RPSBLAST alignment for GI: 254780134 and conserved domain: cd01185

>gnl|CDD|29506 cd01185, INT_Tn4399, Tn4399 and related integrases, DNA breaking-rejoining enzymes, integrase/recombinases, N- and C-terminal domains. This CD includes various bacterial integrases, including cLV25, a Bacteroides fragilis chromosomal transfer factor integrase similar to the Bacteroides mobilizable transposon, Tn4399, integrase.. Length = 299

 Score = 46.0 bits (109), Expect = 1e-05
 Identities = 53/246 (21%), Positives = 96/246 (39%), Gaps = 22/246 (8%)

Query: 99  FDQIIRKSGDFDYRKITTKHIRS----GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA 154
           F +   K  D    ++T + I        + +K + ++A+ +L+ ++ L K A R + + 
Sbjct: 51  FIECTYKEIDIALLELTREFILEFKLFLRKEKKLSRNTAVHYLSWLKKLLKIAYRDKGLR 110

Query: 155 INPCLSVERPKRKTEGIRPW-TKEDMQQFKS---FWSEGSQPRLAFEFLLYSGLRCSDSC 210
            NP    +  K + E  R + T +++Q+              R AF F  ++GLR SD  
Sbjct: 111 DNPFAKFKCKK-EEETDREYLTPDELQKLAETPCKDPRLELVRRAFLFSCFTGLRYSDIK 169

Query: 211 RAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE-TFFINNDKQKM 264
           +   + +  +         + QKT   + + L D  +++L   P  KE   F       M
Sbjct: 170 KLTWEEIVEDSDGEKWIRKRRQKTKVEVYIPLLDEALQILGKYPDEKEGLVFPLLKNSNM 229

Query: 265 NATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           N        K  A  AG+ K  + H  R   AT+   +G     +    G   +   + Y
Sbjct: 230 NKP-----LKEWAKLAGIKKHITFHCARHTFATLQLLSGGPIETVSKMLGHTNIKTTQVY 284

Query: 323 TKGADR 328
            +  D 
Sbjct: 285 ARVTDE 290