BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780134|ref|YP_003064547.1| phage-related integrase/recombinase [Candidatus Liberibacter asiaticus str. psy62] (348 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780134|ref|YP_003064547.1| phage-related integrase/recombinase [Candidatus Liberibacter asiaticus str. psy62] Length = 348 Score = 724 bits (1870), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/348 (100%), Positives = 348/348 (100%) Query: 1 MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60 MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY Sbjct: 1 MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60 Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR Sbjct: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ Sbjct: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG Sbjct: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADA 300 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADA Sbjct: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADA 300 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP Sbjct: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 >537021.9.peg.911_1 Length = 47 Score = 29.3 bits (64), Expect = 0.11, Method: Composition-based stats. Identities = 13/23 (56%), Positives = 16/23 (69%) Query: 314 KTVDQAETYTKGADRIRLGIKNS 336 + V Q E Y KGA+RIRL +K S Sbjct: 2 EIVSQVERYAKGANRIRLKVKYS 24 >gi|254780431|ref|YP_003064844.1| hypothetical protein CLIBASIA_01580 [Candidatus Liberibacter asiaticus str. psy62] Length = 178 Score = 26.2 bits (56), Expect = 0.79, Method: Compositional matrix adjust. Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%) Query: 174 WTKEDMQQFKSFWSEG-SQPRLAFEF 198 WT E + + K FWSEG S ++A + Sbjct: 3 WTVERIDKLKKFWSEGLSASQIAVQL 28 >537021.9.peg.912_1 Length = 47 Score = 25.4 bits (54), Expect = 1.3, Method: Compositional matrix adjust. Identities = 8/27 (29%), Positives = 18/27 (66%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIR 104 YR+ +HW L +R + + +F++I++ Sbjct: 21 YREKSHWTGLVSATRRNLDLHFNKIVQ 47 >gi|254780799|ref|YP_003065212.1| DNA translocase FtsK [Candidatus Liberibacter asiaticus str. psy62] Length = 806 Score = 25.0 bits (53), Expect = 1.7, Method: Compositional matrix adjust. Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 4/29 (13%) Query: 61 INSPRKKPTTLKWLISE----YRKSAHWG 85 + +P+K T LKWL+ E Y+K + G Sbjct: 513 VTNPQKAVTVLKWLVCEMEERYQKMSKIG 541 >gi|254780594|ref|YP_003065007.1| Glutathione S-transferase domain protein [Candidatus Liberibacter asiaticus str. psy62] Length = 230 Score = 25.0 bits (53), Expect = 2.1, Method: Compositional matrix adjust. Identities = 10/26 (38%), Positives = 15/26 (57%) Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINP 157 S +F T M F W R+E++ +NP Sbjct: 21 SEYEFTTDMIEEFPWGKRREFLELNP 46 >gi|254780832|ref|YP_003065245.1| putative potassium uptake transport system protein [Candidatus Liberibacter asiaticus str. psy62] Length = 628 Score = 23.9 bits (50), Expect = 4.0, Method: Compositional matrix adjust. Identities = 11/41 (26%), Positives = 19/41 (46%) Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162 G+ S I F + V +KW + + + + P LS+E Sbjct: 375 GISVSGTMVISTIMFSVFVHVCWKWKISKVIIFLFPLLSIE 415 >gi|254780413|ref|YP_003064826.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus Liberibacter asiaticus str. psy62] Length = 820 Score = 23.9 bits (50), Expect = 4.8, Method: Compositional matrix adjust. Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 11/38 (28%) Query: 75 ISEYRKSAHWGSLAVNSRISFE-----------SYFDQ 101 +++Y K ++G+L NS+ SFE +YFD+ Sbjct: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317 >gi|254780664|ref|YP_003065077.1| bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase [Candidatus Liberibacter asiaticus str. psy62] Length = 536 Score = 23.1 bits (48), Expect = 7.5, Method: Compositional matrix adjust. Identities = 10/25 (40%), Positives = 14/25 (56%) Query: 8 PPFVTKERTRHGKIIYYFRKGHGRR 32 P F+ + +GKI Y FRK R+ Sbjct: 164 PLFLAEMDVNNGKIPYNFRKKMARQ 188 >gi|254780742|ref|YP_003065155.1| hypothetical protein CLIBASIA_03145 [Candidatus Liberibacter asiaticus str. psy62] Length = 419 Score = 23.1 bits (48), Expect = 7.9, Method: Compositional matrix adjust. Identities = 12/30 (40%), Positives = 14/30 (46%) Query: 306 ELMATYGWKTVDQAETYTKGADRIRLGIKN 335 E+ TY TV Q + Y G D I KN Sbjct: 220 EISRTYDLPTVGQHKVYLSGHDEIHSLFKN 249 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.320 0.132 0.399 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 212,488 Number of Sequences: 1233 Number of extensions: 8045 Number of successful extensions: 23 Number of sequences better than 100.0: 10 Number of HSP's better than 100.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 14 Number of HSP's gapped (non-prelim): 10 length of query: 348 length of database: 328,796 effective HSP length: 75 effective length of query: 273 effective length of database: 236,321 effective search space: 64515633 effective search space used: 64515633 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 39 (19.6 bits)