RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780135|ref|YP_003064548.1| hypothetical protein
CLIBASIA_00070 [Candidatus Liberibacter asiaticus str. psy62]
         (408 letters)



>gnl|CDD|185327 PRK15429, PRK15429, formate hydrogenlyase transcriptional activator
           FhlA; Provisional.
          Length = 686

 Score = 31.7 bits (72), Expect = 0.39
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 1   MFQNKNFLLGVLRLKKCTRGVFLVITAILLSSFVAIVDVVVDQVTVMQKTALLQEVLDH 59
           M  +   +LGVL+L +C   VF      LL      V + VD     Q+   L+E L  
Sbjct: 303 MSGDT--MLGVLKLAQCEEKVFTTTNLKLLRQIAERVAIAVDNALAYQEIHRLKERLVD 359


>gnl|CDD|182522 PRK10529, PRK10529, DNA-binding transcriptional activator KdpE;
           Provisional.
          Length = 225

 Score = 31.3 bits (71), Expect = 0.49
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 5/62 (8%)

Query: 150 KVDISRRKKVMYKQNIGLMIMPFAWDGYWLASRGKVAD-----SQVHRPKYLEYSHYYQQ 204
            VD++ R     ++ + L  + F      L + GKV       +QV  P  +E+SHY + 
Sbjct: 135 TVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWGPNAVEHSHYLRI 194

Query: 205 YL 206
           Y+
Sbjct: 195 YM 196


>gnl|CDD|180753 PRK06924, PRK06924, short chain dehydrogenase; Provisional.
          Length = 251

 Score = 30.0 bits (68), Expect = 1.1
 Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 10/51 (19%)

Query: 59  HVIYRTSPKNLYDLREAGRDNFIRHQIEKALNTYNSRDLSNIGSIESIVKD 109
             I RT  K L  L E    N   H +          DL ++  +E+   +
Sbjct: 29  ISISRTENKELTKLAEQYNSNLTFHSL----------DLQDVHELETNFNE 69


>gnl|CDD|152291 pfam11855, DUF3375, Protein of unknown function (DUF3375).  This
           family of proteins are functionally uncharacterized.
           This protein is found in bacteria. Proteins in this
           family are typically between 479 to 499 amino acids in
           length.
          Length = 471

 Score = 28.9 bits (65), Expect = 2.4
 Identities = 18/70 (25%), Positives = 25/70 (35%), Gaps = 5/70 (7%)

Query: 32  SFVAIVDVVVDQVTVMQKTALLQEVLDH-VIYRTSPKNLYDLREAGRDNFIRHQIEKALN 90
           SF A  D ++D     +   LL+ VL         P+    LR   RD  +    E+   
Sbjct: 238 SFRAFWDFLLDPERQEELDELLRAVLARPPAQGLDPELREFLRRLHRD--LLEAGEEVQR 295

Query: 91  TYN--SRDLS 98
           T    S  L 
Sbjct: 296 TRRRLSESLR 305


>gnl|CDD|185491 PTZ00164, PTZ00164, bifunctional dihydrofolate
           reductase-thymidylate synthase; Provisional.
          Length = 514

 Score = 27.7 bits (62), Expect = 5.9
 Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 8/43 (18%)

Query: 323 ETIDRILQDCYYMHKHHRTGRGAITIFSVGFSPDQDTRYTLRQ 365
           + I  I+++     K  RTG G I+ F          R+ LR+
Sbjct: 236 DLIADIIKNGN--VKEDRTGVGTISKFG------YQMRFDLRE 270


>gnl|CDD|184793 PRK14696, tynA, tyramine oxidase; Provisional.
          Length = 721

 Score = 27.1 bits (60), Expect = 7.5
 Identities = 9/21 (42%), Positives = 16/21 (76%)

Query: 152 DISRRKKVMYKQNIGLMIMPF 172
           D   ++KVMY+ ++G MI+P+
Sbjct: 343 DNGTKRKVMYEGSLGGMIVPY 363


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.324    0.136    0.411 

Gapped
Lambda     K      H
   0.267   0.0709    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 6,524,566
Number of extensions: 409508
Number of successful extensions: 1000
Number of sequences better than 10.0: 1
Number of HSP's gapped: 999
Number of HSP's successfully gapped: 16
Length of query: 408
Length of database: 5,994,473
Length adjustment: 96
Effective length of query: 312
Effective length of database: 3,920,105
Effective search space: 1223072760
Effective search space used: 1223072760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.2 bits)