RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780134|ref|YP_003064547.1| phage-related
integrase/recombinase [Candidatus Liberibacter asiaticus str. psy62]
(348 letters)
>2kob_A Uncharacterized protein; alpha beta, structural genomics,
PSI-2, protein structure initiative; NMR {Clostridium
leptum dsm 753} (A:)
Length = 108
Score = 61.9 bits (150), Expect = 1e-10
Identities = 16/99 (16%), Positives = 36/99 (36%)
Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
+ ++ KS ++V+ S+++Y + +I I+S + K
Sbjct: 2 DSFGDWAEKFLKSKEADGVSVSQLNSYKNYCRNHLSPLYMKSLSEILPADIQSIINETKL 61
Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
++ + +F+ A+ + NP V PK
Sbjct: 62 AKNTLKAIRNTASQIFRLAIENRAIDFNPADYVRIPKIA 100
>2kiw_A INT protein; alpha, structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium; NMR {Staphylococcus haemolyticus JCSC1435}
(A:)
Length = 111
Score = 60.8 bits (147), Expect = 2e-10
Identities = 18/110 (16%), Positives = 40/110 (36%), Gaps = 3/110 (2%)
Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK-- 127
T K + ++ K + + V+S + E I + + I + V+
Sbjct: 1 TFKQVADDWLKQ-YANDVKVSSVRAREKAIQHAIERFNTKPIQTIKKHDYQRFVDDISAQ 59
Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
++ + + S ++FK+A + P ++RPK+K
Sbjct: 60 YSKNYVDSIVASTNMIFKYAYDTRLIKAMPSEGIKRPKKKVSVELEHHHH 109
>2oxo_A Integrase; DNA-binding protein, four-helix bundle, DNA
binding protein; 2.00A {Unidentified phage} (A:)
Length = 103
Score = 60.3 bits (146), Expect = 4e-10
Identities = 20/100 (20%), Positives = 38/100 (38%), Gaps = 2/100 (2%)
Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
TL + Y K + + I++ S I R D ITTK I + +
Sbjct: 2 TLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDE 61
Query: 130 --PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
+SA +++ F+ A+ + ++ N + K +
Sbjct: 62 GKAASAKLIRSTLSDAFREAIAEGHITTNHVAATRAAKSE 101
>2kd1_A DNA integration/recombination/invertion protein; protein
structure initiative, structural genomics, unknown
function, PSI-2; HET: DNA; NMR {Bacillus cereus atcc
14579} (A:)
Length = 118
Score = 60.0 bits (145), Expect = 4e-10
Identities = 14/116 (12%), Positives = 39/116 (33%), Gaps = 5/116 (4%)
Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIR---S 121
+ + + + S+ + + + Y + I G+ K+T+ H++ +
Sbjct: 3 PSKLSYGEYLESWFNT-KRHSVGIQTAKVLKGYLNSRIIPSLGNIKLAKLTSLHMQNYVN 61
Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
+ + + + +R + A+ E + N + PK E +
Sbjct: 62 SLRDEGLKRGTIEKIIKVIRNSLEHAIDLELITKNVAAKTKLPKADKEELEHHHHH 117
>2khq_A Integrase; all-alpha, structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium; NMR {Staphylococcus saprophyticus subsp}
(A:)
Length = 110
Score = 59.2 bits (143), Expect = 7e-10
Identities = 14/100 (14%), Positives = 34/100 (34%), Gaps = 2/100 (2%)
Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK-- 127
T ++ + ++ +++ +ES + I + I + +
Sbjct: 3 TFADYFYQWYEVNKLPHVSESTKRHYESAYKHIKDHFRHKLLKDIKRTEYQKFLNEYGLT 62
Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
H+ + + + +R F A+ + YV NP E
Sbjct: 63 HSYETIRKLNSYIRNAFDDAIHEGYVIKNPTYKAELHASV 102
>2key_A Putative phage integrase; protein structure, PSI, NESG,
structural genomics, unknown function, protein structure
initiative; NMR {Bacteroides fragilis nctc 9343} (A:)
Length = 112
Score = 58.0 bits (140), Expect = 2e-09
Identities = 12/109 (11%), Positives = 42/109 (38%), Gaps = 5/109 (4%)
Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
+ + ++ Y K+ + L + + +S + + ++T +R
Sbjct: 2 NNPSDFKSFHDFVASYMKT-YSRRLEIGTFRHHKSCMRKFKEYCEGLQFHELTEDFLRDY 60
Query: 123 V----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
+ ++ + S+A + L+++++ A+++ Y+ +P
Sbjct: 61 LIYMKKTLCNADSTAQRNLSTIKIYVSAAIKKGYMENDPFKDFGLEHHH 109
>2kkv_A Integrase; protein structure, PSI, nesgc, structural
genomics, protein structure initiative, northeast
structural genomics consortium; NMR {Salmonella enterica
subsp} (A:)
Length = 121
Score = 56.1 bits (135), Expect = 6e-09
Identities = 17/119 (14%), Positives = 39/119 (32%), Gaps = 7/119 (5%)
Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVE 124
T + + E+ + + + R Y + I G D R++ T H+ + ++
Sbjct: 4 SGAYTFETIAREWHE--SNKRWSEDHRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIK 61
Query: 125 --SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE--RPKRKTEGIRPWTKEDM 179
A + + + ++AV+ +Y+ NP + K
Sbjct: 62 EVDTSGKHDVAQRLQQRVTAIMRYAVQNDYIDSNPASDMAGALSTTKARHYPLEHHHHH 120
>1z19_A Integrase; protein-DNA complex, DNA binding protein/DNA
complex; HET: PTR; 2.80A {Enterobacteria phage lambda}
PDB: 1p7d_A* (A:1-93)
Length = 93
Score = 56.0 bits (135), Expect = 6e-09
Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 2/91 (2%)
Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RK 127
TL + Y K + + I++ S I R D ITTK I + + +
Sbjct: 2 TLHSWLDRYEKILASRGIKQKTLINYXSKIKAIRRGLPDAPLEDITTKEIAAXLNGYIDE 61
Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
+SA +++ F+ A+ + ++ N
Sbjct: 62 GKAASAKLIRSTLSDAFREAIAEGHITTNHV 92
>2kj8_A Putative prophage CPS-53 integrase; INTS, INTC, YFDB, DNA
integration, DNA recombination, structural genomics,
protein structure initiative; NMR {Escherichia coli
k-12} (A:)
Length = 118
Score = 55.4 bits (133), Expect = 1e-08
Identities = 12/116 (10%), Positives = 31/116 (26%), Gaps = 6/116 (5%)
Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVE- 124
+ + E+ + +V FD I G + + I + +
Sbjct: 3 NNNSFSAIYKEWYEH-KKQVWSVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRR 61
Query: 125 -SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKE 177
+ A + +F++A+ NP + + + +
Sbjct: 62 FEDRGAMERANKARRRCGEVFRYAIVTGRAKYNPAPDLADAMKGYRKKNLEHHHHH 117
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA
complex; HET: PTR; 3.80A {Enterobacteria phage lambda}
(A:75-166)
Length = 92
Score = 54.5 bits (131), Expect = 2e-08
Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 2/91 (2%)
Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RK 127
TL + Y K + + I++ S I R D ITTK I + + +
Sbjct: 1 TLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDE 60
Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
+SA +++ F+ A+ + ++ N
Sbjct: 61 GKAASAKLIRSTLSDAFREAIAEGHITTNHV 91
>2khv_A Phage integrase; solution structure, GFT, NESG, structural
genomics, unknown function, PSI-2, protein structure
initiative; NMR {Nitrosospira multiformis atcc 25196}
(A:)
Length = 106
Score = 54.2 bits (130), Expect = 2e-08
Identities = 12/100 (12%), Positives = 27/100 (27%), Gaps = 2/100 (2%)
Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVES-RK 127
T + Y K+ + + G + + TK I ++ +
Sbjct: 2 TFSECAALYIKAHRSSWKNTKHADQWTNTIKTYCGPVIGPLSVQDVDTKLIMKVLDPIWE 61
Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
P +A + + + WA + Y +
Sbjct: 62 QKPETASRLRGRIESVLDWATVRGYREGDNPARWRGYLEH 101
>2kj5_A Phage integrase; GFT NMR, PSI-2, NESG, structural genomics,
protein structure initiative; NMR {Nitrosospira
multiformis atcc 25196} (A:)
Length = 116
Score = 53.0 bits (127), Expect = 5e-08
Identities = 18/105 (17%), Positives = 41/105 (39%), Gaps = 5/105 (4%)
Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVE 124
K T+ L EY + + S ++ I+ + G + +HI ++
Sbjct: 4 KNAYTVAQLADEYFE--RMIAGRWKHPNIVRSRIEKDIKPAIGSLKVEDVKPRHIDDVLK 61
Query: 125 --SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
++ PS A L ++ +F +A+++ + NP + +
Sbjct: 62 AVMKRGAPSIANDTLRWLKRMFNYAIKRHIIEYNPAAAFDPGDAG 106
>2kkp_A Phage integrase; SAM-like domain, alpha-helical bundle,
structural genomics, PSI-2, protein structure
initiative; NMR {Moorella thermoacetica atcc 39073}
(A:27-117)
Length = 91
Score = 51.8 bits (124), Expect = 1e-07
Identities = 11/89 (12%), Positives = 27/89 (30%), Gaps = 4/89 (4%)
Query: 90 NSRISFESYFDQIIRKS-GDFDYRKITTKHIRS---GVESRKHTPSSAIQFLTSMRVLFK 145
++ S+E+ + + G +K+ I+ +P+ +
Sbjct: 2 STWESYETVLRLHVIPTLGSIPLKKLQPADIQRLYASKLESGLSPTRVRYIHVVLHEAMS 61
Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPW 174
A + NP + + P+ E
Sbjct: 62 QARESGLLLQNPTEAAKPPRHPLEHHHHH 90
>2kj9_A Integrase; DNA_BRE_C superfamily, INTB, PSI-2, structural
genomics, protein structure initiative; NMR
{Pectobacterium atrosepticum} (A:)
Length = 118
Score = 51.5 bits (123), Expect = 2e-07
Identities = 14/106 (13%), Positives = 40/106 (37%), Gaps = 5/106 (4%)
Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGV 123
R K + + + + + + S + + + G+ D ++ T + +
Sbjct: 7 RNNTRAFKTVAKSWFA--TKTTWSEDYQRSVWTRLETYLFPDIGNKDIAELDTGDLLVPI 64
Query: 124 E--SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
+ + A++ + ++AV+Q+ + NP +E +K
Sbjct: 65 KKIEKLGYLEIAMRVKQYATAIMRYAVQQKMIRFNPAYDLEGAVQK 110
>1a0p_A Site-specific recombinase XERD; DNA binding, DNA
recombination; 2.50A {Escherichia coli} (A:101-290)
Length = 190
Score = 47.0 bits (110), Expect = 4e-06
Identities = 28/179 (15%), Positives = 56/179 (31%), Gaps = 18/179 (10%)
Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQP----RLAFEFLLYSGLRCSDSCRAGVQHLQN 219
PK + ++ +++ + E L +GLR S+ + +
Sbjct: 1 PKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISL 60
Query: 220 NIFSIKTQKTG-----------TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ 268
++ G + +E + + + + F + Q+M
Sbjct: 61 RQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQT 120
Query: 269 FSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
F K A AG++ S H +R AT + GA + G + + YT
Sbjct: 121 FWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTH 179
>1ae9_A Lambda integrase; DNA recombination, site-specific
recombination; 1.90A {Bacteriophage lambda} (A:)
Length = 179
Score = 46.7 bits (109), Expect = 5e-06
Identities = 19/167 (11%), Positives = 44/167 (26%), Gaps = 14/167 (8%)
Query: 172 RPWTKEDMQQF-KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
T ++ + ++ S RLA E + +G R D C + + ++ KTG
Sbjct: 2 SRLTADEYLKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTG 61
Query: 231 T----------IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
+ G+ + + T + +A+
Sbjct: 62 VKIAIPTALHIDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASG 121
Query: 281 GVNKS---AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
+ + + + + G K+ A +
Sbjct: 122 LSFEGDPPTFHELRSLSARLYEKQISDKFAQHLLGHKSDTMASQFRD 168
>1z19_A Integrase; protein-DNA complex, DNA binding protein/DNA
complex; HET: PTR; 2.80A {Enterobacteria phage lambda}
PDB: 1p7d_A* (A:94-283)
Length = 190
Score = 45.1 bits (105), Expect = 1e-05
Identities = 24/183 (13%), Positives = 51/183 (27%), Gaps = 17/183 (9%)
Query: 161 VERPKRKTEGIRPWTKEDMQQF-KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH--L 217
R + T ++ + ++ S RLA E + +G R D C
Sbjct: 1 ATRAAKSKVRRSRLTADEYLKIYQAAESSPCWLRLAXELAVVTGQRVGDLCEXKWSDIVD 60
Query: 218 QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI-------GKETFFINNDKQKMNATQFS 270
I L + + + G ET + ++ +++ S
Sbjct: 61 GYLYVEQSKTGVKIAIPTALHIDALGISXKETLDKCKEILGGETIIASTRREPLSSGTVS 120
Query: 271 IWFKAKATKAGVNK-----SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324
+F +G++ + H +R + + + G K+ A
Sbjct: 121 RYFXRARKASGLSFEGDPPTFHELRSL-SARLYEKQISDKFAQHLLGHKSDTXASQXRDD 179
Query: 325 GAD 327
Sbjct: 180 RGR 182
>1a0p_A Site-specific recombinase XERD; DNA binding, DNA
recombination; 2.50A {Escherichia coli} (A:1-100)
Length = 100
Score = 42.2 bits (99), Expect = 1e-04
Identities = 12/97 (12%), Positives = 36/97 (37%), Gaps = 12/97 (12%)
Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESRKH 128
L L E + N+ ++ ++ + +++ + R
Sbjct: 10 LDALWLEKNLAE-------NTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLE 62
Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
+S+ + L+++R LF++ R+++ +P +
Sbjct: 63 GGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLA 99
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA
complex; HET: PTR; 3.80A {Enterobacteria phage lambda}
(A:167-356)
Length = 190
Score = 40.8 bits (94), Expect = 3e-04
Identities = 25/177 (14%), Positives = 56/177 (31%), Gaps = 16/177 (9%)
Query: 163 RPKRKTEGIRPWTKEDMQQF-KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
R + T ++ + ++ S RLA E + +G R D C + +
Sbjct: 3 RAAKSKVRRSRLTADEYLKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGY 62
Query: 222 FSIKTQKT---------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272
++ KT I + + +G ET + ++ +++ S +
Sbjct: 63 LYVEQSKTGVKIAIPTALHIDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRY 122
Query: 273 FKAKATKAGVNK-----SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
F +G++ + H +R + + + G K+ A
Sbjct: 123 FMRARKASGLSFEGDPPTFHELRSL-SARLYEKQISDKFAQHLLGHKSDTMASQXRD 178
>2a3v_A Site-specific recombinase INTI4; protein-DNA complex,
recombination; HET: DNA; 2.80A {Vibrio cholerae o1
biovar eltor str} (A:1-94)
Length = 94
Score = 39.1 bits (91), Expect = 9e-04
Identities = 8/88 (9%), Positives = 23/88 (26%), Gaps = 4/88 (4%)
Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---- 129
+ R+ A + ++ + + I + K + +
Sbjct: 5 FLLSVREFMQTRYYAKKTIEAYLHWITRYIHFHNKKHPSLMGDKEVEEFLTYLAVQGKVA 64
Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINP 157
+ L S+ L+K ++
Sbjct: 65 TKTQSLALNSLSFLYKEILKTPLSLEIR 92
>1xo0_A Recombinase CRE; CRE recombinase, holliday junction,
recombination,complex (recombinase/DNA), hydrolase,
ligase/DNA complex; 2.00A {Enterobacteria phage P1}
(A:1-114)
Length = 114
Score = 38.8 bits (90), Expect = 0.001
Identities = 11/112 (9%), Positives = 30/112 (26%), Gaps = 13/112 (11%)
Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRS---GVES 125
+ S ++ S K + + + +R +++
Sbjct: 9 MDMFRDRQAFSE-------HTWKMLLSVCRSWAAWCKLNNRKWFPAEPEDVRDYLLYLQA 61
Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
R + Q L + +L + + N V + + E + +
Sbjct: 62 RGLAVKTIQQHLGQLNMLHRRSGLPRPSDSNAVSLV-MRRIRKENVDAGERA 112
>2a3v_A Site-specific recombinase INTI4; protein-DNA complex,
recombination; HET: DNA; 2.80A {Vibrio cholerae o1
biovar eltor str} (A:95-144,A:243-320)
Length = 128
Score = 34.4 bits (79), Expect = 0.022
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 263 KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
++N T + A +AG+ K + H +R AT + GA + G V +
Sbjct: 49 RVNETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQ 108
Query: 321 TYTK 324
YT
Sbjct: 109 IYTH 112
>1xo0_A Recombinase CRE; CRE recombinase, holliday junction,
recombination,complex (recombinase/DNA), hydrolase,
ligase/DNA complex; 2.00A {Enterobacteria phage P1}
(A:115-310)
Length = 196
Score = 32.3 bits (71), Expect = 0.11
Identities = 23/195 (11%), Positives = 45/195 (23%), Gaps = 39/195 (20%)
Query: 172 RPWTKEDMQQFKSFWSEGSQP-----RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
+ + D Q +S + + L+ ++ R V+ +
Sbjct: 2 LAFERTDFDQVRSLMENSDRCQDIRNLAFLGIAYNTLLKIAEIARIRVKDISRTDGGRML 61
Query: 227 QKTGTII----------------------------------TVELPDGFMKLLAMTPIGK 252
G +A
Sbjct: 62 IHIGRTKTLVSTAGVEKALSLGVTKLVERWISVSGVADDPNNYLFCRVRKNGVAAPSATS 121
Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYG 312
+ + + K + + + S H R +A A AG + E+M G
Sbjct: 122 QLSTRALEGIFEATHRLIYGAKDDSGQRYLAWSGHSARVGAARDMARAGVSIPEIMQAGG 181
Query: 313 WKTVDQAETYTKGAD 327
W V+ Y + D
Sbjct: 182 WTNVNIVMNYIRNLD 196
>1aih_A HP1 integrase; DNA integration, recombination; 2.50A
{Bacteriophage HP1} (A:1-49,A:87-170)
Length = 133
Score = 29.5 bits (66), Expect = 0.74
Identities = 10/62 (16%), Positives = 17/62 (27%), Gaps = 4/62 (6%)
Query: 267 TQFSIWFKAKATKAGVNK----SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
F+ +A + H +R A+ G L G T++ Y
Sbjct: 52 NDAYESFENAVLRAEIELPKGQLTHVLRHTFASHFMMNGGNILVLKEILGHSTIEMTMRY 111
Query: 323 TK 324
Sbjct: 112 AH 113
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase,
translation termination, ATP-binding, cytoplasm,
hydrolase, membrane; 2.80A {Schizosaccharomyces pombe}
(A:1-326)
Length = 326
Score = 29.0 bits (64), Expect = 1.1
Identities = 22/159 (13%), Positives = 43/159 (27%), Gaps = 29/159 (18%)
Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214
+ + PK + + P ++E +Q E Y+ ++
Sbjct: 179 MLSRVDASVPKPQAICLAP-SRELARQIMDV---------VTEMGKYTEVKT-------- 220
Query: 215 QHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE--TFFINNDKQKMNATQFSIW 272
K K I + P M L+ + F+ ++ M Q
Sbjct: 221 -AFGIKDSVPKGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQG--- 276
Query: 273 FKAKATKAGVNKSAHGVRK---FSATISADAGATAHELM 308
++ + + + FSAT S A
Sbjct: 277 LGDQSMR--IKHLLPRNTQIVLFSATFSERVEKYAERFA 313
>1zzh_A Cytochrome C peroxidase; heme groups, oxidoreductase; HET:
HEC; 2.70A {Rhodobacter capsulatus} (A:82-115,A:183-328)
Length = 180
Score = 25.8 bits (56), Expect = 8.0
Identities = 9/49 (18%), Positives = 16/49 (32%), Gaps = 1/49 (2%)
Query: 24 YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
L + I A++ LTG P+ + P + T +
Sbjct: 128 SVMANSQLGATLD-DTQVDQITAFLGTLTGEQPEVVHPILPVRSAQTPR 175
>1on0_A YYCN protein; structural genomics, alpha-beta protein with
anti-parallel beta strands, PSI, protein structure
initiative; 2.20A {Bacillus subtilis} (A:)
Length = 158
Score = 25.9 bits (56), Expect = 8.8
Identities = 19/162 (11%), Positives = 45/162 (27%), Gaps = 22/162 (13%)
Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
+ P E+ + + ++ ++ S + L +
Sbjct: 5 LTPXQTEEFRSYLTYTTKHYAEEKVKAGTWLPEDAQLLSKQVFTDLLPRGL----ETPHH 60
Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS----- 285
+ +++L + +G + + A + G K
Sbjct: 61 HLWSLKLNEK-------DIVGWLWIHAEPEHPQQEAFIYDFGLYEPYRGKGYAKQALAAL 113
Query: 286 -----AHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
+ G+RK S + A TA +L G++ D +
Sbjct: 114 DQAARSXGIRKLSLHVFAH-NQTARKLYEQTGFQETDVVXSK 154
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.320 0.132 0.399
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,606,558
Number of extensions: 113961
Number of successful extensions: 375
Number of sequences better than 10.0: 1
Number of HSP's gapped: 363
Number of HSP's successfully gapped: 31
Length of query: 348
Length of database: 4,956,049
Length adjustment: 89
Effective length of query: 259
Effective length of database: 1,947,404
Effective search space: 504377636
Effective search space used: 504377636
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.5 bits)