RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780135|ref|YP_003064548.1| hypothetical protein CLIBASIA_00070 [Candidatus Liberibacter asiaticus str. psy62] (408 letters) >gnl|CDD|185327 PRK15429, PRK15429, formate hydrogenlyase transcriptional activator FhlA; Provisional. Length = 686 Score = 31.7 bits (72), Expect = 0.39 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 2/59 (3%) Query: 1 MFQNKNFLLGVLRLKKCTRGVFLVITAILLSSFVAIVDVVVDQVTVMQKTALLQEVLDH 59 M + +LGVL+L +C VF LL V + VD Q+ L+E L Sbjct: 303 MSGDT--MLGVLKLAQCEEKVFTTTNLKLLRQIAERVAIAVDNALAYQEIHRLKERLVD 359 >gnl|CDD|182522 PRK10529, PRK10529, DNA-binding transcriptional activator KdpE; Provisional. Length = 225 Score = 31.3 bits (71), Expect = 0.49 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 5/62 (8%) Query: 150 KVDISRRKKVMYKQNIGLMIMPFAWDGYWLASRGKVAD-----SQVHRPKYLEYSHYYQQ 204 VD++ R ++ + L + F L + GKV +QV P +E+SHY + Sbjct: 135 TVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWGPNAVEHSHYLRI 194 Query: 205 YL 206 Y+ Sbjct: 195 YM 196 >gnl|CDD|180753 PRK06924, PRK06924, short chain dehydrogenase; Provisional. Length = 251 Score = 30.0 bits (68), Expect = 1.1 Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 10/51 (19%) Query: 59 HVIYRTSPKNLYDLREAGRDNFIRHQIEKALNTYNSRDLSNIGSIESIVKD 109 I RT K L L E N H + DL ++ +E+ + Sbjct: 29 ISISRTENKELTKLAEQYNSNLTFHSL----------DLQDVHELETNFNE 69 >gnl|CDD|152291 pfam11855, DUF3375, Protein of unknown function (DUF3375). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 479 to 499 amino acids in length. Length = 471 Score = 28.9 bits (65), Expect = 2.4 Identities = 18/70 (25%), Positives = 25/70 (35%), Gaps = 5/70 (7%) Query: 32 SFVAIVDVVVDQVTVMQKTALLQEVLDH-VIYRTSPKNLYDLREAGRDNFIRHQIEKALN 90 SF A D ++D + LL+ VL P+ LR RD + E+ Sbjct: 238 SFRAFWDFLLDPERQEELDELLRAVLARPPAQGLDPELREFLRRLHRD--LLEAGEEVQR 295 Query: 91 TYN--SRDLS 98 T S L Sbjct: 296 TRRRLSESLR 305 >gnl|CDD|185491 PTZ00164, PTZ00164, bifunctional dihydrofolate reductase-thymidylate synthase; Provisional. Length = 514 Score = 27.7 bits (62), Expect = 5.9 Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 8/43 (18%) Query: 323 ETIDRILQDCYYMHKHHRTGRGAITIFSVGFSPDQDTRYTLRQ 365 + I I+++ K RTG G I+ F R+ LR+ Sbjct: 236 DLIADIIKNGN--VKEDRTGVGTISKFG------YQMRFDLRE 270 >gnl|CDD|184793 PRK14696, tynA, tyramine oxidase; Provisional. Length = 721 Score = 27.1 bits (60), Expect = 7.5 Identities = 9/21 (42%), Positives = 16/21 (76%) Query: 152 DISRRKKVMYKQNIGLMIMPF 172 D ++KVMY+ ++G MI+P+ Sbjct: 343 DNGTKRKVMYEGSLGGMIVPY 363 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.324 0.136 0.411 Gapped Lambda K H 0.267 0.0709 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 6,524,566 Number of extensions: 409508 Number of successful extensions: 1000 Number of sequences better than 10.0: 1 Number of HSP's gapped: 999 Number of HSP's successfully gapped: 16 Length of query: 408 Length of database: 5,994,473 Length adjustment: 96 Effective length of query: 312 Effective length of database: 3,920,105 Effective search space: 1223072760 Effective search space used: 1223072760 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 58 (26.2 bits)