + + II KITT + + PS+ +R LF Sbjct: 83 GNTIDKYNLFLENWIIPYFERKKISKITTMQLLDYFHEVQKKGVGPSALEGHHRVIRSLF 142 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-GSQPRLAFEFLLYSG 203 K+A + LSV++P K + + +++ ++ + LY G Sbjct: 143 KYATLWGITETDVSLSVKKPTYKVPEKNIYNRREIEVLIDRIKILQKYQQVMIKLALYCG 202 Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQ-----------------KTGTIITVELPDGFMKLLA 246 LR + + + N +I I ++ Sbjct: 203 LRRGEVIGLTTKDMNYNKNTINVYRAVIKSASEGIKLDETKNKRKRIVPAPAGLMQEIKE 262 Query: 247 MTPIGKET---------------------FFINNDKQKMNATQFSIWFKAKATKAG---- 281 + ++ F ++D + F K Sbjct: 263 LAKEKQKNKDKLGLLWKGTKDLDGKTVVLIFSHDDGTPFTPASVTRMFNRFLEKEENNDL 322 Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD 327 S H +R +A+ + G + G + TY + Sbjct: 323 TKISFHDLRHSAASFLLEQGINVKVIQNILGHSDIKVTLNTYAHITE 369 >gi|291286568|ref|YP_003503384.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809] gi|290883728|gb|ADD67428.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809] Length = 390 Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats. Identities = 44/284 (15%), Positives = 95/284 (33%), Gaps = 22/284 (7%) Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 + + S + + I++ S + ++ + I HIR+ +++ Sbjct: 84 SPQISFGTYAILWLDSQK-TVFSHATFITYTSSINNLLATFENMSICDIKPAHIRTYIKN 142 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + +P + + + + AV + + NPC SV+ P + + P + E++ ++ Sbjct: 143 SEVSPKTLKNHVGVLSSILSAAVEDDLIPKNPCTSVKLPHISSVEVDPLSLEEITMILNW 202 Query: 186 WSEGSQPRLA-FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------------I 232 LA F ++G+R + + N +I +T T Sbjct: 203 MKSHHPNMLAFFAVAFFTGMRTGEIMGLQWGDIDFNSHTITISRTITAGKLKHRTKTADS 262 Query: 233 ITVELPDGFMKLLAMTPIGKETFFIN------NDKQKMNATQFSIWFKAKATKAGVN-KS 285 TV++ + L+ N ++K G+ ++ Sbjct: 263 RTVDILTELDEYLSYHKQFTYMKSEWLFLTYENKPFNKTDNIIKTYWKPCLKALGIKYRT 322 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQ-AETYTKGADR 328 + R A + D G + L G KT+D Y D+ Sbjct: 323 LYQTRHTFACLMLDVGENINWLKKMLGHKTLDMILRRYGNRIDK 366 >gi|218886780|ref|YP_002436101.1| integrase family protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757734|gb|ACL08633.1| integrase family protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 355 Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats. Identities = 42/321 (13%), Positives = 93/321 (28%), Gaps = 19/321 (5%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFI-PAYMSALTGSTPKREYINSPRKKPTTLK 72 + RHGK + Y R++LP + A+ + +L Sbjct: 5 RKDRHGKPVIY------GRVKLPSGKHREHRCTTWREAVAWEESVKVTQPDTVTGTVSLA 58 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVE--SRKHT 129 L + Y +A + F ++ +++T I + ++ +R+ + Sbjct: 59 ALFTAYLDHVQARGMADKTYGEKRQAFRDLLADVKPSLPVQRVTYALIEAHLDGIARRIS 118 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + A + ++ + W VR + VER + + + ++ Sbjct: 119 GAQANRRRKNILAAYSWGVRAFKLPEPCPWRVERYREDK-RPKYVPTPEDFWKVHDAAKS 177 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------IITVELPDGFMK 243 R L++ R + R L ++ + + Sbjct: 178 PDERAMLFTALHTAARKEELFRMQRSDLDFANRRLRLWTRKRKGGGLEEDWIPMTQALHD 237 Query: 244 LLAMTPIGKETFFINNDKQKMNAT-QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301 L + + + + KAGV + H +R SA++ AG Sbjct: 238 CLLRHRLQMGFREHVFVSSRGTPWVSATHLMYSLCDKAGVRRFGFHAIRHLSASMLDGAG 297 Query: 302 ATAHELMATYGWKTVDQAETY 322 + A ++ Y Sbjct: 298 VPLSVIQAILRHRSALTTSRY 318 >gi|331086028|ref|ZP_08335111.1| hypothetical protein HMPREF0987_01414 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406951|gb|EGG86456.1| hypothetical protein HMPREF0987_01414 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 376 Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats. Identities = 43/348 (12%), Positives = 98/348 (28%), Gaps = 41/348 (11%) Query: 19 GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78 G F G+R + + + L + E+ + + + Sbjct: 20 GLYSARFVDRFGKRKHKRF----KKLQECRAWLADAIYVDEHSDISMPSDMLVDHWFDYW 75 Query: 79 RKSAHWGSLAVNSRISF-ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137 ++ N+ ++ E Y I G + H + Sbjct: 76 IGIKK-KTVRPNTVRNYTERYIRNIKPLIGKMSLSDVKPLHCQKIFYDMADQGYRTSTIY 134 Query: 138 TS---MRVLFKWAVRQEYVAINPCLS-VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193 + + + ++A E + NPC V+ K + + D+Q+ ++EG Sbjct: 135 QARITLYNMLEYAKENEVLRTNPCKRSVKSDMGKPSEKKVALERDVQKIFLRYAEGQSYE 194 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG------------- 240 + F+L +GLR + + + +I+ +++ Sbjct: 195 NQYRFILQTGLRTGELVGLKWEDIDFESKTIQIRRSMEYRYSVKEWRIGEPKSKSGYRTI 254 Query: 241 ----------------FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284 + ++ +E F+ + + + KA + + Sbjct: 255 PLTEEAVTILNKQKEKNKWISEISKEWEEFVFLCRKGTPVKNSTYDTALFKICDKAQIPR 314 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330 S H +R AT +AG L G + Y + + Sbjct: 315 FSMHILRHTFATRCIEAGMKPKTLQMLLGHSNIGITMNLYVHTTEEEK 362 >gi|309805934|ref|ZP_07699964.1| site-specific recombinase, phage integrase family [Lactobacillus iners LactinV 03V1-b] gi|309807630|ref|ZP_07701574.1| site-specific recombinase, phage integrase family [Lactobacillus iners LactinV 01V1-a] gi|308167673|gb|EFO69822.1| site-specific recombinase, phage integrase family [Lactobacillus iners LactinV 03V1-b] gi|308169127|gb|EFO71201.1| site-specific recombinase, phage integrase family [Lactobacillus iners LactinV 01V1-a] Length = 204 Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats. Identities = 24/156 (15%), Positives = 47/156 (30%), Gaps = 14/156 (8%) Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKLL 245 G + E +G+R S+ + + + I K V + L Sbjct: 29 PLGLRNMALLELFYATGMRVSEIANLKLDQVDFELNLILVHGKGNKDRYVAFGEEAKTAL 88 Query: 246 AM-----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKF 292 F+N++ + + K AG++ S H +R Sbjct: 89 NNYLVEARKKLLLHKTDYGYVFLNSNGNMITSRGLEYIIKNIFLNAGISASVHPHMLRHT 148 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 AT + GA + G +++ + YT + Sbjct: 149 FATQMLNNGADLRTVQELLGHESISTTQIYTHVTKQ 184 >gi|241992552|gb|ACS73620.1| IntI1 [uncultured bacterium] Length = 337 Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats. Identities = 36/303 (11%), Positives = 85/303 (28%), Gaps = 52/303 (17%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132 ++ + R+ + ++ + ++ + IR G + + + + + + S Sbjct: 16 VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 ++ L + + + + RP+ T +++ + + Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLPWLHEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230 RL + L +G+R S+ + V+ L + +I ++ Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193 Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265 + + A + + M Sbjct: 194 RARAWWLKDQAEGRSGVTLPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253 Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 F FK +AG+ K + H +R AT S +G + G V YT Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATASLRSGYDIRTVQDLLGHSDVSTTMIYT 313 Query: 324 KGA 326 Sbjct: 314 HVL 316 >gi|170024532|ref|YP_001721037.1| integrase family protein [Yersinia pseudotuberculosis YPIII] gi|169751066|gb|ACA68584.1| integrase family protein [Yersinia pseudotuberculosis YPIII] Length = 335 Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats. Identities = 49/327 (14%), Positives = 89/327 (27%), Gaps = 28/327 (8%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 + GK I R RL + +S K + + L Sbjct: 4 RKLTTGKWICECYPNGRRGERLRKQFATKG--EALSFERRMMQKDQVVEVSVSNTLKLSN 61 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR------- 126 L+S + + + +R + I + GD E R Sbjct: 62 LVSRWYEMHGQTLTSGKTRKVK---LEAICERLGDPLVTDFDKNAFAVYREQRLNGKWQT 118 Query: 127 ----KHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 ++ + + +R +F R E++ NP + + K + + ED+++ Sbjct: 119 KGRAAPKQATVNREYSYLRAVFSELKRLGEWMGDNPLDGLRQFKEGDQELAFLYPEDIKR 178 Query: 182 FKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239 E L L +G R S++ L + + K+ TV + Sbjct: 179 LLVACDESENKDLGNVVRICLATGARWSEAQGLSQSQLMPSRVTFTQTKSKRNRTVPISK 238 Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISAD 299 L + F K A + + H +R A+ Sbjct: 239 RLYDRLPKRRGSMFSSC---------YDAFKHALKRSAIELPKGQRTHVLRHTFASHFMM 289 Query: 300 AGATAHELMATYGWKTVDQAETYTKGA 326 G L G T+ Y A Sbjct: 290 GGGNILVLQQILGHSTILMTMRYAHFA 316 >gi|139438178|ref|ZP_01771731.1| Hypothetical protein COLAER_00719 [Collinsella aerofaciens ATCC 25986] gi|133776375|gb|EBA40195.1| Hypothetical protein COLAER_00719 [Collinsella aerofaciens ATCC 25986] Length = 356 Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats. Identities = 48/360 (13%), Positives = 106/360 (29%), Gaps = 44/360 (12%) Query: 14 ERTRHGKIIY---YFRKGHG-RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 + + Y Y+R G +R + S A + + Sbjct: 4 YKDDNNGTFYVQCYYRDARGSKRHKTKRGFSSEVEAAVW-------EGQFKSLNGGAMDM 56 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR-- 126 T + Y + ++ I+ E + +++ GD + + Sbjct: 57 TFSEFVEVYASEVKPR-IREHTWITKEYIINDKLVPFFGDMRMCDVRPIDVIRWQNELTE 115 Query: 127 -------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-GIRPWTKED 178 P+ + +F A R + NP V++ K ++ WTK++ Sbjct: 116 HRDAEGKSWAPTYLRTVNNQLNAIFNHAERYYGLTDNPVRRVDKIGSKKGGEMQFWTKDE 175 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------ 232 +F + AFE L ++G+RC + ++ K+ Sbjct: 176 YLRFSEAVMDKPLSFHAFELLYWTGIRCGELLALTPSDFMLESSRLRINKSYQSLHGVDT 235 Query: 233 ----------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 T+ +P +A ++ + + + + +GV Sbjct: 236 VTDPKTPKSVRTIVMPAFLRDEMADFIELRDDVAPDERLFAVTKHFLAHEMERGCKASGV 295 Query: 283 NK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA----DRIRLGIKNSR 337 + H +R ++ + G +A + G + VD Y D + + +R Sbjct: 296 KRIRVHDIRHSHVSLLIEMGFSALAIAERMGHEAVDITYRYAHLFPTKQDEMAAALDGAR 355 >gi|138557|sp|P06723|VINT_BP186 RecName: Full=Integrase gi|3337277|gb|AAC34175.1| Int [Enterobacteria phage 186] Length = 336 Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats. Identities = 50/332 (15%), Positives = 90/332 (27%), Gaps = 38/332 (11%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 + G I + R+ + T P ++ TLK Sbjct: 4 RKNPAGGWICELYPNGAKGKRIRKKFATKGEALAFEQYTVQNP----WQEEKEDRRTLKE 59 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR------- 126 L+ + SAH +L + + G+ R + E R Sbjct: 60 LVDSWY-SAHGITLKDGLKRQLAMH--HAFECMGEPLARDFDAQMFSRYREKRLKGEYAR 116 Query: 127 -----KHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + +P + L R +F R E+ NP ++ + + + T + + Sbjct: 117 SNRVKEVSPRTLNLELAYFRAVFNELNRLGEWKGENPLKNMRPFRTEEMEMTWLTHDQIS 176 Query: 181 QFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 Q + P L L +G R S++ L + K TV + Sbjct: 177 QLLGECNRHDHPDLETVVRICLATGARWSEAESLRKSQLAKYKITYTNTKGRKNRTVPIS 236 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA----HGVRKFSA 294 + L G+ F++ + G+ A H +R A Sbjct: 237 KELYESLPDDKKGRLFSDCYG------------AFRSALERTGIELPAGQLTHVLRHTFA 284 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGA 326 + G L G + Y A Sbjct: 285 SHFMMNGGNILVLQRVLGHTDIKMTMRYAHFA 316 >gi|269216406|ref|ZP_06160260.1| putative phage integrase [Slackia exigua ATCC 700122] gi|269130665|gb|EEZ61743.1| putative phage integrase [Slackia exigua ATCC 700122] Length = 353 Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats. Identities = 40/303 (13%), Positives = 78/303 (25%), Gaps = 37/303 (12%) Query: 73 WLISEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KH 128 I + + ++ + + I+R G + + + S + Sbjct: 14 DYIDFFVSMKERSGAIERSTVRDYHAVARLIVRYIGTCTVSDMEVMAVSDWMASMVRDGY 73 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-FWS 187 P + + + K+AV Q + NPC + P++ + + + Sbjct: 74 APKTCSKAFRLLSQALKFAVGQGAIDKNPCDFCKPPRQIRSRFIALDRAERSRMLYLARQ 133 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--------------- 232 + S A E L +G+R + C + + G Sbjct: 134 DDSPLGFAIEIALTTGMRRGEVCALKWSDFSSRGTLTVRRALGNAEGGFYIKEPKSLSGI 193 Query: 233 ITVELPDGFMKLLAMTP---------------IGKETFFINNDKQKMNATQFSIWFKAKA 277 T+ L + L G + Q N + F Sbjct: 194 RTIPLASDTNEALGRLKGAFLEANRSEGSASADGYIVGAGESGDQPYNPDRLGRDFAQFC 253 Query: 278 TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG-ADRIRLGIKN 335 G + +R AT AG + + G V Y + + R Sbjct: 254 RDNGFECTFRDLRHTFATFMVGAGVDVRTVASLLGHANVAMTLNIYAEADPEAKRRAAGA 313 Query: 336 SRR 338 R Sbjct: 314 IER 316 >gi|13475380|ref|NP_106944.1| integrase/recombinase [Mesorhizobium loti MAFF303099] gi|14026132|dbj|BAB52730.1| integrase/recombinase [Mesorhizobium loti MAFF303099] Length = 302 Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats. Identities = 34/287 (11%), Positives = 78/287 (27%), Gaps = 16/287 (5%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY----RKITTKHIRSGVESRKHT 129 L + + ++ ++ ++ G + + I + Sbjct: 13 LRQRLIDDMNMRRFSQETQRNYLRDIGRLATFLGRSPHTATTDDLRRFQIEQQDDGVPV- 71 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-------PWTKEDMQQF 182 + ++++R F V + +A K R T Q Sbjct: 72 -PTMNSIVSALRFFFTHTVDRPDLARKLVRLAHPRKLPVVLSRDEVARLLNATTCLKHQA 130 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242 + G+ R+A L S+ V+ + + ++ + Sbjct: 131 ALSVAYGAGLRVAEVSALKVADIDSERMLIRVERGKGGRYRNAMLSQDLLLLLRQWWKVG 190 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADA 300 + + F + + ++ Q A A + K H +R AT + Sbjct: 191 RQQGVMHRDGWLFPGQHAMKPISTRQLYRVVVEAAQAADIAKRVGPHTLRHSFATHLLED 250 Query: 301 GATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSRRISSVVDSD 346 G + G ++ YTK A R +R ++ + Sbjct: 251 GTDIRIIQVLLGHAKLNSTAFYTKVATRTVRTVTSPLDKLGLFKPEE 297 >gi|85708224|ref|ZP_01039290.1| site-specific recombinase, phage integrase family protein [Erythrobacter sp. NAP1] gi|85689758|gb|EAQ29761.1| site-specific recombinase, phage integrase family protein [Erythrobacter sp. NAP1] Length = 330 Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats. Identities = 40/275 (14%), Positives = 84/275 (30%), Gaps = 9/275 (3%) Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHI 119 R K E+ ++R + +Y ++I + G I I Sbjct: 37 TAPERLKAPLFAEYAEEFWLDYSPH-WKPSTRAASRAYIDKRLIPRFGTLCVDAIERADI 95 Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 +S + + + M V+ ++A + Y N + K + + D Sbjct: 96 NRWRDSMADVGGAFNRSIPVMSVMMQYAEKLGYREKNTNPCRGVSRFKRDLPERYLSADE 155 Query: 180 QQFK-----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234 + A L+Y+G R S+ +++Q + ++ KTG T Sbjct: 156 YRRLGKVLAEHDGANEFVVPALRMLIYTGARVSEIATLRWRYVQPSRLALPDSKTG-PKT 214 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFS 293 + L + +L + + + ++ KA + H +R Sbjct: 215 IYLNPQAIAVLDALQRRGDDQLVFPAMYREVPINLGQHWEKIRRKAALPDVRLHDLRHSF 274 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 A+++ G + G + Y AD Sbjct: 275 ASVAIAKGIPLATIGKLLGHALPETTARYAHLADE 309 >gi|327470621|gb|EGF16077.1| phage integrase family integrase/recombinase [Streptococcus sanguinis SK330] Length = 328 Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats. Identities = 33/264 (12%), Positives = 75/264 (28%), Gaps = 14/264 (5%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESRK 127 L+ + + + S ++ + + R +TT +R + RK Sbjct: 51 SKLLELFISAKRIEGCSEKSLKYYKMVIENMFVSL-KTSIRDLTTSDLRTYLARYQQERK 109 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + + F W ++Y+ +P + + K + E ++ + Sbjct: 110 SSKVTIDNMRRIFSSFFGWLEDEDYILKSPVRRIHKIKTDKTIKETLSDEGLELLRDACD 169 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLA 246 + + + L +G+R + R + + + V L Sbjct: 170 K-IRDLAMIDLLTSTGMRVGELVRLNREDINFYERECVVFGKGNSERIVYFDARTKIHLI 228 Query: 247 MTPIGKETFFINNDKQKMNAT------QFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299 ++ + + KA +NK H R+ AT + D Sbjct: 229 NYLDSRQDDNPALFVSLSSPHDRLLIGGVETRLRQLGQKADLNKVHPHKFRRTLATRAID 288 Query: 300 AGATAHELMATYGWKTVDQAETYT 323 G ++ G +D Y Sbjct: 289 KGMPIEQVQHLLGHVKIDTTMHYA 312 >gi|54297046|ref|YP_123415.1| hypothetical protein lpp1088 [Legionella pneumophila str. Paris] gi|53750831|emb|CAH12239.1| hypothetical protein lpp1088 [Legionella pneumophila str. Paris] Length = 414 Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats. Identities = 51/347 (14%), Positives = 112/347 (32%), Gaps = 30/347 (8%) Query: 21 IIYYFRKGHGR-RIRLPYPHESTFIPAYMS-------ALTGSTPKREYINSPRKKPTTLK 72 IY ++ G +I L + + A +G PK+ KK T++ Sbjct: 39 WIYRYKIGKKTDKITLGHYPSMSLADARKKFIELSELRRSGQAPKKIIQIQNEKKNNTME 98 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTP 130 LI+ + + + + II G + KI I + +++ ++ P Sbjct: 99 QLINSWYQGYVIKNRK-KPLQIKQQIEADIIPLLGHLELEKIKPIDITNALDTIVKRGAP 157 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE--------RPKRKTEGIRPWTKEDMQQF 182 A + L+S++ +F +A+ + + NP +++ +P + + Sbjct: 158 IHANRVLSSLKQVFNYAISRGNLETNPAANIKARNIGGIEKPSERFLALDEIKTLWQFLN 217 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242 Q + A + +L +G+R ++ A H T + + Sbjct: 218 SDQSKMSLQTKSAIKIILLTGVRTAEIRLAQWSHFDFANSLWTIPSELTKGGITVKIHLS 277 Query: 243 KL-------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSA 294 +L L + ++ + + G+ SAH +R+ A Sbjct: 278 ELTKSVILKLNEGSDSSFVLSGLVPNKPLDENALPRAIRRIQKRVGIPEWSAHDLRRTFA 337 Query: 295 TISAD-AGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIKNSRR 338 T + + G K TY K + + ++ + Sbjct: 338 TQLGETLHIDPVVIEKCLGHKMPRIMATYNKNEMLPQRKEALERWSK 384 >gi|255349272|ref|ZP_05381279.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis 70] gi|255503808|ref|ZP_05382198.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis 70s] Length = 300 Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats. Identities = 33/266 (12%), Positives = 82/266 (30%), Gaps = 24/266 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMR 141 ++ S ++ ++++ +I + + K + ++ + L +++ Sbjct: 23 RGISPLSVQAYCQDVLLFLQRASIEATDRINQESVFLFVEKCHKAKESETTLARRLIALK 82 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--------SEGSQPR 193 V F + + + P + E PK + E++ S+ Sbjct: 83 VFFHFLKDAKMLDQQPFI--EHPKIWKRLPSILSTEEVNSLLDQPLNIPNLDTHIASRDA 140 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL--------- 244 +G+R S+ C + + ++ + + T + + Sbjct: 141 AILYTFYATGIRVSELCDLCIGDISDDFIRVTGKGRKTRLVPISIKAKQAIDAYLSSFRD 200 Query: 245 -LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGA 302 L +E F++ +K++ + A + S H +R AT + A Sbjct: 201 ELQKKNPSEEHIFLSIRGKKLDRSCVWKRITFYAKLVTTKRISPHSLRHAFATHLLNNHA 260 Query: 303 TAHELMATYGWKTVDQAETYTKGADR 328 + G + E YT A Sbjct: 261 DLRIIQEMLGHSRISSTEIYTHVASE 286 >gi|260664724|ref|ZP_05865576.1| integrase [Lactobacillus jensenii SJ-7A-US] gi|260561789|gb|EEX27761.1| integrase [Lactobacillus jensenii SJ-7A-US] Length = 383 Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats. Identities = 44/379 (11%), Positives = 98/379 (25%), Gaps = 51/379 (13%) Query: 14 ERTRHGKIIYYFRKGHGRR------------------IRLPYPHESTFIPAYMSALTGST 55 T+ GK+ + R R+ + Y + L + Sbjct: 3 YITKRGKV-WQVRHSRRRKKIVQQPDGSYKVDYVLEQVSKSGFKTKRTAQEYAAQLELES 61 Query: 56 PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115 K I + ++ + + + + ++ G +KI Sbjct: 62 AKGYDI----TANPSFAEYFEDWYIETKKDKIRNTTLVKYIQDSKRLYDYFGFEKLKKIK 117 Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI--RP 173 + + + P S R ++A+R ++ + VE + + Sbjct: 118 RIDYQRFMNTLDLAPDSVKMINRRYRACIRYAIRDGIISRDFTDGVELKGNDKQSRATQY 177 Query: 174 WTKEDMQQFKSFWSEGSQPR----LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229 + ++++ S PR L +G R + L + +I+ K+ Sbjct: 178 LSLAEIKKLLSVAIATRNPRYTSSYMIITALLTGARYGEIAGLQWSDLDSKANTIRINKS 237 Query: 230 GTI----------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273 I V + L F K Sbjct: 238 YNQNTKTNGPTKNLQSIRTIIVSPTLVKLMLELKQNGSNFIFGSVGLKIPPATNNVGSVL 297 Query: 274 KAKATKAGVNKS---AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRI 329 + KA + K H +R + G + + G K ++ + Y D Sbjct: 298 RNLMKKAKITKKDFVFHSLRHCHVALLHSQGIDWYAISKRLGHKDLNVTLKIYAYMLDED 357 Query: 330 RLGIKNS--RRISSVVDSD 346 + ++ +V + Sbjct: 358 KRKSDTLISNKLEKIVQQN 376 >gi|167465667|ref|ZP_02330756.1| DNA integration/recombination/invertion protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 412 Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats. Identities = 50/395 (12%), Positives = 119/395 (30%), Gaps = 69/395 (17%) Query: 17 RHGKIIYYFRKG-----HGRRIRLPYP----------HESTFIPAYMSALTGSTPKREYI 61 + G+ + G R RL + L + Sbjct: 7 KRGENTWRLTIDLGYNQDGSRNRLRRKVVVEDKTLLKTKKKLREHLEDELAKFKQEVLSG 66 Query: 62 NSPRKKPTTLKWLIS-EY--RKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTK 117 + + TLK I E+ + ++ +L+ + ++ + + I+ G I T Sbjct: 67 EYIKPEKMTLKQFIENEWEPKYASKPKNLSPLTYKTYMHHIENHIMPTFGHKFLGDIKTL 126 Query: 118 HIRSGVESRKH------------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165 HI + ++ +P + ++ + A + + NP + V++PK Sbjct: 127 HIVTFIDDLGKPGSRKDNKGDTLSPGTIQFIYRVLKNILTRATEWQLIKSNPTVGVKKPK 186 Query: 166 RKTEGIRPWTKEDMQQFKSF-WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 + + + +++ ++ + E + RL + G R + + +I Sbjct: 187 VEQTQLDFYDEKEAREVIKALYQEPRRWRLLILGAMLGGCRRGELVGLEWSDVDFENKTI 246 Query: 225 KTQKTG-----------------TIITVELPDGFMKLLAMTPIGK--------------- 252 +K+ +I T+++P +M L Sbjct: 247 SIRKSISLTVDSRAIEKEPKSKSSIRTIDMPQWYMVELKEYEREWKKEKLSVGDKWIGGD 306 Query: 253 -ETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMAT 310 F + + S W+ + + + H +R SAT+ +AGA+ + Sbjct: 307 RRYVFHAGLGKPYFYSYPSEWWSKFIKRHDLKRVRFHDLRHSSATLLIEAGASMKAIQQR 366 Query: 311 YGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVVD 344 G Y ++ + + + Sbjct: 367 LGHSKHQTTADVYAHVT--KKVSRETAEKFDKFAP 399 >gi|9632962|ref|NP_049990.1| integrase [Streptococcus phage Sfi21] gi|5524043|gb|AAD44095.1|AF115103_25 orf359 gp [Streptococcus phage Sfi21] gi|2292758|emb|CAA64931.1| integrase [Streptococcus phage Sfi21] gi|2897103|gb|AAC03454.1| integrase homolog [Streptococcus phage TP-J34] Length = 359 Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats. Identities = 44/335 (13%), Positives = 103/335 (30%), Gaps = 20/335 (5%) Query: 14 ERTRHGKIIYY--FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 R R Y + G+R T A +A + N + TL Sbjct: 4 YRKRSNGWEYRINYYDSTGKRKPKTKGGFRTKSEAIKAA--AEMELKLQDNVNVDEDITL 61 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 ++ + +++ + ++ + +I GD + IT + + S T + Sbjct: 62 YDYFKQWCEVYKKPTVSKITYKAYINSQRKIELFFGDKKLKSITATEYQRVLNSYAKTHA 121 Query: 132 --SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + +F ++ + AV + Y+ N C + + ++++++ E Sbjct: 122 QDTVERFNVHVKACIEMAVHEGYIKRNFCKFAKINAKNKGRDIETKFLEVEEYERLIYET 181 Query: 190 SQP-----RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFM 242 S+ A + +G+R ++ V ++ + + KT T +P Sbjct: 182 SKHPEYASYAALYIIAKTGIRFAECLGLTVDDIKRDTGMLSVNKTWDYKNNTGFMPTKTK 241 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQF------SIWFKAKATKAGVNKSAHGVRKFSATI 296 + P+ E + + + + K G H +R A+ Sbjct: 242 SSIREIPLDDEFINFIDQLPPTDDGRILPSLSNNAVNKTLRKIVGREVRVHSLRHTYASY 301 Query: 297 SADAGATAHELMATYGWKTVD-QAETYTKGADRIR 330 + G + ++ E Y + Sbjct: 302 LIAHDIDLISVSQVLGHENLNITLEVYAHQLQEQK 336 >gi|315644272|ref|ZP_07897442.1| integrase family protein [Paenibacillus vortex V453] gi|315280647|gb|EFU43936.1| integrase family protein [Paenibacillus vortex V453] Length = 303 Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats. Identities = 38/273 (13%), Positives = 90/273 (32%), Gaps = 15/273 (5%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-TKHIRSGVESRKHT 129 + ++ E+ + +A + + + + ++ D + + + Sbjct: 15 WEDILEEFLRFKLLNGIAKTTHKDYIRTVNLLFKRFPDAWGSYYKLEEAVIDHLNQEGIA 74 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI---RPWTKEDMQQFKSFW 186 P++ LT +R FKW V + ++ NP +++ K + + +E ++ Sbjct: 75 PATFNSRLTYLRTFFKWCVEEGHLKKNPLTKIKKRKEGSRIVAISIETLQELIRVPDQST 134 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK----TGTIITVELPDGFM 242 G + F L +G+R S++ ++ T T+ + + Sbjct: 135 FVGMRDYTLIIFTLDTGIRPSEALALQPNDFNLISGWVRIPDGAAKTRVSRTLNISPVTV 194 Query: 243 KLLAMTPIGKETFFINNDKQKMN-------ATQFSIWFKAKATKAGVNKSAHGVRKFSAT 295 L + + N + + + + GV+ + + +R A Sbjct: 195 DALKRLIDMRPRSWANKVPVFSTETGNVLNRHTWGDRLERHSKQVGVHITPYALRHAFAL 254 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADR 328 GA+A L T G + + Y AD Sbjct: 255 EFLRNGASAFSLQKTLGHVDISMTKRYVALADE 287 >gi|303327829|ref|ZP_07358269.1| prophage DLP12 integrase [Desulfovibrio sp. 3_1_syn3] gi|302862190|gb|EFL85124.1| prophage DLP12 integrase [Desulfovibrio sp. 3_1_syn3] Length = 320 Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats. Identities = 36/288 (12%), Positives = 86/288 (29%), Gaps = 13/288 (4%) Query: 59 EYINSPRKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117 + R L ++ Y + R+ ++ G +I Sbjct: 19 RRRDGARAAILRLDAFVAAVYLPHVRLRKRS--WRVDERIARQRLSPAFGARRLDRIRRG 76 Query: 118 HIRSGVESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 + + P++ + L + + A+ + + P K R Sbjct: 77 EVEDWLRDLAEEGLCPATCNRILAVFKSVCSLAMLHGVLPAGQSPCADVPPFKIHLQRER 136 Query: 175 TKEDMQQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKT 229 + + R A LL +G R S+ +A ++++ ++ ++ K+ Sbjct: 137 YLAPDEAQRLMRELERSARPEAAAIRLLLLTGARKSEILKARWENVRLDLRLLTVPLSKS 196 Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA-TQFSIWFKAKATKAGV-NKSAH 287 G + L D + ++ P G ++ + +++ G+ + H Sbjct: 197 GKPRHLPLSDAAVAVIRALPRGPGCPWLFPGHAPGKPLSDVYLFWDGLRRGLGLADVRIH 256 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 +R A+ +AG + +E+ G Y L Sbjct: 257 DLRHTFASFLVNAGHSLYEVQKLLGHSDPRTTMRYAHLGQASLLAAAQ 304 >gi|260170442|ref|ZP_05756854.1| transposase [Bacteroides sp. D2] gi|315918796|ref|ZP_07915036.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313692671|gb|EFS29506.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 409 Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats. Identities = 35/300 (11%), Positives = 90/300 (30%), Gaps = 26/300 (8%) Query: 54 STPKREYINSPRKKPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKSG--- 107 +T + TL L + + ++ + ++ ++ Sbjct: 93 ATDVKNLFQGGIATQMTLFRLFDRHIEEVRARVGIDVSHRTIPNYLYTRRRLGEFVSKNY 152 Query: 108 ---DFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 D + ++ + IR + R + +L ++ + + A ++ + + ++ Sbjct: 153 NVKDLAFSQLNEQFIREFQDYLILERNLGVETVRHYLAILKKICRIAFKEGHSDRHYFVN 212 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-----RLAFEFLLYSGLRCSDSCRAGVQ 215 K+K R ++E+ ++ + E + R F F Y+G D Sbjct: 213 YPLLKQKVNPPRTLSREEFEKIRDLQFEEHRWSHITTRDMFLFACYTGTAYVDVIFITND 272 Query: 216 HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND---KQKMNATQFSIW 272 +L + K +KLL E + + KM Sbjct: 273 NLSKDDAGDLWLKY--QRGKNGKLCRVKLLPEAIELIEKYKNPSRETLFPKMEYNALKWN 330 Query: 273 FKAKATKAGV--NKSAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRI 329 ++ G+ + H R +++ + G + G + + Y + + Sbjct: 331 LQSIRQLIGMTGPLTYHMGRHSFSSLITLEGGVPIETVSKMLGHSDIKTTQIYARVTPKK 390 >gi|238922801|ref|YP_002936314.1| phage integrase family protein [Eubacterium rectale ATCC 33656] gi|238874473|gb|ACR74180.1| phage integrase family protein [Eubacterium rectale ATCC 33656] Length = 363 Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats. Identities = 49/359 (13%), Positives = 104/359 (28%), Gaps = 38/359 (10%) Query: 17 RHGKI--IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 + GK Y+ G + +T A + ++ L Sbjct: 14 KTGKWTVQCYYENWKGEKKHKKKRGFATKKEAL------EWEREFLKSTSANMEMMLGAF 67 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 + Y + G L + + + + ++ + +IT I + S Sbjct: 68 VDVYFQD-KAGELKERTIKNKQYMIEAHVLPYFANKRMNEITPSDIIQWQNEMRAKGYSQ 126 Query: 134 IQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKR-KTEGIRPWTKEDMQQFKSFWSEG 189 + LF A + NPC V++ + + + WTK + F + Sbjct: 127 TYLRMVQNQITALFTHACNIYNLGNNPCKKVKKMGKADADKLNFWTKAEYDSFIRGIDKE 186 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------------I 233 S+ + FE L ++G R + + I KT Sbjct: 187 SRYFVIFEILFWTGCREGEMLALTKSDIDFENNQISITKTYYRTERRDIITTPKTEQSIR 246 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKF 292 +++P+ K + N + A K + K+GV + H +R Sbjct: 247 VIDIPEFLKKEIEAYVNRCYGLPDNERLFPIVAEAVQHKLKRECAKSGVKQIRVHDLRHS 306 Query: 293 SATISADAGATAHELMATYGWKTVD-QAETYTKGA--DRIRLGIKNSRRISSVVDSDDP 348 + G + G + + TY + ++ +++ + + P Sbjct: 307 HVAYLINQGVQPLIIKERLGHRDIKITLNTYGHLYPNQQKKVA----DMLNATRNENAP 361 >gi|153949027|ref|YP_001401219.1| phage integrase family site specific recombinase [Yersinia pseudotuberculosis IP 31758] gi|152960522|gb|ABS47983.1| site-specific recombinase, phage integrase family [Yersinia pseudotuberculosis IP 31758] Length = 338 Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats. Identities = 60/346 (17%), Positives = 108/346 (31%), Gaps = 41/346 (11%) Query: 1 MTPSLR------LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGS 54 M + LPP V + GK Y F G I L ++ Sbjct: 1 MAGKRKKPKDTDLPPRVYR-----GKSKYEFHPARGGSISLCPLDAP---------ISQV 46 Query: 55 TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI 114 E +N + TL L ++ S + LA+ ++ + Y +++ G+ I Sbjct: 47 WSDYEKVNDRLPEKVTLNKLTEQFLHSMDFCELAIETQKDYRKYSLKLLPVFGEMSPDNI 106 Query: 115 TTKHIRSGVESRKHTPSS-AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 +HIR ++ R T + A + T + +++W + V NPC V++ K Sbjct: 107 RPEHIRKYMDKRGITSRTQANREKTFLSRVYRWGYERGMVKGNPCRGVKQFTEKARDRYI 166 Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233 +E ++ R+A E R +D L+ IK KT Sbjct: 167 TDEEYDAVYQVAPDV---VRVAMEIAYLCLARQADVLALRRDQLREPGIYIKQGKTAARQ 223 Query: 234 TVELPDGFMKLLA-------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG----- 281 + + + I + F+ ++ A Sbjct: 224 IKAWSERLRDAITLAESLPLKSGISSVYIIHQRTGLRYTRDGFNSKWRKAREVAKKTYPE 283 Query: 282 --VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 N + H ++ + T E A G K + Q Y + Sbjct: 284 LDFNFTFHDLKAKGVSDL---EGTLSEKQAISGHKNMGQTARYDRK 326 >gi|15605600|ref|NP_220386.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis D/UW-3/CX] gi|255311708|ref|ZP_05354278.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis 6276] gi|255318009|ref|ZP_05359255.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis 6276s] gi|34222769|sp|O84872|XERD_CHLTR RecName: Full=Tyrosine recombinase xerD gi|3329338|gb|AAC68462.1| Integrase/recombinase [Chlamydia trachomatis D/UW-3/CX] gi|296436423|gb|ADH18597.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis G/9768] gi|296437354|gb|ADH19524.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis G/11222] gi|296438282|gb|ADH20443.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis G/11074] gi|297140783|gb|ADH97541.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis G/9301] Length = 300 Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats. Identities = 33/266 (12%), Positives = 82/266 (30%), Gaps = 24/266 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMR 141 ++ S ++ ++++ +I + + K + ++ + L +++ Sbjct: 23 RGISPLSVQAYCQDVLLFLQRASIEATDRINQESVFLFVEKCHKAKESETTLARRLIALK 82 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--------SEGSQPR 193 V F + + + P + E PK + E++ S+ Sbjct: 83 VFFHFLKDAKMLDQQPFI--EHPKIWKRLPSILSTEEVNSLLDQPLNIPNLDTHIASRDA 140 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL--------- 244 +G+R S+ C + + ++ + + T + + Sbjct: 141 AILYTFYATGIRVSELCDLCIGDISDDFIRVTGKGRKTRLVPISIKAKQAIDAYLSSFRD 200 Query: 245 -LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGA 302 L +E F++ +K++ + A + S H +R AT + A Sbjct: 201 ELQKKNPSEEHVFLSIRGKKLDRSCVWKRITFYAKLVTTKRISPHSLRHAFATHLLNNHA 260 Query: 303 TAHELMATYGWKTVDQAETYTKGADR 328 + G + E YT A Sbjct: 261 DLRIIQEMLGHSRISSTEIYTHVASE 286 >gi|300714681|ref|YP_003739484.1| Site-specific recombinase, phage integrase family [Erwinia billingiae Eb661] gi|299060517|emb|CAX57624.1| Site-specific recombinase, phage integrase family [Erwinia billingiae Eb661] Length = 335 Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats. Identities = 44/302 (14%), Positives = 90/302 (29%), Gaps = 16/302 (5%) Query: 28 GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87 G+RIR + A+ + + KRE ++ + L LI+ + + Sbjct: 20 REGKRIR-RKFERKSEAKAFELHIMATAGKREEWHNTKTDRRKLSELIANWYD---VHGI 75 Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLF 144 + + + + GD +T K + + R + +PS+ + + + +F Sbjct: 76 TMKNGKIERMHLLKTAAHLGDVPASTLTKKLLLNLRSERLKQEVSPSTINRDIYRLSGMF 135 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204 + + ++ + + EG R+A L +G Sbjct: 136 TTLIMLGEYKQANPVRELPALKQAAPEVIFLMPEQITQLLERLEGDDLRVALLC-LSTGA 194 Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264 R S++ ++ K G TV + K + GK Sbjct: 195 RWSEAANLEAIRVRMQRVHFFATKNGKNRTVPISAELEKTIKTKISGKLFNVD------- 247 Query: 265 NATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 F + ++ H +R A+ G L G ++Q Y Sbjct: 248 -YENFRQQLREVIPDLPRGQATHVLRHTFASHFMMNGGNIITLRDILGHSKIEQTMIYAH 306 Query: 325 GA 326 A Sbjct: 307 FA 308 >gi|198277427|ref|ZP_03209958.1| hypothetical protein BACPLE_03641 [Bacteroides plebeius DSM 17135] gi|198269925|gb|EDY94195.1| hypothetical protein BACPLE_03641 [Bacteroides plebeius DSM 17135] Length = 293 Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats. Identities = 41/255 (16%), Positives = 86/255 (33%), Gaps = 23/255 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKHTPS---SAIQFL 137 + + + +S+ D+ D + + +R V S + + L Sbjct: 14 RNYSEKTILSYGIDLDEFEAYFKSVDEEFEFTSVDADVVRGWVLSLMDEGRAETTVNRKL 73 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-----WTKEDMQQFKSFWSEGSQP 192 +S+R + + +RQ+ VA++P V PK+K + EG + Sbjct: 74 SSLRSFYHYLLRQKLVAVDPVAKVVGPKKKKPLPVFVRDEAMNQLLDGFEFPQTFEGVRD 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFMKLL------ 245 + E +G+R ++ + + + T K + D ++L Sbjct: 134 KAMLEVFYSTGMRRAELITLRDEDVDFSALVIKVTGKRNKQRLIPFGDRLQEVLSAYLQE 193 Query: 246 --AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA--GVNKSAHGVRKFSATISADAG 301 E FFI +++ + + K +K KS H +R AT + Sbjct: 194 RARFYSGECEAFFIRKSGVRLSPSSVNYIVKRYLSKVVTLKKKSPHVLRHTFATSMLNHQ 253 Query: 302 ATAHELMATYGWKTV 316 A + G +++ Sbjct: 254 AELEAVKELLGHESL 268 >gi|91774765|ref|YP_544521.1| integron integrase [Methylobacillus flagellatus KT] gi|91708752|gb|ABE48680.1| Integron integrase [Methylobacillus flagellatus KT] Length = 334 Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats. Identities = 33/303 (10%), Positives = 74/303 (24%), Gaps = 48/303 (15%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 L+ R ++ + ++ + + I G R + I + + + A Sbjct: 18 LLDMVRDKLRLKHYSLRTEQAYVDWIKRYILFHGKRHPRDMGAADIEAFLTHLAVKRNVA 77 Query: 134 IQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 + + R+ V + +V + + ++Q + S Sbjct: 78 ASTQNQAKSALLYLYREVLEVELPWLDNVTQANVPKRLPVVLSVSEVQSVLAGLSGTHAL 137 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252 A + L + R ++ ++ K LP+ + L + Sbjct: 138 VAALLYGGGLRLMEAVRLRVKDVDIERREIVVREGKGFKDRVTMLPESVVSALKGHLVKV 197 Query: 253 ETFFINN---------------------------------------------DKQKMNAT 267 + + + M+ Sbjct: 198 KMLHEEDVAAGFGEVYLPFALDKKYPNAGRDWGWQYVFPSRQLSVDPRSGKTRRHHMDEK 257 Query: 268 QFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 K AG+ + H +R AT +G + G V YT Sbjct: 258 GVQRAMKQAVFAAGIAKPATPHTLRHSFATHLLQSGYDIRTVQELLGHSDVSTTMIYTHV 317 Query: 326 ADR 328 +R Sbjct: 318 LNR 320 >gi|13095806|ref|NP_076696.1| integrase [Lactococcus phage bIL309] gi|15672418|ref|NP_266592.1| integrase [Lactococcus lactis subsp. lactis Il1403] gi|12723313|gb|AAK04534.1|AE006280_10 prophage pi1 protein 01, integrase [Lactococcus lactis subsp. lactis Il1403] gi|12830995|gb|AAK08349.1|AF323670_1 integrase [Lactococcus phage bIL309] Length = 377 Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats. Identities = 42/374 (11%), Positives = 106/374 (28%), Gaps = 46/374 (12%) Query: 17 RHGKIIYY---FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 + GK+ Y ++ G+ +L A A + L Sbjct: 6 KRGKVWQYEISYKDTDGKYKKLRKSGFPKKADAISEAGEIEANL-AKGFYTVSQDILLTD 64 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPS 131 ++ + G ++ + + + + + + + + H+ S Sbjct: 65 HFKQWIEIFKKGKVSDGTYRKYLYTLSVLKKHFSTATIKTMNRVKYQEMLNEFAEGHSDS 124 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLS--------VERPKRKTEGIRPWTKEDMQQFK 183 S Q +R + + + + + + K +TK + Sbjct: 125 SVKQINVHVRASLENLLDDFIIKNDFTKGAISKGGKGSKSAELKYLDFEDFTKLIALAKE 184 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG------------- 230 S + + + +G+R S+ ++ I ++T Sbjct: 185 KINPIYSSSFMIYIAAM-TGMRFSELLGLTWDNVDFEKGQIYVKRTWDIYKNNFAPTKND 243 Query: 231 ------------TIITVELPDGFMKLLAMTPIGKETFFINNDKQK--MNATQFSIWFKAK 276 + + + KLL I E F+ + + + + + Sbjct: 244 QSVRFLAIDSSTMQVMINYKEQQEKLLKRLEIEPEHPFVFYNIKNGLITNNSLNKQLRNM 303 Query: 277 ATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGI 333 K G K + HG+R A+ G + G +++ Y+ + Sbjct: 304 CKKLGFKKIITCHGLRHTHASTMLYKGINILYVSKRLGHSSLNVTMSVYSHILKELEEKD 363 Query: 334 -KNSRRISSVVDSD 346 +N ++I S ++ + Sbjct: 364 NENIKKIFSEINDE 377 >gi|306842844|ref|ZP_07475484.1| site-specific tyrosine recombinase XerD [Brucella sp. BO2] gi|306287038|gb|EFM58549.1| site-specific tyrosine recombinase XerD [Brucella sp. BO2] Length = 247 Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats. Identities = 31/234 (13%), Positives = 70/234 (29%), Gaps = 27/234 (11%) Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + ++ P+S + L+++R F++ + + +P ++ PK++ + + E++ + Sbjct: 1 MAAQGFAPTSQARRLSALRQFFRFLYSEGFRQDDPTGILDAPKKQKPLPKIMSVENVGKL 60 Query: 183 KSF-------------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQK 228 + + E L +GLR S+ V + + + K Sbjct: 61 LDRAALEADEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGK 120 Query: 229 TGTIITVELPDGFMKLLAMTP------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 V L + L G + + F + Sbjct: 121 GSKDRMVPLSRKAREALQKFLTLRDSLPGSDDNPWLFPAFSESGHLARQVFARELKGLAA 180 Query: 283 N-------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 S H +R A+ GA + G + + YT + Sbjct: 181 RAGLAASSVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEER 234 >gi|289525911|emb|CBJ15393.1| integrase/recombinase [Chlamydia trachomatis Sweden2] gi|296435499|gb|ADH17677.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis E/150] Length = 300 Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats. Identities = 33/266 (12%), Positives = 83/266 (31%), Gaps = 24/266 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMR 141 ++ S ++ ++++ +I + + K + ++ + L +++ Sbjct: 23 RGISPLSVQAYCQDVLLFLQRASIEATDRINQESVFLFVEKCHKAKESETTLARRLIALK 82 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--------SEGSQPR 193 V F + + + P + E PK + E++ S+ Sbjct: 83 VFFHFLKDAKMLDQQPFI--EHPKIWKRLPSILSTEEVNSLLDQPLNIPNLDTHIASRDA 140 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---ITVELPDGFMKLLAMTPI 250 +G+R S+ C + + ++ + + T I+++ L+ Sbjct: 141 AILYTFYATGIRVSELCDLCIGDISDDFIRVTGKGRKTRLVPISIKAKQAIDAYLSSFRD 200 Query: 251 GKETFFINNDKQKMNATQ----FSIWFKAKATKAGV----NKSAHGVRKFSATISADAGA 302 + + + ++ S +K A + S H +R AT + A Sbjct: 201 ELQKKNPSEEHVFLSIRGKKLDRSCIWKRITFYAKLVTTKRISPHSLRHAFATHLLNNHA 260 Query: 303 TAHELMATYGWKTVDQAETYTKGADR 328 + G + E YT A Sbjct: 261 DLRIIQEMLGHSRISSTEIYTHVASE 286 >gi|302187933|ref|ZP_07264606.1| site-specific recombinase, phage integrase family protein [Pseudomonas syringae pv. syringae 642] Length = 328 Score = 102 bits (253), Expect = 9e-20, Method: Composition-based stats. Identities = 61/334 (18%), Positives = 116/334 (34%), Gaps = 36/334 (10%) Query: 1 MTPSLR---LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPK 57 M P + LPP + +HG Y+ G+ RL + AY + G + Sbjct: 1 MRPRKKDRHLPPCMYL---KHG---AYYLVRKGKWERLGNDF-QEALLAYAKIVGGKSNG 53 Query: 58 REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117 + LI E + L+VN+ +E+ ++ +F+ R++ + Sbjct: 54 GMSL------------LIDEALDAMR-RRLSVNTIKQYEAASVRLKTYLEEFEPRQVLPR 100 Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 H+ + TP+ A + ++ +R++F +A+ ++ V NPC + R K E Sbjct: 101 HVAALKLHMSDTPNMANRVISFLRMVFAYALERQIVDSNPCTGIRRHAEKKRDRYISDAE 160 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237 + S + +E +G R SD + + + + + QKTG + V + Sbjct: 161 FAAICAASSEYMS---VIWEMCFLTGQRISDVLNIKLSDISDIGIAFEQQKTGAKLIVGM 217 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQ------KMNATQFSIWFKAKATKAG-VNKSAHGVR 290 LL ++ + F+A AG + + H +R Sbjct: 218 SQDLKALLDRVHALPRKIRGATLFCARSGGKPVSYDTCKMSFRAACKAAGVIGATIHDLR 277 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324 S T + G G Y + Sbjct: 278 AKSLTDTDRQGNN---AQMLGGHSDPRMTARYLR 308 >gi|266619164|ref|ZP_06112099.1| site-specific recombinase, phage integrase family [Clostridium hathewayi DSM 13479] gi|288869310|gb|EFD01609.1| site-specific recombinase, phage integrase family [Clostridium hathewayi DSM 13479] Length = 402 Score = 102 bits (253), Expect = 9e-20, Method: Composition-based stats. Identities = 48/388 (12%), Positives = 97/388 (25%), Gaps = 70/388 (18%) Query: 1 MTPSLRLPPFVTKERTRHGKIIYYFRK--GHGRRIRLPYPHESTFIPAYMSALTGSTPKR 58 M R P R G + Y R G+++ L +A Sbjct: 1 MAKKNRSVPQ-YGTVMRKGILYYRTRIQDADGKQVSLYATTCEELYEKQQAAKKQVEEIV 59 Query: 59 EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTK 117 P T+ ++ ++ + ++ S II+ GD ++T Sbjct: 60 FRRKHP-----TVAEYCEKWLL-MQSAKVSSATMKAYTSDMRNYIIKPLGDMYMEEVTAD 113 Query: 118 HIRSGVESRKHTP-SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 IR + + ++ +F A R E + NPC+ + K + Sbjct: 114 DIRLALVPLTNKSEGLYNTVNMLIKCIFYSAERSELITYNPCVGISAKGGKPTKKKDALT 173 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 + + +G P L LYSGLR ++ + + + + Sbjct: 174 DQQVEVLLDTVKGLPPYLFIMICLYSGLRREEALGLHWDCVFLDAPTPYISVRRAWRSEH 233 Query: 237 LPDGFMKLLAMTPIGKETFFINN---------------------DKQKMNATQFSIWFKA 275 +L ++ + + +QF ++ Sbjct: 234 NRPVVSTVLKTPAAKRDIPIPKCLVDCLREAKENSISDYVIADSKGEPLAYSQFQRVWQY 293 Query: 276 KATKA-------------------------------GVNKS------AHGVRKFSATISA 298 ++ + + H +R T Sbjct: 294 VVVRSTKPRNYYKYVNGESIKYTVTPTLGMTQKNQPKIKYTIDFDVTPHQLRHTYITNLL 353 Query: 299 DAGATAHELMATYGWKTVDQAE-TYTKG 325 AG + G + Y K Sbjct: 354 YAGVNPKTVQYLAGHENSKTTMDIYAKV 381 >gi|257880662|ref|ZP_05660315.1| phage integrase [Enterococcus faecium 1,230,933] gi|257814890|gb|EEV43648.1| phage integrase [Enterococcus faecium 1,230,933] Length = 346 Score = 102 bits (253), Expect = 9e-20, Method: Composition-based stats. Identities = 31/326 (9%), Positives = 84/326 (25%), Gaps = 25/326 (7%) Query: 15 RTRHGKIIYYFR-KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 R +G+ +L + + + R TT Sbjct: 5 VKRGKSYRAQVSLYKNGQHKKLSKTFATKKEATLWALEMELAKGEGKELAER--TTTFAD 62 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPS 131 + + + ++ I D + + ++ ++ H+ Sbjct: 63 FFENWIYLVKVNDIKETTFQNYVRTLGVIRNLFEDIQLKDLNDIVVQKKIDEYAETHSRK 122 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP---WTKEDMQQFKSFWSE 188 + + L ++ + A + Y+A + V+ T + Sbjct: 123 TTHEVLLKIKTALRDAYARGYIANDFARLVKTRGVNPPKRNKALSITNFKKLRNYVLQHP 182 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-----------QKTGTIITVEL 237 + + L +G+R + ++L ++ + V + Sbjct: 183 EDEFNVLVLLALETGMRRGELLAIKPENLYEYGIEVRHSISPTSDDTSLKTQNAKRDVSI 242 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATI 296 +L+ P+ + + + K + G+ K+ HG+R A+ Sbjct: 243 NKEVYELIRQIPVKENGYIFSFGGFKQSEQ-----LAELLESLGIEKTTFHGLRDTHASF 297 Query: 297 SADAGATAHELMATYGWKTVDQAETY 322 + G + + Y Sbjct: 298 LFAQDIDIAYVSKRLGHINIQTTQNY 323 >gi|210615472|ref|ZP_03290599.1| hypothetical protein CLONEX_02815 [Clostridium nexile DSM 1787] gi|210150321|gb|EEA81330.1| hypothetical protein CLONEX_02815 [Clostridium nexile DSM 1787] Length = 387 Score = 102 bits (253), Expect = 9e-20, Method: Composition-based stats. Identities = 47/355 (13%), Positives = 96/355 (27%), Gaps = 51/355 (14%) Query: 17 RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76 + G F G+R + + T T E + K TL Sbjct: 25 KDGLYQARFINRFGKRQTI---YAKTLNEVRHKLRTEQYN-DEKAINVVDKNMTLDEWFD 80 Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136 + + + +++ S+ +++ +I + G + ++ K T ++ Sbjct: 81 IWLSTCK-KNCRSSTKGSYITHYKRIQEELGWRKLTSLNLIVMQEAFNKLK-TDNARKNS 138 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194 + + AV + + N + + + R T + + F ++G+ Sbjct: 139 KKILVDMLNRAVDTDLLVKNVAKQINTVIAKEEKKERRVLTIRETELFLE-QAKGTFYEN 197 Query: 195 AFEFLLYSGLRCSDSCRAGVQHL-------QNNIFSIKTQKTGTIITVELPD-------- 239 F L +GLR + + + K G + Sbjct: 198 LFILALETGLRVGELSALQWEDIDFKKKVIHVKHTLCYFSKNGKYVFEMHDTKTNNGKRT 257 Query: 240 ----------------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT----- 278 +++ KE F K N Sbjct: 258 IPLTAKAINSLKCQKLQKQEIILKGKTAKEEFQNLVFVTKNNQPTQQFLINQCMQLVIQN 317 Query: 279 --KAGVNKSA---HGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGAD 327 KAG++ S H +R AT + + G L G T+ Y + Sbjct: 318 MNKAGIDFSPFTLHTLRHTFATRAIECGMNPKTLQKLLGHGTLQMTMDLYCHVTE 372 >gi|149921935|ref|ZP_01910378.1| Phage integrase [Plesiocystis pacifica SIR-1] gi|149817197|gb|EDM76675.1| Phage integrase [Plesiocystis pacifica SIR-1] Length = 369 Score = 102 bits (253), Expect = 9e-20, Method: Composition-based stats. Identities = 42/351 (11%), Positives = 87/351 (24%), Gaps = 36/351 (10%) Query: 10 FVTKERTRHGKII--YYFRK----GHGRRIRLPYP---HESTFIPAYMSALTGSTPKREY 60 + + + G++ + G+R + + A+ L Sbjct: 4 YKKRWTGKDGRVRTKWMVHIKHTGPDGKRKEIRRVSPVNTRRGAEAFERELRDKLLPGAR 63 Query: 61 INSPR----KKPTTLKWLISEYRKSAHWGSLA------VNSRISFESYF-DQIIRKSGDF 109 R + TL+ E+ + + +I G+ Sbjct: 64 GKDKRTQHIRSAPTLEDFAPEFLAFQASPGASRKGPNKPGELREKRRTLDNHLIPAFGEL 123 Query: 110 DYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQ---EYVAINPCLSVER 163 +I + I + + + S+ L ++ L A R + + P Sbjct: 124 RLDEIRARDIDRYITRKHADGLSTSTISNHLIVLKRLLNVARRWELLDRIPEIPTPKKPA 183 Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223 + + R GLR D G Q + Sbjct: 184 RTDFLSKDEARALLVGAEEQWRSLVLLGLRTGLRLGELRGLRWRDVDLEGGQVRVEQAVT 243 Query: 224 IKTQKTGTI---ITVELPDGFMKLLAMTPIGKETFFI-----NNDKQKMNATQFSIWFKA 275 T +V L + LA+ + +D + + Sbjct: 244 NAGIGTPKSGKGRSVPLARDIREALAVRRGPRRRKPDTLVFAQSDGRPLAHNTIGRALTR 303 Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 A AG+ + + H +R A+ + AG + G + Y Sbjct: 304 AAEAAGIERRITPHVLRHTFASHAVLAGVPIRIVQGWLGHADITMTMRYAH 354 >gi|97954418|emb|CAJ43593.1| integrase [Enterobacteria phage PhiD145] Length = 331 Score = 102 bits (253), Expect = 9e-20, Method: Composition-based stats. Identities = 56/322 (17%), Positives = 104/322 (32%), Gaps = 24/322 (7%) Query: 14 ERTRHGKIIYYFRK--GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 ++ G+ R G+RIR A+ + + +E++ P TL Sbjct: 4 KKLDDGRYEVDVRPQGADGKRIR-RKFKTKGEAQAFERHVLVNYHNKEWLEKP-ADRRTL 61 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHI---RSGVES 125 L+ + + + II K + ++T K I R + + Sbjct: 62 TELLGRWW---IYHGKSHERGDIERGRLTTIIAKFAEMGVSRADQLTKKTITDYRVVMMN 118 Query: 126 RKHTPSSAIQFLTSMRVLF-KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 P+S + L M +F K EY + NP V+R + + + E++ + S Sbjct: 119 DGLKPASVNRHLAIMSGMFTKLIDAGEYHSHNPFREVKRLREAVTEMAFLSSEEITRLLS 178 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 A L +G R S+ +H+ N + + K G T+ + +K Sbjct: 179 --MLDGDELNATLVCLSTGGRWSEVSNLKAEHIINQMVTFMKTKNGKRRTIPVSQDLIKR 236 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATA 304 + G+ + + + ++ H +R AT G Sbjct: 237 IKTKNSGRLFNA--------SYYKVRNALREVKPDLLDGQAVHVLRHTFATHFIMNGGNI 288 Query: 305 HELMATYGWKTVDQAETYTKGA 326 L G + Q TY A Sbjct: 289 ITLQRILGHSHIQQTMTYAHFA 310 >gi|259909532|ref|YP_002649888.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96] gi|224965154|emb|CAX56686.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96] Length = 344 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 46/314 (14%), Positives = 92/314 (29%), Gaps = 35/314 (11%) Query: 55 TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRI-----SFESYFDQIIRKSGDF 109 P P +L L+ + K + + + + ++ G Sbjct: 15 DDIYRQPVGPAHDPKSLYALLLRFVKWRRERNWSETTLKVQTHHGYRFIC--WAQERGIH 72 Query: 110 DYRKITTKHIRSGVESRKH---------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 +T + +P + L ++V F+W +Q + NP Sbjct: 73 HAADVTRPVLERWQRHLYRYRKGNGEPLSPRTQRTALQPLQVWFRWLAKQNLILANPAAD 132 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSE-----GSQPRLAFEFLLYSGLRCSDSCRAGVQ 215 +E P+ + R + + + G + R E L +G+R + R Sbjct: 133 LELPRLEKHLPRTILSVEQVEDIVNLCDLNTLQGMRDRALLELLWSTGIRRGEVARLETW 192 Query: 216 --HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--------- 264 I +I K + + + + L + K Sbjct: 193 SADFSRKILTIVQGKGKQDRVIPVGERALWWLRHYLHEVRPEIVAVAGCKALFVAMDGVA 252 Query: 265 --NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321 A + AG+ K S H R AT + GA + A G ++V+ + Sbjct: 253 GLTANGITHAVVPYLRAAGIEKGSCHLFRHAMATQMLENGADLRWIQAMLGHRSVESTQI 312 Query: 322 YTKGADRIRLGIKN 335 YT+ + + + Sbjct: 313 YTQVSIKALQAVHA 326 >gi|168208010|ref|ZP_02634015.1| putative integrase/recombinase [Clostridium perfringens E str. JGS1987] gi|170660693|gb|EDT13376.1| putative integrase/recombinase [Clostridium perfringens E str. JGS1987] Length = 284 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 28/272 (10%), Positives = 67/272 (24%), Gaps = 26/272 (9%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVESR------ 126 ++ L+ + +E + +T + + ++ Sbjct: 7 KFLNIESNNGLSEGTLKKYEIDLNLFFEYMEHKQNIKSLNSVTGEEGQKIIDRYINYLKR 66 Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + PS+ + S+ K+ + + + ++ Sbjct: 67 EGYKPSTINGKIVSINKFLKYLGHEFKAKAIKVQNKMYIENIISEREF------ERLIRA 120 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 + + L +GLR S+ + K G + L K+L Sbjct: 121 CKDNKRDYTIIMTLANTGLRISELLSLTIND-PKKESIYIYGKGGKGRELILSPQLKKIL 179 Query: 246 AMTPIGKETFFINN-----DKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATIS 297 ++ + + K G+ H R F A Sbjct: 180 NDYIDNYRMKTHKRLLFTGERGALKRNAINKMLLKYQKKTGISKEKMHPHSFRHFYAKYL 239 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRI 329 G + G + ++ YTK + + Sbjct: 240 ISKGIGLDIIQTLLGHENINTTSIYTKSSKKE 271 >gi|251772880|gb|EES53439.1| putative phage integrase [Leptospirillum ferrodiazotrophum] Length = 337 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 46/318 (14%), Positives = 92/318 (28%), Gaps = 15/318 (4%) Query: 16 TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75 R I++ R + A + I+ K K Sbjct: 4 KRKDSPIWWVSFTVRGRRTRCSAGTTDKAQALELHDRWKSEAWREISLKEKPKLGWKEAA 63 Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SS 132 ++ + + E++ I +I + I S +K T ++ Sbjct: 64 LKWLEVKSAK----ATIHDDEAHLLFIQNFWKGKKLSEIGKEEIDSLKVKKKATGVSNAT 119 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 + L+ +R + + + + ++ P VE + IR TKE+ + S+ E Sbjct: 120 VNRMLSLVRAILRMSFKLGWIESVP--PVELMPEPKKRIRWLTKEEAAKLLSYLPE--HQ 175 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMTPIG 251 F L +GLR + + + + Sbjct: 176 ERIARFALLTGLRQGNILGLEWSQVDLVRKVLWIHADQAKGRKAIGIPLPDAAVTLLREL 235 Query: 252 KETFFINNDKQKMNA--TQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELM 308 K N ++ ++ KAG+ H +R A+ G + L Sbjct: 236 SGQHPQWVFTYKGNRINQVNTLAWRKALKKAGIENFRWHDLRHCWASWHIQDGTPLYALK 295 Query: 309 ATYGWKTVDQAETYTKGA 326 GW+++D Y+ A Sbjct: 296 ELGGWESMDMVMRYSHMA 313 >gi|291459642|ref|ZP_06599032.1| phage integrase [Oribacterium sp. oral taxon 078 str. F0262] gi|291417674|gb|EFE91393.1| phage integrase [Oribacterium sp. oral taxon 078 str. F0262] Length = 364 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 44/342 (12%), Positives = 100/342 (29%), Gaps = 34/342 (9%) Query: 11 VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 V ++ + G +R R + A+ + + T Sbjct: 3 VYRD-GKTGTWRVIYRYTDYTGERKQ--TQKRGFQTRREAVAWEHEQIIKTTASLD--MT 57 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR--- 126 Y L N+ + E +I+ + +I ++ I + Sbjct: 58 FGSFYERYAADIRPR-LKENTWNTKEHIICTKILPYFQNRKMIEIKSRDIVAWQNELLTC 116 Query: 127 ------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP-KRKTEGIRPWTKEDM 179 + + + LF A++ + NP K + + + WT+E+ Sbjct: 117 RDKTGKPFSQTYLKTIHNQLSALFNHAMKFYGLRANPARQAGNMGKEERKEMLFWTQEEY 176 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------- 232 ++F + Q AFE L + G+R + ++ K+ Sbjct: 177 RKFADVMMDKPQSFYAFEMLYWCGIREGELLALTPADFDFYAGTVTINKSYQRIRGRDVI 236 Query: 233 ---------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 T+++PD + + + + + A +A V Sbjct: 237 TDPKTPKSNRTIQMPDFLTEEIQEYMELLYGIEEKDRMFTVTKSYLHHEMDRGAKEAKVK 296 Query: 284 K-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + H +R ++ + G +A + G +++D Y Sbjct: 297 RIRIHDLRHSHISLLIEMGFSAVAIADRVGHESIDITYHYAH 338 >gi|288926827|ref|ZP_06420735.1| integrase [Prevotella buccae D17] gi|288336399|gb|EFC74777.1| integrase [Prevotella buccae D17] Length = 407 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 39/312 (12%), Positives = 89/312 (28%), Gaps = 25/312 (8%) Query: 54 STPKREYINSPRKKPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKSG--- 107 +E + T L ++ + S++ + +E Sbjct: 92 LERIKEEFLGKKGDIDTFMALFEKHNEDFRKQVGVSVSATTLRKYELCKRHFAEFLKQKY 151 Query: 108 ---DFDYRKITTKHIRSGVESRKHTPS----SAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 D ++T I + +A + + + + R+ V + + Sbjct: 152 SRTDIKLCELTYTVIYDFDLYLQTAAGQCRNTATKTMKIFKTI-TILGRKLGVLHHDPFA 210 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHL 217 + T E++ + + + R F F ++GL D +HL Sbjct: 211 NYHFHLELVDRGFLTDEEILKIVNKKLTIPRLSLVRDIFIFSCFTGLSYIDVANLTPEHL 270 Query: 218 QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--NATQFSIWFKA 275 N VE + + + K + + + + K Sbjct: 271 VNMDDKQWIMTKRQKTNVESNILLLDIPKQIIAKYSNKTYRDSKLFPVLSNQKMNAYLKE 330 Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 A G+ K + H R AT+S G + G + + Y + ++ I Sbjct: 331 IADICGIGKNLTFHMARHTFATMSLSKGVPMESVSKMLGHTNLKTTQIYARITNKK---I 387 Query: 334 KN-SRRISSVVD 344 ++ ++ +D Sbjct: 388 EHDMEELAGKLD 399 >gi|160936304|ref|ZP_02083674.1| hypothetical protein CLOBOL_01197 [Clostridium bolteae ATCC BAA-613] gi|158440773|gb|EDP18504.1| hypothetical protein CLOBOL_01197 [Clostridium bolteae ATCC BAA-613] Length = 366 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 55/365 (15%), Positives = 105/365 (28%), Gaps = 41/365 (11%) Query: 15 RTRH-GKI--IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 R ++ GK + G+ I T A + + Sbjct: 5 RDKNTGKWMSQIRVKDWTGKEIHKKKRGFKTKKEALQWEQDFISQADGSLG------MKF 58 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVES----- 125 K ++ Y K A L + + F +++ G+ I IR+ Sbjct: 59 KDFVALYMKDADPR-LRETTLANKHYLFNKKVLPYFGEMPINAIKPTDIRNWQNELINYR 117 Query: 126 ----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDMQ 180 R ++P+ + F +AV+ + NPC +K + + WT E+ + Sbjct: 118 RPNGRGYSPTYLRTINNQLTAAFNFAVKFYGLRENPCHKAGTMGKKNADEMLFWTNEEFK 177 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------- 232 F F + Y+GLR + + + + I K Sbjct: 178 VFIKAMESRPVGYTVFMVMYYTGLRVGELLALTPEDIDFDRHIISVNKNYQHLNGKDYIY 237 Query: 233 --------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-N 283 V +P L + + K +G Sbjct: 238 PPKTEAGYREVVMPKVLESCLKDYLAKLYDVQPTDRIFPYDRGWVGRQMKYGCDHSGTQK 297 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSV 342 H VR A++ D G T + G + V TY+ + + + ++ ++ Sbjct: 298 IRVHDVRHTHASLLIDMGCTPLLVAERLGHERVQTTMETYSHLYPNKQ--SEVANQLDAM 355 Query: 343 VDSDD 347 + DD Sbjct: 356 AEKDD 360 >gi|228958379|ref|ZP_04120103.1| YdcL (Lambda integrase-like, N-terminal,DNA breaking-rejoining enzyme, catalytic core) [Bacillus thuringiensis serovar pakistani str. T13001] gi|228801334|gb|EEM48227.1| YdcL (Lambda integrase-like, N-terminal,DNA breaking-rejoining enzyme, catalytic core) [Bacillus thuringiensis serovar pakistani str. T13001] Length = 363 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 46/343 (13%), Positives = 96/343 (27%), Gaps = 39/343 (11%) Query: 11 VTKERTRHGKIIYYFR----KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 V K++ R G + R G ++++ + + Sbjct: 3 VYKDKER-GTYFFVVRVRQFDGTQKQVKRRGFKTKKEAREAEAKMLVEKE--------TH 53 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVES 125 T + Y S + + +I++ +IT KHI Sbjct: 54 SSLTFAQVADSYFDWY-CQRRKHTSINVIRNIIYNHLIQEFNKIKIDQITAKHIMHYQNK 112 Query: 126 RKHTPSS--AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + S+ + T + +F +A++ + NP ++++ + + D Sbjct: 113 IINNYSADHLKKIHTVLSSIFNFAIKFHGLTNNPARIAGNFEKESNKRMNFWEFDEFHQF 172 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN------------NIFSIKTQKTGT 231 + + F L YSG R + + + N K + + Sbjct: 173 IDSVDDLLYKTFFSTLYYSGARKGELLALTWEDINFEEKTININKTEFNRKITKPKTKSS 232 Query: 232 IITVELPDGFMKLLAMTPIG--------KETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 + LP + LL ++A+ + AGV Sbjct: 233 NRIIMLPSLVVDLLKNLKEHATVKSSIKINYVVFGEFYTSISASTLDRKYTNYVLNAGVK 292 Query: 284 K-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 + H R A+ + G + + G V TY+ Sbjct: 293 RILLHEFRHSHASYLINKGVSPLIVAQRLGHSDVATTLNTYSH 335 >gi|198242564|ref|YP_002214507.1| prophage DLP12 integrase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197937080|gb|ACH74413.1| prophage DLP12 integrase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326622256|gb|EGE28601.1| prophage DLP12 integrase [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 387 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 49/379 (12%), Positives = 114/379 (30%), Gaps = 57/379 (15%) Query: 17 RHGK-IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75 R G+ + G+RI+ + A T + Sbjct: 5 RRGEIWYASYSLPGGKRIKESL-GTADKRQAQELHDKRKAELWRVDKLGDFPEVTFEEAC 63 Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP----- 130 + + S + + + + IT I + V ++ Sbjct: 64 LRWLEEKADKK----SLDTDKGRMGFWLEHFEGVRIKDITEAKIYAAVSRMQNRKVKEIW 119 Query: 131 ------------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 S+ + L ++ + + A +++ + ++ P Sbjct: 120 QQKVESAKRKGKEAPVFEPKPVTTSTKAKHLALIKAILR-AAERDWKWLEKAPVIKVPSV 178 Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IF 222 + + +R +++ ++ E + +F L +GLR S+ Q + Sbjct: 179 RNKRVRWLERDEAKRLIEECPE--PLKSVVKFALATGLRRSNIINMEWQQIDMQRRVAWV 236 Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------------FS 270 + + K+ I V L D K+L + + K+ + Sbjct: 237 NPEDSKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKEGIRPDGSKTPTVRKMRVDDQ 296 Query: 271 IWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + A +AG+ + H +R A+ +G L GW++++ Y A Sbjct: 297 RAWNAACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNH 356 Query: 330 RLGIKNSRRISSVVDSDDP 348 +++++I S+ D P Sbjct: 357 --LTEHAKQIDSIFSDDVP 373 >gi|324993830|gb|EGC25749.1| phage integrase family integrase/recombinase [Streptococcus sanguinis SK405] gi|324994849|gb|EGC26762.1| phage integrase family integrase/recombinase [Streptococcus sanguinis SK678] gi|327474704|gb|EGF20109.1| phage integrase family integrase/recombinase [Streptococcus sanguinis SK408] Length = 328 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 35/264 (13%), Positives = 80/264 (30%), Gaps = 14/264 (5%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESRK 127 L+ + + + S ++ + ++ R +TT +R + RK Sbjct: 51 SKLLELFISAKRIEGCSEKSLKYYKIVIENMLISL-KTAIRDLTTGDLRTYLAHYQQERK 109 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + + F W ++Y+ +P + + K ++ E ++ + Sbjct: 110 SSKVTIDNMRRIFSSFFGWLEDEDYILKSPVRRIHKIKTDKTIKETFSDEGLELLRDACD 169 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKLLA 246 E + + L +G+R + R + + K + V L Sbjct: 170 E-IRDLAMIDLLASTGMRVGELVRLNREDINFYERECLVFGKGNSERIVYFDARTKIHLI 228 Query: 247 MTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299 ++ + ++ + KA +NK H R+ AT + D Sbjct: 229 NYLDNRQDDNPALFVSLSFPYNRLLIGGVETRLRQIGEKADLNKVHPHKFRRTLATRAID 288 Query: 300 AGATAHELMATYGWKTVDQAETYT 323 G ++ G +D Y Sbjct: 289 KGMPIEQVQHLLGHVKIDTTMHYA 312 >gi|228952475|ref|ZP_04114556.1| YdcL (Lambda integrase-like, N-terminal,DNA breaking-rejoining enzyme, catalytic core) [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228807212|gb|EEM53750.1| YdcL (Lambda integrase-like, N-terminal,DNA breaking-rejoining enzyme, catalytic core) [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 363 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 45/343 (13%), Positives = 96/343 (27%), Gaps = 39/343 (11%) Query: 11 VTKERTRHGKIIYYFR----KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 + K++ R G + R G ++++ + + Sbjct: 3 IYKDKER-GTYFFVVRVRQFDGTQKQVKRRGFKTKKEAREAEAKMLVEKE--------TN 53 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVES 125 T + Y S + + +I++ +IT KHI Sbjct: 54 SNLTFAQVADSYFDWY-CQRRKHTSINVIRNIIYNHLIQEFNKIKIDQITAKHIMHYQNK 112 Query: 126 RKHTPSS--AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + S+ + T + +F +A++ + NP ++++ + + D Sbjct: 113 IINNYSADHLKKIHTVLSSIFNFAIKFHGLTNNPARIAGNFEKESNKRMNFWEFDEFHQF 172 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN------------NIFSIKTQKTGT 231 + + F L YSG R + + + N K + + Sbjct: 173 IDSVDDLLYKTFFSTLYYSGARKGELLALTWEDINFEEKTININKTEFNRKITKPKTKSS 232 Query: 232 IITVELPDGFMKLLAMTPIG--------KETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 + LP + LL ++A+ + AGV Sbjct: 233 NRIIMLPSLVIDLLKNLKEHATVKSPIKINYVVFGEFYTSISASTLDRKYTNYVLNAGVK 292 Query: 284 K-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 + H R A+ + G + + G V TY+ Sbjct: 293 RILLHEFRHSHASYLINKGVSPLIVAQRLGHSDVATTLNTYSH 335 >gi|31616157|gb|AAP55251.1| integrase protein [Staphylococcus aureus] Length = 378 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 46/381 (12%), Positives = 109/381 (28%), Gaps = 52/381 (13%) Query: 11 VTKERTRHGKIIYYF--------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62 + K + G Y F +R + L ++N Sbjct: 2 IKKYTKKDGSTAYMFVAYLGIDPITRKQKRTTRRGFKTEREAKLAEAKLQTEVQANGFLN 61 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122 + TT K + + + + + I+ + + IT + + Sbjct: 62 NEI---TTFKQVYDLWLEQYKHTVRESTYQRVVTLFNTAILEHFNNVSIKSITIPYCQRV 118 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK----RKTEGIRPWTKED 178 + +F++ V + + NP ++P+ + + +++++ Sbjct: 119 INKWNDKYKDMKAIRIYTSNVFEYDVNLKIITENPFKHTKQPRKKETPQEDSYVYYSRDE 178 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------ 232 +Q F SF F L ++G R + + +I KT Sbjct: 179 LQTFLSFVEGNLVDYAIFRTLAFTGFRRGELMALTWNDINFEKKTITINKTCARGNNYKP 238 Query: 233 -----------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF------------ 269 T+ + D + +L + + T + + QF Sbjct: 239 IIQPPKTKSSYRTISVDDKTLSILKQWKVQQRTESLKFGHNALKKDQFVFTNVSTNKRLY 298 Query: 270 ----SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYT 323 + K + HG R ++ +AG T E+ G + Y Sbjct: 299 PEYCNKVLANVCKKHNFKQIKLHGFRHVHCSLLFEAGLTIQEVQDRLGHGDIKTTMDIYA 358 Query: 324 KGADRIRLGIKNSRRISSVVD 344 ++ R + + + ++ ++ Sbjct: 359 HVTEKQR--DQVAEKFANYIN 377 >gi|255507490|ref|ZP_05383129.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis D(s)2923] gi|296439216|gb|ADH21369.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis E/11023] Length = 300 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 34/266 (12%), Positives = 82/266 (30%), Gaps = 24/266 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMR 141 ++ S ++ ++++ +I + + K + ++ + L +++ Sbjct: 23 RGISPLSVQAYCQDVLLFLQRASIEATDRINQESVFLFVEKCHKAKESETTLARRLIALK 82 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--------SEGSQPR 193 V F + + + P + E PK + E++ S+ Sbjct: 83 VFFHFLKDAKMLDQQPFI--EHPKIWKRLPSILSTEEVNSLLDQPLNIPNLDTHIASRDA 140 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL--------- 244 +G+R S+ C + + ++ + + T + + Sbjct: 141 AILYTFYATGIRVSELCDLCIGDISDDFIRVTGKGRKTRLVPISIKAKQAIDAYLSSFRD 200 Query: 245 -LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGA 302 L +E F++ +K++ + A + S H +R AT D A Sbjct: 201 ELQKKNPSEEHVFLSIRGKKLDRSCVWKRITFYAKLVTTKRISPHSLRHAFATHLLDNHA 260 Query: 303 TAHELMATYGWKTVDQAETYTKGADR 328 + G + E YT A Sbjct: 261 DLRIIQEMLGHSRISSTEIYTHVASE 286 >gi|77164210|ref|YP_342735.1| Phage integrase [Nitrosococcus oceani ATCC 19707] gi|76882524|gb|ABA57205.1| Phage integrase [Nitrosococcus oceani ATCC 19707] Length = 310 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 40/295 (13%), Positives = 92/295 (31%), Gaps = 36/295 (12%) Query: 77 EYRKSAHW-GSLAVNSRISFESYF----DQIIRKSGDFDYRKI--TTKHIRSGVESRKHT 129 ++ H+ + + ++ S + S D+ T + + + R Sbjct: 14 DFLAHLHYAKGYSQGTCYAYHSDLGIWGRWLEEASKDWRQATHLDTEQFVAWQMRKRGTK 73 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT-------------- 175 + + + +KWA++ V +P ++PKR Sbjct: 74 AHIVARRSSCLGSFYKWAMKNALVESDPIYLADKPKRPYRIPVWLEKEEQRAFQEAVQRV 133 Query: 176 -----KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----- 225 + + + + + F +L SGLR S++ V+ ++ K Sbjct: 134 EDLPENIFGRTQEHIKAVRRRYDVLFGLILNSGLRISEALAVKVRDVRMVNGVAKSVRII 193 Query: 226 ---TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 ++ + L F ++ + + +AG+ Sbjct: 194 GKGNRERLVPLPEAFGQVLGAWLQGRGGEDFVFAKAPGEKPPGPHAVRAYLRRLIERAGI 253 Query: 283 NK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 +K + H +R AT ++GA ++ A G + + YT ++ GI Sbjct: 254 DKPVTPHKLRHTYATRLLESGAELVDIQALLGHVDLSTTQIYTHVSEERMAGIVA 308 >gi|319442272|ref|ZP_07991428.1| integrase/recombinase [Corynebacterium variabile DSM 44702] Length = 312 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 41/290 (14%), Positives = 85/290 (29%), Gaps = 39/290 (13%) Query: 74 LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKHTP 130 L ++ + L+ N+ ++ D+ + T I + + Sbjct: 8 LRRDWFRHLRTERGLSSNTLENYGRDADRYLTWLEGEGLTVATATVADIERFITDLRKGH 67 Query: 131 ----------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED-- 178 +SA + L+++R L +A R + +V +++ + + T + Sbjct: 68 EVTGGRPLAQTSAARSLSTVRSLHAFAARDRGIPDA-ADAVPVTQQRADLPKALTIDQVT 126 Query: 179 -----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTI 232 + + + R E L +G R S+ V + ++ K Sbjct: 127 ALIEAVPVGEDARPLDLRDRALVELLYSTGARISEVLDLNVDDIDRTQDTVLLRGKGDHE 186 Query: 233 ITVELPDGFMKLLAMTPIGKETF----------------FINNDKQKMNATQFSIWFKAK 276 V + + + + F+ ++M A Sbjct: 187 RVVPVGTPALAAVDAYLVRARPTLAARGSGRAGSDGAALFLTASGRRMRRQSGFNVVAAA 246 Query: 277 ATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 KAG+ S H +R AT GA + G V + Y K Sbjct: 247 GEKAGLGKVSPHALRHSFATHLLAGGADIRVVQELLGHSHVVTTQIYAKV 296 >gi|91790630|ref|YP_551582.1| phage integrase [Polaromonas sp. JS666] gi|91699855|gb|ABE46684.1| phage integrase [Polaromonas sp. JS666] Length = 291 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 32/270 (11%), Positives = 79/270 (29%), Gaps = 23/270 (8%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130 L L ++ S+ ++ T + +R +P Sbjct: 11 LRQRMLDDMRLRKLEDKTQSSYIRAVRKLAGFL-RRSPDTATVEDLRRFQLHLVDQGTSP 69 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 + +T ++ F+ + + + ++ + + + +++ + + Sbjct: 70 ITLNATITGLKFFFEVTLERADLM----ARMQSVRVPQKLPVVLSPQEVAR-LIAATANL 124 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMT 248 + + A +GLR S+ V + + +++ K L ++ L Sbjct: 125 KHQTALSVAYGAGLRASEVIALKVGDIDSQRMTLRVEQGKGRKDRYAMLAPVLLQRLRAW 184 Query: 249 PIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATI 296 + Q + Q + A A A ++K H +R AT Sbjct: 185 WRVGHAQGKMLPGGWLFPGLDPVQPLTTRQLNRAIHAAAQDAKIDKRVSMHTLRHSFATH 244 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326 + + G K ++ YT A Sbjct: 245 LLEQKVDIRVIQVLLGHKKLETTSMYTHVA 274 >gi|330970858|gb|EGH70924.1| site-specific recombinase, phage integrase family protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 351 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 47/353 (13%), Positives = 106/353 (30%), Gaps = 30/353 (8%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 +T G RK + + + YI + TL+ Sbjct: 6 KTPSGTWKALIRKTGWPTV-AKTFRTKRDAEDWSRRTEDEMVRGVYIQRNGSERMTLEVA 64 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS--- 131 ++ Y + ++ S ++I G + ++ + I + + R + P Sbjct: 65 LARYLSDITPTK-KLATQRGEISKDKKLIEHLGKYSLAALSAEIIANYRDKRLNEPGRDG 123 Query: 132 -----SAIQFLTSMRVLFKWAVRQEY--VAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + L + L+ A+++ + NP L++ +P R + E+ + + Sbjct: 124 NINNNTVRLELALLSHLYTVAIQEWGLGMTFNPMLNIRKPSPGGGRDRRLSPEEERDLLA 183 Query: 185 FWSEGSQPRLAFEFL--LYSGLRCSDSCRAGVQHLQ----------NNIFSIKTQKTGTI 232 + S P L + L +G+R S+ + S +T Sbjct: 184 AVNRHSNPMLGWIVRIALETGMRSSEISSLRRPQVDLAKRVIRLSDTKNDSSRTVPLSKR 243 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRK 291 T + F + K F+ + K + H +R Sbjct: 244 ATEAFQAAMNNPVRPIDCNLVFFGESGKDGKRRPYTFTKIWGQLKKKLDLPDFKFHDLRH 303 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 + + + G + E+ A G +++ + YT + R+ + Sbjct: 304 EAVSRLVEGGLSDQEVSAISGHRSMQMLKRYTHL-----RAEELVSRLDEMKG 351 >gi|270158947|ref|ZP_06187603.1| phage integrase family protein [Legionella longbeachae D-4968] gi|289166278|ref|YP_003456416.1| phage integrase [Legionella longbeachae NSW150] gi|269987286|gb|EEZ93541.1| phage integrase family protein [Legionella longbeachae D-4968] gi|288859451|emb|CBJ13391.1| putative phage integrase [Legionella longbeachae NSW150] Length = 409 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 45/344 (13%), Positives = 102/344 (29%), Gaps = 34/344 (9%) Query: 28 GHGRRIRLPYPHESTFIPAYMSA------LTGSTPKREYINSPRKKPTTLKWLISEYRKS 81 G +R+ L T A + + + TL+ ++++Y K+ Sbjct: 57 GKVKRVTLGKYGNLTVEEGRKQAKSLLGSVARGDDPIAEKKTKKVHAMTLQQVLNDYLKA 116 Query: 82 AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI--RSGVESRKHTPSSAIQFLTS 139 L + ++ +++ D IT + I R + ++ + A + Sbjct: 117 R--KDLKPRTLNDYQCVLHEVVPDWLDKPLVNITREMIAKRHTKHGQANSKARANNAMRV 174 Query: 140 MRVLFKWAVRQE---------------YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 +R +F +A+ + Y++ K+ Sbjct: 175 LRAIFNYAMYEYQDGNGHPIITINPVKYLSHTRAWYRVDRKQTVIKPHQLADWYKAVIVL 234 Query: 185 FWSEGSQPRLAFEFL----LYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239 ++ + L + L++G+R ++ + + +I I Sbjct: 235 VETDNYRNALLWHDYFLLLLFTGMRKMEAASLRWEDIDLKSKTITLQDTKNHEIHTLPMS 294 Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQF--SIWFKAKATKAGVNKSAHGVRKFSATIS 297 F+ L +T + + +GV + H +R+ ATI+ Sbjct: 295 DFVYELMEHRSRNKTSEFVFPAESKTGYIYEPKKAVNRVVELSGVLFTLHDLRRTFATIA 354 Query: 298 ADAGATAHELMATYGWK-TVDQAETYT-KGADRIRLGIKNSRRI 339 A+ L K D Y K +R+R ++ Sbjct: 355 DSLDLPAYALKRLLNHKMNNDVTAGYIMKDVERLRKPMQQVANF 398 >gi|47091895|ref|ZP_00229689.1| site-specific recombinase, phage integrase family, putative [Listeria monocytogenes str. 4b H7858] gi|47019611|gb|EAL10350.1| site-specific recombinase, phage integrase family, putative [Listeria monocytogenes str. 4b H7858] Length = 330 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 41/316 (12%), Positives = 95/316 (30%), Gaps = 29/316 (9%) Query: 49 SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSG 107 ++ T Y+K + ++ + S ++ I+ Sbjct: 8 RKEALEWERQFLQQKTADLTMTFLSFWEIYKKDMKNR-IRESTWETKISIVERKILPYFK 66 Query: 108 DFDYRKITTKHIRSGVESR---------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158 + +I K I ++P + +F AVR + NP Sbjct: 67 NRKMSEIAPKDIIQWQNEMISYRDKNGKAYSPVYLKTLHNQLSAMFNHAVRFYELKSNPA 126 Query: 159 LSVERPKRKT-EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217 ++ + WTKE+ Q+F + + AFE L + G+R + Sbjct: 127 RKAGNMGKEKSVEMLFWTKEEYQKFSDSMMDKAISFYAFEILYWCGIRLGELLALTASDF 186 Query: 218 QNNIFSIKTQKTGTI----------------ITVELPDGFMKLLAMTPIGKETFFINNDK 261 N ++ K+ +++P+ + + + + Sbjct: 187 DFNKGTLSISKSCQRLKGMDVITEPKTPKSNRIIQMPEFLGEEIQEYIQSIYKWEPDERL 246 Query: 262 QKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320 + + A + + + H +R ++ D+G +A + G +++D Sbjct: 247 FPITKSYLHSEMTRGAKEQKIKRIRIHDLRHSHVSLLIDSGFSAVAIADRLGHESIDVTY 306 Query: 321 TYTKGADRIRLGIKNS 336 Y ++ I N Sbjct: 307 RYAHLFPTKQMEIANM 322 >gi|322614413|gb|EFY11344.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322621522|gb|EFY18375.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624383|gb|EFY21216.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626580|gb|EFY23385.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633558|gb|EFY30300.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638399|gb|EFY35097.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322647302|gb|EFY43798.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649302|gb|EFY45739.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655977|gb|EFY52277.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322661373|gb|EFY57598.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662570|gb|EFY58778.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666944|gb|EFY63119.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322671314|gb|EFY67437.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677679|gb|EFY73742.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681494|gb|EFY77524.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322683894|gb|EFY79904.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195464|gb|EFZ80642.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197494|gb|EFZ82631.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203015|gb|EFZ88047.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323205255|gb|EFZ90230.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210594|gb|EFZ95478.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218124|gb|EGA02836.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221609|gb|EGA06022.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227630|gb|EGA11785.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230888|gb|EGA15006.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234760|gb|EGA18846.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238800|gb|EGA22850.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323241499|gb|EGA25530.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248355|gb|EGA32291.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252880|gb|EGA36714.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256999|gb|EGA40708.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260527|gb|EGA44138.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264415|gb|EGA47921.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269549|gb|EGA53002.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 339 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 49/340 (14%), Positives = 95/340 (27%), Gaps = 47/340 (13%) Query: 11 VTKERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 +T + +GK + Y G+R+R A+ + K+ ++ + Sbjct: 1 MTIRKQPNGKWLCECYPNGRDGKRVR-KQFATKGEAVAFENFTMDEVNKKPWLGEKEDRR 59 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESY---FDQIIRKSGDFDYRKITTKHIRSGVES 125 L +I ++ SL + + I GD ++T E+ Sbjct: 60 H-LSEVIEQW------HSLYGQTLADPKRLMAKLRIICTGLGDPIASELTAGDFTKYREA 112 Query: 126 R--------------KHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEG 170 R P + ++ +F + + A NP + K Sbjct: 113 RLKGEVRNEDGAFMSPVKPRTVNLEQRNLSSVFGTLKKLGHWSAPNPLAGLPTFKIAEGE 172 Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFE--FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228 + T E++++ ++ P L L +G R S++ L + K Sbjct: 173 LAFLTPEEIKRLLGACADSQSPSLLMIAKVCLATGARWSEAENLQGHQLSKYRITYTKTK 232 Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---- 284 TV + L T F+ +AG+ Sbjct: 233 GKKNRTVPISQDLYAELPKNRGKLFTPC-------------RKAFERAVKRAGIELPEGQ 279 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R A+ G L G + Y+ Sbjct: 280 CTHVLRHTFASHFMMNGGNILVLRDILGHSDIKMTMVYSH 319 >gi|282851276|ref|ZP_06260641.1| site-specific recombinase, phage integrase family [Lactobacillus gasseri 224-1] gi|282557244|gb|EFB62841.1| site-specific recombinase, phage integrase family [Lactobacillus gasseri 224-1] Length = 374 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 51/355 (14%), Positives = 110/355 (30%), Gaps = 40/355 (11%) Query: 11 VTKERTRHGKIIYYFR-----KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65 +TK + GK+ Y F+ G+R+ + T+ A +A+ + + Sbjct: 9 ITKYTLKSGKVRYRFKTYLGMDDSGKRVMVTRQGFKTYQEA--NAVYKKLRAKGTQGYTK 66 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVE 124 K T++ + + + + ++ + + + + + G+ KI ++ + Sbjct: 67 PKQATVEQVWTLWFDTYK-KHAKESTAHKMQQTYDNHVKKDFGNVYIDKIKPAKVQKWIN 125 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ---- 180 + + L +A+ Y INP V P + + R TK + Sbjct: 126 NLSTVLVRYRPAFNLLNNLINYAIVLGYANINPTKKVIVPAKTSVKKRRDTKNNYYDSPE 185 Query: 181 ----QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-------- 228 + + + F+ L +GLR S++ + I K Sbjct: 186 QVREFLNAAKKDSEIAYMYFKLLSSTGLRKSEALALKWDDIDFEKNVIHVTKTINVGFNN 245 Query: 229 -----TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS------IWFKAKA 277 K L + + + K N + + Sbjct: 246 VELIAPPKTKESYRDVPLSKSLKADLMKYRSNIYDFVFCKANGDHLNLATPAHWLQRIYK 305 Query: 278 TKAGVNK-SAHGVRKFSATISAD--AGATAHELMATYGWKTVDQA-ETYTKGADR 328 + + + + HG R AT+ G T ++ G T+D YT + + Sbjct: 306 NNSNLKQITIHGFRHTFATLMLQPGTGNTPKDVQKILGHSTIDMTLNIYTHESKK 360 >gi|260893196|ref|YP_003239293.1| integrase family protein [Ammonifex degensii KC4] gi|260865337|gb|ACX52443.1| integrase family protein [Ammonifex degensii KC4] Length = 391 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 48/344 (13%), Positives = 107/344 (31%), Gaps = 47/344 (13%) Query: 11 VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 V + +GK +Y + G R ++ L + E +PR T Sbjct: 17 VYLGKDENGKKLYRSQTVRGTR---------QDAERALAELLVKAHRGELGRAPRG--LT 65 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--H 128 + L++ + ++ S N+ + + R G + ++T + + + Sbjct: 66 VAGLLNAWVEAHR-RSWRPNTLANKRTAARAWGRLIGHLEVERLTPADVELALARLAEEY 124 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 PS+A + +S R +WA +++ + +P V P+ +T+ I PWT E+ +F + + Sbjct: 125 APSTAKEVFSSFRQALRWARKRKLLHHDPTEGVPAPRGETQEITPWTGEEAARFLEYLEK 184 Query: 189 GSQ---PRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--------------FSIKTQKTGT 231 + F L +G+R + Q + + + Sbjct: 185 ARMRKAYKAFFRLALATGMRLGELQALRWQDVDLKRGEVCVRRTYSEAGKCFHEPKTKKA 244 Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI---------------WFKAK 276 + + L + + + + + Sbjct: 245 RRRIPIDPVTTAWLREWRKEQLEERLRAGEGWADREGLVFTTRKGTVVDRDDLLRALRRA 304 Query: 277 ATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 +AGV H +R A++ + G +V Sbjct: 305 CREAGVPGIRFHDLRHTHASLLLRQNVHPKVVQERLGHASVKTT 348 >gi|189499195|ref|YP_001958665.1| integrase family protein [Chlorobium phaeobacteroides BS1] gi|189494636|gb|ACE03184.1| integrase family protein [Chlorobium phaeobacteroides BS1] Length = 384 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 38/283 (13%), Positives = 83/283 (29%), Gaps = 20/283 (7%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVESR 126 K L Y K+ ++ S + R +R+I + Sbjct: 95 KALFLSYFKAEAEKKSKPGYPGNWGSTLKHLTRFVEKHRSVRVTFREIDKAFCEGFKDYL 154 Query: 127 KHTPSSAI----------QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + ++ + + A++ ++++P V RPK + T Sbjct: 155 RDEATTRTGKGLSSASQGAYYGKFKACLNKAIKDGILSVDPAKGVARPKIVSHKREYLTF 214 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITV 235 +++Q + F F +GLR SD + ++ + + Sbjct: 215 DELQAMAKAECRNPTLKRMFLFSCLTGLRFSDCHKLIWGEVEQYGDGWRIVFHQQKTKGL 274 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293 + D + + + SI + KAG+ + + H R Sbjct: 275 QYHDISQQARELMGEQGAADDRVFFAISKYSAYLSIVLREWVLKAGITKHLTFHSGRHTF 334 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 A + + G + L G + ++ Y D+ R + Sbjct: 335 AVLQLENGTDIYTLSKLLGHREIEVTAIYADILDKKRR--EAM 375 >gi|295099124|emb|CBK88213.1| Site-specific recombinase XerD [Eubacterium cylindroides T2-87] Length = 398 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 47/388 (12%), Positives = 95/388 (24%), Gaps = 70/388 (18%) Query: 1 MTPSLRLPPFVTKERTRHGKIIYYFRK--GHGRRIRLPYPHESTFIPAYMSALTGSTPKR 58 M P T+ G + Y R G+R+ L A + Sbjct: 1 MAKKKECIPN-YSSTTKKGVLYYRTRITDADGKRVDLYATTCEELYKKETEARRIIEELK 59 Query: 59 EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTK 117 R++ T+ ++ ++ + + + I++ GD +T+ Sbjct: 60 -----FRRENPTVAEYCEKWLL-MQSAKVSSATLKGYTCSVNNYIVKPLGDMYMSDVTSD 113 Query: 118 HIRSGVESRKHTPSSAIQFLTSM-RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 IR + +S + + + +F A R E + NP S+ + Sbjct: 114 DIRVALIPASQKSASVYNKVNMLFKCIFYSAERSELLDYNPSASISAKGGTPAKDKDALT 173 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 ++ + P L LYSGLR + + + + T Sbjct: 174 DEQVKVLLDTVRELPPYLFIMIGLYSGLRREEILGLQWDCVFLDTRTPYIAVRRAWRTEH 233 Query: 237 LPDGFMKLLAMTPIGKETFFINN---------------------DKQKMNATQFSIWFKA 275 +L ++ + + +QF +K Sbjct: 234 NRPVVSTVLKTPAAQRDIPIPKCLVDCLLETKKSSISDYVIADSKGEPLAYSQFQRLWKY 293 Query: 276 KATKA-------------------------------------GVNKSAHGVRKFSATISA 298 ++ + H +R T Sbjct: 294 VTVRSTKERTCYKVINGQRIKYTKKPALGTHQKNNPSIVYTMDFEVTPHQLRHTYITNLL 353 Query: 299 DAGATAHELMATYGWKTVDQAE-TYTKG 325 AG + G + Y K Sbjct: 354 YAGVDPKTVQYLAGHENSKTTMDIYAKV 381 >gi|291612849|ref|YP_003523006.1| integron integrase [Sideroxydans lithotrophicus ES-1] gi|291582961|gb|ADE10619.1| integron integrase [Sideroxydans lithotrophicus ES-1] Length = 330 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 26/303 (8%), Positives = 79/303 (26%), Gaps = 48/303 (15%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH----T 129 L+ + R ++ + + + + I G + + + + + + Sbjct: 15 LLDQVRDKIRVKHYSIRTETQYVQWIKRFILFHGKRHPKDMGAAEVEAFLTHLAVEGNVS 74 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP------------------------- 164 S+ Q L+++ L++ + E ++ + ++P Sbjct: 75 ASTQNQALSALLFLYREVLGMELPWLDDVVRAKKPQRLPSVLNREEVSLVLERMEGTYGL 134 Query: 165 ------------KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212 ++ +G++ R+ + Sbjct: 135 MARLLYGTGMRLMECCRLRVKDIDFRQREILIRDGKGAKDRVTMLPETLIKPLQEYLLKR 194 Query: 213 GVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF--- 269 + + + + P+ + + ++ ++ + Sbjct: 195 RRLFEDDLSKGMTEVYLPDALARKYPNAAQEWIWQYVFPSGSYSVDPRSGRERRHHIDEK 254 Query: 270 --SIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 K T +G+ K + H +R AT + G + G V YT Sbjct: 255 LLQRAMKKAVTASGITKFATPHTLRHSFATHLLEGGYDIRTVQELLGHSDVSTTMIYTHV 314 Query: 326 ADR 328 ++ Sbjct: 315 LNK 317 >gi|108804268|ref|YP_644205.1| phage integrase [Rubrobacter xylanophilus DSM 9941] gi|108765511|gb|ABG04393.1| phage integrase [Rubrobacter xylanophilus DSM 9941] Length = 309 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 36/299 (12%), Positives = 90/299 (30%), Gaps = 36/299 (12%) Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF----ESYFDQIIRKSGDFDYRKIT 115 +SP +P + L+S Y ++ + ++ ++ ++ + + G + ++T Sbjct: 4 RQSSPPARPGDEERLLSLYLRTLS----SPQTQKTYNTEIRAFLSYLRERLG-KNLGEVT 58 Query: 116 TKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 + I E + P++A + LT++R + + +++ + + Sbjct: 59 AEDISLYREHVTGAYAPATAAKKLTALRRFLTFTY-MGGITRVNPEALKFFAKSPRVRQD 117 Query: 174 WTKEDMQQFKSFWSE------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS---I 224 + + + + + + GLR ++ V + + + Sbjct: 118 PSYNILTEEELSRMLSAARADNPRDHALLAVMAGCGLREAEVVGLRVGDFREHGDAVLLR 177 Query: 225 KTQKTGTIITVELPDGFMKLLAMTP-------------IGKETFFINNDKQKMNATQFSI 271 K + V + +L+ + + Sbjct: 178 VRGKGDKVRNVPVSPELWRLVQRYVLSSGRSLSSQTDARKPLFPSRVGKDRPLTTRSIQN 237 Query: 272 WFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 K AG+NK S H +R T A A + G Y + A+ Sbjct: 238 IVKKYVRAAGINKPISPHSIRHTVGTNMAMNQAPLLVIQQFLGHSDPKTTMRYIRRAEE 296 >gi|237729900|ref|ZP_04560381.1| phage integrase [Citrobacter sp. 30_2] gi|226908506|gb|EEH94424.1| phage integrase [Citrobacter sp. 30_2] Length = 398 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 56/326 (17%), Positives = 111/326 (34%), Gaps = 15/326 (4%) Query: 20 KIIYYFRKGH---GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76 + ++ RK G + + T R + R P TL+ S Sbjct: 55 RYLWQGRKRAISIGHWPEIDVTTARKIATEMKRQIATGTDPRYERDKCRAIP-TLQEAFS 113 Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAI 134 +Y + + + D I G+ +IT +H+ S T P++ Sbjct: 114 QYY-FPWAKLHKKSWNKDEQRFRDHIAPVMGNLLLNEITPRHVTHLQSSLCETCQPATNN 172 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-- 192 + + ++ L +W++R E VA NP + + R +++ ++++ SE + Sbjct: 173 RVIALLKALLRWSLRHEMVATNPAANTPLLRENNARQRYFSETEIRRIFEAASEDNSRVA 232 Query: 193 --RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250 + L + LQ + K GT V L D +KL+A P Sbjct: 233 SIYIRLLLLTGLRRDELRLAKWAHYSLQQGTLWLPETKNGTGRLVHLNDWAIKLIAELPR 292 Query: 251 GKETFFINNDKQKMNA-TQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGATAHE 306 ++ K + F+ +AG+ H R A + G T ++ Sbjct: 293 FGGNIWMFGGKIPGKPVCNVTKAFRRIIRRAGIYDDEVCIHTCRHSVAALIVSRGGTLYD 352 Query: 307 LMATYGWKTVDQAETYTKGADRIRLG 332 + A G +++ ++ Y + Sbjct: 353 VQAQLGHRSIQSSQRYAHLHPQRLKA 378 >gi|28199084|ref|NP_779398.1| phage-related integrase [Xylella fastidiosa Temecula1] gi|182681811|ref|YP_001829971.1| integrase family protein [Xylella fastidiosa M23] gi|28057182|gb|AAO29047.1| phage-related integrase [Xylella fastidiosa Temecula1] gi|182631921|gb|ACB92697.1| integrase family protein [Xylella fastidiosa M23] Length = 339 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 56/329 (17%), Positives = 101/329 (30%), Gaps = 23/329 (6%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 P + G + YY+ G R P + + L + Sbjct: 12 PRFRVRPQKSGVVYYYYDHGGKPRKETPLGRDYGLAIKRWAELEHAQITPAI-------A 64 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR 126 T + + YR A N++ Y + +++ D + I +IR ++ R Sbjct: 65 VTFRHVAERYRAEVIPTK-AYNTQRMHHVYLNYLLQFFDDPPAPFESIKPVNIRQYLDWR 123 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 SA + + L+ W + + +R E R +D + Sbjct: 124 PFK-VSANREVALFSHLWNW--ARSKGITDLPNPCGGIRRNKERGRDVYIDDTTYRAVYQ 180 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246 + R A + +G R SD +H+ N I KTG + + + L+ Sbjct: 181 AADQTLRDAMDLAYLTGQRVSDVVSMDERHIVNGALEICQAKTGVKLAIAITGELSVLIK 240 Query: 247 MTPIGKETFFINNDKQKM-------NATQFSIWFKAKATKAGVNK---SAHGVRKFSATI 296 K + + + + + F AGV K +R +AT Sbjct: 241 RIFDRKRGMKLRSTRLIVDAKGLELSRIGLRYRFDKARAAAGVAKEVFQFRDLRAKAATD 300 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKG 325 AD + A G +V E Y + Sbjct: 301 KADLAGDMRQAQAQLGHASVTMTEHYVRK 329 >gi|322384294|ref|ZP_08058003.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321150942|gb|EFX44368.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 413 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 50/395 (12%), Positives = 119/395 (30%), Gaps = 69/395 (17%) Query: 17 RHGKIIYYFRKG-----HGRRIRLPYP----------HESTFIPAYMSALTGSTPKREYI 61 + G+ + G R RL + L + Sbjct: 8 KRGENTWRLTIDLGYNQDGSRNRLRRKVVVEDKTLLKTKKKLREHLEDELAKFKQEVLSG 67 Query: 62 NSPRKKPTTLKWLIS-EY--RKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTK 117 + + TLK I E+ + ++ +L+ + ++ + + I+ G I T Sbjct: 68 EYIKPEKMTLKQFIENEWEPKYASKPKNLSPLTYKTYMHHIENHIMPTFGHKFLGDIKTL 127 Query: 118 HIRSGVESRKH------------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165 HI + ++ +P + ++ + A + + NP + V++PK Sbjct: 128 HIVTFIDDLGKPGSRKDNKGDTLSPGTIQFIYRVLKNILTRATEWQLIKSNPTVGVKKPK 187 Query: 166 RKTEGIRPWTKEDMQQFKSF-WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 + + + +++ ++ + E + RL + G R + + +I Sbjct: 188 VEQTQLDFYDEKEAREVIKALYQEPRRWRLLILGAMLGGCRRGELVGLEWSDVDFENKTI 247 Query: 225 KTQKTG-----------------TIITVELPDGFMKLLAMTPIGK--------------- 252 +K+ +I T+++P +M L Sbjct: 248 SIRKSISLTVDSRAIEKEPKSKSSIRTIDMPQWYMVELKEYEREWKKEKLSVGDKWIGGD 307 Query: 253 -ETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMAT 310 F + + S W+ + + + H +R SAT+ +AGA+ + Sbjct: 308 RRYVFHAGLGKPYFYSYPSEWWSKFIKRHDLKRVRFHDLRHSSATLLIEAGASMKAIQQR 367 Query: 311 YGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVVD 344 G Y ++ + + + Sbjct: 368 LGHSKHQTTADVYAHVT--KKVSRETAEKFDKFAP 400 >gi|319654649|ref|ZP_08008730.1| hypothetical protein HMPREF1013_05352 [Bacillus sp. 2_A_57_CT2] gi|317393715|gb|EFV74472.1| hypothetical protein HMPREF1013_05352 [Bacillus sp. 2_A_57_CT2] Length = 406 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 48/365 (13%), Positives = 112/365 (30%), Gaps = 56/365 (15%) Query: 27 KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS 86 G ++I + +A+ RK P + + E+ + Sbjct: 29 TGKRQQISRRADTKKEAEKKVTAAIRKLQEDGIDEKKVRKLP--FEDVAWEWLSTYAKSK 86 Query: 87 LAVNSRISFESYFDQIIRKSGDFDYRKITTKH---IRSGVESRKHTPSSAIQFLTSMRVL 143 + ++ E ++R + K+T + I + ++ +++ ++ + ++ Sbjct: 87 VKSSTVRVREKEIKILLRYIAKVNIDKVTPRMHQKILNDLDDKEYAKTTIEGVHVTANMI 146 Query: 144 FKWAVRQEYVAINPCLSVERP---------KRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194 FK+A++++ NPC P + KT ++++ +F Sbjct: 147 FKYAIKEKMRKDNPCTGSVIPVKKLTVEDIENKTIEEEYLERDELFEFLEAVKRYGLEFD 206 Query: 195 AFEFLL--YSGLRCSDSCRAGVQHLQNNIFSIK-------------------TQKTGTII 233 F L +SG+R + C + I+ + G+I Sbjct: 207 LERFYLLAFSGMRSGELCALKWSDINWETNEIRITKTLYNPDNNMKKYELTPPKTPGSIR 266 Query: 234 TVELPDGFMKLLAMT-----------------PIGKETFFINNDKQKMNATQFSIWFKAK 276 T ++ D + LL + F + + + Sbjct: 267 TFDIDDDIIDLLKVHKKRQNKIKLANRLKYPDYHDANFIFCRENGYPFIQKNIIVRMERI 326 Query: 277 ATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKGADR-IRLG 332 K + K + H R ++ A+AG +M G + YT D+ + Sbjct: 327 LKKTSIEKHATPHIFRHTHISMMAEAGIDLPTIMKRVGHDDMKTTMRVYTHVTDKMKKNA 386 Query: 333 IKNSR 337 + + Sbjct: 387 AERIK 391 >gi|254776421|ref|ZP_05217937.1| phage integrase family protein [Mycobacterium avium subsp. avium ATCC 25291] Length = 364 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 54/364 (14%), Positives = 116/364 (31%), Gaps = 38/364 (10%) Query: 10 FVTKERTRHGKIIY---YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 F+ + G +Y Y G G R + + + + P+R + Sbjct: 3 FIRARQHNDGTTVYGVTYRLGGRGSRQSSVTFPDEKQAKRFCALVDSHGPERALELAGIA 62 Query: 67 KPT------TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHI 119 T+ + + S + + ++ Y I G K+T + I Sbjct: 63 DTQRAVSALTVAEWLDRHIGSL--TGVEKKTISEYQRYATRDIGPPLGAIPLGKLTREDI 120 Query: 120 RSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 V + + K AV ++A NPC + P+ + + + T+ Sbjct: 121 AEWVNEMFEAGAAGGTIENKHGFLSGALKRAVEDGHLAANPCQGIRLPRTEEQEMVCLTR 180 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---- 232 ++ Q K+ +S +P + EFL+ SG R S++ + +++ + Sbjct: 181 DEFQTLKAAFSAHYRPLV--EFLVASGCRASEALALRPSDVDREASTVRIARAWKRAGSG 238 Query: 233 ---------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS-IWFKAKATKA-- 280 +V + +L G E F + + + + KA Sbjct: 239 YELGPPKTKRSVRTINVPKSVLDQLDYGGEWLFTGTNGGPVRIYSWRSNVWYKSLAKAQK 298 Query: 281 -GVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLGIKN 335 G+ K H +R A+ GA + G +++ + Y + + + Sbjct: 299 NGLAKRPRVHDLRHTCASWMIQNGAPLPLIRDHLGHESIKTTVDCYGHLDRNDHVVAAEA 358 Query: 336 SRRI 339 ++ Sbjct: 359 IGKM 362 >gi|327474308|gb|EGF19715.1| integrase/recombinase XerD [Streptococcus sanguinis SK408] Length = 298 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 35/281 (12%), Positives = 85/281 (30%), Gaps = 37/281 (13%) Query: 74 LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP-- 130 LIS Y L+ ++ ++++ Q ++ S +E + Sbjct: 5 LISTYLDFCKTHKRLSSHTIRAYKNDLMQFYNS---------DYDNVESYIEQLTQSNIK 55 Query: 131 -SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER-PKRKTEGIRPWTKEDMQQFK----- 183 ++ + + M+V + + Q + NP + + + + + ++ Sbjct: 56 TNTLRRKIACMKVFYNYLKYQNIIEENPFNQLRFQFRTEKVLPKTIPYDILKSIFIYLEQ 115 Query: 184 --------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTII 233 + L LL +G+R S+ C ++ + N I + I Sbjct: 116 KVIVSKTDYQKQHAERNLLIISLLLSTGIRISELCHIHLKDINLSNKTLQIIGKGKKERI 175 Query: 234 TVELPDGFMKLLAMTPIGKET------FFINNDKQKMNATQFSIWFKAKATKAGVNKS-- 285 LL F + + ++ + K + +++ Sbjct: 176 LFLGDQTTFNLLETYINKTRNESNDFLFPGKHSLKPLSEQSVRLVIKRIVEQNNFSRTIT 235 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 H R AT+ D+ + G ++ + YT + Sbjct: 236 PHMFRHSFATMLLDSDVDIRYIQQILGHSSISITQIYTHVS 276 >gi|319939540|ref|ZP_08013900.1| integrase [Streptococcus anginosus 1_2_62CV] gi|319811526|gb|EFW07821.1| integrase [Streptococcus anginosus 1_2_62CV] Length = 381 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 43/371 (11%), Positives = 101/371 (27%), Gaps = 48/371 (12%) Query: 11 VTKERTRHGKIIYY------FRKGHGRRIRLPYPH-ESTFIPAYMSALTGSTPKREYINS 63 +T+ + ++G +Y + G++++ + A Sbjct: 3 ITELKKKNGTTVYRSSVYLGVDQITGKKVKTSVTGRTRKEVKAKAQQAQIDFKLNGSTVK 62 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSG 122 + T + L + S + + + + + +I G KIT +I+ Sbjct: 63 KEMQVRTYQELADLWLSSYQLT-VKPQTFRATQRMLYNHLIPAFGTMKLNKITVYYIQDF 121 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT------- 175 + + R + ++ V + + NP V PK + Sbjct: 122 INDLSKELVHYSVVHSINRRVLQYGVSLQLLPFNPARDVILPKVLKRENKVIKFIAPENI 181 Query: 176 ---KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 + M+ + + + LL +G R + + +I K Sbjct: 182 KALMDYMESLSNQKYGYYLDYVLYSVLLATGCRFGEVVALEWSDIDLKEKTISITKNYNR 241 Query: 233 I--------------------------TVELPDGFMKLLAMTPIGKETFFINNDKQKMNA 266 + + L + F K+ N Sbjct: 242 LLKLIGTPKSKAGVRVISIDKKTVNMLRLYKNRQRQLFLEVDSQAPAVVFATPTKEYQNM 301 Query: 267 TQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324 + + + + H R A++ +AG + EL G T+ Y+ Sbjct: 302 ATRQESLDRRLKEINCPRFTFHAFRHTHASLLLNAGISYKELQYRLGHATLATTMDIYSH 361 Query: 325 GA-DRIRLGIK 334 + D+ + + Sbjct: 362 LSKDKEKEAVS 372 >gi|313646796|gb|EFS11254.1| integrase [Shigella flexneri 2a str. 2457T] Length = 371 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 54/376 (14%), Positives = 108/376 (28%), Gaps = 61/376 (16%) Query: 17 RHGK-IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75 R G+ F +G+R + A T + Sbjct: 5 RRGEIWYASFTLPNGKRFKQSL-GTKDKRQATELHDKLKAEAWRVSKLGEIPDITFEEAC 63 Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP----- 130 + + S +S ++ R IT I S ++ + Sbjct: 64 VRWLEEKAHKK----SLDDDKSRIGFWLQHFAGMQLRDITESKIYSAMQKMTNRRHEENW 119 Query: 131 ------------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 ++ L+ ++ L + A +E+ ++ ++ P+ Sbjct: 120 RLRAEACRKKGKPVPEYTPKPASVATKATHLSFIKALLR-AAEREWKMLDKAPIIKVPQP 178 Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IF 222 K + IR + Q+ E + EF L +GLR S+ Q + Sbjct: 179 KNKRIRWLEPHEAQRLIDECPE--PLKSVVEFALATGLRRSNIINLEWQQIDMQRRVAWI 236 Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------------FS 270 + + K+ I V L D ++L + + + Sbjct: 237 NPEESKSNRAIGVALNDTACRVLKKQIGNHHRWVFVYKESCTKPDGTKAPTVRKMRYDAN 296 Query: 271 IWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +KA +AG++ H +R A+ AG L GW++++ Y Sbjct: 297 TAWKAALRRAGIDDFRFHDLRHTWASWLVQAGVPLSVLQEMGGWESIEMVRRYAH----- 351 Query: 330 RLGIKNSRRISSVVDS 345 L + + +DS Sbjct: 352 -LAPNHLTEHARQIDS 366 >gi|310826662|ref|YP_003959019.1| integrase [Eubacterium limosum KIST612] gi|308738396|gb|ADO36056.1| integrase [Eubacterium limosum KIST612] Length = 412 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 45/360 (12%), Positives = 118/360 (32%), Gaps = 57/360 (15%) Query: 24 YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83 + + +R F + I + + L+ ++++ +++ Sbjct: 63 RVLRKNRKRKNSSGVITEKFQE-------------KEIINSEEYSAFLREWLTDWLENSK 109 Query: 84 WGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSG------VESRKHTPSSAIQF 136 + +S + S + +I GD+ +++T+ I++ + + ++ + Sbjct: 110 KTEIKKSSYTQYSSVVYNHLIPTIGDYRLQEVTSDVIQNYVKAKLSHHQKALSSTTVRRH 169 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS--FWSEGSQPRL 194 ++ + K AV+ + +NPC+ V P K + ++KE+ Q+ + + + Sbjct: 170 ISILSSALKQAVKLGIITVNPCIDVCIPAAKKRKMDVFSKEEYQKLEKTLYCDQDKVKAT 229 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-------------------------T 229 A L +G+R + + ++ + Sbjct: 230 AVLLALKTGVRLGELAALRWCDIDFEEKTMMVRDAVHRVNTSEEAGGKKTTMIFEGTKSY 289 Query: 230 GTIITVELPDGFMKLLAMTP----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285 + + + LL + E F++ ++ + +F AG+ K Sbjct: 290 YSERNIPMNHEIYTLLKGYEAILSVKGEFVFLSKKGSFIDPRVYQTYFADVLKNAGIKKR 349 Query: 286 -AHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTK-GADRIRLGIKNSRRISSV 342 H +R AT +A L G + Y ++ R+ ++S + Sbjct: 350 NFHILRHTFATRAASKNMQLAVLSRLLGHSNITVTLKSYIHPLTEQDRI---EMNKLSEI 406 >gi|241992534|gb|ACS73608.1| IntI1 [uncultured bacterium] Length = 315 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 34/302 (11%), Positives = 83/302 (27%), Gaps = 52/302 (17%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132 ++ + R+ + ++ + ++ + IR G + + + + + + S Sbjct: 16 VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 ++ L + + + + RP+ T +++ + + Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230 RL + L +G+R S+ + V+ L + +I ++ Sbjct: 134 RLFAQLLYGTGVRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193 Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265 + + A + + Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHTY 253 Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 F FK +AG+ K + H +R AT +G + G V YT Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313 Query: 324 KG 325 Sbjct: 314 HV 315 >gi|291615497|ref|YP_003522605.1| integrase family protein [Nitrosococcus halophilus Nc4] gi|291582559|gb|ADE17015.1| integrase family protein [Nitrosococcus halophilus Nc4] Length = 310 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 41/292 (14%), Positives = 90/292 (30%), Gaps = 37/292 (12%) Query: 77 EYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITT----KHIRSGVESRKHT 129 ++ H+ + + + S R D D+R+ T + + + R Sbjct: 14 DFLAHLHYTKGYSQGTCYGYNSDLGIWGRWLEEADKDWRQATHVDTEQFVAWQMRERGTK 73 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT-------------- 175 + + + +KWA++ V +P ++PKR Sbjct: 74 AHIVARRSSCLGSFYKWAMKNALVESDPIYLADKPKRPYRIPIWLEKEEQLAFQEAVRRV 133 Query: 176 -----KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----- 225 + + + + F +L SGLR S++ ++ ++ K Sbjct: 134 DDLPENIFGRPREHIKAIRRRYDFLFGLILNSGLRISEALAVKIRDVRIVNGVAKSVRVI 193 Query: 226 ---TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 ++ + F L F ++ + + +AG+ Sbjct: 194 GKGNRERLVPLPEAFGQVFGAWLQGRGGDDFVFAKAPGEKPPGPHAVRTYLRRLIERAGI 253 Query: 283 NK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 +K + H +R AT +AGA ++ G + + YT R+ Sbjct: 254 DKPVTPHKLRHTYATRLLEAGAELVDIQVLLGHVDLSTTQIYTH-VSEERMA 304 >gi|52079925|ref|YP_078716.1| lambda integrase-like, N-terminal,DNA breaking-rejoining enzyme, catalytic core [Bacillus licheniformis ATCC 14580] gi|52785296|ref|YP_091125.1| hypothetical protein BLi01531 [Bacillus licheniformis ATCC 14580] gi|52003136|gb|AAU23078.1| Hypothetical Lambda integrase-like, N-terminal,DNA breaking-rejoining enzyme, catalytic core [Bacillus licheniformis ATCC 14580] gi|52347798|gb|AAU40432.1| putative protein [Bacillus licheniformis ATCC 14580] Length = 352 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 47/314 (14%), Positives = 98/314 (31%), Gaps = 40/314 (12%) Query: 51 LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF- 109 P ++ + TL + + L + + + + + Sbjct: 4 RGRRRPAIKHSEKNTYESKTLSDVCKQICNVKMSEGLTKETIDRYRRVCESVEEFAEIKG 63 Query: 110 ---DYRKITTKHIRSGVESR--------------------KHTPSSAIQFLTSMRVLFKW 146 I + R + +P A L +MR +F + Sbjct: 64 LSTSVESIDVEFARQYMTYILHEKKTFKGHRYKPESVKTPGCSPKYANDHLKTMRAVFTF 123 Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYS 202 +++ ++ NP + + K+ I+ + E+M+Q ++ + + L+ S Sbjct: 124 CIKENMISENPFQKINKVKQPEPVIQILSVEEMKQLLKTPNKRKFSEFRDYVVMMCLINS 183 Query: 203 GLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPDGFMKLL------AMTPIGK 252 R + ++++ + I KT + L M+LL Sbjct: 184 MCRIGEIVTLEIENINFELSYIILEAQKTKTRKGRMIPLDKNTMQLLKKLLLRNTRFKPS 243 Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMAT 310 + FI + ++ F A +AG+NK H R +A++ AG L Sbjct: 244 KYVFITEEGTRLTTDNFRKRLADYAHQAGINKRVHPHLFRHTAASMFLQAGGDLRHLQTI 303 Query: 311 YGWKTVDQAETYTK 324 G K + YT Sbjct: 304 IGHKDLRMVLRYTH 317 >gi|159904432|ref|YP_001548094.1| integrase family protein [Methanococcus maripaludis C6] gi|159885925|gb|ABX00862.1| integrase family protein [Methanococcus maripaludis C6] Length = 324 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 37/298 (12%), Positives = 90/298 (30%), Gaps = 32/298 (10%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGV---ESRK 127 I ++R+ + ++ ++ + + + Y T + R Sbjct: 26 YIMKFREEREFDNIKPSTIKNDITSLKVFLAFCEEIEKEPYSLTTHDFVIFFNMLNNRRN 85 Query: 128 HTPSSAIQFLTSMRVLFKW-------AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 T + ++ ++V ++ +E + E+ T + + + Sbjct: 86 CTVRTQNRYFNLLKVFYRLLKYDNFKEFERESIERKRFSKFEKKHYDTINFDTYNRIIKE 145 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELP 238 S + L L +G R S++ + F I+ KT TV + Sbjct: 146 IILSNSRTRLRDALIVRVLWETGCRRSEALNIRYKDCDFEKGRFRIRDTKTYEERTVVIA 205 Query: 239 DGFMKLLAMT---------PIGKETFFINNDKQKMNATQFSIWFKAKATKA--------G 281 +++L + + +++ + FK K G Sbjct: 206 QETVEILRDYIKENIRRDSNDYIFQNEMIQNGKRVKLDWITNVFKKAVRKLKEEGVIQEG 265 Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 H +R AT D G + G ++++ Y+ +R + N +++ Sbjct: 266 KRIVIHSLRHGRATDLLDKGVPIDVVKEILGHRSLETTLYYSHSKERKDGMLDNIQKL 323 >gi|320188610|gb|EFW63272.1| Integrase [Escherichia coli O157:H7 str. EC1212] Length = 333 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 47/329 (14%), Positives = 94/329 (28%), Gaps = 32/329 (9%) Query: 14 ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + GK + Y G+RIR + +Y L S E+ + + L Sbjct: 4 RKIPSGKWLCECYPYGASGKRIR-KQFATKSEALSYERRLMNSRVGDEFQDGSGPR---L 59 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----- 126 LI+ + + +L+ + + I + GD + + E R Sbjct: 60 SELIARWFEMYG-KTLSSG--AERKVKLEAICSRLGDPFASQFDKNMFATYRERRLSGEW 116 Query: 127 ------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 K + ++ + + + +F R + L+ R R+ E + D Sbjct: 117 NPKGKKKLSEATVNREQSYLHAVFAELKRLGEWSGENPLTGIRKFREEEKELAFLYVDEI 176 Query: 181 QFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237 + + S+ + + L +G R S++ + + K TV + Sbjct: 177 ERLLIACDESRNKDLGVVVRIGLATGARWSEAEGLKQSQVLPGRITFVKTKGKKNRTVPI 236 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATIS 297 +L + F K + + H +R A+ Sbjct: 237 SPQLQAMLPKKRGALFSPC---------YEAFDAAIKRAKIELLDGQLTHVLRHTFASHF 287 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGA 326 G L G + Y A Sbjct: 288 MMRGGNILVLQKILGHSDIKMTMRYAHFA 316 >gi|302387673|ref|YP_003823495.1| integrase family protein [Clostridium saccharolyticum WM1] gi|302198301|gb|ADL05872.1| integrase family protein [Clostridium saccharolyticum WM1] Length = 339 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 44/269 (16%), Positives = 85/269 (31%), Gaps = 23/269 (8%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTP 130 + + S + N+ + + +++ G IT +R E Sbjct: 57 VKMFVASKKAVNRQENTLKQYTTEICKMLDFLG-KRIEDITAMDLRYYYGVMREQHGIKM 115 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 ++ L + + + +E V NP V K +P+++E+M+ + + Sbjct: 116 TTMQTRLHYLSSFWDFLTTEELVTSNPVKRVGILKLAKTIKKPFSQEEMEALRVNCTV-L 174 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMTP 249 + R EFL +G+R S+ V ++ I K V L D L Sbjct: 175 RDRALMEFLYSTGVRVSELALLNVCDIEMGRQELIVFGKGSKERKVYLTDNARFYLKRYL 234 Query: 250 IGKETFFIN---------------NDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293 + ++ F+ +AGV K H R+ Sbjct: 235 KERMKEEGITEEELENKPLFATLDQPHARLTVAGIQYMFRQLGRRAGVKKVHPHRFRRTI 294 Query: 294 ATISADAGATAHELMATYGWKTVDQAETY 322 AT + G ++ G + +D Y Sbjct: 295 ATDLLNRGMPVEQVSKLLGHEKLDTTMIY 323 >gi|251778556|ref|ZP_04821476.1| putative site-specific recombinase/integrase [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082871|gb|EES48761.1| putative site-specific recombinase/integrase [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 291 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 35/283 (12%), Positives = 86/283 (30%), Gaps = 24/283 (8%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR---KITTKHIRSGVESRKHT 129 +I +++ S + + S+ I GD + ++ S + Sbjct: 3 QVIEDFKISLVEDGKSSKTIESYVGDIKAFIEFLGDKGAEFNGTLQRFYVVSYKNFLVES 62 Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM------- 179 ++ + + S+ L ++ V + + + + G + Sbjct: 63 NYEVATINKKINSIHALNRYLVATGAMKEIVVENSKDRIKIAYGSEKQVEVYSDKEVERI 122 Query: 180 -QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVEL 237 ++ + ++ LLY+G+R S+ C ++ + +SIK G V L Sbjct: 123 LFYIQNEEKVSKRNKVIVMLLLYTGVRVSELCSIKIKDIDFLNYSIKIYGKGGKFREVPL 182 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKM------NATQFSIWFKAKATKAGV--NKSAHGV 289 ++ ++ +++ + + + G+ H Sbjct: 183 KFDLADVIKEYIKDRDYNVKDSEYLVIGQRGALKRDAINTMLERLTKDIGMVNKLKPHTF 242 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAET-YTKGADRIRL 331 R T + G + G +VD T Y + +L Sbjct: 243 RHTFCTRLINRGVPISTVSKLAGHSSVDTTATFYINSSREEKL 285 >gi|307705945|ref|ZP_07642775.1| tyrosine recombinase xerD [Streptococcus mitis SK597] gi|307620500|gb|EFN99606.1| tyrosine recombinase xerD [Streptococcus mitis SK597] Length = 295 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 37/283 (13%), Positives = 88/283 (31%), Gaps = 41/283 (14%) Query: 74 LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVESRK 127 LIS Y L+ ++ ++++ Q + D+D ++T +I Sbjct: 5 LISTYLDYCKTHKRLSSHTIRAYKNDLMQF--YNSDYDNVESYIEQLTRSNI-------- 54 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER-PKRKTEGIRPWTKEDMQQFK--- 183 ++ + + M+V + + Q + NP + + + + + ++ Sbjct: 55 -KTNTLRRKIACMKVFYNYLKYQNIIEENPFNQLRFQFRTEKVLPKTIPYDILKSIFIYL 113 Query: 184 ----------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGT 231 + L LL +G+R S+ C ++ + N I + Sbjct: 114 EQKVIVSKTDYQKQHAERNLLIISLLLSTGIRISELCHIHLKDINLSNKTLHIIGKGKKE 173 Query: 232 IITVELPDGFMKLLAMTPIGKET------FFINNDKQKMNATQFSIWFKAKATKAGVNKS 285 I LL F + + ++ + K + +++ Sbjct: 174 RILFLGDQKTFNLLETYINKTRNESNDFLFPGKHSLKPLSEQSVRLVIKRIVEQNNFSRT 233 Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 H R AT+ D+ + G ++ + YT + Sbjct: 234 ITPHMFRHSFATMLLDSDVDIRYIQQILGHSSISITQIYTHVS 276 >gi|329729089|gb|EGG65500.1| site-specific recombinase, phage integrase family [Staphylococcus epidermidis VCU144] Length = 391 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 49/381 (12%), Positives = 107/381 (28%), Gaps = 57/381 (14%) Query: 18 HGKIIYYFRKGH----GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 Y G G+ + A A R + +T K Sbjct: 9 KNNWRYRISLGKNTETGKYEYISKTGFKRKSDAKHQAEMIERQLRN-GDYIAPSSSTFKQ 67 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPS 131 + ++ K + V+S + E I+ + I + V+ +++ + Sbjct: 68 VAEDWIKQY-ANDVKVSSVRAREKAIQHAIQHFNTKPIQTIKKHDYQRFVDDMSIQYSKN 126 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 + S ++FK+A + + + P ++RPK+K E ++F Sbjct: 127 YVDSIVASTNMIFKYAYDMKLIRVLPIEGIKRPKKKVSVEELEDSEIHKKFLEKDELFQF 186 Query: 192 PRLAFEFL------------LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239 +A Y+G+R + + +I KT Sbjct: 187 LEVAKNHHSPQNSFEVFTTLAYTGMRAGELLALKWSDIDFENNTISITKTYYNPNNNKKH 246 Query: 240 GFM-------------------------------KLLAMTPIGKETFFINNDKQKMNATQ 268 + + F + + + + Sbjct: 247 YQILTPKTESSIGKISVDPHVIQLLKDYKVNVQDTWKNELYVDNNFVFTDVNGYPLVIKK 306 Query: 269 FSIWFKAKATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324 S W +A K + + S H R + +AG E+ K ++ Y K Sbjct: 307 LSTWIQAIMKKTDITNKHISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMNIYAK 366 Query: 325 GADRIRLGIKNSRRISSVVDS 345 + + S++ S ++++ Sbjct: 367 ITNSYK--KDASQKFSKLMEN 385 >gi|254523064|ref|ZP_05135119.1| site-specific recombinase, phage integrase family [Stenotrophomonas sp. SKA14] gi|219720655|gb|EED39180.1| site-specific recombinase, phage integrase family [Stenotrophomonas sp. SKA14] Length = 329 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 89/302 (29%), Gaps = 12/302 (3%) Query: 26 RKGHGRRIRLPYPH-ESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHW 84 + G+R R SA + + L+ + + + Sbjct: 17 WRDGGKRFRPSIGRVSPREAEEIRSAREAEL---RHGVRIISRAPLLRDFLDVWLEWYKA 73 Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----KHTPSSAIQFLTSM 140 + +S I++ G + + + R K P + + + + Sbjct: 74 EH--PTTHGKAKSELRIILQNLGHRPIDTLRPIELEAYKTQRLVKDKMAPETVGKEVRRL 131 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200 + + V+ + + NP ++ P+ + + Q + + F+ Sbjct: 132 QAALRCGVQWKELDANPFEGIQAPRGVRSVAVRFYTKTAMQQLYAANAARAN--LWRFMA 189 Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND 260 ++G+R + +++ +++ + ++ T + + Sbjct: 190 HTGIRRCELMHLRHENVVAGRLLVESDPDEDGDGRTKSGKWREVPLNTHAAAALVELPDP 249 Query: 261 KQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320 ++ S WFK AT AGV S H +R AG + G E Sbjct: 250 LVSVHKDTVSDWFKDDATAAGVGGSLHRLRHTFCAHMVMAGVPLRRVQILAGHADYATTE 309 Query: 321 TY 322 Y Sbjct: 310 KY 311 >gi|186896896|ref|YP_001874008.1| integrase family protein [Yersinia pseudotuberculosis PB1/+] gi|186699922|gb|ACC90551.1| integrase family protein [Yersinia pseudotuberculosis PB1/+] Length = 351 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 45/319 (14%), Positives = 87/319 (27%), Gaps = 42/319 (13%) Query: 28 GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87 G+RIR A+ + ++ + +L LIS + + Sbjct: 24 KRGKRIR-KKFATKGEALAFERHKLEEIQDKPWLGEEKD-KRSLNELISTWYNAHGI--- 78 Query: 88 AVNSRIS---FESYFDQIIRKSGDFDYRKITTKHIRSGVESR------------KHTPSS 132 + + + G + + + E R K P + Sbjct: 79 ---TLDDGLRRKDAMNHFYECMGKPLATEFSAQLFSQYREKRLKGELARSTRVTKVAPRT 135 Query: 133 AIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 L R +F R E+ +NP SV K + + T++ ++ + S Sbjct: 136 LNLELAYFRAMFNELERLGEWKLLNPIKSVRAFKTEESEMAFLTRDQIELLLDECKKSSI 195 Query: 192 PRLAFE--FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249 LA L +G R S++ + L + + K TV + L Sbjct: 196 ECLATVVKICLSTGARWSEAEGLKLSQLTEHKITFIKTKGRKNRTVPISKELYDELPKKG 255 Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA----HGVRKFSATISADAGATAH 305 + F+ ++ + H +R A+ G Sbjct: 256 KSGLFTACYAE------------FRRALKRSEIELPPGQLSHVLRHTFASHFMMKGGNIL 303 Query: 306 ELMATYGWKTVDQAETYTK 324 L G + Y+ Sbjct: 304 VLQRILGHTDIKMTMRYSH 322 >gi|168239055|ref|ZP_02664113.1| prophage DLP12 integrase (Prophage QSR' integrase) [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194734718|ref|YP_002113567.1| prophage DLP12 integrase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194710220|gb|ACF89441.1| prophage DLP12 integrase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288225|gb|EDY27610.1| prophage DLP12 integrase (Prophage QSR' integrase) [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 387 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 50/376 (13%), Positives = 108/376 (28%), Gaps = 61/376 (16%) Query: 17 RHGK-IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75 R G+ + G+RI+ + A T + Sbjct: 5 RRGEIWYASYSLPGGKRIKESL-GTADKRQAQELHDKRKAELWRVDKLGDFPEVTFEEAC 63 Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP----- 130 + + S + + + + IT I + V ++ Sbjct: 64 LRWLEEKADKK----SLDTDKGRMGFWLEHFEGVRIKDITEAKIYAAVSRMQNRKVKEIW 119 Query: 131 ------------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 S+ + L M+ + + A +++ + ++ P Sbjct: 120 QQKVESAKRKGKEAPVFEPKPVTTSTKAKHLALMKAILR-AAERDWKWLEKAPVIKIPSV 178 Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IF 222 + + +R E+ ++ E R +F L +GLR S+ Q + Sbjct: 179 RNKRVRWLEHEEAKRLIDECPE--PLRSVVKFALATGLRRSNIINLEWQQIDMQRRVAWV 236 Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------------FS 270 + + K+ I V L D K+L + + K+ + Sbjct: 237 NPEDSKSNRAIGVALNDTACKVLRGQIGKHHKWVFVHTKEGIRPDGSKTPTIRKMRVDDQ 296 Query: 271 IWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + A +AG+ + H +R A+ +G L GW++++ Y Sbjct: 297 RAWNAACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAH----- 351 Query: 330 RLGIKNSRRISSVVDS 345 L + + +DS Sbjct: 352 -LAPNHLTEHARQIDS 366 >gi|315149854|gb|EFT93870.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecalis TX0012] Length = 372 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 57/372 (15%), Positives = 112/372 (30%), Gaps = 42/372 (11%) Query: 11 VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 + K + G Y F G +T + + ++ +T Sbjct: 4 IKKYTKKDGSAAYMFNAYLGVDPLTGKSRRTTRRGFRTQKEARLELEVDTKGFVKQNYST 63 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT 129 K + + ++ + E F I+ + G+ K+T + V Sbjct: 64 FKDVYELWYAQY-VNTVKPITAGHTERMFRLHILPEFGNIKINKLTKLMCQKAVNKWS-K 121 Query: 130 PSSAIQFLTSMRV-LFKWAVRQEYVAINPCLSVERPKRKT------EGIRPWTKEDMQQF 182 SA L S+ + +AV Q+ + INP V PK+ + ++ Sbjct: 122 EYSAFYLLKSITQKMLHYAVAQDIIDINPMQYVVMPKKNRTNETKKKQFLELSELKDFLA 181 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII--------- 233 ++ + Q L F L ++GLR + + + + + KT T I Sbjct: 182 EARETLNFQDYLIFRVLAFTGLRKGELYALTWEDINISYKQLTVNKTLTRIGKEYTISTP 241 Query: 234 -------------------TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274 V + +LL K +K N + Sbjct: 242 KTKASNRTIGLDDTTVSELIVWKKNQKQELLKYGFKTKSNDKQLIFHRKNNTLHYPEHIN 301 Query: 275 AKAT-KAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLG 332 + + + S H R A++ ++GAT ++ G V+ YT Sbjct: 302 VLLSSEMKTSLSPHSFRHTHASLLFESGATIKDVQKRLGHTNVNTTMDIYTHVT--KSSE 359 Query: 333 IKNSRRISSVVD 344 ++S+ + Sbjct: 360 KNAIEKLSNYAN 371 >gi|313157316|gb|EFR56741.1| site-specific recombinase, phage integrase family [Alistipes sp. HGB5] Length = 409 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 37/296 (12%), Positives = 87/296 (29%), Gaps = 24/296 (8%) Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISF---ESYFDQIIR---KSGDFDYRKITTKHIRSG 122 T ++E+RK A ++ + + D ++++ I Sbjct: 111 QTFDEYLAEFRKRVG-KDRAYSTYEDYCLRRRRLAAFLEYEYHVKDIPFKELNRNFIEKF 169 Query: 123 VESRKHTPSSAIQFLTS----MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 V A +++ +R++ A + ++ ++P + K R + + Sbjct: 170 VVYLSTVKGLASGTISAGVKKLRLMTYTAYKNGWILVDPFAGF-HVRPKYAERRYLSASE 228 Query: 179 MQQFKSFWSEGSQ---PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 +Q + R F F ++GL +D + + + T Sbjct: 229 LQAVMDVELPNYRTGINRDVFVFCAFTGLSHADVVKLTHADIHTDYNRNHWIIDKRQKTG 288 Query: 236 ELPD----GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGV 289 +++ K ++ + A AG++ + H Sbjct: 289 TQFRVKLLPIAEIIYDRYKNLHLEGNKVFPIKRYYKTMNMSLRHVARLAGLSFNPTMHMA 348 Query: 290 RKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRI--RLGIKNSRRISSV 342 R AT G + G K + + Y + + R S ++ S+ Sbjct: 349 RHTFATTVTLAQGVPLETVSKMLGHKRITTTQIYAQITNDKIGRDMAALSEKLDSI 404 >gi|255020438|ref|ZP_05292504.1| site-specific recombinase, phage integrase family [Acidithiobacillus caldus ATCC 51756] gi|254970151|gb|EET27647.1| site-specific recombinase, phage integrase family [Acidithiobacillus caldus ATCC 51756] Length = 390 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 43/322 (13%), Positives = 82/322 (25%), Gaps = 17/322 (5%) Query: 18 HGK-IIYYFRKGHGRRIRLPYPHESTF--IPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 GK R+ + + + A + A + + + TLK Sbjct: 7 SGKFWRAQVRRRGYPSLSATFDTKREALQWAAQVEARLETQTPAQVYKKVEVRELTLKAA 66 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 Y + S A + S + + + + + SA Sbjct: 67 FERYTREI-LPSKAPRTSRREHSLIQWWSRSLWQAVPLPNLDGPQVAQAIRAMEKENRSA 125 Query: 134 IQF---LTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 L + L+ A ++ NP V +P+ R + + + + Sbjct: 126 NTIRLMLAVLSHLYTIARKEWGYVDLINPVELVRKPRLPEGRDRRFVGNEEDRLLEACAR 185 Query: 189 GSQPRL-AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK----TGTIITVELPDGFMK 243 + L + +R + + +IK T TV L + Sbjct: 186 KNPELADLVIVALETAMRQGEVFTLTWDRISFTDHTIKLPPELTKTRKGRTVPLSERAED 245 Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGA 302 L F AG+ + H +R + + + G Sbjct: 246 ALKRQRARHNGHGNRVWSYA-TQDGVRASFFKAVKVAGLEDFHFHDLRHEATSRFFERGL 304 Query: 303 TAHELMATYGWKTVDQAETYTK 324 A + G KT YT Sbjct: 305 NAAVVQGITGHKTAQMLARYTH 326 >gi|228477797|ref|ZP_04062425.1| site-specific recombinase, phage integrase family [Streptococcus salivarius SK126] gi|322374163|ref|ZP_08048696.1| site-specific recombinase, phage integrase family [Streptococcus sp. C150] gi|228250489|gb|EEK09703.1| site-specific recombinase, phage integrase family [Streptococcus salivarius SK126] gi|321276868|gb|EFX53940.1| site-specific recombinase, phage integrase family [Streptococcus sp. C150] Length = 377 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 51/375 (13%), Positives = 111/375 (29%), Gaps = 58/375 (15%) Query: 11 VTKERTRHGKIIYYFRKG----HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 +T +T+ GK G +RIR+ + A L E Sbjct: 1 MTIRKTKSGKWTVDVSNGFHPVTQKRIRIIRKGLKSKKEA--LELEQHIRVVELKEKQFD 58 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNS----RISFESYFDQIIRKSGDFDYRKITTKHIRSG 122 T L + V+ R ++E I + + K+T HI Sbjct: 59 FVVTTDMLFDLLEEDDLKNGRKVSYTSTQRNNYER---HIKPYFKNTNLNKLTYDHIFEF 115 Query: 123 VESRKHTP-----------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 E K P ++ + L ++ +F +R+ + NP ++ + + I Sbjct: 116 REYLKTKPKKQNENEVLSYNTINKVLILLKKIFDTGIRKSLIDKNPVKNLRKLPIRKPDI 175 Query: 172 RPWTKEDMQQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAGVQ--------------- 215 + W+ E+ +F+ + L F ++G+R + Sbjct: 176 KFWSIEEFTRFRGLIRDDEISYDLFFVIAFFTGMRMGEILALNWNDINLLTNTIYVTKTV 235 Query: 216 -HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET------------FFINNDKQ 262 + N + T+ + + ++L + ++ I + Sbjct: 236 YFVNNTSYINTTKTRSGTRNITINQKLAEMLIDWKVKQKEKLEEFTKNTEELQIIQSTPI 295 Query: 263 KMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA- 319 + FK + H +R A++ + G + G ++ Sbjct: 296 SITKNMIDKKFKQILERDKDLKKIRIHDLRHSHASLLINQGEDYLVVKERLGHASITTTI 355 Query: 320 ETYTKG--ADRIRLG 332 +TY+ + + L Sbjct: 356 DTYSHLYPSKQKTLA 370 >gi|86141544|ref|ZP_01060090.1| mobilizable transposon, int protein [Leeuwenhoekiella blandensis MED217] gi|85832103|gb|EAQ50558.1| mobilizable transposon, int protein [Leeuwenhoekiella blandensis MED217] Length = 398 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 31/210 (14%), Positives = 64/210 (30%), Gaps = 7/210 (3%) Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193 +F ++R F Y N +V+ T E++Q + + Sbjct: 192 NKFKAALRQAF----EDGYTNRNYATAVKGFAMGETTREYLTYEELQNLAKAECKHQMLK 247 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253 AF F +GLR SD + +++ + + ++ Sbjct: 248 NAFLFSCLTGLRWSDVNKLTWSEVRDEEEGSRLVFKQKKTAAQEYQYLSDQARSILGDRK 307 Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATY 311 + F+ +AG+ K + H R A + + GA + + Sbjct: 308 QENARVFQGLKYGAHFNAEILRWCMRAGITKHITFHSARHTHAVLLLEHGADIYTVSKIL 367 Query: 312 GWKTVDQAETYTKGAD-RIRLGIKNSRRIS 340 G K + + Y K D + + ++ Sbjct: 368 GHKEIRTTQIYAKIVDTKKKEAAYLIPKLE 397 >gi|317506246|ref|ZP_07964065.1| phage integrase [Segniliparus rugosus ATCC BAA-974] gi|316255492|gb|EFV14743.1| phage integrase [Segniliparus rugosus ATCC BAA-974] Length = 444 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 48/387 (12%), Positives = 101/387 (26%), Gaps = 76/387 (19%) Query: 14 ERTRHGKIIYYFRKG----HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 ++ + G Y G G+R + A + R+ ++ R Sbjct: 6 KKAKGGTWFYCVDLGPDPVTGKRRQERKRGFRIKDEAEDALTERLAEIRQGVHVDRS--M 63 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG------ 122 T + ++ + L + +S+ + + ++ G R + H+ Sbjct: 64 TTAQYLRDWIDAKEESGLRAKTVLSYRQHIEAHLVPHLGHIKLRDLRATHVEKMLREVAK 123 Query: 123 ----------------VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 ++ +PSS + ++ A R+ ++ N + +RP Sbjct: 124 PPKAPEPGEKIAKGKRRNPKQLSPSSVRRVYATLSSALGAAKRKRLISFNAAVDADRPAA 183 Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK- 225 +RPW D+ F + G + FE +GLR + C + I Sbjct: 184 NRPKVRPWEPRDLGAFLDH-AAGERFGPMFEVSALTGLRRGELCALRWDCVDLERNQIVV 242 Query: 226 -------------TQKTGTIITVELP------------------------------DGFM 242 D Sbjct: 243 REQLVAIPSAGIICPYCSAEHKQFRFSTPKTDSGESRVVDLDAATVGVLMAQKLAQDSER 302 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301 + + F D + + F G+ + H +R A++ AG Sbjct: 303 EEWGDLYVDHGLVFAREDGNPIPPDDVTEKFNKLTDDLGLRRVRLHDLRHGQASLMLAAG 362 Query: 302 ATAHELMATYGWKTVD-QAETYTKGAD 327 + G ++TY + Sbjct: 363 VDMAVVSKRLGHSRHAFTSDTYAHLLE 389 >gi|220903503|ref|YP_002478815.1| integrase family protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219867802|gb|ACL48137.1| integrase family protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 343 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 44/317 (13%), Positives = 91/317 (28%), Gaps = 15/317 (4%) Query: 16 TRHGKIIYYFRKGHGRRIRLPYPH-ESTFIPAYMSALTGSTPKREYINSPRKKPTT---- 70 ++G +R + Y A ++ ++ T Sbjct: 6 KKNGTWYVQYRIPGEKYPLREYTGIGEEGKTAARELDRQVKEQKAKGAVTKRVQRTGRIH 65 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHT 129 L L Y + E+ F +I+ + + + + T Sbjct: 66 LDQLAQAYLTERKLSGKSAQWLEEMETLFNKKILPRLCFCPVDDLKYPDVIAMAAEAWPT 125 Query: 130 PS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S + ++L ++ F + + E A NP ER K ++ D+ + + Sbjct: 126 VSLATRQRYLGYLKAAFNFGRKHELTATNPLDKWERQKEPRLEF-NFSVPDLLKLYDCAA 184 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---ITVELPDGFMKL 244 + E+ + + S+ +H+ IK T T V + F Sbjct: 185 PHLAWAIKVEWHIGTRPGRSELFALRWRHIDFESRIIKIYGTKTDGSFRAVPMLPHFEAA 244 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302 L F+ + K + F+ +A + + + +R AT + GA Sbjct: 245 LKEKRKQALGEFVVDYKGRQVKK-LQTAFEGAQRRANLGYHVRLYDIRHLFATTMLNGGA 303 Query: 303 TAHELMATYGWKTVDQA 319 + G V Sbjct: 304 DHAAVAKLLGHSAVSTT 320 >gi|257064609|ref|YP_003144281.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM 20476] gi|256792262|gb|ACV22932.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM 20476] Length = 356 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 47/351 (13%), Positives = 103/351 (29%), Gaps = 39/351 (11%) Query: 18 HGKI---IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 +G ++Y + RR + +S A Sbjct: 8 NGTWTAQVWYRDSRNRRRHTIKRGFKSEEEANEWEA-------SFSKADSENMSMKFSQF 60 Query: 75 ISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRK-----H 128 ++ Y + L ++ + + +I+ G+ +ITT + Sbjct: 61 MNLYTEDMRPR-LRESTWHTKQHMIDKKIMPFFGEMSMDEITTIDVIRWQNEMMSEKGPK 119 Query: 129 TPSSAIQFLTS----MRVLFKWAVRQEYVAI-NPCLSVERPKRKTEGIRPWTKEDMQQFK 183 A +L + + +F AVR + + ++ + ++ WTKE+ +F Sbjct: 120 GTGYAETYLRAVNNQLNAIFNHAVRYYGLPKSPCARVDKMGSKQGDEMKFWTKEEYLKFA 179 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------------NNIFSIKTQK 228 + AFE L + GLR + + + ++ K Sbjct: 180 EAIMDKPDSFTAFEILYWCGLRVGEMLALTPSDINLERSTISVTKTFQRIHGRDTVTEPK 239 Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAH 287 T I + F+ I ++ T+ ++GV + H Sbjct: 240 TKKSIRLVTMPKFLSEEIAEYIASLDVGDHDRLFPFTKTRMHHEMDRGCKESGVKRIRIH 299 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337 +R ++ D G +A + G ++ + Y ++ R Sbjct: 300 DLRHSHVSLLIDMGFSAVAIADRVGHESANITYRYAHMFPNKQRDMASALD 350 >gi|227496487|ref|ZP_03926771.1| phage integrase family protein [Actinomyces urogenitalis DSM 15434] gi|226834014|gb|EEH66397.1| phage integrase family protein [Actinomyces urogenitalis DSM 15434] Length = 437 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 47/389 (12%), Positives = 107/389 (27%), Gaps = 62/389 (15%) Query: 2 TPSLRLPPFVTKERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE 59 TP R R + G++++ FR G +++ + Sbjct: 28 TPKPR--------RLKSGQVVWDVQFRPTPGSSPTREVFDTLPAAKQFVTLIDRVGGAAA 79 Query: 60 YINSPRKK-----PTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRK 113 TL I ++ S+ + ++ + ++ GD Sbjct: 80 RAARDMATMSGTSVPTLNTAIDQHLDELRA-SVTAGTIRRYQQIANTRLRPTLGDLPCDL 138 Query: 114 ITTKHIRSGVESRKHTPSSAIQFL-------------TSMRVLFKWAVRQEYVAINPCLS 160 IT + + ++ TP + + + + VR + N Sbjct: 139 ITRPVVTQWLAKQRETPVQRGRTKGSTPSYKTLRGAQALLSSVLEHQVRAGTIPTNVARG 198 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220 ++ P+ + + + L L GLR ++ L + Sbjct: 199 LKLPRDGIVRDKVFLTPTQFATLLDCVPDAHKPLVS-TLYGLGLRFGEATALTPADLDLD 257 Query: 221 IFSIKTQKTGTI------------------ITVELPDGFMKLLAMTPIGKET----FFIN 258 + T TV +P + +L K+ F Sbjct: 258 AAQPVVRVTKAWKEGKKGSYLGSPKTRRSIRTVTVPPSLIPILREQARKKKPGALLFPNA 317 Query: 259 NDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTV 316 +Q + + ++ +G++ + H +R A+ AG + G +++ Sbjct: 318 YGEQITSGAFHARVWQPAVAASGLDPAPRVHDLRHSHASALIAAGIPLPVIQRRLGHESI 377 Query: 317 DQA-ETYTKGADRIRLGIKNSRRISSVVD 344 + Y L + +S +D Sbjct: 378 QTTVDVYGH------LAPEAYAGAASAID 400 >gi|167553284|ref|ZP_02347034.1| integrase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205322250|gb|EDZ10089.1| integrase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 342 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 46/332 (13%), Positives = 88/332 (26%), Gaps = 38/332 (11%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 + G I + R+ F + + ++ TLK Sbjct: 4 RKNPAGGWICELYPNGAKGKRIR----KKFATKGEALAFEQHTVQNPWQEEKEDRRTLKE 59 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR------- 126 L+ + ++ L + + G+ R + E R Sbjct: 60 LVDSWYRAHGIT-LKDGLKRQLAMH--HAFECMGEPLARDFDAQMFSRYREKRLKGEYAR 116 Query: 127 -----KHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + +P + L R +F R E+ NP ++ + + + T + + Sbjct: 117 SNRVKEVSPRTLNLELAYFRAVFNELNRLGEWKGENPLKNMRPFRTEEMEMAWLTHDQIS 176 Query: 181 QFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 Q + P L L +G R S++ L + K TV + Sbjct: 177 QLLGECNRHDHPDLETVVRICLATGARWSEAESLKKSQLAKYKITYTNTKGRKNRTVPIS 236 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA----HGVRKFSA 294 + L G+ F++ + G+ A H +R A Sbjct: 237 KELYESLPDDKKGRLFSDCYG------------AFRSALERTGIELPAGQLTHVLRHTFA 284 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGA 326 + G L G + Y A Sbjct: 285 SHFMMNGGNILVLQRVLGHTDIKMTMRYAHFA 316 >gi|288870073|ref|ZP_06112814.2| integrase/recombinase, phage integrase family [Clostridium hathewayi DSM 13479] gi|288868544|gb|EFD00843.1| integrase/recombinase, phage integrase family [Clostridium hathewayi DSM 13479] Length = 376 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 45/269 (16%), Positives = 84/269 (31%), Gaps = 23/269 (8%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTP 130 I + S + N+ + ++ G IT +R E R Sbjct: 94 IRMFVASKKAVNRQTNTLKQYTREICNMLDFLG-KRLEDITGMDLRYYYGVMRERRGIKM 152 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 S+ L + + + + ++ V+ NP V K + +P++ +M+ ++ SE Sbjct: 153 STMQTRLHYLSSFWDFMITEDLVSSNPVKKVGLLKIEKTIKKPFSAAEMEALRTSCSE-L 211 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMTP 249 + R EFL +G+R S+ V ++ I K L DG L Sbjct: 212 RDRALVEFLYSTGVRVSELVSLNVGDIEMGKQELIVYGKGSKERKTYLTDGAKFYLRRYL 271 Query: 250 IGKETFFINND---------------KQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293 + ++ + +AGV H R+ Sbjct: 272 RTRCENEGMTMEELQGRPLFATLDRPHGRLTVAGVQYMLRQLGRRAGVEGVHPHRFRRTI 331 Query: 294 ATISADAGATAHELMATYGWKTVDQAETY 322 AT G ++ G + +D Y Sbjct: 332 ATDLLSRGMPIEQVKEFLGHEKLDTTMIY 360 >gi|160945578|ref|ZP_02092804.1| hypothetical protein FAEPRAM212_03107 [Faecalibacterium prausnitzii M21/2] gi|158443309|gb|EDP20314.1| hypothetical protein FAEPRAM212_03107 [Faecalibacterium prausnitzii M21/2] Length = 327 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 31/261 (11%), Positives = 77/261 (29%), Gaps = 14/261 (5%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHTP 130 + + + + + + + ++ G ++ITT +R R+ + Sbjct: 53 AAAFITAKRIEGCSEKTLTYYSKTIEAMLNDVGKSP-QQITTDDLRKYLTDYQTQRRSSK 111 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 + + F W ++++ +P + + K +T E ++ + S Sbjct: 112 VTIDNIRRILSSFFSWLEDEDFIVKSPVRRIHKVKTAKIIKETYTDEALELMRDNCST-V 170 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTP 249 + + L SG+R + + + N V L Sbjct: 171 RDLAIIDLLASSGMRVGELVTLNREDINFNERECVVFGKGNKERLVYFDARTKIHLQNYL 230 Query: 250 IGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGA 302 + +++ + + +NK H R+ AT + D G Sbjct: 231 DERSDSNPALFVTLKEPHERLMIGGVETMLRELGRRLKLNKVHPHKFRRTLATSAIDKGM 290 Query: 303 TAHELMATYGWKTVDQAETYT 323 ++ G + +D Y Sbjct: 291 PIEQVQQLLGHQKIDTTMRYA 311 >gi|237743743|ref|ZP_04574224.1| DNA integration/recombination/invertion protein [Fusobacterium sp. 7_1] gi|229432774|gb|EEO42986.1| DNA integration/recombination/invertion protein [Fusobacterium sp. 7_1] Length = 343 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 45/343 (13%), Positives = 107/343 (31%), Gaps = 25/343 (7%) Query: 11 VTKERTRHGK-IIYYFRKG--HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67 V K + + K + G G++ R + L G + Sbjct: 10 VYKLKGKRRKCWVARVTVGFVDGKQKR-KIIGTYETRKEAQAELLGYLNNPVLYSGK--- 65 Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127 T K + + S + +++ + + + ++ D + + ++ + Sbjct: 66 --TFKDVKDLWY-SNYSKTVSDVTLRNVGNQLKKL-EVFNDEKIKDLKLYTLQKFFDDLD 121 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S + +++ ++F++A++ E++ N +E K + R D + Sbjct: 122 SAYGSKLALRSALNMIFEFALKNEFIETNRIKFIELGKNEKVVERKIFTTDEINILF-DN 180 Query: 188 EGSQPRLAFEFLL------YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 S R + Y+GLR + + + + ++ TI + Sbjct: 181 LDSDNRFIKKMSYATLILIYTGLRIGELMNLKTEDVDLKNNILSIVESKTIAGIRKVPIS 240 Query: 242 MKLLAMTPIGKETFFINNDKQK----MNATQFSIWFKAKATKAGVN-KSAHGVRKFSATI 296 K++ + + K N F F+ + + H R AT+ Sbjct: 241 EKIINLFKDNIDYSKEYFLYNKKGGQYNYVNFFQQFQTMLELLNLERHTIHDTRHTFATL 300 Query: 297 SADAGATAHELMATYGWKTVDQAE-TYTKG-ADRIRLGIKNSR 337 +A A + ++ G E YT + +R + Sbjct: 301 LNNANANSTSIIKLIGHSDFSMTENVYTHKDIEELRKAVNLLN 343 >gi|296393161|ref|YP_003658045.1| integrase family protein [Segniliparus rotundus DSM 44985] gi|296180308|gb|ADG97214.1| integrase family protein [Segniliparus rotundus DSM 44985] Length = 329 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 39/261 (14%), Positives = 91/261 (34%), Gaps = 2/261 (0%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 L+ +++ + + + + +G R + + + ++ Sbjct: 54 LLEDWQTDMTIQRREETTISERVRFVSKFHKDTGVQPAHAQVIDIKRWIAQHPEWSTATV 113 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193 + T +R FKW Q++ + +P + + + RP + + + + + R Sbjct: 114 ATYTTHLRAWFKWLQFQDHRSDDPMVKIAAVRHPERDPRPVSSDGLARLLADCRMQPTTR 173 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253 LR ++ + + + ++ F + K T+ L + LA + Sbjct: 174 ARVLLAACQELRVAEIAKIRGEDIVDSRFLVVNGKGNRTKTLPLHPLIAE-LAKKMPAQG 232 Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGW 313 +F + +++ S +A V + H +R + T +D GA + Sbjct: 233 FWFPPPNGGHVDSKSVSQVISLAMRRAKVKGTPHSLRHWYGTELSDRGADLAVVQDLMRH 292 Query: 314 KTVDQAETYTKGAD-RIRLGI 333 K+ + YT AD R R I Sbjct: 293 KSPNTTRGYTLIADKRKRQAI 313 >gi|297172228|gb|ADI23207.1| integrase [uncultured Gemmatimonadales bacterium HF0770_11C06] Length = 296 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 40/251 (15%), Positives = 90/251 (35%), Gaps = 8/251 (3%) Query: 98 YFDQIIRKSGDFDYRKITTKHIRSGV--ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155 + + GD ++TT + +++ S+ + L +R F AV + + Sbjct: 1 MLARFVATVGDKRLDQVTTFDVERWKTVRAKQVRKSTVNRELNIVRGCFSRAVEWKRLVK 60 Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215 +P +V+ + + +R + ++++ + + L L LR S+ Sbjct: 61 SPMATVKPFRVENTRLRVLSPDEIRVVLTEAPQDLA--LIARVTLEGLLRVSEVLSLMRS 118 Query: 216 HLQNNIFSIKTQKTGTIITVELPDGFMKLL--AMTPIGKETFFINNDKQKMNATQFSIWF 273 +Q + + K + V + + L G + + F Sbjct: 119 DIQRDYLVVTHTKNNKVRKVPISSDLRRALLARTHQSGYVFGETRYQGHPATQSTVTQAF 178 Query: 274 KAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI-RL 331 + + G+ N S H +R A+ G + + GW+++ E YT D R Sbjct: 179 RRVMARLGIANASHHTLRHTGASSMLADGISVRVVQEIGGWRSLRMLERYTHPTDAETRR 238 Query: 332 GIKNSRRISSV 342 + ++ R++ V Sbjct: 239 AVASASRLTGV 249 >gi|312873817|ref|ZP_07733861.1| site-specific recombinase, phage integrase family [Lactobacillus iners LEAF 2052A-d] gi|311090698|gb|EFQ49098.1| site-specific recombinase, phage integrase family [Lactobacillus iners LEAF 2052A-d] Length = 372 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 56/358 (15%), Positives = 109/358 (30%), Gaps = 38/358 (10%) Query: 1 MTPSLRLPPFVTKERTRHGKIIYYFRKG-----HGRRIRLPYPHESTFIPAYMSALTGST 55 M L + + ++G+ YYF+ +G+RI T+ A + Sbjct: 1 MPRKTNLS--IKEYTLKNGQKRYYFKISLGENSNGKRIVTTRRGFKTYADA--DQVYNQL 56 Query: 56 PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115 + + + ++ T+ L + ++ ++R+ Y + I G+ KIT Sbjct: 57 TRVKADDFVKQNQITIDELHKIWFENYKNAVKESSARMEKNVYTNHIKPCFGNQFIDKIT 116 Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 ++ + + + + + M LF++ +R YV+ N V PK+ T R Sbjct: 117 VVALQKWADKKATELVAFRRVIAIMNALFEYGMRLNYVSSNLVKRVLIPKKTTRKRRDIE 176 Query: 176 KEDMQQFK------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--------- 220 K + + + F+ L +GLR S+ Q + Sbjct: 177 KNVYTREELELFLKIAKTRSIMQYTFFKILACTGLRRSECLALTWQDIDFENNLLSVSKT 236 Query: 221 ----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF------S 270 S +T T L I + + F + Sbjct: 237 LSSGFNSQLILQTPKSRTSNRKIPISSALRDLLIEYQKQSTSEKLFHTVNDTFLHLSAPN 296 Query: 271 IWFKAKATKAG--VNKSAHGVRKFSATISA-DAGATAHELMATYGWKTVD-QAETYTK 324 W + HG R AT+ + + G K ++ YT Sbjct: 297 TWLNEIYHAHPELREITVHGFRHTFATLLISETNVKPKTVQMLLGHKNIEITLNLYTH 354 >gi|225874532|ref|YP_002755991.1| putative tyrosine recombinase XerD [Acidobacterium capsulatum ATCC 51196] gi|225794156|gb|ACO34246.1| putative tyrosine recombinase XerD [Acidobacterium capsulatum ATCC 51196] Length = 302 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 39/283 (13%), Positives = 80/283 (28%), Gaps = 35/283 (12%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESR 126 L+ +Y+ L S +++S + + + + + Sbjct: 8 DLLRDYQSYLRVEKGLRPLSCQAYQSDLLLFAEYLESMNTALLDARSEHVAGFLEHLNTH 67 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-- 184 S + L+ +R +KW + + + +P ++++ P + +EDM Sbjct: 68 GVVSRSVARKLSCLRGFYKWLILDKRIHRDPTINMDSPSAWKILPKSLAQEDMTAMLDRA 127 Query: 185 --------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITV 235 + E L GLR S+ V L + + K V Sbjct: 128 RLLAEHPEADGIALRNYAILELLYAGGLRVSELTGLRVADLSLDAGRVLVRGKGDKERLV 187 Query: 236 ELPDGFMKLLAMTPIGKETF------------FINNDKQKMNATQFSIWFKAKATKAGVN 283 L + L F++ + + + Sbjct: 188 PLGQPAVAALRQYLDRGRAELARKARGAQGALFLSARGKPLTREYVWKLVRQYGA----- 242 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 S H +R +AT + GA + G + + YT A Sbjct: 243 -SPHMLRHSAATHMVEHGADLRTVQTFLGHADIATTQVYTHVA 284 >gi|294617989|ref|ZP_06697594.1| site-specific recombinase, phage integrase family [Enterococcus faecium E1679] gi|291595798|gb|EFF27086.1| site-specific recombinase, phage integrase family [Enterococcus faecium E1679] Length = 381 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 50/380 (13%), Positives = 110/380 (28%), Gaps = 49/380 (12%) Query: 11 VTKERTRHGKIIYYFRKG------HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64 + + + G + F+ G+ +R + T A L E Sbjct: 4 IKQYEKKDGTKAWLFQTYLGINPLTGKEVRTTRRNFKTKKEA-QIELNRLLVDFEENGLK 62 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 + T + + + +S V + I+ K G F ++IT KH++ + Sbjct: 63 QDTNETFQEIYELWYESYKTTVKEVTQLKIEIKFNKWILPKYGKFRIKEITVKHVQKILN 122 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK- 183 +++ +FK+A+ + NPC V P R E + K + Sbjct: 123 QWAKMTDQYKVLHSTVSRIFKYAMTLGLITKNPCELVIMPNRNVEKKKDTVKIYSRNQLE 182 Query: 184 ---------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--------- 225 + FL +SG R S++ + + ++ Sbjct: 183 ILFQYLESKRSTYRADYDKTLLRFLFFSGCRISEALALNWSDIDFDSNTVTINKTLSQTK 242 Query: 226 -------------------TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA 266 KT + + +L + F K+ + Sbjct: 243 YGYKISSPKTKNSYGSLSLDNKTINWLKKWQINQKRYMLTLGITDPTMIFCGIYKEIITK 302 Query: 267 TQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK 324 +G+ H R A++ ++G + E+ ++ +TY Sbjct: 303 HAIYSRMITICKNSGIPFLGNHVTRHTHASMLLESGVSMKEVQERLRHSSIKLTMDTYAH 362 Query: 325 GADRIRLGIKNSRRISSVVD 344 + K +++ ++ Sbjct: 363 LTKETK--EKTVEKLAEHLN 380 >gi|260433010|ref|ZP_05786981.1| phage integrase family protein [Silicibacter lacuscaerulensis ITI-1157] gi|260416838|gb|EEX10097.1| phage integrase family protein [Silicibacter lacuscaerulensis ITI-1157] Length = 417 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 46/304 (15%), Positives = 99/304 (32%), Gaps = 26/304 (8%) Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119 I + + +K L+ +Y K + + + + + GD D ++T + I Sbjct: 96 RIEAQLSERDKVKTLLEQYAKRHLSKLRSGS--EVKRRLETEFLPRYGDHDIHEVTKRDI 153 Query: 120 RSGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 +E + +A + + F W + ++ + I+P V+ ++ R + Sbjct: 154 LELLEKIADSGRITTANRMRLYLSGFFNWCLERDAIPISPVQGVKPVAKEKSRDRVLNDD 213 Query: 178 DMQQFKSFW-SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV- 235 +++ F G R A + LL +G R ++ L + + + Q+T Sbjct: 214 EIRWFWKACERAGYPWRQAGQTLLLTGQRLNEVLGMTDDELHGDAWHLSAQRTKNGREHL 273 Query: 236 --------------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 E + +LL T + +++ I Sbjct: 274 VPLSQAARDVLSSVERIESPSRLLFTTTGRTPICGHFKARNRLSRFMAEIAEAETGEAIE 333 Query: 282 VN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD---QAETYTKG--ADRIRLGIKN 335 + + H +R+ +AT A G A + Y + AD R ++ Sbjct: 334 IPHWTFHDLRRTAATGMARLGIPVRVTEAVLNHVSGTGGGIVAVYQRHDFADEKRKALEA 393 Query: 336 SRRI 339 R Sbjct: 394 WARF 397 >gi|33242394|ref|NP_877335.1| site-specific tyrosine recombinase XerD [Chlamydophila pneumoniae TW-183] gi|33236905|gb|AAP98992.1| tyrosine recombinase [Chlamydophila pneumoniae TW-183] gi|269302825|gb|ACZ32925.1| tyrosine recombinase XerD [Chlamydophila pneumoniae LPCoLN] Length = 299 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 39/284 (13%), Positives = 84/284 (29%), Gaps = 29/284 (10%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMR 141 L S ++ + S + I+ + E ++ + L +++ Sbjct: 22 RGLCQQSIAAYRQDISSFLTISAISSPQDISQNSVYIFAEELYRRKEAETTLARRLIALK 81 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM--------QQFKSFWSEGSQPR 193 V F + Q+ + P + E PK T +++ Q K+ + Sbjct: 82 VFFLFLKDQQLLPYPPII--EHPKIWKRLPSVLTPQEVDALLAVPLQMEKNPRHLAFRDT 139 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---ELPDGFMKLLAMTPI 250 L +G+R S+ C + H+ ++ + + + T + + L Sbjct: 140 AILHTLYSTGVRVSELCDLRLGHVSDDCIRVTGKGSKTRLVPLGSRAREAIDAYLCPFRD 199 Query: 251 GKETFFINNDKQKMNATQF----SIWFKAKATKAG----VNKSAHGVRKFSATISADAGA 302 + + D ++ S ++ A S H +R AT D A Sbjct: 200 QYQKKNPHEDHLFLSTRGHKLERSCVWRRIHNYAKQVTSKPVSPHSLRHAFATHLLDNKA 259 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346 + G + E YT A + + + Sbjct: 260 DLRVIQEMLGHARIASTEVYTHVA-----ADSLIEKFLAHHPRN 298 >gi|319744124|gb|EFV96497.1| phage integrase family site-specific recombinase [Streptococcus agalactiae ATCC 13813] Length = 384 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 56/366 (15%), Positives = 117/366 (31%), Gaps = 55/366 (15%) Query: 11 VTKERTRHGKIIYYFR-------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63 V K ++ G I Y+ + G + A+ +A+ +++ Sbjct: 3 VHKYQSTKG-ITYFVKVYLGLNDYGKKKYYTKRGFKTRKAAKAHETAVNHQLNSGTFVHI 61 Query: 64 PRKKPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 + T + L + ++ + AV + + I+ G+ KI+ + Sbjct: 62 TAQTTYTYQELYQRWYEAYKDTVEATTAVKTADLYR---LHILPVFGEKKISKISPLDCQ 118 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-IRPWTKEDM 179 + + + T + Q + +F++A+ Y+ NP V PK K WT +++ Sbjct: 119 TFITDKAKTFKNMKQIKSYTSKIFEFAINMNYIERNPMSKVIMPKLKKTVSENYWTVDEL 178 Query: 180 QQFKSFWSEGSQPRLAFEFLL--YSGLRCSDSCRAGVQ----------------HLQNNI 221 F + E + F L YSGLR + + + + Sbjct: 179 HHFLTIILENEPYKHYALFRLLAYSGLRKGELYALKWEDFDSENQLLTVSKSLGRIDGHA 238 Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTP--------------------IGKETFFINNDK 261 T+ ++ ++ L D +L + + + Sbjct: 239 IEKGTKNIFSVRSIYLDDETCSILNKWKQETSREKWQLSVQPLSLDKEFMFTYYNRDGEV 298 Query: 262 QKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA- 319 + ++A + K K + K S HG R AT+ + G G + Sbjct: 299 EPLHADYINNILKRIIRKHNLKKISPHGFRHTHATLMIEMGIDPVNTAKRLGHASSQMTL 358 Query: 320 ETYTKG 325 +TY+ Sbjct: 359 DTYSHT 364 >gi|319401403|gb|EFV89613.1| phage integrase family protein [Staphylococcus epidermidis FRI909] Length = 374 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 41/371 (11%), Positives = 100/371 (26%), Gaps = 45/371 (12%) Query: 16 TRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 R K + G + + T A +A+ + + + TL Sbjct: 6 KRGNKWRFKVHFKDHNGDKKYITKSGYRTKTEAKKAAIEIESKLNKGYKEEKS--YTLTS 63 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130 + Y + ++ +S + +I+ D + + IT +S + ++ Sbjct: 64 WLEYYLNTWRKNKISDSSFEIEQFSKKRILDFYNDINIKDITPSMHQSFINHLIEKGYSK 123 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK---TEGIRPWTKEDMQQFK-SFW 186 S+ + ++ + A + NPC + + + + K+ ++ F Sbjct: 124 STLSKTHNLLKRSLERAKYDRLIYFNPCEGITLNHKDLKIKDKAKYLPKDKVKPFLAMVK 183 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-------------QNNIFSIKTQKTGTII 233 F L+ +G+R ++ + K Sbjct: 184 KRDVYQYFLFRTLIETGMRIGEASALCWKDYDRKLKTISITKSYNQKRNKFGPTKNKENR 243 Query: 234 TVELPDGFMKLLA---------------MTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278 + + + L + F N + + + Sbjct: 244 IIFISNELANELFKLKTLQNGNKIANSDFYNNSYDYIFCNEFGEPLPRSTTHNTMMYVTK 303 Query: 279 KA---GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIK 334 K G S H +R AT+ ++ + G K+ E Y+ ++ Sbjct: 304 KLLGKGNELSIHKLRHTHATLLLESNVPMKVIQERLGHKSEAITSEVYSHVT--KKMNDN 361 Query: 335 NSRRISSVVDS 345 + + Sbjct: 362 AKENFEKYIKN 372 >gi|255067353|ref|ZP_05319208.1| xylulose-5-phosphate/fructose-6-phosphate phosphoketolase [Neisseria sicca ATCC 29256] gi|255048323|gb|EET43787.1| xylulose-5-phosphate/fructose-6-phosphate phosphoketolase [Neisseria sicca ATCC 29256] Length = 352 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 51/315 (16%), Positives = 97/315 (30%), Gaps = 13/315 (4%) Query: 17 RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76 R+G R GRRIR A + ++ + K + Sbjct: 6 RNGVYYVDIRTESGRRIR-QSVGTKNKKEAQKLHDKLTYELWQHEHFDEKPKRLWEEAAV 64 Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136 + K S +++ K ++ I V+ + S+ ++ Sbjct: 65 RWIKEKSDKK----SIKDDICRL-RMLPKLRGVYLHHLSRDFIMDVVDRLPCSNSTKNRY 119 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196 + +R + A + + K++ E W K + + R Sbjct: 120 IALIRSILYKAQNEWGWIDKV--PKLKLKKEAEKRIRWLKPEEAEQLINALPDDHWRAIA 177 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----TIITVELPDGFMKLLAMTPIGK 252 +F +GLR + + + N + I V L D +++L+ Sbjct: 178 KFSFCTGLRQRNVFGLRWEQVDLNRKTAWIYPDEAKAGRPIGVPLNDVAIRVLSERMGIH 237 Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATY 311 +T+ N + K S +K +AG+ N H +R A+ G L Sbjct: 238 KTYVFTNRENKPITALSSRMWKRTLERAGISNFRWHDIRHTWASWLVQRGVPLVALKEMG 297 Query: 312 GWKTVDQAETYTKGA 326 GW+ +D Y A Sbjct: 298 GWERLDMVMRYAHLA 312 >gi|167767086|ref|ZP_02439139.1| hypothetical protein CLOSS21_01604 [Clostridium sp. SS2/1] gi|167711061|gb|EDS21640.1| hypothetical protein CLOSS21_01604 [Clostridium sp. SS2/1] gi|291559577|emb|CBL38377.1| Site-specific recombinase XerD [butyrate-producing bacterium SSC/2] Length = 328 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 33/266 (12%), Positives = 78/266 (29%), Gaps = 20/266 (7%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-------SGDFDYRKITTKHIRSGVES 125 + + + + + I + + Q++ G D R ++ Sbjct: 52 DYLEIFLSAKKIEGCSEKTLIYYRNTIQQMLDSVEKSVCSIGTEDLRD----YLADYQAE 107 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 +K + + F W ++Y+ +P + R K + +T E ++ + Sbjct: 108 KKSSKITIDNIRRIFSSFFAWLEDEDYIIKSPVRRIHRIKSGSTIKETYTDEQLETMRDN 167 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVELPDGFMKL 244 + + L +G+R + + + + I K V Sbjct: 168 CG-NLRDLALIDILASTGMRVGELVLLNKEDISFDERECIVFGKGDKERMVYFDARTKIH 226 Query: 245 LAMTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATIS 297 L + +M + + + ++K H R+ AT++ Sbjct: 227 LQNYLNSRVDTNNALFVSLKAPYDRMKIGGIEVRLRELGKRLNIDKVHPHKFRRTLATVA 286 Query: 298 ADAGATAHELMATYGWKTVDQAETYT 323 D G +L G + +D Y Sbjct: 287 IDKGMPIEQLQKLLGHQRIDTTLQYA 312 >gi|125624456|ref|YP_001032939.1| putative integrase/recombinase [Lactococcus lactis subsp. cremoris MG1363] gi|124493264|emb|CAL98231.1| putative integrase/recombinase [Lactococcus lactis subsp. cremoris MG1363] gi|300071244|gb|ADJ60644.1| putative integrase/recombinase [Lactococcus lactis subsp. cremoris NZ9000] Length = 324 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 40/305 (13%), Positives = 88/305 (28%), Gaps = 45/305 (14%) Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGVE 124 +++ I E L+ N+ I E D +I HI+ + Sbjct: 2 EISIQSAIQEMLFDNKARGLSKNTIIFREKILKIFSVFLCQNDILNINEIKPIHIKQYLV 61 Query: 125 SR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 R ++ ++ L +R LF + + +EY+ K + + T D + Sbjct: 62 DRLECGYSETTVNGHLRVIRALFSYCINEEYIRYEEAPIHRVKWIKEKKMIVNTFTDSEI 121 Query: 182 FKSFWS-----------------------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218 + + L L +G+R +++ ++++ Sbjct: 122 KRMLHYTRKRTFHTIKKTGKGRTGFCTKFVNERNYLLILILTDTGMRINEALSLKLENIN 181 Query: 219 NNIFSIKTQKTGTIITVELPD-GFMKLLAMTPIGKETF---------------FINNDKQ 262 ++ IK K V + + L + F F Sbjct: 182 DSQIIIKNGKGKKDRIVHCSPLVYKQYLKYNRAKENYFLSNGIVPIENIFVTKFGKKYDY 241 Query: 263 KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 ++ + KA + + S H R + A + + G ++ E Y Sbjct: 242 RLAEKEIYKIGKAVNIRDTIRISPHTFRHYFAQKLVRENVDIYMIQKLLGHASIKTTEIY 301 Query: 323 TKGAD 327 + + Sbjct: 302 LRSLN 306 >gi|119668679|emb|CAL23817.1| integrase [Staphylococcus aureus] Length = 391 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 46/381 (12%), Positives = 104/381 (27%), Gaps = 57/381 (14%) Query: 18 HGKIIYYFRKGH----GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 Y G G+ + A A R + +T K Sbjct: 9 KNNWRYRISLGKNTETGKYEYISKTGFKRKSDAKHQAEMIERQLRN-GDYIAPSSSTFKQ 67 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPS 131 + ++ K + V+S + + I + + I + V+ +++ + Sbjct: 68 VADDWLKQY-ANDVKVSSVRARKKAIQHAIERFNTKPIQTIKKHDYQRFVDDMSAQYSKN 126 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 + S ++FK+A + P ++RPK+K E ++F Sbjct: 127 YVDSIVASTNMIFKYAYDMRLIKAMPSDGIKRPKKKVSVEELEDIEIHKKFLEKDELFQF 186 Query: 192 PRLAFEFL------------LYSGLRCSDSCRAGVQHLQNNIFSI--------------- 224 +A Y+G+R + + +I Sbjct: 187 LEVAKYHHSPQNSFEIFTTLAYTGMRAGELLALKWSDIDFENNTISITKTYYNPNNNKKH 246 Query: 225 ----------------KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ 268 ++ + F + + + + Sbjct: 247 YQILTPKTESSIGKISVDPHVIQLLKDYKIYVQDTWKNELYVDNNFVFTDLNGYPLVIKK 306 Query: 269 FSIWFKAKATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324 S W +A K + + S H R + +AG E+ K ++ Y K Sbjct: 307 LSTWIQAIMKKTDITNKHISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMNIYAK 366 Query: 325 GADRIRLGIKNSRRISSVVDS 345 + + S++ S ++++ Sbjct: 367 ITNSYK--KDASQKFSQLMEN 385 >gi|29840494|ref|NP_829600.1| site-specific tyrosine recombinase XerD [Chlamydophila caviae GPIC] gi|29834843|gb|AAP05478.1| integrase/recombinase XerD [Chlamydophila caviae GPIC] Length = 298 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 35/263 (13%), Positives = 79/263 (30%), Gaps = 23/263 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMR 141 L NS ++ ++ + +I+ + V+ S+ + L +++ Sbjct: 22 RGLCRNSISAYCQDITLFLKINAITSTEEISQDSVYLFVQQLHKRKEAESTLARRLIALK 81 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-------WSEGSQPRL 194 V F++ + + P + E PK T +++ S ++ Sbjct: 82 VFFRFLKEAKLLDHPPLI--EHPKIWKRLPSVLTPKEVDALLSAAQQSKTSPIISARDTA 139 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL---LAMTPIG 251 L +G+R S+ C + + ++ + + + T + + L Sbjct: 140 ILLTLYSTGIRVSELCDLCISDVSDDFLRVTGKGSKTRLVPLGKVACKAIDAYLCPFRET 199 Query: 252 KETFFINNDKQKMNATQFS----IWFKAKATKAG----VNKSAHGVRKFSATISADAGAT 303 + ++ ++ A S H +R AT D A Sbjct: 200 FQKLHPEEHHLFLSVRGHRLERSCVWRRIHYYAKQVTHKRVSPHSLRHAFATHLLDNKAD 259 Query: 304 AHELMATYGWKTVDQAETYTKGA 326 + G + E YT A Sbjct: 260 LRIIQEMLGHARIASTEIYTHVA 282 >gi|332076314|gb|EGI86780.1| phage integrase, N-terminal SAM-like domain protein [Streptococcus pneumoniae GA41301] Length = 298 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 38/283 (13%), Positives = 88/283 (31%), Gaps = 41/283 (14%) Query: 74 LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVESRK 127 LIS Y L+ ++ ++++ Q + D+D K+T +I Sbjct: 5 LISTYLDYCKTHKRLSSHTIRAYKNDLMQF--YNSDYDNVESYIEKLTRSNI-------- 54 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER-PKRKTEGIRPWTKEDMQQFK--- 183 ++ + + M+V + + Q + NP + + + + + ++ Sbjct: 55 -KTNTLRRKIACMKVFYNYLKYQNIIEENPFNQLRFQFRTEKVLPKTIPYDILKSIFIYL 113 Query: 184 ----------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGT 231 + L LL +G+R S+ C ++ + N I + Sbjct: 114 EQKVIVSKTDYQKQHAERNLLIISLLLSTGIRISELCHIHLKDINLSNKTLHIIGKGKKE 173 Query: 232 IITVELPDGFMKLLAMTPIGKET------FFINNDKQKMNATQFSIWFKAKATKAGVNKS 285 I LL F + + ++ + K + +++ Sbjct: 174 RILFLGDQKTFNLLETYINKTRNESNDFLFPGKHSLKPLSEQSVRLVIKRIVEQNNFSRT 233 Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 H R AT+ D+ + G ++ + YT + Sbjct: 234 ITPHMFRHSFATMLLDSDVDIRYIQQILGHSSISITQIYTHVS 276 >gi|237744716|ref|ZP_04575197.1| conserved hypothetical protein [Fusobacterium sp. 7_1] gi|229431945|gb|EEO42157.1| conserved hypothetical protein [Fusobacterium sp. 7_1] Length = 329 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 31/263 (11%), Positives = 83/263 (31%), Gaps = 14/263 (5%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS- 131 + + + H + S +++ + + +K + + ITT +R +++ + + Sbjct: 53 EYLEAFLSAKHVEGCSRKSLKYYKATIENLFKKI-EKSIKHITTNDLREYLDNYQKEGNA 111 Query: 132 ---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + F W ++Y+ +P + + K T ++ E M+ + Sbjct: 112 SKITIDNIRRIFSSFFAWLEEEDYILKSPVRRIHKVKTGTVVKETYSDEAMEIMRD-NCR 170 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAM 247 + + L +G+R + + ++ + V L Sbjct: 171 SLRDLAIIDILASTGMRVGELVKLNIEDIDFEGRECVVFGKGDKERKVYFDARTKIHLHN 230 Query: 248 TPIGKETFFIN------NDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADA 300 ++ +++ + I + K + H R+ AT + D Sbjct: 231 YLKTRDDDNSALFVSLLKPHKRLQISGVEIMLRQLGRKLNITKVHPHKFRRTLATKAIDK 290 Query: 301 GATAHELMATYGWKTVDQAETYT 323 G ++ G + +D Y Sbjct: 291 GMPIEQVQQLLGHQKIDTTLQYA 313 >gi|166032260|ref|ZP_02235089.1| hypothetical protein DORFOR_01963 [Dorea formicigenerans ATCC 27755] gi|166027983|gb|EDR46740.1| hypothetical protein DORFOR_01963 [Dorea formicigenerans ATCC 27755] Length = 364 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 44/339 (12%), Positives = 98/339 (28%), Gaps = 32/339 (9%) Query: 15 RTRHGKI-IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 ++ K ++ R + AL + N + + Sbjct: 3 VIKNNKTGMWEVRTYYKDLTGARKQKTKRGFAKKSEALEWERNFKLKENQSIS--MSFQS 60 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK----- 127 + Y + N+ ++ + + +I+ G I T + Sbjct: 61 FVDIYLTDLEPR-IKRNTFLTKKHIIETKILPYFGKRKLDDIRTSDVIQWQNEIMKLKKD 119 Query: 128 ----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-IRPWTKEDMQQF 182 +P+ + + AV + N ++ + WT+E+ Q F Sbjct: 120 NGELFSPTYLKTIHNQLSAILNHAVNMYGLKDNVARKAGTMGKEENKEMEFWTQEEFQAF 179 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------- 232 ++ AFE L ++GLR + +++ K+ Sbjct: 180 LECVADKPISYYAFEMLYWTGLREGELLALTPADFNFEKKTLRINKSYQRLEGKDVITDP 239 Query: 233 ------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-S 285 T+ +PD + +++ ++ + A AGV + Sbjct: 240 KTPKSNRTIVMPDFLTIEMEDFIKSIYGIKMDDRIFTISKSYLHHEMDRGAKLAGVKRIR 299 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 HG+R ++ + G +A + G + VD Y Sbjct: 300 IHGLRHSHISLLLNLGFSALAIGERVGHEAVDITYHYAH 338 >gi|84387844|ref|ZP_00990859.1| Site-specific recombinase XerD-like [Vibrio splendidus 12B01] gi|84377359|gb|EAP94227.1| Site-specific recombinase XerD-like [Vibrio splendidus 12B01] Length = 411 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 50/345 (14%), Positives = 98/345 (28%), Gaps = 34/345 (9%) Query: 28 GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI-SEYRKSAHWGS 86 G + LP A G PK E + TL + S Sbjct: 70 GQWPDMDLPTVRNKARKLKVQIA-DGIDPKLERDKQVETQVPTLYDFFHDTFIVSKKSKG 128 Query: 87 LAVNSRISFESYFDQII--RKSGDFDYRKITTKHIRSGVESR---------KHTPSSAIQ 135 + ++ + + KIT H+ K+ ++ + Sbjct: 129 -----KKTWRDDIARFEHWKHLHTKPIDKITGVHLHQVQAKLLATEYRPGKKYAAATVDR 183 Query: 136 FLTSMRVLFKWAVR---QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 + M+ + K A R Y+ L R T ++ + ++ + Sbjct: 184 TIALMKTVLKEAYRLLDIPYIGDKVSLINPDNMRTRYLTMEETAAVIRTSRDYYCRVTGN 243 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTIITVELPDGFMKLLAM 247 +A +G R S+ + + + K + T+ + L Sbjct: 244 FIALL--FLTGCRDSELRTRKWKDISLIDKTMFVPDTKNGSSMTVPLTPFMVELFRELLN 301 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN----KSAHGVRKFSATISADAGAT 303 + K++ + +Q F +AG+ H R AT + G Sbjct: 302 MRQKGNPYVFFGRKERSHISQPRNAFARIKERAGIKNPHEVCFHVARHSFATNLIENGVD 361 Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 + K + + Y K + + L +S +SSV+ P Sbjct: 362 VLTVQRLMNHKDLSSTQKYVKHSQQKLL--NSSDTLSSVLKEQAP 404 >gi|312977299|ref|ZP_07789047.1| integrase/recombinase XerC [Lactobacillus crispatus CTV-05] gi|310895730|gb|EFQ44796.1| integrase/recombinase XerC [Lactobacillus crispatus CTV-05] Length = 270 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 39/236 (16%), Positives = 84/236 (35%), Gaps = 17/236 (7%) Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 G R+ + + RK SS ++ ++S+ + + R++ VAI+P + + Sbjct: 16 GWTKVRERDIQVYLQHLAERKLARSSQLRKMSSLHSFYHFLTRRKLVAIDPTQGITLRRG 75 Query: 167 KTEGIRPWTKEDMQQFKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222 + + + + + +++Q + FE +G+R S+ + L ++ Sbjct: 76 EKKLPQFFYQPELKQVFDSLKGNKPLTMRNLAMFELFYATGMRVSEVSNLTLNQLDLDLQ 135 Query: 223 SI-KTQKTGTIITVELPDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSI 271 +I K V D K L ++ F+NN + + Sbjct: 136 TILVHGKGNKDRYVAFDDKTKKSLIAYLENARPLLLKNDDEQHVFLNNQGTGITSRGIET 195 Query: 272 WFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 + +AG+ H +R AT + GA + G ++ + YT Sbjct: 196 VMQKTFNQAGISGKVHPHELRHSFATAMLNNGADLRSVQELLGHSSLSATQIYTHV 251 >gi|225378419|ref|ZP_03755640.1| hypothetical protein ROSEINA2194_04087 [Roseburia inulinivorans DSM 16841] gi|225209734|gb|EEG92088.1| hypothetical protein ROSEINA2194_04087 [Roseburia inulinivorans DSM 16841] Length = 328 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 32/262 (12%), Positives = 78/262 (29%), Gaps = 12/262 (4%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHT 129 + + + + + I +++ Q++ G +T ++ ++ + Sbjct: 52 DYLEVFLSAKRIEGCSEKTLIYYKNTIQQMLDSIGKSVCTIVTEDLRTYLAEYQREKQSS 111 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + F W ++Y+ +P + R K + +T E ++ + + Sbjct: 112 KVTIDNIRRIFSSFFAWLEDEDYIIKSPVRRIHRIKAASTIKETYTDEQLESMRD-NCDN 170 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248 + + L +G+R + + + I K V L Sbjct: 171 PRDLALIDILASTGMRVGELVLLNRDDISFDERECIVFGKGDKERMVYFDARTKIHLQNY 230 Query: 249 PIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301 + +M + + K + K H R+ AT++ D G Sbjct: 231 LDSRLDGNEALFVSLKAPYNRMKIGGIELRLREIGKKLNIEKVHPHKFRRTLATVAIDKG 290 Query: 302 ATAHELMATYGWKTVDQAETYT 323 +L G + +D Y Sbjct: 291 MPIEQLQKLLGHQRIDTTLQYA 312 >gi|108805035|ref|YP_644972.1| phage integrase [Rubrobacter xylanophilus DSM 9941] gi|108766278|gb|ABG05160.1| phage integrase [Rubrobacter xylanophilus DSM 9941] Length = 378 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 46/342 (13%), Positives = 97/342 (28%), Gaps = 40/342 (11%) Query: 21 IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK 80 + Y G + + Y L + R K T+ + + K Sbjct: 23 VRYTVETPSGTKRKTAYGKTR---AEVRDKLAKAMSDRADGLLYDDKNMTVGEYLDRWLK 79 Query: 81 SAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQF 136 + GS+ ++ +E + G RK+T H+ + + R + P+S + Sbjct: 80 GSVRGSVRQSTFDRYEIAVRVHLKPALGRHKLRKLTPAHVAALYQDRLDAGYAPASVNKL 139 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196 ++ AVR V N V+ P+ + + G + + Sbjct: 140 HVTLHKALDQAVRWHMVPRNVAEVVKAPRPTAREEMRTLSAGETRRLLEAARGDRLEALY 199 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT----------------IITVELPDG 240 + +G+R + Q + ++ ++T T T+ L Sbjct: 200 VLAVTTGMRQGELLALKWQDVDLENATVSVRRTITKSGGRLLLGEPKTSKGRRTIHLTGP 259 Query: 241 FMKLLAMTPIGKETFFINNDKQKM--------------NATQFSIW-FKAKATKAGVNK- 284 ++ L + + N + F KA + + Sbjct: 260 AVQALREHLSRQMQEIQHLGDLYRDEGFIFTSESGTLINPSNLRQRSFTPLLKKARLPQI 319 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKG 325 H +R AT+ + G + +TY+ Sbjct: 320 RFHDLRHTCATLLLSRNVHPKYVQELLGHSNIAITLDTYSHV 361 >gi|89894317|ref|YP_517804.1| hypothetical protein DSY1571 [Desulfitobacterium hafniense Y51] gi|219668726|ref|YP_002459161.1| integrase family protein [Desulfitobacterium hafniense DCB-2] gi|89333765|dbj|BAE83360.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219538986|gb|ACL20725.1| integrase family protein [Desulfitobacterium hafniense DCB-2] Length = 327 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 30/310 (9%), Positives = 85/310 (27%), Gaps = 50/310 (16%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD--------------YRKITTKHIRSGV 123 Y + + +++ ++ ++ D+ ++I + + + Sbjct: 16 YINHLGVINRSPHTQKAYAQELFLFLKFICDYKPGFPPSPSSLTIGHLQQIQHTDVEAYL 75 Query: 124 ES----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW----- 174 RK+ + + +++ +++ +R++ + + + + + + + Sbjct: 76 NWARTQRKNGVRALARKQAAIKSFYRYLLREDLILKDITIKLNPISQNQKAPKALEPEQI 135 Query: 175 ----------TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 T Q K + F + +GLR S+ +Q + N Sbjct: 136 ADLVDIIETGTGLSEGQLKYHLYTEKRDYAIFLTFIGTGLRLSELYGLNLQSIDFNKGCF 195 Query: 225 -KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK---------QKMNATQFSIWFK 274 +K + + + ++ +M+ K Sbjct: 196 AVIRKGNKETNIYFNTEVATAIQDYIKNERPRYMLQHTEALFLSIQGNRMSKRAIQDLIK 255 Query: 275 AKATKAG------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD- 327 SAH +R AT+ + G Y K D Sbjct: 256 KYMAILQNFGHNTEGYSAHKLRSTFATLLLRETENLAIVQDALGHSDPRTTRIYAKVLDE 315 Query: 328 RIRLGIKNSR 337 ++R + + Sbjct: 316 QLRRAADHIK 325 >gi|300115640|ref|YP_003762214.1| integrase family protein [Nitrosococcus watsoni C-113] gi|299541582|gb|ADJ29893.1| integrase family protein [Nitrosococcus watsonii C-113] Length = 310 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 43/292 (14%), Positives = 95/292 (32%), Gaps = 37/292 (12%) Query: 77 EYRKSAHW-GSLAVNSRISFESYFD---QIIRKSGDFDYRKI---TTKHIRSGVESRKHT 129 ++ H+ + + ++ S + + ++G + T K + + R Sbjct: 14 DFLAHLHYAKGYSQGTCYAYNSDLGIWGRWLEEAGKDWCQATHADTEKFVAWQMRERGAK 73 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ--------- 180 + + + +KWA++ V +P ++PKR KE+ Q Sbjct: 74 AHIVARRSSCLGSFYKWAMKNALVESDPIYLADKPKRPYRIPVWLEKEEQQALQEATQRI 133 Query: 181 ----------QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----- 225 + + + + F +L SGLR S++ V+ ++ K Sbjct: 134 DNLPENIFGRTQEHIKAVRRRYDVLFGLILNSGLRISEALAVKVRDVRVMNGIAKSVRII 193 Query: 226 ---TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 ++ + F L F + + + +AG+ Sbjct: 194 GKGNRERLVPLPEAFGQVFGAWLQGREGDDFVFAKAPGGKPPGPHAARAYLRRLIERAGI 253 Query: 283 NK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 +K + H +R AT ++GA ++ A G + + YT R+ Sbjct: 254 DKPVTPHKLRHTYATRLLESGAELVDIQALLGHVDLSTTQIYTH-VSEERMA 304 >gi|149199670|ref|ZP_01876702.1| Integron integrase; Phage integrase; Phage integrase N-terminal SAM-like domain [Lentisphaera araneosa HTCC2155] gi|149137187|gb|EDM25608.1| Integron integrase; Phage integrase; Phage integrase N-terminal SAM-like domain [Lentisphaera araneosa HTCC2155] Length = 424 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 33/309 (10%), Positives = 90/309 (29%), Gaps = 57/309 (18%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESRKHT 129 L+ E+ K+ + + S+ ++ ++ + + + + V Sbjct: 108 FDGLLVEFEKAMRLQQKSYRTIQSYVTWVERYLAHAKTHYKESDYVRDFLSHLVMRYNVA 167 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 S+ Q L ++ + FK+ ++ + ++ L ++ T +++++ S + Sbjct: 168 ASTQNQALCALVLFFKYILKCDLGDVSGSLRSKK---DVRLPVVLTVDEVREILSAST-- 222 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGV------------------------------QHLQN 219 + +L + + GLR S+ R + + + Sbjct: 223 GKEQLMMKLIYGGGLRKSECLRLRIKDLDFSRGSLNIRDGKGNKDRQTLLSRDLKEQIDC 282 Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND------------------- 260 ++ ++ + L + Sbjct: 283 HLNEVRKLFEIDRESEVAGVFLPNALIKKYPNAGRKWAWFWLFPSEKLSIDPMTSQKTIR 342 Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 + + S + KA G+ K + H +R AT + G + G + + Sbjct: 343 RHHNSGQMLSRFLKATCEDLGIKKQCTVHTLRHSFATHLLERGTDLRTIQELLGHEDIST 402 Query: 319 AETYTKGAD 327 + YT Sbjct: 403 TQIYTHVLS 411 >gi|255011581|ref|ZP_05283707.1| putative integrase [Bacteroides fragilis 3_1_12] gi|313149409|ref|ZP_07811602.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313138176|gb|EFR55536.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 407 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 47/343 (13%), Positives = 88/343 (25%), Gaps = 32/343 (9%) Query: 23 YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY-INSPRKKPTTLKWLISEYRKS 81 Y K R + + + + Y S Sbjct: 74 YLIDKPRTPAERQQNKETLELAMRIRAEREQEFKESMLGYRLKKDRAVNFLDYFQAYINS 133 Query: 82 AHWGSLAVNSRISFES---YFDQIIRKSGD--------FDYRKITTKHIRSGVESRKHT- 129 ++ F + + IT + + V + Sbjct: 134 Y--------TKKDIRMVQIAFSRFKDFLKEQYPMNEFSIKPELITKEMMEQFVAYLQSRS 185 Query: 130 -PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187 A + + ++A+ + + +PC SV + + Q Sbjct: 186 VGEGAKSIYQRFKKVIRYAIDHDVMLKDPCKSVTCKVDSQMLRKDVLSPEEIQKLMACHY 245 Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL- 244 E R AF F LY GLR D +++ +K +++ T + L Sbjct: 246 DNENPTIRRAFIFCLYCGLRFCDVKDLTYKNVDYANRLLKFEQSKTKGHSASSGVVIPLN 305 Query: 245 --LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 L K +AG++K S H R A + Sbjct: 306 DGLLSIIGEAPADKNCLIFDLPTYESCCKSVKRWVKRAGIDKHISWHCARHSFAVNILNN 365 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343 GA + + G + E YT+ D +L + + + Sbjct: 366 GANIKTVASLLGHNGLKHTEKYTRAVD--KLKEEAINSLPELK 406 >gi|295134062|ref|YP_003584738.1| transposase [Zunongwangia profunda SM-A87] gi|294982077|gb|ADF52542.1| putative transposase [Zunongwangia profunda SM-A87] Length = 410 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 44/288 (15%), Positives = 100/288 (34%), Gaps = 29/288 (10%) Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFE---SYFDQIIRK---SGDFDYRKITTKHIRSG 122 +L+ L Y S++ ++ ++ Y + +R DF + I+ Sbjct: 108 RSLQELFE-YHNEISRHSISAHTLRHYKVTQGYLQKFLRAKFNLEDFRLIYLNFSFIKDF 166 Query: 123 ----------VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 RK ++A++ L +R + A E++ +P + + + Sbjct: 167 EFFIKSYQPTDHQRKMGHNTAMKHLQRLRKMVTMAYHHEWIPKDPFVRFKS-SYVKKRRE 225 Query: 173 PWTKEDMQQFKSFWSEGSQPRL---AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229 T+E++Q + F S ++ + F F Y+GL D + + ++ + + +T Sbjct: 226 FLTREELQSIEDFQSSINRLNIVKDIFLFSCYTGLSYIDITKLTMDNIGMDFDGNQWIET 285 Query: 230 GTI-----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284 + + L + +L +T + + + + + K A G+ K Sbjct: 286 ERQKTKTALKIPLLNQARDILKRYQDHPKTVHSKTLLPRYSNQKLNSYLKEIADFCGIKK 345 Query: 285 --SAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + H R AT G + G + + Y + D+ Sbjct: 346 HLTFHIARHTFATTITLTNGVPIETVSKLLGHTKLATTQIYARVVDKK 393 >gi|254295225|ref|YP_003061248.1| integrase family protein [Hirschia baltica ATCC 49814] gi|254043756|gb|ACT60551.1| integrase family protein [Hirschia baltica ATCC 49814] Length = 402 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 45/362 (12%), Positives = 106/362 (29%), Gaps = 40/362 (11%) Query: 14 ERTRHGKIIYYFRKGHGRRIR---------LPYPHESTFIPAYMSALTGSTPKREYINSP 64 GK++++ R+ L P + + + L + Sbjct: 33 RVQPSGKVVFFVRQSRFTETGTTLDITIGALGQPWTPSNARSQATLLLLQLKQGIDPRKK 92 Query: 65 RKK-PTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSG 122 + T+ + + + ES F I G +++ T HI + Sbjct: 93 TNEINYTIASYFEVFCGQTNGRK-KPRTIKLEESLFKRHISPHLGKVKLKELNTTHISNF 151 Query: 123 VES---------RKHTPS----------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163 + K P +A + + + AV+ + NP +V + Sbjct: 152 MSKVANPDKIIVEKTKPRGKAVVSGGKPTANRAHDILSAMLNHAVKAGLLDKNPAKNVAK 211 Query: 164 PKRKTEGI---RPWTKEDMQQFKSFWSEGSQPRLAFEFL--LYSGLRCSDSCRAGVQHLQ 218 + + + + Q+ + S+G+ +++G R S+ +++ Sbjct: 212 FRTEKKERFLTEVEIQRLGQELRQAGSDGTNTYAIEALKVLMFTGARKSEILSLRWEYID 271 Query: 219 NNIFSIKTQKTGTIITVEL-PDGFMKLLAMTPIGKETFFINNDKQKMNA-TQFSIWFKAK 276 + + + P + +L P ++ T + Sbjct: 272 WQRSLANLPDSKNDMKSIVLPSVVISILNNLPNKGTNGWVFPSNDGNTHFTGLQKIWNRI 331 Query: 277 ATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIK 334 T A + + H +R A++ A G + + L + Y AD +R ++ Sbjct: 332 RTNANLRDVRIHDLRHTFASVGAAEGKSLYILGKALTHANPATTQRYAHLADDPLRHAVE 391 Query: 335 NS 336 Sbjct: 392 AI 393 >gi|148264912|ref|YP_001231618.1| phage integrase family protein [Geobacter uraniireducens Rf4] gi|146398412|gb|ABQ27045.1| phage integrase family protein [Geobacter uraniireducens Rf4] Length = 279 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 33/266 (12%), Positives = 89/266 (33%), Gaps = 17/266 (6%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132 L + + ++ S+ + + ++ +R + Sbjct: 3 DLRRRMMEDLQLAGYSARTQKSYLDAVRGLAKYYMRSP-DLLSEDDVRGFFLHLLKVRKA 61 Query: 133 AIQ----FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 A +L+ ++ F+ +++++ + +P + ++++++ + Sbjct: 62 ARSTFTIYLSGIKFFFETTLQRKW----SVFGITKPAKSKRLPVVLSRKEVRTLLKSI-K 116 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLA 246 + ++A + GLR S+ R V+ + + ++ K V LP ++LL Sbjct: 117 NPRVKMALTIIYACGLRLSEGARLKVKDIDSGRKLLWVRDGKGMKDRCVPLPKRPLELLQ 176 Query: 247 MTPIGK---ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAG 301 + + +N F+ K+ + K+A H +R AT + G Sbjct: 177 THYRLFGAGSEYLFPSGDGHINICTIQTAFRVAVRKSDIGKTATVHTLRHSYATHLLENG 236 Query: 302 ATAHELMATYGWKTVDQAETYTKGAD 327 + L G ++ Y + Sbjct: 237 EDSATLKEILGHSSITTTNIYLHMTE 262 >gi|330825997|ref|YP_004389300.1| integrase family protein [Alicycliphilus denitrificans K601] gi|329311369|gb|AEB85784.1| integrase family protein [Alicycliphilus denitrificans K601] Length = 414 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 47/378 (12%), Positives = 97/378 (25%), Gaps = 53/378 (14%) Query: 10 FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 F+ R R G+ Y G + + A + ++ Sbjct: 42 FLVAYRLRDGRKNRYV-IGRTPPLTPAQARDEAKKVLGDVARGIDPNDDKRQQRREERKP 100 Query: 70 TLKWLISEYRK--SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR- 126 TL+ I E+ + A + F + D +T R Sbjct: 101 TLEAFIDEHYAPWALAHLGTAEKTLARMRVAFK----EHLDKRLDSLTAWQFDKWKSERL 156 Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW---------- 174 P+S + L S+R AV E + +P V++ K + + Sbjct: 157 KSGLKPTSVNRELASLRSALTKAVEWELIPEHPLRKVKQAKVDEDHRVRFLSDAEETRLR 216 Query: 175 ----------TKEDMQQFKSFWSEG-------------SQPRLAFEFLLYSGLRCSDSCR 211 ++ + G R + +GLR + + Sbjct: 217 EVLDAREANARAARVRHNEWRMQRGHEARPLIAEGEFIDHIRPMILVTINTGLRRGELFK 276 Query: 212 AGVQHLQNNIFSIKTQ----KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT 267 + +K + K+G V L + +LA + Sbjct: 277 LKRSDIDMEKRMLKVRAAAAKSGKSRFVPLNEEAAAMLARWMDQHPGEDEELVFPGKDGA 336 Query: 268 QFSI---WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + + + + + H +R A+ AG + + G + Y Sbjct: 337 PLTNVDSAWGSIVKAVKLQDFHWHDMRHHFASRLVMAGVDLNTVRELLGHADLKMTLRYA 396 Query: 324 KGADRIRLGIKNSRRISS 341 A + + ++ Sbjct: 397 HLAPEHK--AQAVAKLVR 412 >gi|291528111|emb|CBK93697.1| Site-specific recombinase XerD [Eubacterium rectale M104/1] gi|291540208|emb|CBL13319.1| Site-specific recombinase XerD [Roseburia intestinalis XB6B4] Length = 328 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 31/262 (11%), Positives = 79/262 (30%), Gaps = 12/262 (4%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHT 129 + + + + + I +++ Q++ G +T ++ + ++ + Sbjct: 52 DYLEVFLSAKRIEGCSEKTLIYYKNTIQQMLDSIGKSVCTIVTEDLRTYLAEYQKEKQSS 111 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + F W ++Y+ +P + R K + +T E ++ + + Sbjct: 112 KVTIDNIRRIFSSFFSWLEDEDYIIKSPVRRIHRIKAASTIKETYTDEQLESMRD-NCDN 170 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248 + + L +G+R + + + I K V L Sbjct: 171 PRDLALIDILASTGMRVGELVLLNRDDISFDERECIVFGKGDKERMVYFDARTKIHLQNY 230 Query: 249 PIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301 + +M + + + + K H R+ AT++ D G Sbjct: 231 LDSRTDNNEALFVSLKAPYNRMKIGGIELRLREMGKRLNIEKVHPHKFRRTLATVAIDKG 290 Query: 302 ATAHELMATYGWKTVDQAETYT 323 +L G + +D Y Sbjct: 291 MPIEQLQKLLGHQRIDTTLQYA 312 >gi|119961787|ref|YP_948168.1| tyrosine recombinase XerC [Arthrobacter aurescens TC1] gi|119948646|gb|ABM07557.1| putative tyrosine recombinase XerC [Arthrobacter aurescens TC1] Length = 311 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 38/291 (13%), Positives = 92/291 (31%), Gaps = 30/291 (10%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTP- 130 Y + + ++ ++ S + ++ + G + R++ +R + ++ Sbjct: 20 FRRYLEGECAR--SAHTVRAYLSDVESLLGFAVQEGVQELRQLELGSLRRWLGAQSEAGM 77 Query: 131 --SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--- 185 ++ + + R WA+R+E + +P + ++ PKR ++ + + Sbjct: 78 ARATLARRAATARSFTGWALREELIETDPAVRLQAPKRDKSLPGVLQQQQVSRMVDDLNT 137 Query: 186 -----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239 + R E L +G+R + + L + +++ K TV Sbjct: 138 AAADGGPMALRNRAMVELLYATGVRVGELAGLDIDDLDPDRRTVRVLGKGNKERTVPFGV 197 Query: 240 GFMKLLAMTPIGKETFFINNDKQK----------MNATQFSIWFKAKATKAGVN--KSAH 287 + + ++ Q G H Sbjct: 198 PAAVAVDDWLRRGRPAVVGATSGPALFLGVRGNRVDPRQIRAVVSELLQALGDTSATGPH 257 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSR 337 +R +AT D GA + G ++ + YT DR+R + + Sbjct: 258 ALRHSAATHLLDGGADLRAVQEILGHSSLATTQIYTHVSVDRLRKSYQQAH 308 >gi|16763108|ref|NP_458725.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29144590|ref|NP_807932.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56414704|ref|YP_151779.1| phage integrase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197363631|ref|YP_002143268.1| phage integrase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|213426678|ref|ZP_03359428.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213586423|ref|ZP_03368249.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213855469|ref|ZP_03383709.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|25301805|pir||AI1039 phage integrase [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16505416|emb|CAD06766.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi] gi|29140228|gb|AAO71792.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56128961|gb|AAV78467.1| phage integrase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197095108|emb|CAR60654.1| phage integrase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 341 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 46/339 (13%), Positives = 90/339 (26%), Gaps = 47/339 (13%) Query: 14 ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + +GK + Y G+R+R A+ + K+ ++ + L Sbjct: 4 RKQPNGKWLCECYPNGRDGKRVR-KQFATKGEAIAFENHTMDEVNKKPWLGEKEDRRH-L 61 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESR-- 126 +I ++ SL + + + I GD ++T E+R Sbjct: 62 SEVIEQW------HSLYGQTLADPKRLLAKLSIICNGLGDPIASELTAGDFTKYREARLK 115 Query: 127 ------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 P + ++ +F + + L+ + EG + Sbjct: 116 GEVKNEDGVLMSPVKPRTVNLEQRNLSSVFGTLKKLGHWPAPNPLAGLPTFKIAEGELAF 175 Query: 175 TKEDMQQFKSFWSEGSQ---PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 + + SQ + + L +G R S++ L + K Sbjct: 176 LAPEEIKRLLDACADSQSPSLLMIAKICLATGARWSEAENLQGHQLSKYRITYTKTKGKK 235 Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK----SAH 287 TV + L T F+ +AG+ H Sbjct: 236 NRTVPISQELYDELPKNRGKLFTPC-------------RKSFERAVKRAGIELPEGQCTH 282 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 +R A+ G L G + Y A Sbjct: 283 VLRHTFASHFMMNGGNILVLRDILGHADIKMTMVYAHFA 321 >gi|327183268|gb|AEA31715.1| integrase [Lactobacillus amylovorus GRL 1118] Length = 383 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 53/366 (14%), Positives = 108/366 (29%), Gaps = 48/366 (13%) Query: 11 VTKERTRHGKIIYYFRKGHGRRIRLPYPH--ESTFIPAYMSALTGSTPKREYINSPRKKP 68 + + T G+ Y F G+ + AL + + P Sbjct: 5 IKEYTTPSGEKRYKFLIYVGKDETTGRTIQIKKQGFKTEKQALECYLNYKLKVVKGEYVP 64 Query: 69 TT-----LKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSG 122 T L L + K ++ ++ +S E F + I+++ G K+T + Sbjct: 65 VTKRKLRLNDLYKMWVKLYK-KTVQESTFVSTEKIFENHILKQLGSTYLNKLTVSQCQRA 123 Query: 123 VESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED--- 178 V + P + +F+ L + + E + NP V PK + + + Sbjct: 124 VNTWADVAPKTFKRFVFYASKLINYGITMELMKKNPMKKVILPKIERDNKKFDNFYSKDE 183 Query: 179 -MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI------------- 224 + + F L YSG+R + + +I Sbjct: 184 LNTFLNDAKGYNFRYFMFFRLLAYSGMRKGECLALKWSDIDFKNNTIDINKSLASGENNR 243 Query: 225 ----KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF----------- 269 + + ++ T+++ M L ++ + ++ Sbjct: 244 LYLSPCKTSSSVRTLDMDTETMHYLKEWRTKQQKEMLKLGLNFLSNDNLVFANSEGNYTV 303 Query: 270 ----SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYT 323 W A K G+ HG R A++ DAG + ++ G + YT Sbjct: 304 LSKPQRWDNAICKKFGLRHIKVHGFRHTHASLLFDAGVSMKDVKERLGHSDITTTMNIYT 363 Query: 324 KGADRI 329 + Sbjct: 364 HVTKKK 369 >gi|20807762|ref|NP_622933.1| integrase [Thermoanaerobacter tengcongensis MB4] gi|34222924|sp|Q8RAB1|XERDL_THETN RecName: Full=Tyrosine recombinase xerD-like protein gi|20516317|gb|AAM24537.1| Integrase [Thermoanaerobacter tengcongensis MB4] Length = 290 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 35/260 (13%), Positives = 89/260 (34%), Gaps = 20/260 (7%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVES 125 + ++ E+ + L+ N+ S+ +Q + + +K T + ++ Sbjct: 3 ESVVGEFLEFLKKNKRLSKNTLESYSRDVEQFLTYMNEHGINFCSAKKSTIVNYLYFLKQ 62 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + + ++ + L+S++ + + ++ + +P + PK + + T E + SF Sbjct: 63 QGKSQATISRALSSIKAFYHYLFAKKKIEEDPSYGINAPKVEKKEPVTLTVEQVDMLLSF 122 Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 +G + + E + SGL+ S+ ++ + I + + + Sbjct: 123 DFGKDEKGLRDKALIELMYASGLKVSEVISLKIEDVNLASGYIVVRSG-KERVIPIGSYA 181 Query: 242 MKLLAMTPIGKETFFI-------NNDKQKMNATQFSIWFKAKATKA--GVNKSAHGVRKF 292 + L N +++ K A K G+ + + +RK Sbjct: 182 VAALQEYIEKGRKPRKGEKALFLNLRGKRLTRQGCWKIIKEYADKISPGLPLTPNILRKS 241 Query: 293 SATISADAGATAHELMATYG 312 A GA + G Sbjct: 242 FAQHMLQNGADLKTVQEMLG 261 >gi|326406553|gb|ADZ63624.1| phage integrase [Lactococcus lactis subsp. lactis CV56] Length = 374 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 42/353 (11%), Positives = 99/353 (28%), Gaps = 44/353 (12%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTP-KREYINSPRKKPTTLK 72 + R Y + RL ST A A+ + K+ +I P K+ + Sbjct: 4 YQKRGKTWQYSISRTKQGLPRLTKGGFSTKSDAQAEAMDIESKLKKGFIVDPIKQEIS-- 61 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132 E+ + ++ + +E + + +IT + + T + Sbjct: 62 EYFKEWMELYKKNAIDEMTYKGYEQTLKYLKTYMPNVLISEITASSYQRVLNKFAETHAK 121 Query: 133 AI------QFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 A + S++ L + ++++ K + + + + Sbjct: 122 ASTKGFHTRVRASIQQLIEEGRLQKDFTTRAVVKGNGNDKAEQDKFVNFDEYKQLVDYFR 181 Query: 186 WSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------- 234 S + +G+R S++ + + IK +T Sbjct: 182 NRLNSNYSSPTMLFIISITGMRASEAFGLVWDDINFDNNVIKCHRTWNYRNKVGGFKKPK 241 Query: 235 -------VELPDGFMKLLAMTPIG-------------KETFFINNDKQKMNATQFSIWFK 274 + + D M+LL + + ++ + + Sbjct: 242 TDAGIRDIVIDDESMQLLKDFREQQKTLFESLGIKPIHDFVCYHPYRKIITLSALQNTLD 301 Query: 275 AKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 K + + HG+R A++ G + G +V +TY Sbjct: 302 HALKKLKISTPLTVHGLRHTHASVLLYHGVDIMTVSKRLGHASVAITQQTYIH 354 >gi|297620912|ref|YP_003709049.1| putative integrase [Waddlia chondrophila WSU 86-1044] gi|297376213|gb|ADI38043.1| putative integrase [Waddlia chondrophila WSU 86-1044] Length = 367 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 52/352 (14%), Positives = 107/352 (30%), Gaps = 32/352 (9%) Query: 16 TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75 TR R I + + + + + TL LI Sbjct: 18 TRGSYYRVQIRLKGCPHIS-KNFDSFQKAKDWKRKTIAAIQSGQPYETTEMRRLTLSDLI 76 Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP----- 130 + S + + + G ++ I + K P Sbjct: 77 DRFISSDLLKLRNHKTIKG---HLSWWKDEIGYCILSQLREDIIAQARDKLKEQPDKWGR 133 Query: 131 ----SSAIQFLTSMRVLFKWAVRQEYVAIN-PCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 ++ ++L S+ + AVR+ + P +V + R +KE+ +Q Sbjct: 134 SRSSATVNRYLCSLGSVINLAVREWRLLPYSPLKNVRKLPEPRGRERFLSKEEKKQLLLA 193 Query: 186 WSEGS--QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGF 241 S L +G+R + +H+ S+ K V +PD Sbjct: 194 CQNSSCKLLYPIVLLALSTGMRKGEILNLKWKHVDLTNGSVTLEHTKNNDRRVVPVPDIS 253 Query: 242 MKLLAMTPIGKETF------FINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294 + +L F ++ + K+ N F +KA +A + + H +R Sbjct: 254 LNILKSLRAHCAHFGELTDEYVFSQKKGHNPIDFRASWKAALKQAKIKDFKFHDLRHDFI 313 Query: 295 TISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVVDS 345 T ++ H + G ++ Y+ LG+ +++ S+ + S Sbjct: 314 TTLSELKYPLHVISKIVGHRSHTITATRYSH------LGLDHAKEASADIGS 359 >gi|257870041|ref|ZP_05649694.1| phage integrase [Enterococcus gallinarum EG2] gi|257804205|gb|EEV33027.1| phage integrase [Enterococcus gallinarum EG2] Length = 383 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 47/345 (13%), Positives = 99/345 (28%), Gaps = 45/345 (13%) Query: 29 HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA 88 G+ I+ T A AL+ K + + + + + + ++ Sbjct: 28 TGKEIKTNRSGFKT-RQAANLALSRLLLKSKSADFIFDSNLHFEKVAEMWLEQYK-NTVK 85 Query: 89 VNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA 147 ++ + + II G KIT + ++ V + +F++A Sbjct: 86 ASTLTAQKFVLKKHIIPHFGKIPINKITIPYCQAKVNHWFSYYKKFNNLIMITSQIFQYA 145 Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS--------FWSEGSQPRLAFEFL 199 + + NP V RPKR+ + + K L F L Sbjct: 146 ISVRLLTNNPMNGVIRPKRQMDIDQEDYAAPYYSQKQLITFLDKAKKQLPFSEFLMFRIL 205 Query: 200 LYSGLRCSDSCRAGVQHLQ-----------------NNIFSIKTQKTGTIITVELPDGFM 242 ++GLR + + + + + ++ + L D + Sbjct: 206 AFTGLRKGELHALRWKDISFGRGTLSVKQTVATADGWKLIFQTPKTRKSVRELSLDDETL 265 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQF---------------SIWFKAKATKAGVNK-SA 286 KLL + ++ F + N Q + + + Sbjct: 266 KLLKRWKLQQKELFFKLGIKHDNEEQLLFTSEENKVLYLDFLNHRLTKILKDNNLEYMTV 325 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330 HG R ++ ++G E+ G + Y D+ R Sbjct: 326 HGFRHTHCSLLLESGVPIKEVQERMGHTDIKTTMNVYAHVTDKKR 370 >gi|330443758|ref|YP_004376744.1| tyrosine recombinase XerD [Chlamydophila pecorum E58] gi|328806868|gb|AEB41041.1| tyrosine recombinase XerD [Chlamydophila pecorum E58] Length = 321 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 35/265 (13%), Positives = 82/265 (30%), Gaps = 24/265 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMR 141 L + +++ + + +I+ + VE ++ + L +++ Sbjct: 44 RGLCQQTILAYSQDISLFLLLNKILSTEEISQNSVCYFVEKLHERNEAEATLARRLIALK 103 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--------QPR 193 V F + + + P + E PK + ++++Q + Sbjct: 104 VFFIFLKDAQLLKHPPII--EHPKIWKRLPTVLSPQEVEQLLLTPKRAKHLSPLIVARDT 161 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII----------TVELPDGFMK 243 L +G+R S+ C + + + + + + T + F Sbjct: 162 AILYTLYSTGIRVSELCDLEIGDVNDEFIRVTGKGSKTRLVPLGSLARDAIDAYLSPFRD 221 Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA-GVNKSAHGVRKFSATISADAGA 302 L+ +E F++ +K+ + A + S H +R AT + A Sbjct: 222 LMRQKSPKEEHLFLSFRGKKLERSCIWRRIHEYAKQITSKPVSPHSLRHAFATHLLNNKA 281 Query: 303 TAHELMATYGWKTVDQAETYTKGAD 327 + G + E YT A Sbjct: 282 DLRVIQEMLGHSRISSTEIYTHVAS 306 >gi|317506912|ref|ZP_07964684.1| phage integrase [Segniliparus rugosus ATCC BAA-974] gi|316254840|gb|EFV14138.1| phage integrase [Segniliparus rugosus ATCC BAA-974] Length = 395 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 59/375 (15%), Positives = 116/375 (30%), Gaps = 59/375 (15%) Query: 24 YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS-A 82 Y G+R R + ++ A L + + + P ++K ++ +R + Sbjct: 25 YLDPKTGQRKRTSFYADT--AKAAREKLKNARERLDKGAPPTDAKASVKEWMAHWRATTL 82 Query: 83 HWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESRKHTP---------- 130 N+ +E I K G K+ HI + + K+ Sbjct: 83 QASDRKANTIELYERLSIHHIETGKFGTLTLDKLKPSHIEALIVHLKNAGKAQTGDDGKK 142 Query: 131 -------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 S+ T +R AVR +A NP V+RPK + + + D+ + Sbjct: 143 NLVGLAESTVRTTYTVLRSALDTAVRDGLLAENPATKVKRPKVERKEAVHFEAADLAKIL 202 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----------------- 226 ++ S+ + SG+R ++ ++ K Sbjct: 203 KA-ADSSRYHTTLLLIAASGIRRGEAAGLRWSDVELKEQDGKFTVRKTAARIGGELVLTD 261 Query: 227 -QKTGTIITVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSI 271 + + T+ L G + L F ++ Sbjct: 262 PKTKTSRRTIPLSQGMVTALKAHRKRQLEERLRAGDQWKDNGMVFTTEFGTIVDPRNLLR 321 Query: 272 WFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRI 329 KA A KAG+ K + H VR +A ++G + G ++ + Y +D+ Sbjct: 322 VVKAAAKKAGIEKANVHAVRHSAAMAWLESGVHIKAVADLLGHSSIAITGDIYGHTSDQA 381 Query: 330 RLGIKNSRRISSVVD 344 +S+V+ Sbjct: 382 --ARSAVDGLSAVLG 394 >gi|94310217|ref|YP_583427.1| phage integrase [Cupriavidus metallidurans CH34] gi|93354069|gb|ABF08158.1| tyrosine-based site-specific recombinase [Cupriavidus metallidurans CH34] Length = 331 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 35/313 (11%), Positives = 87/313 (27%), Gaps = 36/313 (11%) Query: 70 TLKWLISEYR--KSAHWGSLAVNSRISFESYFDQII----RKSGDFD----YRKITTKHI 119 +L L+ + + L+ ++ S+ F ++ + G I Sbjct: 5 SLPALVQRFFTQRLLEQQGLSSHTVASYRDTFRLLLAFATKHIGRAPSKLRIEDFDVSLI 64 Query: 120 RSGVESRKH----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 ++ +H + + L ++ F++ E C + K P Sbjct: 65 EEFLQHLEHGRGNSVRTRNTRLAAVHAFFRFVAVSEPALFLLCQRILAIPSKRCEHGPVE 124 Query: 176 KEDMQQ-------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-------QNNI 221 + G++ R + +GLR S+ Q + + Sbjct: 125 FLTESEAAALVGAPDVRNWIGNRDRTLLLVAVQTGLRNSELTALRRQDVALGTGAHVRCL 184 Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 + + + + LL + F ++ ++A A A Sbjct: 185 GKGRKMRCTPLRPDVVAVLKQWLLYQPGEPGDPVFPSSRGGHLSADALQQLVSRNAETAR 244 Query: 282 VNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 ++ + H +R +A G + G ++ + + Y +++ Sbjct: 245 LSCPSLKKKSITPHTLRHTAAMSLMHHGVDLTVIALWLGHESSETTQIYLHADMQLKERA 304 Query: 334 KNSRRISSVVDSD 346 S V + Sbjct: 305 LAHATASGVAPTR 317 >gi|157737940|ref|YP_001490624.1| phage integrase family site specific recombinase [Arcobacter butzleri RM4018] gi|157699794|gb|ABV67954.1| site-specific recombinase, phage integrase family [Arcobacter butzleri RM4018] Length = 386 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 49/381 (12%), Positives = 102/381 (26%), Gaps = 63/381 (16%) Query: 1 MTPSLRLPPFVTKERTRHGKIIYYFRKGH---------GRRIRLPYPHESTFIPAYMS-- 49 M + +L + +G ++YF ++ + S I + Sbjct: 1 MNKTKKL--GIYYNELENGDKVFYFTYKDINDLDKNGNPKKKWVNVGKYSEGIREINAVN 58 Query: 50 -------ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI 102 + +K+ L+ + + Y K S + + I Sbjct: 59 LRNEQINKMKHGEDISIVAKKKKKEFINLENIANLYFKD------KKTSEKQISKFENHI 112 Query: 103 IRKSGDFDYRKITTKHIRSGVESR--------------------KHTPSSAIQFLTSMRV 142 G+ + IT K I ++ +P + + + Sbjct: 113 NPFFGNKNIDSITKKDILDFRQNLIDGTLKYPINIQEKRNLITEAKSPQTVNGIIELFKA 172 Query: 143 LFKWAVRQEYV-AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201 ++ +++ + NPC + + K + T E++ L + L Sbjct: 173 IYNHYIKEYNLKIANPCFGISKLKTDNAREKFLTTEEINLLIEQIESNKTLWLFVKLSLS 232 Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF------MKLLAMTPIGKETF 255 +G R + + +I + T T + L Sbjct: 233 TGGRLETILNIQKKDINLTNSTITLKNLKTDETYKGFLQPDISDFLEDFLQNLKPNYYLI 292 Query: 256 FINNDKQKMNATQFSIWFKAKATKA---GVNKS-------AHGVRKFSATISADAGATAH 305 N +K N+ Q K K ++ H +R A+ A G Sbjct: 293 SFENHIEKTNSRQIQTRLKPILDKLFNKDLDARDTKNRFVIHSLRHTFASHLAINGTPIF 352 Query: 306 ELMATYGWKTVDQAETYTKGA 326 + K ++Q Y K A Sbjct: 353 TIKELMNHKDIEQTMRYAKLA 373 >gi|71275345|ref|ZP_00651631.1| Phage integrase [Xylella fastidiosa Dixon] gi|71901026|ref|ZP_00683137.1| Phage integrase [Xylella fastidiosa Ann-1] gi|71163645|gb|EAO13361.1| Phage integrase [Xylella fastidiosa Dixon] gi|71729212|gb|EAO31332.1| Phage integrase [Xylella fastidiosa Ann-1] Length = 339 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 54/329 (16%), Positives = 101/329 (30%), Gaps = 23/329 (6%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 P + G + YY+ G R P + + L + Sbjct: 12 PRFRVRPQKSGVVYYYYDHGGKPRKETPLGRDYGLAIKRWAELEHAQITPAI-------A 64 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR 126 T + + YR A N++ +++ D + I +IR ++ R Sbjct: 65 VTFRHVAERYRAEVIPTK-AYNTQRVEHRCLAPLLKFFDDPPAPFEAIKPVNIRQYLDWR 123 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + A + ++ L+ W + + +R R +D + Sbjct: 124 -TSKVIANREVSVFSHLWNW--ARSKGITDLPNPCGGIRRNKATGRDVYVDDTTYRAVYQ 180 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246 + R A + +G R SD +H+ N I KTG + + + L+ Sbjct: 181 AADQTLRDAMDLAYLTGQRVSDVVSMDERHIVNGALEICQAKTGAKLAITVTGELAVLIK 240 Query: 247 MTPIGKETFFINNDKQKM-------NATQFSIWFKAKATKAGVNK---SAHGVRKFSATI 296 K + + + + + T F T AG+ K +R +AT Sbjct: 241 RIFDRKRGMKLRSTRLIVDAKGLELSRTGLRYRFDRARTAAGIAKEVFQFRDLRAKAATD 300 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKG 325 AD + A G +V E Y + Sbjct: 301 KADLAGDIRQAQAQLGHASVTMTEHYVRK 329 >gi|268610896|ref|ZP_06144623.1| integrase family protein [Ruminococcus flavefaciens FD-1] Length = 399 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 50/383 (13%), Positives = 118/383 (30%), Gaps = 62/383 (16%) Query: 12 TKERTRHGKIIYYFRKG--HGRRIRL-PYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 TK + ++G+ F G + R+ ++S + + + + Sbjct: 11 TKFKLKNGQWRAAFFVPLHDGSKKRIYRQFRTRKEADEWLSKIKSEISAGKPVLCSDQP- 69 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVESRK 127 + ++ + ++ ++R+++ Y I R D + +T ++ + K Sbjct: 70 --FGEYLDQWLEKFGSVAIRNSTRMNYLGYLRHIQRHKIKDIKLKNLTVDDLQEFILFLK 127 Query: 128 H----------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 + + + + + AV ++ + N V+ PK T +R T+ Sbjct: 128 NAGQLDTGLPLSAKTLHNIMNMIHKALDHAVGRQLIYHNAADYVQLPKVMTPEMRVLTET 187 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ---------- 227 ++ F EG + ++A +L+ GLR + C ++ Sbjct: 188 EISGF-VAAMEGDRLQIALVLMLFCGLRLGECCALTHDDVRCKDGIYYLNISKSLNRVSN 246 Query: 228 ----------------------KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM- 264 K + E+ D + + E + ++ Sbjct: 247 FEAKAGEPKTILRLQETKTSKGKRQVPLLPEVADKVLAHIQWQKEQAEKSYGMYEENPWL 306 Query: 265 ---------NATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWK 314 + KA A G+ + H +R A+ + AG L G + Sbjct: 307 IANELGHYLDPGTVRKKLKAVAESIGITDFHPHCLRHTYASQAVKAGVPLPYLSDILGHE 366 Query: 315 TVD-QAETYTKGADRIRLGIKNS 336 + A+ Y + R + + Sbjct: 367 STAFTAKVYVSLDLQGRANAQAA 389 >gi|255020639|ref|ZP_05292701.1| Integrase [Acidithiobacillus caldus ATCC 51756] gi|254969875|gb|EET27375.1| Integrase [Acidithiobacillus caldus ATCC 51756] Length = 357 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 43/352 (12%), Positives = 104/352 (29%), Gaps = 36/352 (10%) Query: 13 KERTRHGKIIYYFR-KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + ++ +I + R + G ++ A+ ++ + + + + TT+ Sbjct: 7 RYDDQNIRIGWQVRIRKRGFPQQVRTFRTKAEAEAWARSIEAEMDRGVWQDRSEAERTTV 66 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----- 126 L+ Y + + S + G ++T+ I S + R Sbjct: 67 GELLDRYAREV-LADKKHCTPE--LSRLKTLDDAFGRVAVARLTSSAIASFRDKRLRDEG 123 Query: 127 ----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINP---CLSVERPKRKTEGIRPWTKEDM 179 + + + + + K A R+ +A+ V+ PK R + Sbjct: 124 RGGKPVSGQTVKHEIGLLHRVLKKAEREWGIALPMGLPTEKVQAPKLPQGRDRRLQGNEE 183 Query: 180 QQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRA--------GVQHLQNNIFSIKTQKT 229 ++ + + P L + +R + G + +Q K Sbjct: 184 ERLLAACARARNPWLLPLTRFAIETAMRAGEMLETKGTADPETGERPIQTTGLLWKHVDL 243 Query: 230 GTIITVELPDGFMKL-------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 +A+ + ++ + F +AG+ Sbjct: 244 KKRTATLPMTKNGTARVVPLSSVAVEILRGLPRSMDGRVFGTTYEAIHLSFTRACKRAGI 303 Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT--KGADRIRL 331 + H +R + + + ++ A G KT+ + YT + D RL Sbjct: 304 EDLRFHDLRHEATSRLFERDLNPMQVAAITGHKTLQMLKRYTHLRAEDLARL 355 >gi|241992604|gb|ACS73657.1| IntI [uncultured bacterium] Length = 314 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 36/302 (11%), Positives = 72/302 (23%), Gaps = 52/302 (17%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS-S 132 L+ + R ++ + ++ + + I G +++ + + S Sbjct: 15 LLDQVRDQLRVKHYSIRTEQAYVDWIKRFILFHGKRHPQEMGAPELEVFLTDLAVRGGVS 74 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 A ++ + + + +V R KR T +++ Sbjct: 75 ASTQNQALSAVLFLYREVLKIDLPWLDNVIRAKRPQRLPVVLTPVEVRAVLERM--DGVY 132 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVELPDGFMKLL----- 245 L L +G+R + R V+ + I + K G LP L Sbjct: 133 ALMGRLLYGTGMRLMECVRLRVKDVDFGRNEILIRDGKGGKDRVTMLPSTVAATLADHLQ 192 Query: 246 -------------------------------AMTPIGKETFFINNDKQKMNATQ------ 268 + + Sbjct: 193 RRRVIFEDDLAAGKAEVWLPDALAKKYPGAGTEWAWQYVFCSGSYSTDPRSGRVRRHHID 252 Query: 269 ---FSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 K T A + K + H +R AT + G + G V YT Sbjct: 253 EKLLQRAMKKAVTAARLTKPATPHTLRHSFATHLLEGGYDIRTVQELLGHSDVSTTMIYT 312 Query: 324 KG 325 Sbjct: 313 HV 314 >gi|153805890|ref|ZP_01958558.1| hypothetical protein BACCAC_00130 [Bacteroides caccae ATCC 43185] gi|149130567|gb|EDM21773.1| hypothetical protein BACCAC_00130 [Bacteroides caccae ATCC 43185] Length = 267 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 37/240 (15%), Positives = 72/240 (30%), Gaps = 12/240 (5%) Query: 114 ITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 IT + + V + A + + ++A+ + + +P SV Sbjct: 29 ITKEMMEQFVAYLQSRSVGEGAKSIYQRFKKVIRYAIDHDVMLKDPSKSVTCKVDSQMLR 88 Query: 172 RPWTKEDMQQFKSFWS---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228 + + Q + E R AF F LY GL D +++ +K ++ Sbjct: 89 KDVLSPEEIQKLAACHYDNENPNVRRAFIFCLYCGLCFCDVKDLTYKNVDYANRLLKFEQ 148 Query: 229 TG---TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 + + + L K +AG++K Sbjct: 149 SKTKGYSASSGVVIPLNDSLLSIIGEAPVDKNCLIFDLPTYESCCKSVKRWVKRAGIDKH 208 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343 S H R A + GA + + G + E YT+ D +L + + + Sbjct: 209 ISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVD--KLKEEAINSLPELK 266 >gi|241992564|gb|ACS73629.1| IntI1 [uncultured bacterium] Length = 315 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 35/302 (11%), Positives = 84/302 (27%), Gaps = 52/302 (17%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132 ++ + R+ + ++ + ++ + IR G + + + + + + S Sbjct: 16 VLDQLRERIRYLHYSLLTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 ++ L + + + + RP+ T +++ + + Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230 RL + L +G+R S+ + V+ L + +I ++ Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLRERLS 193 Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265 + + A + + M Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253 Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 F FK +AG+ K + H +R AT +G + G V YT Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313 Query: 324 KG 325 Sbjct: 314 HV 315 >gi|189468256|ref|ZP_03017041.1| hypothetical protein BACINT_04652 [Bacteroides intestinalis DSM 17393] gi|189436520|gb|EDV05505.1| hypothetical protein BACINT_04652 [Bacteroides intestinalis DSM 17393] Length = 398 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 37/266 (13%), Positives = 80/266 (30%), Gaps = 18/266 (6%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137 +++ L +++ + S + + + +T + + S + Sbjct: 115 FKQEVMTSGLKESTKRNHLSTLALLQDFKKNVTFSDLTFEFVSSFEYFLQSKGYHTNTIA 174 Query: 138 TSMRVLFKWAV----RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193 M+ L + ++ + K G + E++++ ++ +G + Sbjct: 175 KHMKHLKRHINVAINKEYMDIQKYAFRKYKIKTVENGHTHLSPEELEKLETLQLKGRYTK 234 Query: 194 L-----AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248 AF F Y+G+R SD ++ I L + Sbjct: 235 YQKTLDAFLFCCYAGMRYSDFVNMKPDNIVEMHQET--WLIYKSIKTGTEVRLPLYLLFS 292 Query: 249 PI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAG 301 K + + + + + A AGV S H R +AT+ G Sbjct: 293 GKGILILNKYQANLQDFFHLRDNSNVNKELIIIARLAGVAKKVSFHTARHTNATLLIYNG 352 Query: 302 ATAHELMATYGWKTVDQAETYTKGAD 327 + G K+V + YT D Sbjct: 353 VNITTVQKLLGHKSVKTTQIYTNVMD 378 >gi|29830271|ref|NP_824905.1| integrase [Streptomyces avermitilis MA-4680] gi|29607382|dbj|BAC71440.1| putative tyrosine-family recombinase/integrase [Streptomyces avermitilis MA-4680] Length = 379 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 56/375 (14%), Positives = 107/375 (28%), Gaps = 36/375 (9%) Query: 3 PSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPK-REYI 61 R F + + G+ +R +R T A ++ R Sbjct: 4 KKGRRRSFGSCRQLASGRWQVRYRDPQTGLLRPAEKTYETKTDAQVALTHIEADITRGQW 63 Query: 62 NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIR 120 P + + + LA +R ES ++ G +TT +R Sbjct: 64 ADPDAGDVNFADYATAWLRD---RKLADRTRERNESVMRLHVVPVFGAGSIADVTTARVR 120 Query: 121 SGVESRKHTPS---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 S + ++ +R L AV E + NPC + Sbjct: 121 SWRGKLLAAGVGEPTVVKAYQLLRALMNTAVDDELIRRNPCRIKGADSYDVPERPVLSVA 180 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----- 232 ++ ++ + RL ++ LR + + + N + ++ Sbjct: 181 EVFG--VAYAIAPRYRLLVLLAAFTTLRFGELAALRRKDIDLNGRLVVVRRAQAELQNGR 238 Query: 233 ------------ITVELPDGFMKLLAMTPIGK------ETFFINNDKQKMNATQFSIWFK 274 TV P + ++ F+ ++ + F + Sbjct: 239 LFDKAPKSAAGLRTVSFPAELVDEISHHLKHYAADGQEGHLFVGPQGGQLRRSNFRDDWI 298 Query: 275 AKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRL 331 AGV H +R T+++ AGA+ ELM G + A Y +DR R Sbjct: 299 KARKAAGVSPKLHFHDLRHTGNTLASTAGASTRELMTRMGHSSSRAALIYQHMTSDRDRT 358 Query: 332 GIKNSRRISSVVDSD 346 + + D Sbjct: 359 IADRLGAMIRNGEGD 373 >gi|299144869|ref|ZP_07037937.1| integrase/recombinase, phage integrase family [Bacteroides sp. 3_1_23] gi|298515360|gb|EFI39241.1| integrase/recombinase, phage integrase family [Bacteroides sp. 3_1_23] Length = 330 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 33/294 (11%), Positives = 91/294 (30%), Gaps = 14/294 (4%) Query: 42 TFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ 101 + A +++ + E + +++ + L+S + + + + + + ++ Sbjct: 23 ARLKAVLASELHNVEIVEKEDCSKQQAQENEHLLSSFISAKKIEGCSEKTLAYYRNTIER 82 Query: 102 IIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP 157 ++ ITT IR+ E + + + F W ++Y+A +P Sbjct: 83 LLLTL-SIAICHITTSDIRAYLSDYQEEHQSSKVTMDNMRRIFSSFFAWLEDEDYIAKSP 141 Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217 + + K + + E ++Q + + L +G+R + + + + Sbjct: 142 VRRIHKVKTDSLVKEVLSDEQLEQ-LRDSCTNKRDLALIDILSSTGIRVGELVKLNREDI 200 Query: 218 QNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFI------NNDKQKMNATQFS 270 + V L + + ++ + Sbjct: 201 DFHERQCVVFGKGNKERIVYFNARTKLHLQQYLDERTDDNPALFVSLHLPHTRLTISGVE 260 Query: 271 IWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + + + K H R+ AT++ D G ++ G +D Y Sbjct: 261 VRIRDLGKSLSMPKVHPHKFRRTLATMAIDKGMPIEQVQRLLGHVRIDTTLHYA 314 >gi|149012704|ref|ZP_01833680.1| prophage LambdaSa1, site-specific recombinase, phage integrase family protein [Streptococcus pneumoniae SP19-BS75] gi|147763304|gb|EDK70242.1| prophage LambdaSa1, site-specific recombinase, phage integrase family protein [Streptococcus pneumoniae SP19-BS75] Length = 375 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 44/375 (11%), Positives = 120/375 (32%), Gaps = 56/375 (14%) Query: 18 HGKIIYYFRKGH---GRRIRLPYPHESTFIPAY-MSALTGSTPKREYINSPRKKPTTLKW 73 +GK ++ R + ++ E A +A+ + +++ + + T + Sbjct: 8 NGKYKFFERYKDPYTEKLKKVSVTMEKKTPQARNQAAILLQEKINKKLSTKQVESITFEE 67 Query: 74 LISEYRKSAHWGSLAVNSR---ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 + + + KS ++ +++ S + Q+I D + + ++ +E + Sbjct: 68 IYNLFYKSWS-QTVKESTKHNCKSIDKIMKQVIPS--DTLLANLDRRFLQEAIEKIIESN 124 Query: 131 S--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-------PWTKEDMQ- 180 +A + +R +F +AV+ Y+ N P++ T ++++ Sbjct: 125 GYITAKKVRHRLRGIFNYAVQYSYIENNEVDYTTIPQKPKTLEELEKKRNNFLTMQEIKA 184 Query: 181 --QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------ 232 + + L +G+R + ++++ I+ Sbjct: 185 LVDVLNRREYHQKYADMVLVLALTGMRYGELTALQLKNIDFENNKIEITGNFDSVNKIKT 244 Query: 233 --------ITVELPDGFMKLLAMTPIG-----------KETFFINNDKQKMNATQFSIWF 273 T+++ + ++ + + F Q F Sbjct: 245 LPKTTNSIRTIKVSESVIEAIQRQIVRLSERFQPLSSDDYIFCFEKWNQPTTIACFIQIL 304 Query: 274 KAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330 K +A + K S+H R + A++G +M G E Y+ + Sbjct: 305 KKYGKQAKIEKNLSSHIFRHSHISFLAESGLPIKSIMDRVGHSNAKMTLEIYSHTTE--- 361 Query: 331 LGIKNSRRISSVVDS 345 ++ + +D+ Sbjct: 362 ---DMEDKLVNKLDT 373 >gi|295397035|ref|ZP_06807149.1| phage integrase [Aerococcus viridans ATCC 11563] gi|294974726|gb|EFG50439.1| phage integrase [Aerococcus viridans ATCC 11563] Length = 371 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 40/357 (11%), Positives = 92/357 (25%), Gaps = 56/357 (15%) Query: 14 ERTRH-GKIIYYFRKGH-----GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67 + ++ GK + R R++R + + + A + T + Sbjct: 4 YKDKNTGKWYFSIRYQDDFGANKRKVRRGFKTKKLALEAEREFMNKETGEI--------- 54 Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVES- 125 T L Y L ++ + S + +I GD KI + IR Sbjct: 55 DMTFNSLTEIYLDDMSHR-LRESTMDNKRSIINSKITPLIGDTKLSKINERTIRKWQNQI 113 Query: 126 --------RKHTPSSAIQFLTSMRVLFKWAVRQE-----------YVAINPCLSVERPKR 166 + + + M + +AV+ + Sbjct: 114 LSLKDDNGKLFSQTYIKTINNQMSAILNYAVKYYGLESNPIHTIGSIGKKHADEKNYWSL 173 Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226 + + ++ Q R AF L ++G+R + + Sbjct: 174 EQFNKAMAYYDFRDSQTTYSFPTLQYRFAFHLLFFTGIRVGELLALSANDFDYTNKILTI 233 Query: 227 QKTGTI----------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA-TQF 269 K+ + +P + +L + ++ Sbjct: 234 NKSYQRLRGKDVINRPKTDTSIRDITIPQFILDMLDTYLETLYDYQPDDRIFPNVRKDTL 293 Query: 270 SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 + + + + + H +R A++ G + G K + TY+ Sbjct: 294 AKQLQMISKHTDLPRIQVHDLRHSHASLLIKQGINFKVIQQRLGHKDIQTTLNTYSH 350 >gi|291484295|dbj|BAI85370.1| hypothetical protein BSNT_02803 [Bacillus subtilis subsp. natto BEST195] Length = 389 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 35/380 (9%), Positives = 91/380 (23%), Gaps = 46/380 (12%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 ++ K R R + ++ + ++ A + + Sbjct: 7 GYIPKAR-RQWEYRVSYKDPFTLKYKIKSKSGFKTKKEAQKAAAEQEKQIAAGFEFDTET 65 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK 127 +L+ + + ++ N+ E I+ + I + + Sbjct: 66 MSLEQFLFSWLHEYKKDTVRKNTYELHERNIKNHILPYFKNIKITDIKPIMYQKFLNFLT 125 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYV-------AINPCLSVERPKRKTEGIRPWTKEDMQ 180 S +F + + +S + K+K +++ + Sbjct: 126 DQGYSKRTVEIIHGTMFNAFSKAVIIGKLAKNPCYGATISNKNEKKKGTLEYMLSEDIPK 185 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI---------------- 224 + + + F L+ +G+R ++ + I Sbjct: 186 FLQEAYKYNYIYYIFFRTLIETGMRKGEAAALQWTDINLRENYIDIKNTLDFSAKTAAEL 245 Query: 225 ---KTQKTGTII-------------TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ 268 + ++L Sbjct: 246 FGETKTYESKRRISIGASLSAALQKHKKWQFENKQMLQDDYKHDLNLVFCRVDGNFLPKS 305 Query: 269 -FSIWFKAKATKAGVNKSA-HGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKG 325 F +A +NK H +R A + ++GA + G K++ Y+ Sbjct: 306 TLFNAFNRILKRADINKMPIHALRHTHAVLLLESGADMKYIQERLGHKSMMVTADVYSHI 365 Query: 326 ADRIRLGIKNSRRISSVVDS 345 + +L + V S Sbjct: 366 S--KKLDQNRIKDYEKYVSS 383 >gi|77163532|ref|YP_342058.1| Phage integrase [Nitrosococcus oceani ATCC 19707] gi|254436437|ref|ZP_05049942.1| site-specific recombinase, phage integrase family protein [Nitrosococcus oceani AFC27] gi|76881846|gb|ABA56528.1| Phage integrase [Nitrosococcus oceani ATCC 19707] gi|207087971|gb|EDZ65245.1| site-specific recombinase, phage integrase family protein [Nitrosococcus oceani AFC27] Length = 310 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 44/292 (15%), Positives = 94/292 (32%), Gaps = 37/292 (12%) Query: 77 EYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITT----KHIRSGVESRKHT 129 ++ H+ + + ++ S R + D+ + T K + + R Sbjct: 14 DFLAHLHYAKGYSQGTCYAYNSDLGIWGRWLAEVGKDWCQATHADTEKFVAWQMRERGAK 73 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ--------- 180 + + + +KWA++ V +P ++PKR KE+ Q Sbjct: 74 AHIVARRSSCLGSFYKWAMKNALVESDPIYLADKPKRPYRIPVWLEKEEQQALQEATQRI 133 Query: 181 ----------QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----- 225 + + + + F +L SGLR S++ V+ ++ K Sbjct: 134 DNLPENIFGRTQEHIKAVRRRYDVLFGLILNSGLRISEALAVKVRDVRVMNGIAKSVRII 193 Query: 226 ---TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 ++ + F L F + + + +AG+ Sbjct: 194 GKGNRERLVPLPEAFGQVFGAWLQGREGDDFVFAKAPGGKPPGPHAARAYLRRLIERAGI 253 Query: 283 NK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 +K + H +R AT ++GA ++ A G + + YT R+ Sbjct: 254 DKPVTPHKLRHTYATRLLESGAELVDIQALLGHVDLSTTQIYTH-VSEERMA 304 >gi|291522352|emb|CBK80645.1| Site-specific recombinase XerD [Coprococcus catus GD/7] Length = 159 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 24/142 (16%), Positives = 43/142 (30%), Gaps = 12/142 (8%) Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254 E + +G+R S+ + + I+ + G + + L Sbjct: 1 MLELMYATGIRVSELVSLTIDDINVQAGYIRCSERGRERIIPIGSVARISLRQYLKQARP 60 Query: 255 FF----------INNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302 N Q M+ F K A KAG+ + + H +R A + GA Sbjct: 61 AMISDDSSAILFPNYSGQPMSRQGFWKILKQYAAKAGIESDITPHTLRHSFAAHLLENGA 120 Query: 303 TAHELMATYGWKTVDQAETYTK 324 + G + + Y K Sbjct: 121 DLRSVQEMLGHSDISTTQIYLK 142 >gi|290968678|ref|ZP_06560216.1| site-specific recombinase, phage integrase family [Megasphaera genomosp. type_1 str. 28L] gi|290781331|gb|EFD93921.1| site-specific recombinase, phage integrase family [Megasphaera genomosp. type_1 str. 28L] Length = 357 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 43/345 (12%), Positives = 103/345 (29%), Gaps = 28/345 (8%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 + +HGK + + + + A + + +++ TLK Sbjct: 27 YKDKHGKW--------KQTSKSGFARKRDITTAVKNEMLKELSGLLSLDNSMD-SITLKD 77 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132 A+N+ I++ + +++ D ++IT H + + ++ Sbjct: 78 FSELVIADKK-NEYALNTIITYRNAINRL-PTLKDMPIKEITYAHCIKEFATLEQAKGNT 135 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT--EGIRPWTKEDMQQFKSFWSEGS 190 +T ++ FK A+ + + P + +R +T+E+M ++ Sbjct: 136 VFSTVTVLKSFFKQAMLYKVIPSTPLANYSYKPGHKGVSRLRIFTEEEMNTLLDYYKGKD 195 Query: 191 QPRLAFEFLL-YSGLRCSDSCRAGVQHLQNNI----FSIKTQKTGTIITVELPDGFMKLL 245 L Y GLR + +Q N+ + + Sbjct: 196 LQTWIQLCFLRYCGLRLGEMSAIRWCSIQGNMLTVDRQYSNISGKFAFRKLKTKNSYRTI 255 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-----SAHGVRKFSATISADA 300 + + + + + + A + K S H R AT Sbjct: 256 PIPDTLLNAIQVYKKRYPPFISTARVVQRNIALNISIKKIYPCHSPHDFRHTYATNLLAR 315 Query: 301 GATAHELMATYGWKTVDQAET-YTKGADRIRLGIKNSRRISSVVD 344 G + + G T+ E Y ++ +R +++ + Sbjct: 316 GVNLRTVASLLG-DTITTVEKTYIHYSEEMR--KNAVIKLNEIFG 357 >gi|253755098|ref|YP_003028238.1| integrase [Streptococcus suis BM407] gi|251817562|emb|CAZ55309.1| integrase [Streptococcus suis BM407] Length = 295 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 33/280 (11%), Positives = 83/280 (29%), Gaps = 37/280 (13%) Query: 78 YRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSA 133 Y L+ ++ ++++ Q + + S +E H+ S+ Sbjct: 9 YLDYCKAHKRLSTHTLRAYKNDLMQFYNS---------NNECVISYIEGLTHSNLKTSTL 59 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR-KTEGIRPWTK-------------EDM 179 + + S++V + + + + NP + R + + + Sbjct: 60 RRKIASLKVFYGYLQLKNVITDNPFNQLRFQFRAEKTLPKTISHDSLKILYTYLQKKMIS 119 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELP 238 + + + L LL +G+R S+ C ++ + + K + + Sbjct: 120 AKTIYQKQKAERNLLIVSLLLSTGIRISELCHIQIKDINLTEQTLQILGKGKKERMIFIG 179 Query: 239 DGFMKLLAMTPIGKETFFINND-------KQKMNATQFSIWFK--AKATKAGVNKSAHGV 289 D L I ++ ++ + + K T+ + H Sbjct: 180 DERTFQLLKAYITCYCNHTDDYLFPGKSLQKPLTEQSVRLLLKTAKTQTRLTTTITPHMF 239 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT+ D + G ++ + YT + Sbjct: 240 RHSFATMLLDNDVDIRYIQQILGHSSISITQIYTHVSQSR 279 >gi|226949169|ref|YP_002804260.1| site-specific recombinase, phage integrase family [Clostridium botulinum A2 str. Kyoto] gi|226843724|gb|ACO86390.1| site-specific recombinase, phage integrase family [Clostridium botulinum A2 str. Kyoto] Length = 330 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 44/293 (15%), Positives = 93/293 (31%), Gaps = 47/293 (16%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRKHTP 130 I E+ +L+ + +S+E + G D +K+T K IR + K+ Sbjct: 8 IDEFMIYCESKNLSKKTMMSYEQTLRLFTKYLEEEKGIGDVKKVTEKMIREYINYTKNRG 67 Query: 131 ----------------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162 ++ ++ +++V F + + Q Y+ + +++ Sbjct: 68 KYTIVGDKETLKTNTPEMRKDYGKKVSITTINNYIRNIKVFFNFLLEQSYIKKDVVKNIK 127 Query: 163 RPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218 + K + + T + + L LL +G+R + V+++ Sbjct: 128 QFKNQRKAKEFITDSQFAELLRHIDTTKFHERRDHLCIMLLLDTGMRIGECLEIKVENID 187 Query: 219 NNIF----SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA------TQ 268 N + K V K L K+ + ++ Sbjct: 188 MNYRSILLPAEDTKGKRDRYVYFSQVMNKELRRWLQYKDRYVESDYLFCTTKGTPVLIRT 247 Query: 269 FSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320 F K A +AG+ + H +R A +G + + L G +V E Sbjct: 248 FERKLKDYANRAGLKDIHPHQLRNNFAKRFLMSGGSIYILSQVLGHSSVKVTE 300 >gi|51596111|ref|YP_070302.1| integrase [Yersinia pseudotuberculosis IP 32953] gi|51589393|emb|CAH21015.1| putative integrase [Yersinia pseudotuberculosis IP 32953] Length = 340 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 61/338 (18%), Positives = 111/338 (32%), Gaps = 39/338 (11%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPH--ESTFIPAYMSALTGSTPKREYINSP 64 +PP V R GK Y FR GR IRL ++ A+ + Sbjct: 13 MPPRV-----RKGKSAYEFRAIDGRTIRLCNFECSQADVWVAFEKLMINQKE-------- 59 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 +T LI+E+ S + LA ++ + Y +II G I +HIR ++ Sbjct: 60 ---DSTFTGLINEFLLSGDFCELASETQKDYHKYSSKIIAVFGKMSPDNIRPEHIRKYMD 116 Query: 125 SRKHTPS-SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 R A + + M +F+W + V +NPC V+ + E +R D + Sbjct: 117 KRGAKSRVQANREKSFMSRVFRWGYERGKVKLNPCQGVK---QFKEKVRTRYITDEEYTA 173 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 + + S ++A E R +D L + I+ KTG + Sbjct: 174 LYDTAPSVVKVAMELAYLCCTRQADILDMKKGQLLESGILIQQSKTGVAQIKAWIPRLHE 233 Query: 244 LLA-------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-------SAHGV 289 ++ + + F+ + A + + H + Sbjct: 234 VIRLASTLPLNRGVVSIYLLHQQSGSRFTRDSFNAHWMKAKKAATMKYPELEFNFTFHDL 293 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 + + + ++ A G K Q Y + + Sbjct: 294 KAKGISDL---TGSLYDKQAISGHKNASQTARYDRKIN 328 >gi|291525337|emb|CBK90924.1| Site-specific recombinase XerC [Eubacterium rectale DSM 17629] Length = 377 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 44/370 (11%), Positives = 98/370 (26%), Gaps = 51/370 (13%) Query: 14 ERTRHGKI---IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 + G+ Y ++ + Y H + LT +P++ T Sbjct: 9 RKRADGRWEGRYYIVDTAGSKKCKSVYGHSYKEVTE--RLLTAKAASLNQTIAPKQSAIT 66 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHT 129 +K + ++ +S S ++ + + + I G+ ++ I + Sbjct: 67 VKEVAEKWLESI-ASSRKCSTIQKYSTIYNKYIKPNWGESVIDQLNQNEILKEL-PETVG 124 Query: 130 PSSAIQFLTSMRVLFKWAVRQE---YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 S L + + + ++ T + + + Sbjct: 125 ESVTKSILCIFNSILAYGAATYGTGEIHLSYRAKRSSVTSSNNINTINTTDQQKLTEYLL 184 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------------- 232 +E +L L+ GLR + C + + ++ +T Sbjct: 185 TELDIYKLGILLCLFMGLRLGEICALKWEDIDMISRTLHVNRTVQRLPVDTIHTSGSSQN 244 Query: 233 ---------------------ITVELPDGFMKLLAMTPIGKETFFINN--DKQKMNATQF 269 + + D L+ Q M+ + Sbjct: 245 NHTATRKTSLYIDSPKTSNSLREIPISDFIYDKLSDYYNTSMKGDSYFLKKNQPMDPRTY 304 Query: 270 SIWFKAKATKAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK-GA 326 F +AG+ + H +R AT +GA A + G V+ Y Sbjct: 305 QNKFHIYIREAGIGNTHFHALRHTFATNCISSGADAKSVSEILGHSNVNITLNRYVHPNL 364 Query: 327 DRIRLGIKNS 336 + R I + Sbjct: 365 ETKRSAINSI 374 >gi|290475797|ref|YP_003468688.1| putative integrase [Xenorhabdus bovienii SS-2004] gi|289175121|emb|CBJ81924.1| putative integrase [Xenorhabdus bovienii SS-2004] Length = 326 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 59/336 (17%), Positives = 112/336 (33%), Gaps = 35/336 (10%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 +PP V + G+ Y F+ GR IRL A + + E + + K Sbjct: 1 MPPRVFR-----GRSAYEFKHPDGRTIRLC---------ALIVDKSVVWNHYEQLVNEEK 46 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 T L+ ++ SA + LA +++ + Y +++ G + I HIR ++ R Sbjct: 47 ATFTYGSLVDDFLHSADFIELAKDTQSDYRKYSKKVVPVFGKMNPNNIRPDHIRKYMDKR 106 Query: 127 K-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + + A + + M +F+W + V NPC V++ + + E ++ Sbjct: 107 GLQSRTQANREKSFMSRVFRWGYERGLVKKNPCQGVKQYRENSRERYITDAEYQALYEVS 166 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 + ++A E R D L IK KTG + K + Sbjct: 167 P---TVIQVAMEIAYLCCARQKDILALSKSQLMEAGIYIKQHKTGKSQIKGWSERLRKAI 223 Query: 246 AMTPI-------GKETFFINNDKQKMNATQFSIWFKAKATKA-------GVNKSAHGVRK 291 + + + + F+ + A N + H ++ Sbjct: 224 KLANSLPLKEGLHSLYVIHQANGKIYSRDGFNSRWLKAKEIAAQKYPELRFNFTFHDLKA 283 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 + T E A G K + Q Y + + Sbjct: 284 KGISDL---EGTLQEKQAISGHKDIGQTARYDRKTE 316 >gi|222095006|ref|YP_002529066.1| DNA integration/recombination/invertion protein [Bacillus cereus Q1] gi|221239064|gb|ACM11774.1| DNA integration/recombination/invertion protein [Bacillus cereus Q1] Length = 370 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 52/370 (14%), Positives = 111/370 (30%), Gaps = 42/370 (11%) Query: 12 TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT- 70 K+ + K Y G + A T +++ + Sbjct: 5 VKKDKKTEKYFYIVDIGIDPLTGKRKQKKKRGFITKKEAENALTMVLSEVHTGTYVEPSK 64 Query: 71 --LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK 127 + + + S+ + + + Y +II G+ K+T+ H+++ V S + Sbjct: 65 LIYGEYLESWFNTKR-HSVGIQTAKVLKGYLTSRIIPSLGNIKLAKLTSLHMQNYVNSLR 123 Query: 128 H---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + + + +R + A+ E + N + + PK E + WT+E++Q F Sbjct: 124 DEGLKRGTIEKIIKIIRNSLEHAIDLELITKNVAVKTKLPKGDKEELTVWTEEEVQLFLK 183 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------------ 232 S+ + F L +G+R + + + + +T + Sbjct: 184 AAQ-DSRYSIVFHMALVTGMRQGELLGLRWKDVDLEKGHLTISQTLSHDGKTFLLGGKTK 242 Query: 233 ---ITVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKA 275 + LP + L + +N A Sbjct: 243 SSLRKILLPASTIAKLKKHRAVVLKEKLSQGEEYQDNDLVMCTPSGTPINPANVRRSLNA 302 Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGI 333 KA V K H +R AT+ G + G + +TY+ + Sbjct: 303 LIQKAAVPKIRFHDLRHTHATMLLAKGVNVKVIFERLGHSNIKITLDTYSHVLPT--MQE 360 Query: 334 KNSRRISSVV 343 +I ++ Sbjct: 361 DAVNKIEEIL 370 >gi|260893825|ref|YP_003239922.1| integrase family protein [Ammonifex degensii KC4] gi|260865966|gb|ACX53072.1| integrase family protein [Ammonifex degensii KC4] Length = 315 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 44/306 (14%), Positives = 104/306 (33%), Gaps = 17/306 (5%) Query: 58 REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKIT 115 R+ + +T + ++ E+ A + + ++ + R+ D DY ++ Sbjct: 2 RKLFRLSERLQSTWQEVLEEFCLHQQAQGKAERTLYDYRAWIGRFFRRHPDAWGDYERLR 61 Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR--- 172 + P++ +++ F W VR+ Y+ NP +++ + Sbjct: 62 RAVLEHFAHLSHKAPATFNMARKYLKLFFAWCVREGYLPANPVDGIKKRREDGTPRPVSL 121 Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 ++ + G + F L +G+R ++ + +H + + Sbjct: 122 EAVQKLLTACDRKSFTGLRDYALILFQLDTGVRPGEALKLLPEHFNLRSLEVYIPAQVSK 181 Query: 233 --------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA---TKAG 281 I+ + +LLA+ P + + Q S W A +AG Sbjct: 182 TRAARTVVISPQTARAVQRLLAVRPAAWGSKAPVFCSETGQPMQVSSWTHRLALISRRAG 241 Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSRRIS 340 V + + +R +AT GA+A + G + Y + + +R + ++ Sbjct: 242 VKVTPYQLRHTAATELLRGGASAFAVARQLGHLHLSTTRRYIQLVEEDLRREHDRASPVA 301 Query: 341 SVVDSD 346 +V Sbjct: 302 RLVPER 307 >gi|37525093|ref|NP_928437.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens subsp. laumondii TTO1] gi|37527552|ref|NP_930896.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784519|emb|CAE13419.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786987|emb|CAE16061.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 370 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 52/304 (17%), Positives = 95/304 (31%), Gaps = 32/304 (10%) Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIR 120 P P +L L+ + + + ++ + + G + IT + Sbjct: 24 PAHDPKSLYALLLRFVVWRQERNWSESTLKVQTHHTYHFILWATERGLYYAADITRPILE 83 Query: 121 SGVESRKH---------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 + + L ++V FKW +Q + NP +E P+ + Sbjct: 84 RYQRYLYQYRKTNGEPLSTRTQRTQLEPLKVWFKWLTKQNLILANPAADIELPRLEKHLP 143 Query: 172 RPW-----TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSI 224 R T++ + Q +G + R E L +G+R + R V + +I Sbjct: 144 RYILTIDETEQILAQPDLTTLQGIRDRALMELLWSTGMRRGELTRLDVYSVDGKRKTVTI 203 Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM-----------NATQFSIWF 273 + K + L + + L I N K A S Sbjct: 204 RQGKGNKDRVLPLGERALSWLQRYQQQVRPQLIVNPDVKALFVAMDGLDGLQANGISNLV 263 Query: 274 KAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 A G+ K H R AT + GA + A G +V+ + YT+ + R Sbjct: 264 TAYINAVGIEKKGACHLFRHAMATQMLENGADLRWIQAMLGHASVESTQVYTQVSIRALQ 323 Query: 332 GIKN 335 + Sbjct: 324 AVHA 327 >gi|260596908|ref|YP_003209479.1| Prophage DLP12 integrase [Cronobacter turicensis z3032] gi|260216085|emb|CBA28835.1| Prophage DLP12 integrase [Cronobacter turicensis z3032] Length = 387 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 48/376 (12%), Positives = 108/376 (28%), Gaps = 61/376 (16%) Query: 17 RHGK-IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75 R G+ + G+RI+ + A + T + Sbjct: 5 RRGEIWYASYSLPGGKRIKESL-GTADKRQAQELHDRRKSELWRVDRLGDFPDVTFEEAC 63 Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP----- 130 + + S + + + + IT I + V ++ Sbjct: 64 LRWLEEKADKK----SLDTDKGRMGFWLEHFEGMKLKDITEAKIYTAVSKMQNRKAKEIW 119 Query: 131 ------------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 S+ + L M+ + + A +++ + ++ P+ Sbjct: 120 IQKCAAAERKGKEFPVFEGRPVTTSTKAKHLALMKAILR-AAERDWKWLEKAPVIKIPQV 178 Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IF 222 + + +R E+ ++ + E + F L +GLR S+ Q + Sbjct: 179 RNKRVRWLEPEEAERLINECPEPLKS--VVRFALATGLRRSNIINLEWQQIDMQRRVAWV 236 Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------------FS 270 + + K+ I V L D ++L + + K Sbjct: 237 NPEDSKSNRAIGVALNDTACRVLREQIGNHHKWVFVHTKAGNRPDGSATDQVRKMRVDDQ 296 Query: 271 IWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + + +AG+ + H +R A+ AG L GW++++ Y Sbjct: 297 RAWNSACRRAGIEDFRFHDLRHTWASWLIQAGVPLSVLQEMGGWESIEMVRRYAH----- 351 Query: 330 RLGIKNSRRISSVVDS 345 L + + +DS Sbjct: 352 -LAPNHLTEHARQIDS 366 >gi|15839120|ref|NP_299808.1| phage-related integrase [Xylella fastidiosa 9a5c] gi|9107738|gb|AAF85328.1|AE004060_3 phage-related integrase [Xylella fastidiosa 9a5c] Length = 339 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 54/340 (15%), Positives = 105/340 (30%), Gaps = 26/340 (7%) Query: 1 MTPSLRLPPFVTKERTR---HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPK 57 M + + R R G + YY+ G R P + + L + Sbjct: 1 MGRKPSKTGAIPRFRVRPQKSGVVYYYYDHGGTPRKETPLGRDYGVAIKRWAELEHAQIT 60 Query: 58 REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKIT 115 T + + YR A N++ +++ D + I Sbjct: 61 PAI-------AVTFRHVAERYRAEVIPTK-AYNTQRVEHRCLAALLKFFDDPPAPFEAIK 112 Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 ++R ++ R + SA + + L+ W + + +R E R Sbjct: 113 PVNVRQYLDWR-TSKVSANREVALFSHLWNW--ARSKGITDLPNPCAGIRRNKERGRDVY 169 Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 +D + + R A + +G R D + + + + I+ KTG + + Sbjct: 170 IDDTTYRAVYHAADQTLRDAMDLAYLTGQRVGDVASMDERQIIDGVLLIRQAKTGAKVAI 229 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF-------SIWFKAKATKAGVNKS--- 285 + L+ K + + + ++ F FK AG+ K Sbjct: 230 SITGELAVLIKRIFDHKRGLKLRSTRLIVDEKGFGLGCMALRYRFKKARAAAGIAKQVFQ 289 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 +R +AT AD + A G +V E Y + Sbjct: 290 FRDLRAKAATDKADLAGDIRQAQAQLGHTSVVMTEHYVRK 329 >gi|17546273|ref|NP_519675.1| putative integrase/recombinase protein [Ralstonia solanacearum GMI1000] gi|17428570|emb|CAD15256.1| putative integrase/recombinase protein [Ralstonia solanacearum GMI1000] Length = 354 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 46/343 (13%), Positives = 107/343 (31%), Gaps = 32/343 (9%) Query: 11 VTKERTRHGKIIYYFR-KGHGRRIRLPYPHESTFIPAYMSALT-----------GSTPKR 58 + ++ T+ G++ + + + G I A++ A + Sbjct: 4 IIEKYTKRGEVRFQAKIRRTGVPIASKVFPSREEAEAWIQATEPELQARSRQAARQQAQA 63 Query: 59 EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTK 117 + I + +P + L+ + + + + I+R +T Sbjct: 64 KLIAKFKDRPRIVADLLHRHMQEETVRKKGA---EAETHHISSILRYPLARIHLDNLTRS 120 Query: 118 HIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEY--VAINPCLSVERPKRKTEGIRP 173 I+ + R PS+ + L + K AV + + + SV RP +R Sbjct: 121 DIKEWRDQRLQDVAPSTVNRELNIINAALKVAVHEWDVAICQSVLTSVRRPSNPPGRVRR 180 Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSI------- 224 + E+ + E P + L + +R + + + SI Sbjct: 181 LSPEEEAALRQAGEETRNPYIVPILDLALNTAMRRGEILGLEWERISFAHRSIQLIETKN 240 Query: 225 --KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 + +++ ++ A + + A F + F +AG+ Sbjct: 241 GTPRGVPLSRHAMKVLATLKQVAAHELGYEGELNSGPVFPGLTANAFKLAFNRMMERAGL 300 Query: 283 N-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R + + + G + E+ + G K + + YT Sbjct: 301 ENFRFHDLRHEATSRLFEKGLSVMEVASITGHKDIRMLQRYTH 343 >gi|312872314|ref|ZP_07732384.1| site-specific recombinase, phage integrase family [Lactobacillus iners LEAF 2062A-h1] gi|311092137|gb|EFQ50511.1| site-specific recombinase, phage integrase family [Lactobacillus iners LEAF 2062A-h1] Length = 372 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 57/359 (15%), Positives = 115/359 (32%), Gaps = 40/359 (11%) Query: 1 MTPSLRLPPFVTKERTRHGKIIYYFRKG-----HGRRIRLPYPHESTFIPAYMSALTGST 55 M L + + ++G+ YYF+ +G+RI T+ A + Sbjct: 1 MPRKTNLS--IKEYTLKNGQKRYYFKISLGENSNGKRIVTTRRGFKTYAEA--DQVYNQL 56 Query: 56 PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKI 114 + + N ++ T+ L + ++ ++ +S IS + I G+ KI Sbjct: 57 SRVKADNFVKQNQITIDELHKIWFENYK-NAVKESSAISESGIYKNHIKPFFGNQFIDKI 115 Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 T ++ + + + + + M LF++ +R YV+ N V PK+ R Sbjct: 116 TVVDLQKWADKKATELVAFRRVIAVMNGLFEYGMRLNYVSSNLVKRVLIPKKTARKRRDT 175 Query: 175 TKEDMQQFK------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----------- 217 K + + + F+ L +GLR S+ Q + Sbjct: 176 EKNVYTRKELETFLKVAKNFPIMKYTFFKILACTGLRRSECLALTWQDIDFKNNLLHVNK 235 Query: 218 ------QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT--QF 269 + + + + + + K L + + Sbjct: 236 TLAYGLNHQVIVQTPKSKKSNRKIPISSSLRKALIEYQKQATHDKLFHTLNGKYLYLGTP 295 Query: 270 SIWFKAKATK-AGVNK-SAHGVRKFSATISA-DAGATAHELMATYGWKTVD-QAETYTK 324 +IW K K + K + HG R AT+ + + G K ++ YT Sbjct: 296 NIWLKKIYDKNPDLKKITVHGFRHTFATLLISETNVKPKTVQMILGHKNIEITLNLYTH 354 >gi|309810567|ref|ZP_07704384.1| site-specific recombinase, phage integrase family [Dermacoccus sp. Ellin185] gi|308435481|gb|EFP59296.1| site-specific recombinase, phage integrase family [Dermacoccus sp. Ellin185] Length = 422 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 62/350 (17%), Positives = 108/350 (30%), Gaps = 37/350 (10%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI-------NSPRK 66 + G+ + +R P E+ A R+ N PRK Sbjct: 15 RKLPSGRFQASYIGRDLQRHNAPTTFETKGDAEGWLAGERRLRDRDDWTPPSVRANRPRK 74 Query: 67 KPTTLKWLISEYRKSAHWGS--LAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGV 123 TL E+ + L +R ++ + + GD + IT +++ Sbjct: 75 GDPTLAEWWPEFIERRRVDGEPLRPTTRAWYDQLYRHYLKPTLGDVPLKGITAARVKAWW 134 Query: 124 ESRK-HTPSSAI-QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + SS ++R A+ + + NPC ++ ++K + T+E + Sbjct: 135 DDFPTDRGSSVRPNAYMALRAAMSQALEEGLIITNPCT-IKVQRKKKRELEVATREQVAT 193 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--------- 232 S E P + GLR + + +I+ ++ + Sbjct: 194 IHSHMPEAFAP--IVTIAAWCGLRFGEIIELRRGDIDLARRTIRVERAVSRVHGKFIVGP 251 Query: 233 -------ITVELPDGFMKLLAMTPIGKETFF-----INNDKQKMNATQFSIWFKAKATKA 280 TV +P L + QFSIW++ A Sbjct: 252 PKSDAGIRTVSMPTAVADELEQHLERHVRPEPDALVFEYCGHHLQQPQFSIWWRYARGMA 311 Query: 281 G-VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 G + H +R SA A GAT +LMA G + A Y A Sbjct: 312 GRPDLRLHDLRHTSAVWYAQQGATLADLMARLGHSSPTMALHYQHAAAER 361 >gi|28198917|ref|NP_779231.1| phage-related integrase [Xylella fastidiosa Temecula1] gi|182681625|ref|YP_001829785.1| integrase family protein [Xylella fastidiosa M23] gi|28057015|gb|AAO28880.1| phage-related integrase [Xylella fastidiosa Temecula1] gi|182631735|gb|ACB92511.1| integrase family protein [Xylella fastidiosa M23] gi|307580060|gb|ADN64029.1| integrase family protein [Xylella fastidiosa subsp. fastidiosa GB514] Length = 339 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 53/329 (16%), Positives = 98/329 (29%), Gaps = 23/329 (6%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 P + G + YY+ G R P + + L + Sbjct: 12 PRFRVRPQKSGVVYYYYDHGGKPRKETPLGRDYGLAIKRWAELEHAQITPAI-------A 64 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR 126 T + + YR A N++ +++ D + I +IR ++ R Sbjct: 65 VTFRHVAERYRAEVTPTK-AYNTQRVEHRCLAPLLKFFDDPPAPFEAIKPVNIRQYLDWR 123 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 A + ++ L+ W + + +R R +D + Sbjct: 124 TSK-VIANREVSVFSHLWNW--ARSKGITDLPNPCGGIRRNKATGRDVYVDDTTYRSVYQ 180 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246 + R A + +G R SD +H+ N I KTG + + + L+ Sbjct: 181 AADQTLRDAMDLAYLTGQRVSDVVSMDERHIVNGALEICQAKTGAKLAITVTGELAVLIK 240 Query: 247 MTPIGKETFFINNDKQKM-------NATQFSIWFKAKATKAGVNK---SAHGVRKFSATI 296 K + + + + + F AGV K +R +AT Sbjct: 241 RIFDRKRGMKLRSTRLIVDAEGLELSRIGLRYRFDKARAAAGVAKEVFQFRDLRAKAATD 300 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKG 325 AD + A G +V E Y + Sbjct: 301 KADLAGDIRQAQAQLGHASVTMTEHYVRK 329 >gi|15618932|ref|NP_225218.1| site-specific tyrosine recombinase XerD [Chlamydophila pneumoniae CWL029] gi|15836555|ref|NP_301079.1| site-specific tyrosine recombinase XerD [Chlamydophila pneumoniae J138] gi|16752001|ref|NP_445367.1| site-specific tyrosine recombinase XerD [Chlamydophila pneumoniae AR39] gi|34223088|sp|Q9Z6N5|XERD_CHLPN RecName: Full=Tyrosine recombinase xerD gi|4377356|gb|AAD19161.1| Integrase/recombinase [Chlamydophila pneumoniae CWL029] gi|7189741|gb|AAF38621.1| integrase/recombinase XerD [Chlamydophila pneumoniae AR39] gi|8979397|dbj|BAA99231.1| integrase/recombinase [Chlamydophila pneumoniae J138] Length = 301 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 39/284 (13%), Positives = 84/284 (29%), Gaps = 29/284 (10%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMR 141 L S ++ + S + I+ + E ++ + L +++ Sbjct: 24 RGLCQQSIAAYRQDISSFLTISAISSPQDISQNSVYIFAEELYRRKEAETTLARRLIALK 83 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM--------QQFKSFWSEGSQPR 193 V F + Q+ + P + E PK T +++ Q K+ + Sbjct: 84 VFFLFLKDQQLLPYPPII--EHPKIWKRLPSVLTPQEVDALLAVPLQMEKNPRHLAFRDT 141 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---ELPDGFMKLLAMTPI 250 L +G+R S+ C + H+ ++ + + + T + + L Sbjct: 142 AILHTLYSTGVRVSELCDLRLGHVSDDCIRVTGKGSKTRLVPLGSRAREAIDAYLCPFRD 201 Query: 251 GKETFFINNDKQKMNATQF----SIWFKAKATKAG----VNKSAHGVRKFSATISADAGA 302 + + D ++ S ++ A S H +R AT D A Sbjct: 202 QYQKKNPHEDHLFLSTRGHKLERSCVWRRIHNYAKQVTSKPVSPHSLRHAFATHLLDNKA 261 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346 + G + E YT A + + + Sbjct: 262 DLRVIQEMLGHARIASTEVYTHVA-----ADSLIEKFLAHHPRN 300 >gi|257884210|ref|ZP_05663863.1| integrase [Enterococcus faecium 1,231,501] gi|257820048|gb|EEV47196.1| integrase [Enterococcus faecium 1,231,501] Length = 380 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 52/379 (13%), Positives = 122/379 (32%), Gaps = 52/379 (13%) Query: 13 KERTRHGKIIYYFR------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 + + ++G + F+ G+ ++ + T A AL + E ++ Sbjct: 6 QYKKKNGDKAWKFQAYLGINPETGKSVKTTRRNFKTQREAK-LALARLQSEYENNLLKKE 64 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVES 125 KP T + + + ++ ++ + E F ++ + GD +IT I+ ++ Sbjct: 65 KPKTYRDVYDLWMTEYK-RTVRGSTLLKTERIFKNHVLEELGDIYISEITPIKIQKLMDK 123 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ---- 181 + +A + + ++FK+AVR + NP ++ +PKR+ + D +Q Sbjct: 124 WANKYDTAPKMMNYTGLVFKYAVRFGIIESNPTDAIRKPKRRKKATVEEPFYDKKQLKLF 183 Query: 182 -FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----------------IFS 223 + + + + F L +G+R ++ + + Sbjct: 184 LDELYNQPNLKIQAFFRLLAMTGMRKQEAGALEWRDIDFKAKTVNIYKAVTRTANGLEID 243 Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF-----KAKAT 278 + I KLL +A + Sbjct: 244 TTKTVGSSRIISIDQGTLDKLLEWKEAVLPPSDEWLIFGHSSAKNPHDIMSLDTSRKWLL 303 Query: 279 KAG-----------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGA 326 + HG R A++ + GA+ E+ G + + TY + Sbjct: 304 NIQDQMDKKQKKKLPRITVHGFRHTQASLLIEMGASLKEVQFRLGHEDIQTTMNTYAHVS 363 Query: 327 DRIRLGIKN-SRRISSVVD 344 +L + + + + +D Sbjct: 364 ---KLAKEQLADKFNKFID 379 >gi|225871254|ref|YP_002747201.1| integrase [Streptococcus equi subsp. equi 4047] gi|225700658|emb|CAW95231.1| putative integrase [Streptococcus equi subsp. equi 4047] Length = 405 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 54/366 (14%), Positives = 113/366 (30%), Gaps = 55/366 (15%) Query: 11 VTKERTRHGKIIYYFR-------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63 V K ++ G I Y+ + G + A+ +A+ + + Sbjct: 3 VHKYQSTKG-ITYFVKVYLGLNDYGKKKYYTKRGFKTRKAAKAHETAVNHQLNSGTFAHL 61 Query: 64 PRKKPTTLKWLISEYRKSAH---WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 + T + L + ++ + A + + I+ G+ KI+ + Sbjct: 62 TAQTTYTYQELYQRWYEAYKDTVETTTAAKTADLYR---LHILPTFGEKKISKISPLDCQ 118 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-IRPWTKEDM 179 + + + + + Q + F++A+ ++ NP V PK K WT ++ Sbjct: 119 TFITDKAKSFKNMKQIKSYTSKTFEFAINMNHIERNPMSKVIMPKLKKTVSENYWTVNEL 178 Query: 180 QQFKSFWSEGSQPRLAFEFLL--YSGLRCSDSCRAGVQ----------------HLQNNI 221 F + E + F L YSGLR + + + + Sbjct: 179 HHFLTIILENEPYKHYALFRLLAYSGLRKGELYALKWEDFDSENQLLTVSKSLGRIDGHA 238 Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTP--------------------IGKETFFINNDK 261 T+ T ++ ++ L D +L + + Sbjct: 239 IEKGTKNTFSVRSIYLDDETCSILNKWKQETSKEKGQLSVQPLSLDKEFMFTYCNRDGEI 298 Query: 262 QKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA- 319 + ++A + K K + K S HG R AT+ + G G + Sbjct: 299 EPLHADYINNILKRIIRKHNLKKISPHGFRHTHATLMIEMGIDPVNTAKRLGHASSQMTL 358 Query: 320 ETYTKG 325 +TY+ Sbjct: 359 DTYSHS 364 >gi|204929529|ref|ZP_03220603.1| phage integrase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204321248|gb|EDZ06448.1| phage integrase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 341 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 46/342 (13%), Positives = 93/342 (27%), Gaps = 47/342 (13%) Query: 11 VTKERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 +T + +GK + Y G+R+R A+ + K+ ++ + Sbjct: 1 MTIRKQPNGKWLCECYPSGRDGKRVR-KQFATKGEAIAFENFTMDEVNKKPWLG-EKDDR 58 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVES 125 L +I ++ SL + + + I GD ++T E+ Sbjct: 59 RQLSEVIEQW------HSLYGQTLADPKRLMSKLSIICHGLGDPIASELTAGDFTKYREA 112 Query: 126 R--------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 R P + ++ +F + + + L+ + EG Sbjct: 113 RLKGEVRSEDGALMSPVKPRTVNLEQRNLSSVFGTLKKLGHWSAPNPLAGLPTFKIAEGE 172 Query: 172 RPWTKEDMQQFKSFWSEGSQ---PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228 + D + SQ + + L +G R S++ + + K Sbjct: 173 LAFLAPDEIKRLLDACADSQSPSLLMITKICLSTGARWSEAENLQGHQVSKYRITYTKTK 232 Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---- 284 TV + + T F+ +AG+ Sbjct: 233 GKKNRTVPISQDLYDEIPRNRGKLFTPC-------------RKAFERAIKRAGIELPEGQ 279 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 H +R A+ G L G + Y A Sbjct: 280 CTHVLRHTFASHFMMNGGNILVLRDILGHADIKMTMIYAHFA 321 >gi|312904161|ref|ZP_07763329.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0635] gi|310632637|gb|EFQ15920.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0635] Length = 408 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 51/396 (12%), Positives = 106/396 (26%), Gaps = 71/396 (17%) Query: 11 VTKERTRHGKIIYYFRKGHGR--------RIRLPYPHESTFIPAYMSALTGSTPKREYIN 62 + + ++G+ + + +GR +I + G E++ Sbjct: 4 IKSYKLKNGQERWEYFVSNGRSNGTGRQQKIHKRGFRSHKEALKAAKIIEGQIASEEFVK 63 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRS 121 + T+ ++ + ++ SRI + I G++ K + Sbjct: 64 -ENPQKMTISKFMNIWINEYK-NNVKEGSRIVYRDAIRMYIDPYIGNYQLNKYKPADHQK 121 Query: 122 GVESR-----------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP------ 164 + S + ++ ++ FK A + +V NP VE P Sbjct: 122 FINSLFTNKELGKNKNGLSYNTVKIVNAALSNAFKKAQKLGFVKSNPTYLVEFPLDKVKE 181 Query: 165 ---KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221 K K +E++ + + + F + GLR + + Sbjct: 182 KTNKEKKLEFYTLEQENLFLDTARNFDEYMWYVFFLIIFDLGLRKGEVMALRWFNFDFRD 241 Query: 222 FSIKTQKTGTIITVELPDGFMK----------------------------------LLAM 247 + K + +L M Sbjct: 242 NILTFDKQRLYRKERPGQVILDDVKTDAGKRSLKMTNRVRNSVLELYGINYDLTSNVLPM 301 Query: 248 TPIGKETFFINNDKQ----KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGA 302 T ++ FIN+ + + + KA + K H R +A AG Sbjct: 302 TNSNQDFLFINHRGKNVGLPIRQRSVDTAWHRIIQKANLPKIRIHDGRHTNAARLRQAGV 361 Query: 303 TAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSR 337 ++ G K V E Y A+ + Sbjct: 362 PLEDIKDMLGHKNVKTTEIYAHVSAEVKERAVNKLE 397 >gi|169633091|ref|YP_001706827.1| putative phage integrase [Acinetobacter baumannii SDF] gi|169151883|emb|CAP00727.1| conserved hypothetical protein; putative phage integrase [Acinetobacter baumannii] Length = 402 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 60/386 (15%), Positives = 108/386 (27%), Gaps = 55/386 (14%) Query: 2 TPSLRLPPFVTKERTRHGKIIYYFRKGHGR-RIRLPYPHESTFIPAYMSALT-------- 52 T S LP R R GKI F+ R L Sbjct: 4 TSSSGLPKG---TRARSGKIQINFKWNDKREWFTLDLIDTPANFIKAAKIREDFVNKAKY 60 Query: 53 ---GSTPKREYINSPRKKPT------------TLKWLISEYRKSAHWGSLAVNSRISFES 97 + P KK T EY + ++ + S Sbjct: 61 GILKIEDIKAVTAKPIKKADASQKTLPASNAPTFAHYAQEYL--YNLSDHKQGTKKKYLS 118 Query: 98 YFDQI-IRKSGDFDYRKITTKHIRSGVESRKHT-PSSAIQFLTSMRVLFKWAVRQEYVAI 155 +++ + D IT++ +R+ V R+ + + L +R +F+ A E + Sbjct: 119 ILERLWMPLFEDMPINTITSQMLRTAVNGREWSSAKTRNDALIPLRGVFELACDDEVIDK 178 Query: 156 NPCLSVERPKRKTEGIRPWTKED-----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210 NPC ++ K + + P+ + + + + S+ F ++G R S+ Sbjct: 179 NPCDRLKNQKTQEDEPDPFNEMEKEIILNWLKEKYISDYPTVYWYFVVAFWTGCRPSEII 238 Query: 211 RAGVQHLQNNIFSIKTQK------------TGTIITV------ELPDGFMKLLAMTPIGK 252 Q + I K T V ++LL Sbjct: 239 ALTWQDVDFLNKQIYINKGRVNGVQQETTKTNKARFVDLNDFAFEAFQQLRLLTYLKYEH 298 Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA-HGVRKFSATISADAGATAHELMATY 311 K+ S F A G+ + R AT+ G + + Sbjct: 299 VFICDETGKEFTTQKSLSEKFVASLKANGIRYRPAYNTRHTYATVCLMNGLNPVYVASQL 358 Query: 312 GWKTVDQAETYTKGADRIRLGIKNSR 337 G V Y K + + + ++ Sbjct: 359 GHSLVMLMMRYAKWINSDKNKEEIAK 384 >gi|310829805|ref|YP_003962162.1| hypothetical protein ELI_4257 [Eubacterium limosum KIST612] gi|308741539|gb|ADO39199.1| hypothetical protein ELI_4257 [Eubacterium limosum KIST612] Length = 304 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 47/307 (15%), Positives = 95/307 (30%), Gaps = 40/307 (13%) Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 K TL+ + E + A ++ + S+E I G +ITTK R+ + Sbjct: 2 KTDITLETWLGE--QEADVKGSSLKTYKSYERV--HIRPFLGHLYLAEITTKKQRAFKKQ 57 Query: 126 RKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + + + L+ +R L K ++ + + E P +E + Sbjct: 58 LCESLADKTVRDILSYLRTLLK--RAKQKGYTVCIKTPKTAVEWREKEVPDFQEHKALSE 115 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------------------NNI 221 + + +GLR + V+ + + Sbjct: 116 KLRHSQKPVDMGILLAMSTGLRLGEVLGLRVKDVDLRASVLHVRANRQRIYDPKTNTYPV 175 Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI------NNDKQKMNATQFSIWFKA 275 + + ++ L LA N + +A F+A Sbjct: 176 REQTPKTQKSCRSIPLHPALKNALAHYLKNMGNPDKEKPLIANRQGRAYDARTLQRRFQA 235 Query: 276 KATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA-DRIRL 331 + G+ + H +R AT + + GA+ H L G +V TY ++ RL Sbjct: 236 VKKELGLRPGVTFHSLRHSFATRALELGASIHTLSELLGHSSVAFTLNTYGHSVTEQKRL 295 Query: 332 GIKNSRR 338 ++ + Sbjct: 296 EMEKIAK 302 >gi|86739910|ref|YP_480310.1| phage integrase [Frankia sp. CcI3] gi|86566772|gb|ABD10581.1| phage integrase [Frankia sp. CcI3] Length = 394 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 43/359 (11%), Positives = 94/359 (26%), Gaps = 35/359 (9%) Query: 18 HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77 G+ + G++ P L R P + TL + Sbjct: 15 SGRYQVRYPGPDGQQRTAPETFARKSEAERYLTLIEGQILRGEWIDPERGKVTLTDYAAR 74 Query: 78 YRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSA 133 + +L + + I G K+TT IR + + Sbjct: 75 WI--VERPNLRPRTIGLYSGLLTRHITPYIGGIPIGKLTTPIIREWRTKLLESGVSVGTT 132 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193 + +R + AVR++ + + ++ RP G + R Sbjct: 133 AKAYRLLRAVLMTAVREDELIRTNPCRIPGADQENAPERPVLTVSQVFAL-AEKLGGRYR 191 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-------------TGTIITVELPDG 240 ++ LR + + L + + ++ Sbjct: 192 ALVLVTTFASLRWGEVAALQRRDLDTDDGIVHIRQSLVEIGGQGVVLGPPKSRAGVRTVS 251 Query: 241 FMKLLAMTPIGKETFFINNDKQKM----------NATQFSIW--FKAKATKAGVN-KSAH 287 ++ ++ +D F + G+ H Sbjct: 252 LPAVILPWLRIHLAEYVADDPAAFVFTGPKGGFLRRGNFRKLVGWSDAVAAIGMPNLHFH 311 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346 +R T+++ GA+ +LM G + A Y + I + +S+V+ + Sbjct: 312 DLRHTGNTLASRTGASLRDLMTRMGHDSPRAALIYQHASTEADAAI--ADALSAVLAAQ 368 >gi|255520384|ref|ZP_05387621.1| integrase [Listeria monocytogenes FSL J1-175] Length = 381 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 51/369 (13%), Positives = 113/369 (30%), Gaps = 50/369 (13%) Query: 9 PFVTKERTRHGKIIYYFRKG------HGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62 + +I Y FR G+R + T A M E Sbjct: 3 KRIKSYLNSKNEIRYMFRVYAGIDNMTGKRKQTTRRGFKTEREAKMELKRIEMQIFEEGG 62 Query: 63 -SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIR 120 +KKP + + + + ++ ++ + +F+ I+ D KI + Sbjct: 63 LKTQKKPLKFEEVYFTWLELYT-QTVKESTLERTKIFFNHHILPVFSDKFIDKIDIHFCQ 121 Query: 121 SGVESRKHT-PSSAIQFLTSMRVLFKWAVRQEYVAINPCL-----SVERPKRKTEGIRPW 174 + + + P+S + +FK+A+ + +P E +++ + I + Sbjct: 122 QVINTWSKSNPASYKRLKNLTSRVFKYAISLHLIENDPFAFVVVPRGEMIEKEEKDITFY 181 Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-- 232 K +++ F + + F L ++GLR S++ + N + KT + Sbjct: 182 DKYELRSFLDTVKDDTFKYTFFYLLAFTGLRKSEALALTWNDVDLNNKRLYVNKTLSRGE 241 Query: 233 ---------------ITVELPDGFMKLLAMTPIGKETFFI---------------NNDKQ 262 + + + +L + N Sbjct: 242 HARILVNTTKTKAGKRDISIDASTVDVLKKWKSYQRGNHHILRLDKVQIIFDNEGNYYNP 301 Query: 263 KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ET 321 + FK + ++HG R A++ +AGA+ ++ G + Sbjct: 302 SSTYSWLDNIFKHHTELKKI--TSHGFRHTHASLLFEAGASLKDVQERLGHADIQTTSNI 359 Query: 322 YTKGADRIR 330 YT + Sbjct: 360 YTHVTQEKK 368 >gi|24374071|ref|NP_718114.1| phage integrase family site specific recombinase [Shewanella oneidensis MR-1] gi|24348549|gb|AAN55558.1|AE015694_7 site-specific recombinase, phage integrase family [Shewanella oneidensis MR-1] Length = 287 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 35/267 (13%), Positives = 78/267 (29%), Gaps = 21/267 (7%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRK 127 L+ ++ + +R ++ Q+ + + IT + + + R Sbjct: 2 SSLLQQFHDEISLRGYSARTRNAYLYAITQL-QHYANQPLDNITDEQLTAYFRYLNLERH 60 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 H+ ++ L + ++ +++++ + + Sbjct: 61 HSRATLKLQLNGIHFFYEHVLKRDFTIQLSLPKR------PHKLPQLLSCQDIAALLYHC 114 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLL 245 + + R GLR S+ V + +K + V L + LL Sbjct: 115 QNLKQRAMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGKGACDRWVILSPTLLILL 174 Query: 246 AMTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297 ++ ++ + F A A + S H +R AT Sbjct: 175 RQYWQAYHPVEWLFASTYHDVVYPLHESTFRKALAKAARLASITKPCSPHSLRHAYATHQ 234 Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324 AG H+L A G ++ E Y Sbjct: 235 LQAGMPLHQLQAQLGHHSIKSTERYLH 261 >gi|227539186|ref|ZP_03969235.1| phage integrase family protein [Sphingobacterium spiritivorum ATCC 33300] gi|227240868|gb|EEI90883.1| phage integrase family protein [Sphingobacterium spiritivorum ATCC 33300] Length = 406 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 34/284 (11%), Positives = 77/284 (27%), Gaps = 30/284 (10%) Query: 79 RKSAHWGSLAVNSRISFESYFDQIIRKSG------DFDYRKITTKHIRSG----VESRKH 128 ++ N+ + + + D R I I Sbjct: 120 MEALLGKGFKPNTLKGYNTSVAHLTSYLEKCYGETDIAIRHIDHAFITGYEFFLRSDMGC 179 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK--EDMQQFKSFW 186 + SA +++ +R + + ++ P + + E + + + Q + Sbjct: 180 SVVSAAKYMKHLRKIINQCLAHRWITETPFAFYKTKAKPREKEFLTSDELDRIAQKEFSI 239 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD-----GF 241 + + R F F Y+GL +D + + I T T + Sbjct: 240 TRLAHVRDIFVFCCYTGLSYADVQKLQKTDIAKGIDGRLWVLTSREKTKTSSNIPLLPQA 299 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS-A 298 ++++ ++ + + + K A G+ + H R AT Sbjct: 300 LEIIERYADYPSCVARGMVLPVLSNQKMNSYLKEIADLCGITKKLTFHMARHTFATTVTL 359 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGAD----------RIRLG 332 + G + + Y K D + RL Sbjct: 360 ANNVPIETVSKMLGHTNIKTTQHYAKLLDTRIGSDMDALQKRLA 403 >gi|126668746|ref|ZP_01739695.1| integrase/recombinase [Marinobacter sp. ELB17] gi|126669114|ref|ZP_01740043.1| integrase/recombinase [Marinobacter sp. ELB17] gi|126626410|gb|EAZ97078.1| integrase/recombinase [Marinobacter sp. ELB17] gi|126626783|gb|EAZ97431.1| integrase/recombinase [Marinobacter sp. ELB17] Length = 338 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 32/311 (10%), Positives = 79/311 (25%), Gaps = 37/311 (11%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--------FDYRKITTKHIRSG 122 ++ +Y + + ++ ++ + D + + + Sbjct: 13 VESFFRDYLQ--RLRGASAHTVRAYRDTLRLLFIYLADTKDSTVANLRLNDLHVDAVAAF 70 Query: 123 ----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT--- 175 R ++ ++ ++R K +R + + K T Sbjct: 71 LTQLESDRANSIATRNCRRAAIRSFCKHLIRVDLPHAEQYQRILALPAKKCQQNLATYLE 130 Query: 176 ----KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKT 229 + Q G + FL +G R S++ L K Sbjct: 131 AAEVHAILDQPDCRTVLGQRDYGLLLFLYNTGARISEALTVCCADLHLTPPRQVRLHGKG 190 Query: 230 GTIITVELPDGFMKLLAMTPIGKE-----TFFINNDKQKMNATQFSIWFKAKATKAGV-- 282 L + L P ++ F+N Q + + + A Sbjct: 191 KKDRLCPLWRDTAQALLRLPTVRDGAPGAFVFVNRQGQPLTRDGAAYLLQKYVVAAIPTA 250 Query: 283 ------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY-TKGADRIRLGIKN 335 + H +R A +G + G ++ Y T R ++ Sbjct: 251 PTLQRRKITPHVLRHSCAVALLQSGVDVTVIRDYLGHASIATTSRYLTTNLQMKREALEA 310 Query: 336 SRRISSVVDSD 346 + + + ++ Sbjct: 311 FWKRAGIEPTN 321 >gi|239622960|ref|ZP_04665991.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239522612|gb|EEQ62478.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 395 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 51/366 (13%), Positives = 100/366 (27%), Gaps = 61/366 (16%) Query: 17 RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76 + GK + G R + + L + + ++ T+ Sbjct: 18 KDGKYAARYTAKDGSRKEKHFDTLPEA----RNWLADAQYEDKHDVCNTSSEMTVDAWFE 73 Query: 77 EYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSA 133 + + LA N+R ++ Y I G+ + H + + + T S+ Sbjct: 74 FWITNLIA-DLAPNTRRNYRERYQKNIQPVIGNMRLCDVKPMHCKIVLNRMEATYAGSTI 132 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVER--PKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 Q +M +F+ AV + + +P V P R + I+ T E+ F S Sbjct: 133 RQAYIAMGTMFRAAVMNDMLTKHPMDGVRYTKPVRAVDDIKFLTVEEQTLFLETAKR-SH 191 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG---------FM 242 + LL +GLR S+ + ++ KT E + Sbjct: 192 NYRQYVLLLETGLRTSEMIGLTWDAIDWKKRTLTVNKTLEYRHSEGIWRAGPPKTKTSYR 251 Query: 243 KLL---------------------------------------AMTPIGKETFFINNDKQK 263 +L + F + Sbjct: 252 TILLTKRAYDVLKSCYDERFTRKESELLSQILEYVDRRTGQTEYLCMRDLVFINFRTGEP 311 Query: 264 MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-T 321 + + +A + + H +R AT + + G L G ++ Sbjct: 312 AKNSSYDTHLYKLCDEAKIKRFCMHALRHTYATRAIERGVMPKVLQKLLGHASIKTTMDR 371 Query: 322 YTKGAD 327 Y D Sbjct: 372 YVHVTD 377 >gi|149920837|ref|ZP_01909300.1| Phage integrase [Plesiocystis pacifica SIR-1] gi|149818355|gb|EDM77807.1| Phage integrase [Plesiocystis pacifica SIR-1] Length = 369 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 45/351 (12%), Positives = 93/351 (26%), Gaps = 36/351 (10%) Query: 10 FVTKERTRHGKII--YYFRK----GHGRRIRLPYP---HESTFIPAYMSALTGSTPKREY 60 + + + G++ + G+R + + A+ L Sbjct: 4 YKKRWTGKDGRVRTKWMVHIKHTGPDGKRKEIRRVSPVNTRRGAEAFERELRDKLFPGAR 63 Query: 61 INSPR----KKPTTLKWLISEYRKSAHWGSLA------VNSRISFESYF-DQIIRKSGDF 109 R + TL+ E+ + + +I G+ Sbjct: 64 GKDKRTQHIRSAPTLEDFAPEFLAFQASPGASRKGPNKPGELREKRRTLDNHLIPAFGEL 123 Query: 110 DYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAI-----NPCLSV 161 +I + I + + + S+ L ++ L A R E + P Sbjct: 124 RLDEIRARDIDRYITRKHADGLSTSTISNHLIVLKRLLNVARRWELLDRIPEIPTPKKPA 183 Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221 + R +Q++S G + L L R D V+ Q Sbjct: 184 RTDFLSKDEARALLVGAEEQWRSLVLLGLRTGLRLGELRGLRWRDVDLEGGRVRVEQAVT 243 Query: 222 FSIKTQKTG-TIITVELPDGFMKLLAMTPIGKETFFI-----NNDKQKMNATQFSIWFKA 275 + +V L + LA+ + +D + + Sbjct: 244 NAGIGTPKSGKGRSVPLARDIREALAVRRGPRRRKPDTLVFAQSDGRPLAHNTIGRALTR 303 Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 A AG+ + + H +R A+ + AG + G + Y Sbjct: 304 AAEAAGIERRITPHVLRHTFASHAVLAGVPIRIVQGWLGHADITMTMRYAH 354 >gi|323937177|gb|EGB33457.1| phage integrase [Escherichia coli E1520] Length = 375 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 32/271 (11%), Positives = 77/271 (28%), Gaps = 12/271 (4%) Query: 63 SPRKKPTTLKWLI-SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121 + + + T++ I + + + + G R IT + Sbjct: 86 AVQSRRFTVEQAINDLWLPDLQLYKKSP--QSELSKLNLYVRPFWGKRQLRDITAGELEQ 143 Query: 122 GVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + PS+ + L + + AVR ++ +P V K R + ++ Sbjct: 144 YAAGLREKLRPSTVNRILAILSKICSLAVRAGWITHSPMSHVRYLKENNIRYRTLSATEI 203 Query: 180 QQFKSFWS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 +F + + + + LY+G+R + C ++ ++ + T + P Sbjct: 204 PRFINAATALQTPAADSILLALYTGMRIGEVCTLKWEYWHPDMHQLILPDTKSGHPFTCP 263 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQ-----FSIWFKAKATKAGVN-KSAHGVRKF 292 + + ++ F A ++ H +R+ Sbjct: 264 LAPPAIAVVQCQQDLMLSKTYIFPQLTDNARPLAYPRATFARICRDANIDNLRMHDLRRT 323 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYT 323 AT A ++ Y Sbjct: 324 FATRVLQATGDIAIASHLLNHHSLTATRRYA 354 >gi|323146177|gb|ADX32415.1| phage integrase family protein [Cronobacter phage ENT90] Length = 345 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 49/317 (15%), Positives = 82/317 (25%), Gaps = 40/317 (12%) Query: 29 HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA 88 G+RIR F + + N + TLK LI+ + SAH +L Sbjct: 21 KGKRIR------KKFATKGEALAYEQHAVQLPWNEEQTDRRTLKDLITSWY-SAHGITLK 73 Query: 89 VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR------------KHTPSSAIQF 136 + G+ + E R + +P + Sbjct: 74 DG--EKRQLAMLHAFECMGEPLAVDFDAQMFSRYRERRLKGDFARSSRVKEVSPRTLNLE 131 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---R 193 L R +F R L RP R E W S Sbjct: 132 LAYFRAVFNELGRLGEWKGENPLRHIRPFRTEESEMAWLTHSQIAHLLAECRNSDQADLE 191 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253 + L +G R S++ + + K TV + + +++ G+ Sbjct: 192 TVVKICLATGARWSEAEGLKKSQISKYKITYIKTKGRKNRTVPITESIYRIIPENKTGRL 251 Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVNKSA----HGVRKFSATISADAGATAHELMA 309 F++ + G+ A H +R A+ G L Sbjct: 252 FADCYG------------AFRSALERTGIELPAGQLTHVLRHTFASHFMMNGGNLLVLQR 299 Query: 310 TYGWKTVDQAETYTKGA 326 G + Y A Sbjct: 300 VLGHTDIKMTMRYAHFA 316 >gi|293413792|ref|ZP_06656441.1| prophage DLP12 integrase [Escherichia coli B185] gi|291433850|gb|EFF06823.1| prophage DLP12 integrase [Escherichia coli B185] Length = 387 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 51/378 (13%), Positives = 112/378 (29%), Gaps = 56/378 (14%) Query: 17 RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76 R+ + G+RI+ A T + Sbjct: 6 RNEIWYASYSLPGGKRIKESL-GTKDKRQAQELHDKRKAELWRVEKPGDLPDVTFEEACL 64 Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS----- 131 + + S S +S + + + I+ I S V + + Sbjct: 65 RWLEEKADKK----SLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWK 120 Query: 132 ------------------------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167 + + L ++ + + A +++ + ++ P + Sbjct: 121 QKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILR-AAERDWKWLEKAPVIKIPAVR 179 Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFS 223 + +R KE+ ++ E + +F L +GLR S+ Q + + Sbjct: 180 NKRVRWLEKEEAKRLIDECPEPLKS--VVKFALATGLRKSNIINLEWQQIDMQRRVAWVN 237 Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI------------ 271 + K+ I V L D K+L + + K A S Sbjct: 238 PEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKT 297 Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 + + +AG+ + H +R A+ +G L GW++++ Y A Sbjct: 298 SWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNH- 356 Query: 331 LGIKNSRRISSVVDSDDP 348 +++R+I + + P Sbjct: 357 -LTEHARKIDDIFGDNVP 373 >gi|17548311|ref|NP_521651.1| site-specific tyrosine recombinase XerC [Ralstonia solanacearum GMI1000] gi|34222935|sp|Q8XTL6|XERC2_RALSO RecName: Full=Tyrosine recombinase xerC 2 gi|17430557|emb|CAD17241.1| probable tyrosine recombinase xerc 2 protein [Ralstonia solanacearum GMI1000] Length = 347 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 43/306 (14%), Positives = 92/306 (30%), Gaps = 30/306 (9%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESRK 127 L + + ++ + ++ + + + G +T + Sbjct: 19 LTRYMEAHFEALLVTGYSADTVRARRISIRRFIVWCEERGIAQPADVTRAVLERYQRHLF 78 Query: 128 H---------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + T S L ++ FKW R+ ++ NP ++ PK R Sbjct: 79 YYRKPNGAPLTLGSQHGALAPLKTWFKWLARENHILYNPASELDLPKLPKHLPRAILSVQ 138 Query: 179 MQQFK-----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGT 231 + G + R E L +G+R + + + ++ K Sbjct: 139 EVEAILAEADPATPYGLRDRAMLELLYSTGIRRMEVAGLALYDVDATRRLAFVRDGKGAK 198 Query: 232 IITVELPDGFMKLLAMTPIGKETF---------FINNDKQKMNATQFSIWFKAKATKAGV 282 V + + L + F+ + + ++ + K AG+ Sbjct: 199 DRVVPVGVRALAWLDRYLLEARPQLIVAEREALFVTDYGEPVSPEYVASRVKRYMEFAGI 258 Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 + H +R AT +AGA L A G ++ E YT + I ++ + Sbjct: 259 QKPGATHLLRHAMATHMLEAGADVRVLQALLGHAQLNTTEIYTHVSIEHLRAIHDATHPA 318 Query: 341 SVVDSD 346 + D Sbjct: 319 RLQRED 324 >gi|323126847|gb|ADX24144.1| putative transposon integrase [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 414 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 48/399 (12%), Positives = 106/399 (26%), Gaps = 74/399 (18%) Query: 13 KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 + + +G Y +R R + + L K K T++ Sbjct: 18 EYQRPNGTYEYRWRDKCRRNHTIYAKSLAELREKKNLIL-----KDTLSGIKISKNITVR 72 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVE----SRK 127 L +++ L N+ +++ ++ + G+ + + IRS R Sbjct: 73 DLYKKWK--VLKQGLKDNTFKNYQYLYEYFVDDNLGNVLIKNLKKSDIRSFYNYLAEERN 130 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS-----VERPKRKTEGIRPWTKEDMQQF 182 ++ T + + AV +Y+ NP + + + + T + F Sbjct: 131 VKVNTIDNIHTVLHQVLDLAVDDDYILKNPSDNALKELKQSRTNGKKSRKALTLAEQNLF 190 Query: 183 KSFWSEGSQ---PRLAFEFLLYSGLRCSDSCRAGVQHLQ--------------------- 218 + F ++ F +L++GLR + + Sbjct: 191 EDFLRTNNKYKGWYPIFITMLWTGLRVGEVTGLRWDDIDFNNNTISVNHTLVYYQTRTER 250 Query: 219 -NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK---------------ETFFINNDKQ 262 + + TV L + L M + F+N Sbjct: 251 GCDFTVNTPKTKAGERTVPLLPKVKEALKMEKQRQTELEISCRVVINGFTNFIFLNRFGD 310 Query: 263 KMNATQFSIWFKAKATKAGV--------------NKSAHGVRKFSATISADAGATAHELM 308 + + K N S H +R T +AG + Sbjct: 311 LYHQGTLNKALKRIIRDCNFSVLDGKINSEVTLPNFSNHSLRHTFTTRMVEAGTNLKAMQ 370 Query: 309 ATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVVDSD 346 G + Y + + L + ++++ Sbjct: 371 DILGHSDISTTMNIYAEAS--KDLKEIEMENFGNKIENN 407 >gi|167920132|ref|ZP_02507223.1| phage integrase [Burkholderia pseudomallei BCC215] Length = 382 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 50/375 (13%), Positives = 97/375 (25%), Gaps = 51/375 (13%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 R Y F+ + A +P TLK Sbjct: 5 RRNNSKNWYYQFQIQGKK--FFGSTGTPNKTKAAQVEREMRNRAHAEQYLGDAQPITLKD 62 Query: 74 LISEYRKSAHWGSLAVNSRISFESYF--------DQIIRKSG---DFDYRKITTKHIRSG 122 + +Y ++ S N + G D ++TT+ + Sbjct: 63 ALEQYVEARSETSYHRNMCSIVRKTLGYKLHPRTKAKLPCYGMSPDRLLHELTTRDVDLL 122 Query: 123 VESRK---HTPSSAIQFLTSMRVLFK------WAVRQEYVAINPCLSVERPKRKTEGIRP 173 V RK P++ + +R + V +E + S + Sbjct: 123 VAKRKAEGDKPATIKHEIGLLRATINEMAKLGFKVSREIIFPELRTSYRLRYLDSSDESA 182 Query: 174 WTKEDMQQFKSFWSEGSQP------------RLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221 E + S+P FLL +G R S+ + + Sbjct: 183 LLLELDPERLKTRINSSKPQTPEMTRNMQDNYDITVFLLDTGCRYSEVANIPWSAINLDT 242 Query: 222 FS---IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW-FKAKA 277 + +++ + L + + + N +S K Sbjct: 243 CTISLYRSKVRNEDVLHMTSRLEAILRRRWEERRTGQRYVFEDRTGNERGYSTKSIKKAI 302 Query: 278 TKAGVN-----------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 +AG+N + H +R A+ AG + +E+ G + Y + Sbjct: 303 ERAGLNDPVLVKERGGRVTLHTLRHTFASKLVKAGVSLYEVSVLLGHSDPKMTQRYAHLS 362 Query: 327 --DRIRLGIKNSRRI 339 D R +K + Sbjct: 363 PNDASRKAVKVIDSL 377 >gi|28198301|ref|NP_778615.1| phage-related integrase [Xylella fastidiosa Temecula1] gi|182680938|ref|YP_001829098.1| integrase family protein [Xylella fastidiosa M23] gi|28056371|gb|AAO28264.1| phage-related integrase [Xylella fastidiosa Temecula1] gi|182631048|gb|ACB91824.1| integrase family protein [Xylella fastidiosa M23] gi|307579406|gb|ADN63375.1| integrase family protein [Xylella fastidiosa subsp. fastidiosa GB514] Length = 339 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 55/329 (16%), Positives = 102/329 (31%), Gaps = 23/329 (6%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 P + G + YY+ G R P + + L + Sbjct: 12 PRFRVRPQKSGVVYYYYDHGGKPRKETPLGRDYGLAIKRWAELEHAQITPAI-------A 64 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR 126 T + + YR A N++ Y + +++ D + I +IR ++ R Sbjct: 65 VTFRHVAERYRAEVIPTK-AYNTQRMHHVYLNYLLQFFDDPPAPFESIKPVNIRQYLDWR 123 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 SA + + L+ W + + +R E R +D + Sbjct: 124 PFK-VSANREVALFSHLWNW--ARSKGITDLPNPCGGIRRNKERGRDVYIDDTTYRAVYQ 180 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246 + R A + +G R SD +H+ N I KTG + + + L+ Sbjct: 181 AADQTLRDAMDLAYLTGQRVSDVVSMDERHIVNGALEICQAKTGVKLAIAITGELAVLIK 240 Query: 247 MTPIGKETFFINNDKQKMNATQFS-------IWFKAKATKAGVNK---SAHGVRKFSATI 296 K + + + ++ F+ AG+ K +R +AT Sbjct: 241 RIFDRKRGMKLRSTRLIVDEKGLGLNWKKLAYRFRKVRAAAGIAKEVFQFRDLRAKAATD 300 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKG 325 AD + A G +V E Y + Sbjct: 301 KADLAGDMRQAQAQLGHASVTMTEHYVRK 329 >gi|325980818|ref|YP_004293221.1| integrase family protein [Nitrosomonas sp. AL212] gi|325533323|gb|ADZ28042.1| integrase family protein [Nitrosomonas sp. AL212] Length = 316 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 45/268 (16%), Positives = 84/268 (31%), Gaps = 30/268 (11%) Query: 91 SRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRKHTPSS---AIQFLTSMRVLF 144 +R ++E+ + +G + + +T HI + + + S L ++ LF Sbjct: 38 TRRAYENALKDFMNFTGIQNPEEFRVVTRAHIIAWRDDLMNRSLSSMSIRHRLAALSSLF 97 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK------SFWSEGSQPRLAFEF 198 ++ + V NP V+RP ++ + D Q K +G + R Sbjct: 98 EYLCEKNTVTHNPVKGVKRPAVESYEGKTPAIGDHQARKLLDAPDGSSLKGKRDRAILAT 157 Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----TIITVELPDGFMKLLAMT------ 248 LLY LR + CR V+ + + K V L L+ Sbjct: 158 LLYHALRRDELCRLKVKDFKQERRGVPHMKISGKGGKTRYVPLHPAASGLIHDYLDAAEH 217 Query: 249 --------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADA 300 ++ + + + K G AH +R +AT + D Sbjct: 218 GLEDTGALFRSTSNNRDKESQKPITPDGVYKLVQKYSEKLGFKIGAHSLRATAATNALDH 277 Query: 301 GATAHELMATYGWKTVDQAETYTKGADR 328 A ++ G + Y R Sbjct: 278 QADIAKVQEWLGHANIATTRIYDHRRTR 305 >gi|238923684|ref|YP_002937200.1| site-specific tyrosine recombinase [Eubacterium rectale ATCC 33656] gi|238875359|gb|ACR75066.1| site-specific tyrosine recombinase [Eubacterium rectale ATCC 33656] Length = 331 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 38/269 (14%), Positives = 90/269 (33%), Gaps = 15/269 (5%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESR 126 L Y + +++ S + K + + KI+T IR + R Sbjct: 52 LPECYETYFVTRKIEGMSMKSLELYNLVLKDFFFKL-NKEICKISTNDIRVYLYKNQQER 110 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + S+ T + F+WA + Y+ NPC +++ K + +P T ++++ ++ Sbjct: 111 NLSNSTLDTKRTIIHAFFEWAANEGYIGSNPCRNIKPIKYERPKRKPLTGIELEKVRNAC 170 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246 + + + E +G R ++ R + + + G + + ++ Sbjct: 171 -DNLKDKALLELFYSTGCRVTEMERLDISDIDFQTKEVLLFGKGDKHRISYLNAKAEIAI 229 Query: 247 MTPIGKETFF-------INNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATIS 297 + ++ + K+G+ + H +R +AT Sbjct: 230 RNYLDSRNDNEEALFVSDRKPYGRLKKPAIEKRIRVLGEKSGIGRRLYPHLIRHTTATDG 289 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGA 326 D G E+ G + Y + + Sbjct: 290 LDRGMPVEEVQQILGHVNIATTMIYAEVS 318 >gi|198284453|ref|YP_002220774.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667286|ref|YP_002427120.1| tyrosine recombinase XerC [Acidithiobacillus ferrooxidans ATCC 23270] gi|198248974|gb|ACH84567.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519499|gb|ACK80085.1| tyrosine recombinase XerC [Acidithiobacillus ferrooxidans ATCC 23270] Length = 314 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 34/281 (12%), Positives = 85/281 (30%), Gaps = 27/281 (9%) Query: 71 LKWLISEYRKSAHWGSL-AVNSRISFESYF---DQIIRKSGDFDYRKITTKHIRSG---V 123 ++ I+++ ++ G + + ++ + + G + ++ +R+ Sbjct: 3 IETAIAQFIETLRQGGRVSPATISAYSRDLHAWARFALQRGQTEIAQMDRGSLRAYLLAE 62 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 SR + S + ++R L++ + NP + P+ + T + + Sbjct: 63 RSRGVSVRSLRRHFAALRALYRHLQQDAPELRNPVSGLAMPRAEQRLPDWLTVDQARLLM 122 Query: 184 S----------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233 G + +L E L S LR S+ + L + +++ G Sbjct: 123 QPAISDTEAAPQDFTGLRDQLILELLYSSALRVSELAGLNLGDLDPHAGTVRVLGKGRKE 182 Query: 234 TVELPDGFMKLLAMTPIGKETF---------FINNDKQKMNATQFSIWFKAKAT-KAGVN 283 + + F+N Q++ + K + G Sbjct: 183 RIVPVGQPAWAALRAYLAARPAVAASDEPALFVNRRGQRLTVRSIQVRVKKLGDARLGQP 242 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R +A+ + + G + YT Sbjct: 243 LHPHTLRHSAASHLLQSSGDLRAVQEYLGHAGIGTTAIYTH 283 >gi|54296054|ref|YP_122423.1| hypothetical protein lpp0072 [Legionella pneumophila str. Paris] gi|53749839|emb|CAH11220.1| hypothetical protein lpp0072 [Legionella pneumophila str. Paris] Length = 406 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 53/360 (14%), Positives = 108/360 (30%), Gaps = 34/360 (9%) Query: 10 FVTKERTRHGKIIYYFR-KGHGRRIR--------LPYPHESTFI-PAYMSALTGSTPKRE 59 + G + FR G+R + + + A G P Sbjct: 25 GLGIRVMPGGGKSWIFRFTFDGKRYKMTLGKYPGIGLKEARELMLDAEHLKEQGINPIEY 84 Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLA-VNSRISFESYFDQIIRKSGDFDYRKITTKH 118 K T+K L + L + + II GD ++ TK Sbjct: 85 AKQQQAKSDNTVKKLAFSWYTQYVEKHLKRPLTVK--KQIDGDIINLLGDRVLDELETKD 142 Query: 119 IRSGVESRKHTPSS--AIQFLTSMRVLFKWAVRQEYVAINPCL--------SVERPKRKT 168 I ++ +S A + L+S++ +F +AV + ++ NP E+P+ + Sbjct: 143 ITEALDKIVKRGASVHANRVLSSLKQMFGYAVSRGTMSTNPASNIRARDIGGHEKPRERV 202 Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228 + + Q R+A + +L +G+R ++ A + + Sbjct: 203 LSLDEIKSLWLFLDSKDSQMAPQTRIAIKIILLTGVRTAELRLAQWSEINFDDSLWTIPA 262 Query: 229 TGTIITVELPDGFMKL-------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 + ++ L L + +Q + K + G Sbjct: 263 MHSKASIVHKVHLSDLTKQLLQQLKSISRSDYVLTGADYRQPLTENALPRAIKRIQERLG 322 Query: 282 VN-KSAHGVRKFSATISAD-AGATAHELMATYGWKTVDQAETY--TKGADRIRLGIKNSR 337 + +AH +R+ AT + + G K TY + + R ++ Sbjct: 323 IPEWTAHDLRRTFATQLGETLQVDPVVIEKCLGHKMPRIMATYNCNEMLPQRREALERWA 382 >gi|325267781|ref|ZP_08134431.1| site-specific tyrosine recombinase XerC [Kingella denitrificans ATCC 33394] gi|324980662|gb|EGC16324.1| site-specific tyrosine recombinase XerC [Kingella denitrificans ATCC 33394] Length = 357 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 44/288 (15%), Positives = 92/288 (31%), Gaps = 17/288 (5%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTPSSAI 134 +Y + + + ++ +++ Q+ + + + R S+ Sbjct: 66 DYLREQTQLNRSAHTLAAYQRDLWQLQTLLPEACENPTAQDFSAALKTLSQRGLNASTLA 125 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---- 190 + LT R K+ ++E +P ++ P++ R +E +Q E Sbjct: 126 RKLTVWRQYAKFVQQKEAADASPAERLKAPRQAQRLPRAIERETLQYLLDQAPEAGDALA 185 Query: 191 -QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMT 248 + E SGLR S+ C + + + + K G V L + L Sbjct: 186 VRDHAVAELFYGSGLRLSELCALNLHDIWLDEGWVSVHGKGGKQRHVPLTQHSIAALRAW 245 Query: 249 PIGKETF------FINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGVRKFSATISADA 300 + T F +++ Q + + A + G + H +R A A Sbjct: 246 LARRTTADSESALFTGRYGKRLTTRQIAKRLQHWAAERGSLQTITPHMLRHSFAGHLLQA 305 Query: 301 GATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISSVVDSDD 347 + G ++ + YTK AD + + + DD Sbjct: 306 SHDLRAVQDLLGHSSLSSTQIYTKLDADHLAQVYDQTHPRARRKPVDD 353 >gi|308234991|ref|ZP_07665728.1| phage family integrase/recombinase protein [Gardnerella vaginalis ATCC 14018] gi|311113898|ref|YP_003985119.1| phage integrase [Gardnerella vaginalis ATCC 14019] gi|310945392|gb|ADP38096.1| phage integrase [Gardnerella vaginalis ATCC 14019] Length = 277 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 26/263 (9%), Positives = 78/263 (29%), Gaps = 4/263 (1%) Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 + P + + ++ + + ++ ++ R + IT + + Sbjct: 3 KIKRKLLPNSWETYVTHWLEYLEASGYTEDTIRCRYYKISRLARLL-NQPPEDITGQQLV 61 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + + + +++R + + + +E + +NP + + + +++ P ++ Sbjct: 62 ELFAHQDWKRETRKGYSSTIRSFYSYMIEEEIIDVNPTVKLPKIRKEYAIPHPCPDYIIR 121 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 + + GLR S+ + + + G Sbjct: 122 GALARVRGNKEYEAMLRLGAECGLRRSEIAQVSSSDIMMLNTHPQLLVHGKGRKERTVPI 181 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADA 300 L + F + A+ + G S H +R AT + ++ Sbjct: 182 APDLAQIIANKHGYMFPGRWTGHVEASYIAHHISQL---LGNGYSTHSLRHRYATNAYES 238 Query: 301 GATAHELMATYGWKTVDQAETYT 323 + G +V+ + Y Sbjct: 239 THDLLLVSKLLGHASVETTQIYI 261 >gi|167462395|ref|ZP_02327484.1| DNA integration/recombination/invertion protein [Paenibacillus larvae subsp. larvae BRL-230010] gi|322383376|ref|ZP_08057161.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321152335|gb|EFX45156.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 413 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 44/342 (12%), Positives = 112/342 (32%), Gaps = 54/342 (15%) Query: 57 KREYINSPRKKPTTLKWLIS-EYRKSAHW--GSLAVNSRISFESYF-DQIIRKSGDFDYR 112 + E + TL+ I E+ +L+ + ++ + ++I+ G + Sbjct: 63 EVEAGEYIAPQKMTLRQFIENEWEPKYASNTENLSPLTYQTYMHFIENRIMPVFGHKNLE 122 Query: 113 KITTKHIRSGVESR------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 I T HI + + K +P + ++ +F A + + NP + Sbjct: 123 DIRTLHIVTFINDLSKPEARKDGKSGKLSPGTIQYIHRVLKNIFNRATEWQLIKTNPIVG 182 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ-PRLAFEFLLYSGLRCSDSCRAGVQHLQN 219 V++PK + + +++ ++ + S+ + RL + G R + ++ Sbjct: 183 VKKPKVEQTEFDFYDEDEAREAIAALSKEPRRWRLLILGSMVGGFRRGELLALEWSNVDF 242 Query: 220 NIFS-----------------IKTQKTGTIITVELPDGFMKLLAMTPIGK---------- 252 + + + + V++PD +M L + Sbjct: 243 DNMTLSINKSISLTKDGRAVEKAPKSKSSKRIVDMPDWYMDELKVHEYEWKKEKLSVGDK 302 Query: 253 ------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAH 305 + F + + T + W+ + + + H +R SAT+ +AGA+ Sbjct: 303 WRGGDRQYVFHAGFGKPFHHTYPTEWWNGFTKRHNLKRVRFHDLRHSSATLLIEAGASMK 362 Query: 306 ELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVVDSD 346 + G Y ++ + + + ++ Sbjct: 363 AVQQRLGHSKHQTTADIYAHVT--KKVSRDTAEKFNKFAPNN 402 >gi|293382367|ref|ZP_06628306.1| site-specific recombinase, phage integrase family [Enterococcus faecalis R712] gi|293389371|ref|ZP_06633829.1| site-specific recombinase, phage integrase family [Enterococcus faecalis S613] gi|312907391|ref|ZP_07766382.1| site-specific recombinase, phage integrase family [Enterococcus faecalis DAPTO 512] gi|312910009|ref|ZP_07768856.1| site-specific recombinase, phage integrase family [Enterococcus faecalis DAPTO 516] gi|291080312|gb|EFE17676.1| site-specific recombinase, phage integrase family [Enterococcus faecalis R712] gi|291081258|gb|EFE18221.1| site-specific recombinase, phage integrase family [Enterococcus faecalis S613] gi|310626419|gb|EFQ09702.1| site-specific recombinase, phage integrase family [Enterococcus faecalis DAPTO 512] gi|311289282|gb|EFQ67838.1| site-specific recombinase, phage integrase family [Enterococcus faecalis DAPTO 516] gi|315577567|gb|EFU89758.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0630] Length = 408 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 51/396 (12%), Positives = 106/396 (26%), Gaps = 71/396 (17%) Query: 11 VTKERTRHGKIIYYFRKGHGR--------RIRLPYPHESTFIPAYMSALTGSTPKREYIN 62 + + ++G+ + + +GR +I + G E++ Sbjct: 4 IKSYKLKNGQDRWEYFVSNGRSNGTGRQQKIHKRGFRSHKEALKAAKIVEGQIASEEFVK 63 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRS 121 + T+ ++ + ++ SRI + I G++ K + Sbjct: 64 -ENPQKMTISKFMNIWINEYK-NNVKEGSRIVYRDAIRMYIDPYIGNYQLNKYKPADHQK 121 Query: 122 GVESR-----------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP------ 164 + S + ++ ++ FK A + +V NP VE P Sbjct: 122 FINSLFTNKELGKNKNGLSYNTVKIVNAALSNAFKKAQKLGFVKSNPTYLVEFPLDKVKE 181 Query: 165 ---KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221 K K +E++ + + + F + GLR + + Sbjct: 182 KTNKEKKLEFYTLEQENLFLDTARNFDEYMWYVFFLIIFDLGLRKGEVMALRWFNFDFRD 241 Query: 222 FSIKTQKTGTIITVELPDGFMK----------------------------------LLAM 247 + K + +L M Sbjct: 242 NILTFDKQRLYRKERPGQVILDDVKTDAGKRSLKMTNRVRNSVLELYGINYDLTSNVLPM 301 Query: 248 TPIGKETFFINNDKQ----KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGA 302 T ++ FIN+ + + + KA + K H R +A AG Sbjct: 302 TNSNQDFLFINHRGKNVGLPIRQRSVDTAWHRIIQKANLPKIRIHDGRHTNAARLRQAGV 361 Query: 303 TAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSR 337 ++ G K V E Y A+ + Sbjct: 362 PLEDIKDMLGHKNVKTTEIYAHVSAEVKERAVNKLE 397 >gi|320093555|ref|ZP_08025446.1| recombinase XerD [Actinomyces sp. oral taxon 178 str. F0338] gi|319979482|gb|EFW10953.1| recombinase XerD [Actinomyces sp. oral taxon 178 str. F0338] Length = 249 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 38/215 (17%), Positives = 72/215 (33%), Gaps = 21/215 (9%) Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS---- 187 S + ++R L +A+RQ V + V PK+ + + + + + + Sbjct: 1 SVARASAAIRGLHAYALRQGRVGADAAAEVRAPKQGSHLPKALSVDQVSRLLDAAHSAPG 60 Query: 188 -EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE---------- 236 G + E L +G R S++ V + + + + G Sbjct: 61 AAGLRDAALLELLYATGARVSEAVGLAVDDIDLDDEAPVVRLFGKGRKERLVPLGSYAKD 120 Query: 237 ----LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVR 290 LA G F+N M+ + A+ AG+ S H +R Sbjct: 121 ALGAYLVRGRPELAARGRGSHAVFLNKRGAAMSRQSAWETIRRAASAAGLEAGVSPHTLR 180 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 AT + GA+ ++ G +V + YT+ Sbjct: 181 HSFATHLLEGGASVRDVQELLGHASVQTTQIYTRV 215 >gi|251772914|gb|EES53473.1| putative phage integrase [Leptospirillum ferrodiazotrophum] Length = 342 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 43/330 (13%), Positives = 100/330 (30%), Gaps = 24/330 (7%) Query: 16 TRHGKIIYYFR-KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 + G + + + + G ++ + + A+ + + + +++ + T L Sbjct: 5 DKRGDLQWRDQIRRKGYPVQRKTFNSRAEVEAWAAVVESEMARGIFVSRAEAEKTILDEA 64 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSS 132 + Y + S + + I + + +P + Sbjct: 65 LDRYEREVTSCQKGAVQYASLIRIWKR--TPFAARFLSSIQGSDLAKYRDEWLKSVSPKT 122 Query: 133 AIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 L + LF A++ + +NP + +PK R +M + S E Sbjct: 123 VSHELGILSRLFHTAIKDWGMGGMVNPVSQIRKPKLPKGRDRRLLPGEMDRIISAS-ESP 181 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVELPDGFMKLLAMT 248 F L +G+R S+ + + K G V L +++L+ Sbjct: 182 VLSDIIRFALETGMRRSEIAGMTWDLVDLKKRTTTLPETKNGEKRIVLLSMEAIRILSNL 241 Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--------------NKSAHGVRKFSA 294 P + + +A+A + + H +R + Sbjct: 242 PRRIDGKVWGMGPDSITHAFIRALTRARAIYEKDREEKGEKPDDSFLADLTFHDLRHEAT 301 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324 + + G ++ A G KT+ + YT Sbjct: 302 SRFFEKGLNPMQVAAITGHKTLQMLKRYTH 331 >gi|21222400|ref|NP_628179.1| integrase [Streptomyces coelicolor A3(2)] gi|15021279|emb|CAC44721.1| putative integrase [Streptomyces coelicolor A3(2)] Length = 380 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 48/378 (12%), Positives = 107/378 (28%), Gaps = 36/378 (9%) Query: 1 MTPSLRLPPFVTKERT-RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE 59 M + + R G+ + G +T + Sbjct: 1 MAGKRKSRRGFGRVRKLPSGRFQARYPGPDGVLRPADRTFATTTDADRWLMRKRIEIEEG 60 Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTKH 118 P + TT++ + + + L ++ S+ S + +I GD + + Sbjct: 61 CWLDPAEGQTTVRDWAARWLAAVSPQ-LKHKTQASYRSLINSLINPVLGDRELSSLRPIT 119 Query: 119 IRSGVESRKHTPSSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 + V + + SA + + + + AV + + PC V P+ T Sbjct: 120 VTEWVGAMRTKGLSASRIRQAYRVLSQIMRSAVDNDMIPQTPCRGVRLPRMPQTEPHILT 179 Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--- 232 + + ++ +A Y+GLR ++ + + + + Sbjct: 180 PLEASRIVKGATKPHDLLIALL--AYAGLRVGEAFALRRVDVDVSGGFVLVDENLAEANG 237 Query: 233 --ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF-----------SIWFKA---- 275 + +LL + P + + + ++ Sbjct: 238 VLVFDTPKSHQKRLLRVGPSLAKRLGRHLETLPGGDDALLFTTPGGKPLRYNQWRKAYFD 297 Query: 276 -KATKAGV-NKSAHGVRKFSATISADA-GATAHELMATYGWKTVD-QAETYTK-GADRIR 330 + AG+ + + H +R T AD G G Y + A R Sbjct: 298 PAVSAAGLTDVTPHDLRASHGTWVADRYGV--MTAAHRLGHSNASVTTRHYARPVAGRDD 355 Query: 331 LGIKNSRR-ISSVVDSDD 347 + + +S D+DD Sbjct: 356 QVAEAADSWLSGSEDNDD 373 >gi|307694467|ref|ZP_07636704.1| phage integrase, N-terminal SAM domain protein [Ruminococcaceae bacterium D16] Length = 327 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 27/257 (10%), Positives = 66/257 (25%), Gaps = 12/257 (4%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD---YRKITTKHIRSGVESRKHTPSSAI 134 + + + + + ++ + K++ SRK + + Sbjct: 56 FINAKRIEGCSEKTLSYYRQTIVSMLSGIDKEPQEIVTEDLRKYLTEYQTSRKSSKVTID 115 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194 + F W ++Y+ +P + + K +T E ++ + + Sbjct: 116 NIRRILSSYFSWLEDEDYIVKSPVRRIHKVKTAKVIKETYTDEALEIMRDNCC-NVRDLA 174 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKE 253 + L SG+R + + N V L + Sbjct: 175 MIDLLASSGMRVGEMIALNRDDINFNERECVVFGKGSKERIVYFDARTKIHLQNYLESRT 234 Query: 254 TFFINNDKQKMNAT------QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHE 306 + + + + H R+ AT + D G + Sbjct: 235 DTCSALFVSLTAPNDRLQIGGVERRLRELGKRLNLPRVHPHKFRRTLATSAIDKGMPIEQ 294 Query: 307 LMATYGWKTVDQAETYT 323 + G + +D Y Sbjct: 295 VQQLLGHQKIDTTMHYA 311 >gi|260435817|ref|ZP_05789787.1| site-specific recombinase, phage integrase family [Synechococcus sp. WH 8109] gi|260413691|gb|EEX06987.1| site-specific recombinase, phage integrase family [Synechococcus sp. WH 8109] Length = 318 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 33/277 (11%), Positives = 68/277 (24%), Gaps = 29/277 (10%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSGVESRK-- 127 LI + + + ++ + R R+I + V + Sbjct: 29 LIKRFLTQCSRSGSSE-TVRGYKREIREFTRWRDRNHPHLHLREINAAFCQDWVSQLREQ 87 Query: 128 -----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED---- 178 P + + + ++ L++WA + P R T+ Sbjct: 88 VDAGLMKPRTFNRRIAAISSLYRWASEASRSPVTGVPRNPVPTRSLLQAPKTTRGISEEA 147 Query: 179 -------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 ++Q S + + G R S+ + ++ + G Sbjct: 148 VATLLAVIRQAFSTDRNSRRDYALIKGSYLLGCRVSEIAVIRWKDIEALDDGGQIHLFGK 207 Query: 232 I------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285 + L F + + + AG + Sbjct: 208 GSKRRTVRVSAATLDLFQELGRGDAEAFVFPSPRGEGHLTRQAIGDVCRKWGRAAGFHVH 267 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 H +R AT + G L AT G + Y Sbjct: 268 PHQLRHSHATHAVQRGVDVFTLQATLGHSSSATTGHY 304 >gi|19848931|gb|AAL93615.1| integrase [Streptococcus thermophilus] gi|312278498|gb|ADQ63155.1| Integrase [Streptococcus thermophilus ND03] Length = 359 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 45/335 (13%), Positives = 105/335 (31%), Gaps = 20/335 (5%) Query: 14 ERTRHGKIIYY--FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 R R Y + G+R T A +A ++ IN + TL Sbjct: 4 YRKRPNGWEYRINYYDSTGKRKPKSKGGFRTKSEAIKAATEMELKLQDNIN--VDEDITL 61 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 ++ + +++ + ++ + +I GD + IT + + S T + Sbjct: 62 YDYFKQWCEVYKKPTVSKITYKAYINSQRKIELFFGDKKLKSITATEYQRVLNSYAKTHA 121 Query: 132 --SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + +F ++ + AV + Y+ N C + + ++++++ E Sbjct: 122 QDTVERFNVHVKACIEMAVHEGYIKRNFCKFAKINAKNKGRDIETKFLEVEEYERLIYET 181 Query: 190 SQP-----RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFM 242 S+ A + +G+R ++ V ++ + + KT T +P Sbjct: 182 SKHPEYASYTALYIIAKTGIRFAECLGLTVDDIKRDTGMLSVNKTWDYKNNTGFMPTKTK 241 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQF------SIWFKAKATKAGVNKSAHGVRKFSATI 296 + P+ E + + + + K G H +R A+ Sbjct: 242 SSIREIPLDDEFINFIDQMPPTDDGRLLPSLSNNAVNKTLRKIVGREVRVHSLRHTYASY 301 Query: 297 SADAGATAHELMATYGWKTVD-QAETYTKGADRIR 330 + G + ++ E Y + Sbjct: 302 LIAHDIDLISVSQVLGHENLNITLEVYAHQLQEQK 336 >gi|76789612|ref|YP_328698.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis A/HAR-13] gi|237803298|ref|YP_002888492.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis B/Jali20/OT] gi|237805218|ref|YP_002889372.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis B/TZ1A828/OT] gi|76168142|gb|AAX51150.1| integrase/recombinase [Chlamydia trachomatis A/HAR-13] gi|231273518|emb|CAX10435.1| integrase/recombinase [Chlamydia trachomatis B/TZ1A828/OT] gi|231274532|emb|CAX11328.1| integrase/recombinase [Chlamydia trachomatis B/Jali20/OT] Length = 300 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 33/266 (12%), Positives = 82/266 (30%), Gaps = 24/266 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMR 141 ++ S ++ ++++ +I + + K + ++ + L +++ Sbjct: 23 HGISPLSVQAYCQDVLLFLQRASIEATDRINQESVFLFVEKCHKAKESETTLARRLIALK 82 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--------SEGSQPR 193 V F + + + P + E PK + E++ S+ Sbjct: 83 VFFHFLKDAKMLDQQPFI--EHPKIWKRLPSILSTEEVNSLLDQPLNIPNLDTHIASRDA 140 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL--------- 244 +G+R S+ C + + ++ + + T + + Sbjct: 141 AILYTFYATGIRVSELCDLCIGDISDDFIRVTGKGRKTRLVPISIKAKQAIDAYLSSFRD 200 Query: 245 -LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGA 302 L +E F++ +K++ + A + S H +R AT + A Sbjct: 201 ELQKKNPSEEHVFLSIRGKKLDRSCVWKRITFYAKLVTTKRISPHSLRHAFATHLLNNHA 260 Query: 303 TAHELMATYGWKTVDQAETYTKGADR 328 + G + E YT A Sbjct: 261 DLRIIQEMLGHSRISSTEIYTHVASE 286 >gi|325677719|ref|ZP_08157370.1| site-specific recombinase, phage integrase family [Ruminococcus albus 8] gi|324110585|gb|EGC04750.1| site-specific recombinase, phage integrase family [Ruminococcus albus 8] Length = 362 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 56/356 (15%), Positives = 114/356 (32%), Gaps = 37/356 (10%) Query: 10 FVTKERTRHGKIIYYF--RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67 +T + + G+ + F +++ Y + T+ A L G Y++ Sbjct: 5 GITITKRKDGRYVGKFIADYADNGKVQYHYVYGKTYEEAESKVLIGREIATRYLSGRY-- 62 Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR 126 T++ + E+ + + ++ ++ + F I+ + GD +T I + + + Sbjct: 63 -ITVEKIYVEWLNAV-VNRVKESTLANYRNKFEKHILPEFGDVPCADLTAGKINAFINQK 120 Query: 127 KHTPSSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 SA T + + K+A + ++ V + + + E + Sbjct: 121 LADGLSASYVRDIFTVFKTMLKYAQDEYGFKLSLKSVVLPKAARKQIEKISDTEQKKLVS 180 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------- 232 S S L+ GLR + C + + + ++T Sbjct: 181 YLKSNMSLTAFGILLSLFMGLRIGELCGLKWEDVDFRNKILHIRRTVQRISSANGNRKTK 240 Query: 233 ------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280 + +PD MK M + F I+ + + +K A Sbjct: 241 IVISAPKSATSFREIAIPDMLMKYFEMFRDEADYFIISGTNKPVEPRTMQYRYKKILQSA 300 Query: 281 GV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK--GADRIRLG 332 V + + H +R AT SA+ G L A G +V Y RL Sbjct: 301 EVEDHNYHKLRHTFATNSAEKGFNVKALSAVLGHSSVTLTLNRYIHPDRTYERRLM 356 >gi|293374058|ref|ZP_06620397.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|292631019|gb|EFF49658.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] Length = 418 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 39/309 (12%), Positives = 95/309 (30%), Gaps = 18/309 (5%) Query: 45 PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESY--FDQI 102 Y +A + E + + +++ H S + + +++ +I Sbjct: 105 KEYDNAALYADTDAEQAEQLERSRSNFIEYFDHVQRTRHAHS-SDSIIVNWRRVHELLKI 163 Query: 103 IRKSGDFDYRKITTKHIRSGVESRKHTP-----------SSAIQFLTSMRVLFKWAVRQE 151 KS + ++ K + S + + P ++A + + + K A Sbjct: 164 FAKSDTILFSQMDLKLVESFRQFIMNAPQGGTKRGTISQNTASTYFSIFKAGLKQAFIDG 223 Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCR 211 Y+ I+ V+ + + T E++ + + R A F +G+R D + Sbjct: 224 YLTIDIAAKVKGIQERESRREYLTIEELNRLAQTPCDPLLKRAA-LFSALTGIRHCDIQK 282 Query: 212 AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271 ++ + T + ++ + + + + Sbjct: 283 LKWSEVEQFNGGYRLNFTQQKTKGVEYMPISEQAYNLCGEQKEGELLVFAGLPDPSWINR 342 Query: 272 WFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 K AG+ + + H R AT+ G + + G V + Y K D Sbjct: 343 PVKKWVEAAGISKHITFHCFRHSYATLQLAGGTDIYTVSKMLGHTNVRTTQVYAKVVDEK 402 Query: 330 RL-GIKNSR 337 + + + Sbjct: 403 KEKATETIK 411 >gi|149200178|ref|ZP_01877201.1| phage integrase [Lentisphaera araneosa HTCC2155] gi|149136715|gb|EDM25145.1| phage integrase [Lentisphaera araneosa HTCC2155] Length = 328 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 32/260 (12%), Positives = 84/260 (32%), Gaps = 23/260 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS--SAIQFLTSMRV 142 A +R S+ +I + + +IT + ++ T + + + Sbjct: 19 QGKAHRTRDSYLRALRRINKML-TLELDEITEEDLKKYFLKLLRTYAVPTVKSDRCGLAF 77 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202 +K+ + +E+ + + T++++ S+ + R+ + Sbjct: 78 FYKYVLSREFNWGKIIR----IQTVHKLPSVLTQKEIAHVLSYVKR-WRHRVCLTAIYSM 132 Query: 203 GLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND 260 GLR S++ + + I+ K V LPD ++++ + + Sbjct: 133 GLRVSEALKMRPSDICVERKILHIRNSKGCRDRLVPLPDLSLQMINDFWLSHRSPNYIFP 192 Query: 261 KQKMNAT-----------QFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHEL 307 + + + F+ ++G+ S H +R AT + G + Sbjct: 193 QIRDKSNMVNIDKHMYIGAVQGAFRMAVLESGIMKRVSVHNLRHSYATHMMEKGVPIMAI 252 Query: 308 MATYGWKTVDQAETYTKGAD 327 G + + Y + + Sbjct: 253 QEILGHRDIKTTMIYARLTE 272 >gi|258405086|ref|YP_003197828.1| integrase family protein [Desulfohalobium retbaense DSM 5692] gi|257797313|gb|ACV68250.1| integrase family protein [Desulfohalobium retbaense DSM 5692] Length = 371 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 42/331 (12%), Positives = 88/331 (26%), Gaps = 23/331 (6%) Query: 11 VTKERTRHGK---IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67 + ++ R+GK + R+ + R+ AL I R Sbjct: 1 MPSKKKRNGKMVGWLAQVRRQGVNKSRVCAT------REEALALEAQWKAEIKIEEERTT 54 Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESR 126 P T+ ++Y + + + D ++R G + + R IT + + ++ Sbjct: 55 P-TVLEWGNDYLDFSK-KRHSERTYEEKRYALDLLVRAVGGETEVRHITVGNALAILDDV 112 Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV-ERPKRKTEGIRPWTKEDMQQFK 183 + + A Q ++ + W R + + + + Sbjct: 113 AERRSGYVANQVRKNLLAAWNWGNRYLDKWPDMASPFGKVERYSYQKRPRVVPPMEDVQA 172 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-------NIFSIKTQKTGTIITVE 236 R L++ R + R + + + Sbjct: 173 VLEIMDETDRAMLLAYLHTAARRDEIFRLQWEDIDFANSKIALWTRKRQGGAWEADRIPM 232 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSAT 295 D LL G + + W +AGV S HG+R +A+ Sbjct: 233 TRDLREALLKERGKGNGHGLVFCREGGRKYQYRRHWIPYWCDRAGVPLFSFHGIRHLAAS 292 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGA 326 + A K+ + Y Sbjct: 293 WLDAHNVPLTTIQAVLRHKSANTTAKYLHEL 323 >gi|253689521|ref|YP_003018711.1| integrase family protein [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756099|gb|ACT14175.1| integrase family protein [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 352 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 50/334 (14%), Positives = 94/334 (28%), Gaps = 35/334 (10%) Query: 14 ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + +GK + Y RRIR + ++ + + ++ + L Sbjct: 4 RKLPNGKWLCECYPNGRDSRRIR-KTFNTKGEAESFETYTMREVEDKPWLGEKEDRRN-L 61 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--- 128 LI + + H +L+ + S I GD K+T K + R Sbjct: 62 SELIELW-NNLHGQALSAS--KSRMGKLRIICNGLGDPVASKLTAKDWAHYRDKRLRGEI 118 Query: 129 -------------TPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPW 174 P + + + +F R E+ NP + K + Sbjct: 119 DNGYHSDPKMWIAKPITVNREHQYLYAMFNELKRLGEWTLPNPLEGMRIFKEADREMSWL 178 Query: 175 TKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 T +QQ + L + L +G R S++ L + K Sbjct: 179 TTSQIQQLLDACERYGKIYLTRIVKVCLATGARWSEAEGLTRSQLSPYKLTFFKTKGKKN 238 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKF 292 TV +P L+ + + + T + ++ H +R Sbjct: 239 RTVPIPRWLHDELSELQGKMFQPCYQDFVKMLALTNIELI---------EGQNTHVLRHT 289 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA 326 A+ G L G + + Y A Sbjct: 290 FASHFMMNGGNILVLQRILGHANIRETMRYAHFA 323 >gi|182418902|ref|ZP_02950159.1| site-specific recombinase, phage integrase family [Clostridium butyricum 5521] gi|237667033|ref|ZP_04527017.1| site-specific recombinase, phage integrase family [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377185|gb|EDT74753.1| site-specific recombinase, phage integrase family [Clostridium butyricum 5521] gi|237655381|gb|EEP52937.1| site-specific recombinase, phage integrase family [Clostridium butyricum E4 str. BoNT E BL5262] Length = 364 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 42/359 (11%), Positives = 101/359 (28%), Gaps = 35/359 (9%) Query: 12 TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK----- 66 +++ + + I ++ G+ + A A + + + ++ Sbjct: 9 YRQKDKGWQFIISYKDETGKWRQKSKQGFKNKKDAKPVAEKTMLELKASLKNSKQILSNN 68 Query: 67 -KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE- 124 T K L + + + S+ D I ++ + Sbjct: 69 YSNITFKELSDAFLDHKKLY-IKACTYTSYSQNLKVFKD-LNDKKIIDIKKVDVQKVFDV 126 Query: 125 --SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 +K ++ + ++ +LFK+ ++++ PK+ + TK ++ Sbjct: 127 LLEKKSKYNTLKDYRGTLNLLFKFYKENYDPNYENNINIKLPKKDATLKKALTKSELDNV 186 Query: 183 KSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHL-----------------QNNI 221 SF+ G + GLR S+ + Sbjct: 187 LSFFKLKPPTGQWQYITCLIAGTCGLRFSEIMGLKWNDIDSVNLTLTVERQYRQNLNGEW 246 Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 I + + + LP + L + T N K T + ++ A Sbjct: 247 EFITPKSKNSTRIIPLPKSTYEELKKYRTEQPTDINNRIVTKNPRTAQYLLNRSLNKIAN 306 Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKNSRRI 339 + S H +R T+ + G + Y+ D +++ +I Sbjct: 307 I--SLHELRHTYITLLVANNVDFKTVAQFAGHDVEQTLKVYSHVNDDMLKIASNKIAKI 363 >gi|110834925|ref|YP_693784.1| shufflon-specific DNA recombinase [Alcanivorax borkumensis SK2] gi|110648036|emb|CAL17512.1| rci [Alcanivorax borkumensis SK2] Length = 367 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 48/364 (13%), Positives = 102/364 (28%), Gaps = 38/364 (10%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 +T G RK + + YI + T+ Sbjct: 6 KTPSGTWKAVIRKTGFPTTS-KTFRTKRDAEDWSRRTEDEMVRGVYIQRAPAERMTVADA 64 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-------- 126 + Y S + +I+ G + ++ + I + R Sbjct: 65 LKRYLAEVSPTK-RPASAACDVRHSKPLIKGLGKYSLAALSPEIIAKYRDERLAGLDRKD 123 Query: 127 --------KHTPSSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTK 176 +P++ L + +F A+R+ + NP ++ RP R + Sbjct: 124 AKGNPDPRPRSPNTVRLDLALLGHMFTTAIREWGIGLPSNPVQNIRRPAPPPGRERRLNQ 183 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTI 232 + + + S P L + L +G+R ++ + ++ K Sbjct: 184 TEEDRLIAAVDSHSNPMLGWIVRLALETGMRSAEITTLRRNQIDLKRRVVRLLETKNTAP 243 Query: 233 ITVELPDGFMKLLA--------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN- 283 TV L +L F + F+ + AG+ Sbjct: 244 RTVPLSSTATAILQEALANPVRPIDTDLVFFGEPGRDGQRRPYNFNKPWLKAKETAGMKE 303 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343 H +R + + + G + ++ A G K++ + YT + S+ Sbjct: 304 LHFHDLRHEAVSRLVEGGLSDQQVAAISGHKSMQMLKRYTHL-----RAEDLVNELDSIA 358 Query: 344 DSDD 347 D + Sbjct: 359 DRRN 362 >gi|86140615|ref|ZP_01059174.1| tyrosine type site-specific recombinase [Leeuwenhoekiella blandensis MED217] gi|85832557|gb|EAQ51006.1| tyrosine type site-specific recombinase [Leeuwenhoekiella blandensis MED217] Length = 422 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 43/304 (14%), Positives = 99/304 (32%), Gaps = 30/304 (9%) Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI-----TTKHIR 120 K TL LI Y G+LA + +F+ + +++ I K I Sbjct: 105 KSTKTLVQLID-YHSEKIKGTLAKGTIRNFQITENYVLKFLKSNKLEDIFLSRLDYKFIC 163 Query: 121 SGV----------ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170 R + ++ ++ + +R + + A E++ +P + + Sbjct: 164 DFESFLVQYYPKGHPRAMSHNTVMKHIQRLRKMIRLAYHLEWLDKDPFRRWKT-TFEKTD 222 Query: 171 IRPWTKEDMQQ---FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227 ++ ++ ++ + R F F Y+G+ +D + ++ K Sbjct: 223 REFLSEHELSNLATYEFPLERLERVRDLFLFSCYTGISYADLNKLTPNNIWKGEDDKKWI 282 Query: 228 KTGT-----IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 T + V L ++L+ T + + +++ K A G+ Sbjct: 283 VTNRQKTNTRVKVPLMPTALRLIEKYREHPLTEVSGTLFPPITNERANLYLKEIAEACGL 342 Query: 283 NK--SAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 K + H R AT G + G + + Y + D+ ++ ++ Sbjct: 343 TKNLTFHMARHTFATTVTLSNGMPIETVSKLLGHTKIATTQIYARVLDKK--VEEDMNKL 400 Query: 340 SSVV 343 V+ Sbjct: 401 QEVL 404 >gi|322381501|ref|ZP_08055481.1| site-specific tyrosine recombinase XerC-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154543|gb|EFX46839.1| site-specific tyrosine recombinase XerC-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 314 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 42/276 (15%), Positives = 86/276 (31%), Gaps = 23/276 (8%) Query: 72 KWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGD---------FDYRKITTKHIRS 121 K ++ ++ S L + + S I F + T + Sbjct: 25 KQIVQDFIHSLTIHEDLNPKTLKEYASDLKHFIGWFETANYQEENIVFRIEDVATPTLTR 84 Query: 122 GVES----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 E+ + P++ + L +++ F+WA + +P V+ + R T + Sbjct: 85 YQEASQKVMELKPATINRRLITLKRFFEWAASNSIIRRDPSKPVKLVPEEKVSPRQMTDK 144 Query: 178 DMQQFKSFWSEG--SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 + + G + + +L++GLR + C +Q ++++ K V Sbjct: 145 EEDALIAAAEHGGSLRDQTILIVMLHTGLRTMEVCDLAPGDIQIGKLTVRSGKRNKQREV 204 Query: 236 ELPDGFMKLLAMTPIG-----KETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGV 289 L L + F +++ + KA + SAH + Sbjct: 205 PLNATCRSALEKYLVYLPPGSPYLFPSEKTGDRLSERALRHLIQKYMKKARLKGLSAHDL 264 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 R + A H L G + D Y K Sbjct: 265 RHRFGYVMAVN-TPLHRLAQIMGHDSPDTMMIYVKA 299 >gi|251772812|gb|EES53373.1| phage integrase family protein [Leptospirillum ferrodiazotrophum] Length = 351 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 48/324 (14%), Positives = 100/324 (30%), Gaps = 19/324 (5%) Query: 14 ERTRHGKIIYYFR-KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 +R ++ + + G +++ + + + S + + ++ + TTLK Sbjct: 6 KRNLSDSTVWEVKIRRKGYPVQMRSFDKREDGEKWAREIESSMDRGVFKSTKEGEKTTLK 65 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HT 129 + Y + R I K I RK + Sbjct: 66 EALDRYLE--EVSKHKKGHRRERSRIEKWKAHSLSSRYLASIGPKDIADYASERKSEGFS 123 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVA-------INPCLSVERPKRKTEGIRPWTKEDMQQF 182 + L + L+ +A + + + + + R T ++ Sbjct: 124 MRTIHLELAIISHLYNYAAAKWGMRALENPVAPTRVKGTDPHRGQNYRGRERTLSLSEKE 183 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--IITVELPDG 240 K F + + L +G+R + + ++ +K +T V L Sbjct: 184 KLFEHLNEEMKQIVTLALETGMRRGELISLTISNVDLTKKIVKLDETKNGDSREVPLSPA 243 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISAD 299 + L K+ + M + + F A +AG+ + H +R +AT Sbjct: 244 AVDTLKAVLGNKKIVGFDGKLWTMGPDRVTSVFANAAKEAGLKDIRFHDLRHTAATKL-- 301 Query: 300 AGA-TAHELMATYGWKTVDQAETY 322 AG AHEL G K ++ Y Sbjct: 302 AGIYQAHELAKILGHKVLNMVMRY 325 >gi|312887835|ref|ZP_07747422.1| integrase family protein [Mucilaginibacter paludis DSM 18603] gi|311299654|gb|EFQ76736.1| integrase family protein [Mucilaginibacter paludis DSM 18603] Length = 410 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 39/325 (12%), Positives = 100/325 (30%), Gaps = 31/325 (9%) Query: 48 MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF---ESYFDQIIR 104 + + ++ + +L LI+ Y L ++ + + Y + + Sbjct: 87 KRKMLSAKAIKDLYLGEEAEVYSLSRLIT-YHNETSTTDLKWSTLRHYYVTQRYLVKFLE 145 Query: 105 ---KSGDFDYRKITTKHI-------RSGVESRKHTPSSAI---QFLTSMRVLFKWAVRQE 151 + D ++ K + R+ P + + + ++ + A+ + Sbjct: 146 DQHHASDIYLHQLDFKFVKDFEVYLRNHKPKDHQKPLNNNGVMKHIIRLKKMVNLALNLQ 205 Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSD 208 ++ +P + + K +++++ + + R F F Y+GL D Sbjct: 206 WITNDPFATYK-LKILKVNREQLSEKELADMEKKKLSIERLDMVRDMFVFCCYTGLSYVD 264 Query: 209 SCRAGVQHLQNNIFSIKTQKTGTI-----ITVELPDGFMKLLAMTPIGKETFFINNDKQK 263 H+ + +T + V L + +L + Sbjct: 265 MINLTPGHIIAGSDGERWIRTCREKTLIPVNVPLLPQALTILDKYKDNIRSLSNGRVFPT 324 Query: 264 MNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAE 320 ++ + + + K A G+ K + H R AT G + G + + Sbjct: 325 VSNQKVNSYLKEIADLCGITKNVTFHIARHTFATTVTLSNGVPIETVSKILGHTKITTTQ 384 Query: 321 TYTKGADRIRLGIKNSRRISSVVDS 345 Y K +R ++ + + S Sbjct: 385 IYAKVVERK--LKEDMNALKLRIGS 407 >gi|315033819|gb|EFT45751.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0017] Length = 408 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 52/396 (13%), Positives = 106/396 (26%), Gaps = 71/396 (17%) Query: 11 VTKERTRHGKIIYYFRKGHGR--------RIRLPYPHESTFIPAYMSALTGSTPKREYIN 62 + + ++G+ + + +GR +I + G E++ Sbjct: 4 IKSYKLKNGQERWEYFVSNGRSNGTGRQQKIHKRGFRTHKEALKAAKIIEGQIASEEFVK 63 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRS 121 + T+ ++ + ++ SRI + I G++ K + Sbjct: 64 -ENPQKMTISKFMNIWINEYK-NNVKEGSRIVYRDAIRMYIDPYIGNYQLNKYKPADHQK 121 Query: 122 GVESR-----------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP------ 164 + S + ++ ++ FK A + YV NP VE P Sbjct: 122 FINSLFTNKELGKNKNGLSYNTVKIVNAALSNAFKKAQKLGYVKSNPTYLVEFPLDKVKE 181 Query: 165 ---KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221 K K +E++ + + + F + GLR + + Sbjct: 182 KTNKEKKLEFYTLEQENLFLDTARNFDEYMWYVFFLIIFDLGLRKGEVMALRWFNFDFRD 241 Query: 222 FSIKTQKTGTIITVELPDGFMK----------------------------------LLAM 247 + K + +L M Sbjct: 242 NILTFDKQRLYRKERPGQVILDDVKTDAGKRSLKMTNRVRNSVLELYSINYDLTSNVLPM 301 Query: 248 TPIGKETFFINNDKQ----KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGA 302 T ++ FIN+ + + + KA + K H R +A AG Sbjct: 302 TNSNQDFLFINHRGKNVGLPIRQRSVDTAWHRIIQKANLPKIRIHDGRHTNAARLRQAGV 361 Query: 303 TAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSR 337 ++ G K V E Y A+ + Sbjct: 362 PLEDIKDMLGHKNVKTTEIYAHVSAEVKERAVNKLE 397 >gi|257078096|ref|ZP_05572457.1| conserved hypothetical protein [Enterococcus faecalis JH1] gi|256986126|gb|EEU73428.1| conserved hypothetical protein [Enterococcus faecalis JH1] Length = 376 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 47/355 (13%), Positives = 111/355 (31%), Gaps = 41/355 (11%) Query: 14 ERTRHG-KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 ++ + G + ++ GR ST A ++A + + + Sbjct: 5 KKLKSGWQFRVSYKDKDGRYKTKSVNGFSTKKEAQLAASEIEARYSKGYSLKEGEKL-FH 63 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132 + + G L+ ++ D + +++T + + + T ++ Sbjct: 64 EYFRNWFEVYRKGKLSQDNDGDIRRAVDFSEKYFPGTKLKELTRQEYQKALNDYGETHAT 123 Query: 133 A--IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW-------TKEDMQQFK 183 A + T MR K A+ + + +P V+ +K + + + Sbjct: 124 ASVKKHHTYMRAALKDALEEGIIHRDPTYRVQAIGKKNPKHEELKYLNYQESIHLVHKIL 183 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG------------- 230 R F + +G R S+ + ++K KT Sbjct: 184 EGIKPTYTSRFIILFGIATGCRFSEIIGMTWDCIDFKNKTVKVNKTWDYKYTNTFSNTKN 243 Query: 231 --TIITVELPDGFMKLLAMTPIGKETFFI-------------NNDKQKMNATQFSIWFKA 275 + + + D + LL + ++ +++ N++ + ++ T + + Sbjct: 244 YQSKRIITIDDDTLDLLKKLQLHQKEYYLKSGLRNENNLVFLNDNMELVSNTAVNKVLRK 303 Query: 276 KATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADR 328 K G + HG+R A+I G + G K + +TY D Sbjct: 304 FCRKIGTKELTCHGLRHTHASIMLYKGINIKYVSRRLGHKDIVTTLQTYQHILDE 358 >gi|255100620|ref|ZP_05329597.1| integrase/recombinase [Clostridium difficile QCD-63q42] Length = 346 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 39/307 (12%), Positives = 82/307 (26%), Gaps = 45/307 (14%) Query: 82 AHWGSLAVNSRISFESYFDQIIRKSGDFD---YRKITTKHIRSG---------VESRKHT 129 + N+ S+ + + +IT + I R + Sbjct: 20 PDEQKCSPNTIRSYRKSLELLFDFIKTKRNISLSEITFEMIDRNAVSEFLDYLETERNCS 79 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ-------QF 182 S+ L +R +K+A +++ I+ +++ K+ E Q Sbjct: 80 ISTRNHRLHCIRAFYKYAAQEDITVISHLEEIQKVKKAKEPETIVEHMSEDAVNAILKQP 139 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDG 240 +F +G + FL +G R + + +Q T ++ L D Sbjct: 140 DTFTEKGKRDAFLLLFLYKTGARVQELVDIRLCDIQLGRHPKVTIHGKGAKTRSIPLRDD 199 Query: 241 FMKLLAMT------------PIGKETFFINNDKQKMNATQFSIWFKAK-------ATKAG 281 ++ L + K++M + + Sbjct: 200 VVQHLKQYLALFHPEEHLFSEQHLFYVTRSRMKKRMTEDNVRQLVRKYGKQAREICKEVP 259 Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 N H R A I G + G ++ Y ++ + + Sbjct: 260 ENVHPHLFRHSWAMILYQNGVDLTLISQWLGHSNLETTLIYAHADTELKR-----KALEQ 314 Query: 342 VVDSDDP 348 V D P Sbjct: 315 AVPDDSP 321 >gi|28199031|ref|NP_779345.1| phage-related integrase [Xylella fastidiosa Temecula1] gi|182681754|ref|YP_001829914.1| integrase family protein [Xylella fastidiosa M23] gi|28057129|gb|AAO28994.1| phage-related integrase [Xylella fastidiosa Temecula1] gi|182631864|gb|ACB92640.1| integrase family protein [Xylella fastidiosa M23] gi|307580183|gb|ADN64152.1| integrase family protein [Xylella fastidiosa subsp. fastidiosa GB514] Length = 339 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 55/329 (16%), Positives = 102/329 (31%), Gaps = 23/329 (6%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 P + G + YY+ G R P + + L + Sbjct: 12 PRFRVRPQKSGVVYYYYDHGGKPRKETPLGRDYGLAIKRWAELEHAQITPAI-------A 64 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR 126 T + + YR A N++ Y + +++ D + I +IR ++ R Sbjct: 65 VTFRHVAERYRAEVIPTK-AYNTQRMHHVYLNYLLQFFDDPPAPFESIKPVNIRQYLDWR 123 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 SA + + L+ W + + +R E R +D + Sbjct: 124 PFK-VSANREVALFSHLWNW--ARSKGITDLPNPCGGIRRNKERGRDVYIDDTTYRAVYQ 180 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246 + R A + +G R SD +H+ N I KTG + + + L+ Sbjct: 181 AADQTLRDAMDLAYLTGQRVSDVVSMDERHIVNGALEICQAKTGVKLAIAITGELAVLIK 240 Query: 247 MTPIGKETFFINNDKQKMNATQFS-------IWFKAKATKAGVNK---SAHGVRKFSATI 296 K + + + ++ F+ AG+ K +R +AT Sbjct: 241 RIFDRKRGMKLRSTRLIVDEKGLGLNWKKLAYRFRKVRAAAGIAKEVFQFRDLRAKAATD 300 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKG 325 AD + A G +V E Y + Sbjct: 301 KADLAGDIRQAQAQLGHTSVVMTEHYVRK 329 >gi|145225223|ref|YP_001135901.1| phage integrase family protein [Mycobacterium gilvum PYR-GCK] gi|315445672|ref|YP_004078551.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1] gi|315445685|ref|YP_004078564.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1] gi|315445693|ref|YP_004078572.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1] gi|315446113|ref|YP_004078992.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1] gi|145217709|gb|ABP47113.1| phage integrase family protein [Mycobacterium gilvum PYR-GCK] gi|315263975|gb|ADU00717.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1] gi|315263988|gb|ADU00730.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1] gi|315263996|gb|ADU00738.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1] gi|315264416|gb|ADU01158.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1] Length = 360 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 43/314 (13%), Positives = 81/314 (25%), Gaps = 60/314 (19%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHTP 130 L++EY + + + + ++ R G D +TT+ + + + TP Sbjct: 28 ALVNEYLRYLADRNYSPRTLRAYGYDLLAFCRWLGSVDVELSSVTTETVLDFMRHCRQTP 87 Query: 131 ---------------------SSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKT 168 ++ L ++ LF + R + E + Sbjct: 88 IAGRPTNVVSMTGTRLDRYSSTTINHRLAALTGLFTFRELRDPGLRTPIPSGREARRVSA 147 Query: 169 EGIRPWTKEDMQQFKSFWS------------------------EGSQPRLAFEFLLYSGL 204 E ++ + + R +L SGL Sbjct: 148 EERNGLLGHLVRPKRRSALRLREPRRLPRALNRRETAELLSSLRTWRDRALAGLMLLSGL 207 Query: 205 RCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLAMT----------PIGKE 253 R + V + + K V L L+ Sbjct: 208 RSGELLTLDVTDVDIGARWVKVMGKGAKERRVPLDVEVAGLIQTYLLVERPESDSNRLFL 267 Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSATISADAGATAHELMATYG 312 + Q + A F+ K+G + H +R T A+AG + A G Sbjct: 268 VAKGPHRGQPLTAAGLRTIFRYHRIKSGVLAGHPHALRHTFGTAMAEAGVDLAVMQALLG 327 Query: 313 WKTVDQAETYTKGA 326 +D Y A Sbjct: 328 HAHIDTTARYIHLA 341 >gi|168261001|ref|ZP_02682974.1| site-specific recombinase, phage integrase family [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168465660|ref|ZP_02699542.1| site-specific recombinase, phage integrase family [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195631733|gb|EDX50253.1| site-specific recombinase, phage integrase family [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|205349738|gb|EDZ36369.1| site-specific recombinase, phage integrase family [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 387 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 51/380 (13%), Positives = 113/380 (29%), Gaps = 59/380 (15%) Query: 17 RHGK-IIYYFRKGHGRRIRLP-YPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 R G+ + G+RI+ + + + + T Sbjct: 5 RRGEIWYASYSTPGGKRIKESLGTSDKRLATELHDKRKAELWRVDRLGDF--PDVTFDDA 62 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---- 130 + + S S + + +T + I V + Sbjct: 63 CMRWLEEKAEKK----SLKDDRSRMAFWLAHFEGVRLKDVTEQKIYLAVNKMSNRKQLEI 118 Query: 131 -------------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165 S+ + L M+ + + A +++ + ++ P Sbjct: 119 WKIKAAAAQKNGEPAPIYSAKPVTTSTKAKHLALMKAILR-AAERDWKWLEKAPVIKVPA 177 Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----I 221 + + +R KE+ ++ E + +F L +GLR S+ Q + Sbjct: 178 VRNKRVRWLEKEEAKRLIDECPEPLKS--VVKFALATGLRRSNIINMEWQQIDMQRRVAW 235 Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------------F 269 + + K+ I V L D K+L + + K+ + Sbjct: 236 VNPEDSKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKEGIRPDGSKTPTIRKMRVDD 295 Query: 270 SIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 + A +AG+ + H +R A+ +G L GW++++ Y A Sbjct: 296 QRAWNAACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPN 355 Query: 329 IRLGIKNSRRISSVVDSDDP 348 +++++I S+ D P Sbjct: 356 H--LTEHAKQIDSIFSDDVP 373 >gi|326538700|gb|ADZ86915.1| phage-related integrase [Brucella melitensis M5-90] Length = 303 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 49/276 (17%), Positives = 97/276 (35%), Gaps = 14/276 (5%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVES 125 + +I+ Y+ S + LA +++ ++ + D+I +K GD + IR Sbjct: 19 FRAVITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSIAQFDLPQKIRPVIRKWRGE 78 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 P +A + + + +AV ++ NPC +++ + WT +D+ + K+ Sbjct: 79 FADKPRTADYGMQVLSRVLSYAVDPLGKISQNPCEGIKQLYKNDRAAIIWTDQDIARLKT 138 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFM 242 + A + ++GLR D R H+ +N + + + L Sbjct: 139 KC--SPEVAWAVDLAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRHTKEAVIPLYAELR 196 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISAD 299 LL P N K F F +A + + H R +AT Sbjct: 197 ALLQTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLHFHDFRGTAATKFYI 256 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 AG + + GW+ + + I+ Sbjct: 257 AGLSERVIAEIMGWE-EETVRNIIRRYVSKTAAIEA 291 >gi|299821501|ref|ZP_07053389.1| integrase/recombinase [Listeria grayi DSM 20601] gi|299817166|gb|EFI84402.1| integrase/recombinase [Listeria grayi DSM 20601] Length = 314 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 37/267 (13%), Positives = 93/267 (34%), Gaps = 18/267 (6%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRS--GVESRK 127 LI ++ +S ++ + + F+ + ++ D +++ + + + Sbjct: 26 LIEDFIRSRRLKNVRETTIKYYLDIFNVLNRDKVKVDLDKPLSELSQRDLEDIVMYWKKS 85 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED-----MQQF 182 +S + + + + + ++Y+ +NP +++ E + + Sbjct: 86 LKVTSINSKIKAFKAFYNYLFSKKYIKVNPVADFSLLRQREEIRKTLEANEIKKIANYYK 145 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242 + + + F+ LL +GLR S++ V + ++ + K T V + Sbjct: 146 RKETFTAFRDLVLFQLLLDTGLRISEAINIKVPDIHDDYIVVVETKNLTQRIVYISKSMK 205 Query: 243 KLLAMTP-----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSAT 295 + L + FI D K F + + K S H R+ A Sbjct: 206 QKLNSYISIRGECNHQYLFIIQDGTKYTKYSFQESLRNAGRMCQLRKQVSPHVCRRTYAK 265 Query: 296 ISADAGATAHELMATYGWKTVDQAETY 322 + +G A L + G +++ + Y Sbjct: 266 NAILSGMDAFSLASLLGHSSLEVTKRY 292 >gi|255305195|ref|ZP_05349367.1| phage integrase family protein [Clostridium difficile ATCC 43255] Length = 351 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 51/360 (14%), Positives = 110/360 (30%), Gaps = 34/360 (9%) Query: 5 LRLPPFVTKERTRHGKII--YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62 ++P + K+ R +YF +G + + T A + Sbjct: 2 SKIPAY--KDEQRK-SWYAGFYFTDFNGDKKKKIKRGFKTKKEAL------EFEREFLNK 52 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRS 121 S + L+ EY + L + + + + +I+ +IT KHIR Sbjct: 53 SKMSTDMNFESLVDEYMQDMSTR-LKLTTIDIKKYLINLKILPFFRKLKINEITAKHIRK 111 Query: 122 GVESRKHTPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + S T + + +AV+ + NP +K + D Sbjct: 112 WQNELLQSDYSQTYIKTINNQLVAILNYAVKYYNLPSNPAHLAGSIGKKNADEMQFWTLD 171 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-------- 230 + + +PRLAFE L ++GLR + + + N +I Sbjct: 172 EFKKFMEFENKPEPRLAFEILFWAGLRLGELMALTPKDIFENKINIDKSYMKLNGEDIVS 231 Query: 231 ------TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284 + V +P + + K + +G+ + Sbjct: 232 SPKTPKSKRIVPIPSFLYNNIKDYLSKLYDLKEDERIFKFAKSYLHKELDRCCKLSGIKR 291 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSV 342 H +R A++ + + G + + TY+ +L + ++++ + Sbjct: 292 IRVHDLRHSHASLLVNMDVNILTIAERLGHEKAETTWNTYSHLYPNKQL--EVAQKLDDL 349 >gi|221232324|ref|YP_002511477.1| phage integrase [Streptococcus pneumoniae ATCC 700669] gi|8953580|emb|CAB96616.1| integrase [Streptococcus phage MM1] gi|73747016|gb|AAZ82412.1| integrase [Streptococcus phage MM1 1998] gi|220674785|emb|CAR69358.1| phage integrase [Streptococcus pneumoniae ATCC 700669] Length = 375 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 42/373 (11%), Positives = 117/373 (31%), Gaps = 52/373 (13%) Query: 18 HGKIIYYFRKGH---GRRIRLPYPHESTFIPAY-MSALTGSTPKREYINSPRKKPTTLKW 73 +GK ++ R + ++ E A +A+ + +++ + + T + Sbjct: 8 NGKYKFFERYKDPYTEKLKKVSVTMEKKTPQARNQAAILLQEKINKKLSTKQVESITFEE 67 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESRKHTPS- 131 + + + KS ++ +++ + +S ++ D + + ++ +E + Sbjct: 68 IYNLFYKSW-AQTVKESTKHNCKSVDKKMKEVIPSDTILANLDRRFLQEAIEKIIESNGY 126 Query: 132 -SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ--QFKSFWSE 188 +A + +R +F +AV+ Y+ N P++ K + + Sbjct: 127 ITAKKVRHRLRGIFNYAVQYSYIENNEVDYTTIPQKPKTLEELEKKRNNFLTMQEIKALV 186 Query: 189 GSQPRLAFEFLL--------YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------- 232 R + +G+R + ++++ I+ Sbjct: 187 DVLNRREYHQKYADMVLVLTLTGMRYGELTALQLKNIDFENNKIEITGNFDSVNKIKTLP 246 Query: 233 ------ITVELPDGFMKLLAMTPIG-----------KETFFINNDKQKMNATQFSIWFKA 275 T+++ + ++ + + F Q F K Sbjct: 247 KTTNSIRTIKVSESVIEAIQRQIVRLSERFQPLSSDDYIFCFEKWNQPTTIACFIQILKK 306 Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLG 332 +A + K S+H R + A++G +M G E Y+ + Sbjct: 307 YGKQAKIEKNLSSHIFRHSHISFLAESGLPIKSIMDRVGHSNAKMTLEIYSHTTE----- 361 Query: 333 IKNSRRISSVVDS 345 ++ + +D+ Sbjct: 362 -DMEDKLVNKLDT 373 >gi|327537283|gb|EGF24020.1| phage integrase family protein [Rhodopirellula baltica WH47] Length = 286 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 36/287 (12%), Positives = 75/287 (26%), Gaps = 29/287 (10%) Query: 82 AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFL 137 H A + + Q+ +G ++T +H+R R S Sbjct: 1 MHLTGKAKRTHDGYIRAVRQLSDFAGCSP-EQVTEQHVRQFFLHLKNDRNFAYGSLRVAF 59 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-SFWSEGSQPRLAF 196 + ++ F ++++ I + T T E + + S ++ Sbjct: 60 SGIKFFFTHTCKRDWEIIKMLK----LQNITTLPEVLTIEQVHELIGSATTQRMFVYFWT 115 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF 256 + L L + + + + K V LP ++LL Sbjct: 116 VYSLGLRLNEALHLQVSDIDAERGWVHVHRGKGAKDRYVPLPTTTVRLLRNYWASHRHPC 175 Query: 257 INND----------------KQKMNATQFSIWFKAKATKA--GVNKSAHGVRKFSATISA 298 + M+ T K G S H +R AT Sbjct: 176 LLFPADGRKHDLAKDGVSQATTPMSETAVQGAMKQITKNLRFGKKVSIHTLRHSYATHLL 235 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRL-GIKNSRRISSVVD 344 ++G + G ++ Y D + ++ + Sbjct: 236 ESGVGLKVIQRYLGHSSLQTTLVYLHLTDTAEANAREEIEKLFGRLP 282 >gi|256845727|ref|ZP_05551185.1| DNA integration/recombination/invertion protein [Fusobacterium sp. 3_1_36A2] gi|256719286|gb|EEU32841.1| DNA integration/recombination/invertion protein [Fusobacterium sp. 3_1_36A2] Length = 405 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 62/390 (15%), Positives = 116/390 (29%), Gaps = 72/390 (18%) Query: 10 FVTKERTRHGKIIY----YFRKGHGRRIRLPYPHESTFIPAYM-----------SALTGS 54 + T + GK + Y +K R+ L +S L Sbjct: 2 YTTSYTRKKGKYYHVVFEYVKKKGTRKKSLSRTTKSEDKEVADSMLDDFVTECMRILNID 61 Query: 55 TPKREYINSPR---------KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIR 104 + + K + I Y K ++ ++ +ES +I Sbjct: 62 KKYKPKNRNEIIFNKDINLYNKEISFCDFIYGYIK-MRRKTIEDDTYSGYESIARCSLIP 120 Query: 105 KS--GDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158 + ++I I R +P++ + + + ++FK+A+R + ++INP Sbjct: 121 YFYRENKKLKEIEDFDIEKYYYHELNYRNISPNTVLHYHYLLSLVFKYALRHKIISINPL 180 Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSF-WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217 SVE+PK+K + E++ E Y GLR S+ + Sbjct: 181 DSVEKPKKKKYVAEVYNAEEINILLDLLKREEESIYFGVLMAAYFGLRRSEVIGLKWSSI 240 Query: 218 QNNIFSIKTQKTGTI---------------------ITVELPDGFMKLL----------- 245 +I T + LP +LL Sbjct: 241 NFEENTITIMSTVKETNIDGKHILVCQDKTKSPAGLRSFSLPIEIKELLLKIKEKQEENK 300 Query: 246 -----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299 KE ++++ +++ + F K + H +R ATI D Sbjct: 301 KYLGKCYYMEDKEYIYVDDGGKRLRPNYLTTRFGKFLKKFNLKHIRFHDLRHSCATILYD 360 Query: 300 AGATAHELMATYGWKTVDQAE-TYTKGADR 328 A E+ G +V Y +R Sbjct: 361 NNAGIKEIQTYLGHSSVKTTMEIYVHLMNR 390 >gi|71898993|ref|ZP_00681159.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Ann-1] gi|71731239|gb|EAO33304.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Ann-1] Length = 339 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 55/329 (16%), Positives = 102/329 (31%), Gaps = 23/329 (6%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 P + G + YY+ G R P + + L + Sbjct: 12 PRFRVRPQKSGVVYYYYDHGGKPRKETPLGRDYGLAIKRWAELEHAQITPAI-------A 64 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR 126 T + + YR A N++ Y + +++ D + I +IR ++ R Sbjct: 65 VTFRHVAERYRAEVIPTK-AYNTQRMHHVYLNYLLQFFDDPPAPFESIKPVNIRQYLDWR 123 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 SA + + L+ W + + +R E R +D + Sbjct: 124 PFK-VSANREVALFSHLWNW--ARSKGITDLPNPCGGIRRNKERGRDVYIDDTTYRAVYQ 180 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246 + R A + +G R SD +H+ N I KTG + + + L+ Sbjct: 181 AADQTLRDAMDLAYLTGQRVSDVVSMDERHIVNGALEICQAKTGVKLAIAITGELSVLIK 240 Query: 247 MTPIGKETFFINNDKQKMNATQFS-------IWFKAKATKAGVNK---SAHGVRKFSATI 296 K + + + ++ F+ AG+ K +R +AT Sbjct: 241 RIFDRKRGMKLRSTRLIVDEKGLGLNWKKLAYRFRKVRAAAGIAKEVFQFRDLRAKAATD 300 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKG 325 AD + A G +V E Y + Sbjct: 301 KADLAGDMRQAQAQLGHASVTMTEHYVRK 329 >gi|332161996|ref|YP_004298573.1| Integrase family protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325666226|gb|ADZ42870.1| Integrase family protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 314 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 42/292 (14%), Positives = 82/292 (28%), Gaps = 31/292 (10%) Query: 54 STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113 + + ++ L LI + K +++ + S + + I + G+ Sbjct: 2 EQARHKPWLGEKEDRRKLLELIDLWYK---LHGCSLSDKKSRLAKLEIICKGLGNPIAAD 58 Query: 114 ITTKHIRSGVESR----------------KHTPSSAIQFLTSMRVLFKWAVRQ-EYVAIN 156 IT K + R T + +R +F R E+ N Sbjct: 59 ITPKDWAHYRDQRLRGEINNGYSTSLRTRMVTTGTVNSEQAYLRAVFNELTRLGEWSLPN 118 Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGV 214 P +++ + + + + P L L +G R ++ + Sbjct: 119 PLMNIREFDQPEREMAWLNDDQIDSLLDASDLHGNPELTLIVRLCLSTGARWNEIAKIKA 178 Query: 215 QHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274 + N + K TV L + + LA QF + Sbjct: 179 SQISPNKITFINTKGKKNRTVPLSEEMYQALAAHKGKAFAPC---------YKQFYRVIR 229 Query: 275 AKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 + V + H +R A+ AG L G + Y+ A Sbjct: 230 LAQIELPVGQMTHVLRHTFASHFMMAGGNIIVLQRILGHSDIRVTMRYSHFA 281 >gi|166032543|ref|ZP_02235372.1| hypothetical protein DORFOR_02258 [Dorea formicigenerans ATCC 27755] gi|166026900|gb|EDR45657.1| hypothetical protein DORFOR_02258 [Dorea formicigenerans ATCC 27755] Length = 400 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 54/371 (14%), Positives = 108/371 (29%), Gaps = 68/371 (18%) Query: 19 GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78 G+ I F G+R L + A+ + E+ + + TL + Sbjct: 20 GRYIARFTSKTGKRKTLYDFKLNELKRKLREAVY----EDEHGLNGNGESITLNAWYVTW 75 Query: 79 RKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAI 134 + ++ + + SY++ ++ G + I T H++ + + + Sbjct: 76 TELYKKKTVKMTTIYKNHSYYNSRVKNSIGKMYLQDIKTYHVQKFLNDLIDSGLAHGTVS 135 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194 + +F AV EY+ NPC+ VE PK + R T+E+ ++F +F S + Sbjct: 136 NIRFMLSDMFDKAVLSEYIRKNPCIGVEMPKEVKKERRVLTREEQEKFFTFASSYIHINV 195 Query: 195 AFEFLLYSGLRCSDSCRAGVQH-------------------------------------- 216 F + +G R + + Sbjct: 196 LK-FAVTTGCRIGEVLGLKWEDCDFGKREITINKTIHYSKASSPVEGSKFFYTTAKTISS 254 Query: 217 ---LQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273 + + + I E + + F +D + + Sbjct: 255 NRVIPMTDEVYEILQNQKIKQTEQKMWKRSIWKQHKEFQNLVFTCSDGSPVYYYNVNSAI 314 Query: 274 KAKATKAGV------------NK-----SAHGVRKFSATISADAGATAHELMATYGWKTV 316 K K V K + H +R AT + G + G T+ Sbjct: 315 KDYVAKINVIEIELAKEEKREPKIFELFTCHTLRHTYATRCYENGVDQQVVQKLLGHSTL 374 Query: 317 DQ-AETYTKGA 326 + YT + Sbjct: 375 AMTTDLYTHVS 385 >gi|189500094|ref|YP_001959564.1| putative transcriptional regulator, TetR family [Chlorobium phaeobacteroides BS1] gi|189495535|gb|ACE04083.1| putative transcriptional regulator, TetR family [Chlorobium phaeobacteroides BS1] Length = 408 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 39/306 (12%), Positives = 87/306 (28%), Gaps = 58/306 (18%) Query: 81 SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKHTPSSAIQF 136 + + + S++++ + + + ++ + R+ + S+ Q Sbjct: 102 ALRLRHRSYRTEQSYKAWVRRFGAFLEHKSPQAVEQSDLQRFLSSLAVERRVSASTQNQA 161 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196 ++ LF+ + ++ + + RP + ++E+++ +E + L Sbjct: 162 FNALLFLFRHVLDKKVSGMEATVRSNRP---RKLPVVLSREEVRSILEIMNEVT--WLMA 216 Query: 197 EFLLYSGLRCSDSCRAGVQHLQN------------------------------NIFSIKT 226 + GLR + + ++ + ++ I+ Sbjct: 217 SLIYGGGLRIDECLKLRIKDIDFDRGFLTVRSGKGNKDRQTLFPKNLAEPLRNHLSEIRN 276 Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK-----------------MNATQF 269 LA + M T Sbjct: 277 IHEEDRRNGIEGVSMPGALAYKYPNAGKEWGWFWVFPSANLSADPVTNTIRRHHMYPTTV 336 Query: 270 SIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 FK KAGV K S H +R AT +AG + G + YT A Sbjct: 337 QKAFKQAREKAGVVKQASVHTLRHSFATHLLEAGYDIRTVQELLGHANLQTTMIYTHVAK 396 Query: 328 RIRLGI 333 + LG+ Sbjct: 397 KNMLGV 402 >gi|150004634|ref|YP_001299378.1| transposase [Bacteroides vulgatus ATCC 8482] gi|149933058|gb|ABR39756.1| transposase [Bacteroides vulgatus ATCC 8482] Length = 407 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 40/283 (14%), Positives = 92/283 (32%), Gaps = 27/283 (9%) Query: 72 KWLISEYRKSAHW------GSLAVNSRISFESYFDQ----IIRKSGDFD--YRKITTKHI 119 + L +R+ +A + +E+ + D ++ + I Sbjct: 109 RTLFEVFREHNDKCAQLSGTDMAPATVQRYETSLKHTQDFVWETYHKKDILLGDVSRQFI 168 Query: 120 RSGVESRK----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 K ++A ++L + + + + A+ + ++ +P ++ Sbjct: 169 EDYEFWLKTEKKCCHNTATKYLKNFKKIIRIALAKGWMKNDPFSEIKF-SLDKVEPDFLE 227 Query: 176 KEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 ++Q+ S + + R F F ++GL SD +H+ + K + G Sbjct: 228 DSEIQKLISKEIDIPRLGQVRDVFVFCCFTGLAFSDIHDLKKEHIVEDSNGAKWIRKGRQ 287 Query: 233 ITVELPD-----GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA- 286 T + + +K+L + + + + + K A G+ K+ Sbjct: 288 KTKIMCNIPLMEVPLKILGKYSTNEYCKSRGVLFPVLCNQKMNAYLKELADICGIKKTLT 347 Query: 287 -HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 H R AT + G + + G V Y + DR Sbjct: 348 THVARHTFATFALANGVSIESVAKMLGHTNVQMTRHYARVLDR 390 >gi|148990176|ref|ZP_01821407.1| prophage LambdaSa1, site-specific recombinase, phage integrase family protein [Streptococcus pneumoniae SP6-BS73] gi|148993411|ref|ZP_01822928.1| prophage LambdaSa1, site-specific recombinase, phage integrase family protein [Streptococcus pneumoniae SP9-BS68] gi|168488714|ref|ZP_02712913.1| integrase [Streptococcus pneumoniae SP195] gi|147924443|gb|EDK75532.1| prophage LambdaSa1, site-specific recombinase, phage integrase family protein [Streptococcus pneumoniae SP6-BS73] gi|147927966|gb|EDK78986.1| prophage LambdaSa1, site-specific recombinase, phage integrase family protein [Streptococcus pneumoniae SP9-BS68] gi|183572844|gb|EDT93372.1| integrase [Streptococcus pneumoniae SP195] Length = 375 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 42/373 (11%), Positives = 117/373 (31%), Gaps = 52/373 (13%) Query: 18 HGKIIYYFRKGH---GRRIRLPYPHESTFIPAY-MSALTGSTPKREYINSPRKKPTTLKW 73 +GK ++ R + ++ E A +A+ + +++ + + T + Sbjct: 8 NGKYKFFERYKDPYTEKLKKVSVTMEKKTPQARNQAAILLQEKINKKLSTKQVESITFEE 67 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESRKHTPS- 131 + + + KS ++ +++ + +S ++ D + + ++ +E + Sbjct: 68 IYNLFYKSW-AQTVKESTKHNCKSVDKKMKEVIPSDTILANLDRRFLQEAIEKIIESNGY 126 Query: 132 -SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ--QFKSFWSE 188 +A + +R +F +AV+ Y+ N P++ K + + Sbjct: 127 ITAKKVRHRLRGIFNYAVQYSYIENNEVDYTTIPQKPKTLEELEKKRNNFLTMQEIKALV 186 Query: 189 GSQPRLAFEFLL--------YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------- 232 R + +G+R + ++++ I+ Sbjct: 187 DVLNRREYHQKYADMVLVLTLTGMRYGELTALQLKNIDFENNKIEITGNFDSVNKIKTLP 246 Query: 233 ------ITVELPDGFMKLLAMTPIG-----------KETFFINNDKQKMNATQFSIWFKA 275 T+++ + ++ + + F Q F K Sbjct: 247 KTTNSIRTIKVSESVIEAIQRQIVRLSERFQPLSSDDYIFCFEKWNQPTTIACFIQILKK 306 Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLG 332 +A + K S+H R + A++G +M G E Y+ + Sbjct: 307 YGKQAKIEKNLSSHIFRHSHISFLAESGLPIKSIMDRVGHSNAKMTLEIYSHTTE----- 361 Query: 333 IKNSRRISSVVDS 345 ++ + +D+ Sbjct: 362 -DMEDKLVNKLDT 373 >gi|153821954|ref|ZP_01974621.1| DNA integrase IntI1 [Vibrio cholerae B33] gi|126520493|gb|EAZ77716.1| DNA integrase IntI1 [Vibrio cholerae B33] Length = 311 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 34/286 (11%), Positives = 76/286 (26%), Gaps = 52/286 (18%) Query: 91 SRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVR 149 + ++ + IR G + + + + + + S ++ L + + Sbjct: 7 TEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGK 66 Query: 150 QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209 + + RP+ T +++ + + RL + L +G+R S+ Sbjct: 67 VLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEHRLFAQLLYGTGMRISEG 124 Query: 210 CRAGVQHLQNNIFSIKTQKTG----------------------TIITVE----------- 236 + V+ L + +I ++ Sbjct: 125 LQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGV 184 Query: 237 --------------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 + + A + + M F FK +AG+ Sbjct: 185 ALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGI 244 Query: 283 NK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 K + H +R AT +G + G V YT Sbjct: 245 TKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHVL 290 >gi|258612347|ref|ZP_05270117.2| DNA integration/recombination/invertion protein [Listeria monocytogenes F6900] gi|293596731|ref|ZP_05263903.2| DNA integration/recombination/invertion protein [Listeria monocytogenes J2818] gi|258611034|gb|EEW23642.1| DNA integration/recombination/invertion protein [Listeria monocytogenes F6900] gi|293591908|gb|EFG00243.1| DNA integration/recombination/invertion protein [Listeria monocytogenes J2818] Length = 393 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 47/347 (13%), Positives = 95/347 (27%), Gaps = 48/347 (13%) Query: 29 HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA 88 G++IR + A L+ + K + ++R + L Sbjct: 29 RGKQIRKTKNVTVKTVKALKLELSNFEAYVYSSDYTEIKDMRFIDFVEKWRLNYAKRELK 88 Query: 89 VNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTSMRVLF 144 N+ + + + II KITT + + PS+ +R LF Sbjct: 89 GNTIDKYNLFLENWIIPYFERKKISKITTMQLLDYFHEVQKKGVGPSALEGHHRVIRSLF 148 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-GSQPRLAFEFLLYSG 203 K+A + LSV++P K + + +++ ++ + LY G Sbjct: 149 KYATLWGITETDVSLSVKKPTYKVPEKNIYNRREIEVLIDRIKILQKYQQVMIKLALYCG 208 Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQ-----------------KTGTIITVELPDGFMKLLA 246 LR + + + N +I I ++ Sbjct: 209 LRRGEVIGLTTKDMNYNKNTINVYRAVIKSASEGIKLDETKNKRKRIVPAPAGLMQEIKE 268 Query: 247 MTPIGKET---------------------FFINNDKQKMNATQFSIWFKAKATKAG---- 281 + ++ F ++D + F K Sbjct: 269 LAKEKQKNKDKLGLLWKGTKDLDGKTVVLIFSHDDGTPFTPASVTRMFNRFLEKEENNDL 328 Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD 327 S H +R +A+ + G + G + TY + Sbjct: 329 TKISFHDLRHSAASFLLEQGINVKVIQNILGHSDIKVTLNTYAHITE 375 >gi|168178695|ref|ZP_02613359.1| site-specific recombinase, phage integrase family [Clostridium botulinum NCTC 2916] gi|182671520|gb|EDT83494.1| site-specific recombinase, phage integrase family [Clostridium botulinum NCTC 2916] Length = 356 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 34/359 (9%), Positives = 95/359 (26%), Gaps = 36/359 (10%) Query: 12 TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAY---MSALTGSTPKREYINSPRKKP 68 +++ + + I ++ G+ + T L + Sbjct: 7 WRKKDKGWQFIISYKDSTGKWKQKSKQGFKTQKDGKPIIEKLLKDLNSNIKNNVDIHDSE 66 Query: 69 TTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--- 124 K + Y + + + ++ F + D R + ++ ++ Sbjct: 67 KNFKEITEIYLEHIILYKEY--YTVKGYKDCFSKF-NALNDKKIRAMQRCDVQKIIDNFI 123 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEY-VAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 S+ +L + FK+ + P +++ PK K+ + + Sbjct: 124 KEGLKQSTIETYLRRINTFFKYVRDDLNLIIELPTTNIKIPKEKSNTNKKALNKKELYNL 183 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------- 232 + ++ + +G+R + + ++ K I Sbjct: 184 LENLKNNKFYIVAFIAANTGMRLGEILGLTWNDVDFKDNTVNVNKQWKILKNGKSGFGPV 243 Query: 233 ------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA 286 + + L T N + + A + S Sbjct: 244 KSKNSNRIIPISKNVKNELKNYKKNNPTDIYNRVAPFSTNSINNYLNSKLRELASI--SL 301 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345 H +R AT+ +G + G Y+ D ++ ++++++ Sbjct: 302 HELRHTYATLLISSGIDFKTVAKILGHDVEQTMRIYSHVND------DMMKKATNIIEN 354 >gi|126434804|ref|YP_001070495.1| phage integrase family protein [Mycobacterium sp. JLS] gi|126234604|gb|ABN98004.1| phage integrase family protein [Mycobacterium sp. JLS] Length = 388 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 54/371 (14%), Positives = 97/371 (26%), Gaps = 49/371 (13%) Query: 18 HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT-----TLK 72 G F GRR + P + +L + R+ P T T + Sbjct: 16 GGHYRARFTGPDGRRYKAPTTFLTKGDARAWLSLQQADIIRKAWTPPEATRTVDRKLTFR 75 Query: 73 WLISEYRKSAHWGS--LAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH- 128 + + + L + +R + + I G IT +R+ Sbjct: 76 DYATVWLYNRRVKGEALKMRTREHYAWLLAEHIYPTFGAMPVGSITADDVRAWHNRMGKA 135 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 TP++ + + AV A++PC+ + + + Sbjct: 136 TPTARSHAYGLLNAIMNTAVADGKAALSPCVIRGAGTSRRVKKIRPATLAELEALTNAMP 195 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL--- 245 + LR + + ++ + + + + E + + Sbjct: 196 APYQ-AMILLASWCALRFGELTELRRKDVELSTSVERDDQGQEVTVHEGLIHVERAVVRA 254 Query: 246 ----------------------------------AMTPIGKETFFINNDKQKMNATQFSI 271 + G F + Sbjct: 255 GDGYEVTTPKSDAGTRDVAIPPHLVPVIEAHLADHVGIWGDALLFPAKHGGHLAPATLYR 314 Query: 272 WFKAKATKAG-VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD-RI 329 F T AG + H +R A ++A GAT ELMA G T A Y A R Sbjct: 315 RFYTARTAAGRPDLRFHDLRHSGAVLAAQTGATLAELMARLGHSTPQAAMRYQHAAQGRD 374 Query: 330 RLGIKNSRRIS 340 R RI+ Sbjct: 375 RQIAAALSRIA 385 >gi|24373596|ref|NP_717639.1| phage integrase family site specific recombinase [Shewanella oneidensis MR-1] gi|24347924|gb|AAN55083.1|AE015645_9 site-specific recombinase, phage integrase family [Shewanella oneidensis MR-1] Length = 287 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 35/267 (13%), Positives = 78/267 (29%), Gaps = 21/267 (7%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRK 127 L+ ++ + +R ++ Q+ + + IT + + + R Sbjct: 2 SSLLQQFHDEISLRGYSARTRNAYLYAITQL-QHYANQPLDNITDEQLTAYFRYLNLERH 60 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 H+ ++ L + ++ +++++ + + Sbjct: 61 HSRATLKLQLNGIHFFYEHVLKRDFTIQLSLPKR------PHKLPQLLSCQDIAALLYHC 114 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLL 245 + + R GLR S+ V + +K + V L + LL Sbjct: 115 QNLKQRAMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGKGACDRWVILSPTLLILL 174 Query: 246 AMTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297 ++ ++ + F A A + S H +R AT Sbjct: 175 RQYWQAYHPVEWLFASTYHDVVYPLHESTFRKALAKAARLASITKPCSPHSLRHAYATHQ 234 Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324 AG H+L A G ++ E Y Sbjct: 235 LQAGMPLHQLQAQLGHHSIKSTERYLH 261 >gi|296163757|ref|ZP_06846462.1| integrase family protein [Burkholderia sp. Ch1-1] gi|295885996|gb|EFG65909.1| integrase family protein [Burkholderia sp. Ch1-1] Length = 334 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 35/283 (12%), Positives = 79/283 (27%), Gaps = 36/283 (12%) Query: 76 SEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGD--------FDYRKITTKHIRSGVE-- 124 + K +++ + S+ F +++ ++ I + ++ Sbjct: 14 EFFLKHLMTHRNVSPQTLWSYRDAFRLLLQFIDTTMHIEPVALSLTHLSPAVILAFLDSL 73 Query: 125 --SRKHTPSSAIQFLTSMRVLFKWA---VRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 R + S L ++R F+W L++ + I ++ ++ Sbjct: 74 EKERNNAVRSRNARLAAVRSFFRWVAISRPDFAGLSTSILAIPTKRTDRRLICALSRPEI 133 Query: 180 QQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIKTQKTGTI 232 G + + +G R S+ ++ ++ F K Sbjct: 134 DAILGAPDLSTPCGRRDHAMLLTMYNTGARVSEITSMACSQVELGGHSSFVHLHGKGRKE 193 Query: 233 ITVELPDGFMKLLAMTPIGKETF-----FINNDKQKMNATQFSIWFKAKAT--------K 279 V L L + F N +++ K Sbjct: 194 RCVPLWAATADALTKWMREQNAVPTSLLFTNYRGEQLTRNGVDCILKKAIAGGVNSCPSL 253 Query: 280 AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 + + S H VR +AT AG + G +++D Y Sbjct: 254 SKKHISPHVVRHATATHLLQAGVDISVIALWLGHESIDTTHIY 296 >gi|292557929|gb|ADE30930.1| putative transposon integrase, Tn916 ORF3-like protein [Streptococcus suis GZ1] Length = 432 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 51/401 (12%), Positives = 105/401 (26%), Gaps = 84/401 (20%) Query: 11 VTKERTRHGKIIYYFRKGHGRR-------------IRLPYPHESTFIPAYMSALTGSTPK 57 + R K R G +R + Y + T Sbjct: 15 IMPRTKRKDKSRVVLRTGESQRADGTYHFSWTDANHKRRYVYAKTLDELRYKE-EQIAKD 73 Query: 58 REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITT 116 + + TT+ + ++ L N+ +++ ++ +R G + Sbjct: 74 KSDGIKVEARYTTVNDIYELWKDLK--RGLKNNTFENYKYMYETFVRHQIGSKTVSSLRK 131 Query: 117 KHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS-----VERPKRK 167 I+ + R P++ T + + AV +Y+ NP + + + Sbjct: 132 TDIKRFYNYLADERHLKPATIDNIHTVLHQILDMAVDDDYIRNNPSNNVLKELKQSHCFQ 191 Query: 168 TEGIRPWTKEDMQQFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHL------- 217 TE R TK + + F + F ++ +GLR + + Sbjct: 192 TEKRRALTKPEQELFLDYLKNSPTSKYWYPVFAVMIGTGLRVGEVTGLRWCDIDLEEGII 251 Query: 218 --QNNIFSIKTQKTGTIITVE--------------------------LPDGFMKLLAMTP 249 + + + G+ + +LL + Sbjct: 252 DVNHTLVYYDHRTEGSKRGCYFNVNTTKTPAGRRKVPMLGFVKEAFLMEKERQELLDLHC 311 Query: 250 I-----GKETFFINNDKQKMNATQFSIWFKAKATKAG--------------VNKSAHGVR 290 + FIN Q + + + + S H +R Sbjct: 312 EATVDGYTDFIFINRFGQPQHQATLNKAIRRIIRDCNDEQLLKDENAEVLLPHFSCHSLR 371 Query: 291 KFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330 T +AG + T G K + YT +R Sbjct: 372 HTFTTRMCEAGVNVKVIQDTLGHKDISTTLNIYTDVTKELR 412 >gi|329848271|ref|ZP_08263299.1| phage integrase family protein [Asticcacaulis biprosthecum C19] gi|328843334|gb|EGF92903.1| phage integrase family protein [Asticcacaulis biprosthecum C19] Length = 442 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 50/374 (13%), Positives = 103/374 (27%), Gaps = 64/374 (17%) Query: 14 ERTRHGKIIYYFRKGHGRRIRL------PYPHESTFIPAYMSALT---GSTPKREYINSP 64 G+ +Y + G+ R+ P +A+ G+ Sbjct: 37 RVYASGRKVYAVKYRLGKAQRIFTIGTHGSPWTPEKAREKATAVLKDVGNNIDPAAEKLA 96 Query: 65 RKKPTTLKWLISEYRKS---AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121 + T+ L+ EY + AV+ II G ++T + Sbjct: 97 DRHAMTVADLVKEYIERGPQTKANKRAVSWAADESCLRRHIIPTVGKDAADRLTNEGAAK 156 Query: 122 GVESRKHTPSS--------------------AIQFLTSMRVLFKWAVRQEYVAINPCLSV 161 + + + ++ A + + +F W ++ V NP + Sbjct: 157 AIYAIRMGKTAVVEKSDKPRGKAVVTGGEAVARRTRSVAAAMFAWGIKHGLVKRNPFTGI 216 Query: 162 ERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL---AFEFLLYSGLRCSDSCRAGV 214 + P R ++ + F +EGS R+ A LL +G R S+ Sbjct: 217 DLPAA-PVKERFLSQAEAGAFLDALAGLEAEGSVDRVYGDALRLLLLTGARKSEIANLTW 275 Query: 215 QHLQNNIFSIKTQKTGT-------IITVELPDGFMKLLAMTPIGKETFFINNDKQ----- 262 + + + T + L +++L+ + + + K Sbjct: 276 SEVDFDRRCLVLPPERTKAGGKTGERRIMLMPAALEILSRRYKARSDYVGIDGKPLDLPL 335 Query: 263 -KMNAT----------QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMAT 310 + F A + H +R A+ + GA+ + Sbjct: 336 VFPSPRTLNTTGGPIVGLRRIFAKACLAADIKGVRLHDMRHSFASFAVAGGASLFLVSKL 395 Query: 311 YGWKTVDQAETYTK 324 G E Y Sbjct: 396 LGHSNSRTTERYAH 409 >gi|238760428|ref|ZP_04621566.1| Int [Yersinia aldovae ATCC 35236] gi|238701323|gb|EEP93902.1| Int [Yersinia aldovae ATCC 35236] Length = 284 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 33/273 (12%), Positives = 79/273 (28%), Gaps = 15/273 (5%) Query: 55 TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI 114 ++ + + L L+ + H +L + + + + + GD ++ Sbjct: 3 NANKKEWSDKQLDRRLLSDLVETWWL-YHGQNLKNGTIE--KRHLMKTLTALGDKVVSQL 59 Query: 115 TTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 T + + R + ++ + L + +F ++ E + P + Sbjct: 60 TKRELMEHRSQRLADGISAATINRDLYRLSGMFSALIKIEEFSGQNPQHGLPPLAEKNPG 119 Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 + + G RL L +G R + + NN + K G Sbjct: 120 MTFLDTEEINRLLAVLSG-DERLIALLCLSTGGRWGEVSTLTAAQVVNNRVTFLETKNGK 178 Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRK 291 T+ + + + + K++ +F + ++ H +R Sbjct: 179 KRTIPISAELQE--------EVKTNASGKLFKVDYGKFCETLRMVKPDLPRGQATHVLRH 230 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324 A+ G L G + Q Y Sbjct: 231 TFASHFMMNGGNIIALQQILGHANIQQTMAYAH 263 >gi|220927371|ref|YP_002502673.1| integrase family protein [Methylobacterium nodulans ORS 2060] gi|219951978|gb|ACL62370.1| integrase family protein [Methylobacterium nodulans ORS 2060] Length = 425 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 50/346 (14%), Positives = 101/346 (29%), Gaps = 46/346 (13%) Query: 26 RKGHGRRIRLPYPHESTFIPA--------YMSALTGSTPKREYINSPRKKPT-TLKWLIS 76 R G+R+++ A + R +P +PT T+ + Sbjct: 54 RLPDGKRVQVRLGRADDVAQADGSTVLTHEQAKEATRAWVRSLQAAPDAQPTLTVADALE 113 Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS----- 131 Y ++ + + I+ K G +T +R ++ H P Sbjct: 114 RYLEARTAEGMKAV-YDARSRARTHILPKLGATRVSDLTLDKLRRWRDAMVHAPKRVRTG 172 Query: 132 ------------------------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167 +A + LT ++ WA + + + + +P R Sbjct: 173 KLAKQVNTRPVDLSDPEALRRRRDTANRTLTLLKAALNWAYQHQLADNDRAWRLLKPFRD 232 Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227 T R + +Q + + R L +G R + R V+ ++ + Sbjct: 233 TGSARVRFLDAAEQQRLLNTCDGALRDLVATALMTGARFGELSRLMVRDFDRANGTVFIE 292 Query: 228 KTGTIITVELPDGF-----MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 ++ +P + L+ K I + + + FK +A + Sbjct: 293 RSKNGRARHVPLTPGGVALFERLSAGRAPKALLLIRENGEGWGPATYQRSFKTALDRAKL 352 Query: 283 N-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGA 326 + H +R A+ GA + G AE Y A Sbjct: 353 ESITLHELRHSYASAMVRNGAPLIVVAEALGHSGTRMAEKHYAHLA 398 >gi|323344112|ref|ZP_08084338.1| tyrosine recombinase [Prevotella oralis ATCC 33269] gi|323094841|gb|EFZ37416.1| tyrosine recombinase [Prevotella oralis ATCC 33269] Length = 345 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 41/306 (13%), Positives = 88/306 (28%), Gaps = 41/306 (13%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD--------YRKITTKHIRSG 122 LK Y ++ ++ S+ + F + D + ++ + I Sbjct: 14 LKDFFETYL--PKERGVSSHTIRSYSATFQSLYAFFKDNKGIRANKLFVKDLSRRSINDY 71 Query: 123 VESRKHTPS----SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + + L S++ +A +++ I + K K + + Sbjct: 72 LNWLEMKKGNKVPARNSRLASVKAFCHYAQYKDFKNIARWQEILSIKSKKSDMPCISFLT 131 Query: 179 MQQFKS-------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT--QKT 229 + K+ +G + FL +G R ++ +L K Sbjct: 132 QEGMKTLLSEVPTDTIQGRRHLAILAFLYDTGARANELISFSAHNLNLTKPYHVVLSGKG 191 Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM---------NATQFSIWFKAKATKA 280 V + + + +L N KQ + + + A K Sbjct: 192 RKKRIVPIHEKLVLILKAYMKDTNIEPDNISKQPLFVNIHGRRLTSAGLTHIIMMYADKV 251 Query: 281 GVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRL 331 S H R AT AG + G +V ETY + +++ R Sbjct: 252 REKHPALMPERLSPHSFRHSKATHLLQAGMNIIYIRDFLGHSSVKTTETYVRMDSEQKRK 311 Query: 332 GIKNSR 337 ++ + Sbjct: 312 ALEAAA 317 >gi|294673638|ref|YP_003574254.1| prophage PRU01 site-specific recombinase [Prevotella ruminicola 23] gi|294472192|gb|ADE81581.1| prophage PRU01, site-specific recombinase, phage integrase family [Prevotella ruminicola 23] Length = 381 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 41/258 (15%), Positives = 82/258 (31%), Gaps = 12/258 (4%) Query: 79 RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK----HTPSSAI 134 RK +LA NS + + +T ++R+ + T + Sbjct: 114 RKHMEQENLAQNSIKDIKVVLKSVEESGLLNTLADLTPANVRAYDAWLRKPNTRTDYTIN 173 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG--SQP 192 + +R K +QE ++I+P V+ PK + P T+ ++ + + G + Sbjct: 174 GYHKKVRKYTKILWQQEIISIDPYDHVKFPKGTNKERHPLTENEIIKIRDAEFYGRKDRA 233 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252 R F F+ Y+GL D C + + F +L Sbjct: 234 RDLFVFMAYTGLAYCDMCLFNFKT--MTELHDDYYYIDGARLKTGSNFFTPILPPALAVL 291 Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMAT 310 E + + + + + + + H R AT+ G ++ Sbjct: 292 EKYDFKLPII--SNQKLNDYLHLIQDTLDIRNEVTCHIGRHSFATLMLTYGIPIEKVKRM 349 Query: 311 YGWKTVDQAETYTKGADR 328 G K + + Y K + Sbjct: 350 LGHKNIATTQIYAKILKK 367 >gi|325289641|ref|YP_004265822.1| integrase family protein [Syntrophobotulus glycolicus DSM 8271] gi|324965042|gb|ADY55821.1| integrase family protein [Syntrophobotulus glycolicus DSM 8271] Length = 378 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 40/371 (10%), Positives = 106/371 (28%), Gaps = 43/371 (11%) Query: 10 FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 + + + G+ + K G+ L + E + R Sbjct: 7 NIYERKD--GRWVCRVLKPDGKHRYLYGQSYDEVQNKKEKLMKAFLSLPETSPNSRHP-- 62 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYR--KITTKHIRSGV--- 123 L L+ ++ + + S+ +I + I+ HI+ + Sbjct: 63 -LSCLLKKWLNDDVRERVKPTTYDSYYYCMATYVIPFFDSLEIGGGAISEGHIKYFISYI 121 Query: 124 -ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 ++ + + + L+ + K + + + PK K+ + ++ ++ + Sbjct: 122 SRNQHLSETYKRKVLSIFKTALKKIFKNAENYRSIMEAFHLPKSKSVPVAVFSMKEQRLI 181 Query: 183 KSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAGVQHLQ--------------------NNI 221 ++ + R + Y+G+R + C + + + Sbjct: 182 EAEIMRDNDIRSVGILLCFYTGIRLGELCALSWKDVDLDAKTLLINGTVSRIKKKNTQHG 241 Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPI-------GKETFFINNDKQKMNATQFSIWFK 274 + + T + L ++++ +N K + + +K Sbjct: 242 KTQLSITTPKSRSSMRKIPIPNFLIQKMRSLESSQSKEDSYIFSNKKGPTDPRTYQRVYK 301 Query: 275 AKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGA-DRIRL 331 KA + + H +R AT + + L G +V TY ++ + Sbjct: 302 RLLDKAKITPRKFHAIRHTFATRALEMSVDIKTLSELLGHSSVTVTLNTYAHSLMEQKII 361 Query: 332 GIKNSRRISSV 342 I Sbjct: 362 AIDKMNSFYEK 372 >gi|318606029|emb|CBY27527.1| integrase [Yersinia enterocolitica subsp. palearctica Y11] Length = 314 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 40/292 (13%), Positives = 79/292 (27%), Gaps = 31/292 (10%) Query: 54 STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113 + + + L LI + +++ + + + I + G+ Sbjct: 2 EQARHKPWLGEKDDRRKLLELIDLWY---QLHGCSLSDKKGRLAKLEIICKGLGNPIAAD 58 Query: 114 ITTKHIRSGVESR----------------KHTPSSAIQFLTSMRVLFKWAVRQ-EYVAIN 156 IT K + R T + +R +F R E+ N Sbjct: 59 ITPKDWAHYRDQRLRGEINNGYSTSLRTRMVTTGTVNSEQAYLRAVFNELTRLGEWSLPN 118 Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGV 214 P +++ + + + + P L L +G R ++ + Sbjct: 119 PLMNIREFDQPEREMAWLNDDQIDSLLDACDLHGNPELTLIVRLCLSTGARWNEIAKIKA 178 Query: 215 QHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274 + N + K TV L + + LA QF + Sbjct: 179 SQISPNKITFINTKGKKNRTVPLSEDIYQALAARKGKPFEPC---------YKQFYRVIR 229 Query: 275 AKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 + V + H +R A+ AG L G + Y+ A Sbjct: 230 LAQIELPVGQMTHVLRHTFASHFMMAGGNIIVLQRILGHSDIRVTMRYSHFA 281 >gi|298292615|ref|YP_003694554.1| integrase family protein [Starkeya novella DSM 506] gi|296929126|gb|ADH89935.1| integrase family protein [Starkeya novella DSM 506] Length = 458 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 53/317 (16%), Positives = 95/317 (29%), Gaps = 38/317 (11%) Query: 45 PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR 104 A +A + + ++ T+ ++ Y ++ + + + I Sbjct: 84 QAKDAARAWAKSIKAGSDAS--PALTVDAILDRYFEARAAEGMK-SIYDAKSRAGLHIRP 140 Query: 105 KSGDFDYRKITTKHIRSGVESRKHTPS-----------------------------SAIQ 135 K G ++T IR ++ P +A + Sbjct: 141 KLGKLRISELTVDKIRRWRDAMAAAPRKVRTGKHAAKPNLRPVDPNDPEATRRRRDTANR 200 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195 LT+++ WA Q V + + +P R T R D +Q + + R Sbjct: 201 TLTTLKAALNWARDQRLVDDDTAWRLVKPYRGTTAARVRFLSDGEQQQLLDNAEGDVRNL 260 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKL--LAMTPIG 251 L +G R + R V+ N I K+G V L G L L Sbjct: 261 IAAALLTGARFGELARLLVRDFDAANGSIFIAESKSGKARHVPLTTGGRALFSLLAGGRS 320 Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMAT 310 + + + + F A AG+ + + H +R A+ AGA + Sbjct: 321 GSAPMLTRNDEAWRPATYQRAFHAALEAAGLSDITLHELRHSYASTMVRAGAPLMVVARA 380 Query: 311 YGWKTVDQAE-TYTKGA 326 G E Y A Sbjct: 381 LGHADTRMVEKHYAHLA 397 >gi|291544956|emb|CBL18065.1| Site-specific recombinase XerD [Ruminococcus sp. 18P13] Length = 441 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 49/399 (12%), Positives = 112/399 (28%), Gaps = 80/399 (20%) Query: 4 SLRLP-PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTG--------- 53 LP ++ ++ +++ F+ G+R R + +Y + Sbjct: 2 KASLPFKYIIADKKGKNYVVFDFKDDSGKRKRKWVTTDLPADCSYKALTAKVNVIVAKFY 61 Query: 54 ----STPKREYINSPRKKPTT------------------LKWLISEYRKSAHWGSLAVNS 91 + + +P++K T + + ++ LA S Sbjct: 62 EEFLTGRLTKVKEAPKEKEKTELSEEILSDDAECKTGFEFTAFLDYWLETIKPT-LARTS 120 Query: 92 RISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLF 144 S+ Y +I +T ++ + ++ +S + ++ Sbjct: 121 HQSYTRYITRIKNYFDERYPHLLLGNLTALQLQQFYNDKYNSGLSGNSVKHYHANIHKAL 180 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204 K+AV+ + + IN VE PK + + +D + +G + L Y GL Sbjct: 181 KYAVKMDMLDINVADKVELPKIQKFEA-NFYNKDELEQLFEVFKGDRLELVVHIAAYYGL 239 Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTI---------------------ITVELPDGFMK 243 R S+ + + ++ + T L + Sbjct: 240 RKSEIIGLKWDSVNFEEKKLTVRRKVSSTYGSGKEMIFVENQLKTESSVRTFPLIPHIEQ 299 Query: 244 LL----------------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SA 286 +L +N + + + FK K + Sbjct: 300 MLIERKTLEEYYSKLLGKDFDREYDGFVCRDNFGKLITPNFVTSHFKYIIQKNKLKHIRF 359 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTK 324 H +R A++ G + + G T + Y+ Sbjct: 360 HDLRHSCASLLLANGVSMKAIQEWLGHSTFNVTANFYSH 398 >gi|289165155|ref|YP_003455293.1| phage integrase [Legionella longbeachae NSW150] gi|288858328|emb|CBJ12196.1| putative phage integrase [Legionella longbeachae NSW150] Length = 333 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 44/334 (13%), Positives = 97/334 (29%), Gaps = 18/334 (5%) Query: 16 TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75 R + R + Y + K + + + Sbjct: 5 KRKNIWWISISQNGQRIQQSTGTTSKIAAQEYHDKFKA--ELWSQVKLESKCIYSWQDAV 62 Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS---GVESRKHTPSS 132 + K S + + F +IT + E TP++ Sbjct: 63 VRWLKENEHK----RSLKDDIMHLRWLDPYLRGFQLHEITRDILEEVAIKKEDTGVTPTT 118 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 + L +R + + + E+ ++ V + + IR T + + + S Sbjct: 119 INRMLEVVRAILR-KAQMEWEWLDKVPVVRMRHVEKQRIRWLTIGEANRLLN--ELPSHL 175 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQH---LQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249 + +F L +GLR S+ ++ + + Q + + Sbjct: 176 KDMADFSLSTGLRASNVTGLRWSDVDLIKRHAWIHPDQAKANKAIPVPLNAHALAILKRR 235 Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELM 308 G T ++ + K + ++ +AG++ H +R A+ G + EL Sbjct: 236 RGIHTDYVFTYQDKQIRQCNTKAWRKALDRAGIDNFRWHDLRHTWASWHVQNGTSLQELQ 295 Query: 309 ATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342 GW + + Y + + RIS + Sbjct: 296 QLGGWSSFEMVLRYAHLSGEH--LRDAANRISGL 327 >gi|241992502|gb|ACS73585.1| IntI [uncultured bacterium] Length = 307 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 36/302 (11%), Positives = 72/302 (23%), Gaps = 52/302 (17%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS-S 132 L+ + R ++ + ++ + + I G +++ + + S Sbjct: 8 LLDQVRDQLRVKHYSIRTEQAYVDWIKRFILFHGKRHPQEMGAPELEVFLTDLAVRGGVS 67 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 A ++ + + + +V R KR T +++ Sbjct: 68 ASTQNQALSAVLFLYREVLKIDLPWLDNVIRAKRPQRLPVVLTPVEVRAVLERM--DGVY 125 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVELPDGFMKLL----- 245 L L +G+R + R V+ + I + K G LP L Sbjct: 126 ALMGRLLYGTGMRLMECVRLRVKDVDFGRNEILIRDGKGGKDRVTMLPSTVAATLADHLQ 185 Query: 246 -------------------------------AMTPIGKETFFINNDKQKMNATQ------ 268 + + Sbjct: 186 RRRVIFEDDLAAGKAEVWLPDALAKKYPGAGTEWAWQYVFCSGSYSTDPRSGRVRRHHID 245 Query: 269 ---FSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 K T A + K + H +R AT + G + G V YT Sbjct: 246 EKLLQRAMKKAVTAARLTKPATPHTLRHSFATHLLEGGYDIRTVQELLGHSDVSTTMIYT 305 Query: 324 KG 325 Sbjct: 306 HV 307 >gi|255012644|ref|ZP_05284770.1| site-specific recombinase [Bacteroides sp. 2_1_7] Length = 373 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 57/360 (15%), Positives = 105/360 (29%), Gaps = 32/360 (8%) Query: 11 VTKERTRHGKIIYYF-----------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE 59 + + GK Y F RI L + + Sbjct: 21 IYLDIYYKGKRYYEFLKLYLTPERFPEDRDKNRITLRLANSIKA----QRIIDLQNEIYG 76 Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119 TL +SE S S + + + I T + Sbjct: 77 VRMINGLGKKTLLEFLSELSTDKSAHGDKAYSLR-LRSLANHLRDYMPQCLLKDIDTGFV 135 Query: 120 RSGVESRKHTPS-----SAIQFLTSMRVLFKWAVRQEYVAINPC---LSVERPKRKTEGI 171 + + + P + + + V AV++ + NPC + E+P + T Sbjct: 136 KGFIAHLRKQPYLKSDFTIHGYYRLLNVTLNKAVKKGLILSNPCSLLDTDEKPHKPTSLR 195 Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 T E++++ + + AF F + GLR SD + +Q + Sbjct: 196 TYLTLEELKRLIRTDCVCPEVKKAFLFCCFCGLRISDLTALRWEDMQKEGNDKFRLQIIQ 255 Query: 232 IITVELPDGFM---KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KS 285 T E + + + E + + T K AG+ + Sbjct: 256 RKTKEAIYLPLSEEAIKYLPARENENDRLGLIFHLPSLTIICQVLKGWTLAAGIKNKKVT 315 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345 H R AT+S G + + G K + + Y K D + + R + V+D+ Sbjct: 316 FHVSRHTFATLSLALGIDLYTVCKLLGHKNIISTQVYAKIIDASKR--QAIDRFNGVLDA 373 >gi|228471367|ref|ZP_04056168.1| integrase [Porphyromonas uenonis 60-3] gi|228306868|gb|EEK15981.1| integrase [Porphyromonas uenonis 60-3] Length = 423 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 34/300 (11%), Positives = 94/300 (31%), Gaps = 23/300 (7%) Query: 64 PRKKPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKSGDF------DYRKI 114 ++ TL L ++ + S++ + ++ + D ++ Sbjct: 112 KKQDIDTLMQLFDKHNEDVAARVGISVSAPTLQKYKVCKRRFSEFLKDKLRRSDLKLTEL 171 Query: 115 TTKHIRSGVESRK----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170 T I + P++A + + + + + + + +P ++ + Sbjct: 172 TYMIIHDFDLYLRTVVGQNPNTATKTMKTFKTIVILGQKLGVLHHDPFVNFRF-HLEPVN 230 Query: 171 IRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227 T E++ Q + + R F F ++GL D ++ Sbjct: 231 RGFLTDEEVLQIVNKELNIPRLELVRDIFIFSCFTGLAYIDVANLTPDNIVMLGGKEWIM 290 Query: 228 KTGTIITVELPDGFMKL--LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 +VE + + ++ +T+ ++ + + + K A G+ K Sbjct: 291 TKRQKTSVETNVLLLDIPKRIISKYSHQTYRDGKLFPILSNQKTNSYLKEIADICGIKKN 350 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI--RLGIKNSRRISS 341 + H R AT+S G + G + + Y + ++ + + ++ Sbjct: 351 LTFHLARHTFATMSLSKGVPIESVSKMLGHTNIRTTQIYARITNKKIEHDMEQFADKLGK 410 >gi|210610924|ref|ZP_03288649.1| hypothetical protein CLONEX_00839 [Clostridium nexile DSM 1787] gi|210152224|gb|EEA83231.1| hypothetical protein CLONEX_00839 [Clostridium nexile DSM 1787] Length = 361 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 55/339 (16%), Positives = 97/339 (28%), Gaps = 41/339 (12%) Query: 18 HGKII----YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 G YY G R + T + Sbjct: 9 RGTWYVSFHYYDWTGKNCRKVKRGFKTKREATEWERHFRMKEAAEL--------DMTFED 60 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVES------- 125 + Y + L N+ ++ E +++ D R I K I Sbjct: 61 FVKAYTRDMKPK-LKHNTWLTKEHILRTKLLPYFKDKKMRDIRPKDIIQWQNEQISYRDE 119 Query: 126 --RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDMQQF 182 + + P+ + + LF AVR + NP + + E + WTKE+ +F Sbjct: 120 KGKPYAPTYLKTLQSELSALFNHAVRFYELKSNPVVKAGSLGKGKAEEMLFWTKEEYLKF 179 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------- 232 + AF+ L + GLR + Q + + I+ K+ Sbjct: 180 IEAIKDKPYSYHAFQILYWCGLRVGELLALTSQDIDFDNKVIRITKSYQRLEGEDVITDP 239 Query: 233 ------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-S 285 V +PD + L + + + A KAGV + Sbjct: 240 KTPKSKRNVSMPDFLCEELKDYIGRLYGILPTDRIFHLTKSFLHHEMTRGAEKAGVKRIR 299 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R ++ G +A + G ++VD Y Sbjct: 300 IHDLRHSHVSLLISMGFSAVSIGNRVGHESVDITYRYAH 338 >gi|315443040|ref|YP_004075919.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1] gi|315261343|gb|ADT98084.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1] Length = 403 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 50/345 (14%), Positives = 109/345 (31%), Gaps = 44/345 (12%) Query: 19 GKI-IYYFRKGH-GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76 GK+ + R R AY++ LT + EY++ PRK T + Sbjct: 34 GKVSRWRVRWVDATGAERTKSFQRKPDAQAYLNGLTADVQRGEYVD-PRKSAETFGTVAE 92 Query: 77 EYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESR------KHT 129 ++ + + + S D + + K D +++ + + + + + Sbjct: 93 QWFTTKQHR--KPKTVAGYRSLLDTVVLPKWEDVPLKRLDYESYSTWLGALSVDGGQRGA 150 Query: 130 PSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVER----PKRKTEGIRPWTKEDMQQF 182 SA + + + K+A R VA N L ++R P++ R + ++ Sbjct: 151 GLSASRITQAHQLVGAVLKYAQRTGKVAKNVALEIKRDEDLPEQAERERRYLSHAEL--- 207 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----------------- 225 + L Y GLR ++ +H+ + + +++ Sbjct: 208 LMLAKAADRFETLTLVLGYCGLRFGEAVALRRRHVGDRVLTVRSSATAVTGKGIVESTTK 267 Query: 226 -TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN- 283 + + + L P + + F + G+ Sbjct: 268 TKRDRHVPVPEPVWKRLHAELPTDPNALVFPSRKGGFLPLGE--YRWAFDNACAEVGIEG 325 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD 327 HG+R +A+++ AGA + G T + Y + Sbjct: 326 LVPHGLRHTTASLAISAGANVKVVQRLLGHATAAMTLDRYGHLLN 370 >gi|158522964|ref|YP_001530834.1| integrase family protein [Desulfococcus oleovorans Hxd3] gi|158511790|gb|ABW68757.1| integrase family protein [Desulfococcus oleovorans Hxd3] Length = 409 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 49/334 (14%), Positives = 95/334 (28%), Gaps = 21/334 (6%) Query: 24 YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL-ISEYRKSA 82 Y R + R T ++ K+ T Y Sbjct: 59 YDRLKELKENRKTGEGPQTLAEKRAIEDKRKDADKQARQLAEKENVTFGRFMAETYLPQC 118 Query: 83 HWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRS---GVESRKHTPSSAIQFLT 138 + E+ + + G+ + KI H+ + +K + L Sbjct: 119 K-RDKKPTTYAMEEALYRVHLAETIGNLPFGKIAAFHVERVKKAMADKKKAGRTIQYALQ 177 Query: 139 SMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-RLAF 196 R +F A ++ Y NP +V+ PK +R + ++ ++ + S Sbjct: 178 VTRQVFNMARKRGVYTGENPTSAVKWPKLDNMKMRYLSIDEAEKLFDALAAKSHNLHDMA 237 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255 L+SGLR + + + + T L +L G Sbjct: 238 LLSLHSGLRFGEIAKLTWSCVNWKAGTLAILDAKTGSRTAYLTTRAKAMLKNREEGAPNE 297 Query: 256 FINNDKQK--MNATQFSIWFKAKATKAGV---------NKSAHGVRKFSATISADAGATA 304 I + + + S F + G+ + H +R AT ++ Sbjct: 298 LIFQKRSGLDGSIARASKTFSRVVKELGLNQGITDRKQKVTFHTLRHSYATHLYESTHDL 357 Query: 305 HELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337 + + G T + Y K +R+R G Sbjct: 358 YLTQKSLGHTTSTMTQRYAKMTENRLREGSAALE 391 >gi|312887736|ref|ZP_07747325.1| integrase family protein [Mucilaginibacter paludis DSM 18603] gi|311299831|gb|EFQ76911.1| integrase family protein [Mucilaginibacter paludis DSM 18603] Length = 412 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 51/314 (16%), Positives = 107/314 (34%), Gaps = 31/314 (9%) Query: 46 AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF---ESYFDQI 102 + L + + + ++ TTL WL++ Y + L + ++ E Y + Sbjct: 85 RFNKELVNAEAIKAKVEGIDEEQTTLLWLMN-YHNTEIKKLLEDGTMKNYFTTERYVKEF 143 Query: 103 I---RKSGDFDYRKITTKHIRSG----------VESRKHTPSSAIQFLTSMRVLFKWAVR 149 + +K D ++ K + R ++ ++ + +R + AV+ Sbjct: 144 LLKKKKRHDIYLSQLDYKFVVDFEIYLRQREPDKNQRPCANNTVMKHIERLRKMINIAVK 203 Query: 150 QEYVAINPCLSVERPKRKTEGI-RPWTKEDMQQFKSFWSEGSQ-PRLAFEFLLYSGLRCS 207 E++ +P L ER + + + + +G + R F F Y+GL + Sbjct: 204 NEWLIKDPFLRFERKIVNKDREALELEEIENIKGVKLDKDGQRIVRDVFIFSCYTGLSFA 263 Query: 208 DSCRAGVQHLQNNIFSIKTQKTGTIITVELP---------DGFMKLLAMTPIGKETFFIN 258 D C HL +I K + T ++L+ + Sbjct: 264 DMCLLNNNHLVTDIEGEKWIEMIRHKTANFSGKKFFVLLLPEAIELINRYRNHPMAGYTK 323 Query: 259 NDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-ADAGATAHELMATYGWKT 315 + + + KA A +A V+K + H R AT + G + G + Sbjct: 324 TIFPVFSNQATNRYLKAIAKEAKVDKKLTFHIARHTFATTITLENGVPMETVSGMLGHAS 383 Query: 316 VDQAETYTKGADRI 329 + + Y+K + Sbjct: 384 LRTTQIYSKIKKKK 397 >gi|309702146|emb|CBJ01461.1| phage integrase [Escherichia coli ETEC H10407] Length = 376 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 32/271 (11%), Positives = 76/271 (28%), Gaps = 12/271 (4%) Query: 63 SPRKKPTTLKWLI-SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121 + + + T++ I + + + + G R IT + Sbjct: 86 AVQSRRFTVEQAINDLWLPDLQLYKKSP--QSELSKLNLYVRPFWGKRQLRDITAGELEQ 143 Query: 122 GVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + PS+ + L + + AVR ++ +P V K R + ++ Sbjct: 144 YAAGLREKLRPSTVNRILAILSKICSLAVRAGWITHSPMSHVRYLKENNIRYRTLSATEI 203 Query: 180 QQFKSFWS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 +F + + + LY+G+R + C ++ ++ + T + P Sbjct: 204 PRFIDAATALQTPAADSILLALYTGMRIGEVCTLKWEYWHPDMHQLILPDTKSGHPFTCP 263 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQ-----FSIWFKAKATKAGVN-KSAHGVRKF 292 + + ++ F A ++ H +R+ Sbjct: 264 LAPPAIAVVQCQQDLMLSKTYIFPRLTDNARPLAYPRATFARICRDADIDNLRMHDLRRT 323 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYT 323 AT A ++ Y Sbjct: 324 FATRVLQATGDIAIASHLLNHHSLTATRRYA 354 >gi|271499297|ref|YP_003332322.1| integrase family protein [Dickeya dadantii Ech586] gi|270342852|gb|ACZ75617.1| integrase family protein [Dickeya dadantii Ech586] Length = 363 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 44/339 (12%), Positives = 94/339 (27%), Gaps = 47/339 (13%) Query: 14 ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + GK + Y G+R+R A+ + ++ + +L Sbjct: 4 RKLASGKWLCECYPLGREGKRVR-KQFATKGEALAFERFTMEEIENKPWLG-EKADNRSL 61 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESY---FDQIIRKSGDFDYRKITTKHIRSGVESR-- 126 + +I + SL + + D I G+ R+++ E R Sbjct: 62 REIIDLWF------SLYGRTLADPKRMMAKLDIICTGLGNPKARELSAADFAHYRELRLA 115 Query: 127 ------------KHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRP 173 P + ++ +F + + A NP + K + + Sbjct: 116 GQMTDASGIPLAVVKPRTVNLEQRNLSAVFGTLKKLGHWDAPNPLSGLPTFKIAQQELAF 175 Query: 174 WTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 ++++ +E + P L + L +G R S++ Q + + K Sbjct: 176 LAPNEIKRVLDACAESANPHLLLVTKICLATGARWSEAEGLSGQQVTPYRITYTRTKGKK 235 Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV----NKSAH 287 TV + + + F+ + G+ + H Sbjct: 236 NRTVPISRELYDEIPRKSGKLFSPC-------------RKAFERAINRTGIQLPDGQCTH 282 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 +R A+ G L G + Y A Sbjct: 283 VLRHTFASHFMMNGGNILVLRDILGHADIKMTMIYAHFA 321 >gi|239930698|ref|ZP_04687651.1| integrase [Streptomyces ghanaensis ATCC 14672] gi|291439062|ref|ZP_06578452.1| integrase [Streptomyces ghanaensis ATCC 14672] gi|166078058|gb|ABY81078.1| Int1 [Streptomyces ghanaensis] gi|291341957|gb|EFE68913.1| integrase [Streptomyces ghanaensis ATCC 14672] Length = 376 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 54/355 (15%), Positives = 104/355 (29%), Gaps = 36/355 (10%) Query: 18 HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPK-REYINSPRKKPTTLKWLIS 76 G+ +R ++R +T A ++ + R + P + Sbjct: 19 SGRWQVRYRDPETGQLRPAEKTYATKTDAQVALTHIESDIVRGQWSDPDAGAVNFGEYAT 78 Query: 77 EYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPS---S 132 + + LA +R ES I+ G +TT +R + Sbjct: 79 AWLRD---RKLADRTRERNESVMRLHILPTFGAGSVADVTTARVRGWRGKLLAAGVGEPT 135 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 ++ +R L AV E + NPC + T ++ S + Sbjct: 136 VVKAYQLLRALMNTAVDDELIRRNPCRIKGADRYDVPERPVLTVAEVFA--VADSIAPRY 193 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-----------------ITV 235 RL ++ LR + + + ++ ++ +V Sbjct: 194 RLLVLLAAFTTLRFGELAALRRRDIDQEGLTVTVRRAQAELQDGRLFDKAPKSAAGVRSV 253 Query: 236 ELPDGFMKLLAMTPIGK------ETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287 P + +A F+ ++ + F + AGV H Sbjct: 254 SFPAELLDAVAHHLEHFAAPGRDGHVFVGPQGGQLRRSNFRDDWVKAREAAGVTAELHFH 313 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISS 341 +R T+++ AGA+ ELM G + A Y +DR R + Sbjct: 314 DLRHTGNTLASTAGASTRELMTRMGHSSSRAALIYQHMTSDRDRTIADRLGAMIR 368 >gi|253563520|ref|ZP_04840977.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|251947296|gb|EES87578.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|301162178|emb|CBW21723.1| putative phage integrase protein [Bacteroides fragilis 638R] Length = 330 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 32/264 (12%), Positives = 83/264 (31%), Gaps = 14/264 (5%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESRK 127 + L++ + + + + + + ++++ ITT IR + E + Sbjct: 53 EHLLNSFISAKKIEGCSEKTLTYYRNTIERLLVSL-SLAICHITTTDIRTYLSNYQEEHQ 111 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + + F W ++Y+A +P + + K + + E ++Q Sbjct: 112 SSKVTIDNMRRIFSSFFAWLEDEDYIAKSPVRRIHKVKTDSLVKEVLSDEQLEQ-LRDSC 170 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLA 246 + +FL +G+R + + + + + V L Sbjct: 171 TTKRDLAIIDFLSSTGIRVGELVKLNREDIDFHERQCVVFGKGNKERVVYFNARTKLHLQ 230 Query: 247 MTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299 G+ ++ ++ + + + + K H R+ AT++ D Sbjct: 231 QYLNGRTDDNPALFVSLHSPHTRLTISGVEVRIRKLGHTLSMPKVHPHKFRRTLATMAID 290 Query: 300 AGATAHELMATYGWKTVDQAETYT 323 G ++ G +D Y Sbjct: 291 KGMPIEQVQRLLGHVRIDTTLHYA 314 >gi|170025347|ref|YP_001721852.1| integrase family protein [Yersinia pseudotuberculosis YPIII] gi|169751881|gb|ACA69399.1| integrase family protein [Yersinia pseudotuberculosis YPIII] Length = 384 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 51/378 (13%), Positives = 103/378 (27%), Gaps = 56/378 (14%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 + R+ K F + +G R+R + A T Sbjct: 4 KQRYSKWYCDFVRPNGERVRRCL-GTADKKQAQELFDQLKAEAWRVDKLGEIAEHTFDET 62 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---- 130 + S + + IT I V + Sbjct: 63 CLRWLTEKEHK----RSLDDDRTKIEFFRGHFSGMPISSITEDKIMKAVSRMPNRKHRQI 118 Query: 131 -------------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165 ++ Q L+ +R L + A + + ++ K Sbjct: 119 WESKRDAALMKKKPIPSYVEKQVSQATRSQHLSFIRSLLRAAADEWK-WLAKAPVIKTRK 177 Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225 +++ IR TK++ + E +P F L +GLR S+ + Sbjct: 178 PQSKRIRWLTKDEAVTLINCMPENFRP--VVVFALATGLRRSNILDLEWSQIDMQRKVAW 235 Query: 226 TQKTG----TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF------------ 269 I V L D K+L + + A Sbjct: 236 IHPENAKAGKAIGVALNDMSCKVLREQIGRSSRYVFVHTSAWHRADGTKTAEVRKMRVDD 295 Query: 270 SIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 + ++ ++G+ + H +R A+ AG L GW++++ Y + Sbjct: 296 NTAWRTGLKRSGITDFRFHDLRHTWASWLVQAGVPLSALQEMGGWESIEMVRRYAHLSPN 355 Query: 329 IRLGIKNSRRISSVVDSD 346 +++R+I V+ + Sbjct: 356 H--LTEHARKIDEVMGIN 371 >gi|294625939|ref|ZP_06704551.1| phage-related integrase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292599734|gb|EFF43859.1| phage-related integrase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 399 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 56/354 (15%), Positives = 97/354 (27%), Gaps = 25/354 (7%) Query: 9 PFVTKERTRHGKI----IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64 P + T G+ Y G R+ L E T A + A R + Sbjct: 29 PGFLCKITPAGRKVFMLQYRTNAGERRKPALGQYGELTVEQARVMAQEWLAEVRRGGDPS 88 Query: 65 RKKP-----TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKH 118 K T+K + + +++ ++ D+ II G + + Sbjct: 89 AAKAAARKAQTMKEYCHTFMEDYSKQRNKPSTQRGYQGVIDRCIIPILGRMKVQDVKWPD 148 Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + ++ H P+ A + +R +F A P +D Sbjct: 149 VAALMKKLAHKPAEANRAFGVLRKMFNLAEVWGLRPDGTNPCRHVPMYPPGKETRLIVDD 208 Query: 179 MQQFKSFWSEGSQPR--------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230 E + LA R S+ C + + + Sbjct: 209 ELVRIFRQLEKLEAEGLESYVIPLAIRLQFEFAARRSEICPLEWDWVDLEKRRVVWPDSK 268 Query: 231 TIITVELPDGFMKLL-----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 T + L N+ + + +K AGV Sbjct: 269 TGGISKPMSEEAYRLLSTAPRREGCPYVLPSPNDPNPHLTHGEHYGGWKRMLKVAGVPHV 328 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSR 337 HG+R S T A++G MA G KTV Y D+ +R + Sbjct: 329 GTHGIRHRSTTDIANSGVPTKVGMALTGHKTVAMFMHYVHTEDKPVRDAAELVA 382 >gi|300775803|ref|ZP_07085664.1| integrase [Chryseobacterium gleum ATCC 35910] gi|300505830|gb|EFK36967.1| integrase [Chryseobacterium gleum ATCC 35910] Length = 416 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 41/290 (14%), Positives = 88/290 (30%), Gaps = 28/290 (9%) Query: 65 RKKPTTLKWLISEYRKSAHWG---SLAVN-SRISFESYFDQIIRK------SGDFDYRKI 114 T ++ L VN +R +++ + D + + Sbjct: 107 ESGEMTFFKFYEQFLSDYEKKVNSGLRVNGTRSKYKTLLRHLRNFVLTKYGYSDVSFNDL 166 Query: 115 TTKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170 T + ++ + + T ++ ++ L + A+ ++++A NP + K+ + Sbjct: 167 TPEFVQDFDYYLRDDQSLTHNTIWLYMIGFTTLCRLAMSRKHLAFNPFSEYKNTKKDKDR 226 Query: 171 IRPWTKEDMQ--QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228 E Q F + + F F ++GL SD ++Q+ S + Sbjct: 227 GYLLRNELEQLVTFNCEKKKDELVKDLFVFSCFTGLSYSDMKGLRNSNIQDFFDSNQWII 286 Query: 229 TGTIITVELPDGFMKLLAMTPIGKE---------TFFINNDKQKMNATQFSIWFKAKATK 279 T + + + I K +N + + S + K Sbjct: 287 IRRKKTATSSNVMLLDIPKMIIEKYAGFSKDGKVFPVPSNTVCNDSLKRISQQIECLKEK 346 Query: 280 AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + H R AT+ G L G K + + Y K + Sbjct: 347 ---KVTFHLARHTFATLFLSEGVPLESLSKMLGHKNIATTQIYAKILNEK 393 >gi|223934444|ref|ZP_03626365.1| integrase family protein [bacterium Ellin514] gi|223896907|gb|EEF63347.1| integrase family protein [bacterium Ellin514] Length = 341 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 41/298 (13%), Positives = 85/298 (28%), Gaps = 15/298 (5%) Query: 43 FIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI 102 ++A G + + TL+ + +Y++ + + ++ Y Sbjct: 43 LKDLELAARAGRLTQEAIGYLISGRKLTLQKALEDYQEWMETRGKSPRTIMNNVHYIRSW 102 Query: 103 --IRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158 + IT KHI + +R + +S L ++R F + + + +P Sbjct: 103 ITAAQVEALPPAAITEKHISDWINNRESQTKANSRTIMLAAIRSFFFFIAGKGWTPNDPS 162 Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWS-----EGSQPRLAFEFLLYSGLRCSDSCRAG 213 V + ++ T + + R A + GLR D C+ Sbjct: 163 KLVSVNYKILSHVQKETTVKRVFTAAEYDGLVKATDGFWRFAIQASRELGLRLGDICQLE 222 Query: 214 VQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM-----TPIGKETFFINNDKQKMNATQ 268 + + + A + Sbjct: 223 WDCFRQPGYITVWTDKRDKRVSLKMSDGLAQAATLQPVAHARYVFPEERDIINDPTRRAY 282 Query: 269 FSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 S+ F + G+ KS H +R AT S G + ++ + G + E Y Sbjct: 283 LSVSFTRICARLGLKGKSFHCLRHTFATESNAEGRSLTQIASDMGHSSTRTTEGYVHK 340 >gi|24373721|ref|NP_717764.1| phage integrase family site specific recombinase [Shewanella oneidensis MR-1] gi|24373766|ref|NP_717809.1| phage integrase family site specific recombinase [Shewanella oneidensis MR-1] gi|24348094|gb|AAN55208.1|AE015659_2 site-specific recombinase, phage integrase family [Shewanella oneidensis MR-1] gi|24348149|gb|AAN55253.1|AE015663_3 site-specific recombinase, phage integrase family [Shewanella oneidensis MR-1] Length = 287 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 34/267 (12%), Positives = 77/267 (28%), Gaps = 21/267 (7%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRK 127 L+ ++ + +R ++ Q+ + + IT + + + Sbjct: 2 SSLLQQFHDEISLRGYSARTRNAYLYAITQL-QHYANQPLDNITDEQLTAYFRYLNLEWH 60 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 H+ ++ L + ++ +++++ + + Sbjct: 61 HSRATLKLQLNGIHFFYEHVLKRDFTIQLSLPKR------PHKLPQLLSCQDIAALLYHC 114 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLL 245 + + R GLR S+ V + +K + V L + LL Sbjct: 115 QNLKQRAMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGKGACDRWVILSPTLLILL 174 Query: 246 AMTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297 ++ ++ + F A A + S H +R AT Sbjct: 175 RQYWQAYHPVEWLFASTYHDVVYPLHESTFRKALAKAARLASITKPCSPHSLRHAYATHQ 234 Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324 AG H+L A G ++ E Y Sbjct: 235 LQAGMPLHQLQAQLGHHSIKSTERYLH 261 >gi|28377499|ref|NP_784391.1| prophage Lp1 protein 1, integrase [Lactobacillus plantarum WCFS1] gi|28270331|emb|CAD63232.1| prophage Lp1 protein 1, integrase [Lactobacillus plantarum WCFS1] Length = 400 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 46/363 (12%), Positives = 108/363 (29%), Gaps = 47/363 (12%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKR-----EYINS 63 P + + T+ GK Y R+ + + + A I + Sbjct: 12 PGIYEYETKRGKK-YGIRRSYTDINHKYRTWSKSGFITWRDADIELKKFEVTLGTGQITA 70 Query: 64 PRKKPTTLKWLISEYRKSAHWGSL-AVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRS 121 TL+ + K L + ++Y++ Q+ G+ +IT + ++ Sbjct: 71 SISDTITLQAYFDKVLKRNIDLKLWRPATITQKKNYWNNQLKPVFGNQKINEITRQSYQN 130 Query: 122 GVESRKHTPSSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 ++ + + + M++L AVR + + N + K+ + T++ Sbjct: 131 FIDQMIKDGYAKNTIITTNSVMQILMNDAVRNDVIVKNKLSGISIDGGKSPSSKTITEKQ 190 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYS---------GLRCSDSCRAGVQHLQNNIFSIKTQKT 229 Q + L + GL+ S + + K +T Sbjct: 191 YNQLMTIAPSVLSKYQYCMLALLTLGERREELMGLQFSSFKFSQWNDEEVCAIQFKKGRT 250 Query: 230 GTI------------ITVELPDGFMKLLAMTPIGKETFFINNDK---------------Q 262 T+ + + + + + + Sbjct: 251 NAEPEGGDLKNNSSYRTIYVRGEMLNICHYAITYSQNIYSKTHRNINDESFLFVNEKTGM 310 Query: 263 KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 M Q + G++ + H R + AT++ G A ++M G ++ ++Y Sbjct: 311 PMGVQQANKVLNKVGEATGIHITPHIFRHYFATMALTNGQVATDVMHWLGHSSLQMTQSY 370 Query: 323 TKG 325 T+ Sbjct: 371 TRE 373 >gi|319762347|ref|YP_004126284.1| integrase family protein [Alicycliphilus denitrificans BC] gi|317116908|gb|ADU99396.1| integrase family protein [Alicycliphilus denitrificans BC] Length = 337 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 45/333 (13%), Positives = 93/333 (27%), Gaps = 24/333 (7%) Query: 14 ERTRHGKIIYYF-RKGHGRRIR----LPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 R+ + + F R G+R R LP + + L + K Sbjct: 5 YDKRNKRWRFEFDRYIAGQRQRTSRLLPKGYTRAEADKFD--LEETKRLHAIATGVSKPE 62 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVES 125 ++ + Y K A+ S + + + + + Sbjct: 63 PLIEDAVLLYLKHHAP---ALKSFENIRRELQACFEAYAGKPFSALPAVALNYKPKDADG 119 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + + ++A L +R ++A + + S + + Sbjct: 120 KALSAATARNRLAYIRAACRYAWKHHGMGDANPASSLPMPKVRNERHVYLGRAEFLAICR 179 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDS-CRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 + R YSG+R ++ A I + + K V + + Sbjct: 180 CIKPGPSRACIRIAFYSGMRAAEPGMAAVSSDGSAFILAPEDTKNHLPRVVPVHPRIAHI 239 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGAT 303 L + + S FKA A AG+ + H +R +A+ +AG Sbjct: 240 LRNPALWPP---------RRTKWTVSKEFKAGARLAGMGHARLHDLRHSTASEMINAGVD 290 Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 + + G K+ Y+ A + Sbjct: 291 LYTVGGVLGHKSAVSTRRYSHLATKTLAAAVAL 323 >gi|225574741|ref|ZP_03783351.1| hypothetical protein RUMHYD_02818 [Blautia hydrogenotrophica DSM 10507] gi|225038032|gb|EEG48278.1| hypothetical protein RUMHYD_02818 [Blautia hydrogenotrophica DSM 10507] Length = 408 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 49/406 (12%), Positives = 101/406 (24%), Gaps = 78/406 (19%) Query: 13 KERTRHGKIIYYFR--KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 + R R Y F K G+R + T A + + + Sbjct: 5 RTRKRGKTWEYSFEGAKIDGKRKPISKGGFRTKADALNAGIKAKAEYDSGGRVFTPSAIS 64 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT 129 L + + K L ++ +++++ I G + + I+ V+ H+ Sbjct: 65 LSDYLDYWYKRY-ASKLTYKTQDTYKNHIRLHIKPYLGSYRISSLEPDVIQEWVDEVLHS 123 Query: 130 -----PSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKR------KTEGIRPWTKE 177 S L + + Y+ NPC+ V+ P K +KE Sbjct: 124 QKKLARQSIANILGVLSGALNYAVQPLRYIRSNPCIYVKIPDIKVDKKAKDHTDFVLSKE 183 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----- 232 D +Q K ++S + F L G + ++ Sbjct: 184 DWKQIKEYFSSAPESHSYLFFPLIVGYHTGERIGEIFGTDLLADYNPVRHTLSVSHQLQK 243 Query: 233 ---------------------------------ITVELPDGFMKLLAMTPIGKETFFINN 259 + + T + + + Sbjct: 244 QKGILLYTNPKYDSFRINKIDSLLEAEIQKELKRRECDRLRYREYYKNTYLLPDNTIVQL 303 Query: 260 DKQKMNATQFSIWF--------------------KAKATKAGVN-KSAHGVRKFSATISA 298 + + + K G+ H +R TI A Sbjct: 304 PADSQVPDSYQEIWPLGVKQDGTILTTEHAKHMSRIVKDKVGIELFHPHCLRHTHGTILA 363 Query: 299 DAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVV 343 +GA+ +M G K + Y + + + + + Sbjct: 364 QSGASPKTIMERLGHKNIKVTMERY--VFNTEEMQNQAVSLFENAI 407 >gi|319945806|ref|ZP_08020057.1| phage integrase family site-specific recombinase [Streptococcus australis ATCC 700641] gi|319748166|gb|EFW00409.1| phage integrase family site-specific recombinase [Streptococcus australis ATCC 700641] Length = 377 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 50/373 (13%), Positives = 113/373 (30%), Gaps = 54/373 (14%) Query: 11 VTKERTRHGKIIYYFRKG----HGRRIRLPYPHESTFIPAYMSA--LTGSTPKREYINSP 64 +T +T+ GK G +RIR+ + A + K + + Sbjct: 1 MTIRKTKSGKWTVDVSNGFHPVTQKRIRIIRKGLKSKKEALELEQHIRVVELKEKQFDFV 60 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 L + K+ S R ++E I + + K+T HI E Sbjct: 61 VTTDMLFDLLEEDDLKNGRKISYTSTQRNNYER---HIKPYFKNTNLNKLTYDHIFEFRE 117 Query: 125 SRKHTP-----------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 K P ++ + L ++ +F +R+ + NP ++ + + I+ Sbjct: 118 YLKTKPKKQNENEVLSYNTINKVLILLKKIFDTGIRKSLIDKNPVKNLRKLPIRKPDIKF 177 Query: 174 WTKEDMQQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAGVQ----------------H 216 W+ E+ +F+ + L F ++G+R + Sbjct: 178 WSIEEFTRFRELIRDDEISYDLFFIIAFFTGMRMGEILALNWNDINLLTNTIYVTKTVYF 237 Query: 217 LQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET------------FFINNDKQKM 264 + N + T+ + + ++L + ++ I + + Sbjct: 238 VNNTSYINTTKTRSGTRNITINQKLAEMLIDWKVKQKEKLEEFTKNTEELQIIQSTPITI 297 Query: 265 NATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ET 321 FK + H +R A++ + G + G ++ +T Sbjct: 298 TKNMIDKKFKQILERDKDLKKIRIHDLRHSHASLLINQGEDYLVVKERLGHASITTTIDT 357 Query: 322 YTKG--ADRIRLG 332 Y+ + + L Sbjct: 358 YSHLYPSKQKTLA 370 >gi|300856340|ref|YP_003781324.1| putative phage-like integrase [Clostridium ljungdahlii DSM 13528] gi|300436455|gb|ADK16222.1| predicted phage-related integrase [Clostridium ljungdahlii DSM 13528] Length = 393 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 50/390 (12%), Positives = 97/390 (24%), Gaps = 71/390 (18%) Query: 1 MTPSLRLPPFVTKERTRHGKIIYY--FRKG---HGRRIRLPYPHESTFIPAYMSALTGST 55 M T +GK Y + G G+RIR + A L Sbjct: 1 MATKTNF--------TSNGKKYYRINYDIGMDADGKRIR-KQFVGKSRKEAEKKKLDYIN 51 Query: 56 PKREYINSPRK--KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDY 111 + + TLK + + G++ + +E + I G Sbjct: 52 KMNAGLKDAKNMWLAQTLKSWL--FEVVKMSGNIKPTTFARYEGLYRNYIENSPIGCMSL 109 Query: 112 RKITTKHIRSGVESRKHTPSS---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168 K+ + I+ S ++ +AV Y+ NPC + K Sbjct: 110 DKLESIQIQRYYNKLFRQGKSSNQINYVNKFLKQFLNYAVDCGYILKNPCSGKKVAIPKE 169 Query: 169 E-----GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--I 221 + K +E S+ + F L +G+R + + Sbjct: 170 NSDKVSERHIPVFNNEDLTKIIKAENSKIKYIALFSLSTGMRRGEIIGLKENDIDYKLKE 229 Query: 222 FSIKTQKTGTIITVELPDGFMKLLA----------------------------------- 246 I+ T I + + + Sbjct: 230 IHIRRTVATTTIFDDNNKRSKQTIVQEPKSKNSKRTIPLPASLVEIIKASIKIKKSEKLK 289 Query: 247 ----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAG 301 + F++ +NA + + K H +R AT + Sbjct: 290 AGSSYCKDNLDYIFLSEQGNLINAGNLDKTWSKFLRSLNIPHKKFHALRHTYATKQFENN 349 Query: 302 ATAHELMATYGWKTVDQAE-TYTKGADRIR 330 + G +++ YT + + Sbjct: 350 IPLKTISMLLGHSSIEITANIYTHVLKKEK 379 >gi|224823635|ref|ZP_03696744.1| integrase family protein [Lutiella nitroferrum 2002] gi|224604090|gb|EEG10264.1| integrase family protein [Lutiella nitroferrum 2002] Length = 433 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 37/339 (10%), Positives = 89/339 (26%), Gaps = 37/339 (10%) Query: 18 HGKIIYYFRKGHGRRIRLPYP---HESTFIPAYMSALTGSTPKREYINSPRKKPTT---- 70 GK R G ++ + + + + + Sbjct: 8 KGKWRATVRIKQGGKLVFHKSMTHDTKRLAEQWALDVEAKARTETGLAELLAREGSRGVL 67 Query: 71 LKWLISEYRKSAHWGSLAV--NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK- 127 ++ LI Y + L ++ + + GD +T + R+ Sbjct: 68 VRDLIGRYIQYVG--KLKPLGATKSAVLNTLA--ASDLGDNPVTAVTAGVLLDYCNKRRE 123 Query: 128 ---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR-----------KTEGIRP 173 ++ ++ Q+ +R +F A + ++ E + + Sbjct: 124 KYGNSAATIAQYFGYLRQVFDLAKPVWGIGVSAAPFDEVRPVLLKLGLIGQGSERDRRLV 183 Query: 174 WTKEDMQQFKSFWSEGSQPR---LAFEFLLYSGL--RCSDSCRAGVQHLQNNIFSIKTQK 228 + + ++ R +A F + R + + ++ + Sbjct: 184 GDEYARLLKWFENYDATRARELRMAPVFRYAVAMAARRGEIVGILRSDVDRQARTVVVRN 243 Query: 229 TGTIITVELPDGFMKLLAMTPIGKETF---FINNDKQKMNATQFSIWFKAKATKAGV-NK 284 D + LL E + S F+ G+ + Sbjct: 244 RKDPRNKIGNDQVLPLLGEAWGIVEAQLASHDDLRVFPYTEISISTCFQRACEVLGIEDL 303 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 H +R + +AG + ++ G KT + YT Sbjct: 304 HFHDLRHEGTSRLFEAGYSIEQVALVTGHKTWNMLRRYT 342 >gi|321157036|emb|CBW39024.1| Integrase [Streptococcus phage 040922] Length = 375 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 44/375 (11%), Positives = 120/375 (32%), Gaps = 56/375 (14%) Query: 18 HGKIIYYFRKGH---GRRIRLPYPHESTFIPAY-MSALTGSTPKREYINSPRKKPTTLKW 73 +GK ++ R + ++ E A +A+ + +++ + + T + Sbjct: 8 NGKYKFFERYKDPYTEKLKKVSVTMEKKTPQARNQAAILLQEKINKKLSTKQVESITFEE 67 Query: 74 LISEYRKSAHWGSLAVNSR---ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 + + + KS ++ +++ S + Q+I D + + ++ +E + Sbjct: 68 IYNLFYKSWS-QTVKESTKHNCKSIDKIMKQVIPS--DTLLANLDRRFLQEAIEKIIESN 124 Query: 131 S--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-------PWTKEDMQ- 180 +A + +R +F +AV+ Y+ N P++ T ++++ Sbjct: 125 GYITAKKVRHRLRGIFNYAVQYSYIENNEVDYTTIPQKPKTLEELEKKRNNFLTMQEIKA 184 Query: 181 --QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------ 232 + + L +G+R + ++++ I+ Sbjct: 185 LVDVLNRREYHQKYADMVLVLALTGMRYGELTALQLKNIDLENNKIEITGNFDSVNKIKT 244 Query: 233 --------ITVELPDGFMKLLAMTPIG-----------KETFFINNDKQKMNATQFSIWF 273 T+++ + ++ + + F Q F Sbjct: 245 LPKTTNSIRTIKVSESVIEAIQRQIVRLSERFQPLSSDDYIFCFEKWNQPTTIACFIQIL 304 Query: 274 KAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330 K +A + K S+H R + A++G +M G E Y+ + Sbjct: 305 KKYGKQAKIEKNLSSHIFRHSHISFLAESGLPIKSIMDRVGHSNAKMTLEIYSHTTE--- 361 Query: 331 LGIKNSRRISSVVDS 345 ++ + +D+ Sbjct: 362 ---DMEDKLVNKLDT 373 >gi|218263862|ref|ZP_03477831.1| hypothetical protein PRABACTJOHN_03521 [Parabacteroides johnsonii DSM 18315] gi|218222461|gb|EEC95111.1| hypothetical protein PRABACTJOHN_03521 [Parabacteroides johnsonii DSM 18315] Length = 386 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 50/367 (13%), Positives = 107/367 (29%), Gaps = 42/367 (11%) Query: 6 RLPPFVTKERTRHGKIIYY---FRKGHGRRIRLPY-----PHESTFIPAYMSALTGSTPK 57 + P + +++ +G + + +R G + L + T K Sbjct: 9 KEPVKLREKKLSNGNVSLFLDIYRNGKRHKEYLKLYLIDAKTPLEKEQNRQTLATAQAIK 68 Query: 58 REYINSPRKKPTTLKW-------LISEYRKSAHWGSLAVNSRISF---ESYFDQIIRKSG 107 + + + + + YRK S+ ++ S + Sbjct: 69 SKRLIELQNGEYSFTHQFKENTPFLEYYRKMVEERRKNPESKGNWGNWRSCLRYLEIYCD 128 Query: 108 DFD-YRKITTKHIRSGVESRKH------------------TPSSAIQFLTS---MRVLFK 145 + +R +T + + E +H S ++ +R Sbjct: 129 EKTTFRDVTPEFVMGFKEFLEHVEKDTHKRVGPRRERDTFQGLSQNSKVSYFNKLRACIN 188 Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205 A + + INP +E K T ++++Q + + AF F +G+R Sbjct: 189 QAYDERVIPINPLRGIEGFKAAEVKRDYLTLDEVRQLAATPCRYPILKRAFLFSCLTGIR 248 Query: 206 CSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN 265 SD + +Q + + + Sbjct: 249 KSDIQKLTWGEVQKFGEYTRIVFKQKKTGGQEYLDITPQAEKYLGERGNPDDLVFTGFTY 308 Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 S+ + + AG+NK + H R A + D GA + + G K + + Y Sbjct: 309 GAWTSLELQRWSLAAGMNKNLTFHCGRHTFAILMLDLGADIYTVSKLLGHKELATTQIYA 368 Query: 324 KGADRIR 330 K D+ + Sbjct: 369 KVLDKNK 375 >gi|300813798|ref|ZP_07094105.1| site-specific recombinase, phage integrase family [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512088|gb|EFK39281.1| site-specific recombinase, phage integrase family [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 411 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 46/415 (11%), Positives = 101/415 (24%), Gaps = 80/415 (19%) Query: 1 MTPSLRLPPFVT----KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTP 56 M + V + + +G + ++ GRR + + L + Sbjct: 1 MVKRRKDSKGVVLKDGEYQRSNGTYEFKWQDKIGRRKSIYAKTLKELREKELDILRNTID 60 Query: 57 KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKIT 115 S T K + L N+ ++ + Q + G I Sbjct: 61 GINNEGSSLSVNDTFK------LWTKVKRGLKDNTFKNYIYMYQQFVEPTFGRIKLSDIK 114 Query: 116 TKHIRSGVESRKHT----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLS--------VER 163 +RS K S+ T + + + AV EY+ NP + Sbjct: 115 RSDVRSFYNRLKEDQGLMVSTIDCVHTVLHQVLELAVDDEYIRFNPSDNALKELKVAYRN 174 Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL------ 217 K + + + +++ S E + F +L++G+R + + Sbjct: 175 ESPKKKAMTIEEQVLFEEYLSNSDEYKKWYPIFIVMLWTGMRVGEVTGLQWDDIDFDNGL 234 Query: 218 ----------------QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261 N + ++ + M ++TF I Sbjct: 235 ISVNRTLVYYSKGKGLNNRYAINTPKTESGKRSIPMVQKVKDAFLMERELQKTFGIECCD 294 Query: 262 ---------------QKMNATQFSIWFKAKATKAGV-----------------NKSAHGV 289 + N + + + + S H Sbjct: 295 SIDGFKDFVFLNRFGKVHNNGTLNKALRRIVRDCNLSIMDKNKSNSNDILLVPHLSNHIF 354 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVV 343 R T + + + G + Y + + I+ + Sbjct: 355 RHTFTTRLNEQNINTKAMQSILGHSDISTTMDIYVDATEDFK--IEQMGEFEKAM 407 >gi|125625033|ref|YP_001033516.1| phage integrase [Lactococcus lactis subsp. cremoris MG1363] gi|124493841|emb|CAL98834.1| phage integrase [Lactococcus lactis subsp. cremoris MG1363] gi|300071839|gb|ADJ61239.1| phage integrase [Lactococcus lactis subsp. cremoris NZ9000] Length = 393 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 49/396 (12%), Positives = 117/396 (29%), Gaps = 65/396 (16%) Query: 10 FVTKERTRHGKIIYY------FRKGHGRRIRLPYPHESTFI--PAYMSALTGSTPKREYI 61 + + + G +Y G+++R +S + A+ I Sbjct: 2 NIKEYTKKDGTKVYRTNVYLGVDNLTGKQVRTSVTAKSKKMCETKAHQAINDFINNGSTI 61 Query: 62 NSPRKKPTTLKWLISEYRKSAHWGSLAVNSR---ISFESYFDQIIRKSGDFDYRKITTKH 118 + + L + +S + NS ++ + I+ G + KIT Sbjct: 62 AREKVVFDNFEALALSWFESYKLT-VKENSISVADNYLR--NYILPPIGSYKLSKITPML 118 Query: 119 IRSGVESRKHTPSSA---------------IQFLTSMRVLFKWAVRQEYVAINPCLSVER 163 ++ V + ++A L ++ + + ++ + N + V Sbjct: 119 LQELVNKWANNANTAEIINGKRERGKCKDYKLLLNFIKRILDYGMQLGAIEDNSAIKVFP 178 Query: 164 PKRKTEGIRPWTKED---------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214 PK KT ++ D ++ + + ++ LL +GLR ++ Sbjct: 179 PKLKTRTVKKIKYFDNEELKQFLLYLDTLEPSTDNRKSKTLYKLLLATGLRVGEAMALSW 238 Query: 215 QHLQNNIFS---------------IKTQKTGTIITVELPDGFMKLLAMTPIG-------- 251 + N + + +V L + ++ L Sbjct: 239 SDIDFNNHYLSVSKTLIQQSNLIQDSAKTKESNRSVFLDNDTLESLKEWRKYQNDGAISL 298 Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMAT 310 ++ + ++ + AGV HG R A++ + E+ Sbjct: 299 HDSLVFSYHQKMRSYEIERQKLVRHFKNAGVPNIGFHGFRHTHASLLMNNDVNPKEIQRR 358 Query: 311 YGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVVDS 345 G TY+ A + + + SS++ + Sbjct: 359 LGHADYAITMNTYSHLAKSKE--KETAEKFSSILKA 392 >gi|15925018|ref|NP_372552.1| integrase [Staphylococcus aureus subsp. aureus Mu50] gi|15927603|ref|NP_375136.1| hypothetical protein SA1835 [Staphylococcus aureus subsp. aureus N315] gi|156980344|ref|YP_001442603.1| hypothetical protein SAHV_2013 [Staphylococcus aureus subsp. aureus Mu3] gi|255006817|ref|ZP_05145418.2| hypothetical protein SauraM_10125 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|13701822|dbj|BAB43115.1| int [Staphylococcus aureus subsp. aureus N315] gi|14247801|dbj|BAB58190.1| similar to integrase [Staphylococcus aureus subsp. aureus Mu50] gi|156722479|dbj|BAF78896.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] Length = 390 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 51/387 (13%), Positives = 106/387 (27%), Gaps = 56/387 (14%) Query: 14 ERTRHGKIIYYFRKGH----GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 R Y G G+ + A A R + + Sbjct: 4 YEKRGNTWRYRISLGKDAETGKYKYISNSGFKRKSDAKHHAEMVERQLRN-GDYIAPSTS 62 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--K 127 T K + ++ S + + V+S + E I + + + I + V + Sbjct: 63 TFKQVADDWI-SQYANEVKVSSVRAREKAIHHAIERFKNKPIQTIKKHDYQRFVNDISIQ 121 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 ++ + +TS ++FK+A + + I P ++RPK+K E ++F Sbjct: 122 YSKNYVDSIVTSTNMIFKYAYDMKLIRILPSEGIKRPKKKVSVEELEDTEIHKKFLEKDE 181 Query: 188 EGSQPRLAFEFL------------LYSGLRCSDSCRAGVQHLQNNIFSI----------- 224 +A Y+G+R + + +I Sbjct: 182 LFQFLEIAKNHHSPQNSFEVFYTLAYTGMRAGELLALKWSDIDFENNTINITKTYYNPNN 241 Query: 225 --------------------KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264 ++ D + F + + + Sbjct: 242 NKKQYQILTPKTESSIGKISVDPHVIKLLKNYKVDVQDTWKNELYVDNNFVFTDVNGYPL 301 Query: 265 NATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE- 320 + +W KA K + S H R + +AG E+ K ++ Sbjct: 302 VIKKLQLWIKAILKKTNITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMN 361 Query: 321 TYTKGADR-IRLGIKNSRRISSVVDSD 346 Y K + + + ++ V D Sbjct: 362 IYAKITNSYKKDASQKFSKLMENVSKD 388 >gi|289628758|ref|ZP_06461712.1| phage integrase family site specific recombinase [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330870488|gb|EGH05197.1| phage integrase family site specific recombinase [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 320 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 39/271 (14%), Positives = 84/271 (30%), Gaps = 31/271 (11%) Query: 89 VNSRISFESYFDQIIRKSG---DFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRV 142 +R ++++ G D+R++T H+ + + + ++ + L ++ Sbjct: 39 PRTRRAYQNDLTDFSAFIGLASADDFRQVTRSHVLAWRANLEQRGLAGATIRRKLAALAS 98 Query: 143 LFKWAVRQEYV---AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLA 195 LF + + + + + + E G + R Sbjct: 99 LFDHLLESNAIAGGNPVHGVKRPKIESNEGKTPALGDHQAKALLEAPDESTLKGLRDRAM 158 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---------------IITVELPDG 240 LLY GLR ++ + V +Q + G I L Sbjct: 159 LAVLLYHGLRREEAAQLQVSDIQERRGIQHLKIHGKGGKVRYLPLHPVAAGRIHWYLERS 218 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATIS 297 L + + ++A +A KAG+ HG+R +AT + Sbjct: 219 GHHLGDKKVPLFISLRGKSTGASISANGIYTVVEAYTKKAGIEVAGLGVHGLRATAATNA 278 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADR 328 + A ++ A G + + Y + +R Sbjct: 279 LEHEADIAKVQAWLGHANISTTKIYDRRENR 309 >gi|327184452|gb|AEA32897.1| putative integrase [Lactobacillus amylovorus GRL 1118] Length = 326 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 37/282 (13%), Positives = 80/282 (28%), Gaps = 28/282 (9%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT- 129 L+ L ++ N+ ++ Q ++ +R + +++ Sbjct: 29 LEDLFQQFIIFIDAT---PNTVRTYRGSLKQWFLYLRQNQIGHPDSETVRQYRQKLQNSG 85 Query: 130 --PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 P++ ++ +++ F+W + K T +Q Sbjct: 86 KKPTTVKNYIIAVKRFFEWTEEAGFYPNIAKYIKSGHLSKNFKKDYLTGSQARQILDKID 145 Query: 188 E----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---------IIT 234 G + +L GLR + RA + ++ G + Sbjct: 146 RSTIKGKRDYAMLVTMLTMGLRTIEVSRADIDDIRTKGNMTVLYVQGKGHEEKDDLIRMP 205 Query: 235 VELPDGFMKLLAMTPIG------KETFFINNDKQKMNATQFSIWFKAKATKAGVN---KS 285 + L++ + +N +M K AG + + Sbjct: 206 QHVESAIRDYLSVRKANDLSKPLFVSTSNHNANGRMTTRSIRRIVKTAFISAGYDSPRLT 265 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 AH R +AT+S GAT + + + E Y D Sbjct: 266 AHSTRHTAATLSLLNGATLQQTQELLRHRNIGTTEIYAHNID 307 >gi|331697265|ref|YP_004333504.1| integrase family protein [Pseudonocardia dioxanivorans CB1190] gi|326951954|gb|AEA25651.1| integrase family protein [Pseudonocardia dioxanivorans CB1190] Length = 573 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 45/306 (14%), Positives = 93/306 (30%), Gaps = 34/306 (11%) Query: 52 TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-----RKS 106 + E+ P TT++ + + +L + + E + Sbjct: 163 RADVRELEWARVPTAIATTMRDYLQQ-----ITTTLRPGTVKNAELTLREFALLVTAEDP 217 Query: 107 GDFDYRKITTKHIRSGVESRKHTPS---------SAIQFLTSMRVLFKWAVRQE---YVA 154 + KHI P+ + L+ +R F+ + A Sbjct: 218 ETRCVANLRRKHIERYKTWLLERPAARGGPLHRHTVRDRLSKLRGFFRRLDEWDTEDRPA 277 Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRA 212 + P R + + P RLA E L +G+R S+ Sbjct: 278 RQLVFDSDFPIADEPLPRFLDDAAAAKLLAAARNDPDPFARLAIEILARTGMRRSEMLGL 337 Query: 213 GVQHLQN----NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF-----INNDKQK 263 + + + K T V L L+ + + + Sbjct: 338 TIDAVVQIGSAYWLRVPVGKMHTDRYVPLHPQLKALIDDWLARRPEGLRSDLLFTDHGRP 397 Query: 264 MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 +NA++ + A +AG+ + + H +R AT + + G + + A G +++ Y Sbjct: 398 VNASRIEAAVRNAADRAGLGRVTPHQLRHTLATQAINRGMSLEAIAALLGHRSLSMTRVY 457 Query: 323 TKGADR 328 + A+R Sbjct: 458 ARIANR 463 >gi|309810139|ref|ZP_07703985.1| phage integrase, N-terminal SAM domain protein [Lactobacillus iners SPIN 2503V10-D] gi|308169638|gb|EFO71685.1| phage integrase, N-terminal SAM domain protein [Lactobacillus iners SPIN 2503V10-D] Length = 326 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 37/264 (14%), Positives = 84/264 (31%), Gaps = 14/264 (5%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----K 127 I+ + + + S +ES ++ K G D R ITT+ IR + + K Sbjct: 49 ADYIALFLAAKKIEGRSEKSLKYYESTILKMTEKVG-KDARYITTEDIREYLSNYQLNHK 107 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + + + F W ++Y+ +P + + K ++ E+++ + + Sbjct: 108 SSKVTIDNIRRILSSFFSWLEDEDYILKSPVRRIHKVKTGQSIKETYSDEELEIMRDSCT 167 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLA 246 + + + L +G+R + + + K V L Sbjct: 168 K-IRDLAIIDMLASTGMRVGEMVLLNRDDVNFEERECMVFGKGDKERIVYFDARTKLHLE 226 Query: 247 MTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISAD 299 + + +++ + + G+ H R+ AT + D Sbjct: 227 KYLDSRTDNNSALFTSLSAPHERLGIAGIEARLRKLGGELGIYKVHPHKFRRTLATKAID 286 Query: 300 AGATAHELMATYGWKTVDQAETYT 323 G +L G + +D Y Sbjct: 287 KGMPIEQLQKLLGHQRIDTTLQYA 310 >gi|224370500|ref|YP_002604664.1| Phage integrase/recombinase family protein [Desulfobacterium autotrophicum HRM2] gi|223693217|gb|ACN16500.1| Phage integrase/recombinase family protein [Desulfobacterium autotrophicum HRM2] Length = 301 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 37/282 (13%), Positives = 84/282 (29%), Gaps = 31/282 (10%) Query: 88 AVNSRISFESYFDQIIRKSGDFD---YRKITTKHIRSGV---ESRKHTPSSAIQFLTSMR 141 + NS +++ + G R IT H+ + + + + + L+++ Sbjct: 19 SDNSVDTYDRAIRTFLDFLGISSPEELRTITHGHVIAFKKFLQDQGRSARTINNRLSAIS 78 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRK--TEGIRPWTKEDMQQFKSFWSE----GSQPRLA 195 LF + Q+ V IN V+R + +++ + G + + Sbjct: 79 SLFNHLIDQQVVKINVAQGVKRMPVNASRVEAKVLAPVEVRNLLNSPDVSKLQGLRDKAI 138 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--IITVELPDGFMKLLAMTPIGKE 253 L ++G R S+ C V+ + +++ + + Sbjct: 139 LSTLFFTGCRVSEVCSLKVRDFYEEQGFFVLDFWVKGGKRNRMAINQELQITLDQYLTET 198 Query: 254 TFFINN----------------DKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATI 296 + K+K++ F A G+ + H R T Sbjct: 199 GHGPDQASFLFLPVKSGYKALDPKRKLSRRTIDHLFNKYANTIGIAGITPHSARATFITQ 258 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338 + + + T G + + Y K + R + R Sbjct: 259 ALENNCPIEAVQKTVGHAQIKTTQMYDKRTAKYRESASFAVR 300 >gi|50122330|ref|YP_051497.1| site-specific tyrosine recombinase XerC [Pectobacterium atrosepticum SCRI1043] gi|50122339|ref|YP_051506.1| site-specific tyrosine recombinase XerC [Pectobacterium atrosepticum SCRI1043] gi|49612856|emb|CAG76306.1| probable integrase/recombinase protein [Pectobacterium atrosepticum SCRI1043] gi|49612865|emb|CAG76315.1| probable integrase/recombinase [Pectobacterium atrosepticum SCRI1043] Length = 344 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 44/291 (15%), Positives = 94/291 (32%), Gaps = 34/291 (11%) Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVES 125 TL+ + Y + + + + ++ + G +++ + + Sbjct: 19 QTLRQYTTAYLEHLTATNHSPRTVEAYSERLRPFVTWCEERGLTQAAQVSLSVLEAYQRH 78 Query: 126 RKH----------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW- 174 + L+++R LF+W +++ ++ NP + PK + Sbjct: 79 LHGYRKADGKPLAQGGQLNR-LSAIRGLFRWLLQRHHILYNPAEQITLPKAEKRLPAQIL 137 Query: 175 ----TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230 T+ M+ + G + R E L +GLR S+ + + + ++ Sbjct: 138 SEEETEAVMEAQDTDTLTGLRNRAVLEMLWSTGLRRSELSGLMLADVDVGRGVLVVRQGK 197 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT------------ 278 +P G L+ + K +IW K A Sbjct: 198 GNKDRVVPVGLRALVWVQRYLDAVRPRLTTKHDSGYLFVTIWGKRLARSTLTILAGRAIR 257 Query: 279 -KAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 A + K+ H R AT + GA + A G + ++ + YT+ A Sbjct: 258 DDAHLKKAGACHVFRHSMATQMLERGADTRHIQAILGHEKLETTQIYTRVA 308 >gi|261250897|ref|ZP_05943471.1| integron integrase IntI4 [Vibrio orientalis CIP 102891] gi|260937770|gb|EEX93758.1| integron integrase IntI4 [Vibrio orientalis CIP 102891] Length = 320 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 35/301 (11%), Positives = 85/301 (28%), Gaps = 53/301 (17%) Query: 79 RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138 ++ A + ++ ++ + + ++ + + + A + Sbjct: 10 KEHMRARHYATKTIDAYINWISRFVTFHHMAHPSRLDERSVEEFLTHLALHDKVAAKTQA 69 Query: 139 -SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197 ++ + + + ++ + TK + +QF + +L Sbjct: 70 LALNAINFLYRDFYRTPLENDMKFQKSLLDRKLPVVLTKHETRQFLKH--IDPRYKLHIM 127 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK----------------------------- 228 L SGLR ++ R V + + +++ + Sbjct: 128 LLYGSGLRVMEAVRLRVHDIDYDYSAVRIWQGKGGKNRVVTLAKELVPMLNEQQALAQRY 187 Query: 229 -------------------TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269 EL + L + + + +NA Sbjct: 188 YKKDMNTPGYAGVWLNQSLQKKYRGAELEFKWHYLFPSNKLSTDPETGLVRRHHINAVAL 247 Query: 270 SIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 K A +AG++K + H +R AT ++GA + G V + YT + Sbjct: 248 QRAVKRTAKEAGIDKHVTCHTLRHSFATHLLESGADIRTVQEQLGHSDVRTTQIYTHVLE 307 Query: 328 R 328 R Sbjct: 308 R 308 >gi|257466156|ref|ZP_05630467.1| putative integrase [Fusobacterium gonidiaformans ATCC 25563] gi|315917313|ref|ZP_07913553.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC 25563] gi|313691188|gb|EFS28023.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC 25563] Length = 329 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 35/278 (12%), Positives = 90/278 (32%), Gaps = 12/278 (4%) Query: 57 KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD---FDYRK 113 K E +S + T + L++ + + + S ++ ++++ G + Sbjct: 37 KIEKNDSMEEDIWTNERLLNTFLSAKRVEGCSEKSLSYYQKTIERMLNSIGKEIKYIVTD 96 Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 ++ ++ + + + F W ++Y+ +P + + K + Sbjct: 97 DLRSYLTEYQSEKQSSRVTIDNIRRILSSFFSWLEDEDYILKSPVRRIHKVKTISSIKDT 156 Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTI 232 ++ E++++ + E + + L +G+R + Q ++ I K Sbjct: 157 YSDEELERMRDSCHE-IRDLALIDILASTGMRVGELVLLNRQDIKFGERECIVFGKGDKE 215 Query: 233 ITVELPDGFMKLLAMTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-S 285 V L + ++ + + + +NK Sbjct: 216 RVVYFDARTKIHLQNYLNTRVDSNPALFVALRKPYNRLTIGGIEVRLRKIGKELEINKVH 275 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 H R+ ATI+ D G +L G + +D Y Sbjct: 276 PHKFRRTLATIAIDKGMPIEQLQKLLGHRRIDTTLQYA 313 >gi|296139371|ref|YP_003646614.1| integrase family protein [Tsukamurella paurometabola DSM 20162] gi|296027505|gb|ADG78275.1| integrase family protein [Tsukamurella paurometabola DSM 20162] Length = 298 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 40/292 (13%), Positives = 98/292 (33%), Gaps = 28/292 (9%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTP 130 ++EY + + ++ ++ + + + + ++ +R+ + R + Sbjct: 4 ALAEYERYLRLERGRSEHTVRAYLADLTALFEFAAERGVAVDRLDLATLRAWLGERAASG 63 Query: 131 S---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + + + +S R WA R+ ++ +P ++ P+ + + +D + + Sbjct: 64 AARTTLARQASSARNYTAWAARRGHLDGDPGARLKAPRPRRTLPGVLSADDAAAALTNAA 123 Query: 188 EGS--------QPRLAFEFLLYSGLRCSDSCRAGV-QHLQNNIFSIKTQKTGTIITVELP 238 G+ + + E L +G+R S+ C V ++ K TV Sbjct: 124 SGAAEGDPIAVRDQAITELLYATGIRVSELCGLDVGSVDRDRRVVRVIGKGNKERTVPYG 183 Query: 239 DGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKA--GVNKSA 286 ++L F+ +++ Q G + Sbjct: 184 APAAEVLGRWVDEARPQLVAEKSGAALFLGARGGRLDPRQARTVVHQVTGSVPGGREVAP 243 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSR 337 HG+R +AT D GA + G ++ + YT R+R + + Sbjct: 244 HGLRHTAATHLLDGGADLRVVQELLGHSSLATTQLYTHVSVARLRAAHEQAH 295 >gi|229092729|ref|ZP_04223874.1| Phage integrase [Bacillus cereus Rock3-42] gi|228690655|gb|EEL44433.1| Phage integrase [Bacillus cereus Rock3-42] Length = 387 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 37/360 (10%), Positives = 105/360 (29%), Gaps = 46/360 (12%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN--SPRKKPTTL 71 + +G Y + + + F + + + ++ +N PT+L Sbjct: 11 RKVSNG-WQYRIKFKDPYTHQYKEKTKRGFKTKKEAQIAAAEEEQRILNGFEIENVPTSL 69 Query: 72 KWLISEYRKSAHWGSLAVNS-RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 K+ + ++ K ++ N+ + + II + + + + ++ + Sbjct: 70 KYFLEDWLKVYKENTVRKNTFILHKRNIEKHIIPYFKNINLKDLKPMMYQNFINHLTDQG 129 Query: 131 SSAIQFLTSMRVLFKWAVRQEYV-------AINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 S R + + + + +S + K++ T++ + K Sbjct: 130 YSKGTVKIIHRTMNNAMCKAVSLKKIGTNPCDDVVISNKNQKKEEGLKYMRTEDIPRFLK 189 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-------------------I 224 + + + F+ L+ +G+R ++ + + Sbjct: 190 ASYQYNYIYYIFFKTLINTGMRKGEAAALQWSDIDFKEQTINITKTLDFTAKDDEELFGD 249 Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN--------------ATQFS 270 + + LL E + + K + + Sbjct: 250 TKTFSSRRTIMIPAPLAKDLLNHKKWQNENKLVLQESYKHDLDLVFTKTDGNFLPKSTLF 309 Query: 271 IWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADR 328 F K + H +R A + ++GA + G K+++ Y+ +D+ Sbjct: 310 NAFSRILKKVNIPSLDIHSLRHTHAVLLLESGANLKYIQERLGHKSIEMTSNVYSHISDK 369 >gi|197344628|gb|ACH69660.1| phage integrase [uncultured bacterium] Length = 291 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 37/274 (13%), Positives = 83/274 (30%), Gaps = 23/274 (8%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129 T+ L +LA ++ ++ + R + + +R Sbjct: 7 TVSPLRQRMLDDMRMRNLAPKTQSAYIRAVRSLTRYL-RRSPDTASPEDLRLFQLHMVDA 65 Query: 130 PSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 +SA LT ++ F + + + + + ++E++ + Sbjct: 66 GTSAVSLNATLTGLKFFFDVTLER----SDAMAKMRPVRTPRRLPVVLSQEEVSR-LIAA 120 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246 + + + A +GLR + R V + + +++ + + L Sbjct: 121 APSIKYQTALSVAYGAGLRVGEIVRLRVADIDSQRMTLRVDQGKGRKDRYAILPPLLLQR 180 Query: 247 MTPIGK------------ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKF 292 + K F + Q M+A Q + A AG+ K H +R Sbjct: 181 LRAWWKAAHAEGAIRADGWLFPGRDPVQPMSARQLNRVVHEAAAAAGIGKRVAMHTLRHS 240 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA 326 AT + + G K ++ Y + A Sbjct: 241 FATHLLEQKVDIRVIQVLLGHKKLETTSMYAQVA 274 >gi|253681402|ref|ZP_04862199.1| putative integrase/recombinase [Clostridium botulinum D str. 1873] gi|253561114|gb|EES90566.1| putative integrase/recombinase [Clostridium botulinum D str. 1873] Length = 274 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 37/264 (14%), Positives = 74/264 (28%), Gaps = 21/264 (7%) Query: 82 AHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKH----TPSSAIQ 135 + + S+ Q KI I + + + Sbjct: 12 LAKTRKSEKTIDSYIRDISQFNDYLKTNKKKLAKIKISDIDEFKNFLIYHKELKIKTINR 71 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS--EGSQPR 193 L S++ K+ + E+ + + + +D++ + + R Sbjct: 72 KLVSIKQYLKFNNISVDI------KQEKVQMQNFLDDMLSNQDIENIIKATYAKDDLRAR 125 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253 L Y+G+R S+ + + + K V +P+ + + Sbjct: 126 TIIYTLYYTGMRVSEMLQLTI-YDTKKSSISIIGKGSKHREVFVPNKLKTIWDNYLQVRI 184 Query: 254 TFF---INNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHEL 307 + +N K A AGV+KS AH R AD G + Sbjct: 185 KKSTALFTGKRGPINRKTVDSIIKTYAEAAGVDKSKAHAHNFRHLYCKNLADRGIDISTI 244 Query: 308 MATYGWKTVDQAETYTKGADRIRL 331 G + ++ YT+ L Sbjct: 245 ADIAGHQNINTTRIYTRKTKEELL 268 >gi|253774476|ref|YP_003037307.1| integrase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254160604|ref|YP_003043712.1| putative integrase [Escherichia coli B str. REL606] gi|297516723|ref|ZP_06935109.1| predicted integrase [Escherichia coli OP50] gi|242376315|emb|CAQ31008.1| DLP12 prophage; predicted integrase [Escherichia coli BL21(DE3)] gi|253325520|gb|ACT30122.1| integrase family protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972505|gb|ACT38176.1| predicted integrase [Escherichia coli B str. REL606] gi|253976715|gb|ACT42385.1| predicted integrase [Escherichia coli BL21(DE3)] Length = 387 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 51/378 (13%), Positives = 112/378 (29%), Gaps = 56/378 (14%) Query: 17 RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76 R+ + G+RI+ A T + Sbjct: 6 RNEIWYASYSLPGGKRIKESL-GTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEACL 64 Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS----- 131 + + S S +S + + + I+ I S V + + Sbjct: 65 RWLEEKADKK----SLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWK 120 Query: 132 ------------------------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167 + + L ++ + + A +++ + ++ P + Sbjct: 121 QKVQAAIRKGKELPVYEPKPVPTQTKAKHLAMIKAILR-AAERDWKWLEKAPVIKIPAVR 179 Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFS 223 + +R KE+ ++ E + +F L +GLR S+ Q + + Sbjct: 180 NKRVRWLEKEEAKRLIDECPEPLKS--VVKFALATGLRKSNIINLEWQQIDMQRRVAWVN 237 Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI------------ 271 + K+ I V L D K+L + + K A S Sbjct: 238 PEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKT 297 Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 + + +AG+ + H +R A+ +G L GW++++ Y A Sbjct: 298 SWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNH- 356 Query: 331 LGIKNSRRISSVVDSDDP 348 +++R+I + + P Sbjct: 357 -LTEHARKIDDIFGDNVP 373 >gi|193067676|ref|ZP_03048643.1| prophage DLP12 integrase [Escherichia coli E110019] gi|218703820|ref|YP_002411339.1| putative integrase; DLP12 prophage [Escherichia coli UMN026] gi|293403658|ref|ZP_06647749.1| prophage DLP12 integrase [Escherichia coli FVEC1412] gi|298379268|ref|ZP_06989149.1| prophage DLP12 integrase [Escherichia coli FVEC1302] gi|300897234|ref|ZP_07115677.1| site-specific recombinase, phage integrase family [Escherichia coli MS 198-1] gi|300903189|ref|ZP_07121121.1| site-specific recombinase, phage integrase family [Escherichia coli MS 84-1] gi|300929099|ref|ZP_07144593.1| site-specific recombinase, phage integrase family [Escherichia coli MS 187-1] gi|301301694|ref|ZP_07207829.1| site-specific recombinase, phage integrase family [Escherichia coli MS 124-1] gi|192959088|gb|EDV89524.1| prophage DLP12 integrase [Escherichia coli E110019] gi|218430917|emb|CAR11791.1| putative integrase; DLP12 prophage [Escherichia coli UMN026] gi|291429511|gb|EFF02531.1| prophage DLP12 integrase [Escherichia coli FVEC1412] gi|298280381|gb|EFI21885.1| prophage DLP12 integrase [Escherichia coli FVEC1302] gi|300358976|gb|EFJ74846.1| site-specific recombinase, phage integrase family [Escherichia coli MS 198-1] gi|300404804|gb|EFJ88342.1| site-specific recombinase, phage integrase family [Escherichia coli MS 84-1] gi|300462972|gb|EFK26465.1| site-specific recombinase, phage integrase family [Escherichia coli MS 187-1] gi|300843191|gb|EFK70951.1| site-specific recombinase, phage integrase family [Escherichia coli MS 124-1] gi|315256368|gb|EFU36336.1| site-specific recombinase, phage integrase family [Escherichia coli MS 85-1] gi|324116774|gb|EGC10688.1| phage integrase [Escherichia coli E1167] gi|327254885|gb|EGE66501.1| prophage DLP12 integrase [Escherichia coli STEC_7v] Length = 387 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 51/378 (13%), Positives = 112/378 (29%), Gaps = 56/378 (14%) Query: 17 RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76 R+ + G+RI+ A T + Sbjct: 6 RNEIWYASYSLPGGKRIKESL-GTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEACL 64 Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS----- 131 + + S S +S + + + I+ I S V + + Sbjct: 65 RWLEEKADKK----SLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWK 120 Query: 132 ------------------------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167 + + L ++ + + A +++ + ++ P + Sbjct: 121 QKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILR-AAERDWKWLEKAPVIKIPAVR 179 Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFS 223 + +R KE+ ++ E + +F L +GLR S+ Q + + Sbjct: 180 NKRVRWLEKEEAKRLIDECPEPLKS--VVKFALATGLRKSNIINLEWQQIDMQRRVAWVN 237 Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI------------ 271 + K+ I V L D K+L + + K A S Sbjct: 238 PEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKT 297 Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 + + +AG+ + H +R A+ +G L GW++++ Y A Sbjct: 298 SWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNH- 356 Query: 331 LGIKNSRRISSVVDSDDP 348 +++R+I + + P Sbjct: 357 -LTEHARKIDDIFGDNVP 373 >gi|317483230|ref|ZP_07942225.1| phage integrase [Bifidobacterium sp. 12_1_47BFAA] gi|316915299|gb|EFV36726.1| phage integrase [Bifidobacterium sp. 12_1_47BFAA] Length = 387 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 58/353 (16%), Positives = 107/353 (30%), Gaps = 38/353 (10%) Query: 10 FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 VT+ +T G+ Y RK + + + P Sbjct: 3 NVTRYKTSKGENRY--RKPDSTQTDKRGFRRKIDAENWAAEHVTIAKATNSYVDPEDGKR 60 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVESRKH 128 + L ++ K W +R++ + + D IT +++ + Sbjct: 61 RVGDLYEQWLKE-KWPFWKETTRVNATEAWRLYCEERWADRRIGTITRAEVQAWISDIIA 119 Query: 129 TPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP--KRKTEGIRPWTKE----DMQ 180 + S + +M + + AVR + + NPC +VE P R+ T Sbjct: 120 SAGAPSVRRPYQTMLGICRMAVRDKLILDNPCENVELPKLPRRKSRRVYLTISRLLAFAD 179 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI---------------FSIK 225 + G++ R L + GLR ++ + L + Sbjct: 180 ECSRGKHLGAERRALVLTLGFCGLRWGEAAALKARDLDFGRGVLHVGGNLVYVGARWVEG 239 Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINN------DKQKMNATQFSIWFKAKATK 279 T K V +P M+ L +E K +A + + W+ Sbjct: 240 TPKNSEERDVPMPLIVMEALKPMCGEREPDERVFRDLRGGPIMKQSAAKTTGWWYHALVC 299 Query: 280 AGVNK----SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD 327 G K + H +R +A+++ AGA L G K + Y D Sbjct: 300 LGWPKEEWPTPHDLRHTAASLAVHAGANVKALQRMLGHKNASMTLDVYADLFD 352 >gi|302385146|ref|YP_003820968.1| integrase family protein [Clostridium saccharolyticum WM1] gi|302195774|gb|ADL03345.1| integrase family protein [Clostridium saccharolyticum WM1] Length = 335 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 40/271 (14%), Positives = 87/271 (32%), Gaps = 15/271 (5%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP--- 130 L+ Y + L+ + ++ ++ + D + R IT+ I+ ++ Sbjct: 55 LLQMYEMNVKKDGLSEKTVKAYMGAMRNMLCVT-DKNIRHITSVDIKYYLDLYAGKGNNV 113 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 + + +F W + + NP +V K + I ++++ + E Sbjct: 114 RTVNNERRFLSAVFTWFRKHGIINANPVEAVPIKKERKPPIDYLKGVEIEKLRVACKE-P 172 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250 + R EFLL +G R + + Q + N I T + + ++ + Sbjct: 173 RDRALMEFLLSTGARIGEVPQIRRQDIDWNTGEILIYAHKTSDYRTVYLNDVAMVHLEKY 232 Query: 251 GKETFFI--------NNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADA 300 ++ + K KAG+ + H RK AT Sbjct: 233 LDSREDNSEALFAGVRAPYNTVHEDGLRLIIKRIGEKAGLKRRVYPHLFRKTMATTLRMK 292 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331 ++ G K + A+++ L Sbjct: 293 DCAIEDIQQILGHKDPSTTLGFYAAANQVHL 323 >gi|288801474|ref|ZP_06406926.1| integrase [Prevotella sp. oral taxon 299 str. F0039] gi|288331555|gb|EFC70041.1| integrase [Prevotella sp. oral taxon 299 str. F0039] Length = 397 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 41/309 (13%), Positives = 91/309 (29%), Gaps = 26/309 (8%) Query: 43 FIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG---SLAVNSRISFE--- 96 F S + R+ T+ L ++Y + ++ + ++ Sbjct: 56 FQRLEFSEELSLERIKSEYLGKREAMETVLSLFTKYNNDMYAQIGCGVS---KANYRKFD 112 Query: 97 ---SYFDQIIR-KSGDFDYRKI--TTKHIRSGVESRK----HTPSSAIQFLTSMRVLFKW 146 +F + K D I T I + + ++AI+ L + + + + Sbjct: 113 ICKRHFTHFLEIKYARTDLNAIELTPIVIHDFDVYLRTIVGQSFNTAIKTLKTFKTVIIF 172 Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSG 203 + +P L++ K K T E++ + R F F ++G Sbjct: 173 GRKAGVFNHDPFLNI-HFKTKRVDRGFLTDEEIDTIMHKEFATQRLVNVRDIFLFSCFTG 231 Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK 263 L D ++ + + M N Sbjct: 232 LAYVDVANLTADNIITMDGKQWIVTARKKTDTLSHILLLDIPKMIIEKYAGCAKNGRLIP 291 Query: 264 M-NATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320 + + + + + K A G+NK + H R AT+ G + G ++ + Sbjct: 292 ILSNQRMNSYLKEIADVCGINKNLTFHMARHTFATMMLTKGVPVESVSKMLGHSSITTTQ 351 Query: 321 TYTKGADRI 329 Y + ++ Sbjct: 352 LYARITNKK 360 >gi|194437475|ref|ZP_03069572.1| prophage DLP12 integrase [Escherichia coli 101-1] gi|260853752|ref|YP_003227643.1| putative integrase [Escherichia coli O26:H11 str. 11368] gi|291281447|ref|YP_003498265.1| Prophage DLP12 integrase [Escherichia coli O55:H7 str. CB9615] gi|293418603|ref|ZP_06661038.1| prophage DLP12 integrase [Escherichia coli B088] gi|194423644|gb|EDX39634.1| prophage DLP12 integrase [Escherichia coli 101-1] gi|257752401|dbj|BAI23903.1| putative integrase [Escherichia coli O26:H11 str. 11368] gi|290761320|gb|ADD55281.1| Prophage DLP12 integrase [Escherichia coli O55:H7 str. CB9615] gi|291325131|gb|EFE64546.1| prophage DLP12 integrase [Escherichia coli B088] gi|323153442|gb|EFZ39697.1| prophage DLP12 integrase [Escherichia coli EPECa14] gi|323963303|gb|EGB58867.1| phage integrase [Escherichia coli H489] Length = 387 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 51/378 (13%), Positives = 112/378 (29%), Gaps = 56/378 (14%) Query: 17 RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76 R+ + G+RI+ A T + Sbjct: 6 RNEIWYASYSLPGGKRIKESL-GTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEACL 64 Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS----- 131 + + S S +S + + + I+ I S V + + Sbjct: 65 RWLEEKADKK----SLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWK 120 Query: 132 ------------------------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167 + + L ++ + + A +++ + ++ P + Sbjct: 121 QKVQAAIRKGKEPPVYEPKPVSTQTKAKHLAMIKAILR-AAERDWKWLEKAPVIKIPAVR 179 Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFS 223 + +R KE+ ++ E + +F L +GLR S+ Q + + Sbjct: 180 NKRVRWLEKEEAKRLIDECPEPLKS--VVKFALATGLRKSNIINLEWQQIDMQRRVAWVN 237 Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI------------ 271 + K+ I V L D K+L + + K A S Sbjct: 238 PEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKT 297 Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 + + +AG+ + H +R A+ +G L GW++++ Y A Sbjct: 298 SWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNH- 356 Query: 331 LGIKNSRRISSVVDSDDP 348 +++R+I + + P Sbjct: 357 -LTEHARKIDDIFGDNVP 373 >gi|163733378|ref|ZP_02140821.1| phage integrase family protein [Roseobacter litoralis Och 149] gi|163736004|ref|ZP_02143430.1| phage integrase family protein [Roseobacter litoralis Och 149] gi|161390729|gb|EDQ15072.1| phage integrase family protein [Roseobacter litoralis Och 149] gi|161393166|gb|EDQ17492.1| phage integrase family protein [Roseobacter litoralis Och 149] Length = 332 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 39/303 (12%), Positives = 87/303 (28%), Gaps = 37/303 (12%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG--------DFDYRKITTKHIRSG 122 L+ +++ + + ++ S+ + +R ++T + + Sbjct: 10 LRMFFTDWM--VQQRNASQHTVKSYRDTWRLFLRFVAVRCGKPVVRLTLSELTAAEVIAF 67 Query: 123 VES----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + R T + L ++R F + +E + C V K IR + Sbjct: 68 LHHLESVRGDTIGTRNCRLAALRSFFGFVATREPELMAQCAEVMNVPTKKAPIRAPDYLE 127 Query: 179 MQ-------QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKT 229 + Q G + FL +G R ++ Q ++ K Sbjct: 128 PEEVQAILAQPDRSTLIGQRDHTLLSFLYNTGARIQEALDLCPQAIRFEAPGCVRLYGKG 187 Query: 230 GTIITVELPDGFMKLLAMTPIGKETF-----FINNDKQKMNATQFSIWFKAKATKAGVNK 284 L + LL F+N ++A+ A V+ Sbjct: 188 RKERISPLWPETVALLRSLLKRVPRPADAALFVNRYGSPLSASGVRFKLAEYVKAAAVDV 247 Query: 285 --------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKN 335 + H R +A AG + + G +++ Y + + R ++ Sbjct: 248 PTLAQKHVTPHSFRHATAVHLVAAGVDVTVIRSWLGHVSLETTNHYAQANLETKRRALEQ 307 Query: 336 SRR 338 + Sbjct: 308 VEK 310 >gi|325911644|ref|ZP_08174052.1| phage integrase, N-terminal SAM domain protein [Lactobacillus iners UPII 143-D] gi|325476630|gb|EGC79788.1| phage integrase, N-terminal SAM domain protein [Lactobacillus iners UPII 143-D] Length = 326 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 37/264 (14%), Positives = 83/264 (31%), Gaps = 14/264 (5%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----K 127 I+ + + + S +ES ++ K G D R ITT+ IR + + K Sbjct: 49 ADYIALFLAAKKIEGRSEKSLKYYESTILKMTEKVG-KDARYITTEDIREYLSNYQLNHK 107 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + + + F W ++Y+ P + + K ++ E+++ + + Sbjct: 108 SSKVTIDNIRRILSSFFSWLEDEDYILKIPVRRIHKVKTGQSIKETYSDEELEIMRDSCT 167 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLA 246 + + + L +G+R + + + K V L Sbjct: 168 K-IRDLAIIDMLASTGMRVGEMVLLNRDDVNFEERECMVFGKGDKERIVYFDARTKLHLE 226 Query: 247 MTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISAD 299 + + +++ + + G+ H R+ AT + D Sbjct: 227 KYLDSRTDNNSALFTSLSAPHERLGIAGIEARLRKLGGELGIYKVHPHKFRRTLATKAID 286 Query: 300 AGATAHELMATYGWKTVDQAETYT 323 G +L G + +D Y Sbjct: 287 KGMPIEQLQKLLGHQRIDTTLQYA 310 >gi|330860733|emb|CBX71025.1| integrase [Yersinia enterocolitica W22703] Length = 332 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 42/292 (14%), Positives = 82/292 (28%), Gaps = 31/292 (10%) Query: 54 STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113 + + ++ L LI + K +++ + S + + I + G+ Sbjct: 20 EQARHKPWLGEKEDRRKLLELIDLWYK---LHGCSLSDKKSRLAKLEIICKGLGNPIAAD 76 Query: 114 ITTKHIRSGVESR----------------KHTPSSAIQFLTSMRVLFKWAVRQ-EYVAIN 156 IT K + R T + +R +F R E+ N Sbjct: 77 ITPKDWAHYRDQRLRGEINNGYSTSLRTRMVTTGTVNSEQAYLRAVFNELTRLGEWSLPN 136 Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGV 214 P +++ + + + + P L L +G R ++ + Sbjct: 137 PLMNIREFDQPEREMAWLNDDQIDSLLDASDLHGNPELTLIVRLCLSTGARWNEIAKIKA 196 Query: 215 QHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274 + N + K TV L + + LA QF + Sbjct: 197 SQISPNKITFINTKGKKNRTVPLSEEMYQALAAHKGKAFAPC---------YKQFYRVIR 247 Query: 275 AKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 + V + H +R A+ AG L G + Y+ A Sbjct: 248 LAQIELPVGQMTHVLRHTFASHFMMAGGNIIVLQRILGHSDIRVTMRYSHFA 299 >gi|313148284|ref|ZP_07810477.1| phage integrase [Bacteroides fragilis 3_1_12] gi|313137051|gb|EFR54411.1| phage integrase [Bacteroides fragilis 3_1_12] Length = 337 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 40/291 (13%), Positives = 81/291 (27%), Gaps = 37/291 (12%) Query: 72 KWLISEYRKSA--HWGSLAVNSRISFESYFDQIIRKSGD--------FDYRKITTKHIRS 121 + I + + +L+ N+ S+ ++ IT + Sbjct: 10 GYWIRRFLCEYLTNIRNLSANTLKSYRDAIRLLMPFVAKCVKKEVDKILLADITDARVVD 69 Query: 122 GVES----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 ++S R + + L ++ K+ I ++ K T Sbjct: 70 FLDSLERNRSCSIKTRNLRLAAVCSFAKYISVNCPEHIEWSRNIRIIPVKKTERTLITYL 129 Query: 178 DMQQF-------KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-----IK 225 + ++ S+G + FL +G R ++ ++ L Sbjct: 130 EKEEMNALLDAPDKNTSQGWRDYALLLFLYNTGARADEAATLLIRDLSLPKRKGLAVVSI 189 Query: 226 TQKTGTIITVELPDGFMKLL---AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG- 281 T K L L E F+N Q + A K Sbjct: 190 TGKGNKTRRCPLWQHTRDALSSIIKNRTKDEYVFLNRFGQPITRFGIYEMVTRYAEKIKE 249 Query: 282 ----VNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 + K S H +R +AT +G + + A G +++ Y + Sbjct: 250 LIPTIKKKRVSPHTIRHTTATHLLQSGVDINTIRAWLGHVSINTTNIYAEV 300 >gi|312978150|ref|ZP_07789894.1| prophage integrase [Lactobacillus crispatus CTV-05] gi|310894868|gb|EFQ43938.1| prophage integrase [Lactobacillus crispatus CTV-05] Length = 402 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 50/388 (12%), Positives = 109/388 (28%), Gaps = 59/388 (15%) Query: 5 LRLPPFVTKERTRHGKIIYYFRKGHG---------RRIRLPYPHESTFIPAYMSALTGST 55 + P +T+ + ++GK + R G + R Sbjct: 6 RKKDPEITEYKLKNGKKFFRLRTYIGISPETGKAIKVTRSKLKSRKEAEEVRRELKAQGP 65 Query: 56 PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115 ++K T++ + + + + R E++ +QI + G+ I+ Sbjct: 66 GTIRKKLETKQKKITVRDAYNAWLEVMRNDVRSSTIRRIKETWKNQIEPEFGNTYISNIS 125 Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 H++ V + + + + K+A+ + + +P V PK+ R T Sbjct: 126 PDHVQKYVNNLASKYVAYKIMANQLHRIIKYAIFRHWCDKDPFDFVIMPKKSAIASRDNT 185 Query: 176 KEDMQQFKSFWSEG------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--------- 220 + + F + G R ++ + + Sbjct: 186 LNFYELDELKRFLDVTKKFSPMTYTYFLTVASLGCRRGEAFALNWSDIDFDKRTVKIERT 245 Query: 221 ------------------IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262 ++ E + K+ P+ T + Sbjct: 246 VAIDENDKKTIDDVKNGIHHTVPMSDHLYTALKEYQNYCHKIGDNCPMPFHTKKGDYMWS 305 Query: 263 KMNATQFSIWFKAKATKAG--------------VNKSAHGVRKFSATISAD--AGATAHE 306 + T ++ A + + HG+R AT+ D G T + Sbjct: 306 SQSDTWIRAIYRYDANQCKEWNDKHPQDEKKPLRKITPHGLRHTLATLLYDGTNGITPKD 365 Query: 307 LMATYGWKTVDQAET-YTKGADRIRLGI 333 + G KT A YT ++ + GI Sbjct: 366 IQFVLGHKTPRTAMRIYTHVTEKQKKGI 393 >gi|307821936|ref|ZP_07652168.1| integrase family protein [Methylobacter tundripaludum SV96] gi|307823188|ref|ZP_07653418.1| integrase family protein [Methylobacter tundripaludum SV96] gi|307824260|ref|ZP_07654486.1| integrase family protein [Methylobacter tundripaludum SV96] gi|307825345|ref|ZP_07655564.1| integrase family protein [Methylobacter tundripaludum SV96] gi|307733520|gb|EFO04378.1| integrase family protein [Methylobacter tundripaludum SV96] gi|307734640|gb|EFO05491.1| integrase family protein [Methylobacter tundripaludum SV96] gi|307735963|gb|EFO06810.1| integrase family protein [Methylobacter tundripaludum SV96] gi|307736502|gb|EFO07347.1| integrase family protein [Methylobacter tundripaludum SV96] Length = 291 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 32/271 (11%), Positives = 75/271 (27%), Gaps = 25/271 (9%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKHT 129 L L+ ++ S+ + G + + + + Sbjct: 11 LRQRMIDDMRMRKLSPKTQASYIRVVKRFAGFLGRSPDTASVEDLRRYQL--HLVDHGIS 68 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 P S LT ++ LF+ + + + P + + + Sbjct: 69 PISLNATLTGLKFLFETTLDRPELLTKM-----HPVHVPHKLPVVLSREEVARLIAAVDN 123 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLLAM 247 + + A +GLR S+ V + + +++ ++ L ++ L Sbjct: 124 LKHQTALSVAYGAGLRASEVVSLKVGDIDSQRMTLRIEQGKGSKDRYAMLSPVLLERLRA 183 Query: 248 TPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSAT 295 + ++ Q + A A A ++K H +R AT Sbjct: 184 WWKFAHAQGKMLQGGWLFPGLDPIDPLSTRQLNRAIHAAAEAARIDKRVSMHTLRHSFAT 243 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGA 326 + + G K ++ Y + A Sbjct: 244 HLLEQKVDIRVIQVLLGHKKLETTALYAQVA 274 >gi|313903463|ref|ZP_07836854.1| integrase family protein [Thermaerobacter subterraneus DSM 13965] gi|313466284|gb|EFR61807.1| integrase family protein [Thermaerobacter subterraneus DSM 13965] Length = 383 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 41/383 (10%), Positives = 105/383 (27%), Gaps = 45/383 (11%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 + K + +IY R + + + L + Sbjct: 3 GHIRKRGNKWAVVIYLGRDEATGKKQYRWHGGFKTKADAERELARLVNDAHTGAYVEPEK 62 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVE--- 124 ++ + + +A + +E +I G + +K+ HI++ Sbjct: 63 MSVAEYLRFWLGDIRSR-VAPTTFHRYEIIVERHLIPALGKYQLQKLRPAHIQAYYRDAL 121 Query: 125 -------SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 + + + + + AV+ + +A NP +V+ P+ + + +R K+ Sbjct: 122 ENGRRDGKGGLSKRTVLHHHRVLHEALEHAVQLQMLARNPADAVKPPRPERKEMRVLDKD 181 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-------------------- 217 ++++ S+ + + +G+R + + + Sbjct: 182 EIERLLETARR-SRYYIPILLAIATGMRRGEILALRWEDVDLEGGRISVRQTLVKTGDGL 240 Query: 218 ----------QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT 267 + I L + + + Sbjct: 241 QFTDPKTDRSRRVIRIGPLVVQALRRHRAQQAQEKLRLGPAYQDHGLVCAQANGKPYDPA 300 Query: 268 QFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKG 325 +FS F + A +AG H +R AT+ G + G + +TY Sbjct: 301 EFSKAFTSLAKRAGFPDLRFHDLRHSHATLLLRDGTPIKAVAERLGHASAAFTLDTYGHS 360 Query: 326 ADRIRLGIKNSRRISSVVDSDDP 348 ++ +++P Sbjct: 361 LPDMQEAAARVVDALLSAPAENP 383 >gi|229496223|ref|ZP_04389943.1| integrase [Porphyromonas endodontalis ATCC 35406] gi|229316801|gb|EEN82714.1| integrase [Porphyromonas endodontalis ATCC 35406] Length = 388 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 45/266 (16%), Positives = 91/266 (34%), Gaps = 19/266 (7%) Query: 82 AHWGSLAVNSRISFE---SYFDQIIRKSG--DFDYRKITTKHI---RSGVESRKHTPSSA 133 A + + + + + +R G D IT R ++ + P++ Sbjct: 114 AQRETKSEGTYSNNRCSDRQLNAFVRSRGEEDIPLTAITIDFFDDYRFHLKKEGYAPATI 173 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP- 192 + L + L AV Q + NP V+ + R +K D+ +F +F + + Sbjct: 174 NRHLCWLSRLMYRAVSQGTIRFNPFEEVKYETVER-KPRFLSKGDVAKFLAFPLQDERAE 232 Query: 193 --RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-----VELPDGFMKLL 245 R F F +++GL +D ++ N + + T + L ++L Sbjct: 233 LSRRMFLFSVFTGLAFADLQSLRASQIETNSEGKRYIRKARQKTEVESLIPLHPIAEQIL 292 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303 ++ M+ + KA GV S H R T++ +AG Sbjct: 293 SLYTKKNSKEDYKIFPDTMSKGKLLTHLKAVGLACGVRTPLSYHVGRHSFGTLTLEAGIP 352 Query: 304 AHELMATYGWKTVDQAETYTKGADRI 329 + G ++ + Y + D+ Sbjct: 353 IESIAKMMGHSSIASTQIYAQITDQK 378 >gi|225017866|ref|ZP_03707058.1| hypothetical protein CLOSTMETH_01800 [Clostridium methylpentosum DSM 5476] gi|224949378|gb|EEG30587.1| hypothetical protein CLOSTMETH_01800 [Clostridium methylpentosum DSM 5476] Length = 333 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 33/278 (11%), Positives = 75/278 (26%), Gaps = 24/278 (8%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSA 133 + + A + + + ++ Q T + +S + T P++ Sbjct: 39 DLFARFAQYLDASPRTVDTYARALKQFRLWLATQGIGSPTRADVLRYRDSLRQTRKPATT 98 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGS 190 ++ ++R F+W ++ + T MQ S Sbjct: 99 QLYMAAIRQFFRWTEQEGLYPDIAAHLKGAKISREHKKDALTPAQMQAVLGALSGHDLMS 158 Query: 191 QPRLAFEFLLYSGLRCSDSC----------RAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 + A + +G + R L + + + + Sbjct: 159 RRDFALVSVAVTGGLRTVELVRADVGDLRNRGEHTVLYIQGKGQMEKADYVKLPFPVLEA 218 Query: 241 FMKLLAMTPIGKETF------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRK 291 L M + N ++ S K +AG + +AH +R Sbjct: 219 VNAYLTMRGKTRPEDALFASLSHRNGGGRLTTRSVSRIVKTAFRRAGWDSDRLTAHSLRH 278 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +AT++ G + E ++ Y +R Sbjct: 279 TAATLNLLGGGSLEETQQLLRHSDINTTMVYLHHLERE 316 >gi|325956998|ref|YP_004292410.1| integrase [Lactobacillus acidophilus 30SC] gi|325333563|gb|ADZ07471.1| integrase [Lactobacillus acidophilus 30SC] Length = 373 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 34/349 (9%), Positives = 81/349 (23%), Gaps = 47/349 (13%) Query: 16 TRHGKIIYYFRKGHG---------------RRIRLPYPHESTFIPAYMSALTGSTPKREY 60 + GK +Y R ++ Y + ++ Sbjct: 5 KKRGKT-WYVRFSKRETSWNPEKQQHVSVLKQKSKGGFKTKAEAQQYGIKMEAAS----I 59 Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 + ++ ++ + + + + + + GD + IT + Sbjct: 60 SGIDVTNNPVFADYMQKWFETYKKPNCSPATSTKYNYEINLVRNYFGDLTIKDITRTKYQ 119 Query: 121 SGVE--SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK------TEGIR 172 + ++KH P + + S+R A+ ++ + V+ K T Sbjct: 120 EFINFTAKKHAPVTVKKLNGSVRACVNSAIIDGLISADFTKQVQVHGNKDKELAVTYLNI 179 Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS---IKTQKT 229 K Q S R +++G R + + K+ Sbjct: 180 EEIKRLTQTTISNLDITIPSRYMVLTAIFTGARLGEISGLQWNDIDFANNIIDINKSWNW 239 Query: 230 GTIITVELPD--------------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275 + + L + + + ++ Sbjct: 240 QRKRMGPTKNKSSIRKIKVNDFLLERLNDLRANNCKFVFGNPAENNLPPTSATANSTLRS 299 Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 A +NK H +R + G V Y Sbjct: 300 LLKDANINKDIHFHSLRHIHVAYLIKKHVDIVAISQRLGHSNVATTLKY 348 >gi|317056716|ref|YP_004105183.1| integrase family protein [Ruminococcus albus 7] gi|315448985|gb|ADU22549.1| integrase family protein [Ruminococcus albus 7] Length = 335 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 35/300 (11%), Positives = 94/300 (31%), Gaps = 44/300 (14%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKS---------GDFDYRKIT------------- 115 Y + + ++ +R + + ++T Sbjct: 19 YMQLVKARG--DRTVEAYYIDLRSFLRYLRIKHKDIDTNNVPFEEMTISEVPFEYVSKLR 76 Query: 116 ----TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEG 170 +++ + R ++ + + ++++ + + ++ + +P +E PK Sbjct: 77 LIDAYDYLKWLADERSNSVKTRARKTSALKQFYSYLYLKKNSIPSDPLTQLELPKLPKTL 136 Query: 171 IRPWTKEDMQQFKSFWSEGS--QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQ 227 + + ED Q+ S + L G+R S+ C + +I+ Sbjct: 137 PKYLSLEDAQRLLSSIESDHFERDYCMITLFLNCGMRLSELCGLDIGDFSFESGTIRLFG 196 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFIN-------NDKQKMNATQFSIWFKAKATKA 280 K V + + L + + N +++ + + KA Sbjct: 197 KGQKERVVYINQACIAALKAYLPIRLSVQTQEKALFLSNRNTRISRRRTQEIVEESLKKA 256 Query: 281 GVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADR-IRLGIKN 335 G+ + H +R +AT+ G L G +++ E YT ++ ++ + Sbjct: 257 GLGNLGITTHKLRHTAATLMYQYGNVDTLVLKDILGHESLATTEIYTHLSNENLKQAAEA 316 >gi|291004130|ref|ZP_06562103.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338] Length = 301 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 36/307 (11%), Positives = 82/307 (26%), Gaps = 39/307 (12%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGVES 125 + + + L+ ++ ++ ++ + +R + + Sbjct: 2 GAAVDGFERHLKAERGLSAHTVRAYIGDVVSLLDHFCAGDEERKGLNGLGLTVLREWLAA 61 Query: 126 RKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + + S+ + S R WA R E + +P + P K + E + Sbjct: 62 QHADGASRSTLARRAASARTFTAWAHRAELLPHDPGPRLAAPAPKRKLPTVLRAEQAKSA 121 Query: 183 KSFWSEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTII 233 S G + E L +G+R S+ C + + + ++ Sbjct: 122 MSASQAGAEQGDPIALRDHAVVELLYATGVRVSELCGLDLDDVDHERRVVRVIGKGDKER 181 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAG-- 281 V ++ + + Sbjct: 182 AVPFGVPAEDAVSRWISAGRPELATDASGPALFLGARGGRLDPRAVRRVVHDAVGAVSGA 241 Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 + HG+R +AT + GA + G T+ + YT R+ + Sbjct: 242 TDVGPHGLRHSAATHLLEGGADLRSVQELLGHATLATTQLYTHVT---------VERLKA 292 Query: 342 VVDSDDP 348 + D P Sbjct: 293 IHDRTHP 299 >gi|266622036|ref|ZP_06114971.1| integrase [Clostridium hathewayi DSM 13479] gi|288866275|gb|EFC98573.1| integrase [Clostridium hathewayi DSM 13479] Length = 406 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 47/391 (12%), Positives = 107/391 (27%), Gaps = 65/391 (16%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 + + + G + +G+R + A Sbjct: 12 KGIYQRKD--GLYSARYYSKNGKRKERYFETLPEAKNWLADARYEERHNL----IVTSPD 65 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRK 127 T+ + + ++ LA N++ +++ + I G + H ++ + + Sbjct: 66 MTVDKWFTYWIENI-VCDLAPNTKRNYQERYKWNIQPVIGAMCIADVKPMHCKAVLNRME 124 Query: 128 HT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER--PKRKTEGIRPWTKEDMQQFK 183 T S+ Q +M + K AV + +A +P V P R + I+ T E+ ++F Sbjct: 125 TTYAGSTIRQAYITMGTMLKSAVMNDIIAKHPMNGVRYTKPVRAVDDIKYLTVEEQEKFL 184 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD---- 239 S + LL +GLR ++ + ++ K+ + Sbjct: 185 EAA-ARSHNYRQYALLLETGLRTAEMIGLTWDAIDWKNRTLTVNKSLEYRHSQGYWRAGP 243 Query: 240 -------------------------------------GFMKLLA-------MTPIGKETF 255 ++ + + F Sbjct: 244 PKTQKSYRTIPLTDKAYSILKSCYDEKDSRKSSETLSQVLEYIDSRTGENKCLIMRDLVF 303 Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWK 314 + + + +AG+ + H +R AT + + G L G Sbjct: 304 VNWRTGEPAKNSSYDTHLYKLCDEAGIKRFCMHALRHTYATRAIERGVQPKVLQQLLGHA 363 Query: 315 TVDQAE-TYTKGADRIRLGIKNSRRISSVVD 344 ++ Y D + R+ Sbjct: 364 SIKTTMDRYVHVTDES--LVNAIRQFQQATP 392 >gi|193064166|ref|ZP_03045250.1| prophage DLP12 integrase [Escherichia coli E22] gi|218557442|ref|YP_002390355.1| integrase; DLP12 prophage [Escherichia coli S88] gi|256023847|ref|ZP_05437712.1| putative integrase; DLP12 prophage [Escherichia sp. 4_1_40B] gi|260842731|ref|YP_003220509.1| putative integrase [Escherichia coli O103:H2 str. 12009] gi|300925815|ref|ZP_07141669.1| site-specific recombinase, phage integrase family [Escherichia coli MS 182-1] gi|301327810|ref|ZP_07221004.1| site-specific recombinase, phage integrase family [Escherichia coli MS 78-1] gi|192929195|gb|EDV82805.1| prophage DLP12 integrase [Escherichia coli E22] gi|218364211|emb|CAR01876.1| putative integrase; DLP12 prophage [Escherichia coli S88] gi|257757878|dbj|BAI29375.1| predicted integrase [Escherichia coli O103:H2 str. 12009] gi|294493655|gb|ADE92411.1| site-specific recombinase, phage integrase family [Escherichia coli IHE3034] gi|300418109|gb|EFK01420.1| site-specific recombinase, phage integrase family [Escherichia coli MS 182-1] gi|300845647|gb|EFK73407.1| site-specific recombinase, phage integrase family [Escherichia coli MS 78-1] gi|320201465|gb|EFW76045.1| Phage integrase [Escherichia coli EC4100B] gi|323160889|gb|EFZ46814.1| prophage DLP12 integrase [Escherichia coli E128010] Length = 387 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 51/378 (13%), Positives = 112/378 (29%), Gaps = 56/378 (14%) Query: 17 RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76 R+ + G+RI+ A T + Sbjct: 6 RNEIWYASYSLPGGKRIKESL-GTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEACL 64 Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS----- 131 + + S S +S + + + I+ I S V + + Sbjct: 65 RWLEEKADKK----SLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWK 120 Query: 132 ------------------------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167 + + L ++ + + A +++ + ++ P + Sbjct: 121 QKVQAAIRKGKEPPVYEPKPVSTQTKAKHLAMIKAILR-AAERDWKWLEKAPVIKIPAVR 179 Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFS 223 + +R KE+ ++ E + +F L +GLR S+ Q + + Sbjct: 180 NKRVRWLEKEEAKRLIDECPEPLKS--VVKFALATGLRKSNIINLEWQQIDMQRRVAWVN 237 Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI------------ 271 + K+ I V L D K+L + + K A S Sbjct: 238 PEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKT 297 Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 + + +AG+ + H +R A+ +G L GW++++ Y A Sbjct: 298 SWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNH- 356 Query: 331 LGIKNSRRISSVVDSDDP 348 +++R+I + + P Sbjct: 357 -LTEHARKIDDIFGDNVP 373 >gi|120602084|ref|YP_966484.1| phage integrase family protein [Desulfovibrio vulgaris DP4] gi|120562313|gb|ABM28057.1| phage integrase family protein [Desulfovibrio vulgaris DP4] Length = 372 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 38/305 (12%), Positives = 80/305 (26%), Gaps = 19/305 (6%) Query: 37 YPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFE 96 + + + S + RK T+ + Y + W + + Sbjct: 47 EGYTAAYASDVRSERVRDIRHGKSSPQGRKGELTINDAWALYLE--KWLHGKPSEQSDEA 104 Query: 97 SYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQ-EYV 153 Y + G + I + +P + L +R +++ EY Sbjct: 105 LYRLWLAPAFGMKKMAGVRPVDIEEFKNRMLAQRSPQTVKHALGLLRRVYRKMAAWGEYK 164 Query: 154 AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL-AFEFLLYSGLRCSDSCRA 212 P +SV PK +R T ++ + + S L++GLR + Sbjct: 165 GDIPTVSVPMPKVDNGRLRFLTPDEAVRLVEALRKRSVLWADVSLVSLHAGLRLDEILGL 224 Query: 213 GVQHLQ--------NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264 H+ + + K N ++ Sbjct: 225 QACHVDIDNRLLHVMDAKCGTRTVPLADRGLCEMLRQRKAACSGAEDFVFKNRNGERINN 284 Query: 265 NATQFSIWFKAKATKAGVNKS-----AHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 + + G+ H +R + A G + + G T++ Sbjct: 285 ISQTVVRVIQDLGFNHGITDRRHKVVFHTLRHTFGSWMAQRGVPLYVIGELMGHSTLEMT 344 Query: 320 ETYTK 324 Y+K Sbjct: 345 RRYSK 349 >gi|215401172|ref|YP_002332477.1| integrase [Staphylococcus phage phiSauS-IPLA88] gi|215260399|gb|ACJ64530.1| gp1 [Staphylococcus phage phiSauS-IPLA88] Length = 354 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 44/352 (12%), Positives = 101/352 (28%), Gaps = 30/352 (8%) Query: 18 HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77 GK Y F R + + + + A A T+ ++ Sbjct: 8 KGKWYYDFGHKGKRYKKKGFTTKREAVQAESIARNKVMK-----GFKINDKTSFIAYYND 62 Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSG-----DFDYRKITTKHIRSGVESRK--HTP 130 + K G + + +F++ +Q + + T R ++ H+ Sbjct: 63 WIKVNKEGVITDKAYANFKNAINQFKTFLEVENISNLVLSDLNTTFYRKFIKWYGSNHST 122 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSV----ERPKRKTEGIRPWTKEDMQQFKSFW 186 + + ++ A+++ + +P V P ++ E K+ + + Sbjct: 123 ETVRKIHNCLKQPIDDAIQEGLIHKDPTYKVVVKGTIPAQREEEKFMSIKDFINLKEYVS 182 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------ITVELPD 239 + Q L L+ +G R + R L +I T T I Sbjct: 183 NTPIQSYLFIYILIITGGRFGEVQRLCTSDLDYKNCTIHLPGTKTETSDRTVDIPQNDMK 242 Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISA 298 LA PI T N + + + + + + H +R + Sbjct: 243 ILKNTLAEMPISLTTQLFNTGTSLITHNAVTKVMQRYCLEKRIGKYTLHSIRHTHCSYLL 302 Query: 299 DAGATAHELMATYGWKTVDQAE-TYTKGAD-----RIRLGIKNSRRISSVVD 344 + + + G K++ Y+ D + ++ ++ Sbjct: 303 HNDVSIYYISKRLGHKSIKTTMDVYSHLLDEIEQKEKEKALDALENMTGTLN 354 >gi|160885083|ref|ZP_02066086.1| hypothetical protein BACOVA_03081 [Bacteroides ovatus ATCC 8483] gi|293371572|ref|ZP_06617989.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|156109433|gb|EDO11178.1| hypothetical protein BACOVA_03081 [Bacteroides ovatus ATCC 8483] gi|292633455|gb|EFF52021.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] Length = 390 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 42/270 (15%), Positives = 84/270 (31%), Gaps = 14/270 (5%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 + ++ +++ SL ++R + S + + + + +T + + S + Sbjct: 106 RSFLTFFKEEIANSSLKESTRQNHLSTLELLQEFKKEVLFTDLTFEFVSSFDNYLQSKGY 165 Query: 132 SAIQFLTSMRVLFKWAV----RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 M+ L ++ ++ + K E++ +F++ Sbjct: 166 HLNTIAKHMKHLKRYINVAINKEYMDIQKYAFRKYKIKSIEGSHTHLAPEELHKFENLQL 225 Query: 188 EGSQPRL-----AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242 G RL AF F Y+GLR SD ++ +E+ Sbjct: 226 TGRYTRLQKTKDAFLFCCYAGLRYSDFTNLTSANIVEFHQETWIIYKSVKTGMEVRLPLY 285 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAHGVRKFSATIS 297 L I + ++ S K AG+ S H R +AT+ Sbjct: 286 LLFEGKGIQILQRYKDDFNSFFKLKDNSNINKELNILAGLAKIDKRVSFHTARHTNATLL 345 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGAD 327 GA + G K+V + Y D Sbjct: 346 LYNGANITTVQKLLGHKSVKTTQVYANIMD 375 >gi|268611875|ref|ZP_06145602.1| hypothetical protein RflaF_20511 [Ruminococcus flavefaciens FD-1] Length = 465 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 54/417 (12%), Positives = 114/417 (27%), Gaps = 79/417 (18%) Query: 4 SLRLPPFVTKERT--RHGKIIYYFRKGH--GRRIR------LPYPHESTFIPAYMSALTG 53 LP K T ++GK F G+R R LP + + A+ Sbjct: 2 KASLP---YKYITSVKNGKHYVVFDYKDHSGKRKRKWVNTELPEKCSKKALKEAVEAIVA 58 Query: 54 STPK----------------REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFE- 96 K ++ L +E+ ++A + + + Sbjct: 59 EFDKSISEGEIAVKSANAVPYAVMSDETASTMLLDDFFTEWLTYIKP-NVARTTHLCYRK 117 Query: 97 ---SYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQ 150 Y + I + ++ HI++ + + S+A Q+ ++ F +AV+ Sbjct: 118 VSKRYMEYINENYPNLTLGQVNHNHIQNYLNYKLDSGCKGSTAKQYYLALHSAFAYAVKM 177 Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210 E + +P + P+ + + D +G + L Y GLR + Sbjct: 178 ELIPKHPMDKLVVPRAERHEA-TFYNADELNELFEVFKGDKLELVVNIAAYYGLRRCEIL 236 Query: 211 RAGVQHLQNNIFSIKTQK----------------------TGTIITVELPDGFMKLL--- 245 + +I Q+ T T+ L ++L Sbjct: 237 GLRWDAIDFKNKTITIQRKIVSDYDDNGEIKIFVETRLKTNSTRRTLPLIPHIEEMLLEK 296 Query: 246 -------------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRK 291 + +N ++ + F T+ G+ H +R Sbjct: 297 KKMEVKFKKACGKSYNKEFDGFICRDNYGNMISPGYVTQHFHYIITRNGLKHLRFHDLRH 356 Query: 292 FSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRL-GIKNSRRISSVVDSD 346 A++ + G Y+ ++ + R+ D Sbjct: 357 SCASLLLAHDVPMKAIQEWLGHSNFSITANLYSHLEYNAKVNSAETIARVLGGKSED 413 >gi|91786616|ref|YP_547568.1| phage integrase [Polaromonas sp. JS666] gi|91695841|gb|ABE42670.1| phage integrase [Polaromonas sp. JS666] Length = 331 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 45/292 (15%), Positives = 85/292 (29%), Gaps = 33/292 (11%) Query: 66 KKPTTLKWLISEYRKSA--HWGSLAVNSRISFESYFDQIIRKSGDF--------DYRKIT 115 + +TL I + +LA N+R S+ Q++ ++ Sbjct: 2 RDTSTLGPWIRRFLLEHLVSERNLAANTRRSYRDTMCQLLPFVSGRLHKAVDRLAVVDVS 61 Query: 116 TKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT--- 168 + +R R ++ Q L ++ L ++ I C V K Sbjct: 62 PQLVREFLSDVETHRGCGIATRNQRLAAIHALARFVGEHSPEHIAWCAQVRCVPYKKGTQ 121 Query: 169 ----EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 + + +G + FL +G R S++ V L + S+ Sbjct: 122 ASVPYLDKAEIDALLACPNRRTEQGGRDYALLLFLYNTGARASEASELIVGDLHLDQASV 181 Query: 225 KTQKTGTIITVELPD----GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280 G ++ L E F+N Q + A +A Sbjct: 182 DILGKGRKRRQCPLWPATVRELRALVGERSRHEHVFLNRCGQPTTRFGVHALVERTAARA 241 Query: 281 GV--------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 S H +R +A+ AG + + A G ++D Y + Sbjct: 242 KDFMPSLAMKRVSPHSIRHSTASHLLSAGVDINTVRAWLGHASLDTTNVYAE 293 >gi|71275473|ref|ZP_00651759.1| Phage integrase [Xylella fastidiosa Dixon] gi|71902062|ref|ZP_00684102.1| Phage integrase [Xylella fastidiosa Ann-1] gi|71163773|gb|EAO13489.1| Phage integrase [Xylella fastidiosa Dixon] gi|71728173|gb|EAO30364.1| Phage integrase [Xylella fastidiosa Ann-1] Length = 339 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 53/329 (16%), Positives = 100/329 (30%), Gaps = 23/329 (6%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 P + G + YY+ G R P + + L + Sbjct: 12 PRFRVRPQKSGVVYYYYDHGGKPRKETPLGRDYGLAIKRWAELEHAQITPAI-------A 64 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR 126 T + + YR A N++ +++ D + I +IR ++ R Sbjct: 65 VTFRHVAEHYRAEVIPTK-AYNTQRVEHRCLAPLLKFFDDPPAPFEAIKPVNIRQYLDWR 123 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + A + ++ L+ W + + +R R +D + Sbjct: 124 -TSKVIANREVSVFSHLWNW--ARSKGITDLPNPCGGIRRNKATGRDVYVDDTTYRAVYQ 180 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246 + R A + +G R SD +H+ N I KTG + + + L+ Sbjct: 181 AADQTLRDAMDLAYLTGQRVSDVVSMDERHIVNGALEICQAKTGAKLAITVTGELAVLIK 240 Query: 247 MTPIGKETFFINNDKQKM-------NATQFSIWFKAKATKAGVNK---SAHGVRKFSATI 296 K + + + + + T F AG+ K +R +AT Sbjct: 241 RIFDRKRGMKLRSTRLIVDAKGLELSRTGLRYRFDKARVAAGIAKEIFQFRDLRAKAATD 300 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKG 325 AD + A G +V E Y + Sbjct: 301 KADLAGDIRQAQAQLGHASVTMTEHYVRK 329 >gi|256850691|ref|ZP_05556116.1| Lj965 prophage integrase [Lactobacillus crispatus MV-1A-US] gi|256712559|gb|EEU27555.1| Lj965 prophage integrase [Lactobacillus crispatus MV-1A-US] Length = 379 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 58/357 (16%), Positives = 115/357 (32%), Gaps = 47/357 (13%) Query: 11 VTKERTRHGKIIYYFRK----GHGRRIRL--PYPHESTFIPAYMSALTGSTPKREYINSP 64 + + + GK Y F +G++++ A L + P + Sbjct: 12 IKPYKLKSGKKRYMFYIYLGQKNGQKVQTFRRGFKSYEEADAVYKQLAATNP----QDFV 67 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNS-RISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 ++K T+ L +E+ K + ++ + ++E Y I + G+ +TTK I Sbjct: 68 KQKQYTVDQLWNEWFKRY-VLDVKPSTAQKTYELYNLHIKPEFGESYVDSLTTKTISDYF 126 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 S + L ++AV E + NP S PK+ R + + Sbjct: 127 YSLAKEYKRYRTVFNYLHKLLEYAVDIELINRNPARSSLLPKKSAVKGRDTSHNFYTLDE 186 Query: 184 SFWSEGSQPRLAFEFLLY------SGLRCSDSCRAGVQHLQNNIFSIKTQKT-------- 229 + ++ + Y +G+R S++ +I Q+T Sbjct: 187 LKLFLDTAKEISDQVYFYFLILATTGIRKSEAIALHWSDFDYEHKTIHIQRTTAYKLKIK 246 Query: 230 -----------------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272 V + D ++ +N K + + Sbjct: 247 GNGEIETNDYGTQIPKGNETRIVPMSDLVYEISLHCRKDLNPLVFHNTKGDYYRSSKADK 306 Query: 273 FKAKATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKG 325 +K + + + HG+R ATI+ D G ++ G K++D TYT Sbjct: 307 WKKQIYEKNPNLKKITVHGLRHSFATIANDNGWNMVDVKNVLGHKSLDLTLGTYTHT 363 >gi|116255542|ref|YP_771375.1| putative phage integrase/recombinase [Rhizobium leguminosarum bv. viciae 3841] gi|115260190|emb|CAK03294.1| putative phage integrase/recombinase [Rhizobium leguminosarum bv. viciae 3841] Length = 331 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 39/311 (12%), Positives = 90/311 (28%), Gaps = 37/311 (11%) Query: 74 LISEYR--KSAHWGSLAVNSRISFESYFDQIIRKSG--------DFDYRKITTKHIRSGV 123 LI + + A +++ ++ S+ F ++ + D + + + + Sbjct: 8 LIERFFGQRLARQRNVSPHTIASYRDTFKLFLKFAHRRTGKFPSDLRLEDFDAELVVAFL 67 Query: 124 E----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK---TEGIRPWTK 176 + R +P++ LT++R F++ +E + K ++ T+ Sbjct: 68 DDLDSERHASPATYNLRLTAIRSFFRFLAFEEPAYSGQIQRILAIPGKIGSKREVQFLTR 127 Query: 177 EDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK---- 228 +++ S G + + + +G+R S+ + + Sbjct: 128 SEIEAILSAPDRRTWVGRRDYVLMLTAVQTGMRLSELVGLDRSAVTIGTGAHIRCFGKGR 187 Query: 229 --TGTIITVELPDGFMKLLAMTPIGKETF-FINNDKQKMNATQFSIWFKAKATKAGVNKS 285 T IT L L P+G F +M+ A S Sbjct: 188 KERTTPITRMLNVTLKAWLDEPPVGNGNALFPTVHGGRMSPDAVQYLLAKYVLTASKGCS 247 Query: 286 --------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNS 336 H +R +A DAG + + G ++ + Y + Sbjct: 248 SLRSKRISPHVLRHSAAMELLDAGVDSTVISLWLGHESTRSTQPYLHAHLAIKEAALAKI 307 Query: 337 RRISSVVDSDD 347 + Sbjct: 308 DPFNGQSPGRF 318 >gi|301062646|ref|ZP_07203274.1| site-specific recombinase, phage integrase family [delta proteobacterium NaphS2] gi|300443257|gb|EFK07394.1| site-specific recombinase, phage integrase family [delta proteobacterium NaphS2] Length = 359 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 48/337 (14%), Positives = 100/337 (29%), Gaps = 26/337 (7%) Query: 15 RTRHGKIIYYFR---KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 R + G +Y+ +G R L T A + + + R+ Sbjct: 6 RKKDGIKTWYYDFTLRGKRHRGWLKPTSAMTKRQASIRLRKLKAKILGDLPARRRTRIKG 65 Query: 72 KWLI-------SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 L EY K+ + E F + + Sbjct: 66 AALFKLIFNEYEEYLKTHKPR----SYYGRMEYMFSNFEFFTKKNAISAADISKYQKLRA 121 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK- 183 S+ + ++ + L F AV + +A+NP ++ + R T++++ +F Sbjct: 122 SQGVSGTTINRELNYCDAAFNRAVSRNMIAVNPFTGFDKFEELE-RTRFLTEDELVRFLR 180 Query: 184 ---SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-----V 235 + + + + +GLR + N+ I + Sbjct: 181 AAAYYEIQAPHLKAVVLTAILTGLRKRAILTLHKGEINFNLGLIIKFPGQASRNKRAGVI 240 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNA-TQFSIWFKAKATKAGV-NKSAHGVRKFS 293 +PD + +L ++ ++ + FK KAG+ + H +R Sbjct: 241 PIPDDLVDILKSRIEQSKSGYLFENPNTGQPMRDVKKSFKKALKKAGIEDFRFHDLRHTF 300 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 AT + + G K + + YT R + Sbjct: 301 ATYAMVKSKDIRGVQEILGHKNIQTTQKYTHVLAREK 337 >gi|282917374|ref|ZP_06325128.1| hypothetical protein SATG_02589 [Staphylococcus aureus subsp. aureus D139] gi|282318726|gb|EFB49082.1| hypothetical protein SATG_02589 [Staphylococcus aureus subsp. aureus D139] Length = 390 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 50/387 (12%), Positives = 102/387 (26%), Gaps = 56/387 (14%) Query: 14 ERTRHGKIIYYFRKGH----GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 R Y G G+ + A A R + Sbjct: 4 YEKRGNTWRYRISLGKDAETGKYKYISNSGFKRKSDAKHHAEMVERQLRN-GEYIAPSTS 62 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--K 127 T K + ++ S + + V+S + E I + + + I + V + Sbjct: 63 TFKQVADDWI-SQYANDVKVSSVRAREKAIHHAIERFNNKPIQTIKKHDYQRFVNDISIQ 121 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---- 183 ++ + +TS ++FK+A + + I P ++RPK+K E ++F Sbjct: 122 YSKNYVDSIVTSTNMIFKYAYDMKLIRIMPSEGIKRPKKKVSVEELEDTEIHKKFLEKDE 181 Query: 184 --------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF------------- 222 F L Y+G+R + + Sbjct: 182 LFQFLEIAKNHHSPQNSFEVFCTLAYTGMRAGELLALKWSDIDFENNTINITKTYYNPNN 241 Query: 223 ------------------SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264 ++ D + F + + + Sbjct: 242 NKKQYQILTPKTESSIGKIPVDPHVIKLLKNYKVDVQDTWKNELYVDNNFVFTDVNGYPL 301 Query: 265 NATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE- 320 + +W K K + S H R + +AG E+ K ++ Sbjct: 302 VIKKLQLWIKVILKKTDITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMN 361 Query: 321 TYTKGADR-IRLGIKNSRRISSVVDSD 346 Y K + + + ++ V D Sbjct: 362 IYAKITNSYKKDASQKFSKLMENVSKD 388 >gi|268610359|ref|ZP_06144086.1| phage integrase family protein [Ruminococcus flavefaciens FD-1] Length = 347 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 40/347 (11%), Positives = 91/347 (26%), Gaps = 34/347 (9%) Query: 1 MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60 M + +LP G ++ + + + A Sbjct: 1 MAKAKQLP---------SGSWRVQVYDKDLKK-TVSFTSKLPGKAGRNEAELMGREYLAG 50 Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 ++ T+ I EY L+ + + Y + D + IT + I+ Sbjct: 51 KKRKEEQGKTIGEAIDEYIA-LKENILSPTTINGYRKYRKTSLDGLCDILVKDITQQDIQ 109 Query: 121 SGVESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + +P S + + + + ++ K+ Sbjct: 110 AYINRLALTMSPKSIHNAHGLLSAVLSVYAPELRLRTTLPKVQKKIKQLPPVEDVL---- 165 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------NNIFSIKTQKTGTI 232 G++ L ++ LR S+ +Q + Sbjct: 166 ------KAIIGTEIELPCLLAMWCSLRMSEIRGLRRSDIQGNILTVQSTIVNVDGDHIEK 219 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMN---ATQFSIWFKAKATKAGV-NKSAHG 288 + + + ++ I + D++ + + F + G+ + S H Sbjct: 220 DSTKTLESTRQIRLSHYIISLINALPEDQEYITLIKDHALYMRFTRLLKREGIQHMSFHD 279 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIK 334 +R +A+I G M GW T + Y R Sbjct: 280 LRHMNASIMLALGIPDKYAMERGGWSTNSTLKNVYQHTFSAERKAAD 326 >gi|254714058|ref|ZP_05175869.1| Phage integrase [Brucella ceti M644/93/1] gi|254716885|ref|ZP_05178696.1| Phage integrase [Brucella ceti M13/05/1] Length = 303 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 50/276 (18%), Positives = 97/276 (35%), Gaps = 14/276 (5%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVES 125 + +I+ Y+ S + LA +++ ++ + D+I +K GD + IR Sbjct: 19 FRAVITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSIAQFDLPQKIRPVIRKWRGE 78 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 P +A + + + +AV ++ NPC +++ + WT +D+ + K+ Sbjct: 79 FADKPRTADYGMQVLSRVLSYAVDPLGKISQNPCEGIKQLYKNDRAAIIWTDQDIARLKT 138 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFM 242 + A + ++GLR D R H+ +N + + + L Sbjct: 139 KC--SPEVAWAVDLAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRHTKEAVIPLYAELR 196 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISAD 299 LL P N K F F +A + + H R +AT Sbjct: 197 ALLQTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLHFHDFRGTAATKFYI 256 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 AG + + GW+ + R I+ Sbjct: 257 AGLSERVIAEIMGWEEETVRNIIRRYVSR-TAAIEA 291 >gi|224538864|ref|ZP_03679403.1| hypothetical protein BACCELL_03760 [Bacteroides cellulosilyticus DSM 14838] gi|224519518|gb|EEF88623.1| hypothetical protein BACCELL_03760 [Bacteroides cellulosilyticus DSM 14838] Length = 330 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 33/276 (11%), Positives = 79/276 (28%), Gaps = 12/276 (4%) Query: 59 EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT--- 115 + + T L+ + + + + S Q+++K T Sbjct: 40 KDGERVHEDTATNDRLLEIFLSAKQVEGCTTPTIKYYSSTIKQLLKKMPKKVVDYSTEDI 99 Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 ++ K + + F W ++Y+ +P + + K T+ T Sbjct: 100 RAYLAVFQRKNKSSKVTIDNIRRIFSSFFAWLEEEDYIIKSPIRRIHKVKTGTQVKEILT 159 Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIIT 234 E+++ + + L +G+R + + + + N I K Sbjct: 160 DENIEH-LRDNCIKIRDLAMIDLLASTGMRVGELVKLDREDINFNERECIVFGKGNKERI 218 Query: 235 VELPDGFMKLLAMTPIGKETFFIN------NDKQKMNATQFSIWFKAKATKAGV-NKSAH 287 V L ++ ++ + + +A + H Sbjct: 219 VYFNARAKIHLQQYLSTRKDRNKALFVSLAKPHNRLQISGVETRLRKIGRQAKIVRVHPH 278 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 R+ AT++ D G ++ G +D Y Sbjct: 279 KFRRTLATMAIDKGMPVEQVQKLLGHVKIDTTMHYA 314 >gi|307710136|ref|ZP_07646580.1| phage integrase family protein [Streptococcus mitis SK564] gi|307619116|gb|EFN98248.1| phage integrase family protein [Streptococcus mitis SK564] Length = 387 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 48/371 (12%), Positives = 116/371 (31%), Gaps = 53/371 (14%) Query: 11 VTKERTRHGKIIYY------FRKGHGRRIRLPYP-HESTFIPAYMSALTGSTPKREYINS 63 + + + ++G +Y K G++I+ T + + Sbjct: 3 IAEIKKQNGSTVYRAKVYLGVDKLTGKKIKSNLTARTKTELKKKAQLAKAEFQNNGFTKK 62 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSG 122 T+ + + + +S ++ N++ S + + +I G + K+TT I+ Sbjct: 63 EIIPLTSYEEVAQLWWESYQ-HTVKPNTQDSVKRLLSNHVIPLFGSYRLDKLTTPTIQRI 121 Query: 123 VESRKHTPSSA--------IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 V + + + + ++AV + + +NP V P++ +G Sbjct: 122 VNQLALRANKREEGAFLHYDKIHALNKRILQYAVTMQIIDMNPAREVILPRKIKKGRNKV 181 Query: 175 TKEDMQQFKS----------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL------- 217 + + K ++FLL +G R +++ + Sbjct: 182 KHFNNLELKQFLSYLEEANLAIYRNIYEITLYKFLLATGCRINEALALHWSDIDLNNATV 241 Query: 218 ------QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI-----------NND 260 + + + T+++ +++L + + + Sbjct: 242 NITKTLNHLGEINSPKSEASYRTIDIDPQTIEVLKVYQKRQRQEAWKLGRTETVVFSDFI 301 Query: 261 KQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 + N S + AGV HG R A++ ++G EL G T+ Sbjct: 302 HKYPNNKTLSTRLNTRFKHAGVPNIGFHGFRHTHASLLLNSGIPYKELQHRLGHSTLAMT 361 Query: 320 E-TYTKGADRI 329 TY+ + Sbjct: 362 MDTYSHLSKEK 372 >gi|260431818|ref|ZP_05785789.1| integrase family protein [Silicibacter lacuscaerulensis ITI-1157] gi|260415646|gb|EEX08905.1| integrase family protein [Silicibacter lacuscaerulensis ITI-1157] Length = 367 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 37/347 (10%), Positives = 87/347 (25%), Gaps = 36/347 (10%) Query: 11 VTKERTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 + K G + + G+R +P Y+ L Y+ Sbjct: 4 IRKRTLPSGLVRWQVDFTDQAGKRRSKLFPRRKD-ADVYLVKLRSLVANNTYLADSES-- 60 Query: 69 TTLKWLISEYRKSAHWG-----SLAVNSRISFESYFD-QIIRK---SGDFDYRKITTKHI 119 T+ + + ++ + Y I GD ++T +H+ Sbjct: 61 ITVADAAKAWLDHCEVRCKTGRRMERSTLRGYSDYVRLHITDAQIGIGDKLIVQLTRRHV 120 Query: 120 RSGVESRKHTPSS---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + S + L+ ++++ A+ + N V K + Sbjct: 121 NEFRDRLLLNGRSEHLTRRALSVLKLILDHAIDNGQLFTNAAQGVRVIKSSRIDYKAPVP 180 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-------------NIFS 223 + + +G+R S+ Q + Sbjct: 181 SKETIRALIEAADDDFKPHLIVSALTGIRASEFRGLRWQDVDFEKGFIYVRQRADAYNQM 240 Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI-----WFKAKAT 278 + + + + L + + F+ Sbjct: 241 GEPKSRAGYRDIPAGPMVLNALRRWKLRCPKSDLGLVFPAPRGGVLQHTRTQARFRKLQE 300 Query: 279 KAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324 + GV H +R F+ ++ + G + E+M G ++ Y Sbjct: 301 QVGVKLRWHDLRHFAVSLWIEQGFSIKEVMTFAGHSSIQMTMERYGH 347 >gi|124515604|gb|EAY57114.1| putative phage integrase [Leptospirillum rubarum] Length = 358 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 49/354 (13%), Positives = 104/354 (29%), Gaps = 30/354 (8%) Query: 17 RHGKIIYYF-RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75 + G + + G + + A+ + +I+ + TTL + Sbjct: 6 KRGPYQWQVLIRRKGFETQARVFNTKAEAEAWAQVTESEMVRGVFISRKAAENTTLDEAL 65 Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ 135 Y S S + + K I K I + R + S A Sbjct: 66 DRY--SQEVSSKKKGAYQESRRIENLKRHKLAKRYLASIQGKDIAEYRDERLKSVSQASV 123 Query: 136 FL--TSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-GS 190 L + LF A+R+ + +NP + PK+ R + + ++ + E G Sbjct: 124 RLELALLSHLFNTAIREWGMNGILNPVTQIRLPKKAMSRDRRLFQGEEEKLLASCDEYGG 183 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVELPDGFMKLLAMT 248 L +G+R + ++ + K G V L +++L Sbjct: 184 DLPYVVRLALATGMRRGELASLTWDNVDLKKRTATLPETKNGEKRIVPLSQEAVRILRDL 243 Query: 249 PIGKETFFINNDKQKMNATQF-------SIWFKAKATKAGV--------NKSAHGVRKFS 293 P + T F ++ + + G+ + + H +R + Sbjct: 244 PRRFDGMVFGFVDSHSITTAFIRSVSRARSAYEKECAEKGIKPDPGFLVDLTFHDLRHEA 303 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347 + + G + G KT + YT + ++ + + Sbjct: 304 TSRFFELGLDTPFVKKITGHKTYQMLDRYTHL-----RAEDIAEKLDQLKNLKR 352 >gi|323136539|ref|ZP_08071621.1| integrase family protein [Methylocystis sp. ATCC 49242] gi|322398613|gb|EFY01133.1| integrase family protein [Methylocystis sp. ATCC 49242] Length = 419 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 39/326 (11%), Positives = 102/326 (31%), Gaps = 16/326 (4%) Query: 36 PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF 95 P + + + + + T+ L+ + + + + + Sbjct: 87 KDPAAEKREAKRQAKAEIAKQREAKRQAKTPQRETVAELVDGFLQRMS-RKASPKTVDAT 145 Query: 96 ESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHT-PSSAIQFLTSMRVLFKWAVRQEYV 153 + ++ G +++ +R+ +E P A + L+++R LF AV +E + Sbjct: 146 GRLLRREVVAAWGARPIAEVSRADVRALLECVGERAPVMANRLLSTVRRLFAHAVDEELI 205 Query: 154 AINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-WSEGSQPRLAFEFLLYSGLRCSDSCRA 212 A NP +E P +T R ++ + L+ + R S+ R Sbjct: 206 ARNPAAGIEPPHAETPRERVLDGRELASVWCAAERLDGEDGDFIRLLILTAARFSEVARL 265 Query: 213 GVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPI-GKETFFINNDKQKMNATQFS 270 + + + + L + + + + ++ Sbjct: 266 EWREVDLDNGVWTLPAARAKNRKAHVTPLSAPALRILQRLHAARVTDDGRVFRSSFSRIR 325 Query: 271 IWFKAKATK---AGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD---QAETYT 323 A+ + A + + + H +R+ +AT G AH + + Y Sbjct: 326 DRIDAEIARFDGAPLAHWTPHDLRRTAATNLQSLGVAAHVVEKLLNHASGTFRGIVSIYQ 385 Query: 324 KG--ADRIRLGIKNSRR-ISSVVDSD 346 + R ++ I+++ ++ Sbjct: 386 RHEYFAERRDALQALAAHIAALTGAN 411 >gi|331681924|ref|ZP_08382557.1| prophage DLP12 integrase (Prophage QSR' integrase) [Escherichia coli H299] gi|331081126|gb|EGI52291.1| prophage DLP12 integrase (Prophage QSR' integrase) [Escherichia coli H299] Length = 387 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 51/378 (13%), Positives = 112/378 (29%), Gaps = 56/378 (14%) Query: 17 RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76 R+ + G+RI+ A T + Sbjct: 6 RNEIWYASYSLPGGKRIKESL-GTKDKRQAQELHDKRKAELWRAEKLGDLPDVTFEEACL 64 Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS----- 131 + + S S +S + + + I+ I S V + + Sbjct: 65 RWLEEKADKK----SLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWK 120 Query: 132 ------------------------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167 + + L ++ + + A +++ + ++ P + Sbjct: 121 QKVQAAIRKGKEPPVYEPKPVSTQTKAKHLAMIKAILR-AAERDWKWLEKAPVIKIPAVR 179 Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFS 223 + +R KE+ ++ E + +F L +GLR S+ Q + + Sbjct: 180 NKRVRWLEKEEAKRLIDECPE--PLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVN 237 Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI------------ 271 + K+ I V L D K+L + + K A S Sbjct: 238 PEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKT 297 Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 + + +AG+ + H +R A+ +G L GW++++ Y A Sbjct: 298 SWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNH- 356 Query: 331 LGIKNSRRISSVVDSDDP 348 +++R+I + + P Sbjct: 357 -LTEHARKIDDIFGDNVP 373 >gi|257784371|ref|YP_003179588.1| integrase family protein [Atopobium parvulum DSM 20469] gi|257472878|gb|ACV50997.1| integrase family protein [Atopobium parvulum DSM 20469] Length = 391 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 53/376 (14%), Positives = 94/376 (25%), Gaps = 49/376 (13%) Query: 18 HGKI--IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75 +G Y + +I PY T + + + + K T L L+ Sbjct: 12 NGIWCCRLYLGRNLNGKIIQPYASFPTAKTQKEAEELATMWASHITSDGKVKSTQLTDLL 71 Query: 76 SEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134 EY + N+ E + I + G D R IT+ S + S Sbjct: 72 LEYVSIKRRNGASPNTTRQHEGFIRNHINGRLGKEDVRSITSSLFTSFEQDLLKKGLSRN 131 Query: 135 QFLTS---MRVLFKWAVRQEYVAINPCLSVERP-----------KRKTEGIRPWTKEDMQ 180 + +R + + V NP ++V +P + GI + Sbjct: 132 SVINLHQFLRGAYNYFVSAGICDYNPLINVAKPSREVHEAVSIEEWGFAGISTLINSRIT 191 Query: 181 QFKSFWSEGSQPRLAFEFL--LYSGLRCSDSCRAGVQHLQNNIFSIKT--------QKTG 230 S+ AF L +G+RC + C + I + Sbjct: 192 TAIQEDEFNSRVVCAFAAWLSLVTGMRCGEVCAIRYSDVNMLYKHIHVSGTVIEESYRKP 251 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQ------------------KMNATQFSIW 272 + +Q M T S Sbjct: 252 YRRESTKGKRSRNIAITDSDISFISDYMKLQQAHIAFVESSTPLISLDGSYMRPTSVSRS 311 Query: 273 FKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD-R 328 F + + + H +R A+ +G L G Y+ R Sbjct: 312 FTRMRRTLQLPQGITFHSLRHTHASWCLASGVDLKTLSERLGHADPATTLRIYSHLLPGR 371 Query: 329 IRLGIKNSRRISSVVD 344 R + ++ Sbjct: 372 DRGAAEAFGDALRTIE 387 >gi|167465306|ref|ZP_02330395.1| DNA integration/recombination/invertion protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 411 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 42/342 (12%), Positives = 106/342 (30%), Gaps = 54/342 (15%) Query: 57 KREYINSPRKKPTTLKWLIS-EY--RKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYR 112 + E + TL+ I E+ + ++ +L+ + ++ + + +II G + Sbjct: 63 EAEAGEYIAPQKMTLRQFIESEWDPKYASKTENLSPLTYQTYMHFIESRIIPVFGHKNLE 122 Query: 113 KITTKHIRSGVESRKH------------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 I T HI + + +P + ++ +F A + + NP + Sbjct: 123 DIRTLHIVTFINDLSKPGVRKDRRDDTLSPGTIQYIHRVLKNIFNRATEWQLIKTNPIVG 182 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGS-QPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219 V++PK + + +++ ++ + ++ + RL + G R + + Sbjct: 183 VKKPKVEQTEFDFYDEDEAREVIAALNKEPRRWRLFILGSMVGGFRRGELLALEWADVDF 242 Query: 220 NIF------------------SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261 + K+ + +L K+ DK Sbjct: 243 DNMTLSINKSISLTVDGRAVEKDPKSKSSKRVVDMPEWYMQELKVHEREWKKEKLFMGDK 302 Query: 262 Q---------------KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAH 305 T + W+++ ++ + H +R SAT+ +AGA Sbjct: 303 WLGGDRQYVFHAGYGKPFFHTTPTKWWRSFISRNKLKYIRLHDLRHSSATLLIEAGAPMK 362 Query: 306 ELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVVDSD 346 + G Y ++ + + ++ Sbjct: 363 AIQKRLGHSKHQTTADIYAHVT--KKVSRDTAEKFDKFAPNN 402 >gi|15088744|ref|NP_150133.1| integrase [Streptococcus phage MM1] gi|15074890|emb|CAC48067.1| integrase [Streptococcus phage MM1] Length = 375 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 42/373 (11%), Positives = 117/373 (31%), Gaps = 52/373 (13%) Query: 18 HGKIIYYFRKGH---GRRIRLPYPHESTFIPAY-MSALTGSTPKREYINSPRKKPTTLKW 73 +GK ++ R + ++ E A +A+ + +++ + + T + Sbjct: 8 NGKYKFFERYKDPYTEKLKKVSVTMEKKTPQARNQAAILLQEKINKKLSTKQVESITFEE 67 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESRKHTPS- 131 + + + KS ++ +++ + +S ++ D + + ++ +E + Sbjct: 68 IYNLFYKSW-AQTVKESTKHNCKSVDKKMKEVIPSDTILANLDRRFLQEAIEKIIESNGY 126 Query: 132 -SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ--QFKSFWSE 188 +A + +R +F +AV+ Y+ N P++ K + + Sbjct: 127 ITAKKVRHRLRGIFNYAVQYSYIENNEVDYTTIPQKPKTLEELEKKRNNFLTMQEIKALV 186 Query: 189 GSQPRLAFEFLL--------YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------- 232 R + +G+R + ++++ I+ Sbjct: 187 DVLNRREYHQKYADMVLVLTLTGMRYGELTALQLKNIDFETNKIEITGNFDSVNKIKTLP 246 Query: 233 ------ITVELPDGFMKLLAMTPIG-----------KETFFINNDKQKMNATQFSIWFKA 275 T+++ + ++ + + F Q F K Sbjct: 247 KTTNSIRTIKVSESVIEAIQRQIVRLSERFQPLSSDDYIFCFEKWNQPTTIACFIQILKK 306 Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLG 332 +A + K S+H R + A++G +M G E Y+ + Sbjct: 307 YGKQAKIEKNLSSHIFRHSHISFLAESGLPIKSIMDRVGHSNAKMTLEIYSHTTE----- 361 Query: 333 IKNSRRISSVVDS 345 ++ + +D+ Sbjct: 362 -DMEDKLVNKLDT 373 >gi|323700549|ref|ZP_08112461.1| integrase family protein [Desulfovibrio sp. ND132] gi|323460481|gb|EGB16346.1| integrase family protein [Desulfovibrio desulfuricans ND132] Length = 340 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 42/332 (12%), Positives = 93/332 (28%), Gaps = 11/332 (3%) Query: 16 TRHGKIIYYFRKGHGRRIRLPYPH-ESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 T+ G+ +R H + + Y + A + R L L Sbjct: 6 TKDGRWFVQYRVAHSKSPKKEYYGKGTEAKKAAHERNAEINLMKARKEEIRTGHIYLDEL 65 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132 Y + + + K+ + +PSS Sbjct: 66 GQIYLNHEKARGRERKFLTEMANRLNNSYLPALNHAPIHKLKAEDFNVLALEYADLSPSS 125 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 +++T + V+F + V EY+ NP + + K E R + Sbjct: 126 FNRYITYLNVMFNFGVEFEYIEKNPMAAWRKRVLKREKHRDLPIDKDDIDAILAHSPLHV 185 Query: 193 RLAFEFLLYSGLRCSDS--CRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250 A ++ +G R S + + + ++ + T + +L Sbjct: 186 YKAIRLIMKTGCRPGKSELLKIKYSDVDFHNKLVRIRGTKAARSDRYVHLLDDILEEIRE 245 Query: 251 GKET--FFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHE 306 ++T + + + F+ +G++K + +R + A+ A Sbjct: 246 WQKTATSEYIVEYKGEPVQSYIKAFRTAVKNSGIDKKVVPYHLRHYFASSLIAKKADIKA 305 Query: 307 LMATYGWKTVDQA-ETYTKGA-DRIRLGIKNS 336 + + G Y D + I+ Sbjct: 306 VASVMGHSGPAMLFNVYYHLIGDGEKEAIEKL 337 >gi|212702736|ref|ZP_03310864.1| hypothetical protein DESPIG_00764 [Desulfovibrio piger ATCC 29098] gi|212673793|gb|EEB34276.1| hypothetical protein DESPIG_00764 [Desulfovibrio piger ATCC 29098] Length = 350 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 47/354 (13%), Positives = 110/354 (31%), Gaps = 26/354 (7%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPK--------REYINSPR 65 E+ R K + +R R R + A+ + + + R+ Sbjct: 2 EKDRLEKWRFSWRDPATGRTRRRTFTSESERDAFAATMRQVIERERQLKKQARQRSARIS 61 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 + T++ +I Y + ++ + + ++ G R +T + + + E+ Sbjct: 62 AQSLTVREIIQLYLELQITR---PGTKKATAYHCRPLLAMFGTRKARMLTMQDVLAFREA 118 Query: 126 ---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 R+ S+ L +R +WAV +A NP ++ P+ ++ P T + ++ Sbjct: 119 QALRQVGLSTVRLRLGILRSALRWAVTTGRLAANPLDGMKLPRVRSRRASPPTAAEGRKM 178 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-----ITVEL 237 + + +A + S+ R + + + V L Sbjct: 179 MEVAAPHIRRIIAIGMYCGPRIGPSELFRLRWADVDLDAAQLNMPSASKADGPDGRFVPL 238 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNA--TQFSIWFKAKATKAGVNKS--AHGVRKFS 293 + L+ + + AG+ + + +R Sbjct: 239 RGDLVALMRRWQDEDSAIGCPWVIHYHGRPVKSVGAAWHSARRAAGIQRRIVPYSLRHAF 298 Query: 294 ATISADAGATAHELMATYGWKTVDQ-AETYTKGADRIRLGIKNSRRISSVVDSD 346 T++ + GA L G + E Y L +R+ S++ + Sbjct: 299 PTMALEHGADIGSLAEIMGHTSKSMILEHYQHVT--AHLKRDAVQRLPSILPEE 350 >gi|325856041|ref|ZP_08171930.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] gi|325483713|gb|EGC86677.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] Length = 407 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 37/310 (11%), Positives = 86/310 (27%), Gaps = 23/310 (7%) Query: 54 STPKREYINSPRKKPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKSG--- 107 +E + T L ++ + S++ + +E Sbjct: 92 LERIKEEFLGKKGDIDTFMALFEKHNEDFRKQVGVSVSATTLRKYELCKRHFAEFLKQKY 151 Query: 108 ---DFDYRKITTKHIRSGVESRKHTPS----SAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 D ++T I + +A + + + + R+ V + + Sbjct: 152 SRTDIKLCELTYTVIYDFDLYLQTAAGQCRNTATKTMKIFKTI-TILGRKLGVLHHDPFA 210 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHL 217 + T E++ + + + R F F ++GL D +HL Sbjct: 211 NYHFHLEFVDRGFLTDEEILKIVNKKLTIPRLSLVRDIFIFSCFTGLSYIDVANLTPEHL 270 Query: 218 QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--NATQFSIWFKA 275 N VE + + + K + + + + K Sbjct: 271 VNMDDKQWIMTKRQKTNVESNILLLDIPKQIIAKYSNKTYRDSKLFPVLSNQKMNAYLKE 330 Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI--RL 331 A + K + H R AT+S G + G + + Y + ++ Sbjct: 331 IADICDIGKNLTFHMARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKIEHD 390 Query: 332 GIKNSRRISS 341 + + ++S Sbjct: 391 MEELAGKLSK 400 >gi|293602012|ref|ZP_06684467.1| phage integrase family site-specific recombinase [Achromobacter piechaudii ATCC 43553] gi|292819542|gb|EFF78568.1| phage integrase family site-specific recombinase [Achromobacter piechaudii ATCC 43553] Length = 372 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 51/355 (14%), Positives = 104/355 (29%), Gaps = 34/355 (9%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 +T G RK + + YI + T++ Sbjct: 6 KTSSGTWKALIRKTGWPA-TAKTFRTKRDAEDWARRTEDEMVRGVYIQRAPAERMTVEAA 64 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-------- 126 ++ Y K +++ IIR G + + + + + R Sbjct: 65 LTRYLKEVTPTK-RESTQAGEHKKAQVIIRHLGKYSLAALNAEIVAQFRDMRLAGDPDKK 123 Query: 127 -KHTPSSAIQF---LTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQ 180 K P S L + LF A+++ + NP ++ RP + R T E+ Sbjct: 124 GKLRPRSNNTVRLELALLGHLFTVAIKEWGIGLPFNPVSNIRRPAPGSGRNRRLTSEEQT 183 Query: 181 QFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHL----------QNNIFSIKTQK 228 + + S P + + +G+R S+ ++ + S +T Sbjct: 184 RLLQAVDKHSNPMFGWIVRIAVQTGMRLSEIATLRIRQVDIERRVVRLEHTKNSSPRTVP 243 Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAH 287 T + L F F + AG+ + H Sbjct: 244 LTAEATRVFTEALANPLRPAETELVFFGEPGRDGIRRPYLFDKAWTDAKRAAGLEDFRFH 303 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342 +R + + +AG + E+ A G K++ + YT +++ + Sbjct: 304 DLRHEAVSRFVEAGLSDQEVSAISGHKSMQMLKRYTHL-----RAEDLVQKLDRI 353 >gi|260655773|ref|ZP_05861242.1| tyrosine recombinase XerD [Jonquetella anthropi E3_33 E1] gi|260629389|gb|EEX47583.1| tyrosine recombinase XerD [Jonquetella anthropi E3_33 E1] Length = 308 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 31/274 (11%), Positives = 71/274 (25%), Gaps = 24/274 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRKH 128 ++ + + ++ S+ + TT + + + Sbjct: 9 ADDFADYLRFERQSSDHTVRSYARALAKWRSWCETSGADPMSPDDATTPRFIAAMREQDL 68 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-- 186 S+ Q + ++R ++ A + P + + + ++ + Sbjct: 69 ASSTVQQTMAALRSWVRYRQSTGSAAASALRLPALPDKPRRLPQVLSDGEIDRLLESCSG 128 Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMK 243 + R + L GLR S+ C + + + K +V Sbjct: 129 ESWMDVRDRTILQILADCGLRASEICSLTLASVDMDTRFLHVRGKGNKDRSVPFGASVAD 188 Query: 244 LLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGV---NKSAHGVR 290 L + ++ + + +AGV H +R Sbjct: 189 WLTKWLAVRADGHPTGGARSFLFASRTGDRLTRIDLWRLIRRRGERAGVAKARLHPHVLR 248 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324 AT G L G ++ E YT Sbjct: 249 HSVATRLLRRGMDLRTLQEFLGHSSIGTTEKYTH 282 >gi|330812148|ref|YP_004356610.1| putative phage integrase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327380256|gb|AEA71606.1| putative phage integrase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 377 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 49/353 (13%), Positives = 114/353 (32%), Gaps = 31/353 (8%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 +T G RK + + YI + TL+ Sbjct: 27 KTPAGTWKAVIRKTGWP-TNAKTFRTKRDAEDWSRRTEDEMVRGVYIQRSGSERLTLEKA 85 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-------- 126 + +Y + ++ + + Q+IR G + ++++ I + ++R Sbjct: 86 LQQYLREVSPTK-KPTTQRAEATKAQQLIRHLGKYSLAALSSEVIANYRDTRLGSLTNRG 144 Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + ++ L + LF A+++ + NP L++ +P R + E+ ++ Sbjct: 145 NPTSNNTVRLELALLSHLFTVAIQEWGLGLTFNPVLNIRKPSPGEGRDRRLSPEEERRLL 204 Query: 184 SFWSEGSQPRLAFEFL--LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------IITV 235 + + S P L + L +G+R S+ + ++ T ++ Sbjct: 205 AAVNNHSNPMLGWIVRIALETGMRSSEITGLRRHQIDLKRRVVRLSDTKNDSARTVPLSR 264 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQ----KMNATQFSIWFKAKATKAGVN-KSAHGVR 290 F L ++ + + K F+ + K G+ H +R Sbjct: 265 LATVTFQAALENPTRPQDCDLVFFGEPGKDGKRRPYAFTKVWGVLKKKFGMPDLRFHDLR 324 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343 + + + G + E+ A G K++ + YT R+ + Sbjct: 325 HEAVSRFVEGGLSDQEVSAISGHKSMQMLKRYTHL-----RAEDLVGRLDRIK 372 >gi|265763426|ref|ZP_06091994.1| transposase [Bacteroides sp. 2_1_16] gi|263256034|gb|EEZ27380.1| transposase [Bacteroides sp. 2_1_16] Length = 308 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 36/301 (11%), Positives = 91/301 (30%), Gaps = 33/301 (10%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGD-FDYRKITTKHIRSGVESRK 127 T++ + +++ + ++ ++ + I+ G+ + + + Sbjct: 5 TIREISVAWKEYKQPY-VKQSTMAAYVLILENHILPNFGESYALHEQAVQDFVLRKIENG 63 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + S L ++++ K+ V+ E++ T+ + + + ++ S Sbjct: 64 MSVKSVKDILIVLKMVMKFGVKNEWMDYQEWDIKYPSPSITKELEVLSVANHKKILSHIQ 123 Query: 188 EG-SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246 S L L +GLR + C + + +I +T I + L Sbjct: 124 SHFSFAGLGIYISLCTGLRIGEVCALKWSDINVSEGTITVNRTIERIYIINGMEKHTELV 183 Query: 247 MTPIGKETFFI--------------------------NNDKQKMNATQFSIWFKAKATKA 280 + + ND+ + ++ K Sbjct: 184 INTPKTQNSCREIPITKELLAMVKPLKKVVNEEFYVLTNDEYPTEPRTYRNYYGKLMAKL 243 Query: 281 GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLGIKNSR 337 G+ K HG+R AT +AG + G + + Y ++ + I Sbjct: 244 GIPKLKYHGLRHSFATRCIEAGCDYKTVSVLLGHSNISTTLDLYVHPNMEQKKRCIAKVF 303 Query: 338 R 338 + Sbjct: 304 K 304 >gi|227499698|ref|ZP_03929801.1| possible phage integrase [Anaerococcus tetradius ATCC 35098] gi|227218295|gb|EEI83554.1| possible phage integrase [Anaerococcus tetradius ATCC 35098] Length = 362 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 43/347 (12%), Positives = 93/347 (26%), Gaps = 29/347 (8%) Query: 11 VTKERTRHGKIIYYFRKGHGRRIRLP---YPHESTFIPAYMSALTGSTPKREYINSPRKK 67 + T+ GK Y F G+ + F + + + P K Sbjct: 3 IYSY-TKDGKTYYKFNIYLGKDPLTGKEIRTNRQGFKSKKQAENAYLKLRTQTPTKPEIK 61 Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127 T + ++ + + +QI GD ++ T ++ + Sbjct: 62 IKTFNDAYEIWLETWQTTVKDQSVYKIKSLFKNQITPYIGDILLKEFTQLQAQTFIIDAS 121 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + + + +A + NP ++ PK+K E + + Sbjct: 122 KRYKNISSINIYTKAVLNYAKDLHAIETNPFAKIKIPKQKREIKTIENRNYYTPEELKTF 181 Query: 188 EG-------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------- 232 Q F L ++G+R ++ L ++ K+ + Sbjct: 182 LEITKETQQPQTYAFFRLLSHTGMRLGEALALEWTDLNTKTNTLTISKSISRDKDGKQII 241 Query: 233 --------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284 + L L + + + + + K ++K Sbjct: 242 STTKTGNTRKITLDRETTDTLIKLKKTNKKYIFERSGKMITRSYPLKILNRIIEKNNLHK 301 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRI 329 + HG R ATI G + + G E Y+ + Sbjct: 302 ITVHGFRHTHATILLRMGKSIKYIQERLGHADPTITLEIYSHIMEEE 348 >gi|282877198|ref|ZP_06286036.1| site-specific recombinase, phage integrase family [Prevotella buccalis ATCC 35310] gi|281300690|gb|EFA93021.1| site-specific recombinase, phage integrase family [Prevotella buccalis ATCC 35310] Length = 410 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 36/269 (13%), Positives = 86/269 (31%), Gaps = 22/269 (8%) Query: 80 KSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVESRK----HT 129 + A+ + +ES + D +I + +R+ K Sbjct: 125 RELVGKDYALITVRRYESCKRYLAELIKLKYDKEDLPLSEINGELVRAFEFYLKTEKECQ 184 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE---DMQQFKSFW 186 ++ I+++ ++ + A+ E++ +P + ++ K T + + + Sbjct: 185 QNTVIRYMKCLKKITNLALANEWITKDPFIGIKF-HEKEVIREFLTMDELLTIYNKEFSL 243 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF----- 241 + R F F ++GL D + +H+ + + T + + Sbjct: 244 DRITVVRDVFTFAAFTGLAFIDVQQLSAEHIVQDNNGNYWIRKPRQKTKNMCNIPLLDIP 303 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI-SA 298 M++L N + + + K A G++K + H R AT Sbjct: 304 MQILEKYKSHPTCQKKNVLLPVPCNQKMNSYLKEIADLCGISKCLTTHTARHSYATSVCL 363 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGAD 327 G + + G + + Y + D Sbjct: 364 ANGVSIENVAKMLGHSNIKMTQHYARVLD 392 >gi|218295372|ref|ZP_03496185.1| integrase family protein [Thermus aquaticus Y51MC23] gi|218244004|gb|EED10530.1| integrase family protein [Thermus aquaticus Y51MC23] Length = 313 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 40/275 (14%), Positives = 87/275 (31%), Gaps = 20/275 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144 + + R + +R+ + + P FL ++R + Sbjct: 42 RGYSPRGVRRYLQDLALWFRFLEARALPP-GPEAVRAILLEERWAPRRVQGFLAALRSYY 100 Query: 145 KWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF---EFLL 200 ++ + + +P + RPK E++ +F ++ + RL FL Sbjct: 101 RYLAQVRGEAVADPTEGIGRPKAGRRLPLHPAPEELLRFLEALAQEKEARLLTALARFLY 160 Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKT----GTIITVELPDGFMKLL------AMTPI 250 +GLR S++ +++ + V L L Sbjct: 161 GTGLRISEALSLKGKNIVQEGGRPVAVRVVGKGNKERLVPLSRTAQSALLELGPPQGNVN 220 Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHEL 307 + +A F+ A +AG++ + H +R AT + G + Sbjct: 221 VFTFAQGRYRGRVPSARYVEAKFREAALRAGLDPRRFTPHKLRHAYATFLVERGVQLDAV 280 Query: 308 MATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342 G +++ + Y A R RL + + R+ + Sbjct: 281 KDLLGHESIATTQIYLH-ASRERL-KEAASRLPDL 313 >gi|148807459|gb|ABR13530.1| site-specific recombinase [Pseudomonas aeruginosa] Length = 373 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 51/368 (13%), Positives = 112/368 (30%), Gaps = 38/368 (10%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 +T G RK + + + Y+ + TTL+ Sbjct: 8 KTPSGTWKAVIRKQGWP-TASKTFRTKRDADDWARSTEDEMVRGVYLRRSPSEKTTLEKA 66 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-------- 126 + Y + +++ + ++ +IR G + ++ I + R Sbjct: 67 LGRYLEEVTPTK-KASTQKAEQTKAAPLIRHLGKYSLAALSADVIAEYRDKRLKETVRTK 125 Query: 127 ----------KHTPSSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPW 174 + ++ L + LF A+++ + NP L++ +P R Sbjct: 126 YKEGSDVTPRTVSANTVRLELALLSNLFTVAIQEWRIGLPQNPVLNIRKPSPGEGRDRRL 185 Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIK--TQKTG 230 ++ ++ + P L + + +G+R S+ + +K K G Sbjct: 186 NPDEERKLFQAVNAYHNPMLGWIVRIAVETGMRSSEITSLRRHQVDLKKRVVKLLDTKNG 245 Query: 231 TIITVELPDGFMKL--------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 TV L + + F +K FS + + G+ Sbjct: 246 ESRTVPLTQAAAQAFKDALENPIRPIDTNLIFFGEPGKDEKRRPYVFSKVWNEMKKRLGM 305 Query: 283 -NKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 + H +R + + ++G T ++ A G K++ + YT R + I Sbjct: 306 TDLRFHDLRHEAVSRLVESGQLTDQQVAAISGHKSMQMLKRYTHL--RAEDLVTALDNID 363 Query: 341 SVVDSDDP 348 P Sbjct: 364 QSRQGSRP 371 >gi|327439330|dbj|BAK15695.1| integrase [Solibacillus silvestris StLB046] Length = 380 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 39/358 (10%), Positives = 94/358 (26%), Gaps = 45/358 (12%) Query: 16 TRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 R Y ++ G+ L T A +A T E + KK Sbjct: 8 KRGQSWQYTVSYKDKDGKHKTLRKSGFKTKTEAKNAATLVETEILEGNIAILKKQP-FHA 66 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PS 131 + + + + ++++ +I GD IT + + + Sbjct: 67 YFHRWYTTFK-KDYSKTTIAAYKATESKIANFFGDKAIHNITRFEYQEFISKLGESLNHG 125 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCL-----SVERPKRKTEGIRPWTKEDMQQFKSFW 186 + + +R A+ + + + + K + + I + + ++ Sbjct: 126 TVSKTHKHIRACVTDALEDDLLKKDFTRKVIVSGIAPKKHEEKFINYSDSQKLLKYLVDN 185 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV----------- 235 E L +G+R ++ I K Sbjct: 186 IELGLENYMLILALTTGMRYAEILALQWTDFDFINGCITVNKQLEYKHQELTTNVLKNAS 245 Query: 236 --------------------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275 + + F+ N+ + + + + ++ Sbjct: 246 KFSLYKVSRTITLDKFTLELFEDLKNNESYIIDNHLNIIFYKNDIGKIITNDRINDVLRS 305 Query: 276 KATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330 + ++ S HG+R A+I + + G +D TY+ +R Sbjct: 306 ILKRLNISPVISFHGLRHTHASILLYQRVSIVYISERLGHNNLDTTIGTYSHLVSELR 363 >gi|310826778|ref|YP_003959135.1| integrase [Eubacterium limosum KIST612] gi|308738512|gb|ADO36172.1| integrase [Eubacterium limosum KIST612] Length = 336 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 38/291 (13%), Positives = 99/291 (34%), Gaps = 39/291 (13%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKH--TP 130 L ++ +S L ++ ++ ++ + G+ + I+ + I+ V + + Sbjct: 20 LFDKWLESK--NHLKAQTKRTYVQLINRYLRPVFGEKSVKTISEEDIQRFVSDIQKDLSA 77 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 + + +R +F+ A+ + + NPC P+++ + + +D ++ ++ + S Sbjct: 78 KTVHEVYRCLRAVFELAIENKIIERNPCEKTVLPQKEKVKAKALSIKDQEKIENALGQSS 137 Query: 191 QPR-LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249 + +A L GLR S+ Q ++ N + + + + + + L Sbjct: 138 KALDIAILLALNLGLRLSEVIALRWQDIRFNENIVIIRHSMERVPTGDGNKTVAHLGTPK 197 Query: 250 IGKETFFINNDKQK------------------------------MNATQFSIWFKAKATK 279 I + + N FK + + Sbjct: 198 TQSSQRKIPLEFEFSKCLKEYFQKQTSVQKKPDAFVVGKKDGNSYNGRTVERHFKKRLKE 257 Query: 280 AGV--NKSAHGVRKFSATISADAGATAHELMATYGWK-TVDQAETYTKGAD 327 + + H +R AT + ++G + A G T + Y ++ Sbjct: 258 LMISETYTFHSLRHSFATRAMESGVVIKVISALLGHSQTATTTDIYLHLSE 308 >gi|294507521|ref|YP_003571579.1| Tyrosine recombinase xerD [Salinibacter ruber M8] gi|294343849|emb|CBH24627.1| Tyrosine recombinase xerD [Salinibacter ruber M8] Length = 360 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 46/298 (15%), Positives = 90/298 (30%), Gaps = 52/298 (17%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPS 131 L+ + + ++ + F+Q + D R +T H++ E K + S Sbjct: 51 LVRRWLAEK-----SARTQEEYARDFEQFVEFV-DLPLRYVTLGHLQEYREHLKDGYARS 104 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 S + L++++ LF + + Y A N ++ P + + E + Sbjct: 105 SQKRKLSAVKSLFTFGTKLRYFAHNVGAALSTPSVRNDRAERILSEADLWALLRDERDLR 164 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-----------FSIKTQKTGTIITVELPDG 240 + SG R SD + L++ K G V L Sbjct: 165 NHVLLRLFYASGGRISDVEDLRWRDLKDRPDLNGPDGRPGGQVTFFGKGGKTRAVTLYSK 224 Query: 241 FMKLLAMTPIGKETFFINNDKQKM---------NATQFSIWFKAKATKAGVNKS------ 285 L+ +E+ + + +Q K A +AGV + Sbjct: 225 VWSLIIRLRENEESEGHGAADDPVFRSQKGGCLSRSQIWRVVKKAAVRAGVKLTEKTGPE 284 Query: 286 ------------------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 H R A+ + GA + T G ++++ +TY Sbjct: 285 GAVKRDEEGEPIMTSEVSPHWFRHAHASHALQKGADLELVRETLGHESIETTKTYLHA 342 >gi|116492513|ref|YP_804248.1| integrase [Pediococcus pentosaceus ATCC 25745] gi|116102663|gb|ABJ67806.1| Integrase [Pediococcus pentosaceus ATCC 25745] Length = 379 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 32/351 (9%), Positives = 92/351 (26%), Gaps = 32/351 (9%) Query: 17 RHGKI----IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 ++G +Y G R + L + + + T Sbjct: 7 KNGTYEVSISWYDSLGKRRTKSKRGFKTKPEAVLGEAKLRLEYEEVS-VREKVDQQDTFA 65 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTP 130 + ++ + ++ ++ I G+ + IT + + + H+P Sbjct: 66 EYFKNWYIFYKKPKVSKVTLNRYQYTYNVINEYFGNKLLKDITRANYQKFIVKYGQNHSP 125 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE--GIRPWTKEDMQQFKSFWSE 188 ++ ++ K AV E + + ++E + + +++ + Sbjct: 126 NTMKMINNCIKACVKNAVYDEEIKKDFTYNIELISNRDNVVQVEYLNVAEIKALLNSTIS 185 Query: 189 GSQPRL----AFEFLLYSGLRCSDSCRAGV--------------QHLQNNIFSIKTQKTG 230 PR + +G R S+ + T+ Sbjct: 186 KLNPRYTSNYMIVTAILTGARLSEIAGLTWNDINFNFNTININKSYDYFAKSFKPTKNKS 245 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQ-KMNATQFSIWFKAKATKAGVNKS---A 286 + +++ + +L N + + + +A+ + +N+ Sbjct: 246 SNRIIKINNTLCDVLKELRTNNTDLVFKNKRGLIPTSNAVNKALRARLEELNINRRNFHF 305 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKGADRIRLGIKNS 336 H +R G + + G + Y + + Sbjct: 306 HSLRHSHVAFLLSQGIDIYPIAQRLGHSDITTTTRTYAYLIEEYKDKNDAI 356 >gi|114799242|ref|YP_759022.1| phage integrase family site specific recombinase [Hyphomonas neptunium ATCC 15444] gi|114739416|gb|ABI77541.1| site-specific recombinase, phage integrase family [Hyphomonas neptunium ATCC 15444] Length = 353 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 44/337 (13%), Positives = 102/337 (30%), Gaps = 30/337 (8%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT-TLK 72 R G+ R+ GR + + + + + E ++ T Sbjct: 5 YRMPKGQWRAQVRRK-GRYVSQCFVRRKD-AEEWALKMERRVDRGESVSKNIPDDLSTFA 62 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---T 129 LI + A+ R S D++ K G + + I R+ Sbjct: 63 QLIDLHIADMLEVGKAL--RRSKTYSLDKLKGKLGHVRLEVLDRERIIQFARDRRTEGAG 120 Query: 130 PSSAIQFLTSMRVLFKW---------AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 P + ++ ++ + + Q +A + + E R T+E++ Sbjct: 121 PPTISADISYIKTVLLHASAVHGLPVSPDQVDLARVALKRLGLVGKAQERDRRPTQEELD 180 Query: 181 QFKSFWSEGSQPRLAFE----FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 Q +++ S+ + F + + +R S+ C + ++ + + Sbjct: 181 QLLAYFEGNSRQKSPMARLVTFAVATAMRQSEICSIEWPDVDERRRTVTVRDRKDPRQKD 240 Query: 237 LPDGFMKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKAGV-NKSAH 287 D + L+ +T + + N F+ + G+ + H Sbjct: 241 GNDQRVPLVDLTGYDAWDILMAQRRSTTNKGRVFPYNPRSIGTAFRRACVELGIEDLHFH 300 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R + +AG ++ G K + YT Sbjct: 301 DLRHEGTSRLFEAGLQIEQVALVTGHKDWKMLKRYTH 337 >gi|285017063|ref|YP_003374774.1| phage integrase [Xanthomonas albilineans GPE PC73] gi|283472281|emb|CBA14787.1| putative phage integrase protein [Xanthomonas albilineans] Length = 347 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 41/323 (12%), Positives = 83/323 (25%), Gaps = 23/323 (7%) Query: 16 TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75 R K R + A A R P+ + TL LI Sbjct: 19 KRGKKWRALVRLKGHPTASKTFNGRK---AAEDWARAAEDALRGGTALPQ-ESITLSALI 74 Query: 76 SEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134 Y K + ++ + + GD + +T + I + + RK P++ Sbjct: 75 DRYVKEMSKFRPVS----ATKRGNLKRWEESLGDREVASLTGQDILTHIGQRKAGPATMT 130 Query: 135 QFLTSM-------RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 L + R L+ + + P L K + + Sbjct: 131 MELGFLGEVLAAGRSLWGMTIPDVVASSRPVLRRAGAIAKPVERDRRPTGKELDDLAAFF 190 Query: 188 E----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 R F + S +R + + ++ + + + Sbjct: 191 RFNLGAIPMRDLIPFAIDSAMRMGEIVALRWEDYRSGDKPTIQIRDRKDPMDKRGNNQWV 250 Query: 244 LL--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADA 300 L I + F+ + + + H +R A+ + Sbjct: 251 PLLGQTVEIIERQQRAGPLIFPYKPDSIGAAFRRACMRLQIEDLHFHDLRHEGASRLFER 310 Query: 301 GATAHELMATYGWKTVDQAETYT 323 G + E+ G + + YT Sbjct: 311 GYSIPEVAIVTGHRDWKSLKRYT 333 >gi|260655607|ref|ZP_05861093.1| xylulose-5-phosphate/fructose-6-phosphate phosphoketolase [Jonquetella anthropi E3_33 E1] gi|260629660|gb|EEX47854.1| xylulose-5-phosphate/fructose-6-phosphate phosphoketolase [Jonquetella anthropi E3_33 E1] Length = 391 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 46/356 (12%), Positives = 99/356 (27%), Gaps = 38/356 (10%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSA---------LTGSTPKREYINSP 64 +H + Y +G R++R +T++ + + +E + Sbjct: 33 RIGKHARTFYAVYRGKTRQLRKFKIGSATYLTLAQARDICKSVLGRIALGQDPQEERLAE 92 Query: 65 RKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 + +L+ E Y + E+ F +I+++ I+ + I Sbjct: 93 KTNTISLRKFFEEIYF--PKIRRERPKTAQRTETNFLRILKEDLSKPLASISAERIIKIR 150 Query: 124 ESRKHTP---SSAIQFLTSMRVLFKWAVRQ---------EYVAINPCLSVERPKRKTEGI 171 E +S ++ +R +A Q E + + E Sbjct: 151 EQLLRRGLGLTSVKRYENEIRASLNYAASQGLIEPIKVCEQIKCETTQRIRYLTPDEEER 210 Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFL------LYSGLRCSDSCRAGVQHLQNNIFSI- 224 ++ + + + R A L +G+R R + + +I Sbjct: 211 LQKALKERDEELRKTHKNIRGRYADYLEPLITLSLKTGIRRGAMLRLEWRDIDFAAKTIL 270 Query: 225 ---KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN---ATQFSIWFKAKAT 278 + KTG + L + L + +K Sbjct: 271 VRGEICKTGKSRRIPLSPIAFETLKAWREQQPQENKYVFPSAYTNQPKKHCKCAWKNLLI 330 Query: 279 KAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 +A + N H +R A+ AG + + G T++ Y A Sbjct: 331 RANITNFHWHDLRHDFASKLVMAGVDLNTVRELLGHSTLEMTLRYAHLAPSKLSAA 386 >gi|50122323|ref|YP_051490.1| site-specific tyrosine recombinase XerC [Pectobacterium atrosepticum SCRI1043] gi|49612849|emb|CAG76299.1| probable integrase/recombinase [Pectobacterium atrosepticum SCRI1043] Length = 352 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 44/291 (15%), Positives = 90/291 (30%), Gaps = 34/291 (11%) Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVES 125 TL+ + Y + + + + + G +++ + + Sbjct: 19 QTLRQYTTAYLAHLTATNHSPRTVEGYGERLRPFVTWCEERGLMQAAQVSLAALEAYQRH 78 Query: 126 RKH----------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW- 174 + LTS+R+LF+W + + ++ NP + PK + Sbjct: 79 LHGYRKADGKPLAQGGQLNR-LTSIRMLFRWLLHRHHILYNPAEQLTLPKAEKRLPAQIL 137 Query: 175 ----TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230 T+ M + G + R E L +GLR S+ + + + ++ Sbjct: 138 SEEETEAVMDAQDTDTLTGLRNRAVLEMLWSTGLRRSELAGLMLDDVDVGRGVLVVRQGK 197 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK----------- 279 +P G L+ + + +IW K Sbjct: 198 GNKDRVVPVGLRALVWVQRYLDAVRPRLTTRHDSGYLFVTIWGKRLGRATLTILAGRAIR 257 Query: 280 --AGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 A + K+ H R AT + GA + A G + ++ + YT+ A Sbjct: 258 NDAHLKKAGACHVFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVA 308 >gi|260889945|ref|ZP_05901208.1| DNA integration/recombination/invertion protein [Leptotrichia hofstadii F0254] gi|260860551|gb|EEX75051.1| DNA integration/recombination/invertion protein [Leptotrichia hofstadii F0254] Length = 342 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 45/331 (13%), Positives = 111/331 (33%), Gaps = 13/331 (3%) Query: 18 HGKII--YYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 GK Y R G + + A+ E K TLK + Sbjct: 14 SGKRRRPYIVRITAGFDMEGRQIMKTLGYYETQTKAIKALADYNENPYDISLKDITLKEV 73 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSA 133 + + ++ + +S+ S++ +++ + + + I T +++ + S H + + Sbjct: 74 MDRFMRNKKGL-VEKSSQKSYKVWYNYLKP-LCNKRMKDIRTLELQNFISSLNHLSTGTL 131 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193 + +R+LFK A+ + + + ++ P+ K + R E+ + Sbjct: 132 KNIKSFIRMLFKDAMEMDIIVKDYSEFIKLPRHKPKIERKVFTEEEIALLWENINELEYA 191 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253 L+Y+G+R ++ + ++ I + K+L + E Sbjct: 192 DVILILIYTGMRINELLKLQKINVDLEQNIITGGSKTEAGKNRIIPIHPKILPLVIKRME 251 Query: 254 TFFINNDKQKMNATQFSIW------FKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307 + + + F + G+ + H R AT+ +D + Sbjct: 252 NKTEYLIPNRRKSNYYEYNNFRIKEFMNIMKQLGMEHTIHDTRHTFATMISDVSDNETAI 311 Query: 308 MATYGWKTVDQAETYTKG-ADRIRLGIKNSR 337 G ++ + YT +++R ++ Sbjct: 312 TGIIGHTNINMTKRYTHTNIEKMRKELEKIN 342 >gi|241992584|gb|ACS73643.1| IntI1 [uncultured bacterium] Length = 315 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 34/300 (11%), Positives = 83/300 (27%), Gaps = 52/300 (17%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132 ++ + R+ + ++ + ++ + IR G + + + + + + S Sbjct: 16 VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 ++ L + + + + RP+ +++ + + Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLAPDEVVRILG--FLEGEH 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230 RL + L +G+R S+ + V+ L + +I ++ Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193 Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265 + + A + + M Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253 Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 F FK +AG+ K + H +R AT +G + G V YT Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313 >gi|254384553|ref|ZP_04999893.1| integrase [Streptomyces sp. Mg1] gi|194343438|gb|EDX24404.1| integrase [Streptomyces sp. Mg1] Length = 384 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 53/363 (14%), Positives = 99/363 (27%), Gaps = 37/363 (10%) Query: 18 HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77 G+ + G R P + LT + +R + P + + Sbjct: 21 SGRWQARYWAPDGSRRTAPETFATKTDAQDWLTLTKADIQRNHWTDPDVGKVNFEEYALK 80 Query: 78 YRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAI 134 + LA + + ++ GD D +IT + +R+ R ++ Sbjct: 81 WVDE---RGLAATTDELYRRLLRLHVLPAFGDLDLDEITPQAVRTWRAERLTATGATTVA 137 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194 + ++ + + A E + NPC + + T + G + RL Sbjct: 138 KCYRLLKAIMETATDDELIRRNPCRIRGAGSEQAKERPTATVAQVDALAEAM--GPRWRL 195 Query: 195 AFEFLLYSGLRCSDSCRAGVQHL-------------QNNIFSIKTQKTGTIITVELPDGF 241 F Y +R + + + + Sbjct: 196 MVYFCAYGPMRPEEQAALRRTSVTLDPLAVRITEAAPELNTGRRVEGDTKSAAGVRTIHL 255 Query: 242 MKLLAMTPIGKETFFINNDKQ----------KMNATQFSIWFKAKATKAGVNK--SAHGV 289 L M +F + T F + K G+ K + + Sbjct: 256 PAFLYMEVKRHLDWFAEKEPDGLLFVGEKGAPFRRTSFGRKWAKARAKVGLPKDFRFYDL 315 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL----GIKNSRRISSVVDS 345 R T+S +GAT + M G + A Y D + GI R + S Sbjct: 316 RHTGHTLSTQSGATLKDTMVRAGQSSEKAAMIYQHSDDERQQEVAGGIDARVRAARQKAS 375 Query: 346 DDP 348 P Sbjct: 376 PKP 378 >gi|296875995|ref|ZP_06900053.1| phage integrase family prophage Sa05 [Streptococcus parasanguinis ATCC 15912] gi|296432986|gb|EFH18775.1| phage integrase family prophage Sa05 [Streptococcus parasanguinis ATCC 15912] Length = 388 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 50/387 (12%), Positives = 116/387 (29%), Gaps = 66/387 (17%) Query: 11 VTKERTRHGKIIYY------FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS- 63 +T+ + + G +Y + G+ ++ T A + ++ Sbjct: 3 ITEHKKKDGTTVYRANIYLGIDRVTGKDVKTSIT-ARTRKEVKQKAKEAEIDFIQNGSTR 61 Query: 64 -PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRS 121 T K L + +S ++ N++ + I+ G + K+TT I++ Sbjct: 62 FKEATIKTYKELAELWWESYK-HTVKPNTQGNMSKILNKHILPLFGAYKLDKLTTPLIQN 120 Query: 122 GVESRKHTPSSAI----------QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 + + + T + + ++ V + + NP V P+ + Sbjct: 121 IINKLA--GKTNNGEQGAYLHYEKIHTVNKRILQYGVVMKAIPFNPAREVILPRNTQKEK 178 Query: 172 RPWTKEDMQQFKSFWSE------GSQPRLAFEFLLY-----SGLRCSDSCRAGVQHL--- 217 R K + + + R +E LY +G R +++ + Sbjct: 179 RQKIKHFDNIELKTFLDYLDNLDSDRYRYFYEKTLYNFLLATGCRINEALALEWSDIDLD 238 Query: 218 ----------QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI---------- 257 + + +++ + +L + Sbjct: 239 NAIVHVTKTLNRMQEVNSPKSKSSYRDIDIDPKTVTILKQYKRRQTQEAWKIGQTEKVVF 298 Query: 258 -NNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKT 315 + + N + K +A V HG R A++ +AG EL G T Sbjct: 299 SDFIHEYPNNSTLFTRLKTHFKRAKVPNIGFHGFRHTHASLLLNAGIPYKELQHRLGHST 358 Query: 316 VDQAE-TYTKGADRIRLGIKNSRRISS 341 + TY+ L +++++ S Sbjct: 359 LSMTMDTYSH------LSKESAKKAVS 379 >gi|228950288|ref|ZP_04112465.1| hypothetical protein bthur0007_63540 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228809450|gb|EEM55894.1| hypothetical protein bthur0007_63540 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 278 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 28/275 (10%), Positives = 79/275 (28%), Gaps = 12/275 (4%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESR---KH 128 ++ + + + + + G + D + + ++ ++ K Sbjct: 3 ILDSFINHEKEHGKSPETIRGYHYKLLHFEKWLGAVETDLYEFSRSDVQQYLDDLTSQKK 62 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + S+ ++R ++A + + + + R+ + + S Sbjct: 63 SASTVNGHYAAIRSFSQFAKKTDCIKDIRIVKAPNLYREAPVALERKEVLRILREVDRSG 122 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS----IKTQKTGTIITVELPDGFMKL 244 + + +Y+G+R ++ + + + ++ K + L Sbjct: 123 NKRDKAILLTCVYAGIRVAEIVSLDIDDISFSERQGTIRVRQGKGNKERIIPLHKEARYA 182 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATA 304 ++ +E+ + K GVN H R T DAG Sbjct: 183 ISDYLKTRESTAAALFLSNRQTRISKRTVQHICNKYGVN--PHQFRHTFVTDLVDAGIDD 240 Query: 305 HELMATYGWKTVDQAETYTKGA-DRIRLGIKNSRR 338 + G ++ Y + + I+ R Sbjct: 241 KTIQTLTGHESPAMITRYRSVRPEDKQNAIEALYR 275 >gi|154505395|ref|ZP_02042133.1| hypothetical protein RUMGNA_02917 [Ruminococcus gnavus ATCC 29149] gi|153794321|gb|EDN76741.1| hypothetical protein RUMGNA_02917 [Ruminococcus gnavus ATCC 29149] Length = 408 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 41/413 (9%), Positives = 92/413 (22%), Gaps = 77/413 (18%) Query: 1 MTPSLRLPPFVTKER----TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTP 56 M S + + G+ Y + R + T + Sbjct: 1 MAKSRKDSRGYVLRTGESQRKDGRYSYSYTDLDKNR---RTVYAKTLVELRAKERKIIRD 57 Query: 57 KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKIT 115 K + +N TL L + + L ++++++ ++ G KI Sbjct: 58 KEDGLNPQLADRMTLNELYDRFIE--QKYDLKPSTKVNYLYMYNHFVRPTFGKRLIGKIK 115 Query: 116 TKHIRSGVESR----KHTPSSAIQFLTSMRVLFKWAVRQEYVAIN-----PCLSVERPKR 166 ++ + ++ T + F+ AVR + N + Sbjct: 116 YSDVKKFYYRIILDEEMKANTLDSIHTQLHPAFQMAVRDGLLRQNPTDGLMAEIKKSHIW 175 Query: 167 KTEGIRPWTKED---MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223 + T + E LL +G+R + L Sbjct: 176 EDNPRHALTIPQQKAFMDYLKAHREYQGWVPIITVLLGTGMRIGECIGLRWDDLDFEKRI 235 Query: 224 IKTQKTGTIITVELPDGFMKL----------------------LAMTPIGKETFFINNDK 261 + T E + L I K F + + Sbjct: 236 VSVNHTFIYRPDENRKSVKHISTPKTISGRRTIPMIDEVFNAFLDEYEIQKCIGFSSEEI 295 Query: 262 QKMN-------------ATQFSIWFKAKATKAG-----------------VNKSAHGVRK 291 + + + + SAH +R Sbjct: 296 DGYSNFVFVTATGTVYLPNAVNRAIERARVAYNKDEIEIAEKEDREPLIIPHFSAHHLRH 355 Query: 292 FSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVV 343 T + + + + G + Y + + + + + Sbjct: 356 TFCTRLCENESNLKVIQSIMGHSDITTTMDVYAEATQEKK--QEIVANLQGKI 406 >gi|16128520|ref|NP_415069.1| DLP12 prophage; predicted integrase [Escherichia coli str. K-12 substr. MG1655] gi|89107403|ref|AP_001183.1| predicted integrase [Escherichia coli str. K-12 substr. W3110] gi|170080119|ref|YP_001729439.1| DLP12 prophage; integrase [Escherichia coli str. K-12 substr. DH10B] gi|238899817|ref|YP_002925613.1| DLP12 prophage; putative integrase [Escherichia coli BW2952] gi|124695|sp|P24218|INTD_ECOLI RecName: Full=Prophage DLP12 integrase; AltName: Full=Prophage QSR' integrase gi|41811|emb|CAA35974.1| int [Escherichia coli] gi|146497|gb|AAA65483.1| integrase [Escherichia coli] gi|455171|gb|AAA24030.1| DLP12 integrase [Escherichia coli] gi|1778451|gb|AAB40734.1| DLP12 integrase [Escherichia coli] gi|1786748|gb|AAC73638.1| DLP12 prophage; predicted integrase [Escherichia coli str. K-12 substr. MG1655] gi|85674673|dbj|BAE76313.1| predicted integrase [Escherichia coli str. K12 substr. W3110] gi|169887954|gb|ACB01661.1| DLP12 prophage; predicted integrase [Escherichia coli str. K-12 substr. DH10B] gi|238860795|gb|ACR62793.1| DLP12 prophage; predicted integrase [Escherichia coli BW2952] Length = 387 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 51/378 (13%), Positives = 112/378 (29%), Gaps = 56/378 (14%) Query: 17 RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76 R+ + G+RI+ A T + Sbjct: 6 RNEIWYASYSLPGGKRIKESL-GTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEACL 64 Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS----- 131 + + S S +S + + + I+ I S V + + Sbjct: 65 RWLEEKADKK----SLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWK 120 Query: 132 ------------------------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167 + + L ++ + + A +++ + ++ P + Sbjct: 121 QKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILR-AAERDWKWLEKAPVIKIPAVR 179 Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFS 223 + +R KE+ ++ E + +F L +GLR S+ Q + + Sbjct: 180 NKRVRWLEKEEAKRLIDECPE--PLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVN 237 Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI------------ 271 + K+ I V L D K+L + + K A S Sbjct: 238 PEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKT 297 Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 + + +AG+ + H +R A+ +G L GW++++ Y A Sbjct: 298 SWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNH- 356 Query: 331 LGIKNSRRISSVVDSDDP 348 +++R+I + + P Sbjct: 357 -LTEHARKIDDIFGDNVP 373 >gi|319775691|ref|YP_004138179.1| Prophage integrase [Haemophilus influenzae F3047] gi|319896769|ref|YP_004134963.1| prophage integrase [Haemophilus influenzae F3031] gi|317432272|emb|CBY80624.1| Prophage integrase [Haemophilus influenzae F3031] gi|317450282|emb|CBY86498.1| Prophage integrase [Haemophilus influenzae F3047] Length = 341 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 41/324 (12%), Positives = 103/324 (31%), Gaps = 22/324 (6%) Query: 14 ERTRHGKIIYYFRKGHGRRIR-LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 + ++G F G R+R + L + E +N +K T++ Sbjct: 4 RKNKNGVWQIDFTTPSGERVRCSSKTTDKKLAQHLHDKLKHEAWQVEQLN--KKPEKTVE 61 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS------GVESR 126 + K A ++ + + G+ +T++ I++ + Sbjct: 62 QALILLLKDAEHKKDK----LTKIQHAKYWRDEIGNKLLSSLTSEDIQNAIPTHVVRTGK 117 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 +P++ ++ +S+ A + ++ + P ++ + + W E + Sbjct: 118 ILSPATQNRYRSSIMRAINLAKQAGWIDVVPYIAK---NSEPKKRIRWITEKEAERLLDS 174 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----TIITVELPDGFM 242 + + +F L +G R ++ + ++ L D + Sbjct: 175 LNLNWMKDVCQFALLTGARMTEILSMTWDKINFANKMAIVTGDIAKSGRGRSLPLSDDAI 234 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIW-FKAKATKAGVN-KSAHGVRKFSATISADA 300 L+ + + ++ + S FK +A + H +R A+ Sbjct: 235 NLIKERMKYQVSPYVFHSGTGKLRDDISRRDFKRALQRANIKNFRFHDLRHTWASWHIQR 294 Query: 301 GATAHELMATYGWKTVDQAETYTK 324 G L GW+T++ + Y Sbjct: 295 GTPLMVLKELGGWETIEMVQKYAH 318 >gi|212696810|ref|ZP_03304938.1| hypothetical protein ANHYDRO_01373 [Anaerococcus hydrogenalis DSM 7454] gi|212676100|gb|EEB35707.1| hypothetical protein ANHYDRO_01373 [Anaerococcus hydrogenalis DSM 7454] Length = 370 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 55/352 (15%), Positives = 114/352 (32%), Gaps = 39/352 (11%) Query: 11 VTKERTRHGKIIYYFRKGHGRRIRLP---YPHESTFIPAYMSALTGSTPKREYINSPRKK 67 +T + + G+ +Y F G+ + FI + + + K++ + S Sbjct: 3 ITSYKDKDGQTLYKFNIYLGKDPLTGKEIRTNRQGFISKKQAQIEYAKLKKQGVKSI--C 60 Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127 TL L+ ++ + + + I+ G+ KITT I+ + + Sbjct: 61 NITLNELLKDWLPLYEPTVKYTTYTRVYGVFKNHILPYLGNKKLDKITTPVIQKLINKKS 120 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + + LFK+A+ Q Y NPCL++ P + E + ++ + Sbjct: 121 QEIADFKLINIYLNRLFKFAINQGYTDYNPCLNIIYPTIRKEQKDMSLEYWDKEELKEFL 180 Query: 188 EGSQPRLAFEFLL------YSGLRCSDSCRAGVQHLQNNIFSIK---------------- 225 ++ L + L Y+GLR + + ++ Sbjct: 181 YHAKKDLDQMWYLFFKIATYAGLRKGEILALTWNDIDFKNKTLTVNKSLSVTRQSKKAIT 240 Query: 226 -TQKTGTIITVELPDGFMKLLAMT---------PIGKETFFINNDKQKMNATQFSIWFKA 275 + +I T+ + +K L + F + +N F+ Sbjct: 241 SPKTKSSIRTISIDKTTIKELYNWKIEQSKLKLQNINQYIFTTKQSELINLNSPRKRFER 300 Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKG 325 K + K H +R A++ +AG T ++ G T Y Sbjct: 301 VIKKHDLRKIRLHSLRHTHASLCFEAGMTIKDVQHRLGHSTSKTTMNIYIHV 352 >gi|160889618|ref|ZP_02070621.1| hypothetical protein BACUNI_02044 [Bacteroides uniformis ATCC 8492] gi|156860610|gb|EDO54041.1| hypothetical protein BACUNI_02044 [Bacteroides uniformis ATCC 8492] Length = 379 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 41/241 (17%), Positives = 82/241 (34%), Gaps = 13/241 (5%) Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER---PKRK 167 + + + ++ +L ++R AV ++Y+ +NP ++ PKR Sbjct: 141 IDYLKKTKQEHCKKEKTLHVNTQFYYLKTLRYCLNRAVSEDYITVNPMNKIKNEDKPKRN 200 Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--- 224 T +++ + + R AF F + GLR D + ++ + Sbjct: 201 RTERDYLTIKELTRLVHTPFYNTLLRKAFLFSCFCGLRHCDIIALRWEDIRYDENGNALL 260 Query: 225 --KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 +KT I++ L +K L ET + + + +AG+ Sbjct: 261 SIIQKKTKEAISLPLCSEAIKHLPDRGNAPETEKVFAGLVSLGRSNV--ILHKWVEQAGI 318 Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSRRI 339 + + H R AT+ G + + G + + Y K D + I I Sbjct: 319 SKHVTFHTARHTHATMMLTLGVDLYTVSKLLGHTNIQTTQIYAKLVDESKKKAIDLIPNI 378 Query: 340 S 340 S Sbjct: 379 S 379 >gi|304413964|ref|ZP_07395381.1| phage integrase [Candidatus Regiella insecticola LSR1] gi|304283684|gb|EFL92079.1| phage integrase [Candidatus Regiella insecticola LSR1] Length = 380 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 55/380 (14%), Positives = 119/380 (31%), Gaps = 59/380 (15%) Query: 17 RHGK-IIYYFRKGHGRRIRLP-YPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 R GK + G+RI+ + + + +++ TL+ Sbjct: 5 RRGKIWYASYSLPEGKRIKESLGTEDKRQAQELHDKRKAELWRIDKLDN--LPEVTLEEA 62 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---- 130 + + S +S + +++T I + + + Sbjct: 63 CLRWLEEKADKK----SLDDDKSRMGFWLLHFEGVKLKELTEARIYAAISKMTNRRYAEN 118 Query: 131 -------------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165 S+ + L M+ L + +++ + ++ P+ Sbjct: 119 WRLQSEAMVRKGQKAPEYQEKAVTLSTKAKHLALMKSLLR-TAERDWKWLEKAPVIKVPQ 177 Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----I 221 K + IR + Q+ E + +F L +GLR S+ + + Sbjct: 178 VKNKRIRWLKPAEAQRLIDECPE--PLKSVVKFALATGLRRSNIINLEWKQIDMPRRVAW 235 Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------------F 269 + + K+G I V L + K+L T+ + K Sbjct: 236 INPEDSKSGQAIGVALNETSCKILRDQIGKHHTWVFVYTEAKTRTDGTLTPSVRKMRVDA 295 Query: 270 SIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 + +K +AG+ H +R A+ AG L GW+++D Y + R Sbjct: 296 NSAWKQALKRAGIEAFRFHDLRHTWASWLIQAGVPLSVLQEMGGWESIDMVRRYAHLSPR 355 Query: 329 IRLGIKNSRRISSVVDSDDP 348 ++++ I ++ D+D P Sbjct: 356 H--LTEHAKHIDAIFDNDVP 373 >gi|254563094|ref|YP_003070189.1| integrase [Methylobacterium extorquens DM4] gi|254270372|emb|CAX26368.1| putative integrase [Methylobacterium extorquens DM4] Length = 337 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 38/335 (11%), Positives = 92/335 (27%), Gaps = 17/335 (5%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 R R R+ I + ++ + + + T+ L Sbjct: 6 RKRGSSWQAQVRRQGSSPISKSFTTKADALLWARETERSIDRAELPVTIKDLQRITVADL 65 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVESRKH--TPS 131 ++ Y I K+T + + R + Sbjct: 66 LARYEAEVTTKKRGA---DRERYKLRVIRSHPLTSLSLAKLTAVAVSRYRDDRLKVVQGA 122 Query: 132 SAIQFLTSMRVLFKWAVRQE--YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + + L ++ F+ A ++ + NP + P+ + E Q+ + Sbjct: 123 TVRRELAILQHCFEVARKEWGTPLPTNPVHGITLPEPSRAREQRLEAEAGQKLHAAIGSV 182 Query: 190 SQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247 L L +G+R + +H+ + T + + Sbjct: 183 HAWYLRPLMELAIETGMRRGELLSLQWRHVSLGKRTAHLPITKNGHARTVALTPKAI--- 239 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHE 306 I K + ++ + ++ +AG+ H +R + + +AG + E Sbjct: 240 -EILKALPQTDARVLPVSGNAVRLAWERLRKRAGLPGLRFHDLRHEAVSRFFEAGLSIPE 298 Query: 307 LMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 + G + YT R + +++ Sbjct: 299 VALMSGHRDTRMLMRYTHL--RPEALAEQLAKVAQ 331 >gi|317131475|ref|YP_004090789.1| integrase family protein [Ethanoligenens harbinense YUAN-3] gi|315469454|gb|ADU26058.1| integrase family protein [Ethanoligenens harbinense YUAN-3] Length = 330 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 32/262 (12%), Positives = 76/262 (29%), Gaps = 14/262 (5%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES----RKHT 129 L+ + + + S +++ +I R+I T +R + + R + Sbjct: 55 LLEIFISAKRVEGCSEKSLKYYDATIRHMIVDIA-KPVREIDTGDLRIYLANYQKLRNSS 113 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + F W ++Y+ +P + + K + ++ E +++ + E Sbjct: 114 KVTIDNMRRIFSSFFGWLEDEDYILKSPVRRIHKIKTEKTIKDTFSDEGLEKLRDACDE- 172 Query: 190 SQPRLAFEFLLYSGLRCSDSCR-AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248 + + L +G+R + + + + K G V L Sbjct: 173 LRDLAMVDLLASTGMRVGELVQLNREDMNFHERECLVLGKGGKERMVYFDARTKIHLRNY 232 Query: 249 PIGKETFFINNDKQKMNAT------QFSIWFKAKATKAGV-NKSAHGVRKFSATISADAG 301 + + + A + H R+ AT + D G Sbjct: 233 LDSRSDDNPALFVSLTSPHERLLIGGVETRIREIGKNAALQKVHPHKFRRTLATRAIDKG 292 Query: 302 ATAHELMATYGWKTVDQAETYT 323 ++ G +D Y Sbjct: 293 MPIEQVQRLLGHVKIDTTMHYA 314 >gi|261317605|ref|ZP_05956802.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|265988639|ref|ZP_06101196.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1] gi|261296828|gb|EEY00325.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|264660836|gb|EEZ31097.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1] Length = 304 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 50/276 (18%), Positives = 97/276 (35%), Gaps = 14/276 (5%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVES 125 + +I+ Y+ S + LA +++ ++ + D+I +K GD + IR Sbjct: 20 FRAVITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSIAQFDLPQKIRPVIRKWRGE 79 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 P +A + + + +AV ++ NPC +++ + WT +D+ + K+ Sbjct: 80 FADKPRTADYGMQVLSRVLSYAVDPLGKISQNPCEGIKQLYKNDRAAIIWTDQDIARLKT 139 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFM 242 + A + ++GLR D R H+ +N + + + L Sbjct: 140 KC--SPEVAWAVDLAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRHTKEAVIPLYAELR 197 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISAD 299 LL P N K F F +A + + H R +AT Sbjct: 198 ALLQTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLHFHDFRGTAATKFYI 257 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 AG + + GW+ + R I+ Sbjct: 258 AGLSERVIAEIMGWEEETVRNIIRRYVSR-TAAIEA 292 >gi|258653657|ref|YP_003202813.1| integrase [Nakamurella multipartita DSM 44233] gi|258556882|gb|ACV79824.1| integrase family protein [Nakamurella multipartita DSM 44233] Length = 368 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 49/357 (13%), Positives = 97/357 (27%), Gaps = 35/357 (9%) Query: 20 KIIYYFRKGHGRRIRLPYPH-ESTFIPAY----MSALTGSTPKREYINSPRKKPTTLKWL 74 + + + P A+ + T + + T Sbjct: 17 RYRARYTGPDTQLHNAPSTFETREDAEAWLTDERRLIAAGTWAPPAHRTKTIEHRTFGDY 76 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHT-PSS 132 +++ + +R + D+ I+ + IT +R+ + P+ Sbjct: 77 ATDWLT---ARPIKPRTRSHYAMLLDKLILPGFESSPLKTITPDQVRAWHTRLGDSTPTL 133 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 + +R + AV + NP K ++ Sbjct: 134 RAHAYSLLRAILTDAVHDGIIPANPAHIRGAGNAKRVHKIKPASLAELGVLVGAMPDAKY 193 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------------------- 232 +L + GLR + + I ++ Sbjct: 194 QLMTLLAAWCGLRFGELTELRRSDIDAKNGVIHVRRGVVRTDGEVIVGTPKSAAGHRDVN 253 Query: 233 ITVELPDGFMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAG-VNKSAHGV 289 I L L G++ F + + + F KAG + H + Sbjct: 254 IPPHLLPAVRDYLKANVNGRDGLLFPAADGVSHLAPSSLYRVFYPARKKAGRPDLRWHDL 313 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346 R A ++A GA+ ELM G T A Y A + +RR+S +V+ + Sbjct: 314 RHTGAVLAAATGASLAELMGRLGHSTPGAALRYQHAAQGR--DAEIARRLSQLVEVN 368 >gi|28871740|ref|NP_794359.1| site-specific recombinase, phage integrase family [Pseudomonas syringae pv. tomato str. DC3000] gi|66044722|ref|YP_234563.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas syringae pv. syringae B728a] gi|302185971|ref|ZP_07262644.1| Phage integrase:Phage integrase, N-terminal SAM-like protein [Pseudomonas syringae pv. syringae 642] gi|28854992|gb|AAO58054.1| site-specific recombinase, phage integrase family [Pseudomonas syringae pv. tomato str. DC3000] gi|63255429|gb|AAY36525.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas syringae pv. syringae B728a] Length = 320 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 40/271 (14%), Positives = 79/271 (29%), Gaps = 31/271 (11%) Query: 89 VNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRKHTP---SSAIQFLTSMRV 142 +R ++++ + G + +T H+ + +H ++ + L ++ Sbjct: 39 PRTRRAYQNDLEDFCSFIGLASADEFRVVTRSHVLAWRAHLEHRGLAGATIRRKLAALAS 98 Query: 143 LFKWAVRQEYV---AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLA 195 LF + + + R + + E G + R Sbjct: 99 LFDHLLENNAIAGGNPVHGVKRPRIESNEGKTPALGDHQAKALLEAPDETTLKGQRDRAL 158 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---------------IITVELPDG 240 LLY GLR ++ V +Q + G I L + Sbjct: 159 LAVLLYHGLRREEAALLQVSDIQERRGIQHLKVHGKGGKVRYLPLHPIAAGRIHQYLENS 218 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATIS 297 L + A A A KAG+ HG+R +AT + Sbjct: 219 EHHLAERKVPLFMPLRGKLTGAGITANGIYAVVTAYAKKAGIEVDGLGVHGLRATAATNA 278 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADR 328 + A ++ A G + + Y + +R Sbjct: 279 LEHEADIAKVQAWLGHANISTTKIYDRRENR 309 >gi|251797061|ref|YP_003011792.1| integrase family protein [Paenibacillus sp. JDR-2] gi|247544687|gb|ACT01706.1| integrase family protein [Paenibacillus sp. JDR-2] Length = 305 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 80/289 (27%), Gaps = 23/289 (7%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG--VESRKHT 129 L +R ++ + + + H+ S + R Sbjct: 12 GKLTQAFRIWMKQAGYTDTTQKEYMREAYAYLESLEGAAAEQAGKMHVISFLISKQRGAG 71 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLS-VERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + + L+++R + + E NP + + K + ++++ S Sbjct: 72 DRARNRTLSAIRSFYTALIDFEMATRNPAMEVKKSKTEKNKKPVYLEEDELASSLSCIEG 131 Query: 189 GSQPRLAFEFLL--YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL- 245 + R FLL Y GLR + R +I+ G + + Sbjct: 132 RYRARNVAIFLLMSYCGLRVGEVHRLNRSDFNPVRGTIEVFGKGRKWNEIPVPEELAAVL 191 Query: 246 -AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG---------------VNKSAHGV 289 + + D ++ + + AG S H + Sbjct: 192 SEVAQDRITPYKEQEDAFFVSQKGRRLSIRQIQKIAGQTFEAFKSINPHAANKKLSCHKL 251 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKNSR 337 R ATI G + G +++ YT D+ + + R Sbjct: 252 RHTFATILLKNGVDIRVVKELLGHASIETTMIYTHVNDDQKKEAMATIR 300 >gi|29348544|ref|NP_812047.1| integrase [Bacteroides thetaiotaomicron VPI-5482] gi|29340449|gb|AAO78241.1| integrase [Bacteroides thetaiotaomicron VPI-5482] Length = 410 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 36/317 (11%), Positives = 93/317 (29%), Gaps = 24/317 (7%) Query: 53 GSTPKREYINSPRKKPTTLKWLISEY---RKSAHWGSLAVNSRISFESYFDQIIRKSG-- 107 + +E + K TTL + E+ + ++ +S ++ + G Sbjct: 92 EAKDVKEALQGSVKTQTTLLSFVDEHISELSTHEGIDMSKSSVWTYRKIRKNLAEFIGEK 151 Query: 108 ----DFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159 D + ++T I + + + + +++ + + + A + Sbjct: 152 YRLTDLAFGQLTEPFISDFHHYLLDEKGFSSGTITIYVSLFKKMCRIAFERGLCKNLLFA 211 Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219 K + + D + + +PRL+ L+ + + + Sbjct: 212 HYRVGTPKVMTPKALSMSDFIKIRDVELPEDKPRLSVSRDLFLFACYAGTAFIDTVSITK 271 Query: 220 NIFSIKTQKTGT---IITVELPDGFMKLLAMT---PIGKETFFINNDKQKMNATQFSIWF 273 + +KLL E + ++ + I Sbjct: 272 ANVKVLEDGDKWLVYNRKKTGTLARVKLLPEALELMAKYEDEARDTLFPLLSTNRVRIDL 331 Query: 274 KAKATKAGVNKSA--HGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 A +K+ H R A++ +AG + G K V + Y + + + Sbjct: 332 ITICKLAETSKTYSYHSGRHSFASLITLEAGVPMETICKMLGHKDVKMTQRYARVT-QKK 390 Query: 331 LGIKNSRRISSVVDSDD 347 L ++ + + + D Sbjct: 391 L-FEDMDKFIAATEKDF 406 >gi|160938619|ref|ZP_02085971.1| hypothetical protein CLOBOL_03514 [Clostridium bolteae ATCC BAA-613] gi|158438318|gb|EDP16077.1| hypothetical protein CLOBOL_03514 [Clostridium bolteae ATCC BAA-613] Length = 298 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 39/277 (14%), Positives = 92/277 (33%), Gaps = 19/277 (6%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTP 130 ++ +S ++ + + Y Q G+ T + + + + TP Sbjct: 15 EAFGQWLESCE---RSMETVKKYRHYLKQFKEFIGEEPV---TKEMVLLWKANLREHITP 68 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 + + ++ FK+ + +S + TK++ ++ + Sbjct: 69 VTINCVIAALNGFFKYCGWDGCESKFLKISKSSFY---PERKELTKDEYKRLVKTAFDNG 125 Query: 191 QPRLA--FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII--TVELPDGFMKLLA 246 RLA E + SG+R S+ V + I+ + + T +L Sbjct: 126 NERLALVLETICASGIRVSELSFITVAAIHKGQAEIECKGRIRTVLLTRQLCSLLHSYAQ 185 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGAT 303 I F+ + + ++ + KA +A V H +R A + Sbjct: 186 KNNISSGMIFVTKNGKPLDRSNIWREMKALGIEANVKAEKIFPHNLRHLFARTYYEIEKN 245 Query: 304 AHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSRRI 339 +L G + ++ YTK + + R+ ++ + + Sbjct: 246 LSKLADILGHRDINTTRIYTKESGSQHRIQLEKMKLL 282 >gi|91224611|ref|ZP_01259872.1| Site-specific recombinase XerD-like protein [Vibrio alginolyticus 12G01] gi|91190499|gb|EAS76767.1| Site-specific recombinase XerD-like protein [Vibrio alginolyticus 12G01] Length = 396 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 40/346 (11%), Positives = 100/346 (28%), Gaps = 38/346 (10%) Query: 15 RTRHGKIIYYFRK---GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP----RKK 67 ++G+ + R G + L E + A+ A E ++ + Sbjct: 41 VGKNGRKKWLVRYTLNGRKGSLSLGTFPEVSLADAWKQAQRTKLMVAEGVDPKNSTVKPD 100 Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI--IRKSGDFDYRKITTKHIRSGVES 125 T+ + H+ ++ + + S+ + + D Y ++ HI+S V Sbjct: 101 IPTVSEYFN-----NHFIKISKSRKKSWRHDIARFNHCVEIWDISYDQLRVSHIQSMVAG 155 Query: 126 R---------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 K + S+ + L ++++ + + + N V+ R + Sbjct: 156 LIDKVHLRGKKLSRSTINRVLCLLKLMGRMIEEEYSI-PNVAARVKLFPETGARERWLSP 214 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 +++++ + + F++ + N + + Sbjct: 215 QEIKRIFEELRKPDYCPIRSRFIILLFMLGCRERSLRAARWPNIDLENGVMRIPREDSKN 274 Query: 237 LPDGFMKL----------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--- 283 ++L L + K+K + +Q F + + Sbjct: 275 GFQHQIQLTPQAIQEFRFLLRLKKKGNPYVFPGQKEKSHISQPRHLFNKIKKELMLKEPE 334 Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 H R A+ AG L G K++ Y + + Sbjct: 335 QIVFHTARHSYASSLISAGVDVGVLKQLLGHKSISSTMRYARAGNE 380 >gi|255010479|ref|ZP_05282605.1| phage integrase [Bacteroides fragilis 3_1_12] Length = 338 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 40/291 (13%), Positives = 81/291 (27%), Gaps = 37/291 (12%) Query: 72 KWLISEYRKSA--HWGSLAVNSRISFESYFDQIIRKSGD--------FDYRKITTKHIRS 121 + I + + +L+ N+ S+ ++ IT + Sbjct: 11 GYWIRRFLCEYLTNIRNLSANTLKSYRDAIRLLMPFVAKCVKKEVDKILLADITDARVVD 70 Query: 122 GVES----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 ++S R + + L ++ K+ I ++ K T Sbjct: 71 FLDSLERNRSCSIKTRNLRLAAVCSFAKYISVNCPEHIEWSRNIRIIPVKKTERTLITYL 130 Query: 178 DMQQF-------KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-----IK 225 + ++ S+G + FL +G R ++ ++ L Sbjct: 131 EKEEMNALLDAPDKNTSQGWRDYALLLFLYNTGARADEAATLLIRDLSLPKRKGLAVVSI 190 Query: 226 TQKTGTIITVELPDGFMKLL---AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG- 281 T K L L E F+N Q + A K Sbjct: 191 TGKGNKTRRCPLWQHTRDALSSIIKNRTKDEYVFLNRFGQPITRFGIYEMVTRYAEKIKE 250 Query: 282 ----VNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 + K S H +R +AT +G + + A G +++ Y + Sbjct: 251 LIPTIKKKRVSPHTIRHTTATHLLQSGVDINTIRAWLGHVSINTTNIYAEV 301 >gi|320156126|ref|YP_004188505.1| integron integrase IntI4 [Vibrio vulnificus MO6-24/O] gi|326424001|ref|NP_761248.2| Integron integrase IntI4 [Vibrio vulnificus CMCP6] gi|319931438|gb|ADV86302.1| integron integrase IntI4 [Vibrio vulnificus MO6-24/O] gi|319999378|gb|AAO10775.2| Integron integrase IntI4 [Vibrio vulnificus CMCP6] Length = 320 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 39/300 (13%), Positives = 82/300 (27%), Gaps = 53/300 (17%) Query: 80 KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT- 138 A + ++ S+ Q I + KH+ + A + Sbjct: 11 DHMRTRHYATKTIQAYISWIKQYIYFHRMAHPSTLNEKHVEEFLTHLAVEQKVAAKTQAL 70 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198 ++ + +N + ++ + TK +++ F + +L Sbjct: 71 ALNSVLFLYREYFRTPLNNEIKFQKSLLDRKLPVVLTKPELRAFIQH--IDPRYKLHIML 128 Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQK------------------------------ 228 L SGLR + R +Q + + +++ + Sbjct: 129 LYGSGLRVMECVRLRIQDVDYHYGALRVWQGKGGKNRTVTLAKELYPLLKEQEALALRYY 188 Query: 229 ------------------TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS 270 E+ + L + ++ + +N Sbjct: 189 QKDRITAGYAGVWLSSSLQRKYQGAEMDFNWHYLFPSDRLSRDPESDLLRRHHINEQALQ 248 Query: 271 IWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 K A AG+ KS H +R AT ++GA + G V + YT +R Sbjct: 249 RAVKRAAKDAGITKSISCHTLRHSFATHLLESGADIRTVQEQLGHSDVKTTQIYTHVLER 308 >gi|317505107|ref|ZP_07963052.1| integrase [Prevotella salivae DSM 15606] gi|315663771|gb|EFV03493.1| integrase [Prevotella salivae DSM 15606] Length = 391 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 41/309 (13%), Positives = 91/309 (29%), Gaps = 26/309 (8%) Query: 43 FIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG---SLAVNSRISFE--- 96 F S + R+ T+ L ++Y + ++ + ++ Sbjct: 60 FQRLEFSEELSLERIKSEYLGKREAMETVLSLFTKYNNDMYAQIGCGVS---KANYRKFD 116 Query: 97 ---SYFDQIIR-KSGDFDYRKI--TTKHIRSGVESRK----HTPSSAIQFLTSMRVLFKW 146 +F + K D I T I + + ++AI+ L + + + + Sbjct: 117 ICKRHFTNFLEIKYARTDLNAIELTPIVIHDFDVYLRTIVGQSFNTAIKTLKTFKTVIIF 176 Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSG 203 + +P L++ K K T E++ + R F F ++G Sbjct: 177 GRKAGVFNHDPFLNI-HFKTKRVDRGFLTDEEIDTIMHKEFATQRLVNVRDIFLFSCFTG 235 Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK 263 L D ++ + + M N Sbjct: 236 LAYVDVANLTADNIITMDGKQWIVTARKKTDTLSHILLLDIPKMIIKKYAGCAKNGRLIP 295 Query: 264 M-NATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320 + + + + + K A G+NK + H R AT+ G + G ++ + Sbjct: 296 ILSNQRMNSYLKEIADVCGINKNLTFHMARHTFATMMLTKGVPVESVSKMLGHSSITTTQ 355 Query: 321 TYTKGADRI 329 Y + ++ Sbjct: 356 LYARITNKK 364 >gi|301311630|ref|ZP_07217556.1| putative truncated integrase [Bacteroides sp. 20_3] gi|300830371|gb|EFK61015.1| putative truncated integrase [Bacteroides sp. 20_3] Length = 312 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 43/320 (13%), Positives = 84/320 (26%), Gaps = 32/320 (10%) Query: 46 AYMSALTGSTPKREY-INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFES---YFDQ 101 + + + + Y S ++ + Sbjct: 2 RIRAEREQEFKESMLGYRLKKDRAVNFLDYFQAYINSY--------TKKDIRMVQIALSR 53 Query: 102 IIRKSGD--------FDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQE 151 + IT + + V + A + + ++A+ + Sbjct: 54 FKDFLKEQYPMNEFSIKPELITKEMMEQFVAYLQSRSVGEGAKSIYQRFKKVIRYAIDHD 113 Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS---EGSQPRLAFEFLLYSGLRCSD 208 + +PC SV + + Q E R AF F LY GLR D Sbjct: 114 VMLKDPCKSVTCKVDSQMLRKDVLSPEEIQKLIACHYDNENPTIRRAFIFCLYCGLRFCD 173 Query: 209 SCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL---LAMTPIGKETFFINNDKQKMN 265 +++ +K +++ T + L L Sbjct: 174 VKDLTYKNVDYANRLLKFEQSKTKGHSASSGVVIPLNDGLLSIIGEAPADKNCLIFDLPT 233 Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 K +AG++K S H R A + GA + + G + E YT Sbjct: 234 YESCCKSVKRWVKRAGIDKHISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYT 293 Query: 324 KGADRIRLGIKNSRRISSVV 343 + D +L + + + Sbjct: 294 RAVD--KLKEEAINSLPELK 311 >gi|154492484|ref|ZP_02032110.1| hypothetical protein PARMER_02118 [Parabacteroides merdae ATCC 43184] gi|254881869|ref|ZP_05254579.1| phage integrase [Bacteroides sp. 4_3_47FAA] gi|154087709|gb|EDN86754.1| hypothetical protein PARMER_02118 [Parabacteroides merdae ATCC 43184] gi|254834662|gb|EET14971.1| phage integrase [Bacteroides sp. 4_3_47FAA] Length = 330 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 36/264 (13%), Positives = 82/264 (31%), Gaps = 14/264 (5%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRK 127 L+ + + + + S Q+ +K TT+ IR+ K Sbjct: 53 DRLLDIFLSAKQVEGCTTPTIKYYGSTIRQLFKKMPKK-VTDYTTEDIRAYLAVFQRKNK 111 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + + F W ++Y+ +P + + K T+ + E+++Q + + Sbjct: 112 SSRVTIDNIRRIFSSFFAWLEEEDYIIKSPVRRIHKVKTGTQVKEVLSDENIEQLRDSCT 171 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLA 246 E + + L +G+R + + + + N I K V L Sbjct: 172 E-IRDLAIIDILASTGMRVGELVKLNREDINFNERECIVFGKGNKERIVYFNARAKIHLQ 230 Query: 247 MTPIGKETFFIN------NDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISAD 299 ++ +++ + + A + H R+ AT++ D Sbjct: 231 QYLASRKDRNKALFVSLAKPHKRLGISGVETRLRKLGRSAKIVRVHPHKFRRTLATMAID 290 Query: 300 AGATAHELMATYGWKTVDQAETYT 323 G ++ G +D Y Sbjct: 291 KGMPVEQVQRLLGHVKIDTTMHYA 314 >gi|160874309|ref|YP_001553625.1| integrase family protein [Shewanella baltica OS195] gi|217972349|ref|YP_002357100.1| integrase family protein [Shewanella baltica OS223] gi|160859831|gb|ABX48365.1| integrase family protein [Shewanella baltica OS195] gi|217497484|gb|ACK45677.1| integrase family protein [Shewanella baltica OS223] gi|315266542|gb|ADT93395.1| integrase family protein [Shewanella baltica OS678] Length = 287 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 38/267 (14%), Positives = 83/267 (31%), Gaps = 21/267 (7%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRK 127 L+ ++ + +R ++ Q+ + + IT + + + R Sbjct: 2 SSLLQQFHDEIRLRGYSARTRSAYLRAITQL-QHYANQPLDSITDEQLTAYFRYLNLERH 60 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 H+ ++ L + ++ + +++ PKR + + + +D+ Sbjct: 61 HSRATLKLQLNGIHFFYEHVLGRDFTVQLSL-----PKRPHKLPQLLSCQDIAALLCHCQ 115 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLL 245 + R GLR S+ V + +K + V + + LL Sbjct: 116 -NLKQRAMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGKGAYDRLVIISPTLLTLL 174 Query: 246 AMTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297 ++ ++ + F A A + S H +R AT Sbjct: 175 RQYWRAYHPVEWLFASTYHDVVYPLHESTFRKALAKAARLASITKPCSPHSLRHAYATHQ 234 Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324 AG H+L A G ++ E Y Sbjct: 235 LQAGMPLHQLQAQLGHHSIKSTERYLH 261 >gi|38234408|ref|NP_940175.1| putative phage integrase [Corynebacterium diphtheriae NCTC 13129] gi|38200671|emb|CAE50367.1| Putative phage integrase [Corynebacterium diphtheriae] Length = 271 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 46/253 (18%), Positives = 85/253 (33%), Gaps = 6/253 (2%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134 I++Y++ G A + S+ + + D +TT I + + + P++ Sbjct: 10 IADYQEHLLAGGRARGTIHVRISHISRCLTFI-DKPLWAVTTGDIERWLAAGEWGPAARK 68 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194 TS+RV F WAVR+ + NP +++ + R D + + RL Sbjct: 69 SARTSVRVFFAWAVREGLIETNPAITIIPVPQVRSVPR--PCPDALISDAMKVAAPRVRL 126 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254 A E + GLR + R ++ + G L L + Sbjct: 127 AIEIMATCGLRRDECARVRAGDVEPVGQGWILRVRGKGGHERLIPCPPHLARRIAAAQGW 186 Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWK 314 F ++A A + H +R AT++ + G Sbjct: 187 VFPGGANGHVSAGWLGKLISRALPGA---WTPHKIRHRYATVAYGDTYDLRAVQELLGHA 243 Query: 315 TVDQAETYTKGAD 327 +V + YT +D Sbjct: 244 SVATTQIYTAVSD 256 >gi|319901057|ref|YP_004160785.1| integrase family protein [Bacteroides helcogenes P 36-108] gi|319416088|gb|ADV43199.1| integrase family protein [Bacteroides helcogenes P 36-108] Length = 392 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 42/276 (15%), Positives = 83/276 (30%), Gaps = 19/276 (6%) Query: 87 LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKW 146 L +++ + S + D + ++T + I S + M+ L K+ Sbjct: 120 LKKSTKKNHLSTLALLQEFKKDVTFSELTFEFISSFEHFLQLKGYHTNTVAKHMKHLKKY 179 Query: 147 AV----RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL-----AFE 197 ++ + + E++ + + G + AF Sbjct: 180 INVAINKEYMSMQQYAFRKYKIRMVENKHTHLIPEELDKLEKLDLTGKNTKYQKTLDAFL 239 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI 257 F Y+G+R SD ++ I E+ L I + Sbjct: 240 FCCYAGMRYSDFISLMPNNIVEINKEIWLVYKSVKTNTEVRLPLYLLFGGKGIDILRKYW 299 Query: 258 NNDKQKMNATQFSIWFKAK---ATKAGV--NKSAHGVRKFSATISADAGATAHELMATYG 312 +N + + S K A AG+ S H R +AT+ G + G Sbjct: 300 DNIQAFFHIKDNSNANKDLIILARLAGISKKISFHTARHTNATLLIYNGVNITTVQKLLG 359 Query: 313 WKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 K+V + YT D + + + ++ P Sbjct: 360 HKSVKTTQIYTNVMD-----MTIVCDLEKNLGNNFP 390 >gi|307566138|ref|ZP_07628595.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] gi|307345150|gb|EFN90530.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] Length = 324 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 42/304 (13%), Positives = 89/304 (29%), Gaps = 31/304 (10%) Query: 68 PTTLKWLISEYRKSAHW---GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI----- 119 PTTL L + +S S A + + + D + + I + I Sbjct: 6 PTTLLELSNAELQSVKESVGKSKAEGTYTNLCYANRMLCEFIKDLESKDIEIRSITEELF 65 Query: 120 ---RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI--RPW 174 R ++ + S+ +L + L AV + + NP + + K + + + Sbjct: 66 EEYRFFLKKKGLKGSTINNYLCWLSRLMFRAVSKRIIRCNPLDNAKYEKDEKKIRFLQKS 125 Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234 + + E R F F ++GL SD +H+Q + T Sbjct: 126 DVMKLMSMRMNDKETELARQMFIFSCFTGLAISDMENLKYKHIQTAADGQMYIRKERQKT 185 Query: 235 VELP--------------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280 +K + + + + + + Sbjct: 186 KMEFIVPLHPIAKTIIEQQRQLKAVKEEGNNTDMDNRLIFQPCCSRSVLAAKLSIVGRAC 245 Query: 281 GVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338 G+ + H R T+ AG + G ++ + Y + D ++ R Sbjct: 246 GIKQRLSYHMGRHTFGTMCLSAGIPIESIAKMMGHASIASTQIYAQVTDCK--ISEDMDR 303 Query: 339 ISSV 342 + + Sbjct: 304 LIAK 307 >gi|283785697|ref|YP_003365562.1| putative phage integrase [Citrobacter rodentium ICC168] gi|282949151|emb|CBG88759.1| putative phage integrase [Citrobacter rodentium ICC168] Length = 326 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 40/286 (13%), Positives = 89/286 (31%), Gaps = 22/286 (7%) Query: 47 YMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRIS---FESYFDQII 103 + + + K+E++ + TL L+ + L + + ++ I Sbjct: 38 FERYVMANVEKKEWLGASTD-RRTLGELLEIWWL------LHGQTLENGAIERQQLEKTI 90 Query: 104 RKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 R G+ ++ + I R + S+ + + + +F + + Sbjct: 91 RALGNPAVNRLDKREIARHRGERLTDGISASTINRDVYRLSGMFTALSKLGEFRVENPCH 150 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220 +P R+ + + + + EG R+A L +G R ++ + + + Sbjct: 151 GLQPLREAQPPMTYLTKQEIARLLEFLEGDNRRVALLC-LSTGARWNEGSTLRAEQVNHG 209 Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280 + K G TV + + + + G N QF + Sbjct: 210 RVTFLKTKNGKKRTVPISEALEREIKTCETGPLFDV--------NYAQFREQLRRVKPDL 261 Query: 281 GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 +S H +R A+ G L G ++ Q Y A Sbjct: 262 PRGQSTHVLRHTFASWFMMNGGNIIALQQIMGHASIKQTMVYAHLA 307 >gi|257438273|ref|ZP_05614028.1| integrase/recombinase, phage integrase family [Faecalibacterium prausnitzii A2-165] gi|257199350|gb|EEU97634.1| integrase/recombinase, phage integrase family [Faecalibacterium prausnitzii A2-165] Length = 327 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 31/261 (11%), Positives = 77/261 (29%), Gaps = 14/261 (5%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHTP 130 + + + + + + + ++ G ++ITT +R R+ + Sbjct: 53 AAAFITAKRIEGCSEKTLTYYSKTIEAMLNGVGKSP-QQITTDDLRRYLTDYQTQRRSSK 111 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 + + F W ++++ +P + + K +T E ++ + S Sbjct: 112 VTIDNIRRILSSFFSWLEDEDFIVKSPVRRIHKVKTAKIIRETYTDEALELMRDNCST-V 170 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTP 249 + + L SG+R + + + N V L Sbjct: 171 RDLAIIDLLASSGMRVGELVTLNREDINFNERECVVFGKGNKERLVYFDARTKIHLQNYL 230 Query: 250 IGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGA 302 + +++ + + +NK H R+ AT + D G Sbjct: 231 DERSDSNPALFVTLKEPHERLMIGGVETMLRELGRRLKLNKVHPHKFRRTLATSAIDKGM 290 Query: 303 TAHELMATYGWKTVDQAETYT 323 ++ G + +D Y Sbjct: 291 PIEQVQQLLGHQKIDTTMHYA 311 >gi|330830137|ref|YP_004393089.1| phage integrase [Aeromonas veronii B565] gi|328805273|gb|AEB50472.1| Phage integrase [Aeromonas veronii B565] Length = 321 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 42/314 (13%), Positives = 81/314 (25%), Gaps = 32/314 (10%) Query: 32 RIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNS 91 R + E+ ++ P E P L L+ + ++ Sbjct: 2 RKQFATKGEALAFERFVLDPDKGKPWLEGQGEPIDGRR-LSDLVELWF---GRHGQSLRD 57 Query: 92 RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----------------KHTPSSAIQ 135 + +S + GD T + + E+R TP++ + Sbjct: 58 GEARKSKLLTVCHYLGDPLAVNFTARDFAAYREARLSGDITDRRAINQEKQGVTPNTVNR 117 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---SFWSEGSQP 192 +R +F R L R + E + D + S Sbjct: 118 EHAYLRAVFNELKRLGEWQSENPLDGLRAYKVAEAELAFLYPDELKRLLAACAESPNPDL 177 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252 L + L +G R S+ + N + K+ +V + L Sbjct: 178 LLVVKLCLATGARWSEVEELTQSQVSPNRITFTRTKSKKSRSVPISPELYAQLPRKRGRL 237 Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYG 312 + F + + + ++ H +R A+ G L G Sbjct: 238 FSDC---------YRAFEMVVERAGLELPAGQNTHVLRHTFASHFMMNGGNILVLQKILG 288 Query: 313 WKTVDQAETYTKGA 326 T+ Y A Sbjct: 289 HSTIAMTMRYAHFA 302 >gi|187935337|ref|YP_001886583.1| DNA integration/recombination protein [Clostridium botulinum B str. Eklund 17B] gi|187723490|gb|ACD24711.1| DNA integration/recombination protein [Clostridium botulinum B str. Eklund 17B] Length = 337 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 39/308 (12%), Positives = 93/308 (30%), Gaps = 50/308 (16%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-FDYRKITTK------------ 117 +I ++ ++ +L++ + S+ + + D + + Sbjct: 11 FDEIIQDFLDYCNYKNLSLKTIKSYHQTLTLFFKYLEEEKDIKNVNKIGKQIVEEYIKFT 70 Query: 118 --------------HIRSGVESR-----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158 +++ ++ R K + S+ +L +++V F + + + N Sbjct: 71 QERGKYSFVASIDGMVKANIDKRTDIGEKVSTSTLNNYLRNIKVFFSYLEENQIIRENTV 130 Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGV 214 + K + + T + + + + + +G+R +++ + Sbjct: 131 KKCKYIKNERKSKEQLTDNEFNKLIKSMDLTKFHEYRDYVITNLIFDTGMRLNETLNLTI 190 Query: 215 QHLQNNIFSIKTQKT----GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM------ 264 + +I V KLL K+T Sbjct: 191 NDVDFTRRTIMIDSQISKGRKDRVVFYSQTMSKLLQRWLRFKDTMQETELLFPTQRTNGV 250 Query: 265 -NATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321 + + F F+ +A +NK + HG+R A A + H L G +V E Sbjct: 251 LSVSNFERNFRIYLKRAKINKSITPHGLRNNFARRFLLASSDIHTLSKILGHSSVTVTEK 310 Query: 322 -YTKGADR 328 Y D Sbjct: 311 AYLDLMDE 318 >gi|16519719|ref|NP_443839.1| putative integrase/recombinase of undefined transposable element [Sinorhizobium fredii NGR234] gi|2497416|sp|P55429|Y4EF_RHISN RecName: Full=Putative integrase/recombinase y4eF gi|2182375|gb|AAB91651.1| putative integrase/recombinase of undefined transposable element [Sinorhizobium fredii NGR234] Length = 251 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 27/231 (11%), Positives = 66/231 (28%), Gaps = 13/231 (5%) Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 I T + +K P S L+++R F + +++ ++P + Sbjct: 5 EDIRTYQVY-LANEKKLAPGSIHIALSALRFFFNVTLERDWAPEEVLPLPKKP---QKLP 60 Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKT 229 + +++Q F + +GLR S++ + + + ++ K Sbjct: 61 IILSPDEVQHFLG-CVADVKHHAILTTCYAAGLRISEAVQLKPTDIDSQRMVVRVEHGKG 119 Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT------KAGVN 283 V L +++L + + Sbjct: 120 QKDRYVMLSPKLLEILRDYWRMWRPEAWLFPGDRAGHPITRYAVGQACVKPHDLSRLSKP 179 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334 + H +R +AGA + G +++ Y + A + Sbjct: 180 VTPHSLRHAFVVHLLEAGADVRTIQPLLGHRSLATTAHYLRIATNKVCATE 230 >gi|148244009|ref|YP_001220247.1| phage integrase family protein [Acidiphilium cryptum JF-5] gi|146400572|gb|ABQ29105.1| phage integrase family protein [Acidiphilium cryptum JF-5] Length = 330 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 39/313 (12%), Positives = 86/313 (27%), Gaps = 40/313 (12%) Query: 71 LKWLISEYRKSA--HWGSLAVNSRISFESYFDQIIRKSGDFDY------------RKITT 116 L LI + + N+ + F ++R + + Sbjct: 6 LPALIQRFFTDRLCVQMEASRNTVAGYRDTFRLLLRYASARHVKPPVKLTIEDIDADLIA 65 Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + +R ++ S L ++R F++ + + C + K R T Sbjct: 66 DFLVHTETARGNSARSRNTRLAAIRSFFRYVAMSDPTWLLQCQRILAMPNKRYVKRTVTF 125 Query: 177 EDMQQ-------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229 D + G + + +GLR S+ + + Sbjct: 126 LDSDEIAALLAAPDRTTWAGRRDHALLLLAVQTGLRASELVGLQCGDVVLESGAHIRCMG 185 Query: 230 --GTIITVELPDGFMKLLAMTPIGKETF----FINNDKQKMNATQFSIWFKAKATKAGVN 283 L +KLLA + F + ++++ + A + Sbjct: 186 KGRKERATPLRRETVKLLAAWIGDDKNKSKPLFPSIRGERLSRDALEHLVRKHCLTASLT 245 Query: 284 K--------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 + H +R +A G + G + V+ + Y R++ Sbjct: 246 CPSIGSKRVTPHTLRHSTAMDLLHHGVDPAVIALWLGHENVETTQIYIHADMRLKE---- 301 Query: 336 SRRISSVVDSDDP 348 + ++ V D P Sbjct: 302 -KALARVAAPDTP 313 >gi|188026430|ref|ZP_02997899.1| hypothetical protein PROSTU_04138 [Providencia stuartii ATCC 25827] gi|291326773|ref|ZP_06125806.2| glutamine amidotransferase, class I [Providencia rettgeri DSM 1131] gi|188019829|gb|EDU57869.1| hypothetical protein PROSTU_04138 [Providencia stuartii ATCC 25827] gi|291312882|gb|EFE53335.1| glutamine amidotransferase, class I [Providencia rettgeri DSM 1131] Length = 337 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 37/316 (11%), Positives = 91/316 (28%), Gaps = 38/316 (12%) Query: 62 NSPRKKPTTLKWLISEYRKS--AHWGSLAVNSRISFESYFDQIIRKSGD--------FDY 111 K ++ ++ ++ +L+ + + + + Sbjct: 3 RKSMSKQSSFPEIVQQFFTEYLVAQRALSPQTIACYRDALKLFLEFATSQLHRQPVAMKL 62 Query: 112 RKITTKHIRSGVE----SRKHTPSSAIQFLTSMRVLFKWAVRQEY---VAINPCLSVERP 164 IT I ++ R++T S LT++R ++A R++ + L+V Sbjct: 63 EDITPDLILKFLDNLELERQNTVRSRNLRLTALRTFLRFAGRRDITALHTVERALNVPMK 122 Query: 165 KRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221 + I T+ ++ + L F + +G R S+ V + + Sbjct: 123 RFDQPLIGHLTRPEIIAILGAPGDDWTSQRDHLLFTIIYNTGARVSEVINIRVVDVVLDG 182 Query: 222 FSIKTQKTGTIITVELPDG------FMKLLAMTPIGKETFF--INNDKQKMNATQFSIWF 273 + +P L Q M + Sbjct: 183 SACVHLNGKGRRKRSIPLWKSTVGIIRAWLRTNQNMHGDAALLPARSGQPMTRANVAQRL 242 Query: 274 KAKATKAG--------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 +A S H +R +A +G + + + G ++V+ Y + Sbjct: 243 ALAVNRAAATQPSLKTKRVSPHVLRHTTAMHLLQSGVSFNLIALWLGHESVNTTHRYVEA 302 Query: 326 ADRIRLGIKNSRRISS 341 +++ + R+ + Sbjct: 303 --NLQMKEEVLSRLDA 316 >gi|146313149|ref|YP_001178223.1| phage integrase family protein [Enterobacter sp. 638] gi|145320025|gb|ABP62172.1| phage integrase family protein [Enterobacter sp. 638] Length = 336 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 53/334 (15%), Positives = 93/334 (27%), Gaps = 42/334 (12%) Query: 14 ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + G I Y +G+RIR F + + ++ TL Sbjct: 4 RKNPAGGWICELYPNGANGKRIR------KKFATKGEALAFEQYTVQNPWQEEKEDRRTL 57 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----- 126 K L+ + SAH +L + + G+ R + E R Sbjct: 58 KELVDSWY-SAHGITLKDGLKRQLAMH--HAFECMGEPLARDFDAQMFSRYREKRLKGEY 114 Query: 127 -------KHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKED 178 + +P + L R +F R E+ NP ++ + + + T + Sbjct: 115 ARSNRVKEVSPRTLNLELAYFRAVFNELNRLGEWKGENPLKNMRPFRTEEMEMAWLTHDQ 174 Query: 179 MQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 + Q P L L +G R S++ L + K TV Sbjct: 175 ISQLLGECKRHDHPDLETVVRICLATGARWSEAESLRKSQLAKYKITYTNTKGRKNRTVP 234 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA----HGVRKF 292 + + L G+ F++ + G+ A H +R Sbjct: 235 ISKELYESLPDDKKGRLFSDCYG------------AFRSALERTGIELPAGQLTHVLRHT 282 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA 326 A+ G L G + Y A Sbjct: 283 FASHFMMNGGNILVLQRVLGHTDIKMTMRYAHFA 316 >gi|310813961|gb|ADP30788.1| IntI1 [Serratia rubidaea] Length = 313 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 35/300 (11%), Positives = 84/300 (28%), Gaps = 52/300 (17%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132 ++ + R+ + ++ + ++ + IR G + + + + + + S Sbjct: 16 VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 ++ L + + + + RP+ T +++ + + Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230 RL + L +G+R S+ + V+ L + +I ++ Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193 Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265 + + A + + M Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253 Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 F FK +AG+ K + H +R AT +G + G V YT Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATAFLRSGYDIRTVQDLLGHSDVSTTMIYT 313 >gi|315650280|ref|ZP_07903352.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986] gi|315487391|gb|EFU77701.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986] Length = 341 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 43/334 (12%), Positives = 99/334 (29%), Gaps = 28/334 (8%) Query: 1 MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60 M + +LP + + IY + G+R + + Y++ T + Sbjct: 1 MATAKKLPSGSYRCQ------IYDYTDDKGKRHYKSFTAATKKEAEYLA-----TSFKLE 49 Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 + K T+ +Y L+ + ++ + I K IT + I+ Sbjct: 50 ETATVKGNLTVSKATEQYIN-NRLSILSPTTVRTYTGIANNQISKIAKLKIDSITQEQIQ 108 Query: 121 SGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + S +P + + + + + + V+ +D Sbjct: 109 VFINSIAGTLSPKTIRNVHGLLNAVIRTYRPNFALKTDLPKKVQ-------PDIHIPSDD 161 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 + +++G++ + + +R + C + NI +K + Sbjct: 162 EVKQLLAYTKGTELEIPILLAAFGPMRRGEICALEASDINGNIVHVKNAMVKAPDRSWVI 221 Query: 239 DGFM-----KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKF 292 + + + ++ + F KAG+ H +R + Sbjct: 222 KAPKTYSSDRYIEFPDFVIDLLPKEGKITNLHPNMITDRFANLLKKAGLKHFRFHDLRHY 281 Query: 293 SATISADAGATAHELMATYGWKTVDQAE-TYTKG 325 SA+I G +M GW T + Y Sbjct: 282 SASILHAMGIPDKYIMERGGWSTSSTLKTVYQHT 315 >gi|301309511|ref|ZP_07215453.1| tyrosine type site-specific recombinase [Bacteroides sp. 20_3] gi|300832600|gb|EFK63228.1| tyrosine type site-specific recombinase [Bacteroides sp. 20_3] Length = 418 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 41/272 (15%), Positives = 83/272 (30%), Gaps = 19/272 (6%) Query: 77 EYRKSAHWGSLAVNS---RISFESY--FDQIIRKSGDFDYRKITTKHIRSGVESRKHTP- 130 EY A +S I+++ +I K + +I K I S + P Sbjct: 133 EYFDHVQRLRHAHSSDSIIINWKRVHELLKIFAKGDTILFSQIDLKLIESFRMFLLNAPQ 192 Query: 131 ----------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 ++A + + + K A Y+ ++ V+ + + T +++ Sbjct: 193 GGGKKGVISQNTASTYFSIFKAALKQAFIDGYLTVDIGAKVKGIQGQESRREYLTIDELN 252 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 + + R A F +GLR D + ++ S + T Sbjct: 253 RLAQTPCDPLLKRAA-LFSALTGLRHCDIQKLKWSEIEVFNGSYRLNFTQQKTKGVEYMP 311 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISA 298 + ++ + + + K +AG+ K H R AT+ Sbjct: 312 ISEQAFQLCGERKDGEQLVFAGLPDPSWINRPIKKWVVEAGITKHITYHCFRHSYATLQL 371 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIR 330 G + + G V + Y K D + Sbjct: 372 AGGTDIYTVSKMLGHTNVRTTQVYAKVVDAKK 403 >gi|288574964|ref|ZP_06393321.1| integrase family protein [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570705|gb|EFC92262.1| integrase family protein [Dethiosulfovibrio peptidovorans DSM 11002] Length = 297 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 39/287 (13%), Positives = 90/287 (31%), Gaps = 26/287 (9%) Query: 69 TTLKWLISEYRKSAHWG-SLAVNSRISFESYF---DQIIRKSGDFDYRKIT--TKHIRSG 122 T+ ++ ++ + N+ ++ + +SG + Sbjct: 2 TSFSSILGQFLSYLSLELGESQNTCKAYRVDISQWNDFCSRSGRDPVASDSDLYGKYVHY 61 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + S P++ + ++R + V + YV+ + + P R + T+ ++ + Sbjct: 62 MRSIDLAPATIQRKCAAVRTWINFLVVEGYVSDDVPMPP-LPDRPKRLPQLLTEGEVSRL 120 Query: 183 KSFW------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITV 235 + R E L GLR S+ C ++ LQ S+ V Sbjct: 121 LGACDGDPMGYLDFRDRAILETLYGCGLRASELCSLKLRDLQFERASMIIFGKGNKERMV 180 Query: 236 ELPDGFMKLLAMTPIG---------KETFFINNDKQKMNATQFSIWFKAKATKAGV---N 283 L + + + F++ + + M + + ++AG+ Sbjct: 181 PLVGSARRWIERFIDEARPSVAKEGVDQVFLSRNGRPMRRESLWKMIRKRGSRAGISQSR 240 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 H +R A+ G L G +++ E Y +R Sbjct: 241 LHPHVIRHTVASHLLRRGMDLRTLQEFLGHESIGTTEKYLHFDQELR 287 >gi|307565482|ref|ZP_07627968.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] gi|307345813|gb|EFN91164.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] Length = 410 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 36/311 (11%), Positives = 98/311 (31%), Gaps = 23/311 (7%) Query: 54 STPKREYINSPRKKPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKS---- 106 R + ++ TT + ++ + +++ +S + Sbjct: 92 LDKIRSFFVGKDREYTTFLPIFDKFNEDVRQRVGHTISKDSLQKYSVLRRHFAEFLIYKY 151 Query: 107 GDFD--YRKITTKHIRSGVESR----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 G D + T ++ +++++ L +++ + +A ++ Y+ +P L+ Sbjct: 152 GKKDIGLAEFTPSIVQDFELYLSTAAGCAYNTSVKKLKALKTVTIYAQKRGYLLHDPFLN 211 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHL 217 + T E++ + + + R F F ++GL D ++ Sbjct: 212 HRF-HLEPVNRGFLTDEEIMKIANKEIAIQRLELVRDVFIFSCFTGLAYIDVSNLTPDNI 270 Query: 218 QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--NATQFSIWFKA 275 + +VE + + + K + + + K Sbjct: 271 VTLDDKLWIMTKRQKTSVETNVLLLDIPKSIIAKYSHKTYRDGKLFPILTNQKTNAYLKE 330 Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 A G+ K + H R AT+S G + G + + Y + ++ Sbjct: 331 IADICGIKKNQTFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKK--IE 388 Query: 334 KNSRRISSVVD 344 + +++ +D Sbjct: 389 DDMEQLAGKLD 399 >gi|227327444|ref|ZP_03831468.1| phage integrase family protein [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 337 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 53/332 (15%), Positives = 92/332 (27%), Gaps = 39/332 (11%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 + + G I + R+ + P +E R TLK Sbjct: 4 RKHQDGGWICEIYPNGSKGKRIRKKFATKGEAIAFEQYAAQNPWQEEKGDRR----TLKE 59 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR------- 126 L+ + SAH +L + +S G+ R + E R Sbjct: 60 LVDAWY-SAHGITLKDGLKR--QSAMHHAYECMGEPLARDFEAQMFSRYREKRLKGGYAR 116 Query: 127 -----KHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + TP + L R +F R E+ NP ++ + + + T++ + Sbjct: 117 SNRVKEVTPRTLNLELAYFRAMFNELTRLGEWKGENPLKNMRPFRTEEAEMAYLTQDQIA 176 Query: 181 QFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 F S P L + L +G R S++ L + K V + Sbjct: 177 LFLSECQRHEHPHLQAVVKICLSTGARWSEAENLRRSQLSPYKITFTYTKGRRNRAVPIS 236 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA----HGVRKFSA 294 + L T F++ + G+ A H +R A Sbjct: 237 KALYESLPENKGRLFTDCYG-------------AFRSALERTGIELPAGQLTHVLRHTFA 283 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGA 326 + G L G + Y A Sbjct: 284 SHFMMKGGNILVLQRVLGHTDIKMTMRYAHFA 315 >gi|213422078|ref|ZP_03355144.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 166 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 28/153 (18%), Positives = 48/153 (31%), Gaps = 14/153 (9%) Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTP 249 + + E L +GLR S+ + + ++ V L + + L Sbjct: 2 RDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYL 61 Query: 250 IGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATI 296 + F + Q+M F K A AG++ S H +R AT Sbjct: 62 EHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATH 121 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + GA + G + + YT A Sbjct: 122 LLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 154 >gi|42527350|ref|NP_972448.1| DNA integrase [Treponema denticola ATCC 35405] gi|41817935|gb|AAS12359.1| DNA integrase [Treponema denticola ATCC 35405] Length = 335 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 36/304 (11%), Positives = 82/304 (26%), Gaps = 57/304 (18%) Query: 84 WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT----PSSAIQFLTS 139 + + ++ + + IR++ + + + ++ I + V SS Q L + Sbjct: 30 AKHYSKRTMEAYSYWISRFIRENKNKNLKTLSDTEINAFVSRLAVKEKAAASSQNQALAA 89 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199 + L+K + + ++PK+ + + G RL Sbjct: 90 LLFLYKNILGLTIKTPENIVRAKKPKKLPAIMTREETAKIFSLLPENDYGLLIRLL---- 145 Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQ----------------------KTGTIITVE- 236 +G+R ++ R +Q + I + + Sbjct: 146 YGTGMRLMEALRLRIQDIDFGKNEITVHCGKGAKDRKTVLPVSLKFPLQKHMEKVRLIHE 205 Query: 237 ------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272 + + + + ++ + Sbjct: 206 ADCKEGFGSVPLPFALAKKYPNASKAWAWQWVFPQARRWRNKETGEQGRHHIDPSVIQRT 265 Query: 273 FKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 ++G+ K H R AT +AG + G V YT +R Sbjct: 266 LHEAVLRSGIPKPIGCHTFRHSFATHLLEAGYDIRTIQELLGHSDVKTTMVYTHVLNRGG 325 Query: 331 LGIK 334 LGI+ Sbjct: 326 LGIQ 329 >gi|329122255|ref|ZP_08250843.1| xylulose-5-phosphate/fructose-6-phosphate phosphoketolase [Haemophilus aegyptius ATCC 11116] gi|327473816|gb|EGF19233.1| xylulose-5-phosphate/fructose-6-phosphate phosphoketolase [Haemophilus aegyptius ATCC 11116] Length = 341 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 42/324 (12%), Positives = 107/324 (33%), Gaps = 22/324 (6%) Query: 14 ERTRHGKIIYYFRKGHGRRIR-LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 + ++G F G R+R + L + E +N +K T++ Sbjct: 4 RKNKNGVWQIDFTTPSGERVRCSSKTTDKKLAQHLHDKLKHEAWQVEQLN--KKPEKTVE 61 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS------GVESR 126 + K A ++ + + G+ +T++ I++ + Sbjct: 62 QALILLLKDAEHKKDK----LTKIQHAKYWRDEIGNKLLSSLTSEDIQNAIPTHVVRTGK 117 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 +P++ ++ +S+ A + ++ + P ++ + IR T+++ ++ Sbjct: 118 ILSPATQNRYRSSIMRAINLAKQAGWIDVVPYIAKSS--EPKKRIRWITEKEAERLLDSL 175 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----TIITVELPDGFM 242 + + +F L +G R ++ + ++ L D + Sbjct: 176 NLN-WMKDVCQFALLTGARMTEILSMTWDKINFANKMAIVTGDIAKSGRGRSLPLSDDAI 234 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIW-FKAKATKAGVN-KSAHGVRKFSATISADA 300 L+ + + ++ + S FK +A + H +R A+ Sbjct: 235 NLIKERMKYQVSPYVFHSGTGKLRDDISRRDFKRALQRANIKNFRFHDLRHTWASWHIQR 294 Query: 301 GATAHELMATYGWKTVDQAETYTK 324 G L GW+T++ + Y Sbjct: 295 GTPLMVLKELGGWETIEMVQKYAH 318 >gi|317481412|ref|ZP_07940479.1| phage integrase [Bacteroides sp. 4_1_36] gi|316902397|gb|EFV24284.1| phage integrase [Bacteroides sp. 4_1_36] Length = 343 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 44/308 (14%), Positives = 99/308 (32%), Gaps = 42/308 (13%) Query: 71 LKWLISEYRKS--AHWGSLAVNSRISFESYFDQIIRKSGDFD--------YRKITTKHI- 119 ++ + H +++ N+ S+ F Q I D + + +T ++ Sbjct: 7 FAKYLTRFLSEYLPHQRNVSKNTIASYRDSFVQFINYMKDINGIPVERLLLKHLTRDNVI 66 Query: 120 ---RSGVESRKHTPSSAIQFLTSMRVL---FKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 + ++K+T ++ L ++R ++ V V LS++ K + Sbjct: 67 NYLQWLHNTKKNTSATCNYRLAAIRSFCSYLQYIVIDNMVEWQSILSIKAKKTEISPPNY 126 Query: 174 WTKEDMQ----QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229 + E ++ Q + +G + + +G R + V ++ + + T Sbjct: 127 LSMEGIKLLLAQPDTTSWKGRRHLALLSLMYDTGARVQEIADLTVDCVRIDTTPYTIRLT 186 Query: 230 GTIITVE------------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277 G L + K+ F N +K+ + K A Sbjct: 187 GKGRKTRIVPLAEAQVDILRSYMEENNLNDPNMMKKPLFFNGRHEKLTREGITYILKIYA 246 Query: 278 TKAG------VNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR- 328 A + K S H +R A AG + G ++ + Y + + Sbjct: 247 DMANKQQPEIIPKKISCHSIRHSKAMHLLQAGVNLVYIRDILGHVSIQTTDIYARADSKA 306 Query: 329 IRLGIKNS 336 R ++N+ Sbjct: 307 KREALENA 314 >gi|164633081|gb|ABY64756.1| IntI1 [Klebsiella pneumoniae] Length = 317 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 34/301 (11%), Positives = 83/301 (27%), Gaps = 52/301 (17%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132 ++ + R+ + ++ + ++ + IR G + + + + + + S Sbjct: 16 VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 ++ L + + + + RP+ T +++ + + Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230 RL + L +G+R S+ + V+ L + +I ++ Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193 Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265 + + A + + M Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253 Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 F FK +AG+ K + H +R AT +G + G V Y Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYR 313 Query: 324 K 324 Sbjct: 314 H 314 >gi|149182724|ref|ZP_01861190.1| integrase-recombinase protein [Bacillus sp. SG-1] gi|148849584|gb|EDL63768.1| integrase-recombinase protein [Bacillus sp. SG-1] Length = 279 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 35/277 (12%), Positives = 85/277 (30%), Gaps = 21/277 (7%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGV---ESRK 127 +I ++ + N+ ++E + ++++ + ++ + E + Sbjct: 7 AIIEDFTVWLENEGKSANTVRTYERELTKYQDWLQQKGLSLKEVSQEDVQQYIRFLEGQG 66 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +P + + L ++R K+ R E + ++ I Sbjct: 67 RSPVTTDKILGAIRTFSKFIKRPEITTGIEMKTTDK----RTEIECLNGSQCATLLKKVK 122 Query: 188 EGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKL 244 E R LL++G+R S+ C + + TG T+ L Sbjct: 123 EEGNDRNTAIVYTLLHTGIRVSELCALNQSDIDLDKGRLEVRTSTGHPRTIPLSVEAKYY 182 Query: 245 LAMT---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAG 301 L K+ F++ +++ K + + H +R D G Sbjct: 183 LECHLATSPVKDAVFVSRANERLTERAIQYILKK------FDVNPHKLRHTFCQQLVDKG 236 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338 + + G K ++ + Y K + ++ Sbjct: 237 VSIEIVSRLAGHKDINVTKRYAKSRIEPFALEEAIQK 273 >gi|126666597|ref|ZP_01737575.1| Tyrosine recombinase XerC [Marinobacter sp. ELB17] gi|126628985|gb|EAZ99604.1| Tyrosine recombinase XerC [Marinobacter sp. ELB17] Length = 324 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 33/291 (11%), Positives = 84/291 (28%), Gaps = 34/291 (11%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---------------GDFDYRKITTKH 118 + + + L+ + ++ ++ R + +R + + Sbjct: 17 VDGFIRHLASEKRLSPLTCEHYQRDLLRLQRWLQEGYQEYSLNHSQEHSEISWRSLNSHD 76 Query: 119 IRSGVESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 IR V S + L+++R + + +R+ V +P ++ PK Sbjct: 77 IRRYVAHLSRASLNGRSIARHLSAIRRFYHYLLREGLVDNSPAEAIRAPKSGRRLPVVAD 136 Query: 176 KEDMQQFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 + + ++ + FE L +GLR ++ + ++ +K G Sbjct: 137 VDQLTHLLDAQADDPLELRDVCIFELLYSAGLRLAEVAALDLGTVELAAAQVKVTGKGNK 196 Query: 233 ITVELPDGFMKLLAMTPIG---------KETFFINNDKQKMNATQFSIWFKAK--ATKAG 281 V + ++ F++ +++ A Sbjct: 197 QRVLPVGRPALAALQAWLAVRPGLAGAGQQALFVSRRGDRLSHRSIQARLARWGLVKGAD 256 Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R A+ ++ + G + + YT D L Sbjct: 257 QKLHPHMLRHSFASHLLESSGDLRAVQELLGHADIATTQVYTH-LDFQHLA 306 >gi|51597440|ref|YP_071631.1| phage integrase/recombinase [Yersinia pseudotuberculosis IP 32953] gi|51590722|emb|CAH22367.1| Possible phage integrase/recombinase [Yersinia pseudotuberculosis IP 32953] Length = 327 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 50/300 (16%), Positives = 97/300 (32%), Gaps = 16/300 (5%) Query: 28 GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87 +G+RIR + A+ + + ++E+++ P +L L + + S H ++ Sbjct: 20 RNGKRIR-RTFSKKHEAVAFEKYVVVNYHEKEWLSKPTD-KRSLSELSTLWW-SYHGQNM 76 Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLF 144 ++ ++IR D +I I R SS + L + +F Sbjct: 77 DYG--QKYKVQLAKVIRIMSDLCAFQIDKNVIARYRAIRLAGGVKASSVNRDLAVLSGMF 134 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204 + L+ + + R + + + +G R+A L +G Sbjct: 135 TALINAGVYHSEHPLAGISKLKPKQTARAFLSQSEIKKLLNCLDGDNRRVAILC-LSTGA 193 Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264 R ++ + +H+ +N + K G TV + L G Sbjct: 194 RWGEAIKLRTEHIIDNRITFVATKNGKQRTVPISSDVFNDLTAMKSGLLFNDAAYLI--- 250 Query: 265 NATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 F K+ T ++ H +R AT G L G T+ Q Y Sbjct: 251 ----FRQKLKSVKTDLPQGQATHVLRHTFATHFMINGGNIITLQRILGHSTIQQTMLYAH 306 >gi|21910994|ref|NP_665262.1| putative integrase - phage associated [Streptococcus pyogenes MGAS315] gi|28876488|ref|NP_795660.1| putative integrase [Streptococcus pyogenes phage 315.6] gi|28895320|ref|NP_801670.1| integrase [Streptococcus pyogenes SSI-1] gi|50913366|ref|YP_059338.1| DNA integration/recombination/invertion protein [Streptococcus pyogenes MGAS10394] gi|21905202|gb|AAM80065.1| putative integrase - phage-associated [Streptococcus pyogenes phage 315.6] gi|28810566|dbj|BAC63503.1| putative integrase [Streptococcus pyogenes SSI-1] gi|50902440|gb|AAT86155.1| DNA integration/recombination/invertion protein [Streptococcus pyogenes MGAS10394] Length = 362 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 44/364 (12%), Positives = 97/364 (26%), Gaps = 34/364 (9%) Query: 11 VTKERTRHGKIIYYFRKG------HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64 + K + G Y R G+++R T A + + + Sbjct: 2 IEKYTKKDGTTAYRLRAYLGVDPMTGKQVRTTRQGFKTEREAKRTEVKLVDDFQRQGAWK 61 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGV 123 TT + + ++ ++ + ++Y+ I G KIT ++ + Sbjct: 62 NNDKTTFDDAARLWFEQYK-NTVKPSTFLVNQNYYKSTIKPHIGKSQISKITVMACQNLI 120 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----M 179 S+ +++ + +FK+AV + NP R + + Sbjct: 121 NHLAQ-YSACASYISVINRIFKFAVHLGIIENNPMDRTIRARCTYAHKEKMFYSKEELLI 179 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF----------------- 222 E + L + L Y GLR ++ Sbjct: 180 FLDIVKKEESLEMLLIYRLLAYGGLRIGEAVALYDTDFDFTNNTISITKTLAQTKAGKVI 239 Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 K + + + + + K + + Sbjct: 240 QNPKTKKSSRTISMDQETMRLAKEYMRQSVRPLHGSFRVFNLLTSTVRRRLKRTVERHHL 299 Query: 283 NK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRIS 340 K + HG R A++ +AG A G + YT + + +++ Sbjct: 300 KKINPHGFRHTHASLLFEAGVPAKLAQERLGHAKISITMDLYTHLS--KNQTDNVAEKLA 357 Query: 341 SVVD 344 + Sbjct: 358 DFIA 361 >gi|299529325|ref|ZP_07042764.1| integrase family protein [Comamonas testosteroni S44] gi|298722703|gb|EFI63621.1| integrase family protein [Comamonas testosteroni S44] Length = 337 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 39/328 (11%), Positives = 90/328 (27%), Gaps = 28/328 (8%) Query: 13 KERTRHGKIIYYF-RKGHGRRIR----LPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67 + +R+ + + F + G+R R LP + + L + K Sbjct: 4 RFDSRNQRWRFEFDQVIAGQRQRASRLLPKGYTKAEAQKFD--LEETKRLHSIATGVSKP 61 Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGV- 123 ++ + Y K S+E+ ++ + + I Sbjct: 62 EPLIEDAVLLYLKYHAPA------LKSYENIVRELKACYSAYAGKPFSALPAIAISYRPV 115 Query: 124 --ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + + + ++ L+ +R ++A + + + + Sbjct: 116 GDDKKLMSAATVRNRLSYLRAACRYAWKHHGLGDRNPAERISMPKVRNERHVYLGRAEFL 175 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 + + R A YSG+ + + Sbjct: 176 KICSKIKPGKERAAIRIAFYSGM--------RAAEVGLAKVAYGGDVFELSSQHTKNGQP 227 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADA 300 + + + K S FKA A AG + H +R +A+ +A Sbjct: 228 RAVPIHPRVAHIVRNPDLWPVKPTKWTVSKAFKAGARAAGFGHARLHDLRHSTASEMINA 287 Query: 301 GATAHELMATYGWKTVDQAETYTKGADR 328 G + + G K+ + Y+ A + Sbjct: 288 GVDLYTVGGVLGHKSAVSTKRYSHLATQ 315 >gi|299141363|ref|ZP_07034500.1| transposase [Prevotella oris C735] gi|298577323|gb|EFI49192.1| transposase [Prevotella oris C735] Length = 389 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 32/274 (11%), Positives = 76/274 (27%), Gaps = 10/274 (3%) Query: 58 REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117 + K + I ++ ++ + + + + R +T+ Sbjct: 105 AAKPKTKVKPSISF---IEYMKEHIEAEDISEGTLKHKQCTLNALKRFGKIQKLTDLTSN 161 Query: 118 HIRSGVESRKHTPSS---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 ++ + E S + ++ + + ++P V+ + + + P Sbjct: 162 NLIAFDEWLHDGTRSDVGIHTYHKHLKKYCHLLYIEGKIKVDPYTQVKFKRGECKEREPL 221 Query: 175 TKEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 T+ ++Q+ + + R F F Y+GL D + K Sbjct: 222 TEAELQKLRKIKLDDKLDKVRDLFVFSAYTGLAYCDVQAFDFEK--MTEQQGKLYYIDGS 279 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKF 292 F +L + + K + A K + H R Sbjct: 280 RIKTASKFFTPILGPAMEVLKKYKFVLPKISNQKANDFLHLIEAALKLNKPLTFHIARHS 339 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA 326 AT++ + G K + + Y K Sbjct: 340 FATLALAHDIPIENVSRMLGHKNIRTTQIYAKVL 373 >gi|217968717|ref|YP_002353951.1| integrase [Thauera sp. MZ1T] gi|217506044|gb|ACK53055.1| integrase family protein [Thauera sp. MZ1T] Length = 291 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 39/270 (14%), Positives = 84/270 (31%), Gaps = 23/270 (8%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130 L L ++ ++ + R G T + +R+ +P Sbjct: 11 LRQRMLDDMRMRKLTPKTQSAYIRAVCRFTRYLGRAP-DSATVEDLRNYQLHLVDTGTSP 69 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 S ++ ++ F +++ + +P R + + + Sbjct: 70 MSLNAAISGLKFFFDITLQRGELMARM-----QPVRLPQRLPVVLSREEVARLIAACNNL 124 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMT 248 + + A +GLR S+ V + + +++ K L ++ L + Sbjct: 125 KHQTALSLAYATGLRASEVVSLKVSDVDSGRMTLRVEQGKGRKDRYAMLSPLLLERLRVW 184 Query: 249 PIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATI 296 F N + ++ Q + +A A AG++K H +R AT Sbjct: 185 WRVARAQGKMLDGGWLFPGLNPIESLSPRQLNRAVQAAALAAGIDKRVSMHTLRHCFATH 244 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326 + + A G K +D YT+ A Sbjct: 245 LLEQKVDIRIIQALLGHKKLDTTVIYTQVA 274 >gi|153815865|ref|ZP_01968533.1| hypothetical protein RUMTOR_02110 [Ruminococcus torques ATCC 27756] gi|145846890|gb|EDK23808.1| hypothetical protein RUMTOR_02110 [Ruminococcus torques ATCC 27756] Length = 400 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 52/371 (14%), Positives = 107/371 (28%), Gaps = 68/371 (18%) Query: 19 GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78 G+ I F G+R L + A+ + E+ + + TL + Sbjct: 20 GRYIARFTSKTGKRKTLYDFKLNELKRKLREAVY----EDEHGLNGNGESITLNAWYVTW 75 Query: 79 RKSAHWGSLAVNSR-ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAI 134 + ++ + + + Y ++ G + I T H++ + + + Sbjct: 76 TELYKKKTVKMTTIYKNHSYYNARVKNSIGKMYLQDIKTYHVQKFINELIDSGLAHGTVS 135 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194 + +F AV EY+ NPC++VE P + + R T+E+ ++F +F S + Sbjct: 136 NIRFMLSDMFDKAVLSEYIRKNPCIAVEMPPKVKKERRVLTREEQKKFFTFASSYIHINV 195 Query: 195 AFEFLLYSGLRCSDSCRAGVQH-------------------------------------- 216 F + +G R + + Sbjct: 196 LK-FAVTTGCRIGEVLGLKWEDCDFEKREITINKTIHYSKASSPVEGSKFFYTTAKTISS 254 Query: 217 ---LQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273 + + + I E + + F +D + + Sbjct: 255 NRVIPMTDEVYEILQNQKIKQTEQKMWKRSIWKQHKEFQNLVFTCSDGSPVYYYNVNSAI 314 Query: 274 KAKATKAGV------------NK-----SAHGVRKFSATISADAGATAHELMATYGWKTV 316 K K V K + H +R AT + G + G T+ Sbjct: 315 KDYVAKINVIEIELAKEEKREPKIFELFTCHTLRHTYATRCYENGVDQQVVQKLLGHSTL 374 Query: 317 DQ-AETYTKGA 326 + YT + Sbjct: 375 AMTTDLYTHVS 385 >gi|37527560|ref|NP_930904.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens subsp. laumondii TTO1] gi|37527568|ref|NP_930912.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786995|emb|CAE16069.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787003|emb|CAE16077.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 376 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 53/304 (17%), Positives = 95/304 (31%), Gaps = 32/304 (10%) Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIR 120 P P +L L+ + S + ++ + + G + IT + Sbjct: 24 PAHDPKSLYALLLRFVVWRQERSWSESTLKVQTHHTYHFILWATERGLYYAADITRPILE 83 Query: 121 SGVESRKH---------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 + + L ++V FKW +Q + NP +E P+ + Sbjct: 84 RYQRYLYQYRKTNGEPLSTRTQRTQLEPLKVWFKWLTKQNLILANPAADIELPRLEKHLP 143 Query: 172 RPW-----TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSI 224 R T++ + Q +G + R E L +G+R + R V + +I Sbjct: 144 RYILTIDETEQILAQPDLTTLQGIRDRALMELLWSTGMRRGELTRLDVYSVDGKRKTVTI 203 Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM-----------NATQFSIWF 273 + K + L + + L I N K A S Sbjct: 204 RQGKGNKDRVLPLGERALSWLQRYQQQVRPQLIVNPDVKALFVAMDGLDGLQANGISNLV 263 Query: 274 KAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 A G+ K H R AT + GA + A G +V+ + YT+ + R Sbjct: 264 TAYINAVGIEKKGACHLFRHAMATQMLENGADLRWIQAMLGHASVESTQVYTQVSIRALQ 323 Query: 332 GIKN 335 + Sbjct: 324 AVHA 327 >gi|290959113|ref|YP_003490295.1| prophage integrase [Streptomyces scabiei 87.22] gi|260648639|emb|CBG71751.1| putative prophage integrase [Streptomyces scabiei 87.22] Length = 380 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 46/369 (12%), Positives = 97/369 (26%), Gaps = 38/369 (10%) Query: 1 MTPSLRLPPFVTKERT-RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE 59 M + + R G+ + G ++ A + Sbjct: 1 MAGKRKSRRNFGRVRKLPSGRFQARYPGPDGVLRPADRTFATSTDADRWLAKKRIEIEDG 60 Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTKH 118 P + TT++ + + + L ++ S+ S + +I GD + + Sbjct: 61 RWLDPAEGQTTVRDWAARWLAAVSPQ-LKHKTQASYRSLINSLINPTLGDRELSGLRPIT 119 Query: 119 IRSGVESRKHTPSSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 + V S SA + + + + AV + + PC V+ P+ T Sbjct: 120 VTEWVASMNTRGLSASRIRQAYRVLSQIMRAAVDNDMIPQTPCRGVKLPRMPQTEPHILT 179 Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS------------ 223 + + ++ +A Y+GLR ++ + + Sbjct: 180 PLEASRIVRSAAKPHDVLIALL--AYAGLRVGEAFALRRVDIDVSGGFVLVDENLAEANG 237 Query: 224 ---IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI------WFK 274 T K+ + + K L +F Sbjct: 238 ALVFDTPKSHQKRLLRVGPALAKRLGRHLETLSGGDDALLFTTPGGKPLRYNQWRKAYFD 297 Query: 275 AKATKAGV-NKSAHGVRKFSATISADA-GATAHELMATYGWKTVD-QAETYTKGA----D 327 + AG+ + + H +R T AD G G Y + D Sbjct: 298 PAVSAAGLTDVTPHDLRASHGTWVADRYGV--MTAAHRLGHSNASVTTRHYARPVAGRDD 355 Query: 328 RIRLGIKNS 336 ++ Sbjct: 356 QVAEAADAW 364 >gi|147678470|ref|YP_001212685.1| integrase [Pelotomaculum thermopropionicum SI] gi|146274567|dbj|BAF60316.1| integrase [Pelotomaculum thermopropionicum SI] Length = 314 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 33/288 (11%), Positives = 86/288 (29%), Gaps = 15/288 (5%) Query: 55 TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI 114 K++ ++ P T + + + LA + + + Q + K Sbjct: 1 MAKKKVATVRKEVPDTWQEALQGFLFWKQAQGLAERTLTDYRKHVSQFFNRHPKAYNSKN 60 Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 + + P++ L +++ F W +++ NP +R K + + Sbjct: 61 LKSAVLEYMAQ-PVKPATFNLRLVNLKAFFDWCIQEGIFTDNPLAGFKRRKAEGRVVNIE 119 Query: 175 TKEDMQQ---FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----NNIFSIKTQ 227 ++ + G + L +G+R ++ V + + Sbjct: 120 EEKLARLLTLPNKETFAGLRDYALLLLTLDTGIRPKEAFSLLVDDINLRSLEVCIRSEIA 179 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-------FSIWFKAKATKA 280 KT T T+ + +++ + + N+ ++ + + + + Sbjct: 180 KTRTTRTLPISPVTAQVIRELLQSRHPAWKNSTPVFCSSEGGKMTDLKWGDRLEVYSKQL 239 Query: 281 GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 GV + +R A G L G + + Y + Sbjct: 240 GVWIRPYDLRHAFALQFLRNGGQPFALQRILGHTDLTMTKRYIALTQQ 287 >gi|319637821|ref|ZP_07992587.1| tyrosine recombinase xerD [Neisseria mucosa C102] gi|317400976|gb|EFV81631.1| tyrosine recombinase xerD [Neisseria mucosa C102] Length = 215 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 73/201 (36%), Gaps = 16/201 (7%) Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFEF 198 ++ W A NP ++ PK + + T+ + + G + + E Sbjct: 1 MYGWLEETGQRADNPTRFLKAPKSERKLPTLITEAQIDALLAAPDVETPHGLRDKALLEV 60 Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-----------TGTIITVELPDGFMKLLAM 247 + +GLR +++ + + + + SI+T VE + L + Sbjct: 61 MYATGLRVTEAVKLTLSDIDLHRGSIRTIGKGDKLRLVPLGQEAAYWVERYCNESRPLLL 120 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHE 306 + F++ + ++ + K A AG+ + S HG+R AT + G Sbjct: 121 KNKICDEVFVSQKRSGISRQLAWMIVKEYAEAAGIASLSPHGLRHAFATHLVNHGVDLRS 180 Query: 307 LMATYGWKTVDQAETYTKGAD 327 + G ++ + YT A+ Sbjct: 181 VQMMLGHSDINTTQIYTHVAN 201 >gi|315173229|gb|EFU17246.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX1346] Length = 382 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 51/375 (13%), Positives = 118/375 (31%), Gaps = 43/375 (11%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP---- 64 +V + G + +R + ++ + +A + + + Sbjct: 11 KYVFSYSNKKG-TFWGYRYPYYNSLKHRKEASKRGFESERAANKALLKIQYALETQNTSF 69 Query: 65 -RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKI-----TTK 117 K T+ I + A + +V+++ + ES I G+ + + Sbjct: 70 IENKQLTIDEWIDVWIPYAQ-DNWSVSTKQNIESAIKFHISPLIGNQKLASLNKITYKRE 128 Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 I + K+T S+ + + + AV + + N + E Sbjct: 129 FIDKLRQENKYTESTIQTWHKIVMRMINAAVHNQIIPSNTLTGFKF-DLSNNVRSFSKNE 187 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI------------K 225 + + +E Q ++ F LL SG+R + + K Sbjct: 188 LQRFVAALENEDIQTQVIFLTLLKSGMRKGELMGLRWSDIDLTEKYFDINSTRGDYGENK 247 Query: 226 TQKTGTIITVELPDGFMKLLAMTPIG--------------KETFFINNDKQKMNATQFSI 271 + +I V + + L+ K+ F +++ + ++ + Sbjct: 248 PKTKTSIRKVYFDNSLLTLIKKYKNHEKERLLKEGIILKDKDYFILSSRNLPIKQSRITY 307 Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA-DR 328 F+ KA V N + HG+R AT +AGA + G K ++ + Y+ + Sbjct: 308 MFRLLCEKAEVQNITVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVYSDVLKEE 367 Query: 329 IRLGIKNSRRISSVV 343 + ++ + Sbjct: 368 EKETADMMDKLIENL 382 >gi|239981603|ref|ZP_04704127.1| integrase [Streptomyces albus J1074] Length = 382 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 56/382 (14%), Positives = 110/382 (28%), Gaps = 40/382 (10%) Query: 2 TPSLRLPPFV-TKERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKR 58 P R P T + + G+ Y + G R R ++ K Sbjct: 3 APRKRNPNGAGTITKRKDGRYQCAVYVLQPDGTRARKFAYGKT--WAECDVKRRELLAKV 60 Query: 59 EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTK 117 + K L + + + +++ +E++ ++ G + Sbjct: 61 DQGVPVPTKSAKLSEWLPYWLDNVIKPRRKLSTYDKYEAHARLYLVPLLGAKRLESLGVA 120 Query: 118 HIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 +R + + T ++A + +R A R+E + N VE P+ ++PWT Sbjct: 121 DVRRFIVRLEKETTAATAKESHRVLRSALSSACREELITRNVAKLVEPPRTVNRELKPWT 180 Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--- 232 ++ F + + AF + GLR + L + + ++ Sbjct: 181 LDETLDFLAASRKDP-LYAAFVLAIAMGLRRGEIIGLRWSDLDLDNRVLYVRQQTQRRRG 239 Query: 233 -------------------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT 267 + ++ A F +++ Sbjct: 240 VLYDDDPKSRRRRAVPLPALCIAPLRWHRMRQAAARVKAGEWQESGYVFTTRTGRQVEPR 299 Query: 268 QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKG 325 F A AG+ H R +AT+ AG +M G + YT Sbjct: 300 NVYRSFTRVAESAGLRVIRLHDARHGTATLLTAAGVAPRVVMEILGHSQISITMDVYTHV 359 Query: 326 A-DRIRLGIKNSRRISSVVDSD 346 D R I + R+ S Sbjct: 360 VQDTQREAISHMDRLLKRRPSR 381 >gi|167620939|ref|ZP_02389570.1| putative integrase/recombinase [Burkholderia thailandensis Bt4] Length = 342 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 41/332 (12%), Positives = 102/332 (30%), Gaps = 13/332 (3%) Query: 21 IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK 80 R+ + + +++ + +++ + TT L+ Y Sbjct: 12 YQAQVRRKGYP-TQTKTFETKKAAEKWATSVENEMNRGSFVDRSELETTTFGELLDRYAV 70 Query: 81 SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLT 138 + + + + + S R +P++ + + Sbjct: 71 EVTTAKRGRETEMVRIRALKK--HPLAARTLASLRSMDFASYRNERLKTCSPATVKREMV 128 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198 + +F A + + + L+ R+ + ++D + + S+ Sbjct: 129 IISHVFTHANNEWSLPVGNPLAGIAKPREKDHRERRLRDDEESRLVEAAHNSRAATLSFC 188 Query: 199 L---LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255 + + +G+R + + + + +I+ T +P A+ + + Sbjct: 189 IVLAIETGMRAGEIVKLRWEQIDLANHTIRLNLTKNGHARSVPLSERAEAAIRALPRSIH 248 Query: 256 FINNDKQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSATISADAGATAHELMATYGWK 314 + S F+ +AG V H +R +A+ A A L GWK Sbjct: 249 GGRLTSFYDSR-GLSAAFRRACERAGVVGLRFHDLRHEAASRLAPH-MPASTLAKVMGWK 306 Query: 315 TVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346 T+ A Y D+ + R++S+ D Sbjct: 307 TLQMAMRYYNPTDQE--LVTAVRKVSAPSGPD 336 >gi|37680125|ref|NP_934734.1| super-integron integrase IntIA [Vibrio vulnificus YJ016] gi|37198871|dbj|BAC94705.1| super-integron integrase IntIA [Vibrio vulnificus YJ016] Length = 320 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 39/300 (13%), Positives = 82/300 (27%), Gaps = 53/300 (17%) Query: 80 KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT- 138 A + ++ S+ Q I + KH+ + A + Sbjct: 11 DHMRTRHYATKTIQAYISWIKQYIYFHRMAHPSTLNEKHVEEFLTHLAVEQKVAAKTQAL 70 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198 ++ + +N + ++ + TK +++ F + +L Sbjct: 71 ALNSVLFLYREYFRTPLNNEIKFQKSLLDRKLPVVLTKPELRAFIQH--IDPRYKLHIML 128 Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQK------------------------------ 228 L SGLR + R +Q + + +++ + Sbjct: 129 LYGSGLRVMECVRLRIQDIDYHYGALRVWQGKGGKNRTVTLAKELYPLLKEQEALALRYY 188 Query: 229 ------------------TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS 270 E+ + L + ++ + +N Sbjct: 189 QKDRITAGYAGVWLSSSLQRKYQGAEMDFNWHYLFPSDRLSRDPESDLLRRHHINEQALQ 248 Query: 271 IWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 K A AG+ KS H +R AT ++GA + G V + YT +R Sbjct: 249 RAVKRAAKDAGITKSISCHTLRHSFATHLLESGADIRTVQEQLGHSDVKTTQIYTHVLER 308 >gi|317057903|ref|YP_004106370.1| integrase family protein [Ruminococcus albus 7] gi|315450172|gb|ADU23736.1| integrase family protein [Ruminococcus albus 7] Length = 324 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 39/322 (12%), Positives = 88/322 (27%), Gaps = 45/322 (13%) Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSG 122 ++ T++ ++++ + SL +S E + I G +K+T I+ Sbjct: 4 EKQSNNTVEEYMTKWLINTKRPSLKRSSYDRVEQSLNYQIFPAIGKIKLKKLTADDIQMM 63 Query: 123 VESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + + + + S+ + +++ AV + + NP LSV PK Q Sbjct: 64 LNNLSERSSYSTTKKAYVNLKSCLDLAVLKGDIKKNPILSVVLPKNNKSDETVVYYSPEQ 123 Query: 181 QFKSFWSEGS---------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 S + F+L +GLR ++ + + + + Sbjct: 124 ARAIAAEAISTYNNGSFKYRYGYFIVFMLNTGLRVGEALALSWSDVDFTNKIVYVHNSVS 183 Query: 232 I------------------------ITVELPDGFMKLLAMTPIGKETFFINNDKQK---M 264 V L + L + + Sbjct: 184 SVKTRGDSSMKYEKIVNSPKSRNSVRYVPLNKTALDALVKIHAIMGDNDRIVTTENGLLV 243 Query: 265 NATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321 + + G+N H +R AT+ G + G + Sbjct: 244 DPSAIHRTMSRILKNCGINGKKDIVHALRHTFATLLLRQGTDIKVVSEILGHSDISITMK 303 Query: 322 -YTKGADRIRLGIKNSRRISSV 342 Y + + ++ + Sbjct: 304 FYYHVIEEQK--KTAMTKLDEI 323 >gi|226951511|ref|ZP_03821975.1| phage integrase [Acinetobacter sp. ATCC 27244] gi|226837747|gb|EEH70130.1| phage integrase [Acinetobacter sp. ATCC 27244] Length = 402 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 56/386 (14%), Positives = 105/386 (27%), Gaps = 55/386 (14%) Query: 2 TPSLRLPPFVTKERTRHGKIIYYFRKGHGR-RIRLPYPHESTFIPAYMSALTG------- 53 T LP R R GKI F+ R L Sbjct: 4 TSRTGLPTG---TRARSGKIQINFKWNGKREWFTLALTDTPANFSKAAKIREDFVNKAKY 60 Query: 54 ----------------STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFES 97 + P T EY + ++ + S Sbjct: 61 GILKIEDIEAVTVKPFKKADAAQESLPASHGPTFAQYAQEYL--YNLSDHKHGTKKKYLS 118 Query: 98 YFDQI-IRKSGDFDYRKITTKHIRSGVESRKHT-PSSAIQFLTSMRVLFKWAVRQEYVAI 155 +++ + D I+++ +RS V R+ + + L +R F+ A E + Sbjct: 119 ILERLWMPLFADMPINTISSQMLRSAVNGREWSSAKTRNDALIPLRGAFELANDDEIIDK 178 Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-----GSQPRLAFEFLLYSGLRCSDSC 210 NPC ++ K + P+ + + ++ ++ E F ++G R S+ Sbjct: 179 NPCDRLKNQKTQETEPDPFNEIERERILNWLREKYLADYPTVYWYFVVAFWTGCRPSEII 238 Query: 211 RAGVQHLQNNIFSIKTQK------------TGTIITV------ELPDGFMKLLAMTPIGK 252 Q + I K T V ++LL Sbjct: 239 ALTWQDVDFLNKQIHINKGRVNGVQQETTKTNKARFVDLNDFAFEAFQQLRLLTYLKYEH 298 Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA-HGVRKFSATISADAGATAHELMATY 311 ++ S F A G+ + R AT+ G + + Sbjct: 299 VFICDETGEEFTTQKSLSEKFVAALKANGIRYRPAYNTRHTYATVCLMNGLNPVYVASQL 358 Query: 312 GWKTVDQAETYTKGADRIRLGIKNSR 337 G V + Y K + + + ++ Sbjct: 359 GHSLVMLMKRYAKWINSDKNKEEIAK 384 >gi|322831910|ref|YP_004211937.1| integrase family protein [Rahnella sp. Y9602] gi|321167111|gb|ADW72810.1| integrase family protein [Rahnella sp. Y9602] Length = 328 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 46/302 (15%), Positives = 91/302 (30%), Gaps = 16/302 (5%) Query: 29 HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA 88 G+RIR + + + + +++ L L+S + + Sbjct: 21 DGKRIR-RKFNTKGEAQIFERYIIARYQDKAWLDKS-ADRRKLTELLSLWWVYHGKHHVR 78 Query: 89 -VNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMRVLF 144 R S + + G ++T K I R + P+S + + +F Sbjct: 79 GEIDRSRLHSIVNHLSE-MGVTRADQLTHKAIIDYRIMMLDLGLKPASVNRHQAILSGMF 137 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204 + + R+ + D + EG ++A L +G Sbjct: 138 TKLISAGEYHNAHPFREVKKLREGTTEMAYLTTDEIKALLQTLEGDNLKVAQLC-LATGG 196 Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264 R + +H+ N+ + K G +V + D ++ + G+ Sbjct: 197 RWGEVSNLKGEHIIKNVITFMKTKNGKRRSVPVSDELVRAIKTKASGRLFVS-------- 248 Query: 265 NATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 N + + ++AH +R AT G L G T+ Q TY Sbjct: 249 NYNTVRMTLRKVKPDLPKGQAAHVLRHTFATHFMMNGGNIITLQRVLGHATIQQTMTYAH 308 Query: 325 GA 326 A Sbjct: 309 FA 310 >gi|320321214|gb|EFW77351.1| phage integrase family site specific recombinase [Pseudomonas syringae pv. glycinea str. B076] Length = 320 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 42/271 (15%), Positives = 85/271 (31%), Gaps = 31/271 (11%) Query: 89 VNSRISFESYFDQIIRKSG---DFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRV 142 +R ++++ G D+R++T H+ + + ++ + L ++ Sbjct: 39 PRTRRAYQNDLTDFSSFIGLASADDFRQVTRSHVLAWRADLEQRGLAGATIRRKLAALAS 98 Query: 143 LFKWAVRQEYV---AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLA 195 LF + V + R + + E G + R Sbjct: 99 LFDHLLDNNAVAGGNPVHGVKRPRIESNEGKTPALGDHQAKALLEAPDESTLKGRRDRAM 158 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---------------IITVELPDG 240 LLY GLR ++ + V +Q + G I + L Sbjct: 159 LAVLLYHGLRREEAAQLQVSDIQERRGIQHLKIHGKGGKVRYLPLHPVAAGRIHLYLERS 218 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATIS 297 L + + ++A +A A KAG+ HG+R +AT + Sbjct: 219 GHHLDDKKVPLFISLRGKSTGAGVSANGIYTVVEAYAKKAGIEVDGLGVHGLRATAATNA 278 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADR 328 + A ++ A G + + Y + +R Sbjct: 279 LEHEADIAKVQAWLGHANISTTKIYDRRENR 309 >gi|317501739|ref|ZP_07959926.1| phage integrase [Lachnospiraceae bacterium 8_1_57FAA] gi|316896861|gb|EFV18945.1| phage integrase [Lachnospiraceae bacterium 8_1_57FAA] Length = 350 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 54/361 (14%), Positives = 105/361 (29%), Gaps = 39/361 (10%) Query: 12 TKERTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 K++T+ G FR G++ + T A + Sbjct: 4 YKDKTQ-GTWYVSFRYIDWTGKKTQKLKRGFKTKKEALNYEKEFIRKTAADMKMEMNS-- 60 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH 128 I Y + L NS + + I+ G +IT I + + Sbjct: 61 ----FIQVYFEDKK-NELKENSIRNKQHMMNKHIVPYFGTRKMNEITPAEIIQWQNTIQE 115 Query: 129 TPSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERP-KRKTEGIRPWTKEDMQQFKS 184 S + LF A + + NPC V++ K + WTK + +F + Sbjct: 116 KGYSKTYERMIQNQLNALFNHAQKIYNLKENPCKKVKKMGKSDANKLEFWTKAEYDRFIA 175 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSD----------------SCRAGVQHLQNNIFSIKTQK 228 GS+ L FE L ++G+R + ++ + Sbjct: 176 GIEPGSEDYLIFEILFWTGIREGELLALSLLDFDMSGNLLHINKTYNRIRKRDVIDTPKT 235 Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAH 287 ++ T+++P+ + + F + + A K V H Sbjct: 236 ENSVRTIDIPNFLKEEVQEYAKKHYGFPEDQRLFPIVARTLQKRLKKYEALTSVKPIRVH 295 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVDSD 346 +R G + G K + TY L ++++ ++D+ Sbjct: 296 DIRHSHVAYLIYQGVEPLIIKERLGHKDIQMTLNTYGH------LYPSQQKKVAEMLDNK 349 Query: 347 D 347 Sbjct: 350 R 350 >gi|296169264|ref|ZP_06850912.1| prophage integrase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896069|gb|EFG75740.1| prophage integrase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 363 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 51/345 (14%), Positives = 107/345 (31%), Gaps = 34/345 (9%) Query: 11 VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 + + T+ G + Y + R + + A + PR Sbjct: 3 IKRRETKDG-VRYDVQWRLPDRSKRKKSFRTEREARQFEARLVTDSAAGVRVDPRGGKIL 61 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT 129 L+ + + S L+ R +E + +I + G + +I + I+ V + + Sbjct: 62 LRNVYRSWLASR--PDLSAKVRRGYEDNWRLRIEPQFGSWPIARIDHESIQRWVNAMSAS 119 Query: 130 ---PSSAIQFLTSMRVLFKWAVRQEYV-AINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 P + + +++ AV ++ + NP + P + T ++ Sbjct: 120 GLGPRTVRWTHSVLKMTLDRAVEEDQLLGKNPASRTKFPPMRQATHVYLTVGEVATLAQT 179 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-------------- 231 L Y+GLR + V+ + I+ +++ T Sbjct: 180 CGAQGDVVLLL---AYTGLRFGELTGLNVEDVDLGARRIRVRRSMTQVGGKLVEGNPKSQ 236 Query: 232 --IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW-----FKAKATKAGVN- 283 +V +P+ M L + K + W ++ T+ G + Sbjct: 237 AGRRSVPIPERLMPALKARLDARPCGAPAIASPKGSRLSLENWKRAVNWRKSVTEIGRDN 296 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKGAD 327 H +R A++S AGA L G ++ Y D Sbjct: 297 LRVHDLRHTYASLSRRAGADLRLLQKAMGHASITVTAHTYADLFD 341 >gi|295189228|gb|ADF83415.1| putative integrase [Lactobacillus phage LBR48] Length = 394 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 48/356 (13%), Positives = 102/356 (28%), Gaps = 46/356 (12%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 +R K YF+ HG+R T A +A + + K + Sbjct: 6 KRGDSWKAKVYFKDIHGKRTSRSQEGFRTKKEAEAAARVMED-TYKNGSDVGDKNISFSD 64 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG---------VE 124 ++ L+ + ++ + I GD +RKI T + + Sbjct: 65 YFQKWFHIFREPGLSDTTIARYQYTINVIDEYFGDTLFRKIKTADYQEFLNWFGNGNGKD 124 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR--KTEGIRPWTKED---- 178 ++ H ++A + T +R + AV ++ + + +T I+ + +D Sbjct: 125 AKPHAKATADKINTHIRAAVRNAVNDSVISRDFTQNTHVVYDSSRTREIKWLSYDDAAKL 184 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------ 232 + L +G+R + + + IK KT Sbjct: 185 YNYTLNHLEGIDVVPYMVLTALLTGMRQQEIAGLTWDDIDSKGGFIKITKTWNWTKRDFG 244 Query: 233 -------------------ITVELPDGFMKLLAMTPIGKETFFIN--NDKQKMNATQFSI 271 I +L + L + + + ++ + Sbjct: 245 PTKNPASVRTISIDRNLVNILTKLQYEQKRYLKVNDKTNPHSLVFLSRYNRVPSSKALND 304 Query: 272 WFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK 324 A +N HG+R A+I + + G + + +TY Sbjct: 305 RLHELMKDADINIYLRFHGLRHTHASILLYQKMSIAYISHRLGHQDIATTTKTYLH 360 >gi|237794996|ref|YP_002862548.1| site-specific recombinase, phage integrase family [Clostridium botulinum Ba4 str. 657] gi|229261916|gb|ACQ52949.1| site-specific recombinase, phage integrase family [Clostridium botulinum Ba4 str. 657] Length = 357 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 31/295 (10%), Positives = 81/295 (27%), Gaps = 26/295 (8%) Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE---S 125 T I + + + + + +++ + + I HI++ V+ Sbjct: 68 ITFAEFIDIHLQHISLH-VEPYTLVGYKTALKKFKSLY-NMKICDIKQIHIQNCVDDLVK 125 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + ++ + +F A+ Q + NP ++ K + + + Sbjct: 126 MNLKDYTIKTYIQKLTAIFNSAINQYQIIITNPVKNIRYIPNKNKNEKKVLNDTELNDLL 185 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------------- 231 E Q + GLR + ++ +I K Sbjct: 186 SKIENKQYYIMTLLASKCGLRIGEILGLTWDNIDEINKTIIVNKQWKLNKDGKFGFGELK 245 Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW--FKAKATKAGVNKSAHGV 289 K++ + +++ S + + + G + S H + Sbjct: 246 SKNSYRKVPCPKIIFTYLKTYKKVVNIDNRIVNYKNTISTASNIRREYKQLGYDISIHEL 305 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVV 343 R AT + G ++ Y+ D ++++ I + Sbjct: 306 RHTYATKLISSRMDFKTAANILGH-DIEMTMKIYSHVTDE---MMEHATNIIEKI 356 >gi|318603813|emb|CBY25311.1| integrase [Yersinia enterocolitica subsp. palearctica Y11] Length = 284 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 35/273 (12%), Positives = 80/273 (29%), Gaps = 15/273 (5%) Query: 55 TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI 114 ++ + R L L+ + H +L + + + + + GD ++ Sbjct: 3 NANKKEWSDKRLDRRLLSDLVETWWL-YHGQNLKNGTIE--KRHLMKTLTALGDKAVSQL 59 Query: 115 TTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 T + + R + ++ + L + +F ++ E + L P + Sbjct: 60 TKRELMEHRSQRLADGISAATINRDLYRLSGMFSALIKIEEFSGQNPLHGLPPLAEKNPG 119 Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 + + G RL L +G R + + NN + K G Sbjct: 120 MTFLDAEEINRLLAVLSG-DERLIALLCLSTGGRWGEVSTLTAAQVVNNRVTFLETKNGK 178 Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRK 291 T+ ++ + + K++ +F + ++ H +R Sbjct: 179 KRTIP--------ISAELEKEVKTNASRKLFKVDYGKFCETLRMVKPDLPRGQATHVLRH 230 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324 A+ G L G + Q Y Sbjct: 231 TFASHFMMNGGNIIALQQILGHANIQQTMAYAH 263 >gi|210616044|ref|ZP_03290916.1| hypothetical protein CLONEX_03135 [Clostridium nexile DSM 1787] gi|210149952|gb|EEA80961.1| hypothetical protein CLONEX_03135 [Clostridium nexile DSM 1787] Length = 400 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 52/371 (14%), Positives = 107/371 (28%), Gaps = 68/371 (18%) Query: 19 GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78 G+ I F G+R L + A+ + E+ + + TL + Sbjct: 20 GRYIARFTSKTGKRKTLYDFKLNELKRKLREAVY----EDEHGLNGNGESITLNAWYVTW 75 Query: 79 RKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAI 134 + ++ + + SY++ ++ G + I T H++ + + + Sbjct: 76 TELYKKKTVKMTTIYKNHSYYNSRVKNSIGKMYLQDIKTYHVQKFLNDLIDSGLAHGTVS 135 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194 + + AV EY+ NPC+ VE PK + R T+E+ ++F +F S + Sbjct: 136 NIRFMLSDMLDKAVLSEYIRKNPCIGVEMPKEVKKERRVLTREEQEKFFTFASSYIHINV 195 Query: 195 AFEFLLYSGLRCSDSCRAGVQH-------------------------------------- 216 F + +G R + + Sbjct: 196 LK-FAVTTGCRIGEVLGLKWEDCDFEKREIIINKTIHYSKASSPVEGSKFFYTTAKTISS 254 Query: 217 ---LQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273 + + + + E + + F +D + + Sbjct: 255 NRVIPMTDEVYEILQNQKMKQTEQKMWKRSIWKQHKEFQNLVFTCSDGSPVYYYNVNSAI 314 Query: 274 KAKATKAGV------------NK-----SAHGVRKFSATISADAGATAHELMATYGWKTV 316 K K V K + H +R AT + G + G T+ Sbjct: 315 KDYVEKINVIEIELAKEEKREPKIFELFTCHTLRHTYATRCYENGVDQQVVQKLLGHSTL 374 Query: 317 DQ-AETYTKGA 326 + YT + Sbjct: 375 AMTTDLYTHVS 385 >gi|154245579|ref|YP_001416537.1| integrase family protein [Xanthobacter autotrophicus Py2] gi|154159664|gb|ABS66880.1| integrase family protein [Xanthobacter autotrophicus Py2] Length = 354 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 47/310 (15%), Positives = 77/310 (24%), Gaps = 25/310 (8%) Query: 35 LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRIS 94 + + AY LT ++ I Y A + Sbjct: 41 IERGGGPNTLDAYRRDLTDLAEFLAPVSLAEADT----SAIRAYLADLSARGFAATTVAR 96 Query: 95 FESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA 154 S Q R +R + G + + P + L+ + + Sbjct: 97 RLSALRQFYRFLFAEGHRADDPAAVLEGPKRGRPLP----KVLSV--AEVTRLIDTAHAR 150 Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRA 212 + EG T R+A L SGLR S+ Sbjct: 151 AAQAEESLNAGQGGEGQGEETPGAGAAKAGRAELLRLRRVACMVELLYASGLRVSELVAL 210 Query: 213 GVQHLQNNIFSI-KTQKTGTIITVELPDGFMKLLAMT---------PIGKETFFINNDKQ 262 + +I T K V L + + F ++ Sbjct: 211 PAAAARAQGEAILVTGKGRKERLVPLSGPAKVAMQAFLAARRAAGLEASRWLFPSGSESG 270 Query: 263 KMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 + Q + K A AG++ S H +R A+ GA + G V Sbjct: 271 HVTRQQAARDLKELALAAGLDPAKLSPHVLRHAFASHLLAHGADLRVVQTLLGHADVSTT 330 Query: 320 ETYTKGADRI 329 + YT D Sbjct: 331 QIYTHVLDER 340 >gi|317473155|ref|ZP_07932453.1| phage integrase [Anaerostipes sp. 3_2_56FAA] gi|316899379|gb|EFV21395.1| phage integrase [Anaerostipes sp. 3_2_56FAA] Length = 297 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 46/297 (15%), Positives = 91/297 (30%), Gaps = 28/297 (9%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE---SR 126 T + ++ S H +A ++ S+ I +I I+ V+ S+ Sbjct: 3 TFYDVSMKWF-SLHELEIAESTAYSYSKNLRFINEYFHGKSIYEIDKNDIQDYVKFLYSK 61 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + + + + F +AV E + NPC + PK + + I P+++ +M++ Sbjct: 62 GCKTDTITNYFKLINMTFNYAVDYEILPKGANPCYKIVIPKTEKQEINPFSETEMEKILK 121 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-------------T 231 +G+R + + + N IK QKT Sbjct: 122 VKCL-PWLYAGEFIAYRTGMRKGEIYALRKKDIDFNGGFIKVQKTQSLTKNAKVILKEPK 180 Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMN-----ATQFSIWFKAKATKAGVNK-S 285 + K+L + N S F A V + + Sbjct: 181 SKSSRRRIACDKILMNFLWNLSNRSESVFLFPNNDTFFVPWNISSAFTDVCEMAKVPRRT 240 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGA-DRIRLGIKNSRRIS 340 H +R AT+ + G ++ TY+ D + +I+ Sbjct: 241 FHELRHTHATVLLSHNVHPKVVQERLGHASIQTTLNTYSHLIPDMQHTAVNVFDKIA 297 >gi|256956495|ref|ZP_05560666.1| site-specific recombinase [Enterococcus faecalis DS5] gi|294780322|ref|ZP_06745691.1| site-specific recombinase, phage integrase family [Enterococcus faecalis PC1.1] gi|256946991|gb|EEU63623.1| site-specific recombinase [Enterococcus faecalis DS5] gi|294452586|gb|EFG21019.1| site-specific recombinase, phage integrase family [Enterococcus faecalis PC1.1] gi|315034593|gb|EFT46525.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0027] Length = 382 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 51/375 (13%), Positives = 118/375 (31%), Gaps = 43/375 (11%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP---- 64 +V + G + +R + ++ + +A + + + Sbjct: 11 KYVFSYSNKKG-TFWGYRYPYYNSLKHRKEASKRGFESERAANKALLKIQYALETQNTSF 69 Query: 65 -RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKI-----TTK 117 K T+ I + A + +V+++ + ES I G+ + + Sbjct: 70 IENKQLTIDEWIDVWIPYAQ-DNWSVSTKQNIESAIKFHISPLIGNQKLSSLNKITYKRE 128 Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 I + K+T S+ + + + AV + + N + E Sbjct: 129 FIDKLRQENKYTESTIQTWHKIVMRMINAAVHNQIIPSNTLTGFKF-DLSNNVRSFSKNE 187 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI------------K 225 + + +E Q ++ F LL SG+R + + K Sbjct: 188 LQRFVAALENEDIQTQVIFLTLLKSGMRKGELMGLRWSDIDLTEKYFDINSTRGDYGENK 247 Query: 226 TQKTGTIITVELPDGFMKLLAMTPIG--------------KETFFINNDKQKMNATQFSI 271 + +I V + + L+ K+ F +++ + ++ + Sbjct: 248 PKTKTSIRKVYFDNSLLTLIKKYKNHEKERLLKEGIILKDKDYFILSSRNLPIKQSRITY 307 Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA-DR 328 F+ KA V N + HG+R AT +AGA + G K ++ + Y+ + Sbjct: 308 MFRLLCEKAEVQNITVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVYSDVLKEE 367 Query: 329 IRLGIKNSRRISSVV 343 + ++ + Sbjct: 368 EKETADMMDKLIENL 382 >gi|189467606|ref|ZP_03016391.1| hypothetical protein BACINT_03996 [Bacteroides intestinalis DSM 17393] gi|189435870|gb|EDV04855.1| hypothetical protein BACINT_03996 [Bacteroides intestinalis DSM 17393] Length = 330 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 32/263 (12%), Positives = 76/263 (28%), Gaps = 12/263 (4%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKH 128 L+ + + + + S Q+++K T ++ K Sbjct: 53 DRLLEIFLSAKQVEGCTTPTIKYYSSTIKQLLKKMPKKVVDYSTEDIRAYLAVFQRKNKS 112 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + + F W ++Y+ +P + + K T+ T E+++ Sbjct: 113 SKVTIDNIRRIFSSFFAWLEEEDYIIKSPIRRIHKVKTGTQVKEILTDENIEH-LRDNCI 171 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLAM 247 + + L +G+R + + + + N I K V L Sbjct: 172 KIRDLAMIDLLASTGMRVGELVKLDREDINFNERECIVFGKGNKERIVYFNARAKIHLQQ 231 Query: 248 TPIGKETFFIN------NDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADA 300 ++ ++ + + +A + H R+ AT++ D Sbjct: 232 YLSTRKDRNKALFVSLAKPHNRLQISGVETRLRKIGRQAKIVRVHPHKFRRTLATMAIDK 291 Query: 301 GATAHELMATYGWKTVDQAETYT 323 G ++ G +D Y Sbjct: 292 GMPVEQVQKLLGHVKIDTTMHYA 314 >gi|224538580|ref|ZP_03679119.1| hypothetical protein BACCELL_03474 [Bacteroides cellulosilyticus DSM 14838] gi|224519804|gb|EEF88909.1| hypothetical protein BACCELL_03474 [Bacteroides cellulosilyticus DSM 14838] Length = 397 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 33/266 (12%), Positives = 71/266 (26%), Gaps = 18/266 (6%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137 +++ L +++ + S + + + +T + + S + Sbjct: 114 FKQEVMTSGLKESTKRNHLSTLALLQDFKKNVTFSDLTFEFVSSFEYFLQSKGYHTNTIA 173 Query: 138 TSMRVLFKWAV-----RQEYVAINPCLSVERPK----RKTEGIRPWTKEDMQQFKSFWSE 188 M+ L + + + K + Q + + Sbjct: 174 KHMKHLKRHINVAINKEYMDIQKYAFRKYKIKTVENGHTHLAPEELEKMETLQLTGRYIK 233 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248 + AF F Y+G+R SD +++ I L Sbjct: 234 YQKTLDAFLFCCYAGMRYSDFVNMKPENIVEMHQET--WLIYKSIKTGTEVRLPLYLLFN 291 Query: 249 PI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAG 301 K + + + + + AG+ S H R +AT+ G Sbjct: 292 GKGIQILNKYQANLQDFFHLRDNSNVNKELIIITRLAGLSKKVSFHTARHTNATLLIYNG 351 Query: 302 ATAHELMATYGWKTVDQAETYTKGAD 327 + G K+V + YT D Sbjct: 352 VNITTVQKLLGHKSVKTTQIYTNVMD 377 >gi|331006573|ref|ZP_08329863.1| Integrase [gamma proteobacterium IMCC1989] gi|330419606|gb|EGG93982.1| Integrase [gamma proteobacterium IMCC1989] Length = 328 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 84/302 (27%), Gaps = 15/302 (4%) Query: 28 GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87 +G+RI+ + L + + +L L+ + S Sbjct: 20 RNGKRIKRIRNTKKECRLLEADILREFASVPDKFA---RDNRSLIDLVDLWYSSHGHTLK 76 Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFK 145 R + + + + + T++ + R + S+ +R +F Sbjct: 77 DAKYR--YSRTL-ALCDRLSNPSVSEFTSEVFSIYRQRRLSDVSVSTVNHETRYLRSVFN 133 Query: 146 WAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF--LLYS 202 R + NP ++ + + T + + + S A L + Sbjct: 134 ELKRLGFYYGDNPLANIRTFPERQRELSFLTYDQRDELLYQCEQSSNTHCAPVVRLCLAT 193 Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262 G R S++ +L +N K G + + L T + + Sbjct: 194 GSRWSEANGLKASNLFDNRVIYSDTKNGKQRVIPITSKLSSYLRSQAFPTNTGRLFDSC- 252 Query: 263 KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 + F + + + +S H +R A+ G L G + Y Sbjct: 253 ---RSAFRKALERTSIELPQGQSTHVLRHTYASHFVMKGGDILTLKNILGHSDLKVTMRY 309 Query: 323 TK 324 Sbjct: 310 AH 311 >gi|331004724|ref|ZP_08328177.1| hypothetical protein HMPREF0491_03039 [Lachnospiraceae oral taxon 107 str. F0167] gi|330408981|gb|EGG88441.1| hypothetical protein HMPREF0491_03039 [Lachnospiraceae oral taxon 107 str. F0167] Length = 346 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 38/307 (12%), Positives = 84/307 (27%), Gaps = 45/307 (14%) Query: 82 AHWGSLAVNSRISFESYFDQIIRKSGDFD---YRKITTKHIRSGV---------ESRKHT 129 + N+ S+ + + + + +IT + + R + Sbjct: 20 PEEQKCSQNTIRSYRKSLELLFDFVKEKNSVALNEITFEMMDRSTISEFLSYLETERNCS 79 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ-------QF 182 S+ L +R FK+A +++ I +++ KR + Q Sbjct: 80 ISTRNHRLHCIRAFFKYAAQEDITVIAHLEEIQKVKRAKQPETIVEHMSEDAVQAILEQP 139 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDG 240 + +G + FL +G R + + +Q + T ++ L D Sbjct: 140 DTCTEKGKRDTFLLLFLYKTGARVQELVDIRLCDIQLGKYPKVTIHGKGAKTRSIPLRDD 199 Query: 241 FMKLLAMT---PIGKETFFINNDKQKMNATQFSIWF----------------KAKATKAG 281 ++ L ++ F + + Q + + Sbjct: 200 VVQHLKKYLTLFHQEQNLFSDQYLFYVTRNQIRKRMTEDNVRKLVAKYGVQARKICKEVP 259 Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 N H R A I G + G ++ Y ++ + + Sbjct: 260 ENVHPHLFRHSWAMILYQNGVDLTLISQWLGHSNLETTLIYAHADTELKR-----KALEK 314 Query: 342 VVDSDDP 348 V D P Sbjct: 315 AVPVDSP 321 >gi|195562187|gb|ACG50169.1| putative integrase [Escherichia coli] Length = 329 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 50/312 (16%), Positives = 109/312 (34%), Gaps = 24/312 (7%) Query: 24 YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83 Y+ K G +L P +ST +++ E + RK T L ++ S Sbjct: 23 YYWKPGGTTEKLA-PADSTKAEVWVA--------YEKVIEGRKNILTFSQLWKKFLNSTD 73 Query: 84 WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS-SAIQFLTSMRV 142 + LA ++ + ++ ++ G+ + + I +H+R +++R A +SM Sbjct: 74 YADLAPRTQKDYLAHEKYLLAVFGEAEAKSIKPEHVRRYMDARGKKSRVQANHEHSSMSR 133 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202 +++W ++ +V NPC+ V++ + +E + + + A E Sbjct: 134 VYRWGYQRGFVPGNPCVGVDKYPKPQRDRYITDEEYLAIYDCATD---PVKAAMEIAYLC 190 Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL--LAMTPIGKETFFINND 260 R SD + + + I+ KTG D L Sbjct: 191 AARVSDVLKMDWNQIMDKGIFIQQGKTGVKQIKAWTDRLHSAVNLCRKSGEDGAVIKTMY 250 Query: 261 KQKMNATQFSIWFKAKATKA------GVNKSAHGVRKFSATISADAGATAHELMATYGWK 314 ++ + F+ ++ A ++ + H ++ + +G + G K Sbjct: 251 GERYSYKGFNEAWRKARNAAAEKIGRPLDCTFHDLKAKGISDYEGSG---RDKQKFSGHK 307 Query: 315 TVDQAETYTKGA 326 T Q Y + Sbjct: 308 TESQVLVYDRKV 319 >gi|172034831|ref|YP_001798608.1| integrase/recombinase [Cyanothece sp. ATCC 51142] gi|171701595|gb|ACB54574.1| probable integrase/recombinase [Cyanothece sp. ATCC 51142] Length = 290 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 44/263 (16%), Positives = 95/263 (36%), Gaps = 16/263 (6%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132 +I + L + ++ ++ +Q + + + + + V+ S Sbjct: 22 QVIQLWL-----SGLRLGTQKTYARTVNQFLGFV-EKPLVNVLLEDLTRWVDLLFIKDYS 75 Query: 133 AIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 ++ ++ LF +A + Y+ +N +V+ P ++ + ++ Sbjct: 76 QNSIALKISIIKSLFSYAWKIGYLPLNIAKAVKAPSSVNALHERILEQPEVKALIEAAKE 135 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS---IKTQKTGTIITVELPDGFMKLLA 246 + R + +GLR +++ + L+ T K G + TV + D K L Sbjct: 136 GRDRTILTLIYATGLRATEALSINWRDLRPRKQGGQATITGKGGKVRTVLISDNLWKELK 195 Query: 247 MTPIGKETF--FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302 P ++T F +++ Q K A KAG+ + S H +R A S + G Sbjct: 196 KLPRSQKTEAVFTTRFGNRLDRHQLHRIVKKTAEKAGINEHTSTHWLRHAHACHSLENGC 255 Query: 303 TAHELMATYGWKTVDQAETYTKG 325 LM + G ++ Y Sbjct: 256 DIDVLMRSLGHSSLTITSKYLHA 278 >gi|297588425|ref|ZP_06947068.1| tyrosine recombinase XerC [Finegoldia magna ATCC 53516] gi|297573798|gb|EFH92519.1| tyrosine recombinase XerC [Finegoldia magna ATCC 53516] Length = 326 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 42/311 (13%), Positives = 88/311 (28%), Gaps = 48/311 (15%) Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS--------------------G 107 P L + Y ++ + N+ + + +I+ Sbjct: 5 PMILMDFLD-YLETI--KGRSSNTVKEYAYDINLMIKYIIARKQNIKLKSFDDIVKIDSS 61 Query: 108 DFDYRKITTKHIRSGVESRKHTPSSAIQ-------FLTSMRVLFKWAVRQEYVAI-NPCL 159 D D + + +S+R +K+ + + I NP Sbjct: 62 DVDLNFFKNIDVIDLHSFMGFLDHNRSNGSSTRSRKTSSIRTFYKYLINIRKLDIINPAE 121 Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFW------SEGSQPRLAFEFLLYSGLRCSDSCRAG 213 ++ PK+ T ++ ++ L G+R S+ Sbjct: 122 LLDSPKKNIRQPVYLTLDESLNLLKVILREKDEEIKARDYCITVLFLNCGMRLSELSSIN 181 Query: 214 VQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN-----NDKQKMNATQ 268 + H++ N K TV L D + L + + + +M+ Sbjct: 182 IDHIKTNTLR-VIGKGNKERTVYLNDMCLDALDNYLKIRPEIDNDALFISKKRNRMSNRA 240 Query: 269 FSIWFKAKATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTK 324 + G + S H +R +AT+ G L G ++V + YT Sbjct: 241 IQYRIEHYLKAGGFDTSIYSVHKLRHTAATLMYQYGNVDIKVLQEILGHESVSTTQIYTH 300 Query: 325 GADR-IRLGIK 334 + +R + Sbjct: 301 VDNNSLRSAVN 311 >gi|170741019|ref|YP_001769674.1| integrase family protein [Methylobacterium sp. 4-46] gi|168195293|gb|ACA17240.1| integrase family protein [Methylobacterium sp. 4-46] Length = 338 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 40/318 (12%), Positives = 88/318 (27%), Gaps = 15/318 (4%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT-TLKW 73 R R R+ + A+ + R+ T+ Sbjct: 5 RKRGTSWQAQVRRDGFPPLS-RSFRTKAEAVAWGRDREREIEGGSLSVATREPKGLTVAE 63 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPS 131 ++ Y+ + S S G R+++ + + R Sbjct: 64 ILRRYQAAVSCKKRGARSERSRIGTLQ--AHPIGQAQVRRLSASMVARYRDDRLEIVAGD 121 Query: 132 SAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 S + LT +R + A R+ + NP ++ P+ + E Q Sbjct: 122 SVRRELTILRHCLEVARREWGIPLPSNPVGQIKLPEPSKGRQQRLEAEQAQALILALKRS 181 Query: 190 SQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247 L L +G+R + ++ + + T + +P L Sbjct: 182 RVWYLRPLVNLAIETGMRRGELLTLRWANVDLSSRIAYLETTKNGHSRTIPLSPGAL--- 238 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHE 306 + K + + + ++ +AG+ H +R + + + G + E Sbjct: 239 -SVLKGLPRTDARVFPLTGNAVRLAWERLRNRAGLPELRFHDLRHEAISRFFEIGLSIPE 297 Query: 307 LMATYGWKTVDQAETYTK 324 + G + YT Sbjct: 298 VALISGHRDTRTLMRYTH 315 >gi|254438179|ref|ZP_05051673.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 307] gi|198253625|gb|EDY77939.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 307] Length = 376 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 52/334 (15%), Positives = 99/334 (29%), Gaps = 16/334 (4%) Query: 12 TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + K + +R L T A A + R + Sbjct: 34 VRVSQGGSKSFVVVHGVNRQRETLGRYPTITLKQARGQAKKLLAQITLGVQQNR--TISY 91 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 K + ++ + N+ + D R G +IT I++ + K + S Sbjct: 92 KDARDLFLEACETKN-KKNTVDYYRKRLDAHFR-FGRKRLDEITRTDIQTRIRKIKTSSS 149 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 +R L WAVR++YV +P S++ P + T +++ Q E Sbjct: 150 EQNHAFVVIRTLMNWAVREQYVDQSPIASMKPPTKPQARDHVLTDQELIQAYKVSLEHPY 209 Query: 192 PRLAFEFLL-YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250 P LL +G+R S+ + + +I T + L+ Sbjct: 210 PFGPIISLLVLTGMRRSEVASMRWDWISHGERTITIPADVTKNKRVQTLPYADLVEAVLE 269 Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATK--AGV----NKSAHGVRKFSATISADAGATA 304 + + + + A + + H +R+ AT A G Sbjct: 270 TIPEIGPHLFPSRSETGTVFNGWGKSKERFDASLENIEPYTLHDLRRTFATTHAKIGTPI 329 Query: 305 HELMATYGWKTVD---QAETYTKGA--DRIRLGI 333 H + A Y + + D +R + Sbjct: 330 HVTEKLLNHISGTISGVAAVYNRHSYMDEMRTAV 363 >gi|325853917|ref|ZP_08171433.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] gi|325484254|gb|EGC87184.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] Length = 427 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 42/326 (12%), Positives = 101/326 (30%), Gaps = 36/326 (11%) Query: 57 KREYINSPRKKPTTLKWLIS---EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113 +E + TL L EY++ +L+ + +F+ + + D Sbjct: 95 LKERYMQQSRPMPTLAELYQSVCEYKEELQGRTLSKATVRAFKDSYKSFVHFLQVRDRAD 154 Query: 114 ITTKHIRS---------GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL--SVE 162 + + + SS L + + + A+++ YV +P +E Sbjct: 155 CMPTEVDKTLLEDYRLFMLRDLGNKESSVGNRLRHLHQVIRKALQERYVREDPFELIDIE 214 Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222 P + + + + ++ S + RL F ++GL SD + + + Sbjct: 215 TPTYERNALTADDLQKLLAYRPHRSVDNHCRLIFLLGCFTGLAFSDLKKLRMDDVYTFGD 274 Query: 223 SIKTQKTGTI----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278 + ++ + + + + + + F+ + Sbjct: 275 GRRYISLCRTKTQNRSIVPLLPIAEKILAIVSPGRREGLFFREFP-SNSNFNRTIQEICI 333 Query: 279 KAGVN----KSAHGVRKFSAT-ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 KAG+ ++H R AT I + G + G + + E Y + + ++ Sbjct: 334 KAGLPPHTQATSHTARHTFATTICLENGLPIETVSKMLGHRFISTTEIYARVT-KSKIAK 392 Query: 334 K-----------NSRRISSVVDSDDP 348 + R+ + S P Sbjct: 393 EMQPLMGSEHTRVLRKALRLCPSRTP 418 >gi|291453463|ref|ZP_06592853.1| phage integrase [Streptomyces albus J1074] gi|291356412|gb|EFE83314.1| phage integrase [Streptomyces albus J1074] Length = 383 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 56/382 (14%), Positives = 110/382 (28%), Gaps = 40/382 (10%) Query: 2 TPSLRLPPFV-TKERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKR 58 P R P T + + G+ Y + G R R ++ K Sbjct: 4 APRKRNPNGAGTITKRKDGRYQCAVYVLQPDGTRARKFAYGKT--WAECDVKRRELLAKV 61 Query: 59 EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTK 117 + K L + + + +++ +E++ ++ G + Sbjct: 62 DQGVPVPTKSAKLSEWLPYWLDNVIKPRRKLSTYDKYEAHARLYLVPLLGAKRLESLGVA 121 Query: 118 HIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 +R + + T ++A + +R A R+E + N VE P+ ++PWT Sbjct: 122 DVRRFIVRLEKETTAATAKESHRVLRSALSSACREELITRNVAKLVEPPRTVNRELKPWT 181 Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--- 232 ++ F + + AF + GLR + L + + ++ Sbjct: 182 LDETLDFLAASRKDP-LYAAFVLAIAMGLRRGEIIGLRWSDLDLDNRVLYVRQQTQRRRG 240 Query: 233 -------------------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT 267 + ++ A F +++ Sbjct: 241 VLYDDDPKSRRRRAVPLPALCIAPLRWHRMRQAAARVKAGEWQESGYVFTTRTGRQVEPR 300 Query: 268 QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKG 325 F A AG+ H R +AT+ AG +M G + YT Sbjct: 301 NVYRSFTRVAESAGLRVIRLHDARHGTATLLTAAGVAPRVVMEILGHSQISITMDVYTHV 360 Query: 326 A-DRIRLGIKNSRRISSVVDSD 346 D R I + R+ S Sbjct: 361 VQDTQREAISHMDRLLKRRPSR 382 >gi|260589353|ref|ZP_05855266.1| site-specific recombinase, phage integrase family [Blautia hansenii DSM 20583] gi|260540434|gb|EEX21003.1| site-specific recombinase, phage integrase family [Blautia hansenii DSM 20583] Length = 365 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 40/358 (11%), Positives = 111/358 (31%), Gaps = 32/358 (8%) Query: 5 LRLPPFVTKERTRHGKII--YYFRKGHGRRIRLPYPHESTFIPAY----MSA-----LTG 53 ++LP GK + RK G RI P + + Y +A L Sbjct: 1 MKLPNGYGSVVKLSGKRRKPWMVRKTTGYRI---DPVKEKKVNEYIIIGYAATKTEGLQM 57 Query: 54 STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113 + T + E+ K + +++ ++ +++ + + ++ Sbjct: 58 LADYNRNPYDTKAAKMTFDEVYEEWSK-KKFPTVSESNIKGYKASYKT-CGILYNRVFKD 115 Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 + ++ +++ + + L+++A++ + + VE + K Sbjct: 116 LKLADLQQVIDTCGKNYPTLKKIKILFNQLYEFALKNDICNKDYSTFVEISQYKDRNPNK 175 Query: 174 WTKEDMQQFKS---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230 T+ + + + + + LLY+G R S+ +++ + Sbjct: 176 HTRTKFTKEEVAKVWTMKEDKYYQIILMLLYNGTRISEFLDLKKENVHLEEQYFDVIDSK 235 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKM-------NATQFSIWFKAKATKAGVN 283 T + KLL + + ++ + G++ Sbjct: 236 TENGIRKVPIADKLLPYYKDWYNSCPDCEYLLHTEDGKRFLYRNYYDSYWTPLVEQIGID 295 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA---ETYTKGADRIRLGIKNSRR 338 ++ H R ++ ++AG + G + + YT + + + + Sbjct: 296 RTPHCTRHTCISMLSEAGVQDTTIKKIVGH-SGAMTLTEKVYTHLDMQ--VLVDAINK 350 >gi|257870365|ref|ZP_05650018.1| integrase/recombinase [Enterococcus gallinarum EG2] gi|257804529|gb|EEV33351.1| integrase/recombinase [Enterococcus gallinarum EG2] Length = 320 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 48/268 (17%), Positives = 93/268 (34%), Gaps = 13/268 (4%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---- 128 ++ S L+ + + + +R + +TT IR + +R+ Sbjct: 45 AAYKQFFVSKKIQGLSSGTLNLYMQTINLFMRSV-RKSFSDVTTNDIRLFIANREMIDRV 103 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + + + + FKW +EY+A +P VE K + +++ ++++ +S Sbjct: 104 SKGTLARERGCIVRFFKWLCNEEYIAKDPGARVENIKVPKRRKQEFSELEVEKLRSAT-A 162 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGV-QHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247 S+ L E LL +G R S+ + Q N K T+ L L Sbjct: 163 NSKEALIIELLLSTGCRVSELVSLNFRDYDQENDSITVIGKGNKQRTLYLNAKAKMALNH 222 Query: 248 TPIGKETFFINNDKQK-----MNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAG 301 + M + K +A V N H R+ +AT++ G Sbjct: 223 YLKDVPHITGPLFFGQTVGKEMTSAGVQKLVKRLGNRAEVANVHPHRFRRTAATLARRHG 282 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRI 329 +M G +++D Y+ D Sbjct: 283 MPIELVMNFLGHESIDTTLKYSMIGDEE 310 >gi|299147785|ref|ZP_07040848.1| integrase protein [Bacteroides sp. 3_1_23] gi|298513968|gb|EFI37854.1| integrase protein [Bacteroides sp. 3_1_23] Length = 390 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 42/270 (15%), Positives = 84/270 (31%), Gaps = 14/270 (5%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 + ++ +++ SL ++R + S + + + + +T + + S + Sbjct: 106 RSFLTFFKEEIANSSLKESTRQNHLSTLELLQEFKKEVLFTDLTFEFVSSFDNYLQSKGY 165 Query: 132 SAIQFLTSMRVLFKWAV----RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 M+ L ++ ++ + K E++ +F++ Sbjct: 166 HLNTIAKHMKHLKRYINVAINKEYMDIQKYAFRKYKIKSIEGSHTHLAPEELHKFENLQL 225 Query: 188 EGSQPRL-----AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242 G RL AF F Y+GLR SD ++ +E+ Sbjct: 226 TGRYTRLQKTKDAFLFCCYAGLRYSDFTNLTSANIVEFHQETWIIYKSVKTGMEVRLPLY 285 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAHGVRKFSATIS 297 L I + ++ S K AG+ S H R +AT+ Sbjct: 286 LLFEGKGIQILQRYKDDLNSFFKLKDNSNINKELNILAGLAKIDKRVSFHTARHTNATLL 345 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGAD 327 GA + G K+V + Y D Sbjct: 346 LYNGANITTVQKLLGHKSVKTTQVYANIMD 375 >gi|327404978|ref|YP_004345816.1| integrase family protein [Fluviicola taffensis DSM 16823] gi|327320486|gb|AEA44978.1| integrase family protein [Fluviicola taffensis DSM 16823] Length = 419 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 30/269 (11%), Positives = 87/269 (32%), Gaps = 22/269 (8%) Query: 82 AHWGSLAVNSRISFESYFDQIIRK------SGDFDYRKITTKHIRSGVESR----KHTPS 131 ++ + + ++ ++++ D ++ I + + Sbjct: 128 VKISKISPKTLMRYQITKNKVVAYMERKFKLSDMPLHELRLAFITEFEHHLLTVDRIQSN 187 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 +A +++ +++ + AV +++ NP + + +++++ + + Sbjct: 188 TAHKYIKNLKKIMNMAVGLDWIPSNPFNLFKC-SYVSTDREILNQDELEVLRLKPISVQR 246 Query: 192 P---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP-----DGFMK 243 R F F Y+G SD + + + T T ++ Sbjct: 247 LVEVRDVFVFCCYTGFAYSDVYQFQHDAVIVGLDKEYWLSTNRQKTGTRESVPLLPIPLQ 306 Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-ADA 300 ++ + N + +++ + K A G+ K + H R AT Sbjct: 307 IIEKYKNDEYCIKSNKLLPVNSNQRYNSYLKELADICGIKKHLTTHIARHTFATTVTLAN 366 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329 G + + G K++ + Y K ++ Sbjct: 367 GVPIETVSSMLGHKSIRTTQVYAKVVEKK 395 >gi|254513132|ref|ZP_05125198.1| phage integrase family protein [Rhodobacteraceae bacterium KLH11] gi|221533131|gb|EEE36126.1| phage integrase family protein [Rhodobacteraceae bacterium KLH11] Length = 236 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 38/211 (18%), Positives = 69/211 (32%), Gaps = 13/211 (6%) Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-SF 185 TPS +T++R F +E + + + + + E++ + Sbjct: 5 GVTPSVYTARITALRFFFSMTCGREEMKRYM----QFRTQPRKLPAVLSAEEVSELLAVA 60 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMK 243 G + R A +GLR S+ C + ++ + K V L + Sbjct: 61 PGPGLKYRAALSISYGAGLRASEVCNLTAGDIDSDRVLIHVVQGKGRKDRKVMLSPDLLD 120 Query: 244 LLAMTPIGKETFFI----NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297 LL ++ Q + F + AG+NK + H +R AT Sbjct: 121 LLRDYWCEARPEGWLFPGKPKINPISPRQLNRAFTSAKRMAGINKPATLHTLRHSFATHL 180 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADR 328 +AG + G + YTK A + Sbjct: 181 LEAGTDVRVIQVLLGHAKLTTTAQYTKVATK 211 >gi|152995812|ref|YP_001340647.1| phage integrase family protein [Marinomonas sp. MWYL1] gi|150836736|gb|ABR70712.1| phage integrase family protein [Marinomonas sp. MWYL1] Length = 283 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 38/249 (15%), Positives = 84/249 (33%), Gaps = 18/249 (7%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMR 141 +V+++ ++ ++ R ++ I+ + R + SS Q L ++ Sbjct: 16 GFSVSTQRAYLYQLTEVARYF-HMPPDRLNQTDIQQYLLYLIRERGWSWSSCRQALHALN 74 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201 L++ + +++ + ++ I D Q + + +A Sbjct: 75 FLYRKVANKTMPSVSLPHPNK-----SQKIPDLLYPDEVQAMIRCCQHPKVYVAMVLAYT 129 Query: 202 SGLRCS--DSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259 +G+R S + R L ++ ++ K V P ++L E + Sbjct: 130 TGMRISEVNELRVNDLDLTHHCIKVRQGKGQQDRYVLFPQSLQQVLGRYWQRYEPCDVVV 189 Query: 260 D----KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGW 313 + +++ + K A +AG+ K H +R A AG L A G Sbjct: 190 YGLDKHRPLHSKYLRLETKEAAKRAGIQKCIRFHSLRHAFACHQLLAGMPLPRLQALLGH 249 Query: 314 KTVDQAETY 322 K + Y Sbjct: 250 KQIQTTFRY 258 >gi|253995768|ref|YP_003047832.1| integron integrase [Methylotenera mobilis JLW8] gi|253982447|gb|ACT47305.1| integron integrase [Methylotenera mobilis JLW8] Length = 321 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 32/310 (10%), Positives = 80/310 (25%), Gaps = 51/310 (16%) Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 K TL ++ + ++ + + + + + R++ + + + Sbjct: 3 KQPTLLEVVQQ---KIRVKHYSIRTETQYLQWVKRFVLFHDKKHPREMGGAEVEAFLSHL 59 Query: 127 KH----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR------KTEGIRPWTK 176 + S+ Q L+++ L++ + ++ + ++P+R K E + Sbjct: 60 ATHGNVSSSTQNQALSALLFLYREVLGLSLPWMDDVVRAKKPQRLPVVLSKQEVAKILDH 119 Query: 177 EDMQQFKSFWSE-GSQPRLAFEFLL-----------------------YSGLRCSDSCRA 212 G+ R+ L + L S Sbjct: 120 MQATHGLIARLLYGTGIRIMECCRLRVQDIDFDRGELLIRNGKGAKDRVTMLPKSLIEPL 179 Query: 213 GVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ---- 268 + + G K + + + ++ Sbjct: 180 KAHLVWRKALFHADEAKGKAEVYLPDALERKYVNAATSWAWQYVFCSGSYSVDPRSGRER 239 Query: 269 --------FSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 K AG++K + H R AT ++G + G V Sbjct: 240 RHHLDEKLVQRAVKKAVGLAGIDKLATPHTFRHSFATHLLESGYDIRTVQELLGHSDVST 299 Query: 319 AETYTKGADR 328 YT ++ Sbjct: 300 TMIYTHVLNK 309 >gi|237653457|ref|YP_002889771.1| integrase [Thauera sp. MZ1T] gi|237624704|gb|ACR01394.1| integrase family protein [Thauera sp. MZ1T] Length = 330 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 35/318 (11%), Positives = 92/318 (28%), Gaps = 14/318 (4%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 R R + + + ++ K + N + TTL + Sbjct: 5 RQRGNRWQCRVTRHGFPPET-KSFATKADAETWARSIEVEMDKGVHQNRASVERTTLADI 63 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSS 132 + Y + + K ++ + + R + + Sbjct: 64 LLRYAEEVTPCKKGAKDEAIRLNALR--ANKLAKHSLANLSAAAVAKFRDERLKTVSAGT 121 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPC-LSVERPKRKTEGIRPWTKEDMQQFKSFW----S 187 ++ L + + A R+ + ++ +P++ R + ++ + + Sbjct: 122 VLRDLALISSVLNHARREWGFPVENAVQAIRKPRQPQGRERVLSHDEEARLLAASAPIGR 181 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247 + L + +R + +H+ + + T +P + Sbjct: 182 RSPWLQPIIILALETAMRRGELLALRWEHVSLDKRTALLPDTKNGTRRLVPLSPRAI--- 238 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHE 306 + I+ ++ + FK +AG++ H +R + T A+ E Sbjct: 239 DTLKHMPRAIDGRVFPISEPALHLRFKLACDRAGIDGLHFHDLRHTATTRLAEKLTNLAE 298 Query: 307 LMATYGWKTVDQAETYTK 324 L A G K++ + Y Sbjct: 299 LSAVTGHKSLQMLKRYYH 316 >gi|297192331|ref|ZP_06909729.1| traSA:integrase fusion protein [Streptomyces pristinaespiralis ATCC 25486] gi|197719686|gb|EDY63594.1| traSA:integrase fusion protein [Streptomyces pristinaespiralis ATCC 25486] Length = 372 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 48/358 (13%), Positives = 101/358 (28%), Gaps = 43/358 (12%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 + +GK +R G+ + ++ PR K Sbjct: 6 KRPNGKWRARYRDLDGKEH--ARHFDRKIDAQRWIDEVTASLVTGQYVDPRSAKKPFKEY 63 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT---- 129 E+R ++ + + + I ++S V S T Sbjct: 64 AEEWRAIQPHR---PSTAKAVAQHLRCYVYPAWEKRSLGAIKPGDVQSWVTSLTTTHGLA 120 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 S++ ++ +F+ AVR + NPC + P + I P E ++ Sbjct: 121 ASTSRTVFNTVNAVFRAAVRDRMIPHNPCAEAKLPSVPRKKIVPLAVEQVRTL--SDEIP 178 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-----------------NNIFSIKTQKTGTI 232 ++ + +GLR + ++H+ + ++ + + Sbjct: 179 ARYKGLVLLGAATGLRPGELFGLQLRHVDLLHATVSVEQQIQQTAKHGVYVCPPKTARSH 238 Query: 233 ITVELPDGFMKLLAMTPIGK-------ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285 TV LP + + F + ++ KAG+ K Sbjct: 239 RTVPLPRMAVDAMKAHLRDFPADGPEGWIFTAPQGGPVVYTHFMDGSWRPACAKAGIPKG 298 Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK----GADRIRLGIKNS 336 H +R A++ G + + G YT +R R + + Sbjct: 299 TGPHALRHHYASLLIRHGESVKTVSERLGHTNAAMTLNIYTHLWPDSEERTRAAVDKA 356 >gi|328541944|ref|YP_004302053.1| Integrase family protein [Polymorphum gilvum SL003B-26A1] gi|326411694|gb|ADZ68757.1| Integrase family protein [Polymorphum gilvum SL003B-26A1] Length = 428 Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats. Identities = 60/366 (16%), Positives = 103/366 (28%), Gaps = 42/366 (11%) Query: 14 ERTRHGKIIY--YFRK--GHGRRIRLPYPHESTFIPAYMSALT-----GSTPKREYINSP 64 T+ G + +R G RRI + T A A + I+ Sbjct: 33 RVTKAGAKTFILQYRNAAGKSRRINIGRYGVMTLDNARAEAKIKLGAIAAGEDPADIDDD 92 Query: 65 RKKPTTLKWLISEYRKSAH--------WGSLAVNSRI-SFESYFDQIIRKSGDFDYRKIT 115 P T+ L Y A + +S I G K+ Sbjct: 93 PDGPMTVAALCDWYLSEAETGRLLGRRRRPIKASSLAMDKSRIEAHIKPLLGKRVVSKLK 152 Query: 116 TKHIRSGVESRKHTPSS-----------------AIQFLTSMRVLFKWAVRQEYVAINPC 158 I +S A + ++++ +F+ AVR + NP Sbjct: 153 LGDIEGAQADIAAGKTSKPRKGSRGGVTTGGEGVAGRTMSTLHSIFEHAVRLGKIESNPA 212 Query: 159 LSVERPKRKTEGIRPWTKEDM-----QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213 V + R E E A FLL +G R + Sbjct: 213 KGVRKIASTPRDRRLSRTEIEKLGKAMLAAEAEGEHPTGLAAIRFLLLTGFRRMEGLGLE 272 Query: 214 VQHLQNNIFSIKTQKTGTIITVELPD-GFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272 L +I+ T + + + LL P + FF D + Sbjct: 273 RAWLDEEEGAIRFPDTKSGAQTRVIGGSAVDLLLAQPRTRSPFFFPADWGDGHFIGVVRV 332 Query: 273 FKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 F + G+ + + H +R A+++AD G + + A G + Y + ++L Sbjct: 333 FDRVCARVGLADVTLHALRHTFASVAADLGFSELTIAALLGHAARGVTQRYIHIDEALKL 392 Query: 332 GIKNSR 337 Sbjct: 393 AADKVA 398 >gi|119960917|ref|YP_947150.1| Tn554-related transposase A [Arthrobacter aurescens TC1] gi|119947776|gb|ABM06687.1| Tn554-related transposase A [Arthrobacter aurescens TC1] Length = 368 Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats. Identities = 31/335 (9%), Positives = 82/335 (24%), Gaps = 68/335 (20%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTPS- 131 + Y + N+ ++ D+R++T + + VE + P+ Sbjct: 29 VEAYLAFLSAIERSPNTVKAYAHDLKDFFAFLAQRGLDWRRVTLEDVGGFVEWLRMPPAG 88 Query: 132 ------------------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 + + L+++ ++ R + + P ++ Sbjct: 89 RAGQVAVLPVTAPQVGAGTINRKLSAVSSFYQHQARHGVELGDLLVKWAAPGARSSWKPF 148 Query: 174 WTKEDMQQFKSFW-------------------------SEGSQPRLAFEFLLYSGLRCSD 208 + + + R F L +G+R + Sbjct: 149 LHHISKGRPQRRRAIALEAPVKLPRVLTVGEVQSILDACTRLRDRFLFAVLFDTGMRIGE 208 Query: 209 SCRAGVQHLQNNIFSIKT--------------QKTGTIITVELPDGFMKLLAMTP----- 249 L ++ + ++ EL + L + Sbjct: 209 VLGLRHDDLSAAEREVRVVARLNENGARAKTGRPRTVPVSAELLRLYADYLHLEYGDLDS 268 Query: 250 -IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELM 308 + ++ + GV+ H R +AT + Sbjct: 269 DYVFVNLWGGRVGHALSYRSVYDLVGRLRRRTGVDFDPHWFRHSAATRMLRDSVPLEVVS 328 Query: 309 ATYGWKTVDQAE-TYTK-GADRIRLGIKNSRRISS 341 + G +V Y A+ R+ ++ + + Sbjct: 329 SLLGHASVTTTMDVYGHLTAEDARMVLEKAGWFAG 363 >gi|78355667|ref|YP_387116.1| hypothetical protein Dde_0620 [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78218072|gb|ABB37421.1| hypothetical protein Dde_0620 [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 281 Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats. Identities = 32/280 (11%), Positives = 80/280 (28%), Gaps = 13/280 (4%) Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE---- 124 T+ Y A + + F + ITT + + Sbjct: 1 MTVGKWAEYYVDHAE-QTWPHKTFDEKRRAFRRFFDTKICKPGDPITTVSVEKASKVLAV 59 Query: 125 -SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 H+ ++ + ++ + W ++ + ++ + +R + + Sbjct: 60 LKEHHSGNNLNRMRKNLIAAWNWGIKNHKIPAQNPFALTDRSSEIIKLRYVPPMEDLKAV 119 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-----IITVELP 238 + G RL Y+ R + R + I + + Sbjct: 120 VDVAAGE-QRLMLLTAFYTAARKCELFRLRWTDVDFASNKIGLWTKKRKGGNLELDLMPM 178 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATIS 297 ++ L D+ + + W K +AGV HG+R +A+ Sbjct: 179 AKPLRSLLEEHHRGAESEHVFDQSPHSQNSNNRWLKELCKEAGVKAFGFHGIRHLAASYG 238 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 ++GA+ ++ K+ + Y + + ++ Sbjct: 239 IESGASIVDVQELLRHKSANVTARYIRRLKKGNRAVEALE 278 >gi|260663670|ref|ZP_05864559.1| integrase [Lactobacillus fermentum 28-3-CHN] gi|260551896|gb|EEX25011.1| integrase [Lactobacillus fermentum 28-3-CHN] Length = 362 Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats. Identities = 39/361 (10%), Positives = 108/361 (29%), Gaps = 34/361 (9%) Query: 15 RTRHGKIIY---YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + K Y +R +G+R + A +A + + + Sbjct: 4 VKKRPKGYYGVAEYRDSNGKRHQKGAGTFKLKREALAAA--DKLERELNGLNTELANLSF 61 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 + + S+ +++ + + I G +I + + H Sbjct: 62 AEYYQRWYRLYKEHSVEPITQVRYRTVGKLIADFFGQKKIAEIHRSDYQEFINWYGHDKV 121 Query: 132 --SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK------ 183 + I+ +++R+ A+ + + + +V+ K + + + + + Sbjct: 122 KDTVIKVNSAVRLCVNSAIDDDLIIKDFTHNVQITHDKQQRPKIEYLNEKEIRQLESATA 181 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------- 232 + + R + +G+R S+ + + +I K+ Sbjct: 182 NKLDHNNTSRYMILTAILTGMRKSEIQALTWKDIDFLHATISITKSWDEQKKTFKPTKTE 241 Query: 233 ---ITVELPDGFMKLLAM-TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---S 285 T+++ + L G F+N +T + T G++K Sbjct: 242 SSIRTIKVNRQLLDWLEDLKVNGSTLIFMNKLGTIPTSTALIKVLRTIMTDCGISKQGFH 301 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGIKNS--RRISSV 342 H +R G + + G + +TY+ D + ++++ + Sbjct: 302 FHSLRHVHVAYLLGQGVDVYAISKRLGHSDITITLKTYSYLIDEYKAKNDELITQKLAQL 361 Query: 343 V 343 + Sbjct: 362 L 362 >gi|46580602|ref|YP_011410.1| phage integrase family site specific recombinase [Desulfovibrio vulgaris str. Hildenborough] gi|46450021|gb|AAS96670.1| site-specific recombinase, phage integrase family [Desulfovibrio vulgaris str. Hildenborough] Length = 309 Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats. Identities = 40/305 (13%), Positives = 82/305 (26%), Gaps = 17/305 (5%) Query: 48 MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107 A + T+ + Y + + + S Y I G Sbjct: 4 QLASALRADAVRLSKQVVRANMTVGDAWTLYCRDWLASKSSYKTDRSL--YLKHIEPVIG 61 Query: 108 DFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPK 165 ++ T I + +P + + + ++ L++ Y P V + Sbjct: 62 SRRMDEVKTVDINELLRRMGDLSPQTRVHAVGLVKRLYRRMAGWGVYHGPTPTDGVVVKR 121 Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRL-AFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 +R + ++ + S L++GLR + VQH+ + I Sbjct: 122 VDNARMRFLSPKEARWLLEELDCRSPQFADVCRVSLFAGLRLREIFSLKVQHVNIDARVI 181 Query: 225 -KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK-QKMNATQFSIWFKAKATKAGV 282 + + ++LA +G+ K + F + Sbjct: 182 AVMDAKSGSRMASMTEDLARVLARYVVGRRPEEFVFTKASGEGMRTINQTFVRVVRDLEL 241 Query: 283 ---------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLG 332 H +R A+ G + + G V+ Y K A D R Sbjct: 242 NDGVDDARHKVVFHTLRHTFASWLVQRGVPLYTVADLMGHSVVEMTRRYAKLAPDTRREA 301 Query: 333 IKNSR 337 + Sbjct: 302 VNQLD 306 >gi|261248380|emb|CBG26217.1| bacteriophage integrase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] Length = 340 Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats. Identities = 50/313 (15%), Positives = 85/313 (27%), Gaps = 30/313 (9%) Query: 29 HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA 88 G+RIR F + + ++ +LK LI + SAH +L Sbjct: 21 KGKRIR------RKFATKGEALAFEQHKIQHPWQEEKEDRRSLKELIDSWY-SAHGITLK 73 Query: 89 VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR------------KHTPSSAIQF 136 + G+ R + E R + +P + Sbjct: 74 DG--EKRKLAMHHAFDCMGEPLARDFDAQMFSRYREKRLKGDYARSNRVKEVSPRTLNLE 131 Query: 137 LTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195 L R +F R E+ NP ++ + + + TKE + P L Sbjct: 132 LAYFRAVFNELNRLGEWKGENPLKNMRPFRTEEMEMAWLTKEQIAALLDECKRHEHPDLV 191 Query: 196 FE--FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253 L +G R S++ L + K TV + + L Sbjct: 192 SVVKICLATGARWSEAEGLKKSQLSKYKITYNYTKGKKNRTVPISKELYEELPAKNKEHG 251 Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGW 313 + F N F + + + H +R A+ G L G Sbjct: 252 SLFQNC------YGAFRSALQRTNIELPAGQLTHVLRHTFASHFMMNGGNILVLQRVLGH 305 Query: 314 KTVDQAETYTKGA 326 + Y A Sbjct: 306 TDIKMTMRYAHFA 318 >gi|237742399|ref|ZP_04572880.1| DNA integration/recombination/invertion protein [Fusobacterium sp. 4_1_13] gi|229430047|gb|EEO40259.1| DNA integration/recombination/invertion protein [Fusobacterium sp. 4_1_13] Length = 416 Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats. Identities = 59/390 (15%), Positives = 114/390 (29%), Gaps = 72/390 (18%) Query: 10 FVTKERTRHGKIIY----YFRKGHGRRIRLPYPHESTFIPAYMS-----------ALTGS 54 + T + G+ + Y +K R+ L +S L Sbjct: 13 YTTSYTRKKGRFYHVVFEYVKKKGTRKKSLSRTTKSEDEEVANRMLDDFVIECMKILNID 72 Query: 55 TPKREYINSPR---------KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIR 104 + + + I Y K+ ++ ++ +ES +I Sbjct: 73 KKYKPKNRNKIIFNKDLNLYNTEISFCDFICGYIKTRR-KTIEDDTYSGYESIARCSLIP 131 Query: 105 KS--GDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158 + ++I I R +P++ + + + ++FK+A+R + + NP Sbjct: 132 YFYRENKKLKEIEDFDIEKYYYHELNYRNISPNTVLHYHYLLSLVFKYALRHKIITRNPL 191 Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSF-WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217 SVE+PK+K + E++ E Y GLR S+ + Sbjct: 192 DSVEKPKKKKYVAEVYNAEEINILLDLLKREEENLYFGVLMAAYFGLRRSEVIGLKWSSI 251 Query: 218 QNNIFSIKTQKTGTI---------------------ITVELPDGFMKLL----------- 245 +I T + LP +LL Sbjct: 252 NFEENTITIMSTVKETNIDGKHIFVCQDKTKSPAGLRSFSLPIEIKELLLEIKEKQEENK 311 Query: 246 -----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299 KE ++++ +++ + F K + H +R ATI D Sbjct: 312 KYLGKGYYMEDKEYIYVDDGGKRLRPNYLTTRFGKFLKKFNLKHIRFHDLRHSCATILYD 371 Query: 300 AGATAHELMATYGWKTVDQAE-TYTKGADR 328 A E+ G +V Y +R Sbjct: 372 NNAGIKEIQTYLGHSSVKTTMEIYVHLMNR 401 >gi|237666570|ref|ZP_04526555.1| site-specific recombinase, phage integrase family [Clostridium butyricum E4 str. BoNT E BL5262] gi|237657769|gb|EEP55324.1| site-specific recombinase, phage integrase family [Clostridium butyricum E4 str. BoNT E BL5262] Length = 361 Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats. Identities = 39/345 (11%), Positives = 102/345 (29%), Gaps = 46/345 (13%) Query: 15 RTRHGKIIYYFRKG--HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 R R YYF G G+ + T A + +++ Sbjct: 6 RKRGNFWSYYFNIGKIDGKYKKKEKGGFKTKKEAENALRDAIKEYELCGEVFEPSTISIE 65 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH--- 128 + + + + +N++ + + II D+ +++ ++ + +K Sbjct: 66 DYFNYWFDNYVLVNCKLNTQTYYRRILDNHIIPYFKDYKLKQLKADALQKFLNYKKRNGL 125 Query: 129 TPSSAIQFLTSMRVLFKW------AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + SS F + K+ +++ + + +++ + ++ T E+ + Sbjct: 126 SKSSITNFYGVLSGALKYAVYPCNYIKENPMYYVNIPKYDEAQKEAKDLKIITIEEFTRI 185 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------- 232 + + G + + +G+R + ++ I + T Sbjct: 186 INRFPMGENLYIPLQIGFNTGMRGGEIVALTWDNVDLENGIIHVKHTLIETGTKGMKKFI 245 Query: 233 -------------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273 I + +L+ G+ N K N + Sbjct: 246 LGTPKTKSSYRSIHIGDTLINILKHHKEWQLMNKEKYGEWYEHSNFVCTKENGKPLTTSI 305 Query: 274 KAKATK-----AGVNKSAHGVRKFSATISADAGATAHELMATYGW 313 ++ +N + H +R AT+ + GA ++ G Sbjct: 306 YKYLSRVVNNELCINFTMHSLRHTHATLLLENGANMKDMQKRLGH 350 >gi|171464293|ref|YP_001798406.1| integrase family protein [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193831|gb|ACB44792.1| integrase family protein [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 333 Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats. Identities = 42/309 (13%), Positives = 88/309 (28%), Gaps = 51/309 (16%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESRK--- 127 L+ EY H L+ ++ ++ + + + K++ H+R Sbjct: 11 LMQEYLHELHVLRQLSPHTLKAYGMDLSDLQNFALEDTVELLKVSNGHVRRWAGRLHSKG 70 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPC------------LSVERPKRKTEGIRPWT 175 +P S + L++ R + W ++ V+ PKR + + Sbjct: 71 KSPRSIARTLSAWRGWYDWLSEKDARRDVHAGKVTSALVANPVDDVKAPKRPKSLPKALS 130 Query: 176 KED---------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226 E + + E + L SGLR S+ V ++ Sbjct: 131 VEQALALVNQAVKEAEEKKDLESIRDAAIIGLLYSSGLRLSELLGIDVIQSKDRQHESAG 190 Query: 227 QKTG------------TIITVELPDGFMKLLAMTPIGKETFFINNDKQ---------KMN 265 +V + MK LA ++ + +++ Sbjct: 191 WLDWDAAEVTVLGKGGKRRSVPVGVPAMKSLAAWRELRDDGSYAEESIALFLSATGKRLS 250 Query: 266 ATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + A +AG+ H +R A+ + + G ++ + YT Sbjct: 251 PRTVQARLRTLAMRAGLPTHVHPHMMRHSFASHVLQSSQDLRAVQEMLGHASIASTQIYT 310 Query: 324 KGADRIRLG 332 D L Sbjct: 311 -SLDSQHLA 318 >gi|119477783|ref|ZP_01617906.1| Phage integrase [marine gamma proteobacterium HTCC2143] gi|119448944|gb|EAW30185.1| Phage integrase [marine gamma proteobacterium HTCC2143] Length = 346 Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats. Identities = 47/339 (13%), Positives = 96/339 (28%), Gaps = 18/339 (5%) Query: 17 RHGKIIYYFRK--GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 R G ++ GRR+ A + + T + Sbjct: 10 REGTPYWWVDLVLPDGRRV-CQSTRLKCLNAANEFVIDLKADAYKRSREGIVHDKTWRQA 68 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPS 131 + Y S + ++ GD R+++ + + R+ T + Sbjct: 69 VVRYLAENATKK----SLQADRDNLKKLDAFVGDLLLRQVSMDSLWPFIHQRRDDGVTDA 124 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 + + L +R +F A + + K R + + Sbjct: 125 TINRALEVVRRIFHLARDEWCWLERF---PKIRMLKEPKRRIRFLRRPEVNRLLEELPDH 181 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAMTP 249 R +F + +G R + + + + + T +P +LA+ Sbjct: 182 MRPVVQFAVATGCRMGEILKLEWNRVDFDRRVAWLDHGTTKNGDGRGIPLNNDAVLALRS 241 Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELM 308 + + + +K +A + H +R A+ +G + ELM Sbjct: 242 LHGQHQRWCFTFRGKPIKAIGSCWKRALERAQIENFRFHDLRHTWASWHVMSGTSLQELM 301 Query: 309 ATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347 GWK+ + Y A + RI V D D Sbjct: 302 ELGGWKSYEMVLRYAHLAPEH--LSSAAARIEQVWDVVD 338 >gi|116751410|ref|YP_848097.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB] gi|116700474|gb|ABK19662.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB] Length = 415 Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats. Identities = 50/377 (13%), Positives = 106/377 (28%), Gaps = 54/377 (14%) Query: 4 SLRLPPFVTKERTRHG-----KIIYYFRKGHGR----RIRLPYPHESTFIPA---YMSAL 51 P +E R G K+ Y K G+ ++ + + T A + Sbjct: 5 KTNYPGVFYREADRIGGKGAEKVYYILFKQDGKVLEEKVGRQFVDDMTPARAAGIRAERI 64 Query: 52 TGSTPKREYINSPR-KKPTTLKWL-ISEYRKSAHWGSLAVNS------RISFESYFDQII 103 G P R+ I R + +K + + + W + + I Sbjct: 65 EGKRPSRKEIKEEREAQEHAVKEAEANRWTITRLWEEYKRGTPGLKGIVTDENRFEKHIK 124 Query: 104 RKSGDFDYRKITTKHIRSGVESR--------------------------KHTPSSAIQFL 137 GD ++ + P + L Sbjct: 125 PIFGDKQPHELGALDVDRLRIGLLKKARKPAVQKTPGDSKPGTVKKSVDPLKPGTVKNVL 184 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA-- 195 +R + + V++ + ++E PK T +++ + + A Sbjct: 185 ELLRRIINFGVKKN-LCTGAGFAIELPKVNNLRTEDLTPDELAKLMDAIEKDENLIAANL 243 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP-DGFMKLLAMTPIGKET 254 + L++G+R + R L I + + +P + + + + + Sbjct: 244 MKMALFTGMRRGELFRLKWSDLDFERGFIHIRGPKGGVDQTIPVNEEARKILQSHRRTNS 303 Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNKSA---HGVRKFSATISADAG-ATAHELMAT 310 F+ + AG+ K HG+R A++ A +G + L Sbjct: 304 GFVFPGRGGHQRIDIHKSVNKIKEAAGLPKGFRALHGLRHAYASMLASSGKVDLYTLQRL 363 Query: 311 YGWKTVDQAETYTKGAD 327 K+ + Y D Sbjct: 364 LTHKSPTMTQRYAHLRD 380 >gi|71276068|ref|ZP_00652349.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Dixon] gi|71902095|ref|ZP_00684131.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Ann-1] gi|71163151|gb|EAO12872.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Dixon] gi|71728140|gb|EAO30335.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Ann-1] Length = 339 Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats. Identities = 55/329 (16%), Positives = 103/329 (31%), Gaps = 23/329 (6%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 P + G + YY+ G R P + + L + Sbjct: 12 PRFRVRPQKSGVVYYYYDHGGKPRKETPLGRDYGLAIQRWAELEHAQITPAI-------A 64 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR 126 T + + YR A N++ Y + +++ D + I +IR ++ R Sbjct: 65 VTFRHVAERYRAEVIPTK-AYNTQRMHHIYLNYLLKFFDDPPAPFESIKPVNIRQYLDWR 123 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + SA + + L+ W + + +R E R +D + Sbjct: 124 -TSKVSANREVALFSHLWNW--ARSKGITDLPNPCGGIRRNKERGRDVYIDDTTYRAVYQ 180 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246 + R A + +G R SD +H+ N I KTG + + + L+ Sbjct: 181 AADQTLRDAMDLAYLTGQRVSDVVNMDERHIVNGALEICQAKTGVKLAIAITGELAVLIK 240 Query: 247 MTPIGKETFFINNDKQKMNATQFS-------IWFKAKATKAGVNK---SAHGVRKFSATI 296 K + + + ++ F+ AG+ K +R +AT Sbjct: 241 RILARKRGMKLRSTRLIVDEKGLGLNWKKLAYRFRKVRAAAGIAKEVFQFRDLRAKAATD 300 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKG 325 AD + A G +V E Y + Sbjct: 301 KADLAGDMRQAQAQLGHASVTMTEHYVRK 329 >gi|329963222|ref|ZP_08300959.1| site-specific recombinase, phage integrase family [Bacteroides fluxus YIT 12057] gi|328528918|gb|EGF55858.1| site-specific recombinase, phage integrase family [Bacteroides fluxus YIT 12057] Length = 308 Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats. Identities = 33/304 (10%), Positives = 90/304 (29%), Gaps = 33/304 (10%) Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFD-YRKITTKHIRSGVE 124 +++ + +R+ + ++ ++ + ++ G+ D + + Sbjct: 2 TKKSIREIAMAWREDKRPY-VKQSTFAAYMLILENHLLPYFGESDALSEKAVQDFVLQKL 60 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + + S L ++++ K+ V+ E++ + K + + T ++ Sbjct: 61 NGGMSVKSVKDILIVLKMVMKFGVKHEWMNYSEWDIKYPTTEKNKELEVLTVAHHKKILD 120 Query: 185 FWSEGSQPR-LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 + + R L L +GLR + C + + +I Q+T I + + Sbjct: 121 YIRQNFTFRNLGIYISLSTGLRIGEVCALRWSDIDVDSGTISVQRTIERIYIIEGEMKHT 180 Query: 244 LLAMTPIGKETFFINNDKQ--------------------------KMNATQFSIWFKAKA 277 L + + + ++K Sbjct: 181 ELVINTPKTKNSCREIPMSKELLALVKPLKKVVNADYYILTNEPLPTEPRTYRNYYKRLM 240 Query: 278 TKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLGIK 334 G+ K HG+R AT ++ + G + Y ++ + I Sbjct: 241 EHLGIPKLKFHGLRHSFATRCIESNCDYKTVSVLLGHSNISTTLNLYVHPNMEQKKRCIA 300 Query: 335 NSRR 338 + Sbjct: 301 KMFK 304 >gi|322690727|ref|YP_004220297.1| phage integrase [Bifidobacterium longum subsp. longum JCM 1217] gi|320455583|dbj|BAJ66205.1| phage integrase [Bifidobacterium longum subsp. longum JCM 1217] Length = 379 Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats. Identities = 46/368 (12%), Positives = 95/368 (25%), Gaps = 62/368 (16%) Query: 39 HESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESY 98 T A P + LK + + L ++ ++ S Sbjct: 3 RGRTKAIALKRLKDKKLEYERSGRMPSQTTPYLKDWLDRWLDEIVKPRLRPSTLATYRST 62 Query: 99 FDQ-IIRKSGDFDYRKITTKHIRSGVE------------SRKHTPSSAIQFLTSMRVLFK 145 + I G ++ KH R E + + ++A ++ Sbjct: 63 VEALIKPAIGGVRLGRLEPKHFRLMEEYITKGDDTCDPPRKPRSSATAGSAWRTLHKALD 122 Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205 AV++ + NP E P+ + T Q + + L + +G+R Sbjct: 123 DAVKEGIIESNPSDRAEAPRVVYTERKILTPVQAGQLINAEN-DVMWHLMWRLAYETGMR 181 Query: 206 CSDSCRAGVQHLQNNIFSIKTQKTGT---------------------------------- 231 + +Q ++ Sbjct: 182 QGERLGLTNSEIQLIDNAVCIVVEWQLKVYNNVKGVRDIPSSLGARHVTGKAYLVPPKTN 241 Query: 232 --IITVELPDGFMKLLAMTP------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 + LP+ L + F+ D +N + +K + G+ Sbjct: 242 AGRRVIPLPESLAVELGRYIKGTGRTNSDDLVFVQADGTPLNRMIETRAWKKALNRVGLP 301 Query: 284 --KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKG--ADRIRLGIKNSRR 338 H R +AT A G + + G + YT AD + I Sbjct: 302 DDYVPHSARHTAATAMAQLGMSDKVRESIMGHSDISVTNRVYTHVGTADASK-AINGVET 360 Query: 339 ISSVVDSD 346 + ++ ++ Sbjct: 361 LLALEPAN 368 >gi|288906333|ref|YP_003431555.1| integrase/recombinase, phage associated [Streptococcus gallolyticus UCN34] gi|325979346|ref|YP_004289062.1| phage integrase family integrase/recombinase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288733059|emb|CBI14640.1| integrase/recombinase, phage associated [Streptococcus gallolyticus UCN34] gi|325179274|emb|CBZ49318.1| phage integrase family integrase/recombinase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 388 Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats. Identities = 57/389 (14%), Positives = 117/389 (30%), Gaps = 57/389 (14%) Query: 10 FVTKERTRHGKIIYY------FRKGHGRRIRLPYP--HESTFIPAYMSALTGSTPKREYI 61 + + + G +Y G++ R + A+T Y Sbjct: 2 NIKEVIKKDGTKVYRSNVYLGVDSITGKKARTSVTARTKKELKQKAKQAITAFIN-NGYT 60 Query: 62 NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIR 120 + T K L + S ++ +N+R + E ++ GD+ K+TT I+ Sbjct: 61 TKTKTNIRTYKELAYLWWDSCK-NTVKINTRKAVEGQIRVHLLPAFGDYKLEKLTTPIIQ 119 Query: 121 SGVESRKH--------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE--- 169 V + + Q + + ++AV + + NP V P++K Sbjct: 120 QQVNKWANDYNKGKKGSYKHYNQLHALNKRILQYAVIMQLIPFNPAREVIVPRKKQTEEV 179 Query: 170 GIRPWTKEDMQQFKSF-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222 I+ K++++QF + + ++ LL +G R + + + Sbjct: 180 KIKFLDKQELKQFYDYLDTLDKSKYYNLFDVVLYKTLLATGCRIGEVLALEWSDIDLDNG 239 Query: 223 SI-----------KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM------- 264 I ++ +L + ++ Sbjct: 240 YISINKTLNRDDEVNCPKSKAGYRDISIDKATILMLKHYKNRQTIQAWQHKRTETVVFST 299 Query: 265 ------NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD 317 + + AGV+ S HG+R ATI +AG +L G + Sbjct: 300 FVNKYASQPALRRRLERHLKNAGVSYVSFHGLRHTHATIMLNAGIQPKDLQYRLGHSDIS 359 Query: 318 QA-ETYTKGADRIRLGIKNSRRISSVVDS 345 TY ++ S ++S Sbjct: 360 MTLNTYVHAT--KEGAKNSASFFESAINS 386 >gi|247663508|gb|ACT09079.1| IntI1 [Vibrio cholerae] gi|247663514|gb|ACT09082.1| IntI1 [Vibrio cholerae] Length = 313 Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats. Identities = 35/300 (11%), Positives = 84/300 (28%), Gaps = 52/300 (17%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132 ++ + R+ + ++ + ++ + IR G + + + + + + S Sbjct: 16 VLDQLRERIRYLHYSLPTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 ++ L + + + + RP+ T +++ + + Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230 RL + L +G+R S+ + V+ L + +I ++ Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193 Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265 + + A + + M Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253 Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 F FK +AG+ K + H +R AT +G + G V YT Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313 >gi|126437019|ref|YP_001072710.1| phage integrase family protein [Mycobacterium sp. JLS] gi|126236819|gb|ABO00220.1| phage integrase family protein [Mycobacterium sp. JLS] Length = 424 Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats. Identities = 51/345 (14%), Positives = 108/345 (31%), Gaps = 44/345 (12%) Query: 19 GKI-IYYFRKGH-GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76 GK+ + R R AY++ LT + EY++ PRK T + Sbjct: 55 GKVSRWRVRWVDASGAERTKSFQRKPDAQAYLNGLTADVQRGEYVD-PRKSAETFGSVAE 113 Query: 77 EYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESR------KHT 129 ++ + + + S D + + K ++I + + + + + T Sbjct: 114 QWFATKQHR--KPKTVAGYRSLLDTVVLPKWESVQLKRINYESYSTWLGALSVDGGQRGT 171 Query: 130 PSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVER----PKRKTEGIRPWTKEDMQQF 182 SA + + + K+A R VA N ++R P++ R T ++ Sbjct: 172 GLSASRITQAHQLVGAVLKYAQRTGKVAKNVAFEIKRDEDLPEQGERERRYLTHAEL--- 228 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----------------- 225 + L Y GLR ++ +H+ + + +++ Sbjct: 229 LMLAKAADRFETLTLVLGYCGLRFGEAVALRRRHVGDRMLTVRSSATAVTGKGIVESTTK 288 Query: 226 -TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN- 283 + + + L P + + F G++ Sbjct: 289 TKRDRHVPVPEPVWKKLKAELPADPNALVFPSRKGGFLPLGE--YRWAFDNACADIGIDG 346 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD 327 HG+R +A+++ AGA + G T + Y + Sbjct: 347 LVPHGLRHTTASLAISAGANVKVVQRLLGHATAAMTLDRYGHLLN 391 >gi|55980943|ref|YP_144240.1| integrase/recombinase [Thermus thermophilus HB8] gi|55772356|dbj|BAD70797.1| integrase/recombinase [Thermus thermophilus HB8] Length = 313 Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats. Identities = 42/275 (15%), Positives = 92/275 (33%), Gaps = 20/275 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144 + + R + + +R+ + + P FL ++R + Sbjct: 42 RGYSPRGVRRYLQDLAFWFRFLEAEGLSP-SPEAVRALLLRERWAPRRVQGFLAALRSYY 100 Query: 145 KWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF---EFLL 200 ++ + A +P + RPK E++++F + E + L FL Sbjct: 101 RYLREVKGEAASDPTEGIGRPKAGRRLPLHPGPEELKRFLEAFREEKEAALLEALARFLY 160 Query: 201 YSGLRCSDSCRAGVQHLQ----NNIFSIKTQKTGTIITVELPDGFMKLL------AMTPI 250 +GLR S++ +++ + + K V L ++L Sbjct: 161 GTGLRISEALSLKGRNVVLEGGSPVAVRVVGKGNKERLVPLSKTAREVLEALGRPQGNVN 220 Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHEL 307 +A F+ A +AG++ + H +R AT+ + G + Sbjct: 221 IFTFSQGRRKGHVPSARWVEAKFREAALRAGLDPRRFTPHKLRHAYATLLVERGVELDAV 280 Query: 308 MATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342 G +++ + Y A R RL + + R+ + Sbjct: 281 KDLLGHESIATTQIYLH-ASRERL-REAASRLPEL 313 >gi|331087780|ref|ZP_08336706.1| hypothetical protein HMPREF1025_00289 [Lachnospiraceae bacterium 3_1_46FAA] gi|330409761|gb|EGG89197.1| hypothetical protein HMPREF1025_00289 [Lachnospiraceae bacterium 3_1_46FAA] Length = 400 Score = 99.8 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 54/371 (14%), Positives = 107/371 (28%), Gaps = 68/371 (18%) Query: 19 GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78 G+ I F G+R L + A+ + E+ + + TL + Sbjct: 20 GRYIARFTSKTGKRKTLYDFKLNELKRKLREAVY----EDEHGLNGNGESITLNAWYVTW 75 Query: 79 RKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAI 134 + ++ + + SY++ ++ G + I T H++ + + + Sbjct: 76 TELYKKKTVKMTTIYKNHSYYNSRVKNSIGKMYLQDIKTYHVQKFLNDLIDSGLAHGTVS 135 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194 + + AV EY+ NPC+ VE PK + R TKE+ ++F +F S + Sbjct: 136 NIRFMLSDMLDKAVLSEYIRKNPCIGVEMPKEVKKERRVLTKEEQEKFFTFASSYIHINV 195 Query: 195 AFEFLLYSGLRCSDSCRAGVQH-------------------------------------- 216 F + +G R + + Sbjct: 196 LK-FAVTTGCRIGEVLGLKWEDCDFEKREIIINKTIHYSKASSPVEGSKFFYTTAKTISS 254 Query: 217 ---LQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273 + + + I E + + F +D + + Sbjct: 255 NRVIPMTDEVYEILQNQKIKQTEQKMWKRSIWKQHKEFQNLVFTCSDGSPVYYYNVNSAI 314 Query: 274 KAKATKAGV------------NK-----SAHGVRKFSATISADAGATAHELMATYGWKTV 316 K K V K + H +R AT + G + G T+ Sbjct: 315 KDYVAKINVIEIELAKEEKREPKIFELFTCHTLRHTYATRCYENGVDQQVVQKLLGHSTL 374 Query: 317 DQ-AETYTKGA 326 + YT + Sbjct: 375 AMTTDLYTHVS 385 >gi|227512453|ref|ZP_03942502.1| bacteriophage integrase [Lactobacillus buchneri ATCC 11577] gi|227084426|gb|EEI19738.1| bacteriophage integrase [Lactobacillus buchneri ATCC 11577] Length = 374 Score = 99.8 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 48/373 (12%), Positives = 109/373 (29%), Gaps = 47/373 (12%) Query: 14 ERTRHGKIIYYF---RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 + +G I G RRI + + + K + T Sbjct: 5 YKRANGNWIARVSYKENGEYRRINQGGFRTRKLAQTWATEIESRRNKGNVLTYSE---TF 61 Query: 71 LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--K 127 L +E+ ++ LA N+ + + S + ++IT + + Sbjct: 62 LPDFFNEWYQTFKSPKGLADNTVQIYAFTKHVLANSSLNMPLKEITFTDYQQFFNQLGKR 121 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-------RPKRKTEGIRPWTKEDMQ 180 ++ SS Q T +R + A++ + N VE K + K Sbjct: 122 YSVSSLRQVNTIIRACVRKALQMRQIPYNFTDDVEISGKASAPLSSKYLEVDDIKKLTDY 181 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--------------QNNIFSIKT 226 + ++A F L +G R ++ + + KT Sbjct: 182 CVANIKEITDVSKMAILFSLLTGARFAEVAGMTWDCVNFKEKTITINKTIGMQSRTFEKT 241 Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFF-------------INNDKQKMNATQFSIWF 273 + + ++ T+ + + +L + + + + + + Sbjct: 242 KNSSSVRTLSINFTLLTMLQKWKLISDHHMLKVGFKNPMNLVFYTPFHRPLYNSMVNNDL 301 Query: 274 KAKATK-AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK--GADRI 329 K K S HG+R A+ G + + G K++ + Y A Sbjct: 302 KKICRKNLSQEISFHGLRHSHASYLIAKGISVQYVSKRLGHKSIGTTQNVYIHFLKAAET 361 Query: 330 RLGIKNSRRISSV 342 + + + ++ + Sbjct: 362 KENEQAQKMLNEL 374 >gi|212499734|ref|YP_002308542.1| integrase [Bacteriophage APSE-2] gi|238898725|ref|YP_002924406.1| APSE-2 prophage; integrase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|211731703|gb|ACJ10191.1| integrase [Bacteriophage APSE-2] gi|229466484|gb|ACQ68258.1| APSE-2 prophage; integrase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 381 Score = 99.8 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 49/378 (12%), Positives = 111/378 (29%), Gaps = 59/378 (15%) Query: 17 RHGKIIY-YFRKGHGRRIRLP-YPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 + GKI Y + G+RI+ + + ++ T Sbjct: 5 KRGKIWYGSYTTPCGKRIKESLGTEDKKQAQELHDKRKAELWRIAKLDDF--PNVTFDEA 62 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---------RSGVES 125 + + S + + + +T I R Sbjct: 63 CLRWIEEKANKK----SLDDDKGRLGFWLLYFSGTRLKDMTEAKIYSAISKMKNRQQQLR 118 Query: 126 RKHTPSSAIQ--------------------FLTSMRVLFKWAVRQEYVAINPCLSVERPK 165 K +SA + L ++ + + + +++ I ++ P Sbjct: 119 WKSRVNSAKRKGIEIPAYQAKEVSIATKAKHLALLKSMMR-SAERDWKWIEKSPVIKVPS 177 Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----I 221 + + IR ++ ++ + E R EF L +GLR S+ + Sbjct: 178 AREKRIRWLEPDEAERLINECPE--PLRSTVEFALATGLRRSNIINLAWSQIDMQRKVAW 235 Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI---------- 271 + K+G I V L D +L + + + + Sbjct: 236 IEPENSKSGKAIGVALNDTACCILTRQLGNHQKWVFVHTMSAKRSDGSQTNSIRKMRVDS 295 Query: 272 --WFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 ++A +AG+ H +R A+ +G L GW++++ Y + Sbjct: 296 NTAWRAALKRAGIENFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLSPS 355 Query: 329 IRLGIKNSRRISSVVDSD 346 +++++I + +D Sbjct: 356 H--LTEHAKKIDEALAND 371 >gi|217963765|ref|YP_002349443.1| integrase/recombinase, putative [Listeria monocytogenes HCC23] gi|217333035|gb|ACK38829.1| integrase/recombinase, putative [Listeria monocytogenes HCC23] gi|307571661|emb|CAR84840.1| integrase/recombinase, putative [Listeria monocytogenes L99] Length = 314 Score = 99.8 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 38/267 (14%), Positives = 93/267 (34%), Gaps = 18/267 (6%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG----DFDYRKITTKHIRSGVESRK-- 127 + E+ +S ++ + + + + R ++ + + + K Sbjct: 26 VFQEFIRSRRIRNVRETTIQYYTDAINVLKRDREYIHVQKPIMHLSQRDLEDMIMYWKGF 85 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED-----MQQF 182 ++ + + + + + +Q ++ INPC ++ + + E ++ Sbjct: 86 MRANTINSKIKAFKAYYNFLYQQGFIKINPCENLSLLRVREEIRETLNPDEIKKIANHFK 145 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242 K + + F+ LL +G+R S++ +Q + ++ + K V + Sbjct: 146 KKETFSSYRDLVIFQLLLDTGIRISEAVGINIQDIHSDYIIVVESKNLKQRIVYISKRMR 205 Query: 243 KLLAMT-----PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSAT 295 + L + FIN D+ N F + G+ K S H R+ A Sbjct: 206 EKLTSYLKIRGNLSHTKVFINRDQLPYNKNTFQQNLREARVLCGIQKQVSPHVCRRTYAK 265 Query: 296 ISADAGATAHELMATYGWKTVDQAETY 322 + +G A L G +++ + Y Sbjct: 266 NAILSGMDAFSLATLLGHSSLEVTKRY 292 >gi|186896553|ref|YP_001873665.1| integrase family protein [Yersinia pseudotuberculosis PB1/+] gi|186699579|gb|ACC90208.1| integrase family protein [Yersinia pseudotuberculosis PB1/+] Length = 327 Score = 99.8 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 48/300 (16%), Positives = 96/300 (32%), Gaps = 16/300 (5%) Query: 28 GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87 +G+RIR + A+ + + ++E+++ P +L L + + + Sbjct: 20 RNGKRIR-RTFSKKHEAVAFEKYVVVNYHEKEWLSKPTD-KRSLSELSTLWW---SYHGQ 74 Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLF 144 ++ ++ ++IR D +I I R SS + L + +F Sbjct: 75 NMDYGQKYKVQLAKVIRIMSDLCAFQIDKNVIARYRAIRLAGGVKASSVNRDLAVLSGMF 134 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204 + L+ + + R + + + +G R+A L +G Sbjct: 135 TALINAGVYHSEHPLAGISKLKPKQTARAFLSQSEIKELLNCLDGDNRRVAILC-LSTGA 193 Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264 R ++ + +H+ +N + K G TV + L G Sbjct: 194 RWGEAIKLRTEHIIDNRITFVATKNGKQRTVPISRDVFNDLTAMKSGLLFNDAAYLI--- 250 Query: 265 NATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 F K+ T ++ H +R AT G L G T+ Q Y Sbjct: 251 ----FRQKLKSVKTDLPQGQATHVLRHTFATHFMINGGNIITLQRILGHSTIQQTMLYAH 306 >gi|296160164|ref|ZP_06842983.1| integrase family protein [Burkholderia sp. Ch1-1] gi|295889638|gb|EFG69437.1| integrase family protein [Burkholderia sp. Ch1-1] Length = 345 Score = 99.8 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 51/327 (15%), Positives = 87/327 (26%), Gaps = 23/327 (7%) Query: 15 RTRHGKIIYYF--RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 R R G +++ R G R+R + A + + Sbjct: 4 RKRKGSDVWHIDIRTPGGGRLR-QTTGTADKKEAQELHDKLKHEAWRVAKMGERPRYVFE 62 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS--------GVE 124 + Y ++ + D IT I + Sbjct: 63 QAAARYLTEQSNK----ADYDDRAAHIRHFLTHFAGRDLGSITRPEIMAAIPTESPKKHR 118 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 P++ ++L ++R L A + E P+ W D + Sbjct: 119 KTPLKPATRNRYLATIRALLLDAAKDWEWIDRAPSLPEFPE--PTIRVRWITRDEAKRLL 176 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDG 240 + + R F +GLR + + + K I V L D Sbjct: 177 RALDETCMRDITAFCFATGLRQRNILELEWSQVDLVSRRAWIHPDQAKARKPIGVPLNDE 236 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISAD 299 + LL ETF D + + +++ A + N H VR A+ Sbjct: 237 AIALLRKQIGQHETFVFVRDGKPLKKWD-DWKWRSACRLANISNFRFHDVRHTWASWHVQ 295 Query: 300 AGATAHELMATYGWKTVDQAETYTKGA 326 G L GW T + Y A Sbjct: 296 NGTPLQVLKELGGWATFEMVLRYAHLA 322 >gi|293606638|ref|ZP_06688993.1| phage integrase family site-specific recombinase [Achromobacter piechaudii ATCC 43553] gi|292814922|gb|EFF74048.1| phage integrase family site-specific recombinase [Achromobacter piechaudii ATCC 43553] Length = 329 Score = 99.8 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 56/331 (16%), Positives = 104/331 (31%), Gaps = 35/331 (10%) Query: 5 LRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64 LPP V + +HG YY + G R+ P T ++P Sbjct: 9 KHLPPCVYE---KHG-AYYYVKAGKWTRLAADLP-------------AALTEYARRFDNP 51 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 R L+ + L+ N+ ++ +I +F +I KH+ + Sbjct: 52 RGGMP---ELVEKVLTHISPK-LSKNTIHQYKIAAARIKDSFAEFAPDQIRPKHVAALKM 107 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 TP+ A + L+ ++ +F AV + V NPC+ + R D + Sbjct: 108 DMADTPNMANRVLSFLKTVFAHAVEWQLVDSNPCVGIRRHAEGKRQRY---ITDDEYAAI 164 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 + + ++ + L +G R D + + QKTG + V Sbjct: 165 YAKANPRMQVIMDLLYLTGQRVGDVIAIKRADMNEEGIAFDQQKTGAKLLVRWTPELRDA 224 Query: 245 LAMTP-------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATI 296 ++ ++ K + +K AGV H +R S T Sbjct: 225 ISRANALNGNVLGPTLFRTRSHGKTAPSYGATRDQWKDAVDAAGVPDAHIHDLRAKSLTD 284 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGAD 327 + G G + + Y + + Sbjct: 285 AKRQGKD---AQMLAGHTSPTMTDRYIRLRE 312 >gi|16766051|ref|NP_461666.1| phage tail-like protein [Enterobacteria phage Fels-2] gi|169936064|ref|YP_001718763.1| P2 Int-like protein [Enterobacteria phage Fels-2] gi|197250527|ref|YP_002147666.1| phage integrase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|200388896|ref|ZP_03215508.1| phage integrase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|16421285|gb|AAL21625.1| Fels-2 prophage protein [Enterobacteria phage Fels-2] gi|197214230|gb|ACH51627.1| phage integrase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|199605994|gb|EDZ04539.1| phage integrase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|312913759|dbj|BAJ37733.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321223527|gb|EFX48592.1| Phage integrase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] Length = 341 Score = 99.8 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 46/339 (13%), Positives = 91/339 (26%), Gaps = 47/339 (13%) Query: 14 ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + +GK + Y G+R+R A+ + K+ ++ + L Sbjct: 4 RKQPNGKWLCECYPNGRDGKRVR-KQFATKGEAIAFENHTMDEVNKKPWLGEKEDRRH-L 61 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESR-- 126 +I ++ SL + + + I GD ++T E+R Sbjct: 62 SEVIDQW------HSLYGQTLADPKRLMAKLSIICNGLGDPIASELTAGDFTKYREARLK 115 Query: 127 ------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 P + ++ +F + + + L+ + EG + Sbjct: 116 GEVKNEDGVLMSPVKPRTVNLEQRNLSSVFGTLKKLGHWSAPNPLAGLPTFKIAEGELAF 175 Query: 175 TKEDMQQFKSFWSEGSQ---PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 + + SQ + + L +G R S++ L + K Sbjct: 176 LAPEEIKRLLDACADSQSPSLLMIAKVCLATGARWSEAENLQGHQLSKYRITYTKTKGKK 235 Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK----SAH 287 TV + L T F+ +AG+ H Sbjct: 236 NRTVPISQDLYDELPKNRGKLFTPC-------------RKAFERAVKRAGIELPEGQCTH 282 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 +R A+ G L G + Y A Sbjct: 283 VLRHTFASHFMMNGGNILVLRDILGHADIKMTMVYAHFA 321 >gi|222149050|ref|YP_002550007.1| phage-related integrase [Agrobacterium vitis S4] gi|221736035|gb|ACM36998.1| phage-related integrase [Agrobacterium vitis S4] Length = 311 Score = 99.8 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 54/289 (18%), Positives = 100/289 (34%), Gaps = 21/289 (7%) Query: 37 YPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFE 96 P F ++ +T+ LI EYR++A + +L+ ++R +E Sbjct: 4 KPGTKAFTQEFLRLTRDRQKP--------AIASTIGSLIDEYRQTARYKALSPSTRRDYE 55 Query: 97 SYFDQIIRKSGDFDYRKI----TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY 152 F I + GD + + + S + K +P SA + + LF WA EY Sbjct: 56 RIFGAIRLEYGDCPLAAVEARGSRRGFLSWRDKMKDSPRSADMHIALLSRLFVWAKDSEY 115 Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212 + NP VER + W+ + + R + L++ R +D Sbjct: 116 IMRNPLERVERLHEGSRKDIIWSSNQIDKLL--AEASPHIRDVAKVALWTMQRQADILTM 173 Query: 213 GVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF-INNDKQKMNATQFSI 271 SIK KTG + V M +L + +N+ Q ++ F Sbjct: 174 PTLAFDGERLSIKQGKTGARVRVIAAPDLMPMLRKAKEAQRQRVLVNSFGQNWTSSGFRA 233 Query: 272 WFKAKATKAGVNK-SAHGVRKFSATISAD-----AGATAHELMATYGWK 314 ++ + + G+ + H +R + T + + G Sbjct: 234 SWRKEMARLGIKGVTFHDLRGTAITFAYAHLDRPHDEKIKLISEISGHS 282 >gi|325273529|ref|ZP_08139763.1| integrative genetic element Ppu40, integrase [Pseudomonas sp. TJI-51] gi|324101336|gb|EGB98948.1| integrative genetic element Ppu40, integrase [Pseudomonas sp. TJI-51] Length = 360 Score = 99.8 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 44/330 (13%), Positives = 93/330 (28%), Gaps = 32/330 (9%) Query: 27 KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN-----SPRKKPTTLKWLISEYRKS 81 + R E+ A A + PK SP K TL+ + Sbjct: 17 RNDRYRQTFATEEEAKADEARELARRAALPKAVRGEGTGTISPLKSRKTLQEAYDLTFRL 76 Query: 82 AHWGSLAVNSRISFESYFD--QIIRKSG-DFDYRKITTKHIRSG---VESRKHTPSSAIQ 135 G + + + +++ G D ITT+ I E ++ S+ + Sbjct: 77 EWKGGKSEKTM-----TLNGGNVLKALGADTLLSDITTETITEMVLEFEDLGNSGSTVNR 131 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195 L+ + ++ K AV ++ P + + + +E + Sbjct: 132 KLSLLSMVLKTAVNHNWLLSVPRMIRRKEGKHRIRWMNTEEEGNVLKACQHLGLNCLHDF 191 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKE 253 + +G R ++ Q + + K G + ++L + Sbjct: 192 IIVAVDTGFRRAELLGLSAPDFQEGMIHLYAGQTKNGDARAIPATSRVARILHRRRMNLT 251 Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVNKSA----HGVRKFSATISADAGATAHELMA 309 TF + + G+ + H +R A+ G + Sbjct: 252 TFEGL------TVSSLRHQWATLRAYMGMEEDPQFIVHMLRHTCASRLVQRGVPLASVQH 305 Query: 310 TYGWKTVDQAETYTKGAD----RIRLGIKN 335 G K ++ Y A + R ++ Sbjct: 306 WMGHKNINTTLRYAHLAPENLMQARNALEA 335 >gi|258648850|ref|ZP_05736319.1| phage-related integrase [Prevotella tannerae ATCC 51259] gi|260850864|gb|EEX70733.1| phage-related integrase [Prevotella tannerae ATCC 51259] Length = 341 Score = 99.8 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 43/307 (14%), Positives = 85/307 (27%), Gaps = 41/307 (13%) Query: 71 LKWLISEYRKSA--HWGSLAVNSRISFESYFDQIIRKSGDFD--------YRKITTKHI- 119 ++ + S L+ N+ ++ + F I +T ++ Sbjct: 5 FAKHLTRFFTSYLSGECGLSHNTIRAYGNTFLSFIDFMEKTRRVKADRLSLEHLTRDNVS 64 Query: 120 ---RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 R E++ S+ Q L + K+ + + + S+ K K + + Sbjct: 65 DFLRWTEENKGCGISTRNQRLAAFHTFSKYMLYGDIFHLEQWQSILSIKSKRSEKQSVSY 124 Query: 177 EDMQQFK-------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQ 227 + K G + L SG R + L Sbjct: 125 LSVDGIKLLLSLIPVNTRNGLRDLALIALLYDSGARVQELIDLTPMDLHLVKPYYVSLFG 184 Query: 228 KTGTIITVELPDGFMKLLAMTPI---------GKETFFINNDKQKMNATQFSIWFKAKAT 278 K V L + ++LL + F NN +K+ + Sbjct: 185 KGRKRRLVPLQEQQVELLKKYMEAEGLLKQSLNQHPLFANNRGEKLTNAGVTFILMRYVR 244 Query: 279 KAGV--------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRI 329 A V S H +R A AG + G ++ E Y + + + Sbjct: 245 NAHVADPDLVPAKVSPHSLRHSKAMHLLQAGVNLVYIRDILGHVSIQTTEIYARADSKQK 304 Query: 330 RLGIKNS 336 R ++ + Sbjct: 305 REALEAA 311 >gi|237811823|ref|YP_002896274.1| site-specific recombinase, phage integrase family [Burkholderia pseudomallei MSHR346] gi|284159933|ref|YP_001058564.2| phage integrase family site specific recombinase [Burkholderia pseudomallei 668] gi|237502971|gb|ACQ95289.1| site-specific recombinase, phage integrase family [Burkholderia pseudomallei MSHR346] gi|283775097|gb|ABN83658.2| site-specific recombinase, phage integrase family [Burkholderia pseudomallei 668] Length = 339 Score = 99.8 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 46/350 (13%), Positives = 110/350 (31%), Gaps = 43/350 (12%) Query: 16 TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75 R + RK + + + A+ + + + + + TTL L+ Sbjct: 6 KRENGWMCQVRKKGYPATSKKFATKIEAL-AWGRMIESEMDRGLFASRNDAERTTLADLL 64 Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESR--KHTP 130 Y ++ ++ S S + + ++ G + +T H+ ++R + +P Sbjct: 65 DRY-----TRDISP-TKRSGGSDMGRAGKLKKQLGAYKLTALTASHLVDYRDARLKEVSP 118 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 + + L + + A R+ + + + RK +G D Q +E Sbjct: 119 QTVVHELNLLNRVLTLATREWGIVLPAGVPKVIKPRKPQGRDRRLHPDEIQAIIDATESL 178 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMT 248 R + +G+R + + + + KT + TV L + +L Sbjct: 179 DLRDFIRLAVATGMRRGELASLRWESIDLARRTAHLPVTKTDSPRTVPLSTDAVTILHAR 238 Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAG-------------------VNKSAHGV 289 + + N + + F +A + H + Sbjct: 239 RVAQCVAPFNV-----TSDALTRAFCRAVQRARKLYVSTCAVLDRPIDSNWLIGIRLHDL 293 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 R + + + G E+ + G KT+ + YT ++++ Sbjct: 294 RHEATSRLFEKGLNPMEVASITGHKTLSMLQRYTHL-----RAEDLAKKL 338 >gi|237718114|ref|ZP_04548595.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4] gi|229452535|gb|EEO58326.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4] Length = 390 Score = 99.8 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 50/238 (21%), Positives = 80/238 (33%), Gaps = 17/238 (7%) Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS---VERPKRKTEGIR 172 E R + ++A ++L AVRQ + NP ER + K Sbjct: 157 PNSHIKYGEPRPISENTASRYLGMFSTALNNAVRQGIIRNNPMKELDARERIQPKDGKKE 216 Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN------IFSIKT 226 T E+++ + S + + AF F ++GLR SD R H+ ++ Sbjct: 217 YLTIEELRTLMATDSYRPEVKEAFIFACFTGLRLSDMYRLAPMHIFKTADGKGEYIDMEM 276 Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284 QKT + + L + + L FF T + A AG+ K Sbjct: 277 QKTEKPVIIPLSEEAKRWLPKPRGNDIPFFDI----PTTQTVIGRALRKWAEAAGIEKHI 332 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342 S H R T+ GA G + E Y K D+ + + I + Sbjct: 333 SFHSSRHTFGTMMLTLGADLFTTSKLMGHSNIQTTEIYAKIVDKKK--EEAINLIDGM 388 >gi|225870178|ref|YP_002746125.1| integrase [Streptococcus equi subsp. equi 4047] gi|225699582|emb|CAW93207.1| putative integrase [Streptococcus equi subsp. equi 4047] Length = 388 Score = 99.8 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 50/373 (13%), Positives = 105/373 (28%), Gaps = 51/373 (13%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKG---HGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60 + P + T+ GK YY R+G G++ + T A +ALT K E Sbjct: 5 KTKYP-NIFTYDTKKGK-RYYVRRGYYLKGKKKEATKSNLKTLQEA-RAALTEIEQKIEN 61 Query: 61 INSPRKKPTTLKWLISEYRKSA-HWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKH 118 + K T+ + Y + GS ++ + E+ + + G + I+ Sbjct: 62 NDFAYNKNLTVDQYWNMYVDNRLKTGSWKPDTEANKEAIYKTHFKKYLGKTKMKDISRIE 121 Query: 119 IRSGVESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIRP 173 + + + ++ ++ + + + AV + + NP + + Sbjct: 122 YENHINGMRKNYSKNTLRLIHSVLNAMLNHAVTNKMLDDNPIDGITIGDSEIIPVNKRIS 181 Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYS------------------------------- 202 + + S + Sbjct: 182 LEEFKEWDSWAKKSLIQYDYTIVRMTYFGARSSEVVAIKIGNLTKLENGRYRILLDESRT 241 Query: 203 -------GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255 G++ S R L+ + + I + K + + Sbjct: 242 YHRPNGGGMKTPGSERFMEVDLETSHYIDDVVVESKRIAKKYNRILSKEDYLFLTNFKNA 301 Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKT 315 ++ + F K+G++ + H +R F AT AG + A G T Sbjct: 302 KKELLGMPISIRRVYKLFNTVNEKSGMHVTPHMMRHFFATQGQIAGVPIEHMAAALGHST 361 Query: 316 VDQAETYTKGADR 328 YT + Sbjct: 362 SYMTSKYTHIKEE 374 >gi|116749674|ref|YP_846361.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB] gi|116698738|gb|ABK17926.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB] Length = 348 Score = 99.8 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 43/322 (13%), Positives = 94/322 (29%), Gaps = 20/322 (6%) Query: 15 RTRHGKIIYY-FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 R G++ + + RIR A T + P + +L Sbjct: 3 VYRRGEVYWVDVKVKGHPRIRKSAATSERLKALDFEAALRRTLTGVVSHEPIRGEMSLSE 62 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESR---KHT 129 ++ K + + + ++ K G D + I +R V ++ Sbjct: 63 AMARAFKVHWNHKKSAKTV---GFHARSLLEKLGNDIRLKDIGENEVRGLVRQLQSDGNS 119 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 ++ L+ ++ L + + + V K K +R + E+ + + Sbjct: 120 AATINSKLSVLQTLLRMSCNEWRVIDRVPRFDR-LKEKEGRLRTLSPEEESRLLALLRRT 178 Query: 190 SQPRLAFEFL--LYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLA 246 + A ++ L +G S+ + + ++G + + +L Sbjct: 179 GRHDAADLYMVLLDTGASLSEVLSLKWKGVDLVGGKIGIDVESGRNRILPMTRRVRSMLM 238 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA----HGVRKFSATISADAGA 302 +N Q +K + G+ H +R A + G Sbjct: 239 QRMGMGIKSPFSNV----TYQQAEYNWKWVRKQMGLGGDPGFVIHSLRHTFAARTVQRGI 294 Query: 303 TAHELMATYGWKTVDQAETYTK 324 L A G T+ E Y + Sbjct: 295 GLPALKALLGHSTIRLTERYAR 316 >gi|290474206|ref|YP_003467083.1| prophage integrase [Xenorhabdus bovienii SS-2004] gi|289173516|emb|CBJ80296.1| prophage integrase [Xenorhabdus bovienii SS-2004] Length = 385 Score = 99.8 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 47/379 (12%), Positives = 104/379 (27%), Gaps = 57/379 (15%) Query: 17 RHGKIIY-YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75 R G Y + G+RI+ + A T Sbjct: 5 RRGNTWYGNYTTPSGKRIKESL-GTTDKKQAQELHDRRKAELWRIERLGDFPDVTFDEAC 63 Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS---- 131 + + S + + + IT I + + ++ S Sbjct: 64 LRWIEEKADKK----SLDDDKGRMAFWLEYFEGVRLKDITEARIYTAISKMRNRKSKQRW 119 Query: 132 -------------------------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 + + L+ M+ L + A +++ + ++ P Sbjct: 120 ESRVTAAQKKGKEVPAYTEVSVSVATKAKHLSLMKSLLR-AAERDWKWLEKAPVIKVPAV 178 Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226 + + +R + Q+ E Q +F L +GLR S+ + Sbjct: 179 RDKRVRWLEPHEAQRLIDECPEPLQS--IVKFALATGLRRSNIINLEWSQIDMQRQVAWI 236 Query: 227 QKTG----TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF------------S 270 I V L + ++L + + K N + Sbjct: 237 HPDQSKSARAIGVALNETACRVLRAQIGNHNKWVFVHTKPSTNPDGIVMPNIRKMRVDDN 296 Query: 271 IWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + + +AG+ + H +R A+ + L GW++++ Y A Sbjct: 297 TAWNSALKRAGIEDFRFHDLRHTWASWLVQSDVPLSILQEMGGWESIEMVRRYAHLAPNH 356 Query: 330 RLGIKNSRRISSVVDSDDP 348 +++R+I + + P Sbjct: 357 --LTEHARQIDELFGNLVP 373 >gi|116254511|ref|YP_770347.1| putative integrase/recombinase protein [Rhizobium leguminosarum bv. viciae 3841] gi|115259159|emb|CAK10274.1| putative integrase/recombinase protein [Rhizobium leguminosarum bv. viciae 3841] Length = 331 Score = 99.8 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 32/311 (10%), Positives = 81/311 (26%), Gaps = 37/311 (11%) Query: 74 LISEYR--KSAHWGSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRSGV 123 LI + + A +++ ++ S+ F +++ + + + I + + Sbjct: 8 LIERFFGQRLARQRNVSPHTIASYRDTFKLLLKFAHRRTGKYPSALRLEDLDAELIVAFL 67 Query: 124 ES----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL-------SVERPKRKTEGIR 172 + R +P++ LT++R F++ +E + + +R Sbjct: 68 DDLDSGRHASPATYNLRLTAIRGFFRFLAFEEPAYSGQIQRVLAIPGKIGSKREVQFLLR 127 Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--G 230 + + G + + + +G+R S+ + + Sbjct: 128 NEIEAILSAPDRRTWVGRRDYVLLLTAVQTGMRLSELVGLDRSAVTIGTGAHIRCFGKGR 187 Query: 231 TIITVELPDGFMKLLAMTPIGKETF-----FINNDKQKMNATQFSIWFKAKATKAGV--- 282 T + L F +M+ A Sbjct: 188 KERTTPITRMLNATLKAWLDEPPVGNGNALFPTVHGGQMSPDAVQYLLAKYVLAASKGCL 247 Query: 283 -----NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNS 336 S H +R +A DAG + + G ++ + Y + Sbjct: 248 SLRSKRVSPHVLRHSAAMELLDAGVDSTVISLWLGHESTRSTQPYLHAHLAIKEAALAKI 307 Query: 337 RRISSVVDSDD 347 Sbjct: 308 DPFDKQSPGRF 318 >gi|14010726|ref|NP_114212.1| hypothetical protein pFKN_p22 [Pseudomonas syringae pv. maculicola str. M6] gi|13926143|gb|AAK49554.1|AF359557_19 unknown [Pseudomonas syringae pv. maculicola str. M6] Length = 320 Score = 99.8 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 40/271 (14%), Positives = 79/271 (29%), Gaps = 31/271 (11%) Query: 89 VNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRKHTP---SSAIQFLTSMRV 142 +R ++++ + G + +T H+ + +H ++ + L ++ Sbjct: 39 PRTRRAYQNDLEDFCSFVGLASADEFRVVTRSHVLAWRAQLEHRGLAGATIRRKLAALAS 98 Query: 143 LFKWAVRQEYV---AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLA 195 LF + + + R + + E G + R Sbjct: 99 LFDHLLENNAIAGGNPVHGVKRPRIESNEGKTPALGDHQAKALLEAPDETTLKGQRDRAL 158 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---------------IITVELPDG 240 LLY GLR ++ V +Q + G I L + Sbjct: 159 LAVLLYHGLRREEAALLQVSDIQERRGIQHLKVHGKGGKVRYLPLHPIAAGRIHQYLENS 218 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATIS 297 L + A A A KAG+ HG+R +AT + Sbjct: 219 EHHLAERKVPLFMPLRGKLTGAGITANGIYAVVTAYAKKAGIEVDGLGVHGLRATAATNA 278 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADR 328 + A ++ A G + + Y + +R Sbjct: 279 LEHEADIAKVQAWLGHANISTTKIYDRRENR 309 >gi|256832233|ref|YP_003160960.1| integrase family protein [Jonesia denitrificans DSM 20603] gi|256685764|gb|ACV08657.1| integrase family protein [Jonesia denitrificans DSM 20603] Length = 333 Score = 99.8 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 39/306 (12%), Positives = 79/306 (25%), Gaps = 40/306 (13%) Query: 33 IRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSR 92 R H + Y A + + TL+ L E+ + +L+ ++ Sbjct: 39 RRTSRRHAQEKLTKYNKAHSERLSVTDAQTDEYAVTITLEEL-REWLAHSLTQNLSRSTI 97 Query: 93 ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS--SAIQFLTSMRVLFKWAVRQ 150 + Q + R + P + Q + + Sbjct: 98 ARRGASARQFFAWLVERGIRHDDPSKRLTTPTPHSALPHVLTVAQVKQLLAAV------- 150 Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210 + + + + R A E SGLR ++ Sbjct: 151 -------------------ERVYLPETTDTNTELSRARTDRLRAAVELTYSSGLRIAELV 191 Query: 211 RAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFINNDKQ------- 262 V + + I+ V L ++ L + ++ Sbjct: 192 SLNVGDIDHEQRVIRVTGKGNKQRRVPLGLPALQALERWIAESRPIMQSTSEEALFLGVR 251 Query: 263 --KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 + NA Q A A ++ H +R +AT + GA + G ++ Sbjct: 252 GGRWNARQVRDELNKAALHADLDVVRPHDLRHTTATHLLEGGADLRSVQEILGHSSLRTT 311 Query: 320 ETYTKG 325 + YT Sbjct: 312 QRYTHV 317 >gi|326693538|ref|ZP_08230543.1| prophage Lp2 protein 2, integrase [Leuconostoc argentinum KCTC 3773] Length = 355 Score = 99.8 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 39/336 (11%), Positives = 98/336 (29%), Gaps = 27/336 (8%) Query: 29 HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA 88 ++ + A+ + K + + + + E+ L Sbjct: 22 GYKKKTKSGFLTKKEANNW--AIETESQKINDTLTIKDGN--VADMFIEWYHVFKEPQLE 77 Query: 89 VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP--SSAIQFLTSMRVLFKW 146 S+ + + I + +I +K + + T SS + ++ Sbjct: 78 TKSKTWYTTTHKVISDYWLNKKLSEINSKMFQELINDYGKTHVKSSVSHVKNMISSFIRY 137 Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS---- 202 AV ++Y++ + +++ + ++ + + +E ++ + Sbjct: 138 AVDEDYISKDFTRNIKSFSSVESKDKDLKFLEVDELEKLKNEIINNDAVSSRMILTAIYS 197 Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--------------ITVELPDGFMKLLAMT 248 G R S+ +I KT V++P FM++ Sbjct: 198 GARYSEVAGLTRDDFNFENNTITINKTWQAEDRAYKSTKTVSSNRVVDMPTDFMEIAKSW 257 Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHEL 307 G F + + + + K + HG+R A+ + Sbjct: 258 HYGSRFAFESTNGLPPTNNAVNKQLRRYLEKNDSKIITFHGLRHTHASYLLSRDVAIQYV 317 Query: 308 MATYGWKTVD-QAETYTKGADRIRLGIKNSRRISSV 342 G V+ YT ++ R + S+ +S + Sbjct: 318 SERLGHADVNITLSVYTHLLEKKR-SHETSKALSEL 352 >gi|293373295|ref|ZP_06619653.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|292631691|gb|EFF50311.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] Length = 383 Score = 99.8 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 49/364 (13%), Positives = 91/364 (25%), Gaps = 44/364 (12%) Query: 8 PPFVTKERTR---HGKIIYY---FRKGHGRRIRLP---------------YPHESTFIPA 46 P + R + +G Y +R G L + Sbjct: 10 PKNFVRLRNKKLANGNKSLYLDIYRDGVRSYEFLKMYLIPEKNNVTARQQNENTLQAAEV 69 Query: 47 YMSALTGSTPKREY--INSPRKKPTTLKWLISEYRKSAHWGSLAV-NSRISFESYFDQII 103 S + K + ++ K L + YR + + Sbjct: 70 IRSERQNAIVKGQAGITDASAKNKLLLMDWLKIYRAKLEKRQYKDISHVDNLMRILAGYK 129 Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPSS--AIQFLT-------------SMRVLFKWAV 148 + I + ++ KH S + L ++ K Sbjct: 130 PAT-MARLTGIDKDFAKGFIDYLKHDYVSYKGNKHLQNSTIVDYVRTFSVAINAAIKDGY 188 Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208 + + + + ++E++Q+ A+ F +SGLR SD Sbjct: 189 KIINPFKLLSSDEKVKQPDSH-REYLSQEELQKLMITPCRRDDIGKAYLFACFSGLRISD 247 Query: 209 SCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ 268 +++ EL + N Sbjct: 248 IRALRWKNIIVEDGQFFAMLFMQKTGKELKIPLPDKAMEIISIRGNDEDKVFFLPSNP-T 306 Query: 269 FSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 K A AG+NK + H R AT+ GA + + G V + Y K Sbjct: 307 VEDNLKKWAEAAGINKHLTFHTARHTYATLLLTLGADLYTVSKMLGHTNVATTQIYAKVV 366 Query: 327 DRIR 330 D+ + Sbjct: 367 DKKK 370 >gi|293572845|ref|ZP_06683798.1| DNA integration/recombination/invertion protein [Enterococcus faecium E980] gi|291607092|gb|EFF36461.1| DNA integration/recombination/invertion protein [Enterococcus faecium E980] Length = 380 Score = 99.8 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 54/379 (14%), Positives = 124/379 (32%), Gaps = 52/379 (13%) Query: 13 KERTRHGKIIYYFR------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 + + ++G+ + F+ G+ ++ + T A AL + E ++ Sbjct: 6 QYKKKNGEKAWKFQAYLGINPETGKSVKTTRRNFKTQREAK-LALARLQSEYENNLLKKE 64 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVES 125 KP T K + + ++ ++ + E F ++ + GD +IT I+ ++ Sbjct: 65 KPKTYKDVYDLWMTEYK-RTVRGSTLLKTERIFKNHVLEELGDIYISEITPIKIQKLMDK 123 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ---- 181 + +A + + ++FK+AVR + NP ++ +PKR+ + D +Q Sbjct: 124 WANKYDTAPKMMNYTGLVFKYAVRFGIIESNPTDAIRKPKRRKKTTTEEPFYDKKQLKLF 183 Query: 182 -FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----------------IFS 223 + + + F L +G+R ++ + + Sbjct: 184 LDVLYEQPNIKVQAFFRLLAMTGMRKQEAGALEWRDIDFKAKTVNIYKAVTRTANGLEID 243 Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF-----KAKAT 278 + I KLL + + NA + Sbjct: 244 TTKTVGSSRIISIDQGTLDKLLEWKEVALPPSDDWLIFGQTNAKNPHDIMSLDTSRKWLL 303 Query: 279 KAG-----------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGA 326 + HG R A++ + GA+ E+ G + + TY + Sbjct: 304 NIQDQMDKKQKKKLPRITVHGFRHTQASLLIEMGASLKEVQFRLGHEDIQTTMNTYAHVS 363 Query: 327 DRIRLGIKN-SRRISSVVD 344 +L + + + + +D Sbjct: 364 ---KLAKEQLADKFNKFID 379 >gi|168703458|ref|ZP_02735735.1| Phage integrase [Gemmata obscuriglobus UQM 2246] Length = 363 Score = 99.8 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 51/350 (14%), Positives = 100/350 (28%), Gaps = 34/350 (9%) Query: 1 MTPSLRLPPFVTKERTRHG------KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGS 54 M P + + + G K +Y R G++ ++ G Sbjct: 1 MPPKKK--GRQRRPKGTGGFFWSESKQVYIARVIVGKKP----DGSPHYVERSDPTEAGL 54 Query: 55 TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRK 113 K E + P TLK + + KS L ++ ++ D + G Sbjct: 55 VKKLEEVAPPSSG-ITLKAWLERWLKSLEGTELRQRTKDVRKTATDLYFVPTLGHIRLTD 113 Query: 114 ITTKHIRSGVESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170 +T I V+ + S+ +L ++ A + + NP L V+RP + Sbjct: 114 LTHLQITEAVKKWTATLKSASTRRTYLAALSTALNAAKYEGLITDNPILKVKRPPQPKAV 173 Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230 P+T D+ + + + +G R ++ V +I +T Sbjct: 174 FDPFTVADLNRIIADAVQRPATY-PCALYAATGCRMGEALALDVTSFDPAAGTIAITQTQ 232 Query: 231 TIITVELPDGFMKLLAMT---------------PIGKETFFINNDKQKMNATQFSIWFKA 275 P + + F ++ + + + Sbjct: 233 DARRERGPAKTSNSIRVIEVPADARPALVSAIGTRTDGPLFTTPAGRRQSKSNVRKAWIR 292 Query: 276 KATKAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + G+ H R AT AG ++ A G Y + Sbjct: 293 LLNRLGLKYRAPHKCRHTVATRMLAAGYGIPDVAAYLGDTAETVLRIYAR 342 >gi|198243118|ref|YP_002216741.1| phage integrase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197937634|gb|ACH74967.1| phage integrase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326624498|gb|EGE30843.1| phage integrase [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 341 Score = 99.8 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 45/336 (13%), Positives = 90/336 (26%), Gaps = 41/336 (12%) Query: 14 ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + +GK + Y G+R+R A+ + K+ ++ + L Sbjct: 4 RKQPNGKWLCECYPNGRDGKRVR-KQFATKGEAIAFENHTMDEVNKKPWLGEKEDRRH-L 61 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----- 126 +I ++ ++ S I GD ++T E+R Sbjct: 62 SEVIDQWHLLYGQTLADPKRLMAKRSI---ICNGLGDPIASELTAGDFTKYREARLKGEV 118 Query: 127 ---------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 P + ++ +F + + + L+ + EG + Sbjct: 119 KNEDGVLMSPVKPRTVNLEQRNLSSVFGTLKKLGHWSAPNPLAGLPTFKIAEGELAFLAP 178 Query: 178 DMQQFKSFWSEGSQ---PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234 + + SQ + + L +G R S++ L + K T Sbjct: 179 EEIKRLLDACADSQSPSLLMIAKVCLATGARWSEAENLQGHQLSKYRITYTKTKGKKNRT 238 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK----SAHGVR 290 V + + L T F+ +AG+ H +R Sbjct: 239 VPISQDLYEELPKNRGKLFTPC-------------RKAFERAVKRAGIELPEGQCTHVLR 285 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 A+ G L G + Y A Sbjct: 286 HTFASHFMMNGGNILVLRDILGHADIKMTMVYAHFA 321 >gi|86159979|ref|YP_466764.1| Phage integrase [Anaeromyxobacter dehalogenans 2CP-C] gi|85776490|gb|ABC83327.1| Phage integrase [Anaeromyxobacter dehalogenans 2CP-C] Length = 275 Score = 99.8 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 40/265 (15%), Positives = 77/265 (29%), Gaps = 21/265 (7%) Query: 101 QIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAI-N 156 + G I I + + S L ++R L AV E + Sbjct: 5 HLSPFFGKKKLIDIGPAEIEEFKAKKLAEGQSKKSINNHLAALRKLLNLAVEWEVIPRAP 64 Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216 + T ++ ++ + R L +GLR + + Sbjct: 65 KVKGFRAKTEYITEEQFLTFDEAERLVHA--AAPEWRTFIITALKTGLRVGELLALKWED 122 Query: 217 LQN-----------NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM- 264 L K G V L D + +L K T+ + Sbjct: 123 LDLVAGQLVVRRTLWHKQEGPPKGGRNRKVPLSDEAIAVLKAHRHLKGTYVFCEADGRRL 182 Query: 265 NATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 ++ + +A + K HG+R A+ G + + G ++++ Y Sbjct: 183 THSRVKDVVPSTCRRAQLAKRLTTHGLRHTFASHLVMRGVSLMAVKELLGHESIEMPLRY 242 Query: 323 TKGA-DRIRLGIKNSRRISSVVDSD 346 + + D R +K SSV + + Sbjct: 243 SHLSPDVKRDAVKLLDAPSSVANGN 267 >gi|85708193|ref|ZP_01039259.1| site-specific recombinase, phage integrase family protein [Erythrobacter sp. NAP1] gi|85689727|gb|EAQ29730.1| site-specific recombinase, phage integrase family protein [Erythrobacter sp. NAP1] Length = 412 Score = 99.8 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 51/342 (14%), Positives = 102/342 (29%), Gaps = 22/342 (6%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRK---GHGRRIRLPYPHESTFIPA-----YMSALTGST 55 S RLP F T+ G+ IY + G R + + + A + Sbjct: 37 SRRLPGFGTRF-YASGRTIYIVQAAMQGRTRTVTIGNAKILSEAQAMDVARRVLLRAQVG 95 Query: 56 PKREYINSPRKKPTTLKWLISEYRK--SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113 R+K + Y + S W + +++ + + + + Sbjct: 96 HNPAERRKKRRKVPLYADFLDTYWRKVSPSWKTSTLHTHGLYRQ--NYLQSAFAGMFLDE 153 Query: 114 ITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 I H++ P +A + +R L A K Sbjct: 154 IEQSHVQEWFNRVTEIGGPGAANRSCEILRALMNKAEEWGIKPECSNPCSSIRMNKRRKC 213 Query: 172 RPWTKEDMQQFKSFWSEGSQ-----PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226 + + + + + A + L+ +G R S+ ++ + Sbjct: 214 ERFLSDQEFRRLGAAIDKHRKSRPVHCAALQLLILTGCRRSEITGLTWSEVKGRRLLLTD 273 Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-S 285 KTG TV L + ++ P K + + + + + ++ KAG+N Sbjct: 274 SKTG-PRTVWLGEAAWTIIKCLPRHKRRPEVFFNPKTGGSVDLTCLWRDVREKAGMNGVR 332 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 H +R A+ +A T + G + V Y D Sbjct: 333 LHDLRHSFASHAAARSETLPMIGKLLGHRHVTTTARYAHLDD 374 >gi|320654613|gb|EFX22618.1| putative integrase; DLP12 prophage [Escherichia coli O55:H7 str. 3256-97 TW 07815] Length = 387 Score = 99.8 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 51/378 (13%), Positives = 112/378 (29%), Gaps = 56/378 (14%) Query: 17 RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76 R+ + G+RI+ A T + Sbjct: 6 RNEIWYASYSLPGGKRIKESL-GTKDKRQAQELHDKRKAELWRVEKLRDLPDVTFEEACL 64 Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS----- 131 + + S S +S + + + I+ I S V + + Sbjct: 65 RWLEEKADKK----SLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWK 120 Query: 132 ------------------------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167 + + L ++ + + A +++ + ++ P + Sbjct: 121 QKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILR-AAERDWKWLEKAPVIKIPAVR 179 Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFS 223 + +R KE+ ++ E + +F L +GLR S+ Q + + Sbjct: 180 NKRVRWLEKEEAKRLIDECPE--PLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVN 237 Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI------------ 271 + K+ I V L D K+L + + K A S Sbjct: 238 PEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKT 297 Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 + + +AG+ + H +R A+ +G L GW++++ Y A Sbjct: 298 SWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNH- 356 Query: 331 LGIKNSRRISSVVDSDDP 348 +++R+I + + P Sbjct: 357 -LTEHARKIDDIFGDNVP 373 >gi|319945012|ref|ZP_08019274.1| phage integrase family site-specific recombinase [Lautropia mirabilis ATCC 51599] gi|319741582|gb|EFV94007.1| phage integrase family site-specific recombinase [Lautropia mirabilis ATCC 51599] Length = 396 Score = 99.8 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 47/361 (13%), Positives = 111/361 (30%), Gaps = 34/361 (9%) Query: 9 PFVTKERTRHGKIIYYFRKG-HGRRIRLPYPHESTF---------IPAYMSALTGSTPKR 58 + E G I++ +R G+R +L A G +P + Sbjct: 24 RGLYVEVLPSGSIVWRYRYRLDGKREKLTLGKYPALTLKNARLKWDEAAHQVAMGESPAK 83 Query: 59 EYINSPR--KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKIT 115 + + TT+ + K + Y ++ I+ G R IT Sbjct: 84 KKQQEKVSGAENTTVVDFAERFFKDIQSRDRKDVTMP--RRYLEKDILPHIGSKPVRDIT 141 Query: 116 TKHIRSGVESRKHTP--SSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGI 171 + +R+ + +K ++A Q ++ +F +A+ + L + R Sbjct: 142 AEDVRNVIWRKKEQGFDAAAGQVRGLLKRMFDYALTCGLIQANPVMALPMRHVYRAAARD 201 Query: 172 RPWTKEDMQQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNN---IFSIK 225 R T ++++ F + R +AF+ +L + +R S+ A + + N Sbjct: 202 RALTPDEIKLFLRAMQTSNIRRQFKIAFQLILMTLVRKSELMLAQWKDVHVNEGEWHIPV 261 Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN------ATQFSIWFKAKATK 279 + + + L + + + K Sbjct: 262 ENSKTGKLHIVYLSTQAQTLFKELKPLASSSDWVLPGRGTLAKPFANNALNQALKVSLQG 321 Query: 280 AGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIKNS 336 + + H +R+ ++T+ + G + + Y + A++ R ++ Sbjct: 322 QEIPAFTIHDLRRTASTLLHEQGWPSDVVEKALNHTIGGVRGVYNRAEYAEQRREMLQAW 381 Query: 337 R 337 Sbjct: 382 A 382 >gi|256824962|ref|YP_003148922.1| site-specific recombinase XerD [Kytococcus sedentarius DSM 20547] gi|256688355|gb|ACV06157.1| site-specific recombinase XerD [Kytococcus sedentarius DSM 20547] Length = 336 Score = 99.8 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 40/310 (12%), Positives = 86/310 (27%), Gaps = 60/310 (19%) Query: 85 GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTP---SSAIQFLT 138 + ++ ++ + + G ++R++T +RS R S+ + Sbjct: 21 RGRSPHTVRAYTADLTALAEHLEAAGATEWRQVTLSDLRSFAARRAAAGLARSTLARGTA 80 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ----------------- 181 S R F W V E + ++P + P+ + E Q Sbjct: 81 SQRTFFGWMVATERLVVDPSARLVSPRVEKRLPAVLRAEQAAQLVEGGGTRPEPRATGGA 140 Query: 182 -----------------------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218 + + R E L +G+R + + Sbjct: 141 GDPGGDTQTDTDTDTDAAPGTEADPVSLATDLRDRAVLELLYATGIRVGELVSLDTGAVS 200 Query: 219 NNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETF----------FINNDKQKMNAT 267 +++ V ++ L F+ +++ Sbjct: 201 LQDHTVRVWGKGSKERVVPFGVPALRALEEWVHQGRPELLGARSGEALFLGVRGGRIDPR 260 Query: 268 QFSIWFKAKATKAG--VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK- 324 + A + + HG+R +AT DAGA + G ++ + YT Sbjct: 261 EVRRVVHRAAQRVEGAADIGPHGLRHSAATHMVDAGADIRSVQELLGHASLATTQVYTHV 320 Query: 325 GADRIRLGIK 334 +R+R Sbjct: 321 SVERLREAFD 330 >gi|168752738|ref|ZP_02777760.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. EC4113] gi|168757666|ref|ZP_02782673.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. EC4401] gi|168770287|ref|ZP_02795294.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. EC4486] gi|168784061|ref|ZP_02809068.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. EC4076] gi|195940083|ref|ZP_03085465.1| putative integrase [Escherichia coli O157:H7 str. EC4024] gi|208810674|ref|ZP_03252550.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. EC4206] gi|208816586|ref|ZP_03257706.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. EC4045] gi|209399988|ref|YP_002271143.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. EC4115] gi|254793679|ref|YP_003078516.1| putative integrase for prophage CP-933U [Escherichia coli O157:H7 str. TW14359] gi|188013544|gb|EDU51666.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. EC4113] gi|188998687|gb|EDU67673.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. EC4076] gi|189355394|gb|EDU73813.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. EC4401] gi|189360802|gb|EDU79221.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. EC4486] gi|208725190|gb|EDZ74897.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. EC4206] gi|208730929|gb|EDZ79618.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. EC4045] gi|209161388|gb|ACI38821.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. EC4115] gi|254593079|gb|ACT72440.1| putative integrase for prophage CP-933U [Escherichia coli O157:H7 str. TW14359] Length = 359 Score = 99.8 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 57/335 (17%), Positives = 101/335 (30%), Gaps = 40/335 (11%) Query: 6 RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65 +LPP V + + P ES + A L K E + R Sbjct: 12 KLPPKVY---------------PNKYSVWKPTSRESVTLTAIEDGLAALWKKYEETVNHR 56 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 + T L ++ SA++ L+ ++ + + +++ G + +HIR ++ Sbjct: 57 DRAMTFGRLWEKFLASAYYSELSPRTQKDYLQHQKKLLAVFGKVLADSVKPEHIRRYMDK 116 Query: 126 RK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 R + + A +SM ++ W + YV NPC V + K K KE Sbjct: 117 RGEQSKTQANHEKSSMSRVYSWGYERGYVKANPCAGVSKFKAKNRERYVTDKEYQAVLSV 176 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 +A E R SD + + N+ I+ KTG Sbjct: 177 AP---LPVFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAA 233 Query: 245 LAMTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAGV------NKSAHGVRKFSATI 296 + N + F+ + AG + + H + Sbjct: 234 IEKAKQLPTSAYVISNQYGNRYMYKGFNEMWVEARNHAGKISGILTDFTFHDL------- 286 Query: 297 SADAGATA-----HELMATYGWKTVDQAETYTKGA 326 G + + G KT Q Y + Sbjct: 287 -KAKGISDYEGSSRDKQLFSGHKTEGQVLIYDRKV 320 >gi|324115014|gb|EGC08979.1| phage integrase [Escherichia fergusonii B253] Length = 395 Score = 99.8 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 53/334 (15%), Positives = 114/334 (34%), Gaps = 16/334 (4%) Query: 11 VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPK-----REYINSPR 65 V+++ R ++ Y G R I + + E A A+ + + Sbjct: 43 VSRKEGRKKFLLRYLYHGRKRAIAIGHWPEVDVNLARQIAIEHKRSLATGTDPKQERENK 102 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 + T L ++Y S + + Y D I G IT I ++ Sbjct: 103 RMELTFDELFNQYYL-PWAKSAKRSWGKDVQRYRDHIRPAIGQRLLSDITPASILRLQQT 161 Query: 126 RKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + ++ + + ++ +F WA RQ +++P V+ + R +T++++++ Sbjct: 162 LSTSLSAATCNRVIVLIKAVFTWAGRQSMTSVHPARVVQLLRENNARQRYFTEDEIRRIF 221 Query: 184 SFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNI---FSIKTQKTGTIITVELP 238 + P A L +GLR + A +H+ + +T+ I Sbjct: 222 LSADNDTSPVAARYVKLLLLTGLRRDELRLAKWEHVDPVKRTLWLPETKNGYGRIVHLNS 281 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSAT 295 + + + KQ M + F+ +AG+ H R A Sbjct: 282 LAMDVIRTLPTQRGNPWLFIGKKQGMPLSNPVKAFQRIVRRAGIFDKEVCIHTCRHSVAA 341 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + G T +++ A G ++ ++ Y + Sbjct: 342 LIVSYGGTLYDVQAQLGHRSSQSSQRYAHLHPQR 375 >gi|239625431|ref|ZP_04668462.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239519661|gb|EEQ59527.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 278 Score = 99.8 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 39/273 (14%), Positives = 80/273 (29%), Gaps = 16/273 (5%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136 EY + N+ + G+ K G + + P+S Sbjct: 8 EYETYLRSEERSANTIAKYIRDLRAFFSFMGNEPLCK-EAVVSFKGYLTESYAPASVNSM 66 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196 L ++ +W+ + + T + T+E+ + E RL+ Sbjct: 67 LAAVNGFLEWSGMAQMKVKP---LKIQKCLFTRPEKELTQEEYWRLIKAAEEKGNDRLSM 123 Query: 197 E--FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL--PDGFMKLLAMTPIGK 252 + +G+R S+ V+ ++ + + ++ + + I Sbjct: 124 LLQTICATGIRVSEVRHITVEAVRAGQAKVDCKGKNRVVFLPKVLCRALQRYCRRYGIDI 183 Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGATAHELMA 309 F + +N T KA +AGV H +R A L Sbjct: 184 GPVFKTASGKPLNRTNIWRDMKALCKRAGVEPGKVFPHNLRHLFARTYYKLEKDLSRLAD 243 Query: 310 TYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342 G +V YT + R + R++ + Sbjct: 244 LLGHSSVTTTRIYTMESGR-----SHIRQLERI 271 >gi|258508081|ref|YP_003170832.1| phage-related integrase [Lactobacillus rhamnosus GG] gi|257148008|emb|CAR86981.1| Phage-related integrase [Lactobacillus rhamnosus GG] gi|259649403|dbj|BAI41565.1| phage integrase [Lactobacillus rhamnosus GG] Length = 394 Score = 99.8 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 50/379 (13%), Positives = 107/379 (28%), Gaps = 60/379 (15%) Query: 11 VTKERTRHGKIIYYFRK------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64 ++ + + GK + F G+ I++ T A A + + Sbjct: 4 ISSYKLKDGKKAWEFYIFAGVDPQTGKEIKIHRRGFPTEKIAQQEATLAESEIIRGHSHY 63 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGV 123 + + + ++++ ++ S I + II K GD K T K + + Sbjct: 64 QTERILMADYLNQWITKLKV-NVKEGSMIIYRYNLKKYIIPKIGDIRLAKYTLKEHQEFI 122 Query: 124 ESRKHTPSSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 S + S ++ K AV Y+ NP + VE + + Sbjct: 123 SSLFNDGLSLNTVKLINGTLHNALKKAVAIGYITKNPTVGVEFSAYAKDNSKKLHFWTKD 182 Query: 181 QFKSFWSEGSQPRLAFEFLLY-----SGLRCSDSCRAGVQHLQNNIFS------------ 223 Q SF + + + GLR ++ + N + Sbjct: 183 QVGSFIEAAEEDKEPMWLSFFVTLIDCGLRVGEAMALRWSDIDFNKNTLSVNATRIYRAE 242 Query: 224 ----------IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK------------ 261 + + + T + LL + Sbjct: 243 TGSNAGKIALDRPKTLSSKRTEYMTARVNDLLQQQYERHFSHGNVQGFRFSTSHNNDFVF 302 Query: 262 ---------QKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATY 311 Q + + + F +AG+ H +R A + +AG + ++ Sbjct: 303 TYSSDAKFGQPLRSRATTGAFNRITNRAGLPHIRIHDLRHTHAVLMREAGLSLDDIKDDL 362 Query: 312 GWKTVDQAETYTKGADRIR 330 G K + + Y + + + Sbjct: 363 GHKDISTTQIYAEISPAKK 381 >gi|257068193|ref|YP_003154448.1| site-specific recombinase XerD [Brachybacterium faecium DSM 4810] gi|256559011|gb|ACU84858.1| site-specific recombinase XerD [Brachybacterium faecium DSM 4810] Length = 332 Score = 99.8 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 35/320 (10%), Positives = 86/320 (26%), Gaps = 54/320 (16%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRK 127 ++ + H + ++ ++ ++ ++ +RS + +R Sbjct: 10 DAVLDAFADHLHLERGRSEHTVRAYRREAAGLLAHLRTVERITLPELDVTALRSWLSARA 69 Query: 128 HTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK- 183 T +SA + S+R W + + + P+R T + + Sbjct: 70 ETGASASTLARSAASVRTFTTWLASTGRIPHDVGGRLRAPRRGRHLPTVLTGDQAGELLD 129 Query: 184 --------------------SFWSEGSQPRLAFEFL-------LYSGLRCSDSCRAGVQH 216 + + R SGLR S+ Sbjct: 130 GLDGSARDDSAAPPREIAAAPRAEQDPRDRAVLLRDAAVLELLYSSGLRVSELVALDRSR 189 Query: 217 LQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA--------- 266 + +++ + V + ++ L + Sbjct: 190 IDRQHGTVRVRGKGDRERIVPVGLPALEALQRWESEGRPVLLAAATPGTPPGDALFLGVR 249 Query: 267 ------TQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 +AG+ + + H +R +AT + GA + G ++ Sbjct: 250 GGRLGDRAVRTLVDRHVAEAGISRHVTPHTLRHSAATHLVEGGADLRSVQDFLGHSSLAT 309 Query: 319 AETYTK-GADRIRLGIKNSR 337 + YT A+R+R + + Sbjct: 310 TQIYTHVSAERLRRTVDQAH 329 >gi|191638064|ref|YP_001987230.1| Integrase [Lactobacillus casei BL23] gi|4586564|dbj|BAA76437.1| integrase [Lactobacillus phage phiFSW] gi|190712366|emb|CAQ66372.1| Integrase [Lactobacillus casei BL23] gi|327385292|gb|AEA56766.1| Integrase family protein [Lactobacillus casei BD-II] Length = 394 Score = 99.8 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 49/379 (12%), Positives = 107/379 (28%), Gaps = 60/379 (15%) Query: 11 VTKERTRHGKIIYYFRK------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64 ++ + + GK + F G+ I++ T A A + + Sbjct: 4 ISSYKLKDGKKAWEFYIFAGVDPQTGKEIKIHRRGFPTEKIAQQEATLAEAEIIKGHSHY 63 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGV 123 + + + ++++ ++ S I + II K GD K T K + + Sbjct: 64 QTERILMADYLNQWITKLKV-NVKEGSMIIYRYNLKKYIIPKIGDIRLAKYTLKEHQEFI 122 Query: 124 ESRKHTPSSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 S + S ++ K AV Y+ NP + VE + + Sbjct: 123 SSLFNDGLSLNTVKLINGTLHNALKKAVAIGYITKNPTVGVEFSAYAKDNSKKLHFWTKD 182 Query: 181 QFKSFWSEGSQPRLAFEFLLY-----SGLRCSDSCRAGVQHLQNNIFS------------ 223 Q SF + + + GLR ++ + + + Sbjct: 183 QVGSFIEAAEEDKEPMWLSFFVTLIDCGLRVGEAMALRWSDIDFSKNTLSVNATRIYRAE 242 Query: 224 ----------IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK------------ 261 + + + T + LL + Sbjct: 243 TGSNAGKIALDRPKTLSSKRTEYMTARVNDLLQQQYERHFSHGNVQGFRFSTSHNNDFVF 302 Query: 262 ---------QKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATY 311 Q + + + F +AG+ H +R A + +AG + ++ Sbjct: 303 TYSSDAKFGQPLRSRATTGAFNRITNRAGLPHIRIHDLRHTHAVLMREAGLSLDDIKDDL 362 Query: 312 GWKTVDQAETYTKGADRIR 330 G K + + Y + + + Sbjct: 363 GHKDISTTQIYAEISPAKK 381 >gi|310827610|ref|YP_003959967.1| hypothetical protein ELI_2021 [Eubacterium limosum KIST612] gi|308739344|gb|ADO37004.1| hypothetical protein ELI_2021 [Eubacterium limosum KIST612] Length = 338 Score = 99.8 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 37/316 (11%), Positives = 99/316 (31%), Gaps = 38/316 (12%) Query: 66 KKPTTLKWLISEYRKSAHWGSL-AVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGV 123 K+ TL+ E+ + ++ +++ ++ ++ + GD IT + ++ V Sbjct: 18 KRSVTLEAFSREWIRKRGDEGKIKESTLTNYQRIIERYLLPELGDLRLDTITVEVVQDFV 77 Query: 124 ESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 ++ + S+ + + + + AV + NPC + K+ + Q Sbjct: 78 KTLERRALNTSTIRGIIGRLSSIMEKAVEAGLINKNPCGHIVIQKKWQTTTGKILTIEDQ 137 Query: 181 QFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 + + W + L A + L++G+R S+ + + I+ ++ + Sbjct: 138 KALTHWLLAHEHNLSLAVQLGLFAGMRISEIAALQWKDIDLKNGFIQVRRNVQRVKNHDA 197 Query: 239 DGFMKLLAMTPIGKETFFINNDKQ----------------------------KMNATQFS 270 + + F + + Sbjct: 198 GQRKTINQIGTPKSPKAFRSIPITSILMKSLKGYEKSTVKPEAFVIAKKGGSAYDVRTIQ 257 Query: 271 IWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGAD- 327 +FK + ++ H +R AT + ++G + G Y D Sbjct: 258 RYFKKIISVLKLDNYRFHDLRHTFATRAKESGMDIQIISEILGHSETAVTMNIYLHITDL 317 Query: 328 RIRLGIKNSRRISSVV 343 + + +++S + Sbjct: 318 HKKQEMVLLDKLNSTI 333 >gi|296444671|ref|ZP_06886635.1| integrase family protein [Methylosinus trichosporium OB3b] gi|296257939|gb|EFH05002.1| integrase family protein [Methylosinus trichosporium OB3b] Length = 429 Score = 99.8 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 55/377 (14%), Positives = 102/377 (27%), Gaps = 53/377 (14%) Query: 12 TKERTRHGKIIYYFRKGHGRRIRLPYPHESTF----------IPAYMSALTGSTPKREYI 61 + + G I FR G++ + + Sbjct: 38 YRRGAKGGTWIARFRDDAGKQHYEALGAADDAVDADGASILDWAQAQAKARAWFSRIANG 97 Query: 62 NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121 + ++ + +Y + + +I GD D K+TTK IR Sbjct: 98 GEQQGGVYSVGNALDDYFADRERRG-SKGLAKDKAAGNLRIRPDLGDVDLSKLTTKKIRD 156 Query: 122 GVESRKHTPS-----------------------------SAIQFLTSMRVLFKWAVRQEY 152 + P +A + LT ++ +A + Sbjct: 157 WHSALASAPRLARAGRSAEPRKETAIDTGDHDEVRARRATANRTLTVLKAALNFAFHEGR 216 Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212 A + +P ++ + D + + + + R L +G R + R Sbjct: 217 AATDDAWRKVKPFKEVDAAVVRFLSDDECRRVVNACAGEFRHIVRGALLTGCRYGELTRM 276 Query: 213 GVQHLQNN--IFSIKTQKTGTIITVELPDGFMKL---LAMTPIGKETFFINNDKQKMNAT 267 V + +++ K G V L D L L G F +D + Sbjct: 277 IVADYTPESGMIAVRLSKAGKPRHVALNDEGRALFDELTSGKPGDGLIFTRDDGGAWGDS 336 Query: 268 QFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324 +A +A + + H +R A+ A G + A G E Y Sbjct: 337 HQQRPLEAACARANIEPAATFHVLRHTYASALAMRGVPMGVIAAQLGHADTRITEKHYAH 396 Query: 325 -----GADRIRLGIKNS 336 AD IR + Sbjct: 397 LAPSYVADTIRAALPAL 413 >gi|221195298|ref|ZP_03568354.1| DNA integration/recombination/invertion protein [Atopobium rimae ATCC 49626] gi|221185201|gb|EEE17592.1| DNA integration/recombination/invertion protein [Atopobium rimae ATCC 49626] Length = 401 Score = 99.8 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 49/369 (13%), Positives = 96/369 (26%), Gaps = 57/369 (15%) Query: 14 ERTRHGKIIYYFRKGH---GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 +R G G G+ I+ + A+ + K T Sbjct: 8 KRNAKGIWCCRLYLGRDFSGKLIQPYTSFSAATTEEEAQAMA-ELWAAHLTADGKVKSTN 66 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR--- 126 L L+ EY + + N+ ++S+ I++ + + + Sbjct: 67 LVQLLCEYTELKRRNGASPNTIRQYQSFVKNHILKYLPRATVDTLVPADFTAFEQQLLKP 126 Query: 127 ------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + ++ I +R + + V +INP +V +P ++ + Sbjct: 127 REDGGAGLSRNTVINVHQFLRSAYNYFVASGICSINPLFNVAKPSQERHEAVSMEEWGFA 186 Query: 181 QFKSF-------------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT- 226 + +S + A L +G+RC + C Q + + I Sbjct: 187 EIDKAITGVLDKSFTAQEYSFETVYAFAAWLALKTGMRCGEVCALRRQDVNHMQRYIHVS 246 Query: 227 ----------------QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ-------- 262 K V + D + L+ + K Sbjct: 247 GTVIEEPRRQPYRRDVTKGRRHRNVSITDADLALIDRYSQLQGKRMGVAIKGATPLVSVT 306 Query: 263 --KMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 M T+ S F A + + H +R A+ G L G Sbjct: 307 GAFMRPTKVSSAFTALRRSLELPAGITFHTLRHTHASWCLANGVDLKTLSERLGHADEAT 366 Query: 319 A-ETYTKGA 326 Y Sbjct: 367 TLRIYAHVL 375 >gi|170293805|gb|ACB12942.1| putative site specific tyrosine recombinase [Thauera sp. E7] Length = 282 Score = 99.8 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 35/268 (13%), Positives = 85/268 (31%), Gaps = 21/268 (7%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHT 129 L + + LA ++ ++ S Q+ ++ H+++ + R Sbjct: 4 LRQQMIDAMVLRGLARRTQQAYLSVVAQLAAHY-HCSPDRLDGAHVKAWLLHRITERHLA 62 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 ++ Q + +++ F + + +++ ++E++ + + Sbjct: 63 YTTVNQAVCALKFFFDIVLGR----TAEAITIPYAHTPQRQPEILSREELAR-LFEAAAN 117 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----NNIFSIKTQKTGTIITVELPDGFMKLL 245 + R +GLR S+ C V + + K G L ++ L Sbjct: 118 LRARTLLMTAYAAGLRVSEVCALRVADIDSAPDRMCIRVVAGKGGKDRYTLLSPSLLEAL 177 Query: 246 AMTPIGKETFFINNDK-----QKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISA 298 + + + Q + + + +AG+ K+ H +R AT Sbjct: 178 RVYWRICKPRVWLFPRATDAAQPYDISSAQRAYYRARDRAGITKTGGIHTLRHAFATHLL 237 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGA 326 +AG L G + + Y A Sbjct: 238 EAGVDLATLAKLLGHGHLSTTQRYLHLA 265 >gi|194466593|ref|ZP_03072580.1| integrase family protein [Lactobacillus reuteri 100-23] gi|194453629|gb|EDX42526.1| integrase family protein [Lactobacillus reuteri 100-23] Length = 370 Score = 99.8 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 56/363 (15%), Positives = 116/363 (31%), Gaps = 45/363 (12%) Query: 11 VTKERTRHGKIIYYFRKGH---GRRIRLPYPHES---TFIPAYMSALTGST--PKREYIN 62 + E T+ G+I + + G+ ++ + T AL R + Sbjct: 1 MWAETTKDGRIKFREQYKDPLTGKYKKVSVTFDKNTNTTRRKAQIALESKIQHKLRHVDD 60 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRS 121 KK TL LI E+ + ++ I+ +S I G D I + + Sbjct: 61 GTIKKGVTLGELIDEWLPIYKTM-VKEHTYINNKSRATIIRNTLGEDVLVANIKPVLLSN 119 Query: 122 GVESR----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR-----KTEGIR 172 ++ + SS +F ++ L ++A + Y+ NP + + + Sbjct: 120 YLDDLIYKKNYKNSSVQKFKGTLGNLLRYAKKHNYIKTNPIKEADVNYKKSSAADKIEEK 179 Query: 173 PWTKEDMQQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK------ 225 + +E++ + + + S EFL +GLR ++ + Sbjct: 180 YFDEEELNKILKYMYKRSPHYGRFCEFLYQTGLRFGEAAALIPNDIIEKDGKQVAVINST 239 Query: 226 ---------TQKTGTIITVELPDGFMKLLAMTPIGKETFFINN----DKQKMNATQFSIW 272 + + V LP ++++ MN T + W Sbjct: 240 LVNKKKQPSPKTAKSNRDVTLPKRALEIIHDEEKEANGTQFIFSSGRYGYPMNNTTLNDW 299 Query: 273 FKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TY---TKGA 326 + + + K + H R + A+ G + + G K + Y TK A Sbjct: 300 LREAKKELNIQKITTVHTFRHTHISKLAELGVPLYLIQNRVGHKDATTTKDIYLHVTKKA 359 Query: 327 DRI 329 ++ Sbjct: 360 EQQ 362 >gi|52141019|ref|YP_085810.1| integrase/recombinase [Bacillus cereus E33L] gi|51974488|gb|AAU16038.1| integrase/recombinase [Bacillus cereus E33L] Length = 322 Score = 99.8 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 32/300 (10%), Positives = 82/300 (27%), Gaps = 24/300 (8%) Query: 58 REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117 + + K T+K +S + L + +E + + +G +++T + Sbjct: 19 DRKLERKQVKGLTIKKALSTVIRQMRATGLRDRTISDYELHIGHFMSVTGAEFLQELTVE 78 Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 HI + S + + + L ++ ++ IN S++ +E Sbjct: 79 HIYLWLSSMNVSNQTKLTRLKCLKAFLGRCFDNGWIEINFWKSIKIKVDSPVKEGATDRE 138 Query: 178 DM---QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ----KTG 230 + + + +G+R + +H+ ++ K Sbjct: 139 INLLLSILDLTRFIELRDAASVLLMYQTGIRVGTLSQLEHKHVNLENKVLRIDGGIIKNH 198 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQK---------------MNATQFSIWFKA 275 I + D ++L + + + Sbjct: 199 ESIHLPFDDVLARVLGALMKQNDIIRKECHIKNDYLFITKNGGRIATSPTNNNITKRLSK 258 Query: 276 KATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334 + G+ + H +R+ A GA + G + Y D+ + Sbjct: 259 HSKDYGLKNINPHALRRGFAKNLLKKGANIALISKALGHSDLAVTTRYLH-LDKEEVAES 317 >gi|241992601|gb|ACS73655.1| IntI1 [uncultured bacterium] Length = 315 Score = 99.8 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 35/302 (11%), Positives = 84/302 (27%), Gaps = 52/302 (17%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132 ++ + R+ + ++ + ++ + IR G + + + + + + S Sbjct: 16 VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 ++ L + + + + RP+ T +++ + + Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230 RL + L +G+R S+ + V+ L + +I ++ Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDRGTIIVREGKGSKDRALMLPESLAPSLREQLS 193 Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265 + + A + + M Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253 Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 F FK +AG+ K + H +R AT +G + G V YT Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVPTTMIYT 313 Query: 324 KG 325 Sbjct: 314 HV 315 >gi|145298598|ref|YP_001141439.1| phage integrase [Aeromonas salmonicida subsp. salmonicida A449] gi|142851370|gb|ABO89691.1| phage integrase [Aeromonas salmonicida subsp. salmonicida A449] Length = 351 Score = 99.8 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 36/321 (11%), Positives = 81/321 (25%), Gaps = 36/321 (11%) Query: 28 GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN---SPRKKPTTLKWLISEYRKSAHW 84 + R+R A+ + + ++ P L L+ + Sbjct: 26 PNAPRVR-KQFATKGEALAFERFVLDPDKGKPWLEGQGEPTDGRH-LSDLVELWF---GR 80 Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----------------KH 128 ++ + +S + GD + + + E+R Sbjct: 81 HGQSLRDGEARKSKLLTVCNSLGDPLAVNFSARDFAAYREARLSGDISDRRAINQKKQGV 140 Query: 129 TPSSAIQFLTSMRVLFKWAVR---QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 TP++ + +R +F R + L + + Sbjct: 141 TPNTVNREHAYLRAVFNELKRLGEWQGENPLDGLRAYKVAESELAFLYLDELKSLLAACV 200 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 S + + + L +G R S+ + N + K+ +V + L Sbjct: 201 ESPNTDLLMVVKLCLATGARWSEVEELTQSQVSPNRVTFTRTKSKKSRSVPISPELYVQL 260 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAH 305 + F + + + ++ H +R A+ G Sbjct: 261 PRKRGRLFSDC---------YRAFEMVVERAGLELPPGQNTHVLRHTFASHFMMNGGNIL 311 Query: 306 ELMATYGWKTVDQAETYTKGA 326 L G T+ Y A Sbjct: 312 VLQKILGHSTIAMTMRYAHFA 332 >gi|299821514|ref|ZP_07053402.1| bacteriophage integrase [Listeria grayi DSM 20601] gi|299817179|gb|EFI84415.1| bacteriophage integrase [Listeria grayi DSM 20601] Length = 390 Score = 99.8 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 52/388 (13%), Positives = 109/388 (28%), Gaps = 55/388 (14%) Query: 14 ERTRHGKIIYY--FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 R R+GK Y +R +I+ + + A K ++ + Sbjct: 4 YRKRNGKWEYRIKYRDPATGKIKEKMKSGFSRKSDCVEAAAEMEKKIKHGHFNNDASVMF 63 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 ++ K + ++ E + ++ + G +IT+ + + S + Sbjct: 64 HEYALKWLKDYASNN-KPSTVRPREIEYRRLAKHFGYAKINQITSIQYQDYLNSLNEKYA 122 Query: 132 S--AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + ++ R++FK A + + +P L + PK+ + ++ K F E Sbjct: 123 TNTISGTHSTARMIFKRAYQDNLIDRDPTLYAKLPKKIETAQSIQDSINNRRVKIFSREE 182 Query: 190 SQPRLAFEFL-------------LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 L + +G+R + C L + T TI Sbjct: 183 ISLFLHNAKTQGLSNDFEIFSLLVNTGMRVGELCALQENALLKKENGYYIRITQTIYNPT 242 Query: 237 LPDGFMKLLAMTPI---------------------------------GKETFFINNDKQK 263 +LL K F + Sbjct: 243 NKMDKYQLLPPKTKGSIRDIEISYYIYELIRKQIIKQKELYIALGGAMKRFIFSKDFGYP 302 Query: 264 MNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-E 320 Q + + + S H R A+I + G + G T + E Sbjct: 303 ETPKQIANRMRRILKLCDLPSYYSPHNFRHSYASILEEEGVPTLYIQKQLGHSTFETTKE 362 Query: 321 TYTKGADR-IRLGIKNSRRISSVVDSDD 347 TY ++ + + I+ + S+ Sbjct: 363 TYIHLTEKTQKEASEKVLNIAESLSSER 390 >gi|116872612|ref|YP_849393.1| phage integrase family protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|116741490|emb|CAK20614.1| phage integrase family protein [Listeria welshimeri serovar 6b str. SLCC5334] Length = 377 Score = 99.8 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 46/363 (12%), Positives = 102/363 (28%), Gaps = 37/363 (10%) Query: 18 HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77 +GK + + I + K + L Sbjct: 15 NGKYTTRINVK-VKGVWKTQRVTKDTIEEVEYKVAKLNKKSKDGTLTLNSSLKLFDFCDI 73 Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQ 135 Y K+ L+ ++ S+E+ F ++ G+ KI + + S+ Sbjct: 74 YIKTYVEKILSDSTLNSYENAFRELKDYFGNIKLDKIEPLEYQLFINHLGKELAYSTVET 133 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQFKSFWSEGSQP-- 192 + ++ A+ YV NP V+ + ++ + ++D E S Sbjct: 134 RHKKITAMYNKAIMLNYVKSNPTSGVKIAGQDVAAMKLQYLEDDQVAHLKKLVEDSMSVS 193 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--------------TIITVELP 238 R + +G+R + + I + + T+ + Sbjct: 194 RAVIFLAIQTGMRFGEIIALTWNSINFERQRIVVKNSWDYKKKKTFVPTKTEERRTIFID 253 Query: 239 DGFMKLLAMTPIGKETF-------------FINNDKQKMNATQFSIWFKAK-ATKAGVNK 284 D + L + + F D Q ++ + K + Sbjct: 254 DSTVDYLKKYKKWSKEYISNENITNDLSLVFCTRDNQPIDNQSCNKMLKKLFMNISNEYV 313 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVV 343 + H +R +AG + G + YT + ++R + RIS+ Sbjct: 314 TLHKLRHTHTVQCLEAGLDIIYVSERLGHADISTTMEYYTHVSKKLRNMNE--DRISNYF 371 Query: 344 DSD 346 + + Sbjct: 372 NKE 374 >gi|227891999|ref|ZP_04009804.1| phage integrase [Lactobacillus salivarius ATCC 11741] gi|227866203|gb|EEJ73624.1| phage integrase [Lactobacillus salivarius ATCC 11741] Length = 370 Score = 99.8 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 47/353 (13%), Positives = 103/353 (29%), Gaps = 43/353 (12%) Query: 11 VTKERTRHGKIIYYFRK------GHGRRI-RLPYPHESTFIPAYM----SALTGSTPKRE 59 + + G +Y FR G + + R + ++ AY +A G + Sbjct: 4 IKAYTNKKGDKLYKFRIYVGFVDGKSKYVNRAGFKTKTEVKKAYQEVKFAAYQGEYRQES 63 Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119 ++ + T L + + + + + + + + IT Sbjct: 64 NLDVSLR---TFGDLYDFWFEQYKNTVRGSSYYVIKKGLDKNVYPYLKNKQLKNITLIDC 120 Query: 120 RSGVESRKHTPSSAIQFLTSM--RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 ++ T + + S+ + + ++AV + + NP +V +P+ K Sbjct: 121 QNLFNKLLKT-NPGNYVILSIYTKKILQYAVTLKLIPENPMNNVIKPREKKTYGSNNYYS 179 Query: 178 D---MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--------------- 219 E + F L YSG+R + V + Sbjct: 180 KEELKTFLAYSKKEKFHVYVLFRLLAYSGMRIGELLALKVADIDFNTSQISITKTISSDA 239 Query: 220 ------NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273 + T + + + L+ F + + ++W Sbjct: 240 DSRFELHKPKTTTGNRIISVDPDTINLVSTLIKDKKKDDFIFRFYGCSKPYSPRTVALWK 299 Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 KA + K S HG R ++ ++G ++ G V+ YT Sbjct: 300 NKIIKKANLRKISLHGFRHTYTSLLFESGVNIKKIQKQLGHSKVEMTLNVYTH 352 >gi|28198670|ref|NP_778984.1| phage-related integrase [Xylella fastidiosa Temecula1] gi|182681361|ref|YP_001829521.1| integrase family protein [Xylella fastidiosa M23] gi|28056761|gb|AAO28633.1| phage-related integrase [Xylella fastidiosa Temecula1] gi|182631471|gb|ACB92247.1| integrase family protein [Xylella fastidiosa M23] gi|307579807|gb|ADN63776.1| integrase family protein [Xylella fastidiosa subsp. fastidiosa GB514] Length = 339 Score = 99.8 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 52/329 (15%), Positives = 100/329 (30%), Gaps = 23/329 (6%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 P + G + YY+ G R P + + L + Sbjct: 12 PRFRVRPQKSGVVYYYYDHGGKPRKETPLGRDYGLAIKRWAELEHAQITPAI-------A 64 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR 126 T + + YR A N++ +++ D + I +IR ++ R Sbjct: 65 VTFRHVAERYRAEVTPTK-AYNTQRVEHRCLAPLLKFFDDPPAPFEAIKPVNIRQYLDWR 123 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + A + ++ L+ W + + +R R +D + Sbjct: 124 -TSKVIANREVSVFSHLWNW--ARSKGITDLPNPCGGIRRNKATGRDVYVDDTTYRAVYQ 180 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246 + R A + +G R SD +H+ N I KTG + + + L+ Sbjct: 181 AADQTLRDAMDLAYLTGQRVSDVVSMDERHIVNGALEICQAKTGVKLAIAITGELAVLIK 240 Query: 247 MTPIGKETFFINNDKQKMNATQFS-------IWFKAKATKAGVNK---SAHGVRKFSATI 296 K + + + ++ F+ AG+ K +R +AT Sbjct: 241 RIFDRKRGMKLRSTRLIVDEKGLGLNWKKLAYRFRKVRAAAGIAKEVFQFRDLRAKAATD 300 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKG 325 AD + A G +V E Y + Sbjct: 301 KADLAGDIRQAQAQLGHASVTMTEHYVRK 329 >gi|323946286|gb|EGB42318.1| phage integrase [Escherichia coli H120] Length = 335 Score = 99.8 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 47/323 (14%), Positives = 88/323 (27%), Gaps = 45/323 (13%) Query: 28 GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87 +G+R+R A+ S K+ ++ + L LI + SL Sbjct: 9 RNGKRVR-KQFATKGEAIAFESFTMEEVNKKPWLGEKEDRRH-LSELIELWY------SL 60 Query: 88 AVNSRISFESY---FDQIIRKSGDFDYRKITTKHIRSGVESR--------------KHTP 130 + + I GD ++T E+R P Sbjct: 61 YGQTLADPKRLMAKLRIICNGLGDPIASELTAGEFTKYREARLKGEVRNEDGTLMSPVKP 120 Query: 131 SSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + ++ +F + + A NP + K + T E++++ ++ Sbjct: 121 RTVNLEQRNLSSVFGTLKKLGHWSAPNPLAGLPTFKIAEGELAFLTPEEIKRLLDACADS 180 Query: 190 SQPRLAFE--FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247 P L L +G R S++ + + K TV + + L Sbjct: 181 QSPSLLMIAKICLATGARWSEAENLQSHQVSKYRITYTKTKGKKNRTVPISKDLYEELPK 240 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK----SAHGVRKFSATISADAGAT 303 T F+ +AG+ H +R A+ G Sbjct: 241 NRGKLFTPC-------------RKAFERAVKRAGIELPEGQCTHVLRHTFASHFMMNGGN 287 Query: 304 AHELMATYGWKTVDQAETYTKGA 326 L G + Y A Sbjct: 288 ILVLRDILGHVDIKMTMIYAHFA 310 >gi|303239571|ref|ZP_07326097.1| integrase family protein [Acetivibrio cellulolyticus CD2] gi|302592949|gb|EFL62671.1| integrase family protein [Acetivibrio cellulolyticus CD2] Length = 417 Score = 99.8 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 46/408 (11%), Positives = 100/408 (24%), Gaps = 71/408 (17%) Query: 1 MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRL---PYPHESTFIPAYMSALTGSTPK 57 M + + +G Y K +R + P T + Sbjct: 1 MASIEKRGNNSYRITVTNGTD--YTGKKDKKRKSITLDPGMTPKQIEKELQRQATLFEDE 58 Query: 58 REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITT 116 + T K I + L ++ + +II G +I Sbjct: 59 VKNGTYLDTGKITFKEFIDRWVIDYAEKQLEPKKLHCYKIMLNNRIIPTLGHLKLDRIQP 118 Query: 117 KHIRSGVESRKH------------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164 H+ + + + ++ + + + A++ + + NP V+ P Sbjct: 119 NHLIEFYNNLAEPGIRQDGKGDTLSEPTIQKYHRIISSILQDAMQWQLIISNPASRVKPP 178 Query: 165 KRKTEGIRPWTKEDMQQFKSF-WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223 K + + + +E SE + ++ +GLR + +++ Sbjct: 179 KVRKKEAGTFDEEKTALLLETLESEQLKYKVLVLLGTVTGLRRGELVALKWENVDLKNCI 238 Query: 224 IKTQKTGTI-----------------ITVELPDGFMKLLAMT--------------PIGK 252 I + + + +P LL G Sbjct: 239 IDVRYSAQYVPGKGVSIKEPKTKSSLRKIAIPSSVKDLLKSYKQFQSQERLESGDQWKGD 298 Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-------------------AHGVRKFS 293 + F + + M+ + WFK H +R + Sbjct: 299 DWVFTQLNGEIMHPDTPTKWFKKFLEDYNEKVHSDKNIPKNQKEKYLLPVIKFHCLRHTA 358 Query: 294 ATISADAGATAHELMATYGWKTVDQAE-TYTKGADRI-RLGIKNSRRI 339 AT+ G + + G Y + I Sbjct: 359 ATLLIHKGLNVRAVSSRLGHANTSTTMNIYAHALQTADKQATDMMESI 406 >gi|255308336|ref|ZP_05352507.1| phage integrase [Clostridium difficile ATCC 43255] Length = 372 Score = 99.8 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 48/365 (13%), Positives = 104/365 (28%), Gaps = 39/365 (10%) Query: 15 RTRHGKIIYYFRK--GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 R R GK Y +I+ L TTL Sbjct: 9 RKRGGKFYVYVEYIEETTGKIKQKSYGSYEKKKDAEKHLIEIKSTINNNKFITPSKTTLV 68 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR--KHT 129 +Y S + + ++ +S+ I D + ++ ++ Sbjct: 69 ERCYKYIMSNE-KKWSPYTTVNRKSWVKNYIEPFFKDTILIDVNPSLLQIFIDKNFDGSA 127 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 PS+A + + K A R + ++ NPC V+ P + + + Sbjct: 128 PSTAKVRYNFLSSVLKEAYRLKEISENPCDFVKLPAQNVTYEIEIYNREETLLLIEKLKD 187 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----------------GTII 233 S + +L GLR + + + I + + Sbjct: 188 SLIEIPILLMLLLGLRIGEVAGLRWSDVDLDNSIININQILIYANSKITFKEPKTAKSKR 247 Query: 234 TVELPDGFMKLLAMTPIGKETF-------------FINNDKQKMNATQFSIWFKAKATKA 280 T+ +P ++ L + + + +N + + T S F + Sbjct: 248 TLSVPKELIEKLKIEKLKQNKIKLQGTLENENNLVCLNTNLKPWIPTALSKTFHNFIKRN 307 Query: 281 GV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRR 338 + N H +R +A++ G + G + Y+ + + + S Sbjct: 308 NLRNIRVHDLRHTNASLLLLGGTNMKVVSERLGHTDIKITMNRYSHVLEE--MDKEASDN 365 Query: 339 ISSVV 343 +S ++ Sbjct: 366 LSKLL 370 >gi|322412565|gb|EFY03473.1| DNA integration/recombination/inversion protein [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 355 Score = 99.8 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 35/350 (10%), Positives = 92/350 (26%), Gaps = 27/350 (7%) Query: 12 TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 ++ + +R G++ T A ++A T+ Sbjct: 4 YRKLGSGWEYRITYRDSQGKKREKSKRGFKTKTLAKVAAQQAEIDLNTLTADLLD--ITV 61 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 + + + ++ F I G + IT + + + Sbjct: 62 LDYNKRWADIYKKPHITAKTWQTYTKNFKHIEHYFGTRKLKSITHTFYQQVLNDFGTKVA 121 Query: 132 --SAIQFLTSMRVLFKWAVRQEYVAINPCLS-----VERPKRKTEGIRPWTKEDMQQFKS 184 + +F ++ K A+R + N + K ++E ++ + Sbjct: 122 QQTLDKFHYQIKGACKMAIRDGIIRDNFADGAIVRSQKPAKEESEKFMEESEYLTFIKVA 181 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN---------------IFSIKTQKT 229 L + +GLR ++ + + T+ Sbjct: 182 KSKVKYPSYLTTYIIAVTGLRFAEVQGLTWKDIDFENGYIDINKTFDYSISQNFGPTKNE 241 Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGV 289 +I V + +++L + + K G N + H + Sbjct: 242 QSIRKVPIDKNSLEILRNFKSDYYQDNKLGRVCFGASNNATN--KVIKRVTGRNLTNHSL 299 Query: 290 RKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGIKNSRR 338 R A+ G + G + ++ + Y + ++ + + Sbjct: 300 RHTYASYLIAQGVDLISVSKLLGHENLNITLKVYAHQIESLKEKNDHLVK 349 >gi|167621618|ref|YP_001672126.1| integrase family protein [Caulobacter sp. K31] gi|167645971|ref|YP_001683634.1| integrase family protein [Caulobacter sp. K31] gi|167646190|ref|YP_001683853.1| integrase family protein [Caulobacter sp. K31] gi|167348401|gb|ABZ71136.1| integrase family protein [Caulobacter sp. K31] gi|167348620|gb|ABZ71355.1| integrase family protein [Caulobacter sp. K31] gi|167351741|gb|ABZ74467.1| integrase family protein [Caulobacter sp. K31] Length = 330 Score = 99.8 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 39/305 (12%), Positives = 82/305 (26%), Gaps = 37/305 (12%) Query: 71 LKWLISEYRKSA--HWGSLAVNSRISFESYFDQIIRKSG--------DFDYRKITTKHIR 120 L LI + + ++ + F ++R +G I + Sbjct: 6 LPALIQRFFTDRLCVQMEASPHTVAGYRDTFRLLLRYAGARCGKPPVKLTVEDIDADLVA 65 Query: 121 SGVES----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + R ++ S L ++R F++ + + C + K R T Sbjct: 66 DFLAHTETARGNSARSRNTRLAAIRSFFRYVAMSDPTWLLQCQRILAMPNKRYVKRTVTF 125 Query: 177 EDMQQF-------KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ 227 D + G + + +GLR S+ + + N Sbjct: 126 LDADEMAALLAAPDRTTWAGRRDHALLLLAIQTGLRASELVGLKLGDVVLGNGAHIRCMG 185 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDK----QKMNATQFSIWFKAKATKAGVN 283 K L KLL + ++++ + A Sbjct: 186 KGRKERATPLRRETAKLLGAWIGNDKDENRPLFPSIRGERLSRDALEHLVRKHCLSASRT 245 Query: 284 K--------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 + H +R +A G + G + V+ + Y +R+ K Sbjct: 246 CPSIGTKRVTPHTLRHSTAMDLLHHGVDPAVIALWLGHENVETTQIYIHA--DMRMKEKA 303 Query: 336 SRRIS 340 R++ Sbjct: 304 LARVA 308 >gi|23455849|ref|NP_695079.1| putative integrase [Streptococcus phage O1205] gi|2444081|gb|AAC79517.1| ORF1 [Streptococcus phage O1205] Length = 359 Score = 99.8 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 44/335 (13%), Positives = 102/335 (30%), Gaps = 20/335 (5%) Query: 14 ERTRHGKIIYY--FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 R R Y + G+R T A +A + N + TL Sbjct: 4 YRKRSNGWEYRINYYDSTGKRKPKTKGGFRTKSEAIKAA--AEMELKLQDNVNVDEDITL 61 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 ++ +++ + ++ + +I GD + IT + + S T + Sbjct: 62 YDYFKQWCGVYKKPTVSKITYKAYINSQRKIELFFGDKKLKSITATEYQRVLNSYAKTHA 121 Query: 132 --SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + +F ++ + AV + Y+ N C + + ++++++ E Sbjct: 122 QDTVERFNVHVKACIEMAVHEGYIKRNFCKFAKINAKNKGRDIETKFLEVEEYERLIYET 181 Query: 190 SQP-----RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFM 242 S+ A + +G+R ++ V ++ + + KT T +P Sbjct: 182 SKHPEYASYAALYIISKTGIRFAECLGLTVDDIKRDTGMLSVNKTWDYKNNTGFMPTKTK 241 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQF------SIWFKAKATKAGVNKSAHGVRKFSATI 296 + P+ E + + + + K G H +R A+ Sbjct: 242 SSIREIPLDDEFINFIDQLPPTDDGRLLPSLSNNAVNKTLRKIVGREVRVHSLRHTYASY 301 Query: 297 SADAGATAHELMATYGWKTVD-QAETYTKGADRIR 330 + G + ++ E Y + Sbjct: 302 LIAHDIDLISVSQVLGHENLNITLEVYAHQLQEQK 336 >gi|60280069|gb|AAX16408.1| integrase [uncultured murine large bowel bacterium BAC 54B] Length = 419 Score = 99.8 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 48/357 (13%), Positives = 102/357 (28%), Gaps = 32/357 (8%) Query: 13 KERTRHGKII-----YYFRKGHGRRIRLPYPHESTFIPAYMSALTGS-TPKREYINSPRK 66 K R +H + Y + ++ R + RE + Sbjct: 59 KYRIKHIRKREVLNLYIWLHPRNQQERTQNKNTLALAEKIRFEREQEFLEDREGYRLKKD 118 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD----------YRKITT 116 I +RK + R ++++ +++ +R IT Sbjct: 119 GEN---DFIKYFRKHWENELYSKPVRTTYKTSYNRFMRFLEATPRFQRYTSFLRMELITP 175 Query: 117 KHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS---VERPKRKTEGI 171 + + S + K A + R + A+ + + NPC + I Sbjct: 176 EMVTSFTDYLKKVAKGEGAHKSYYMFRTVILHAIEEGLMKKNPCKGIVIHRDVNTLKKEI 235 Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 + + E + + AF F ++G+R D+ ++ + ++ + T Sbjct: 236 LTMDEIKRLAATHYEGEDTALQRAFLFCCFTGIRWCDTVSLTYANVDFSAKILRFNQQKT 295 Query: 232 I----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-- 285 + LL + + T + AG+NK+ Sbjct: 296 EGRSAHSGVTIPLSPTLLKLIGNPIQHTSEKIFNITCYRTTAITRLQKWVKAAGINKTIT 355 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342 H R A AGA + + G ++ E Y D+ + + + Sbjct: 356 WHCARHSFAVNVLGAGANIKTVASLMGHSSIKMTEKYLHVIDQQK--QDAINSLGDL 410 >gi|291283208|ref|YP_003500026.1| Site-specific recombinase, phage integrase family [Escherichia coli O55:H7 str. CB9615] gi|290763081|gb|ADD57042.1| Site-specific recombinase, phage integrase family [Escherichia coli O55:H7 str. CB9615] gi|320663362|gb|EFX30662.1| Site-specific recombinase, phage integrase family protein [Escherichia coli O55:H7 str. USDA 5905] Length = 341 Score = 99.8 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 57/335 (17%), Positives = 103/335 (30%), Gaps = 39/335 (11%) Query: 6 RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65 +LPP V + + P ES + A L K E + R Sbjct: 12 KLPPKVYPNK--------------YSYVWKPTSRESVTLTAIEDGLAALWKKYEETVNHR 57 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 + T L ++ SA++ L+ ++ + + +++ G + +HIR ++ Sbjct: 58 DRAMTFGRLWEKFLASAYYSELSPRTQKDYLQHQKKLLAVFGKVLADSVKPEHIRRYMDK 117 Query: 126 RK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 R + + A +SM ++ W + YV NPC V + K K KE Sbjct: 118 RGEQSKTQANHEKSSMSRVYSWGYERGYVKANPCAGVSKFKAKNRERYVTDKEYQAVLSV 177 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 +A E R SD + + N+ I+ KTG + Sbjct: 178 APV---PVFIAMEIAYLCAARISDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQSV 234 Query: 245 LAMTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAG------VNKSAHGVRKFSATI 296 + + N + F+ + AG + + H + Sbjct: 235 IEKAKQLPKSAYVISNQYGNRYMYKGFNEMWVEARNLAGQISGIATDFTFHDL------- 287 Query: 297 SADAGATA-----HELMATYGWKTVDQAETYTKGA 326 G + + G KT Q Y + Sbjct: 288 -KAKGISDYEGSSRDKQLFSGHKTEGQVLIYDRKV 321 >gi|257087242|ref|ZP_05581603.1| site-specific recombinase [Enterococcus faecalis D6] gi|307270291|ref|ZP_07551599.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX4248] gi|256995272|gb|EEU82574.1| site-specific recombinase [Enterococcus faecalis D6] gi|306513345|gb|EFM81969.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX4248] gi|315026044|gb|EFT37976.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX2137] Length = 382 Score = 99.8 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 52/375 (13%), Positives = 118/375 (31%), Gaps = 43/375 (11%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP---- 64 +V + G + +R + ++ + +A + + + Sbjct: 11 KYVFSYSNKKG-TFWGYRYPYYNSLKHRKEASKRGFESERAANKALLKIQYALETQNTSF 69 Query: 65 -RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKI-----TTK 117 K T+ I + A + +V+++ + ES I G+ + + Sbjct: 70 IENKQLTIDEWIDVWIPYAQ-DNWSVSTKQNIESAIKFHISPLIGNQKLSSLNKITYKRE 128 Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 I + K+T S+ + + + AV + + N + KE Sbjct: 129 FIDKLRQKNKYTESTIQTWHKIVMRMINAAVHNQIIPSNTLTGFKF-DLSNNVRSFSKKE 187 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI------------K 225 + +E Q ++ F LL SG+R + + K Sbjct: 188 LQRFVAVLENEDIQTQVIFLTLLKSGMRKGELMGLRWSDIDLTEKYFDINSTRGDYGENK 247 Query: 226 TQKTGTIITVELPDGFMKLLAMTPIG--------------KETFFINNDKQKMNATQFSI 271 + +I V + + L+ K+ F +++ + ++ + Sbjct: 248 PKTKTSIRKVYFDNSLLTLIKKYKNHEKERLFREGIILSDKDYFILSSRNLPIKQSRITY 307 Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA-DR 328 F+ KA V N + HG+R AT +AGA + G K ++ + Y+ + Sbjct: 308 MFRLLCEKAEVQNITVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVYSDVLKEE 367 Query: 329 IRLGIKNSRRISSVV 343 + ++ + Sbjct: 368 EKETADMMDKLIENL 382 >gi|209917752|ref|YP_002291836.1| phage integrase [Escherichia coli SE11] gi|209911011|dbj|BAG76085.1| phage integrase [Escherichia coli SE11] Length = 387 Score = 99.8 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 50/378 (13%), Positives = 111/378 (29%), Gaps = 56/378 (14%) Query: 17 RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76 R+ + G+R + A T + Sbjct: 6 RNEIWYASYSLPGGKRTKESL-GTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEACL 64 Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS----- 131 + + S S +S + + + I+ I S V + + Sbjct: 65 RWLEEKADKK----SLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWK 120 Query: 132 ------------------------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167 + + L ++ + + A +++ + ++ P + Sbjct: 121 QKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILR-AAERDWKWLEKAPVIKIPAVR 179 Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFS 223 + +R KE+ ++ E + +F L +GLR S+ Q + + Sbjct: 180 NKRVRWLEKEEAKRLIDECPE--PLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVN 237 Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI------------ 271 + K+ I V L D K+L + + K A S Sbjct: 238 PEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKT 297 Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 + + +AG+ + H +R A+ +G L GW++++ Y A Sbjct: 298 SWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNH- 356 Query: 331 LGIKNSRRISSVVDSDDP 348 +++R+I + + P Sbjct: 357 -LTEHARKIDDIFGDNVP 373 >gi|332038023|gb|EGI74471.1| integron integrase IntI4 [Pseudoalteromonas haloplanktis ANT/505] Length = 320 Score = 99.8 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 30/264 (11%), Positives = 77/264 (29%), Gaps = 15/264 (5%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 + + ++A N++ + + ++ ++ I+S ++ + Sbjct: 50 VELFLNHLVNQQNVAPNTQAQALNALSFLFKEVIKKPLS-LSLGFIKSKRATKLPVVLTQ 108 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-EGSQP 192 + FK + Y+ + +R + W +G + Sbjct: 109 ----QEINNFFKVCSAKHYLPCGLLYGSGMRLMEVLRLRIHDIDFDYNCIRIWDGKGGKN 164 Query: 193 RLAFEFLLYSGLRCSD------SCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246 R+ + + S + +++ + + G+ L + Sbjct: 165 RVVTLAVELTPQLRSQIQLVDSYLQLDLKNPLYSGAYMPHLLRKKYPNHNRQLGWQYLFS 224 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304 + + + ++ Q K A A +NK + H +R AT +GA Sbjct: 225 SHKLSIDPESKQLRRHHIDEKQLQRAVKKAAFDAHINKHVTPHTLRHSFATHLLQSGADI 284 Query: 305 HELMATYGWKTVDQAETYTKGADR 328 + G V + YT + Sbjct: 285 RTVQTQLGHSDVRTTQIYTHVLQQ 308 >gi|322420382|ref|YP_004199605.1| integrase family protein [Geobacter sp. M18] gi|320126769|gb|ADW14329.1| integrase family protein [Geobacter sp. M18] Length = 334 Score = 99.8 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 40/334 (11%), Positives = 87/334 (26%), Gaps = 37/334 (11%) Query: 11 VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 V K + G F R R + ++ + Sbjct: 3 VYKRGDK-GVFYMNFTVDGVRVSRSTGKFTKKEAKLVEAVEKKRMMVDGALSPRERAARM 61 Query: 71 LKWLISEYRKSAHWGSLAVNSRISF-------------ESYFDQIIRKSGDFDYRKITTK 117 L L+ ++ ++ + ++ + GD KI + Sbjct: 62 L---------------LSTATQKTYDERWKDNKDGLKSKRLAERAMDLIGDIPLSKIDDQ 106 Query: 118 HIR---SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 I+ +E ++ ++L +M+ L + S R + ++ Sbjct: 107 MIKYLVKQLEESGVKGATINRYLATMKTLLHDHQQPWEHIKLKKESKGRIRVLSKEEELA 166 Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKT--G 230 ++ P A + +G R S+ + + + I Sbjct: 167 VVSLLRDTDHKSKRSYYPEAADLVEVLVDTGCRLSEILNLKYEDINWDTNLITIWVNKGD 226 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVR 290 ++ + +L G + D + +S K + H +R Sbjct: 227 KPRSIPMTKRVGGILLARQEGNWLKPFSIDIDQA-QKAWSWVRKRMMLEYDREFVMHSLR 285 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324 AT D G + + G T+ E Y Sbjct: 286 HTCATRLLDRGIDLYTVKEWLGHSTIQVTERYAH 319 >gi|254478707|ref|ZP_05092078.1| tyrosine recombinase XerD [Carboxydibrachium pacificum DSM 12653] gi|214035394|gb|EEB76097.1| tyrosine recombinase XerD [Carboxydibrachium pacificum DSM 12653] Length = 290 Score = 99.8 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 35/260 (13%), Positives = 90/260 (34%), Gaps = 20/260 (7%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVES 125 + ++ E+ + L+ N+ S+ +Q + + +K T + ++ Sbjct: 3 ESVVGEFLEFLKKNKRLSKNTLESYSRDVEQFLTYMNEHGINFCSAKKSTIVNYLYFLKQ 62 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + + ++ + L+S++ + + ++ + +P + PK + + T E + SF Sbjct: 63 QGKSQATISRALSSIKAFYHYLFAKKKIEEDPSYGINAPKVEKKEPVTLTVEQVDMLLSF 122 Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 +G + + E + SGL+ S+ ++ + I + + + Sbjct: 123 DFGKDEKGLRDKALIELMYASGLKVSEVISLKIEDVNLASGYIVVRSG-KERVIPIGSYA 181 Query: 242 MKLLAMTPIGKETFFI-------NNDKQKMNATQFSIWFKAKATKA--GVNKSAHGVRKF 292 + L N +++ K A K G++ + + +RK Sbjct: 182 VAALQEYIEKGRKPRKGEKALFLNLRGKRLTRQGCWKIIKEYADKISPGLSLTPNILRKS 241 Query: 293 SATISADAGATAHELMATYG 312 A GA + G Sbjct: 242 FAQHMLQNGADLKTVQEMLG 261 >gi|167465690|ref|ZP_02330779.1| phage integrase family protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 301 Score = 99.8 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 42/276 (15%), Positives = 86/276 (31%), Gaps = 23/276 (8%) Query: 72 KWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGD---------FDYRKITTKHIRS 121 K ++ ++ S L + + S I F + T + Sbjct: 12 KQIVQDFIHSLTIHEDLNPKTLKEYASDLKHFIGWFETANYQEENIVFRIEDVATPTLTR 71 Query: 122 GVES----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 E+ + P++ + L +++ F+WA + +P V+ + R T + Sbjct: 72 YQEASQKVMELKPATINRRLITLKRFFEWAASNSIIRRDPSKPVKLVPEEKVSPRQMTDK 131 Query: 178 DMQQFKSFWSEG--SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 + + G + + +L++GLR + C +Q ++++ K V Sbjct: 132 EEDALIAAAEHGGSLRDQTILIVMLHTGLRTMEVCDLAPGDIQIGKLTVRSGKRNKQREV 191 Query: 236 ELPDGFMKLLAMTPIG-----KETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGV 289 L L + F +++ + KA + SAH + Sbjct: 192 PLNATCRSALEKYLVYLPPGSPYLFPSEKTGDRLSERALRHLIQKYMKKARLKGLSAHDL 251 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 R + A H L G + D Y K Sbjct: 252 RHRFGYVMAVN-TPLHRLAQIMGHDSPDTMMIYVKA 286 >gi|300691277|ref|YP_003752272.1| hypothethical protein, phage integrase domain [Ralstonia solanacearum PSI07] gi|299078337|emb|CBJ50988.1| hypothethical protein, phage integrase domain [Ralstonia solanacearum PSI07] Length = 339 Score = 99.8 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 52/341 (15%), Positives = 103/341 (30%), Gaps = 26/341 (7%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 R G + R+ R A+ +L + ++ + + TTL L Sbjct: 5 TKRGGAWLCQVRRKGFP-HRAKAFSSHADAAAWGRSLEAEMDRGVHVPDRQAESTTLADL 63 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSS 132 + Y + NS S I R+ G + +T K + + + T P + Sbjct: 64 LDRYLTEISPTKRSGNSDNSR---VAAITRRLGAYKLTALTPKLLAEYRDEKLRTLNPQT 120 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 I L + A R+ + + + G ++ + + Sbjct: 121 VIHHLALINRALTLATREWGFVLPGGVPKVVKPKLPSGRDRRVQQGELDAIVAATASAVL 180 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAMTPI 250 F + +G+R + + + + I KT T TV L + +L Sbjct: 181 ADLIPFAVETGMRRGEILALDWEFIDFHRRTAYIPKTKTDTPRTVPLSTKALAILQKRQE 240 Query: 251 GKETFFINNDKQKMNA------TQFSIWFKAKATKAG--------VNKSAHGVRKFSATI 296 E + + + ++A G V H +R + + Sbjct: 241 AGEGVPFAMQEDAVTTAFMRAVRRARAVYEAACAAEGKPPSGRWLVGIRLHDLRHEATSR 300 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 + G + E+ G KT++ + YT +R R Sbjct: 301 FFEKGLSVMEVTTITGHKTMEMLKRYTH----LRAADVALR 337 >gi|215485933|ref|YP_002328364.1| predicted integrase [Escherichia coli O127:H6 str. E2348/69] gi|215264005|emb|CAS08346.1| predicted integrase [Escherichia coli O127:H6 str. E2348/69] Length = 350 Score = 99.8 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 43/330 (13%), Positives = 85/330 (25%), Gaps = 30/330 (9%) Query: 14 ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + GK + Y GRR+R A+ T + ++ TL Sbjct: 4 RKLTTGKWLCECYPAGRSGRRVR-KQFATKGEALAFERHTMEETEAKPWLGESVD-RRTL 61 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----- 126 K ++ + K H SL + ++ ++ G+ +T+K + R Sbjct: 62 KDVVELWFK-LHGKSLTAG-QHVYDKLL-LMVDALGNPLATDLTSKMFAHYRDKRLTGEI 118 Query: 127 --------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 +P + + + +F R + L R E W + Sbjct: 119 YFSEKWKKGASPVTINLEQSYLSSVFSELSRLGEWSYPNPLENMRKFTIAEKEMAWLTHE 178 Query: 179 MQQFKSFWSEGSQPRLAFE--FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 + P LA L +G R + + + K ++ Sbjct: 179 QIVELLADCKRQDPILALVVKICLSTGARWREDVNLTRSQVTKYRITFVRAKGKKNRSIP 238 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296 + + + F + + + H +R A Sbjct: 239 ISKELYEEIMALDGFNFFTDCYFQ--------FLSVMEKTSIVLPRGQPTHVLRHTFAAH 290 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326 +G L G + Y A Sbjct: 291 FMMSGGNILALQKILGHHDIKMTMRYAHLA 320 >gi|306833129|ref|ZP_07466259.1| phage integrase family site-specific recombinase [Streptococcus bovis ATCC 700338] gi|304424703|gb|EFM27839.1| phage integrase family site-specific recombinase [Streptococcus bovis ATCC 700338] Length = 385 Score = 99.8 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 51/364 (14%), Positives = 99/364 (27%), Gaps = 46/364 (12%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63 ++ K R IY G + + + E Sbjct: 9 KKSKTGYLYKVR------IYRVIDGKRHDYFKSGFKTRREAKEHEAMIYHKKSTGELSEL 62 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 R + + E+ ++ S + + + I+ G+ KIT + + Sbjct: 63 LRAPERRFEGVFEEWFRTYQDTVERTTSVRTDDIFRLHILPTLGNIAISKITPWQCQEFI 122 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + T + Q + +F +AV+ + +A NP V PKR+ + + D Sbjct: 123 TEKGKTFRNIKQIKSYASQVFSFAVKMKLIAENPMRDVTLPKREQKQSDNFFNVDELHEF 182 Query: 184 SFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS----------------I 224 E + F L YSGLR + + + Sbjct: 183 LAIVKAEEPYKNYALFRLLAYSGLRKGELYSLRWSDMNFDKQILSVTKNLGRIKGKAVEK 242 Query: 225 KTQKTGTIITVELPDGFMKLLAMT-------------------PIGKETFFINNDKQKMN 265 T+ ++ + L +L + Q + Sbjct: 243 STKNRFSVRQIPLDAETTAILREWKQQSKKEKGQLSVTPLIDNDYMFTFVDRDGKIQPLY 302 Query: 266 ATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYT 323 + K K + K + HG R AT+ + G G + +TY+ Sbjct: 303 QDYINSILKRIINKHNLKKITPHGFRHTHATLMIEVGVDPVNAAKRLGHASSQMTLDTYS 362 Query: 324 KGAD 327 + Sbjct: 363 HATE 366 >gi|222153932|ref|YP_002563109.1| phage integrase [Streptococcus uberis 0140J] gi|222114745|emb|CAR43892.1| phage integrase [Streptococcus uberis 0140J] Length = 388 Score = 99.8 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 50/387 (12%), Positives = 118/387 (30%), Gaps = 55/387 (14%) Query: 11 VTKERTRHGKIIYY------FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64 +T+ + R G +Y K G+++ + L S K + + Sbjct: 3 ITEHKKRDGSTVYRASIYLGVDKITGKKVTTKVTGRTKKELKNNIKLAESDFKNKGGSRH 62 Query: 65 RKKPTT-LKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSG 122 + T + L + S ++ NS+ + + I+ GD+ K++T I+S Sbjct: 63 KAISITKYEELALLWWDSYK-HTVKPNSQDNTRKLLYNHILPLFGDYKLSKLSTPLIQSI 121 Query: 123 VESRKHTPSSAIQ-------FLTSM-RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 + + + + ++ + + ++ V + + NP V P+ + R Sbjct: 122 INKLADRTNKGEKGSYLHYDKINALNKRILQYGVVMQAIPFNPAREVILPRNTQKSKRQK 181 Query: 175 TKEDMQQFKSFW-----------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL------ 217 K + S ++FLL +G R +++ + + Sbjct: 182 VKHFENHELRQFLDYMNNLDLDRYRYSYELTLYKFLLATGCRINEALALNWEDIDLDNAI 241 Query: 218 -------QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI-----------NN 259 + + + + + +L + + Sbjct: 242 IHITKTLNYKQEINSPKSKASYRDISIDSQTVNMLKAYQRMQIQEAWKLGRSEKVVFSDF 301 Query: 260 DKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 + N + AGV HG R A++ ++G EL G T+ Sbjct: 302 IHEYPNNRTLQTRLRTHFKNAGVPNIGFHGFRHTHASLLLNSGIPYKELQTRLGHSTISM 361 Query: 319 AE-TYTKGA-DRIRLGIKNSRRISSVV 343 Y+ + + + + + S + Sbjct: 362 TMDIYSHLSKENEKKAVSYFEKAISSI 388 >gi|197105650|ref|YP_002131027.1| phage integrase [Phenylobacterium zucineum HLK1] gi|196479070|gb|ACG78598.1| phage integrase [Phenylobacterium zucineum HLK1] Length = 420 Score = 99.8 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 61/356 (17%), Positives = 106/356 (29%), Gaps = 37/356 (10%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 +V + + G I Y RK +RLP + +++ L + Sbjct: 2 KYVNRVQRPDGTIQLYLRKRGLPAVRLPDDLPPRALEQHVARLI----RDLVPGGTGALR 57 Query: 69 TTLKWLISEY-RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127 TL + Y +S + +LA +++ + + G T + S Sbjct: 58 GTLAAAVRVYELESPEFRALAKSTQYEYRLILKEFDEDLGSVAISAFTPAFVDRLKTSWA 117 Query: 128 HTP-SSAIQFLTSMRVLFKWAVRQEYVAINPCL---SVERPKRKTEGIRPWTKEDMQQFK 183 +A L ++ + K + + +P V RP+ E W+ E + Sbjct: 118 KRGYRAANLRLQVLKNVLKPCLVSGLLEKDPFPLVGQVRRPRALREPHLIWSDEMFEVVA 177 Query: 184 SFWSEGSQPRLAFEFLL--YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 + +P LA + Y G R D QN F + K + V Sbjct: 178 QAALDAGKPGLARALAIARYVGARRGDLVAIPRTARQNGRFRFMSGKRRVRVDVAEDPQL 237 Query: 242 MKLLAMTPIGKETFF-------------------INNDKQKMNATQFSIWFKAKATKAGV 282 + L TP E N + ++ + + Sbjct: 238 TRWLERTPDAPEQRPRRGRKVPPGAEPAATTTIVYNVAGRPYTEDGLALELRKLLARLHA 297 Query: 283 NKSA-------HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 HG+R A AG + E A G + Y + ADR+RL Sbjct: 298 QGRIDSDRYDLHGLRHTCGVELALAGCSDAEGAAMMGHGSPSSFVQYRRQADRVRL 353 >gi|247663502|gb|ACT09076.1| IntI1 [Vibrio cholerae] Length = 313 Score = 99.8 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 34/300 (11%), Positives = 84/300 (28%), Gaps = 52/300 (17%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132 ++ + R+ + ++ + ++ + IR G + + + + + + S Sbjct: 16 VLDQLRERIRYLHYSLPTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 ++ + + + + + RP+ T +++ + + Sbjct: 76 VSTHRQALAAMLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230 RL + L +G+R S+ + V+ L + +I ++ Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193 Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265 + + A + + M Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253 Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 F FK +AG+ K + H +R AT +G + G V YT Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313 >gi|255034767|ref|YP_003085388.1| integrase family protein [Dyadobacter fermentans DSM 18053] gi|254947523|gb|ACT92223.1| integrase family protein [Dyadobacter fermentans DSM 18053] Length = 430 Score = 99.8 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 33/291 (11%), Positives = 90/291 (30%), Gaps = 24/291 (8%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVE 124 I+ + K A G + + + S ++ D + +I + Sbjct: 127 FDEFIAIFEKKAKKGIRSEGTLRHWRSTKRKVEAFIRFRYQRKDIEMTEIDQCFAEEFYD 186 Query: 125 SR------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE--GIRPWTK 176 + +A + + R + K V+++ + NP E + + Sbjct: 187 YLTLHLDEPLSEVTAKKLVKWTRQIVKTGVKKKVIPSNPLEGFVCSGGNKEVLPLELFEV 246 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 E + + + S+ R AF F ++G D +++ + + Sbjct: 247 EAIHKKQIDIDRISEVRDAFIFQCFTGFAYQDMYNLSPENIVKVGRAGEKWLI-KDRGKT 305 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNA-------TQFSIWFKAKATKAGVNK--SAH 287 + +L + + + + + N +++++ K A G+ + + H Sbjct: 306 EVTEMVPILPIVQDLIDKYQSHPYCRVNNRLIPVNSNFRYNVYLKELAVICGIKRPLNTH 365 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338 R A + + G ++ G + + + Y + + + Sbjct: 366 LARHTFADMMLNNGVPLEDVGKMLGHRNIRTTQRYARVRKQRISANVAIAK 416 >gi|240147142|ref|ZP_04745743.1| site-specific recombinase, phage integrase family [Roseburia intestinalis L1-82] gi|257200666|gb|EEU98950.1| site-specific recombinase, phage integrase family [Roseburia intestinalis L1-82] Length = 413 Score = 99.8 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 45/395 (11%), Positives = 112/395 (28%), Gaps = 76/395 (19%) Query: 19 GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78 GK +Y + G+R + + + + + + +++ +T+ ++ Y Sbjct: 24 GKYVYTYVDPEGKRRSI---YSKDIMELREREVKLMKDQLDGLDTYAAGTSTINFVFDRY 80 Query: 79 RKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVESR----KHTPSSA 133 + L + +++ +D+ IR G + + + + ++ Sbjct: 81 ISTKA--ELRETTMRNYKYMYDRFIRGGFGKKKIAAVKYSDVLQFYQHLLKEKEMQINTL 138 Query: 134 IQFLTSMRVLFKWAVRQEYVAIN-----PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 T + F+ AVR + +N ++P + T E + F + E Sbjct: 139 ETIHTVLHPTFQLAVRDNIIRVNPSDGVMAQIKKQPGKNHGVRHALTVEQQRAFIRYIDE 198 Query: 189 GSQPRLA---FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------------- 232 F+FLL +G R ++ + + +I + Sbjct: 199 SPTFYHWASFFKFLLGTGCRIGEAIGIRWEDIDFEKRTISINHSVVYYSREFKEHPICSF 258 Query: 233 -----------ITVELPDGFMKLLAMTPIGKETF--------------FINNDKQKMNAT 267 T+ + D L M ++ F+N N Sbjct: 259 AVSLPKTEAGIRTIPMMDTVYDALQMELDDQKEHGFNETVIDGMKGFIFMNRFGNIHNPQ 318 Query: 268 QFSIWFKAKATKAG-----------------VNKSAHGVRKFSATISADAGATAHELMAT 310 + K + S H +R + + + + Sbjct: 319 AVNRAIKRIYEAHNAEEVVKAAKQHREPVIIPHFSCHHLRHTFCSRFCENETNLKVIQSI 378 Query: 311 YGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVVD 344 G ++ Y + D + + + ++ +D Sbjct: 379 MGHANIETTMDIYAEVTDTKK--QEAIQNLAHNLD 411 >gi|218534740|ref|YP_002424501.1| integrase family protein [Methylobacterium chloromethanicum CM4] gi|218525889|gb|ACK86472.1| integrase family protein [Methylobacterium chloromethanicum CM4] Length = 291 Score = 99.8 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 45/250 (18%), Positives = 87/250 (34%), Gaps = 9/250 (3%) Query: 84 WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL 143 S + N+R ++E + + G + ++ + R + ++ +++ L Sbjct: 31 ARSSSPNTRRNYEREARRFLAHVG-RPLAAVRMGDLQEYIAGRPGSSATTALSAAALKSL 89 Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203 F +A Y+ N +V+ P K E + R+ L G Sbjct: 90 FAFAQEAGYLRFNVGAAVKVPPIKNTLAERIMPEGDALLMIRQEPALRNRVLLTVLYGGG 149 Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTI------ITVELPDGFMKLLAMTPIGKETFFI 257 LR S+ C + L + + G + ++ L + + F Sbjct: 150 LRISEVCSLRWRDLAPRDEAGQATVFGKGGKTRVVLLSAATWKVLQALREEALADDPVFR 209 Query: 258 NNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKT 315 + ++ + KA A +AG+ SAH +R A+ + D GA H + AT G + Sbjct: 210 SRKGGALDPSAVHRIVKAAAARAGLPADVSAHWLRHAHASHALDRGAPIHLVQATLGHAS 269 Query: 316 VDQAETYTKG 325 V Y Sbjct: 270 VATTGRYLHA 279 >gi|260912329|ref|ZP_05918879.1| integrase [Prevotella sp. oral taxon 472 str. F0295] gi|260633556|gb|EEX51696.1| integrase [Prevotella sp. oral taxon 472 str. F0295] Length = 410 Score = 99.8 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 38/312 (12%), Positives = 99/312 (31%), Gaps = 25/312 (8%) Query: 54 STPKREYINSPRKKPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKS---- 106 R + ++ TT + ++ + +++ +S + Sbjct: 92 LDKIRSFFVGKDREYTTFLPIFDKFNEDVRQRVGHTISKDSLQKYSVLRRHFAEFLIYKY 151 Query: 107 GDFD--YRKITTKHIRSGVESR----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 G D + T ++ +++++ L +++ + +A ++ Y+ +P L+ Sbjct: 152 GKKDIGLAEFTPSVVQDFELYLSTAAGCAYNTSVKKLKALKTVTIYAQKRGYLLHDPFLN 211 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHL 217 + T E++ + + + R F F ++GL D ++ Sbjct: 212 HRF-HLEPVNRGFLTDEEIMKIANKDFAIQRLELVRDVFIFSCFTGLAYIDVSNLTPDNI 270 Query: 218 QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--NATQFSIWFKA 275 +VE + + + K + + + K Sbjct: 271 VTLDDKQWIMTKRQKTSVETNVLLLDIPKSIIAKYSHKTYRDGKLFPILTNQKTNAYLKE 330 Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 A GV K + H R AT+S G + G + + Y + ++ I Sbjct: 331 IADLCGVKKNLTFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKK---I 387 Query: 334 KN-SRRISSVVD 344 ++ +++ +D Sbjct: 388 EHDMEQLAGKLD 399 >gi|67920313|ref|ZP_00513833.1| Phage integrase:Phage integrase, N-terminal SAM-like [Crocosphaera watsonii WH 8501] gi|67857797|gb|EAM53036.1| Phage integrase:Phage integrase, N-terminal SAM-like [Crocosphaera watsonii WH 8501] Length = 322 Score = 99.8 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 42/283 (14%), Positives = 86/283 (30%), Gaps = 31/283 (10%) Query: 86 SLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVES-------RKHTPSSAIQF 136 L SR + + I GD D + +R + +K P +A + Sbjct: 36 GLGEGSRRTIRYSLNTIASLLTNGDCDADTLDWSKLRYHHTAAVRVALLQKLAPVTANKM 95 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI----RPWTKEDMQQFKSFWSEGS-- 190 L+++R + A R +A + R +++ E S Sbjct: 96 LSALRRVLLEAYRLGLMAADDYQKAVDFPNIQAEPELRGRSLDSTEIRALLGTCGEESVM 155 Query: 191 --QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVELPDGFMKLLA 246 + L +G+R S+ + ++ + + K G V LP + + Sbjct: 156 DIRDAAIMVMLRGTGIRRSELVKLELRDFDEQTGEVLVRKGKRGKTRRVYLPFDAISFIQ 215 Query: 247 MTP----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSAT 295 + + +MN+ + +A AG+ S H R+ + Sbjct: 216 RWLGVRGEEEVCLFCRIHRGGHLKLGQMNSDTVWRIIQKRAKMAGIESFSPHDFRRTFCS 275 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSR 337 DAG + G + Y + + R ++ + Sbjct: 276 DLLDAGVDIVTVQKLAGHSSPVTTAKYDRRGEETKRRAVQCLK 318 >gi|312870846|ref|ZP_07730951.1| site-specific recombinase, phage integrase family [Lactobacillus iners LEAF 3008A-a] gi|311093536|gb|EFQ51875.1| site-specific recombinase, phage integrase family [Lactobacillus iners LEAF 3008A-a] Length = 329 Score = 99.8 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 33/276 (11%), Positives = 77/276 (27%), Gaps = 14/276 (5%) Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119 T + ++ + + + S + + + + K + R++ T + Sbjct: 40 ETEEETNAELTNEHFLNNFLSAKRIEGCSEKSLTYYRATIEVMTTKI-KKNVREMETDDL 98 Query: 120 R----SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 R + + + + + F W + Y+ +P + + K +T Sbjct: 99 RTYLTEYQQEKNSSKVTVDNIRRILSSFFSWLEDENYILKSPARRIHKVKAALTIKETYT 158 Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIIT 234 E +++ E + + L +G+R + + Sbjct: 159 DEALEKMHDSCDE-PRDLALIDILASTGMRVGELVLLNRDDINFEERECVVFGKGSKERM 217 Query: 235 VELPDGFMKLLAMTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAH 287 V L G+ ++ + K + K H Sbjct: 218 VYFDARTKIHLLTYLQGRTDDNPALFVSLRAPHDRLKIGGVECRLRELGNKLNIEKVHPH 277 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 R+ AT++ D G +L G K +D Y Sbjct: 278 KFRRTLATMAIDKGMPIEQLQQLLGHKRIDTTLRYA 313 >gi|254827675|ref|ZP_05232362.1| tyrosine recombinase XerC subunit [Listeria monocytogenes FSL N3-165] gi|258600054|gb|EEW13379.1| tyrosine recombinase XerC subunit [Listeria monocytogenes FSL N3-165] Length = 291 Score = 99.8 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 34/273 (12%), Positives = 83/273 (30%), Gaps = 20/273 (7%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTP 130 L+ +YR + L + + S + + K D K+ + I S + +R + Sbjct: 4 SDLLIKYRDYLYSKQLTDGTIDNNISIITRELFDKGVKIDITKVEYRKILSSMRNR-LSK 62 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK-----EDMQQFKSF 185 ++ ++ ++ + + + ++ S K + + + F Sbjct: 63 NTMYSYVNVIKRFYDYLIDFKFYNGKNPFSSSVVKITASKPKNVLYEDEILDIYKIFDME 122 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 F+FL +G+R ++ + I G + + + ++ Sbjct: 123 DKTTGYQEFLFDFLYSTGIRLAEFINLNIYDFDFENRVITVVGKGNKERIVVYNESLEQT 182 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-------------NKSAHGVRKF 292 ++ + + ++ + + A V H +R Sbjct: 183 MLSYLKARQAIMKFHRKSHSYFLIDFNTGQRLKAARVYNEIIRVGDIVHRKIHPHMLRHS 242 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKG 325 AT + G + G +V E YTK Sbjct: 243 FATHLLENGCDLRYIQELLGHSSVSTTEIYTKV 275 >gi|228470660|ref|ZP_04055516.1| putative tyrosine type site-specific recombinase [Porphyromonas uenonis 60-3] gi|299143043|ref|ZP_07036164.1| integrase [Prevotella oris C735] gi|228307668|gb|EEK16647.1| putative tyrosine type site-specific recombinase [Porphyromonas uenonis 60-3] gi|298575494|gb|EFI47379.1| integrase [Prevotella oris C735] Length = 427 Score = 99.8 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 42/326 (12%), Positives = 101/326 (30%), Gaps = 36/326 (11%) Query: 57 KREYINSPRKKPTTLKWLIS---EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113 +E + TL L EY++ +L+ + +F+ + + D Sbjct: 95 LKERYMQQSRPMPTLTELYQSVCEYKEELQGRTLSKATVRAFKDSYKSFVHFLQVRDRAD 154 Query: 114 ITTKHIRS---------GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL--SVE 162 + + + SS L + + + A+++ YV +P +E Sbjct: 155 CMPTEVDKTLLEDYRLFMLRDLGNKESSVGNRLRHLHQVIRKALQERYVREDPFELIDIE 214 Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222 P + + + + ++ S + RL F ++GL SD + + + Sbjct: 215 TPTYERNALTADDLQKLLAYRPHRSTDNHCRLIFLLGCFTGLAFSDLKKLRMDDVYTFGD 274 Query: 223 SIKTQKTGTI----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278 + ++ + + + + + + F+ + Sbjct: 275 GRRYISLCRTKTQNRSIVPLLPVAEKILAIVSHGRREGLFFREFP-SNSNFNRTIQEICI 333 Query: 279 KAGVN----KSAHGVRKFSAT-ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 KAG+ ++H R AT I + G + G + + E Y + + ++ Sbjct: 334 KAGLPPHTQATSHTARHTFATTICLENGLPIETVSKMLGHRFISTTEIYARVT-KSKIAK 392 Query: 334 K-----------NSRRISSVVDSDDP 348 + R+ + S P Sbjct: 393 EMQPLMGSEHTRVLRKALRLCPSRTP 418 >gi|261251522|ref|ZP_05944096.1| probable bacteriophage integrase [Vibrio orientalis CIP 102891] gi|260938395|gb|EEX94383.1| probable bacteriophage integrase [Vibrio orientalis CIP 102891] Length = 347 Score = 99.8 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 47/319 (14%), Positives = 92/319 (28%), Gaps = 26/319 (8%) Query: 23 YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSA 82 Y + G+RIR A+ + ++ +K TL+ L+ + K Sbjct: 18 CYPQGRAGKRIRKR-FATKGEALAFEKFTMAEVDDKPWLG-EKKDLRTLQDLVELWYKLH 75 Query: 83 HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS----------- 131 + + I+ + G+ K T K +RK Sbjct: 76 GQHLKSA--EKVYPR-LCSIVEELGNPFAIKFTAKDFVHWRSTRKAKHRHIGPDTGKFIS 132 Query: 132 --SAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + L MR +F E+ NP SV+ + + ED+ ++ Sbjct: 133 APTNNLDLRYMRAVFNELTSLGEWTHPNPLASVKSIPVTESEMGFLSNEDITALFERITK 192 Query: 189 GSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 + + L + L +G R S++ + + + K+ TV + + L Sbjct: 193 SKRAKEFELVCKICLSTGARISEANNLRLPQITKYKITFIDTKSKKNRTVPITEKLYNEL 252 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAH 305 E + + ++ H R A+ +AG Sbjct: 253 IEFERTGEKDRLFKGCHH----GIAYIINQTFPDLPEGQNTHVFRHTFASRFMEAGGNIL 308 Query: 306 ELMATYGWKTVDQAETYTK 324 L G + Y+ Sbjct: 309 VLQKILGHSDIKMTMRYSH 327 >gi|313888363|ref|ZP_07822033.1| site-specific recombinase, phage integrase family [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845643|gb|EFR33034.1| site-specific recombinase, phage integrase family [Peptoniphilus harei ACS-146-V-Sch2b] Length = 411 Score = 99.4 bits (246), Expect = 6e-19, Method: Composition-based stats. Identities = 47/415 (11%), Positives = 101/415 (24%), Gaps = 80/415 (19%) Query: 1 MTPSLRLPPFVT----KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTP 56 M + V + + +G + ++ GRR + + L + Sbjct: 1 MVKRRKDSKGVVLKDGEYQRSNGTYEFKWQDKIGRRKSIYAKTLKELREKELDILRNTID 60 Query: 57 KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKIT 115 S T K + L N+ ++ + Q + G I Sbjct: 61 GINNEGSSLSVNDTFK------LWTKVKRGLKDNTFKNYIYMYQQFVEPTFGRIKLSDIK 114 Query: 116 TKHIRSGVESRKHT----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLS--------VER 163 +RS K S+ T + + + AV EY+ NP + Sbjct: 115 RSDVRSFYNRLKEDQGLMVSTIDCVHTVLHQVLELAVDDEYIRFNPSDNALKELKVAYRN 174 Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH------- 216 K + + + +++ S E + F +L++G+R + Sbjct: 175 ESPKKKAMTIEEQVLFEEYLSNSDEYKKWYPIFIVMLWTGMRVGEVTGLQWDDLDFDNGL 234 Query: 217 ---------------LQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261 L N + ++ + M ++TF I Sbjct: 235 INVNRTLVYYSKGKGLNNRYAINTPKTESGKRSIPMVQKVKDAFLMERELQKTFGIECCD 294 Query: 262 ---------------QKMNATQFSIWFKAKATKAGV-----------------NKSAHGV 289 + N + + + + S H Sbjct: 295 SIDGFKDFVFLNRFGKVHNNGTLNKALRRIVRDCNLSIMDKNKSNSNDILLVPHLSNHIF 354 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVV 343 R T + + + G + Y + + I+ + Sbjct: 355 RHTFTTRLNEQNINTKAMQSILGHSDISTTMDIYVDATEDFK--IEQMGEFEKAM 407 >gi|227537901|ref|ZP_03967950.1| integrase [Sphingobacterium spiritivorum ATCC 33300] gi|325953712|ref|YP_004237372.1| integrase [Weeksella virosa DSM 16922] gi|227242286|gb|EEI92301.1| integrase [Sphingobacterium spiritivorum ATCC 33300] gi|323436330|gb|ADX66794.1| integrase family protein [Weeksella virosa DSM 16922] Length = 416 Score = 99.4 bits (246), Expect = 6e-19, Method: Composition-based stats. Identities = 41/290 (14%), Positives = 81/290 (27%), Gaps = 28/290 (9%) Query: 65 RKKPTTLKWLISEYRKSAHWG---SLAVN-SRISFESYFDQIIRK------SGDFDYRKI 114 T ++ L VN +R ++ + D + + Sbjct: 107 ESGEITFFKFYEQFLSDYEKKVNSGLRVNGTRSKYKILLKHLRNFALTKYGYSDVSFNDL 166 Query: 115 TTKHIRSGVESRKHTPSSAIQFLTS----MRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170 T ++ + S A + L + A+ ++++A NP + K+ + Sbjct: 167 TPDFVQEFDYYLRDAQSLAHNTIWLYMIGFTTLCRLAMSRKHLAFNPFSEYKNTKKDKDR 226 Query: 171 IRPWTKEDMQ--QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228 E Q F + + F F ++GL SD ++Q+ + Sbjct: 227 GYLLRNELEQLVTFNCEKKKDELVKDLFVFSCFTGLSYSDMKGLRNSNIQDFFDDNQWII 286 Query: 229 TGTIITVELPDGFMKLLAMTPIGKE---------TFFINNDKQKMNATQFSIWFKAKATK 279 T + + + I K +N + + S K Sbjct: 287 VRRKKTATSSNVMLLDIPKMIIEKYAGFAKDGKVFPVPSNTICNDSLKRISQLIDCLKEK 346 Query: 280 AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + H R AT+ G L G K + + Y K + Sbjct: 347 ---KVTFHLARHTFATLFLSEGVPLESLSKMLGHKNIATTQIYAKILNEK 393 >gi|290957659|ref|YP_003488841.1| integrase [Streptomyces scabiei 87.22] gi|260647185|emb|CBG70288.1| putative integrase [Streptomyces scabiei 87.22] Length = 407 Score = 99.4 bits (246), Expect = 6e-19, Method: Composition-based stats. Identities = 55/379 (14%), Positives = 110/379 (29%), Gaps = 65/379 (17%) Query: 9 PFVTKERTRHG-KIIYYFRKGHGR-----RIRLPYPHESTFIPAYMSALTGSTPKREYIN 62 + E+TR G +R+ GR A+ S + Y++ Sbjct: 15 KYYPCEKTRCGHNWTVRYREPGGRTARQREKTFAKKTGPDGADAFASKVEHDKGMGVYLD 74 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRS 121 P++ TL+ E+ LA +R ++E + ++ G + K Sbjct: 75 -PKRGDITLRAWSKEWL---GLQILAEGTRRNYEGFTRNHVVPHLGRKTLAGLVKKDFEK 130 Query: 122 GVESRK-----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + S+ + + + + AV ++ +A NP V+ P+ + + Sbjct: 131 FIADLHRNGEGMAASTINDRMKFVAAMMQAAVTEKRIAENPAAGVKVPRTSSFAVDEDEI 190 Query: 177 ED-MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 + Q RL +GLR S++ + + + ++ Q + Sbjct: 191 PTLEEVDLVAKYISPQYRLTIYLQAAAGLRISETLAFATECRRTDFIRVRWQVSSKANRG 250 Query: 236 ELPDGFMKLLAMTPIGKETFFINND----------------------------------- 260 + F+ L Sbjct: 251 DCRTRFVPLKHRAEGEYRDIPTAPFLEEEIVAHAERWDAVPVVFTDKGGRDKELEVFFAP 310 Query: 261 -----KQKMNATQFSIWFKAKATKAGV-------NKSAHGVRKFSATISADAGATAHELM 308 AT ++ FK AG+ + HG+R F A+ + G HE+ Sbjct: 311 RERGKGTMPTATTYAYHFKKALKAAGLVRADGKPKYTPHGLRHFFASTALANGIPIHEVS 370 Query: 309 ATYGWKTVDQA-ETYTKGA 326 G K++ + Y Sbjct: 371 RWLGHKSIKTTVDIYGHLV 389 >gi|225860049|ref|YP_002741558.1| integrase [Streptococcus pneumoniae Taiwan19F-14] gi|298229486|ref|ZP_06963167.1| integrase [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255139|ref|ZP_06978725.1| integrase [Streptococcus pneumoniae str. Canada MDR_19A] gi|298501793|ref|YP_003723733.1| bacteriophage integrase [Streptococcus pneumoniae TCH8431/19A] gi|307126177|ref|YP_003878208.1| integrase [Streptococcus pneumoniae 670-6B] gi|225728040|gb|ACO23891.1| integrase [Streptococcus pneumoniae Taiwan19F-14] gi|298237388|gb|ADI68519.1| bacteriophage integrase [Streptococcus pneumoniae TCH8431/19A] gi|306483239|gb|ADM90108.1| integrase [Streptococcus pneumoniae 670-6B] Length = 388 Score = 99.4 bits (246), Expect = 6e-19, Method: Composition-based stats. Identities = 50/386 (12%), Positives = 115/386 (29%), Gaps = 56/386 (14%) Query: 11 VTKERTRHGKIIYY------FRKGHGRRIRLP-YPHESTFIPAYMSALTGSTPKREYINS 63 +T+ + G +Y G++++ + A K Sbjct: 3 ITEYTKKDGSTVYRSSVYLGIDTVTGKKVKTTISGRTKRELKAKALQAQIDFEKDGSTVY 62 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSG 122 + T L+ + ++ ++ ++ + + ++ G++ K+T I+ Sbjct: 63 KAVEIKTYAELVENWLETY-CHTVKKSTLMGTKFKIDKYLLPAFGNYRLDKLTPPIIQKQ 121 Query: 123 VESRKHTPSSAIQ-------FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 V + + + + + K+AV + + NP V P+RK + + Sbjct: 122 VNQWAKDYNQLGKGFQEYPLLHSLNKRILKYAVSLQAIPFNPARDVIVPRRKEKEGQKLK 181 Query: 176 KEDMQQ---------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI---FS 223 D + + ++ LL +GLR + + Sbjct: 182 YLDDDNLKKFLTYLEQLPNTYKNFYDTVLYKTLLATGLRIRECLALKWSDIDLKNGTLDV 241 Query: 224 IKTQKTGTIITVELPDGFMKLLA---------------------MTPIGKETFFINNDKQ 262 KT IT ++++ + E F N+ + Sbjct: 242 NKTLNIIKEITGPKTKSSIRVIDLDNKTVLMLRLYKARQSQIGKEMGLTYEKVFSNSFDK 301 Query: 263 KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE- 320 ++A S +AG + + H R A+I +AG E+ G + Sbjct: 302 HIDARMLSFRLVKHLERAGCPRFTFHAFRHTHASILLNAGLPYKEIQTRLGHAKLSMTMD 361 Query: 321 TYTKGA-DRIRLGIK----NSRRISS 341 Y+ + D + ++ S Sbjct: 362 IYSHLSKDNQKNATSFYEKAIEKLKS 387 >gi|194017070|ref|ZP_03055682.1| DNA integration/recombination [Bacillus pumilus ATCC 7061] gi|194010938|gb|EDW20508.1| DNA integration/recombination [Bacillus pumilus ATCC 7061] Length = 363 Score = 99.4 bits (246), Expect = 6e-19, Method: Composition-based stats. Identities = 53/363 (14%), Positives = 97/363 (26%), Gaps = 58/363 (15%) Query: 11 VTKERTRHGKIIY---YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67 + R R Y Y+ +R T A A + Sbjct: 1 MVSFRQRGKDWEYRIPYYDPVTQKRREKSKKGFRTKKEAATEAAIVQAEINGDFVR-KDD 59 Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127 T+ I + + + ++S I + G + +T K + Sbjct: 60 NITISSYIDLWFEKYKLTVKKSSWDSRYDSII-VIKKNLGSCRVKDVTEKTYEGFLNKIA 118 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG---------------IR 172 P A LT++ +F +R+ + + ++ Sbjct: 119 --PEYAKNTLTNIHQVFNMMIREAVRDSYFKDNPIHAVNLPKKAKEKKVEELDEDLKDMK 176 Query: 173 PWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQN----------- 219 W KE+++ F S +PR F L+YSGLR ++ + Sbjct: 177 FWEKEEIKLFLQVVSRKGRPRDLAMFLLLIYSGLRIGEAVALTWDKVDFKKSEIKVRYTL 236 Query: 220 ----------------------NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI 257 N+ I + + + ++ F Sbjct: 237 FREKDLKSNYELLSPKTESSIRNVPVPPQVIMQLRILKNVQEQVKNDVGELYKDEDFVFA 296 Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTV 316 +N A F+ KAGV K + H +R A++ AG E G + Sbjct: 297 DNSGMPEPARNFNYRMATYIKKAGVTKITPHNLRHTYASLLFAAGIDLKEAQRRLGHSSS 356 Query: 317 DQA 319 Sbjct: 357 KTT 359 >gi|126700136|ref|YP_001089033.1| integrase [Clostridium difficile 630] gi|115251573|emb|CAJ69406.1| Integrase [Clostridium difficile] Length = 372 Score = 99.4 bits (246), Expect = 6e-19, Method: Composition-based stats. Identities = 44/365 (12%), Positives = 97/365 (26%), Gaps = 39/365 (10%) Query: 15 RTRHGKIIYYFRK--GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 R R K Y +I+ L K T Sbjct: 9 RKRGEKFYVYVEYIEETTGKIKQKSYGSYEKKKDAEKHLIEIKSTINNNKFVAPKDITFV 68 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG--VESRKHT 129 +Y + + + S +S+ I + ++ +++ T Sbjct: 69 ERCYKYIDMNK-NNWSPYTVTSTKSWVKNYIEPFFKNLKLTEVNPSSVQAFVNYNFNNST 127 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 +SA + + + + A R + N C ++ P ++ + G Sbjct: 128 FTSAKVRYSFLSSVIREAYRLREIQENSCDFIKLPSKEKYSTNEIYNREEVLLLIEKLLG 187 Query: 190 SQPRLAFEFLL--------YSGLRCSD--------SCRAGVQHLQNNIFSIKTQKTGTII 233 + + +L +GLR SD + + + I + + + Sbjct: 188 NNIEIPILLMLLLGLRMGEATGLRWSDVDLDNNLINVNQILVYSNGKISFKEPKTPKSKR 247 Query: 234 TVELPDGFMKLLAMTP-------------IGKETFFINNDKQKMNATQFSIWFKAKATKA 280 + P ++ L + +N + + F K Sbjct: 248 ALSAPKELIEKLKIEKLRQSKLKLQGILENKNNLVCLNTNLNPFLPSSLRKTFHNFTKKN 307 Query: 281 GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRR 338 + K H +R SAT+ G + G + Y+ + + S Sbjct: 308 NLKKIRIHDLRHTSATLLLLGGTNMKVVSERLGHTDIKITMNRYSHVL--KEMDKEASDN 365 Query: 339 ISSVV 343 +S ++ Sbjct: 366 LSELL 370 >gi|329936187|ref|ZP_08285980.1| phage integrase [Streptomyces griseoaurantiacus M045] gi|329304297|gb|EGG48177.1| phage integrase [Streptomyces griseoaurantiacus M045] Length = 415 Score = 99.4 bits (246), Expect = 6e-19, Method: Composition-based stats. Identities = 55/392 (14%), Positives = 95/392 (24%), Gaps = 66/392 (16%) Query: 8 PPFVTKERT--RHG---KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62 P ++ R+G + + G +P + A + R Sbjct: 16 PDGKVRKVKTERYGSGLRYRARYVGPDGTEKAKSFPDRQKRLADQWLAHIEADMARGQYI 75 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRS 121 PR T + + + N++ S ES G HIR Sbjct: 76 DPRAARITFQQYAERWVAT---QGADPNTQASMESQLRLHAFPYLGSRPLGSFQPAHIRD 132 Query: 122 GVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 V S A +++R AV ++ NPC + + R Sbjct: 133 WVRQLQENGVRGSYARTIYSNVRAALSAAVDDGHLPRNPCAARSVRPPTVDAKRIVPWTP 192 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--------- 229 + F + + R + GLR + V + + ++ + Sbjct: 193 ERVFAVRAAMPERFRAMVDLGAGCGLRQGEILGVAVDAIDFDSDTLHVVQQLKLSRSKAV 252 Query: 230 ------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW----------- 272 G + V LP L I + + + Sbjct: 253 FAPPKGGKLRDVPLPGPVADALRTHMKEFPPVEITLPWKVADGPPVTKRLIFTGPRGGHV 312 Query: 273 ---------FKAKATKAG-----VNKSA---------HGVRKFSATISADAGATAHELMA 309 +K AG H +R F A++ DAG L Sbjct: 313 WRTSLNEEVWKRALAAAGAIPVPERGRPYAESRENGMHALRHFYASVLLDAGENIKALAE 372 Query: 310 TYGWKTVD-QAETYTK----GADRIRLGIKNS 336 G Y +R R + Sbjct: 373 YLGHSDPGLTLRVYAHLMPSSRERTRKAVAAV 404 >gi|126461390|ref|YP_001042504.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029] gi|126103054|gb|ABN75732.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029] Length = 389 Score = 99.4 bits (246), Expect = 6e-19, Method: Composition-based stats. Identities = 59/247 (23%), Positives = 101/247 (40%), Gaps = 12/247 (4%) Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 + +H+ TP A + L + L AV+ E NP V+R K + G Sbjct: 136 MRVRHVMEIKAGLSATPQKAKKTLKRLSQLMDLAVKLEMRGDNPVKGVDRYKTGSGGFHA 195 Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI- 232 WT+ ++ +F + G+ L+ +LYSG D+ + G +++ + QKT Sbjct: 196 WTEAEIARFFEVYLPGTPAFLSMTLMLYSGASRCDAVKLGWGNIRGGRLEYRRQKTRKNP 255 Query: 233 ----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAH 287 +++ + + L P G TF + AT + KAG+ S+H Sbjct: 256 EGILVSIPVHPFLAEALQAVPNGAFTFLQTEQGKSRTATGLGTAMRKWCDKAGLPLCSSH 315 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI------SS 341 G+RK A+AG AHE+M+ G T+ +A+ Y + R L R+ Sbjct: 316 GLRKAICRRIAEAGGEAHEIMSVSGHITLAEAQRYCEDFGRKGLADSAIARLPHGAKGEQ 375 Query: 342 VVDSDDP 348 + + P Sbjct: 376 KLANHPP 382 >gi|297572206|ref|YP_003697980.1| integrase family protein [Arcanobacterium haemolyticum DSM 20595] gi|296932553|gb|ADH93361.1| integrase family protein [Arcanobacterium haemolyticum DSM 20595] Length = 260 Score = 99.4 bits (246), Expect = 6e-19, Method: Composition-based stats. Identities = 38/265 (14%), Positives = 85/265 (32%), Gaps = 5/265 (1%) Query: 82 AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMR 141 +L+ + + + ITT I V S + + + T ++ Sbjct: 1 MRAQALSDLTIHERIRVSNCLCEYVDATPVT-ITTDQIIEWV-SLLPSAVTKWTYFTHIK 58 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201 LF W NP L ++ P+R RP + E ++ + + R Sbjct: 59 ALFTWLEITRRRTDNPLLGLKAPRRPKYYPRPISLEVIEHVLN-QRLYRKTRCMILLAFN 117 Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261 GLR + C+ Q + + G ++ + ++ T +F + Sbjct: 118 CGLRVGEICKVRGQDYDRQAGLLTVEGKGGKRSIIPVNSALQPFFNTMPAHGWWFPCRNG 177 Query: 262 QKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321 + + + V+ +H +R AT A + +++ Sbjct: 178 GHVRSRSVGDTIVRTFRRYEVHMVSHQLRHTFATELLAADVDLRIVQLLMRHESIQTTAL 237 Query: 322 YTKGADRIRLGIKNSRRISSVVDSD 346 YT+ A +L + + ++ + + Sbjct: 238 YTRVARAQQL--EGTNKLPVFLGKE 260 >gi|295110676|emb|CBL24629.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162] Length = 400 Score = 99.4 bits (246), Expect = 6e-19, Method: Composition-based stats. Identities = 54/371 (14%), Positives = 107/371 (28%), Gaps = 68/371 (18%) Query: 19 GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78 G+ I F G+R L + A+ + E+ + + TL + Sbjct: 20 GRYIARFTSKTGKRKTLYDFKLNELKRKLREAVY----EDEHGLNGNGESITLNAWYVTW 75 Query: 79 RKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAI 134 + ++ + + SY++ ++ G + I T H++ + + + Sbjct: 76 TELYKKKTVKMTTIYKNHSYYNSRVKNSIGKMYLQDIKTYHVQKFLNDLIDSGLAHGTVS 135 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194 + + AV EY+ NPC+ VE PK + R TKE+ ++F +F S + Sbjct: 136 NIRFMLSDMLDKAVLSEYIRKNPCIGVEMPKEVKKERRVLTKEEQEKFFTFASSYIHINV 195 Query: 195 AFEFLLYSGLRCSDSCRAGVQH-------------------------------------- 216 F + +G R + + Sbjct: 196 LK-FAVTTGCRIGEVLGLKWEDCDFGKREITINKTIHYSKASSPVEGSKFFYTTAKTISS 254 Query: 217 ---LQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273 + + + I E + + F +D + + Sbjct: 255 NRVIPMTDEVYEILQNQKIKQTEQKMWKRSIWRQHKEFQNLVFTCSDGSPVYYYNVNSAI 314 Query: 274 KAKATKAGV------------NK-----SAHGVRKFSATISADAGATAHELMATYGWKTV 316 K K V K + H +R AT + G + G T+ Sbjct: 315 KDYVAKINVIEIELAKEEKREPKIFELFTCHTLRHTYATRCYENGVDQQVVQKLLGHSTL 374 Query: 317 DQ-AETYTKGA 326 + YT + Sbjct: 375 AMTTDLYTHVS 385 >gi|116627651|ref|YP_820270.1| integrase [Streptococcus thermophilus LMD-9] gi|116100928|gb|ABJ66074.1| Integrase [Streptococcus thermophilus LMD-9] Length = 388 Score = 99.4 bits (246), Expect = 6e-19, Method: Composition-based stats. Identities = 45/384 (11%), Positives = 111/384 (28%), Gaps = 60/384 (15%) Query: 11 VTKERTRHGKIIYY------FRKGHGRRIRLPYP-HESTFIPAYMSALTGSTPKREYINS 63 + + + + G +Y G+++ + Sbjct: 3 INEIKKKDGSTVYRANIYLGVDVITGKKVTTKVTARTKKELKTKAQQAQFDFKANGSTRY 62 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG 122 T + L + S ++ N++ + + + ++ G+F K+TT I+S Sbjct: 63 KEVAIETYEELAISWWDSYK-NTVKANTKRAQKGLLNNHVLPLFGEFKLDKLTTPLIQSM 121 Query: 123 VESRKHTPSSA--------IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 + ++ ++ + + + ++ V + + NP +V P+ + + Sbjct: 122 MNKLANSTNTGEAGAYLHYDKIHALNKRILQYGVVLQVIPTNPANNVVLPRNTQKDKKAK 181 Query: 175 TKEDMQQFKSFW-----------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--- 220 K + + ++FLL +G R +++ + + Sbjct: 182 VKHFNNDELKQFLTYLDSLDNSKYKNYYDITLYKFLLATGCRINEALALSWSDIDLDNSV 241 Query: 221 ---------------------IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259 I K + + + F + Sbjct: 242 VHITKTLNYEMKLNSPKSKSGYRDIDIDKQTVTMMKRYQHKQTQEAWKLGRTETVVFSDF 301 Query: 260 DKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 + N+ +AGV N HG R A++ ++G EL G + Sbjct: 302 IHEYPNSRTLQSRLGTHFKRAGVTNIGFHGFRHTHASLLLNSGIPYKELQHRLGHSKLSM 361 Query: 319 AE-TYTKGADRIRLGIKNSRRISS 341 Y+ L +N+++ S Sbjct: 362 TMDIYSH------LSKENAKKAVS 379 >gi|257068693|ref|YP_003154948.1| tyrosine recombinase XerD subunit [Brachybacterium faecium DSM 4810] gi|256559511|gb|ACU85358.1| tyrosine recombinase XerD subunit [Brachybacterium faecium DSM 4810] Length = 332 Score = 99.4 bits (246), Expect = 6e-19, Method: Composition-based stats. Identities = 36/310 (11%), Positives = 80/310 (25%), Gaps = 48/310 (15%) Query: 55 TPKREYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRK 113 P E P + + +Y L+ N+ ++ + + + D Sbjct: 8 DPAPEQALRPADERI-----LEQYLSHLRIERGLSANTLAAYRRDLRRYLAELARRDIDA 62 Query: 114 --ITTKHIRSGVESRKHTP-----------SSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 + + + ++S + + ++ + + + + +P Sbjct: 63 TAVDPQQLGRWLQSLRTGADGGSVLSASSAARSLAAVRGLHSFLD--AERVSSSGDPARL 120 Query: 161 VERPKRKTEGIRPWTKED----------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210 V P P + + + R E L G R S++ Sbjct: 121 VPSPALPRRLPHPLAIAQVEALIEAAGRPSTGRDATARALRDRALLEVLYGLGARISEAT 180 Query: 211 RAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPIGKET-----------FFIN 258 V + + K V + ++ L F+ Sbjct: 181 GLDVDDIDAQERAAVLRGKGDKHRVVPVGRFALEALEAYLTRGRPVLAARGTGTPAIFLG 240 Query: 259 NDKQKMNATQFSIWFKAKATKAGV-----NKSAHGVRKFSATISADAGATAHELMATYGW 313 + ++ + A A + S H +R AT GA + G Sbjct: 241 SRGTRLTRQAAWQVVQRAADAAELSDLPEPISPHTLRHSYATHLLHGGADVRAVQELLGH 300 Query: 314 KTVDQAETYT 323 +V + YT Sbjct: 301 ASVTTTQLYT 310 >gi|67925842|ref|ZP_00519134.1| Phage integrase:Phage integrase, N-terminal SAM-like [Crocosphaera watsonii WH 8501] gi|67852313|gb|EAM47780.1| Phage integrase:Phage integrase, N-terminal SAM-like [Crocosphaera watsonii WH 8501] Length = 290 Score = 99.4 bits (246), Expect = 6e-19, Method: Composition-based stats. Identities = 46/258 (17%), Positives = 90/258 (34%), Gaps = 12/258 (4%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRKH 128 LI+ + + +R ++S Q IR G ++ + I +E + + Sbjct: 11 SELITTWLLHQS----SKLTRQHYQSNIKQFIRFIG-LSLEEVKIEDINGFVRMLELKGN 65 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 PS+ L++++ LF +A + Y+ N + V+ PK + + + + Sbjct: 66 KPSTIKGKLSTVKSLFSFAYKVGYLTSNVTVLVKSPKVNKRTASMRIEHEDIRKMVDGTN 125 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--ITVELPDGFMKLLA 246 + RL + + + GLR S+ R N I + E + L Sbjct: 126 SKRDRLIIKMMFFLGLRVSEVLRLKWSDFYQNKVFISGKGNKERSLNLPEELFLELSELK 185 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATA 304 F +++ +I + G++ H R + S D G Sbjct: 186 SEFNPTFVFTAYQKDEQLKRQAVNIMLNRLKKRLGIDANIHPHKFRHEHSMTSLDNGCDI 245 Query: 305 HELMATYGWKTVDQAETY 322 H L + G +V E+Y Sbjct: 246 HLLSRSLGHGSVSITESY 263 >gi|325270579|ref|ZP_08137179.1| integrase [Prevotella multiformis DSM 16608] gi|324987155|gb|EGC19138.1| integrase [Prevotella multiformis DSM 16608] Length = 407 Score = 99.4 bits (246), Expect = 6e-19, Method: Composition-based stats. Identities = 38/310 (12%), Positives = 101/310 (32%), Gaps = 23/310 (7%) Query: 54 STPKREYINSPRKKPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKS---- 106 R + ++ TT + ++ + +++ +S + Sbjct: 92 LDKIRSFFVGKDREYTTFLPIFDKFNEDVRQRVGHTISKDSLQKYSVLRRHFAEFLIYKY 151 Query: 107 GDFD--YRKITTKHIRSGVESR----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 G D + T ++ +++++ L +++ + +A ++ Y+ +P L+ Sbjct: 152 GKKDIGLAEFTPSVVQDFELYLSTAAGCAYNTSVKKLKALKTVTIYAQKRGYLLHDPFLN 211 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHL 217 + T E++ + + + R F F ++GL D ++ Sbjct: 212 HRF-HLEPVNRGFLTDEEIMKIANKDLAIQRLELVRDVFIFSCFTGLAYIDVSNLTPDNI 270 Query: 218 QNNIFSIKTQKTGTIITVELPDGFMKL--LAMTPIGKETFFINNDKQKMNATQFSIWFKA 275 +VE + + +T G +T+ + + + + K Sbjct: 271 VTLDDKQWIMTKRQKTSVETNVLLLDIPKRIITKYGHKTYRDGKLLPVLTNQKINAYLKE 330 Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI--RL 331 A G+ K + H R AT+S G + G + + Y + ++ Sbjct: 331 IADLCGIKKRLTFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKIEHD 390 Query: 332 GIKNSRRISS 341 + + ++S Sbjct: 391 MEELAGKLSK 400 >gi|326789890|ref|YP_004307711.1| integrase family protein [Clostridium lentocellum DSM 5427] gi|326540654|gb|ADZ82513.1| integrase family protein [Clostridium lentocellum DSM 5427] Length = 350 Score = 99.4 bits (246), Expect = 6e-19, Method: Composition-based stats. Identities = 43/296 (14%), Positives = 104/296 (35%), Gaps = 7/296 (2%) Query: 45 PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR 104 A+ E K LK + + + + SL+ +++ S F+++ Sbjct: 52 EKRTDAIAALAKYNENPYDISTKKIKLKDIYERWCNTTDFISLSDSTKKSHALAFNKLEN 111 Query: 105 KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164 + + K+ T ++ ++ TP+ +Q + L+ +A + + V N ++ Sbjct: 112 AH-NMPFSKLNTNTLQILIDETGSTPTVKLQIKKLLGNLYLYAEKYDIVTKNYSKFIDVG 170 Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 ++ R + + ++ + F+LY+G R S+ ++++ ++ Sbjct: 171 DTSSKIERRIYTHEEIEKLWNNLAENKWIDSILFMLYTGFRVSEMLELKIENIDLENLTM 230 Query: 225 KTQKTGT--IITVELPDGFMKLLAMTPIGKETF-FINNDKQKMNATQFSIWFKA-KATKA 280 K T+ + + ++ + F KM A + + F + Sbjct: 231 SGGKKTAAGKRTIPIHSKIVDIVKNRYDENYEYLFRTQKGTKMTADSYRVSFYNPIMEQL 290 Query: 281 GVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIK 334 + S H +R + A L G T D + YT D ++ ++ Sbjct: 291 NLTGSGCHDLRHTFCSKMDSYNINATTLKRIMGHSTKDVTDIYTHKTIDDLKEAVE 346 >gi|221328640|ref|YP_002533482.1| Tyrosine integrase [Salmonella phage epsilon34] gi|193244708|gb|ACF16647.1| Tyrosine integrase [Salmonella phage epsilon34] Length = 387 Score = 99.4 bits (246), Expect = 6e-19, Method: Composition-based stats. Identities = 48/358 (13%), Positives = 103/358 (28%), Gaps = 57/358 (15%) Query: 17 RHGK-IIYYFRKGHGRRIRLP-YPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 R G+ + G+RI+ + + + + T Sbjct: 5 RRGEIWYASYSTPGGKRIKESLGTSDKRLATELHDKRKAELWRVDRLGDF--PDVTFDDA 62 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---- 130 + + S S + + +T + I V + Sbjct: 63 CMRWLEEKAEKK----SLKDDRSRMAFWLAHFEGVRLKDVTEQKIYLAVNKMSNRKQLEI 118 Query: 131 -------------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165 S+ + L M+ + + A +++ + ++ P Sbjct: 119 WKIKAAAAQKNGEPAPIYSAKPVKTSTKAKHLALMKAILR-AAERDWKWLEKAPVIKVPA 177 Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----I 221 + + +R KE+ ++ E + +F L +GLR S+ Q + Sbjct: 178 VRNKRVRWLEKEEAKRLIDECPE--PLKSVVKFALATGLRRSNIINMEWQQIDMQRRVAW 235 Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------------F 269 + + K+ I V L D K+L + + K+ + Sbjct: 236 VNPEDSKSNRAIGVALNDTACKVLREQIGKHHKWVFVHTKEGIRPDGSKTPTIRKMRVDD 295 Query: 270 SIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 + A +AG+ + H +R A+ +G L GW+++D Y A Sbjct: 296 QRAWNAACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIDMVRRYAHLA 353 >gi|27804830|gb|AAO22873.1| integrase [Myxococcus xanthus] Length = 209 Score = 99.4 bits (246), Expect = 6e-19, Method: Composition-based stats. Identities = 32/156 (20%), Positives = 52/156 (33%), Gaps = 14/156 (8%) Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLLAM 247 G + + E L +GLR S+ C G+ +Q + + G V L ++ + Sbjct: 29 GVRDKAMLEVLYATGLRVSELCGLGINDVQLTAGYLVAKGKGAKERLVPLGSVAIEKVQA 88 Query: 248 T----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSAT 295 + F+ F K A KAG+ S H +R AT Sbjct: 89 YLAESRPAVLGRRKSQALFVTPRGSGFTRQGFWKLLKRYALKAGILKPLSPHKLRHSFAT 148 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 + GA + G + + YT + RL Sbjct: 149 HLVERGADLRAVQQMLGHADLATTQIYTH-VNAARL 183 >gi|66044739|ref|YP_234580.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas syringae pv. syringae B728a] gi|63255446|gb|AAY36542.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas syringae pv. syringae B728a] Length = 320 Score = 99.4 bits (246), Expect = 6e-19, Method: Composition-based stats. Identities = 39/271 (14%), Positives = 79/271 (29%), Gaps = 31/271 (11%) Query: 89 VNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRKHTP---SSAIQFLTSMRV 142 +R ++++ + G + +T H+ + +H ++ + L ++ Sbjct: 39 PRTRRAYQNDLEDFCGFVGLVSADEFRVVTRSHVLAWRAQLEHRGLAGATIRRKLAALAS 98 Query: 143 LFKWAVRQEYV---AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLA 195 LF + + + + + + E G + R Sbjct: 99 LFDHLLESNAIAGGNPVHGVKRPKIESNEGKTPALGDHQAKALLDAPDETTLKGQRDRAI 158 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---------------IITVELPDG 240 LLY GLR ++ V +Q + G I + L Sbjct: 159 LAVLLYHGLRREEAALLQVSDIQERRGIQHLKVHGKGGKVRYLPLHPVAAGRIHLFLESS 218 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATIS 297 L + A A A KAG+ HG+R +AT + Sbjct: 219 GHHLADRKVPLFMPLRGKLTGAGITANGIYTVVAAYAKKAGIEVDGLGVHGLRATAATNA 278 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADR 328 + A ++ A G + + Y + +R Sbjct: 279 LEHEADIAKVQAWLGHANISTTKIYDRRENR 309 >gi|303328556|ref|ZP_07358991.1| site-specific recombinase, phage integrase family [Desulfovibrio sp. 3_1_syn3] gi|302861322|gb|EFL84261.1| site-specific recombinase, phage integrase family [Desulfovibrio sp. 3_1_syn3] Length = 287 Score = 99.4 bits (246), Expect = 6e-19, Method: Composition-based stats. Identities = 41/280 (14%), Positives = 81/280 (28%), Gaps = 18/280 (6%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--- 126 TL + Y + H Y + I T I+ Sbjct: 3 TLDEAWNSYLATRHLTPY--GYLTDMSRYRVHLQTYWHGKTLTSIKTLDIQFYTNHLFEK 60 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 +P + L +R + + A R + P +E + Sbjct: 61 GLSPQTVRLCLGQLRRIMRRAHRLGLLEGQLPYFEMPPADSVRYRYLEPEEATSLLQVLR 120 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246 + L +G+R S+ ++ +I KT + +P L Sbjct: 121 NLSQLWHDIALLSLNTGMRASEIFSLRGANINVPQENIILHKTKNLKQRIVPLNSPSLNI 180 Query: 247 MTPIGKETFFINNDKQKMNATQF---SIWFKAKATKAGVNKS---------AHGVRKFSA 294 + ++ + +++ + QF S F+ +G+N+ H +R A Sbjct: 181 VKKYHRKNAELLFHQEESSNKQFVKISKKFRRAVEISGLNEGIIDNRYRVVFHTLRHTFA 240 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGI 333 + G + + G +V E Y A D+ R + Sbjct: 241 SWLVQRGVSLQVVSNLLGHSSVRVTERYAHLAPDQGRNAL 280 >gi|254431901|ref|ZP_05045604.1| integron integrase [Cyanobium sp. PCC 7001] gi|197626354|gb|EDY38913.1| integron integrase [Cyanobium sp. PCC 7001] Length = 325 Score = 99.4 bits (246), Expect = 6e-19, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 83/302 (27%), Gaps = 47/302 (15%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----KHT 129 LI YR+ A + ++E + + +R R++ + + S + + + Sbjct: 12 LIQRYREELQTRHYARRTVKTYELWLRRFLRFHNLRHPREMGSAEVNSFLTHLAVDLQVS 71 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER-------------------------- 163 PS+ Q L ++ L++ + ++ + R Sbjct: 72 PSTQNQALAALLFLYRELLDRDLELDGVVRARNRRRLPVVLSEAEVRAVRDHLEGDPALV 131 Query: 164 ----------PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213 + ++ +G + RL Sbjct: 132 VGLLYGSGLRLMEALRLRVKDLDFERRELSVRDGKGGKDRLTLLPQSLVADLKHHLLGVR 191 Query: 214 VQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND-----KQKMNATQ 268 H + + + P+ + +E + + + ++ + Sbjct: 192 RLHRLDLAAGWGQVLMPHALARKYPNAAREWAWQWVFPQEHRWHDRTSGTQGRHHLDPSL 251 Query: 269 FSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 K T AGV+K S H R AT + G + G K V YT Sbjct: 252 VQKAVKRAVTAAGVSKAASCHTFRHSFATHLLERGQDIRTIQELLGHKDVSTTMIYTHVL 311 Query: 327 DR 328 +R Sbjct: 312 NR 313 >gi|154175422|ref|YP_001408733.1| oxygen-independent coproporphyrinogen III oxidase [Campylobacter curvus 525.92] gi|112802099|gb|EAT99443.1| oxygen-independent coproporphyrinogen III oxidase [Campylobacter curvus 525.92] Length = 267 Score = 99.4 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 35/278 (12%), Positives = 87/278 (31%), Gaps = 21/278 (7%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSS 132 +++++ +L+ N+ ++ Q + Y ++ +++++ ++P + Sbjct: 2 MTQFKTYLTNKNLSQNTIFAYLFALKQFLD-----RYDDVSRQNLQAYKLYLIENNSPKT 56 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 L ++ + + + + + + + K + Sbjct: 57 VNLRLRAINCYLQSIKKPKLQLSFVKVQQKSFLQNVISKADYEYFKACLLKDGHK---KW 113 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL---PDGFMKLLAMTP 249 FL +G+R S+ + +H+ F I ++ K L Sbjct: 114 YFVVRFLAATGVRVSELVKFKAEHVVLGYFDIYSKGAKMRRIYIPKSLQASAKKWLDEIG 173 Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHE 306 I F+N + + + K A G+++S H R A + Sbjct: 174 IKSGFIFLNRFSKPITPRGIASELKKFARIYGLDQSVIYPHSFRHLFAKNFLASCNDIAF 233 Query: 307 LMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 L G ++ Y + R + I SV+D Sbjct: 234 LADLMGHTSIQTTRIYLR-----RTAAEQRDLIDSVID 266 >gi|134298247|ref|YP_001111743.1| phage integrase family protein [Desulfotomaculum reducens MI-1] gi|134050947|gb|ABO48918.1| phage integrase family protein [Desulfotomaculum reducens MI-1] Length = 304 Score = 99.4 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 40/285 (14%), Positives = 88/285 (30%), Gaps = 29/285 (10%) Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESR 126 T + L+ + +L+ + ++ +++I + +TT R V S Sbjct: 1 MTNQELVKTFLMYQETKNLSKRTIEWYQFTLNKLIDYCKENNISIESMTTPQARQYVFSL 60 Query: 127 KHTPSS---------AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 + + S ++ S++++F + EY+ NP V++ K I + E Sbjct: 61 QKSISRTGKKYADNGINGYIRSVKIMFNYLFEDEYIEKNPFAKVKQIKTDKVIIETFEVE 120 Query: 178 DMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTI 232 ++++ + + + L + L +G+R S++ + + + K Sbjct: 121 EVKRMLNQFNKKVYTEFRDALLIQILYDTGIRISEAINLKISDIDTDKNMFKVFGKGHKE 180 Query: 233 ITVELPDGFMKLLAMTPIGKE----------TFFINNDKQKMNATQFSIWFKAKATKAGV 282 V + + + F + + TKA + Sbjct: 181 RMVPFGRSIKREILKYLPKRNKEVDKELDEGYLFSTRNGTALTIRNVHRKIVEVGTKAKI 240 Query: 283 N---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 SAH R A G L G + Y Sbjct: 241 KGKRLSAHTFRHTFAKTYLVNGGNLFSLQTIMGHNDLSTTRKYVH 285 >gi|330974049|gb|EGH74115.1| phage integrase family site specific recombinase [Pseudomonas syringae pv. aceris str. M302273PT] Length = 320 Score = 99.4 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 40/271 (14%), Positives = 80/271 (29%), Gaps = 31/271 (11%) Query: 89 VNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRKHTP---SSAIQFLTSMRV 142 +R ++++ G +T H+ + +H ++ + L ++ Sbjct: 39 PRTRRAYQNDLTDFSSFIGLASADDFRLVTRSHVLAWRADLEHRGLAGATIRRKLAALAS 98 Query: 143 LFKWAVRQEYV---AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLA 195 LF + + + + + + E G + R Sbjct: 99 LFDHLLENNAIAGGNPVHGVKRPKIESNEGKTPALGDHQAKALLDAPDESTLKGLRDRAI 158 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---------------IITVELPDG 240 LLY GLR ++ + V +Q + G I + L Sbjct: 159 LAVLLYHGLRREEAAQLQVSDIQERRGIQHLKIHGKGGKVRYLPLHPVAAGRIHLYLERS 218 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATIS 297 L ++A +A A KAG+ HG+R +AT + Sbjct: 219 GHHLDDKKVPLFIPLRGKPTGAGVSANGIYTVVEAYAKKAGIEVAGLGVHGLRATAATNA 278 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADR 328 D A ++ A G + + Y + +R Sbjct: 279 LDHEADIAKVQAWLGHANISTTKIYDRRENR 309 >gi|260583149|ref|ZP_05850930.1| prophage integrase [Haemophilus influenzae NT127] gi|260093861|gb|EEW77768.1| prophage integrase [Haemophilus influenzae NT127] Length = 341 Score = 99.4 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 40/324 (12%), Positives = 103/324 (31%), Gaps = 22/324 (6%) Query: 14 ERTRHGKIIYYFRKGHGRRIR-LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 + ++G F G R+R + L + + +N +K T++ Sbjct: 4 RKNKNGVWQIDFTTPSGERVRCSSKTTDKKLAQHLHDKLKHEAWQVDQLN--KKPEKTVE 61 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS------GVESR 126 + K A ++ + + G+ +T++ I++ + Sbjct: 62 QALILLLKDAEHKKDK----LTKIQHAKYWRDEIGNKLLSSLTSEDIQNAIPTHVVRTGK 117 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 +P++ ++ +S+ A + ++ + P ++ + + W E + Sbjct: 118 ILSPATQNRYRSSIMRAINLAKQAGWIDVVPYIAK---NSEPKKRIRWITEKEAERLLDS 174 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----TIITVELPDGFM 242 + + +F L +G R ++ + ++ L D + Sbjct: 175 LNLNWMKDVCQFALLTGARMTEILSMTWDKINFANKMAIVTGDIAKSGRGRSLPLSDDAI 234 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIW-FKAKATKAGVN-KSAHGVRKFSATISADA 300 L+ + + ++ + S FK +A + H +R A+ Sbjct: 235 NLIKERMKYQVSPYVFHSGTGKLRDDISRRDFKRALQRANIKNFRFHDLRHTWASWHIQR 294 Query: 301 GATAHELMATYGWKTVDQAETYTK 324 G L GW+T++ + Y Sbjct: 295 GTPLMVLKELGGWETIEMVQKYAH 318 >gi|291295791|ref|YP_003507189.1| integrase family protein [Meiothermus ruber DSM 1279] gi|290470750|gb|ADD28169.1| integrase family protein [Meiothermus ruber DSM 1279] Length = 374 Score = 99.4 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 46/348 (13%), Positives = 102/348 (29%), Gaps = 31/348 (8%) Query: 17 RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76 + G+ + G+G + ++ R + L + Sbjct: 15 KDGRWAAFVTIGYGPDGKQRKRWVYGRTRREVAEALARLLPRAGYGLIQPTRLRLGEWLE 74 Query: 77 EYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAI 134 + L ++ ++ +Y Q+++ +++ IR+ +PS+ Sbjct: 75 RWADERARSKGLRPSTVQNYRNY-QQLLKPLAATPLTRLSPLAIRARFAELAELSPSTRR 133 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194 +R + AVR + NP +V+ P T + ++G + Sbjct: 134 HLYQFLRAALRDAVRVGLLEANPMDAVDPPTGGTVRPPRAWNREQVSAFLAAAQGHRLYP 193 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII--------------------- 233 F +L +GLR ++ Q Q I+ T Sbjct: 194 MFYVMLTTGLRIGEAMALRWQDWQGEKLWIRHTLTKQRTLGPTKTLGSSAPIYLDLATQT 253 Query: 234 ---TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGV 289 + A + + F + ++ F+A +A V + HG+ Sbjct: 254 ILSEHRTRQAEERATAKRWLDHDLIFPSEVGTPLSYRNVMRTFQALTEQAKVPRIGLHGL 313 Query: 290 RKFSATISADAGATAHELMATYGWKTVD-QAETYTK--GADRIRLGIK 334 R +++ AG + ++ K Y DR + + Sbjct: 314 RHTYTSMALQAGLSPKQVADRLRHKDPALTLRIYQHLQEEDRRQAALN 361 >gi|168778124|ref|ZP_02803131.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. EC4196] gi|187766816|gb|EDU30660.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. EC4196] Length = 359 Score = 99.4 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 57/335 (17%), Positives = 101/335 (30%), Gaps = 40/335 (11%) Query: 6 RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65 +LPP V + + P ES + A L K E + R Sbjct: 12 KLPPKVY---------------PNKYSVWKPTSRESVTLTAIEDGLAALWKKYEETVNHR 56 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 + T L ++ SA++ L+ ++ + + +++ G + +HIR ++ Sbjct: 57 DRAMTFGRLWEKFLASAYYSELSPRTQKDYLQHQKKLLAVFGKVLADSVKPEHIRRYMDK 116 Query: 126 RK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 R + + A +SM ++ W + YV NPC V + K K KE Sbjct: 117 RGEQSKTQANHEKSSMSRVYSWGYERGYVKANPCAGVSKFKAKNRERYVTDKEYQAVLSV 176 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 +A E R SD + + N+ I+ KTG Sbjct: 177 AP---LPVFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAA 233 Query: 245 LAMTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAGV------NKSAHGVRKFSATI 296 + N + F+ + AG + + H + Sbjct: 234 IEKAKQLPTSAYVISNQYGNRYMYKGFNEMWVEARNHAGKMSGILTDFTFHDL------- 286 Query: 297 SADAGATA-----HELMATYGWKTVDQAETYTKGA 326 G + + G KT Q Y + Sbjct: 287 -KAKGISDYEGSSRDKQLFSGHKTEGQVLIYDRKV 320 >gi|325854096|ref|ZP_08171486.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] gi|325484207|gb|EGC87139.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] Length = 410 Score = 99.4 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 38/312 (12%), Positives = 99/312 (31%), Gaps = 25/312 (8%) Query: 54 STPKREYINSPRKKPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKS---- 106 R + ++ TT + ++ + +++ +S + Sbjct: 92 LDKIRSFFVGKDREYTTFLPIFDKFNEDVRQRVGHTISKDSLQKYSVLRRHFAEFLIYKY 151 Query: 107 GDFD--YRKITTKHIRSGVESR----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 G D + T ++ +++++ L +++ + +A ++ Y+ +P L+ Sbjct: 152 GKKDIGLAEFTPSVVQDFELYLSTAAGCAYNTSVKKLKALKTVTIYAQKRGYLLHDPFLN 211 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHL 217 + T E++ + + + R F F ++GL D ++ Sbjct: 212 HRF-HLEPVNRGFLTDEEIMKIANKDFAIQRLELVRDVFIFSCFTGLAYIDVSNLTPDNI 270 Query: 218 QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--NATQFSIWFKA 275 +VE + + + K + + + K Sbjct: 271 VTLDDKQWIMTKRQKTSVETNVLLLDIPKSIIAKYSHKTYRDGKLFPILTNQKTNAYLKE 330 Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 A GV K + H R AT+S G + G + + Y + ++ I Sbjct: 331 IADLCGVKKNLTFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKK---I 387 Query: 334 KN-SRRISSVVD 344 ++ +++ +D Sbjct: 388 EHDMEQLAGKLD 399 >gi|168213143|ref|ZP_02638768.1| site-specific recombinase, phage integrase family [Clostridium perfringens CPE str. F4969] gi|170715456|gb|EDT27638.1| site-specific recombinase, phage integrase family [Clostridium perfringens CPE str. F4969] Length = 363 Score = 99.4 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 39/345 (11%), Positives = 89/345 (25%), Gaps = 33/345 (9%) Query: 26 RKGHGRRIRLPYPHESTFIP--AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83 + G + A + + T+ + Y + Sbjct: 26 KTGKWKEKSKQGFKTKKLAKLGADKLLTQLKEELERNKDIVGDENVTVGEMKKVYLEHIQ 85 Query: 84 -WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES---RKHTPSSAIQFLTS 139 + + N+ S + D +++ I+ ++ RK +P++ + +T+ Sbjct: 86 TYRTF--NTYKSTRAALSNF--DLDDTKLTELSIIDIQKCIDKLTARKLSPTTVKRRVTA 141 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRK---TEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196 R + K+A Q + I + P++K ++ E K + Sbjct: 142 FRTMLKFAHSQYGLPIPNLELLVLPEKKDLTSKRRAMDKHEINFLLKHMKMKHYNYYRVC 201 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-----------------ITVELPD 239 +G+R + + I K + + Sbjct: 202 VVAANTGMRLGEVLGLTWDCVDWENAIITVNKQWKELDKGVFGFGELKSKNSYRKIPVTR 261 Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISAD 299 F+ L + N + K + + S H R AT Sbjct: 262 SFLDTLREIKSINKGSLDNRVIDNFDNYLSLCVNINKCIRRNYDISMHDFRHSFATRLIH 321 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 G G Y+ D ++ ++++ D Sbjct: 322 EGLDFKTTAKILGHDVEQTIRVYSHVTDE---MMEKAKKVIGEFD 363 >gi|167628727|ref|YP_001679226.1| phage integrase [Heliobacterium modesticaldum Ice1] gi|167630972|ref|YP_001681471.1| phage integrase [Heliobacterium modesticaldum Ice1] gi|167591467|gb|ABZ83215.1| phage integrase [Heliobacterium modesticaldum Ice1] gi|167593712|gb|ABZ85460.1| phage integrase [Heliobacterium modesticaldum Ice1] Length = 341 Score = 99.4 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 36/312 (11%), Positives = 89/312 (28%), Gaps = 41/312 (13%) Query: 67 KPTTLKWLISEYRKS--AHWGSLAVNSRISFESYFDQIIRKS--------GDFDYRKITT 116 KP+ + +++Y + + + N+ ++ F ++R + + Sbjct: 2 KPSDFAYALTKYLSAYLPGQCNASENTVRAYRDTFKLLLRFADTQRGICPERLTLADVDK 61 Query: 117 KHIRSGVESR----KHTPSSAIQFLTSMRVLFKWAVRQ---EYVAINPCLSVERPKRKTE 169 + + + S+ L + F++ + + LS+ + Sbjct: 62 SFVEGFLSWLETVQGNAVSTRNHRLAGIHAFFRYLQSEKPDMMLQCQQVLSIPVKRTVKP 121 Query: 170 GIRPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225 + T + ++ + G + L +G R S+ + L+ + Sbjct: 122 TVNYLTVDAVKTILAMPDTSTVYGMRDLALLGLLYDTGARVSELIELRPKDLRLAAPPVV 181 Query: 226 --TQKTGTIITVELPDGFMKLLAMTPIGK---------ETFFINNDKQKMNATQFSIWFK 274 K L L F+ ++ +K+ + Sbjct: 182 TLFGKGRKSRQCPLSSEMTGHLVKYLSAWGLDAPAKSDHPLFVGHNAEKLTRAGVAYILS 241 Query: 275 AKATKAGVN--------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG- 325 A+ A S H +R A AG + G +V E Y + Sbjct: 242 KYASAAREKDASIIPTIVSPHMLRHSKAMHLLQAGVNLVYIRDWLGHASVKTTEIYARAD 301 Query: 326 ADRIRLGIKNSR 337 ++ R ++ + Sbjct: 302 SEMKRAALQKAA 313 >gi|125973032|ref|YP_001036942.1| phage integrase [Clostridium thermocellum ATCC 27405] gi|125713257|gb|ABN51749.1| phage integrase [Clostridium thermocellum ATCC 27405] Length = 506 Score = 99.4 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 51/343 (14%), Positives = 101/343 (29%), Gaps = 55/343 (16%) Query: 47 YMSALTGSTPKREYINSPRKKPTT--LKWLISEYRKSAHWGSLAVNSRISFESYFDQ-II 103 Y L +P + + E+ + + + S+ S Q II Sbjct: 149 YAIELGWIESNPAKGINPATDEVSVLFVDFLLEWLEMMRTR-VRETTYASYNSGIRQSII 207 Query: 104 RKSGDFDYR----KITTKHIRSGVES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN 156 D + K+++ + + +P+S ++ ++R + A + N Sbjct: 208 PYFMDKKLTLTDIEENPKYLQDFYQHELSKGLSPNSVLRRHANIRKALQHAFHLGLIKSN 267 Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216 P +ERPK++ +T E++ + ++G L Y GLR S+ Sbjct: 268 PADRIERPKKQDYTASYYTDEELAK-LFKAAKGDPLELPIVLAAYYGLRRSEIIGLRWDA 326 Query: 217 LQNNIFSIKTQKTG-------------------------TIITVELPDGFMKLL------ 245 + N K + T+ L LL Sbjct: 327 IDFNPDDPKITIQFTVTEVNFGDGQGNVIIEKEGTKSKASKRTLPLVKPIADLLLQKKKD 386 Query: 246 ----------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSA 294 + +N ++M S F K G+ K H +R A Sbjct: 387 IENNRRLCGSCYNDKYLDFVHVNEIGERMKPNYISQHFALLLEKHGLKKIRFHDLRHSCA 446 Query: 295 TISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNS 336 ++ G + ++ G + YT ++ N+ Sbjct: 447 SLLYANGVSLKQIQEWLGHSDISTTANIYTHLDYNSKIATANA 489 >gi|328947550|ref|YP_004364887.1| integron integrase [Treponema succinifaciens DSM 2489] gi|328447874|gb|AEB13590.1| integron integrase [Treponema succinifaciens DSM 2489] Length = 410 Score = 99.4 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 28/92 (30%), Gaps = 2/92 (2%) Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296 + L K + ++ + K +AG+NK S H R AT Sbjct: 307 FKWQWLFPQKNRWKNPQTGEEGRWHLDESLMQRAVKQAILEAGINKNASCHTFRHSFATH 366 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADR 328 + G + G V YT +R Sbjct: 367 LLENGYDIRTIQELLGHSDVSTTMIYTHVLNR 398 >gi|293371862|ref|ZP_06618267.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|292633168|gb|EFF51744.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] Length = 385 Score = 99.4 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 36/317 (11%), Positives = 95/317 (29%), Gaps = 24/317 (7%) Query: 53 GSTPKREYINSPRKKPTTLKWLISEY---RKSAHWGSLAVNSRISFESYFDQIIRKSG-- 107 + +E + K TTL + E+ + ++ +S ++ + G Sbjct: 67 EAKDVKEALQGSVKTQTTLLSFVDEHISELSTHEGIDMSKSSVWTYRKIRKNLAEFIGEK 126 Query: 108 ----DFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159 D + ++T I + + + + +++ + + + A + Sbjct: 127 YRLTDLAFGQLTEPFISDFHHYLLDEKGFSSGTITIYVSLFKKMCRIAFERGLCKNLLFA 186 Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219 K + + D + + +PRL+ L+ + + + Sbjct: 187 HYRVGTPKVTTPKALSMSDFIKIRDVELPEDKPRLSVSRDLFLFACYAGTAFIDTVSITK 246 Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN------ATQFSIWF 273 + ++ G + + + P E D + + I Sbjct: 247 ANVKVLEDGDKWLVYNRKKTGTLARVKLLPEALELMAKYEDGARDTLFPLLNTNRVRIDL 306 Query: 274 KAKATKAGVNKSA--HGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 A +K+ H R A++ +AG + G K V + Y + + + Sbjct: 307 ITICKLAETSKTYSYHSGRHSFASLITLEAGVPMETICKMLGHKDVKMTQRYARVT-QKK 365 Query: 331 LGIKNSRRISSVVDSDD 347 L ++ + + + D Sbjct: 366 L-FEDMDKFIAATEKDF 381 >gi|255693724|ref|ZP_05417399.1| integrase protein [Bacteroides finegoldii DSM 17565] gi|260620475|gb|EEX43346.1| integrase protein [Bacteroides finegoldii DSM 17565] Length = 391 Score = 99.4 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 39/272 (14%), Positives = 85/272 (31%), Gaps = 18/272 (6%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 K + Y++ SL +++ + S + + + + +T + + S + Sbjct: 106 KSFLDFYKEELATSSLKESTKHNHLSTLELLQAFKKEIFFTDLTFEFVSSFDSYLQSRGY 165 Query: 132 SAIQFLTSMRVLFKW----AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 M+ L ++ ++ R K + E++ + + Sbjct: 166 HLNTIAKHMKHLKRYVNIAINKEYMDIQKYAFRKYRIKSVEGRHTHLSPEELHKLEEVQL 225 Query: 188 EGSQPRL-----AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242 +L AF F Y+GLR SD +++ + Sbjct: 226 TEKFAKLQKPKDAFLFCCYAGLRYSDFTHLTSENIIEFHKEF--WLIYKSVKTGTEVRLP 283 Query: 243 KLLAM-----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSAT 295 L + + +N+ + + + + A AG+ + S H R +AT Sbjct: 284 LYLLFEGKGIHILHRYKNDLNSFFKLKDNSNLNKELNVLAKLAGISKHISFHTARHTNAT 343 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGAD 327 + GA + G K+V + Y D Sbjct: 344 LLIYNGANITTVQKLLGHKSVKTTQVYANIMD 375 >gi|170729640|ref|YP_001775073.1| phage-related integrase [Xylella fastidiosa M12] gi|167964433|gb|ACA11443.1| phage-related integrase [Xylella fastidiosa M12] Length = 339 Score = 99.4 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 54/329 (16%), Positives = 103/329 (31%), Gaps = 23/329 (6%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 P + G + YY+ G R P + + L + Sbjct: 12 PRFRVRPQKSGVVYYYYDHGGKPRKETPLGRDYGLAIKRWAELEHAQITPAI-------A 64 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR 126 T + + YR A +++ Y + +++ D + I +IR ++ R Sbjct: 65 VTFRHVAERYRAEVIPTK-ARSTQQMHHIYLNYLLKFFDDPPAPFESIKPVNIRQYLDWR 123 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + SA + + L+ W + + +R E R +D + Sbjct: 124 -TSKVSANREVALFSHLWNW--ARSKGITDLPNPCGGIRRNKERGRDVYIDDTTYRAVYQ 180 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246 + R A + +G R SD +H+ N I KTG + + + L+ Sbjct: 181 AADQTLRDAMDLAYLTGQRVSDVVNMDERHIVNGALEICQAKTGVKLAIAITGELAVLIK 240 Query: 247 MTPIGKETFFINNDKQKMNATQFS-------IWFKAKATKAGVNK---SAHGVRKFSATI 296 K + + + ++ F+ AG+ K +R +AT Sbjct: 241 RILARKRGMKLRSTRLIVDEKGLGLNWKKLAYRFRKVRAAAGIAKEVFQFRDLRAKAATD 300 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKG 325 AD + A G +V E Y + Sbjct: 301 KADLAGDMRQAQAQLGHASVTMTEHYVRK 329 >gi|34335022|gb|AAQ64997.1| unknown [synthetic construct] gi|301159296|emb|CBW18811.1| bacteriophage integrase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|323131081|gb|ADX18511.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 341 Score = 99.4 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 46/342 (13%), Positives = 93/342 (27%), Gaps = 47/342 (13%) Query: 11 VTKERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 +T + +GK + Y G+R+R A+ + K+ ++ + Sbjct: 1 MTIRKQPNGKWLCECYPSGRDGKRVR-KQFATKGEAIAFENFTMDEVNKKPWLG-EKDDR 58 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVES 125 L +I ++ SL + + + I GD ++T E+ Sbjct: 59 RQLSEVIKQW------HSLYGQTLADPKRLMSKLSIICHGLGDPIASELTAGDFTKYREA 112 Query: 126 R--------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 R P + ++ +F + + + L+ + EG Sbjct: 113 RLKGEVRSEDGALMSPVKPRTVNLEQRNLSSVFGTLKKLGHWSAPNPLAGLPTFKIAEGE 172 Query: 172 RPWTKEDMQQFKSFWSEGSQ---PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228 + D + SQ + + L +G R S++ + + K Sbjct: 173 LAFLAPDEIKRLLDACADSQSPSLLMITKICLSTGARWSEAENLQGHQVSKYRITYTKTK 232 Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---- 284 TV + + T F+ +AG+ Sbjct: 233 GKKNRTVPISQDLYDEIPRNRGKLFTPC-------------RKAFERAIKRAGIELPEGQ 279 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 H +R A+ G L G + Y A Sbjct: 280 CTHVLRHTFASHFMMNGGNILVLRDILGHADIKMTMIYAHFA 321 >gi|71274688|ref|ZP_00650976.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Dixon] gi|71276271|ref|ZP_00652549.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Dixon] gi|71900963|ref|ZP_00683076.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Ann-1] gi|71902016|ref|ZP_00684061.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Ann-1] gi|170730075|ref|YP_001775508.1| phage-related integrase [Xylella fastidiosa M12] gi|71162879|gb|EAO12603.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Dixon] gi|71164420|gb|EAO14134.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Dixon] gi|71728216|gb|EAO30402.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Ann-1] gi|71729268|gb|EAO31386.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Ann-1] gi|167964868|gb|ACA11878.1| phage-related integrase [Xylella fastidiosa M12] Length = 339 Score = 99.4 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 55/329 (16%), Positives = 103/329 (31%), Gaps = 23/329 (6%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 P + G + YY+ G R P + + L + Sbjct: 12 PRFRVRPQKSGVVYYYYDHGGKPRKETPLGRDYGLAIQRWAELEHAQITPAI-------A 64 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR 126 T + + YR A N++ Y + +++ D + I +IR ++ R Sbjct: 65 VTFRHVAERYRAEVIPTK-AYNTQRMHHIYLNYLLKFFDDPPAPFESIKPVNIRQYLDWR 123 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + SA + + L+ W + + +R E R +D + Sbjct: 124 -TSKVSANREVALFSHLWNW--ARSKGITDLPNPCGGIRRNKERGRDVYIDDTTYRAVYQ 180 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246 + R A + +G R SD +H+ N I KTG + + + L+ Sbjct: 181 AADQTLRDAMDLAYLTGQRVSDVVNMDERHIVNGALEICQAKTGVKLAIAITGELAVLIK 240 Query: 247 MTPIGKETFFINNDKQKMNATQFS-------IWFKAKATKAGVNK---SAHGVRKFSATI 296 K + + + ++ F+ AG+ K +R +AT Sbjct: 241 RILARKRGMKLRSTRLIVDEKGLGLNWKKLAYRFRKVRAAAGIAKEVFQFRDLRAKAATD 300 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKG 325 AD + A G +V E Y + Sbjct: 301 KADLAGDMRQAQAQLGHASVTMTEHYVRK 329 >gi|295113292|emb|CBL31929.1| Site-specific recombinase XerD [Enterococcus sp. 7L76] Length = 382 Score = 99.4 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 53/375 (14%), Positives = 119/375 (31%), Gaps = 43/375 (11%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP---- 64 +V + G + +R + ++ + +A + + + Sbjct: 11 KYVFSYSNKKG-TFWGYRYPYYNSLKHRKETSKRGFESERAANKALLKIQYDLETQNTSF 69 Query: 65 -RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKI-----TTK 117 K T+ I + A + +V+++ + ES I G+ + + Sbjct: 70 IENKQLTIDEWIKVWIPYAQ-DNWSVSTKQNIESAIKFHISPLIGNQKLSSLNKITYKRE 128 Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 I + K+T S+ + + + AV + + N + KE Sbjct: 129 FIDKLRQENKYTESTIQTWHKIVMRMINAAVHNQIIPSNTLTGFKF-DLSNNVRSFSKKE 187 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI------------K 225 + +E Q ++ F LL SG+R + + N K Sbjct: 188 LQRFIAVLENEDIQTQVIFLTLLKSGMRKGELMGLRWSDIDLNEKYFDINSTRGDYGENK 247 Query: 226 TQKTGTIITVELPDGFMKLLAMTPIG--------------KETFFINNDKQKMNATQFSI 271 + +I V + + L+ K+ F +++ + ++ + Sbjct: 248 PKTKTSIRKVYFDNSLLTLIKKYKNHEKERLFREGIILSDKDYFILSSRNLPIKQSRITY 307 Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA-DR 328 F+ KA V N + HG+R AT +AGA + G K ++ + Y+ + Sbjct: 308 MFRLLCEKAEVQNITVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVYSDVLKEE 367 Query: 329 IRLGIKNSRRISSVV 343 + ++ + Sbjct: 368 EKETADMMDKLIENL 382 >gi|255527476|ref|ZP_05394346.1| integrase family protein [Clostridium carboxidivorans P7] gi|296187574|ref|ZP_06855969.1| phage integrase [Clostridium carboxidivorans P7] gi|308390320|ref|YP_003933773.1| putative integrase/recombinase [Clostridium carboxidivorans P7] gi|255508819|gb|EET85189.1| integrase family protein [Clostridium carboxidivorans P7] gi|296048096|gb|EFG87535.1| phage integrase [Clostridium carboxidivorans P7] gi|308066827|gb|ADO12131.1| putative integrase/recombinase [Clostridium carboxidivorans P7] Length = 295 Score = 99.4 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 38/267 (14%), Positives = 77/267 (28%), Gaps = 18/267 (6%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSG---VESRKH 128 + E+ + + + Q IR D I +K I + R Sbjct: 28 IAQEFIIKKIDEGKRTETIKGYFNDLIQFIRYLEIKGVDLFNIDSKEIELFKGKMLRRGL 87 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 P S + LTS+ K + + ++ + + + Sbjct: 88 KPKSINRKLTSINQFLK-------SIDSQVKFRKIKEQSQNFLNDVFTREEIERLIKCCS 140 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---ITVELPDGFMKLL 245 + + L +G+R S+ + V+ + I+ + I+ EL + L Sbjct: 141 NIRDKAIISTLWKTGIRVSELLQLKVRDVGKESIDIEGKGGKHRDILISNELNKLLKEYL 200 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGA 302 + + + + A A + K H R AD G Sbjct: 201 KVRISVPGNELFTGKRGALKRGAINKIILKYAKLAKIRKEKAHPHSFRHAFCKALADNGV 260 Query: 303 TAHELMATYGWKTVDQAETYTKGADRI 329 + + G K++D YT+ + Sbjct: 261 SIDIIADLAGHKSLDTTRIYTRHTKKE 287 >gi|169826079|ref|YP_001696237.1| prophage Lp3 protein 1, integrase [Lysinibacillus sphaericus C3-41] gi|168990567|gb|ACA38107.1| prophage Lp3 protein 1, integrase [Lysinibacillus sphaericus C3-41] Length = 390 Score = 99.4 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 52/395 (13%), Positives = 119/395 (30%), Gaps = 57/395 (14%) Query: 1 MTPSLRLPPFVTKERTRHGKIIYYF------RKGHGRRIRLPYPHESTFIPAYMSALTGS 54 M P + ++G+ Y F G++ R T A AL Sbjct: 1 MAKKKVSP--IKSYELKNGETRYEFPVYLGIDPLTGKQKRTMKRGFKTHKQA-ELALARI 57 Query: 55 TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSR-ISFESYFDQIIRKSGDFDYRK 113 + + T + L + ++ ++ + + + I+ ++ K Sbjct: 58 KLDVANGTYKQARAETYQELYDLWIPHYE-KTVEESTFTKTVGIFRNHILPAMREYKIDK 116 Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 IT + V+ + +A+++ Y+ NP V+ P ++ + Sbjct: 117 ITVDVCQKHVDKWAEKLKKFRVVKAYAAKVLDFAIKRGYMQTNPFTHVDMPIAASKKVTI 176 Query: 174 WTKEDMQQFKSFWSE-----------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222 +E+ + F + + F L +SG+R ++ L Sbjct: 177 IEEEEAENFYTREQLIQFLACLEQENNYKAYALFRLLAFSGMRKGEALALTWNDLNFTTN 236 Query: 223 SIKTQKTGTI----------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA 266 ++ K + T+++ D M +L ++ ++ M Sbjct: 237 EMRINKALSRGKNNKLYVKSTKTGFARTIKMDDKTMAILKEWKKKQKQEYLVLGFNTMQP 296 Query: 267 TQF---------------SIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMAT 310 Q W K + + HG+R ++ +AGA+ E+ Sbjct: 297 KQLVFSNERNEFLQPTKTRKWILHVQKKYKLGTITTHGLRHTHCSLLFEAGASLKEVQDR 356 Query: 311 YGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVVD 344 G V Y + + ++ +S ++ Sbjct: 357 LGHSDVQTTMNIYAHVT--KKAKEEAIQKFASYLE 389 >gi|241888620|ref|ZP_04775927.1| integrase [Gemella haemolysans ATCC 10379] gi|241864643|gb|EER69018.1| integrase [Gemella haemolysans ATCC 10379] Length = 367 Score = 99.4 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 43/355 (12%), Positives = 104/355 (29%), Gaps = 39/355 (10%) Query: 11 VTKERTRHGKIIYY----------FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60 + + YY G +RI Y + Sbjct: 2 IKEYINSKDNKKYYEVKNEYLGKNVYTGKEKRISKKGFRTKREAQNY--IVKAKNEFLNG 59 Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHI 119 + + T + + H + +S + ++ +I+ + I + Sbjct: 60 SVFLQSENITFGHVYKLW-DEQHKTQVKESSYHTIKTILDKRILPVFRELKIINIKLPYY 118 Query: 120 RSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 ++ + + + +++ + +AV+ E + N + PK+ E + + + Sbjct: 119 QNYINEVSKTYKKGYVTLIKSTIVQILDYAVKMEIIPTNYMKLTKVPKKIEEKKKNYYTK 178 Query: 178 D---MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---- 230 + S+ +AF L ++G+R + + + ++ K Sbjct: 179 KELLQFLKIVKENYSSETYIAFRILAFTGIRLGELRALTWKDINFKKKTLTISKNMMNIG 238 Query: 231 -------------TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS-IWFKAK 276 I + +L + N K + F+ + + Sbjct: 239 SKSKVSTTKTKSSERIIFLDDETIKELKNYRELDNFISINNGIFTKNSRHYFNGMLMRIY 298 Query: 277 ATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRI 329 + + + HG R AT+ ++ +A E+ G K + TYT D Sbjct: 299 RDFPKLKQITPHGFRHTHATLLFESDLSAKEIQNRLGHKDITTTLNTYTHITDEK 353 >gi|171741094|ref|ZP_02916901.1| hypothetical protein BIFDEN_00161 [Bifidobacterium dentium ATCC 27678] gi|171276708|gb|EDT44369.1| hypothetical protein BIFDEN_00161 [Bifidobacterium dentium ATCC 27678] Length = 286 Score = 99.4 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 27/264 (10%), Positives = 72/264 (27%), Gaps = 9/264 (3%) Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122 P P T + + ++ ++ + + +T Sbjct: 9 RPEPFPQTWEQSVDQWLTYLRAAGRMPSTIKTRRVKLWGFVHYLAGKPPENVTRADCEKW 68 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + + + ++ F W V + + NP + P P + Sbjct: 69 MGREGLSAETRKGIRATLTSYFDWCVDHDLRSDNPAIG--LPHVAGSKPHPRPCPETGIR 126 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS----IKTQKTGTIITVELP 238 ++ + RL GLR S+ + + + + + + + Sbjct: 127 EAMDGLSERDRLMVRLGAELGLRRSEIAKVSGRDVVGPADNALLRVVGKGDKQRLIPLPQ 186 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISA 298 D +++ ++ + A + + ++ H +R +AT + Sbjct: 187 DLAVRIRQTGDGWLFPSRNDHGISHLTAGRVGKIVGSALPQS---YGTHSLRHRAATQAY 243 Query: 299 DAGATAHELMATYGWKTVDQAETY 322 A + G +V + Y Sbjct: 244 LATHDLLAVSTLLGHSSVATTQRY 267 >gi|223933696|ref|ZP_03625672.1| integrase family protein [Streptococcus suis 89/1591] gi|223897649|gb|EEF64034.1| integrase family protein [Streptococcus suis 89/1591] Length = 388 Score = 99.4 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 46/384 (11%), Positives = 120/384 (31%), Gaps = 60/384 (15%) Query: 11 VTKERTRHGKIIYY------FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64 +T+ + ++G +Y + G++++ + + +++ Sbjct: 3 ITEVKKKNGATVYRASVYLGVDQVTGKKVKTKVTGRTQKEVKQKAKQEKIAFQQDGFTRF 62 Query: 65 RKKPT-TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSG 122 + + + L S + +S ++ N++ + + + ++ G + K+TT I+S Sbjct: 63 QATSIASYQELSSLWWESYK-HTVKPNTQDNVKKLLDNHVLPLFGVYKLDKLTTPIIQSI 121 Query: 123 VESRKHTPSSA--------IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 V + + + + ++ V + ++ NP V P+ + Sbjct: 122 VNKLADKTNKGEPGAYLHYDKIHALNKRILQYGVTMQAISSNPARDVVLPRNTQKAKIKK 181 Query: 175 TKEDMQQFK-----------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL------ 217 K Q ++FLL +G R +++ + Sbjct: 182 VKHFENQDLKKFLDYLGGLDQAKYRNLYEATLYKFLLSTGCRINEALALSWSDIDLENAT 241 Query: 218 -------QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI-----------NN 259 + + + +++ + +L + + + Sbjct: 242 ISITKTLNHLGQINSPKSKASYRDIDIDQATITMLKAYQLRQIQEAWKLGQTETVVFSDF 301 Query: 260 DKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 N K + +AGV HG R A++ ++G EL G T+ Sbjct: 302 IHDYPNNKTLGTRLKTRFKRAGVPNIGFHGFRHTHASLLLNSGIPYKELQYRLGHSTLSM 361 Query: 319 AE-TYTKGADRIRLGIKNSRRISS 341 Y+ L +N+++ S Sbjct: 362 TMDIYSH------LSKENAKKAVS 379 >gi|19746693|ref|NP_607829.1| putative phage integrase [Streptococcus pyogenes MGAS8232] gi|19748916|gb|AAL98328.1| putative phage integrase [Streptococcus pyogenes MGAS8232] Length = 388 Score = 99.4 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 55/374 (14%), Positives = 98/374 (26%), Gaps = 53/374 (14%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKG---HGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60 + P + T GK YY R+G +G + T A L K E Sbjct: 5 KTKYP-NIFWYITLKGK-RYYIRRGYYLNGEKKEATESGIKTIQEA-RLLLAEIERKIEN 61 Query: 61 INSPRKKPTTLKWLISEYRKSA-HWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKH 118 K T+ Y + G + ++ + + F I K G+ I Sbjct: 62 NEFAYNKNLTVDEYWDIYVDNRLKAGVWSPDTYVERTNIFKNHISPKFGNKKMNAINRIE 121 Query: 119 IRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER---PKRKTEGIRP 173 + + + ++ S+ ++ AV+ + + N ++ + R Sbjct: 122 YENYINNLLNTNSRSTVKHIYDVFSIMLNHAVKNKMLDDNIIKFIDIGDSEIKPINKRRS 181 Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT---- 229 + + GLR S+ + ++ N K Sbjct: 182 MQEFKAWDKVARKMLDDYDYAMVRITYL-GLRRSEVAGIKLGNITFNDKDCAVVKIDESR 240 Query: 230 -------------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQ-------------- 262 + V L +LL + ND+ Sbjct: 241 TRGRKDGGGLKTAYSERYVYLDFETSQLLKKAIDTSIKIAVCNDRILNKADFLFLGDDEK 300 Query: 263 --------KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWK 314 + + FK V+ + H +R F AT AG + A G Sbjct: 301 VKPSFVGKPIGSHYIYCLFKKINKNCDVHFTPHMMRHFFATQGQIAGVPIEHMAAALGHS 360 Query: 315 TVDQAETYTKGADR 328 YT D Sbjct: 361 NNYMTSQYTHIKDE 374 >gi|312111961|ref|YP_003990277.1| integrase [Geobacillus sp. Y4.1MC1] gi|311217062|gb|ADP75666.1| integrase family protein [Geobacillus sp. Y4.1MC1] Length = 396 Score = 99.4 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 50/398 (12%), Positives = 114/398 (28%), Gaps = 72/398 (18%) Query: 10 FVTKERTRHGKIIYYFRK--------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61 + K++TR YYFR G R+ T + + + Y Sbjct: 5 RLIKKKTRG----YYFRIDVGKDPITGKRRQQSFGPFKTKTEAKKELIKIRTQVMEGTYF 60 Query: 62 NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIR 120 + + I+E+ ++ + + + + D +I + I T+ I Sbjct: 61 KPSAQD---FESFINEWFETVYCQDKSETTIETRRYIIDGHLIPYFKKMPIKDINTRVID 117 Query: 121 SGVESRKHTPSSAIQ-------------------FLTSMRVLFKWAVRQEYVAINPCLSV 161 + + + + + FK AV + +NP + Sbjct: 118 TFFAELRKNGRYPRKKTEHEEKENKDLSESYLHIIFSLLNQAFKKAVVWGLIKVNPMENA 177 Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQN 219 ++ K + ++ F S+ L F + +G+R + + + Sbjct: 178 QKISVKNNKSKKNRAWTKEEVNIFLEAASKKGLVAPFLVGVVTGIRRGELLGLKWEDIDF 237 Query: 220 NIFSIKTQKTGTIITVEL---------------------------------PDGFMKLLA 246 +I T E D + L Sbjct: 238 KNKTITINGTLYRRKGEGLKYKPKTKTDSSDNRVIPIPDAIVEVLRKEKALQDKTREKLG 297 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAH 305 + + FIN+ + ++ + F+ V + + HG+R +AT+ G Sbjct: 298 NSYNSENFVFINDKGKPIDPDYLTRKFRETVKTLNVKQINLHGLRHTAATLLMKLGVHVK 357 Query: 306 ELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343 + G V Y ++ + +++ + + Sbjct: 358 IVSDILGHSRVQVTLDYYSHSNEE-MMRQSTNELEQHI 394 >gi|218133921|ref|ZP_03462725.1| hypothetical protein BACPEC_01810 [Bacteroides pectinophilus ATCC 43243] gi|217991296|gb|EEC57302.1| hypothetical protein BACPEC_01810 [Bacteroides pectinophilus ATCC 43243] Length = 413 Score = 99.4 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 41/395 (10%), Positives = 105/395 (26%), Gaps = 76/395 (19%) Query: 19 GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78 GK +Y + G+R + + + + + + +++ +T+ ++ Y Sbjct: 24 GKYVYTYVDPEGKRRSI---YSKDIMELREREVKLMKDQLDGLDAYAAGTSTINFVFDRY 80 Query: 79 RKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137 + L + +++ +D+ IR G + + + I L Sbjct: 81 ISTKA--ELRETTMRNYKYMYDRFIRGGFGKKKIAAVKYSDVLQFYQHLLKEKEMQINTL 138 Query: 138 TSMRVLFKWAVRQEYVAIN---------PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 ++ + + ++P + T E + F + E Sbjct: 139 ETIHTVLHPTFQLAVRDNIIRVNPSDGVMAQIKKQPGKNHGVRHALTVEQQRAFIRYIDE 198 Query: 189 GSQPRLA---FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------------- 232 F+FLL +G R ++ + + +I + Sbjct: 199 SPTFYHWASFFKFLLGTGCRIGEAIGIRWEDIDLEKRTISINHSVVYYSREFKEHPICSF 258 Query: 233 -----------ITVELPDGFMKLLAMTPIGKETF--------------FINNDKQKMNAT 267 T+ + D L M ++ F+N N Sbjct: 259 AVSLPKTEAGIRTIPMMDTVYDALQMELDDQKEHGFNETVIDGMKGFIFMNRFGNIHNPQ 318 Query: 268 QFSIWFKAKATKAG-----------------VNKSAHGVRKFSATISADAGATAHELMAT 310 + K + S H +R + + + + Sbjct: 319 AVNRAIKRIYEAHNAEEVVKAAKQHREPVIIPHFSCHHLRHTFCSRFCENETNLKVIQSI 378 Query: 311 YGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVVD 344 G ++ Y + D + + + ++ +D Sbjct: 379 MGHANIETTMDIYAEVTDTKK--QEAIQNLAHNLD 411 >gi|313886232|ref|ZP_07819961.1| site-specific recombinase, phage integrase family [Porphyromonas asaccharolytica PR426713P-I] gi|312924303|gb|EFR35083.1| site-specific recombinase, phage integrase family [Porphyromonas asaccharolytica PR426713P-I] Length = 423 Score = 99.4 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 33/300 (11%), Positives = 94/300 (31%), Gaps = 23/300 (7%) Query: 64 PRKKPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKSGDF------DYRKI 114 ++ T+ L ++ + S++ + ++ + D ++ Sbjct: 112 KKQDIDTIMQLFDKHNEDVAARVGISVSAPTLQKYKVCKRRFSEFLKDKLRRRDLKLTEL 171 Query: 115 TTKHIRSGVESRK----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170 T I + P++A + + + + + + + +P ++ + Sbjct: 172 TYMIIHDFDLYLRTVVGQNPNTATKTMKTFKTVVILGQKLGVLHHDPFVNFRF-HLEPVN 230 Query: 171 IRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227 T E++ Q + + R F F ++GL D ++ Sbjct: 231 RGFLTDEEVLQIVNKELNIPRLELVRDIFIFSCFTGLAYIDVANLTPDNIVMLGGKEWIM 290 Query: 228 KTGTIITVELPDGFMKL--LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 +VE + + ++ +T+ ++ + + + K A G+ K Sbjct: 291 TKRQKTSVETNVLLLDIPKRIISKYSHQTYRDGKLFPILSNQKTNSYLKEIADICGIKKN 350 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI--RLGIKNSRRISS 341 + H R AT+S G + G + + Y + ++ + + ++ Sbjct: 351 LTFHLARHTFATMSLSKGVPIESVSKMLGHTNIRTTQIYARITNKKIEHDMEQFADKLGK 410 >gi|260900247|ref|ZP_05908642.1| site-specific recombinase, phage integrase family [Vibrio parahaemolyticus AQ4037] gi|308107582|gb|EFO45122.1| site-specific recombinase, phage integrase family [Vibrio parahaemolyticus AQ4037] Length = 385 Score = 99.4 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 42/355 (11%), Positives = 97/355 (27%), Gaps = 26/355 (7%) Query: 3 PSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62 P + P + + I R + + + Sbjct: 29 PWKKNPRLRVLVTAKSMRWIVRLGWKGKRYYESFGTYPEMKFAEFNQLAYQFIADVQSGA 88 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFDYRKITTKHI 119 + T++ + + N +++ +++ G +T + + Sbjct: 89 YQKGARLTVQQFFDD-----VVLPYSRNHHRDSKTFLSRSKRVMAAFGKERVTDVTRRDV 143 Query: 120 RSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + S + +S ++ + LF AV E + +P V++ R + ++ Sbjct: 144 ERFLNSLTDLSHASINRYHAFLSKLFSMAVEHEIIDKSPVKGVKKRVENNAKDRVLSSKE 203 Query: 179 MQQFKSFWSEGSQPRLAF--EFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIIT 234 M+ F A L +G+R + L +++ S K+G Sbjct: 204 MESFCRNACAEPNFLHASALMLSLLTGMRIGNVISLTRSMLADDLSSALLPMTKSGKSQR 263 Query: 235 VELPDGFMKLLAMT-----PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSA 286 + + +L+ N + + + G + Sbjct: 264 IYFSEPAKRLIRKCLKVSFNDWVFPSLNNRGEHIAYPRACMERIQQAMKQEGCLDAPFTI 323 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETY-----TKGADRIRLGIKNS 336 H +R+ AT A + G V+ E Y T A + + Sbjct: 324 HDLRRTYATQMLIATNDIRLAQQSLGHSNVNVTERYAYYQNTHLAQASQQTVDAM 378 >gi|257485772|ref|ZP_05639813.1| Phage integrase:Phage integrase, N-terminal SAM-like protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|302130294|ref|ZP_07256284.1| Phage integrase:Phage integrase, N-terminal SAM-like protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|331012868|gb|EGH92924.1| Phage integrase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 320 Score = 99.4 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 38/271 (14%), Positives = 79/271 (29%), Gaps = 31/271 (11%) Query: 89 VNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRKHTP---SSAIQFLTSMRV 142 +R ++++ + G + +T H+ + +H ++ + L ++ Sbjct: 39 PRTRRAYQNDLEDFCGFVGLASADEFRVVTRSHVLAWRAQLEHRGLAGATIRRKLAALAS 98 Query: 143 LFKWAVRQEYV---AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLA 195 LF + + + + + + E G + R Sbjct: 99 LFDHLLESNAIAGGNPVHGVKRPKIESNEGKTPALGDHQAKALLEAPDETTLKGLRDRAL 158 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---------------IITVELPDG 240 LLY GLR ++ V +Q+ + G I L Sbjct: 159 MAVLLYHGLRREEAALLQVGDIQDRRGIQHLKVHGKGGKVRYLPLHPVAAGRIHQYLESS 218 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATIS 297 + A + A A KAG+ HG+R +AT + Sbjct: 219 GHHWADRKVPLFIPLRGKLTGAGITANGIYMVVAAYAKKAGIQVDGLGVHGLRATAATNA 278 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADR 328 + A ++ A G + + Y + +R Sbjct: 279 LEHEADIAKVQAWLGHANISTTKIYDRRENR 309 >gi|229545371|ref|ZP_04434096.1| phage integrase family site specific recombinase [Enterococcus faecalis TX1322] gi|229549618|ref|ZP_04438343.1| phage integrase family site specific recombinase [Enterococcus faecalis ATCC 29200] gi|255972315|ref|ZP_05422901.1| predicted protein [Enterococcus faecalis T1] gi|256962649|ref|ZP_05566820.1| site-specific recombinase [Enterococcus faecalis HIP11704] gi|257079417|ref|ZP_05573778.1| site-specific recombinase [Enterococcus faecalis JH1] gi|257090319|ref|ZP_05584680.1| predicted protein [Enterococcus faecalis CH188] gi|307272763|ref|ZP_07554010.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0855] gi|307295840|ref|ZP_07575672.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0411] gi|312902821|ref|ZP_07762025.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0635] gi|229305283|gb|EEN71279.1| phage integrase family site specific recombinase [Enterococcus faecalis ATCC 29200] gi|229309478|gb|EEN75465.1| phage integrase family site specific recombinase [Enterococcus faecalis TX1322] gi|255963333|gb|EET95809.1| predicted protein [Enterococcus faecalis T1] gi|256953145|gb|EEU69777.1| site-specific recombinase [Enterococcus faecalis HIP11704] gi|256987447|gb|EEU74749.1| site-specific recombinase [Enterococcus faecalis JH1] gi|256999131|gb|EEU85651.1| predicted protein [Enterococcus faecalis CH188] gi|306496171|gb|EFM65750.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0411] gi|306510377|gb|EFM79400.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0855] gi|310633875|gb|EFQ17158.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0635] gi|315028564|gb|EFT40496.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX4000] gi|315159447|gb|EFU03464.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0312] gi|315161436|gb|EFU05453.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0645] gi|315576751|gb|EFU88942.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0630] Length = 389 Score = 99.4 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 53/375 (14%), Positives = 119/375 (31%), Gaps = 43/375 (11%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP---- 64 +V + G + +R + ++ + +A + + + Sbjct: 18 KYVFSYSNKKG-TFWGYRYPYYNSLKHRKEASKRGFESERAANKALLKIQYDLETQNTSF 76 Query: 65 -RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKI-----TTK 117 K T+ I + A + +V+++ + ES I G+ + + Sbjct: 77 IENKQLTIDEWIKVWIPYAQ-DNWSVSTKQNIESAIKFHISPLIGNQKLSSLNKITYKRE 135 Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 I + K+T S+ + + + AV + + N + KE Sbjct: 136 FIDKLRQENKYTESTIQTWHKIVMRMINAAVHNQIIPSNTLTGFKF-DLSNNVRSFSKKE 194 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI------------K 225 + +E Q ++ F LL SG+R + + N K Sbjct: 195 LQRFIAVLENEDIQTQVIFLTLLKSGMRKGELMGLRWSDIDLNEKYFDINSTRGDYGENK 254 Query: 226 TQKTGTIITVELPDGFMKLLAMTPIG--------------KETFFINNDKQKMNATQFSI 271 + +I V + + L+ K+ F +++ + ++ + Sbjct: 255 PKTKTSIRKVYFDNSLLTLIKKYKNHEKERLFREGIILSDKDYFILSSRNLPIKQSRITY 314 Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA-DR 328 F+ KA V N + HG+R AT +AGA + G K ++ + Y+ + Sbjct: 315 MFRLLCEKAEVQNITVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVYSDVLKEE 374 Query: 329 IRLGIKNSRRISSVV 343 + ++ + Sbjct: 375 EKETADMMDKLIENL 389 >gi|218263932|ref|ZP_03477873.1| hypothetical protein PRABACTJOHN_03563 [Parabacteroides johnsonii DSM 18315] gi|218222401|gb|EEC95051.1| hypothetical protein PRABACTJOHN_03563 [Parabacteroides johnsonii DSM 18315] Length = 370 Score = 99.4 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 42/259 (16%), Positives = 83/259 (32%), Gaps = 19/259 (7%) Query: 93 ISFESYFDQIIRKS-GDFDYRKITTKHIRSGVESR---------KHTPSSAIQFLTSMRV 142 ++ + + + G + +T ++ + + K S+A L ++ Sbjct: 111 RNWNTAYKHFEKYCCGSCTFDDLTLEYCQGFLTYLLSLTTQTKGKMMASTANNNLNKLKC 170 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202 + + A + + N ++ K + T E+++ E R A F + Sbjct: 171 VLRIAYEERRIKENIAPRLKHAKEDSTRREFLTLEEVRMLAETPCEKPVIRSAALFSCLT 230 Query: 203 GLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND 260 GLR SD R +++ + T T + + LA+ E Sbjct: 231 GLRISDIIRLQWENIIRGADGGWCMHIVTKKTRTEAVLPLSDEALALCGERGEGQVFKGL 290 Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 T ++ K AG+ K + HG R AT+ AG + + V Sbjct: 291 ----TKTILPLYLKDWIKSAGIRKHITFHGFRHTYATLQLAAGTDLYTISKMLTHSNVGT 346 Query: 319 AETYTKGA-DRIRLGIKNS 336 + Y D R + Sbjct: 347 TQVYVDVVSDLKRKASEQI 365 >gi|319427384|gb|ADV55458.1| integron integrase [Shewanella putrefaciens 200] Length = 319 Score = 99.4 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 32/297 (10%), Positives = 69/297 (23%), Gaps = 50/297 (16%) Query: 80 KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 + ++ + ++ + I + T+ + + + + AI Sbjct: 13 EEMRMRGYSIRTEKTYLYWIKAFINFHNKRHPETMGTEEVTQFLTFLANQRNVAINTQKI 72 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199 + ++ L ++ + ++ + RL E L Sbjct: 73 ALNALAYLYQKHLHHELGDLGFCYATKQRHLPTVLSPSEIS--LILNELDGRDRLIIELL 130 Query: 200 LYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMK-------------- 243 SGLR S+ R +Q + +++ K L + Sbjct: 131 YGSGLRVSECLRLRIQDIDIESASLTVRDGKGHKDRQTILSHRCAEKLTTYIEKAIKIQQ 190 Query: 244 -------------LLAMTPIGKETFFINNDKQKMNATQFSIW-------------FKAKA 277 LA + T + + + Sbjct: 191 NDNQQGIGPSLPNALARKYPNAFRQHGWMFIFPSSTTCINPYTGTLCRHHLHQSVIRKAL 250 Query: 278 TKA------GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 A + H R AT AG + G V + YT + Sbjct: 251 GNAVRNIQMNKRVTCHTFRHSFATHLLQAGRDIRSVQELLGHNDVSTTQIYTHVLGQ 307 >gi|41057046|ref|NP_957649.1| putative site-specific recombinase/integrase [Bacillus methanolicus] gi|40074231|gb|AAR39395.1| putative site-specific recombinase/integrase [Bacillus methanolicus MGA3] Length = 284 Score = 99.4 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 39/269 (14%), Positives = 90/269 (33%), Gaps = 20/269 (7%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG---DFDYRKITTKHIRSGVESRKH--- 128 I E+ + + N+ + ++ D ++ K+ ++++ + + Sbjct: 2 IDEFERYLLEEGKSENTIKGYIQSVSGFLKWFSESKDVEFTKLHRENVKEYISFLRTVKN 61 Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG----IRPWTKEDMQQFK 183 P + L ++ ++ V + K + + + + Sbjct: 62 AKPKTINTKLNALVKFNEFLVETNVQQDMVLTKKDYMKAQQQYASLAKVKLKDVEKFRQL 121 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGF 241 S + L Y+GLR S++ +Q + ++++ K V + D Sbjct: 122 VLDSGNKRNYALVTLLAYAGLRISEALNLKMQDFNLVSREITVRSGKGDKFRVVFMNDKV 181 Query: 242 MKLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSA 294 L I + F++N Q +N T + FK + G + + H +R F Sbjct: 182 KAALQSWLKERKEKGIEHDFLFVSNRNQPLNRTTINKLFKEYSEPIGKDITPHDLRHFFC 241 Query: 295 TISADAGATAHELMATYGWKTVDQAETYT 323 + + G + HE+ G + YT Sbjct: 242 SHAISRGLSVHEVANQAGHSNIHTTLLYT 270 >gi|315165597|gb|EFU09614.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX1302] Length = 376 Score = 99.4 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 50/355 (14%), Positives = 112/355 (31%), Gaps = 41/355 (11%) Query: 14 ERTRHG-KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 ++ + G + ++ GR ST A ++A + + + Sbjct: 5 KKLKSGWQFRVSYKDKDGRYKTKSVNGFSTKKEAQLAASEIEARYSKGYSLKEGEKL-FH 63 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132 + + G L+ ++ D + D +++T + + + T ++ Sbjct: 64 EYFRNWFEVYRKGKLSQDNDGDIRRAVDFSEKYFPDTKLKELTRQEYQKALNDYGETHAT 123 Query: 133 A--IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-- 188 A + T MR K A+ + + NP V+ +K + Q+ E Sbjct: 124 ASVKKHHTYMRAALKDALEEGIIHRNPTYRVQAIGKKNPKHEELKYLNYQESIHLVHEIL 183 Query: 189 -----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG------------- 230 R F + +G R S+ + ++K KT Sbjct: 184 EGIKPTYTSRFIILFGIATGCRFSEIIGMTWDCIDFKNKTVKVNKTWDYKYTNTFSNTKN 243 Query: 231 --TIITVELPDGFMKLLAMTPIGKETFFI-------------NNDKQKMNATQFSIWFKA 275 + + + D + LL + ++ +++ N++ + ++ T + + Sbjct: 244 YQSKRIITIDDDTLDLLKKLQLHQKEYYLKSGLRNENNLVFLNDNMELVSNTAVNKVLRK 303 Query: 276 KATK-AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADR 328 K + HG+R A+I G + G K + +TY D Sbjct: 304 FCRKICTKELTCHGLRHTHASIMLYKGINIKYVSRRLGHKDIVTTLQTYQHILDE 358 >gi|314937138|ref|ZP_07844485.1| toxin-antitoxin system, toxin component, PIN family [Staphylococcus hominis subsp. hominis C80] gi|313655757|gb|EFS19502.1| toxin-antitoxin system, toxin component, PIN family [Staphylococcus hominis subsp. hominis C80] Length = 378 Score = 99.4 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 45/368 (12%), Positives = 112/368 (30%), Gaps = 52/368 (14%) Query: 11 VTKERTRHGKIIYYF--------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62 + K + + G Y F +R + L + ++N Sbjct: 2 IKKYKKKDGSTAYMFVAYLGVDPITRKQKRTTRRGFKTEREAKIAEAKLQTEVQSKGFLN 61 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRS 121 + TT K + + + + ++ + + F +I+++ + + ITT + + Sbjct: 62 NDI---TTFKQVYELWLEQYKCT-VRESTFVRVSNMFKLKILKEFDNMPIQSITTPYCQK 117 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG----IRPWTKE 177 + +F++AV + + NP + PKR + ++ + Sbjct: 118 VINYWIENYKDFRNIKVYAANVFEYAVMLKIIHENPFKYTKLPKRTRNKSNEHLTYYSSD 177 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI---------------- 221 +++QF + F L ++G+R + + + Sbjct: 178 ELKQFLELIKDDLMYYAMFRLLGFTGMRRGELMALTWEDINFKNKTISIDKTVTIGLNSK 237 Query: 222 -FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF----------- 269 + +I + + D + +L + + + + N +Q Sbjct: 238 EIIQPPKTHSSIRVISIDDRTISILKNWRVEQRKLCLMHGHNTSNKSQCLFTNLRTNKRL 297 Query: 270 -----SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TY 322 + K K HG R ++ +AG + E+ G ++ Y Sbjct: 298 QVQHPNKAMDKICKKYNFKKIKIHGFRHTHCSLLFEAGLSIQEVQDRLGHGDINTTMDVY 357 Query: 323 TKGADRIR 330 ++ R Sbjct: 358 AHITEKQR 365 >gi|253577472|ref|ZP_04854787.1| integrase [Paenibacillus sp. oral taxon 786 str. D14] gi|251843172|gb|EES71205.1| integrase [Paenibacillus sp. oral taxon 786 str. D14] Length = 323 Score = 99.4 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 39/274 (14%), Positives = 88/274 (32%), Gaps = 22/274 (8%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVE-- 124 + L+ + +L+ + ++ Q+ + + IT++ I++ Sbjct: 25 FEDLLQSFILDCKSKNLSPLTLRFYQDSIQQMKVAFQEQQVPLNIYAITSRQIKNHFVAY 84 Query: 125 --SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM--- 179 + + ++ + +++ K+ + ++ N + K I+ +TKE + Sbjct: 85 LIEQGKSDNTVNGRIKAVKQFLKYLFEEGWLTQNVAEELHVVKAAKLMIQTFTKEQVAAL 144 Query: 180 -QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 +Q G + L +G+R S+ C + L I+ K +P Sbjct: 145 LEQPDRKTFTGYRDFTMMVLLFETGMRISELCNLKIGDLFFKEQEIRITKGKGGRARRVP 204 Query: 239 DGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKA---GVNKSAHG 288 + F+N + ++++ + A GV S H Sbjct: 205 FQQTSAKVVRRYLDIRGDLETDALFVNINNKQISTRALQEKMQVYGIAACIKGVRVSPHT 264 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETY 322 R A G L G T+D + Y Sbjct: 265 FRHTMAKFYILNGGDPFTLRRILGHSTLDMVDYY 298 >gi|261879822|ref|ZP_06006249.1| integrase [Prevotella bergensis DSM 17361] gi|270333480|gb|EFA44266.1| integrase [Prevotella bergensis DSM 17361] Length = 407 Score = 99.4 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 35/310 (11%), Positives = 87/310 (28%), Gaps = 23/310 (7%) Query: 54 STPKREYINSPRKKPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKS---- 106 + ++ TL L ++ S + + + Sbjct: 92 LERIKSEYLGKKEDIDTLLQLFDKHNADIARQVGISASSATLQKYNVCERHFREFLQRNY 151 Query: 107 --GDFDYRKITTKHIRSGVESRK----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 D ++T IR + P++A + + + + + + + +P L+ Sbjct: 152 KRSDIKLSELTYTVIREFDIYLRTVVGQNPNTATKTMKTFKTITILGQKMGVLYHDPFLN 211 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHL 217 + T E++ + + + R F F ++GL D ++ Sbjct: 212 HRF-HLEPVNRGFLTDEEIMKIANKEISIQRLELVRDVFIFSCFTGLAYIDVSNLTPDNI 270 Query: 218 QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--NATQFSIWFKA 275 +VE + + + K + + + K Sbjct: 271 VTLDDKQWIMTKRQKTSVETNVLLLDIPKNIIAKYSHKTYRDGKLFPILTNQKTNAYLKE 330 Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI--RL 331 A G+ K + H R AT+S G + G + + Y + ++ Sbjct: 331 IADLCGIKKNLTFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKVEHD 390 Query: 332 GIKNSRRISS 341 + + ++ Sbjct: 391 MEQLADKLGK 400 >gi|330998383|ref|ZP_08322207.1| site-specific recombinase, phage integrase family [Paraprevotella xylaniphila YIT 11841] gi|329568489|gb|EGG50294.1| site-specific recombinase, phage integrase family [Paraprevotella xylaniphila YIT 11841] Length = 391 Score = 99.4 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 59/391 (15%), Positives = 119/391 (30%), Gaps = 58/391 (14%) Query: 4 SLRLPPFVTKERTRHGKIIYY---FRKGHGRRIRL-----PYPHESTFIPAYMSALTGST 55 S + P + + + G+ Y +R GH L P + + + T Sbjct: 9 SKKSPVKIRFKAMKDGRRSIYLDCYRNGHRSYEYLKLYLVPETDDKSLRLNEAAMRKAET 68 Query: 56 PKREYINSPRKKP-----------------TTLKWLISEYRKSAHWGSLAVNSRISFESY 98 R+ + +K P ++ +S +++ + Sbjct: 69 ACRKKLRELKKLPAENRRLMDTQDCISNKGISILEWLSRFKEIQRSRGVHD------IHA 122 Query: 99 FDQIIRKS-----GDFDYRKITTKHIRSGVESRKH----------TPSSAIQFLTSMRVL 143 D++ GD +I + VE K P +A + Sbjct: 123 IDRLCAILSEMNCGDTKVNEIGKDFCIAFVEYLKTGYKTAKGENLKPKTAFNRQCTFVTA 182 Query: 144 FKWAVRQEYVAINPC---LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200 A+R+ + NP ER K T +++++ + + + + A+ F Sbjct: 183 LNVAMREGIIPTNPMNLLSHHERAKASKGKRDYLTIDEVKRLIATPCKNNMIKNAYLFAC 242 Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPDGFMKLLAMTPIGKETFF 256 GLR D + + + K+G I + L + + + Sbjct: 243 NCGLRLGDVRKLKWGDITQDNDRWILSVIMNKSGKPIHIPLGVQARRWIPGCEDSGKHDT 302 Query: 257 INNDKQKMNATQ-FSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGW 313 + + + + K A AG+ KS H R AT+ GA + + G Sbjct: 303 GSLVFEHLPGDSHINDILKIWAADAGIAKSVTYHTARHTFATMLLTLGADLYTVSKLLGH 362 Query: 314 KTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 + + Y + +R + + I V D Sbjct: 363 SQIKNTQIYAEIINRRK--DEAVNLIDKVFD 391 >gi|163782181|ref|ZP_02177180.1| hypothetical protein HG1285_18649 [Hydrogenivirga sp. 128-5-R1-1] gi|159882713|gb|EDP76218.1| hypothetical protein HG1285_18649 [Hydrogenivirga sp. 128-5-R1-1] Length = 288 Score = 99.4 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 40/278 (14%), Positives = 98/278 (35%), Gaps = 23/278 (8%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRK--SGDFDYRKITTKHIRSGVESRKHTP 130 ++ ++++ + + ++ + I G+ + K+++ I V+S P Sbjct: 2 EVLELWKRNLE-RTKNQRTTEAYVRHIKNFIDTVNIGEEELLKVSSAQIFKYVDSTDLGP 60 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK----------RKTEGIRPWTKEDMQ 180 +S + L++++ FK+ +R+EY+ + +E+ ++ + TKE++ Sbjct: 61 TSLLANLSALKHFFKFLLRREYIDRDRFTDIEQAIEELREELNAKKRPTYPKALTKEEVD 120 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 + +G + + LYSG+R + + I + +T Sbjct: 121 NIFNAV-KGKRYEKIYSLFLYSGIRLGEFENLDKSSFYLDKSGILWIRLEPHMTKRNKGR 179 Query: 241 FMKLLAMTPIGKE--------TFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKF 292 +LA + ++ ++ + + G+ S H R Sbjct: 180 LAPVLAQDRDETYRITDRILKWIENYEENFRVKRGVLQVYTDRLSKRLGIPFSVHSFRHT 239 Query: 293 SATISADAGATAHELMATYGWKTVDQA-ETYTKGADRI 329 T ++G + G + ETY K + R Sbjct: 240 YITNLVNSGFPVEVVKEFAGHSNIKTTIETYYKFSQRR 277 >gi|260576807|ref|ZP_05844791.1| integrase family protein [Rhodobacter sp. SW2] gi|259020950|gb|EEW24262.1| integrase family protein [Rhodobacter sp. SW2] Length = 427 Score = 99.4 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 43/353 (12%), Positives = 85/353 (24%), Gaps = 41/353 (11%) Query: 24 YFRKGHGRRIRLPY------PHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77 Y G RR+ + + R+ P + LI Sbjct: 55 YRHAGRQRRMTFGRWPEWSVSAARERAKEIRREIDAGADPLAQRGALREAPR-VDDLIER 113 Query: 78 YRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR---------- 126 Y H LA + +S + G +IT+ + + Sbjct: 114 YCA-QHLPKLAERNASDQKSALAKMVAPVWGRKLVTEITSTDVDKLLNKIAEGRPRPHKE 172 Query: 127 ------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS-VERPKRKTEGIRP 173 K TP A + +R +F AV + NP R + E Sbjct: 173 KPNNRAKKLQPSKPTPVRANRIGEVLRKMFTLAVEWGWCEDNPAQRFHRRIETARERFLS 232 Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL---QNNIFSIKTQKTG 230 + + +E + + +G R + +A + + Sbjct: 233 KDEINSLAAALDAAEDRRAADIIRMCMLTGARLGEVRQARFEQFNLEHMSWSKPPAMTKQ 292 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA----TQFSIWFKAKATKAGV-NKS 285 + + + ++ + G+ Sbjct: 293 RRVHRVPISDETASIVRQRQLVVPRGTPWLFPSDTPGQPVQEVRRFWAQIQQECGLQEVH 352 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSR 337 H +R A++ GA+ + G + Y D +R G+ Sbjct: 353 IHDLRHTFASLLVSGGASLEMIGKLLGHSQMQTTLRYAHLMDSPLRAGVDAVA 405 >gi|160933881|ref|ZP_02081268.1| hypothetical protein CLOLEP_02743 [Clostridium leptum DSM 753] gi|156866554|gb|EDO59926.1| hypothetical protein CLOLEP_02743 [Clostridium leptum DSM 753] Length = 419 Score = 99.4 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 46/385 (11%), Positives = 110/385 (28%), Gaps = 62/385 (16%) Query: 14 ERTRHGKI--IYYFRKGHGRRIRLP-YPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 ++ G+ Y G+R Y + + K I++ R T Sbjct: 34 KKRPDGRYAMQIYLGTVDGKRKYKTVYGGTPKEVQKKADEVRILMGKGIDISAQRD---T 90 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV------E 124 K + + K + + + E I GD +I T ++++ + Sbjct: 91 FKEWGNHWLKIKKAIVSSAH-YKTCEQKLRIINCYIGDMPISQIKTANVQNIIFDLSSLN 149 Query: 125 SRKHTPSSAIQ---FLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-TEGIRPWTKEDMQ 180 P++ + + R +F+ A+ + NP SV+ + + R + E+ Sbjct: 150 RWTGKPTAKRTLVEYRSVCRQVFQLAIENRIIDYNPASSVKIVSNQLKKERRALSVEEQG 209 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------- 232 + + + A ++++GLR + + +I+ K+ Sbjct: 210 WIINTPH---RAQKAAMIMMFAGLRRGEVIPLTWNDIDFEAGTIRVNKSVFKEGTRFNIK 266 Query: 233 ---------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 V +P + L + P + M T + + + + Sbjct: 267 SGAKTESGNRVVNIPQILIDFLKLQPKDTILVCPDTKDVMMTETSWRRMWDSYIKDLNIK 326 Query: 284 K----------------------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE- 320 + H +R T+ +G G + Sbjct: 327 YGDLNGKRSKYDPKGVPITIPRITPHWLRHTFCTLLYLSGTDVLTAKEQMGHSDIKTTLG 386 Query: 321 TYTKGADRIRLGIKNSRRISSVVDS 345 YT + +++ +++ Sbjct: 387 IYTHLDKEHKR--NAVSKLNEYIET 409 >gi|153001869|ref|YP_001367550.1| integron integrase [Shewanella baltica OS185] gi|151366487|gb|ABS09487.1| integron integrase [Shewanella baltica OS185] Length = 319 Score = 99.4 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 32/297 (10%), Positives = 69/297 (23%), Gaps = 50/297 (16%) Query: 80 KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 + ++ + S+ + I + T+ + + + + AI Sbjct: 13 EEMRMRGYSIRTEKSYLYWIKAFINFHHKRHPETMGTEEVAQFLTFLANQRNVAINTQKI 72 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199 + ++ L ++ + ++ + RL E L Sbjct: 73 ALNALAYLYQKHLHHELGNLGFCYATKQRYLPTVLSPSEIS--LILNELDGRDRLIIELL 130 Query: 200 LYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFM--------------- 242 SGLR S+ R VQ + +++ K + L Sbjct: 131 YGSGLRVSECLRLRVQDIDIEQASLTVRDGKGHKDRQIILSHKCAIKLTAYINKAMEIQH 190 Query: 243 ------------KLLAMTPIGKETFFINNDKQKMNATQFSIW-------------FKAKA 277 L T + + + Sbjct: 191 SDNQQGIGPSLPNALERKYPNAFKQHGWMFIFPSTTTCINPYTGTLCRHHLHQSVIRKAL 250 Query: 278 TKA--GVN----KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 A + + H R AT +G+ + G V + YT + Sbjct: 251 GNAVRNIKITKRVTCHTFRHSFATHLLQSGSDIRSVQELLGHNDVSTTQIYTHVLGQ 307 >gi|260174248|ref|ZP_05760660.1| integrase protein [Bacteroides sp. D2] gi|315922519|ref|ZP_07918759.1| integrase [Bacteroides sp. D2] gi|313696394|gb|EFS33229.1| integrase [Bacteroides sp. D2] Length = 390 Score = 99.4 bits (246), Expect = 8e-19, Method: Composition-based stats. Identities = 42/270 (15%), Positives = 84/270 (31%), Gaps = 14/270 (5%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 + ++ +++ SL ++R + S + + + + +T + + S + Sbjct: 106 RSFLTFFKEEIANSSLKESTRQNHLSTLELLQEFKKEVLFTDLTFEFVSSFDNYLQSKGY 165 Query: 132 SAIQFLTSMRVLFKWAV----RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 M+ L ++ ++ + K E++ +F++ Sbjct: 166 HLNTIAKHMKHLKRYINVAINKEYMDIQKYAFRKYKIKSIEGSHTHLAPEELHKFENLQL 225 Query: 188 EGSQPRL-----AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242 G RL AF F Y+GLR SD ++ +E+ Sbjct: 226 TGRYTRLQKTKDAFLFCCYAGLRYSDFTNLTSANIVEFHQETWIIYKSVKTGMEVRLPLY 285 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAHGVRKFSATIS 297 L I + ++ S K AG+ S H R +AT+ Sbjct: 286 LLFEGKGIQILQRYKDDLNSFFKLKDNSNINKELNILAGLAKIDKRVSFHTARHTNATLL 345 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGAD 327 GA + G K+V + Y D Sbjct: 346 LYNGANITTVQKLLGHKSVKTTQVYANIMD 375 >gi|94499639|ref|ZP_01306176.1| Integrase [Oceanobacter sp. RED65] gi|94428393|gb|EAT13366.1| Integrase [Oceanobacter sp. RED65] Length = 331 Score = 99.4 bits (246), Expect = 8e-19, Method: Composition-based stats. Identities = 48/326 (14%), Positives = 101/326 (30%), Gaps = 29/326 (8%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 ++T+ G F+ G R +P + A T + + + T + Sbjct: 4 KKTKQGNYRAQFQ-ADGTRYDKTFPTAKE--AKHWEAETKAAANKGLNEIFKNAKTPMVE 60 Query: 74 LISEYRKSAHWGSLAVNSRIS---FESYFDQIIRKSGDFDYRKITTKHIRSGVESR---K 127 ++ ++ L N+ + ++ G+ K + + R Sbjct: 61 MVHKWY------DLHGNTLRDGLHQRNALVKMCEAMGNPQAGKFKPETFLNYRRERLSAG 114 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + + LT ++ +F W R + NP V++ + +R ++++ + Sbjct: 115 ISENMVNHELTYLKSMFNWLTRFFEWNQENPLKHVKKVTQYDVELRYLEHDEIKTLIAAL 174 Query: 187 SEG--SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 G S P L L +G+R +++ + ++L + I+ T L Sbjct: 175 ESGRSSNPSLITRLCLSTGMRWNEANQLRRENLIPSQNKIRLNITKNS-------KARTL 227 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK----SAHGVRKFSATISADA 300 L + E ++ FK K + H +R A+ Sbjct: 228 LITPQLMNEIVEQGEPFGRLFPQDHYNAFKLALDKTEIKLPKGQRTHVLRHTFASWYMIN 287 Query: 301 GATAHELMATYGWKTVDQAETYTKGA 326 G L G T+ Y A Sbjct: 288 GGRLEVLQKILGHGTILMTMKYAHLA 313 >gi|150006166|ref|YP_001300910.1| transposase [Bacteroides vulgatus ATCC 8482] gi|149934590|gb|ABR41288.1| transposase [Bacteroides vulgatus ATCC 8482] Length = 308 Score = 99.4 bits (246), Expect = 8e-19, Method: Composition-based stats. Identities = 34/304 (11%), Positives = 89/304 (29%), Gaps = 33/304 (10%) Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFD-YRKITTKHIRSGVE 124 + T++ + +++ + ++ ++ + I+ G+ D + + Sbjct: 2 RQKTIREISVAWKEYKQPY-VKQSTMAAYVLILENHILPNFGESDTLHEQAVQDFVLRKI 60 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + S L ++++ K+ V+ E++ T+ + + + ++ + Sbjct: 61 ENGLSVKSVKDILIVLKMVMKFGVKNEWMDYQEWDIKYPSSSTTKELEVLSVANHKKILN 120 Query: 185 FWSEG-SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 S L L +GLR + C + + +I +T I + Sbjct: 121 HIQNHFSFTGLGIYISLCTGLRIGEVCALKWSDINVSEGTITVNRTIERIYIIDGTKKHT 180 Query: 244 LLAMTPIGKETFFINNDK--------------------------QKMNATQFSIWFKAKA 277 L + + + ++ Sbjct: 181 ELVINTPKTQNSCREIPMTKELLAMVKPLKKVVNEDFYVLTNDEYPTEPRTYRNYYGKLM 240 Query: 278 TKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLGIK 334 K G+ K HG+R AT +AG + G + + Y ++ + I Sbjct: 241 EKLGIPKLKYHGLRHSFATRCIEAGCDYKTVSVLLGHSNISTTLDLYVHPNMEQKKRCIA 300 Query: 335 NSRR 338 + Sbjct: 301 KVFK 304 >gi|303237560|ref|ZP_07324124.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] gi|302482279|gb|EFL45310.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] Length = 410 Score = 99.4 bits (246), Expect = 8e-19, Method: Composition-based stats. Identities = 37/312 (11%), Positives = 100/312 (32%), Gaps = 25/312 (8%) Query: 54 STPKREYINSPRKKPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKS---- 106 R + ++ TT + ++ + +++ +S + Sbjct: 92 LDKIRSFFVGKDREYTTFLPIFDKFNEDVRQRVGHTISKDSLQKYSVLRRHFAEFLIYKY 151 Query: 107 GDFD--YRKITTKHIRSGVESR----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 G D + T ++ +++++ L +++ + +A ++ Y+ +P L+ Sbjct: 152 GKKDIGLAEFTPSVVQDFELYLSTAAGCAYNTSVKKLKALKTVTIYAQKRGYLLHDPFLN 211 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHL 217 + T E++ + + + + R F F ++GL D ++ Sbjct: 212 HRF-HLEPVNRGFLTDEEIMKIANKELDIHRLELVRDVFIFSCFTGLAYIDVSNLTPDNI 270 Query: 218 QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--NATQFSIWFKA 275 +VE + + + K + + + K Sbjct: 271 VTLDDKQWIMTKRQKTSVETNVLLLDIPKSIIAKYSHKTYRDGKLFPILTNQKTNAYLKE 330 Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 A G+ K + H R AT+S G + G + + Y + ++ I Sbjct: 331 IADICGIKKNLTFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKK---I 387 Query: 334 KN-SRRISSVVD 344 ++ +++ +D Sbjct: 388 EHDMEQLAGKLD 399 >gi|291530087|emb|CBK95672.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3] Length = 418 Score = 99.4 bits (246), Expect = 8e-19, Method: Composition-based stats. Identities = 48/376 (12%), Positives = 96/376 (25%), Gaps = 72/376 (19%) Query: 23 YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSA 82 Y FR R + T + + TT+ + +++ Sbjct: 26 YQFRWTDSNHKRFC-VYAKTLDELRYKE-EQIKKDKSDGIKTEARYTTVNEVYELWKELK 83 Query: 83 HWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFL 137 L N+ +++ ++ +R G + I+ + R+ PS+ Sbjct: 84 --RGLKNNTFENYKYMYETFVRHQIGSKTVSSLKKTDIKRFYNYLTDERQLKPSTIDSIH 141 Query: 138 TSMRVLFKWAVRQEYVAINPCLS-----VERPKRKTEGIRPWTKEDMQ---QFKSFWSEG 189 T + + AV +Y+ NP + + KTE R T+ + + + Sbjct: 142 TVLHQILDMAVDDDYIRNNPSDNVLRELKQAHCFKTEKRRALTRPEQELLLSYLKNTPAA 201 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-------------------------NNIFSI 224 F L+ +GLR + + Sbjct: 202 QYWYPIFAVLVGTGLRVGELTGLRWCDVDLENGVIDVNHTLVYYDHRTDGSKKGCYFNVN 261 Query: 225 KTQKTGTIITVELPDGFMKLLAMTPI---------------GKETFFINNDKQKMNATQF 269 + V + + + M + FIN + Sbjct: 262 TPKTPAGKRKVPMLSFVKEAIIMEKERQELLDLHCTATIDGYTDFIFINRFGNPQHQGTL 321 Query: 270 SIWFKAKATKAG--------------VNKSAHGVRKFSATISADAGATAHELMATYGWKT 315 + + + S H +R T +AG + T G K Sbjct: 322 NKAIRRIIRDCNDEQFLKNENPEVLLPHFSCHSLRHTFTTRMCEAGVNVKVIQDTLGHKD 381 Query: 316 VDQA-ETYTKGADRIR 330 + YT +R Sbjct: 382 ISTTLNIYTDVTKELR 397 >gi|229004115|ref|ZP_04161916.1| Integrase/recombinase [Bacillus mycoides Rock1-4] gi|228756976|gb|EEM06220.1| Integrase/recombinase [Bacillus mycoides Rock1-4] Length = 306 Score = 99.4 bits (246), Expect = 8e-19, Method: Composition-based stats. Identities = 30/277 (10%), Positives = 72/277 (25%), Gaps = 29/277 (10%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGVESRKHTPS 131 + ++++ + +L+ + S+ + + + + R I ++S + + T Sbjct: 7 MKDFKEEKEFANLSPRTIQSYMATLHEFQEFCSERELIDTRDIREATVKSYLMYCQKTRG 66 Query: 132 ----SAIQFLTSMRVLFKWAVRQEYVAINPCLSVER----------PKRKTEGIRPWTKE 177 + L +++ F + ++ ++ + + + Sbjct: 67 NNVVTRNTKLHHLKIFFNYLQHEDIISEKENPIRKMKLAKEDIKIEVFQDEHIKQMLRYY 126 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII---- 233 + ++ + FLL +G R + L ++ Sbjct: 127 RRLKARNKSFYAYRDHTIIIFLLGTGSRLGELINIRWSELDLVNQTVTLFGKARKQQTVP 186 Query: 234 --------TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285 E + L P T + K + V S Sbjct: 187 LTNKLVKEFCEYKVFMERELGRLPEYVFTTREGKQMSSNSVKLIFKRLKQVMNFSDVRLS 246 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 AH R A AG L + E Y Sbjct: 247 AHTFRHTFAHRCLMAGMDVFTLQRMLRHSNLRMTERY 283 >gi|186474603|ref|YP_001863574.1| integrase family protein [Burkholderia phymatum STM815] gi|184198562|gb|ACC76524.1| integrase family protein [Burkholderia phymatum STM815] Length = 331 Score = 99.4 bits (246), Expect = 8e-19, Method: Composition-based stats. Identities = 35/289 (12%), Positives = 75/289 (25%), Gaps = 34/289 (11%) Query: 71 LKWLISEYRKS--AHWGSLAVNSRISFESYFDQIIRKSGD--------FDYRKITTKHIR 120 L + + +LA N++ S+ ++ ++ +R Sbjct: 7 LGPWVRRFLLEYLVTDRNLARNTQASYRDTLTLLLPYLSKDRKTSADRLTIDDLSPSLLR 66 Query: 121 SGVE----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 S + R + + L ++ L ++ + + + T Sbjct: 67 SFLAYLEKERGCSGVTRNTRLATIHSLARFIGMHSPEHVAWSAEIRAIPFRKTPKATLTY 126 Query: 177 EDM-------QQFKSFWSEGSQPRLAFEFLLYSGLRCSD--SCRAGVQHLQNNIFSIKTQ 227 D Q G + F+ +G R + G L ++ Sbjct: 127 MDKPEIDALLQVPDIRTPLGRRDYALLLFMYNTGARADEVAHLTVGDCVLHGSLSVRLVG 186 Query: 228 KTGTIITVELPDGFMKLLAMT---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN- 283 K L +L + F+N Q + + +A Sbjct: 187 KANKARWCPLWADVADVLRPFVAGRATHDFVFLNRLGQPLTRFGIYGLVRRVVERAAETS 246 Query: 284 -------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 S H +R A +G + + A G ++D Y + Sbjct: 247 PSLAAKQISPHCIRHSCAVHLLRSGNDINTIRAWLGHVSLDTTNIYAEV 295 >gi|302039282|ref|YP_003799604.1| putative phage integrase [Candidatus Nitrospira defluvii] gi|300607346|emb|CBK43679.1| putative Phage integrase (modular protein) [Candidatus Nitrospira defluvii] Length = 410 Score = 99.4 bits (246), Expect = 8e-19, Method: Composition-based stats. Identities = 50/340 (14%), Positives = 101/340 (29%), Gaps = 30/340 (8%) Query: 11 VTKERTRHGKII--YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 + K RT+ G YY KG R L Y A+ + + E R Sbjct: 5 INKRRTQKGLAFDLYYRWKGQRYRPLLGYDLSPDEAEELAIAMISTIHRGEQAPPSRSPE 64 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFES---YFD-QIIRKSGDFDYRKITTKHIRSGVE 124 +TL+ + Y ++ + R+ + ++ + GD +T + + + Sbjct: 65 STLRTFLPIYWQALRVKN-----RVDLRRPEIILETHLLPRFGDRLLDSLTPEDGQEYIA 119 Query: 125 SR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT------ 175 +R K +P + + + + AV E + N V+ P+ Sbjct: 120 ARLDAKASPGTIQKEWGVLMRILNLAVDFEKLDRNRLKRVQLPEVARRERVATNEELSAI 179 Query: 176 -----KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230 K + + ++ + L++GLR + L+ Sbjct: 180 QAEAAKRKPYKILGRVYDPAEFWRIVQVALHTGLREAKILEIDRSWLRQRDDGWWLILPP 239 Query: 231 TIITVELPDGFM---KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSA 286 + ++ + L+ + +A F + A V + Sbjct: 240 SRTRLKGTPRELPLNHLVYRALRPEVAAIEGPIFANWSADAFGHQWHRTCKAAKVQDLHF 299 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKG 325 H +R T + G + A G T Y+ G Sbjct: 300 HDLRHTFTTRLQNLGVSLEIRSALLGHSTKAIMTSQYSHG 339 >gi|325680339|ref|ZP_08159898.1| site-specific recombinase, phage integrase family [Ruminococcus albus 8] gi|324107968|gb|EGC02225.1| site-specific recombinase, phage integrase family [Ruminococcus albus 8] Length = 327 Score = 99.4 bits (246), Expect = 8e-19, Method: Composition-based stats. Identities = 31/258 (12%), Positives = 72/258 (27%), Gaps = 14/258 (5%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSA 133 + S + S ++ ++ G + I T +R E + + Sbjct: 56 FISSKRIEGCSEKSLKYYQKTITNMLVAVG-KQVKHIDTDDLRKYLTSYQEDNNSSRVTI 114 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193 + F W + Y+ +P + + K + +T E ++Q + + Sbjct: 115 DNIRRILSSFFSWLEEENYIMKSPVRRIHKIKTASTIKDTYTDEALEQMRD-DCTDLRDL 173 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGK 252 + L +G+R + + K V L + Sbjct: 174 ALIDMLASTGMRVGELVLLNRSDIDFEERECVVLGKGNKERIVYFDARTKLHLKQYLDSR 233 Query: 253 ETFFI------NNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAH 305 +++ + + + + H R+ AT++ D G Sbjct: 234 TDDNEALFVSLKAPHKRLKIGGVEVRIRKIGKRLNIQKAHPHKFRRTLATMAIDKGMPIE 293 Query: 306 ELMATYGWKTVDQAETYT 323 +L G + +D Y Sbjct: 294 QLQQLLGHRRIDTTLQYA 311 >gi|240172534|ref|ZP_04751193.1| phage integrase family protein [Mycobacterium kansasii ATCC 12478] Length = 368 Score = 99.4 bits (246), Expect = 8e-19, Method: Composition-based stats. Identities = 47/328 (14%), Positives = 101/328 (30%), Gaps = 32/328 (9%) Query: 26 RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85 R AY+ LTG + Y++ PRK T + ++ + Sbjct: 3 WVDDSGREHTRVFERRPDAQAYLDGLTGDIQRGAYVD-PRKSAETFGSVAEQWFATKGHR 61 Query: 86 SLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSG------VESRKHTPSSAIQF-- 136 + + S D + + K + ++I + + S + T SA + Sbjct: 62 --KPKTVAGYRSILDALALPKWAEVPLKQIDYQAYSTWLGGLAVDGSLRGTALSASRITQ 119 Query: 137 -LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195 + + K+A R ++ N ++R + + + ++ + Sbjct: 120 AHQLVGAVLKYAQRTGKISRNVAAEIKRSEDLPVPVERERRYLNHAELLQLAKATLRFET 179 Query: 196 FEFLL-YSGLRCSDSCRAGVQHLQNNIFSIK--------------TQKTGTIITVELPDG 240 +L Y GLR ++ +H+ + ++ T KT V +P Sbjct: 180 LTLVLGYCGLRFGEAAALRRKHVGDRELLVRSSATYVTGRGIVESTTKTNRARHVPIPGP 239 Query: 241 FMKLLAMTPIGKETFFINNDKQKMN--ATQFSIWFKAKATKAGV-NKSAHGVRKFSATIS 297 L + + + ++ F G+ H +R +A+++ Sbjct: 240 VWDRLQPELPSDPNALVFPSHRGGHLPIEEYRRAFDKGCNAVGIAGLVPHALRHTTASLA 299 Query: 298 ADAGATAHELMATYGWKTVDQA-ETYTK 324 AGA + G T + Y Sbjct: 300 ISAGANVKVVQRLLGHATAAMTLDRYGH 327 >gi|258650728|ref|YP_003199884.1| integrase [Nakamurella multipartita DSM 44233] gi|258553953|gb|ACV76895.1| integrase family protein [Nakamurella multipartita DSM 44233] Length = 371 Score = 99.4 bits (246), Expect = 8e-19, Method: Composition-based stats. Identities = 45/361 (12%), Positives = 107/361 (29%), Gaps = 41/361 (11%) Query: 14 ERTRHGKIIY--YFRKGHGRRIRLP-YPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 + + G+ + Y G R+ Y A + + K P T Sbjct: 13 YQRKDGRWVAAAYVPVADGTYRRVSHYVRTKADAKAKLREMNDRAAKNMPAPPP---SLT 69 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT 129 ++ + E+ + ++ +++ES I+ + G +++ + +R ++ + Sbjct: 70 VEAYLGEWLTHMK-QHVRRSTWVAYESNARLHIVPRIGRKKLSQLSVRDVRLMIDGLRKD 128 Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + ++R + A R+E V N V + P + + ++ + Sbjct: 129 GKGKRTVQYVHATLRAALEHAYREELVTRNVAKMVRVERPTPTPKEPLSVAEARRLLTAT 188 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------------- 232 + + +L GLR S+ C ++ ++ + Sbjct: 189 RDDE-DHALWVVMLLLGLRRSEVCGLRWDNVDLENRTLSVTHSVQRVDGKLRELPTKTRR 247 Query: 233 --ITVELPDGFMKLLAMTPIGKETFFINNDKQ----------KMNATQFSIWFKAKATKA 280 TV LP + L + M + + A + Sbjct: 248 STRTVPLPAMVHQALVTHRAAMMPTSQYLPEPVYVFGTKIGTPMEPRNLTRRWVTLAERQ 307 Query: 281 GVNKSA-HGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKG-ADRIRLGIKNSR 337 G+ + H +R ++ G +M G ++ Y + R + Sbjct: 308 GIRRVPLHALRHSCVSLLLAQGVHPRTVMEIVGHSAIEMTMNVYGHVNLETQRRALDELD 367 Query: 338 R 338 R Sbjct: 368 R 368 >gi|161867961|ref|YP_001598142.1| hypothetical protein pOU7519_99 [Salmonella enterica subsp. enterica serovar Choleraesuis] gi|161087340|gb|ABX56810.1| IntI1 [Salmonella enterica subsp. enterica serovar Choleraesuis] Length = 337 Score = 99.4 bits (246), Expect = 8e-19, Method: Composition-based stats. Identities = 34/303 (11%), Positives = 82/303 (27%), Gaps = 52/303 (17%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132 ++ + R+ + ++ + ++ + IR G + + + + + + S Sbjct: 16 VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 ++ L + + + + RP+ T +++ + + Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230 RL + L +G+R S+ + V+ L + +I ++ Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193 Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265 + + A + + M Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253 Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 F FK +AG+ K + R AT +G + G V YT Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPPTFRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313 Query: 324 KGA 326 Sbjct: 314 HVL 316 >gi|322390689|ref|ZP_08064202.1| phage integrase family site-specific recombinase [Streptococcus parasanguinis ATCC 903] gi|321142595|gb|EFX38060.1| phage integrase family site-specific recombinase [Streptococcus parasanguinis ATCC 903] Length = 377 Score = 99.4 bits (246), Expect = 8e-19, Method: Composition-based stats. Identities = 50/375 (13%), Positives = 110/375 (29%), Gaps = 58/375 (15%) Query: 11 VTKERTRHGKIIYYFRKG----HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 +T + + GK G +RIR+ + A L E Sbjct: 1 MTIRKAKSGKWTVDVSNGFHPVTQKRIRIIRKGLKSKKEA--LELEQHIRVVELKEKQFD 58 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNS----RISFESYFDQIIRKSGDFDYRKITTKHIRSG 122 T L + V+ R ++E I + + K+T HI Sbjct: 59 FVVTTDMLFDLLEEDDLKNGRKVSYTSTQRNNYER---HIKPYFKNTNLNKLTYDHIFEF 115 Query: 123 VESRKHTP-----------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 E K P ++ + L ++ +F +R+ + NP ++ + + I Sbjct: 116 REYLKTKPKKQNENEVLSYNTINKILILLKKIFDTGIRKSLIDKNPVENLRKLPIRKPNI 175 Query: 172 RPWTKEDMQQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAGVQ--------------- 215 + W+ E+ +F+ + L F ++G+R + Sbjct: 176 KFWSIEEFTRFRELIRDDEISYDLFFVIAFFTGMRMGEILALNWNDINLLTNTIYVTKTV 235 Query: 216 -HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET------------FFINNDKQ 262 + N + T+ + + ++L + ++ I + Sbjct: 236 YFVNNTSYINTTKTRSGTRNITINQKLAEMLKDWKVKQKEKLEEFTKNTEELQIIQSTPI 295 Query: 263 KMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA- 319 + FK + H +R A++ + G + G ++ Sbjct: 296 TITKNMIDKKFKQILERDKDLKKIRIHDLRHSHASLLINQGEDYLVVKERLGHASITTTI 355 Query: 320 ETYTKG--ADRIRLG 332 +TY+ + + L Sbjct: 356 DTYSHLYPSKQKTLA 370 >gi|169824629|ref|YP_001692240.1| putative transposon integrase [Finegoldia magna ATCC 29328] gi|167831434|dbj|BAG08350.1| putative transposon integrase [Finegoldia magna ATCC 29328] Length = 411 Score = 99.4 bits (246), Expect = 8e-19, Method: Composition-based stats. Identities = 47/415 (11%), Positives = 101/415 (24%), Gaps = 80/415 (19%) Query: 1 MTPSLRLPPFVT----KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTP 56 M + V + + +G + ++ GRR + + L + Sbjct: 1 MVKRRKDSKGVVLKDGEYQRSNGTYEFKWQDKIGRRKSIYAKTLKELREKELDILRNTID 60 Query: 57 KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKIT 115 S T K + L N+ ++ + Q + G I Sbjct: 61 GINNEGSSLSVNDTFK------LWTKVKRGLKDNTFKNYIYMYQQFVEPTFGRIKLSDIK 114 Query: 116 TKHIRSGVESRKHT----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLS--------VER 163 +RS K S+ T + + + AV EY+ NP + Sbjct: 115 RSDVRSFYNRLKEDQGLMVSTIDCVHTVLHQVLELAVDDEYIRFNPSDNALKELKVAYRN 174 Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH------- 216 K + + + +++ S E + F +L++G+R + Sbjct: 175 ESPKKKAMTIEEQVLFEEYLSNSDEYKKWYPIFIVMLWTGMRVGEVTGLQWDDLDFDNGL 234 Query: 217 ---------------LQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261 L N + ++ + M ++TF I Sbjct: 235 INVNRTLVYYSKGKGLNNRYAINTPKTASGKRSIPMVQKVKDAFLMERELQKTFGIECCD 294 Query: 262 ---------------QKMNATQFSIWFKAKATKAGV-----------------NKSAHGV 289 + N + + + + S H Sbjct: 295 SIDGFKDFVFLNRFGKVHNNGTLNKALRRIVRDCNLSIMDKNKSSSNDILLVPHLSNHIF 354 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVV 343 R T + + + G + Y + + I+ + Sbjct: 355 RHTFTTRLNEQNINTKAMQSILGHSDISTTMDIYVDATEDFK--IEQMGEFEKAM 407 >gi|323484510|ref|ZP_08089875.1| phage integrase family Site-specific recombinase [Clostridium symbiosum WAL-14163] gi|323402088|gb|EGA94421.1| phage integrase family Site-specific recombinase [Clostridium symbiosum WAL-14163] Length = 280 Score = 99.4 bits (246), Expect = 8e-19, Method: Composition-based stats. Identities = 36/259 (13%), Positives = 83/259 (32%), Gaps = 18/259 (6%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPS 131 L EY + + N+ + + + D ++T + + E + + Sbjct: 13 LFGEYLEQDE---KSKNTIEKYRRDLRKFVEYI---DGEEVTKELVIGFKEYLVEHYAVN 66 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 S + S+ ++A QE+ ++ + + TK++ + + Sbjct: 67 SVNSIIASLNRFMQFAGWQEFRVK---QLKKQRQVYCPEEKELTKQEYFELIRTAKREGK 123 Query: 192 PR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP--DGFMKLLAM 247 + L + + +G+R S+ VQ ++N + + + + + M + Sbjct: 124 EKIGLIIQTIGSTGIRISELPSITVQAVKNGVAQVDCKGKNRQVLLPRKLLVKLMHYIRK 183 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATA 304 I FI ++ + K AGVN+ H +R A Sbjct: 184 EHIQCGPIFITKQGNPLDRSNIWKEMKKICRLAGVNEKKVFPHNLRHLFAYSFYQMEKDI 243 Query: 305 HELMATYGWKTVDQAETYT 323 +L G ++ Y Sbjct: 244 AKLADLLGHSNINTTRIYI 262 >gi|323344352|ref|ZP_08084577.1| integrase [Prevotella oralis ATCC 33269] gi|323094479|gb|EFZ37055.1| integrase [Prevotella oralis ATCC 33269] Length = 389 Score = 99.4 bits (246), Expect = 8e-19, Method: Composition-based stats. Identities = 50/282 (17%), Positives = 98/282 (34%), Gaps = 20/282 (7%) Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFE---SYFDQIIRKSG--DFDYRKITTKHI- 119 + P TL L +E K S + + + + +R G D I+ + Sbjct: 99 RNPMTLLALSAEELKEQR-ESKSEGTCCNNRNSDKQLNSFVRSLGEEDIPLTAISIEFFD 157 Query: 120 --RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 R ++ + P++ + L + L AV Q + NP V+ + R +K Sbjct: 158 DYRFYLKKEGYAPATTNRHLCWLSRLMYRAVSQGTIRFNPFEEVKY-EAVENKPRFLSKG 216 Query: 178 DMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234 D+++ F + R F F ++SGL +D ++ N + + T Sbjct: 217 DVEKLLVFPLQDEGAELSRRMFLFSVFSGLAFADLQSLRASQIETNSEGKRYIRKTRQKT 276 Query: 235 -----VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287 + L ++L+ K M+ + S KA G+ + H Sbjct: 277 EVESLIPLHPIAEQILSRYTKEKSKGDYKIFPDTMSKGKLSTHLKAVGLACGIRTPLTWH 336 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R T++ +AG + G ++ + Y + D+ Sbjct: 337 VGRHSFGTLTLEAGIPMESIAKMMGHSSIASTQIYAQITDQK 378 >gi|302384969|ref|YP_003820791.1| integrase family protein [Clostridium saccharolyticum WM1] gi|302195597|gb|ADL03168.1| integrase family protein [Clostridium saccharolyticum WM1] Length = 281 Score = 99.4 bits (246), Expect = 8e-19, Method: Composition-based stats. Identities = 33/280 (11%), Positives = 81/280 (28%), Gaps = 20/280 (7%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHT 129 + L+++Y+K +L+ N+ ++E + ++IT + ++ + Sbjct: 4 EELLNDYKKFLKKKNLSNNTITAYEGSVRLFFSLN-----KEITPESLQRYKNYLISHYR 58 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----- 184 P++ Q + +M ++ S P K + + Sbjct: 59 PATVNQRIHAMNHYSRFLTETSGEEYTFIASYHLPSVKVQQKTFMDSVISNEDYELLKGK 118 Query: 185 -FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 + FL +G R S + V+HL + ++ + Sbjct: 119 LKEEKNYFWYFIVRFLAATGARVSVLVQIKVEHLNLGYLDLYSKGGKVRRIYFPDSLCQE 178 Query: 244 LLAMTPIGKETFFINNDKQK---MNATQFSIWFKAKATKAGVN---KSAHGVRKFSATIS 297 L + + + + K A + G++ H R A Sbjct: 179 ALEWCHDKDKRSGFLFLNKDGRLITPRGINSQLKHLAKRYGIDPDTVYPHSFRHRFAKNF 238 Query: 298 ADAGATAHELMATYGWKTVDQAETY-TKGADRIRLGIKNS 336 L G ++++ Y T+ + + + Sbjct: 239 LACFNDISLLADLMGHESIETTRIYLTRSSQEQQQLLDEI 278 >gi|224542974|ref|ZP_03683513.1| hypothetical protein CATMIT_02168 [Catenibacterium mitsuokai DSM 15897] gi|224524112|gb|EEF93217.1| hypothetical protein CATMIT_02168 [Catenibacterium mitsuokai DSM 15897] Length = 354 Score = 99.4 bits (246), Expect = 8e-19, Method: Composition-based stats. Identities = 36/288 (12%), Positives = 82/288 (28%), Gaps = 35/288 (12%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---- 128 LI + L+ + + ++ + + T +R R Sbjct: 54 ELIQRFLIQKKIDGLSKRTIDYYRVTLEKWLHFYIKKSVLEWTRDDVRMHFARRMIDYPD 113 Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAI-NPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 + + + F W + + Y+ NP ++++ K P + ++ + Sbjct: 114 VSKVTINNDRRNFSSFFTWLMDEGYLRNGNPMKAMKKIKVDKVIKEPIPDDQIEVMRDKL 173 Query: 186 -------------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGT 231 W + + + FE LL +G R + A ++ L K Sbjct: 174 AEKKSANKIGTRLWLKAVRDQAIFELLLTTGCRIGELTTAKIKDLDLERKEIKVFGKGAK 233 Query: 232 IITVELPD----GFMKLLAMTPIGKETFFINND---------KQKMNATQFSIWFKAKAT 278 L + L + + + ++ + I + Sbjct: 234 ERVCYLNTLSVLRMQQWLEARKDIENEYIFVSCDSANGKKGNHARLQISGVEINIRKLGR 293 Query: 279 KAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 + G H R+ +AT + G ++ G + +D Y K Sbjct: 294 ECGFENIHPHRFRRTAATTALRKGMPIEQVQLMLGHEQIDTTMIYAKT 341 >gi|126441280|ref|YP_001060060.1| phage integrase [Burkholderia pseudomallei 668] gi|126220773|gb|ABN84279.1| phage integrase [Burkholderia pseudomallei 668] Length = 381 Score = 99.4 bits (246), Expect = 8e-19, Method: Composition-based stats. Identities = 47/375 (12%), Positives = 97/375 (25%), Gaps = 51/375 (13%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 R Y F+ + A +P TLK Sbjct: 5 RRNNSKNWYYQFQIQGKK--FFGSTGTPNKTKAAQVEREMRNRAHAEQYLGDAQPITLKD 62 Query: 74 LISEYRKSAHWGSLAVNSRISFESYF--------DQIIRKSGDFD---YRKITTKH---I 119 + +Y ++ S N + G ++TT+ + Sbjct: 63 ALEQYVEARSDTSYHRNMCSIVRKTLGYKLHPRTKAKLPCYGMLPDTLLHELTTRDFDLL 122 Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFK------WAVRQEYVAINPCLSVERPKRKTEGIRP 173 + ++ P++ + +R + V +E V S + Sbjct: 123 AAKRKAEGDKPATIKHEIGLLRATINEMAKLGFKVSREIVFPELRTSYRLRYLDSNDESA 182 Query: 174 WTKEDMQQFKSFWSEGSQP------------RLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221 +E + S+P FLL +G R S+ + + Sbjct: 183 LLRELDPERLRARINASKPQTPEMTRNMQDNYDITVFLLDTGCRYSEVANIPWSAINLDT 242 Query: 222 FS---IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW-FKAKA 277 + +++ + L + + + N +S K Sbjct: 243 CTISLYRSKVRNEDVLHMTSRLEAILRRRWEERRTGQRYVFEDRTGNERGYSTKSIKKAI 302 Query: 278 TKAGVN-----------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 +AG+N + H +R A+ AG + +E+ G + Y + Sbjct: 303 ERAGLNDPVLVKERGGRVTLHTLRHTFASKLVKAGVSLYEVSVLLGHSDPKMTQRYAHLS 362 Query: 327 --DRIRLGIKNSRRI 339 D R +K + Sbjct: 363 PNDASRKAVKVIDSL 377 >gi|330910587|gb|EGH39097.1| putative bacteriophage integrase [Escherichia coli AA86] Length = 345 Score = 99.0 bits (245), Expect = 8e-19, Method: Composition-based stats. Identities = 44/334 (13%), Positives = 87/334 (26%), Gaps = 30/334 (8%) Query: 14 ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + GK + Y GRR+R A+ T + ++ TL Sbjct: 4 RKLTTGKWLCECYPAGRSGRRVR-KQFATKGEALAFERHTMEETEAKPWLGESVD-RRTL 61 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----- 126 K L+ + K H SL + ++ ++ G+ +T+K + R Sbjct: 62 KDLVELWFK-LHGKSLTAG-QHVYDKLL-LMVDALGNPLATDLTSKMFAHYRDKRLTGEI 118 Query: 127 --------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 +P + + + +F R + L R E W + Sbjct: 119 YFSEKWKKGASPVTVNLEQSYLSSVFSELSRLGEWSYPNPLENMRKFTIAEKEMAWLTHE 178 Query: 179 MQQFKSFWSEGSQPRLAFE--FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 + P LA L +G R ++ + + K ++ Sbjct: 179 QIVELLADCKRQDPILALVVKICLSTGARWREAVNLTRSQVTKYRITFVRTKGKKNRSIP 238 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296 + + + F + + + H +R A Sbjct: 239 ISKELYEEIMALDGFNFFTDCYFQ--------FLSVMEKTSIVLPRGQLTHVLRHTFAAH 290 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 +G L G + Y +R Sbjct: 291 FMMSGGNILALQKILGHHDIKMTMRYAHLETALR 324 >gi|283851760|ref|ZP_06369038.1| integrase family protein [Desulfovibrio sp. FW1012B] gi|283572880|gb|EFC20862.1| integrase family protein [Desulfovibrio sp. FW1012B] Length = 296 Score = 99.0 bits (245), Expect = 8e-19, Method: Composition-based stats. Identities = 43/292 (14%), Positives = 88/292 (30%), Gaps = 21/292 (7%) Query: 70 TLKWLISEYRKSAHWGSLAVNS--RISFESYFDQIIRKSGDFDYRK-ITTKHI---RSGV 123 T+ Y + S + R + + I++ G + IT K++ R+ + Sbjct: 3 TISDAWELY--ANLVLSSSPAYCIRTETGRWNNHIVKYFGSTHLVENITNKNLLSFRAAL 60 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 ++ +P + L+ +R + +Q + + + PK + +R TK + Sbjct: 61 VKKRLSPQTITHCLSLLRRVL-HRAQQWDLLDAKLPNFDMPKFDNKRVRFLTKSEANTLL 119 Query: 184 SFWSEGSQ-PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242 S SQ L++GLR + H ++ +T + +P Sbjct: 120 VELSLKSQLWHDISLLALHTGLRAGEIFSLRPSHFDQPNSALYIFETKSNRNRSIPLNAT 179 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---------KSAHGVRKFS 293 + + + + F N H +R Sbjct: 180 ARHILKANCAGSTDFVFKEHDRQIKNVNRIFSTAVQTCQFNTPTQDRRQRVVFHTLRHTF 239 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345 A+ AG + G K++ Y A G + + VD Sbjct: 240 ASWLVQAGTPLIVVSQLLGHKSLQMTSRYAHLAPTQ--GATAVKALEQFVDY 289 >gi|239627043|ref|ZP_04670074.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239517189|gb|EEQ57055.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 298 Score = 99.0 bits (245), Expect = 8e-19, Method: Composition-based stats. Identities = 45/275 (16%), Positives = 92/275 (33%), Gaps = 16/275 (5%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TPSS 132 I EY + + + + Y Q +GD T + + + TP + Sbjct: 14 IEEYGQWLESCERSRETVKKYRHYLKQFKEFTGDGPV---TKEVVLLWKADLRERLTPVT 70 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 + ++ FK+ + +S + TK++ + Sbjct: 71 INCVIAALNGFFKYCGWDGCESKFLKISKSSFYP---ERKELTKDEYGRLVKTAFANGNE 127 Query: 193 RLAF--EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII--TVELPDGFMKLLAMT 248 RLA E + SG+R S+ V+ ++ I+ + + T +L + Sbjct: 128 RLALVLETICVSGIRVSELSFITVEAIRRGQAEIECKGRIRTVLLTRQLCTILQSYASKK 187 Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAH 305 I F+ + ++ + KA +AGV H +R A + Sbjct: 188 NISTGMIFVTKSGKALDRSNIWREMKALGMEAGVKNEKIFPHNLRHLFARTYYEIEKNLS 247 Query: 306 ELMATYGWKTVDQAETYTKGA-DRIRLGIKNSRRI 339 +L G + ++ YTK + + RL ++ R + Sbjct: 248 KLADILGHRDINTTRIYTKESGSQHRLQLEKMRLL 282 >gi|14251156|ref|NP_116524.1| integrase [Lactococcus phage BK5-T] gi|928834|gb|AAA98585.1| integrase [Lactococcus phage BK5-T] gi|26005553|emb|CAC80173.1| integrase [Lactococcus phage BK5-T] Length = 374 Score = 99.0 bits (245), Expect = 8e-19, Method: Composition-based stats. Identities = 42/353 (11%), Positives = 99/353 (28%), Gaps = 44/353 (12%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTP-KREYINSPRKKPTTLK 72 + R Y + RL ST A A+ + K+ +I P K+ + Sbjct: 4 YQKRGKTWQYSISRTKQGLPRLTKGGFSTKSDAQAEAMDIESKLKKGFIVDPIKQEIS-- 61 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132 ++ + ++ + +E + + +IT + + T + Sbjct: 62 EYFKDWMELYKKNAIDEMTYKGYEQTLKYLKTYMPNVLISEITASSYQRALNKFAETHAK 121 Query: 133 AIQ--FLTSMRVLFKWAVRQEYVAINPC-----LSVERPKRKTEGIRPWTKEDMQQFKSF 185 A F T +R + + + + + K + + + + Sbjct: 122 ASTKGFHTRVRASIQPLIEEGRLQKDFTTRAVVKGNGNDKAEQDKFVNFDEYKQLVDYFR 181 Query: 186 WSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------- 234 + +G+R S++ + N +IK ++T Sbjct: 182 NRLNPNYSSPTMLFIISITGMRASEAFGLVWDDIDFNNNTIKCRRTWNYRNKVGGFKKPK 241 Query: 235 -------VELPDGFMKLLAMTPIG-------------KETFFINNDKQKMNATQFSIWFK 274 + + D M+LL + + ++ + + Sbjct: 242 TDAGIRDIVIDDESMQLLKDFREQQKTLFESLGIKPIHDFVCYHPYRKIITLSALQNTLD 301 Query: 275 AKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 K + + HG+R A++ G + G +V +TY Sbjct: 302 HALKKLNISTPLTIHGLRHTHASVLLYHGVDIMTVSKRLGHASVAITQQTYIH 354 >gi|15606394|ref|NP_213774.1| hypothetical protein aq_1137 [Aquifex aeolicus VF5] gi|2983608|gb|AAC07178.1| putative protein [Aquifex aeolicus VF5] Length = 290 Score = 99.0 bits (245), Expect = 8e-19, Method: Composition-based stats. Identities = 37/288 (12%), Positives = 93/288 (32%), Gaps = 26/288 (9%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTP 130 ++ + + + + ++ ++ + + + + V+ P Sbjct: 3 VLEAWERHLE-KTKSQKTKETYLMLVKEFFKFHKVDEKEIIENLKPSMVYRFVDESDLNP 61 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE----------RPKRKTEGIRPWTKEDMQ 180 SS + L+++R K+ R+EY+ + S++ K+ R T+E+++ Sbjct: 62 SSLLTTLSALRYFLKFLTRREYIEKSMYESLKAAIEEAREELNAKKTPRYPRALTREEIE 121 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDS-------CRAGVQHLQNNIFSIKTQKTGTII 233 +G + + LYSG+R + + + + K Sbjct: 122 A-IFEKVKGKKYEKIYTLFLYSGIRLGEYEKLSEENFFMDKSGILWIKLTPEMTKRNKGR 180 Query: 234 TVELPDGFM-KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKF 292 V + + L +T ++ ++ + + ++ S H R Sbjct: 181 LVPILSPDKDETLKVTEKLSRWIEDFEGNFRVKRGVLQVYTDRLSKRLNIDFSIHSFRHT 240 Query: 293 SATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRI 339 T ++G + G ++ ETY K + R + R Sbjct: 241 YITNLINSGFPIEVVKEFAGHSSIKTTVETYYK-FSQKR-AQELVRNF 286 >gi|317967959|ref|ZP_07969349.1| integrase/recombinase [Synechococcus sp. CB0205] Length = 319 Score = 99.0 bits (245), Expect = 8e-19, Method: Composition-based stats. Identities = 38/278 (13%), Positives = 74/278 (26%), Gaps = 30/278 (10%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQII----RKSGDFDYRKITTKHIRSGVESRKH- 128 L+ + + +R + + R R+I + + H Sbjct: 29 LLKRFLAQCSRSG-SQETRDGYAREIRHYVSWRDRHHPHLHLREIDPSLTENWIAELLHA 87 Query: 129 ------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 P S + ++++ +++WA A+ P R K + Sbjct: 88 VEVGELKPRSFNRRVSAVSAMYRWASEPSRSAVTGVPRNPIPPRVQLHAPKLAKPLPEAD 147 Query: 183 KSFW------------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------NNIFSI 224 S ++ + G R S+ R ++ Sbjct: 148 LSAVLGRISQAKAEGSKTAARDFVLVRGSYLLGCRVSELARLKWGDIEAVDGGGQVTLLG 207 Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284 K K T+ + L G F N ++ + + +A V+ Sbjct: 208 KGSKQRTVRISVETLELFESLGRRESGDWVFPSNRKDGPLSRQAIAERMRRWGREAEVHL 267 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 H +R AT + G L AT G + Y Sbjct: 268 HPHKLRHTHATHAIRRGVDVFTLQATLGHSSSATTSGY 305 >gi|313886120|ref|ZP_07819854.1| site-specific recombinase, phage integrase family [Porphyromonas asaccharolytica PR426713P-I] gi|312924423|gb|EFR35198.1| site-specific recombinase, phage integrase family [Porphyromonas asaccharolytica PR426713P-I] gi|332177795|gb|AEE13485.1| integrase family protein [Porphyromonas asaccharolytica DSM 20707] Length = 423 Score = 99.0 bits (245), Expect = 8e-19, Method: Composition-based stats. Identities = 33/300 (11%), Positives = 94/300 (31%), Gaps = 23/300 (7%) Query: 64 PRKKPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKSGDF------DYRKI 114 ++ T+ L ++ + S++ + ++ + D ++ Sbjct: 112 KKQDIDTIMQLFDKHNEDVAARVGISVSAPTLQKYKVCKRRFSEFLKDKLRRRDLKLTEL 171 Query: 115 TTKHIRSGVESRK----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170 T I + P++A + + + + + + + +P ++ + Sbjct: 172 TYMIIHDFDLYLRTVVGQNPNTATKTMKTFKTIVILGQKLGVLHHDPFVNFRF-HLEPVN 230 Query: 171 IRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227 T E++ Q + + R F F ++GL D ++ Sbjct: 231 RGFLTDEEVLQIVNKELNIPRLELVRDIFIFSCFTGLAYIDVANLTPDNIVMLGGKEWIM 290 Query: 228 KTGTIITVELPDGFMKL--LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 +VE + + ++ +T+ ++ + + + K A G+ K Sbjct: 291 TKRQKTSVETNVLLLDIPKRIISKYSHQTYRDGKLFPILSNQKTNSYLKEIADICGIKKN 350 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI--RLGIKNSRRISS 341 + H R AT+S G + G + + Y + ++ + + ++ Sbjct: 351 LTFHLARHTFATMSLSKGVPIESVSKMLGHTNIRTTQIYARITNKKIEHDMEQFADKLGK 410 >gi|307610879|emb|CBX00496.1| prophage dlp12 integrase [Legionella pneumophila 130b] Length = 324 Score = 99.0 bits (245), Expect = 8e-19, Method: Composition-based stats. Identities = 42/329 (12%), Positives = 94/329 (28%), Gaps = 18/329 (5%) Query: 17 RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76 + + + + G+R+R A + T + Sbjct: 5 KRDGVWWLDIRHQGKRVR-KSTGTEIREDALRLHDQLKHELWQTDKIKSLPNRTWMDAVL 63 Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT---KHIRSGVESRKHTPSSA 133 + + S + + + + I + I E+ + ++ Sbjct: 64 RWIDESSHK----RSLETDKYHLAWLDSFLRAKKLSDIDRDLIEFIAKKKEAEHVSLTTV 119 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193 + L +R + A ++ ++ + K + + IR TKE+ Sbjct: 120 NRVLELVRAILNRAHKEWG-WLDKTPIIRMRKIENKRIRWLTKEEAN--LLLKELPPHLE 176 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----GTIITVELPDGFMKLLAMTP 249 F L +GLR S+ + + + I V L + +L Sbjct: 177 AMASFTLATGLRESNVTQLKWSEINLDKKHALIHADESKSKRPIPVPLNKQAISILKAQQ 236 Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308 T+ + + + ++ +AG+ + H +R A+ G HEL Sbjct: 237 GRNSTYVFTYNGNPVTRCN-NHAWQKALIRAGINDFRWHDLRHTWASWHVQNGTPLHELQ 295 Query: 309 ATYGWKTVDQAETYTKGAD-RIRLGIKNS 336 GW + Y + +R + Sbjct: 296 QLGGWSNYEMVLRYAHLSSAHLRAAAERV 324 >gi|303326864|ref|ZP_07357306.1| site-specific recombinase, phage integrase family [Desulfovibrio sp. 3_1_syn3] gi|302862852|gb|EFL85784.1| site-specific recombinase, phage integrase family [Desulfovibrio sp. 3_1_syn3] Length = 448 Score = 99.0 bits (245), Expect = 8e-19, Method: Composition-based stats. Identities = 46/367 (12%), Positives = 91/367 (24%), Gaps = 63/367 (17%) Query: 33 IRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSR 92 IRL + A + + T L Y+ A ++ S Sbjct: 80 IRLGR-RPQSLKERREMAEAARLEAERTAARAKLRSITFGELAELYKAWAKERRVSAGSV 138 Query: 93 ISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----------------SRKHTPSSAIQF 136 I+ GD +IT + + + +P + + Sbjct: 139 EQVLDM--HILPVLGDRVAAEITPADVEALRKLVADKHPLTGRNKNTPGACLSPQTVLHV 196 Query: 137 LTSMRVLFKWAVR---------------QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 L ++R +F +A+ + + PK +R +++ Sbjct: 197 LKTVREVFNFALETPAPHEPGVMLFSGMNPAIISRRGRGIHVPKNDARRLRILNDKEITT 256 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ-------------HLQNNIFSIKTQK 228 ++ + ++ L V + T K Sbjct: 257 LLAYRGRRKEAFADLHDMILLSLDIGPRAGELVHIRRESCDPVTGAVRIYKGSRDNDTTK 316 Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK------MNATQFSIWFKAKATKAGV 282 G + F + M ++ + + K Sbjct: 317 GGASRLLFAGQLFPEAWEMLRSRLSQPGNGPYLFPGPGGKARDSNGLNRAMRRIMEKLKF 376 Query: 283 NKS---------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 N+ H +R AT +AG + L G +V E Y DR + Sbjct: 377 NEGVDDPRNTVVWHTLRHTYATKMLEAGTDIYTLKELMGHASVTTTEIYLHLCDRAKR-E 435 Query: 334 KNSRRIS 340 + RI+ Sbjct: 436 QALARIA 442 >gi|254885280|ref|ZP_05257990.1| phage integrase [Bacteroides sp. 4_3_47FAA] gi|254838073|gb|EET18382.1| phage integrase [Bacteroides sp. 4_3_47FAA] Length = 534 Score = 99.0 bits (245), Expect = 8e-19, Method: Composition-based stats. Identities = 41/312 (13%), Positives = 83/312 (26%), Gaps = 31/312 (9%) Query: 37 YPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFE 96 +T +++A+ + S + I +Y + + + + S Sbjct: 214 DTFFATVAKKWLAAMNMYKVEETKSISDIR--------IEKYLQDLRYRGYSYATLTSSL 265 Query: 97 SYFDQIIRKSGD----FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY 152 G S + ++ +R +A Q + Sbjct: 266 RSLHYFYDTIGKQNTEKPITLADIDKCIEMYTSCHTNRHTNKAYMARIRSYLHYATEQGW 325 Query: 153 VAINPCLSVERPKRKTEG----IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS---GLR 205 C +V P+ E W + ++G R + +L GLR Sbjct: 326 CQPGVCEAVVLPRIYKEENLPSFMSWNMVQAILQRMKNAKGKSARRNYTVVLLLATYGLR 385 Query: 206 CSDSCRAGVQHLQNNIFSIKTQK------TGTIITVELPDGFMKLLAMTPIGKETFFINN 259 CS+ + + I Q + + + ++ L Sbjct: 386 CSEVANLKISDIDWRKEQIHIQHAKGGKSQTFPLLHSVGEAIIEYLRFERRNDLYNDSLF 445 Query: 260 DKQK-----MNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGW 313 K + + + + K H +R AT + G T E+ G Sbjct: 446 FCAKAPFRTITCHAIHDIVRKELHDVSIKHKGPHSLRHSYATFLINNGQTMKEVGDLLGH 505 Query: 314 KTVDQAETYTKG 325 K++D Y K Sbjct: 506 KSIDSTRIYAKV 517 >gi|238063317|ref|ZP_04608026.1| phage integrase [Micromonospora sp. ATCC 39149] gi|237885128|gb|EEP73956.1| phage integrase [Micromonospora sp. ATCC 39149] Length = 340 Score = 99.0 bits (245), Expect = 8e-19, Method: Composition-based stats. Identities = 37/324 (11%), Positives = 94/324 (29%), Gaps = 56/324 (17%) Query: 68 PTTLKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGV 123 P +++ + ++ A + + ++ ++ ++ G + +RS + Sbjct: 16 PASMREAVDDFADHLARVRNRSAHTVRAYVGDLVSLLDHAARMGCTAVADLDLGMVRSWL 75 Query: 124 ESRKH-------------------------------------TPSSAIQFLTSMRVLFKW 146 ++ +P + T +R Sbjct: 76 AKQRTTGAARTTMARRAAAARAFSAWAHRAGLVPTDVAAPLASPRAHRDLPTVLRA--DQ 133 Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRC 206 A +P + + + + + + RL E L +G+R Sbjct: 134 AATLMRATTSPAGLGSDGPLEGPNPVKISPGGGGEREVAQALALRDRLLLELLYATGVRV 193 Query: 207 SDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKETFFINN------ 259 S++C + ++ ++ K +V + L Sbjct: 194 SEACGLDTADVDHSRRVVRVLGKGSRERSVPYGVPAQRALDDWLQAGRPVLTGPGSGGAL 253 Query: 260 ----DKQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATISADAGATAHELMATYGWK 314 +++ T A AG+ ++ HG+R +AT + GA + G Sbjct: 254 LLGARGGRLHPTMARRIVAGYAEAAGLPRTTPHGLRHSAATHLLEGGADLRAVQELLGHS 313 Query: 315 TVDQAETYTK-GADRIRLGIKNSR 337 ++ + YT +R+R + + Sbjct: 314 SLASTQIYTHVSVERLRAAYRQAH 337 >gi|257451607|ref|ZP_05616906.1| integrase/recombinase, phage integrase family protein [Fusobacterium sp. 3_1_5R] Length = 346 Score = 99.0 bits (245), Expect = 8e-19, Method: Composition-based stats. Identities = 48/311 (15%), Positives = 111/311 (35%), Gaps = 23/311 (7%) Query: 50 ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF 109 AL+ ++ T ++L ++ +L+ NS ++ ++ Sbjct: 39 ALSKYNLVKKGKYEVVVSENTNEFLWKKFFIGKRIENLSENSLKVYKDNLERFDSVI-KK 97 Query: 110 DYRKITTKHIRSGVESRKHTPSSAI-----QFLTSMRVLFKWAVRQEYVAINPCLSVERP 164 ++ +TT+ +R + + SS ++ F++ V + + NP ++ Sbjct: 98 NFLDVTTEDVRFYIATVISKNSSVKETYLDNIRRFLKTFFQFLVDEGLIKTNPVTRIKPI 157 Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 + T P++ ++++ ++ + E L+ + R + + + SI Sbjct: 158 RGNTSEKLPFSNMEIEKLRNAC-SSCLEKAVIEILISTAFRRQELAEIKLSDIDFEKGSI 216 Query: 225 KTQKTGTI--------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS 270 +T G I + K + + GK F + +A+ Sbjct: 217 RTIGKGKKLGYGFLNAKALLALIEYIEKERESKSVFLFIRGKNKRFREKAGEPYDASSLY 276 Query: 271 IWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 K KAGV + H R+ +AT + D G ++ + + YT ++ Sbjct: 277 ALIKKIGKKAGVTHVHPHRFRRTAATKALDRGLGLEDVKELLRHEDIKTTLIYT-TLNKD 335 Query: 330 RLGIKNSRRIS 340 RL K++R + Sbjct: 336 RLKDKHNRFLD 346 >gi|123441995|ref|YP_001005978.1| P2-like phage integrase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088956|emb|CAL11767.1| P2-like phage integrase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 327 Score = 99.0 bits (245), Expect = 8e-19, Method: Composition-based stats. Identities = 43/302 (14%), Positives = 79/302 (26%), Gaps = 15/302 (4%) Query: 28 GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87 G+RIR + ++ A+ K +P T LI + K ++ Sbjct: 20 RAGKRIRKKFKTKAEAQQFERWAIATQNDKDWLEKPADNRPLT--ELIELWWKHHG-QNM 76 Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLF 144 + + + + K G +IT R + + +F Sbjct: 77 KDGVKRAHK--LRVMAAKMGHPKASQITRTFFSDYRVLRLAEGKKAKTVNLDQEMLGGVF 134 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204 + + L + + + D + EG + L +G Sbjct: 135 SVLIELGHYHSEHPLKAMKKIKLPAQEMGFLTNDEIRTLLSRLEGDHLKAVKLC-LATGA 193 Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264 R + + + N + K TV + + L F N Sbjct: 194 RWGEVAKLRRDEIIGNKVTYLDTKNSKNRTVPISHELCEQLTDGIKTGPLFKSLNYPY-- 251 Query: 265 NATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 I K A ++ H +R A+ G L G + Q Y Sbjct: 252 ----VRICVKEVAPGLPAGQAVHVLRHTFASHFMMNGGNILALQKILGHSNILQTMNYAH 307 Query: 325 GA 326 A Sbjct: 308 FA 309 >gi|311233617|gb|ADP86471.1| integrase family protein [Desulfovibrio vulgaris RCH1] Length = 395 Score = 99.0 bits (245), Expect = 8e-19, Method: Composition-based stats. Identities = 45/327 (13%), Positives = 92/327 (28%), Gaps = 20/327 (6%) Query: 26 RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85 R IRL + TT+ ++ + Sbjct: 61 RARITENIRLGR-RPQSLAEMREMMREAREQAAIEERRAANAATTMNEFWEKHYLPSSTL 119 Query: 86 SLAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRS---GVESRKHTPSSAIQFLTSMR 141 + + Y I GD +T I + + ++ L + Sbjct: 120 HKTPQTMKTESGYYAKWIRPVLGDSALSDLTPPLIEQVASNAMTAGRSAATIRHLLAIIS 179 Query: 142 VLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-RLAFEFL 199 ++ A E V PC +++P++ +R T+ + + S+ + Sbjct: 180 QIWGMARNHEIVNGECPCTRIKKPRKDNRRMRFLTEAEASTLLVELEKRSKDTHDSALLS 239 Query: 200 LYSGLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELPDGFMKLLAMTPIG-KETFF 256 L+ GLR + L I+ K + D +L T + Sbjct: 240 LFCGLRAGEIHSLTWTDLNFTSGTIYIRDPKNKHSRHAYMTDEVRSMLIERSKQLNATEY 299 Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNKS---------AHGVRKFSATISADAGATAHEL 307 + + S F+ + G+N H +R A+ G + + Sbjct: 300 VFPAQNGAKRNWVSDTFERVVDQLGLNDGITDSRQRVVFHTLRHTFASWLVQDGTPLYTV 359 Query: 308 MATYGWKTVDQAETYTKGA-DRIRLGI 333 G T++ + Y+ + D +R Sbjct: 360 AELMGHTTLEMTKRYSHLSPDTVRAAA 386 >gi|326330366|ref|ZP_08196676.1| putative phage integrase [Nocardioidaceae bacterium Broad-1] gi|325951903|gb|EGD43933.1| putative phage integrase [Nocardioidaceae bacterium Broad-1] Length = 382 Score = 99.0 bits (245), Expect = 8e-19, Method: Composition-based stats. Identities = 49/337 (14%), Positives = 103/337 (30%), Gaps = 30/337 (8%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPA----YMSALTGSTPKREYINSP 64 + T+ G++ R R H F + R +P Sbjct: 6 KHTARWTTKEGEVRTKVRWRAVYVDRAGEEHVKHFDRKTEGQDWIDEQTAGLVRGDWVNP 65 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGV 123 T K +R A ++R +FE + I K GD+ I ++ V Sbjct: 66 ELGKQTFKAYAEAWRARQVH---AESTRTTFEIALNAHIYPKIGDWRIDSIRQADVQELV 122 Query: 124 ESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 T P++ + ++ K A ++ +A +PC P+ + Sbjct: 123 AKWSATAAPTTVHLRYGVLAIVMKAAAKERVLAGSPCEGTRLPRLDPKSALV-PITTDVV 181 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--------------SIKTQ 227 + + + L +G+R + V + + + Sbjct: 182 KELSEMIYPRYKNLITVLAGTGMRRGEILGLTVDRVSTDFNTIRVDRQLRTTEPTWKPPK 241 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETF-----FINNDKQKMNATQFSIWFKAKATKAGV 282 ++ T+ +PD ++ + F N+ + + + + A K Sbjct: 242 TPSSVRTMAVPDIVLEAIEDQKKTFGIHESGLIFTNSSGNPIGKSTLWMAWNTAAKKVKT 301 Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 + + H +R + A++ AG + L A G K + Sbjct: 302 DATPHDLRHYFASMHIRAGTSIKALQALLGHKNAAET 338 >gi|227486813|ref|ZP_03917129.1| transposon integrase [Anaerococcus lactolyticus ATCC 51172] gi|297588612|ref|ZP_06947255.1| phage integrase family site-specific recombinase [Finegoldia magna ATCC 53516] gi|304440123|ref|ZP_07400014.1| phage integrase family site-specific recombinase [Peptoniphilus duerdenii ATCC BAA-1640] gi|325849938|ref|ZP_08170977.1| site-specific recombinase, phage integrase family [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|227235198|gb|EEI85213.1| transposon integrase [Anaerococcus lactolyticus ATCC 51172] gi|297573985|gb|EFH92706.1| phage integrase family site-specific recombinase [Finegoldia magna ATCC 53516] gi|304371386|gb|EFM25001.1| phage integrase family site-specific recombinase [Peptoniphilus duerdenii ATCC BAA-1640] gi|325479962|gb|EGC83045.1| site-specific recombinase, phage integrase family [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 411 Score = 99.0 bits (245), Expect = 8e-19, Method: Composition-based stats. Identities = 47/415 (11%), Positives = 101/415 (24%), Gaps = 80/415 (19%) Query: 1 MTPSLRLPPFVT----KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTP 56 M + V + + +G + ++ GRR + + L + Sbjct: 1 MVKRRKDSKGVVLKDGEYQRSNGTYEFKWQDKIGRRKSIYAKTLKELREKELDILRNTID 60 Query: 57 KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKIT 115 S T K + L N+ ++ + Q + G I Sbjct: 61 GINNEGSSLSVNDTFK------LWTKVKRGLKDNTFKNYIYMYQQFVEPTFGRIKLSDIK 114 Query: 116 TKHIRSGVESRKHT----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLS--------VER 163 +RS K S+ T + + + AV EY+ NP + Sbjct: 115 RSDVRSFYNRLKEDQGLMVSTIDCVHTVLHQVLELAVDDEYIRFNPSDNALKELKVAYRN 174 Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH------- 216 K + + + +++ S E + F +L++G+R + Sbjct: 175 ESLKKKAMTIEEQVLFEEYLSNSDEYKKWYPIFIVMLWTGMRVGEVTGLQWDDLDFDNGL 234 Query: 217 ---------------LQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261 L N + ++ + M ++TF I Sbjct: 235 INVNRTLVYYSKGKGLNNRYAINTPKTVSGKRSIPMVQKVKDAFLMERELQKTFGIECCD 294 Query: 262 ---------------QKMNATQFSIWFKAKATKAGV-----------------NKSAHGV 289 + N + + + + S H Sbjct: 295 SIDGFKDFVFLNRFGKVHNNGTLNKALRRIVRDCNLSIMDKNKSSSNDILLVPHLSNHIF 354 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVV 343 R T + + + G + Y + + I+ + Sbjct: 355 RHTFTTRLNEQNINTKAMQSILGHSDISTTMDIYVDATEDFK--IEQMGEFEKAM 407 >gi|82751481|ref|YP_417222.1| integrase [Staphylococcus aureus RF122] gi|82657012|emb|CAI81449.1| integrase [Staphylococcus aureus RF122] Length = 354 Score = 99.0 bits (245), Expect = 8e-19, Method: Composition-based stats. Identities = 44/352 (12%), Positives = 101/352 (28%), Gaps = 30/352 (8%) Query: 18 HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77 GK Y F R + + + + A A T+ ++ Sbjct: 8 KGKWYYDFGHEGKRYKKKGFTTKREAVQAESIARNKVMK-----GFKINDKTSFIAYYND 62 Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSG-----DFDYRKITTKHIRSGVESRK--HTP 130 + K G + + +F++ +Q + + T R ++ H+ Sbjct: 63 WIKVNKEGVITDKAYATFKNAINQFKTFLEVENISNLVLSDLNTTFYRKFIKWYGSNHST 122 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSV----ERPKRKTEGIRPWTKEDMQQFKSFW 186 + + ++ A+++ + +P V P ++ E K+ + + Sbjct: 123 ETVRKIHNCLKQPIDDAIQEGLIHKDPTYKVVVKGTIPAQREEEKFMSIKDFINLKEYVS 182 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------ITVELPD 239 + Q L L+ +G R + R L +I T T I Sbjct: 183 NTPIQSYLFIYILIITGGRFGEVQRLCTSDLDYKNCTIHLPGTKTETSDRTVDIPQNDMK 242 Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISA 298 LA PI T N + + + + + + H +R + Sbjct: 243 ILKNTLAEMPISLTTQLFNTGTSLITHNAVTKVMQRYCLEKRIGKYTLHSIRHTHCSYLL 302 Query: 299 DAGATAHELMATYGWKTVDQAE-TYTKGAD-----RIRLGIKNSRRISSVVD 344 + + + G K++ Y+ D + ++ ++ Sbjct: 303 HNDVSIYYISKRLGHKSIKTTMDVYSHLLDEIEQKEKEKALDALENMTGTLN 354 >gi|331269495|ref|YP_004395987.1| integrase/recombinase [Clostridium botulinum BKT015925] gi|329126045|gb|AEB75990.1| integrase/recombinase, putative [Clostridium botulinum BKT015925] Length = 274 Score = 99.0 bits (245), Expect = 8e-19, Method: Composition-based stats. Identities = 37/264 (14%), Positives = 73/264 (27%), Gaps = 21/264 (7%) Query: 82 AHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKH----TPSSAIQ 135 + + S+ Q KI I + + + Sbjct: 12 LAKTRKSEKTIDSYIRDISQFNDYLKTNKKKLVKIKLSDIDEFKNFLIYDKELKIKTINR 71 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS--EGSQPR 193 L S+ K+ + E+ + + + +D++ + + R Sbjct: 72 KLVSINQYLKFNNISVDI------KQEKVQMQNFLDDMLSNQDIEDIIKATYAKDDVRAR 125 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253 L Y+G+R S+ + + + K V +P+ + + Sbjct: 126 TIIYTLYYTGMRVSEMLQLTI-YDTKKSSISIIGKGSKHREVFVPNKLKTIWDNYMQVRI 184 Query: 254 TFF---INNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHEL 307 + +N K A AGV+KS AH R AD G + Sbjct: 185 KKSTALFTGKRGPINRKTVDSIIKTYAETAGVDKSKAHAHNFRHLYCKNLADRGIDISTI 244 Query: 308 MATYGWKTVDQAETYTKGADRIRL 331 G + ++ YT+ L Sbjct: 245 ADIAGHQNINTTRIYTRKTKEELL 268 >gi|312970927|ref|ZP_07785106.1| integrase [Escherichia coli 1827-70] gi|310336688|gb|EFQ01855.1| integrase [Escherichia coli 1827-70] Length = 349 Score = 99.0 bits (245), Expect = 8e-19, Method: Composition-based stats. Identities = 43/330 (13%), Positives = 87/330 (26%), Gaps = 30/330 (9%) Query: 14 ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + GK + Y +GRR+R A+ G + ++ TL Sbjct: 4 RKLTTGKWLCECYPAGRNGRRVR-KQFATKGEALAFERYTMGEIEAKPWLGESVD-RRTL 61 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----- 126 K ++ + K H SL + ++ ++ G+ +T+K + R Sbjct: 62 KDVVELWFK-LHGKSLTAG-QHVYDKLL-LMVDALGNPLATDLTSKMFAHYRDKRLTGEI 118 Query: 127 --------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 +P + + + +F R + L R E W + Sbjct: 119 YFSEKWKKGASPVTINLEQSYLSSVFSELSRLGEWSYPNPLENMRKFTIAEKEMAWLTHE 178 Query: 179 MQQFKSFWSEGSQPRLAFE--FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 + P LA L +G R ++ + + K ++ Sbjct: 179 QIVELLADCKRQDPILALVVKICLSTGARWREAINLTRSQVTKYRITFVRTKGKKNRSIP 238 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296 + + + F + + + H +R A Sbjct: 239 ISKELYEEIMALDGFNFFTDCYFQ--------FLSVMEKTSIVLPRGQLTHVLRHTFAAH 290 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326 +G L G + Y A Sbjct: 291 FMMSGGNILALQKILGHHDIKMTMRYAHLA 320 >gi|315146182|gb|EFT90198.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX4244] Length = 389 Score = 99.0 bits (245), Expect = 8e-19, Method: Composition-based stats. Identities = 53/375 (14%), Positives = 119/375 (31%), Gaps = 43/375 (11%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP---- 64 +V + G + +R + ++ + +A + + + Sbjct: 18 KYVFSYSNKKG-TFWGYRYPYYNSLKHRKEASKRGFESERAANKALLKIQYDLETQNTSF 76 Query: 65 -RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKI-----TTK 117 K T+ I + A + +V+++ + ES I G+ + + Sbjct: 77 IENKQLTIDEWIKVWIPYAQ-DNWSVSTKQNIESAIKFHISPLIGNQKLSSLNKITYKRE 135 Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 I + K+T S+ + + + AV + + N + KE Sbjct: 136 FIDKLRQENKYTESTIQTWHKIVMRMINAAVHNQIIPSNTLTGFKF-DLSNNVRSFSKKE 194 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI------------K 225 + +E Q ++ F LL SG+R + + N K Sbjct: 195 LQRFIAVLENEDIQTQVIFLTLLKSGMRKGELMGLRWSDIDLNEKYFDINSTRGDYGENK 254 Query: 226 TQKTGTIITVELPDGFMKLLAMTPIG--------------KETFFINNDKQKMNATQFSI 271 + +I V + + L+ K+ F +++ + ++ + Sbjct: 255 PKTKTSIRKVYFDNSLLTLIKKYKNHEKERLFREGIILSDKDYFILSSRNLPIKQSRITY 314 Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA-DR 328 F+ KA V N + HG+R AT +AGA + G K ++ + Y+ + Sbjct: 315 MFRLLCEKAEVQNITVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVYSDVLKEE 374 Query: 329 IRLGIKNSRRISSVV 343 + ++ + Sbjct: 375 EKETADMMDKLIENL 389 >gi|307291405|ref|ZP_07571289.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0411] gi|306497636|gb|EFM67169.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0411] Length = 408 Score = 99.0 bits (245), Expect = 8e-19, Method: Composition-based stats. Identities = 54/396 (13%), Positives = 105/396 (26%), Gaps = 71/396 (17%) Query: 11 VTKERTRHGKIIYYFRKGHGR--------RIRLPYPHESTFIPAYMSALTGSTPKREYIN 62 + ++G+ + + +GR +I + G E++ Sbjct: 4 IKSYTLKNGQERWEYFVSNGRSNGTGRQQKIHKRGFRSHKEALKAAKIIEGQIASEEFVK 63 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRS 121 + T+ ++ + ++ SRI + I G++ K + Sbjct: 64 -ENPQKMTISKFMNIWINEYK-NNVKEGSRIVYRDAIRMYIDPYIGNYQLNKYKPADHQK 121 Query: 122 GVESR-----------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP------ 164 + S + ++ ++ FK A + YV NP VE P Sbjct: 122 FINSLFTNKELGKNKNGLSYNTVKIVNAALSNAFKKAQKLGYVKSNPTYLVEFPLDKVKE 181 Query: 165 ---KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221 K K +E++ + + + F + GLR + + Sbjct: 182 KNNKEKKLEFYTLEQENLFLDTARNFDEYMWYVFFLIIFDLGLRKGEVMALRWFNFDFRD 241 Query: 222 FSIKTQKTGTIITVELPDGFMK----------------------------------LLAM 247 + K + +L M Sbjct: 242 NILTFDKQRLYRKERPGQVILDDVKTDAGKRSLKMTNRVRNSVLELYGINYDLTNNVLPM 301 Query: 248 TPIGKETFFINNDKQ----KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGA 302 T K+ FINN + + + KA + K H R +A AG Sbjct: 302 TKSNKDFLFINNRGKNVGLPIRQRSVDTAWHRIINKAQLPKIRIHDGRHTNAARLRQAGV 361 Query: 303 TAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSR 337 ++ G K V E Y A+ + Sbjct: 362 PLEDIKDMLGHKNVKTTEIYAHVSAEVKERAVNKLE 397 >gi|303237761|ref|ZP_07324320.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] gi|302482047|gb|EFL45083.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] Length = 410 Score = 99.0 bits (245), Expect = 8e-19, Method: Composition-based stats. Identities = 37/312 (11%), Positives = 98/312 (31%), Gaps = 25/312 (8%) Query: 54 STPKREYINSPRKKPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKS---- 106 R + ++ TT + ++ + +++ +S + Sbjct: 92 LDKIRSFFVGKDREYTTFLPIFDKFNEDVSQRVGHTISKDSLQKYSVLRRHFAEFLIYKY 151 Query: 107 GDFD--YRKITTKHIRSGVESR----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 G D + T ++ +++++ L +++ + +A ++ Y+ +P L+ Sbjct: 152 GKKDIGLAEFTPSVVQDFELYLSTAAGCAYNTSVKKLKALKTVTIYAQKRGYLLHDPFLN 211 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHL 217 + T E++ + + + R F F ++GL D ++ Sbjct: 212 HRF-HLEPVNRGFLTDEEIMKIANKDLAIQRLELVRDVFIFSCFTGLAYIDVSNLTPDNI 270 Query: 218 QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--NATQFSIWFKA 275 VE + + + K + + + K Sbjct: 271 VTLDDKQWIMTKRQKTNVETNVLLLDIPKSIIAKYSHKTYRDGKLFPILTNQKTNAYLKE 330 Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 A G+ K + H R AT+S G + G + + Y + ++ I Sbjct: 331 IADICGIKKNLTFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKK---I 387 Query: 334 KN-SRRISSVVD 344 ++ +++ +D Sbjct: 388 EHDMEQLAGKLD 399 >gi|298252084|ref|ZP_06975887.1| integrase family protein [Ktedonobacter racemifer DSM 44963] gi|297546676|gb|EFH80544.1| integrase family protein [Ktedonobacter racemifer DSM 44963] Length = 362 Score = 99.0 bits (245), Expect = 8e-19, Method: Composition-based stats. Identities = 37/324 (11%), Positives = 85/324 (26%), Gaps = 41/324 (12%) Query: 49 SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD 108 A + T++ + + SAH ++ S + + ++I + G+ Sbjct: 23 RAKEHDQGRNILRPGQSAPAWTVQEYLEYWL-SAHGPTIRAISLMGYRHAVNRINKIVGN 81 Query: 109 FDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165 + + I+ + P + T + AV EY+ NP V PK Sbjct: 82 VKLKALKADKIQLAYGTMLKNGFKPRTIQTTHTIFAIALNDAVDWEYLPSNPASKVTPPK 141 Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------- 218 ++ ++ + R + +G+R ++ + Sbjct: 142 AGKREYTLLDMDEAKRLIDAAG-DTPIRAIIALAVGTGMRKAEITALKWSSIDLDAKKLY 200 Query: 219 ---------------------------NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251 ++ + ++ +L A Sbjct: 201 VAEGAVYVKLDETPGQIVENDPKTSSGRRSLTLPDFVIDELRAHKIRQKEQRLKAGAAWV 260 Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMAT 310 N + + FK +AG+ H +R A+I G + Sbjct: 261 DHGLVFTNRRGGHIYVSINEMFKRVLAQAGLPDMRLHDLRHSLASILLAMGVHPKVVQEI 320 Query: 311 YGWKTVDQAE-TYTKGADRIRLGI 333 G ++ Y+ + Sbjct: 321 LGHSSITITMNIYSHVMPSMHSAA 344 >gi|256853560|ref|ZP_05558925.1| site-specific recombinase [Enterococcus faecalis T8] gi|256710503|gb|EEU25546.1| site-specific recombinase [Enterococcus faecalis T8] gi|315143469|gb|EFT87485.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX2141] gi|315157213|gb|EFU01230.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0043] Length = 382 Score = 99.0 bits (245), Expect = 8e-19, Method: Composition-based stats. Identities = 53/375 (14%), Positives = 119/375 (31%), Gaps = 43/375 (11%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP---- 64 +V + G + +R + ++ + +A + + + Sbjct: 11 KYVFSYSNKKG-TFWGYRYPYYNSLKHRKEASKRGFESERAANKALLKIQYALETQNTSF 69 Query: 65 -RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKI-----TTK 117 K T+ I + A + +V+++ + ES I G+ + + Sbjct: 70 IENKQLTIDEWIDVWIPYAQ-DNWSVSTKQNIESAIKFHISPLIGNQKLSSLNKITYKRE 128 Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 I + K+T S+ + + + AV + + N + KE Sbjct: 129 FIDKLRQKNKYTESTIQTWHKIVMRMINAAVHNQIIPSNTLTGFKF-DLSNNVRSFSKKE 187 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI------------K 225 + +E Q ++ F LL SG+R + + N K Sbjct: 188 LQRFVAVLENEDIQIQVIFLTLLKSGMRKGELMGLRWNDIDLNEKYFDINSTRGDYGENK 247 Query: 226 TQKTGTIITVELPDGFMKLLAMTPIG--------------KETFFINNDKQKMNATQFSI 271 + +I V + + L+ K+ F +++ + ++ + Sbjct: 248 PKTKTSIRKVYFDNSLLTLIKKYKNHEKERLLREGIILREKDYFILSSRNLPIKQSRITY 307 Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA-DR 328 F+ KA V N + HG+R AT +AGA + G K ++ + Y+ + Sbjct: 308 IFRLLCEKAEVQNITVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVYSDVLKEE 367 Query: 329 IRLGIKNSRRISSVV 343 + ++ + Sbjct: 368 EKETADMMDKLIENL 382 >gi|134098863|ref|YP_001104524.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338] gi|291005779|ref|ZP_06563752.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338] gi|133911486|emb|CAM01599.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338] Length = 329 Score = 99.0 bits (245), Expect = 8e-19, Method: Composition-based stats. Identities = 49/322 (15%), Positives = 102/322 (31%), Gaps = 40/322 (12%) Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--------DYRKIT 115 PR++ +L I Y + LA NS ++ + + + ++T Sbjct: 2 PRQEDASLAHWIEVYLEHLQARKLAANSLRAYRLDLTAVAGELAELTGRGTAELPVDELT 61 Query: 116 TKHIRSGVESRKHTPSS--AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 T +RS S+ + ++ F + V + V NP + +P+ +P Sbjct: 62 TSVLRSAFARHAAARSASSVTRTWSTWNGFFGFLVVEGVVGGNPMQVIPKPRTAPATPKP 121 Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFL----------LYSGLRCSDSCRAGVQHLQNNIFS 223 ED + R + L +G+R ++ V L Sbjct: 122 LQGEDTPERLLRTVSAGVRRARNPWPERDLAVLATLLCTGVRSAELLDLKVGSLAGRAGD 181 Query: 224 IKTQKTGT--------------IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269 + G + + G + F+++ ++ + Sbjct: 182 RRLHVRGKGGKNRSIPIEDALDSVIQNYLETRRARFGERLPGSDPLFVDHREEPLRRGGL 241 Query: 270 SIWFKAKATKAGVNKSA------HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + AG++ H +R AT A+ GA+A E+ G +++ ++TY Sbjct: 242 QYLVRQSLRAAGMSDRVQRGAMVHALRHTFATRLAEDGASAAEIAKLLGHASINSSQTYI 301 Query: 324 KGADRIRLGIKNSRRISSVVDS 345 R + + R V+ Sbjct: 302 DVTAREQRLSVRANRTHRVLGE 323 >gi|325955991|ref|YP_004286601.1| integrase family protein [Lactobacillus acidophilus 30SC] gi|325332556|gb|ADZ06464.1| integrase family protein [Lactobacillus acidophilus 30SC] Length = 410 Score = 99.0 bits (245), Expect = 9e-19, Method: Composition-based stats. Identities = 48/405 (11%), Positives = 99/405 (24%), Gaps = 86/405 (21%) Query: 14 ERTRHGKIIYYFRK--GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT-- 69 ER + G Y FR G G+R + + ++ + Sbjct: 19 ERKKGG---YQFRWSTGDGKRHYM-------YANDLQELRVKEKEIIHDMDDGIRTDNMN 68 Query: 70 -TLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSGVESR- 126 TL L + + + L N+ ++ +D + G + R + I+ Sbjct: 69 LTLNDLYNIW--TDVKKGLKPNTYNNYRYMYDHFVQESLGKYKVRTLHRTDIKRFYNRLV 126 Query: 127 ---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS-----VERPKRKTEGIRPWTKED 178 + + + + AV + + N + + + T Sbjct: 127 DIDGLKIDTVGTIHLIIHQILQLAVEDDILRKNVSDNGLRDLKKVRGLHGAKRKALTVAQ 186 Query: 179 MQQFKSFWSEGSQPRLAF---EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------ 229 F +F + R + ++ SGLR + Q + I T Sbjct: 187 QNLFLNFVKSSPKYRHWYPTFAVMVGSGLRVGELTGLRWQDIDFQNNLINVNHTLIFYDR 246 Query: 230 -------------------------------GTIITVELPDGFMKLLAMTPIGKETFFIN 258 L D + + + K+ F+N Sbjct: 247 SKAKYTGFGINTPKTKAGYRSVPMIASVKEAFEEQKQYLKDNDLCSIDVIDGFKDFIFVN 306 Query: 259 NDKQKMNATQFSIWFKAKATKAGVN----------------KSAHGVRKFSATISADAGA 302 + + K A + S H +R T ++G Sbjct: 307 RFGHVQHQGTLNKAIKRIIRDANFDALEKNPAIKEENLLPNFSCHTLRHTFTTRLIESGM 366 Query: 303 TAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVDSD 346 + G + + Y L + + + D Sbjct: 367 NIKVIQEALGHSDIQTTLDIYADVT--KELKQQQFTKFEDFITKD 409 >gi|222097940|ref|YP_002531997.1| integrase/recombinase [Bacillus cereus Q1] gi|221241998|gb|ACM14708.1| integrase/recombinase [Bacillus cereus Q1] Length = 332 Score = 99.0 bits (245), Expect = 9e-19, Method: Composition-based stats. Identities = 30/316 (9%), Positives = 77/316 (24%), Gaps = 23/316 (7%) Query: 32 RIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNS 91 + R + L K+E + T+ + + L + Sbjct: 3 KKRDSLTISEDLSNVFGDRLKSDQRKKETAENRYTFNLTIDKALEIIVRQMKATGLRERT 62 Query: 92 RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQE 151 + + + + ++ HI + S + + + L ++ Sbjct: 63 INDYYIHVSHFAKITDTHYIEELNVNHIYEWLSSMNVSNQTKLTRLKCLKAFLGRCHDNG 122 Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQ---QFKSFWSEGSQPRLAFEFLLYSGLRCSD 208 ++ IN +V+ +E + A + +G+R Sbjct: 123 WIDINFWRNVKIKVDTPVKEGATDREINILLSVLDLTRFLDLRDATAILLMYQTGIRVGT 182 Query: 209 SCRAGVQH--------------LQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254 + +H ++N+ + + +++ K Sbjct: 183 LAQLEHKHVDLDAKVLNVDGGIIKNHESIYLPFDDVLARLISVLMKQNEIIRREYNVKND 242 Query: 255 FFINNDK-----QKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELM 308 + S A + G+ + H +R+ A GA + Sbjct: 243 YLFITKSGGSVLTSPTNNIISKRMTKHAKEYGLKNINPHAIRRGFAKNLLKKGANVALIS 302 Query: 309 ATYGWKTVDQAETYTK 324 G + Y Sbjct: 303 KALGHSDISVTTRYLH 318 >gi|85859016|ref|YP_461218.1| phage integrase family protein [Syntrophus aciditrophicus SB] gi|85722107|gb|ABC77050.1| phage integrase family protein [Syntrophus aciditrophicus SB] Length = 316 Score = 99.0 bits (245), Expect = 9e-19, Method: Composition-based stats. Identities = 42/319 (13%), Positives = 90/319 (28%), Gaps = 20/319 (6%) Query: 12 TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + + G + +Y+ + + T A + + P L Sbjct: 4 YSRKLKRG-VRWYYSGQYLGQKYFSRAIYLTKQEAKRAERETIAEMDQKARQP--GEVLL 60 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS-------GVE 124 K LI E R + Y +++ G+ + IT + I + Sbjct: 61 KDLIEE-RLDIILHKKSKVYYRENRLYMKKLLDAVGNIPIQDITRQQIHKVLIDYSKDLR 119 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 R T A + + LF + + + + + + ++ ++ Sbjct: 120 KRGKTDHKANAMIRCFKALFNYGISLYELNMKNPVKGIQFFSVDINLKYIPTDEDILAVK 179 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 Q L +G R +++ R + +N + T+K Sbjct: 180 EGLTEEQKFLIDFCQ-QTGCRINEALRLKGSDIGDNYIVLYTRKARNSNLTPRKIPKPPC 238 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGAT 303 LA KE F + + + K + + H +R A+ + Sbjct: 239 LAGYKPKKERVFSEWSNVPR-------FLEKRVKKLDMKYWTWHNLRHKYASELSKRNVP 291 Query: 304 AHELMATYGWKTVDQAETY 322 E+M G + + Y Sbjct: 292 LFEIMNLLGHSNMKTTQIY 310 >gi|218547967|ref|YP_002381758.1| integrase; DLP12 prophage [Escherichia fergusonii ATCC 35469] gi|218355508|emb|CAQ88119.1| putative integrase; DLP12 prophage [Escherichia fergusonii ATCC 35469] Length = 387 Score = 99.0 bits (245), Expect = 9e-19, Method: Composition-based stats. Identities = 54/379 (14%), Positives = 112/379 (29%), Gaps = 57/379 (15%) Query: 17 RHGK-IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75 R G+ + G+RI+ A T + Sbjct: 5 RRGEIWYASYSLPGGKRIKESL-GTKDKRQAQELHDKRKAELWRVDRLGDFPDVTFEEAC 63 Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP----- 130 + + S + + + + IT I S V + Sbjct: 64 LRWIEEKSDKK----SLDTDKGRMGFWLEHFEGVRLKDITEARIYSAVSRMHNRNHLEIW 119 Query: 131 ------------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 ++ + L M+ + + A +++ + ++ P Sbjct: 120 KAKAEAARKKGKPVPEYVAKPVTTATKAKHLALMKAILR-AAERDWKWLEKAPVIKIPTV 178 Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IF 222 + + +R KE+ ++ E + +F L +GLR S+ Q + Sbjct: 179 RNKRVRWLEKEEAKRLIDECPE--PLKSVVKFALATGLRRSNIINLEWQQIDMQRRVAWI 236 Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------------FS 270 + + K+ I V L D K+L F + K Sbjct: 237 NPEDSKSNRAIGVALNDTACKVLRDQIGNHHKFVFVHTKPARRPDGSLTPAVRKMRVDDG 296 Query: 271 IWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +KA +AG+ + H +R A+ AG L GW++++ Y A Sbjct: 297 RAWKAACRRAGIEDFRFHDLRHTWASWLIQAGVPLSVLQEMGGWESIEMVRRYAHLAPNH 356 Query: 330 RLGIKNSRRISSVVDSDDP 348 +++++I ++ + D P Sbjct: 357 --LTEHAKQIDAIFNDDVP 373 >gi|171316503|ref|ZP_02905720.1| integrase family protein [Burkholderia ambifaria MEX-5] gi|171098337|gb|EDT43142.1| integrase family protein [Burkholderia ambifaria MEX-5] Length = 342 Score = 99.0 bits (245), Expect = 9e-19, Method: Composition-based stats. Identities = 52/348 (14%), Positives = 103/348 (29%), Gaps = 35/348 (10%) Query: 1 MTPSLRLP---PFVTKERTRHGKIIYYFRKG--HGRRIRLPYPHESTFIPAYMSALTGST 55 M + P P + G + YY+ G GRRI P + + L G+ Sbjct: 1 MAGKAQTPGAIPRFRSRKNADGSLRYYYDHGEVDGRRILEPLGTDRVVALQRWAELEGAR 60 Query: 56 PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115 S T L Y + + ++ ++ + ++ GD + +T Sbjct: 61 AP-----SSETTRHTFAMLGQAY-RVRELPQKSAATQRMYDLFLSRLAAVIGDRELDTLT 114 Query: 116 TKHIRSGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 + + + +A + + ++ R + +K G + Sbjct: 115 PADVATIWRATAEKRGVVTANRTKAVLSLVLN-CGRLWGMMTIANPCAGVRGKKETGRQD 173 Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233 +D + R A + R SD R ++ +TQKTG + Sbjct: 174 ILIDDELYAAVYTVADQPLRNAMDLADLCAQRPSDVLRVQRSNIVRGNLIFRTQKTGAFV 233 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGVNKS- 285 TV++ L+ + + + + + F +AG++K+ Sbjct: 234 TVQITGDLAALIERLLAWRGSKVDVSPYLLRDEEGYPLTKGKLRSRFDKARERAGIDKAK 293 Query: 286 --AHGVRKFSATIS-----ADAGATAHELMATYGWKTVDQAETYTKGA 326 +R T +AG G Y +GA Sbjct: 294 FQFRDLRARGVTHKTIDEGLEAG------QRLAGHSGPGMTARYVRGA 335 >gi|153000208|ref|YP_001365889.1| integron integrase [Shewanella baltica OS185] gi|151364826|gb|ABS07826.1| integron integrase [Shewanella baltica OS185] Length = 319 Score = 99.0 bits (245), Expect = 9e-19, Method: Composition-based stats. Identities = 31/297 (10%), Positives = 66/297 (22%), Gaps = 50/297 (16%) Query: 80 KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 + ++ + S+ + I + T+ + + + + AI Sbjct: 13 EEMRMRGYSIRTEKSYLYWIKAFINFHHKRHPETMGTEEVAQFLTFLANQRNVAINTQKI 72 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199 + ++ L ++ + ++ + RL E L Sbjct: 73 ALNALAYLYQKHLHHELGNLGFCYATKQRYLPTVLSPSEIS--LILNELDGRDRLIIELL 130 Query: 200 LYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFM--------------- 242 SGLR S+ R +Q + +++ K L Sbjct: 131 YGSGLRVSECLRLRIQDIDIEQASLTVRDGKGHKDRQTILSHKCAIKLTAYINKAMEIQH 190 Query: 243 ------------KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA----------TKA 280 L T + + Sbjct: 191 RDNQQGIGPSLPNALERKYPNAFKQHGWMFIFPSTTTCINPYTGKLCRHHLHQSVIRKAL 250 Query: 281 G---------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 G + H R AT +G+ + G V + YT + Sbjct: 251 GNAVRNIKITKRVTCHTFRHSFATHLLQSGSDIRSVQELLGHNDVSTTQIYTHVLGQ 307 >gi|54303342|ref|YP_133335.1| bacteriophage integrase [Photobacterium profundum SS9] gi|46916772|emb|CAG23535.1| Hypothetical bacteriophage integrase [Photobacterium profundum SS9] Length = 326 Score = 99.0 bits (245), Expect = 9e-19, Method: Composition-based stats. Identities = 44/321 (13%), Positives = 105/321 (32%), Gaps = 21/321 (6%) Query: 10 FVTKERTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67 +++ ++ G+ R GRR R AY + R +I K Sbjct: 2 YMSIKKLDDGQYQVDVRPKGSEGRRYR-RKFSTKREATAYERYIQAQAHNRAWIEKSSDK 60 Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR- 126 L IS + + L ++ + + + ++ + ++T K I R Sbjct: 61 RK-LSEAISLWWRYHGQL-LKEGAQSKKK--LENLSQRMNNPMLCQVTKKRIIDYRSDRL 116 Query: 127 --KHTPSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 +P + + + + +F + +EY +P + + + K + + + + ++ Sbjct: 117 SSGISPRTINKEVALLSGVFTQMINAEEYHHEHPIIGLRKLKERKQEMAFLSSSEISFLL 176 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 + + L +G R +++ +++ + K G T + Sbjct: 177 QH--ASGDMKKIAKICLATGARWNEANDLRAENVTPYRVTFVATKNGNNRTTPISKELFD 234 Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGAT 303 ++ G+ +F ++FK+ ++ H +R A+ G Sbjct: 235 EISSEKSGRLFTPC--------YDKFYLFFKSLNFNLPKGQAVHVLRHTFASHFMQNGGN 286 Query: 304 AHELMATYGWKTVDQAETYTK 324 L G T+ Q Y Sbjct: 287 ILTLQKALGHATIQQTMEYAH 307 >gi|291542827|emb|CBL15937.1| Site-specific recombinase XerD [Ruminococcus bromii L2-63] Length = 397 Score = 99.0 bits (245), Expect = 9e-19, Method: Composition-based stats. Identities = 42/330 (12%), Positives = 94/330 (28%), Gaps = 52/330 (15%) Query: 45 PAYMSALTGSTPKREYINSPRKKPTT--LKWLISEYRKSAHWGSLAVNSRISFESYFD-- 100 A + + ++ + T + ++ ++ + ++ Sbjct: 50 EARAAKEAELEARAIERSTGKAPAGTILFTAFLLDWLDMTK-KNVEETTYGAYSMTIKSK 108 Query: 101 ---QIIRKSGDFDYRKITTKHIRSGVES----RKHTPSSAIQFLTSMRVLFKWAVRQEYV 153 ++T KHI+ R + ++ I ++R + A + + Sbjct: 109 IIPYFEEHHPGLALCEVTPKHIQDYYTYELTVRGVSANTVIHRHANIRKALQHAFKLGLI 168 Query: 154 AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213 NP +ERPK++ + +E +G L + GLR S++ Sbjct: 169 DTNPADRIERPKKEKFVGSVY-EEYELNRLFEIVKGDPIELGVILGAFYGLRRSEAVGLK 227 Query: 214 VQHLQN---------------------NIFSIKTQKTGTIITVELPDGFMKLLA------ 246 + I +T+ + ++ L F +LL Sbjct: 228 WDAIDFKKKTITIRHTVTQATIDGKSKIIQKDRTKTKSSYRSLPLVPPFEELLHRLKAQQ 287 Query: 247 ----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSAT 295 ++N + + + F K G+ K H +R A+ Sbjct: 288 ELNQKLCGRSYCKKYTGYIYVNEIGELVKPGYLTQHFPLILQKNGMRKIRFHDLRHSCAS 347 Query: 296 ISADAGATAHELMATYGWKTVDQA-ETYTK 324 + G + E+ G + YT Sbjct: 348 LLYANGVSLKEIQEWLGHSDISTTSNIYTH 377 >gi|270293959|ref|ZP_06200161.1| tyrosine type site-specific recombinase [Bacteroides sp. D20] gi|270275426|gb|EFA21286.1| tyrosine type site-specific recombinase [Bacteroides sp. D20] Length = 379 Score = 99.0 bits (245), Expect = 9e-19, Method: Composition-based stats. Identities = 41/241 (17%), Positives = 81/241 (33%), Gaps = 13/241 (5%) Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER---PKRK 167 + + + ++ +L ++R AV ++Y+ +NP ++ PKR Sbjct: 141 IDYLKKTKQEHCKKEKTLHVNTQFYYLKTLRYCLNRAVSEDYITVNPMNKIKNEDKPKRN 200 Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--- 224 T +++ + R AF F + GLR D + ++ + Sbjct: 201 RTERDYLTIKELTRLVHTPFYNILLRKAFLFSCFCGLRHCDIIALRWEDIRYDENGNALL 260 Query: 225 --KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 +KT I++ L +K L ET + + + +AG+ Sbjct: 261 SIIQKKTKEAISLPLCSEAIKHLPDRGNAPETEKVFAGLVSLGRSNV--ILHKWVEQAGI 318 Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSRRI 339 + + H R AT+ G + + G + + Y K D + I I Sbjct: 319 SKHVTFHTARHTHATMMLTLGVDLYTVSKLLGHTNIQTTQIYAKLVDESKKKAIDLIPNI 378 Query: 340 S 340 S Sbjct: 379 S 379 >gi|257422176|ref|ZP_05599166.1| recombinase [Enterococcus faecalis X98] gi|312951221|ref|ZP_07770123.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0102] gi|257164000|gb|EEU93960.1| recombinase [Enterococcus faecalis X98] gi|310630755|gb|EFQ14038.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0102] gi|315031051|gb|EFT42983.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0017] Length = 382 Score = 99.0 bits (245), Expect = 9e-19, Method: Composition-based stats. Identities = 53/375 (14%), Positives = 119/375 (31%), Gaps = 43/375 (11%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP---- 64 +V + G + +R + ++ + +A + + + Sbjct: 11 KYVFSYSNKKG-TFWGYRYPYYNSLKHRKEASKRGFESERAANKALLKIQYALETQNTSF 69 Query: 65 -RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKI-----TTK 117 K T+ I + A + +V+++ + ES I G+ + + Sbjct: 70 IENKQLTIDEWIDVWIPYAQ-DNWSVSTKQNIESAIKFHISPLIGNQKLSSLNKITYKRE 128 Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 I + K+T S+ + + + AV + + N + KE Sbjct: 129 FIDKLRQKNKYTESTIQTWHKIVMRMINAAVHNQIIPSNTLTGFKF-DLSNNVRSFSKKE 187 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI------------K 225 + +E Q ++ F LL SG+R + + N K Sbjct: 188 LQRFVAVLENEDIQTQVIFLTLLKSGMRKGELMGLRWNDIDLNEKYFDINSTRGDYGENK 247 Query: 226 TQKTGTIITVELPDGFMKLLAMTPIG--------------KETFFINNDKQKMNATQFSI 271 + +I V + + L+ K+ F +++ + ++ + Sbjct: 248 PKTKTSIRKVYFDNSLLTLIKKYKNHEKERLLREGIILREKDYFILSSRNLPIKQSRITY 307 Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA-DR 328 F+ KA V N + HG+R AT +AGA + G K ++ + Y+ + Sbjct: 308 IFRLLCEKAEVQNITVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVYSDVLKEE 367 Query: 329 IRLGIKNSRRISSVV 343 + ++ + Sbjct: 368 EKETADMMDKLIENL 382 >gi|258649068|ref|ZP_05736537.1| integrase [Prevotella tannerae ATCC 51259] gi|260850700|gb|EEX70569.1| integrase [Prevotella tannerae ATCC 51259] Length = 438 Score = 99.0 bits (245), Expect = 9e-19, Method: Composition-based stats. Identities = 38/294 (12%), Positives = 93/294 (31%), Gaps = 23/294 (7%) Query: 70 TLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIR 120 TL L ++ S++V + + D ++T I Sbjct: 139 TLMQLFEKHNTDIQEQVGVSVSVATLQKYNVCKKHFAAFLNEKYKRCDIRLSELTFTVIH 198 Query: 121 SGVESRKHT----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + T P++A + + + + + + + +P ++ + T Sbjct: 199 DFDIYLRTTAGQNPNTATKTMKTFKTITILGRKMGALNHDPFINH-HFHLEPVNRGFLTD 257 Query: 177 EDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233 E++ + + ++ R F F ++GL D ++ Sbjct: 258 EEIMKIANKDFGINRLELVRDVFIFSCFTGLAYIDVSNLTPDNIVTLDDKQWIMTKRQKT 317 Query: 234 TVELPDGFMKL--LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 +VE + + +T G +T+ + + + + K A G+ K + H Sbjct: 318 SVETNVLLLDIPKRIITKYGHKTYRDGKLLPVLTNQKINAYLKEIADLCGIKKRLTFHLA 377 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI--RLGIKNSRRISS 341 R AT+S G + G + + Y + ++ + + ++S Sbjct: 378 RHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKIEHDMEELAGKLSK 431 >gi|23455720|ref|NP_695029.1| Integrase [Lactococcus phage r1t] gi|1353518|gb|AAB18676.1| Integrase [Lactococcus phage r1t] Length = 374 Score = 99.0 bits (245), Expect = 9e-19, Method: Composition-based stats. Identities = 41/353 (11%), Positives = 99/353 (28%), Gaps = 44/353 (12%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTP-KREYINSPRKKPTTLK 72 + R Y + RL ST A A+ + K+ +I P K+ + Sbjct: 4 YQKRGKTWQYSISRTKQGLPRLTKGGFSTKSDAQAEAMDIESKLKKGFIVDPIKQEIS-- 61 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132 ++ + ++ + +E + + +IT + + T + Sbjct: 62 EYFKDWMELYKKNAIDEMTYKGYEQTLKYLKTYMPNVLISEITASSYQRALNKFAETHAK 121 Query: 133 AIQ--FLTSMRVLFKWAVRQEYVAINPC-----LSVERPKRKTEGIRPWTKEDMQQFKSF 185 A F T +R + + + + + K + + + + Sbjct: 122 ASTKGFHTRVRASIQPLIEEGRLQKDFTTRAVVKGNGNDKAEQDKFVNFDEYKQLVDYFR 181 Query: 186 WSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------- 234 + +G+R S++ ++ + IK +T Sbjct: 182 NRLNPNYSSPTMLFIISITGMRASEAFGLVWDDIKFDNNVIKCHRTWNYRNKVGGFKKPK 241 Query: 235 -------VELPDGFMKLLAMTPIG-------------KETFFINNDKQKMNATQFSIWFK 274 + + D M+LL + + ++ + + + Sbjct: 242 TDAGIRDIVIDDESMQLLKYFREQQKTLFESLGIKPIHDFVCYHPYRKIITLSALQNTLE 301 Query: 275 AKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 K + + HG+R A++ G + G +V +TY Sbjct: 302 HALKKLKISTPLTVHGLRHTHASVLLYHGVDIMTVSKRLGHASVAITQQTYIH 354 >gi|116511837|ref|YP_809053.1| integrase [Lactococcus lactis subsp. cremoris SK11] gi|116107491|gb|ABJ72631.1| Integrase [Lactococcus lactis subsp. cremoris SK11] Length = 374 Score = 99.0 bits (245), Expect = 9e-19, Method: Composition-based stats. Identities = 42/353 (11%), Positives = 100/353 (28%), Gaps = 44/353 (12%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTP-KREYINSPRKKPTTLK 72 + R Y + RL ST A A+ + K+ +I P K+ + Sbjct: 4 YQKRGKTWQYSISRTKQGLPRLTKGGFSTKSDAQAEAMDIESKLKKGFIVDPIKQEIS-- 61 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132 ++ + ++ + +E + + +IT + + T + Sbjct: 62 EYFKDWMELYKKNAIDEMTYKGYEQTLKYLKTYMPNVLISEITASSYQRALNKFAETHAK 121 Query: 133 AIQ--FLTSMRVLFKWAVRQEYVAINPC-----LSVERPKRKTEGIRPWTKEDMQQFKSF 185 A F T +R + + + + + K + + + + Sbjct: 122 ASTKGFHTRVRASIQPLIEEGRLQKDFTTRAVVKGNGNDKAEQDKFVNFDEYKQLVDYFR 181 Query: 186 WSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------- 234 + +G+R S++ + N +IK ++T Sbjct: 182 NRLNPNYSSPTMLFIISITGMRASEAFGLVWDDIDFNNNTIKCRRTWNYRNKVGGFKKPK 241 Query: 235 -------VELPDGFMKLLAMTPIG-------------KETFFINNDKQKMNATQFSIWFK 274 + + D M+LL + + ++ + + + Sbjct: 242 TDAGIRDIVIDDESMQLLKDFREQQKTLFESLGIKPIHDFVCYHPYRKIITLSALQNTLE 301 Query: 275 AKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 K + + HG+R A++ G + G +V +TY Sbjct: 302 HALKKLNISTPLTVHGLRHTHASVLLYHGVDIMTVSKRLGHASVAITQQTYIH 354 >gi|323485587|ref|ZP_08090931.1| phage integrase family Site-specific recombinase [Clostridium symbiosum WAL-14163] gi|323401105|gb|EGA93459.1| phage integrase family Site-specific recombinase [Clostridium symbiosum WAL-14163] Length = 320 Score = 99.0 bits (245), Expect = 9e-19, Method: Composition-based stats. Identities = 26/259 (10%), Positives = 64/259 (24%), Gaps = 12/259 (4%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134 I +YR +++ N+ + Q + Y + + + P + Sbjct: 55 IEDYRLYLSAQNMSENTIHVYAYAIRQFFALYHEITYSNLK---LYKVFLLEHYKPQTVN 111 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194 + ++ ++ + + + + Sbjct: 112 LRIRALNSYIEFKKLNPGKIPMVRIQHKNYLDNVISEADYEYLKNCLLRDEKYL---YYF 168 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL---PDGFMKLLAMTPIG 251 F+ +G R S+ + + + I ++ + L Sbjct: 169 IIRFMAATGARVSEVIQFEAEDIFTGYKDIYSKGNKLRRIYVPKALQKDAIAWLKAIRQE 228 Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELM 308 + F+N + K A G+N H R A + L Sbjct: 229 RGFVFLNRYGNPITPGGIRGQLKNMALAYGMNPEVVHPHSFRHRFAKSFIEKCGDISLLS 288 Query: 309 ATYGWKTVDQAETYTKGAD 327 G K ++ Y + + Sbjct: 289 DLLGHKNLETTRIYLRRSS 307 >gi|312969130|ref|ZP_07783337.1| integrase [Escherichia coli 2362-75] gi|312286532|gb|EFR14445.1| integrase [Escherichia coli 2362-75] Length = 350 Score = 99.0 bits (245), Expect = 9e-19, Method: Composition-based stats. Identities = 43/330 (13%), Positives = 85/330 (25%), Gaps = 30/330 (9%) Query: 14 ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + GK + Y GRR+R A+ T + ++ TL Sbjct: 4 RKLTTGKWLCECYPAGRSGRRVR-KQFATKGEALAFERHTMEETEAKPWLGESVD-RRTL 61 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----- 126 K ++ + K H SL + ++ ++ G+ +T+K + R Sbjct: 62 KDVVELWFK-LHGKSLTAG-QHVYDKLL-LMVDALGNPLATDLTSKMFAHYRDKRLTGEI 118 Query: 127 --------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 +P + + + +F R + L R E W + Sbjct: 119 YFSEKWKKGASPVTINLEQSYLSSVFSELSRLGEWSYPNPLENMRKFTIAEKEMAWLTHE 178 Query: 179 MQQFKSFWSEGSQPRLAFE--FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 + P LA L +G R + + + K ++ Sbjct: 179 QIVELLADCKRQDPILALVVKICLSTGARWREDVNLTRSQVTKYRITFVRAKGKKNRSIP 238 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296 + + + F + + + H +R A Sbjct: 239 ISKELYEEIMALDGFNFFTDCYFQ--------FLSVMEKTSIVLPRGQLTHVLRHTFAAH 290 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326 +G L G + Y A Sbjct: 291 FMMSGGNILALQKILGHHDIKMTMRYAHLA 320 >gi|301162158|emb|CBW21703.1| putative phage integrase/recombinase [Bacteroides fragilis 638R] Length = 308 Score = 99.0 bits (245), Expect = 9e-19, Method: Composition-based stats. Identities = 35/301 (11%), Positives = 92/301 (30%), Gaps = 33/301 (10%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFD-YRKITTKHIRSGVESRK 127 T++ + +R++ + ++ ++ + I+ K G+ + + + Sbjct: 5 TIREISDAWRENKRPY-VKQSTLAAYMLILENHILPKFGESNELHENDVQGFVLEKLEGG 63 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + S L ++++ K+ V+ E++ + + + + ++ ++ Sbjct: 64 LSMKSVKDILIVLKMVMKFGVKNEWMNYYEWDIKYPTDVAGKKLEVLSVANHKKILNYIQ 123 Query: 188 EG-SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246 S P L L +GLR + C + + +T I + + L Sbjct: 124 SHFSFPGLGIYISLSTGLRIGEICALKWSDINVYDGILTVNRTIERIYIIEGERKHTELV 183 Query: 247 MTPIGKETFFI--------------------------NNDKQKMNATQFSIWFKAKATKA 280 + + ND+ + ++K K Sbjct: 184 INTPKTKNSCREIPINKELLTMLKPLKKVVNDDYYILTNDECPTEPRTYRNYYKRLMEKL 243 Query: 281 GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLGIKNSR 337 + K HG+R AT + G + G + + Y ++ + I Sbjct: 244 DIPKLKYHGLRHSFATRCIEVGCDYKTVSVLLGHSNISTTLDLYVHPNMEQKKRCIAKVF 303 Query: 338 R 338 + Sbjct: 304 K 304 >gi|300854163|ref|YP_003779147.1| phage related integrase [Clostridium ljungdahlii DSM 13528] gi|300434278|gb|ADK14045.1| phage related integrase [Clostridium ljungdahlii DSM 13528] Length = 336 Score = 99.0 bits (245), Expect = 9e-19, Method: Composition-based stats. Identities = 38/291 (13%), Positives = 81/291 (27%), Gaps = 37/291 (12%) Query: 71 LKWLISEYRKSA--HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT------------ 116 + ++ Y + + N+ S+ F R F KI Sbjct: 6 FSYYVTRYFTNYLDREAGFSPNTIKSYRDTFILFFRYIELFRICKINKLNMDILSADNVN 65 Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + + R+ T SS Q L +++ + +R+ + C V + K + Sbjct: 66 DFLNWIEKERQCTVSSRNQRLAALKSFCIYVIRENPEKSDICQQVLGIRAKKATQKSIGY 125 Query: 177 EDM-------QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQ 227 ++ + G + L +G R + + + I + T Sbjct: 126 LNIEAISYLLKMPDKTSDRGIRDLALLALLYETGCRVQEIIDLKIGDISFRIPNTVALTG 185 Query: 228 KTGTIITVELPDGFMKLLAMT------PIGKETFFINNDKQKMNATQFSIWFKAKATKA- 280 K I V + +++ +E F+N ++ + + A Sbjct: 186 KGNKIRVVPISQQVSEIIKNYLSISTRHNFEENIFVNRLGNPLSRSGVAYILNKYGDMAR 245 Query: 281 -------GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R A + + G +V E Y + Sbjct: 246 KNRLDLYPYKLHPHILRHSKAMHLLENNVNLIYIRDFLGHSSVTTTEIYAR 296 >gi|257452045|ref|ZP_05617344.1| putative integrase [Fusobacterium sp. 3_1_5R] gi|317058593|ref|ZP_07923078.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R] gi|313684269|gb|EFS21104.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R] Length = 329 Score = 99.0 bits (245), Expect = 9e-19, Method: Composition-based stats. Identities = 35/278 (12%), Positives = 88/278 (31%), Gaps = 12/278 (4%) Query: 57 KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD---FDYRK 113 K E + + T + L++ + + + S ++ + ++ G + Sbjct: 37 KIEKNDFMEEDIWTNERLLNTFLSAKRVEGCSEKSLSYYQKTIETMLNSIGKEIKYIVTD 96 Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 ++ ++ + + + F W ++Y+ +P + + K + Sbjct: 97 DLRSYLTEYQSEKQSSRVTIDNIRRILSSFFSWLEDEDYILKSPVRRIHKVKTISSIKDT 156 Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTI 232 ++ E++++ + E + + L +G+R + Q +Q I K Sbjct: 157 YSDEELERMRDSCHE-IRDLALIDILASTGMRVGELVLLNRQDIQFGERECIVFGKGDKE 215 Query: 233 ITVELPDGFMKLLAMTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-S 285 V L + ++ + + + +NK Sbjct: 216 RVVYFDARTKIHLQNYLNTRVDSNPALFVALRKPYNRLTIGGIEVRLRKIGKELEINKVH 275 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 H R+ ATI+ D G +L G + +D Y Sbjct: 276 PHKFRRTLATIAIDKGMPIEQLQKLLGHRRIDTTLQYA 313 >gi|241992549|gb|ACS73618.1| IntI1 [uncultured bacterium] Length = 330 Score = 99.0 bits (245), Expect = 9e-19, Method: Composition-based stats. Identities = 36/329 (10%), Positives = 85/329 (25%), Gaps = 54/329 (16%) Query: 49 SALTGSTPKREYINSPRKKPTTLKW--LISEYRKSAHWGSLAVNSRISFESYFDQIIRKS 106 +A +R +P + L+ L+ + R+ ++ + ++ + IR Sbjct: 4 AAPRSLPDRRLLRPAPVVELPALRAVRLLDQMRERLRMLHYSMRTEEAYLHWCKAFIRFH 63 Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSA-IQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165 G ++ + + + A ++ + + + + RP Sbjct: 64 GRRHPAEMAGPEVEAFLTHLAADRGLAPSSHRQALSAVLFLYGKVLGQQLPWMQDIGRPV 123 Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--- 222 K + ++++ G LA +GLR +++ + V+ L Sbjct: 124 PKRRLPVVLSVPEVREVL-AQMTGEHLLLAQLL-YGTGLRITEALQLRVKDLDFGHRAVI 181 Query: 223 --------------------------------------------SIKTQKTGTIITVELP 238 + + Sbjct: 182 VREGKGAKDRVVMLPQSLMPALREQLGRVRAVWAADVEAGTAGVEMPHALDRKYPRMGAS 241 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296 + + + + + F FK AG+ K + H +R AT Sbjct: 242 WAWFWVFPQDHHSTDPRSGVIRRHHLYDQTFQRAFKRAVVAAGIEKPATPHTLRHSFATH 301 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKG 325 +G+ + G V YT Sbjct: 302 LLQSGSDIRTVQELLGHADVATTMIYTHV 330 >gi|82703133|ref|YP_412699.1| Phage integrase [Nitrosospira multiformis ATCC 25196] gi|82411198|gb|ABB75307.1| Phage integrase [Nitrosospira multiformis ATCC 25196] Length = 329 Score = 99.0 bits (245), Expect = 9e-19, Method: Composition-based stats. Identities = 44/298 (14%), Positives = 91/298 (30%), Gaps = 48/298 (16%) Query: 79 RKSAHWGSLAV--------------NSRISFESYFDQIIRKSGDFDYRK---ITTKHIRS 121 SA + LA +R ++++ + +G IT H+ + Sbjct: 21 LTSAQFRKLAEVPPEIEWFANIDSLQTRRAYQNDLRGFMAFAGIVSPEDFRLITRSHVLA 80 Query: 122 GVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + ++ + L ++ LF++ V NP V+RP ++ + D Sbjct: 81 WRKRLEEEQLGGATIRRKLAALSSLFEYLCEANAVTHNPVKGVKRPPVESWQGKTPALGD 140 Query: 179 MQQ------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-- 230 +Q + +G + R LLY G+R + R V+ + + + Sbjct: 141 VQARALLEAPNAKTLKGKRDRAILSALLYHGIRREELARLKVKDYNQSRRGVPHLRIKGK 200 Query: 231 --TIITVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSI-WF 273 + + G + L+ + + + Sbjct: 201 GGKMRFIPTHPGTLTLIEEYLEAAGHGHDPDAPLFRPVKNNVHGHTLTALTPDSIYFEVV 260 Query: 274 KAKATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 K G+ N H +R +AT + D GA ++ G + Y R Sbjct: 261 LKYLRKLGIFGENMGPHVMRATAATNALDNGADIAKVQEWLGHANIATTRIYDHRKTR 318 >gi|72537678|ref|YP_293708.1| prophage integrase [Burkholderia phage phi52237] gi|72398368|gb|AAZ72603.1| prophage integrase [Burkholderia phage phi52237] Length = 441 Score = 99.0 bits (245), Expect = 9e-19, Method: Composition-based stats. Identities = 43/324 (13%), Positives = 102/324 (31%), Gaps = 24/324 (7%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 +R ++G ++ G RIR S A A ++ + T Sbjct: 53 KRQKNG-PWWFDLSIDGSRIR-QSSGTSDRRAAEELAAKVASDYWRQKKLGERPAVTWDA 110 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR------- 126 + + K ++ + + + R I + I++ +E++ Sbjct: 111 AVVHWLKQNQHQRSLETTKQR----LRWLTDQLKGENVRNIDRERIQALIETKAAEKYRG 166 Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 ++ + + ++ V+ + ++ P + + + + + T+ Q+ Sbjct: 167 SPVAGATVNRHMAALSVILHHCHAEGWIDAVP--PIRKLRENSARLTWLTRAQAQRLL-- 222 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGF 241 + R F L +GLR S+ + K G +I+V L + Sbjct: 223 EELPTHLRQMARFALATGLRESNVRLLEWAQVDRERALAWIHADQAKAGKVISVPLNEDA 282 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADA 300 + +L + + + ++ ++ +AG+ H +R A+ A Sbjct: 283 LGVLREQQGQHKRYVFVYKGAPI-GRIYNHAWQKACVRAGLSGLRFHDLRHTWASWHVQA 341 Query: 301 GATAHELMATYGWKTVDQAETYTK 324 G L GW + Y Sbjct: 342 GTPLPILQQLGGWASYQMVLRYAH 365 >gi|255012221|ref|ZP_05284347.1| putative integrase/transposase [Bacteroides fragilis 3_1_12] gi|313150062|ref|ZP_07812255.1| integrase [Bacteroides fragilis 3_1_12] gi|313138829|gb|EFR56189.1| integrase [Bacteroides fragilis 3_1_12] Length = 393 Score = 99.0 bits (245), Expect = 9e-19, Method: Composition-based stats. Identities = 43/270 (15%), Positives = 86/270 (31%), Gaps = 18/270 (6%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 I+ +R SL +++ + S + + D + +T + I S + Sbjct: 107 FIAFFRNEIAKSSLKESTKRNHLSTLELLRGYKKDVSFSDLTFEFISSFDHYLQQKGYHT 166 Query: 134 IQFLTSMRVLFKWAV----RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 M+ L + ++ + K + E++ + +S +G Sbjct: 167 NTIAKHMKHLKRHINVAINKEYMEIQKYAFRKYKIKSIENSHTHLSPEELGKIESLELDG 226 Query: 190 SQPRL-----AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 +L AF F Y+GLR SD +++ + Sbjct: 227 RFMKLEKTKDAFLFCCYAGLRYSDFTNLSPENIVKMHQET--WLIYKSVKTNTEVRLPLY 284 Query: 245 LAMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297 L K + + + + + + A +G+NK S H R +AT+ Sbjct: 285 LLFEGKGIEVLNKYQDNLADFFKLRDNSNVNKELLIIAKLSGLNKRISFHTARHTNATLL 344 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGAD 327 +G + G K+V + YT D Sbjct: 345 IYSGVNITTVQKLLGHKSVKTTQVYTNIMD 374 >gi|309808160|ref|ZP_07702071.1| site-specific recombinase, phage integrase family [Lactobacillus iners LactinV 01V1-a] gi|308168596|gb|EFO70703.1| site-specific recombinase, phage integrase family [Lactobacillus iners LactinV 01V1-a] Length = 329 Score = 99.0 bits (245), Expect = 9e-19, Method: Composition-based stats. Identities = 33/276 (11%), Positives = 78/276 (28%), Gaps = 14/276 (5%) Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119 T + ++ + + + S + + + + K + R++ T + Sbjct: 40 ETEEEVNAELTNEQFLNNFLAAKRIEGCSEKSLTYYRATIEVMTTKI-KKNVREMETDDL 98 Query: 120 R----SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 R + + + + F W + Y+ +P + + K +T Sbjct: 99 RTYLTEYQHEKNSSKVTVDNIRRILSSFFSWLEDENYILKSPARRIHKVKAALTIKETYT 158 Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIIT 234 E +++ + E + + L +G+R + + Sbjct: 159 DEALEKMRDSC-EEPRDLALIDILASTGMRVGELVLLNRDDINFEERECVVFGKGSKERM 217 Query: 235 VELPDGFMKLLAMTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAH 287 V L G+ +++ + K + K H Sbjct: 218 VYFDARTKIHLLTYLQGRTDDNPALFVSLRAPHERLRIGGVECRLRELGNKLNIEKVHPH 277 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 R+ AT++ D G +L G K +D Y Sbjct: 278 KFRRTLATMAIDKGMPIEQLQQLLGHKRIDTTLQYA 313 >gi|331662209|ref|ZP_08363132.1| integrase for prophage [Escherichia coli TA143] gi|331060631|gb|EGI32595.1| integrase for prophage [Escherichia coli TA143] Length = 351 Score = 99.0 bits (245), Expect = 9e-19, Method: Composition-based stats. Identities = 43/330 (13%), Positives = 91/330 (27%), Gaps = 30/330 (9%) Query: 14 ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + GK + Y GRR+R A+ G + ++ TL Sbjct: 4 RKLTTGKWLCECYPAGRSGRRVR-KQFATKGEALAFERYTMGEIEAKPWLGESVD-RRTL 61 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----- 126 K ++ + K H SL + + ++ G+ +T+K + R Sbjct: 62 KDMVELWFK-LHGKSLTAG-QHVYNKLL-LMVDALGNPLATDLTSKMFAHYRDKRLTGEI 118 Query: 127 --------KHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKE 177 +P + + + +F+ R E+ NP + + + + T E Sbjct: 119 YFSEKWKKGASPVTVNLEQSHLSSVFRELSRLGEWTLPNPLEKMRKFTIAEKEMAWLTHE 178 Query: 178 DMQQFKSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 + + S L + L +G R ++ + + K ++ Sbjct: 179 QIIELLSDCKRQNPILALVVKICLSTGARWREAINLTRSQVTKYRITFVRTKGKKNRSIP 238 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296 + + + F + + + H +R A Sbjct: 239 ISKELYEEIMALDGFNFFTDCYFQ--------FLSVMEKTSIVLPRGQLTHVLRHTFAAH 290 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326 +G L G + Y A Sbjct: 291 FMMSGGNILALQKILGHHDIKMTMRYAHLA 320 >gi|163759730|ref|ZP_02166815.1| site-specific recombinase, phage integrase family protein [Hoeflea phototrophica DFL-43] gi|162283327|gb|EDQ33613.1| site-specific recombinase, phage integrase family protein [Hoeflea phototrophica DFL-43] Length = 364 Score = 99.0 bits (245), Expect = 9e-19, Method: Composition-based stats. Identities = 40/335 (11%), Positives = 93/335 (27%), Gaps = 28/335 (8%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 +TR G R+ G+ + + ++ E ++ T+ L Sbjct: 6 KTRQGHWRAQVRRK-GKYVSNTFRLKTQAHEWVRDIEHLIDIGGEPKRQSGRRAQTVGAL 64 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPS 131 + + + A+ R S + + + R G ++ + + R P Sbjct: 65 VDLHLEDLKEVGRAI--RRSKMAVMEALKRDLGTVRIDRLDRARLIQYGKQRAAEGAGPV 122 Query: 132 SAIQFLTSMRVLFKWAVRQEYVA--------INPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + L+ +R + A V L+ ++ ED Sbjct: 123 TLAVDLSYLRTVLTHAAAVHGVHVDTESIRLARTALARLGLVGRSHERDRRPTEDEIDAL 182 Query: 184 SFWSEGSQPRLAFE-----FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 + + + F + + +R + C+ + + + + E Sbjct: 183 LGYFDNKTNMIIPMGRIVRFAIATAMRQEEVCKIEWSDVDLSKRVVTIRNRKDPRNKEGN 242 Query: 239 DGFMKLLAMTPIGKET--------FFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGV 289 + LL +T I ++ F+ G+ + H + Sbjct: 243 HQKVPLLNLTGIDAWQLLLEQKVLTGGIGRCFPYHSKSVGTAFRRARKHLGIEDLRFHDL 302 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R + + +AG + + G K YT Sbjct: 303 RHEATSRLFEAGLSIERVALVTGHKDWKMLRRYTH 337 >gi|315608474|ref|ZP_07883461.1| integrase [Prevotella buccae ATCC 33574] gi|315249800|gb|EFU29802.1| integrase [Prevotella buccae ATCC 33574] Length = 438 Score = 99.0 bits (245), Expect = 9e-19, Method: Composition-based stats. Identities = 38/296 (12%), Positives = 94/296 (31%), Gaps = 25/296 (8%) Query: 70 TLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIR 120 TL L ++ S++V + + D ++T I Sbjct: 139 TLMQLFEKHNTDIQEQVGVSVSVATLQKYNVCKKHFAAFLNEKYKRCDIRLSELTFTVIH 198 Query: 121 SGVESRKHT----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + T P++A + + + + + + + +P ++ + T Sbjct: 199 DFDIYLRTTAGQNPNTATKTMKTFKTITILGRKMGVLNHDPFINH-HFHLEPVNRGFLTD 257 Query: 177 EDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233 E++ + + ++ R F F ++GL D ++ Sbjct: 258 EEIMKIANKDFGINRLELVRDVFIFSCFTGLAYIDVSNLTPDNIVTLDDKQWIMTKRQKT 317 Query: 234 TVELPDGFMKL--LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 +VE + + +T G +T+ + + + + K A G+ K + H Sbjct: 318 SVETNVLLLDIPKRIITKYGHKTYRDGKLLPVLTNQKINAYLKEIADLCGIKKRLTFHLA 377 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN-SRRISSVVD 344 R AT+S G + G + + Y + ++ I++ ++ + Sbjct: 378 RHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKK---IEHDMEELAGKLG 430 >gi|119384024|ref|YP_915080.1| phage integrase family protein [Paracoccus denitrificans PD1222] gi|119373791|gb|ABL69384.1| phage integrase family protein [Paracoccus denitrificans PD1222] Length = 323 Score = 99.0 bits (245), Expect = 9e-19, Method: Composition-based stats. Identities = 35/275 (12%), Positives = 85/275 (30%), Gaps = 35/275 (12%) Query: 90 NSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRKHTPSSAIQFLTSMRVLF 144 N+ +++ + D +T + S +++ + ++ + L+++R L Sbjct: 28 NTLLAYGRDLRDFVDWLAARDETLLTVPREGVEDYLSHCDAQGLSRATRARRLSAIRQLT 87 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-------WSEGSQPRLAFE 197 ++A+ + + +P + P R + + ++Q +E ++ + E Sbjct: 88 RFALDEGWREDDPAGRISGPGRAQRLPKVLDRAEVQAMLDALPRIGRNETERARNLVLVE 147 Query: 198 FLLYSGLRCSDSC--------------------RAGVQHLQNNIFSIKTQKTGTIITVEL 237 + +G+R S+ ++ Sbjct: 148 LVYATGMRVSELVSLPVGACRGDPALLLIRGKGGKERMVPLSDPARRALAAWLKRRDDAP 207 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSA 294 + + L + F + + M + A AG++ S H +R A Sbjct: 208 AESPLGRLVAGKGARWLFPAPSREGHMTRQAMNALLGQLALAAGIDPARVSPHVIRHAFA 267 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 T + GA + G + E YT D Sbjct: 268 THLLEGGADLRAIQTLLGHADLGTTEIYTHVMDTR 302 >gi|300775106|ref|ZP_07084968.1| integrase [Chryseobacterium gleum ATCC 35910] gi|300505846|gb|EFK36982.1| integrase [Chryseobacterium gleum ATCC 35910] Length = 308 Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 35/303 (11%), Positives = 92/303 (30%), Gaps = 33/303 (10%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDF-DYRKITTKHIRSGVESRKH 128 L +I ++ + +S ++ + ++ G+ + + Sbjct: 7 LSEVIDLWKIDKK-QYVKKSSFSAYTLLIENHLLPNFGNKIAIEEADVQSFVFQKLETGL 65 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + + L ++++ K+ + +++ P +R+ I TK D ++ ++ E Sbjct: 66 SHKTIKDILIVLKMILKFGAKNKWLQYTPFDIQFPTEREKHNIEVLTKTDQKKIMNYIQE 125 Query: 189 GSQPRLAFEFLLYS-GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL-- 245 R ++ S G+R + C + + + I +T I V L Sbjct: 126 HFTFRNLGVYICLSAGMRIGEVCALTWEDIDTDNGIISINRTIQRIYVIEDGTRRTELIL 185 Query: 246 ------------------------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 + + F + ND + + ++K + Sbjct: 186 DTPKTKNSIREIPISKDLLRILKPFKKIVNQSFFVLTNDAKPTEPRTYRSYYKNLMKELK 245 Query: 282 VN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLGIKNSRR 338 + HG+R AT ++ + G + Y ++ + I+ + Sbjct: 246 MPELKFHGLRHSFATRCIESNCDYKTVSVLLGHSNISTTLNLYVHPNMEQKKKAIEQMFK 305 Query: 339 ISS 341 Sbjct: 306 ALR 308 >gi|168489338|ref|ZP_02713537.1| integrase [Streptococcus pneumoniae SP195] gi|183572289|gb|EDT92817.1| integrase [Streptococcus pneumoniae SP195] gi|332071706|gb|EGI82199.1| phage integrase family protein [Streptococcus pneumoniae GA17570] Length = 388 Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 50/386 (12%), Positives = 115/386 (29%), Gaps = 56/386 (14%) Query: 11 VTKERTRHGKIIYY------FRKGHGRRIRLP-YPHESTFIPAYMSALTGSTPKREYINS 63 +T+ + G +Y G++++ + A K Sbjct: 3 ITEYTKKDGSTVYRSSVYLGIDTVTGKKVKTTISGRTKRELKAKALQAQIDFEKGGATVY 62 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSG 122 + T L+ + ++ ++ ++ + + ++ G++ K+T I+ Sbjct: 63 KAVEIKTYAELVENWLETY-CHTVKKSTLMGTKFKIDKYLLPAFGNYRLDKLTPPIIQKQ 121 Query: 123 VESRKHTPSSAIQ-------FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 V + + + + + K+AV + + NP V P+RK + + Sbjct: 122 VNQWAKDYNQLGKGFQEYPLLHSLNKRILKYAVSLQAIPFNPARDVIVPRRKEKEGQKLK 181 Query: 176 KEDMQQ---------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI---FS 223 D + + ++ LL +GLR + + Sbjct: 182 YLDDDNLKKFLTYLEQLPNTYKNFYDTVLYKTLLATGLRIRECLALKWSDIDLKNGTLDV 241 Query: 224 IKTQKTGTIITVELPDGFMKLLA---------------------MTPIGKETFFINNDKQ 262 KT IT ++++ + E F N+ + Sbjct: 242 NKTLNIIKEITGPKTKSSIRVIDLDNKTVLMLRLYKARQSQIGKEMGLTYEKVFSNSFDK 301 Query: 263 KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE- 320 ++A S +AG + + H R A+I +AG E+ G + Sbjct: 302 HIDARMLSFRLVKHLERAGCPRFTFHAFRHTHASILLNAGLPYKEIQIRLGHAKLSMTMD 361 Query: 321 TYTKGA-DRIRLGIK----NSRRISS 341 Y+ + D + ++ S Sbjct: 362 IYSHLSKDNQKNATSFYEKAIEKLKS 387 >gi|170020796|ref|YP_001725750.1| integrase family protein [Escherichia coli ATCC 8739] gi|169755724|gb|ACA78423.1| integrase family protein [Escherichia coli ATCC 8739] Length = 350 Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 43/330 (13%), Positives = 86/330 (26%), Gaps = 30/330 (9%) Query: 14 ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + GK + Y GRR+R A+ T + ++ TL Sbjct: 4 RKLTTGKWLCECYPAGRSGRRVR-KQFATKGEALAFERHTMEETEAKPWLGESVD-RRTL 61 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----- 126 K ++ + K H SL + ++ ++ G+ +T+K + R Sbjct: 62 KDVVELWFK-LHGKSLTAG-QHVYDKLL-LMVDALGNPLATDLTSKMFAHYRDKRLTGEI 118 Query: 127 --------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 +P + + + +F R + L R E W + Sbjct: 119 YFSEKWKKGASPVTINLEQSYLSSVFSELSRLGEWSYPNPLENMRKFTIAEKEMAWLTHE 178 Query: 179 MQQFKSFWSEGSQPRLAFE--FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 + P LA L +G R ++ + + K ++ Sbjct: 179 QIVELLADCKRQDPILALVVKICLSTGARWREAVNLTRSQVTKYRITFVRTKGKKNRSIP 238 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296 + + + F + + + H +R A Sbjct: 239 ISKELYEEIMALDGFNFFTDCYFQ--------FLSVMEKTSIVLPRGQLTHVLRHTFAAH 290 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326 +G L G + Y A Sbjct: 291 FMMSGGNILALQKILGHHDIKMTMRYAHLA 320 >gi|76803916|gb|ABA55859.1| IntI [Vibrio sp. DAT722] Length = 320 Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 32/301 (10%), Positives = 86/301 (28%), Gaps = 53/301 (17%) Query: 79 RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138 ++ A + ++ + + I K+ + + A++ Sbjct: 10 KEHMISRHYAKKTIETYLFWIKRYIVFHQLAHPSKLCEDDVERFLSHLAIDEKVAVKTQA 69 Query: 139 -SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197 ++ + + ++ + ++ + + T+++++ + + +L + Sbjct: 70 LALNAISFLYREYFQMPLSLNMRFQKSLTEKKLPVVLTRDEVR--RFVQHIDPKYKLHIQ 127 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-----------------------------K 228 L SGLR + R +Q + + +++ Sbjct: 128 LLYGSGLRIMECLRLRIQDIDYDYGALRVWQGKGGKNRTVTLAKELHDPLKSQVNITRDY 187 Query: 229 TGTIITVELP-------------------DGFMKLLAMTPIGKETFFINNDKQKMNATQF 269 + + L T + + + +N + Sbjct: 188 YQKDRHMGGYAGVYISDGLRKKYPGAELDFNWHFLFPSTKLSIDADTGEFRRHHVNESAI 247 Query: 270 SIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 K A AG+ K + H +R AT ++GA + G V + YT + Sbjct: 248 QRAVKRAAKDAGIEKSVTCHTLRHSFATHLLESGADIRTVQEQLGHTDVKTTQIYTHVIE 307 Query: 328 R 328 R Sbjct: 308 R 308 >gi|331676587|ref|ZP_08377283.1| integrase for prophage [Escherichia coli H591] gi|320199038|gb|EFW73635.1| putative bacteriophage integrase [Escherichia coli EC4100B] gi|323942719|gb|EGB38884.1| phage integrase [Escherichia coli E482] gi|323953492|gb|EGB49358.1| phage integrase [Escherichia coli H252] gi|331075276|gb|EGI46574.1| integrase for prophage [Escherichia coli H591] Length = 350 Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 43/330 (13%), Positives = 86/330 (26%), Gaps = 30/330 (9%) Query: 14 ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + GK + Y GRR+R A+ T + ++ TL Sbjct: 4 RKLTTGKWLCECYPAGRSGRRVR-KQFATKGEALAFERHTMEETEAKPWLGESVD-RRTL 61 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----- 126 K ++ + K H SL + ++ ++ G+ +T+K + R Sbjct: 62 KDVVELWFK-LHGKSLTAG-QHVYDKLL-LMVDALGNPLATDLTSKMFAHYRDKRLTGEI 118 Query: 127 --------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 +P + + + +F R + L R E W + Sbjct: 119 YFSEKWKKGASPVTINLEQSYLSSVFSELSRLGEWSYPNPLENMRKFTIAEKEMAWLTHE 178 Query: 179 MQQFKSFWSEGSQPRLAFE--FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 + P LA L +G R ++ + + K ++ Sbjct: 179 QIVELLADCKRQDPILALVVKICLSTGARWREAVNLTRSQVTKYRITFVRTKGKKNRSIP 238 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296 + + + F + + + H +R A Sbjct: 239 ISKELYEEIMALDGFNFFTDCYFQ--------FLSVMEKTSIVLPRGQLTHVLRHTFAAH 290 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326 +G L G + Y A Sbjct: 291 FMMSGGNILALQKILGHHDIKMTMRYAHLA 320 >gi|224477023|ref|YP_002634629.1| putative integrase [Staphylococcus carnosus subsp. carnosus TM300] gi|222421630|emb|CAL28444.1| putative integrase [Staphylococcus carnosus subsp. carnosus TM300] Length = 390 Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 52/379 (13%), Positives = 112/379 (29%), Gaps = 54/379 (14%) Query: 18 HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR---KKPTTLKWL 74 Y G + T A + I + T ++ Sbjct: 9 KNNWRYRISLGKNPQTGKYEYISKTGFQRKSDAKHHAEMVERQIRNNEYIAPSAHTFSYI 68 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSS 132 E+ V+S + E GD + IT + V+ + + + Sbjct: 69 ADEFINHYR-KDAKVSSVRAREKAIKHAKVAFGDKAIQSITKHQYQQFVDDISTRFSKNY 127 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK---------RKTEGIRPWTKEDMQQFK 183 + S ++FK+A+ + P ++RPK + KE++ +F Sbjct: 128 VDSIVASTNLVFKYALDMNLLKKLPNEGIKRPKQKVTVEELEHTELKQKFLEKEELFEFL 187 Query: 184 SFWSEGSQPRLAFEF---LLYSGLRCSDSCRAGVQHLQNNIFSI---------------- 224 + P +FE + YSG R + + + ++I Sbjct: 188 NVAKNDHPPLNSFELFTLMAYSGCRAGEILALKWSDVDFDNYTINITKTYYNPNNNKKNY 247 Query: 225 ---------------KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269 ++ + K + F +N+ + + Sbjct: 248 QILTPKTNASIGKLSIDPHVIKLLKDYKVNVQDKWKNELYVDNNFVFTDNNGYPLVIKKL 307 Query: 270 SIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGA 326 S W ++ +K ++K + H R + +AG E+ K ++ Y K Sbjct: 308 SQWIQSIMSKTNIDKNITTHSFRYTHCALLIEAGVHIKEIQERLRHKDINTTMNIYAKIT 367 Query: 327 DRIRLGIKNSRRISSVVDS 345 D + S++ S ++++ Sbjct: 368 DSYK--KDASQKFSQLMEN 384 >gi|294085314|ref|YP_003552074.1| site-specific recombinase, phage integrase family [Candidatus Puniceispirillum marinum IMCC1322] gi|292664889|gb|ADE39990.1| site-specific recombinase, phage integrase family [Candidatus Puniceispirillum marinum IMCC1322] Length = 420 Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 44/327 (13%), Positives = 97/327 (29%), Gaps = 28/327 (8%) Query: 25 FRKGHGR-RIRLPYPHESTFIPAYMSA--LTGSTPKREYINSPRKKPTTLKWLISEYRKS 81 FR R + + + T A A + G K + + K Sbjct: 65 FRHKGRRFSKTIGHDGDMTVAEARAIAAQIIGDVKTGRCHKPITPKERRFEVFAETFFKR 124 Query: 82 AHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140 + + ++ I+ D + +T +++R + P +A + L + Sbjct: 125 YG-HNWKPVTLAGSRRAYEAYIVPFFTGMDVQTVTPENVRRWFAALHDRPGAANRSLALL 183 Query: 141 RVLFK----WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196 V+ + + R + R +++ + + + + + R+A Sbjct: 184 SVMMREAERYGYRDANTNPCKGMRRYRLRKQERFLSDDEYRHLGRMLAAQESVTPLRVAM 243 Query: 197 EFLLY-SGLRCSDSCRAGVQHLQNNI--------------FSIKTQKTGTIITVELPDGF 241 LL +G R S+ + +N + ++ Sbjct: 244 IRLLLLTGCRKSEIRTLKWCYYRNGRNGRKHLFLPDSKTGQKMIYLSDPARAILDKIPRK 303 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADA 300 + T I ++ D F F+ T+AG++ H +R A+++ Sbjct: 304 SAWVFPTTIKRKRGRPRKDAVPFFDIDFWNIFR---TRAGLDDVRLHDLRHSYASLAIRN 360 Query: 301 GATAHELMATYGWKTVDQAETYTKGAD 327 G + L G + YT D Sbjct: 361 GVSLVTLGRLVGHVDPETTLQYTHLTD 387 >gi|262381530|ref|ZP_06074668.1| transposase [Bacteroides sp. 2_1_33B] gi|262296707|gb|EEY84637.1| transposase [Bacteroides sp. 2_1_33B] Length = 403 Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 49/336 (14%), Positives = 110/336 (32%), Gaps = 30/336 (8%) Query: 37 YPHESTFIPAYMSALTG-----STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNS 91 ++T Y + L + R +K TL + S++ + + Sbjct: 70 DSIKATLHRHYQTILERDNYVTAEKVRNVFLGKEEKAKTLLQVFSQHNEQYALKVGKTAT 129 Query: 92 RISFESYF---DQIIRKSGDF-DYRKITTKHI---------RSGVESRKHTPSSAIQFLT 138 + ++ Y +++ D + IT + I E+ T ++A++F+ Sbjct: 130 QKTYTRYELTKNRLAEYIHDKYNVEDITFREINVVFIEGFYLFIRENYPCTHNTAMKFIQ 189 Query: 139 SMRV--LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196 R LF + ++ + + + + + Q Q R F Sbjct: 190 RFRTVVLFAHNLGLITFNPFGAYKLKFEYVERDFLEQAELDRIYQKTFASKRLEQVRDIF 249 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF 256 F Y+GL D C ++++ + ++LL + + + Sbjct: 250 IFSCYTGLSYVDVCELTPENIKLSFDGNLWI--IKKRHKTSVTSNIRLLDIPKSILQKYD 307 Query: 257 INNDKQK----MNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMAT 310 K ++ + + + K AT G+NK + H R AT+S G + Sbjct: 308 GKLPNGKLLPVISNQKMNDYLKEIATVCGINKRITFHVARHSFATLSISYGVPIESVSKM 367 Query: 311 YGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346 G + + Y K D ++ ++ +++ Sbjct: 368 LGHTNIRTTQIYAKIIDTK--LSEDMDIFANKLNNR 401 >gi|55822750|ref|YP_141191.1| integrase/recombinase [Streptococcus thermophilus CNRZ1066] gi|55738735|gb|AAV62376.1| integrase/recombinase, phage associated [Streptococcus thermophilus CNRZ1066] gi|312278176|gb|ADQ62833.1| Integrase/recombinase, phage associated [Streptococcus thermophilus ND03] Length = 388 Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 45/384 (11%), Positives = 111/384 (28%), Gaps = 60/384 (15%) Query: 11 VTKERTRHGKIIYY------FRKGHGRRIRLPYP-HESTFIPAYMSALTGSTPKREYINS 63 + + + + G +Y G+++ + Sbjct: 3 INEIKKKDGSTVYRANIYLGVDVITGKKVTTKVTARTKKELKTKAQQAQFDFKANGSTRY 62 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG 122 T + L + S ++ N++ + + + ++ G+F K+TT I+S Sbjct: 63 KEVAIETYEELAISWWDSYK-NTVKANTKRAQKGLLNNHVLPLFGEFKLDKLTTPLIQST 121 Query: 123 VESRKHTPSSA--------IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 + ++ ++ + + + ++ V + + NP +V P+ + + Sbjct: 122 MNKLANSTNTGEAGAYLHYDKIHALNKRILQYGVVLQVIPTNPANNVVLPRNTQKDKKAK 181 Query: 175 TKEDMQQFKSFW-----------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--- 220 K + + ++FLL +G R +++ + + Sbjct: 182 VKHFNNDELKQFLTYLDSLDNSKYKNYYDITLYKFLLATGCRINEALALSWSDIDLDNSV 241 Query: 221 ---------------------IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259 I K + + + F + Sbjct: 242 VHITKTLNYEMKLNSPKSKSGYRDIDIDKQTVTMMKRYQHKQTQEAWKLGRTETVVFSDF 301 Query: 260 DKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 + N+ +AGV N HG R A++ ++G EL G + Sbjct: 302 IHEYPNSRTLQSRLGTHFKRAGVTNIGFHGFRHTHASLLLNSGIPYKELQHRLGHSKLSM 361 Query: 319 AE-TYTKGADRIRLGIKNSRRISS 341 Y+ L +N+++ S Sbjct: 362 TMDIYSH------LSKENAKKAVS 379 >gi|77413793|ref|ZP_00789973.1| site-specific recombinase, phage integrase family [Streptococcus agalactiae 515] gi|77160155|gb|EAO71286.1| site-specific recombinase, phage integrase family [Streptococcus agalactiae 515] Length = 384 Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 56/366 (15%), Positives = 115/366 (31%), Gaps = 55/366 (15%) Query: 11 VTKERTRHGKIIYYFR-------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63 V K ++ G I Y+ + G + A+ +A+ +++ Sbjct: 3 VHKYQSTKG-ITYFVKVYLGLNDYGKKKYYTKRGFKTRKAAKAHETAVNHQLNSGTFVHI 61 Query: 64 PRKKPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 + T + L + ++ + AV + + I+ G+ I+ + Sbjct: 62 TAQTTYTYQELYQRWYEAYKDTVEATTAVKTADLYR---LHILPVFGEKKISIISPLDCQ 118 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-IRPWTKEDM 179 + + + T + Q + +F++A+ Y+ NP V PK K WT ++ Sbjct: 119 TFITDKAKTFKNMKQIKSYTSKIFEFAINMNYIERNPMSKVIMPKLKKTVSENYWTVNEL 178 Query: 180 QQFKSFWSEGSQPRLAFEFLL--YSGLRCSDSCRAGVQ----------------HLQNNI 221 F + E + F L YSGLR + + + + Sbjct: 179 HHFLTIILENEPYKHYALFRLLAYSGLRKGELYALKWEDFDSENQLLTVSKSLGRIDGHA 238 Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTP--------------------IGKETFFINNDK 261 T+ T ++ ++ L D +L + + Sbjct: 239 IEKGTKNTFSVRSIYLDDETCSILNKWKQETSREKWQLSVQPLSLDKEFMFTYCNRDGEI 298 Query: 262 QKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QA 319 + ++A + K K + K S HG R AT+ + G G + Sbjct: 299 EPLHADYINNILKRIIRKHNLKKISPHGFRHTHATLMIEMGIDPVNTAKRLGHASSQITL 358 Query: 320 ETYTKG 325 +TY+ Sbjct: 359 DTYSHA 364 >gi|320010246|gb|ADW05096.1| integrase family protein [Streptomyces flavogriseus ATCC 33331] Length = 382 Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 55/377 (14%), Positives = 104/377 (27%), Gaps = 41/377 (10%) Query: 1 MTPSLRLPPF---VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPK 57 M P R P + + + + Y + G R R + + + Sbjct: 1 MAPKKRNPNGAGSIWQRKDGRYEARVYVPQPDGTRKRKTVYGST--WEECDTKRQELVLR 58 Query: 58 REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITT 116 + L + + + +++ +E++ +I G ++ Sbjct: 59 DRQGIPTPTRSAKLSEWLPYWLEHYVQSRRKLSTLDKYEAHVRLYLIPMLGTKRLETLSV 118 Query: 117 KHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 +R + T ++A + +R AVR+E + N VE P+ K I PW Sbjct: 119 ADVRRFIARVQAAQTAATAKEAHRVLRTALTAAVREELITRNVASLVEPPRVKQREISPW 178 Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234 + ++ F AF + GLR + + + + + Sbjct: 179 SLKETLSFLEAARRDP-LYAAFMLAICMGLRRGELVGLRWTDVDLDNRVLHVRHQTQRRR 237 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQ-----------------------------KMN 265 L D K + + + + Sbjct: 238 GTLYDDDPKSRRRRVVPMPALCVAPLRWHRLKQRETFADTGVTWSESGYIFATRNGRPVE 297 Query: 266 ATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYT 323 F A AG+ H R AT+ AG +M G + YT Sbjct: 298 PRNVYRSFTRVAAGAGLRVVRLHDARHGCATLLTAAGVAPRVIMEILGHSQISITMDVYT 357 Query: 324 KGA-DRIRLGIKNSRRI 339 D R I + R+ Sbjct: 358 HVVHDTQREAISHMDRL 374 >gi|210619453|ref|ZP_03292039.1| hypothetical protein CLONEX_04273 [Clostridium nexile DSM 1787] gi|210148851|gb|EEA79860.1| hypothetical protein CLONEX_04273 [Clostridium nexile DSM 1787] Length = 288 Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 35/288 (12%), Positives = 79/288 (27%), Gaps = 28/288 (9%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD---FDYRKIT----TKHIRSGVESR 126 + YRK L ++ S+ +Y D +T + +R ++R Sbjct: 4 YFNSYRKMISLRGLTDHTIKSYSTYILAYFDFLTDVIHKSPEDVTWDEMRQFVRWLQDTR 63 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + + ++ +R + + + ++ + + + Sbjct: 64 SLSDRTMNAVISQLRFFTIYV-----LHKPWDATQLPFRKFDNYLPYVPSQQEVKTFIST 118 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--ITVELPDGFMKL 244 + + + SGLR + C Q ++ I L +++ Sbjct: 119 IPDLKQKAMVSLMYSSGLRIGEVCHLKYQDIERRNMRIHISHGKNRSDRYALLSKTALEI 178 Query: 245 LAMTPIGKETFFINNDK------QKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATI 296 L+ + Q ++ S + G + H R T Sbjct: 179 LSQYWFAYDKPVDWLFPKQRDKSQPIDTFYLSRHIHEHERRLGWPERITCHSFRHAFGTH 238 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 + GA + A G K++ Y L + + S D Sbjct: 239 LYENGADLLTIQAYLGHKSLASTSIYVH------LATNSMHKAVSPFD 280 >gi|168485015|ref|ZP_02709953.1| integrase [Streptococcus pneumoniae CDC1873-00] gi|172041868|gb|EDT49914.1| integrase [Streptococcus pneumoniae CDC1873-00] Length = 388 Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 48/386 (12%), Positives = 114/386 (29%), Gaps = 56/386 (14%) Query: 11 VTKERTRHGKIIYY------FRKGHGRRIRLP-YPHESTFIPAYMSALTGSTPKREYINS 63 +T+ + G +Y G++++ + A K Sbjct: 3 ITEYTKKDGTTVYRSSVYLGIDTVTGKKVKTTISGRTKRELKAKALQAQIDFEKGGSTVY 62 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG 122 + T L+ + ++ ++ + +S + ++ G++ K+T I+ Sbjct: 63 KAVEIKTYAELVENWLETY-CHTVKKATLTIIKSRLNNYLLPAFGEYKLDKLTPPVIQKQ 121 Query: 123 VESRKHTPSSAIQ------FLTSM-RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 V + + L S+ + + K+AV + + NP + P+RK + + Sbjct: 122 VNQWAKEYNQLGKGYQEYPQLNSLNKRILKYAVSLQVIPFNPARDIIVPRRKEKEGQKLK 181 Query: 176 KEDMQQ---------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI---FS 223 D + + ++ LL +GLR + + Sbjct: 182 YLDDDNLKKFLTYLEQLPNTYKNFYDTVLYKTLLATGLRIRECLALKWSDIDLQNGTLDV 241 Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIG---------------------KETFFINNDKQ 262 KT +T ++++ + E F N+ + Sbjct: 242 NKTLNCEKEVTSPKTKSSIRVIDLDNKTVLMLRLYKNRQAQVGREIGLTYEKVFSNSFDE 301 Query: 263 KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE- 320 +A + + + + H R A+I +AG E+ G + Sbjct: 302 YRDARALRSRLEKHLKLSDCPRLTFHAFRHTHASILLNAGLPYKEIQTRLGHAKLSMTMD 361 Query: 321 TYTKGA-DRIRLGIK----NSRRISS 341 Y+ + D + ++ S Sbjct: 362 IYSHLSKDNKKNATSFYEKAIEKLKS 387 >gi|332140068|ref|YP_004425806.1| putative integrase [Alteromonas macleodii str. 'Deep ecotype'] gi|332143134|ref|YP_004428872.1| putative integrase [Alteromonas macleodii str. 'Deep ecotype'] gi|327550090|gb|AEA96808.1| putative integrase [Alteromonas macleodii str. 'Deep ecotype'] gi|327553156|gb|AEA99874.1| putative integrase [Alteromonas macleodii str. 'Deep ecotype'] Length = 322 Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 33/308 (10%), Positives = 79/308 (25%), Gaps = 53/308 (17%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 I + A + ++ ++ IR + + H+ + + Sbjct: 3 SQFIKSLYEHMMLKRYAKRTIQTYINWISDYIRFHKFQHPKDLDVLHVEAYLTHLSTKRK 62 Query: 132 SAIQFLT-SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 +A ++ L + + ++ R+ + T+ +++ + Sbjct: 63 NARSTQATALNALVFLYNKYLEQPLPSDMNFVGSGRERKLPVVLTQLEVKALLGR--VPT 120 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------------------- 231 LA L SGLR + R + + ++ Sbjct: 121 HHYLAVALLYGSGLRLMECVRLRTGDIDFDYKCVRIWFGKGGKHRVVTLSESLIPLLKNH 180 Query: 232 --------IITVELPDGFMKLLAMTPIGKETFFINNDKQ--------------------- 262 + +PD + K + Sbjct: 181 ISESEKLLQRDLMVPDFAGAWIPHGLRKKYQQRNKTLEWQYLFPASKLSIDPESKLLRRH 240 Query: 263 KMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320 ++ Q ++ AG+ + + H +R AT +GA + G V + Sbjct: 241 HIDEKQIQRAVSRASSDAGIIKHVTPHTLRHSFATHLLQSGADIRTVQDQLGHADVRTTQ 300 Query: 321 TYTKGADR 328 YT + Sbjct: 301 IYTHILQQ 308 >gi|329961823|ref|ZP_08299837.1| site-specific recombinase, phage integrase family [Bacteroides fluxus YIT 12057] gi|328531263|gb|EGF58107.1| site-specific recombinase, phage integrase family [Bacteroides fluxus YIT 12057] Length = 394 Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 40/303 (13%), Positives = 86/303 (28%), Gaps = 21/303 (6%) Query: 41 STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD 100 + + S + + + T+ I +R+ +L +++ + S Sbjct: 77 KKELELWQQGRRISLELLKDVLGTSENKTSF---IPFFRQEVTNSALKESTKRNHLSTLT 133 Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKHTPS---SAIQFLTSMRVLFK------WAVRQE 151 + D + +T + I S + + + + ++ + Q+ Sbjct: 134 LLQEFKKDVSFSDLTFEFISSFEYFLQSKGYHTNTIAKHMKHLKRHINVAINKDYMEIQK 193 Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCR 211 Y + K K + +++ + AF F Y+G+R SD Sbjct: 194 YAFRKYKIKTIENKHTHLAPEELEKLERLNLIGRYTKYQKTLDAFLFCCYAGMRYSDFIS 253 Query: 212 AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI-----GKETFFINNDKQKMNA 266 ++ + L K I + + Sbjct: 254 LTPDNIVEIHKET--WLIYKSVKTNTEVRLPLYLLFEKKGLVILEKYQDNIQDFFHLRDN 311 Query: 267 TQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + + A AG+ S H R +AT+ G + G K+V + YT Sbjct: 312 SNVNKDLIILARLAGLSKKISFHTARHTNATLLIYNGVNITTVQKLLGHKSVKTTQVYTN 371 Query: 325 GAD 327 D Sbjct: 372 VMD 374 >gi|325474369|gb|EGC77557.1| DNA integrase [Treponema denticola F0402] Length = 426 Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 39/304 (12%), Positives = 84/304 (27%), Gaps = 57/304 (18%) Query: 84 WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT----PSSAIQFLTS 139 + + ++ + + IR++ + + + ++ I + V SS Q L + Sbjct: 121 AKHYSKRTMEAYSYWISRFIRENKNKNLKTLSDTEINAFVSRLAVKEKAAASSQNQALAA 180 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199 + L+K + + ++PK+ + + G RL Sbjct: 181 LLFLYKNILGLTIKTPENIVRAKKPKKLPAIMTREETAKIFSLLPENDYGLLIRLL---- 236 Query: 200 LYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELP------------------- 238 +G+R ++ R +Q + N ++ K LP Sbjct: 237 YGTGMRLMEALRLRIQDIDFGKNEITVHCGKGAKDRKTVLPVSLKFPLQKHLENVRLIHE 296 Query: 239 --------------------------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272 + + + + ++ + Sbjct: 297 ADCKDGFGSVPLPSALAKKYPAAGKAWAWQWVFPQARRWQNKETGEQGRHHIDPSVIQRT 356 Query: 273 FKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 K+G+ K H R AT +A + G V YT +R Sbjct: 357 LHEAVLKSGIPKPIGCHTFRHSFATHLLEASYDIRTIQELLGHSDVKTTMVYTHVLNRGS 416 Query: 331 LGIK 334 LGI+ Sbjct: 417 LGIQ 420 >gi|319787522|ref|YP_004146997.1| integron integrase [Pseudoxanthomonas suwonensis 11-1] gi|317466034|gb|ADV27766.1| integron integrase [Pseudoxanthomonas suwonensis 11-1] Length = 335 Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 43/313 (13%), Positives = 88/313 (28%), Gaps = 58/313 (18%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---- 129 L+ + R ++ + ++ + + +R ++ + + + Sbjct: 22 LLDQVRGRLRLKHYSLRTEQAYLYWIRRYVRAWLPRHPAELDGAAVEAFLTGLATRDNVA 81 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 S+ Q L ++ L++ + + +V R KR ++ + + Sbjct: 82 ASTQNQALAALLFLYR---EVLGIELPWMENVVRAKRPRRLPVVLSRAQVVRLLER--LS 136 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAM 247 + L L SGLR + R V+ + +I+ K G LP + L Sbjct: 137 GREALMAGLLYGSGLRLMECARLRVKDVDLERNELTIRDGKGGKDRMTVLPGALREALLR 196 Query: 248 T----------------------------PIGKETFFINNDKQKMNATQF---------- 269 Sbjct: 197 QLAEVRLLHARDLACGLGRVHLPHALARKYPNAAAEPGWQYVFPATRISVDPRDGVRRRH 256 Query: 270 -------SIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320 + A +AG +K + H +R AT ++GA + G K V + Sbjct: 257 HIDEKVLQSAVRRAAREAGFDKPVTPHTLRHCFATHLLESGADIRTVQELLGHKDVATTQ 316 Query: 321 TYTKGADRIRLGI 333 YT +R LG+ Sbjct: 317 IYTHVLNRGALGV 329 >gi|315179062|gb|ADT85976.1| Site-specific recombinase XerD-like protein [Vibrio furnissii NCTC 11218] Length = 411 Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 56/360 (15%), Positives = 102/360 (28%), Gaps = 42/360 (11%) Query: 7 LPPFVTKERTRHGKIIYYFRKG---HGRRIRLP---------YPHESTFIPAYMSALTGS 54 LP V + G + R G++ + T L G Sbjct: 39 LPTGVRCLVGKSGGKRFLLRYTSPVTGKKASIGLGKHPETDLSTLRKTAKEYRQKILEGV 98 Query: 55 TPKREYINSPRKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113 PK E N K TL E Y A + + + ++ + Sbjct: 99 DPKLERDNQSVDKAMTLARFFDEVYLPLAKQKR---SWKDDAARF--RLAKSIHHISIHD 153 Query: 114 ITTKHIRSGVESRK---------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164 +T I + + P+S + L ++ + + A + A V Sbjct: 154 LTAADIIKVQMEMQNAVTIKGKPYAPASINRVLALLKTINRQAYKLMD-APLIADKVSLL 212 Query: 165 KRKTEGIRPWTKEDMQQFKSF--WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222 K ++ +++F E L +G R + + Sbjct: 213 KEDNVRTGYLSESQLKEFIGHALNHEDKSIGAYLVLLFLTGARDKELRLRLKSDVNWEEK 272 Query: 223 S--IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-FSIWFKAKATK 279 + I K GT + L D + +L P ++ ++K FKA K Sbjct: 273 TLTIPHTKNGTSHVLFLSDYMLDILRSVPHVANNPYLFPGRKKGKPVGQPRHAFKAIKAK 332 Query: 280 AGVN--------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330 G+ + H R ++ A G + H++ + Y+K R R Sbjct: 333 MGLPDIPGDKANLTLHSARHTVGSLLASQGVSLHDIAKQLNHADLSSTRRYSKLTVGRRR 392 >gi|265753910|ref|ZP_06089265.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|263235624|gb|EEZ21148.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 342 Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 36/308 (11%), Positives = 90/308 (29%), Gaps = 43/308 (13%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFD--------YRKITTKH 118 L + Y S + +++ +++ + G + + Sbjct: 7 LHDWLEHYVPSIKA--CSPHTKRNYKISVKLYVEFLRVIKGTTPETLSAECFCMEYIMEW 64 Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP---WT 175 I E+R +P++ L+++RV K+ ++ ++ L E + R + Sbjct: 65 IIWLKENRGCSPATCNVRLSALRVFLKYLSFRDISYMSVFLQAENVPNEKNSKRKVIGLS 124 Query: 176 KEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 K+ + S ++GS + L + +R ++ + ++ + G Sbjct: 125 KQAVDVLLSMPNQGSTIGFRDYTLMLLLYSTAVRINELLTLKISNIVIDCVKPHIIVIGK 184 Query: 232 IITVELP-------DGFMKLLAMTPIGK-------ETFFINNDKQKMNATQFSIWFKAKA 277 + L + M+A + K A Sbjct: 185 GRKKRPIPLLAKPAQCLKRYLIKYHPKQNDANALLFCSKSKGIYVPMSAENVNKMLKKYA 244 Query: 278 TKAG-------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRI 329 T A ++ AH R A+ + G ++ G +++ Y + Sbjct: 245 TMAHERCQDVPMDLHAHQFRHAKASHWLENGMNIAQISYLLGHESIQTTMVYLDITTKQE 304 Query: 330 RLGIKNSR 337 ++ Sbjct: 305 EKALETLE 312 >gi|93569004|gb|ABF13469.1| DNA integrase [Arcanobacterium pyogenes] Length = 360 Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 48/343 (13%), Positives = 100/343 (29%), Gaps = 40/343 (11%) Query: 14 ERTRHGKII--YYFRKGHG-RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 R+ +G ++R G G +R ++ + AL N Sbjct: 6 YRSENGTFYSQCFYRDGRGAKRHKVKRGFATEL-----EALMWEKDFLAVHNGTMD--ML 58 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR--- 126 + Y + ++ ++ E +II G +I + Sbjct: 59 FADFVDVYATEIRPR-IREHTWLTKEYMIKDKIIPFFGKMRMSEIKPIDVVRWQNQLIDH 117 Query: 127 ---KHTPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLS-VERPKRKTEGIRPWTKEDM 179 P SA T + +F A R + NPC + +K + WTK++ Sbjct: 118 KDANGKPYSATYLRTINNQLNAIFNHAERYYDLTGNPCRKVTKMGSKKGGEMNFWTKQEY 177 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-----------------NIF 222 +F + AFE L ++G+RC + + Sbjct: 178 LRFSEAIMDKPLSFYAFEVLYWTGIRCGELLALTPSDFIFETSELSITKSYQRLKGIDTI 237 Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 + ++ ++ ++ + + + ++GV Sbjct: 238 TDPKTPNSVRRIAMPKFLAEEMKEYLEDFRDDLGPHDRIFDVTKYYLTHEMERGCKESGV 297 Query: 283 NK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + H +R ++ D G TA + G +++D Y Sbjct: 298 KRIRIHDLRHSHISLLIDMGFTALAIADRVGHESIDITYRYAH 340 >gi|319891831|ref|YP_004148706.1| Integrase [Staphylococcus pseudintermedius HKU10-03] gi|317161527|gb|ADV05070.1| Integrase [Staphylococcus pseudintermedius HKU10-03] Length = 349 Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 52/347 (14%), Positives = 103/347 (29%), Gaps = 36/347 (10%) Query: 11 VTKERTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 V K+ + K + R G R T A + T E + Sbjct: 3 VYKD-DKSDKWYFTVRYKDIYGNNKRKLKRGFKTKREAKSAEAEFLTEVNEGYSDSNTYE 61 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK 127 T L +R E+ + I K G KIT + + + Sbjct: 62 YTF-------YHYLDNSDLRPKTRKRKENEYKLHIKPKFGHIKMNKITQQQCQEFRKYLM 114 Query: 128 ---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 ++ +SA + +V+ +A + + ++P +S++ R + + + + Sbjct: 115 DNINSFNSARTIWSGFKVVINYAKKYFGLRVDPTISIKPIPRTKPKP-NFMMREEFEDRI 173 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGV-------QHLQNNIFSIKTQKTGTIITVEL 237 E R F + Y+GLR ++ + + N + ++ Sbjct: 174 KEVEEQDYRELFTLMFYTGLRVGEAMALVWTDYNKYKKEISINKTMDISNRSIYPRPKTD 233 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF-------------KAKATKAGVNK 284 + L + +KQ +F K KA N Sbjct: 234 SSEDIVPLPKFINEMLSERYQREKQMNKYFDEQNYFIFGGLAPKHYSHVHKKFNKAFPNY 293 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330 S H +R A+ A+ G L + + + TY+ + + Sbjct: 294 SIHALRHSYASYLANNGVDIFVLQSLMRHAQITETMGTYSHLYTQKK 340 >gi|308271884|emb|CBX28492.1| hypothetical protein N47_G38160 [uncultured Desulfobacterium sp.] Length = 311 Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 47/310 (15%), Positives = 109/310 (35%), Gaps = 26/310 (8%) Query: 27 KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS 86 R R T A+ ++ + RK + + Sbjct: 9 WHDKIRHRQGGFMTRT------QAIKAEKEAKKALKINRK----FSEICEKRLMDLKVR- 57 Query: 87 LAVNSRISF---ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL 143 + + E+ +++ G + I + + + S+K +P+ A + L ++ L Sbjct: 58 ---RTFRYYKENENLIKGLVKIWGGKNV--INREDVEVYINSKK-SPTQANKELKMIKRL 111 Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203 F+ AV ++++ NP +++ + +ED+ +F + R F ++Y+ Sbjct: 112 FQHAVERDWLETNPAKNIKLLPVSKKRKYIPPQEDIIKFMVS---AGKDRFYFLTIVYTL 168 Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT--PIGKETFFINNDK 261 R + + + ++ +KT+K E ++L + K+ ++ Sbjct: 169 ARMREINYLKWEDVYSDYLILKTRKARNSDLTERRIPINEILKYILEQLPKKGEYVFCQN 228 Query: 262 QKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320 +AG+ + S H +R + A+ A+AGA + A G + Sbjct: 229 NGKPYDCRKRLMAGICKRAGIKRFSFHSLRHYGASKLAEAGAPLTAIQAILGHSRATTTD 288 Query: 321 TYTKGADRIR 330 TY + + Sbjct: 289 TYLQSLGMKK 298 >gi|228948202|ref|ZP_04110486.1| Integrase/recombinase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228811560|gb|EEM57897.1| Integrase/recombinase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 322 Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 32/300 (10%), Positives = 80/300 (26%), Gaps = 24/300 (8%) Query: 58 REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117 + + K T+K +S + L + +E + + +G +++T Sbjct: 19 DRKLERKQVKGLTIKKALSTVIRQMRATGLRDRTISDYELHISHFMSVTGAEFLQELTVD 78 Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 HI + S + + + L ++ ++ IN S++ +E Sbjct: 79 HIYLWLSSMNVSNQTKLTRLKCLKAFLGRCFDNGWIEINFWKSIKIKVDSPVKEGATDRE 138 Query: 178 DM---QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ----KTG 230 + + + +G+R + +H+ ++ K Sbjct: 139 INLLLSILDLTRFIELRDAASVLLMYQTGIRVGTLSQLEHKHVNLENKVLRIDGGIIKNH 198 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKM---------------NATQFSIWFKA 275 I + D ++L + + Sbjct: 199 ESIHLPFDDVLARVLGALMKQNDIIRKECRVNNNYLFITKNGGRIATSPTNNNITKRLSK 258 Query: 276 KATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334 + G+ + H +R+ A GA + G + Y D+ + Sbjct: 259 HSRDYGLKNINPHALRRGFAKNLLKKGANIALISKALGHSDLAVTTRYLH-LDKEEVAES 317 >gi|148272560|ref|YP_001222121.1| integrase/recombinase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830490|emb|CAN01425.1| integrase/recombinase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 298 Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 33/285 (11%), Positives = 84/285 (29%), Gaps = 32/285 (11%) Query: 83 HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT------PSSAIQF 136 A ++ ++ + + +G + + P++ + Sbjct: 13 RERGSAAHTVRAYSADLRDLAAHAGRQGVTTSAALDLEVLRDWLWRGSQARLAPATLARR 72 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--------WSE 188 ++R W +R V +P + ++ P+ + R +E M + Sbjct: 73 SAAVRGFGAWLLRTGRVEADPAVRLKAPRAGSHLPRVLAREQMSALLARLAARAAEDDPA 132 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAM 247 + E L S LR S+ + + + +++ V + L Sbjct: 133 ALRDLAVIELLYASALRVSELTGLELGDVDASRLTVRVVGKGDRERVVPFGVPAAEALDA 192 Query: 248 TPIGKETFFINNDK----------QKMNATQFSIWFKAKATKAGVNKS----AHGVRKFS 293 ++ ++ + + A + S H +R + Sbjct: 193 YVARGRPGLVSPRTGTALFLGARGGRLGSRAVYGLVASLL--ADIPGSGPQGPHALRHTA 250 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337 AT D GA + G ++ + YT + +R++ + + Sbjct: 251 ATHLLDGGADLRTVQEMLGHASLGTTQIYTHVSIERLQRSYEGAH 295 >gi|13095681|ref|NP_076573.1| integrase [Lactococcus phage bIL285] gi|15672990|ref|NP_267164.1| integrase [Lactococcus lactis subsp. lactis Il1403] gi|12723956|gb|AAK05106.1|AE006335_2 prophage pi2 protein 01, integrase [Lactococcus lactis subsp. lactis Il1403] gi|12830870|gb|AAK08226.1|AF323668_1 integrase [Lactococcus phage bIL285] Length = 374 Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 42/353 (11%), Positives = 99/353 (28%), Gaps = 44/353 (12%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTP-KREYINSPRKKPTTLK 72 + R Y + RL ST A A+ + K+ +I P K+ + Sbjct: 4 YQKRGKTWQYSISRTKQGLPRLTKGGFSTKSDAQAEAMDIESKLKKGFIVDPIKQEIS-- 61 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132 ++ + ++ + +E + + +IT + + T + Sbjct: 62 EYFKDWMELYKKNAIDEMTYKGYEQTLKYLKTYMPNVLISEITASSYQRALNKFAETHAK 121 Query: 133 AIQ--FLTSMRVLFKWAVRQEYVAINPC-----LSVERPKRKTEGIRPWTKEDMQQFKSF 185 A F T +R + + + + + K + + + + Sbjct: 122 ASTKGFHTRVRASIQPLIEEGRLQKDFTTRAVVKGNGNDKAEQDKFVNFDEYKQLVDYFR 181 Query: 186 WSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------- 234 + +G+R S++ + N +IK ++T Sbjct: 182 NRLNPNYSSPTMLFIISITGMRASEAFGLVWDDIDFNNNTIKCRRTWNYRNKVGGFKKPK 241 Query: 235 -------VELPDGFMKLLAMTPIG-------------KETFFINNDKQKMNATQFSIWFK 274 + + D M+LL + + ++ + + Sbjct: 242 TDAGIRDIVIDDESMQLLKDFREQQKTLFESLGIKPIHDFVCYHPYRKIITLSALQNTLD 301 Query: 275 AKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 K + + HG+R A++ G + G +V +TY Sbjct: 302 HALKKLNISTPLTVHGLRHTHASVLLYHGVDIMTVSKRLGHASVAITQQTYIH 354 >gi|13488301|ref|NP_085852.1| integrase/recombinase [Mesorhizobium loti MAFF303099] gi|14028101|dbj|BAB54693.1| integrase/recombinase [Mesorhizobium loti MAFF303099] Length = 336 Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 42/295 (14%), Positives = 88/295 (29%), Gaps = 37/295 (12%) Query: 65 RKKPTTLKWLISEYRKSA--HWGSLAVNSRISFESYFDQIIR----KSGDFD----YRKI 114 RK + L+ Y + +++ + ++ F ++R G + Sbjct: 4 RKTHPSFAVLLQRYFTEHLTNQRAVSPRTIAAYRDTFRLLLRFAERHIGKAPANVELLDL 63 Query: 115 TTKHIRSGVE----SRKHTPSSAIQFLTSMRVLFKWAVRQEYV---AINPCLSVERPKRK 167 ++ I + ++ R + P S L+++R +A + I L++ + + Sbjct: 64 DSELILAFLDHLERERDNGPRSRNVRLSAIRSFLHYASHHDVTALPTIQRALAIPQKRYD 123 Query: 168 TEGIRPWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNI 221 + ++E+MQ G + + F + +G R S+ V + + Sbjct: 124 KPLLEFLSREEMQAILDAPNQLEWTGRRDQAFFTTMYNTGGRVSELIGLRVSDVVLDGSA 183 Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK------MNATQFSIWFKA 275 K TV L LL + M + + Sbjct: 184 CIHINGKGRKQRTVPLWRSSANLLRAWRREAGDVAGSAAFFPNRDGVAMTRSNVTQRLAL 243 Query: 276 KATKAGVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 KA K S H R +A +G + G ++ Y Sbjct: 244 YVKKAAEKKPQLLAKTISPHTFRHSTAMHLLQSGVDISVIALWLGHESPTTTHNY 298 >gi|114328726|ref|YP_745883.1| site-specific tyrosine recombinase XerC [Granulibacter bethesdensis CGDNIH1] gi|114316900|gb|ABI62960.1| integrase/recombinase (XerC/CodV family) [Granulibacter bethesdensis CGDNIH1] Length = 300 Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 38/290 (13%), Positives = 77/290 (26%), Gaps = 34/290 (11%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-------------GDFDYRKITTKH 118 + I + + A + ++ + G Sbjct: 8 RDWID-WLRDE--KRAAPLTCRAYGDDVAAFLGFLATHQGAEPDMAMLGRLGLSDFRAW- 63 Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + ++ + L S+R F + ++ + + + PK K R + Sbjct: 64 -LASEAVKGAGNATRARHLASIRSFFHFLRQRHALENSALPLLRTPKAKPPLPRALDQTQ 122 Query: 179 MQQFKSFWSEGS-------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 E S + F L GLR ++ V + T K G Sbjct: 123 ALAAARDIGEASENPFTQARDTALFALLYGCGLRLGEALGLMVGD-SQHDTLRITGKGGR 181 Query: 232 IITVELPDGFMKLLAMTPIGKETF------FINNDKQKMNATQFSIWFKAKATKAGVN-- 283 V + L+ F+ ++N + T + Sbjct: 182 QRMVPVIPSVRTSLSDWLRFHPVPEASAPLFVGVRGARLNPGVAQRTLRQFRTLYNLPEH 241 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 + H +R AT AGA + G ++ + YT+ L + Sbjct: 242 ATPHALRHSFATHLLAAGADLRAIQDLLGHASLSTTQRYTQVDQAQLLAV 291 >gi|295087379|emb|CBK68902.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A] Length = 351 Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 33/320 (10%), Positives = 93/320 (29%), Gaps = 43/320 (13%) Query: 61 INSPRKKPTTLKWLISEYRKS--AHWGSLAVNSRISFESYFDQIIRKS----GDFD---- 110 + + + ++ + + + +++ +++ + G Sbjct: 2 KKKINPQAMQIADYLHDWLEHYVPSIKACSPHTKRNYKISVKLYVEFLRVIKGTTPETLS 61 Query: 111 ----YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 + + I E+R +P++ L+++RV K+ ++ ++ L E Sbjct: 62 AECFCMEYIMEWIIWLKENRGCSPATCNVRLSALRVFLKYLSFRDISYMSVFLQAENVPN 121 Query: 167 KTEGIRP---WTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219 + R +K+ + S ++GS + L + +R ++ + ++ Sbjct: 122 EKNSKRKVIGLSKQAVDVLLSMPNQGSTIGFRDYTLMLLLYSTAVRINELLTLKISNIVI 181 Query: 220 NIFSIKTQKTGTIITVELP-------DGFMKLLAMTPIGK-------ETFFINNDKQKMN 265 + G + L + M+ Sbjct: 182 DCVKPHIIVIGKGRKKRPIPLLAKPAQCLKRYLIKYHPKQNDANALLFCSKSKGIYVPMS 241 Query: 266 ATQFSIWFKAKATKAG-------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 A + K AT A ++ AH R A+ + G ++ G +++ Sbjct: 242 AENVNKMLKKYATMAHERCQDVPMDLHAHQFRHAKASHWLENGMNIAQISYLLGHESIQT 301 Query: 319 AETYTK-GADRIRLGIKNSR 337 Y + ++ Sbjct: 302 TMVYLDITTKQEEKALETLE 321 >gi|281491502|ref|YP_003353482.1| phage integrase [Lactococcus lactis subsp. lactis KF147] gi|281375220|gb|ADA64733.1| Phage integrase [Lactococcus lactis subsp. lactis KF147] Length = 374 Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 41/353 (11%), Positives = 98/353 (27%), Gaps = 44/353 (12%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTP-KREYINSPRKKPTTLK 72 + R Y + RL ST A A+ + K+ +I P K+ + Sbjct: 4 YQKRGKTWQYSISRTKQGLPRLTKGGFSTKSDAQAEAMDIESKLKKGFIVDPIKQEIS-- 61 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132 ++ + ++ + +E + + +IT + + T + Sbjct: 62 EYFKDWMELYKKNAIDEMTYKGYEQTLKYLKTYMPNVLISEITASSYQRVLNKFAETHAK 121 Query: 133 AIQ--FLTSMRVLFKWAVRQEYVAINPC-----LSVERPKRKTEGIRPWTKEDMQQFKSF 185 A F T +R + + + + + K + + + + + Sbjct: 122 ASTKGFHTRVRASIQPLIEEGRLQKDFTTRAVVKGNGNDKAEQDKFVNFDEYKLLVDYFR 181 Query: 186 WSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------- 234 + +G+R S++ + + IK +T Sbjct: 182 NRLNPNYSSPTMLFIISITGMRASEAFGLVWDDINFDNNVIKCHRTWNYRNKVGGFKKTK 241 Query: 235 -------VELPDGFMKLLAMTPIG-------------KETFFINNDKQKMNATQFSIWFK 274 + + D M+LL + + ++ + + Sbjct: 242 TDAGIRDIIIDDESMQLLKDFREQQKKLFESLGIKPIHDFVCYHPYRKIITLSALQNTLD 301 Query: 275 AKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 K + + HG+R A++ G + G +V +TY Sbjct: 302 HALKKLKISTPLTVHGLRHTHASVLLYHGVDIMTVSKRLGHASVAITQQTYIH 354 >gi|268610904|ref|ZP_06144631.1| integrase family protein [Ruminococcus flavefaciens FD-1] Length = 391 Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 48/370 (12%), Positives = 108/370 (29%), Gaps = 54/370 (14%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 + + G+ A + + TL Sbjct: 12 YKDKQGRWRAVISIPSVDGPPKRRYIYGQTRKAVADKMHIILNQIHTNTYIEPCKVTLYE 71 Query: 74 LISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH---- 128 + + + + + +++++Y I G + + T ++S + Sbjct: 72 WLCTWLDQYCKIEVKLTTYVNYDTYVHRHIKNTIGGYKLCDLNTSIMQSFFNEKAENGKL 131 Query: 129 ------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 +P + M AV + + NP V PKR+ +R T ++ ++ Sbjct: 132 HSSGGLSPKTIKNMHDMMHRALDKAVHLDMIIKNPTDFVTLPKRRKSEMRFLTIDEQKK- 190 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT---------------- 226 +G + + LY+G+R + +++ Sbjct: 191 LQEALKGDRLEMPVLLALYTGMRQGEIFGLKWKYVHIESTDRAWLRVVQAVNRFSNRTDD 250 Query: 227 ------------QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK----------- 263 + +I T+ L + L +E F +N Sbjct: 251 GKRKTFLSLSEPKTPHSIRTIPLMPYIAERLTEYKCEQEQHFKDNGLPMSEMVFTTKNGN 310 Query: 264 -MNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAE 320 ++ F FK + G++ + HG+R AT + ++G L G +V + Sbjct: 311 LVDPRNFQRDFKLLLKRNGLHEINVHGLRHTFATRALESGMNVKTLSKILGHSSVAFTLD 370 Query: 321 TYTKGADRIR 330 TY + ++ Sbjct: 371 TYAHVTEDLK 380 >gi|212691118|ref|ZP_03299246.1| hypothetical protein BACDOR_00608 [Bacteroides dorei DSM 17855] gi|212666350|gb|EEB26922.1| hypothetical protein BACDOR_00608 [Bacteroides dorei DSM 17855] Length = 409 Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 40/295 (13%), Positives = 93/295 (31%), Gaps = 28/295 (9%) Query: 69 TTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKSG------DFDYRKITTKHI 119 TL ++ R A + +++ + D + ++T + I Sbjct: 108 MTLMKMLDAVRDEVKSRIGIDRAKGTYPAYDYTCRTMREFIEAKFKTKDLAFGQLTEQFI 167 Query: 120 RSGV----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 + + H +A +L ++ + A ++ + PK+ + + + Sbjct: 168 HDYENFILDEKGHAVDTARHYLAIVKKSCRKAYKEGHSERFMFQHYVLPKQTVKTPKALS 227 Query: 176 KEDMQQFKSFWSEGSQ-----PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230 +E ++ + + R F F Y+G+ SD+ ++L + K Sbjct: 228 RESFEKIRDVEIAPHRTTHRLARDLFLFACYTGVAYSDAVTITKENLHTDEDGKLWLKY- 286 Query: 231 TIITVELPDGFMKLLAMT---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA- 286 +KLL N ++ KA A AG+ ++ Sbjct: 287 -RRKKNELRASVKLLPEAVDLIEKYHDDERNTLFPMIHYPSLRNHMKALAVLAGIKENLC 345 Query: 287 -HGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 H R A++ +AG + G + + Y + + ++ R+ Sbjct: 346 YHVGRHSFASLVTLEAGVPIETISKMLGHSNIQTTQVYARVTPKK--LFEDMDRL 398 >gi|167036524|ref|YP_001664102.1| phage integrase family protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320114956|ref|YP_004185115.1| integrase family protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166855358|gb|ABY93766.1| phage integrase family protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319928047|gb|ADV78732.1| integrase family protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 403 Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 57/392 (14%), Positives = 127/392 (32%), Gaps = 70/392 (17%) Query: 18 HGKII----YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP-TTLK 72 GK Y G+G+R E L + + P + T+K Sbjct: 13 KGKKYKISFYIGTDGNGKRKYYIETIECKNKAEAQKYLAKKIVEYDTGTLPIDETNITVK 72 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR---KH 128 + ++ ++ SLA+ + +E I G++ K+T I++ + Sbjct: 73 DYLKKWLETKK-SSLALKTYNDYEQKIRLYINPAIGNYKLLKLTPLIIQNMYNNMLEQGL 131 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + + T + K A++ + + NPC PK+ + ++ T E ++F Sbjct: 132 SARTIRYTHTVLNEALKQAIKWQMLRYNPCDGTTLPKQAKKEMKVLTPEQAKKFLEACVY 191 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQ----------------HLQNNIFSIKTQKTGTI 232 + + FE LL SG+R S++ + ++NN + + + Sbjct: 192 N-RWGILFELLLISGMRPSEALGLKWEDIDWKNNRIAVQRTLTRVKNNWQLKEPKTPQSR 250 Query: 233 ITVELPDGFM------------------KLLAMTPIGKETFFINNDKQKMNATQF----- 269 T+ LP M + + + +++ + + Sbjct: 251 RTIPLPREVMNDLKEHRKQQSKEKLKAKEYINYDKDKNKFKPEEWEEKLKDPKVYVDYGL 310 Query: 270 ----------------SIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYG 312 +FK AG+ + +R AT+ AG + G Sbjct: 311 VFATETGRPLDLANINYQYFKPLLKNAGLPNIRLYDLRHTCATLLLLAGENPKVVSERLG 370 Query: 313 WKTVD-QAETYTKGADRIRLGIKNSRRISSVV 343 + +TY+ + + ++++ ++ Sbjct: 371 HANITLTLDTYSHVLPT--MQEEATQKLKQML 400 >gi|323694873|ref|ZP_08109025.1| phage integrase family Site-specific recombinase [Clostridium symbiosum WAL-14673] gi|323501067|gb|EGB16977.1| phage integrase family Site-specific recombinase [Clostridium symbiosum WAL-14673] Length = 280 Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 36/259 (13%), Positives = 83/259 (32%), Gaps = 18/259 (6%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPS 131 L EY + + N+ + + + D ++T + + E + + Sbjct: 13 LFGEYLEQDE---KSKNTIEKYRRDLRKFVEYI---DGEEVTKELVIGFKEYLVEHYAVN 66 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 S + S+ ++A QE+ ++ + + TK++ + + Sbjct: 67 SVNSIIASLNRFMQFAGWQEFRVK---QLKKQRQVYCPEEKELTKQEYFELIRTAKREGK 123 Query: 192 PR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP--DGFMKLLAM 247 + L + + +G+R S+ VQ ++N + + + + + M + Sbjct: 124 EKIGLIIQTIGSTGIRISELPSITVQAVKNGVAEVDCKGKNRQVLLPRKLLVKLMYYIRK 183 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATA 304 I FI ++ + K AGVN+ H +R A Sbjct: 184 EHIQCGPIFITKQGNPLDRSNIWKEMKKICRLAGVNEKKVFPHNLRHLFAYSFYQMEKDI 243 Query: 305 HELMATYGWKTVDQAETYT 323 +L G ++ Y Sbjct: 244 AKLADLLGHSNINTTRIYI 262 >gi|320321405|gb|EFW77525.1| phage integrase family site specific recombinase [Pseudomonas syringae pv. glycinea str. B076] gi|320331161|gb|EFW87128.1| phage integrase family site specific recombinase [Pseudomonas syringae pv. glycinea str. race 4] gi|330882731|gb|EGH16880.1| phage integrase family site specific recombinase [Pseudomonas syringae pv. glycinea str. race 4] Length = 320 Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 39/270 (14%), Positives = 84/270 (31%), Gaps = 31/270 (11%) Query: 90 NSRISFESYFDQIIRKSG---DFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVL 143 +R ++++ G D+R++T H+ + + + ++ + L ++ L Sbjct: 40 RTRRAYQNDLTDFSAFIGLASADDFRQVTRSHVLAWRANLEQRGLAGATIRRKLAALASL 99 Query: 144 FKWAVRQEYV---AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAF 196 F + + + + + + E G + R Sbjct: 100 FDHLLESNAIAGGNPVHGVKRPKIESNEGKTPALGDHQAKALLEAPDESTLKGLRDRAML 159 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---------------IITVELPDGF 241 LLY GLR ++ + V +Q + G I L Sbjct: 160 AVLLYHGLRREEAAQLQVSDIQERRGIQHLKIHGKGGKVRYLPLHPVAAGRIHWYLERSG 219 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISA 298 L + + ++A +A KAG+ HG+R +AT + Sbjct: 220 HHLDDKKVPLFISLRGKSTGASISANGIYTVVEAYTKKAGIEVAGLGVHGLRATAATNAL 279 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADR 328 + A ++ A G + + Y + +R Sbjct: 280 EHEADIAKVQAWLGHANISTTKIYDRRENR 309 >gi|256021081|ref|ZP_05434946.1| bacteriophage integrase [Shigella sp. D9] gi|332104658|gb|EGJ08004.1| site-specific recombinase [Shigella sp. D9] Length = 343 Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 42/330 (12%), Positives = 93/330 (28%), Gaps = 30/330 (9%) Query: 14 ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + GK + Y GRR+R A+ T + ++ TL Sbjct: 4 RKLTTGKWLCECYPAGRSGRRVR-KQFSTKGEALAFERHTMEETEAKPWLGESMD-RRTL 61 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----- 126 K ++ + K H SL + ++ ++ G+ +T+K + R Sbjct: 62 KDVVELWFK-LHGKSLTAG-QHVYDKLL-LMVDALGNPLATDLTSKMFAHYRDKRLTGEI 118 Query: 127 --------KHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKE 177 +P + + + +F R E+ NP ++ + + + T E Sbjct: 119 YFSEKWKKGASPVTINLEQSYLSSVFSELSRLGEWSYPNPLENMRKFTIAEKEMAWLTHE 178 Query: 178 DMQQFKSFW-SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 + + + + L + L +G R ++ + + K ++ Sbjct: 179 QIVELLADCKCQNPILALVVKICLSTGARWREAVNLTRSQVTKYRITFVRTKGKKNRSIP 238 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296 + + + F + + + H +R A Sbjct: 239 ISKELYEEIMALDGFNFFTDCYFQ--------FLSVMEKTSIVLPRGQLTHVLRHTFAAH 290 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326 +G L G + Y A Sbjct: 291 FMMSGGNILALQKILGHHDIKMTMRYAHLA 320 >gi|91204063|emb|CAJ71716.1| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis] Length = 433 Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 45/313 (14%), Positives = 92/313 (29%), Gaps = 63/313 (20%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVES 125 +I + R+ + ++ ++ + + D + + +R+ + Sbjct: 105 FNAVIDKLRELIRLKHYSYSTEQTYIEWAKKFHTFILDSKGIKFEIDTLDSNDVRNYLSY 164 Query: 126 R----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + + S+ Q +++ LFK + E + + +R T+ T ED+Q Sbjct: 165 LALKQRVSSSTQNQAFSALLFLFKNVLNVELGDLGDTVRAKR---GTKLPVVLTVEDVQ- 220 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPD 239 + F + L + + SGLR + R V+ + N+ +++ K + LP+ Sbjct: 221 -ELFKQVKGRNLLIIQLIYGSGLRLMELARLRVKDIDFDSNMIFVRSGKGDKDRSTMLPE 279 Query: 240 GFM----------------------------KLLAMTPIGKETFFINNDKQKM------- 264 L + Sbjct: 280 FVKPELKLHLDKVKVLHNEDVEKGYGEVYLPNALDRKYPNAPKDWGWQYVFPSERLSVDL 339 Query: 265 ----------NATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYG 312 + K KAG+ N S H +R AT G E+ G Sbjct: 340 RSGKIRRHHLSDKAIQNMVKGAVKKAGIVKNASVHTLRHSFATHLLMNGVNIREVQDLLG 399 Query: 313 WKTVDQAETYTKG 325 K ++ YT Sbjct: 400 HKNLETTMIYTHV 412 >gi|56807895|ref|ZP_00365725.1| COG0582: Integrase [Streptococcus pyogenes M49 591] gi|209558929|ref|YP_002285401.1| Integrase [Streptococcus phage NZ131.1] gi|209540130|gb|ACI60706.1| Integrase [Streptococcus phage NZ131.1] Length = 381 Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 44/375 (11%), Positives = 107/375 (28%), Gaps = 48/375 (12%) Query: 11 VTKERTRHGKIIYYF-------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63 + + + ++G I+Y + + + Y + Sbjct: 3 IIEYKKKNGTIVYRANIYLGIDQVTGKKAKTSVTGRTRKEVKQKAKHAQDEFISNGYTVT 62 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNS-RISFESYFDQIIRKSGDFDYRKITTKHIRSG 122 + L + +S + + + ++ +I G K+T +I+ Sbjct: 63 KVVPIKNYQELAELWLESYQLT-VKPQTFIATKRMLYNHLIPIFGTMKVDKLTVSYIQRF 121 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT------- 175 + + + R + ++ V + + NP V PK + + Sbjct: 122 INDLLNQLVHYGVVHSINRRVLQYGVSLQLLPFNPARDVMLPKVPKKENKAIKFIAPEDL 181 Query: 176 ---KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 M++ + + + LL +G R + + +I K + Sbjct: 182 KALMAYMEKLANKKFSYFFDYVLYSVLLATGCRFGEVVALEWSDIDLENGTISITKNYSR 241 Query: 233 ITVELPDGFMKL-------------LAMTPIGKETFFINNDKQKMNATQFSIWFK----- 274 + + K L ++ +++A FS K Sbjct: 242 LLKLIGTPKSKAGVRVISIDKKTINLLRLYKNRQRQLFIETGARVSAVVFSTPLKEYQNM 301 Query: 275 --------AKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324 + T+ G+ + + H R A++ +AG + EL G T+ Y Sbjct: 302 ATRQESLDRRITEVGIPRFTFHAFRHTHASLLLNAGISYKELQYRLGHATLAMTMDIYGH 361 Query: 325 -GADRIRLGIKNSRR 338 D+ + + + Sbjct: 362 LSMDKEKEAVSYFEK 376 >gi|12667367|gb|AAK01408.1|AF324211_1 site-specific tyrosine recombinase IntIA [Shewanella putrefaciens] Length = 317 Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 31/297 (10%), Positives = 65/297 (21%), Gaps = 50/297 (16%) Query: 80 KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 + ++ + S+ + I + T+ + + + + AI Sbjct: 13 EEMRMRGYSIRTEKSYLYWIKAFINFHHKRHPETMGTEEVAQFLTFLANQRNVAINTQKI 72 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199 + ++ L ++ + ++ + RL E L Sbjct: 73 ALNALAYLYQKHLHHELGNLGFCYATKQRYLPTVLSPSEIS--LILNELDGRDRLIIERL 130 Query: 200 LYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFM--------------- 242 SGLR S+ R +Q + +++ K L Sbjct: 131 YGSGLRVSECLRLRIQDIDIEQASLTVRDGKGHKDRQTILSHKCAIKLAAYINKAMEIQH 190 Query: 243 ------------KLLAMTPIGKETFFINNDKQKMNATQF-----------------SIWF 273 L T Sbjct: 191 SDNQQGIGHALPNALERKYPNAFKQHGWMFIFPSTTTSINPYTGTLCRHHLHQSVIRKVL 250 Query: 274 KAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 + K + H R AT +G+ + G V + YT + Sbjct: 251 GNAVRNIKITKRVTCHTFRHSFATHLLQSGSDIRSVQELLGHNDVSTTQIYTHVLGQ 307 >gi|304322147|ref|YP_003855790.1| integrase/recombinase XerC [Parvularcula bermudensis HTCC2503] gi|303301049|gb|ADM10648.1| integrase/recombinase XerC, putative [Parvularcula bermudensis HTCC2503] Length = 315 Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 39/293 (13%), Positives = 86/293 (29%), Gaps = 29/293 (9%) Query: 74 LISEYRKSAHWGSL-AVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGVESRK 127 L + + + + + + ++ D+ + G+ D I Sbjct: 15 LTAAFLRHLETQTRASPYTIRNYRQTIDRFSDFARRHRGGEVDLVDIARWRTADFRAFLA 74 Query: 128 HT------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW-----TK 176 P + L++++ LF++ R+ P ++ PK RP Sbjct: 75 DRRAEGIAPPTLRLDLSALKQLFRFIDRRTGSETTPLYALRTPKAPRRLPRPIGQAPALA 134 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 + + R F L +GLR S++ + L S++ G + Sbjct: 135 LAEAAEHTQDWTVHRDRALFALLYGAGLRLSEALALDRRDLPPRGVSLRVLGKGAKMRDV 194 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAGV--NK 284 ++ T + I + + + + G+ + Sbjct: 195 PLLDVVRTRIDTYLDHRDKAIPGNTAPALFLGAKGRRLSPGVAQRALRRERATLGLSDDA 254 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 + H +R AT AG L G ++ + YT+ L + + Sbjct: 255 TPHALRHAFATHLLAAGTDLRTLQTLLGHSSLKTTQGYTEIDAGRLLAVHAAA 307 >gi|319935664|ref|ZP_08010095.1| hypothetical protein HMPREF9488_00926 [Coprobacillus sp. 29_1] gi|319809322|gb|EFW05757.1| hypothetical protein HMPREF9488_00926 [Coprobacillus sp. 29_1] Length = 356 Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 45/298 (15%), Positives = 93/298 (31%), Gaps = 36/298 (12%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRSGVESRKH- 128 K L Y +S L + S E Y +++ + G+ D IT +R + + Sbjct: 3 FKELYCVYIESVQL-ELKRTTIDSIEYRYKNRLDERFGNLDIESITIDMVREYQKEMLYQ 61 Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED--MQQFK 183 + + + MR + V + V N + +++ K + + D + + Sbjct: 62 DNLSAEYINRIIGIMRQILDCGVTRNLVKENVLVKIKKVKDQYRIDKKQVIWDLDVFRTF 121 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----------------IFSIKT 226 + +L F L + GLR + ++ Sbjct: 122 DSYIADDMDKLLFNMLYFLGLRKGELLSLKWSNINFEKKIVNVISTAVQIVGKGQIVTTP 181 Query: 227 QKTGTIITVELPDGFMKLLAMTPIGK-------ETFFINNDKQKMNATQFSIWFKAKATK 279 + +I + + D ++L+ +I + ++ + Sbjct: 182 KTNHSIRGICMNDTLFEMLSNYYFKMKLQYDVVNHLYIFGSNKMISFSALDRKLAKYLKL 241 Query: 280 AGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKGAD--RIRLGI 333 +GV K + HG R AT+ A + G ++VD Y D + L Sbjct: 242 SGVEKINLHGFRHSHATMLASLTTDIKSISDRLGHESVDVTLNEYIHSNDFAQKELAD 299 >gi|144899499|emb|CAM76363.1| phage integrase [Magnetospirillum gryphiswaldense MSR-1] Length = 427 Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 56/390 (14%), Positives = 124/390 (31%), Gaps = 49/390 (12%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGR--RIRLPYPHES------TFIPAYMSALT------ 52 LP F + + + + G+ R+ + T A A Sbjct: 29 LPAFGVRLSHAGTRSYFVMTRVGGKVARLTIGKAKARDDSPGLTLAEARKRAGELTEQAG 88 Query: 53 -----GSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKS 106 K E + K T + + + LA ++++ ++ Q Sbjct: 89 IGHDPRQIKKAEKQVNEEKAANTFRVAAERFMRQHVEPRLAASTKMDYKWALFGQDTAAW 148 Query: 107 GDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164 + IT +R +++ + +P+ A + L + F W ++ + + P + ++ P Sbjct: 149 ANKPVDSITRADVRRALDATIERGSPAGANKLLAYLSKFFNWCAERDLLEVPPTIRIKPP 208 Query: 165 KRKTEGIRPWTKEDMQQFKSFWS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223 K+ G R ++ + + EG F+ LL +G R +++ + + + Sbjct: 209 SPKSVGERTLNHAEVADVWAAFEAEGGLFCDLFKLLLLTGQRRTETAGMRLSEISDLDGE 268 Query: 224 IKTQKTGTIITVELPDG-------FMKLLAMTPIGKETFFINNDKQKMNATQFSI----- 271 + T + ++ PI + F+ + +S Sbjct: 269 KPVWEIPGNRTKNSRPHAVPLSPQVVAIIKGRPIVGDLGFLLTTTGTTGTSGYSNAKERV 328 Query: 272 --WFKAKATKAG----VNKSAHGVRKFSATISADA-GATAHELMATYGWKT----VDQAE 320 W + +AG + H +R+ T+ + G H + A + A Sbjct: 329 DAWIAKRREEAGEQPMPRWTLHDLRRTMVTMMNEHVGIAPHVVEACVNHVSGMAKAGVAG 388 Query: 321 TYTKGA---DRIRLGIKNSRRISSVVDSDD 347 Y K DR R + + ++ D Sbjct: 389 VYNKALYMDDRRRALEAWAAYLDGIISPKD 418 >gi|81428201|ref|YP_395201.1| site-specific recombinase, prophage lsa1 integrase [Lactobacillus sakei subsp. sakei 23K] gi|78609843|emb|CAI54890.1| Site-specific recombinase, prophage lsa1 integrase [Lactobacillus sakei subsp. sakei 23K] Length = 385 Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 51/364 (14%), Positives = 106/364 (29%), Gaps = 50/364 (13%) Query: 26 RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85 + G +R +S L + P T + + ++ Sbjct: 26 QTGKEKRTTRRGFKTRKEARLALSMLELQADSGQLDQQPIN--LTFEDVYQQWWAGY-IN 82 Query: 86 SLAVNS-RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQFLTSMRVL 143 ++ ++ + + + I+ G + R ITT +++ + K T S + + Sbjct: 83 TVRESTMYKQKKVFQNHILPAFGKYRIRTITTSQVQTTLNKWFKQTDYSFKPWFNYTSAI 142 Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP----RLAFEFL 199 FK+A+ Q Y+ NPC V PK+ + + Q F F L Sbjct: 143 FKYAILQGYIKDNPCTRVTMPKKLDKEDTLNFWDKDQLKTFFNGIDPVNDLEKYTLFRVL 202 Query: 200 LYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTII---------------------- 233 ++G+R + L + Sbjct: 203 AFTGIRRGECLSLTWDDLNVQKATLDINKTLTHGDKGRLLIQPTKTKKGTRVISLDESTL 262 Query: 234 ---TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF---SIWFKAKATKAG------ 281 + L + ++ + K S W +A A Sbjct: 263 LYLKKWHLEQRRMYLMLGYNINKSNQLIFATSKNTFKSLNTPSKWLRALIDDANKSGANL 322 Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRIS 340 + + HG R A+ AGA+ E+ G + YT + + G + +++ Sbjct: 323 PSITVHGFRHSHASALFSAGASIKEVQERLGHEDAQTTLNIYTHVTE--KQGQEAVQKLV 380 Query: 341 SVVD 344 + ++ Sbjct: 381 NFLN 384 >gi|67920907|ref|ZP_00514426.1| Phage integrase:Phage integrase, N-terminal SAM-like [Crocosphaera watsonii WH 8501] gi|67857024|gb|EAM52264.1| Phage integrase:Phage integrase, N-terminal SAM-like [Crocosphaera watsonii WH 8501] Length = 279 Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 45/258 (17%), Positives = 91/258 (35%), Gaps = 12/258 (4%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKH 128 LI+ + + +R ++S Q IR G ++ + I +E + + Sbjct: 11 SELITTWLLHQS----SKLTRQHYQSNIKQFIRFIG-LSLEEVKIEDIHGFVRMLELKGN 65 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 PS+ L++++ LF +A + Y+ N + V+ PK + + + + Sbjct: 66 KPSTIKGKLSTVKSLFSFAYKVGYLTSNVAVLVKSPKVNKRIASMRIENEDIRKMVDGTN 125 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--ITVELPDGFMKLLA 246 + RL + + + GLR S+ R + N I + E + L Sbjct: 126 SKRDRLIIKMMYFLGLRVSEVLRLKWSYFYQNKVFISGKGNKERSLNLPEELFLELSELK 185 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATA 304 F +++ +I + G++ H + + S D G Sbjct: 186 SEFNPTFVFTAYQRDEQLKRQAVNIMLNRLKKRLGIDANIHPHKFKHEHSMTSLDNGCDI 245 Query: 305 HELMATYGWKTVDQAETY 322 H L + G +V E+Y Sbjct: 246 HLLSRSLGHSSVSITESY 263 >gi|307314516|ref|ZP_07594119.1| integrase family protein [Escherichia coli W] gi|306905939|gb|EFN36461.1| integrase family protein [Escherichia coli W] gi|315060085|gb|ADT74412.1| integrase family protein [Escherichia coli W] gi|323379357|gb|ADX51625.1| integrase family protein [Escherichia coli KO11] Length = 350 Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 46/328 (14%), Positives = 87/328 (26%), Gaps = 36/328 (10%) Query: 19 GKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76 GK I Y GRR+R A+ + T + ++ TLK ++ Sbjct: 9 GKWICECYPAGRSGRRVR-KQFATKGEALAFERHIMEETEAKPWLGESVD-RRTLKDVVE 66 Query: 77 EYRKSAHWGSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVESR------- 126 + K L S + E +D++I G+ +T+K + R Sbjct: 67 LWFK------LHGKSLTAGEHVYDKLILMVEALGNPLATDLTSKMFAHYRDKRLTGEIYF 120 Query: 127 ------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 +P + + + +F R + L R E W + Sbjct: 121 SEKWKKGASPVTINLEQSYLSSVFSELSRLGEWSYPNPLENMRKFTIAEKEMAWLTHEQI 180 Query: 181 QFKSFWSEGSQPRLAFE--FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 + P LA L +G R ++ + + K ++ + Sbjct: 181 VELLADCKRQDPILALVVKICLSTGARWREAVNLTRSQVTKYRITFVRTKGKKNRSIPIS 240 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISA 298 + + F + + + H +R A Sbjct: 241 KELYEEIMALDGFNFFTDCYFQ--------FLSVMEKTSIVLPRGQLTHVLRHTFAAHFM 292 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGA 326 +G L G + Y A Sbjct: 293 MSGGNILALQKILGHHDIKMTMRYAHLA 320 >gi|317133822|ref|YP_004089733.1| integrase family protein [Ruminococcus albus 7] gi|315450284|gb|ADU23847.1| integrase family protein [Ruminococcus albus 7] Length = 326 Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 30/247 (12%), Positives = 87/247 (35%), Gaps = 19/247 (7%) Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 ++ + R++ S+ + TS++ + + A + + + + +S+E P K + + Sbjct: 82 YMVWLKDERQNGASARARKTTSLKQFYDYLANKAQLIPKDNMVSLEVPHVKRALPKYLSL 141 Query: 177 EDMQQFK--SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTII 233 +++Q+ + L G+R S+ C + + +++ K Sbjct: 142 DEVQKLLSSIRTKNTERDYCIITLFLNCGMRLSELCGININDISFENKTLRLMGKGKKER 201 Query: 234 TVELPDGFMKLLAMTPIGKETFFINND---------KQKMNATQFSIWFKAKATKAGVN- 283 + L + + + ++ + + + K +++ + + AG+ Sbjct: 202 IITLNNNCLDAIEKYLPYRKNYEMAQNEKALFLSSRKNRLSRRRVQKIIEECIMDAGLKN 261 Query: 284 --KSAHGVRKFSATISADA-GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 + H +R +AT+ + G + G ++ E YT + Sbjct: 262 TGVTTHKLRHTAATLMYNNNGGDILAVKEILGHESTATTEIYTHLGSEK--MKNTMDVME 319 Query: 341 SVVDSDD 347 ++ D Sbjct: 320 DLLKKKD 326 >gi|239983801|ref|ZP_04706325.1| integrase [Streptomyces albus J1074] gi|239983807|ref|ZP_04706331.1| integrase [Streptomyces albus J1074] gi|291455603|ref|ZP_06594993.1| phage integrase [Streptomyces albus J1074] gi|291455609|ref|ZP_06594999.1| phage integrase [Streptomyces albus J1074] gi|291358552|gb|EFE85454.1| phage integrase [Streptomyces albus J1074] gi|291358558|gb|EFE85460.1| phage integrase [Streptomyces albus J1074] Length = 385 Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 58/368 (15%), Positives = 111/368 (30%), Gaps = 46/368 (12%) Query: 15 RTRHGKII--YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 R + G+ Y G R+R + L + + +L Sbjct: 14 RRKDGRYQGAAYVTNTDGHRVRKFVYGST--YDEAAEKLGKLQEQERNGVPVPSRTWSLG 71 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT-- 129 ++ + + + N+ + +ES ++ G ++T +RS + K T Sbjct: 72 EWLAYWLEHIVKPNREHNTYVKYESKVRLYLVPHLGMKPMARLTPAQLRSFMAELKRTEV 131 Query: 130 -PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 P++ + L +R AVR+E + N V+ PK + +PW+ + F + Sbjct: 132 PPAARFEVLRVLRNALNRAVREELLTRNVAELVDMPKVTKKEAKPWSAREAIAFL-RSAR 190 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL----------- 237 + A +L GLR S+ Q + + K + Sbjct: 191 AHRLYAACVLVLVLGLRRSEVLGLRWQDIDFDQRQFTPLKQVQRVKGIGLVLKDLKTESS 250 Query: 238 ------PDGFMKLL-----------------AMTPIGKETFFINNDKQKMNATQFSIWFK 274 P+ + L G++ F + ++ FS F Sbjct: 251 HAVLPLPEFCARALKERRELQDLERRIVGDAWSQEAGQDLIFSSERGGPIDPVGFSRTFN 310 Query: 275 AKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGA-DRIRL 331 A +AGV + + R T+ A A + YT D R Sbjct: 311 ALVKRAGVRRITVRLARHTCGTLLAFLKVHPKVAQAILRHSQISMTMDVYTHVVGDGERE 370 Query: 332 GIKNSRRI 339 + + Sbjct: 371 AVTMLAEL 378 >gi|169824446|ref|YP_001692057.1| site-specific tyrosine recombinase XerC [Finegoldia magna ATCC 29328] gi|302380744|ref|ZP_07269209.1| site-specific tyrosine recombinase XerC [Finegoldia magna ACS-171-V-Col3] gi|167831251|dbj|BAG08167.1| integrase [Finegoldia magna ATCC 29328] gi|302311687|gb|EFK93703.1| site-specific tyrosine recombinase XerC [Finegoldia magna ACS-171-V-Col3] Length = 326 Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 41/303 (13%), Positives = 85/303 (28%), Gaps = 47/303 (15%) Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS--------------------G 107 P L + Y ++ + N+ + + +I+ Sbjct: 5 PMILMDFLD-YLETI--KGRSSNTVKEYAYDINLMIKYIIARKQNIKLKSFDDIVKIDSS 61 Query: 108 DFDYRKITTKHIRSGVESRKHTPSSAIQ-------FLTSMRVLFKWAVRQEYVAI-NPCL 159 D D + + +S+R +K+ + + I NP Sbjct: 62 DVDLNFFKNIDVIDLHSFMGFLDHNRSNGSSTRSRKTSSIRTFYKYLINIRKLDIINPAE 121 Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFW------SEGSQPRLAFEFLLYSGLRCSDSCRAG 213 ++ PK+ T ++ S+ L G+R S+ Sbjct: 122 LLDSPKKNIRQPVYLTLDESLDLLKVILREKDEEIKSRDYCITVLFLNCGMRLSELSSIN 181 Query: 214 VQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN-----NDKQKMNATQ 268 + H++ N K TV L D + + + + + +M+ Sbjct: 182 IDHIKTNTLR-VIGKGNKERTVYLNDMCLDAIDNYLKIRPEIDNDALFISKKRNRMSNRA 240 Query: 269 FSIWFKAKATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTK 324 + G + S H +R +AT+ G L G ++V + YT Sbjct: 241 IQYRIEHYLKIGGFDTSIYSVHKLRHTAATLMYQYGNVDIKVLQEILGHESVSTTQIYTH 300 Query: 325 GAD 327 + Sbjct: 301 VDN 303 >gi|157311136|ref|YP_001469181.1| integrase [Streptococcus phage P9] gi|119104285|gb|ABL61030.1| integrase [Streptococcus phage P9] Length = 359 Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 38/350 (10%), Positives = 98/350 (28%), Gaps = 27/350 (7%) Query: 12 TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 ++ + +R G++ T A ++A T T+ Sbjct: 4 YRKLDSGWEYRITYRDSQGKKREKSKRGFKTKTLAKVAAQQAETDLNTLTADLLD--ITV 61 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 + + + ++ F I G + IT + + + Sbjct: 62 LDYNKRWADIYKRPHITAKTWQTYTKNFKHIEHYFGTRKLKSITHTFYQQVLNDFGEKVA 121 Query: 132 --SAIQFLTSMRVLFKWAVRQEYVAINPC-----LSVERPKRKTEGIRPWTKEDMQQFKS 184 + +F ++ K A+R + N S + K ++E ++ + Sbjct: 122 QQTLDKFHYQIKGACKMAIRDGIIRDNFADEAIVRSQKPAKEESEKFMEESEYLAFIKTA 181 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN---------------IFSIKTQKT 229 L + +GLR +++ + + + T+ Sbjct: 182 KEKIKYPSYLTTYIIAITGLRFAEAQGLTWKDIDFDNGYVDVNKTFDYSISQNFRPTKNE 241 Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGV 289 +I V + + ++LL + + + K G N + H + Sbjct: 242 QSIRKVPIDNNSVELLKYFKDNHYQDNKLSRICFGASNNATN--KVIKRVTGRNLTNHSL 299 Query: 290 RKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGIKNSRR 338 R A+ G + G + ++ + Y + ++ + + Sbjct: 300 RHTYASYLIAQGVDLISVSKLLGHENLNITLKVYAHQIESLKEKNDHQVK 349 >gi|66047873|ref|YP_237714.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas syringae pv. syringae B728a] gi|63258580|gb|AAY39676.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas syringae pv. syringae B728a] Length = 317 Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 41/271 (15%), Positives = 84/271 (30%), Gaps = 31/271 (11%) Query: 89 VNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRV 142 +R ++++ D+R++T H+ + + ++ + L ++ Sbjct: 36 PRTRRAYQNDLTDFSSFIVLASADDFRQVTRSHVLAWRADLEQRGLAGATIRRKLAALAS 95 Query: 143 LFKWAVRQEYV---AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLA 195 LF + V + R + + E G + R Sbjct: 96 LFDHLLENNAVVGGNPVHGVKRPRIESNEGKTPALGDHQAKALLDAPDESTLKGLRDRAM 155 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---------------IITVELPDG 240 LLY GLR ++ + V +Q + G I + L Sbjct: 156 LAVLLYHGLRREEAAQLQVSDIQERRGIQHLKIHGKGGKVRYLPLHPVAAGRIHMYLERS 215 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATIS 297 L+ + + ++A A A KAG+ HG+R +AT + Sbjct: 216 GHHLVDKKVPLFISLRGKSTGAGVSANGIYTVVGAYAKKAGIKVDGLGVHGLRATAATNA 275 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADR 328 + A ++ A G + + Y + +R Sbjct: 276 LEHEADIAKVQAWLGHANISTTKIYDRRENR 306 >gi|329313062|gb|AEB87475.1| Integrase [Staphylococcus aureus subsp. aureus T0131] Length = 405 Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 42/401 (10%), Positives = 108/401 (26%), Gaps = 73/401 (18%) Query: 12 TKERTRHGKIIYYF--RKGH---GRRIRLPYPHES----TFIPAYMSALTGSTPKREYIN 62 +E T++ Y + R G+ + + A + + ++ + Sbjct: 3 VREITKNNSTAYRYLERYTDPLTGKYKTVSVTRNKNNVRSQKDAQLELNKIIEQRLKHNS 62 Query: 63 SPRKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDF-DYRKITTKHIR 120 + + + T + E+ + + +S + + KIT +++ Sbjct: 63 TKQLEKLTFHDVCDEWLEHYKTHSGSKPTTIKEKKSNANTVKNAIDSKVLISKITHTYLQ 122 Query: 121 SGVESRKHTPSS--AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK-- 176 + + + S + +R +FK+A + + L +K + Sbjct: 123 NIINEWAKSHSIGHVQSLVIVIRSVFKYAFKYYDLHDISVLDKIDIPKKAQTRNELQAKR 182 Query: 177 -------------EDMQQFKSFWSEGSQPR------LAFEFLLYSGLRCSDSCRAGVQHL 217 + ++ R EF + +G+R + ++ Sbjct: 183 NNYLEDSEVKELLQCFDYLIKHKRHATRKRNYEMVKALVEFQINNGMRIGELLAIKKDNI 242 Query: 218 QNNIF---------------------SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF 256 T+ + + T+ L + LL + + Sbjct: 243 NYEDKTLDIDGTINWVTDKETGAFGVKETTKTSKSYRTIGLTTQSINLLKTLILDNKKEN 302 Query: 257 INNDKQ-------------KMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAG 301 N+ ++ + + K + +NK H +R + A G Sbjct: 303 QWNEDFIDRGYVFTNTAGSPIDLNKVNSIIKEATEISSINKRVTTHTLRHTHISTLAQLG 362 Query: 302 ATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISS 341 + G E YT D+ + ++ Sbjct: 363 INLKAIQDRVGHSDYKTTLEIYTHVTDQ--MAKDMMNKLEE 401 >gi|304382841|ref|ZP_07365324.1| integrase [Prevotella marshii DSM 16973] gi|304336026|gb|EFM02273.1| integrase [Prevotella marshii DSM 16973] Length = 392 Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 46/254 (18%), Positives = 88/254 (34%), Gaps = 16/254 (6%) Query: 91 SRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFK 145 + S+ + + GD +T + K SS Q L + L Sbjct: 126 TCRSYHRQLELFVESKGDSDIPLTTLTMEFFEDYRIHFKRKGYALSSTKQNLFWLSRLMY 185 Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYS 202 AV Q+ + NP + + + IR +K D+ + + + Q R F F +++ Sbjct: 186 RAVSQQTIRYNPFEEAKYERVER-KIRCLSKTDIARLLAMPLQNEQAEFVRRLFLFSVFT 244 Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGT-----IITVELPDGFMKLLAMTPIGKETFFI 257 GL +D + +Q N I+ + L ++L++ P+ + Sbjct: 245 GLAFADVSKLRYCDIQTNNAGIRYIRQDRKKTGVESITPLHPIAEQILSLYPLKDKKEDS 304 Query: 258 NNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKT 315 M+ Q + KA G+ S H R T++ +AG + G + Sbjct: 305 PIFATSMSRIQIGMHLKAIGLACGIRQPLSFHVGRHSFGTLTLEAGVPIESIAKMMGHAS 364 Query: 316 VDQAETYTKGADRI 329 + + Y + D Sbjct: 365 IASTQIYAQITDSK 378 >gi|302345835|ref|YP_003814188.1| site-specific recombinase, phage integrase family [Prevotella melaninogenica ATCC 25845] gi|302149177|gb|ADK95439.1| site-specific recombinase, phage integrase family [Prevotella melaninogenica ATCC 25845] Length = 330 Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 35/264 (13%), Positives = 80/264 (30%), Gaps = 14/264 (5%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRK 127 + L+ + + + + S +Q+ +K TT+ IR+ K Sbjct: 53 ERLLEIFLSAKQVEGCTTPTIKYYGSTINQLFKKMPKK-VTNYTTEDIRAYLAVFQRKHK 111 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + + F W ++Y+ +P + + K T+ T E+++Q Sbjct: 112 SSKVTIDNIRRIFSSFFSWLEDEDYIIKSPVRRIHKVKTGTQIKEVLTDENLEQ-LRDNC 170 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLA 246 + + L +G+R + + + + N I K V L Sbjct: 171 TRVRDLAMIDLLASTGMRVGELVKLNREDINFNERECIVFGKGNKERIVYFNARAKIHLQ 230 Query: 247 MTPIGKETFFIN------NDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISAD 299 ++ ++ + + + + H R+ AT++ D Sbjct: 231 QYLAERKDRNKALFVSLAKPHNRLQISGVETRLRKIGRLSKIVRVHPHKFRRTLATMAID 290 Query: 300 AGATAHELMATYGWKTVDQAETYT 323 G ++ G +D Y Sbjct: 291 KGMPVEQVQKLLGHVKIDTTMHYA 314 >gi|153807019|ref|ZP_01959687.1| hypothetical protein BACCAC_01296 [Bacteroides caccae ATCC 43185] gi|149130139|gb|EDM21349.1| hypothetical protein BACCAC_01296 [Bacteroides caccae ATCC 43185] Length = 307 Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 28/306 (9%), Positives = 81/306 (26%), Gaps = 34/306 (11%) Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR 126 T + + + + ++ +++ ++ + G IT K ++ V + Sbjct: 4 KKTFHEVSEIWCDAKRPI-VKHSTLCAYQLTLQTHLLPRFGA--AENITEKDVQQFVIDK 60 Query: 127 KHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + + + ++ + K+ + + + + + + Sbjct: 61 CTSGLARKTVRDIVAVLKSVIKYGNKHGIFHFEEWEIEYPTQTENKLPPTLSLNHQRILM 120 Query: 184 SFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL----- 237 E + + L +G+R + C + + ++ Q T I Sbjct: 121 RHLLEQPTPQNIGVLLALCTGMRIGEVCALKWEDVDFAQKTVIVQHTVGRIYNCELKSTE 180 Query: 238 ------------------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279 F L + + + + Q + +F + Sbjct: 181 RVHSSPKTKNSCREIPISKQLFQALKMVRKQSQSPYVVGTSIQSKEPRSYRDYFGRLLKR 240 Query: 280 AGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLGIKNS 336 + HG+R AT ++ + G V Y ++ + I Sbjct: 241 LDIPHLVFHGLRHTFATRCIESQCDYKTVSVILGHSNVATTLNLYVHPNLNQKKRCIDRM 300 Query: 337 RRISSV 342 + Sbjct: 301 SNFLGI 306 >gi|270157652|ref|ZP_06186309.1| phage integrase family site-specific recombinase [Legionella longbeachae D-4968] gi|269989677|gb|EEZ95931.1| phage integrase family site-specific recombinase [Legionella longbeachae D-4968] Length = 409 Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 56/367 (15%), Positives = 117/367 (31%), Gaps = 32/367 (8%) Query: 10 FVTKERTRHGKIIYYFRK---------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60 + T IY ++ GH + L FI + TG PK Sbjct: 28 GIFIYPTGSKTWIYRYKIDDKKDYMIIGHYPEMSLAEAK-KKFIDLRVIRRTGINPKLVT 86 Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 + T+K I + + + + II GD + +KI TK I Sbjct: 87 KKEEEQAKYTVKEFILNWYTNYIERHRKQ-PQQIKQHINADIIPSLGDIELQKIQTKDIT 145 Query: 121 SGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK---RKTEGIRPWT 175 ++ ++ +P A + L++++ F +AV + +AINP +++ ++ R T Sbjct: 146 KELDKIVKRGSPVHANKVLSTIKQAFNYAVSRGELAINPAVNIRARDIGGQEKPRDRFLT 205 Query: 176 KEDMQQFKSFWSEGSQPRLAFEFL-----LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230 ++++ F + L +G+R + A Sbjct: 206 LDEIKILWEFLNSDLSAISLQIKNSLKLLLLTGVRFGELRIAKWSEFDFQNSMWTIPAKN 265 Query: 231 TIITVELPDGFMKL-------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 T + + +L L G+ + ++ + + Sbjct: 266 TKTGIVMHVHLTELVISILKELYNCSEGEYVISGADGINAISDKALPKAVIRIQDRVNIP 325 Query: 284 -KSAHGVRKFSATISADA-GATAHELMATYGWKTVDQAETYTKG--ADRIRLGIKNSRRI 339 + H +R+ AT +A + G K TY K + + ++ + Sbjct: 326 QWTPHDLRRTFATQLGEALNIDPVVIEKCLGHKMPKIMATYNKNEMLPQRKEALERWSTL 385 Query: 340 SSVVDSD 346 S + ++ Sbjct: 386 ISNLINN 392 >gi|229071996|ref|ZP_04205206.1| Integrase/recombinase [Bacillus cereus F65185] gi|228711155|gb|EEL63120.1| Integrase/recombinase [Bacillus cereus F65185] Length = 322 Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 30/300 (10%), Positives = 81/300 (27%), Gaps = 24/300 (8%) Query: 58 REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117 + + K +++ +S + L + +E + + +G +++T + Sbjct: 19 DRKLERKQVKGLSIEKALSTVIRQMRATGLRDRTISDYELHVGHFMSVTGAQFLQELTVE 78 Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 HI + S + + + L ++ ++ N V+ +E Sbjct: 79 HIYLWLSSMNVSNQTKLTRLKCLKAFLGRCFDNGWIEFNFWKGVKIKVDSPVKEGATDRE 138 Query: 178 DMQQFKS---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ----KTG 230 F + + + +G+R + +H+ ++ K Sbjct: 139 INLLFSVLDLTRFIELRDAASVLLMYQTGIRVGTLSQLEHKHVNLENKVLRIDGGIIKNH 198 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQK---------------MNATQFSIWFKA 275 I + D ++L + + + Sbjct: 199 ESIHLPFDDVLARVLGALMKQNDIIRKECHVKNDYLFITKNGGRIATSPTNNNITKRLSK 258 Query: 276 KATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334 + G+ + H +R+ A GA + G + Y D+ + Sbjct: 259 HSKDYGLKNINPHALRRGFAKNLLKKGANIALISKALGHSDLAVTTRYLH-LDKEEVAES 317 >gi|225377375|ref|ZP_03754596.1| hypothetical protein ROSEINA2194_03023 [Roseburia inulinivorans DSM 16841] gi|225210776|gb|EEG93130.1| hypothetical protein ROSEINA2194_03023 [Roseburia inulinivorans DSM 16841] Length = 404 Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 38/288 (13%), Positives = 79/288 (27%), Gaps = 27/288 (9%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR- 126 L L SE+ K+ + ++ + G D++ +T I + + S Sbjct: 112 LHDLFSEFLKAEEHRHFSESTMKQLRGRLMRFHDYLYDIGIRDFKSVTGSIINTYILSLA 171 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK--- 183 +++ + + L +R L + ++ + K + P T D + K Sbjct: 172 RYSTTYVSESLREIRRLLTFGYENGFIDTPLSDFIPHVKNIRQQKIPSTFTDTEIEKILN 231 Query: 184 ---SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN------NIFSIKTQKTGTIIT 234 G + F G+R SD ++ + Sbjct: 232 SVDRSNPIGKRNYAIFLIAARLGIRSSDIRTLTFSNINWDDKLISFCQQKTGHALSLPLP 291 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNA--TQFSIWFKAKATKAGVNKSA------ 286 ++ + L I + AG+N + Sbjct: 292 DDVGWAIIDYLKNGRPETNVKNIFVSHMYPYGELHSLGNVIPRQMRTAGIN-TPANKRTG 350 Query: 287 -HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 H R AT + + + T G + E Y + +L + Sbjct: 351 MHAFRHGLATRMLENDVSLPVISQTLGHADISSTEVYLR-ISIKQLAL 397 >gi|315924314|ref|ZP_07920537.1| tyrosine recombinase XerC [Pseudoramibacter alactolyticus ATCC 23263] gi|315622385|gb|EFV02343.1| tyrosine recombinase XerC [Pseudoramibacter alactolyticus ATCC 23263] Length = 355 Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 45/336 (13%), Positives = 97/336 (28%), Gaps = 54/336 (16%) Query: 48 MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-------- 99 + L +++ L L Y S ++N+ S+++ Sbjct: 12 EAKLLPEDKTNAPKIPSKRQNAILTDLAD-YLIS--AKGYSLNTIRSYQNDLIQFFRFLR 68 Query: 100 ------DQIIRK----SGDFDYRKITTKHIRSGVE-------SRKHTPSSAIQFLTSMRV 142 D+ D+ ++ + R + ++ + ++R Sbjct: 69 RRFGQVDRDCPFEAIDISPIDFSLLSAVQLADIYAFLGYASVQRGNGNTTRKRKTAAIRA 128 Query: 143 LFKWAVRQEYV-AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR--LAFEFL 199 L+ + + +P ++E PK K T ++ + ++ R Sbjct: 129 LYHYLTVVLQLDMSDPTQNLEVPKIKQRDPIYLTLDEAMSLLNAIDGRNKERDLAIVTLF 188 Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259 L G+R S+ ++ +Q+ I + V L D + L ++ Sbjct: 189 LNCGMRLSELTNLRLKDIQDETLHIVGKGN-KERDVILNDACVNALEAYYPIRKQQIERI 247 Query: 260 DKQ------------------KMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISA 298 + Q ++ KAG++ + H +R +AT+ Sbjct: 248 EAQSDKVVKVDDHLFLSSRGRGISNRMVEGMVHKYILKAGLDANKITVHKLRHTAATLMY 307 Query: 299 DAG-ATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 G L G + V E YT D Sbjct: 308 KYGQVDIRTLQKVLGHENVSTTEIYTHIEDDDVRAA 343 >gi|50122313|ref|YP_051480.1| site-specific tyrosine recombinase XerC [Pectobacterium atrosepticum SCRI1043] gi|49612839|emb|CAG76289.1| probable integrase/recombinase protein [Pectobacterium atrosepticum SCRI1043] Length = 340 Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 41/292 (14%), Positives = 90/292 (30%), Gaps = 36/292 (12%) Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVES 125 TL+ + Y + + + + + G +++ + + Sbjct: 19 QTLRQYTTAYLAHLTATNHSPRTVEGYGERLRPFVTWCEERGLTQAAQVSLAVLEAYQRH 78 Query: 126 RKH----------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW- 174 + LTS+R+LF+W +++ ++ NP + PK + Sbjct: 79 LHGYRKADGKPLAQGGQLNR-LTSIRMLFRWLLQRHHILYNPAEQMTLPKAEKRLPAQIL 137 Query: 175 ----TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230 T+ M + G + R E L +GLR S+ + + + + G Sbjct: 138 SEEETEAVMDAQDTETLTGLRNRAVLEMLWSTGLRRSELAGLMLDDVDVGRGVLVV-RQG 196 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA--------------K 276 + ++ L + + + F + Sbjct: 197 KGNKDRVVPVGLRALVWVQRYLDAVRPRLTTKHDSGALFVTIWGKTLGRATLTILAGSAI 256 Query: 277 ATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 +A + K+ H R AT + GA + A G + ++ + YT+ A Sbjct: 257 REQAHLKKAGACHVFRHSMATQMLENGADTRYIQAILGHEKLETTQIYTRVA 308 >gi|315164754|gb|EFU08771.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX1302] Length = 382 Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 52/375 (13%), Positives = 120/375 (32%), Gaps = 43/375 (11%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP---- 64 +V + G + +R + ++ + +A + + + Sbjct: 11 KYVFSYSNKKG-TFWGYRYPYYNSLKHRKEASKRGFESERAANKALLKIQYALETQNTSF 69 Query: 65 -RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKI-----TTK 117 K T+ I + A + +V+++ + ES I G+ + + Sbjct: 70 IENKQLTIDEWIDVWIPYAQ-DNWSVSTKQNIESAIKFHISPLIGNQKLSSLNKITYKRE 128 Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 I + K+T S+ + + + AV + + N + KE Sbjct: 129 FIDKLRQKNKYTESTIQTWHKIVMRMINAAVHNQIIPSNTLTGFKF-DLSNNVRSFSKKE 187 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL------------QNNIFSIK 225 + +E Q ++ F LL SG+R + + + + K Sbjct: 188 LQRFVAVLENEDIQTQVIFLTLLKSGMRKGELMGLRWSDIDLAEKYFDINSTRGDYGENK 247 Query: 226 TQKTGTIITVELPDGFMKLLAMTPIG--------------KETFFINNDKQKMNATQFSI 271 + +I V + + L+ K+ F +++ + ++ + Sbjct: 248 PKTKTSIRKVYFDNSLLTLIKKYKNHEKERLLREGIILRDKDYFILSSRNLPIKQSRITY 307 Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA-DR 328 F+ KA V N + HG+R AT +AGA + G K ++ + Y+ + Sbjct: 308 IFRLLCEKAEVQNITVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVYSDVLKEE 367 Query: 329 IRLGIKNSRRISSVV 343 + ++ + Sbjct: 368 EKETADLMDKLIENL 382 >gi|239624725|ref|ZP_04667756.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239521111|gb|EEQ60977.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 296 Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 43/283 (15%), Positives = 85/283 (30%), Gaps = 30/283 (10%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR--- 126 I Y +S L ++ + D +I +I +R Sbjct: 3 FVDFIEIY-QSDACSRLKKTTQANKRFLIDSKITPYFVKLPLSEIKPTDVRKWQNELMAL 61 Query: 127 ------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKEDM 179 ++ + + +F +AV+ ++ NPC +K+ + WT E+ Sbjct: 62 KDEKGKGYSETYLKTINNQLTSIFNYAVKFYHLPENPCHLAGSMSKKSATPKEFWTPEEF 121 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------- 232 +F E + F L ++G+ + + I+ +K Sbjct: 122 NKFIVALKEAPESYTMFMLLYFTGIHEGEMLALTPLDIDFERSIIRIEKNYQCVDGEDYI 181 Query: 233 ---------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 TV +P+ K LA ++ T+ K+GV Sbjct: 182 TSPKTHKGNRTVVMPEVIKKCLADYMEQVYGLKPDDRLFPYYKTKLYKDMNKACKKSGVK 241 Query: 284 K-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK 324 K H +R ++ D G + + + V E Y+ Sbjct: 242 KNRVHDIRHSHTSLLIDMGCSPLLVAERLCHERVSTTTEVYSH 284 >gi|168483748|ref|ZP_02708700.1| integrase [Streptococcus pneumoniae CDC1873-00] gi|172042819|gb|EDT50865.1| integrase [Streptococcus pneumoniae CDC1873-00] Length = 388 Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 48/386 (12%), Positives = 114/386 (29%), Gaps = 56/386 (14%) Query: 11 VTKERTRHGKIIYY------FRKGHGRRIRLP-YPHESTFIPAYMSALTGSTPKREYINS 63 +T+ + G +Y G++++ + A K Sbjct: 3 ITEYTKKDGTTVYRSSVYLGIDTVTGKKVKTTISGRTKRELKAKALQAQIDFEKGGSTVY 62 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG 122 + T L+ + ++ ++ + +S + ++ G++ K+T I+ Sbjct: 63 KAVEIKTYAELVENWLETY-CHTVKKATLTIIKSRLNNYLLPAFGEYKLDKLTPPVIQKQ 121 Query: 123 VESRKHTPSSAIQ------FLTSM-RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 V + + L S+ + + K+AV + + NP + P+RK + + Sbjct: 122 VNQWAKEYNQLGKGYQEYPQLNSLNKRILKYAVSLQVIPFNPARDIIVPRRKEKEGQKLK 181 Query: 176 KEDMQQ---------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI---FS 223 D + + ++ LL +GLR + + Sbjct: 182 YLDDDNLKKFLTYLEQLPNTYKNFYDTVLYKTLLATGLRIRECLALKWSDIDLQNGTLDV 241 Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIG---------------------KETFFINNDKQ 262 KT +T ++++ + E F N+ + Sbjct: 242 NKTLNCEKEVTTPKTKSSIRVIDLDNKTVLMLRLYKNRQAQVGREIGLTYEKVFSNSFDE 301 Query: 263 KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE- 320 +A + + + + H R A+I +AG E+ G + Sbjct: 302 YRDARALRSRLEKHLKLSDCPRLTFHAFRHTHASILLNAGLPYKEIQTRLGHAKLSMTMD 361 Query: 321 TYTKGA-DRIRLGIK----NSRRISS 341 Y+ + D + ++ S Sbjct: 362 IYSHLSKDNKKNATSFYEKAIEKLKS 387 >gi|114047627|ref|YP_738177.1| integron integrase [Shewanella sp. MR-7] gi|113889069|gb|ABI43120.1| integron integrase [Shewanella sp. MR-7] Length = 319 Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 32/297 (10%), Positives = 69/297 (23%), Gaps = 50/297 (16%) Query: 80 KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 + ++ + ++ + I G + T+ + + + + AI Sbjct: 13 EEMRMRGYSIRTETTYLYWIKAFINFHGKRHPETMGTEEVTQFLTFLANQRNVAINTQKI 72 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199 + ++ L ++ + ++ + +L E L Sbjct: 73 ALNALAYLYQKHLHHELGDLGFCYATKQRHLPTVLSPSEIS--LILNELDGRDKLIIELL 130 Query: 200 LYSGLRCSDSCRAGVQHLQNNIFS--IKTQKTGTIITVELPDGFMK-------------- 243 SGLR S+ R +Q + S ++ K L + Sbjct: 131 YGSGLRVSECLRLRIQDIDIERASLSVRDGKGHKDRQTILSHRCAEKLTTYIEKAIKTQQ 190 Query: 244 -------------LLAMTPIGKETFFINNDKQKMNATQFSIW-------------FKAKA 277 L + T + + + Sbjct: 191 NDNLRGIGPSLPNALERKYPNAFRQHGWMFIFPSSTTCINPYTGTLCRHHLHQSVIRKAL 250 Query: 278 TKA------GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 A + H R AT AG + G V + YT + Sbjct: 251 GNAVRNIQMNKRVTCHTFRHSFATHLLQAGRDIRSVQELLGHNDVSTTQIYTHVLGQ 307 >gi|119384162|ref|YP_915218.1| phage integrase family protein [Paracoccus denitrificans PD1222] gi|119373929|gb|ABL69522.1| phage integrase family protein [Paracoccus denitrificans PD1222] Length = 351 Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 43/363 (11%), Positives = 93/363 (25%), Gaps = 40/363 (11%) Query: 1 MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60 M +LP G R+ + + G + E Sbjct: 1 MATISKLP---------SGSWRVQVRRKGH--YISESFLRRGDAELWARTVEGKIDRGEP 49 Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSR-ISFESYFDQIIRKSGDFDYRKITTKHI 119 I++ T LI +R + S + D + + G ++ + + Sbjct: 50 IHTRVAAAKTFGDLIDLHRADLADVG---RTLGRSKAASLDFLALRLGALKPAELGREKL 106 Query: 120 RSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINP---------CLSVERPKRK 167 R P + L ++ + A + + + Sbjct: 107 VEFGRQRAKEGAGPVTVGIDLGYIKTILSHAAAVHGIIAPTEGVDLARIALTRLGLVGKG 166 Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRL----AFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223 E R ++E++ + + F + + +R + RA + Sbjct: 167 NERDRRPSEEEIDAILKALESNPRQFIPVARVVRFAIATAMRQDEISRARWEDYNPRTKM 226 Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND--------KQKMNATQFSIWFKA 275 + + D + LL+++ N F+ Sbjct: 227 LLIRDRKDPRRKTGNDQRIPLLSVSGFDPCALIEEQRALVGSRGRIFPYNGRSIGTAFRR 286 Query: 276 KATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334 G+ + H +R + + +AG T ++ G K YT + Sbjct: 287 VCRTLGIEDLHFHDLRHEATSRLFEAGFTIEQVALVTGHKDWKMLRRYTHIRPEGLHALA 346 Query: 335 NSR 337 SR Sbjct: 347 ASR 349 >gi|281492428|ref|YP_003354408.1| phage integrase [Lactococcus lactis subsp. lactis KF147] gi|281376092|gb|ADA65583.1| Phage integrase [Lactococcus lactis subsp. lactis KF147] Length = 399 Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 54/383 (14%), Positives = 104/383 (27%), Gaps = 63/383 (16%) Query: 10 FVTKERTRHGKIIYYFRKG-------HGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62 + + +T+ G++ Y R G++I+ + + K+ Sbjct: 5 NIKEYKTKSGEVRYILRGAYIGTDVLTGKQIKTDIRGRTKTGVKNELERLKNEFKKNGNT 64 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRS 121 ++ T + + + V S S D G+ KITT HI+ Sbjct: 65 KGKESLETFGEVAESFFELYKLQQ-KVGSIRQMRSNLDTYAIPAFGNKRISKITTAHIQK 123 Query: 122 GVESRKH---------------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 V + L + +F+ A+ + NPC SV PK Sbjct: 124 QVIEWAKNAAEPLGGKQKRDVGSGKDYKLQLNVINRIFQHALSLGIIDRNPCHSVIIPKV 183 Query: 167 KTEGIRP---------WTKEDMQQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQ 215 K + ++ ++ S L SGLR ++ Sbjct: 184 KIDKPNKEVKFYTKTELSELFSHIESLDNTKWSTQYFNALIRLLVASGLRIGEAMALEWF 243 Query: 216 HLQNNIFSIKTQKTGTII--------------------------TVELPDGFMKLLAMTP 249 + + ++ KT +++ Sbjct: 244 DVDLDNQTVSVSKTTVQRTVIQDTPKTNKSNRVISIDSKAVSTLKRWYFFQKKHFMSLGN 303 Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELM 308 + F M+ + K A + S HG R A++ +AG T + Sbjct: 304 PHQSLVFPTWQGNVMDYHGLNYRLKKIEDAAKLTSLSFHGFRHSHASLCLNAGMTYKVIQ 363 Query: 309 ATYGWKTVDQAE-TYTKGADRIR 330 G T+ Y+ + Sbjct: 364 ERLGHSTLQMTMDLYSHLEPEKK 386 >gi|183220599|ref|YP_001838595.1| putative integrase/recombinase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910707|ref|YP_001962262.1| site-specific recombinase XerD [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775383|gb|ABZ93684.1| Site-specific recombinase XerD [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779021|gb|ABZ97319.1| Putative integrase/recombinase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 298 Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 28/251 (11%), Positives = 71/251 (28%), Gaps = 13/251 (5%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144 A + S+ +++R + I + + + + + + Sbjct: 15 HGYAQKTIRSYTLCMSRLVRYFQKSPL-DLQPIDIYNFFLNLRQSNKTDSTLVLFYCAFL 73 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204 + ++ + V PKRK + + +++ ++ F + + F L SG+ Sbjct: 74 FFYSLRDR--KDMLELVPFPKRKRKAVAVFSQTEVTNFLGNCT-SVCEKSIFTLLYSSGI 130 Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL-------AMTPIGKETFFI 257 R + + + +I + L P F Sbjct: 131 RIGEGLSLQLSDIDFERKAIFIRSGKGGHGRYAILADKTALLLRQYLEIYNPKSYLFFSQ 190 Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKT 315 ++ F+ + + K + H +R AT + G + + G Sbjct: 191 KGKNIPISPRTIQAAFQKIRNLSKIQKYATVHTLRHSFATHLLEDGYSLVYIQKLLGHAD 250 Query: 316 VDQAETYTKGA 326 + Y + Sbjct: 251 IKSTMIYLHVS 261 >gi|319425156|gb|ADV53230.1| integron integrase [Shewanella putrefaciens 200] Length = 319 Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 31/297 (10%), Positives = 68/297 (22%), Gaps = 50/297 (16%) Query: 80 KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 + ++ + ++ + I + T+ + + + + AI Sbjct: 13 EEMRMRGYSIRTEKTYLYWIKAFINFHDKRHPETMGTEEVTQFLTFLANQRNVAINTQKI 72 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199 + ++ L ++ + ++ + RL E L Sbjct: 73 ALNALAYLYQKHLHHELGDLGFCYATKQRHLPTVLSPLEIS--LILNELDGRDRLIIELL 130 Query: 200 LYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMK-------------- 243 SGLR S+ R +Q + +++ K L + Sbjct: 131 YGSGLRVSECLRLRIQDIDIERASLTVRDGKGHKDRQTILSHRCAEKLTTYIEKAIKIQQ 190 Query: 244 -------------LLAMTPIGKETFFINNDKQKMNATQFSIW-------------FKAKA 277 L + T + + + Sbjct: 191 NDNQQGIGPSLPNALERKYPNAFRQHGWMFIFPSSTTCINPYTGTLCRHHLHQSVIRKAL 250 Query: 278 TKA------GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 A + H R AT AG + G V + YT + Sbjct: 251 GNAVRNIQMNKRVTCHTFRHSFATHLLQAGRDIRSVQELLGHNDVSTTQIYTHVLGQ 307 >gi|85059870|ref|YP_455572.1| phage integrase [Sodalis glossinidius str. 'morsitans'] gi|84780390|dbj|BAE75167.1| phage integrase [Sodalis glossinidius str. 'morsitans'] Length = 329 Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 39/304 (12%), Positives = 79/304 (25%), Gaps = 19/304 (6%) Query: 28 GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87 GRR+R + + + ++++ P L LI + + +L Sbjct: 20 RQGRRVR-KKFKTKVEAQQFERWIIATQNNKDWVEKP-ADQRALTELIELWFQHHG-QNL 76 Query: 88 AV--NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRV 142 + + K G+ R+IT R + + Sbjct: 77 KDGLKTVHK----LRVMAAKMGNPKARQITKASFSDYRVLRLAEGKKAKTINLDQEKLGA 132 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202 +F + + L + + + + EG + A L + Sbjct: 133 VFSVLIELGHYHGEHPLKEMKKIKLPVQEMGFLTREEINTLLARLEGDNLKAAKLC-LAT 191 Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262 G R + + + + N + K V + + + F Sbjct: 192 GARWGEVFKLRREEVIGNKVTYLNTKNNKNRAVFISTELCAQIRDSIQNGRLFANL---- 247 Query: 263 KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 N K A ++ H +R A+ G L G ++ Q Y Sbjct: 248 --NYRYVRDCIKEIAPNLPAGQAVHVLRHTFASHFMMNGGNILALQRILGHSSILQTMVY 305 Query: 323 TKGA 326 A Sbjct: 306 AHFA 309 >gi|256619518|ref|ZP_05476364.1| site-specific recombinase [Enterococcus faecalis ATCC 4200] gi|256599045|gb|EEU18221.1| site-specific recombinase [Enterococcus faecalis ATCC 4200] Length = 389 Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 53/375 (14%), Positives = 119/375 (31%), Gaps = 43/375 (11%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP---- 64 +V + G + +R + ++ + +A + + + Sbjct: 18 KYVFSYSNKKG-TFWGYRYPYYNSLKHRKEASKRGFESERAANKALLKIQYDLETQNTSF 76 Query: 65 -RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKI-----TTK 117 K T+ I + A + +V+++ + ES I G+ + + Sbjct: 77 IENKQLTIDEWIKVWIPYAQ-DNWSVSTKQNIESAIKFHISPLIGNQKLSSLNKITYKRE 135 Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 I + K+T S+ + + + AV + + N + KE Sbjct: 136 FIDKLRQENKYTESTIQTWHKIVMRMINAAVHNQIIPSNTLTDFKF-DLSNNVRSFSKKE 194 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI------------K 225 + +E Q ++ F LL SG+R + + N K Sbjct: 195 LQRFIAVLENEDIQTQVIFLTLLKSGMRKGELMGLRWSDIDLNEKYFDINSTRGDYGENK 254 Query: 226 TQKTGTIITVELPDGFMKLLAMTPIG--------------KETFFINNDKQKMNATQFSI 271 + +I V + + L+ K+ F +++ + ++ + Sbjct: 255 PKTKTSIRKVYFDNSLLTLIKKYKNHEKERLFREGIILSDKDYFILSSRNLPIKQSRITY 314 Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA-DR 328 F+ KA V N + HG+R AT +AGA + G K ++ + Y+ + Sbjct: 315 MFRLLCEKAEVQNITVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVYSDVLKEE 374 Query: 329 IRLGIKNSRRISSVV 343 + ++ + Sbjct: 375 EKETADMMDKLIENL 389 >gi|212695524|ref|ZP_03303652.1| hypothetical protein ANHYDRO_00041 [Anaerococcus hydrogenalis DSM 7454] gi|212677402|gb|EEB37009.1| hypothetical protein ANHYDRO_00041 [Anaerococcus hydrogenalis DSM 7454] Length = 411 Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 47/415 (11%), Positives = 101/415 (24%), Gaps = 80/415 (19%) Query: 1 MTPSLRLPPFVT----KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTP 56 M + V + + +G + ++ GRR + + L + Sbjct: 1 MVKRRKDSKGVVLKDGEYQRSNGTYEFKWQDKIGRRKSIYAKTLKELREKELDILRNTID 60 Query: 57 KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKIT 115 S T K + L N+ ++ + Q + G I Sbjct: 61 GINNEGSSLSVNDTFK------LWTKVKRGLKDNTFKNYIYMYQQFVEPTFGRIKLSDIK 114 Query: 116 TKHIRSGVESRKHT----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLS--------VER 163 +RS K S+ T + + + AV EY+ NP + Sbjct: 115 RSDVRSFYNRLKEDQGLMISTIDCVHTVLHQVLELAVDDEYIRFNPSDNALKELKVAYRN 174 Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH------- 216 K + + + +++ S E + F +L++G+R + Sbjct: 175 ESPKKKAMTIEEQVLFEEYLSNSDEYKKWYPIFIVMLWTGMRVGEVTGLQWDDLDFDNGL 234 Query: 217 ---------------LQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261 L N + ++ + M ++TF I Sbjct: 235 INVNRTLVYYSKGKGLNNRYAINTPKTASGKRSIPMVQKVKDAFLMERELQKTFGIECCD 294 Query: 262 ---------------QKMNATQFSIWFKAKATKAGV-----------------NKSAHGV 289 + N + + + + S H Sbjct: 295 SIDGFKDFVFLNRFGKVHNNGTLNKALRRIVRDCNLSIMDKNKSSSNDILLVPHLSNHIF 354 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVV 343 R T + + + G + Y + + I+ + Sbjct: 355 RHTFTTRLNEQNINTKAMQSILGHSDISTTMDIYVDATEDFK--IEQMGEFEKAM 407 >gi|89092929|ref|ZP_01165881.1| site-specific recombinase [Oceanospirillum sp. MED92] gi|89082954|gb|EAR62174.1| site-specific recombinase [Oceanospirillum sp. MED92] Length = 323 Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 43/317 (13%), Positives = 92/317 (29%), Gaps = 58/317 (18%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRK 127 I R+ + + + ++ + IR +K+ I +E R+ Sbjct: 3 SQFIQSLREHIRARNYSKRTEKTYVHWVLDFIRFHNRIHPQKLGVPEIVRYLEYLAVKRQ 62 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +PS+ L ++ L+K ++ ++ S +R + + T+ +++ F Sbjct: 63 VSPSTQRTALNALVYLYKHYFGRDE-SLLQLGSFKRATKPKKIPTVLTQHEIR--LIFQH 119 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL------------------------------ 217 L + + SGLR ++CR ++ + Sbjct: 120 LQGDYLLCAKLMYGSGLRLMEACRLRIKDIDLDRLSIHIFEGKGKKQRITTLSEFCVSEL 179 Query: 218 -QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND---------------- 260 + + + L+ F Sbjct: 180 KNQIAHARLCWQEDKLCHDWGGCYLPPALSRKYPNAPFEFSWQYLLPTKKRLVDERNDNA 239 Query: 261 --KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTV 316 + ++ FK K+G+ K + H +R AT + GA + G V Sbjct: 240 IRRHHLHERSMQREFKRAVLKSGIAKQATCHSLRHSFATHLLERGADIRTVQEQLGHSDV 299 Query: 317 DQAETYTKGADRIRLGI 333 E YT +R + Sbjct: 300 RTTEIYTHVLNRGGRAV 316 >gi|125973642|ref|YP_001037552.1| phage integrase [Clostridium thermocellum ATCC 27405] gi|125713867|gb|ABN52359.1| phage integrase [Clostridium thermocellum ATCC 27405] Length = 301 Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 32/273 (11%), Positives = 78/273 (28%), Gaps = 24/273 (8%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-----DFDYRKITTKHIRSGVESRKHT 129 + E+ + ++ ++ + + DFD IT IR + T Sbjct: 14 LDEFSAYLMSIDKSDSTIKTYIEHIQAFAKWFEETNCIDFDPAVITEIDIRDMRSYLQGT 73 Query: 130 P----SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-RPWTKEDMQQFKS 184 ++ L S++ F + ++Y+ NP ++ + K ++ I + ++ + + Sbjct: 74 RHLKETTINLRLASLKCYFSFLESEKYIKHNPARNIRKIKLQSPNIAKSLDEQTYRALRR 133 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDS-----CRAGVQHLQNNIFSIKTQKTGTIITVELPD 239 G F +++ + K + + L Sbjct: 134 HVYRGGNKAHIAMFEIFTRCGVRNFELINIRLTDFDISDRKGTLKIVGKLNKVRYIPLHK 193 Query: 240 GFMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV-NKSAHGVRK 291 + ++ D + FK + G+ + + H R Sbjct: 194 DVRDAINNWMEIRKNIKTEYDNLFISERKTPYTRSGIWKIFKKYCEQIGITDVTIHSFRH 253 Query: 292 FSATISADAGATAHELMATYGWKTV-DQAETYT 323 + G + G + A+ YT Sbjct: 254 YFCRTLLKNGVDISVVAKLAGHSSGFVTAQVYT 286 >gi|288927178|ref|ZP_06421058.1| phage-related integrase [Prevotella buccae D17] gi|315608604|ref|ZP_07883587.1| possible tyrosine recombinase [Prevotella buccae ATCC 33574] gi|288336047|gb|EFC74448.1| phage-related integrase [Prevotella buccae D17] gi|315249707|gb|EFU29713.1| possible tyrosine recombinase [Prevotella buccae ATCC 33574] Length = 342 Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 35/303 (11%), Positives = 89/303 (29%), Gaps = 41/303 (13%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSG 122 L+ +EY + ++ N+ S+ + F + + K++ Sbjct: 10 LRGFFTEYLSAE--RGVSSNTLRSYGTAFASYLDFMRVKREVDAEKLTLEHMGRKNVLDY 67 Query: 123 VESRKH----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCL---SVERPKRKTEGIRPWT 175 ++ + + S+ Q L ++ ++ ++ + V+ K + T Sbjct: 68 LDWLQTDKSSSVSTRNQRLAAIHAFCRYMQYEDVTRLYQWQEILGVKMKKAIKGTMNYLT 127 Query: 176 KEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKT 229 + +++ + G + L +G R + + + K Sbjct: 128 MDAVKELLAHIPQTTMRGRRDLAMLSLLYETGARVQELIDLRPVDVCLSKPYYVTLFGKG 187 Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM---------NATQFSIWFKAKATKA 280 V + D + +L + +++ + + K AT A Sbjct: 188 NKKRLVPIQDAQVSILRKYMEENHLLELRMNQRPLFQNGRGGKLTGAGITYILKNYATMA 247 Query: 281 --------GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRL 331 S H +R A AG + G ++ E Y + + + R Sbjct: 248 RTASENLIPEKISPHCLRHSKAMHLLQAGVNLVYIRDILGHVSIQTTEVYARADSKQKRE 307 Query: 332 GIK 334 ++ Sbjct: 308 ALE 310 >gi|114331357|ref|YP_747579.1| integron integrase [Nitrosomonas eutropha C91] gi|114308371|gb|ABI59614.1| integron integrase [Nitrosomonas eutropha C91] Length = 329 Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 40/317 (12%), Positives = 84/317 (26%), Gaps = 52/317 (16%) Query: 62 NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121 P T L+ + R ++ + + + + + I +++ + + Sbjct: 3 KMPPSHAPTSPKLLDQLRDKLRLKHYSIRTEVQYVQWVRRFILFHDKRHPQEMGAGEVEA 62 Query: 122 GVESRKHTPS-SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + + +A ++ L + + +V R KR T ++Q Sbjct: 63 FLTHLAVSGRVAASTQNQALSALLFLYREVLEIDLPWLDNVVRAKRPARLPVVLTHNEIQ 122 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVELP 238 + L L +G+R + R V+ + I + K LP Sbjct: 123 AVLGRMT--GAHGLMARLLYGTGMRLMECVRLRVKDVDFERAEILVRDGKGAKDRVTMLP 180 Query: 239 DGFMKLLAMTPIGKETFFINN--------------------------------------- 259 + +L + + ++ Sbjct: 181 QSLIPVLNEHIRHRRLLYEDDLAKDMAAVYLPDALERKYPKAATDWIWQYIFVAKSYSVD 240 Query: 260 ------DKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATY 311 + M+ K AGV K + H +R AT AG + Sbjct: 241 PRSGVERRHHMDEKLLQRAMKKAVLAAGVTKPATPHTLRHSFATHLLQAGYDIRTVQELL 300 Query: 312 GWKTVDQAETYTKGADR 328 G V YT ++ Sbjct: 301 GHSDVATTMIYTHVLNK 317 >gi|269965093|ref|ZP_06179258.1| tyrosine recombinase XerC [Vibrio alginolyticus 40B] gi|269830396|gb|EEZ84621.1| tyrosine recombinase XerC [Vibrio alginolyticus 40B] Length = 229 Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 31/212 (14%), Positives = 70/212 (33%), Gaps = 15/212 (7%) Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---Q 191 L+S+R F + + + ++ NP V P++K + +++ Q + + Sbjct: 3 TRLSSLRSFFDFLILRGEMSANPAKGVSAPRKKRPLPKNLDVDEVSQLLEVNEDDPLAVR 62 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPI 250 R E + +GLR ++ V+ +Q ++ V + + Sbjct: 63 DRAMMELMYGAGLRLAELVGVDVRDVQLRSGELRVIGKGDKERKVPFSGMATEWVGKWLR 122 Query: 251 GK--------ETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300 + F++ +++ K V + S H +R AT ++ Sbjct: 123 VRGDLAAPGEPALFVSKLGTRISHRSVQKRMAEWGQKQSVASHISPHKLRHSFATHMLES 182 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLG 332 + G + + + YT D L Sbjct: 183 SNNLRAVQELLGHENISTTQIYTH-LDFQHLA 213 >gi|258624140|ref|ZP_05719090.1| Integrase [Vibrio mimicus VM603] gi|258583571|gb|EEW08370.1| Integrase [Vibrio mimicus VM603] Length = 350 Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 39/281 (13%), Positives = 93/281 (33%), Gaps = 31/281 (11%) Query: 88 AVNSRISFESYFDQIIRKSG-----DFDYRKITTKHIRSGVESRKHT---PSSAIQFLTS 139 + SR + S+ + + + G D + + HI + +E P++ +L++ Sbjct: 67 SKRSRQTMSSFLNIVAKMIGFQNLRDCAWSSMRRHHILAVLEMLGDAGKAPATINTYLSA 126 Query: 140 MRVLFKWAVRQEYVAINPCLSVER---------PKRKTEGIRPWTKEDMQQFKSFWSEGS 190 ++ + A + + + +++ PK + ++G Sbjct: 127 LKGVALEAWTMKQIDTDSFQHIKQVRSVRGSRLPKGRALERHEIRSLFFTCESDSSAKGL 186 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGV-QHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249 + LL GLR S+ + + + K +P G K L Sbjct: 187 RDAAILGVLLGCGLRRSEIVALDMGSMIHKDRALKVLGKGNKERMAYVPGGAWKRLDKWV 246 Query: 250 -----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATIS 297 + F + ++M+ + + +AG+ K + H +R+ A+ Sbjct: 247 EEVRGTHEGPLFPRIRRFDDVTGERMSDQAIYHILETRRVEAGLEKFAPHDLRRTFASSM 306 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSR 337 D G + G ++ + Y + D R++ + Sbjct: 307 LDNGEDIVTVKDAMGHSSIATTQKYDRRGDERLKRASQRLD 347 >gi|325982077|ref|YP_004294479.1| hypothetical protein NAL212_1430 [Nitrosomonas sp. AL212] gi|325531596|gb|ADZ26317.1| Protein of unknown function DUF3596 [Nitrosomonas sp. AL212] Length = 361 Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 51/356 (14%), Positives = 101/356 (28%), Gaps = 43/356 (12%) Query: 15 RTRHGKIIYYFRKGHGR-RIRLPYPHESTFIPAYMSALTGST-----------------P 56 R F R R +P P T L Sbjct: 9 TIRGNSAQISFTYQGVRCRESIPIPPTKTAQKELALKLQSIKYEIKTGTFDYNRHFPYSK 68 Query: 57 KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKIT 115 K + R T+K + + + L +++ + S +I G+ ++T Sbjct: 69 KAKEFRKNRPDLYTIKEALISWLQRNQAK-LQLSTLQDYNSAIYHHLIPTFGNLTISELT 127 Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 ++ + + LT +R +F+ E + NP V+ KT P+T Sbjct: 128 ASKVKEWLSELPCSNKRKSNILTPLRQMFEELYLDEIIDKNPLSRVKNLPNKTREPEPFT 187 Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--- 232 +E++ + + Q + +F YSGLR S+ ++++ I ++ Sbjct: 188 QEEIIKILN--ELTGQAKNLIQFAFYSGLRTSELIALCWKNVEFEQNRIFIKQAHVRGQL 245 Query: 233 ---------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI-------WFKAK 276 V L + L + + Sbjct: 246 KDTKTKSGKREVTLQPQAKEALLNQQAFTGKQNQIVFHNPKTKQPWKNDQPIRKNVWIPA 305 Query: 277 ATKAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQ-AETYTKGADRIR 330 KAG+ + R A++ G + G K + Y + + + Sbjct: 306 LKKAGIKYRNPYQTRHTFASMLLSRGEKLLWVAQQMGHKDWGMIIKVYGRWIPQSK 361 >gi|256839225|ref|ZP_05544735.1| integrase [Parabacteroides sp. D13] gi|256740144|gb|EEU53468.1| integrase [Parabacteroides sp. D13] Length = 310 Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 89/301 (29%), Gaps = 27/301 (8%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVE---S 125 L + Y +S S++ + +R G Y +I + + + Sbjct: 6 LAEGMRMYIARLREQG-RYSSAKSYQDALNSFLRFCGQEVIPYTRIDREMLLRYQDYLRD 64 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 R+ + ++ ++ +R ++ A+ + L + + + Sbjct: 65 RECSWNTVSTYMRRIRRVYGLAMENGEAPFSRYLFKGIFMGVKSKQKKALPMESLRLLMT 124 Query: 186 WSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 R L+ G+ D ++N + QKTGT + VE+ Sbjct: 125 APLDDSGLRKTQRALCLMFLFCGMAFVDFAHLKKSDIRNGVLRYNRQKTGTPMLVEIQPV 184 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQ--------------FSIWFKAKATKAGVN--K 284 +LLA F+ K A GV Sbjct: 185 AKELLAALMTDTLRDSPYLFTFLSGTKTGEEAFREYTSALADFNSSLKELANACGVTEMV 244 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 +++ +R AT + G + G +++ + Y K ++ N S+ + Sbjct: 245 TSYSIRHSFATTLKEQGVPIEMISELLGHQSIKTTQIYLKSFSLDKMSAVNKACFESIYN 304 Query: 345 S 345 + Sbjct: 305 N 305 >gi|56698711|ref|YP_166466.1| phage integrase family site specific recombinase [Ruegeria pomeroyi DSS-3] gi|56680448|gb|AAV97114.1| site-specific recombinase, phage integrase family [Ruegeria pomeroyi DSS-3] Length = 375 Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 43/321 (13%), Positives = 95/321 (29%), Gaps = 17/321 (5%) Query: 29 HGRRIRLPYPHESTFIPAYMSA--LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS 86 RR L + + A A L + E +P + + + K + Sbjct: 49 KRRRKTLGRYPDLSLADARKQAKQLLSANAMGEGQVTPHAPVVAFEEAKARFLKDCEGRN 108 Query: 87 LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKW 146 + + ++ GD R++ + + V TPS ++R + W Sbjct: 109 -KPRTVADYRRLLNRHFNFKGD--VREVYRQQVMRVVSGLSATPSEQSHAYVAIRTMMNW 165 Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL-YSGLR 205 VR V + +++ + + R +++++++ E LL +G R Sbjct: 166 CVRHGLVDHSVVPPMKQKTSERD--RVLSEDELRKVYLRAQETPFAFGPIVQLLILTGQR 223 Query: 206 CSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN 265 ++ + + + + P + + + + Sbjct: 224 RTEIGQMRRSWISHGEVAFPKGFAKNKREHRFPLSPLSQQVVADLPNTGDLLFPAATDFE 283 Query: 266 ATQFSIWFKAKATKAGV----NKSAHGVRKFSATISADAGATAHELMATYGWKTVD---Q 318 + + K G+ + H +R+ ATI A G H + Sbjct: 284 KAFTTWAWHKKRFDEGLEAVEPYTLHDLRRTFATIHAKIGTPIHVTEKLLNHVSGTISGV 343 Query: 319 AETYTKG--ADRIRLGIKNSR 337 A Y + AD +R Sbjct: 344 AAVYNRHSYADEMRHAASQFD 364 >gi|46198918|ref|YP_004585.1| DNA integration/recombination/invertion protein [Thermus thermophilus HB27] gi|46196542|gb|AAS80958.1| DNA integration/recombination/invertion protein [Thermus thermophilus HB27] Length = 313 Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 42/275 (15%), Positives = 92/275 (33%), Gaps = 20/275 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144 + + R + + +R+ + + P FL ++R + Sbjct: 42 RGYSPRGVRRYLQDLAFWFRFLEAEGLPP-SPEAVRALLLRERWAPRRVQGFLAALRSYY 100 Query: 145 KWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF---EFLL 200 ++ + A +P + RPK E++++F + E + L FL Sbjct: 101 RYLREVKGEAASDPTEGIGRPKAGRRLPLHPGPEELKRFLEAFREEKEAALLEALARFLY 160 Query: 201 YSGLRCSDSCRAGVQHLQ----NNIFSIKTQKTGTIITVELPDGFMKLL------AMTPI 250 +GLR S++ +++ + + K V L ++L Sbjct: 161 GTGLRISEALSLKGRNVVLEGGSPVAVRVVGKGNKERLVPLSKTAREVLEALGRLQGNVN 220 Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHEL 307 +A F+ A +AG++ + H +R AT+ + G + Sbjct: 221 IFTFSQGRRKGHVPSARWVEAKFREAALRAGLDPRRFTPHKLRHAYATLLVERGVELDAV 280 Query: 308 MATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342 G +++ + Y A R RL + + R+ + Sbjct: 281 KDLLGHESIATTQIYLH-ASRERL-REAASRLPEL 313 >gi|331656870|ref|ZP_08357832.1| integrase for prophage [Escherichia coli TA206] gi|331055118|gb|EGI27127.1| integrase for prophage [Escherichia coli TA206] Length = 350 Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 44/325 (13%), Positives = 86/325 (26%), Gaps = 30/325 (9%) Query: 19 GKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76 GK I Y +GRR+R A+ T + ++ TLK ++ Sbjct: 9 GKWICECYPAGRNGRRVR-KQFATKGEALAFERHTMEETEAKPWLGESVD-RRTLKDVVE 66 Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---------- 126 + K H SL + ++ ++ G+ +T+K + R Sbjct: 67 LWFK-LHGKSLTAG-QHVYDKLL-LMVDALGNPIATDLTSKMFAHYRDKRLTGEIYFSEK 123 Query: 127 ---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 +P + + + +F R + L R E W + Sbjct: 124 WKKGASPVTVNLEQSYLSSVFSELSRLGEWSYPNPLENMRKFTIAEKEMAWLTHEQIVEL 183 Query: 184 SFWSEGSQPRLAFE--FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 + P LA L +G R ++ + + K ++ + Sbjct: 184 LADCKRQDPILALVVKICLSTGARWREAINLTRSQVTKYRITFVRTKGKKNRSIPISKEL 243 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAG 301 + + F + + + H +R A +G Sbjct: 244 YEEIMALDGFNFFKDCYFQ--------FLSVMEKTSIVLPRGQLTHVLRHTFAAHFMMSG 295 Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326 L G + Y A Sbjct: 296 GNILALQKILGHHDIKMTMRYAHLA 320 >gi|260593040|ref|ZP_05858498.1| integrase [Prevotella veroralis F0319] gi|260535012|gb|EEX17629.1| integrase [Prevotella veroralis F0319] Length = 438 Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 37/294 (12%), Positives = 92/294 (31%), Gaps = 23/294 (7%) Query: 70 TLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIR 120 TL L ++ S++V + + D ++T I Sbjct: 139 TLMQLFEKHNTDIQEQVGVSVSVATLQKYNVCKKHFAAFLNEKYKRCDIRLSELTFTVIH 198 Query: 121 SGVESRKHT----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + T P++ + + + + + + + +P ++ + T Sbjct: 199 DFDIYLRTTAGQNPNTVTKTMKTFKTITILGRKMGALNHDPFINH-HFHLEPVNRGFLTD 257 Query: 177 EDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233 E++ + + ++ R F F ++GL D ++ Sbjct: 258 EEIMKIANKDFGINRLELVRDIFIFSCFTGLAYIDVSNLTPDNIVTLDDKQWIMTKRQKT 317 Query: 234 TVELPDGFMKL--LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 +VE + + +T G +T+ + + + + K A G+ K + H Sbjct: 318 SVETNVLLLDIPKRIITKYGHKTYRDGKLLPVLTNQKINAYLKEIADLCGIKKRLTFHLA 377 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI--RLGIKNSRRISS 341 R AT+S G + G + + Y + ++ + + ++S Sbjct: 378 RHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKIEHDMEELAGKLSK 431 >gi|300860289|ref|ZP_07106376.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TUSoD Ef11] gi|300849328|gb|EFK77078.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TUSoD Ef11] gi|323481177|gb|ADX80616.1| phage integrase family protein [Enterococcus faecalis 62] Length = 382 Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 53/375 (14%), Positives = 119/375 (31%), Gaps = 43/375 (11%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP---- 64 +V + G + +R + ++ + +A + + + Sbjct: 11 KYVFSYSNKKG-TFWGYRYPYYNSLKHRKEASKRGFESERAANKALLKIQYDLETQNTSF 69 Query: 65 -RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKI-----TTK 117 K T+ I + A + +V+++ + ES I G+ + + Sbjct: 70 IENKQLTIDEWIKVWIPYAQ-DNWSVSTKQNIESAIKFHISPLIGNQKLSSLNKITYKRE 128 Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 I + K+T S+ + + + AV + + N + KE Sbjct: 129 FIDKLRQENKYTESTIQTWHKIVMRMINAAVHNQIIPSNTLTGFKF-DLSNNVRSFSKKE 187 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI------------K 225 + +E Q ++ F LL SG+R + + N K Sbjct: 188 LQRFIAVLENEDIQTQVIFLTLLKSGMRKGELMGLRWSDIDLNEKYFDINSTRGDYGENK 247 Query: 226 TQKTGTIITVELPDGFMKLLAMTPIG--------------KETFFINNDKQKMNATQFSI 271 + +I V + + L+ K+ F +++ + ++ + Sbjct: 248 PKTKTSIRKVYFDNSLLTLIKKYKNHEKERLFREGIILSDKDYFILSSRNLPIKQSRITY 307 Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA-DR 328 F+ KA V N + HG+R AT +AGA + G K ++ + Y+ + Sbjct: 308 MFRLLCEKAEVQNITVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVYSDVLKEE 367 Query: 329 IRLGIKNSRRISSVV 343 + ++ + Sbjct: 368 EKETADMMDKLIENL 382 >gi|326778043|ref|ZP_08237308.1| integrase family protein [Streptomyces cf. griseus XylebKG-1] gi|326658376|gb|EGE43222.1| integrase family protein [Streptomyces cf. griseus XylebKG-1] Length = 377 Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 49/367 (13%), Positives = 101/367 (27%), Gaps = 35/367 (9%) Query: 1 MTPSLR-LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE 59 M + F + G+ + G +T A + Sbjct: 1 MAAKRKSRRAFGRIRKLPSGRFQARYPGPDGVLRAADQTFPTTTDADRWLARKRIEMEEG 60 Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKH 118 P + TT++ + + + L ++ S+ S + I+ GD + + Sbjct: 61 RWVDPAEGKTTVRDWSARWLTAVSPQ-LKHKTQASYRSLINSLIVPALGDRELSSLRPIT 119 Query: 119 IRSGVESRKHTPSSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 I V + K SA + + + + AV E + PC V+ P+ T Sbjct: 120 IVEWVGAMKTRGLSASRIRQAYRVLSQIMRAAVDNEMIGQTPCRGVKLPRMPQTEPHILT 179 Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--- 232 ++ + S L L Y+GLR ++ + + + + Sbjct: 180 --PLEASRIVGSATKPHDLLISLLAYAGLRVGEAFALRRADIDVSGGLVLVDENLAEANG 237 Query: 233 --ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF-----------SIWFKA---- 275 + ++L + P + + ++ Sbjct: 238 TLVFDTPKSHQKRVLRIGPSLAARIGRHLETLPGGEDALLFVTPGGKPLRYNQWRKAYFD 297 Query: 276 -KATKAGV-NKSAHGVRKFSATISADA-GATAHELMATYGWKTVD-QAETYTK-GADRIR 330 AG+ + + H +R T AD G G Y + A R Sbjct: 298 PAVVAAGLTDVTPHDLRASHGTWVADRYGV--MTAAHRLGHSNASVTTRHYARPVAGRDD 355 Query: 331 LGIKNSR 337 + + Sbjct: 356 QVAEAAD 362 >gi|304384214|ref|ZP_07366629.1| possible tyrosine type site-specific recombinase [Prevotella marshii DSM 16973] gi|325270616|ref|ZP_08137214.1| tyrosine type site-specific recombinase [Prevotella multiformis DSM 16608] gi|304334715|gb|EFM00993.1| possible tyrosine type site-specific recombinase [Prevotella marshii DSM 16973] gi|324987011|gb|EGC18996.1| tyrosine type site-specific recombinase [Prevotella multiformis DSM 16608] Length = 387 Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 42/326 (12%), Positives = 101/326 (30%), Gaps = 36/326 (11%) Query: 57 KREYINSPRKKPTTLKWLIS---EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113 +E + TL L EY++ +L+ + +F+ + + D Sbjct: 55 LKERYMQQSRPMPTLAELYQSVCEYKEELQGRTLSKATVRAFKDSYKSFVHFLQVRDRAD 114 Query: 114 ITTKHIRS---------GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL--SVE 162 + + + SS L + + + A+++ YV +P +E Sbjct: 115 CMPTEVDKTLLEDYRLFMLRDLGNKESSVGNRLRHLHQVIRKALQERYVREDPFELIDIE 174 Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222 P + + + + ++ S + RL F ++GL SD + + + Sbjct: 175 TPTYERNALTADDLQKLLAYRPHRSVDNHCRLIFLLGCFTGLAFSDLKKLRMDDVYTFGD 234 Query: 223 SIKTQKTGTI----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278 + ++ + + + + + + F+ + Sbjct: 235 GRRYISLCRTKTQNRSIVPLLPIAEKILAIVSPGRREGLFFREFP-SNSNFNRTIQEICI 293 Query: 279 KAGVN----KSAHGVRKFSAT-ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 KAG+ ++H R AT I + G + G + + E Y + + ++ Sbjct: 294 KAGLPPHTQATSHTARHTFATTICLENGLPIETVSKMLGHRFISTTEIYARVT-KSKIAK 352 Query: 334 K-----------NSRRISSVVDSDDP 348 + R+ + S P Sbjct: 353 EMQPLMGSEHTRVLRKALRLCPSRTP 378 >gi|227431814|ref|ZP_03913841.1| bacteriophage integrase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352497|gb|EEJ42696.1| bacteriophage integrase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 355 Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 48/338 (14%), Positives = 94/338 (27%), Gaps = 25/338 (7%) Query: 16 TRHGKIIYYFRKG-HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 R G + T A A+ K S R + Sbjct: 6 KRGTNWTASVSIKVDGSFKKKTKSGFKTKREATNWAIEMENKKINDTLSKRDGII--AEM 63 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSS 132 E+ L ++ + + ++ D +I + + V H SS Sbjct: 64 FDEWYAIFKEPLLETQTKGWYRLVSKILRKEWPDRKLSEINSSDFQKMVNEYGKNHVRSS 123 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 + K+AV ++++ + +++ K+ + + + + E Sbjct: 124 VAHVKNILSSFIKYAVDEDFINKDFSRNIKVFSSKSSKDKDLKFLENDELEMLIKEIENS 183 Query: 193 RLAFEFLL----YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--------------IT 234 ++ YSG R S+ +I K+ Sbjct: 184 AAVTSHMILLAIYSGARYSEVAALTRNDFNFTNNTININKSWQANDQSFKATKTKTSNRI 243 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293 ++LP FMKL+ GK+ F + + + K + HG+R Sbjct: 244 IDLPPVFMKLVRQWTFGKKYAFESITGLPPTNAAVNKQLRRYLKKNDSKLITFHGLRHTH 303 Query: 294 ATISADAGATAHELMATYGWKTVD-QAETYTKGADRIR 330 A+ + G V+ TY D+ R Sbjct: 304 ASFLLSQDIAIQYVSERLGHADVNITLSTYAHLLDKKR 341 >gi|188532702|ref|YP_001906499.1| Bacteriophage 186 integrase [Erwinia tasmaniensis Et1/99] gi|188027744|emb|CAO95599.1| Bacteriophage 186 integrase [Erwinia tasmaniensis Et1/99] Length = 342 Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 52/317 (16%), Positives = 87/317 (27%), Gaps = 40/317 (12%) Query: 29 HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA 88 G+RIR F + + R+ TLK L+ + SAH +L Sbjct: 22 KGKRIR------KKFATKGEALAFEQFTVQNPWQEEREDRRTLKELVDAWY-SAHGITLK 74 Query: 89 VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR------------KHTPSSAIQF 136 R + G+ R + E R + +P + Sbjct: 75 DGIRR--QQAMHHAFGCMGEPLARDFDAQMFSRYRERRLKGEYARSNRVKEVSPRTLNLE 132 Query: 137 LTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL- 194 L R +F R E+ NP ++ + + T + + P L Sbjct: 133 LAYFRAVFNELNRLGEWKGENPLKNMRPFRTAEMEMAWLTHDQIALLLDECKRHDHPDLE 192 Query: 195 -AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253 L +G R S++ HL + K TV + + L G+ Sbjct: 193 TVVRICLATGARWSEAESLKKSHLAKYKITYTNTKGRKNRTVPISKELYESLPDDKKGRL 252 Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVNKSA----HGVRKFSATISADAGATAHELMA 309 F++ + G+ A H +R A+ G L Sbjct: 253 FSDCYG------------AFRSALERTGIELPAGQLTHVLRHTFASHFMMNGGNILVLQR 300 Query: 310 TYGWKTVDQAETYTKGA 326 G + Y A Sbjct: 301 VLGHTDIKMTMRYAHFA 317 >gi|322410893|gb|EFY01801.1| Integrase [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 381 Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 46/382 (12%), Positives = 108/382 (28%), Gaps = 51/382 (13%) Query: 11 VTKERTRHGKIIYYFRKG------HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS- 63 +T+ + ++G I+Y G+R++ T A ++ Sbjct: 3 ITEHKKKNGTIVYRASIYLGIDQMTGKRVKTSITG-RTQTEVKQKAKHTQFDFLSNGSTI 61 Query: 64 -PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRS 121 + + L + KS + + S + I+ G+ KIT ++ Sbjct: 62 HKEAQIRNYQELAELWLKSYQLT-VKPQTYESTKLLLKNHILPVFGNMKLEKITPSFVQQ 120 Query: 122 GVESRKHT------PSSAIQFL---TSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGI 171 HT S + + + L + R+ + S +R K Sbjct: 121 FANKLAHTLVNFKVACSINRRILQYAVLLQLIPYNPAREIIIPKKQKKSADRVKFINPQN 180 Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 + M+ + + + FLL +G R ++ + ++ KT Sbjct: 181 LKALLDYMETLAPTKYQYYYDNVLYRFLLATGCRFGEAVALEWSDIDLEAGTVSISKTYN 240 Query: 232 I--------------------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMN 265 + + L + + F + + Sbjct: 241 RQINQISTPKTKSGKRIISIDNKLVLLLKQYRNRQRLIFLEIGARAPKVIFASPTLTYAS 300 Query: 266 ATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYT 323 + S + + + + + H R A++ +AG + EL G + +TY Sbjct: 301 SDVRSKALAHRCKEVDIPRFTFHAFRHTHASLLLNAGISYKELQHRLGHSNIKMTLDTYG 360 Query: 324 KGADRIRLGIKNSRRISSVVDS 345 + + +++ Sbjct: 361 HISKEKE--KEAVSYFEKAINN 380 >gi|303242647|ref|ZP_07329121.1| integrase family protein [Acetivibrio cellulolyticus CD2] gi|302589786|gb|EFL59560.1| integrase family protein [Acetivibrio cellulolyticus CD2] Length = 340 Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 39/307 (12%), Positives = 83/307 (27%), Gaps = 41/307 (13%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD--------YRKITTKHIRSG 122 L ++Y + + S S+ F + T + + Sbjct: 10 LNKYFTQYM--PNERGNSPQSIDSYRYAFILYLEYMESVKKISAERIVLSDFTRETVTGY 67 Query: 123 VESRK----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + ++PS+ Q L +++ + + ++ + K + + Sbjct: 68 LNWLGASRENSPSTRNQRLAALKGFVHYLKYEFPDYLDEYQRILGIPLKKTQRKEISYMK 127 Query: 179 MQ-------QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--- 228 Q + G + L +G+R ++ V+ + Sbjct: 128 TDGVNLLVEQIDVTRTNGLWDYVILLILYTTGIRVTELINVRVKDISLTEPYTIRIHGKG 187 Query: 229 ---TGTIITVELPDGFMKLLAMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKA 280 + + L +ET F N+ K + K KA Sbjct: 188 NKGRYVPLMRTAVPHIKRYLETMGYANEARYEETLFKNHMKTPFTRQGINYVLKKYGIKA 247 Query: 281 GV--------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRL 331 + SAH +R A +G + G +V E Y + A R Sbjct: 248 KRINSELIPNDLSAHKMRHTMAMELVTSGVDLMYIRDLLGHSSVVTTEIYARTDAKLKRK 307 Query: 332 GIKNSRR 338 I+ + + Sbjct: 308 AIEAASK 314 >gi|227522679|ref|ZP_03952728.1| possible bacteriophage integrase [Lactobacillus hilgardii ATCC 8290] gi|227090127|gb|EEI25439.1| possible bacteriophage integrase [Lactobacillus hilgardii ATCC 8290] Length = 374 Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 51/373 (13%), Positives = 106/373 (28%), Gaps = 47/373 (12%) Query: 14 ERTRHGKIIYYF---RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 + +G I G RRI + + + K + T Sbjct: 5 YKRANGNWIARVSYKENGEYRRINQGGFRTRKLAQTWATEVENRRNKGNVLAYSE---TF 61 Query: 71 LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--K 127 L +++ ++ LA N+ + + S + ++IT + + Sbjct: 62 LPDFFNKWYQTFKSPKGLADNTVQIYAFTKHVLANSSLNMPLKEITFTDYQQFFNQLGKR 121 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-------RPKRKTEGIRPWTKEDMQ 180 ++ SS Q T +R + A++ + N VE K + K Sbjct: 122 YSVSSLRQVNTIIRACVRKALQMRQIPYNFTDDVEISGKASAPLSSKYLEVDDIKKLTDY 181 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--GTIITVEL- 237 + ++A F L +G R ++ + +I KT T E Sbjct: 182 CVANIQELTDVSKMAILFSLLTGARFAEVAGMTWDCVNFREKTITINKTIGMQSRTFEKT 241 Query: 238 -----------------PDGFMKLLAMTPI-------GKETFFINNDKQKMNATQFSIWF 273 KL++ + F + + + + Sbjct: 242 KNSSSIRTLSIDLTLLTMLQKWKLISDHHMLKVGFKNPMNLVFYTPFHRPLYNSMVNNDL 301 Query: 274 KAKATK-AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK--GADRI 329 K K S HG+R A+ G + + G K++ + Y A Sbjct: 302 KKICRKNLSREISFHGLRHSHASYLIAKGISVQYVSKRLGHKSIGTTQNVYIHFLKAAET 361 Query: 330 RLGIKNSRRISSV 342 + + + ++ + Sbjct: 362 KENEQAQKMLNEL 374 >gi|289675311|ref|ZP_06496201.1| site-specific recombinase, phage integrase family protein [Pseudomonas syringae pv. syringae FF5] Length = 312 Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 57/315 (18%), Positives = 112/315 (35%), Gaps = 30/315 (9%) Query: 17 RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76 +HG Y+ G+ RL + AY + G + + LI Sbjct: 4 KHG---AYYLVRKGKWERLGSDF-QEALLAYAKIVGGKSNGGMSL------------LID 47 Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136 E + L+ N+ +E+ ++ +F+ R++ +H+ + TP+ A + Sbjct: 48 EALDAMR-RRLSENTIKQYEAASVRLKTYLEEFEPRQVLPRHVAALKLHMSDTPNMANRV 106 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196 ++ +R++F +A+ ++ V NPC + R K E + S + + Sbjct: 107 ISFLRMVFAYALERQIVDSNPCTGIRRHAEKKRDRYISDAEFAAICAASSEYMS---VIW 163 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET-- 254 E +G R SD + + + + + QKTG + V + LL Sbjct: 164 EMCFLTGQRISDVLSIKLSDISDVGIAFEQQKTGAKLIVGMSPDLKALLDRVNALPRKVR 223 Query: 255 ----FFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMA 309 F + + ++ + F+A AGV + H +R S T + G Sbjct: 224 GATLFCARSGGKPVSYDTCKMGFRAACKAAGVKGATIHDLRAKSLTDTDRQGNN---AQM 280 Query: 310 TYGWKTVDQAETYTK 324 G + Y + Sbjct: 281 LGGHTDAKMTKRYLR 295 >gi|120537151|ref|YP_957208.1| phage integrase family protein [Marinobacter aquaeolei VT8] gi|120326986|gb|ABM21293.1| phage integrase family protein [Marinobacter aquaeolei VT8] Length = 327 Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 32/300 (10%), Positives = 71/300 (23%), Gaps = 37/300 (12%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD--------YRKITTKHIRSG 122 ++ +Y + + ++ ++ + D + I + Sbjct: 13 VESFFRDYLQ--RLKGASTHTVRAYRDTLRLLFIYLADTKGCAVADLQISDLRVDAIAAF 70 Query: 123 VES----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT--- 175 + R + + ++R K +R + + K T Sbjct: 71 LTQLESVRANAVVTRNYRRAAIRSFCKHLIRVDLPHAEQYQRILALPAKKSRQPLATYLE 130 Query: 176 ----KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKT 229 + Q + G + FL +G R S++ L K Sbjct: 131 AEEVHAIIDQPDRHTALGQRDHGLLLFLYNTGARISEALAVRCADLHLTPPRQVRLHGKG 190 Query: 230 GTIITVELPDGFMKLLAM-----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-- 282 L + L F+N + + + + A Sbjct: 191 RKDRLCPLWRETTQALQCLPAVRNDTPGSFVFVNRQGEPLTRDGVAYLLRKYVADAIPTT 250 Query: 283 ------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY-TKGADRIRLGIKN 335 + H +R A +G + G +V Y T R ++ Sbjct: 251 PTLKRRKITPHVLRHSCAVALLQSGVDITVIRDYLGHASVATTSRYLTTNLQMKRAALEA 310 >gi|213972135|ref|ZP_03400225.1| SAM-like protein [Pseudomonas syringae pv. tomato T1] gi|302062047|ref|ZP_07253588.1| Phage integrase:Phage integrase, N-terminal SAM-like protein [Pseudomonas syringae pv. tomato K40] gi|302131887|ref|ZP_07257877.1| Phage integrase:Phage integrase, N-terminal SAM-like protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213923112|gb|EEB56717.1| SAM-like protein [Pseudomonas syringae pv. tomato T1] Length = 320 Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 37/271 (13%), Positives = 81/271 (29%), Gaps = 31/271 (11%) Query: 89 VNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRKHTP---SSAIQFLTSMRV 142 +R ++++ + G + +T H+ + +H ++ + L ++ Sbjct: 39 PRTRRAYQNDLEDFCGFVGLASADEFRVVTRSHVLAWRAQLEHRGLAGATIRRKLAALAS 98 Query: 143 LFKWAVRQEYV---AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLA 195 LF + + + + + + E G + R Sbjct: 99 LFDHLLESNAIAGGNPVHGVKRPKIESNEGKTPALGDHQAKALLEAPDETTLKGQRDRAL 158 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNN---IFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252 LLY GLR ++ V +Q+ K G + + + + Sbjct: 159 LAVLLYHGLRREEAALLQVSDIQDRRGIQHLKVHGKGGKVRYLPMHPVAAGRIHQYLESS 218 Query: 253 ETFFINNDKQ------------KMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATIS 297 + + A A A KAG+ HG+R +AT + Sbjct: 219 GHHLADRKVPLFIPLRGKLTGAGITANGIYTVVAAYAKKAGIEVDGLGVHGLRATAATNA 278 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADR 328 + A ++ A G + + Y + +R Sbjct: 279 LEHEADIAKVQAWLGHANISTTKIYDRRENR 309 >gi|139439113|ref|ZP_01772565.1| Hypothetical protein COLAER_01575 [Collinsella aerofaciens ATCC 25986] gi|133775460|gb|EBA39280.1| Hypothetical protein COLAER_01575 [Collinsella aerofaciens ATCC 25986] Length = 399 Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 43/376 (11%), Positives = 90/376 (23%), Gaps = 57/376 (15%) Query: 15 RTRHGKIIYY----FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 R G+ + GRRIR ++ A +S R Sbjct: 13 RGADGRWFARPYMGTDRVTGRRIRPYRSWDAELTREQAQAECDRWAATFDPSSARDSSKR 72 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSGVESR--- 126 L ++ Y L+ NS ++ S ++ G Y ++ + + Sbjct: 73 LSSMLETYISDP-VNGLSDNSVATYRSVVRTMVEPTIGRLPYDQLEPWDVSAAYRMLLAP 131 Query: 127 ----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT------- 175 +P + ++ ++ ++ + + + L V P + Sbjct: 132 RSGKGLSPKTLLKMHALLKGAYRSW--RPALGRDIMLDVPAPSPDPVEPFALSELDTDEL 189 Query: 176 ------KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229 + LA L +GLRC + C + + + + Sbjct: 190 SRALASAMSSRSASGANISRRTEALAVYLALNTGLRCGEICGLQRRDWRRALHDLHVVGQ 249 Query: 230 GTIITVELPDGFMK--------------------------LLAMTPIGKETFFINNDKQK 263 + K LA Sbjct: 250 AVEHPELHRQAYTKGRRVRNVALAPAVEAQLQRHLDWQDTWLARKGPTALVVTFGPAGAI 309 Query: 264 MNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-E 320 + + FK+ G+ + H +R A+ G + G +V + Sbjct: 310 ARPSTVTSRFKSLVRDLGLPEETVFHSLRHTHASWLLMNGFDMRTIQERLGHASVKTTLD 369 Query: 321 TYTKGADRIRLGIKNS 336 Y + Sbjct: 370 IYGSVMPGRDQAAAAA 385 >gi|288802660|ref|ZP_06408098.1| integrase [Prevotella melaninogenica D18] gi|299141691|ref|ZP_07034827.1| integrase [Prevotella oris C735] gi|288334810|gb|EFC73247.1| integrase [Prevotella melaninogenica D18] gi|298577027|gb|EFI48897.1| integrase [Prevotella oris C735] Length = 403 Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 33/258 (12%), Positives = 77/258 (29%), Gaps = 20/258 (7%) Query: 91 SRISFESY---FDQIIRKSG------DFDYRKITTKHIRSGVESRKHTPS----SAIQFL 137 ++ ++ + + D + ++T I K +AI+ L Sbjct: 104 TKANYRKFDICKRHFAKFLEEKYARTDLNIIELTPIVIHDFDVYLKTVVGQCFNTAIKTL 163 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RL 194 + + + + + +P L++ K K T E++ + R Sbjct: 164 KTFKTVIIFGRKAGVFNHDPFLNI-HFKTKRVDRGFLTDEEVDTIMHKEFATQRLVNVRD 222 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254 F F ++GL D ++ + + + E Sbjct: 223 IFLFSCFTGLAYVDVANLTPDNIITMDGKQWIVTARQKTDTLSHILLLDIPKIIIKKYEG 282 Query: 255 FFINNDKQKM-NATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATY 311 N + + + + + K A G+NK + H R AT+ G + Sbjct: 283 KAKNGRLIPILSNQRMNSYLKEIADVCGINKNLTFHMARHTFATMMLTKGVPVESVSKML 342 Query: 312 GWKTVDQAETYTKGADRI 329 G ++ + Y + ++ Sbjct: 343 GHTSITTTQLYARITNKK 360 >gi|254443000|ref|ZP_05056476.1| integron integrase subfamily, putative [Verrucomicrobiae bacterium DG1235] gi|198257308|gb|EDY81616.1| integron integrase subfamily, putative [Verrucomicrobiae bacterium DG1235] Length = 485 Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 44/332 (13%), Positives = 82/332 (24%), Gaps = 52/332 (15%) Query: 43 FIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI 102 F A + A + S + + E+ + ++ +S+ + Sbjct: 133 FREAVLHAEVVAKEIPSESVSAEHVSGEGEVWLEEFLCELRRRKYSYSTEVSYLQWIRAF 192 Query: 103 IRKSGDFDYRKITTKHIRSGVESRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161 G R+ +R ++ SA ++ + + V + Sbjct: 193 AVFLGSNALREFGRLDVRRFLDYLALERRVSASSQRQALNAVVFLYKQVFRVELGDFSDY 252 Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-- 219 R K KT K +M++ L + +GLR S+ CR V+ L Sbjct: 253 LRAKSKTNLPTVLGKGEMRRLLGEMKGN--RLLMAKLQYGTGLRVSELCRLRVKDLDFEL 310 Query: 220 ----------------------------NIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251 + S + + L Sbjct: 311 GKVLVVGGKGNKDRALPLPKKLAKELEQQLASAREVFEKDRSDEVAGVYLPEALERKFSK 370 Query: 252 KETFFINNDKQKMN-----------------ATQFSIWFKAKATKAGVNKSA--HGVRKF 292 T + + A+KA + K H +R Sbjct: 371 AGTDWKWFWVWPSRELGVDPRSDVLRRHHVLPRSYQAAISRAASKAEIQKRVSSHALRHS 430 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324 AT D+G L G K + + Y Sbjct: 431 FATHLLDSGINLRTLQELMGHKDIKTTQVYLH 462 >gi|320196994|gb|EFW71613.1| Phage integrase [Escherichia coli WV_060327] Length = 387 Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 51/378 (13%), Positives = 112/378 (29%), Gaps = 56/378 (14%) Query: 17 RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76 R+ + G+RI+ A T + Sbjct: 6 RNEIWYASYSLPGGKRIKESL-GTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEACL 64 Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS----- 131 + + S S +S + + + I+ I S V + + Sbjct: 65 RWLEEKADKK----SLDSDKSRIEFRLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWK 120 Query: 132 ------------------------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167 + + L ++ + + A +++ + ++ P + Sbjct: 121 QKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILR-AAERDWKWLEKAPVIKIPAVR 179 Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFS 223 + +R KE+ ++ E + +F L +GLR S+ Q + + Sbjct: 180 NKRVRWLEKEEAKRLIDECPE--PLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVN 237 Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI------------ 271 + K+ I V L D K+L + + K A S Sbjct: 238 PEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKT 297 Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 + + +AG+ + H +R A+ +G L GW++++ Y A Sbjct: 298 SWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNH- 356 Query: 331 LGIKNSRRISSVVDSDDP 348 +++R+I + + P Sbjct: 357 -LTEHARKIDDIFGDNVP 373 >gi|15672627|ref|NP_266801.1| integrase-recombinase [Lactococcus lactis subsp. lactis Il1403] gi|12723549|gb|AAK04743.1|AE006297_6 integrase-recombinase [Lactococcus lactis subsp. lactis Il1403] Length = 312 Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 36/302 (11%), Positives = 89/302 (29%), Gaps = 36/302 (11%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT- 129 + L+ EY G+ + + +E + D+ I +++ I + Sbjct: 4 FEQLVKEYLLELKLGNYSKKTMAVYEQHIDKFIDFYKKEICKEMDIYAINKMHYKLFISQ 63 Query: 130 -------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + L S + + + +R++ + +P S++ K + + + ++++ Sbjct: 64 LLDNSLRATYINAILKSNKAFYSYLIREQVLKTSPMDSIKLLKETKQALTTFNDDEVKAM 123 Query: 183 KSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 + W+ + + + L +G+R S+ L + K V + Sbjct: 124 LNVWNFNTYLNARNKCIIAVLADTGIRISELINIKDSDLTDQYIR-VLGKGDKWRVVPIS 182 Query: 239 DGFMKLLAMTPIGKETFFINNDKQK-------------MNATQFSIWFK----------A 275 + LL ++ F + Sbjct: 183 NELNYLLTKYKRLRDNHFNKIRNRNGKVRELDSELFLGNTGRSIKTITNIEVMITQTGLQ 242 Query: 276 KATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 +A V S H R + S + G + G + + Y + +L K Sbjct: 243 ANVRASVRCSPHQFRHYWTCKSLELGQDIFTISKLLGHTNLSTTQIYLQKLTNEQLISKA 302 Query: 336 SR 337 + Sbjct: 303 VK 304 >gi|325662731|ref|ZP_08151325.1| hypothetical protein HMPREF0490_02065 [Lachnospiraceae bacterium 4_1_37FAA] gi|325470968|gb|EGC74196.1| hypothetical protein HMPREF0490_02065 [Lachnospiraceae bacterium 4_1_37FAA] Length = 361 Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 37/333 (11%), Positives = 91/333 (27%), Gaps = 37/333 (11%) Query: 20 KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79 + Y G ++ + A + + + Y Sbjct: 15 RTYYKDWTGVRKQKTKRGFKRKCDAQEWERAF--------KLKENLSLDMYFEDFVDLYL 66 Query: 80 KSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR---------KHT 129 + N+ ++ + +I+ ++I IR + ++ Sbjct: 67 NDIKSR-IKYNTWLTKKHIVEKKILPYFSKKKLQEIKPSDIRQWQNTMMNYRNKQGEGYS 125 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQFKSFWSE 188 + + AV + N ++ WTKE+ +F ++ Sbjct: 126 QVYLKTIHNQLSAILNHAVNFYDLKSNAARKAGSMGKERTKEMLFWTKEEYMKFIEAVAD 185 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------------- 232 AFE L + G+R + +I+ K+ Sbjct: 186 KPISFYAFEILYWCGVRMGELLALTPADFDFQACTIRINKSYQRLEGKDIITDPKTVKSN 245 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRK 291 + +P+ + L N+ +++ + +GV + H +R Sbjct: 246 RMITMPEFLSEELESYIGMLYGLNENDRIFQISKSYLHHEMDRGVKLSGVKRIRIHDLRH 305 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324 ++ + G +A + G ++V+ Y Sbjct: 306 SHVSLLINMGYSAVAIGERVGHESVEITYRYAH 338 >gi|75909304|ref|YP_323600.1| tyrosine recombinase XerD subunit [Anabaena variabilis ATCC 29413] gi|75703029|gb|ABA22705.1| tyrosine recombinase XerD subunit [Anabaena variabilis ATCC 29413] Length = 311 Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 49/278 (17%), Positives = 91/278 (32%), Gaps = 26/278 (9%) Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 + TT + +I + L+ +R + Q D R I+ + + Sbjct: 24 EDTTTTERVIELWLV-----GLSRTTREQYSRDMRQFRAFVKLDDIRIISPMTFIAYAQH 78 Query: 126 RKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + T + + + L S+ +AVR ++A NP +V +PK T + Sbjct: 79 LEQTYAVATTRRKLASLSSFCSFAVRLGFLAANPMAAVRKPKASTTLAGKSLTQQQVFRM 138 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----GTIITVELPD 239 ++ + R + L GLR S++ + T G T+ +P Sbjct: 139 LDRTDDHRNRCLLKVLYSLGLRVSEAVGLRWSDFTEVNPTKTTVSVLGKGGKYRTLVVPQ 198 Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSI-------------WFKAKATKAGVN--K 284 L ++ N+ + + + KA A G+ Sbjct: 199 SVWLELTELRTNQQHNGQNDYVFQSYSNRHRKQSGKQLDRCNASKIVKACAVAVGLPESV 258 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 SAH +R A+ S GA+ + T G + Y Sbjct: 259 SAHFLRHACASHSLANGASIQLVKETLGHANISTTNWY 296 >gi|322411263|gb|EFY02171.1| Integrase [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 381 Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 43/380 (11%), Positives = 112/380 (29%), Gaps = 52/380 (13%) Query: 11 VTKERTRHGKIIYYFRKG------HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64 +T+ + ++G I+Y G+R++ + + Sbjct: 3 ITEHKKKNGTIVYRASIYLGIDQMTGKRVKTSITGRTQTEVKQKAKHAQLDFLSNGSTIH 62 Query: 65 RKKPTT-LKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSG 122 ++ + + L + KS + + ++ + + +I G K+T +I+ Sbjct: 63 KEAQISNYQELAELWLKSYQLT-VKPQTFVATKRMLHNHLIPIFGSLKVEKLTVSYIQRF 121 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE----- 177 + + + R + ++ V + + NP V PK + Sbjct: 122 INDLSNQLMHYGVVHSINRRVLQYGVSLQLIPFNPARDVILPKVPKRENKVIKFIASEDL 181 Query: 178 -----DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 M++ + + + LL +G R ++ + + +I K + Sbjct: 182 KELLSYMERLANKKYIYYFDYVLYNVLLATGCRFGEAVALEWSDIDLEVGTIDINKNYSR 241 Query: 233 ITV--------------------------ELPDGFMKLLAMTPIGKETFFINNDKQKMNA 266 + L ++ + F +K+ N Sbjct: 242 LLKLLGTPKSKAGFRVISIDKKTVNMLKLYKNRQRQLFLEVSDCAPKVVFATPNKEYQNM 301 Query: 267 TQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324 + + + + + H R A++ +AG + EL G T+ Y+ Sbjct: 302 GTRQDSLDRRCAEIAIPRFTFHAFRHTHASLLLNAGISYKELQYRLGHATLAMTMDIYSH 361 Query: 325 GA-DRIRLGIK----NSRRI 339 + D+ + + + Sbjct: 362 LSKDKEKEAVSFYEKAMNNL 381 >gi|312872206|ref|ZP_07732279.1| site-specific recombinase, phage integrase family [Lactobacillus iners LEAF 2062A-h1] gi|311092290|gb|EFQ50661.1| site-specific recombinase, phage integrase family [Lactobacillus iners LEAF 2062A-h1] Length = 329 Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 33/276 (11%), Positives = 78/276 (28%), Gaps = 14/276 (5%) Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119 T + ++ + + + S + + + + K + R++ T + Sbjct: 40 ETEEEVNAELTNEQFLNNFLAAKRIEGCSEKSLTYYRATIEVMTTKI-KKNVREMETDDL 98 Query: 120 R----SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 R + + + + F W + Y+ +P + + K +T Sbjct: 99 RTYLTEYQHEKNSSKVTVDNIRRILSSFFSWLEDENYILKSPARRIHKVKAALTIKETYT 158 Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIIT 234 E +++ + E + + L +G+R + + Sbjct: 159 DEALEKMRDSC-EEPRDLALIDILASTGMRVGELVLLNRDDINFEERECVVFGKGSKERM 217 Query: 235 VELPDGFMKLLAMTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAH 287 V L G+ +++ + K + K H Sbjct: 218 VYFDARTKIHLLTYLQGRTDDNPALFVSLRAPHERLKIGGVECRLRELGNKLDIEKVHPH 277 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 R+ AT++ D G +L G K +D Y Sbjct: 278 KFRRTLATMAIDKGMPIEQLQQLLGHKRIDTTLQYA 313 >gi|224539317|ref|ZP_03679856.1| hypothetical protein BACCELL_04222 [Bacteroides cellulosilyticus DSM 14838] gi|224519064|gb|EEF88169.1| hypothetical protein BACCELL_04222 [Bacteroides cellulosilyticus DSM 14838] Length = 393 Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 39/285 (13%), Positives = 86/285 (30%), Gaps = 27/285 (9%) Query: 75 ISEYRKSAHWGS----LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 +++Y +S + + + + D +I +I ++ K Sbjct: 105 LTDYIQSVAEKKSENEVRKTVLHAVVYHLRRYNPN--DIQLSRIDKDYILGFLDYLKTAK 162 Query: 131 SS---------AI---QFLTSMRVLFKWAVRQEYVAINPCLSVER---PKRKTEGIRPWT 175 + + +R +AV +E ++ NP ++ P + T Sbjct: 163 QTHTKKEKLLHVNTQVYYYKMLRYCLNYAVSEELISANPMNKIKNEEKPHKHRTEREYLT 222 Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 +++++ + AF F + GLR SD ++ + T Sbjct: 223 IDELRKLAQTPFYNGLLKKAFLFSCFCGLRHSDIIALTWGDIEMDDDGNSRLYIIQKKTK 282 Query: 236 ELPD---GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 E + + K+ + + + A +AG+ K + H R Sbjct: 283 EAISLPLSQEAIKQLPKREDAKEDDIIFKKLITLGRTNEILPKWAEQAGIKKHITFHTAR 342 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIK 334 AT+ G + + G + + Y K D + I Sbjct: 343 HTHATMLLTLGVDLYTVSKLLGHTNIQTTQIYAKLVDESKKKAID 387 >gi|91790655|ref|YP_551607.1| phage integrase [Polaromonas sp. JS666] gi|91699880|gb|ABE46709.1| phage integrase [Polaromonas sp. JS666] Length = 291 Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 41/269 (15%), Positives = 83/269 (30%), Gaps = 23/269 (8%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHT 129 L + LA ++ + ++ R ++ + + + V+ RK + Sbjct: 4 LRQRMLDAMTVRGLAERTQECYAEAVSRMARHY-HRSPDLLSPQEVEAYLLHLVKDRKLS 62 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 SS ++ R LF+ + ++ + P+++ + Sbjct: 63 YSSVNHAASASRFLFETVLGRKSDEHLRPPMAKVPQKQPH----LLAREEIARLFACCAH 118 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----NNIFSIKTQKTGTIITVELPDGFMKLL 245 R+A + L +GLR S+ R V + + K G L + LL Sbjct: 119 PAYRMALQTLYATGLRVSEVGRLRVSDIDSAADRMCVRVNAGKGGADRYSILSPSLLALL 178 Query: 246 AMTPIGKETFFINNDKQKMNAT--------QFSIWFKAKATKAGVNKS--AHGVRKFSAT 295 + N T ++A AG+ KS H +R AT Sbjct: 179 RLYCQTYAPQRNPGKWLFANGTGERGVGIESLQRAYQAARHCAGITKSGGTHTLRHCFAT 238 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324 ++G + + G + + Y Sbjct: 239 HLLESGVDLYTISRLLGHRHISTTSRYLH 267 >gi|323186667|gb|EFZ71993.1| phage integrase family protein [Escherichia coli RN587/1] Length = 300 Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 46/272 (16%), Positives = 83/272 (30%), Gaps = 25/272 (9%) Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK- 127 T L ++ SA++ L+ ++ + + +++ G I HIR ++ R Sbjct: 1 MTFGRLWEKFLASAYYSDLSPRTQKDYLQHQKKLLAVFGKVPADSIKPVHIRRYMDKRGE 60 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + + A +SM ++ W + YV NPC V + K K KE Sbjct: 61 QSKTQANHEKSSMSRVYSWGYERGYVKGNPCAGVSKFKAKNRERYVTDKEYQAVLSVAP- 119 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247 +A E R SD + + N+ I+ KTG + Sbjct: 120 --LPVFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAAIEK 177 Query: 248 TPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAGV------NKSAHGVRKFSATISAD 299 N + F+ + +AG + + H + Sbjct: 178 AKQLPTSAYVISNQYGNRYMYKGFNEMWVEARNRAGKISGILTDFTFHDL--------KA 229 Query: 300 AGATA-----HELMATYGWKTVDQAETYTKGA 326 G + + G KT Q Y + Sbjct: 230 KGISDYEGSSRDKQLFSGHKTEGQVLIYDRKV 261 >gi|317477406|ref|ZP_07936636.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] gi|316906434|gb|EFV28158.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] Length = 239 Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 36/218 (16%), Positives = 70/218 (32%), Gaps = 11/218 (5%) Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 ++ + + + Q + +++ + + C V R KR+ +K Sbjct: 6 DYLLYLIHEKNISSCQQNQRINAIK----FYYEKVLGQERRCYKVNRAKREKTLPDVLSK 61 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIIT 234 E++++ + F L +GLR S+ + + ++ K Sbjct: 62 EEIKKILDATVTDLRFFCMFSILYSAGLRISELLELKPGDINESRSLIRVRQGKGKKDRY 121 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQK---MNATQFSIWFKAKATKAGVNKS--AHGV 289 L MK L + + + + S KA A +AG+ K H + Sbjct: 122 TLLSKPLMKKLTEYNRLYKPKVWLFEHRPGEPFTESIVSKRLKAAAREAGITKRIYPHLL 181 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 R AT + G + G + E Y AD Sbjct: 182 RHSFATHLLEQGTDIKIVKELMGHNNIKTTERYVHIAD 219 >gi|325678186|ref|ZP_08157815.1| site-specific recombinase, phage integrase family [Ruminococcus albus 8] gi|324110078|gb|EGC04265.1| site-specific recombinase, phage integrase family [Ruminococcus albus 8] Length = 324 Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 40/321 (12%), Positives = 94/321 (29%), Gaps = 45/321 (14%) Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGV 123 ++ T++ ++++ + +L S E I + G +K+++ I+ + Sbjct: 5 KQTNETVEEYMTKWLITVKKPTLKPTSFDRVELSLKYQIFPRIGTIKMKKLSSDDIQIML 64 Query: 124 ESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 S ++ S+ + +++ K A +E + NP +V P+ + + + Q Sbjct: 65 NSLSEVYSHSTVKKAYVNLKSCLKMAEIREDIKKNPIHAVVLPRNTSPNEVSFYSAEQVQ 124 Query: 182 FKSFWSEGS--------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI- 232 + + + LL +G+R ++ + + SI K Sbjct: 125 MIVSEAVSTYKNGTFKYRYGYLIVLLLNTGMRLGEALALQWEDVDWPKRSIHICKNVENV 184 Query: 233 ----------------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT--- 267 + L D M L + N Sbjct: 185 KSRNGDKSYTKIIQMPKSDKSVRRIPLNDNAMDALVKLNSMQAEMNCKLVVATENGNYVD 244 Query: 268 --QFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHELMATYGWKTVDQAET- 321 ++ G++ H +R AT+ G + G V Sbjct: 245 GGNVRRTMQSILNNCGIHGKTDIVHALRHTFATLLIRRGVDIKMVSELLGHSDVTITMKF 304 Query: 322 YTKGADRIRLGIKNSRRISSV 342 Y + + R++ + Sbjct: 305 YYHVVEEQK--NTAIRKLDDL 323 >gi|125623479|ref|YP_001031962.1| integrase-recombinase [Lactococcus lactis subsp. cremoris MG1363] gi|124492287|emb|CAL97219.1| integrase-recombinase [Lactococcus lactis subsp. cremoris MG1363] gi|300070227|gb|ADJ59627.1| integrase-recombinase [Lactococcus lactis subsp. cremoris NZ9000] Length = 311 Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 36/302 (11%), Positives = 90/302 (29%), Gaps = 36/302 (11%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT- 129 + L+ EY G+ + + ++E + D+ I +++ I + Sbjct: 3 FEQLVKEYLLELKLGNYSKRTMETYEQHIDKFIDFYRKEICKEMDIYAINKMHYKLFISQ 62 Query: 130 -------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + L S + + + +R++ + +P S++ K + + + ++++ Sbjct: 63 LLDNSLRATYINAILKSNKAFYSYLIREQVLKTSPMDSIKLLKETKQALTTFNDDEVKAM 122 Query: 183 KSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 + W+ + + + L +G+R S+ L + K V + Sbjct: 123 LNVWNFNTYLNARNKCIIAVLADTGIRISELINIKDSDLTDQYIR-VLGKGDKWRVVPIS 181 Query: 239 DGFMKLLAMTPIGKETFFINNDKQK-------------MNATQFSIWFK----------A 275 + LL ++ F + Sbjct: 182 NELNYLLTKYKRLRDNHFNKIRNRNGKVRELDSELFLGKTGRSIKTITNIEVMITQTGLQ 241 Query: 276 KATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 +A V S H R + S + G + G + + Y + +L K Sbjct: 242 ANVRASVRCSPHQFRHYWTCKSLELGQDIFTISKLLGHTNLSTTQIYLQKLTNEQLISKA 301 Query: 336 SR 337 + Sbjct: 302 VK 303 >gi|330997617|ref|ZP_08321462.1| site-specific recombinase, phage integrase family [Paraprevotella xylaniphila YIT 11841] gi|329570145|gb|EGG51885.1| site-specific recombinase, phage integrase family [Paraprevotella xylaniphila YIT 11841] Length = 410 Score = 98.3 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 40/319 (12%), Positives = 97/319 (30%), Gaps = 28/319 (8%) Query: 53 GSTPKREYINSPRKKPTTLKWLISEY---RKSAHWGSLAVNSRISFESYFDQIIRKSG-- 107 + +E + K TTL + E+ + ++ +S ++ + G Sbjct: 92 EAKDVKEALQGSVKTQTTLLSFVDEHISELSTHEGIDMSKSSVWTYRKIHKNLAEFIGEK 151 Query: 108 ----DFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159 D + ++T I + + + + +++ + + + A + Sbjct: 152 YRLTDLAFGQLTEPFISDFHHYLLDEKGFSSGTITIYVSLFKKMCRIAFERGLCKNLLFA 211 Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL-----AFEFLLYSGLRCSDSCRAGV 214 + + + D + + +PRL F F Y+G D+ Sbjct: 212 HYRVGTPRVTTPKSLSMSDFIKIRDVELPEDKPRLSVSRDMFLFACYAGTAFIDTVSITK 271 Query: 215 QHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT---PIGKETFFINNDKQKMNATQFSI 271 +++ K +KLL E + ++ + I Sbjct: 272 ANVKVLEDGDKWLIYN--RKKTGTLARVKLLPEALELMAKYEDEARDTLFPLLSTNRVRI 329 Query: 272 WFKAKATKAGVNKSA--HGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADR 328 A +K+ H R A++ +AG + G K V + Y + + Sbjct: 330 DLITICKLAETSKTYSYHSGRHSFASLITLEAGVPMETICKMLGHKDVKMTQRYARVT-Q 388 Query: 329 IRLGIKNSRRISSVVDSDD 347 +L ++ + + + D Sbjct: 389 KKL-FEDMDKFIAATEKDF 406 >gi|331270786|ref|YP_004397223.1| integrase/recombinase [Clostridium botulinum BKT015925] gi|329127504|gb|AEB77447.1| integrase/recombinase [Clostridium botulinum BKT015925] Length = 272 Score = 98.3 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 27/267 (10%), Positives = 81/267 (30%), Gaps = 15/267 (5%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH----TP 130 + ++ + + + + ++++ + ++ +ITT ++R + +P Sbjct: 5 LEKFIEYLYQEDKSEKTIYTYKNDIKRFVKYFEKNKL-EITTINMRKFKDYLLEVLLLSP 63 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 + + + ++R ++ + + I + ++ + Sbjct: 64 KTVNRNIIAIRQFLEYLHINNIDIKMIKIQDQGFLDD---ILTNDEAIRMIKETEKARDL 120 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250 + + L Y+G+R S++ + + + K V +P K+ Sbjct: 121 RAKAFICTLYYTGMRVSEAISVLSKDINEDSIR-ILGKGRKYRDVLIPKKLKKIWKDYMT 179 Query: 251 GKETFFINNDKQK---MNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATA 304 + + ++ K A + K H R D G Sbjct: 180 VRINNSDKLFTGREGGISRFTALNIVKKYGGMAKIKKDKVYNHAFRHLYCINLVDRGIPI 239 Query: 305 HELMATYGWKTVDQAETYTKGADRIRL 331 + G + + YT+ + + L Sbjct: 240 DAVKDLAGHENISTTTIYTRKSKKQLL 266 >gi|313635335|gb|EFS01619.1| phage integrase family site specific recombinase [Listeria seeligeri FSL N1-067] Length = 366 Score = 98.3 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 56/365 (15%), Positives = 110/365 (30%), Gaps = 43/365 (11%) Query: 16 TRHGKIIYYFRKG------HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 T+ + Y G++ R+ + + ST A P K Sbjct: 4 TKTARKSYRVDISLGVDPLTGKQRRVRHNNISTKRSAQQLENNLKQHYYNGTLLP-DKSL 62 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR-- 126 T K L + Y +S + + Y+ + + D +KIT HIR E Sbjct: 63 TFKQLGNLYFQSYTI-NHKPTYIRTQRGYYSNHLFPYFKDCLIKKITQTHIREFREHLLT 121 Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + +S + + ++ +F AV + + NPCL +++ K + ++ WT + F S Sbjct: 122 LNLSFNSINKHMILLKKIFDVAVDESLIYTNPCLRIKKLKIIKQKMQFWTTTEYLHFISC 181 Query: 186 WSEGSQPR-LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--------- 235 E + + ++ +G+R + + I KT + I Sbjct: 182 IREDEEVHKIFYQTAYLTGMRAGELLALKWSDINLVKQEIHVCKTVSRIDGKMIVTPPKS 241 Query: 236 ------------------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277 + KLL F + + + + Sbjct: 242 ETSNRVITVNSKLAKMLADWKLAQSKLLPAISTKDLVVFQHKTSHPIRENFGTKKIQRIC 301 Query: 278 TKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGA-DRIRLGIK 334 + V H R + D G + G ++ +TY ++ R Sbjct: 302 KRCAVHPIRLHDFRHSHVALLIDNGENITVIKERMGHASITTTIDTYGHLFPNKQREMSD 361 Query: 335 NSRRI 339 + Sbjct: 362 KLDFL 366 >gi|160887404|ref|ZP_02068407.1| hypothetical protein BACOVA_05423 [Bacteroides ovatus ATCC 8483] gi|156107815|gb|EDO09560.1| hypothetical protein BACOVA_05423 [Bacteroides ovatus ATCC 8483] Length = 390 Score = 98.3 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 62/388 (15%), Positives = 110/388 (28%), Gaps = 57/388 (14%) Query: 4 SLRLPPFVTKERTRHGKIIYY---FRKGHGRRIRLPY----------------PHESTFI 44 L+ P + + G Y + KG + L Sbjct: 9 KLKEPIKIRLKSLADGNKSIYLDIYYKGVRKYEYLKLYLVPEINPVCKEQNKQTMAIAER 68 Query: 45 PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR 104 + + ++ L I +Y + + ++ + + Sbjct: 69 IKAERIKALHGHGIQDWETVKQGSMLLTTWIKKYCEGGV--GIKKSTLHCRVEMLHTVEK 126 Query: 105 KS-----GDFDYRKITTKHIR--------------SGVESRKHTPSSAIQFLTSMRVLFK 145 G ++ + R E R + ++A ++L Sbjct: 127 YLDETNKGFIALEEVNAEFCRGYVKFLRNFPNSHIKYGEPRPISENTASRYLGMFSTALN 186 Query: 146 WAVRQEYVAINPCLS---VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202 AVRQ + NP ER + K T E+++ + S + + AF F ++ Sbjct: 187 NAVRQGIIRNNPMKELDARERIQPKEGKKEYLTIEELRTLIATDSYRPEVKEAFIFACFT 246 Query: 203 GLRCSDSCRAGVQHLQNN------IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF 256 GLR SD R H+ ++ QKT + + L + + L FF Sbjct: 247 GLRLSDMYRLAPMHIFKTADGKGEYIDMEMQKTEKPVIIPLSEEAKRWLPKPRGNDIPFF 306 Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWK 314 T A AG+ K S H R T+ GA G Sbjct: 307 DI----PTTQTVIGRALHKWAEAAGIEKHISFHCSRHTFGTMMLTLGADLFTTSKLMGHS 362 Query: 315 TVDQAETYTKGADRIRLGIKNSRRISSV 342 + E Y K D+ + + I + Sbjct: 363 NIQTTEIYAKIVDKKK--EEAINLIDGM 388 >gi|116511115|ref|YP_808331.1| integrase [Lactococcus lactis subsp. cremoris SK11] gi|116106769|gb|ABJ71909.1| Integrase [Lactococcus lactis subsp. cremoris SK11] Length = 398 Score = 98.3 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 48/381 (12%), Positives = 114/381 (29%), Gaps = 62/381 (16%) Query: 10 FVTKERTRHGKIIYYFRKG-------HGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62 + + +T+ G++ Y R G+++R + + + Sbjct: 5 NIKEYKTKSGEVRYILRGAYIGTDVLTGKQVRTDVRGRTKKDVKTKLQRLQNDFIKNGCM 64 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRS 121 K+ T + + ++ +S S ++ I+ G+ ++TT I+ Sbjct: 65 KKEKQLKTFAEVAESWFDMYQ-HTVKSHSIEIMRSNLNRYILPAFGNTKIDRLTTSQIQL 123 Query: 122 GVESRKHTPSS----AIQF-----------LTSMRVLFKWAVRQEYVAINPCLSVERPK- 165 V A++ L +FK+A+ V+ NPCL+V P Sbjct: 124 QVNRWAKNAGQPLNGAMRRNKGNAKGYKLLLNVTNRIFKYAISMGLVSSNPCLTVIVPNV 183 Query: 166 ---------RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216 + + + D + ++ R L SGLR ++ Sbjct: 184 KMETTEREVKHFNKEQLQSYFDYMESLPNTWVNNELRAICRLLTASGLRIGEATALSWSD 243 Query: 217 LQ--------------NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262 + + + + V + + L + ++++F+ + Sbjct: 244 IDFEKQTISVSKTTTGHQTIQDTPKTKHSKRVVIIDSKTISHLQRWHLYQKSYFLKLGQP 303 Query: 263 KMN------------ATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMA 309 + + +A + + HG R A++ +AG + E+ Sbjct: 304 NQSLIFPTNQGKILDYQRLRKSLQATFKATELHDIGFHGFRHSHASLLLNAGVSYKEIQT 363 Query: 310 TYGWKTVDQAE-TYTKGADRI 329 G ++ Y+ Sbjct: 364 RLGHASIKMTMDIYSHLEKEK 384 >gi|256751913|ref|ZP_05492784.1| integrase family protein [Thermoanaerobacter ethanolicus CCSD1] gi|256749218|gb|EEU62251.1| integrase family protein [Thermoanaerobacter ethanolicus CCSD1] Length = 403 Score = 98.3 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 57/392 (14%), Positives = 127/392 (32%), Gaps = 70/392 (17%) Query: 18 HGKII----YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP-TTLK 72 GK Y G+G+R E L + + P + T+K Sbjct: 13 KGKKYKISFYIGTDGNGKRKYYIETIECKNKAEAQKYLAKKIVEYDTGTLPIDETNITVK 72 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR---KH 128 + ++ ++ SLA+ + +E I G++ K+T I++ + Sbjct: 73 DYLKKWLETKK-SSLALKTYNDYEQKIRLYIDPAIGNYKLLKLTPLIIQNMYNNMLEQGL 131 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + + T + K A++ + + NPC PK+ + ++ T E ++F Sbjct: 132 SARTIRYTHTVLNEALKQAIKWQMLRYNPCDGTTLPKQAKKEMKVLTPEQAKKFLEACVY 191 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQ----------------HLQNNIFSIKTQKTGTI 232 + + FE LL SG+R S++ + ++NN + + + Sbjct: 192 N-RWGILFELLLISGMRPSEALGLKWEDIDWKNNRIAVQRTLTRVKNNWQLKEPKTPQSR 250 Query: 233 ITVELPDGFM------------------KLLAMTPIGKETFFINNDKQKMNATQF----- 269 T+ LP M + + + +++ + + Sbjct: 251 RTIPLPREVMNDLKEHRKQQSEEKLKAKEYINYDKDKNKFKPEKWEEKLKDPKVYVDYGL 310 Query: 270 ----------------SIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYG 312 +FK AG+ + +R AT+ AG + G Sbjct: 311 VFATETGRPLDLANINYQYFKPLLKNAGLPNIRLYDLRHTCATLLLLAGENPKVVSERLG 370 Query: 313 WKTVD-QAETYTKGADRIRLGIKNSRRISSVV 343 + +TY+ + + ++++ ++ Sbjct: 371 HANITLTLDTYSHVLPT--MQEEATQKLKQML 400 >gi|205320825|gb|ACI02940.1| TnpF [uncultured bacterium HH1107] Length = 221 Score = 98.3 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 32/212 (15%), Positives = 74/212 (34%), Gaps = 12/212 (5%) Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 RK + S Q + +++ + + +ERPK++ ++E+ + Sbjct: 1 MERKVSISYQNQAINAIK----FYYERVLGGQRKTYFIERPKKEKTLPVVMSEEETIRVL 56 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 E + + + +GLR S+ ++ + + I+ +++ Sbjct: 57 RAI-ENVKHKAILMTIYSAGLRISECINLKIKDIDSKRMQIRIEQSKGKRDRYTILSEKT 115 Query: 244 LLAMTPIGKETFFINNDKQ-----KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296 L+ + E + + ++ FKA KA + K + H +R AT Sbjct: 116 LIILRTYFMEYKPKDYLFEGQKGGAYSSRSIQNIFKAAVLKAKIQKEVTVHTLRHSFATH 175 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADR 328 + G + + + G + E YT + Sbjct: 176 LLENGTSLRYIQSLLGHSSSKTTEVYTHITTK 207 >gi|251783070|ref|YP_002997373.1| putative phage integrase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391700|dbj|BAH82159.1| putative phage integrase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 408 Score = 98.3 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 55/374 (14%), Positives = 100/374 (26%), Gaps = 53/374 (14%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKG---HGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60 + P + T GK YY R+G +G + + T A L K E Sbjct: 25 KTKYP-NIFWYVTLKGK-RYYIRRGYYLNGEKKEATESNIKTIREA-RLILAEIERKIEN 81 Query: 61 INSPRKKPTTLKWLISEYRKSA-HWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKH 118 K T+ Y + G+ + ++ + + F I K G+ I Sbjct: 82 NEFAYNKNLTVDEYWEIYVDNRLKAGAWSPDTYVERTNIFKNHISSKFGNKKMNAINRIE 141 Query: 119 IRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER---PKRKTEGIRP 173 + + + ++ S+ ++ AV+ + + N ++ + R Sbjct: 142 YENYINNLLNTNSRSTVKHIYDVFSIMLNHAVKNKMLDDNIIKFIDIGDSEIKPINKRRS 201 Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT---- 229 + + GLR S+ + ++ N K Sbjct: 202 MQEFKAWDKIAREMLDDYDYAMVRITYL-GLRRSEVAGIKLGNITFNDKDCAVVKIDESR 260 Query: 230 -------------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQ-------------- 262 + V L +LL + ND+ Sbjct: 261 TRGRKDGGSLKTAYSERYVYLDFETSQLLKKAIDTSIKIAVCNDRILNKADFLFLGDDEK 320 Query: 263 --------KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWK 314 + + FK V+ + H +R F AT AG + A G Sbjct: 321 VKPSFVGKPIGSHYIYCLFKKINKNCDVHFTPHMMRHFFATQGQIAGVPIEHMAAALGHS 380 Query: 315 TVDQAETYTKGADR 328 YT D Sbjct: 381 NNYMTSQYTHIKDE 394 >gi|229825965|ref|ZP_04452034.1| hypothetical protein GCWU000182_01329 [Abiotrophia defectiva ATCC 49176] gi|229789707|gb|EEP25821.1| hypothetical protein GCWU000182_01329 [Abiotrophia defectiva ATCC 49176] Length = 366 Score = 98.3 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 57/340 (16%), Positives = 103/340 (30%), Gaps = 33/340 (9%) Query: 20 KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79 + +Y+ G R + T A S + Y Sbjct: 16 RSQFYYTDRTGARHKKNKRGFKTKREA------QQFEAEFVRISKADMDMKFASFVEIYL 69 Query: 80 KSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138 K L + + D +I G+ +I I + ++ K + +L Sbjct: 70 KDKEV-ELKQRTLRNKRYMIDTHVIPYFGEKKMNEIMPADIIAWQKTIKENNEFSEAYLR 128 Query: 139 SMR----VLFKWAVRQEYVAINPCLSVERPKRKTEG-IRPWTKEDMQQFKSFWSEGSQPR 193 ++ +F AV+ + +NPC SV++ R + I WT ++ Q F + S Sbjct: 129 MLQNQVTAIFIHAVKIYSLRVNPCKSVKKMGRSDDRSITFWTFDEYQHFIRTYDTTSMHY 188 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------------ITVEL 237 L FE L ++G+R + + + SI KT TV + Sbjct: 189 LMFEILFWTGMREGELLALTMNDIDFTQMSIHISKTYYRMNRQDIITEPKTDNSVRTVAV 248 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATI 296 P M + + + + A K KA V H +R Sbjct: 249 PKFLMDDIKCYYERLYKYPRDARLFPIVAEALQHSMKRHTAKADVKPIRVHDLRHSHCAY 308 Query: 297 SADAGATAHELMATYGWKTVD-QAETYTKG--ADRIRLGI 333 G + G K + TY +++ ++ Sbjct: 309 LIHQGIQPLLIKERLGHKDIRITLNTYGHLYPSEQKKVAD 348 >gi|153831894|ref|ZP_01984561.1| IntI [Vibrio harveyi HY01] gi|148871892|gb|EDL70715.1| IntI [Vibrio harveyi HY01] Length = 320 Score = 98.3 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 32/301 (10%), Positives = 85/301 (28%), Gaps = 53/301 (17%) Query: 79 RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138 ++ A + ++ + + I K+ + + A++ Sbjct: 10 KEHMISRHYAKKTIETYLFWIKRYIVFHQLAHPSKLCEDDVERFLSHLAIDEKVAVKTQA 69 Query: 139 -SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197 ++ + + ++ + ++ + + T+ +++ + + +L + Sbjct: 70 LALNAISFLYREYFQMPLSLNMRFQKSLTEKKLPVVLTRNEVR--RFVQHIDPKYKLHIQ 127 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-----------------------------K 228 L SGLR + R +Q + + +++ Sbjct: 128 LLYGSGLRIMECLRLRIQDIDYDYGALRVWQGKGGKNRTVTLAKELHEPLKAQVNLTRDY 187 Query: 229 TGTIITVELP-------------------DGFMKLLAMTPIGKETFFINNDKQKMNATQF 269 + + L T + + + +N + Sbjct: 188 YQKDRHMGGYAGVYISDGLRRKYPGAELDFNWHFLFPSTKLSIDADTGEFRRHHVNESAI 247 Query: 270 SIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 K A AG+ K + H +R AT ++GA + G V + YT + Sbjct: 248 QRAVKRAAKDAGIEKSVTCHTLRHSFATHLLESGADIRTVQEQLGHTDVKTTQIYTHVIE 307 Query: 328 R 328 R Sbjct: 308 R 308 >gi|257784351|ref|YP_003179568.1| integrase family protein [Atopobium parvulum DSM 20469] gi|257472858|gb|ACV50977.1| integrase family protein [Atopobium parvulum DSM 20469] Length = 403 Score = 98.3 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 52/365 (14%), Positives = 101/365 (27%), Gaps = 57/365 (15%) Query: 15 RTRHGKI---IYYFRKGHG------RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65 RHG FR G + + +P A +A + Sbjct: 5 VKRHGTFWQARVRFRGADGTIQEKSKSLGIPCAAGRGKKVARAAAEKWVQDAGFVEVVEQ 64 Query: 66 KKPTTLK----WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 + T L Y KS + + S+++ I G+ ++IT + Sbjct: 65 NQATRLDCSAYTYCLNYFKSLVATQQIERRTYTSYKNNVRYIDLFFGEKRLQEITVTDVE 124 Query: 121 SGVESRKHTPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 V + +A + R + AV + +PC +++ PK P + Sbjct: 125 LYVSWLYDSGYAANTVKKAFNSFRACTRHAVAIRDLQYDPCAAIKAPKGYLAPPNPLNEP 184 Query: 178 DMQ--QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----- 230 + Q E S LA Y+G+R + C + ++ + Sbjct: 185 SRKKLQVMLSALELSPMVLATYLAYYTGMRREECCGLQWKDVKFKAEDVTAHLCRAISYD 244 Query: 231 ------------TIITVELPDGFMKLLAMTPIGKETFFINNDKQKM-------------- 264 TV +P + +L + Sbjct: 245 GGKTYIKGLKNGKDRTVPIPAPLVDILKQWRSKYIEDCMLMGIAFSEEMYVLGDFSGEYL 304 Query: 265 NATQFSIWFKAKATKAGVNKS------AHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 + + W+K+ + + G+ + H +R ATI+ G ++ Sbjct: 305 RPERATAWWKSHSEEWGLLGTQGRRPVFHDLRHTYATIAV-RTMDIKSAQDILGHSDINM 363 Query: 319 AETYT 323 Y Sbjct: 364 TMRYA 368 >gi|118577353|ref|YP_899593.1| phage integrase family protein [Pelobacter propionicus DSM 2379] gi|118504858|gb|ABL01340.1| phage integrase family protein [Pelobacter propionicus DSM 2379] Length = 318 Score = 98.3 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 33/301 (10%), Positives = 89/301 (29%), Gaps = 33/301 (10%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESR 126 L+ + Y + +L+ +R + D + S G+ I + + R Sbjct: 12 LQRWVVAYMQEITNKNLSGRTRDIYAGILDDFVEHSRQFQGELGIEDINRIFLNGYLAER 71 Query: 127 KHTPS-----SAIQFLTSMRVLFKWAVRQEYVAINPCLSVER----------PKRKTEGI 171 +T + +T ++ F + + ++ P + + Sbjct: 72 GNTGRRFSATTKKLHITVLKTFFLYITENNDNNHDFEKMFKKMNIKSESNEKPALNEDDV 131 Query: 172 RPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT--- 226 + + ++ ++ + R L + +L+ GLR + ++ + + Sbjct: 132 QRLLNYLEKIKRARRNQNTNIRNTLLCKIMLFGGLRAVELTHLRLKDMVYDKEDDIYSLL 191 Query: 227 ------QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280 ++ I L + ++ L + + ++ T +A Sbjct: 192 IEGKGGKQRTVYIPRTLIEDEVETLKEEYGEEWLICSTRNGTIVDRTNLYQIITGIYKRA 251 Query: 281 GVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKG-ADRIRLGIKNSR 337 GV+ + H +R A + + G + Y K + + I Sbjct: 252 GVDHTGLHILRHTFARRLVNNNTNLETIRDLLGHSNIAITAKFYAKTNENNKKAAISRLM 311 Query: 338 R 338 + Sbjct: 312 K 312 >gi|15923382|ref|NP_370916.1| integrase-like protein [Staphylococcus aureus subsp. aureus Mu50] gi|156978720|ref|YP_001440979.1| integrase-like protein [Staphylococcus aureus subsp. aureus Mu3] gi|255005188|ref|ZP_05143789.2| integrase-like protein [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257878702|ref|ZP_05658355.1| phage integrase [Enterococcus faecium 1,230,933] gi|261206968|ref|ZP_05921657.1| Int459 [Enterococcus faecium TC 6] gi|282926486|ref|ZP_06334117.1| integrase-like protein [Staphylococcus aureus A9765] gi|289168180|ref|YP_003446449.1| site-specific recombinase, phage integrase family [Streptococcus mitis B6] gi|289565395|ref|ZP_06445845.1| phage integrase family site-specific recombinase [Enterococcus faecium D344SRF] gi|294615418|ref|ZP_06695290.1| integrase [Enterococcus faecium E1636] gi|304380399|ref|ZP_07363079.1| phage integrase family site-specific recombinase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|13274514|gb|AAK17958.1|AF329848_10 Int459 [Clostridium perfringens] gi|14246160|dbj|BAB56554.1| integrase homolog [Staphylococcus aureus subsp. aureus Mu50] gi|156720855|dbj|BAF77272.1| integrase homolog [Staphylococcus aureus subsp. aureus Mu3] gi|257812930|gb|EEV41688.1| phage integrase [Enterococcus faecium 1,230,933] gi|260078596|gb|EEW66298.1| Int459 [Enterococcus faecium TC 6] gi|269939969|emb|CBI48342.1| integrase [Staphylococcus aureus subsp. aureus TW20] gi|282592206|gb|EFB97226.1| integrase-like protein [Staphylococcus aureus A9765] gi|288907747|emb|CBJ22584.1| site-specific recombinase, phage integrase family [Streptococcus mitis B6] gi|289162885|gb|EFD10735.1| phage integrase family site-specific recombinase [Enterococcus faecium D344SRF] gi|291591700|gb|EFF23337.1| integrase [Enterococcus faecium E1636] gi|302179991|gb|ADK98559.1| phage integrase [Enterococcus faecium] gi|304341074|gb|EFM06994.1| phage integrase family site-specific recombinase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315035976|gb|EFT47908.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0027] gi|323465494|gb|ADX77647.1| integrase [Staphylococcus pseudintermedius ED99] gi|329313108|gb|AEB87521.1| Integrase -like protein [Staphylococcus aureus subsp. aureus T0131] Length = 397 Score = 98.3 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 47/346 (13%), Positives = 111/346 (32%), Gaps = 49/346 (14%) Query: 14 ERTRHGKIIYYFR-----KGHGRRI---RLPYPHESTFIPAYMSALTGSTPKREYINSPR 65 ++ ++G YYFR G++I R + + Y L + S Sbjct: 7 KKAKNGT--YYFRANLGYDSKGKKIQKYRSGFTTKKEAREEYSKLLL----MKPEELSEN 60 Query: 66 KKPTTLKWLI-SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 K T K I + + + + + + I +++ Sbjct: 61 KDKMTFKHYIFEIFLPWYK-TQVKLRTYENRLPTIKKHFSYFDKMAVSDIEPIDVQNWQL 119 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYV----AINPCLSVERPKRKTEGIRPWTKEDMQ 180 S ++ +++ LF A+ + V NP + K++ I WTKE+ + Sbjct: 120 KLSKKCKS--SYVRAVQGLFSVAMDRAIVLGITTTNPSKIIGNVKKQKSKIEFWTKEEFE 177 Query: 181 QFKSFWSEGSQPRLAFEFLLY----SGLRCSDSCRAGVQHLQN----------------- 219 + S + + L+ +G+R ++ + + Sbjct: 178 KVISLIYKEDYYQHFLFISLWFLFMTGMRIGEATAIQWEDIDFDSGVLTINKTLYYKNQS 237 Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET-----FFINNDKQKMNATQFSIWFK 274 N ++ + ++ + L + L+ ++ F ++ + S + Sbjct: 238 NYRFVEPKTKASVRHIVLDKCTLTYLSEWKEVQQNLIQTDFVMSYNGIPTQKHTLSYAIE 297 Query: 275 AKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 A AG+++ HG+R A++ G + G + ++ Sbjct: 298 RYAKLAGIHRIRIHGLRHSHASLLISMGENPLIIKDRLGHEDIETT 343 >gi|290243122|ref|YP_003494792.1| integrase family protein [Thioalkalivibrio sp. K90mix] gi|288945627|gb|ADC73325.1| integrase family protein [Thioalkalivibrio sp. K90mix] Length = 322 Score = 98.3 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 35/281 (12%), Positives = 81/281 (28%), Gaps = 31/281 (11%) Query: 89 VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--------SRKHTPSSAIQFLTSM 140 S+ + E + G + + +R G S++ +P++ +L+ Sbjct: 36 PASKRTGEKALRSVAASLGYESPDAVPWETLRRGDALDLRDELVSQELSPATQSLYLSVF 95 Query: 141 RVLFKWAV---------RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 R + Q + +P+ + + G + Sbjct: 96 RGVMHEVWVAGRISGDEFQHIREVKAAKGKRQPRGRAVAEDEMDCFTQHLERDRTPIGIR 155 Query: 192 PRLAFEFLLYSGLRCSDSCRAGV-QHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250 L +G+R S+ + + + K T + D L Sbjct: 156 DAALVNVLYSTGMRRSEVVDLRIGDLVPEEKAVLIRGKGNRERTGYMDDVAWDALNHWID 215 Query: 251 G-----------KETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATISA 298 + ++M+ + + ++ +A + + H +R+ AT Sbjct: 216 EVRGERDGPLFLPMARGGHIQWRRMSDQAVAKVVRERSMEAAMPPTLPHDMRRSFATQLL 275 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRI-RLGIKNSRR 338 D G + G +V + Y + +D R + RR Sbjct: 276 DNGTDLLTVQRLMGHSSVTTTQIYDRRSDAASRAAVDGLRR 316 >gi|154492472|ref|ZP_02032098.1| hypothetical protein PARMER_02106 [Parabacteroides merdae ATCC 43184] gi|154087697|gb|EDN86742.1| hypothetical protein PARMER_02106 [Parabacteroides merdae ATCC 43184] Length = 406 Score = 98.3 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 43/270 (15%), Positives = 86/270 (31%), Gaps = 18/270 (6%) Query: 84 WGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVESRKHTP-----------S 131 + LA I ++ + R G + ++ R +E + P + Sbjct: 134 FKELADRKNIKWQHVYKHFERFVNGKCTFEEVDVDLCRKFMEYLLNAPQSIHTNQKLHIN 193 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 SA + ++ R + A R + + NP ++R + ++E++ + E Sbjct: 194 SAAGYWSAFRAVLHTAYRDKKIKENPNGFLDRIECIPTMREHLSQEELIRLAETPCEEDV 253 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251 + AF F +GLR SD + Q +Q T + + Sbjct: 254 LKRAFLFACLTGLRKSDIRQLTWQQIQPYTNGK--MFVTTRMQKTKQIVHNPISDEAYGL 311 Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMA 309 + K AG+ K + H R ++ + G + A Sbjct: 312 LGERHEGLIFEGFKDKMLQGPLKRWLLAAGITKKITFHCTRHSFGSLHVEMGTDMAVIQA 371 Query: 310 TYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 G K + + Y+K A + + +I Sbjct: 372 YMGHKNITTTQIYSKMAAQQ--MCEVVDKI 399 >gi|265767465|ref|ZP_06095131.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|263252770|gb|EEZ24282.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] Length = 271 Score = 98.3 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 38/248 (15%), Positives = 76/248 (30%), Gaps = 14/248 (5%) Query: 108 DFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165 + + IT I V+ + A + + ++A+ + + +PC V Sbjct: 25 NIKPKFITKDMIVQFVDYLQSRSVGEGAKSIYQRFKKVIRYAIEHDVILKDPCKEVICKV 84 Query: 166 RKTEGIRP---WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222 + + + +E R AF F LY GLR D +++ + Sbjct: 85 DDPMLRKDVLSLEEIQSLINCHYENENPMVRRAFIFCLYFGLRFCDVKDLTYKNVDYSNK 144 Query: 223 SIKTQKTGTIITVELPDGFMKLLA-----MTPIGKETFFINNDKQKMNATQFSIWFKAKA 277 +K ++ T + L + S + Sbjct: 145 LLKFEQNKTKGHSSASGVVIPLNDGLLSIIGEAPANGNKDVLIFDLPTYESCSKSLRRWV 204 Query: 278 TKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 +AG++K S H R A + GA + G + + YT+ D +L + Sbjct: 205 KRAGIDKHISWHCARHSFAVNILNNGANIKTIAGLLGHSGLKHTKKYTRAVD--KLKEEA 262 Query: 336 SRRISSVV 343 + + Sbjct: 263 INSLPELK 270 >gi|320161781|ref|YP_004175006.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1] gi|319995635|dbj|BAJ64406.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1] Length = 288 Score = 98.3 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 47/267 (17%), Positives = 86/267 (32%), Gaps = 14/267 (5%) Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 K T+K L+ + +S G ++ ++ + Y ++ GD + ITT + + Sbjct: 3 TNKTPTVKELVDVFLESQK-GFISDSTLRWYVFYLRPLVAHLGDRETNSITTSDLINLFH 61 Query: 125 SRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + P + F+ + LF+WAV + Y+A+NP + RP + ED+ + Sbjct: 62 LMRTDDREPYTLFNFIRGWKRLFRWAVDEGYIAMNPAKKLRRPPLPQKSPAGIQAEDLSK 121 Query: 182 FKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS----IKTQKTGTIIT 234 S+ + F+ +G+R V L N K + Sbjct: 122 MLDAASKTGTPERDLALVLFVADTGVRLGGVAGLTVDRLDINKRRAIVLEKGRGGQKERV 181 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKF 292 V L + + FK A K+ + + H R Sbjct: 182 VFFSSRTAIALENWLEKRGETEDQRVFL-LKPNGIYQLFKRLARKSEITGKWNPHSFRHA 240 Query: 293 SATISADAGATAHELMATYGWKTVDQA 319 A G + + G V Sbjct: 241 YARKLLAEGVSIGIVSHLMGHSNVQVT 267 >gi|307292243|ref|ZP_07572107.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0411] gi|306496749|gb|EFM66302.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0411] Length = 348 Score = 98.3 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 34/325 (10%), Positives = 90/325 (27%), Gaps = 25/325 (7%) Query: 16 TRHGKIIYYFR-KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 R HG+ +L S + + R TT Sbjct: 6 KRGNSYRAQISLYNHGQHKKLTKSFSSKKEATRWALENELEKGNGKQLAER--TTTFADF 63 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSS 132 + + + +++ + + GD + + ++ ++ H+ + Sbjct: 64 FENWIHIIKKNDVKETTFQNYQRTSQVVKKLFGDIQLKDLNDIVVQRKIDKYAETHSRKT 123 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 + L ++ + A + Y+A + V+ + + + + + Sbjct: 124 THEVLLKIKTALRDAYARGYLATDFANLVKTRGKVLDKRNRALSITELKKLRTYVINHRE 183 Query: 193 R---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-----------QKTGTIITVELP 238 + L +G+R + + L ++ + + + + Sbjct: 184 NEFNILVLLALETGMRRGELLGIRPEDLFEYGIHVRRSLSPTSEDTSLKTKNSRRDISIN 243 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATIS 297 +L PI +F + D + +A K + K+ HG+R A+ Sbjct: 244 QEVYDILKSVPIKDNGYFFDPDGFQQSAK-----LARLLKKLDIPKTTFHGLRDTHASFL 298 Query: 298 ADAGATAHELMATYGWKTVDQAETY 322 + G + + Y Sbjct: 299 FSQDIDIAYVSKRLGHINIQTTQNY 323 >gi|149003143|ref|ZP_01828052.1| DNA-damage-inducible protein D [Streptococcus pneumoniae SP14-BS69] gi|237651082|ref|ZP_04525334.1| integrase [Streptococcus pneumoniae CCRI 1974] gi|237821195|ref|ZP_04597040.1| integrase [Streptococcus pneumoniae CCRI 1974M2] gi|147758884|gb|EDK65880.1| DNA-damage-inducible protein D [Streptococcus pneumoniae SP14-BS69] Length = 388 Score = 98.3 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 51/386 (13%), Positives = 117/386 (30%), Gaps = 56/386 (14%) Query: 11 VTKERTRHGKIIYY------FRKGHGRRIRLP-YPHESTFIPAYMSALTGSTPKREYINS 63 +T+ + + G I+Y G++++ + A K Sbjct: 3 ITEYKKKDGSIVYRSSIYLGTDTVTGKKVKTTISGRTKRELKAKALQAQIDFEKDGSTVY 62 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSG 122 + T L+ + ++ ++ ++ + + ++ G++ K+T I+ Sbjct: 63 KAVEIKTYAELVENWLETY-CHTVKKSTLMGTKFKIDKYLLPAFGNYRLDKLTPPIIQKQ 121 Query: 123 VESRKHTPSSAIQ-------FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 V + + + + + K+AV + + NP V P+RK + + Sbjct: 122 VNQWAKDYNQLGKGFQEYPLLHSLNKRILKYAVSLQAIPFNPARDVIVPRRKEKEGQKLK 181 Query: 176 KEDMQQ---------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI---FS 223 D + + ++ LL +GLR + + Sbjct: 182 YLDDDNLKKFLTYLEQLPNTYKNFYDTVLYKTLLATGLRIRECLALKWSDIDLKNGTLDV 241 Query: 224 IKTQKTGTIITVELPDGFMKLLA---------------------MTPIGKETFFINNDKQ 262 KT IT ++++ + E F N+ + Sbjct: 242 NKTLNIIKEITGPKTKSSIRVIDLDNKTVLMLRLYKARQSQIGKEMGLTYEKVFSNSFDK 301 Query: 263 KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE- 320 ++A S +AG + + H R A+I +AG E+ G + Sbjct: 302 HIDARMLSFRLVKHLERAGCPRFTFHAFRHTHASILLNAGLPYKEIQTRLGHAKLSMTMD 361 Query: 321 TYTKGA-DRIRLGIK----NSRRISS 341 Y+ + D + ++ S Sbjct: 362 IYSHLSKDNQKNATSFYEKAIEKLKS 387 >gi|152996970|ref|YP_001341805.1| phage integrase family protein [Marinomonas sp. MWYL1] gi|150837894|gb|ABR71870.1| phage integrase family protein [Marinomonas sp. MWYL1] Length = 283 Score = 98.3 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 38/249 (15%), Positives = 84/249 (33%), Gaps = 18/249 (7%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMR 141 +V+++ ++ ++ R ++ I+ + R + SS Q L ++ Sbjct: 16 GFSVSTQRAYLYQLTEVARYF-RMPPDRLNQTDIQQYLLYLIRERGWSWSSCRQALHALN 74 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201 L++ + +++ + ++ I D Q + + +A Sbjct: 75 FLYRKVANKTMPSVSLPHPNK-----SQKIPDLLYPDEVQAMIRCCQHPKVYVAMVLAYT 129 Query: 202 SGLRCS--DSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259 +G+R S + R L ++ ++ K V P ++L E + Sbjct: 130 TGMRISEVNELRVNDLDLTHHCIKVRQGKGQQDRYVLFPQSLQQVLGRYWQRYEPCDVVV 189 Query: 260 D----KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGW 313 + +++ + K A +AG+ K H +R A AG L A G Sbjct: 190 YGLDKHRPLHSKYLRLETKEAAKRAGIQKCIRFHSLRHAFACHQLLAGMPLLRLQALLGH 249 Query: 314 KTVDQAETY 322 K + Y Sbjct: 250 KQIQTTFRY 258 >gi|169350275|ref|ZP_02867213.1| hypothetical protein CLOSPI_01019 [Clostridium spiroforme DSM 1552] gi|169293058|gb|EDS75191.1| hypothetical protein CLOSPI_01019 [Clostridium spiroforme DSM 1552] Length = 317 Score = 98.3 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 34/291 (11%), Positives = 79/291 (27%), Gaps = 37/291 (12%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR--- 126 + E+ + S+ ++ +E+ + + ++ + + +I+ K + S Sbjct: 6 FNEVAKEWLIIKKF-SIKYSTYTKYETIITNHLNKQFNNMNINEISEKIVISYFNDLLNN 64 Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + S+ ++ + +A ++ N ++ K+ I+ T + +Q + + Sbjct: 65 KIYATSTIKTLRYVLKAILDYAQKKYNFNNNSFQYIK-LKKSKPVIKILTLKQKKQLEQY 123 Query: 186 WSEGSQPR-LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------------ 232 + L LY G R + + I +T Sbjct: 124 CFNHQKNYTLVIILSLYGGFRLGEVAGLKWCDVDFENHCISINRTIERLKTTNSNSKTTL 183 Query: 233 -----------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMN-----ATQFSIWFKAK 276 V +P+ + L + N + F Sbjct: 184 MALDPKTHTSKRIVPMPEFIIDFLIKYYKKQSNPKKQNYIYTNSIKIPDPRNIQYHFHKI 243 Query: 277 ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA 326 + H +R AT L G V E Y + Sbjct: 244 CNTLEFKCNYHTLRHTYATNCVMNDIDIKSLSEMLGHSNVSITLELYVHSS 294 >gi|150019809|ref|YP_001312063.1| phage integrase family protein [Clostridium beijerinckii NCIMB 8052] gi|149906274|gb|ABR37107.1| phage integrase family protein [Clostridium beijerinckii NCIMB 8052] Length = 323 Score = 98.3 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 42/286 (14%), Positives = 84/286 (29%), Gaps = 22/286 (7%) Query: 57 KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKI 114 K + T+ EY + + S E ++ ++ K D D KI Sbjct: 5 KLRAFREVKNYTRTVSDCYMEYMNYCKYRGQREGTIKSKEGFYKYVLPKMISVDEDITKI 64 Query: 115 TTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 T + V S + F+ ++ + +++Y+ + P E Sbjct: 65 TESMVLIHVNSMIDRGLKGGTYSTFVVKLKAFLTYCFKRKYLQEFEV---KIPNVVLEKK 121 Query: 172 RPWTKEDMQQFKSFWSEGS------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225 +T++++ + + + + + F + +G R V+ + SI Sbjct: 122 AVYTEDEINILLTKPNLNTCVIGDYRSYVMIAFFVGTGCRSETILNVRVKDINFEKDSIL 181 Query: 226 TQKTGTIITVELPDGFM---KLLAMTPIGKETF----FINNDKQKMNATQFSIWFKAKAT 278 T +P +LL F D +M+ FK Sbjct: 182 FSHMKTKRQATVPMSKFLRGELLEYINNMNLKHNDLLFPKIDGTQMSYDTMHQNFKNYFK 241 Query: 279 KAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + + R AT+ G + L T+ E Y Sbjct: 242 HCNIKMHGVNTFRNTFATMFIKNGGDIYRLKLLLNHSTIKTTERYI 287 >gi|226948714|ref|YP_002803805.1| phage integrase [Clostridium botulinum A2 str. Kyoto] gi|226841697|gb|ACO84363.1| phage integrase [Clostridium botulinum A2 str. Kyoto] Length = 349 Score = 98.3 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 38/295 (12%), Positives = 89/295 (30%), Gaps = 23/295 (7%) Query: 52 TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFD 110 + + L++ Y + + + D +I D + Sbjct: 39 AKDYERDFLNKQKNDPGINFENLVNIYLDDIK-NKIRFTTFRQKKLIVDLKIAPYFKDIN 97 Query: 111 YRKITTKHIRSGVESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167 IT HIR ++ + + +F +A+R ++ NP + +K Sbjct: 98 LNNITPNHIRKWQNKIMENDYSDTYLRTINNQLSAIFNFAIRYYNLSSNPVVKAGPMGKK 157 Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227 + + + + + + +LAF+ L ++G+R + + + + I Sbjct: 158 NADVMQFWTVEEFKTFIEYVKKPIYKLAFKILFWTGIRSGELLALTYKDIDLDRKIININ 217 Query: 228 KTGTI----------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271 K V + D + + N + + Sbjct: 218 KNYARINKKDIINPPKTLKSKREVTISDFLCEDIKEYKNKIYNLNENERIFTIAKQNINA 277 Query: 272 WFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 K+G+ K H +R A++ + G T + G + ++ TY+ Sbjct: 278 QLNRTCKKSGIKKIRLHDLRHSHASLLIELGFTPLLISERLGHENIETTLNTYSH 332 >gi|218295944|ref|ZP_03496724.1| integrase family protein [Thermus aquaticus Y51MC23] gi|218243682|gb|EED10210.1| integrase family protein [Thermus aquaticus Y51MC23] Length = 391 Score = 98.3 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 56/373 (15%), Positives = 116/373 (31%), Gaps = 55/373 (14%) Query: 13 KERTRHGKIIYYFRKGHGRRI------------RLPYPHESTFIPAYMSALTGSTPKREY 60 K R + G ++Y G G+ + +L AL ++ Sbjct: 2 KRRGKGGGSVFYHE-GKGKWVAQLTWVDPATGRKLKREKHCATRKEAEQALAQMVAEQAR 60 Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR---------KSGDFDY 111 T + EY + L NS + + G Sbjct: 61 GVLMDPSRLTTRDFALEYLRRLEREGLRPNSIRLAQGELAYALPSLKDPKAHDPLGRMRL 120 Query: 112 RKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168 +++ H+R+ V+ + P + + L ++ LF+ A+R E VA NP +++ K Sbjct: 121 QEVKPVHVRAAVDRVIEAGYAPRTVARVLMRLKALFREALRLELVARNPAEAIQVRLPKG 180 Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225 E + + +E S+ R L +L +GLR ++ + ++ Sbjct: 181 EKAARALEPEEVARLLEAAEASRSRDMALLLRLMLETGLRRGEALALQWGDVDLERGEVR 240 Query: 226 TQKTGTIITVELPDGFMK-------------------------LLAMTPIGKETFFINND 260 + + + +K L + P + + Sbjct: 241 VWRAWAKVGSKGAFTPLKTPTAKRVVPLPLGLLRRLKARKEELLERLNPEEVDGLHLVGG 300 Query: 261 KQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-Q 318 + ++ F+ + + A KAG+ + H +R AT++ G + G + Sbjct: 301 VKPVDPDAFNHYLRRLAEKAGLGRVRVHDLRHTWATLALSRGIPLEVVSERLGHASPTIT 360 Query: 319 AETYTKGADRIRL 331 Y + R Sbjct: 361 LNVYRHLLEEERR 373 >gi|154499004|ref|ZP_02037382.1| hypothetical protein BACCAP_02996 [Bacteroides capillosus ATCC 29799] gi|150271844|gb|EDM99070.1| hypothetical protein BACCAP_02996 [Bacteroides capillosus ATCC 29799] Length = 327 Score = 98.3 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 26/257 (10%), Positives = 68/257 (26%), Gaps = 12/257 (4%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD---YRKITTKHIRSGVESRKHTPSSAI 134 + + + + + ++ + K++ +RK + + Sbjct: 56 FINAKRIEGCSEKTLSYYRQTIVSMLSGIDKEPQEIVTEDLRKYLTEYQANRKSSKVTID 115 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194 + F W ++Y+ +P + + K +T E ++ + + Sbjct: 116 NIRRILSSYFSWLEDEDYIVKSPVRRIHKVKTAKVIKETYTDEALEIMRDNCC-NVRDLA 174 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKE 253 + L SG+R + + N V L + Sbjct: 175 MIDLLASSGMRVGEMVALNRDDINFNERECVVFGKGSKERIVYFDARTKIHLLNYLESRT 234 Query: 254 TFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHE 306 ++ + + + + H R+ AT + D G + Sbjct: 235 DTCSALFVSLTAPHDRLQIGGVERRLRELGKRLHLPRVHPHKFRRTLATSAIDKGMPIEQ 294 Query: 307 LMATYGWKTVDQAETYT 323 + G + +D Y Sbjct: 295 VQQLLGHQKIDTTMHYA 311 >gi|115345577|ref|YP_771759.1| tyrosine recombinase [Roseobacter denitrificans OCh 114] gi|115292898|gb|ABI93351.1| tyrosine recombinase [Roseobacter denitrificans OCh 114] Length = 302 Score = 98.3 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 35/279 (12%), Positives = 95/279 (34%), Gaps = 26/279 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGV----ESRKHTPSSAIQFLTS 139 + ++ ++ R + ++ ++ I + + P+S + L + Sbjct: 17 RGVGNHTLRAYAQDLRTFARFTKEYHLADPLSKDDILAYHSHLRDELHAKPASIERRLVT 76 Query: 140 MRVLFKWAVRQEYVAINPCLSVER-PKRKTEGIRPWTKEDMQQFKSFWSEGSQPR----- 193 ++ F W + +P V + RP +E ++ + + + Sbjct: 77 LKSYFAWRADRNSALPSPFADVRISVRIPRRLPRPVDRETLKAVLQSETGPTGAQPADQE 136 Query: 194 ---LAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLAMTP 249 L + L+ +GLR S+ + + + I K V +P+ ++ + Sbjct: 137 VTILMIKLLIVTGLRISELTTLKICDVTADASQMIVRGKGNKERMVFVPNAELQEMFRRY 196 Query: 250 IGKETFFI--------NNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISAD 299 N +++ + F + + + G+ + + H R +AT+ + Sbjct: 197 CADRVRHDSLKSPLFLNAVGRRLRSQTFRKRLRVLSHRLGITPHLTPHRFRHSAATLLIE 256 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRI-RLGIKNSR 337 G + A G ++ E Y + ++ R ++ + Sbjct: 257 EGTDIRMVQALLGHASLRTTEIYVRVSNHALRRALERAD 295 >gi|194466460|ref|ZP_03072447.1| integrase family protein [Lactobacillus reuteri 100-23] gi|194453496|gb|EDX42393.1| integrase family protein [Lactobacillus reuteri 100-23] Length = 365 Score = 98.3 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 36/360 (10%), Positives = 89/360 (24%), Gaps = 34/360 (9%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 R K R + + +K Sbjct: 5 VKRGKKWQARISWYDDENKRHFKTKSNFPTKKLAQIWAADNENKLNKGIDIEKSVVFTDY 64 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS--S 132 ++ ++ +A + + + G ++IT + + T + + Sbjct: 65 YDQWVETYKSPKVADVTLARYNITSGALKSFFGKTKIKEITRDTYQQFINEYGATHASHT 124 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE--GIRPWTKEDMQQFKSFWSEGS 190 +R + A+ +Y+ + VE + + +K++++ E Sbjct: 125 VKMVNGIVRACVRSAILDDYLIKDFTQGVELISNPDKTLKVEYLSKKEIEALLKAAVEND 184 Query: 191 QP-----RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--------------- 230 R +Y+G+R S+ + +I K+ Sbjct: 185 DRSMYASRYMIATAIYTGMRLSEIQALTWNDINWLKQTISITKSWDANKHDFKPTKNKSS 244 Query: 231 -TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SA 286 I V + F+ + + K ++ ++K Sbjct: 245 VRTIKVNQNLLNLLSRLRQRHISNMVFMTQFGSIPTSNAVNKVLKKLLSQLKIHKEGFHF 304 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLG-----IKNSRRIS 340 H +R + G + + G + TY D + I ++ Sbjct: 305 HSLRHSHVALLLADGVDIYAISKRLGHSEISTTTNTYAYLIDEYKSKTDEEIINALEKLE 364 >gi|325288106|ref|YP_004263896.1| integrase family protein [Cellulophaga lytica DSM 7489] gi|324323560|gb|ADY31025.1| integrase family protein [Cellulophaga lytica DSM 7489] Length = 364 Score = 98.3 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 60/362 (16%), Positives = 115/362 (31%), Gaps = 40/362 (11%) Query: 13 KERTRHGKIIYY---FRKGHGRRIRLPY-----PHESTFIP----AYMSALTGSTPKREY 60 ++R ++ KI Y + KG + L P T A T ++ Sbjct: 6 RQRKKNDKISLYLDYYHKGKRKTEYLRLYLTPNPKTKTEREVNKKTKQLAETICAQRQIE 65 Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNS----RISFESYFDQIIRKSG-DFDYRKIT 115 I + ++ L + + N+ ++ S + + D ++ I Sbjct: 66 IQNGIYGFQDIEKLKGSFITYITALAEKKNTSSGNYGNWNSMLKHLKKFCPTDVSFQDID 125 Query: 116 TKHIRSGVESR----------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165 + E + + +S + K AV+ + +NP VE K Sbjct: 126 KSFVERFKEYLDKEAIGRAGKQLSQNSKYSYYGKFSAALKQAVKDGILKVNPANGVEYFK 185 Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225 + T +++Q+ + E + AF F +GLR SD + +Q++ Sbjct: 186 QGEPQREFLTLDELQKAVNTECELPILKNAFIFSALTGLRWSDIEKLIWSEIQHSKEMGY 245 Query: 226 TQKTGTIITV-----ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280 + T + D LL + F + + W A Sbjct: 246 YIRFRQKKTKGVETLPISDQARNLLGEKGNPDDKVFDGLHYSAWSNLKLQQWMMK----A 301 Query: 281 GVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338 G+ K+ H R AT+ G + + G K + + Y K D + + + R Sbjct: 302 GITKTITFHCARHTYATLQLTLGTDIYTVSKLLGHKELRTTQIYAKVIDDKK--KEAANR 359 Query: 339 IS 340 I Sbjct: 360 IQ 361 >gi|325678006|ref|ZP_08157645.1| site-specific tyrosine recombinase XerC [Ruminococcus albus 8] gi|324110286|gb|EGC04463.1| site-specific tyrosine recombinase XerC [Ruminococcus albus 8] Length = 326 Score = 98.3 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 34/246 (13%), Positives = 93/246 (37%), Gaps = 18/246 (7%) Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWT 175 +++ + R++ ++ + TS++ +++ A + ++ + S+E P K + T Sbjct: 81 QYMVWLKDERQNGVAARARKTTSLKQFYEYLANKSHLISKDNISSLEVPNVKRALPKYLT 140 Query: 176 KEDMQQFK--SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTI 232 +++Q + L G+R S+ C + + +++ K Sbjct: 141 LDEVQTLLSSIRTKNTERDYCIITLFLNCGMRLSELCGININDIAFENKTLRLLGKGRKE 200 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINND---------KQKMNATQFSIWFKAKATKAGVN 283 + L D +K + ++ + + + K +++ + + AG+ Sbjct: 201 RIIYLNDNCIKAIEQYLPYRKNYEMAQNEKALFLSSRKNRISRRRVQKIIEECIFAAGLK 260 Query: 284 ---KSAHGVRKFSATISADA-GATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRR 338 + H +R +AT+ + G + G ++ E YT G+D+++ + Sbjct: 261 NTGVTTHKLRHTAATLMYNNNGGDILAVKEILGHESTSTTEIYTHLGSDKMKNTMNVMED 320 Query: 339 ISSVVD 344 + D Sbjct: 321 LLKKKD 326 >gi|253564012|ref|ZP_04841469.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5] gi|251947788|gb|EES88070.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5] gi|301161685|emb|CBW21225.1| putative integrase/transposase [Bacteroides fragilis 638R] Length = 393 Score = 98.3 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 43/270 (15%), Positives = 86/270 (31%), Gaps = 18/270 (6%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 I+ +R SL +++ + S + + D + ++T + I S + Sbjct: 107 FIAFFRNEIAKSSLKESTKRNHLSTLELLRSYKKDVSFSELTFEFISSFDHYLQQKGYHT 166 Query: 134 IQFLTSMRVLFKWAV----RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 M+ L + ++ + K + E++ + +S G Sbjct: 167 NTIAKHMKHLKRHINVAINKEYMEIQKYAFRKYKIKSVENNHTHLSPEELGKIESLELGG 226 Query: 190 SQPRL-----AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 +L AF F Y+GLR SD +++ + Sbjct: 227 RFTKLEKTKDAFLFCCYAGLRYSDFTNLSPENIVKMHQET--WLIYKSVKTNTEVRLPLY 284 Query: 245 LAMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297 L K + + + + + + A +G+NK S H R +AT+ Sbjct: 285 LLFEGKGIEVLNKYQDDLADFFKLRDNSNVNKELLIIAKLSGLNKRISFHTARHTNATLL 344 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGAD 327 +G + G K+V + YT D Sbjct: 345 IYSGVNITTVQKLLGHKSVKTTQVYTNIMD 374 >gi|284023378|ref|ZP_06377776.1| putative integrase [Staphylococcus aureus subsp. aureus 132] Length = 404 Score = 98.3 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 44/402 (10%), Positives = 109/402 (27%), Gaps = 73/402 (18%) Query: 12 TKERTRHGKIIYYF--RKGH---GRRIRLPYPHES----TFIPAYMSALTGSTPKREYIN 62 +E T++ Y + R G+ + + A + + ++ + Sbjct: 3 VREITKNNSTAYRYLERYTDPLTGKYKTVSVTRNKNNVRSQKDAQLELNKIIEQRLKHYS 62 Query: 63 SPRKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDF-DYRKITTKHIR 120 + + + T E+ + + +S + + KIT +++ Sbjct: 63 TKQLENLTFHDACDEWLEHYKTHSGSKPTTIKEKKSNANTVKNAIDSKVLISKITHTYLQ 122 Query: 121 SGVESRKHTPSS--AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK-- 176 + + + S + +R +FK+A + + L +K + Sbjct: 123 NIINEWAKSHSIGHVQSLVIVIRSVFKYAFKYYDLHDISVLDKIDIPKKAQTRNELQAKR 182 Query: 177 -------------EDMQQFKSFWSEGSQPR------LAFEFLLYSGLRCSDSCRAGVQHL 217 + ++ R EF + +G+R + ++ Sbjct: 183 NNYLEDSEVKELLQCFDYLIKHKRHATRKRNYEMVKALVEFQINNGMRIGELLAIKTDNV 242 Query: 218 QNNIF---------------------SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF 256 T+ + + T+ L + LL + + Sbjct: 243 DVENKTLEIDGTINWVTDVETGAFGVKETTKTSKSYRTIGLTAQSINLLKKLMLENKKEN 302 Query: 257 INNDKQ-------------KMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAG 301 NDK ++ + + K + +NK H +R + A G Sbjct: 303 QWNDKFIDRGYIFTNTAGSPIDLNKVNNIIKEATDISSINKRVTTHTLRHTHISTLAQLG 362 Query: 302 ATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSV 342 + G E YT D ++ ++ + Sbjct: 363 INLKAIQDRVGHSDYKTTLEIYTHVTD--KMAQDMMNKLEGI 402 >gi|260641922|ref|ZP_05413998.2| integrase [Bacteroides finegoldii DSM 17565] gi|260624125|gb|EEX46996.1| integrase [Bacteroides finegoldii DSM 17565] Length = 436 Score = 98.3 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 38/295 (12%), Positives = 90/295 (30%), Gaps = 28/295 (9%) Query: 69 TTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKSG------DFDYRKITTKHI 119 TL L+ + A + ++ + + D + ++ + I Sbjct: 135 MTLLKLLDRHNGEMKARVGVDRAPTTLSTYLFTYRTLSEFIKAKFKVSDLAFGQLNEQFI 194 Query: 120 RSGVE----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 R + + H + +L ++ + + A ++ + + PK+K + + Sbjct: 195 RDYQDFILMEKGHAVDTLRGYLAILKKICRIAYKEGHSEKYHFCHFKLPKQKESTPKALS 254 Query: 176 KEDMQQFKSFWSEGSQ-----PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230 +E+ ++ + + R F F Y+G +D ++L + + K Sbjct: 255 RENFEKLRDLEIPEKRRSHVITRDLFLFACYTGTAYADVVSITRENLFTDEENNLWLKY- 313 Query: 231 TIITVELPDGFMKLLAMT---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285 G +KLL + K+ AG+ + Sbjct: 314 -RRKKTNYLGRVKLLPEALVLIEKYRDDARMTLFPPQDYHTLRANMKSLRLMAGLSQDLV 372 Query: 286 AHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 H R A++ + G + G + + Y + RL ++ R Sbjct: 373 YHTARHSFASLITLEEGVPIETISKMLGHSNIKTTQIYARVTP-KRL-FEDMDRF 425 >gi|152984624|ref|YP_001346111.1| integrase [Pseudomonas aeruginosa PA7] gi|150959782|gb|ABR81807.1| integrase [Pseudomonas aeruginosa PA7] Length = 394 Score = 98.3 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 43/322 (13%), Positives = 83/322 (25%), Gaps = 46/322 (14%) Query: 30 GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAV 89 G RIR + + + G + E+ P + L L+ + S H +L Sbjct: 22 GPRIRKKL-RTKNEALNFQNRIMGDGARGEFEKRPARDERRLSELVRLWF-SLHGQNLK- 78 Query: 90 NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---------------------KH 128 + + + + GD + R Sbjct: 79 -TGAERLRLLEAMAERMGDPKAYRFDAAMFAQYRAERAEGQHVRSSVGRGRRKGAAGKGV 137 Query: 129 TPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-W 186 ++ L + +F R E+ NP SV K + + + Sbjct: 138 GANTLNHELAYLSAVFSELSRLGEWRGDNPLASVRPLKFDDAEMVCLELDQVDALLDELN 197 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246 + S L E L +G R ++ V+ + + K+ +V + + L Sbjct: 198 TRDSAAGLIAEVCLSTGARWGEAESLQVRQVHGGMVHYSRTKSSKNRSVPISKDLERRLL 257 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS----AHGVRKFSATISADAGA 302 F+ G++ H +R A+ G Sbjct: 258 AALPF---------------RSGYNTFRRAVEAVGLDLPEGQLTHVLRHTFASHYMRNGG 302 Query: 303 TAHELMATYGWKTVDQAETYTK 324 L G ++ Y Sbjct: 303 DIITLQRVLGHASLQMTMRYAH 324 >gi|16762232|ref|NP_457849.1| bacteriophage integrase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143721|ref|NP_807063.1| bacteriophage integrase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|25301804|pir||AI0924 probable bacteriophage integrase [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504536|emb|CAD09419.1| probable bacteriophage integrase [Salmonella enterica subsp. enterica serovar Typhi] gi|29139356|gb|AAO70923.1| probable bacteriophage integrase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 350 Score = 98.3 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 43/330 (13%), Positives = 86/330 (26%), Gaps = 30/330 (9%) Query: 14 ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + GK + Y GRR+R A+ T + ++ TL Sbjct: 4 RKLTTGKWLCECYPAGRSGRRVR-KQFATKGEALAFERHTMEETESKPWLGESVD-RRTL 61 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----- 126 K ++ + K H SL + ++ ++ G+ +T+K + R Sbjct: 62 KDVVELWFK-LHGKSLTAG-QHVYDKLL-LMVDALGNPLATDLTSKMFAHYRDKRLTGEI 118 Query: 127 --------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 +P + + + +F R + L R E W + Sbjct: 119 YFSEKWKKGASPVTINLEQSYLSSVFSELSRLGEWSYPNPLENMRKFTIAEKEMAWLTHE 178 Query: 179 MQQFKSFWSEGSQPRLAFE--FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 + P LA L +G R ++ + + K ++ Sbjct: 179 QIVELLADCKRQDPILALVVKICLSTGARWREAVNLTRSQVTKYRITFVRTKGKKNRSIP 238 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296 + + + F + + + H +R A Sbjct: 239 ISKELYEEIMALDGFNFFTDCYFQ--------FLSVMEKTSIVLPRGQLTHVLRHTFAAH 290 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326 +G L G + Y A Sbjct: 291 FMMSGGNILALQKILGHHDIKMTMRYAHLA 320 >gi|311234339|gb|ADP87193.1| integrase family protein [Desulfovibrio vulgaris RCH1] Length = 359 Score = 98.3 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 40/305 (13%), Positives = 82/305 (26%), Gaps = 17/305 (5%) Query: 48 MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107 A + T+ + Y + + + S Y I G Sbjct: 54 QLASALRADAVRLSKQVVRANMTVGDAWTLYCRDWLASKSSYKTDRSL--YLKHIEPVIG 111 Query: 108 DFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPK 165 ++ T I + +P + + + ++ L++ Y P V + Sbjct: 112 SRRMDEVKTVDINELLRRMGDLSPQTRVHAVGLVKRLYRRMAGWGVYHGPTPTDGVVVKR 171 Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRL-AFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 +R + ++ + S L++GLR + VQH+ + I Sbjct: 172 VDNARMRFLSPKEARWLLEELDCRSPQFADVCRVSLFAGLRLREIFSLKVQHVNIDARVI 231 Query: 225 -KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK-QKMNATQFSIWFKAKATKAGV 282 + + ++LA +G+ K + F + Sbjct: 232 AVMDAKSGSRMASMTEDLARVLARYVVGRRPEEFVFTKASGEGMRTINQTFVRVVRDLEL 291 Query: 283 ---------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLG 332 H +R A+ G + + G V+ Y K A D R Sbjct: 292 NDGVDDARHKVVFHTLRHTFASWLVQRGVPLYTVADLMGHSVVEMTRRYAKLAPDTRREA 351 Query: 333 IKNSR 337 + Sbjct: 352 VNQLD 356 >gi|221195318|ref|ZP_03568374.1| phage integrase family protein [Atopobium rimae ATCC 49626] gi|221185221|gb|EEE17612.1| phage integrase family protein [Atopobium rimae ATCC 49626] Length = 355 Score = 98.3 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 43/341 (12%), Positives = 91/341 (26%), Gaps = 34/341 (9%) Query: 14 ERTRHGKIIYYFRKGH---GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 ++ GK GH G+R+R + A+ + ++ ++ Sbjct: 4 DKLPSGKWRVRVEMGHDSSGKRLRAQRVVPT---KKEAKAVEHMLSELHRTDALIRERIR 60 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 + +Y + + +++ ++ G +I HI+S + + T Sbjct: 61 FDDFVWQYYLPYTSERVRYTTLAAYKRDIGHLLPAFGHMMVDEIDKVHIQSLINT-SSTY 119 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-----PWTKEDMQQFKSF 185 A +R + +AV ++ INP + T + Sbjct: 120 KVAKNSRDCLRQILNYAVELGFIKINPARAKFDFPAPEIYPEEHNGTWLTTFEQHDLFLA 179 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------------- 232 + + +L E L GLR + + + + Q+T Sbjct: 180 KIDHPRFKLVAELGLGLGLRRGEIFGLDWEDIDLEKRIVHIQRTYARQEHKHELMSPKTK 239 Query: 233 ---ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF-----SIWFKAKATKAGVNK 284 + L L+ + W K Sbjct: 240 KSNRYIPLRKELAYYLSKEYELRGHPTGAVVVSPNKRRSNPVSTSQGWLKYLRENNLEEV 299 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 S +R AT +AG ++ G + Y + Sbjct: 300 SILNMRHSFATACMNAGMDVTKVSKLLGHTNITTTVSRYVR 340 >gi|150401987|ref|YP_001329281.1| phage integrase family protein [Methanococcus maripaludis C7] gi|159906222|ref|YP_001549884.1| integrase family protein [Methanococcus maripaludis C6] gi|150033017|gb|ABR65130.1| phage integrase family protein [Methanococcus maripaludis C7] gi|159887715|gb|ABX02652.1| integrase family protein [Methanococcus maripaludis C6] Length = 340 Score = 98.3 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 44/338 (13%), Positives = 106/338 (31%), Gaps = 32/338 (9%) Query: 33 IRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSR 92 ++ P H + + +E+ K + L+ E+ + + ++ + Sbjct: 3 VKFPKTHYGDIMDDITDMILLKKDSKEHTAPNDTKKLEIDKLVDEFSEQRRFDNIKEATI 62 Query: 93 ISFESYFDQIIRKS---GDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFK 145 + +R + +T + + R + ++ ++ ++V ++ Sbjct: 63 SNDNDRIRVFLRYIYYTLNKTPETLTNRDYMAFFTYVKRERNCSDNTVNKYFKLLKVFYR 122 Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPW------TKEDMQQFKSFWSEGSQPRLAFEFL 199 ++ + + S ER + I+ + T + + G++ R A Sbjct: 123 -LMKFKNFSDFVVESKERKRFSRFDIKHYDAIDEDTLNQVLVKLLKSNSGTKIRDATFIR 181 Query: 200 LY--SGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255 L +G R S++C L +F + KT TV +KLL Sbjct: 182 LLWDTGCRVSEACNLTYSASDLNKGVFKLTHTKTKQDRTVVCSKETLKLLNYFLQHDPDN 241 Query: 256 FINNDKQKM------NATQFSIWFKAKATKAGVNKS--------AHGVRKFSATISADAG 301 + K N S F+ + + + H +R A + G Sbjct: 242 SPEDHLFKSANGAKLNKYTLSARFRNIVKELKKDGTVPKNQWLVIHSLRHGRAVDLLNKG 301 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 + + G +++ Y+ +R + +I Sbjct: 302 VSIDVVKEYLGHASIETTLIYSHSTERKNKMLDQISKI 339 >gi|15802459|ref|NP_288485.1| putative integrase for prophage CP-933U [Escherichia coli O157:H7 EDL933] gi|15832027|ref|NP_310800.1| integrase [Escherichia coli O157:H7 str. Sakai] gi|168765371|ref|ZP_02790378.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. EC4501] gi|168789398|ref|ZP_02814405.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. EC869] gi|168802960|ref|ZP_02827967.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. EC508] gi|217329608|ref|ZP_03445687.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. TW14588] gi|261226506|ref|ZP_05940787.1| putative integrase for prophage CP-933U [Escherichia coli O157:H7 str. FRIK2000] gi|261254686|ref|ZP_05947219.1| putative integrase for prophage CP-933U [Escherichia coli O157:H7 str. FRIK966] gi|12516149|gb|AAG57039.1|AE005423_1 putative integrase for prophage CP-933U [Escherichia coli O157:H7 str. EDL933] gi|13362241|dbj|BAB36196.1| putative integrase [Escherichia coli O157:H7 str. Sakai] gi|189364882|gb|EDU83298.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. EC4501] gi|189371014|gb|EDU89430.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. EC869] gi|189375237|gb|EDU93653.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. EC508] gi|217317376|gb|EEC25805.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. TW14588] gi|320189647|gb|EFW64304.1| Putative integrase [Escherichia coli O157:H7 str. EC1212] gi|326340080|gb|EGD63885.1| Putative integrase [Escherichia coli O157:H7 str. 1044] gi|326346464|gb|EGD70200.1| Putative integrase [Escherichia coli O157:H7 str. 1125] Length = 340 Score = 98.3 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 57/335 (17%), Positives = 101/335 (30%), Gaps = 40/335 (11%) Query: 6 RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65 +LPP V + + P ES + A L K E + R Sbjct: 12 KLPPKVY---------------PNKYSVWKPTSRESVTLTAIEDGLAALWKKYEETVNHR 56 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 + T L ++ SA++ L+ ++ + + +++ G + +HIR ++ Sbjct: 57 DRAMTFGRLWEKFLASAYYSELSPRTQKDYLQHQKKLLAVFGKVLADSVKPEHIRRYMDK 116 Query: 126 RK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 R + + A +SM ++ W + YV NPC V + K K KE Sbjct: 117 RGEQSKTQANHEKSSMSRVYSWGYERGYVKANPCAGVSKFKAKNRERYVTDKEYQAVLSV 176 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 +A E R SD + + N+ I+ KTG Sbjct: 177 AP---LPVFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAA 233 Query: 245 LAMTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAGV------NKSAHGVRKFSATI 296 + N + F+ + AG + + H + Sbjct: 234 IEKAKQLPTSAYVISNQYGNRYMYKGFNEMWVEARNHAGKISGILTDFTFHDL------- 286 Query: 297 SADAGATA-----HELMATYGWKTVDQAETYTKGA 326 G + + G KT Q Y + Sbjct: 287 -KAKGISDYEGSSRDKQLFSGHKTEGQVLIYDRKV 320 >gi|146277760|ref|YP_001167919.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025] gi|145556001|gb|ABP70614.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025] Length = 332 Score = 98.3 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 50/321 (15%), Positives = 95/321 (29%), Gaps = 22/321 (6%) Query: 26 RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85 G R R T A + AL + TT++ L + Y Sbjct: 17 WWEDGARRRYRL-DARTRAEAEVEALDRIRRETLP-----AGATTVRDLWAAYLADRRGR 70 Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS--SAIQFLTSMRVL 143 + + S + ++ G +IT + RS ++R+ T S + L +R Sbjct: 71 PVE----RNMRSSGNAVLPHFGALRPDQITPEACRSYTKARRKTVSVGTVWTELGHLRTC 126 Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203 WA ++ + +ERP + R T ++ + E +LA LL + Sbjct: 127 LLWAAKRGLI--PVAPHIERPAKPAPRDRYLTHAEVSRLMEAECE-PHIKLAITVLLTTA 183 Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQK----TGTIITVELPDGFMKLLAMTPIGKETFFINN 259 R + I+ + + ++ Sbjct: 184 ARVGAVLELTWDRVDLERGQIRLRVDAEGPRKGRATVPINNTLRAALTAARAAALSDHVI 243 Query: 260 DKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 + F + AG+ + + H +R +A A+AG E+ G V Sbjct: 244 EWAGGPVKCIRKGFLRAVSNAGLSDVTLHTLRHTAAVHMAEAGVPMDEISQYLGHSNVQI 303 Query: 319 A-ETYTKGADRI-RLGIKNSR 337 Y + + + R Sbjct: 304 TSSVYARFSPQHLRKAADALE 324 >gi|254933695|ref|ZP_05267054.1| phage integrase [Listeria monocytogenes HPB2262] gi|293585259|gb|EFF97291.1| phage integrase [Listeria monocytogenes HPB2262] Length = 400 Score = 98.3 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 55/372 (14%), Positives = 107/372 (28%), Gaps = 59/372 (15%) Query: 13 KERTRHGKIIYYFRKG---HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 ++R+++ G G IR + L + E Sbjct: 15 EQRSKN-SWRMRVTVGYDYKGTPIRADRTTRTKNERERERELRNFITELEQNGYTAPARM 73 Query: 70 TLKWLIS-EYRKSAHWGSLAVNSR-ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127 T K + EY +L V + ++S + G KITT HI + V + Sbjct: 74 TFKAFVENEYMPKHAQNNLEVKTWTEYYKSIVARAYPAFGGVQMDKITTLHIVNLVAKLQ 133 Query: 128 H--------------------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167 +P S ++ +F+ AV + + INP V PK Sbjct: 134 KPGARLDVKPTDSDEKKNKPLSPRSIRNIYFAINSVFETAVEWKVIPINPAEGVRLPKTT 193 Query: 168 TEGIRPWTKEDMQQFKSF-WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226 +T +++ + E + ++ L SG R ++ V+H+ + Sbjct: 194 KRPPTIYTPAEIELLNAALVKEPLRLQVMIYIALISGCREAELAALEVKHVNLIEDELTF 253 Query: 227 QKT---------------------GTIITVELPDGFMKLLAM---------TPIGKETFF 256 ++T I L + ++ + F Sbjct: 254 EQTLVAKAGEGLLLKESTKNDVAGIVSIPAWLTNLIETYISNEVLDLKTEGKWTNHKFLF 313 Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKT 315 N + + + +K + + H +R SAT+ + G + K+ Sbjct: 314 ANMEGKPIRPDSIYQRWKRFLERHNLPVIRFHDLRHTSATLLLNKGRDIKIIQERLRHKS 373 Query: 316 VDQA-ETYTKGA 326 Y Sbjct: 374 SVTTSNIYAHVL 385 >gi|29348044|ref|NP_811547.1| putative integrase/recombinase [Bacteroides thetaiotaomicron VPI-5482] gi|29339946|gb|AAO77741.1| putative integrase/recombinase [Bacteroides thetaiotaomicron VPI-5482] Length = 330 Score = 98.3 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 35/304 (11%), Positives = 84/304 (27%), Gaps = 44/304 (14%) Query: 71 LKWLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFD--------YRKITT---- 116 + + Y + + N+ S+ Y+ Q + +T Sbjct: 10 VGYWFMRYLSEYIPVIKNQSHNTLTSYRDYYMQYLPFVAKRTGKHADKLLITDLTVERTN 69 Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW-- 174 + + T + Q LT+++ + + + K ++ Sbjct: 70 AFLNHIETDKGCTIQTRNQRLTAIKSFVHYVYNNAPEYMEWSRLMSTIPMKKVKVKVIEG 129 Query: 175 -------------TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221 + +G + FL +G+R S++ + + + Sbjct: 130 SVLPAVSYLDKREMDALLNTPDRQTVQGRKDYAMLLFLYNTGVRASEAASLTIGSIIYDD 189 Query: 222 FSIK----TQKTGTIITVELPDGFMKLLAMTP---IGKETFFINNDKQKMNATQFSIWFK 274 S K T L + + + E F+N M + Sbjct: 190 ASCPLVRIYGKGNKSRTCPLWNRTLNAIKPFMAGRRETERVFLNRYGNPMTRFGIYELLE 249 Query: 275 AKATKA--------GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 KA S H +R +A ++G + + G +++ YT+ + Sbjct: 250 RNVIKATATAPTLAKKRVSPHTLRHTAACHLYESGNDIVTIQSWLGHVSLNTTNIYTEVS 309 Query: 327 DRIR 330 +++ Sbjct: 310 LQMK 313 >gi|303251326|ref|ZP_07337504.1| hypothetical protein APP6_0527 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302649868|gb|EFL80046.1| hypothetical protein APP6_0527 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 305 Score = 98.3 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 30/290 (10%), Positives = 81/290 (27%), Gaps = 36/290 (12%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--- 126 + L+ ++ + L +++ S+++ + I ++ D I + + Sbjct: 6 SFNKLLEQFFFYRSY--LRPDTKRSYKNIINIIQQRFPDRSADSINNIDLITWRNEILDV 63 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 K P + ++ ++ ++ ++ + I+ ++++ + + S+ Sbjct: 64 KIKPVTWNNYVRHLKAIYNVGIKYNILQISNNPFYGLFIKESKRKKKTLSKKQLDKLSYA 123 Query: 187 SEGSQPRLAFEFLLY-----------SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 G+ + +G+R S + +Q + N I Sbjct: 124 LNGNIVLPEMLKPSWFINCLVMTLRCTGIRRSQLVQLQIQDVDLNRRIIYISPEINKNHD 183 Query: 236 ELPDGFMKLLAMT--------------------PIGKETFFINNDKQKMNATQFSIWFKA 275 L + + M+ Q + F+ Sbjct: 184 YHIVPISDNLYPHIELLVEELRKQKQPLDSQLFNFNLFSKVTRRKGKPMSVDQVTHIFRR 243 Query: 276 KATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 + G S H R AT + + G K + Y + Sbjct: 244 ISEVVGFTSSPHRFRHTVATSLMKNPENVYVVQKLLGHKDISVTLGYIEH 293 >gi|229163442|ref|ZP_04291393.1| Integrase/recombinase [Bacillus cereus R309803] gi|228620011|gb|EEK76886.1| Integrase/recombinase [Bacillus cereus R309803] Length = 332 Score = 98.3 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 30/316 (9%), Positives = 77/316 (24%), Gaps = 23/316 (7%) Query: 32 RIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNS 91 + R + L K+E T+ + + L + Sbjct: 3 KRRDSLTISEDLSNVFSDRLKNDQRKKETAEKRYTFNLTIDKALEIVVRQMKATGLRERT 62 Query: 92 RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQE 151 + + + + ++ HI + S + + + L ++ Sbjct: 63 INDYYLHVSHFTKITDTQYLEELNVNHIYEWLSSMNVSNQTKLTRLKCLKAFLGRCHDNG 122 Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQ---QFKSFWSEGSQPRLAFEFLLYSGLRCSD 208 ++ IN +V+ +E + A + +G+R Sbjct: 123 WIDINFWRNVKIKVDTPVKEGATDREINILLSVLDLTRFLDLRDATAILLMYQTGIRVGT 182 Query: 209 SCRAGVQH--------------LQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254 + +H ++N+ +++ +++ K Sbjct: 183 LAQLEHRHVDLDTKVLSIDGGIIKNHESIYLPFDDALARLLDVLMKQNEIIRSEYNVKND 242 Query: 255 FFINNDK-----QKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELM 308 + S A + G+ + H +R+ A GA + Sbjct: 243 YLFITKSGGSVLTSPTNNIISKRMTKHAKEYGLKNINPHAIRRGFAKNLLKKGANVALIS 302 Query: 309 ATYGWKTVDQAETYTK 324 G + Y Sbjct: 303 KALGHSDISVTTRYLH 318 >gi|160947471|ref|ZP_02094638.1| hypothetical protein PEPMIC_01405 [Parvimonas micra ATCC 33270] gi|158446605|gb|EDP23600.1| hypothetical protein PEPMIC_01405 [Parvimonas micra ATCC 33270] Length = 356 Score = 98.3 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 42/342 (12%), Positives = 89/342 (26%), Gaps = 33/342 (9%) Query: 18 HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77 G Y R + + H AL + + R + + Sbjct: 9 RGTWKIYLRYVDWQ--GMKQIHTKRGFATKREALE--YEREFLASKSRDLNMLFESFVEI 64 Query: 78 YRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR---------K 127 Y + N+ ++ + +II +IT I Sbjct: 65 YLNDLRPR-IKYNTYLTKVHIIETKIIPYFAKKSIAEITAPDILQWQNELLKKSDGEGKT 123 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV-ERPKRKTEGIRPWTKEDMQQFKSFW 186 ++ + + + A + + NP + K K + + WTKE+ ++F Sbjct: 124 YSQTYLRTIQNQLNAILNHASKYYGLTSNPAHKTAKMGKSKAQEMLFWTKEEYEKFAESV 183 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------------- 232 AFE L + G+R + + K+ Sbjct: 184 KSKPASYYAFEILYWCGIREGELLALTKDDFDLEKKILTISKSFQRLKGKDYITSPKTEK 243 Query: 233 --ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGV 289 T++LP ++ + + +GV + H + Sbjct: 244 SNRTIQLPQFLCDEMSDFFGMYYHLNAKSRLFNFTKSYLHHEMDRGCKLSGVKRIRVHDL 303 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 R + G + + G +++ Y +L Sbjct: 304 RHSHVAYLIEQGFSPVVIAERLGHESISITLNYAHLYPSKQL 345 >gi|119471652|ref|ZP_01614037.1| mobilizable transposon, int protein [Alteromonadales bacterium TW-7] gi|119445431|gb|EAW26718.1| mobilizable transposon, int protein [Alteromonadales bacterium TW-7] Length = 377 Score = 98.3 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 43/346 (12%), Positives = 91/346 (26%), Gaps = 20/346 (5%) Query: 12 TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPA-YMSALTGSTPKREYINSPRKKPTT 70 K R R ++ + + R A+ + + K+ + Sbjct: 35 VKRRKRQSMDLFIYANPKDKFQRDHNKKTLDISEKIRAQAIVDLANNKHHFEDSEKQQES 94 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY--RKITTKHIRSGVESRKH 128 + + + ++ +ES + R + Sbjct: 95 FYSYMQQIINDKEHTD-SPSNVSLWESSLMHLKRYCEGNPLSFADFDADILLGFRTYLIK 153 Query: 129 TPSSAIQFL----------TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + L +R A + + NP V+ K + +E+ Sbjct: 154 HARTKSDKLLSSNTTSCYFNKVRAALNKAFHEGIIRRNPVNEVKTIKIEQNPRNYLEEEE 213 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 + + AF F +G+R SD + + L Q T L Sbjct: 214 VTALYKTECRYDVLKRAFLFGCLTGMRWSDIQKLTWEKLTMIDPRATFQHIKTKQLQYLH 273 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296 + + G++ + + + T +AG+ K + H R A Sbjct: 274 LPSDATMLLGTPGEDHERVFKGLKYSSYTNV--ALTQWMLRAGITKHITFHCARHTFAVR 331 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342 + + G + + YT DR R + + S+ Sbjct: 332 MLTNDVDIYTVSKLLGHSELKTTQIYTDIIDRKR--KEAMTTLPSL 375 >gi|254884944|ref|ZP_05257654.1| transposase [Bacteroides sp. 4_3_47FAA] gi|319642539|ref|ZP_07997189.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A] gi|254837737|gb|EET18046.1| transposase [Bacteroides sp. 4_3_47FAA] gi|317385891|gb|EFV66820.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A] Length = 409 Score = 98.3 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 40/297 (13%), Positives = 94/297 (31%), Gaps = 28/297 (9%) Query: 69 TTLKWLISEYRKSAHWG---SLAVNSRISF---ESYFDQIIR---KSGDFDYRKITTKHI 119 TL L+ + + A + ++ + I+ K D + ++ + I Sbjct: 108 MTLLKLLDRHNEEMKARVGVDRAPTTMSTYVYTRRTLAEFIKTEFKVSDLAFGQLNEQFI 167 Query: 120 RSGVE----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 R + +K + +L+ ++ + + A ++ + + PK+K + + Sbjct: 168 RDYQDFCLEKKKLAMETVRHYLSILKKICRIAYKEGHSEKYHFCHFKLPKQKETTPKALS 227 Query: 176 KEDMQQFKSFWSEGSQ-----PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230 +E+ ++ + + R F F Y+G +D+ ++L + K Sbjct: 228 RENFEKLRDLEIPEKRRSHVITRDLFLFACYTGTAYADAVSITRENLFQDDEGSLWLKY- 286 Query: 231 TIITVELPDGFMKLLAMT---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285 G +KLL + K+ AG+ + Sbjct: 287 -RRKKTDYLGRVKLLPEALALIGKYRDDTRITLFPPQDYHTLRANMKSLRLMAGLSQDLV 345 Query: 286 AHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 H R A++ + G + G + + Y + RL ++ R Sbjct: 346 YHMGRHSFASLVTLEEGVPIETISKMLGHSNIKTTQIYARVTP-KRL-FEDMDRFVE 400 >gi|258651476|ref|YP_003200632.1| integrase [Nakamurella multipartita DSM 44233] gi|258652719|ref|YP_003201875.1| integrase [Nakamurella multipartita DSM 44233] gi|258554701|gb|ACV77643.1| integrase family protein [Nakamurella multipartita DSM 44233] gi|258555944|gb|ACV78886.1| integrase family protein [Nakamurella multipartita DSM 44233] Length = 617 Score = 98.3 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 49/281 (17%), Positives = 84/281 (29%), Gaps = 30/281 (10%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKHTP-- 130 Y SL +S S E QI I I + Sbjct: 226 RYLDQLRV-SLRASSVASIEITLRQIAGHLISTSSVTTVADIGRPQIEAYGTWLAGRGGY 284 Query: 131 --------SSAIQFLTSMRVLFKWAVRQEYVA---INPCLSVERPKRKTEGIRPWTKEDM 179 ++ + + F+ + Y P S +RP + R Sbjct: 285 RKNSTISKTTIGMRMCHLGAFFRRIIEWGYPDAPLRPPVFSSDRPAKDKPLPRFLDDAAT 344 Query: 180 QQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQN----NIFSIKTQKTGTII 233 +F + E P RLA E L +G+R + + I K Sbjct: 345 AKFMAAARELPDPFGRLAIEILARTGMRKGELLGLTTDAVVQIGSAYWLRIPVGKLHNDR 404 Query: 234 TVELPDGFMKLLAMTPIGKETFFINN-----DKQKMNATQFSIWFKAKATKAGV-NKSAH 287 V L ++ + + ++ + + T+ + AT AG+ + H Sbjct: 405 YVPLHPQLKTMIDNWLEQRPDWQNSHLLFTDRGRPIPPTRVDHAVQTAATAAGIGHVHPH 464 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 +R AT + + G + + A G KT+ Y + ADR Sbjct: 465 QLRHTLATQAINRGMSLEAIAALLGHKTMSMTLVYARIADR 505 >gi|331086461|ref|ZP_08335540.1| hypothetical protein HMPREF0987_01843 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330410519|gb|EGG89947.1| hypothetical protein HMPREF0987_01843 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 361 Score = 98.3 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 37/333 (11%), Positives = 91/333 (27%), Gaps = 37/333 (11%) Query: 20 KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79 + Y G ++ + A + + + Y Sbjct: 15 RTYYKDWTGVRKQKTKRGFKRKCDAQEWERAF--------KLKENLSLDMYFEDFVDLYL 66 Query: 80 KSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR---------KHT 129 + N+ ++ + +I+ ++I IR + ++ Sbjct: 67 NDIKSR-IKYNTWLTKKHIVEKKILPYFSKKKLQEIKPSDIRQWQNNMMNYRNKQGEGYS 125 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQFKSFWSE 188 + + AV + N ++ WTKE+ +F ++ Sbjct: 126 QVYLKTIHNQLSAILNHAVNFYDLKSNAARKAGSMGKERTKEMLFWTKEEYMKFIEAVAD 185 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------------- 232 AFE L + G+R + +I+ K+ Sbjct: 186 KPISFYAFEILYWCGVRMGELLALTPADFDFQACTIRINKSYQRLEGKDIITDPKTVKSN 245 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRK 291 + +P+ + L N+ +++ + +GV + H +R Sbjct: 246 RIITMPEFLSEELESYIGMLYGLNENDRIFQISKSYLHHEMDRGVKLSGVKRIRIHDLRH 305 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324 ++ + G +A + G ++V+ Y Sbjct: 306 SHVSLLVNMGYSAVAIGERVGHESVEITYRYAH 338 >gi|290769909|gb|ADD61679.1| putative protein [uncultured organism] Length = 431 Score = 98.3 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 45/427 (10%), Positives = 114/427 (26%), Gaps = 97/427 (22%) Query: 15 RTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 R + K Y F G ++ Y + + + T+ Sbjct: 7 RKKGKKWYYRFYVEDSSGNLVQKEYAGTESKSETEKLLRQAMDDYESKKFIAKSENITVG 66 Query: 73 WLISEY-RKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVESRKH-- 128 L+ + + G+L+ + ++ I + + + +T++H+++ + Sbjct: 67 ELLDIWAEEELKTGTLSNGTVQNYLGAITNIKKHPISERKLKNVTSEHLQAFFDLLSFGG 126 Query: 129 --------TPSSAIQFLT---SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 S + ++ F++AV + + + K +T+ + ++ + Sbjct: 127 TYPDGSERKGYSKNYIRSFSAVLQQSFRFAVSPKQYITFNPMQYIKLKYQTDEVDLFSDD 186 Query: 178 DMQQFKSFWSEGSQPRLA-------------FEFLLYSGLRCSDSCRAGVQHLQ---NNI 221 DM RL + Y+GLR ++C Q + + Sbjct: 187 DMDGDIQPIPREDYERLIEFLQNYNPPAILPIQIAYYAGLRIGEACGLAWQDVNLEEQCL 246 Query: 222 FSIKTQKTGTIITVEL----------------------PDGFMKLLAMTPIGKETFFINN 259 ++ + + + + L E + N Sbjct: 247 TIRRSIRYDGSRHKNIIGPTKRKKVRIVDFGDTLTEILRNARKEQLKSWMQYGELYHKNY 306 Query: 260 DKQKMNATQFSIWF-------------------------------------KAKATKA-G 281 ++ + + F + A K G Sbjct: 307 YREVKDKNRVYYEFYHLDGTESVPEDYKEISFVCLRPDGSLELPSTLGTICRKIAQKLEG 366 Query: 282 VN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRI 339 H +R + GA ++ G V Y + + ++++ + Sbjct: 367 FEGFHFHQLRHTYTSNLLANGAAPKDVQELLGHSDVSTTMNVYAHSTRKAKR--ESAKLL 424 Query: 340 SSVVDSD 346 V +D Sbjct: 425 DKVAGND 431 >gi|298374771|ref|ZP_06984729.1| integrase [Bacteroides sp. 3_1_19] gi|301308464|ref|ZP_07214418.1| integrase [Bacteroides sp. 20_3] gi|298269139|gb|EFI10794.1| integrase [Bacteroides sp. 3_1_19] gi|300833934|gb|EFK64550.1| integrase [Bacteroides sp. 20_3] Length = 310 Score = 98.3 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 89/301 (29%), Gaps = 27/301 (8%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVE---S 125 L + Y +S S++ + +R G Y +I + + + Sbjct: 6 LAEGMRMYIARLREQG-RYSSAKSYQDALNSFLRFCGQEVIPYTRIDREMLLRYQDYLRD 64 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 R+ + ++ ++ +R ++ A+ + L + + + Sbjct: 65 RECSWNTVSTYMRRIRRVYGLAMENGEAPFSRYLFKGIFMGVKSKQKKALPTESLRLLMT 124 Query: 186 WSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 R L+ G+ D ++N + QKTGT + VE+ Sbjct: 125 APLDDSGLRKTQRALCLMFLFCGMAFVDFAHLKKSDIRNGVLRYNRQKTGTPMLVEIQPV 184 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQ--------------FSIWFKAKATKAGVN--K 284 +LLA F+ K A GV Sbjct: 185 AKELLAALMTDTLRDSPYLFTFLSGTKTGEEAFREYTSALADFNSSLKELANACGVTEMV 244 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 +++ +R AT + G + G +++ + Y K ++ N S+ + Sbjct: 245 TSYSIRHSFATTLKEQGVPIEMISELLGHQSIKTTQIYLKSFSLDKMSAVNKACFESIYN 304 Query: 345 S 345 + Sbjct: 305 N 305 >gi|264678575|ref|YP_003278482.1| tyrosine recombinase XerD [Comamonas testosteroni CNB-2] gi|262209088|gb|ACY33186.1| tyrosine recombinase XerD [Comamonas testosteroni CNB-2] Length = 333 Score = 98.3 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 35/301 (11%), Positives = 80/301 (26%), Gaps = 52/301 (17%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132 ++ + R+ ++ + ++ IR G + + + + + + S Sbjct: 16 VLEQLRERIRCLYYSLRTEQAYVHRVRTFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 A ++ L + + + + RP+ T E++ + Sbjct: 76 ASTHRQALAALLFFYGKVLCADLPWLQEIGRPRLSRRLPVVLTPEEVV--RIPGFLEGVH 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230 RL + L +G+R S+ + V+ L + +I ++ Sbjct: 134 RLFAQLLYGTGMRISEGLQLWVKDLDFDHGTIIVREGKGSKDRALMLPESLAPGLREQLA 193 Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265 + + A + + M Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253 Query: 266 ATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 F FK +AGV + H +R A +G + G + YT Sbjct: 254 DQTFQRAFKRAVDEAGVAKPATPHTLRHSFAAALLRSGYDIRTVQDLLGHSDISTTMIYT 313 Query: 324 K 324 Sbjct: 314 H 314 >gi|148988907|ref|ZP_01820322.1| DNA polymerase III subunit beta [Streptococcus pneumoniae SP6-BS73] gi|147925718|gb|EDK76794.1| DNA polymerase III subunit beta [Streptococcus pneumoniae SP6-BS73] Length = 388 Score = 98.3 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 51/387 (13%), Positives = 118/387 (30%), Gaps = 58/387 (14%) Query: 11 VTKERTRHGKIIYY------FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS- 63 +T+ + G +Y G++++ T AL + ++ Sbjct: 3 ITEYTKKDGTTVYRSSVYLGIDTVTGKKVKTTISG-RTKRELRNKALQAQIDFEKNGSTV 61 Query: 64 -PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRS 121 + T L+ + ++ ++ ++ + + ++ G++ K+T I+ Sbjct: 62 FKAVQINTYAELVENWLETY-CHTVKKSTLMGTKFKIDKYLLPAFGNYRLDKLTPPIIQK 120 Query: 122 GVESRKHTPSSAIQ-------FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 V + + + + + K+AV + + NP V P+RK + + Sbjct: 121 QVNQWAKDYNQLGKGFQEYPLLHSLNKRILKYAVSLQAIPFNPARDVIVPRRKEKEGQKL 180 Query: 175 TKEDMQQ---------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI---F 222 D + + ++ LL +GLR + + Sbjct: 181 KYLDDDNLKKFLTYLEQLPNTYKNFFDTVLYKTLLATGLRIRECLALEWSDIDLKNGTLD 240 Query: 223 SIKTQKTGTIITVELPDGFMKLLA---------------------MTPIGKETFFINNDK 261 KT IT ++++ + E F N+ Sbjct: 241 VNKTLNIIKEITGPKTKSSVRMIDLDNKTVLMLRLYKARQSQIGKEMGLTYEKVFSNSFD 300 Query: 262 QKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320 + ++A S +AG + + H R A+I +AG E+ G + Sbjct: 301 KHIDARMLSFRLVKHLERAGCPRFTFHAFRHTHASILLNAGLPYKEIQTRLGHAKLSMTM 360 Query: 321 -TYTKGA-DRIRLGIK----NSRRISS 341 Y+ + D + ++ S Sbjct: 361 DIYSHLSKDNQKNATSFYEKAIEKLKS 387 >gi|107022005|ref|YP_620332.1| phage integrase [Burkholderia cenocepacia AU 1054] gi|116688949|ref|YP_834572.1| phage integrase family protein [Burkholderia cenocepacia HI2424] gi|105892194|gb|ABF75359.1| phage integrase [Burkholderia cenocepacia AU 1054] gi|116647038|gb|ABK07679.1| phage integrase family protein [Burkholderia cenocepacia HI2424] Length = 381 Score = 98.3 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 49/375 (13%), Positives = 98/375 (26%), Gaps = 51/375 (13%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 R Y F+ + A +P TLK Sbjct: 5 RRNNSKNWYYQFQIQGKK--FFGSTGTPNKTKAAQVEREMRNRAHAEQYLGDAQPITLKD 62 Query: 74 LISEYRKSAHWGSLAVNSRISFESYF--------DQIIRKSG---DFDYRKITTKH---I 119 + +Y ++ S N + G D ++TT++ + Sbjct: 63 ALEQYVEARSETSYHRNMCSIVRKTLGYKLHPRTKAKLPCYGMSPDTLLHELTTRYFDLL 122 Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFK------WAVRQEYVAINPCLSVERPKRKTEGIRP 173 + ++ P++ + +R + V +E V S + Sbjct: 123 VAKRKAEGDKPATIKHEIGLLRATINEMAKLGFKVSREIVFPELRTSYRLRYLDSNDESA 182 Query: 174 WTKEDMQQFKSFWSEGSQP------------RLAFEFLLYSGLRCSDSCRAGVQHLQ--- 218 +E + S+P FLL +G R S+ + Sbjct: 183 LLRELDPERLRARINASKPQTPEMTRNMQDNYDITVFLLDTGCRYSEVANTPWSAINLDA 242 Query: 219 NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW-FKAKA 277 I +++ + L + + + N +S K Sbjct: 243 CTISLYRSKVRNEDVLHMTSRLEAILRRRWEERRTGQRYVFEDRTGNERGYSTKSIKKAI 302 Query: 278 TKAGVN-----------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 +AG+N + H +R A+ AG + +E+ G + Y + Sbjct: 303 ERAGLNDPVLVKERGGRVTLHTLRHTFASKLVKAGVSLYEVSVLLGHSDPKMTQRYAHLS 362 Query: 327 --DRIRLGIKNSRRI 339 D R +K + Sbjct: 363 PNDASRKAVKIIDSL 377 >gi|260577793|ref|ZP_05845728.1| integrase [Corynebacterium jeikeium ATCC 43734] gi|258604188|gb|EEW17430.1| integrase [Corynebacterium jeikeium ATCC 43734] Length = 391 Score = 98.3 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 49/362 (13%), Positives = 103/362 (28%), Gaps = 56/362 (15%) Query: 11 VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 V K T+ GK + R ++ A R +P + TT Sbjct: 3 VQKRTTKTGKTRWVARYRDKTGREHSKSFDTQREAKQYLADQRVALTRGTWANPTLEKTT 62 Query: 71 LKWLISEYRKSAHWGSLAVNSRISF--ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128 L L+ ++ + +S + + D + IR+ V + + Sbjct: 63 LGTLVEDWIN--------AGTEVSRPFRVSMMRNLGDLADHPVGTLAPADIRAWVATLQT 114 Query: 129 TP----------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP-------------- 164 S+ L +++++ + AV + NP V P Sbjct: 115 GRPWKGGAPLGVSAVSSALANVKLVLEQAVDDGLIPKNPARRVTAPAPTTRVTWHDIPTK 174 Query: 165 ----KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220 + + K + + S++ + +GLR + Q++ + Sbjct: 175 EQIDQLIRYARTGYGKREKGKKYSWFQAHPDLSVMIRVSAATGLRPGEVAGLRWQNVDFD 234 Query: 221 IFSIKTQKTGTI-----ITVELPDGFMKLLAM-----------TPIGKETFFINNDKQKM 264 + + ++ D ++ L++ + + F M Sbjct: 235 NGQVLVLEQAMRTGAGTRPLKTGDKGIRALSVDDETLAAINELPRVDERVFHARWGGVPM 294 Query: 265 NATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETY 322 A ++S + GV + H R F AT AG + G + + Y Sbjct: 295 TAEKYSQALRRLCLVVGVDPVTPHSFRHFHATELLSAGVPVKAVQRRLGHSSARVTLDVY 354 Query: 323 TK 324 Sbjct: 355 AH 356 >gi|13509250|emb|CAC35342.1| integrase [Vibrio salmonicida] Length = 320 Score = 98.3 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 37/304 (12%), Positives = 78/304 (25%), Gaps = 59/304 (19%) Query: 79 RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA----I 134 + + A ++ ++ + IR + + + + ++ + A Sbjct: 10 KDHMYSKRYAKSTIEAYLFWIAAYIRFNNMQHPSSMGDTQVELYLNHLVNSQNVAQGTQA 69 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194 Q L ++ L+K ++ + ERP + T+ ++ ++ L Sbjct: 70 QALNALSFLYKEIIKSPLSLSLDFVKSERP---RKLPVVLTQTEVSALFKHCI--TKHYL 124 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV------------------- 235 A L SG+R + R +Q + + ++ Sbjct: 125 ACALLYGSGMRLMEVLRLRIQDIDFDYNCVRIWDGKGGKNRVVTLAGELIPQIRTQIQLV 184 Query: 236 ------------ELPDGFMKLLAMTPIGKETFFINNDKQKMNA----------------- 266 LL Sbjct: 185 DNYLQLDLNNPLFCGVYMPHLLRKKYPNHNKQLGWQYLFPSYKLSIDPESKQLRRHHIDE 244 Query: 267 TQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 Q K A A +NK + H +R AT +GA + G + + YT Sbjct: 245 KQLQRAVKKAAFNAHINKHVTPHTLRHSFATHLLQSGADIRTVQTQLGHSDIRTTQIYTH 304 Query: 325 GADR 328 + Sbjct: 305 VLQQ 308 >gi|29347856|ref|NP_811359.1| integrase [Bacteroides thetaiotaomicron VPI-5482] gi|253572433|ref|ZP_04849835.1| integrase [Bacteroides sp. 1_1_6] gi|29339758|gb|AAO77553.1| integrase [Bacteroides thetaiotaomicron VPI-5482] gi|251837848|gb|EES65937.1| integrase [Bacteroides sp. 1_1_6] Length = 409 Score = 98.3 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 38/295 (12%), Positives = 90/295 (30%), Gaps = 28/295 (9%) Query: 69 TTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKSG------DFDYRKITTKHI 119 TL L+ + A + ++ + + D + ++ + I Sbjct: 108 MTLLKLLDRHNGEMKARVGVDRAPTTLSTYLFTYRTLSEFIKAKFKVSDLAFGQLNEQFI 167 Query: 120 RSGVE----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 R + + H + +L ++ + + A ++ + + PK+K + + Sbjct: 168 RDYQDFILMEKGHAVDTLRGYLAILKKICRIAYKEGHSEKYHFCHFKLPKQKESTPKALS 227 Query: 176 KEDMQQFKSFWSEGSQ-----PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230 +E+ ++ + + R F F Y+G +D ++L + + K Sbjct: 228 RENFEKLRDLEIPEKRRSHVITRDLFLFACYTGTAYADVVSITRENLFTDEENNLWLKY- 286 Query: 231 TIITVELPDGFMKLLAMT---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285 G +KLL + K+ AG+ + Sbjct: 287 -RRKKTNYLGRVKLLPEALVLIEKYRDDARMTLFPPQDYHTLRANMKSLRLMAGLSQDLV 345 Query: 286 AHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 H R A++ + G + G + + Y + RL ++ R Sbjct: 346 YHTARHSFASLITLEEGVPIETISKMLGHSNIKTTQIYARVTP-KRL-FEDMDRF 398 >gi|53711957|ref|YP_097949.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] gi|60680159|ref|YP_210303.1| putative integrase/transposase [Bacteroides fragilis NCTC 9343] gi|52214822|dbj|BAD47415.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] gi|60491593|emb|CAH06345.1| putative integrase/transposase [Bacteroides fragilis NCTC 9343] Length = 393 Score = 98.3 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 43/270 (15%), Positives = 86/270 (31%), Gaps = 18/270 (6%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 I+ +R SL +++ + S + + D + ++T + I S + Sbjct: 107 FIAFFRNEIAKSSLKESTKRNHLSTLELLRSYKKDVSFSELTFEFISSFDHYLQQKGYHT 166 Query: 134 IQFLTSMRVLFKWAV----RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 M+ L + ++ + K + E++ + +S G Sbjct: 167 NTIAKHMKHLKRHINVAINKEYMEIQKYAFRKYKIKSVENNHTHLSPEELGKIESLELGG 226 Query: 190 SQPRL-----AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 +L AF F Y+GLR SD +++ + Sbjct: 227 RFTKLEKTKDAFLFCCYAGLRYSDFTNLSPENIVKMHQET--WLIYKSVKTNTEVRLPLY 284 Query: 245 LAMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297 L K + + + + + + A +G+NK S H R +AT+ Sbjct: 285 LLFEGKGIEVLNKYQDDLADFFKLRDNSNVNKELLIIAKLSGLNKRISFHTARHTNATLL 344 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGAD 327 +G + G K+V + YT D Sbjct: 345 IYSGVNITTVQKLLGHKSVKTTQVYTNIMD 374 >gi|331672347|ref|ZP_08373138.1| integrase for prophage [Escherichia coli TA280] gi|331070542|gb|EGI41906.1| integrase for prophage [Escherichia coli TA280] Length = 403 Score = 98.3 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 43/330 (13%), Positives = 92/330 (27%), Gaps = 30/330 (9%) Query: 14 ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + GK + Y +GRR+R A+ G + ++ TL Sbjct: 56 RKLTTGKWLCECYPAGRNGRRVR-KQFATKGEALAFERYTMGEIEAKPWLGESVD-RRTL 113 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----- 126 K ++ + K H SL + + ++ G+ +T+K + R Sbjct: 114 KDMVELWFK-LHGKSLTAG-QHVYNKLL-LMVDALGNPLATDLTSKMFAHYRDKRLTGEI 170 Query: 127 --------KHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKE 177 +P + + + +F+ R E+ NP + + + + T E Sbjct: 171 YFSEKWKKGASPVTVNLEQSHLSSVFRELSRLGEWTLPNPLEKMRKFTIAEKEMAWLTHE 230 Query: 178 DMQQFKSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 + + S L + L +G R ++ + + K ++ Sbjct: 231 QIIELLSDCKRQNPILALVVKICLSTGARWREAINLTRSQVTKYRITFVRTKGKKNRSIP 290 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296 + + + F + + + H +R A Sbjct: 291 ISKELYEEIMALDGFNFFTDCYFQ--------FLSVMEKTSIVLPRGQLTHVLRHTFAAH 342 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326 +G L G + Y A Sbjct: 343 FMMSGGNILALQKILGHHDIKMTMRYAHLA 372 >gi|290476895|ref|YP_003469806.1| Phage integrase [Xenorhabdus bovienii SS-2004] gi|289176239|emb|CBJ83044.1| Phage integrase [Xenorhabdus bovienii SS-2004] Length = 369 Score = 98.3 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 42/342 (12%), Positives = 105/342 (30%), Gaps = 31/342 (9%) Query: 11 VTKERTRHGKIIYYFRKG---HGRRIRL--PYPHESTFIPAYMSALTGSTPKREYINSPR 65 + K G Y G G+ I + + + + + Sbjct: 6 IEKRPRADGTTRYRCTVGVKSGGKYIYRENRTFGKQSHAKTWGAMRVAELEQNGVPTQND 65 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVE 124 + T+ L+ +Y + G A ++ + ++ +++ HI + Sbjct: 66 TEELTVGELLYKYINDPNLGVKAGRTKK---YVLNMLLDSDLAKLTLTELSVSHIIEYCK 122 Query: 125 SRK---HTPSSAIQFLTSMRVLFK-----WAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 R TPS+ ++ + + K + + + + ++ Sbjct: 123 QRHSTGITPSTINHDVSYLTSVLKSAKPIYNIDYVSNPAYEARPLLIQMGLIGKSQRRSR 182 Query: 177 EDMQQFKSFWSEGSQPRLAFE-----------FLLYSGLRCSDSCRAGVQHLQNNIFSIK 225 +Q EG + R + F + S +R + C+ + S+ Sbjct: 183 RPVQDEIDNLIEGLRKRSSHREGKIPYEDILNFSILSCMRIGEVCKIRWDDIDEKQRSVI 242 Query: 226 TQKTGTIITVELPDGFMKLLAM-TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-N 283 + + LL I + + N+ ++ F+ G+ + Sbjct: 243 VRDRKDPRKKTGNHMSVPLLGNAWEIVQRQPKTSEWIFPYNSKSVTVGFQCVRNALGIQD 302 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 H +R+ A+ +AG + E+ G ++++ + YT+ Sbjct: 303 LRYHDLRREGASRLFEAGFSIEEVAQVTGHRSLNVLWQVYTE 344 >gi|76812135|ref|YP_333123.1| hypothetical protein BURPS1710b_1722 [Burkholderia pseudomallei 1710b] gi|76581588|gb|ABA51063.1| probable site-specific [Burkholderia pseudomallei 1710b] Length = 339 Score = 98.3 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 48/350 (13%), Positives = 108/350 (30%), Gaps = 43/350 (12%) Query: 16 TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75 R + RK + A+ + + + + + TT+ L+ Sbjct: 6 KRESGWMCQVRKKGYPATS-KKFATKSEALAWGRMIESEMDRGLFASRDDAERTTIADLL 64 Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESR--KHTP 130 Y ++ ++ S S + + ++ G + +T H+ + ++R + +P Sbjct: 65 DRY-----TRDISP-TKRSGGSDMGRAGKLKKQLGAYKLTALTAPHLVAYRDARLREVSP 118 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 + + L + + A R+ V + + RK +G D Q +E Sbjct: 119 QTVVHELNLLNRVLTLATREWGVVVPSGVPKVVKPRKPQGRDRRLHPDEIQAIIDATESP 178 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMT 248 R + +G+R + +++ + KT T TV L +L Sbjct: 179 DLRDFIRLAVATGMRRGELASLRWENIDLDQRTAHLPATKTDTPRTVPLSSVATAVLQAR 238 Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAG-------------------VNKSAHGV 289 T + A + F +A + H + Sbjct: 239 KDAGYTVPF-----AVTANALTRAFCRAVQRARRLYESTCTFLERPVTSNWLIGIRLHDL 293 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 R + + + G E+ + G KT+ + YT ++++ Sbjct: 294 RHEATSRLFEKGLNPMEVASITGHKTLSMLQRYTHL-----RAEDLAKKL 338 >gi|289450059|ref|YP_003474822.1| phage integrase, N-terminal SAM domain-containing protein [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184606|gb|ADC91031.1| phage integrase, N-terminal SAM domain protein [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 329 Score = 98.3 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 33/276 (11%), Positives = 79/276 (28%), Gaps = 14/276 (5%) Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119 T + ++ + + + S + + + + + + R+I T + Sbjct: 40 ETEEEVNAGLTNEEFLNNFLSAKRIEGCSEKSLTYYRATIESMTTRI-KKNVREIETDDL 98 Query: 120 R----SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 R + + + + + F W + Y+ +P + + K +T Sbjct: 99 RTYLTEYQQEKNSSKVTVDNIRRILSSFFSWLEDENYILKSPARRIHKVKAALTIKDTYT 158 Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIIT 234 E +++ + E + + L +G+R + + Sbjct: 159 DEALEKMRDSC-EELRDLALIDILASTGMRVGELVLLNRDDINFEERECVVFGKGSKERM 217 Query: 235 VELPDGFMKLLAMTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAH 287 V L G+ +++ + K + K H Sbjct: 218 VYFDARTKIHLLTYLQGRTDDNPALFVSLRAPHERLKIGGVECRLRELGNKLDIEKVHPH 277 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 R+ AT++ D G +L G K +D Y Sbjct: 278 KFRRTLATMAIDKGMPIEQLQQLLGHKRIDTTLQYA 313 >gi|265765299|ref|ZP_06093574.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16] gi|263254683|gb|EEZ26117.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16] Length = 393 Score = 98.3 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 43/270 (15%), Positives = 86/270 (31%), Gaps = 18/270 (6%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 I+ +R SL +++ + S + + D + ++T + I S + Sbjct: 107 FIAFFRNEIAKSSLKESTKRNHLSTLELLRSYKKDVSFSELTFEFISSFDHYLQQKGYHT 166 Query: 134 IQFLTSMRVLFKWAV----RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 M+ L + ++ + K + E++ + +S G Sbjct: 167 NTIAKHMKHLKRHINVAINKEYMEIQKYAFRKYKIKSVENNHTHLSPEELGKIESLELGG 226 Query: 190 SQPRL-----AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 +L AF F Y+GLR SD +++ + Sbjct: 227 RFTKLEKTKDAFLFCCYAGLRYSDFTNLSPENIVKMHQET--WLIYKSVKTNTEVRLPLY 284 Query: 245 LAMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297 L K + + + + + + A +G+NK S H R +AT+ Sbjct: 285 LLFEGKGIEVLNKYQDDLADFFKLRDNSNVNKELLIIAKLSGLNKRISFHTARHTNATLL 344 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGAD 327 +G + G K+V + YT D Sbjct: 345 IYSGVNITTVQKLLGHKSVKTTQVYTNIMD 374 >gi|257879743|ref|ZP_05659396.1| site-specific recombinase [Enterococcus faecium 1,230,933] gi|261209087|ref|ZP_05923490.1| predicted protein [Enterococcus faecium TC 6] gi|289566304|ref|ZP_06446734.1| predicted protein [Enterococcus faecium D344SRF] gi|294616983|ref|ZP_06696703.1| site-specific recombinase, phage integrase family [Enterococcus faecium E1636] gi|314940614|ref|ZP_07847744.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133a04] gi|314942809|ref|ZP_07849625.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133C] gi|314953492|ref|ZP_07856407.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133A] gi|314992553|ref|ZP_07857972.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133B] gi|314997829|ref|ZP_07862737.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133a01] gi|257813971|gb|EEV42729.1| site-specific recombinase [Enterococcus faecium 1,230,933] gi|260076914|gb|EEW64638.1| predicted protein [Enterococcus faecium TC 6] gi|289161880|gb|EFD09750.1| predicted protein [Enterococcus faecium D344SRF] gi|291590137|gb|EFF21926.1| site-specific recombinase, phage integrase family [Enterococcus faecium E1636] gi|313588144|gb|EFR66989.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133a01] gi|313592920|gb|EFR71765.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133B] gi|313594474|gb|EFR73319.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133A] gi|313598444|gb|EFR77289.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133C] gi|313640201|gb|EFS04782.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133a04] Length = 388 Score = 98.3 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 53/379 (13%), Positives = 112/379 (29%), Gaps = 56/379 (14%) Query: 11 VTKERTRHG---KIIYYFRKG-HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 + K T+ G + Y RK +G++ T A + E + Sbjct: 3 IQKYTTKSGARYSVRLYVRKDENGKQEYYVKKGFKTEKEAKLHEARKKVEI-EDTGYHKP 61 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 + E+ S + + + + I+ K G+ KIT H ++ V Sbjct: 62 SNDLFITVYEEWLPSYRNRVQETTYQRTKDLFRLHILPKFGNKSISKITPVHCQNAVNEW 121 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP---WTKEDMQQFK 183 + Q + +F++A+ E + NP + PKR+ + + Sbjct: 122 ALKFKNIKQLKSYSSQIFEYAIFAELLHRNPMANTNLPKREKKENENYFSLEELKAFWDI 181 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG------------- 230 E + L F+ L+ +G+R + + + +K+ Sbjct: 182 LNKEEPLKHILIFQLLITTGIRKGELAALHWSDIYFEEQLMYVRKSYATIRNEEKNARRK 241 Query: 231 ------------TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF--------- 269 + + + +++L + + + Q Sbjct: 242 TVRIQKNTKNISSERILPIDAQTIEMLKIWKKEQARELLQFGINTNTKNQLIFTYVNADG 301 Query: 270 -----------SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD 317 + K K + HG R AT+ + GA+ E G K + Sbjct: 302 DINQPLHADYSNNILKRLEKKYKFKHVTIHGFRHTHATLLLEGGASIKETQDRLGHKNAE 361 Query: 318 QA-ETYTKGADRI-RLGIK 334 TY+ ++ R ++ Sbjct: 362 TTLNTYSHVTEKAQRNALE 380 >gi|227329213|ref|ZP_03833237.1| phage integrase [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 343 Score = 98.3 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 47/331 (14%), Positives = 83/331 (25%), Gaps = 31/331 (9%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 + G+ FR R+ + T + + ++ L + Sbjct: 5 KLPSGEWRADFRINGRDSKRVRKTFPTKGEAVVFEQFTLNEASEKPWLGEKEDRRRLSEV 64 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-------- 126 I + H SL+ S + GD + T K + R Sbjct: 65 IDLWY-HLHGQSLSA--ISSRMGKLKIVCDGLGDPIASRFTAKDFAHYRDKRLRGEISNG 121 Query: 127 --------KHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKE 177 P + + L + +F R E+ NP V K + + + T Sbjct: 122 YHDSPERWAVKPITVNRELQYLTAVFSELKRLGEWTLPNPLDGVRIFKEEDKEMAWLTHP 181 Query: 178 DMQQFKSFWSEGSQPRLAFEF--LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 + + L + L +G R S++ L S K TV Sbjct: 182 QINELLRACESYGNEDLTWIVKVCLSTGARWSEAENLTRSQLSPFKVSFFKTKGKKNRTV 241 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSAT 295 + LA+ F + + H +R A+ Sbjct: 242 PISQWLHDELALRQRRMFKPC---------YQNFKKVLAMTSITLPDGQKTHVLRHTFAS 292 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGA 326 G L G + + Y A Sbjct: 293 HFMMNGGNILVLQRILGHANIRETMKYAHFA 323 >gi|171472293|gb|ACB46849.1| integrase [Pseudomonas stutzeri] Length = 320 Score = 98.3 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 40/305 (13%), Positives = 87/305 (28%), Gaps = 52/305 (17%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS-S 132 L+ + R+ ++ + + + + IR +++ + I + + + S Sbjct: 7 LLDQMRERIRLKHYSIRTERVYCEWVKRFIRFHQYRHPQEMGAQEIEAFLTELAVARNVS 66 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 A ++ L + + V R K+ T E+++ + S+P Sbjct: 67 ASTQNQALSALLFLYKEVLSIDLPWLADVVRAKKPQRLPVVLTIEEVRSALA--QLESEP 124 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVELPDGFMK------- 243 L + L +G+R ++ R V+ + + I + K LP ++ Sbjct: 125 WLVYSLLYGTGMRLMEALRLRVKDVDFSRHEILIRDGKGMKDRVTMLPRSLVQPLRRHLA 184 Query: 244 ---------------------LLAMTPIGKETFFINNDKQKMNA---------------- 266 LA + + Sbjct: 185 VVKAIHDSEREQGRGDVWLPFALARKYPKAPKEWGWQYVFPASGLSVDPRSGVVRRHHLD 244 Query: 267 -TQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + FK A + + H +R AT ++G + G V YT Sbjct: 245 EKRIQRAFKRAVRGASIVKPATPHTLRHSFATHLLESGQDIRTVQELLGHSDVKTTMIYT 304 Query: 324 KGADR 328 +R Sbjct: 305 HVLNR 309 >gi|325280655|ref|YP_004253197.1| integrase family protein [Odoribacter splanchnicus DSM 20712] gi|324312464|gb|ADY33017.1| integrase family protein [Odoribacter splanchnicus DSM 20712] Length = 405 Score = 98.3 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 39/299 (13%), Positives = 98/299 (32%), Gaps = 28/299 (9%) Query: 57 KREYINSPRKKPTTLKWLISEYRKSAH------WGSLAVNSRISFESYFDQIIR------ 104 R +N + K T K L + +++ A + +++ ++ Sbjct: 93 ARAIVNRYQGKDETFKTLYNVFKEHNDNCRKLIGTDYADITVRRYDNCLKYLMELVKRDY 152 Query: 105 KSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 K D R++ + +R + ++ I+++ + + A+ E++ NP Sbjct: 153 KIDDILLREVNGELVRKFDLYLKTEKHCAQNTVIRYMKCFKKVINLAIANEWLTKNPFAG 212 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHL 217 ++ + + + ++ ++ + + + R F F +Y+GL D +H+ Sbjct: 213 IKFHEVEVNK-QFLSQSEINRIWQKEFKIERLELVRDVFIFCVYTGLAFIDVYNLHPEHI 271 Query: 218 QNNIFSIKTQKTGTIITVELPDGF-----MKLLAMTPIGKETFFINNDKQKMNATQFSIW 272 + T L + ++L + + + Sbjct: 272 SEDGNGNLWIVKPREKTNNLCNIPLLSIPKQILEKYKDNPYCMDKGTLLPVPCNQKMNSY 331 Query: 273 FKAKATKAGVNK--SAHGVRKFSAT-ISADAGATAHELMATYGWKTVDQAETYTKGADR 328 K A G+ K + H R A+ I+ + + G + + Y K D+ Sbjct: 332 LKEIADLCGIKKNLTTHTARHSFASVIALANNVSLPNVAKMLGHSSTRMTQHYAKVLDQ 390 >gi|303233777|ref|ZP_07320431.1| site-specific tyrosine recombinase XerC [Finegoldia magna BVS033A4] gi|302495211|gb|EFL54963.1| site-specific tyrosine recombinase XerC [Finegoldia magna BVS033A4] Length = 326 Score = 98.3 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 40/303 (13%), Positives = 85/303 (28%), Gaps = 47/303 (15%) Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS--------------------G 107 P L + Y ++ + N+ + + +I+ Sbjct: 5 PMILMDFLD-YLETI--KGRSSNTVKEYAYDINLMIKYIIARKQNIKLKSFDDIVNIDSS 61 Query: 108 DFDYRKITTKHIRSGVESRKHTPSSAIQ-------FLTSMRVLFKWAVRQEYVAI-NPCL 159 D D + + +S+R +K+ + + I NP Sbjct: 62 DVDLNFFKNIDVIDLHSFMGFLDHNRSNGSSTRSRKTSSIRTFYKYLINIRKLDIINPAE 121 Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFW------SEGSQPRLAFEFLLYSGLRCSDSCRAG 213 ++ PK+ T ++ ++ L G+R S+ Sbjct: 122 LLDSPKKNIRQPVYLTLDESLDLLKVILREKDEEIKARDYCITVLFLNCGMRLSELSSIN 181 Query: 214 VQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN-----NDKQKMNATQ 268 + H++ N K TV L D + + + + + +M+ Sbjct: 182 IDHIKTNTLR-VIGKGNKERTVYLNDMCLDAIDNYLKIRPEIDNDALFISKKRNRMSNRA 240 Query: 269 FSIWFKAKATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTK 324 + G + S H +R +AT+ G L G ++V + YT Sbjct: 241 IQYRIEHYLKIGGFDTSIYSVHKLRHTAATLMYQYGNVDIKVLQEILGHESVSTTQIYTH 300 Query: 325 GAD 327 + Sbjct: 301 VDN 303 >gi|119491191|ref|ZP_01623288.1| recombinase [Lyngbya sp. PCC 8106] gi|119453532|gb|EAW34693.1| recombinase [Lyngbya sp. PCC 8106] Length = 345 Score = 98.3 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 37/274 (13%), Positives = 91/274 (33%), Gaps = 36/274 (13%) Query: 91 SRISFESYFDQIIRKSGDFDY--RKITTKHI----RSGVESRKHTPSSAIQFLTSMRVLF 144 + I+++ Q + +I I R ++ + P++ L+ +R + Sbjct: 42 TLITYKRQLIQFLDWCDQRQLHPAEINKNDIKKYRRWMIDKKGFKPATIALKLSVVRRFY 101 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS--------EGSQPRLAF 196 + A+ + + +NP V+ PK K + T + + + ++ + ++ + Sbjct: 102 QAAMEKGLLTVNPATGVKAPKEKHDPAEKITYLEASEVEQLFATIPDDGSLKSARDKALL 161 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--ITVELPDGFMKLLAMTPIGKET 254 L G R + RA + + + + G V L +LL + +E Sbjct: 162 AILTLEGPRTVELHRANICDIVRQGKNWGIRVEGKRNIRIVPLTPEIAQLLRVYLERREA 221 Query: 255 FFINNDK--------------QKMNATQFSIWFKAKATKAGVNKSA------HGVRKFSA 294 ++++ + +A + ++ H +R + Sbjct: 222 AEGQLKPSSPLFVAVGNRAGGKRISRRGIRLIVDGYLKEAQLKQTPGRTLSTHSLRHTAG 281 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADR 328 T++ +GA ++ G Y DR Sbjct: 282 TLALRSGAELRQVQDLLGHADPRTTCIYAHVGDR 315 >gi|270157694|ref|ZP_06186351.1| phage integrase family protein [Legionella longbeachae D-4968] gi|269989719|gb|EEZ95973.1| phage integrase family protein [Legionella longbeachae D-4968] Length = 408 Score = 98.3 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 54/353 (15%), Positives = 112/353 (31%), Gaps = 34/353 (9%) Query: 14 ERTRHGKIIYYFRK---GHGRRIRLPYPHE-------STFIPAYMSALTGSTPKREYINS 63 + G +++R G + + + F + +GS P+ Sbjct: 30 RVSPKGTKTWFYRYKFEGKEKWLTIGNFPAMGVAEARKAFNDLWEIRQSGSDPEEIIQQR 89 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLA-VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122 K LK LI ++ + + II G F+ KI + I Sbjct: 90 LLKNNNNLKTLICDWYNNYIVKHRKQPRQIK--QQIDADIIPLLGAFEIEKIQARDISKA 147 Query: 123 VESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR---KTEGIRPWTKE 177 +++ + +P A + L++++ F +AV + +A NP + + + R T E Sbjct: 148 LDNIVQRGSPVHANKVLSTLKQAFNYAVSRGEIATNPAMHIRARDIGGLEKPRDRNLTLE 207 Query: 178 DMQQFKSFWSEGSQ-----PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 +++ F G+ + A + +L +G R + A Sbjct: 208 EIKTLWLFLDNGNHSMSIQIKNAIKIILLTGARTGELRLAKWSEFNFEKSLWVIPSENNK 267 Query: 233 ITVELPDGFMKL-------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-K 284 I + + L + + +D + + + + G+ Sbjct: 268 IGLSMKIHLCDLAKKLLLEIKDISLSDYVLAGASDDEPLTDKAIPKAVQRIQERVGIPQW 327 Query: 285 SAHGVRKFSATISAD-AGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIK 334 +AH +R+ AT + G + G K TY K + R + Sbjct: 328 TAHDLRRTFATQLGETLGINPVVIEKCLGHKMPKIMATYNKDEMLPQRREALD 380 >gi|265763640|ref|ZP_06092208.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16] gi|263256248|gb|EEZ27594.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16] Length = 165 Score = 98.3 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 24/139 (17%), Positives = 47/139 (33%), Gaps = 5/139 (3%) Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPIGKE 253 A+ F + GLR SD + + + + + L P + Sbjct: 17 AYLFSCFCGLRISDIIGLQWKDVFIDNGQYRLAVAMQKTKEPIYLPLSNEALKWMPERGD 76 Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATY 311 ++ + + K A AG++K + H R AT+ GA + + Sbjct: 77 KTADDHVFDL--PSGINQLIKPWAKAAGISKRFTFHTARHTFATMMLTLGADLYTVSKLL 134 Query: 312 GWKTVDQAETYTKGADRIR 330 G +V + Y K ++ + Sbjct: 135 GHTSVKMTQVYAKIVNKKK 153 >gi|253771281|ref|YP_003034141.1| putative integrase/recombinase [Clostridium botulinum D str. 1873] gi|253721433|gb|ACT33725.1| putative integrase/recombinase [Clostridium botulinum D str. 1873] Length = 272 Score = 98.3 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 29/267 (10%), Positives = 81/267 (30%), Gaps = 15/267 (5%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKHTP 130 + ++ + + + + ++++ + I +I T ++R + + +P Sbjct: 5 LEKFIEYLYQKDKSKKTIYTYKNDIKRFIEYFEKNKL-EINTINMRKFKDYLLEALLLSP 63 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 + + + ++R ++ + + T + ++ Sbjct: 64 KTVNRNIIAIRQFLEYIHINNIDIKMIKIQEQGFLEDTL---TNDEVIRMIKETEKMHDL 120 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250 + + L Y+G+R S++ + + + K G + +P + I Sbjct: 121 RAKAFICTLYYTGMRVSEAISLLSEDINKDSIR-ILGKGGKYRDILIPKKLKNIWKDYMI 179 Query: 251 GKETFFINNDKQK---MNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATA 304 +E + ++ K A + K H R D G Sbjct: 180 VRENNSDKLFTGREGGISRFTALNIVKKYGHMAKIKKDKVYNHAFRHLYCLNLVDRGIPL 239 Query: 305 HELMATYGWKTVDQAETYTKGADRIRL 331 + G K + YT+ + + L Sbjct: 240 DAIKDLAGHKNISTTIIYTRKSKKQLL 266 >gi|315171645|gb|EFU15662.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX1342] Length = 382 Score = 98.3 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 52/375 (13%), Positives = 118/375 (31%), Gaps = 43/375 (11%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP---- 64 +V + G + +R + ++ + +A + + + Sbjct: 11 KYVFSYSNKKG-TFWGYRYPYYNSLKHRKEASKRGFESERAANKALLKIQYDLETQNTSF 69 Query: 65 -RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKI-----TTK 117 K T+ I + A + +V+++ + ES I G+ + + Sbjct: 70 IENKQLTIDEWIKVWIPYAQ-DNWSVSTKQNIESAIKFHISPLIGNQKLSSLNKITYKRE 128 Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 I + K+T S+ + + + AV + + N + KE Sbjct: 129 FIDKLRQENKYTESTIQTWHKIVMRMINAAVHNQIIPSNTLTGFKF-DLSNNVRSFSKKE 187 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI------------K 225 + +E Q ++ F LL SG+R + + K Sbjct: 188 LQRFVAVLENEDIQTQVIFLTLLKSGMRKGELMGLRWSDIDLTEKYFDINSTRGDYGENK 247 Query: 226 TQKTGTIITVELPDGFMKLLAMTPIG--------------KETFFINNDKQKMNATQFSI 271 + +I V + + L+ K+ F +++ + ++ + Sbjct: 248 PKTKTSIRKVYFDNSLLTLIKKYKNHEKERLFREGIILSDKDYFILSSRNLPIKQSRITY 307 Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA-DR 328 F+ KA V N + HG+R AT +AGA + G K ++ + Y+ + Sbjct: 308 MFRLLCEKAEVQNITVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVYSDVLKEE 367 Query: 329 IRLGIKNSRRISSVV 343 + ++ + Sbjct: 368 EKETADMMDKLIENL 382 >gi|306826811|ref|ZP_07460113.1| phage integrase family prophage LambdaSa2 [Streptococcus pyogenes ATCC 10782] gi|304431100|gb|EFM34107.1| phage integrase family prophage LambdaSa2 [Streptococcus pyogenes ATCC 10782] Length = 359 Score = 98.3 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 36/350 (10%), Positives = 93/350 (26%), Gaps = 27/350 (7%) Query: 12 TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 ++ + +R G++ T A ++A T+ Sbjct: 4 YRKLGSGWEYRITYRDSQGKKREKSKRGFKTKTLAKVAAQQAEIDLNTLTADLLD--ITV 61 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 + + + ++ F I G + IT + + + Sbjct: 62 LDYNRRWADIYKKPHITAKTWQTYTKNFKHIEHYFGTRKLKSITHTFYQQVLNDFGEKVA 121 Query: 132 --SAIQFLTSMRVLFKWAVRQEYVAINPCLS-----VERPKRKTEGIRPWTKEDMQQFKS 184 + +F ++ K A+R + N + K ++E ++ + Sbjct: 122 QQTLDKFHYQIKGACKMAIRDGIIRDNFADGAIVRSQKPAKEESEKFMEESEYLTFIKVA 181 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN---------------IFSIKTQKT 229 L + +GLR ++ + + + T+ Sbjct: 182 KSKVKYPSYLTTYIIAVTGLRFAEVQGLTWKDIDFDNGYIDINKTFDYSISQNFGPTKNE 241 Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGV 289 +I V + ++LL + + K G N + H + Sbjct: 242 QSIRKVPIDKNSLELLRNFKSDYYQDNKLGRVCFGASNNATN--KVIKRVTGRNLTNHSL 299 Query: 290 RKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGIKNSRR 338 R A+ G + G + ++ + Y + ++ + + Sbjct: 300 RHTYASYLIAQGVDLISVSKLLGHENLNITLKVYAHQIESLKEKNDHQVK 349 >gi|316932246|ref|YP_004107228.1| integrase family protein [Rhodopseudomonas palustris DX-1] gi|315599960|gb|ADU42495.1| integrase family protein [Rhodopseudomonas palustris DX-1] Length = 440 Score = 98.3 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 53/358 (14%), Positives = 98/358 (27%), Gaps = 48/358 (13%) Query: 10 FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR---K 66 +V + RTR Y I L G + E R + Sbjct: 41 YVIQYRTRGRSRRY--------TIGLHGVWTPETARREAKVQLGRVAQGENPAEERELDR 92 Query: 67 KPTTLKWLISEYRKSAHW--------GSLAVNSRI-SFESYFDQIIRKSGDFDYRKITTK 117 K T+K L +Y ++ II G+ R +T Sbjct: 93 KALTMKQLCEQYLADMQAGLILGKGGRPKKASTVEVDIGRIRRHIIPLVGNRRVRDVTKA 152 Query: 118 HIRSGVESR--------------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINP 157 + + + + P +A + + + +F +AV+ + NP Sbjct: 153 DMNNLMRDIIAGKTRISVKTEKLRGRAIVRGGPGTATRAMGLLGGIFTYAVQLGIIEHNP 212 Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY-----SGLRCSDSCRA 212 +++PK K R E + R + +G R ++ Sbjct: 213 THGLKKPKYKVRDRRLSEAEYRTLGEILARARKSDRYRIHAEILQLIAVTGCRKTEIVEL 272 Query: 213 GVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS 270 + ++ K G + L T+ F Sbjct: 273 KWSEVDFEGSCLRLSDSKEGASVRPIGLSAINFLEKRHAHRTGTYVFPGQSDDNAVGNFP 332 Query: 271 IWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 +K T++ + + + H +R A+I+ D G T + A G Y D Sbjct: 333 QSWKKLFTESPLWDVTPHVLRHSFASIANDLGFTEITIAALIGHAKGSVTSKYVHTLD 390 >gi|26246822|ref|NP_752862.1| integrase for prophage [Escherichia coli CFT073] gi|26107222|gb|AAN79405.1|AE016758_9 Integrase for prophage [Escherichia coli CFT073] Length = 343 Score = 98.3 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 43/330 (13%), Positives = 86/330 (26%), Gaps = 30/330 (9%) Query: 14 ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + GK + Y GRR+R A+ T + ++ TL Sbjct: 4 RKLTTGKWLCECYPAGRSGRRVR-KQFATKGEALAFERHTMEETEAKPWLGESVD-RRTL 61 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----- 126 K ++ + K H SL + ++ ++ G+ +T+K + R Sbjct: 62 KDVVELWFK-LHGKSLTAG-QHVYDKLL-LMVDALGNPLATDLTSKMFAHYRDKRLTGEI 118 Query: 127 --------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 +P + + + +F R + L R E W + Sbjct: 119 YFSEKWKKGASPVTINLEQSYLSSVFSELSRLGEWSYPNPLENMRKFTIAEKEMAWLTHE 178 Query: 179 MQQFKSFWSEGSQPRLAFE--FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 + P LA L +G R ++ + + K ++ Sbjct: 179 QIVELLADCKRQDPILALVVKICLSTGARWREAINLTRSQVTKYRITFVRTKGKKNRSIP 238 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296 + + + F + + + H +R A Sbjct: 239 ISKELYEEIMALDGFNFFTDCYFQ--------FLSVMEKTSIVLPRGQLTHVLRHTFAAH 290 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326 +G L G + Y A Sbjct: 291 FMMSGGNILALQKILGHHDIKMTMRYAHLA 320 >gi|157160328|ref|YP_001457646.1| phage integrase family site specific recombinase [Escherichia coli HS] gi|157066008|gb|ABV05263.1| site-specific recombinase, phage integrase family [Escherichia coli HS] gi|323938204|gb|EGB34464.1| phage integrase [Escherichia coli E1520] Length = 343 Score = 98.3 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 43/330 (13%), Positives = 86/330 (26%), Gaps = 30/330 (9%) Query: 14 ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + GK + Y GRR+R A+ T + ++ TL Sbjct: 4 RKLTTGKWLCECYPAGRSGRRVR-KQFATKGEALAFERHTMEETEAKPWLGESVD-RRTL 61 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----- 126 K ++ + K H SL + ++ ++ G+ +T+K + R Sbjct: 62 KDVVELWFK-LHGKSLTAG-QHVYDKLL-LMVDALGNPLATDLTSKMFAHYRDKRLTGEI 118 Query: 127 --------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 +P + + + +F R + L R E W + Sbjct: 119 YFSEKWKKGASPVTINLEQSYLSSVFSELSRLGEWSYPNPLENMRKFTIAEKEMAWLTHE 178 Query: 179 MQQFKSFWSEGSQPRLAFE--FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 + P LA L +G R ++ + + K ++ Sbjct: 179 QIVELLADCKRQDPILALVVKICLSTGARWREAVNLTRSQVTKYRITFVRTKGKKNRSIP 238 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296 + + + F + + + H +R A Sbjct: 239 ISKELYEEIMALDGFNFFTDCYFQ--------FLSVMEKTSIVLPRGQLTHVLRHTFAAH 290 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326 +G L G + Y A Sbjct: 291 FMMSGGNILALQKILGHHDIKMTMRYAHLA 320 >gi|310764975|gb|ADP09925.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617] Length = 359 Score = 98.3 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 43/290 (14%), Positives = 92/290 (31%), Gaps = 32/290 (11%) Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVES 125 TL+ L + + + + + G +++ + S Sbjct: 19 QTLRQLAESWLSHLAAAGRSPRTVQGYGERVRAFLAWCEPRGIRYAPQVSLVVLESYQRW 78 Query: 126 RKHTPSS---------AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI----- 171 + + L+++R L +W +++ ++ NP +E PK + Sbjct: 79 LQSYRRADGRHLVVNGQRHLLSALRGLLRWLLKRHHILYNPADLLELPKEERRLPAQVFS 138 Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKT 229 T+ +Q + G + R E L SG+R S+ + + +++ K Sbjct: 139 ESETRRVLQSLDAGTPPGLRNRAILELLWSSGIRRSELAGLLLSDVDFTRGVVNVRRGKG 198 Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM-----------NATQFSIWFKAKAT 278 G V + + L + T ++ +A Sbjct: 199 GKDRVVPVGYAALMWLGRYLQDVRPRLAQRFDSGHLFISHKGTGLAHGTLTAMAGRAIRD 258 Query: 279 KAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 A + K+ H R AT + GA + A G + ++ + YT+ A Sbjct: 259 GAHLKKAGACHIFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVA 308 >gi|46198973|ref|YP_004640.1| transposase [Thermus thermophilus HB27] gi|46196597|gb|AAS81013.1| transposase [Thermus thermophilus HB27] Length = 391 Score = 98.3 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 55/373 (14%), Positives = 110/373 (29%), Gaps = 55/373 (14%) Query: 13 KERTRHGKIIYYFRKGHGRRIR-----LPYPHES-------TFIPAYMSALTGSTPKREY 60 + R + G ++Y G G+ + P AL + Sbjct: 2 RRRGKGGGSVFYHE-GKGKWVAQLTWIDPATGRKVKREKHCETRKEAERALADMVAAQAK 60 Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR---------KSGDFDY 111 T + +Y K L NS + G Sbjct: 61 GLLTDPSRLTTRDFALDYLKRLEREGLRPNSIRLAREELAHALPSLKDPKAHDPLGRMRL 120 Query: 112 RKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168 +++ H+R+ V+ + P + + L ++ LF+ A+R E VA NP +V K Sbjct: 121 QEVKPVHVRAAVDRVAEAGYAPRTVNRVLMRLKALFREALRLELVARNPAEAVRLRLPKG 180 Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225 E + +E S+ + L +L +GLR ++ + + + Sbjct: 181 EKTARALEPHEVARLLEAAEASRSKDMALLLRLMLETGLRRGEALALQWRDIDLEAGELT 240 Query: 226 TQKTG------------------------TIITVELPDGFMKLLAMTPIGKETFFI-NND 260 ++ + + L +LL + Sbjct: 241 VWRSWTKAGGKGVFSEPKTPTAKRKVPLPRGLLLRLKARREELLERLTPEEVDGLFLVGG 300 Query: 261 KQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-Q 318 + ++ F+ + + A KAG+ + H +R AT++ G + G + Sbjct: 301 VKPVDPDAFNHYLRRLAEKAGLGRVRVHDLRHTWATLALSRGVPLEVVSERLGHASPTIT 360 Query: 319 AETYTKGADRIRL 331 Y + R Sbjct: 361 LNVYRHLLEEERR 373 >gi|331086468|ref|ZP_08335547.1| hypothetical protein HMPREF0987_01850 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330410526|gb|EGG89954.1| hypothetical protein HMPREF0987_01850 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 361 Score = 98.3 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 37/333 (11%), Positives = 91/333 (27%), Gaps = 37/333 (11%) Query: 20 KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79 + Y G ++ + A + + + Y Sbjct: 15 RTYYKDWTGVRKQKTKRGFKRKCDAQEWERAF--------KLKENLSLDMYFEDFVDLYL 66 Query: 80 KSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR---------KHT 129 + N+ ++ + +I+ ++I IR + ++ Sbjct: 67 NDIKSR-IKYNTWLTKKHIVEKKILPYFSKKKLQEIKPSDIRQWQNTMMNYRNKQGEGYS 125 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQFKSFWSE 188 + + AV + N ++ WTKE+ +F ++ Sbjct: 126 QVYLKTIHNQLSAILNHAVNFYDLKSNAARKAGSMGKERTKEMLFWTKEEYMKFIEAVAD 185 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------------- 232 AFE L + G+R + +I+ K+ Sbjct: 186 KPISFYAFEILYWCGVRMGELLALTPADFDFQACTIRINKSYQRLEGKDIITDPKTVKSN 245 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRK 291 + +P+ + L N+ +++ + +GV + H +R Sbjct: 246 RIITMPEFLSEELESYIGMLYGLNENDRIFQISKSYLHHEMDRGVKLSGVKRIRIHDLRH 305 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324 ++ + G +A + G ++V+ Y Sbjct: 306 SHVSLLINMGYSAVAIGERVGHESVEITYRYAH 338 >gi|311120291|gb|ADP69248.1| putative integrase [Leuconostoc phage phiMH1] Length = 356 Score = 98.3 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 39/338 (11%), Positives = 89/338 (26%), Gaps = 25/338 (7%) Query: 16 TRHGKIIYYFRKGH-GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 R G+ ++ T A A K+ + + Sbjct: 6 KRGKTWTASVSVPDNGKYLKKTQSGFQTKKAATNWANETEVQKQNRELTKDNAI--FVEV 63 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSS 132 ++ L ++ + + + +K G+ +IT+K + + H SS Sbjct: 64 FEDWYHIFKEPQLQTATKQWYRTTLSLLTKKWGNKKMSEITSKDFQLLINEYGAEHVKSS 123 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 ++A+ + + + +V + + + K S+ Sbjct: 124 VSHIKNITSAFIRYAIDEGLIIRDFTRNVNTYSIVKSKDKSLKFLEEDEMKKLIIXASES 183 Query: 193 RLAFEFLLYS----GLRCSDSCR-------AGVQHLQNNIFSIKTQKTGTI-------IT 234 ++ + GLR S+ + N + Sbjct: 184 DAVTSHMILTALYSGLRFSEVAGLTKDDFDFKNNTVSVNKSWQIHDQAFKETKTKTSNRE 243 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293 + + FM G+ F + + + K K + HG+R Sbjct: 244 ITISSEFMNKAKKWTFGERFAFQGENDTPPSDNAANKQLKRFLEKDNSTVITFHGLRHTH 303 Query: 294 ATISADAGATAHELMATYGWKTVD-QAETYTKGADRIR 330 A+ + + G V+ TY ++ R Sbjct: 304 ASFLLSKDISIQYVSERLGHADVNITLSTYAHLLEKKR 341 >gi|282892190|ref|ZP_06300661.1| hypothetical protein pah_c212o013 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281497924|gb|EFB40272.1| hypothetical protein pah_c212o013 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 313 Score = 98.3 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 45/293 (15%), Positives = 90/293 (30%), Gaps = 32/293 (10%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVESR 126 + LI + S NS+ +++ + K+T + I + E Sbjct: 19 FEDLIERFISSIDA---KANSKDTYKRQIKPFFEWVSERYSFNSLHKMTQQDIFAYKEFL 75 Query: 127 ---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + + +LT++R F+W + K K T E ++ Sbjct: 76 VRDGKSAYTISGYLTAVRKFFEWLESNKIFPNIAKSVKGLKKPKGFRKDCLTVEQIRTAL 135 Query: 184 SFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239 S + +G + F L+ +GLR + RA V L+ Q G + Sbjct: 136 SSFDVETSDGLRDYALFNLLVRTGLRTVEISRATVGDLRQESGEAILQIQGKGRDSKDDF 195 Query: 240 ---------------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN- 283 L+ + + + + S K + ++ Sbjct: 196 VLLVDETLRPLRKYLASRGALSEKDPLFSSTSNRTNGEPLKERTISWIIKETLRRIDIDD 255 Query: 284 --KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334 +AH +R + ++S GA+ + A Y +RI+ G + Sbjct: 256 SRLTAHSLRHTAVSLSIKNGASLIQAQAMARHSDPKTTMIYFHNHERIKSGAE 308 >gi|134044556|ref|YP_001101862.1| phage integrase [Yersinia ruckeri] gi|133904919|gb|ABO40936.1| phage integrase [Yersinia ruckeri] Length = 336 Score = 97.9 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 39/281 (13%), Positives = 94/281 (33%), Gaps = 31/281 (11%) Query: 88 AVNSRISFESYFDQIIRKSG-----DFDYRKITTKHIRSGVESRKHT---PSSAIQFLTS 139 + SR + S+ + + + G D + + HI + +E P++ +L++ Sbjct: 53 SKRSRQTMSSFLNIVAKMIGFQNLRDCAWSSMRRHHILAVLEMLGDAGKAPATINTYLSA 112 Query: 140 MRVLFKWAVRQEYVAINPCLSVER---------PKRKTEGIRPWTKEDMQQFKSFWSEGS 190 ++ + A + + + +++ PK + ++G Sbjct: 113 LKGVALEAWTMKQIDTDSFQHIKQVRSVRGSRLPKGRALERHEIRSLFFTCESDSSAKGL 172 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQ-HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249 + LL GLR S+ ++ + + K +P G K L Sbjct: 173 RDAAILGVLLGCGLRRSEIVALDMESMIYKDRALKVLGKGNKERMAYVPGGAWKRLDKWV 232 Query: 250 -----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATIS 297 + F + ++M+ + + +AG+ K + H +R+ A+ Sbjct: 233 EEVRGTHEGPLFPRIRRFDDVTGERMSDQAIYHILETRRVEAGLEKFAPHDLRRTFASSM 292 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSR 337 D G + G ++ + Y + D R++ + Sbjct: 293 LDNGEDIVTVKDAMGHSSIATTQKYDRRGDERLKRASQRLD 333 >gi|260664378|ref|ZP_05865231.1| Lj928 prophage integrase [Lactobacillus jensenii SJ-7A-US] gi|260562264|gb|EEX28233.1| Lj928 prophage integrase [Lactobacillus jensenii SJ-7A-US] Length = 372 Score = 97.9 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 49/357 (13%), Positives = 108/357 (30%), Gaps = 37/357 (10%) Query: 9 PFVTKERTRHGKIIYYFRKGHGR-RIRLPYPHESTFIPAYMSALTGSTPKREYINSP--R 65 + K T+ G + Y F+ G + Y A R + + Sbjct: 6 KRIEKYETKKG-VRYRFKTYLGTDETGKAIKITRSGFLNYKEAKESFDLLRAKGLNEYVK 64 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNS-RISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 K L L + + + ++ + + Y + + + G+ KI ++ V Sbjct: 65 AKQIKLDDLFQIWFDTYKLQ-VKESTAEKTRQVYINHLHKYYGNTYVDKIQQASLQKFVS 123 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK- 183 + + + + +FK A+ Y++ NP +V PK+ R T+ + + Sbjct: 124 TLPKELVNFRDVTSLLNRIFKLAISLNYISNNPLKNVIIPKKTARKRRDTTQNFYDKNEL 183 Query: 184 -----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ----------- 227 + S + + F L +G+R ++ + + + I Sbjct: 184 KSFLNAAQSTNYKYYVYFLLLASTGIRKGEALALTWKDINFSSNYININKTLAYGLHGKY 243 Query: 228 --KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA--------KA 277 + + K L + + N + Sbjct: 244 VVQPPKTAHSKRKVPLSKNLKSELLNYQKQDTKNKYLFHTENGDYLRLTKPQQWLKIIYR 303 Query: 278 TKAGVNK-SAHGVRKFSATISADAGATAH--ELMATYGWKTVDQA-ETYTKGADRIR 330 + K + HG R A+I ++ + ++ A G +TV YT + + Sbjct: 304 KNPELKKITIHGFRHTFASILIESNPSIKPTDVQAILGHETVQMTLNIYTHATQKGK 360 >gi|255692292|ref|ZP_05415967.1| putative integrase/recombinase y4rA [Bacteroides finegoldii DSM 17565] gi|260622025|gb|EEX44896.1| putative integrase/recombinase y4rA [Bacteroides finegoldii DSM 17565] Length = 413 Score = 97.9 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 41/272 (15%), Positives = 87/272 (31%), Gaps = 21/272 (7%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 ++++Y L+ + +E F +R + +I+ + + +S Sbjct: 112 IMTKYLHLLEEQRLSPKTIDGYEHVFSYFLRHLSLRNVSRISDIGEDDVLTFISSSQNSK 171 Query: 134 IQFLTSMRVLFKWAVRQEYVAIN--PCLSVERPKRKTEGIRPWTKEDMQQFK----SFWS 187 + L +MR ++ Q+ + N + R K + +T E++ Q + Sbjct: 172 QRVLATMRAFCRYLYEQKLINKNIDYVIGRNRYIVKEKLPSTYTCEEVLQIESSVNQSTP 231 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP--DGFMKLL 245 G + GLR SD +L + I+ + T +ELP + + Sbjct: 232 VGKRDYAMLLLATRLGLRSSDIAGLQFSNLDWDRNIIRLIQYKTKREIELPLLKDVGEAI 291 Query: 246 AMTPIGKETFFINND--------KQKMNATQFSIWFKAKATKAGVN-----KSAHGVRKF 292 + +N S+ + + ++ K H +R Sbjct: 292 INYVKYGRPSSSSKQIFLSSLAPYNPVNGAVVSLSVRKIICHSRIDTRDRKKGPHAMRHT 351 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324 A+ G + + T G KT Y + Sbjct: 352 LASQLLRNGISLPVISETLGHKTTQTTMGYLR 383 >gi|298244935|ref|ZP_06968741.1| integrase family protein [Ktedonobacter racemifer DSM 44963] gi|297552416|gb|EFH86281.1| integrase family protein [Ktedonobacter racemifer DSM 44963] Length = 389 Score = 97.9 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 52/363 (14%), Positives = 110/363 (30%), Gaps = 48/363 (13%) Query: 19 GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78 G+ + G G+R Y + A L ++ T K ++ + Sbjct: 28 GRWVARVPLGKGKRKEEYYKTKQEAERAKRRMLNERDA----GKLVTEQEQTFKDYLAYW 83 Query: 79 RKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIR---SGVESRKHTPSSAI 134 + ++ + I + Y + +II RK+T + + E K +P++ Sbjct: 84 LNAHR-TTVRKTTYIMYSKYLETRIIPVLVHVGLRKLTLEMFQSLYQKWEQEKLSPNTIR 142 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194 + AV+ + +A NP +V+ PK + I + E++++ E Sbjct: 143 LIHGIISEALNDAVKWKKLAYNPAQNVKLPKPRKTKIYVLSDEEIERLLQCAQE-MHLHA 201 Query: 195 AFEFLLYSGLRCSDSCRAGVQHL----------------------QNNIFSIKTQKTGTI 232 F L G+R + + + + Sbjct: 202 LFRMALLLGMRAGELLALRWSDINFKKRALTIQRTVSYVNDPAIGHYDFHVGPPKTEAGE 261 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKM-------------NATQFSIWFKAKATK 279 T+ LP + +L + +++ K ++F Sbjct: 262 RTIHLPLDIVDVLLEHREKQTQMRVSSPHWKDQDLVFCTRFGNYLTPASVRVFFDRLLKA 321 Query: 280 AGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGA-DRIRLGIKNS 336 AG+ H +R ++ I M G ++D + TY D + + Sbjct: 322 AGLEHMKFHALRHNASRILRQLKIDPVVRMEMLGHTSLDMTDGTYGHATRDMHKEAAEEI 381 Query: 337 RRI 339 R+ Sbjct: 382 NRL 384 >gi|148553081|ref|YP_001260663.1| phage integrase family protein [Sphingomonas wittichii RW1] gi|148498271|gb|ABQ66525.1| phage integrase family protein [Sphingomonas wittichii RW1] Length = 451 Score = 97.9 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 47/361 (13%), Positives = 91/361 (25%), Gaps = 45/361 (12%) Query: 18 HGKIIYYFRKGHGRRIR-----LPYPHESTFIPAYMSALTGSTPKREYINSPR---KKPT 69 GK Y + G R R L L G + + R + Sbjct: 36 SGKRSYVIQYRSGGRSRRYTIGLHGVWTPETARQEAKILFGRIAQGDDPAEERQLNHRAI 95 Query: 70 TLKWLISEYRKSAHW--------GSLAVNSR-ISFESYFDQIIRKSGDFDYRKITTKHIR 120 T+K L + Y + I+ G + +T + Sbjct: 96 TIKELCALYVADLEAGLILGKGGRPKKPGTIVTDMGRIRRHIVPLIGRRKVKDLTKADVN 155 Query: 121 SGVESR--------------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 ++ + +A + + + + +A+ + NP Sbjct: 156 RVLKDIMAGKTAVVAKTKKLRGKAIVRGGVGTATRTIGLLGGILTYAIEAGIIDTNPAHG 215 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL-----YSGLRCSDSCR--AG 213 + +PK R E + + R A + +G R + Sbjct: 216 IRKPKDNVRDRRLTESEYRLLGQIIRDAKEEGRYAVVAEITRVIALTGCRRGEIINLART 275 Query: 214 VQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273 + + + K G + L A T+ + F + Sbjct: 276 EADIGASCLRLDDTKEGKSVRPVGLPAVEALEARLDATTGTYLFPGQGEDNAFGCFPTHW 335 Query: 274 KAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 K + + + H +R A+I+ D G T + A G Y D + Sbjct: 336 KKLIENTPLEDVTPHVLRHSFASIANDLGFTEVTIAALLGHAKGSVTGKYIHTLDTALIM 395 Query: 333 I 333 Sbjct: 396 A 396 >gi|88704224|ref|ZP_01101938.1| site-specific recombinase IntIA [Congregibacter litoralis KT71] gi|88701275|gb|EAQ98380.1| site-specific recombinase IntIA [Congregibacter litoralis KT71] Length = 330 Score = 97.9 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 33/261 (12%), Positives = 72/261 (27%), Gaps = 12/261 (4%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE-SRKHTPSSA 133 I ++ S +V+++ + + RK D + K R+ ++ S Sbjct: 60 IEQFLNHLTVRSCSVSTQRVALNALVYLYRKFLAVDVGDLEFKPARANRRLPVVYSRSEV 119 Query: 134 IQFLTSMRVLFKWAVRQEY---VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 L+ ++ + + V Y + LS+ + + Sbjct: 120 AAILSKLKGVHRLMVALMYGSGMRSAELLSLRVKDIDFDSNNIIVRSGKGNKDRSTMLPQ 179 Query: 191 QPRLAFEFLLYSG-LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249 + A + + + L + G + + T + P Sbjct: 180 RLVPALKRQICTVELLHAQDLADGFGAVYLPDALERKYPNAAEETAWQFLFPASRIGRDP 239 Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHEL 307 + T + + AG++K +H R AT + G + Sbjct: 240 RSGVLRRHHLH-----PTALTRQIRRAVRNAGIHKPARSHSFRHSFATHLLEDGYDLRTI 294 Query: 308 MATYGWKTVDQAETYTKGADR 328 G + E YT +R Sbjct: 295 QELLGHSDITTTEIYTHVVNR 315 >gi|323965036|gb|EGB60497.1| phage integrase [Escherichia coli M863] Length = 387 Score = 97.9 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 49/378 (12%), Positives = 107/378 (28%), Gaps = 56/378 (14%) Query: 17 RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76 R+ + +RI+ A T + Sbjct: 6 RNEIWYASYSLPGEKRIKESL-GTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEACL 64 Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS----- 131 + + S S +S + + + I+ I S V + + Sbjct: 65 RWLEEKADKK----SLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWK 120 Query: 132 ------------------------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167 + + L ++ + + A +++ + ++ P + Sbjct: 121 QKVQAAIRKGKEPPVYEPKPVSTQTKAKHLAMIKAILR-AAERDWKWLEKAPVIKIPAVR 179 Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227 + +R KE+ ++ E + +F L +GLR S+ Q + Sbjct: 180 NKRVRWLEKEEAKRLIDECPE--PLKSVVKFALATGLRKSNIINLEWQQIDMQRRVTWVN 237 Query: 228 KT----GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI------------ 271 I V L D K+L + + K A S Sbjct: 238 PEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKT 297 Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 + + +AG+ + H +R A+ +G L GW++++ Y A Sbjct: 298 SWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNH- 356 Query: 331 LGIKNSRRISSVVDSDDP 348 +++R+I + + P Sbjct: 357 -LTEHARKIDDIFGDNVP 373 >gi|257085325|ref|ZP_05579686.1| phage integrase [Enterococcus faecalis Fly1] gi|256993355|gb|EEU80657.1| phage integrase [Enterococcus faecalis Fly1] Length = 400 Score = 97.9 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 52/390 (13%), Positives = 105/390 (26%), Gaps = 71/390 (18%) Query: 17 RHGKIIYYFRKGHGR--------RIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 ++G+ + + +GR +I + G E++ + Sbjct: 2 KNGQERWEYFVSNGRSNGTGRQQKIHKRGFRSHKEALKAAKIIEGQIASEEFVK-ENPQK 60 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR- 126 T+ ++ + ++ SRI + I G++ K + + S Sbjct: 61 MTISKFMNIWINEYK-NNVKEGSRIVYRDAIRMYIDPYIGNYQLNKYKPADHQKFINSLF 119 Query: 127 ----------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP---------KRK 167 + ++ ++ FK A + YV NP VE P K K Sbjct: 120 TNKELGKNKNGLSYNTVKIVNAALSNAFKKAQKLGYVKSNPTYLVEFPLDKVKEKTNKEK 179 Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227 +E++ + + + F + GLR + + + Sbjct: 180 KLEFYTLEQENLFLDTARNFDEYIWYVFFLIIFDLGLRKGEVMALRWFNFDFKDDILTFD 239 Query: 228 KTGTIITVELPDGFMK----------------------------------LLAMTPIGKE 253 K + + +L MT ++ Sbjct: 240 KQRLYRKEQPGQVILDDVKTDAGKRSLKMTNRVRNSVLELYSINYDLTSNVLPMTNSNQD 299 Query: 254 TFFINNDKQ----KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELM 308 FIN+ + + + KA + K H R +A AG ++ Sbjct: 300 FLFINHRGKNVGLPIRQRSVDTAWHRIIQKANLPKIRIHDGRHTNAARLRQAGVPLEDIK 359 Query: 309 ATYGWKTVDQAETYTK-GADRIRLGIKNSR 337 G K V E Y A+ + Sbjct: 360 DMLGHKNVKTTEIYAHVSAEVKERAVNKLE 389 >gi|220903716|ref|YP_002479028.1| hypothetical protein Ddes_0438 [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868015|gb|ACL48350.1| hypothetical protein Ddes_0438 [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 337 Score = 97.9 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 41/343 (11%), Positives = 103/343 (30%), Gaps = 26/343 (7%) Query: 17 RHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 + G + + R+ + + + + + + + + + TTL Sbjct: 6 KRGDLQWEARIRRKGWP-VTCKTFNTKSDAEKWARDIENEMDRGVFTSRTEAENTTLNEA 64 Query: 75 ISEYRKS--AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHT 129 + + + + + + + +I K I +K I ++ R Sbjct: 65 LERFIAEYVPRYNNPKLETIKARALQRRKIATKF----MAAIRSKDIADFMQERAAEGVA 120 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 ++ L + +F A+ + PK K R E ++ + + Sbjct: 121 GNTIRLDLALISRVFNVAISSWGMESLRNPVSRIPKPKVSSGRTRRLEGDEEERLLAACS 180 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAM 247 R F + + +R + Q++ + + K TV L +++L Sbjct: 181 DSLRPIVRFAIETAMRRGEMASLTWQNIDLEKSTAYLPKTKNNEERTVPLSPAAVQILKN 240 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAG-ATAH 305 G+ ++ + F K G+ + H +R + + + Sbjct: 241 LEKGESARVFQ-----LSDVSITQAFIKTCQKVGIEGLTFHDLRHEATSRLFERTDLDIM 295 Query: 306 ELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 E+ + G KT+ Y+ R++ + P Sbjct: 296 EIKSITGHKTLQMLARYSHLRTYK-----LVDRLAGARRGETP 333 >gi|323139403|ref|ZP_08074453.1| integrase family protein [Methylocystis sp. ATCC 49242] gi|322395335|gb|EFX97886.1| integrase family protein [Methylocystis sp. ATCC 49242] Length = 394 Score = 97.9 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 49/358 (13%), Positives = 119/358 (33%), Gaps = 33/358 (9%) Query: 14 ERTRHGK----IIYYFRKGHG--RRIRLPYPHESTFIPAYMSA------LTGSTPKREYI 61 + T G+ + Y + G G R+ + + T A A G + Sbjct: 34 KVTPKGRKVFLVQYRPKVGGGNARKYTIGQYGKLTPQQARAEAMRVLAEREGGRDPQAER 93 Query: 62 NSPRKKPTT--LKWLISEYRKSAHWGSLAVN-SRISFESYFDQIIRKSGDFDYRKITTKH 118 + + + + ++ L+ ++ + + + + +++ G ++ Sbjct: 94 QAKKLEVMSQRVEDLVDDFINRHVSQNRSASETIRILRR---EVLPDFGTRAVSELCRAD 150 Query: 119 IRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + + + + P A + ++R W V + + +PC + P ++ R + Sbjct: 151 VDRLIHNIQARGAPIMANRAFAAIRKFLAWCVGRGILENSPCEGMRAPSKERSRERVLSD 210 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLL-YSGLRCSDSCRAGVQHLQNNIFSIKTQ----KTGT 231 E+++ P + +L +G R ++ L + K G Sbjct: 211 EELKSILVAARTMGHPFGSIVQVLGLTGQRRNEVGLMTWAQLDLSNGQWVIPAERAKNGK 270 Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVR 290 V L + L++ +P + F N+ K+ +S +G+N + H +R Sbjct: 271 SHVVHLSEEAKALISSSPRLGDLVFSNDGKRPF--QGYSKCKSRLDQVSGINNWTLHDLR 328 Query: 291 KFSATISADAGATAHELMATYGWKTVD---QAETYTKG--ADRIRLGIKNSRRISSVV 343 + + A G H ++ A Y + D R ++ R + + Sbjct: 329 RTVVSGMARLGIPPHVADKILNHQSGSIGGVAAIYQRHEFLDERRDALEIWGRHVAAL 386 >gi|262382327|ref|ZP_06075464.1| integrase [Bacteroides sp. 2_1_33B] gi|262295205|gb|EEY83136.1| integrase [Bacteroides sp. 2_1_33B] Length = 310 Score = 97.9 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 90/301 (29%), Gaps = 27/301 (8%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVE---S 125 L + Y +S S++ + +R G Y +I + + + Sbjct: 6 LAEGMRMYIARLREQG-RYSSAKSYQDALNSFLRFCGQEVIPYTRIDREMLLRYQDYLRD 64 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 R+ + ++ ++ +R ++ A+ + L + + + Sbjct: 65 RECSWNTVSTYMRRIRRVYGLAMENGEAPFSRYLFKGIFMGVKSKQKKALPTESLRLLMT 124 Query: 186 WSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 R L+ G+ D ++N + QKTGT + VE+ Sbjct: 125 APLDDSGLRKTQRALCLMFLFCGMAFVDFAHLKKSDIRNGVLRYNRQKTGTPMLVEIQPV 184 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQ--------------FSIWFKAKATKAGVN--K 284 +LLA G F+ K A GV Sbjct: 185 AKELLAALMTGTLRDSPYLFTFLSGTKTGEEAFREYTSALADFNSSLKELANACGVTEMV 244 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 +++ +R AT + G + G +++ + Y K ++ N S+ + Sbjct: 245 TSYSIRHSFATTLKEQGVPIEMISELLGHQSIKTTQIYLKSFSLDKMSAVNKACFESIYN 304 Query: 345 S 345 + Sbjct: 305 N 305 >gi|146277418|ref|YP_001167577.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025] gi|145555659|gb|ABP70272.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025] Length = 336 Score = 97.9 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 59/346 (17%), Positives = 108/346 (31%), Gaps = 21/346 (6%) Query: 2 TPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61 + P+V + + +Y++R G F Y ++G + Sbjct: 1 MRKIGRKPYVRETKP---GFVYFYRGGKYLHRFTAPEGTEEFDRQYWEVMSGKKQE---- 53 Query: 62 NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121 + I R+S W + ++ R E + + K G D ++T I Sbjct: 54 -----AKRSWGAAIEVLRQSDRWAAKSLRYRQDLEPVLEYLGEKIGKRDVARLTQADIYE 108 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-IRPWTKEDMQ 180 ++ KH A ++ ++ K +R+ ++ NP +ER K E D Sbjct: 109 AMDRNKHRVRFANYIPVAISMIAKEVIRRRWLEDNPAKGIERLKVPKERQRPHVPWPDAA 168 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 K G RL FE + + R SD + ++ KTG + + Sbjct: 169 VVKFRAEAGDLERLIFEIGVGTVQRPSDWIGFRWGDYDGDSLVLRQGKTGKPLVLPCTVA 228 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT-------KAGVN-KSAHGVRKF 292 L + + + ++ A + G+ H +R Sbjct: 229 LKAALDKAKAALPFAPMPSRHIITKQDGSRMDYRRLAEIMLAERARLGLEAYDLHALRYR 288 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338 A AG E+MA G T Y A +I + + Sbjct: 289 GVMELAWAGCDDDEIMAYSGHSTKAMVRKYAGEARQIMRARQARGK 334 >gi|325696212|gb|EGD38103.1| phage integrase family prophage Sa05 [Streptococcus sanguinis SK160] Length = 386 Score = 97.9 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 43/373 (11%), Positives = 108/373 (28%), Gaps = 52/373 (13%) Query: 11 VTKERTRHGKIIYY------FRKGHGRRIRL---PYPHESTFIPAYMSALTGSTPKREYI 61 + + + + G +Y + G++++ + A + Sbjct: 8 IVEVKKKDGSKVYRASVYLGVDQVTGKKVKTSITGRTRKEVKSKAQHAQFDFKLNGSTVH 67 Query: 62 NSPRKKPTTLKWLISEYRKSAHWGSLAVNS-RISFESYFDQIIRKSGDFDYRKITTKHIR 120 + R K + L + +S + + + + +I G K+ +I+ Sbjct: 68 KAVRVKNY--QELADLWLESYQLT-VKPQTFIATKRMVYSHLIPVFGKMKLDKLAASYIQ 124 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK---- 176 V + + K+ V + + NP + P++ + Sbjct: 125 GFVNDLSSHLVHFGVVHSINSRILKYGVSLQLIPFNPARDIILPRKPKRENKSIKFISPE 184 Query: 177 ------EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230 + M++ + + LL +G R ++ + +I K Sbjct: 185 DLKTLLDYMEKLAFKKYSYFFDYMLYSVLLATGCRFGEAVALEWSDIDLENATISISKNY 244 Query: 231 TI--------------ITVELPDGFMKLLAMTPIGKETFFI------------NNDKQKM 264 + + + +L + + FI K+ Sbjct: 245 NRLVDLVGPPKSKAGVRVISIDRKTVNMLKLYKNRQRQLFIEDGARAPSVVFATPTKKYQ 304 Query: 265 NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TY 322 N + +AG+ + + H R A++ +AG + EL G T+ Y Sbjct: 305 NMATRQDSLDRRCKEAGIPRFTFHAFRHTHASLLLNAGISYKELQYRLGHATLAMTMDIY 364 Query: 323 TKGA-DRIRLGIK 334 + + D+ + + Sbjct: 365 SHLSKDKEKEAVS 377 >gi|323484865|ref|ZP_08090221.1| phage integrase family Integrase/recombinase [Clostridium symbiosum WAL-14163] gi|323401861|gb|EGA94203.1| phage integrase family Integrase/recombinase [Clostridium symbiosum WAL-14163] Length = 279 Score = 97.9 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 29/257 (11%), Positives = 76/257 (29%), Gaps = 15/257 (5%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSA 133 + + + ++ + + I ++T + + + E + +S Sbjct: 11 DLFCEHLEQDEKSRHTIEKYRRDLRKFIDFING---GEVTKERVINFKEYLVENYALNSV 67 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193 L S+ +A QE+ ++ + R ++++ + + R Sbjct: 68 NSILASINHFMVFAGWQEFRVK---QLKKQRQVYCPEERELSRQEYFELIRTAKREGKER 124 Query: 194 LAFEFLL--YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP--DGFMKLLAMTP 249 + +G+R S+ VQ +++ + + + + M + Sbjct: 125 ICLIIQTIGSTGIRISELPSITVQAVKDGGVQVDCKGKSRQVLMPKKLTMKLMHYIKKEK 184 Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHE 306 I F ++ + K KAG+ + H +R A + Sbjct: 185 IRSGPVFRTKQGNPIDRSNIWKEMKKICRKAGIKEKKVFPHNLRHLFACSFYQMEKDIAK 244 Query: 307 LMATYGWKTVDQAETYT 323 L G ++ Y Sbjct: 245 LADLLGHSNINTTRIYI 261 >gi|319891787|ref|YP_004148662.1| Integrase [Staphylococcus pseudintermedius HKU10-03] gi|317161483|gb|ADV05026.1| Integrase [Staphylococcus pseudintermedius HKU10-03] Length = 368 Score = 97.9 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 47/357 (13%), Positives = 97/357 (27%), Gaps = 38/357 (10%) Query: 1 MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPK-RE 59 MT LRL + K+ R YYFR + + A+ E Sbjct: 1 MTHDLRLAHNIYKDSKRG---TYYFRITYYDKTNKRQYITRKGFKQRKEAVKKCNEIMDE 57 Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119 + L+ EY + + + + + ++ D K+TT+ + Sbjct: 58 LEGIGQLNRLPFDKLVEEYIEWYSARRKSSSVKALKTHTNNHLLPYFKSMDVFKMTTQDV 117 Query: 120 RSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + H+ + + L A++ + N V + +++ + Sbjct: 118 MKFQNKKLKEGHSGDYLKKMHVYLVSLLNHAMKFYDLKQNVASLVGNFEIESQKRLNYWT 177 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---- 232 + Q +L F+ L YSG R + + + + I KT Sbjct: 178 LEQFNEFYDALATQQQKLFFKLLFYSGARKGEIRALTWRDVNFDDEFIHINKTDYHGEVT 237 Query: 233 ------------ITVELPDGFMKLLAMTPIGKETFFIN----NDKQKMNATQFSIWFKAK 276 + + + L + + + WF Sbjct: 238 APKTKSAIRDIYLPAHMMNDIKNYLNWYKENNIYKDDYVLFGTFFKAYSESTIDRWFTTA 297 Query: 277 ATKAG---------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R A++ + GA+ + G + E Y + Sbjct: 298 LKVLDNQLPDGQTFPRIVIHELRHSHASMLVNHGASIMVIAQRLGHADSN--EVYNR 352 >gi|317058175|ref|ZP_07922660.1| DNA integration/recombination/inversion protein [Fusobacterium sp. 3_1_5R] gi|313683851|gb|EFS20686.1| DNA integration/recombination/inversion protein [Fusobacterium sp. 3_1_5R] Length = 325 Score = 97.9 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 48/311 (15%), Positives = 111/311 (35%), Gaps = 23/311 (7%) Query: 50 ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF 109 AL+ ++ T ++L ++ +L+ NS ++ ++ Sbjct: 18 ALSKYNLVKKGKYEVVVSENTNEFLWKKFFIGKRIENLSENSLKVYKDNLERFDSVI-KK 76 Query: 110 DYRKITTKHIRSGVESRKHTPSSAI-----QFLTSMRVLFKWAVRQEYVAINPCLSVERP 164 ++ +TT+ +R + + SS ++ F++ V + + NP ++ Sbjct: 77 NFLDVTTEDVRFYIATVISKNSSVKETYLDNIRRFLKTFFQFLVDEGLIKTNPVTRIKPI 136 Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 + T P++ ++++ ++ + E L+ + R + + + SI Sbjct: 137 RGNTSEKLPFSNMEIEKLRNAC-SSCLEKAVIEILISTAFRRQELAEIKLSDIDFEKGSI 195 Query: 225 KTQKTGTI--------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS 270 +T G I + K + + GK F + +A+ Sbjct: 196 RTIGKGKKLGYGFLNAKALLALIEYIEKERESKSVFLFIRGKNKRFREKAGEPYDASSLY 255 Query: 271 IWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 K KAGV + H R+ +AT + D G ++ + + YT ++ Sbjct: 256 ALIKKIGKKAGVTHVHPHRFRRTAATKALDRGLGLEDVKELLRHEDIKTTLIYT-TLNKD 314 Query: 330 RLGIKNSRRIS 340 RL K++R + Sbjct: 315 RLKDKHNRFLD 325 >gi|302346947|ref|YP_003815245.1| site-specific recombinase, phage integrase family [Prevotella melaninogenica ATCC 25845] gi|302150881|gb|ADK97142.1| site-specific recombinase, phage integrase family [Prevotella melaninogenica ATCC 25845] Length = 407 Score = 97.9 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 36/295 (12%), Positives = 96/295 (32%), Gaps = 23/295 (7%) Query: 69 TTLKWLISEYRKSAHW---GSLAVNSRISFESYFDQIIRKS----GDFDY--RKITTKHI 119 TT + +Y S +L + ++ D ++T+ + Sbjct: 107 TTFLPVFDKYIDSITQQVGKTLTKGTFYKYKVVRQNFQDFLQAKYHRKDIGQTELTSAVV 166 Query: 120 RSGVESR----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 + ++ + L +++ + +A + + +P + + + + T Sbjct: 167 QDFELYLTSVVGGVHNTTTKKLRNLKTVVNYARNRGLIMHDPFANHK-LRYELVDRGYLT 225 Query: 176 KEDMQQFKSFWSEGSQPRL---AFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTG 230 +E++ + + + L F F ++GL D + + + T++ Sbjct: 226 EEEVLRIMKKHFDIERLELVKNIFIFSCFTGLAYIDVYNLTYDKIVTVEDRQWLITKRYK 285 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288 T + + + L + M+ + + + K A G+ K + H Sbjct: 286 TSVDENVMLLDIPLAIIRKYYDINRKGGKVFPMMSNQRINSYLKEIADLCGIKKNLTFHM 345 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI--RLGIKNSRRISS 341 R AT+S G + G + + Y + ++ R + + ++S Sbjct: 346 ARHTFATMSISKGVPMESVSKMLGHTNIRITQIYARITNKKVERDMEELAGKLSK 400 >gi|167567313|ref|ZP_02360229.1| phage integrase family protein [Burkholderia oklahomensis EO147] Length = 382 Score = 97.9 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 43/375 (11%), Positives = 89/375 (23%), Gaps = 51/375 (13%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 R Y F+ + A +P TLK Sbjct: 5 RRNNSKNWYYQFQIQGKK--FFGSTGTPNKTKAAQVEREMRNRAHAEQYLGDAQPITLKD 62 Query: 74 LISEYRKSAHWGSLAVNSRISFESYF--DQIIRKSGDFD---------YRKITTKH---I 119 + +Y ++ S N R G ++TT+ + Sbjct: 63 ALEQYVEARSETSYHRNMCSIVRKTLGYKLHPRTKGKLPCYGMSPDTLLHELTTRDFDLL 122 Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-------- 171 + ++ P++ + +R + + + E Sbjct: 123 VAKRKAEGDKPATIKHEIGLLRATINEMAKLGFKVSREIVFPELRTSYRLRYLDSNDESA 182 Query: 172 ----------RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221 R FLL +G R S+ + + Sbjct: 183 LLRELDPERLRTRINVSKPLTPEMTRNMQDNYDITVFLLDTGCRYSEVANIPWSAINIDA 242 Query: 222 FS---IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW-FKAKA 277 + +++ + L + + + N +S K Sbjct: 243 CTISLYRSKVRNEDVLHMTSRLEAILRRRWEERRTGQRYVFEDRTGNERGYSTKSIKKAI 302 Query: 278 TKAGVN-----------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 +AG+N + H +R A+ AG + +E+ G + Y + Sbjct: 303 ERAGLNDPVLVKERGGRVTLHTLRHTFASKLVKAGVSLYEVSVLLGHSDPKMTQRYAHLS 362 Query: 327 --DRIRLGIKNSRRI 339 D R +K + Sbjct: 363 PNDASRKAVKVIDSL 377 >gi|4520380|dbj|BAA75916.1| similar to integrase [Pseudomonas putida] Length = 399 Score = 97.9 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 54/361 (14%), Positives = 107/361 (29%), Gaps = 44/361 (12%) Query: 1 MTPSLR------LPPFVTKERT-RHGKIIYYFRKGHGRRI-RLPYPHESTFIPAYMSALT 52 M P R LPP + ++ R+G Y +R R+ L A + + Sbjct: 32 MAPRPRNPGSKDLPPNLYRKTDKRNGVTYYTYRDPVSDRMFGLGSDKAKAIAEAVSANMA 91 Query: 53 GSTPKREYINS----PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD 108 P I EY L+ +S + +++ + G+ Sbjct: 92 LQVAPPTLSARIAPEPSAPDRKFSEWIVEYFADLKDRELSESSMRNLRMRLNRVEKAFGE 151 Query: 109 FDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 R +TT I + + ++ A + +R LF A+ + +V NP + + + Sbjct: 152 RGIRTLTTMDIADYLSTYVKEGKAQMARAMRSLLRDLFMGAMARGWVDYNPVEATKAARV 211 Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226 K + R + ++ + A E L +G R D + + + Sbjct: 212 KIKRQRLTLELWKAIYEEAAQ--PWLKRAMELALITGQRREDIASFVFRDEVDGFLQVVQ 269 Query: 227 QKTGTI--------------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA 266 KTG L+ + + Sbjct: 270 SKTGARLRISTSVTLECISLSLGEVIRRCRDRVLSKHLVHHHRTISRAKAGSPIMLDTIS 329 Query: 267 TQFSIWFKAKATKAGVNK-----SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321 +F+ A K G++ + H R +A + + G + G ++ + Sbjct: 330 KEFAAARDRAAVKLGLDLGASPPTFHEQRSLAARLHDEEG---RDAQRLLGHRSAKMTDL 386 Query: 322 Y 322 Y Sbjct: 387 Y 387 >gi|302559765|ref|ZP_07312107.1| integrase [Streptomyces griseoflavus Tu4000] gi|302477383|gb|EFL40476.1| integrase [Streptomyces griseoflavus Tu4000] Length = 392 Score = 97.9 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 49/378 (12%), Positives = 105/378 (27%), Gaps = 38/378 (10%) Query: 1 MTPSLRLPPFVTKERT-RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE 59 M + + R G+ + G ++ + Sbjct: 1 MAGKRKSRRGFGRVRKLPSGRFQVRYPGPDGVLRPGDRTFATSTDADRWLMRKRIEIEEG 60 Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKH 118 P + TT++ + + + L ++ S+ S + I+ GD + + Sbjct: 61 RWLDPAEGQTTVRDWSARWLAAVSPQ-LKHKTQASYRSLINSLIVPALGDRELSGLRPIT 119 Query: 119 IRSGVESRKHTPSSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 + V K SA + + + + AV + + PC V+ P+ T Sbjct: 120 VAEWVGGMKSRGLSASRIRQAYRVLSQIMRSAVDNDMIPQTPCRGVKLPRMPQTEPHILT 179 Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--- 232 ++ + S L L Y+GLR ++ + + + + Sbjct: 180 --PLEASRIVRSAAKPHDLLIALLAYAGLRVGEAFALRRVDIDVSGGFVLVDENLAEANG 237 Query: 233 --ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF-----------SIWFKA---- 275 + +LL + P + + + ++ Sbjct: 238 TLVFDTPKSHQKRLLRVGPSLAKRLGRHLETLPGGDDALLFLTPGGKPLRYNQWRKAYFD 297 Query: 276 -KATKAGV-NKSAHGVRKFSATISADA-GATAHELMATYGWKTVD-QAETYTK-GADRIR 330 + AG+ + + H +R T AD G G Y + A R Sbjct: 298 PAVSAAGLTDVTPHDLRASHGTWVADRYGV--MTAAHRLGHSNASVTTRHYARPVAGRDD 355 Query: 331 LGIKNSRRISSVVDSDDP 348 + + S + DP Sbjct: 356 QVAEAAD---SWLSGHDP 370 >gi|170694112|ref|ZP_02885267.1| integrase family protein [Burkholderia graminis C4D1M] gi|170696177|ref|ZP_02887311.1| integrase family protein [Burkholderia graminis C4D1M] gi|170138905|gb|EDT07099.1| integrase family protein [Burkholderia graminis C4D1M] gi|170140852|gb|EDT09025.1| integrase family protein [Burkholderia graminis C4D1M] Length = 291 Score = 97.9 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 35/281 (12%), Positives = 83/281 (29%), Gaps = 24/281 (8%) Query: 79 RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQ 135 LA ++ + Q G T + +R +P S Sbjct: 16 IDDMRMRKLAPQTQAGYVRVVRQFAAFLG-RPPDTATVEDLRRYQLHLVDHGISPVSLNA 74 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195 +T ++ F+ + Q + ++ + + +++ + + + + A Sbjct: 75 AITGLKFFFEITLNQPGLM----ARMQPVRVPRTLPVVLSPDEVAR-LIAAAGNLKHQTA 129 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP---------DGFMKLLA 246 +GLR S+ V + + +++ ++ + ++ Sbjct: 130 LSVAYGAGLRASEVVALKVGDVDSQRMTLRIEQGKGRRDRYAMLSPVLLERLRVWWRVAH 189 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATK-----AGVNKSAHGVRKFSATISADAG 301 E ++ ++ +A G S H +R AT + Sbjct: 190 AQGRMLEGGWLFPGLDPVDPLSTRQLNRAIHAAAEEAHLGKRVSMHTLRHSFATHLLEQK 249 Query: 302 ATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSRRISS 341 + G K ++ YT+ A D +R I R+ S Sbjct: 250 EDIRVIQVLLGHKKLETTSLYTQVATDLLRKVISPLDRLPS 290 >gi|257091622|ref|YP_003165265.1| hypothetical protein CAP2UW1_4693 [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257048631|gb|ACV37818.1| hypothetical protein CAP2UW1_4693 [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 337 Score = 97.9 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 34/317 (10%), Positives = 79/317 (24%), Gaps = 39/317 (12%) Query: 62 NSPRKKPTTLKWLISEYRKSA--HWGSLAVNSRISFESYFDQIIRK----SGDFD----Y 111 K + L+ + +L+ + ++ F + G Sbjct: 2 RRQPKPAPSFPALVQAFFVEHLTQQRALSPQTVAAYRDAFVLFLGFAEVRLGRSPALITL 61 Query: 112 RKITTKHIRSGVE----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167 IT I + ++ R ++ S L ++R K+A ++ ++ K Sbjct: 62 ADITPDLITAFLDHLERKRHNSVRSRNGRLAALRSFLKFAAHRDVTSLQVIEHALGVPAK 121 Query: 168 TEGIRPWTKEDMQQFKSFW------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221 ++ + + + L +G R S+ V + + Sbjct: 122 RFERPMLGYLSREEMLAVIGTPDGTWFSQRDHVLVLLLYNTGARVSEIVGVKVGEVVLDD 181 Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK---------MNATQFSIW 272 + G + + + + M+ Sbjct: 182 GAACVHLHGKGRKQRSVPLWRSTIRAIRAWIKRNPQFDSDSPLLHNRDGQAMSRWNVMQR 241 Query: 273 FKAKA--------TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 A + S H +R +A AG + G ++ Y Sbjct: 242 LDRAVQVATESCPELATRHISPHVIRHTTAMHLLQAGVDISVIALWLGHESPATTHQYV- 300 Query: 325 GADRIRLGIKNSRRISS 341 AD + + R+ Sbjct: 301 EADLA-MKERALARLQE 316 >gi|189461279|ref|ZP_03010064.1| hypothetical protein BACCOP_01929 [Bacteroides coprocola DSM 17136] gi|189461291|ref|ZP_03010076.1| hypothetical protein BACCOP_01941 [Bacteroides coprocola DSM 17136] gi|189431991|gb|EDV00976.1| hypothetical protein BACCOP_01941 [Bacteroides coprocola DSM 17136] gi|189432021|gb|EDV01006.1| hypothetical protein BACCOP_01929 [Bacteroides coprocola DSM 17136] Length = 337 Score = 97.9 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 42/260 (16%), Positives = 81/260 (31%), Gaps = 16/260 (6%) Query: 84 WGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVESRKHTP-----------S 131 + LA I ++ + R G + ++ R +E + P + Sbjct: 65 FKGLADRKNIKWQHVYKHFERFVNGKCTFEEVDVDLCRKFMEYLLNAPQSIHTSQKLHIN 124 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 SA + ++ R + A R + NP ++R + ++E++ + E Sbjct: 125 SAAGYWSAFRAVLHTAYRDRKIKENPNGFLDRIECIPTMREHLSQEELIRLAETPCEEEV 184 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251 + AF F +GLR SD + Q +Q T + + Sbjct: 185 LKRAFLFGCLTGLRKSDIRQLTWQQIQPYTNGK--MFVTTRMQKTKQIVHNPISDEAYGL 242 Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMA 309 K AG+ K + H R ++ + G + A Sbjct: 243 LGERHEGLIFDGFKDKMLQGPLKRWLLAAGITKKITFHCTRHSFGSLHVEMGTDMAVIQA 302 Query: 310 TYGWKTVDQAETYTKGADRI 329 G K + + Y+K A + Sbjct: 303 YLGHKNITTTQIYSKMAAQQ 322 >gi|315648604|ref|ZP_07901701.1| integrase family protein [Paenibacillus vortex V453] gi|315275983|gb|EFU39331.1| integrase family protein [Paenibacillus vortex V453] Length = 305 Score = 97.9 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 44/293 (15%), Positives = 89/293 (30%), Gaps = 29/293 (9%) Query: 58 REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--------- 108 RE + T++ I + L + + S I Sbjct: 2 RETPGISEQGDQTIQDFIHA-LTTHE--DLNPKTLKEYASDLKHFIGWFETAYHQEEEII 58 Query: 109 FDYRKITTKHIRSGVES----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164 F + T + E+ + P++ + L +++ F+WAV + + +P V+ Sbjct: 59 FRIEDVATPTLTRYREAAQKIMELKPATINRRLITLKRFFEWAVSESRIRRDPSKPVKLV 118 Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEG--SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222 + R T ++ + G + + + ++GLR + C +Q Sbjct: 119 PEEKVSPRQMTDKEEAALVAAAEHGGSLRDQTILIVMFHTGLRSMEVCDLAPGDIQIGKR 178 Query: 223 ----SIKTQKTGTIITVELPDGFMKLLAMT-----PIGKETFFINNDKQKMNATQFSIWF 273 ++++ K V L L P F ++ Sbjct: 179 SGQLTVRSGKRNKQREVPLNATCRVALEKYLAELPPHSPFLFPSEKTGDRLTERALRHLI 238 Query: 274 KAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 + A + SAH +R + A+ H L G ++D Y K Sbjct: 239 QKYMKAARLEGLSAHDLRHRFGYVMAEN-TPLHRLAQIMGHDSLDTTMIYVKA 290 >gi|303238111|ref|ZP_07324650.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] gi|302481706|gb|EFL44762.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] Length = 407 Score = 97.9 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 35/298 (11%), Positives = 95/298 (31%), Gaps = 23/298 (7%) Query: 66 KKPTTLKWLISEYRKSAHW---GSLAVNSRISFESYFDQIIRKS------GDFDYRKITT 116 K+ TT + +Y S +L + ++ D ++T+ Sbjct: 104 KEFTTFLPVFDKYIDSITQQVGKTLTKGTFYKYKVVRQNFQSFLQAKYHRRDIGLSELTS 163 Query: 117 KHIRSGVESR----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 ++ ++ + L +++ + +A + + +P + + + Sbjct: 164 AVVQDFELYLTSVVGGVHNTTTKKLRNLKTVVNYARNRGLIMHDPFANHK-LHYELVDRG 222 Query: 173 PWTKEDMQQFKSFWSEGSQPRL---AFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQ 227 T+E++ + + + L F F ++GL D + + + T+ Sbjct: 223 YLTEEEVLRIMKKHFDIERLELVKNIFIFSCFTGLAYIDVYNLTYDKIVTVEDRQWLITK 282 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--S 285 + T + + + L + M+ + + + K A G+ K + Sbjct: 283 RYKTSVDENVMLLDIPLAIIRKYYDINRKGGKVFPMMSNQRINSYLKEIADLCGIKKNLT 342 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI--RLGIKNSRRISS 341 H R AT+S G + G + + Y + ++ + + ++ Sbjct: 343 FHMARHTFATMSISKGVPMESVSKMLGHTNIRITQIYARITNKKVEHDMEQLADKLGK 400 >gi|160874836|ref|YP_001554152.1| integron integrase [Shewanella baltica OS195] gi|160860358|gb|ABX48892.1| integron integrase [Shewanella baltica OS195] gi|315267074|gb|ADT93927.1| integron integrase [Shewanella baltica OS678] Length = 319 Score = 97.9 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 30/297 (10%), Positives = 65/297 (21%), Gaps = 50/297 (16%) Query: 80 KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 + ++ + S+ + I + T+ + + + + AI Sbjct: 13 EEMRMRGYSIRTEKSYLYWIKAFINFHHKRHPETMGTEEVAQFLTFLANQRNVAINTQKI 72 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199 + ++ L ++ + ++ + RL E L Sbjct: 73 ALNALAYLYQKHLHHELGNLGFCYATKQRYLPTVLSPSEIS--LILNELDGRDRLIIERL 130 Query: 200 LYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFM--------------- 242 SGLR S+ R +Q + +++ K L Sbjct: 131 YGSGLRVSECLRLRIQDIDIEQASLTVRDGKGHKDRQTILSHKCAIKLTAYINKAMEIQH 190 Query: 243 ------------KLLAMTPIGKETFFINNDKQKMN-----------------ATQFSIWF 273 L + Sbjct: 191 RDNQQGIGPSLPNALERKYPHAFKQHGWMFIFPSTTTCINPYTGTLCRHHLHQSVIRKAL 250 Query: 274 KAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 + K + H R AT +G+ + G V + YT + Sbjct: 251 GNAVRNIKITKRVTCHTFRHSFATHLLQSGSDIRSVQELLGHNDVSTTQIYTHVLGQ 307 >gi|329919718|ref|ZP_08276674.1| site-specific recombinase, phage integrase family [Lactobacillus iners SPIN 1401G] gi|328937237|gb|EGG33663.1| site-specific recombinase, phage integrase family [Lactobacillus iners SPIN 1401G] Length = 329 Score = 97.9 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 32/276 (11%), Positives = 76/276 (27%), Gaps = 14/276 (5%) Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119 T + ++ + + + S + + + + K + R++ T + Sbjct: 40 DTEEETNAGLTNEQFLNNFLSAKRIEGCSEKSLTYYRATIEVMTTKI-KKNVREMETDDL 98 Query: 120 R----SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 R + + + + + F W + Y+ +P + + K +T Sbjct: 99 RTYLTEYQQEKNSSKVTVDNIRRILSSFFSWLEDENYILKSPARRIHKVKAALTIKETYT 158 Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIIT 234 E +++ + E + + L +G+R + + Sbjct: 159 DESLEKMRDNCEEA-RDLALIDMLASTGMRVGELVLLNRDDINFEERECVVFGKGSKERM 217 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNAT------QFSIWFKAKATKAGVNK-SAH 287 V L + + + K + K H Sbjct: 218 VYFDARTKIHLLTYLRERTDDNPALFVSLRSPHERLKIGGVECRLRELGNKLNIEKIHPH 277 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 R+ AT++ D G +L G K +D Y Sbjct: 278 KFRRTLATMAIDKGMPIEQLQQLLGHKRIDTTLQYA 313 >gi|288904635|ref|YP_003429856.1| phage integrase [Streptococcus gallolyticus UCN34] gi|288731360|emb|CBI12911.1| putative phage integrase [Streptococcus gallolyticus UCN34] Length = 386 Score = 97.9 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 53/374 (14%), Positives = 108/374 (28%), Gaps = 55/374 (14%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKGH---GRRIRLPYPHESTFIPAYMSALTGSTPKREY 60 + P + T+ GK YY R+ G++ + T A + Sbjct: 5 KTKYP-NIYTYETKKGK-RYYVRRKFKLVGKQTEVSASGLKTVAEARQALAEIENKIANG 62 Query: 61 INSPRKKPTTLKWLISEY-RKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKH 118 PR K T+ Y G A ++ ++ S+++ ++ GD + I Sbjct: 63 DYDPR-KNMTVDDYWQIYSENRIKTGRWAPDTVMTKTSWYNHHFSKQFGDTLLKDIKRTK 121 Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV-------ERPKRKTEGI 171 + + S ++ S A + + LF+ V V + + + Sbjct: 122 YEAYISSLLNSYSKA--TVVQINALFEAMVTDAVVNGYMDKNPILKIYIGKSNIPTKKKR 179 Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 + + + + GLR S+ L+ + + Sbjct: 180 LSLEEFRAWDECARKILSNYDYTMARLTYF-GLRRSEVLGIKFSSLKLVNGRFRIFLDES 238 Query: 232 I----------------ITVELPDGFMKLLAMTPIGKETFFINNDK-------------- 261 V L + +LL + +++ Sbjct: 239 RTERRPEGGRMKTRTSKRYVLLDEETTELLQKAMMFARQIAKESNRILGQNDFIFVDEGA 298 Query: 262 -------QKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWK 314 Q + + FK + ++ ++ + H +R F AT AG + + A G Sbjct: 299 NLKKRRGQPIKYAHIATIFKKVSAESKIHATPHMMRHFFATQGQIAGVSIEHMAAALGHS 358 Query: 315 TVDQAETYTKGADR 328 T + YT D Sbjct: 359 TSYMTQQYTHIKDE 372 >gi|258453038|ref|ZP_05701031.1| integrase [Staphylococcus aureus A5948] gi|257859248|gb|EEV82103.1| integrase [Staphylococcus aureus A5948] Length = 405 Score = 97.9 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 42/401 (10%), Positives = 107/401 (26%), Gaps = 73/401 (18%) Query: 12 TKERTRHGKIIYYF--RKGH---GRRIRLPYPHES----TFIPAYMSALTGSTPKREYIN 62 +E T++ Y + R G+ + + A + + ++ + Sbjct: 3 VREITKNNSTAYRYLERYTDPLTGKYKTVSVTRNKNNVRSQKDAQLELNKIIEQRLKHNS 62 Query: 63 SPRKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDF-DYRKITTKHIR 120 + + + T E+ + + +S + + KIT +++ Sbjct: 63 TKQLENLTFHDACDEWLEHYKTHSGSKPTTIKEKKSNANTVKNAIDSKVLISKITHTYLQ 122 Query: 121 SGVESRKHTPSS--AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK-- 176 + + + S + +R +FK+A + + L +K + Sbjct: 123 NIINEWAKSHSIGHVQSLVIVIRSVFKYAFKYYDLHDISVLDKIDIPKKAQTRNELQAKR 182 Query: 177 -------------EDMQQFKSFWSEGSQPR------LAFEFLLYSGLRCSDSCRAGVQHL 217 + ++ R EF + +G+R + ++ Sbjct: 183 NNYLEDSEVKELLQCFDYLIKHKRHATRKRNYEMVKALVEFQINNGMRIGELLAIKKDNI 242 Query: 218 QNNIF---------------------SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF 256 T+ + + T+ L + LL + + Sbjct: 243 NYEDKTLDIDGTINWVTDKETGAFGVKETTKTSKSYRTIGLTTQSINLLKTLILDNKKEN 302 Query: 257 INNDKQ-------------KMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAG 301 N+ ++ + + K + +NK H +R + A G Sbjct: 303 QWNEDFIDRGYVFTNTAGSPIDLNKVNSIIKEATEISSINKRVTTHTLRHTHISTLAQLG 362 Query: 302 ATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISS 341 + G E YT D+ + ++ Sbjct: 363 INLKAIQDRVGHSDYKTTLEIYTHVTDQ--MAKDMMNKLEE 401 >gi|228941666|ref|ZP_04104213.1| Integrase/recombinase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228974593|ref|ZP_04135159.1| Integrase/recombinase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981188|ref|ZP_04141488.1| Integrase/recombinase [Bacillus thuringiensis Bt407] gi|228778388|gb|EEM26655.1| Integrase/recombinase [Bacillus thuringiensis Bt407] gi|228784996|gb|EEM33009.1| Integrase/recombinase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817878|gb|EEM63956.1| Integrase/recombinase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326942274|gb|AEA18170.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis serovar chinensis CT-43] Length = 332 Score = 97.9 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 30/316 (9%), Positives = 78/316 (24%), Gaps = 23/316 (7%) Query: 32 RIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNS 91 + R + L K+E + T+ + + L + Sbjct: 3 KKRDSLTISEDLSNVFGDRLKSDQRKKETAENRYTFNLTIDKALEIIVRQMKATGLRERT 62 Query: 92 RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQE 151 + + + + ++ HI + S + + + L ++ Sbjct: 63 INDYYIHVSHFAKITDTHYIEELNVNHIYEWLSSMNVSNQTKLTRLKCLKAFLGRCHDNG 122 Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQ---QFKSFWSEGSQPRLAFEFLLYSGLRCSD 208 ++ IN +V+ +E + A + +G+R Sbjct: 123 WIDINFWRNVKIKVDTPVKEGATDREINILLSVLDLTRFLDLRDATAILLMYQTGIRVGT 182 Query: 209 SCRAGVQH--------------LQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254 + +H ++N+ +++ +++ K Sbjct: 183 LAQLEHKHVDLEAKVLSVDGGIIKNHESIYLPFDDALARLLDVLMKQNEIIRREYQAKNG 242 Query: 255 FFINNDK-----QKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELM 308 + S A + G+ + H +R+ A GA + Sbjct: 243 YLFITKSGGSVLTSPTNNIISKRMTKHAKEYGLKNINPHAIRRGFAKNLLKKGANVALIS 302 Query: 309 ATYGWKTVDQAETYTK 324 G + Y Sbjct: 303 KALGHSDISVTTRYLH 318 >gi|262369098|ref|ZP_06062427.1| phage integrase [Acinetobacter johnsonii SH046] gi|262316776|gb|EEY97814.1| phage integrase [Acinetobacter johnsonii SH046] Length = 386 Score = 97.9 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 52/368 (14%), Positives = 101/368 (27%), Gaps = 54/368 (14%) Query: 5 LRLPPFVTKERTRHGKIIYYF-RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63 +P V R R+G I YF R+ I LP+P + I A K E+ Sbjct: 8 KSMPTGV---RIRNGAIQIYFERRKKEYNITLPHPPSAEGISAAAKIRAQLVTKAEWGIL 64 Query: 64 PRKKP------------------TTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIR 104 + + +Y K + +++ + + + + Sbjct: 65 TDSDIAEARGQLVDDDAVIVNGGILFQEVAQKYLKFCESNT---DTKKGYLNILEFHWMG 121 Query: 105 KSGDFDYRKITTKHI-RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163 I+ ++I + ++ T + L +R +F A+ +++ NP S+ Sbjct: 122 YFALMPINSISIENIKEAIIDRDFKTAKTLNNCLIPLRGVFDCAMENKFITENPLDSIRN 181 Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQ-----PRLAFEFLLYSGLRCSDSCRAGVQHLQ 218 K + + P+++ +M + +E ++G R S+ Sbjct: 182 KKVQVDIPDPFSRPEMDAILENLKTTLKGDEILYYWYYELAFWTGCRPSELIALKESDFD 241 Query: 219 NNIFSIKTQKTGTI------------ITVELPDGFMKL---LAMTPIGKETFFINNDKQK 263 K K+ V L K L + Sbjct: 242 FFSGMFKVNKSRVRGVEKNVTKTHTAREVCLNARSKKAAQELIKYKKDRNIQSKYLMLCP 301 Query: 264 MNATQF------SIWFKAKATKAGVNKSA-HGVRKFSATISADAGATAHELMATYGWKTV 316 F A G+ + R AT+ G + G Sbjct: 302 ETGEPFFNEKPPRNRLVAALKACGIRHRPAYNARHTYATMMLMDGLNPVFVSNQMGHSLQ 361 Query: 317 DQAETYTK 324 + Y K Sbjct: 362 MMMKRYAK 369 >gi|77360404|ref|YP_339979.1| integrase [Pseudoalteromonas haloplanktis TAC125] gi|76875315|emb|CAI86536.1| putative integrase [Pseudoalteromonas haloplanktis TAC125] Length = 308 Score = 97.9 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 37/298 (12%), Positives = 76/298 (25%), Gaps = 59/298 (19%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA----IQFLTSM 140 A ++ ++ + IR + + + + ++ + A Q L ++ Sbjct: 4 KRYAKSTIEAYLFWIAAYIRFNNMQHPSSMGDTQVELYLNHLVNSQNVAQGTQAQALNAL 63 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200 L+K ++ + ERP + T+ ++ ++ LA L Sbjct: 64 SFLYKEIIKSPLSLSLDFVKSERP---RKLPIVLTQTEVSALFKHCI--TKHYLACALLY 118 Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV------------------------- 235 SG+R + R +Q + + ++ Sbjct: 119 GSGMRLMEVLRLRIQDIDFDYNCVRIWDGKGGKNRVVTLAGELIPQIRTQIQLVDNYLQL 178 Query: 236 ------ELPDGFMKLLAMTPIGKETFFINNDKQKMNA-----------------TQFSIW 272 LL Q Sbjct: 179 DLNNPLFCGVYMPHLLRKKYPNHNKQLGWQYLFPSYKLSIDPESKQLRRHHIDEKQLQRA 238 Query: 273 FKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 K A A +NK + H +R AT +GA + G + + YT + Sbjct: 239 VKKAAFNAHINKHVTPHTLRHSFATHLLQSGADIRTVQTQLGHSDIRTTQIYTHVLQQ 296 >gi|291544716|emb|CBL17825.1| Integrase [Ruminococcus sp. 18P13] Length = 377 Score = 97.9 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 51/364 (14%), Positives = 110/364 (30%), Gaps = 54/364 (14%) Query: 14 ERTRHGKIIYYFR------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67 + + G Y R G R++ S L S + +P Sbjct: 7 KGKKDGLQQYRVRVNYTDANGKYRQVERTAYGLSE-----ARKLEASMQAQYTSGAPHSG 61 Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR 126 T+ L EY + + + S E F I G+ K++ + ++ Sbjct: 62 GMTVSELYEEYVCAKK-HEVRATTLNSLEKNFRLYIAPLIGNVKLNKLSARELQCWKNKV 120 Query: 127 KHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCL---SVERPKRKTEGIRPWTKEDMQ 180 T S Q T++ + ++V+ Y+ N + + P +T + Q Sbjct: 121 DITGLAIGSKKQVYTTLNTILNYSVKIGYIEKNQLKVVGNFKDPYFQTPTDKLHFYTPEQ 180 Query: 181 QFKSFWSEGSQP-----------RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229 + + F Y+G+R + ++ ++ ++ Sbjct: 181 FVRYIHEARKVAEQSNSLTDWGYFVFFMIAYYTGMRRGEINALTWDDVEGDVIHVRHSVA 240 Query: 230 GTI---------------ITVELPDGFMKLLAMTPIGKETF-------FINNDKQKMNAT 267 + +++P+ M++L +E ++ + + T Sbjct: 241 QCVDGSDMVTSPKNRSSFRDLQVPEPLMEVLQEHKSRQEQVPGFLNSLYVCGGSRCLRNT 300 Query: 268 QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKG 325 + A+ AG+ H R A++ + G HE+ G V TY+ Sbjct: 301 SIRAQNQRFASGAGLPFIKVHDFRHSHASLLVNNGINIHEVARRLGHSNVSITLNTYSHL 360 Query: 326 ADRI 329 + Sbjct: 361 YPQE 364 >gi|327313820|ref|YP_004329257.1| site-specific recombinase, phage integrase family [Prevotella denticola F0289] gi|326944777|gb|AEA20662.1| site-specific recombinase, phage integrase family [Prevotella denticola F0289] Length = 428 Score = 97.9 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 33/258 (12%), Positives = 77/258 (29%), Gaps = 20/258 (7%) Query: 91 SRISFESY---FDQIIRKSG------DFDYRKITTKHIRSGVESRKHTPS----SAIQFL 137 ++ ++ + + D + ++T I K +AI+ L Sbjct: 129 TKANYRKFDICKRHFAKFLEEKYARTDLNIIELTPIVIHDFDVYLKTVVGQCFNTAIKTL 188 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RL 194 + + + + + +P L++ K K T E++ + R Sbjct: 189 KTFKTVIIFGRKAGVFNHDPFLNI-HFKTKRVDRGFLTDEEVDTIMHKEFATQRLVNVRD 247 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254 F F ++GL D ++ + + + E Sbjct: 248 IFLFSCFTGLAYVDVANLTPDNIITMDGKQWIVTARQKTDTLSHILLLDIPKIIIKKYEG 307 Query: 255 FFINNDKQKM-NATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATY 311 N + + + + + K A G+NK + H R AT+ G + Sbjct: 308 KAKNGRLIPILSNQRMNSYLKEIADVCGINKNLTFHMARHTFATMMLTKGVPVESVSKML 367 Query: 312 GWKTVDQAETYTKGADRI 329 G ++ + Y + ++ Sbjct: 368 GHTSITTTQLYARITNKK 385 >gi|319937080|ref|ZP_08011489.1| hypothetical protein HMPREF9488_02323 [Coprobacillus sp. 29_1] gi|319807858|gb|EFW04443.1| hypothetical protein HMPREF9488_02323 [Coprobacillus sp. 29_1] Length = 391 Score = 97.9 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 43/387 (11%), Positives = 101/387 (26%), Gaps = 51/387 (13%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63 + ++ + R Y G +R Y +++ + Sbjct: 7 KSKKYGYIYQVDMR-----YKDPYGVTQRHTKSGFRTKKEARNYEASI--IEKSNAKVLI 59 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISF-ESYFDQIIRKSGDFDYRKITTKHIRSG 122 P + TL + EY + A + + +++ + G+ ++ +++ Sbjct: 60 PESRKRTLNDVFDEYVEIEGKIKWAPATLYYYIKTHQTYVKGNFGNVPIESVSYVSLQAH 119 Query: 123 VESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG---------- 170 + + + V+FK VR Y++INP ++ P + + Sbjct: 120 INELSQRYNYPTVKNIKKVYSVIFKHGVRAGYISINPVPNILLPNKPEKKEGVEIISDDD 179 Query: 171 --IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228 + F + ++ L G + + + + Q Sbjct: 180 LKRLIEEIIKASPNRCFAKKAQYKYKSYGIALLIGRYTGLRISEVMALKKEDFDLERNQL 239 Query: 229 TGTIITVELPDGFMKLL--------------------------AMTPIGKETFFINNDKQ 262 T ++ + + Sbjct: 240 TIRRRIEHAGLKRKEIYLTERLKTKSSKARVEICSILSEYLKSWFVENPYDFVICDEHGD 299 Query: 263 KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ET 321 ++ F + A K + H +R AT AG + TV+ Sbjct: 300 FISPVNFQERIRDTAKKLDIKFHYHMLRHTYATELMVAGVNPIVVRDLLRHSTVNTTWNV 359 Query: 322 YTK--GADRIRLGIKNSRRISSVVDSD 346 YT D+ ++ +D+D Sbjct: 360 YTHPSRDDQRKVLDDLYDDNVEFMDND 386 >gi|269962907|ref|ZP_06177246.1| site-specific recombinase IntI [Vibrio harveyi 1DA3] gi|269832352|gb|EEZ86472.1| site-specific recombinase IntI [Vibrio harveyi 1DA3] Length = 320 Score = 97.9 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 31/301 (10%), Positives = 86/301 (28%), Gaps = 53/301 (17%) Query: 79 RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138 ++ A + ++ + + I K++ + + A++ Sbjct: 10 KEHMISRHYAKKTIETYLFWIKRYIVFHQLAHPSKLSEDDVERFLSHLAIDEKVAVKTQA 69 Query: 139 -SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197 ++ + + ++ + ++ + + T+++++ + + +L + Sbjct: 70 LALNAISFLYREYFQMPLSLNMRFQKSLTEKKLPVVLTRDEVR--RFVQHIDPKYKLHIQ 127 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-----------------------------K 228 L SGLR + R +Q + + +++ Sbjct: 128 LLYGSGLRIMECLRLRIQDIDYDYGALRVWQGKGGKNRTVTLAKELHEPLKAQVSLARDY 187 Query: 229 TGTIITVELP-------------------DGFMKLLAMTPIGKETFFINNDKQKMNATQF 269 + + L T + + + +N + Sbjct: 188 YQKDRHMGGYAGVYISDGLRRKYPGAELDFNWHFLFPSTKLSVDDDTGEFRRHHINESAI 247 Query: 270 SIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 K AG+ K + H +R AT ++GA + G V + YT + Sbjct: 248 QRAVKRATKDAGIEKSVTCHTLRHSFATHLLESGADIRTVQEQLGHTDVKTTQIYTHVIE 307 Query: 328 R 328 R Sbjct: 308 R 308 >gi|253774150|ref|YP_003036981.1| integrase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|297520846|ref|ZP_06939232.1| integrase family protein [Escherichia coli OP50] gi|242376639|emb|CAQ31349.1| ybl28 [Escherichia coli BL21(DE3)] gi|253325194|gb|ACT29796.1| integrase family protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] Length = 338 Score = 97.9 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 44/330 (13%), Positives = 86/330 (26%), Gaps = 30/330 (9%) Query: 14 ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + GK + Y GRR+R A+ T + ++ TL Sbjct: 4 RKLTTGKWLCECYPAGRSGRRVR-KQFATKGEALAFERHTMEETEAKPWLGESVD-RRTL 61 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----- 126 K +I + K H SL + ++ ++ G+ +T+K + R Sbjct: 62 KDVIELWFK-LHGKSLTAG-QHVYDKLL-LMVDALGNPLATDLTSKMFAHYRDKRLTGEI 118 Query: 127 --------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 +P + + + +F R + L R E W + Sbjct: 119 YFSEKWKKGASPVTINLEQSYLSSVFSELSRLGEWSYPNPLENMRKFTIAEKEMAWLTHE 178 Query: 179 MQQFKSFWSEGSQPRLAFE--FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 + P LA L +G R ++ + + K ++ Sbjct: 179 QIVELLADCKRQDPILALVVKICLSTGARWREAINLTRSQVTKYRITFVRTKGKKNRSIP 238 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296 + + + F + + + H +R A Sbjct: 239 ISKELYEEIMALDGFNFFTDCYFQ--------FLSVMEKTSIVLPRGQLTHVLRHTFAAH 290 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326 +G L G + Y A Sbjct: 291 FMMSGGNILALQKILGHHDIKMTMRYAHLA 320 >gi|84516978|ref|ZP_01004335.1| possible phage-related integrase [Loktanella vestfoldensis SKA53] gi|84509096|gb|EAQ05556.1| possible phage-related integrase [Loktanella vestfoldensis SKA53] Length = 386 Score = 97.9 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 47/334 (14%), Positives = 107/334 (32%), Gaps = 17/334 (5%) Query: 28 GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87 G +RI L + A +A + +E + P T + + E+ Sbjct: 54 GRRKRITLGGYPAISLSKAREAARLALSEIQEGTFGRKNAPATFETAVEEWYAREQRAKK 113 Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP--SSAIQFLTSMRVLFK 145 + ++ G +I + ++ + A + + F Sbjct: 114 SFRQVEQAMRL--HVLPFLGRHQLDQIKKADLMRVIDRVAERGKLTQANRVRAFITRFFN 171 Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKED-MQQFKSFWSEGSQPRLAFEFLLYSGL 204 +A+ ++ + +P ++ RP + R ++++ +++ G + L+ + Sbjct: 172 FAIERDLLMSSPAAALPRPAVEISRDRVLSRDELCAVWETAEQMGFPFGRITQLLILTAQ 231 Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTG----TIITVELPDGFMKLLAMTPIGKETFFINND 260 R + L + K V L + LL+ P I Sbjct: 232 RRDEVAGMRWSELDLDRARWIISKERAKNGKAHIVHLSPQALALLSTIPRQNGVDLIFTT 291 Query: 261 KQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISA-DAGATAHELMATYGWKTVD- 317 + + FS A ++ V + H +R+ +AT A + T + + Sbjct: 292 TGRSAVSGFSKAKAALDARSHVSDWRFHDLRRSAATFMAEELRITPVVVDRILNHVSGTV 351 Query: 318 --QAETYTKG---ADRIRLGIKNSRRISSVVDSD 346 Y +G ADR + + ++V+S+ Sbjct: 352 RGVTAVYLRGEHLADREAALAAWGQLVENLVNSN 385 >gi|284008137|emb|CBA74367.1| phage integrase [Arsenophonus nasoniae] Length = 338 Score = 97.9 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 62/348 (17%), Positives = 116/348 (33%), Gaps = 41/348 (11%) Query: 1 MTPSLR------LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGS 54 M+ + +PP V + G+ Y F+ +GR IRL A + + Sbjct: 1 MSGKRKNPADNWMPPRVFR-----GRSAYEFKHPNGRTIRLC---------ALNADKSVV 46 Query: 55 TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI 114 E + K + LI+++ SA + L+ +++ ++ Y ++I G + I Sbjct: 47 WSHYEQYVNDEKHIFNYESLINQFLCSADFIELSKDTQNDYQKYSKKVIPVFGKMNPDNI 106 Query: 115 TTKHIRSGVESRKHTPSS-AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 +HIR ++ R + A + + M +F+W + V NPC V+ + E R Sbjct: 107 KPEHIRKYMDKRGLKSRTQANREKSFMSRVFRWGYERGLVKNNPCKGVK---QYKEIARD 163 Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233 D + + ++A E R D L IK KTG Sbjct: 164 RYVTDTEYHALYSISPLIVQIAMELAYLCCARQGDILALRKDQLMEAGIYIKQGKTGKSQ 223 Query: 234 TVELPDGFMKLLAMTPI-------GKETFFINNDKQKMNATQFSIWFKAKATKA------ 280 + K + + + + F+ + +A Sbjct: 224 IKGWSERLTKTIKLAKQLPLKEGVNSLYVLHQANGKLYTRDGFNSRWLKAKEEAAKKYPE 283 Query: 281 -GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 N + H ++ + T E A G K + Q Y + + Sbjct: 284 LDFNFTFHDLKAKGISDL---DGTLQEKQAISGHKNIGQTARYDRKIE 328 >gi|282907695|ref|ZP_06315537.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus WW2703/97] gi|283959808|ref|ZP_06377249.1| prophage L54a, integrase [Staphylococcus aureus subsp. aureus A017934/97] gi|282328600|gb|EFB58871.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus WW2703/97] gi|283789400|gb|EFC28227.1| prophage L54a, integrase [Staphylococcus aureus subsp. aureus A017934/97] Length = 404 Score = 97.9 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 44/402 (10%), Positives = 110/402 (27%), Gaps = 73/402 (18%) Query: 12 TKERTRHGKIIYYF--RKGH---GRRIRLPYPHES----TFIPAYMSALTGSTPKREYIN 62 +E T++ Y + R G+ + + A + + ++ + Sbjct: 3 VREITKNNSTAYRYLERYTDPLTGKYKTVSVTRNKNNVRSQKDAQLELNKIIEQRLKHYS 62 Query: 63 SPRKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDF-DYRKITTKHIR 120 + + + T E+ + + +S + + KIT +++ Sbjct: 63 TKQLENLTFHDACDEWLEHYKTHSGSKPTTIKEKKSNTNTVKNAIDSKVLISKITHTYLQ 122 Query: 121 SGVESRKHTPSS--AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE- 177 + + + S + +R +FK+A + + L +K + + + Sbjct: 123 NIINEWAKSHSIGHVQSLVIVIRSVFKYAFKYYDLHDISVLDKIDIPKKVQTRNEFQAKR 182 Query: 178 --------------DMQQFKSFWSEGSQPR------LAFEFLLYSGLRCSDSCRAGVQHL 217 ++ R EF + +G+R + ++ Sbjct: 183 NNYLEDSEVKELLECFDYLIKHKRHATRKRNYEMVKALVEFQINNGMRIGELLAIKTDNV 242 Query: 218 QNNIF---------------------SIKTQKTGTIITVELPDG