BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780135|ref|YP_003064548.1| hypothetical protein
CLIBASIA_00070 [Candidatus Liberibacter asiaticus str. psy62]
(408 letters)
Database: nr
13,984,884 sequences; 4,792,584,752 total letters
Searching..................................................done
Results from round 1
>gi|254780135|ref|YP_003064548.1| hypothetical protein CLIBASIA_00070 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254039812|gb|ACT56608.1| hypothetical protein CLIBASIA_00070 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 408
Score = 854 bits (2206), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/408 (100%), Positives = 408/408 (100%)
Query: 1 MFQNKNFLLGVLRLKKCTRGVFLVITAILLSSFVAIVDVVVDQVTVMQKTALLQEVLDHV 60
MFQNKNFLLGVLRLKKCTRGVFLVITAILLSSFVAIVDVVVDQVTVMQKTALLQEVLDHV
Sbjct: 1 MFQNKNFLLGVLRLKKCTRGVFLVITAILLSSFVAIVDVVVDQVTVMQKTALLQEVLDHV 60
Query: 61 IYRTSPKNLYDLREAGRDNFIRHQIEKALNTYNSRDLSNIGSIESIVKDAVILTKNVNSL 120
IYRTSPKNLYDLREAGRDNFIRHQIEKALNTYNSRDLSNIGSIESIVKDAVILTKNVNSL
Sbjct: 61 IYRTSPKNLYDLREAGRDNFIRHQIEKALNTYNSRDLSNIGSIESIVKDAVILTKNVNSL 120
Query: 121 PLQFTVDIALSTTVQLRGSLLQMFSQSKGKVDISRRKKVMYKQNIGLMIMPFAWDGYWLA 180
PLQFTVDIALSTTVQLRGSLLQMFSQSKGKVDISRRKKVMYKQNIGLMIMPFAWDGYWLA
Sbjct: 121 PLQFTVDIALSTTVQLRGSLLQMFSQSKGKVDISRRKKVMYKQNIGLMIMPFAWDGYWLA 180
Query: 181 SRGKVADSQVHRPKYLEYSHYYQQYLNRNTLVKNFLSQIPYKNFCMAPYHYKSIFYWAFE 240
SRGKVADSQVHRPKYLEYSHYYQQYLNRNTLVKNFLSQIPYKNFCMAPYHYKSIFYWAFE
Sbjct: 181 SRGKVADSQVHRPKYLEYSHYYQQYLNRNTLVKNFLSQIPYKNFCMAPYHYKSIFYWAFE 240
Query: 241 NFQYHQDNNMLIFYSHRDFYRITWDHFPYSFIKNVFDMTSNQFGDGQVLTNTNHCFPHGA 300
NFQYHQDNNMLIFYSHRDFYRITWDHFPYSFIKNVFDMTSNQFGDGQVLTNTNHCFPHGA
Sbjct: 241 NFQYHQDNNMLIFYSHRDFYRITWDHFPYSFIKNVFDMTSNQFGDGQVLTNTNHCFPHGA 300
Query: 301 SHSKYMLMFAIGNQLSRSSVGKETIDRILQDCYYMHKHHRTGRGAITIFSVGFSPDQDTR 360
SHSKYMLMFAIGNQLSRSSVGKETIDRILQDCYYMHKHHRTGRGAITIFSVGFSPDQDTR
Sbjct: 301 SHSKYMLMFAIGNQLSRSSVGKETIDRILQDCYYMHKHHRTGRGAITIFSVGFSPDQDTR 360
Query: 361 YTLRQCASDPSKYYEINSDENVMPIAKSLARNVITNWFSQFTITVVDS 408
YTLRQCASDPSKYYEINSDENVMPIAKSLARNVITNWFSQFTITVVDS
Sbjct: 361 YTLRQCASDPSKYYEINSDENVMPIAKSLARNVITNWFSQFTITVVDS 408
>gi|254780914|ref|YP_003065327.1| hypothetical protein CLIBASIA_04065 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254780929|ref|YP_003065342.1| hypothetical protein CLIBASIA_04140 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040591|gb|ACT57387.1| hypothetical protein CLIBASIA_04065 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040606|gb|ACT57402.1| hypothetical protein CLIBASIA_04140 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 408
Score = 744 bits (1921), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/408 (91%), Positives = 381/408 (93%)
Query: 1 MFQNKNFLLGVLRLKKCTRGVFLVITAILLSSFVAIVDVVVDQVTVMQKTALLQEVLDHV 60
MFQNKNFLLGVLRLKKCTRGVFLVITAILLSSFVAIVDVVVDQVTVMQKTA LQEVLDHV
Sbjct: 1 MFQNKNFLLGVLRLKKCTRGVFLVITAILLSSFVAIVDVVVDQVTVMQKTAWLQEVLDHV 60
Query: 61 IYRTSPKNLYDLREAGRDNFIRHQIEKALNTYNSRDLSNIGSIESIVKDAVILTKNVNSL 120
IYRTSPKNLYDLREAGRDNFIRHQIEKALNTYNSRDLSNIGSIESIVKDAVILTKNVNSL
Sbjct: 61 IYRTSPKNLYDLREAGRDNFIRHQIEKALNTYNSRDLSNIGSIESIVKDAVILTKNVNSL 120
Query: 121 PLQFTVDIALSTTVQLRGSLLQMFSQSKGKVDISRRKKVMYKQNIGLMIMPFAWDGYWLA 180
PLQFTVDIALSTTVQLRGSLLQMFSQSKGKVDISRRKKVMYKQNIGLMIMPFAWDGYWLA
Sbjct: 121 PLQFTVDIALSTTVQLRGSLLQMFSQSKGKVDISRRKKVMYKQNIGLMIMPFAWDGYWLA 180
Query: 181 SRGKVADSQVHRPKYLEYSHYYQQYLNRNTLVKNFLSQIPYKNFCMAPYHYKSIFYWAFE 240
SRGKVADS+VH PKYLEYSHYYQQYLNRNTLVKNFLSQIPYKNFCMAPYHY SI YWA
Sbjct: 181 SRGKVADSKVHPPKYLEYSHYYQQYLNRNTLVKNFLSQIPYKNFCMAPYHYSSILYWAVG 240
Query: 241 NFQYHQDNNMLIFYSHRDFYRITWDHFPYSFIKNVFDMTSNQFGDGQVLTNTNHCFPHGA 300
Y DN ++D Y TWDHFPYSFIKNVFDMTSNQFGDGQVLTNTNHCFPHGA
Sbjct: 241 TLTYSVDNKTTTREYYKDPYYATWDHFPYSFIKNVFDMTSNQFGDGQVLTNTNHCFPHGA 300
Query: 301 SHSKYMLMFAIGNQLSRSSVGKETIDRILQDCYYMHKHHRTGRGAITIFSVGFSPDQDTR 360
S +KYMLM AIGNQLSRSSV KE I+++LQDC+YMHK HRTGR AITIFSVGFSPDQDTR
Sbjct: 301 SQNKYMLMLAIGNQLSRSSVEKEKIEKVLQDCHYMHKRHRTGRDAITIFSVGFSPDQDTR 360
Query: 361 YTLRQCASDPSKYYEINSDENVMPIAKSLARNVITNWFSQFTITVVDS 408
YTLRQCASDPSKYYEINSDENVMPIAKSLARNVITNWFSQFTITVVDS
Sbjct: 361 YTLRQCASDPSKYYEINSDENVMPIAKSLARNVITNWFSQFTITVVDS 408
>gi|254781007|ref|YP_003065420.1| hypothetical protein CLIBASIA_04540 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040684|gb|ACT57480.1| hypothetical protein CLIBASIA_04540 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 411
Score = 743 bits (1917), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/408 (91%), Positives = 380/408 (93%)
Query: 1 MFQNKNFLLGVLRLKKCTRGVFLVITAILLSSFVAIVDVVVDQVTVMQKTALLQEVLDHV 60
MFQNKNFLLGVLRLKKCTRGVFLVITAILLSSFVAIVDVVVDQVTVMQKTA LQEVLDHV
Sbjct: 1 MFQNKNFLLGVLRLKKCTRGVFLVITAILLSSFVAIVDVVVDQVTVMQKTAWLQEVLDHV 60
Query: 61 IYRTSPKNLYDLREAGRDNFIRHQIEKALNTYNSRDLSNIGSIESIVKDAVILTKNVNSL 120
IYRTSPKNLYDLREAGRDNFIRHQIEKALNTYNSRDLSN GSIESIVKDAVILTKNVNSL
Sbjct: 61 IYRTSPKNLYDLREAGRDNFIRHQIEKALNTYNSRDLSNTGSIESIVKDAVILTKNVNSL 120
Query: 121 PLQFTVDIALSTTVQLRGSLLQMFSQSKGKVDISRRKKVMYKQNIGLMIMPFAWDGYWLA 180
PLQFTVDIALSTTVQLRGSLLQMFSQSKGKVDISRRKKVMYKQNIGLMIMPFAWDGYWLA
Sbjct: 121 PLQFTVDIALSTTVQLRGSLLQMFSQSKGKVDISRRKKVMYKQNIGLMIMPFAWDGYWLA 180
Query: 181 SRGKVADSQVHRPKYLEYSHYYQQYLNRNTLVKNFLSQIPYKNFCMAPYHYKSIFYWAFE 240
SRGKVADS+VH PKYLEYSHYYQQYLNRNTLVKNFLSQIPYKNFCMAPYHY SI YWA
Sbjct: 181 SRGKVADSKVHPPKYLEYSHYYQQYLNRNTLVKNFLSQIPYKNFCMAPYHYSSILYWAVG 240
Query: 241 NFQYHQDNNMLIFYSHRDFYRITWDHFPYSFIKNVFDMTSNQFGDGQVLTNTNHCFPHGA 300
Y DN ++D Y TWDHFPYSFIKNVFDMTSNQFGDGQVLTNTNHCFPHGA
Sbjct: 241 TLTYSVDNKTTTREYYKDPYYATWDHFPYSFIKNVFDMTSNQFGDGQVLTNTNHCFPHGA 300
Query: 301 SHSKYMLMFAIGNQLSRSSVGKETIDRILQDCYYMHKHHRTGRGAITIFSVGFSPDQDTR 360
S +KYMLM AIGNQLSRSSV KE I+++LQDC+YMHK HRTGR AITIFSVGFSPDQDTR
Sbjct: 301 SQNKYMLMLAIGNQLSRSSVEKEKIEKVLQDCHYMHKRHRTGRDAITIFSVGFSPDQDTR 360
Query: 361 YTLRQCASDPSKYYEINSDENVMPIAKSLARNVITNWFSQFTITVVDS 408
YTLRQCASDPSKYYEINSDENVMPIAKSLARNVITNWFSQFTITVVDS
Sbjct: 361 YTLRQCASDPSKYYEINSDENVMPIAKSLARNVITNWFSQFTITVVDS 408
>gi|315122409|ref|YP_004062898.1| hypothetical protein CKC_03305 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495811|gb|ADR52410.1| hypothetical protein CKC_03305 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 411
Score = 219 bits (559), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 138/416 (33%), Positives = 216/416 (51%), Gaps = 21/416 (5%)
Query: 1 MFQNKNFLLGVLRLKKCTRGVFLVITAILLSSFVAIVDVVVDQVTVMQKTALLQEVLDHV 60
MF +NFL RL CT G FL+++A+LLSSF+ I+D++ D +++ +LQ +D+
Sbjct: 1 MFYYRNFLSVFSRLNHCTNGSFLIVSAVLLSSFLTIMDIMRDYTDMIRVRNMLQSSIDYA 60
Query: 61 IYRTSPKNLYDLREAGRDNFIRHQIEKALNTYNSRDLSNIGSIESIVKDAVILTKNVNSL 120
++ +P L R+ I+ +I L++ L I+ IV + + +
Sbjct: 61 LH-NNPNELSVGTIKQREMLIKKRIGYFLDSNYKGTLLTEEQIKLIVNQSTVSITERSFY 119
Query: 121 PLQFTVDIALSTTVQLRGSLLQMFSQSKGKVDISRRKKVMYKQNIGLMIMPFAWDGYWLA 180
P QF ++I L +QL+ +L M K +IS+RK +YK+N+ LM++PF W G W+
Sbjct: 120 PQQFHINIELHKNIQLKSLILHMAMNPKKDFNISQRKSSLYKKNVALMVVPFTWTGEWIP 179
Query: 181 SR---GKVADSQVHRPKYLEYSHYYQ-QYLN-RNTLVKNFLSQIPYKNFCMAPYHYKSIF 235
+ SQ P L+ H+ + +Y N RN K FLS+I N C+APYHY +I
Sbjct: 180 PSLFTTQFTVSQDLLPSDLKTEHFKKTEYFNKRNQFFKMFLSKIKENNLCIAPYHYSAIV 239
Query: 236 YWAFENFQYHQDNNMLIFYSHRDF----YRITWDHFPYSFIKNVF---DMTSNQFGDGQV 288
YW+ F Y + YS RD Y WD P ++I ++F ++ SN+
Sbjct: 240 YWSEGIFSYKLPFSTTFLYSFRDIYVKQYSTIWDMKPSNYILDLFAGAELHSNR------ 293
Query: 289 LTNTNHCFPHGASHSKYMLMFAIGNQLSRSSVGKETIDRILQDCYYMHKHH-RTGRGAIT 347
LT + CF G K+ML+ A GNQ+S E ++ C M K+ + + IT
Sbjct: 294 LTPADPCFRRGVIQKKFMLIIAAGNQISDRKNSAEYF-KMKHGCTLMGKNMGKNPQEEIT 352
Query: 348 IFSVGFSPDQDTRYTLRQCASDPSKYYEINSDENVMPIAKSLARNVITNWFSQFTI 403
++S+G SPD DT+ L QC P +YYEI S +++ P+ L RN+ + W F+I
Sbjct: 353 VYSLGISPDPDTKRDLIQCTRHPDRYYEIQSYKDIAPVIDRLERNISSVWNDGFSI 408
>gi|294875617|ref|XP_002767406.1| synaptojanin, putative [Perkinsus marinus ATCC 50983]
gi|239868969|gb|EER00124.1| synaptojanin, putative [Perkinsus marinus ATCC 50983]
Length = 805
Score = 41.2 bits (95), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 62/127 (48%), Gaps = 27/127 (21%)
Query: 62 YRTSPKNLYDLREA---GRDNFIRHQIEKALNTYNSRDLSNIGSIESIVKDAVILTKNVN 118
Y +SP L D +A GR + +R A YN R L ++G + + V+ ++L
Sbjct: 242 YISSPTPLSDYLDAILIGRRSCLR-----AGTRYNHRGLDDLGDVANFVETELLLCNR-- 294
Query: 119 SLPLQFTVDIALSTTVQLRGSLLQMFSQSKG------KVDISRRKKVM---YKQNIGLMI 169
D+ L+ +Q+RGS+ +SQ+ G ++DI+R K++ Y ++I +I
Sbjct: 295 --------DVVLAAHIQIRGSVPVFWSQNPGSNSSTQQLDITRSKEMTVLGYDKHISSLI 346
Query: 170 MPFAWDG 176
+ DG
Sbjct: 347 KRYGPDG 353
>gi|315122199|ref|YP_004062688.1| hypothetical protein CKC_02245 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495601|gb|ADR52200.1| hypothetical protein CKC_02245 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 463
Score = 36.6 bits (83), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 1 MFQNKNFLLGVLRLKKCTRGVFLVITAILLSSFVAIVDVVVDQV 44
M NK+ RLKKC G F VI+A+LL ++ +++D V
Sbjct: 1 MVFNKSLFFNFKRLKKCYNGSFFVISALLLPVIFMVIGLLIDLV 44
Searching..................................................done
Results from round 2
CONVERGED!
>gi|254780135|ref|YP_003064548.1| hypothetical protein CLIBASIA_00070 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254039812|gb|ACT56608.1| hypothetical protein CLIBASIA_00070 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 408
Score = 689 bits (1777), Expect = 0.0, Method: Composition-based stats.
Identities = 408/408 (100%), Positives = 408/408 (100%)
Query: 1 MFQNKNFLLGVLRLKKCTRGVFLVITAILLSSFVAIVDVVVDQVTVMQKTALLQEVLDHV 60
MFQNKNFLLGVLRLKKCTRGVFLVITAILLSSFVAIVDVVVDQVTVMQKTALLQEVLDHV
Sbjct: 1 MFQNKNFLLGVLRLKKCTRGVFLVITAILLSSFVAIVDVVVDQVTVMQKTALLQEVLDHV 60
Query: 61 IYRTSPKNLYDLREAGRDNFIRHQIEKALNTYNSRDLSNIGSIESIVKDAVILTKNVNSL 120
IYRTSPKNLYDLREAGRDNFIRHQIEKALNTYNSRDLSNIGSIESIVKDAVILTKNVNSL
Sbjct: 61 IYRTSPKNLYDLREAGRDNFIRHQIEKALNTYNSRDLSNIGSIESIVKDAVILTKNVNSL 120
Query: 121 PLQFTVDIALSTTVQLRGSLLQMFSQSKGKVDISRRKKVMYKQNIGLMIMPFAWDGYWLA 180
PLQFTVDIALSTTVQLRGSLLQMFSQSKGKVDISRRKKVMYKQNIGLMIMPFAWDGYWLA
Sbjct: 121 PLQFTVDIALSTTVQLRGSLLQMFSQSKGKVDISRRKKVMYKQNIGLMIMPFAWDGYWLA 180
Query: 181 SRGKVADSQVHRPKYLEYSHYYQQYLNRNTLVKNFLSQIPYKNFCMAPYHYKSIFYWAFE 240
SRGKVADSQVHRPKYLEYSHYYQQYLNRNTLVKNFLSQIPYKNFCMAPYHYKSIFYWAFE
Sbjct: 181 SRGKVADSQVHRPKYLEYSHYYQQYLNRNTLVKNFLSQIPYKNFCMAPYHYKSIFYWAFE 240
Query: 241 NFQYHQDNNMLIFYSHRDFYRITWDHFPYSFIKNVFDMTSNQFGDGQVLTNTNHCFPHGA 300
NFQYHQDNNMLIFYSHRDFYRITWDHFPYSFIKNVFDMTSNQFGDGQVLTNTNHCFPHGA
Sbjct: 241 NFQYHQDNNMLIFYSHRDFYRITWDHFPYSFIKNVFDMTSNQFGDGQVLTNTNHCFPHGA 300
Query: 301 SHSKYMLMFAIGNQLSRSSVGKETIDRILQDCYYMHKHHRTGRGAITIFSVGFSPDQDTR 360
SHSKYMLMFAIGNQLSRSSVGKETIDRILQDCYYMHKHHRTGRGAITIFSVGFSPDQDTR
Sbjct: 301 SHSKYMLMFAIGNQLSRSSVGKETIDRILQDCYYMHKHHRTGRGAITIFSVGFSPDQDTR 360
Query: 361 YTLRQCASDPSKYYEINSDENVMPIAKSLARNVITNWFSQFTITVVDS 408
YTLRQCASDPSKYYEINSDENVMPIAKSLARNVITNWFSQFTITVVDS
Sbjct: 361 YTLRQCASDPSKYYEINSDENVMPIAKSLARNVITNWFSQFTITVVDS 408
>gi|254780914|ref|YP_003065327.1| hypothetical protein CLIBASIA_04065 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254780929|ref|YP_003065342.1| hypothetical protein CLIBASIA_04140 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040591|gb|ACT57387.1| hypothetical protein CLIBASIA_04065 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040606|gb|ACT57402.1| hypothetical protein CLIBASIA_04140 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 408
Score = 667 bits (1721), Expect = 0.0, Method: Composition-based stats.
Identities = 373/408 (91%), Positives = 381/408 (93%)
Query: 1 MFQNKNFLLGVLRLKKCTRGVFLVITAILLSSFVAIVDVVVDQVTVMQKTALLQEVLDHV 60
MFQNKNFLLGVLRLKKCTRGVFLVITAILLSSFVAIVDVVVDQVTVMQKTA LQEVLDHV
Sbjct: 1 MFQNKNFLLGVLRLKKCTRGVFLVITAILLSSFVAIVDVVVDQVTVMQKTAWLQEVLDHV 60
Query: 61 IYRTSPKNLYDLREAGRDNFIRHQIEKALNTYNSRDLSNIGSIESIVKDAVILTKNVNSL 120
IYRTSPKNLYDLREAGRDNFIRHQIEKALNTYNSRDLSNIGSIESIVKDAVILTKNVNSL
Sbjct: 61 IYRTSPKNLYDLREAGRDNFIRHQIEKALNTYNSRDLSNIGSIESIVKDAVILTKNVNSL 120
Query: 121 PLQFTVDIALSTTVQLRGSLLQMFSQSKGKVDISRRKKVMYKQNIGLMIMPFAWDGYWLA 180
PLQFTVDIALSTTVQLRGSLLQMFSQSKGKVDISRRKKVMYKQNIGLMIMPFAWDGYWLA
Sbjct: 121 PLQFTVDIALSTTVQLRGSLLQMFSQSKGKVDISRRKKVMYKQNIGLMIMPFAWDGYWLA 180
Query: 181 SRGKVADSQVHRPKYLEYSHYYQQYLNRNTLVKNFLSQIPYKNFCMAPYHYKSIFYWAFE 240
SRGKVADS+VH PKYLEYSHYYQQYLNRNTLVKNFLSQIPYKNFCMAPYHY SI YWA
Sbjct: 181 SRGKVADSKVHPPKYLEYSHYYQQYLNRNTLVKNFLSQIPYKNFCMAPYHYSSILYWAVG 240
Query: 241 NFQYHQDNNMLIFYSHRDFYRITWDHFPYSFIKNVFDMTSNQFGDGQVLTNTNHCFPHGA 300
Y DN ++D Y TWDHFPYSFIKNVFDMTSNQFGDGQVLTNTNHCFPHGA
Sbjct: 241 TLTYSVDNKTTTREYYKDPYYATWDHFPYSFIKNVFDMTSNQFGDGQVLTNTNHCFPHGA 300
Query: 301 SHSKYMLMFAIGNQLSRSSVGKETIDRILQDCYYMHKHHRTGRGAITIFSVGFSPDQDTR 360
S +KYMLM AIGNQLSRSSV KE I+++LQDC+YMHK HRTGR AITIFSVGFSPDQDTR
Sbjct: 301 SQNKYMLMLAIGNQLSRSSVEKEKIEKVLQDCHYMHKRHRTGRDAITIFSVGFSPDQDTR 360
Query: 361 YTLRQCASDPSKYYEINSDENVMPIAKSLARNVITNWFSQFTITVVDS 408
YTLRQCASDPSKYYEINSDENVMPIAKSLARNVITNWFSQFTITVVDS
Sbjct: 361 YTLRQCASDPSKYYEINSDENVMPIAKSLARNVITNWFSQFTITVVDS 408
>gi|254781007|ref|YP_003065420.1| hypothetical protein CLIBASIA_04540 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040684|gb|ACT57480.1| hypothetical protein CLIBASIA_04540 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 411
Score = 666 bits (1717), Expect = 0.0, Method: Composition-based stats.
Identities = 372/408 (91%), Positives = 380/408 (93%)
Query: 1 MFQNKNFLLGVLRLKKCTRGVFLVITAILLSSFVAIVDVVVDQVTVMQKTALLQEVLDHV 60
MFQNKNFLLGVLRLKKCTRGVFLVITAILLSSFVAIVDVVVDQVTVMQKTA LQEVLDHV
Sbjct: 1 MFQNKNFLLGVLRLKKCTRGVFLVITAILLSSFVAIVDVVVDQVTVMQKTAWLQEVLDHV 60
Query: 61 IYRTSPKNLYDLREAGRDNFIRHQIEKALNTYNSRDLSNIGSIESIVKDAVILTKNVNSL 120
IYRTSPKNLYDLREAGRDNFIRHQIEKALNTYNSRDLSN GSIESIVKDAVILTKNVNSL
Sbjct: 61 IYRTSPKNLYDLREAGRDNFIRHQIEKALNTYNSRDLSNTGSIESIVKDAVILTKNVNSL 120
Query: 121 PLQFTVDIALSTTVQLRGSLLQMFSQSKGKVDISRRKKVMYKQNIGLMIMPFAWDGYWLA 180
PLQFTVDIALSTTVQLRGSLLQMFSQSKGKVDISRRKKVMYKQNIGLMIMPFAWDGYWLA
Sbjct: 121 PLQFTVDIALSTTVQLRGSLLQMFSQSKGKVDISRRKKVMYKQNIGLMIMPFAWDGYWLA 180
Query: 181 SRGKVADSQVHRPKYLEYSHYYQQYLNRNTLVKNFLSQIPYKNFCMAPYHYKSIFYWAFE 240
SRGKVADS+VH PKYLEYSHYYQQYLNRNTLVKNFLSQIPYKNFCMAPYHY SI YWA
Sbjct: 181 SRGKVADSKVHPPKYLEYSHYYQQYLNRNTLVKNFLSQIPYKNFCMAPYHYSSILYWAVG 240
Query: 241 NFQYHQDNNMLIFYSHRDFYRITWDHFPYSFIKNVFDMTSNQFGDGQVLTNTNHCFPHGA 300
Y DN ++D Y TWDHFPYSFIKNVFDMTSNQFGDGQVLTNTNHCFPHGA
Sbjct: 241 TLTYSVDNKTTTREYYKDPYYATWDHFPYSFIKNVFDMTSNQFGDGQVLTNTNHCFPHGA 300
Query: 301 SHSKYMLMFAIGNQLSRSSVGKETIDRILQDCYYMHKHHRTGRGAITIFSVGFSPDQDTR 360
S +KYMLM AIGNQLSRSSV KE I+++LQDC+YMHK HRTGR AITIFSVGFSPDQDTR
Sbjct: 301 SQNKYMLMLAIGNQLSRSSVEKEKIEKVLQDCHYMHKRHRTGRDAITIFSVGFSPDQDTR 360
Query: 361 YTLRQCASDPSKYYEINSDENVMPIAKSLARNVITNWFSQFTITVVDS 408
YTLRQCASDPSKYYEINSDENVMPIAKSLARNVITNWFSQFTITVVDS
Sbjct: 361 YTLRQCASDPSKYYEINSDENVMPIAKSLARNVITNWFSQFTITVVDS 408
>gi|315122409|ref|YP_004062898.1| hypothetical protein CKC_03305 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495811|gb|ADR52410.1| hypothetical protein CKC_03305 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 411
Score = 582 bits (1500), Expect = e-164, Method: Composition-based stats.
Identities = 138/416 (33%), Positives = 216/416 (51%), Gaps = 21/416 (5%)
Query: 1 MFQNKNFLLGVLRLKKCTRGVFLVITAILLSSFVAIVDVVVDQVTVMQKTALLQEVLDHV 60
MF +NFL RL CT G FL+++A+LLSSF+ I+D++ D +++ +LQ +D+
Sbjct: 1 MFYYRNFLSVFSRLNHCTNGSFLIVSAVLLSSFLTIMDIMRDYTDMIRVRNMLQSSIDYA 60
Query: 61 IYRTSPKNLYDLREAGRDNFIRHQIEKALNTYNSRDLSNIGSIESIVKDAVILTKNVNSL 120
++ +P L R+ I+ +I L++ L I+ IV + + +
Sbjct: 61 LH-NNPNELSVGTIKQREMLIKKRIGYFLDSNYKGTLLTEEQIKLIVNQSTVSITERSFY 119
Query: 121 PLQFTVDIALSTTVQLRGSLLQMFSQSKGKVDISRRKKVMYKQNIGLMIMPFAWDGYWLA 180
P QF ++I L +QL+ +L M K +IS+RK +YK+N+ LM++PF W G W+
Sbjct: 120 PQQFHINIELHKNIQLKSLILHMAMNPKKDFNISQRKSSLYKKNVALMVVPFTWTGEWIP 179
Query: 181 SR---GKVADSQVHRPKYLEYSHYYQ-QYLN-RNTLVKNFLSQIPYKNFCMAPYHYKSIF 235
+ SQ P L+ H+ + +Y N RN K FLS+I N C+APYHY +I
Sbjct: 180 PSLFTTQFTVSQDLLPSDLKTEHFKKTEYFNKRNQFFKMFLSKIKENNLCIAPYHYSAIV 239
Query: 236 YWAFENFQYHQDNNMLIFYSHRDF----YRITWDHFPYSFIKNVF---DMTSNQFGDGQV 288
YW+ F Y + YS RD Y WD P ++I ++F ++ SN+
Sbjct: 240 YWSEGIFSYKLPFSTTFLYSFRDIYVKQYSTIWDMKPSNYILDLFAGAELHSNR------ 293
Query: 289 LTNTNHCFPHGASHSKYMLMFAIGNQLSRSSVGKETIDRILQDCYYMHKHH-RTGRGAIT 347
LT + CF G K+ML+ A GNQ+S E ++ C M K+ + + IT
Sbjct: 294 LTPADPCFRRGVIQKKFMLIIAAGNQISDRKNSAEYF-KMKHGCTLMGKNMGKNPQEEIT 352
Query: 348 IFSVGFSPDQDTRYTLRQCASDPSKYYEINSDENVMPIAKSLARNVITNWFSQFTI 403
++S+G SPD DT+ L QC P +YYEI S +++ P+ L RN+ + W F+I
Sbjct: 353 VYSLGISPDPDTKRDLIQCTRHPDRYYEIQSYKDIAPVIDRLERNISSVWNDGFSI 408
>gi|315122199|ref|YP_004062688.1| hypothetical protein CKC_02245 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495601|gb|ADR52200.1| hypothetical protein CKC_02245 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 463
Score = 43.1 bits (100), Expect = 0.072, Method: Composition-based stats.
Identities = 30/144 (20%), Positives = 57/144 (39%), Gaps = 11/144 (7%)
Query: 1 MFQNKNFLLGVLRLKKCTRGVFLVITAILLSSFVAIVDVVVDQVTVMQKTALLQEVLDHV 60
M NK+ RLKKC G F VI+A+LL ++ +++D V L + ++
Sbjct: 1 MVFNKSLFFNFKRLKKCYNGSFFVISALLLPVIFMVIGLLIDLVRWGYYHNSLVQAVNTA 60
Query: 61 IYRTSPKNLYDLREAGRDNFIRHQIE------KALNTYNSRDLSNIGSIESIVKDAVILT 114
S + L + + ++ + + LN +N G ++S +I
Sbjct: 61 ALSASVQLLNSVEDKSKEKALSSVLGENNIKQYLLNNLKISLYNNFGEMDS---QRIIQH 117
Query: 115 KNVNSLPLQFT--VDIALSTTVQL 136
VN + T +++ + L
Sbjct: 118 TKVNIYNRKGTHIINVYSHYNLPL 141
>gi|226499930|ref|NP_001141473.1| hypothetical protein LOC100273583 [Zea mays]
gi|194704720|gb|ACF86444.1| unknown [Zea mays]
Length = 504
Score = 40.1 bits (92), Expect = 0.64, Method: Composition-based stats.
Identities = 17/95 (17%), Positives = 37/95 (38%), Gaps = 2/95 (2%)
Query: 232 KSIFYWAFENFQYHQDNNMLIFYSHRDFYRITWDHFPYSFIKNVFDMTSNQFGDGQVLTN 291
+ + + E N + Y ++ +F + ++ F G + T
Sbjct: 208 AQLAFVSDEVLPPKLSYNYTFIETTYTLYTNSFLNFGQNAAQDSFHEMLRSRGSSENATL 267
Query: 292 TNHCFPHGASHSKYMLMFAIGNQLSRSSVGKETID 326
+ C P G S ++ M++ G SRS++ + +D
Sbjct: 268 ADPCAPRGYSRNEEMMLRMSG--ASRSTLENQYVD 300
>gi|194701456|gb|ACF84812.1| unknown [Zea mays]
Length = 374
Score = 39.7 bits (91), Expect = 0.83, Method: Composition-based stats.
Identities = 17/95 (17%), Positives = 37/95 (38%), Gaps = 2/95 (2%)
Query: 232 KSIFYWAFENFQYHQDNNMLIFYSHRDFYRITWDHFPYSFIKNVFDMTSNQFGDGQVLTN 291
+ + + E N + Y ++ +F + ++ F G + T
Sbjct: 78 AQLAFVSDEVLPPKLSYNYTFIETTYTLYTNSFLNFGQNAAQDSFHEMLRSRGSSENATL 137
Query: 292 TNHCFPHGASHSKYMLMFAIGNQLSRSSVGKETID 326
+ C P G S ++ M++ G SRS++ + +D
Sbjct: 138 ADPCAPRGYSRNEEMMLRMSG--ASRSTLENQYVD 170
>gi|220906794|ref|YP_002482105.1| signal transduction histidine kinase [Cyanothece sp. PCC 7425]
gi|219863405|gb|ACL43744.1| signal transduction histidine kinase [Cyanothece sp. PCC 7425]
Length = 1560
Score = 39.3 bits (90), Expect = 1.0, Method: Composition-based stats.
Identities = 36/174 (20%), Positives = 57/174 (32%), Gaps = 30/174 (17%)
Query: 103 IESIVKDAVILTKNVNSLPLQFTVDIALSTTVQLRGSLLQMFSQSKG----KVDISRRKK 158
++ + I N ++ +L VQ R + LQM + + D+S +
Sbjct: 975 LQQLANQVGIAIYQANLYQQVQQLNQSLEEQVQERTAQLQMALSATSMGTWEWDLSNNVE 1034
Query: 159 VMYKQNIGLMIMP-------FAWDGYWL--ASRGKVADSQVHRPKYLEYSHYYQQYLNRN 209
+Q+ GLM F DG + + S VH P LEY Q R
Sbjct: 1035 RWSEQSYGLMGYQVDQQGNIFDLDGQAVNTPPSHNLFLSHVH-PDDLEYLERVQTQSLRE 1093
Query: 210 TLVKNFLSQIPYKNFCMAPYHYKSIFYWAFENFQYHQDNNMLIFYSHRDFYRIT 263
AP+ Y+ F W+ + + IF +H R
Sbjct: 1094 Q----------------APFEYEFRFVWSDGSIHWCYTRGAYIFDAHGQPLRAV 1131
>gi|326674126|ref|XP_003200076.1| PREDICTED: integrin alpha-E-like [Danio rerio]
Length = 940
Score = 38.9 bits (89), Expect = 1.4, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 12/88 (13%)
Query: 318 SSVGKETIDRILQDCYYMHKHH-------RTGRGAITIFSVGFS----PDQDTRYTLRQC 366
S E I +L D + +T +T +S+G ++D + Q
Sbjct: 273 SKNNSEKIIIVLSDGKILGDPMTLDEVLNKTQMKGVTRYSIGVGDGILKNKDAIKEMTQI 332
Query: 367 ASDPSKYYEINSDENVMPIAKSLARNVI 394
A DP KYY ++S + I SL R +I
Sbjct: 333 A-DPGKYYSVSSYGALNDILSSLERGII 359
>gi|150866507|ref|XP_001386136.2| putative transcription factor [Scheffersomyces stipitis CBS 6054]
gi|149387763|gb|ABN68107.2| putative transcription factor [Scheffersomyces stipitis CBS 6054]
Length = 649
Score = 37.8 bits (86), Expect = 3.1, Method: Composition-based stats.
Identities = 47/293 (16%), Positives = 104/293 (35%), Gaps = 44/293 (15%)
Query: 57 LDHVIYRTSPKNLYDLREAGRDNFIRHQIEKALNTYNSRDLSNIGSIESIVKDAVILTKN 116
L+ + + + +E DN IR +I K +N ++ L N+G + N
Sbjct: 290 LEFINEFSHKTKMNISQEVNLDNLIRERIYKFININSNYWLINLG----------LSNNN 339
Query: 117 VNSLPLQFTVDIALSTTVQLRGSLLQMFSQSKGKVDISRRKKVMYKQNIGLMIMPFAWDG 176
N + ++ + + + + S + S K+ + + K +N+ ++I
Sbjct: 340 YNGFTQDYIINKSSNIDILNKTSEGDHYINSLLKISMIQSK---LNENMNILI------- 389
Query: 177 YWLASRGKVADSQVHRPKYLEYSHYYQQYLNRNTLVKNFLSQI---PYKNFCMAPYHYKS 233
G ++S P L S N ++ + L++I + + S
Sbjct: 390 ------GNNSESVSLLPNQLNTSKLIN--FNMFEIIIDDLNKILVRDDNSLVLNNLIKIS 441
Query: 234 IFYWAFENFQYHQDNNMLIFYSHRDFYRITWDHFPYSFIKNVFDMTSNQFGDGQVLTNTN 293
I + + F Y + + ++ H+ +K+ F + S+QF D + N
Sbjct: 442 IEFSKLQLFVYSLSKSDITILEYK--------HYITKVLKSCFIIFSSQFQDNSLNFNQL 493
Query: 294 HCFPHGASHSKYMLMF-----AIGNQLSRSSVGKETIDRILQDCYYMHKHHRT 341
++M I N +S + KE +++ + K++
Sbjct: 494 PIHYKFPIELAMLIMLRVFKSPIMNSISDYKLVKEKFNQMYDNIIMGGKNNED 546
>gi|326679371|ref|XP_690846.5| PREDICTED: interferon-induced very large GTPase 1 [Danio rerio]
Length = 1700
Score = 37.8 bits (86), Expect = 3.5, Method: Composition-based stats.
Identities = 31/167 (18%), Positives = 68/167 (40%), Gaps = 19/167 (11%)
Query: 46 VMQKTALLQEVLDHVIYRTSPKNLYDLREAGRDNFIRHQIEKALNTYNSRDL--SNIGSI 103
+++ A Q+ +IY T+P+ + NFIR ++ + + +++ S
Sbjct: 1403 ILKTLAEKQDFRAFIIYITNPREHF-------KNFIRDEVNQFVTKTFEKNVRPKMENST 1455
Query: 104 ESIVKDAVILTKNVNSLPLQFTVDIAL---STTVQLRGSLLQMFSQ----SKGKVDISRR 156
+ + + + + + ++ L T QL G L+ S ++G ++S
Sbjct: 1456 KVLEQQITNAARESSKYVKETDGNVGLWLRHFTQQLSGVLIFSESDLIGVNQGDANVSFL 1515
Query: 157 KKVMYKQNIGLMIMPFAWDGYWLASRGKVADSQVHRPKYLEYSHYYQ 203
+ V+ K+ L + F + + +V Q HRP + H+ Q
Sbjct: 1516 EDVIKKE---LPSIKFDIFSKFRPEKFQVKLEQAHRPDEILIDHFCQ 1559
>gi|222149754|ref|YP_002550711.1| hypothetical protein Avi_3756 [Agrobacterium vitis S4]
gi|221736736|gb|ACM37699.1| conserved hypothetical protein [Agrobacterium vitis S4]
Length = 437
Score = 37.4 bits (85), Expect = 4.6, Method: Composition-based stats.
Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 2/126 (1%)
Query: 13 RLKKCTRGVFLVITAILLSSFVAIVDVVVDQVTVMQKTALLQEVLDHVIYRTSPKNLYDL 72
RL + + G F ++TA+LL + + + +D ++Q + LQ +D + +
Sbjct: 41 RLLRHSGGNFGMMTAVLLPVSIGVAGLAMDATEMVQSRSALQSSVDAAALAAASAMSNGM 100
Query: 73 REAGRDNFIRHQIEKALNTYNSRD--LSNIGSIESIVKDAVILTKNVNSLPLQFTVDIAL 130
EA + + L +RD S++ I D + T VNS + V++
Sbjct: 101 SEADAIALAKSFLSSQLANTMARDENTSSVDQITQAEPDISVKTTQVNSSSTSYDVELTG 160
Query: 131 STTVQL 136
S T+ +
Sbjct: 161 SYTITM 166
>gi|328713142|ref|XP_001951374.2| PREDICTED: nipped-B-like protein [Acyrthosiphon pisum]
Length = 1920
Score = 37.4 bits (85), Expect = 4.6, Method: Composition-based stats.
Identities = 35/191 (18%), Positives = 62/191 (32%), Gaps = 11/191 (5%)
Query: 213 KNFLSQIPYKNFCMAPYHYKSIFYWAFENFQYHQDNNMLIFYSHRDFYRITWDHFPYSFI 272
+ FLSQ+ + H +++ +N F RD + I Y ++
Sbjct: 1247 EIFLSQLEEDAVKLIMKHDQTVILSCISCLGSVVNNVTRNFKLIRDCFGIY-----YKYL 1301
Query: 273 KNVFDMTSNQFGDGQVLTNTNHCFPHGASHSKYMLMFAIGNQLSRSSVGKETIDRILQDC 332
N + ++ + Q L F ML F + V + ++D
Sbjct: 1302 SNFQKLHQDRQTNPQGLIPLRPIFRRSIYIIGLMLRFF---DFTDKDVYGDAYPENIRDL 1358
Query: 333 YY--MHKHHRTGRGAITIFSV-GFSPDQDTRYTLRQCASDPSKYYEINSDENVMPIAKSL 389
Y M T +F++ Y C + Y +I S+ +V I KS
Sbjct: 1359 VYDIMSYFMHTNEDDTKLFALKAIGSICIRHYDFMLCQDLMNTYLDILSNNSVPNIMKSQ 1418
Query: 390 ARNVITNWFSQ 400
N I + +
Sbjct: 1419 ILNNIEIYLEE 1429
>gi|193700169|ref|XP_001949866.1| PREDICTED: protein singed-like [Acyrthosiphon pisum]
Length = 520
Score = 37.0 bits (84), Expect = 6.0, Method: Composition-based stats.
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 295 CFPHGASHSKYMLM-FAIGNQLSRSSVGKETIDRILQDCYYMHKHHRTGRGAITIFSVGF 353
C A S+ L+ A Q++ SVG++ + ++ +H G T+F++
Sbjct: 142 CTAKAAGSSELWLVHLAARPQVNLRSVGRKRFAHLSENLDEIHVDANIPWGEDTLFTLEL 201
Query: 354 SPDQDTRYTLRQC 366
PD D +Y + C
Sbjct: 202 RPDDDFKYAIHTC 214
>gi|312902635|ref|ZP_07761840.1| conserved domain protein [Enterococcus faecalis TX0635]
gi|310633973|gb|EFQ17256.1| conserved domain protein [Enterococcus faecalis TX0635]
Length = 361
Score = 37.0 bits (84), Expect = 6.1, Method: Composition-based stats.
Identities = 27/136 (19%), Positives = 49/136 (36%), Gaps = 15/136 (11%)
Query: 42 DQVTVMQKTALLQEVLDHVIYRTSPKNLYDLREAGRDNFIRHQIEKALNTYNSRDLSNIG 101
D T+ +L + V++ DL E R I+ +I + Y + +
Sbjct: 111 DLDTMFVAQEMLYNEVGAVVHSNG-----DLTEEQR-MTIKKKINDVIANYEKQPSFHNS 164
Query: 102 SIESIVKDAVILTKNVNSLPLQFTVDIALSTTVQLRGSLLQMFSQSKGKVDISRR---KK 158
++ + ++ +LT S QF V + V R S ++ K + S KK
Sbjct: 165 KVKLTLGESTVLTDTNGSNLSQFDVVAQNTANVDFRQSGNKLTITPKSTANSSGTLILKK 224
Query: 159 VMYKQNIGLMIMPFAW 174
+ + PF W
Sbjct: 225 SLREGT------PFIW 234
>gi|15891094|ref|NP_356766.1| hypothetical protein Atu3868 [Agrobacterium tumefaciens str. C58]
gi|15159433|gb|AAK89551.1| hypothetical protein Atu3868 [Agrobacterium tumefaciens str. C58]
Length = 412
Score = 36.6 bits (83), Expect = 7.5, Method: Composition-based stats.
Identities = 31/130 (23%), Positives = 48/130 (36%), Gaps = 15/130 (11%)
Query: 18 TRGVFLVITAILLSSFVAIVDVVVDQVTVMQKTALLQEV------LDHVIYRTSPKNLYD 71
T G F ++TAILL + + ++ VMQ A +Q R L D
Sbjct: 17 TSGNFGMMTAILLPVLLGVAGAGMELANVMQVKADMQNTADSAALAAATEARLREGKLSD 76
Query: 72 LREAG-RDNFIRHQIEKALNTYNSRDLSNIGSIESIVKDAVILTKNVNSLPLQFTVDIAL 130
+ NFI Q+EK +L+ IE +T N+ + V+ +
Sbjct: 77 EQIKEIAKNFIAAQMEK--------NLTAEEKIELEKNSPTRVTTTENARGKTYAVETTI 128
Query: 131 STTVQLRGSL 140
+QL L
Sbjct: 129 KHQIQLNPML 138
>gi|197105075|ref|YP_002130452.1| hypothetical protein PHZ_c1612 [Phenylobacterium zucineum HLK1]
gi|196478495|gb|ACG78023.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1]
Length = 521
Score = 36.6 bits (83), Expect = 8.0, Method: Composition-based stats.
Identities = 14/85 (16%), Positives = 34/85 (40%)
Query: 311 IGNQLSRSSVGKETIDRILQDCYYMHKHHRTGRGAITIFSVGFSPDQDTRYTLRQCASDP 370
G ++ SS +E + + + + I I+++ + L+ CAS
Sbjct: 432 AGRPITESSSQRERTAALDDRLLKLCANMKAPAKDIEIYAIRVEVSSGSSSVLQTCASSA 491
Query: 371 SKYYEINSDENVMPIAKSLARNVIT 395
YY++ + ++ +S+A +
Sbjct: 492 DHYYDVQNAADMTMAFQSIAGQIAA 516
Database: nr
Posted date: May 13, 2011 4:10 AM
Number of letters in database: 999,999,932
Number of sequences in database: 2,987,209
Database: /data/usr2/db/fasta/nr.01
Posted date: May 13, 2011 4:17 AM
Number of letters in database: 999,998,956
Number of sequences in database: 2,896,973
Database: /data/usr2/db/fasta/nr.02
Posted date: May 13, 2011 4:23 AM
Number of letters in database: 999,999,979
Number of sequences in database: 2,907,862
Database: /data/usr2/db/fasta/nr.03
Posted date: May 13, 2011 4:29 AM
Number of letters in database: 999,999,513
Number of sequences in database: 2,932,190
Database: /data/usr2/db/fasta/nr.04
Posted date: May 13, 2011 4:33 AM
Number of letters in database: 792,586,372
Number of sequences in database: 2,260,650
Lambda K H
0.313 0.132 0.370
Lambda K H
0.267 0.0406 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,827,481,504
Number of Sequences: 13984884
Number of extensions: 261266016
Number of successful extensions: 944976
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 944923
Number of HSP's gapped (non-prelim): 80
length of query: 408
length of database: 4,792,584,752
effective HSP length: 141
effective length of query: 267
effective length of database: 2,820,716,108
effective search space: 753131200836
effective search space used: 753131200836
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.0 bits)
S2: 82 (36.2 bits)