Query gi|254780135|ref|YP_003064548.1| hypothetical protein CLIBASIA_00070 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 408 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Sun May 22 05:59:31 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780135.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2b2x_A Integrin alpha-1; compu 74.1 4.2 0.00018 19.2 4.7 79 302-394 124-212 (223) 2 1pt6_A Integrin alpha-1; X-RAY 72.0 3.8 0.00016 19.5 4.0 49 345-393 138-196 (213) 3 1mf7_A Integrin alpha M; cell 65.3 6.4 0.00027 18.0 5.5 79 303-394 107-190 (194) 4 3gxb_A VON willebrand factor; 42.9 14 0.0006 15.5 5.0 50 343-394 126-175 (184) 5 1v7p_C Integrin alpha-2; snake 37.6 17 0.00072 14.9 4.3 50 345-394 137-196 (200) 6 1q0p_A Complement factor B; VO 35.3 19 0.00078 14.7 6.6 80 303-385 128-211 (223) 7 1shu_X Anthrax toxin receptor 33.8 20 0.00082 14.5 4.1 44 346-391 135-179 (182) 8 1n3y_A Integrin alpha-X; alpha 28.2 24 0.001 13.9 5.1 80 301-393 109-193 (198) 9 1v9v_A KIAA0561 protein; helix 23.7 29 0.0012 13.3 2.0 39 49-88 10-49 (114) 10 3kp1_E D-ornithine aminomutase 22.2 8.3 0.00035 17.1 -1.4 37 35-78 66-102 (121) No 1 >2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune system; 2.20A {Rattus norvegicus} SCOP: c.62.1.1 Probab=74.12 E-value=4.2 Score=19.23 Aligned_cols=79 Identities=20% Similarity=0.466 Sum_probs=49.5 Q ss_pred CCEEEEEEEECCCCCHHHCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCHH--------HHHHHHCCCCHH- Q ss_conf 53068867634410011115788999999889887631357741899984148874302--------678762059032- Q gi|254780135|r 302 HSKYMLMFAIGNQLSRSSVGKETIDRILQDCYYMHKHHRTGRGAITIFSVGFSPDQDTR--------YTLRQCASDPSK- 372 (408) Q Consensus 302 hskymlmfaignqlsrssvgketidrilqdcyymhkhhrtgrgaitifsvgfspdqdtr--------ytlrqcasdpsk- 372 (408) ..|.++++.-|. +... ..+....+.. . ...|+||.||..++-+.. -.|++-||+|+. T Consensus 124 ~~kvlillTDG~--~~d~---~~~~~~a~~l------k---~~gi~v~~Igvg~~~~~~~~~~~~~~~eL~~IAs~p~~~ 189 (223) T 2b2x_A 124 VKKVMVIVTDGE--SHDN---YRLKQVIQDC------E---DENIQRFSIAILGHYNRGNLSTEKFVEEIKSIASEPTEK 189 (223) T ss_dssp SEEEEEEEESSC--CTTG---GGHHHHHHHH------H---TTTEEEEEEEECGGGC---CCCHHHHHHHHTTSCSSGGG T ss_pred CCEEEEEEECCC--CCCC---HHHHHHHHHH------H---HCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCC T ss_conf 725799982698--7883---1299999999------8---759989999984666644324423699999986699855 Q ss_pred -EEEECCCCCHHHHHHHHHHHHH Q ss_conf -0442587653447898777778 Q gi|254780135|r 373 -YYEINSDENVMPIAKSLARNVI 394 (408) Q Consensus 373 -yyeinsdenvmpiakslarnvi 394 (408) .|.+.+-+....+.+.|+..+. T Consensus 190 ~~f~~~d~~~L~~i~~~l~~~ic 212 (223) T 2b2x_A 190 HFFNVSDELALVTIVKALGERIF 212 (223) T ss_dssp TEEEESSTTGGGGGHHHHHTTTC T ss_pred CEEECCCHHHHHHHHHHHHHHHC T ss_conf 18981899999999999998864 No 2 >1pt6_A Integrin alpha-1; X-RAY diffraction, cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A Probab=71.97 E-value=3.8 Score=19.51 Aligned_cols=49 Identities=18% Similarity=0.446 Sum_probs=38.0 Q ss_pred EEEEEEEECCCCCCH--------HHHHHHHCCCCHH--EEEECCCCCHHHHHHHHHHHH Q ss_conf 189998414887430--------2678762059032--044258765344789877777 Q gi|254780135|r 345 AITIFSVGFSPDQDT--------RYTLRQCASDPSK--YYEINSDENVMPIAKSLARNV 393 (408) Q Consensus 345 aitifsvgfspdqdt--------rytlrqcasdpsk--yyeinsdenvmpiakslarnv 393 (408) .|++|.||..++-+. .-.|+..||+|+. +|.+.+.+....|.+.|...+ T Consensus 138 gi~v~~Vgvg~~~~~~~~~~~~~~~eL~~iAs~p~~~~~f~~~~~~~L~~i~~~l~~~i 196 (213) T 1pt6_A 138 NIQRFSIAILGSYNRGNLSTEKFVEEIKSIASEPTEKHFFNVSDELALVTIVKTLGERI 196 (213) T ss_dssp TEEEEEEEECHHHHHTTCCCHHHHHHHHHHSCSSHHHHEEEESSGGGGGGGHHHHHHHH T ss_pred CCEEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHH T ss_conf 99999999747655454333246999999866998540898089999999999999997 No 3 >1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 1n9z_A 1bhq_1 1bho_1 1idn_1 Probab=65.33 E-value=6.4 Score=17.96 Aligned_cols=79 Identities=16% Similarity=0.294 Sum_probs=47.3 Q ss_pred CEEEEEEEECCCCCHHHCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCH---HHHHHHHCCCCHH--EEEEC Q ss_conf 306886763441001111578899999988988763135774189998414887430---2678762059032--04425 Q gi|254780135|r 303 SKYMLMFAIGNQLSRSSVGKETIDRILQDCYYMHKHHRTGRGAITIFSVGFSPDQDT---RYTLRQCASDPSK--YYEIN 377 (408) Q Consensus 303 skymlmfaignqlsrssvgketidrilqdcyymhkhhrtgrgaitifsvgfspdqdt---rytlrqcasdpsk--yyein 377 (408) .|+++++.=|..-....--.+.+ +.++. -.|++|.||+..+-.. .-.|+.+|++|+. .|.+. T Consensus 107 ~kvvvl~tDG~~~~~~~~~~~~~-~~l~~------------~gv~v~~Vgi~~~~~~~~~~~~L~~iAs~~~~~~~~~v~ 173 (194) T 1mf7_A 107 FKILVVITDGEKFGDPLGYEDVI-PEADR------------EGVIRYVIGVGDAFRSEKSRQELNTIASKPPRDHVFQVN 173 (194) T ss_dssp EEEEEEEESSCCBSCSSCGGGTH-HHHHH------------TTEEEEEEEESGGGCSHHHHHHHHHHSCSSHHHHEEEES T ss_pred CEEEEEEECCCCCCCHHHHHHHH-HHHHH------------CCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCEEEEEC T ss_conf 64999994788789804499999-99997------------799999999788766634699999986699866089949 Q ss_pred CCCCHHHHHHHHHHHHH Q ss_conf 87653447898777778 Q gi|254780135|r 378 SDENVMPIAKSLARNVI 394 (408) Q Consensus 378 sdenvmpiakslarnvi 394 (408) +-+..-++.+.+++... T Consensus 174 ~~~~L~~~~~~l~~~i~ 190 (194) T 1mf7_A 174 NFEALKTIQNQLREKIF 190 (194) T ss_dssp SGGGGGGGHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHC T ss_conf 99999999999987641 No 4 >3gxb_A VON willebrand factor; VWA-like fold, blood coagulation, cell adhesion, cleavage on PAIR of basic residues, disease mutation, disulfide bond; HET: NAG; 1.90A {Homo sapiens} Probab=42.93 E-value=14 Score=15.48 Aligned_cols=50 Identities=20% Similarity=0.284 Sum_probs=33.9 Q ss_pred CCEEEEEEEECCCCCCHHHHHHHHCCCCHHEEEECCCCCHHHHHHHHHHHHH Q ss_conf 7418999841488743026787620590320442587653447898777778 Q gi|254780135|r 343 RGAITIFSVGFSPDQDTRYTLRQCASDPSKYYEINSDENVMPIAKSLARNVI 394 (408) Q Consensus 343 rgaitifsvgfspdqdtrytlrqcasdpskyyeinsdenvmpiakslarnvi 394 (408) +..|+||.||..++-|.. .|+..|+ |++++.+++-+..-.+...+...+. T Consensus 126 ~~gi~i~~vgvG~~~~~~-~L~~ia~-~~~~~~~~~~~~L~~~~~~l~~~~c 175 (184) T 3gxb_A 126 PGDIQVVPIGVGPNANVQ-ELERIGW-PNAPILIQDFETLPREAPDLVLQRC 175 (184) T ss_dssp CTTEEEEEEEESTTSCHH-HHHHHHT-TSCCEEESCTTTHHHHHHHHHHHHH T ss_pred HCCCEEEEEECCCCCCHH-HHHHHCC-CCCEEEECCHHHHHHHHHHHHHHHC T ss_conf 489989999846747999-9998739-9977994899999999999997546 No 5 >1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhesion, glycoprotein, toxin/cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A Probab=37.62 E-value=17 Score=14.92 Aligned_cols=50 Identities=14% Similarity=0.323 Sum_probs=35.0 Q ss_pred EEEEEEEECCCCCCH--------HHHHHHHCCCCHH--EEEECCCCCHHHHHHHHHHHHH Q ss_conf 189998414887430--------2678762059032--0442587653447898777778 Q gi|254780135|r 345 AITIFSVGFSPDQDT--------RYTLRQCASDPSK--YYEINSDENVMPIAKSLARNVI 394 (408) Q Consensus 345 aitifsvgfspdqdt--------rytlrqcasdpsk--yyeinsdenvmpiakslarnvi 394 (408) .|++|.||..+..+. .-.|+..||+|+. .|.+.+-+....+.+.|++.+. T Consensus 137 gi~i~~Igvg~~~~~~~~~~~~~~~eL~~iAs~p~~~~~f~~~d~~~L~~~~~~l~~~ic 196 (200) T 1v7p_C 137 NILRFGIAVLGYLNRNALDTKNLIKEIKAIASIPTERYFFNVSDEAALLEKAGTLGEQIF 196 (200) T ss_dssp TEEEEEEEECHHHHHTTCCCHHHHHHHHHHSCSSHHHHEEEESSSGGGHHHHHHHHHHHH T ss_pred CEEEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHH T ss_conf 909999997774455654431259999998669986139993899999999999997720 No 6 >1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1 Probab=35.26 E-value=19 Score=14.67 Aligned_cols=80 Identities=15% Similarity=0.297 Sum_probs=43.6 Q ss_pred CEEEEEEEECCCCCHHHCCHHHHHHHHHHHHHHHH-HCCCCCCEEEEEEEECCCCCCHHHHHHHHCCCCHH---EEEECC Q ss_conf 30688676344100111157889999998898876-31357741899984148874302678762059032---044258 Q gi|254780135|r 303 SKYMLMFAIGNQLSRSSVGKETIDRILQDCYYMHK-HHRTGRGAITIFSVGFSPDQDTRYTLRQCASDPSK---YYEINS 378 (408) Q Consensus 303 skymlmfaignqlsrssvgketidrilqdcyymhk-hhrtgrgaitifsvgfspdqdtrytlrqcasdpsk---yyeins 378 (408) .|+...+.-|..-.- .-..+.+++ ++++..... -.......+.+|++|+.++.+. -.|+..|+.|.. +|.+++ T Consensus 128 ~~~ivllTDG~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~i~~igvg~~~~~-~~L~~iAs~~~~~~~~~~~~d 204 (223) T 1q0p_A 128 RHVIILMTDGLHNMG-GDPITVIDE-IRDLLYIGKDRKNPREDYLDVYVFGVGPLVNQ-VNINALASKKDNEQHVFKVKD 204 (223) T ss_dssp EEEEEEEECSCCCSS-SCTHHHHHH-HHHHTTCSCBTTBCCGGGEEEEEEECSSCCCH-HHHHHHSCCCTTCCCEEETTC T ss_pred CEEEEEECCCCCCCC-CCHHHHHHH-HHHHHHHHHHHHHHHHCCCEEEEEECCCCCCH-HHHHHHHCCCCCCEEEEECCC T ss_conf 428999768876778-982899999-98633467999998767965999736875699-999999749899747999089 Q ss_pred CCCHHHH Q ss_conf 7653447 Q gi|254780135|r 379 DENVMPI 385 (408) Q Consensus 379 denvmpi 385 (408) -+....+ T Consensus 205 ~~~L~~~ 211 (223) T 1q0p_A 205 MENLEDV 211 (223) T ss_dssp ------- T ss_pred HHHHHHH T ss_conf 9999999 No 7 >1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y* Probab=33.75 E-value=20 Score=14.51 Aligned_cols=44 Identities=14% Similarity=0.292 Sum_probs=30.1 Q ss_pred EEEEEEECCCCCCHHHHHHHHCCCCHHEEEECCC-CCHHHHHHHHHH Q ss_conf 8999841488743026787620590320442587-653447898777 Q gi|254780135|r 346 ITIFSVGFSPDQDTRYTLRQCASDPSKYYEINSD-ENVMPIAKSLAR 391 (408) Q Consensus 346 itifsvgfspdqdtrytlrqcasdpskyyeinsd-envmpiakslar 391 (408) |.+|.||+.+. | .-.|++.|++|...|...++ +..-.+.+.+++ T Consensus 135 v~v~~Vgig~~-~-~~~L~~ia~~~~~~~~~~~~~~~L~~~~~~i~~ 179 (182) T 1shu_X 135 ASVYCVGVLDF-E-QAQLERIADSKEQVFPVKGGFQALKGIINSILA 179 (182) T ss_dssp CEEEEEECSSC-C-HHHHHHHSSSGGGEEESSSTTHHHHHHHHHHHH T ss_pred CEEEEEEECCC-C-HHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHH T ss_conf 99999984754-8-999999858999669934999999999999986 No 8 >1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1 Probab=28.20 E-value=24 Score=13.88 Aligned_cols=80 Identities=14% Similarity=0.263 Sum_probs=44.7 Q ss_pred CCCEEEEEEEECCCCCHHHCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCH---HHHHHHHCCCCHH--EEE Q ss_conf 65306886763441001111578899999988988763135774189998414887430---2678762059032--044 Q gi|254780135|r 301 SHSKYMLMFAIGNQLSRSSVGKETIDRILQDCYYMHKHHRTGRGAITIFSVGFSPDQDT---RYTLRQCASDPSK--YYE 375 (408) Q Consensus 301 shskymlmfaignqlsrssvgketidrilqdcyymhkhhrtgrgaitifsvgfspdqdt---rytlrqcasdpsk--yye 375 (408) ...|.++++.-|..-.. ........+.+- .-.+.+|.||..++.+. .-.|+..|+.|+. ++. T Consensus 109 ~~~kvivlltDG~~~~~----~~~~~~~~~~~~---------~~gv~i~~Ig~g~~~~~~~~~~~L~~ias~~~~~~~~~ 175 (198) T 1n3y_A 109 DAAKILIVITDGKKEGD----SLDYKDVIPMAD---------AAGIIRYAIGVGLAFQNRNSWKELNDIASKPSQEHIFK 175 (198) T ss_dssp TSEEEEEEEESSCCBSC----SSCHHHHHHHHH---------HTTCEEEEEEESGGGGSSTTHHHHHHHSCSSSGGGEEE T ss_pred CCCCEEEEEECCCCCCC----CCCHHHHHHHHH---------HCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCEEEE T ss_conf 76425999935898887----205999999999---------78988999997876677534999999866998651999 Q ss_pred ECCCCCHHHHHHHHHHHH Q ss_conf 258765344789877777 Q gi|254780135|r 376 INSDENVMPIAKSLARNV 393 (408) Q Consensus 376 insdenvmpiakslarnv 393 (408) +++-+..-.+.+.+.+.+ T Consensus 176 ~~~~~~L~~i~~~l~~~i 193 (198) T 1n3y_A 176 VEDFDALKDIQNQLKEKI 193 (198) T ss_dssp ESSGGGGGGGHHHHHHHH T ss_pred ECCHHHHHHHHHHHHHHH T ss_conf 299999999999999873 No 9 >1v9v_A KIAA0561 protein; helix bundle, MAST205, microtubule-associated serine/threonine protein kinase, structural genomics; NMR {Homo sapiens} SCOP: a.29.10.1 Probab=23.67 E-value=29 Score=13.32 Aligned_cols=39 Identities=33% Similarity=0.390 Sum_probs=26.4 Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHH-HHH Q ss_conf 8888999987764106843236677412235789999-987 Q gi|254780135|r 49 KTALLQEVLDHVIYRTSPKNLYDLREAGRDNFIRHQI-EKA 88 (408) Q Consensus 49 ktallqevldhviyrtspknlydlreagrdnfirhqi-eka 88 (408) .||-..|-|...|-.-+|.+...+. .|--+|+.||| |-| T Consensus 10 AtaQMEerL~~fi~~~~~~~~~~la-Dgvl~FvhHQiiElA 49 (114) T 1v9v_A 10 ATAQMEGRLQEFLTAYAPGARLALA-DGVLGFIHHQIVELA 49 (114) T ss_dssp TTHHHHHHHHHHHHHSCBTTTBCCS-CHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCCCCCCCCHH-HHHHHHHHHHHHHHH T ss_conf 1899999999999976962344113-889999999999999 No 10 >3kp1_E D-ornithine aminomutase S component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_E* 3koy_E* 3koz_E* 3kp0_E* 3kox_E* Probab=22.17 E-value=8.3 Score=17.15 Aligned_cols=37 Identities=35% Similarity=0.554 Sum_probs=24.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCHH Q ss_conf 99999876777777888899998776410684323667741223 Q gi|254780135|r 35 AIVDVVVDQVTVMQKTALLQEVLDHVIYRTSPKNLYDLREAGRD 78 (408) Q Consensus 35 aivdvvvdqvtvmqktallqevldhviyrtspknlydlreagrd 78 (408) +||+-|++. ..|.| --.|+.||-+.+.--++||||+. T Consensus 66 ~iVe~v~~~-gLlgK------GAGhvV~k~ak~~~i~i~eAG~~ 102 (121) T 3kp1_E 66 AIVDKTMDR-GLMGK------GAGHIVYKIAKEKNISVREAGLA 102 (121) T ss_dssp HHHHHHHHT-TCGGG------CHHHHHHHHHHHTTCCHHHHHHH T ss_pred HHHHHHHHH-CCCCC------CCCHHHHHHHHHCCCCHHHHHHH T ss_conf 999999980-54457------75532235797629988999999 Done!