Query         gi|254780135|ref|YP_003064548.1| hypothetical protein CLIBASIA_00070 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 408
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 23785
Date          Sun May 22 05:59:31 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780135.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2b2x_A Integrin alpha-1; compu  74.1     4.2 0.00018   19.2   4.7   79  302-394   124-212 (223)
  2 1pt6_A Integrin alpha-1; X-RAY  72.0     3.8 0.00016   19.5   4.0   49  345-393   138-196 (213)
  3 1mf7_A Integrin alpha M; cell   65.3     6.4 0.00027   18.0   5.5   79  303-394   107-190 (194)
  4 3gxb_A VON willebrand factor;   42.9      14  0.0006   15.5   5.0   50  343-394   126-175 (184)
  5 1v7p_C Integrin alpha-2; snake  37.6      17 0.00072   14.9   4.3   50  345-394   137-196 (200)
  6 1q0p_A Complement factor B; VO  35.3      19 0.00078   14.7   6.6   80  303-385   128-211 (223)
  7 1shu_X Anthrax toxin receptor   33.8      20 0.00082   14.5   4.1   44  346-391   135-179 (182)
  8 1n3y_A Integrin alpha-X; alpha  28.2      24   0.001   13.9   5.1   80  301-393   109-193 (198)
  9 1v9v_A KIAA0561 protein; helix  23.7      29  0.0012   13.3   2.0   39   49-88     10-49  (114)
 10 3kp1_E D-ornithine aminomutase  22.2     8.3 0.00035   17.1  -1.4   37   35-78     66-102 (121)

No 1  
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune system; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=74.12  E-value=4.2  Score=19.23  Aligned_cols=79  Identities=20%  Similarity=0.466  Sum_probs=49.5

Q ss_pred             CCEEEEEEEECCCCCHHHCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCHH--------HHHHHHCCCCHH-
Q ss_conf             53068867634410011115788999999889887631357741899984148874302--------678762059032-
Q gi|254780135|r  302 HSKYMLMFAIGNQLSRSSVGKETIDRILQDCYYMHKHHRTGRGAITIFSVGFSPDQDTR--------YTLRQCASDPSK-  372 (408)
Q Consensus       302 hskymlmfaignqlsrssvgketidrilqdcyymhkhhrtgrgaitifsvgfspdqdtr--------ytlrqcasdpsk-  372 (408)
                      ..|.++++.-|.  +...   ..+....+..      .   ...|+||.||..++-+..        -.|++-||+|+. 
T Consensus       124 ~~kvlillTDG~--~~d~---~~~~~~a~~l------k---~~gi~v~~Igvg~~~~~~~~~~~~~~~eL~~IAs~p~~~  189 (223)
T 2b2x_A          124 VKKVMVIVTDGE--SHDN---YRLKQVIQDC------E---DENIQRFSIAILGHYNRGNLSTEKFVEEIKSIASEPTEK  189 (223)
T ss_dssp             SEEEEEEEESSC--CTTG---GGHHHHHHHH------H---TTTEEEEEEEECGGGC---CCCHHHHHHHHTTSCSSGGG
T ss_pred             CCEEEEEEECCC--CCCC---HHHHHHHHHH------H---HCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCC
T ss_conf             725799982698--7883---1299999999------8---759989999984666644324423699999986699855


Q ss_pred             -EEEECCCCCHHHHHHHHHHHHH
Q ss_conf             -0442587653447898777778
Q gi|254780135|r  373 -YYEINSDENVMPIAKSLARNVI  394 (408)
Q Consensus       373 -yyeinsdenvmpiakslarnvi  394 (408)
                       .|.+.+-+....+.+.|+..+.
T Consensus       190 ~~f~~~d~~~L~~i~~~l~~~ic  212 (223)
T 2b2x_A          190 HFFNVSDELALVTIVKALGERIF  212 (223)
T ss_dssp             TEEEESSTTGGGGGHHHHHTTTC
T ss_pred             CEEECCCHHHHHHHHHHHHHHHC
T ss_conf             18981899999999999998864


No 2  
>1pt6_A Integrin alpha-1; X-RAY diffraction, cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=71.97  E-value=3.8  Score=19.51  Aligned_cols=49  Identities=18%  Similarity=0.446  Sum_probs=38.0

Q ss_pred             EEEEEEEECCCCCCH--------HHHHHHHCCCCHH--EEEECCCCCHHHHHHHHHHHH
Q ss_conf             189998414887430--------2678762059032--044258765344789877777
Q gi|254780135|r  345 AITIFSVGFSPDQDT--------RYTLRQCASDPSK--YYEINSDENVMPIAKSLARNV  393 (408)
Q Consensus       345 aitifsvgfspdqdt--------rytlrqcasdpsk--yyeinsdenvmpiakslarnv  393 (408)
                      .|++|.||..++-+.        .-.|+..||+|+.  +|.+.+.+....|.+.|...+
T Consensus       138 gi~v~~Vgvg~~~~~~~~~~~~~~~eL~~iAs~p~~~~~f~~~~~~~L~~i~~~l~~~i  196 (213)
T 1pt6_A          138 NIQRFSIAILGSYNRGNLSTEKFVEEIKSIASEPTEKHFFNVSDELALVTIVKTLGERI  196 (213)
T ss_dssp             TEEEEEEEECHHHHHTTCCCHHHHHHHHHHSCSSHHHHEEEESSGGGGGGGHHHHHHHH
T ss_pred             CCEEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHH
T ss_conf             99999999747655454333246999999866998540898089999999999999997


No 3  
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 1n9z_A 1bhq_1 1bho_1 1idn_1
Probab=65.33  E-value=6.4  Score=17.96  Aligned_cols=79  Identities=16%  Similarity=0.294  Sum_probs=47.3

Q ss_pred             CEEEEEEEECCCCCHHHCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCH---HHHHHHHCCCCHH--EEEEC
Q ss_conf             306886763441001111578899999988988763135774189998414887430---2678762059032--04425
Q gi|254780135|r  303 SKYMLMFAIGNQLSRSSVGKETIDRILQDCYYMHKHHRTGRGAITIFSVGFSPDQDT---RYTLRQCASDPSK--YYEIN  377 (408)
Q Consensus       303 skymlmfaignqlsrssvgketidrilqdcyymhkhhrtgrgaitifsvgfspdqdt---rytlrqcasdpsk--yyein  377 (408)
                      .|+++++.=|..-....--.+.+ +.++.            -.|++|.||+..+-..   .-.|+.+|++|+.  .|.+.
T Consensus       107 ~kvvvl~tDG~~~~~~~~~~~~~-~~l~~------------~gv~v~~Vgi~~~~~~~~~~~~L~~iAs~~~~~~~~~v~  173 (194)
T 1mf7_A          107 FKILVVITDGEKFGDPLGYEDVI-PEADR------------EGVIRYVIGVGDAFRSEKSRQELNTIASKPPRDHVFQVN  173 (194)
T ss_dssp             EEEEEEEESSCCBSCSSCGGGTH-HHHHH------------TTEEEEEEEESGGGCSHHHHHHHHHHSCSSHHHHEEEES
T ss_pred             CEEEEEEECCCCCCCHHHHHHHH-HHHHH------------CCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCEEEEEC
T ss_conf             64999994788789804499999-99997------------799999999788766634699999986699866089949


Q ss_pred             CCCCHHHHHHHHHHHHH
Q ss_conf             87653447898777778
Q gi|254780135|r  378 SDENVMPIAKSLARNVI  394 (408)
Q Consensus       378 sdenvmpiakslarnvi  394 (408)
                      +-+..-++.+.+++...
T Consensus       174 ~~~~L~~~~~~l~~~i~  190 (194)
T 1mf7_A          174 NFEALKTIQNQLREKIF  190 (194)
T ss_dssp             SGGGGGGGHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHC
T ss_conf             99999999999987641


No 4  
>3gxb_A VON willebrand factor; VWA-like fold, blood coagulation, cell adhesion, cleavage on PAIR of basic residues, disease mutation, disulfide bond; HET: NAG; 1.90A {Homo sapiens}
Probab=42.93  E-value=14  Score=15.48  Aligned_cols=50  Identities=20%  Similarity=0.284  Sum_probs=33.9

Q ss_pred             CCEEEEEEEECCCCCCHHHHHHHHCCCCHHEEEECCCCCHHHHHHHHHHHHH
Q ss_conf             7418999841488743026787620590320442587653447898777778
Q gi|254780135|r  343 RGAITIFSVGFSPDQDTRYTLRQCASDPSKYYEINSDENVMPIAKSLARNVI  394 (408)
Q Consensus       343 rgaitifsvgfspdqdtrytlrqcasdpskyyeinsdenvmpiakslarnvi  394 (408)
                      +..|+||.||..++-|.. .|+..|+ |++++.+++-+..-.+...+...+.
T Consensus       126 ~~gi~i~~vgvG~~~~~~-~L~~ia~-~~~~~~~~~~~~L~~~~~~l~~~~c  175 (184)
T 3gxb_A          126 PGDIQVVPIGVGPNANVQ-ELERIGW-PNAPILIQDFETLPREAPDLVLQRC  175 (184)
T ss_dssp             CTTEEEEEEEESTTSCHH-HHHHHHT-TSCCEEESCTTTHHHHHHHHHHHHH
T ss_pred             HCCCEEEEEECCCCCCHH-HHHHHCC-CCCEEEECCHHHHHHHHHHHHHHHC
T ss_conf             489989999846747999-9998739-9977994899999999999997546


No 5  
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhesion, glycoprotein, toxin/cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=37.62  E-value=17  Score=14.92  Aligned_cols=50  Identities=14%  Similarity=0.323  Sum_probs=35.0

Q ss_pred             EEEEEEEECCCCCCH--------HHHHHHHCCCCHH--EEEECCCCCHHHHHHHHHHHHH
Q ss_conf             189998414887430--------2678762059032--0442587653447898777778
Q gi|254780135|r  345 AITIFSVGFSPDQDT--------RYTLRQCASDPSK--YYEINSDENVMPIAKSLARNVI  394 (408)
Q Consensus       345 aitifsvgfspdqdt--------rytlrqcasdpsk--yyeinsdenvmpiakslarnvi  394 (408)
                      .|++|.||..+..+.        .-.|+..||+|+.  .|.+.+-+....+.+.|++.+.
T Consensus       137 gi~i~~Igvg~~~~~~~~~~~~~~~eL~~iAs~p~~~~~f~~~d~~~L~~~~~~l~~~ic  196 (200)
T 1v7p_C          137 NILRFGIAVLGYLNRNALDTKNLIKEIKAIASIPTERYFFNVSDEAALLEKAGTLGEQIF  196 (200)
T ss_dssp             TEEEEEEEECHHHHHTTCCCHHHHHHHHHHSCSSHHHHEEEESSSGGGHHHHHHHHHHHH
T ss_pred             CEEEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHH
T ss_conf             909999997774455654431259999998669986139993899999999999997720


No 6  
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=35.26  E-value=19  Score=14.67  Aligned_cols=80  Identities=15%  Similarity=0.297  Sum_probs=43.6

Q ss_pred             CEEEEEEEECCCCCHHHCCHHHHHHHHHHHHHHHH-HCCCCCCEEEEEEEECCCCCCHHHHHHHHCCCCHH---EEEECC
Q ss_conf             30688676344100111157889999998898876-31357741899984148874302678762059032---044258
Q gi|254780135|r  303 SKYMLMFAIGNQLSRSSVGKETIDRILQDCYYMHK-HHRTGRGAITIFSVGFSPDQDTRYTLRQCASDPSK---YYEINS  378 (408)
Q Consensus       303 skymlmfaignqlsrssvgketidrilqdcyymhk-hhrtgrgaitifsvgfspdqdtrytlrqcasdpsk---yyeins  378 (408)
                      .|+...+.-|..-.- .-..+.+++ ++++..... -.......+.+|++|+.++.+. -.|+..|+.|..   +|.+++
T Consensus       128 ~~~ivllTDG~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~i~~igvg~~~~~-~~L~~iAs~~~~~~~~~~~~d  204 (223)
T 1q0p_A          128 RHVIILMTDGLHNMG-GDPITVIDE-IRDLLYIGKDRKNPREDYLDVYVFGVGPLVNQ-VNINALASKKDNEQHVFKVKD  204 (223)
T ss_dssp             EEEEEEEECSCCCSS-SCTHHHHHH-HHHHTTCSCBTTBCCGGGEEEEEEECSSCCCH-HHHHHHSCCCTTCCCEEETTC
T ss_pred             CEEEEEECCCCCCCC-CCHHHHHHH-HHHHHHHHHHHHHHHHCCCEEEEEECCCCCCH-HHHHHHHCCCCCCEEEEECCC
T ss_conf             428999768876778-982899999-98633467999998767965999736875699-999999749899747999089


Q ss_pred             CCCHHHH
Q ss_conf             7653447
Q gi|254780135|r  379 DENVMPI  385 (408)
Q Consensus       379 denvmpi  385 (408)
                      -+....+
T Consensus       205 ~~~L~~~  211 (223)
T 1q0p_A          205 MENLEDV  211 (223)
T ss_dssp             -------
T ss_pred             HHHHHHH
T ss_conf             9999999


No 7  
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=33.75  E-value=20  Score=14.51  Aligned_cols=44  Identities=14%  Similarity=0.292  Sum_probs=30.1

Q ss_pred             EEEEEEECCCCCCHHHHHHHHCCCCHHEEEECCC-CCHHHHHHHHHH
Q ss_conf             8999841488743026787620590320442587-653447898777
Q gi|254780135|r  346 ITIFSVGFSPDQDTRYTLRQCASDPSKYYEINSD-ENVMPIAKSLAR  391 (408)
Q Consensus       346 itifsvgfspdqdtrytlrqcasdpskyyeinsd-envmpiakslar  391 (408)
                      |.+|.||+.+. | .-.|++.|++|...|...++ +..-.+.+.+++
T Consensus       135 v~v~~Vgig~~-~-~~~L~~ia~~~~~~~~~~~~~~~L~~~~~~i~~  179 (182)
T 1shu_X          135 ASVYCVGVLDF-E-QAQLERIADSKEQVFPVKGGFQALKGIINSILA  179 (182)
T ss_dssp             CEEEEEECSSC-C-HHHHHHHSSSGGGEEESSSTTHHHHHHHHHHHH
T ss_pred             CEEEEEEECCC-C-HHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHH
T ss_conf             99999984754-8-999999858999669934999999999999986


No 8  
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=28.20  E-value=24  Score=13.88  Aligned_cols=80  Identities=14%  Similarity=0.263  Sum_probs=44.7

Q ss_pred             CCCEEEEEEEECCCCCHHHCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCH---HHHHHHHCCCCHH--EEE
Q ss_conf             65306886763441001111578899999988988763135774189998414887430---2678762059032--044
Q gi|254780135|r  301 SHSKYMLMFAIGNQLSRSSVGKETIDRILQDCYYMHKHHRTGRGAITIFSVGFSPDQDT---RYTLRQCASDPSK--YYE  375 (408)
Q Consensus       301 shskymlmfaignqlsrssvgketidrilqdcyymhkhhrtgrgaitifsvgfspdqdt---rytlrqcasdpsk--yye  375 (408)
                      ...|.++++.-|..-..    ........+.+-         .-.+.+|.||..++.+.   .-.|+..|+.|+.  ++.
T Consensus       109 ~~~kvivlltDG~~~~~----~~~~~~~~~~~~---------~~gv~i~~Ig~g~~~~~~~~~~~L~~ias~~~~~~~~~  175 (198)
T 1n3y_A          109 DAAKILIVITDGKKEGD----SLDYKDVIPMAD---------AAGIIRYAIGVGLAFQNRNSWKELNDIASKPSQEHIFK  175 (198)
T ss_dssp             TSEEEEEEEESSCCBSC----SSCHHHHHHHHH---------HTTCEEEEEEESGGGGSSTTHHHHHHHSCSSSGGGEEE
T ss_pred             CCCCEEEEEECCCCCCC----CCCHHHHHHHHH---------HCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCEEEE
T ss_conf             76425999935898887----205999999999---------78988999997876677534999999866998651999


Q ss_pred             ECCCCCHHHHHHHHHHHH
Q ss_conf             258765344789877777
Q gi|254780135|r  376 INSDENVMPIAKSLARNV  393 (408)
Q Consensus       376 insdenvmpiakslarnv  393 (408)
                      +++-+..-.+.+.+.+.+
T Consensus       176 ~~~~~~L~~i~~~l~~~i  193 (198)
T 1n3y_A          176 VEDFDALKDIQNQLKEKI  193 (198)
T ss_dssp             ESSGGGGGGGHHHHHHHH
T ss_pred             ECCHHHHHHHHHHHHHHH
T ss_conf             299999999999999873


No 9  
>1v9v_A KIAA0561 protein; helix bundle, MAST205, microtubule-associated serine/threonine protein kinase, structural genomics; NMR {Homo sapiens} SCOP: a.29.10.1
Probab=23.67  E-value=29  Score=13.32  Aligned_cols=39  Identities=33%  Similarity=0.390  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHH-HHH
Q ss_conf             8888999987764106843236677412235789999-987
Q gi|254780135|r   49 KTALLQEVLDHVIYRTSPKNLYDLREAGRDNFIRHQI-EKA   88 (408)
Q Consensus        49 ktallqevldhviyrtspknlydlreagrdnfirhqi-eka   88 (408)
                      .||-..|-|...|-.-+|.+...+. .|--+|+.||| |-|
T Consensus        10 AtaQMEerL~~fi~~~~~~~~~~la-Dgvl~FvhHQiiElA   49 (114)
T 1v9v_A           10 ATAQMEGRLQEFLTAYAPGARLALA-DGVLGFIHHQIVELA   49 (114)
T ss_dssp             TTHHHHHHHHHHHHHSCBTTTBCCS-CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCHH-HHHHHHHHHHHHHHH
T ss_conf             1899999999999976962344113-889999999999999


No 10 
>3kp1_E D-ornithine aminomutase S component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_E* 3koy_E* 3koz_E* 3kp0_E* 3kox_E*
Probab=22.17  E-value=8.3  Score=17.15  Aligned_cols=37  Identities=35%  Similarity=0.554  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCHH
Q ss_conf             99999876777777888899998776410684323667741223
Q gi|254780135|r   35 AIVDVVVDQVTVMQKTALLQEVLDHVIYRTSPKNLYDLREAGRD   78 (408)
Q Consensus        35 aivdvvvdqvtvmqktallqevldhviyrtspknlydlreagrd   78 (408)
                      +||+-|++. ..|.|      --.|+.||-+.+.--++||||+.
T Consensus        66 ~iVe~v~~~-gLlgK------GAGhvV~k~ak~~~i~i~eAG~~  102 (121)
T 3kp1_E           66 AIVDKTMDR-GLMGK------GAGHIVYKIAKEKNISVREAGLA  102 (121)
T ss_dssp             HHHHHHHHT-TCGGG------CHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHHH-CCCCC------CCCHHHHHHHHHCCCCHHHHHHH
T ss_conf             999999980-54457------75532235797629988999999


Done!