RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780134|ref|YP_003064547.1| phage-related
integrase/recombinase [Candidatus Liberibacter asiaticus str. psy62]
(348 letters)
>gnl|CDD|144254 pfam00589, Phage_integrase, Phage integrase family. Members of
this family cleave DNA substrates by a series of
staggered cuts, during which the protein becomes
covalently linked to the DNA through a catalytic
tyrosine residue at the carboxy end of the alignment.
The catalytic site residues in CRE recombinase are
Arg-173, His-289, Arg-292 and Tyr-324.
Length = 170
Score = 63.5 bits (155), Expect = 8e-11
Identities = 33/142 (23%), Positives = 53/142 (37%), Gaps = 10/142 (7%)
Query: 193 RLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELPDGFMKLL----- 245
R E LL +GLR S+ L N I KT TV L D ++ L
Sbjct: 24 RALVELLLLTGLRISELLSLRWSDIDLDNGTIRIPQTKTRKSRTVPLSDAALEALKEWLG 83
Query: 246 -AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
E F++ + ++ + + F+ +AG+ K + H +R AT A+ G
Sbjct: 84 DRKEAEESEFLFVSRRGKPLSRSTVNRAFRRAGKRAGIEKDLTPHDLRHTFATHLAENGV 143
Query: 303 TAHELMATYGWKTVDQAETYTK 324
+ G ++ YT
Sbjct: 144 PLRVIQKLLGHSSISMTMRYTH 165
>gnl|CDD|29502 cd00801, INT_P4, Bacteriophage P4 integrase. P4-like integrases are
found in temperate bacteriophages, integrative plasmids,
pathogenicity and symbiosis islands, and other mobile
genetic elements. They share the same fold in their
catalytic domain and the overall reaction mechanism with
the superfamily of DNA breaking-rejoining enzymes. The
P4 integrase mediates integrative and excisive
site-specific recombination between two sites, called
attachment sites, located on the phage genome and the
bacterial chromosome. The phage attachment site is often
found adjacent to the integrase gene, while the host
attachment sites are typically situated near tRNA
genes..
Length = 357
Score = 59.9 bits (145), Expect = 1e-09
Identities = 39/267 (14%), Positives = 93/267 (34%), Gaps = 22/267 (8%)
Query: 57 KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT 116
++E + T + E+ + ++R + ++ G +IT
Sbjct: 59 RKEEKAAKLSAANTFAEVAEEWLAAKKPRWSEKHARQWRRTLEKHVLPVLGKKPITEITA 118
Query: 117 KHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-P 173
+ + + + +A + ++ +F++A+ + + NP + +
Sbjct: 119 RDLLDVLRRIEARGALETARRVRQRLKQVFRYAIARGLIEANPAADLRGADGAPKKQHDR 178
Query: 174 WTKEDMQQFKSFW------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSI- 224
D + F S RLA + LL +G+R + A L+N +++I
Sbjct: 179 ALSPD--ELPEFLQALDAASGSPVTRLALKLLLLTGVRPGELRGARWSEIDLENALWTIP 236
Query: 225 -KTQKTGTIITVELPDGFMKLL-AMTPIGKETFFI----NNDKQKMNATQFSIWFKAKAT 278
+ KT V L D + LL + + + ++ + + ++ + K
Sbjct: 237 AERMKTRRPHRVPLSDQALALLEELRELSGHSEYVFPSRRDRGKPLSENTLNKALKRMGY 296
Query: 279 KAGVNKSAHGVRKFSATISADAGATAH 305
+ HG+R+ + T + G
Sbjct: 297 LGEW--TPHGLRRTARTWLNELGFPPD 321
>gnl|CDD|29503 cd01182, INT_REC_C, DNA breaking-rejoining enzymes,
intergrase/recombinases, C-terminal catalytic domain.
The tyrosine recombinase/integrase family share the same
catalytic domain containing six conserved active site
residues. The best-studied members of this diverse
family include the bacteriophage lambda integrase, the
bacteriophage P1 Cre recombinase, the yeast Flp
recombinase and the bacterial XerD/C recombinases. Their
overall reaction mechanism is essentially identical and
involves cleavage of a single strand of a DNA duplex by
nucleophilic attack of a conserved tyrosine to give a 3'
phosphotyrosyl protein-DNA adduct. In the second
rejoining step, a terminal 5' hydroxyl attacks the
covalent adduct to release the enzyme and generate
duplex DNA. Many intergrase/recombinases also have
N-terminal domains, which show little sequence or
structure similarity..
Length = 162
Score = 57.6 bits (138), Expect = 5e-09
Identities = 32/145 (22%), Positives = 50/145 (34%), Gaps = 13/145 (8%)
Query: 193 RLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELPDGFMKLL----- 245
R LLY+GLR S+ L +++ KTG TV L +LL
Sbjct: 18 RALILLLLYTGLRVSELLALRWSDIDLDKGTITVRRTKTGKERTVPLSPELAELLREYLE 77
Query: 246 --AMTPIGKETFFINNDKQKMNATQ--FSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
P + F + T+ K +AG+ + + H +R AT +
Sbjct: 78 LRRPAPKPDDYLFPSRRGGPKRLTRRAVRRLLKKAGKRAGIPERLTPHDLRHTFATRLLE 137
Query: 300 AGATAHELMATYGWKTVDQAETYTK 324
AG + G ++ E Y
Sbjct: 138 AGVPLEVIQELLGHSSISTTERYLH 162
>gnl|CDD|29495 cd00397, DNA_BRE_C, DNA breaking-rejoining enzymes, C-terminal
catalytic domain. The DNA breaking-rejoining enzyme
superfamily includes type IB topoisomerases and tyrosine
recombinases that share the same fold in their catalytic
domain containing six conserved active site residues.
The best-studied members of this diverse superfamily
include human topoisomerase I, the bacteriophage lambda
integrase, the bacteriophage P1 Cre recombinase, the
yeast Flp recombinase and the bacterial XerD/C
recombinases. Their overall reaction mechanism is
essentially identical and involves cleavage of a single
strand of a DNA duplex by nucleophilic attack of a
conserved tyrosine to give a 3' phosphotyrosyl
protein-DNA adduct. In the second rejoining step, a
terminal 5' hydroxyl attacks the covalent adduct to
release the enzyme and generate duplex DNA. The enzymes
differ in that topoisomerases cleave and then rejoin the
same 5' and 3' termini, whereas a site-specific
recombinase transfers a 5' hydroxyl generated by
recombinase cleavage to a new 3' phosphate partner
located in a different duplex region. Many DNA
breaking-rejoining enzymes also have N-terminal domains,
which show little sequence or structure similarity..
Length = 164
Score = 51.6 bits (123), Expect = 4e-07
Identities = 34/153 (22%), Positives = 55/153 (35%), Gaps = 15/153 (9%)
Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKL 244
S + LA LL +GLR S+ C + + I KT TV L + +KL
Sbjct: 12 STPERLYLALLLLLATGLRISELCALRWSDIDLDKRVIHITGTKTKKERTVPLSEEALKL 71
Query: 245 LAM-------TPIGKETFFINNDKQ---KMNATQFSIWFKAKATKAGVNK---SAHGVRK 291
L +E F + ++ FKA +AG++K + H +R
Sbjct: 72 LKEYLKKRRPANGDEEYLFPSRRGGPAATLSRRNVKRIFKAAGRRAGIDKEGLTPHSLRH 131
Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324
A+ +AG + G ++ Y
Sbjct: 132 TFASALLNAGLDLEAVQDLLGHSSIAMTMRYAH 164
>gnl|CDD|34580 COG4974, XerD, Site-specific recombinase XerD [DNA replication,
recombination, and repair].
Length = 300
Score = 50.6 bits (121), Expect = 6e-07
Identities = 50/263 (19%), Positives = 97/263 (36%), Gaps = 28/263 (10%)
Query: 87 LAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSM 140
L+ N+ S+ F + + + G D T IR + + +S + L+++
Sbjct: 22 LSANTLSSYRRDLEDFREWLEERGITDLADATEADIREYLTELAEQGLSATSIARALSAL 81
Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-----RLA 195
R +++ +R+ +P ++ PK + ++E+++ + P R
Sbjct: 82 RSFYQFLIREGLREDDPTRLLDSPKLPKRLPKFLSEEEVEALLEA-PDEDTPLGLRDRAM 140
Query: 196 FEFLLYSGLRCSDSCRAGVQ--HLQNNIFSI--KTQKTGTI---------ITVELPDGFM 242
E L +GLR S+ + L+ + + K K + + L +
Sbjct: 141 LELLYATGLRVSELVGLTLSDVDLRQGVVRVRGKGNKERLVPFGEEAVEALEKYLEEARP 200
Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
KLL + F N + F K A +AG++K S H +R AT +
Sbjct: 201 KLLKGKS-STDALFPNQRGGGLTRQGFWKRLKDYAERAGIDKKISPHTLRHSFATHLLEN 259
Query: 301 GATAHELMATYGWKTVDQAETYT 323
GA + G + + YT
Sbjct: 260 GADLRVVQELLGHADISTTQIYT 282
>gnl|CDD|29499 cd00798, INT_XerDC, XerD and XerC integrases, DNA
breaking-rejoining enzymes, N- and C-terminal domains.
XerD-like integrases are involved in the site-specific
integration and excision of lysogenic bacteriophage
genomes, transposition of conjugative transposons,
termination of chromosomal replication, and stable
plasmid inheritance. They share the same fold in their
catalytic domain containing six conserved active site
residues and the overall reaction mechanism with the DNA
breaking-rejoining enzyme superfamily. In Escherichia
coli, the Xer site-specific recombination system acts to
convert dimeric chromosomes, which are formed by
homologous recombination to monomers. Two related
recombinases, XerC and XerD, bind cooperatively to a
recombination site present in the E. coli chromosome.
Each recombinase catalyzes the exchange of one pair of
DNA strand in a reaction that proceeds through a
Holliday junction intermediate. These enzymes can bridge
two different and well-separated DNA sequences called
arm- and core-sites. The C-terminal domain binds,
cleaves and re-ligates DNA strands at the core-sites,
while the N-terminal domain is largely responsible for
high-affinity binding to the arm-type sites..
Length = 284
Score = 47.9 bits (114), Expect = 4e-06
Identities = 53/275 (19%), Positives = 103/275 (37%), Gaps = 28/275 (10%)
Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES---RK 127
L +L E S + + + F + + + G +T IR + +
Sbjct: 5 LDYLAVERGLSEN----TLAAYRRDLERFLEFLEERGILFPADVTPDDIRRFLAELKDQG 60
Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
+ S + L+++R FK+ +R+ + NP +E PK K + T E++++ +
Sbjct: 61 LSARSIARKLSALRSFFKFLLREGLILANPAELIEPPKLKRSLPKVLTIEEVERLLAAPD 120
Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG------------- 230
G + R E L +GLR S+ + + + I+ + G
Sbjct: 121 GDTPLGLRDRALLELLYSTGLRVSELVGLKLSDVDLSRGLIRVRGKGNKERIVPLGETAV 180
Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
+ L LL + + F+N ++++ K A +AG+ K S H
Sbjct: 181 EALQRYLEVRRPLLLKVGDS--DALFLNQRGKRLSRRGVWKILKEYARRAGIEKKISPHT 238
Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
+R AT + GA + G ++ + YT
Sbjct: 239 LRHSFATHLLENGADLRAVQELLGHASLATTQIYT 273
>gnl|CDD|29506 cd01185, INT_Tn4399, Tn4399 and related integrases, DNA
breaking-rejoining enzymes, integrase/recombinases, N-
and C-terminal domains. This CD includes various
bacterial integrases, including cLV25, a Bacteroides
fragilis chromosomal transfer factor integrase similar
to the Bacteroides mobilizable transposon, Tn4399,
integrase..
Length = 299
Score = 46.0 bits (109), Expect = 1e-05
Identities = 53/246 (21%), Positives = 96/246 (39%), Gaps = 22/246 (8%)
Query: 99 FDQIIRKSGDFDYRKITTKHIRS----GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA 154
F + K D ++T + I + +K + ++A+ +L+ ++ L K A R + +
Sbjct: 51 FIECTYKEIDIALLELTREFILEFKLFLRKEKKLSRNTAVHYLSWLKKLLKIAYRDKGLR 110
Query: 155 INPCLSVERPKRKTEGIRPW-TKEDMQQFKS---FWSEGSQPRLAFEFLLYSGLRCSDSC 210
NP + K + E R + T +++Q+ R AF F ++GLR SD
Sbjct: 111 DNPFAKFKCKK-EEETDREYLTPDELQKLAETPCKDPRLELVRRAFLFSCFTGLRYSDIK 169
Query: 211 RAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE-TFFINNDKQKM 264
+ + + + + QKT + + L D +++L P KE F M
Sbjct: 170 KLTWEEIVEDSDGEKWIRKRRQKTKVEVYIPLLDEALQILGKYPDEKEGLVFPLLKNSNM 229
Query: 265 NATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
N K A AG+ K + H R AT+ +G + G + + Y
Sbjct: 230 NKP-----LKEWAKLAGIKKHITFHCARHTFATLQLLSGGPIETVSKMLGHTNIKTTQVY 284
Query: 323 TKGADR 328
+ D
Sbjct: 285 ARVTDE 290
>gnl|CDD|29500 cd00799, INT_Cre, Cre recombinase, C-terminal catalytic domain.
Cre-like recombinases belong to the superfamily of DNA
breaking-rejoining enzymes, which share the same fold in
their catalytic domain and the overall reaction
mechanism. The bacteriophage P1 Cre recombinase
maintains the circular phage replicon in a monomeric
state by catalyzing a site-specific recombination
between two loxP sites. The catalytic core domain of
Cre recombinase is linked to a more divergent helical
N-terminal domain, which interacts primarily with the
DNA major groove proximal to the crossover region..
Length = 287
Score = 41.5 bits (97), Expect = 3e-04
Identities = 49/235 (20%), Positives = 79/235 (33%), Gaps = 34/235 (14%)
Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-----IRPWTKEDMQQF 182
PS+ + L+++ L + + V R R+ E ED+ +
Sbjct: 44 LAPSTISRRLSALSQLHRRSGLPSPADSPLVRLVLRGIRREEARPKRQALAILPEDLDKL 103
Query: 183 KSFWSEGSQPR---------LAFEFLL----YSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
+S E R L F LL LR D L + KT ++
Sbjct: 104 RSLLDESDTLRDLRDLALLLLGFAGLLRRSELVRLRWEDLTFTDGGGLLVTLRRSKTDQS 163
Query: 230 GTIITVELPDGFM-------KLLAMTPIGKETFFINNDKQK------MNATQFSIWFKAK 276
G + +P + L I K F D+ ++ + K
Sbjct: 164 GLGVLKLIPPLTTCPVRALERWLEAARIPKGPLFRRIDRWGVLGPGALSDNSLNRILKRL 223
Query: 277 ATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
A AG+ S H +R+ AT +A AG + E+M W++ Y + ADR
Sbjct: 224 AEAAGLRSGSWSGHSLRRGFATEAARAGYSLLEIMRQGRWRSPKMVSRYIRDADR 278
>gnl|CDD|34579 COG4973, XerC, Site-specific recombinase XerC [DNA replication,
recombination, and repair].
Length = 299
Score = 35.7 bits (82), Expect = 0.017
Identities = 34/155 (21%), Positives = 69/155 (44%), Gaps = 14/155 (9%)
Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV--ESRKH 128
L++L E + S H +LA N R E+ ++ + G ++++ +R+ V R+
Sbjct: 14 LRYLRVERQLSPH--TLA-NYRRQLEALI-ALLAQMGLGSWQQLDPADVRAFVARSHRRG 69
Query: 129 TPSSAIQF-LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
+ ++ L+++R + W V+Q + NP V PK+ + ++ +
Sbjct: 70 LSARSLARRLSALRSFYDWLVKQGELKANPAKGVSAPKQPRHLPKNLDVDEANRLLDI-- 127
Query: 188 EGSQP-----RLAFEFLLYSGLRCSDSCRAGVQHL 217
+G P R E + SGLR S+ ++H+
Sbjct: 128 DGDDPLAVRDRALLELMYGSGLRLSELVGLDLKHV 162
>gnl|CDD|29507 cd01186, INT_SG3_C, INT_SG3, DNA breaking-rejoining enzymes,
integrase/recombinases subgroup 3, catalytic domain. The
CD contains various predicted bacterial and phage
integrase/recombinase sequences for which not much
experimental characterization is available..
Length = 180
Score = 34.8 bits (80), Expect = 0.032
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Query: 169 EGIRPWTKEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKT 226
E IR KE ++ K + S+ L F + +GLR SD V+ ++ SIK
Sbjct: 4 EPIR--DKEQIKAIKDYLKNHSERNYLLFLIGINTGLRISDILALKVKDVRGDERISIKE 61
Query: 227 QKTGTIITVELPDGFMKLL 245
+KTG + L + L
Sbjct: 62 KKTGKRKRIYLNPILKEEL 80
>gnl|CDD|29510 cd01189, INT_phiLC3_C, phiLC3 phage and phage-related integrases,
site-specific recombinases, DNA breaking-rejoining
enzymes, C-terminal catalytic domain. This CD includes
various bacterial (mainly gram positive) and phage
integrases, including those similar to Lactococcus phage
phiLC3, TPW22, Tuc2009, BK5-T, A2, bIL285, bIL286,
bIL311, ul36 and phi g1e; Staphylococcus aureus phage
phi13 and phi42; Oenococcus oeni phage fOg44;
Streptococcus thermophilus phage O1205 and Sfi21; and
Streptococcus pyogenes phage T12 and T270..
Length = 191
Score = 32.1 bits (73), Expect = 0.20
Identities = 35/182 (19%), Positives = 66/182 (36%), Gaps = 32/182 (17%)
Query: 174 WTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIK---T 226
TKE++++ + + L L Y+GLR ++ +NN +I
Sbjct: 3 LTKEELKKLLEYLKKHENSFSKLLILLLAYTGLRIGEALALTWSDIDFENNTITINKTWD 62
Query: 227 QKTGTII-----------TVELPDGFMKLL----------AMTPIGKETFFI--NNDKQK 263
KTG I T+ L + +L + I + + N +
Sbjct: 63 YKTGGYIFKPPKTKSSIRTIPLDKKTIAILKEYKKEQKKYLLGEINNDDELVFTNKGGKI 122
Query: 264 MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQ-AET 321
+ + K KAG+ K + HG+R A++ +AG + + G + +T
Sbjct: 123 STPSTINKRLKRICKKAGIPKITFHGLRHTHASLLLEAGVSIKYVSERLGHADISTTLDT 182
Query: 322 YT 323
Y+
Sbjct: 183 YS 184
>gnl|CDD|38746 KOG3538, KOG3538, KOG3538, Disintegrin metalloproteinases with
thrombospondin repeats [Posttranslational modification,
protein turnover, chaperones].
Length = 845
Score = 29.4 bits (65), Expect = 1.4
Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 5/63 (7%)
Query: 159 LSVERPKRKTEGIRPWTKEDMQ-----QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213
L P +T ++ + D +++ + ++PR + + CS SC G
Sbjct: 724 LEASGPLPETLTVQVLVQGDTVPNPGVRYEFTVPKDTEPRRQYTWAHGPWSECSASCGGG 783
Query: 214 VQH 216
VQ
Sbjct: 784 VQS 786
>gnl|CDD|34695 COG5092, NMT1, N-myristoyl transferase [Lipid metabolism].
Length = 451
Score = 28.5 bits (63), Expect = 2.7
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
K KTEG+R ++DM+ + E S+
Sbjct: 253 PAKTKTEGLRLAEEKDMEDVARLYLEYSR 281
>gnl|CDD|32836 COG3019, COG3019, Predicted metal-binding protein [General function
prediction only].
Length = 149
Score = 26.8 bits (59), Expect = 8.3
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
S G A E ++Y C C QH++ N F +K +T + +
Sbjct: 14 GLGSTGPAQAQATEMVVYKSPNCG-CCDEWAQHMKANGFEVKVVETDDFLAL 64
>gnl|CDD|30103 cd01381, MYSc_type_VII, Myosin motor domain, type VII myosins.
Myosins in this group have been associated with
functions in sensory systems such as vision and hearing.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle..
Length = 671
Score = 26.8 bits (59), Expect = 9.6
Identities = 14/55 (25%), Positives = 29/55 (52%)
Query: 91 SRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFK 145
+R +F Q+++ S + ++I + G E+RK P+ + QF S+ +L +
Sbjct: 500 NRDTFSGDLSQLVQSSKNKFLKQIFQADVEMGAETRKKKPTLSSQFRRSLDLLMR 554
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.320 0.132 0.399
Gapped
Lambda K H
0.267 0.0712 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 4,179,524
Number of extensions: 210832
Number of successful extensions: 457
Number of sequences better than 10.0: 1
Number of HSP's gapped: 451
Number of HSP's successfully gapped: 20
Length of query: 348
Length of database: 6,263,737
Length adjustment: 95
Effective length of query: 253
Effective length of database: 4,210,882
Effective search space: 1065353146
Effective search space used: 1065353146
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.2 bits)