RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780135|ref|YP_003064548.1| hypothetical protein
CLIBASIA_00070 [Candidatus Liberibacter asiaticus str. psy62]
         (408 letters)



>gnl|CDD|35313 KOG0090, KOG0090, KOG0090, Signal recognition particle receptor,
           beta subunit (small G protein superfamily)
           [Intracellular trafficking, secretion, and vesicular
           transport].
          Length = 238

 Score = 29.5 bits (66), Expect = 1.6
 Identities = 23/93 (24%), Positives = 35/93 (37%), Gaps = 11/93 (11%)

Query: 31  SSFVAIVDVVVDQVTVMQKTALLQEVLDHVIYRTSPK----------NLYDLREAGRDNF 80
           +     +  VVD  T ++    + E L  ++  +  K          N  DL  A     
Sbjct: 106 NYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEK 165

Query: 81  IRHQIEKALNTYN-SRDLSNIGSIESIVKDAVI 112
           IR Q+EK ++    SR      S E I KD  +
Sbjct: 166 IRQQLEKEIHKLRESRSALRSISDEDIAKDFTL 198


>gnl|CDD|112806 pfam04007, DUF354, Protein of unknown function (DUF354).  Members
           of this family are around 350 amino acids in length.
           They are found in archaebacteria and have no known
           function.
          Length = 335

 Score = 27.8 bits (62), Expect = 4.8
 Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 15/91 (16%)

Query: 40  VVDQVTVMQKTALLQEVLDHVIYRTSPKNLYDLREAGRDNFIRHQIEKALNTYNSRDLSN 99
           V+D    +    L   + D+++      +   LR  G DN IR        TY    +  
Sbjct: 109 VLDNEHALAANKLTFPLADYILV-PEIIDDEFLRFFGADNRIR--------TYPG--IKE 157

Query: 100 IGSIESIVKDAVILTKNVNSLPLQFTVDIAL 130
           I +I   V D  IL K    L L+F   I +
Sbjct: 158 IANISDYVPDPEILKK----LGLEFEEYIVM 184


>gnl|CDD|35549 KOG0328, KOG0328, KOG0328, Predicted ATP-dependent RNA helicase
           FAL1, involved in rRNA maturation, DEAD-box superfamily
           [Translation, ribosomal structure and biogenesis].
          Length = 400

 Score = 27.2 bits (60), Expect = 8.7
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 5/56 (8%)

Query: 334 YMHKHHRTGRGAITIFSVGFSPDQDTRYTLRQCASDPSKYYEINSDENVMPIAKSL 389
           Y+H+  R+GR      ++ F    D R  LR    D  +YY    DE  M +A  +
Sbjct: 350 YIHRIGRSGRFGRKGVAINFVKSDDLR-ILR----DIEQYYSTQIDEMPMNVADLI 400


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.324    0.136    0.411 

Gapped
Lambda     K      H
   0.267   0.0651    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 4,947,321
Number of extensions: 264862
Number of successful extensions: 739
Number of sequences better than 10.0: 1
Number of HSP's gapped: 738
Number of HSP's successfully gapped: 6
Length of query: 408
Length of database: 6,263,737
Length adjustment: 96
Effective length of query: 312
Effective length of database: 4,189,273
Effective search space: 1307053176
Effective search space used: 1307053176
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (26.7 bits)