RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780135|ref|YP_003064548.1| hypothetical protein CLIBASIA_00070 [Candidatus Liberibacter asiaticus str. psy62] (408 letters) >d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} Length = 120 Score = 28.5 bits (63), Expect = 1.1 Identities = 15/72 (20%), Positives = 29/72 (40%) Query: 174 WDGYWLASRGKVADSQVHRPKYLEYSHYYQQYLNRNTLVKNFLSQIPYKNFCMAPYHYKS 233 + S GK + + Y Q++ ++ TL + S Y + + Sbjct: 33 LLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELVRLTSNDSA 92 Query: 234 IFYWAFENFQYH 245 ++Y A E+F+YH Sbjct: 93 VYYCAREDFRYH 104 >d1fsua_ c.76.1.2 (A:) Arylsulfatase B (4-sulfatase) {Human (Homo sapiens) [TaxId: 9606]} Length = 492 Score = 28.2 bits (61), Expect = 1.2 Identities = 17/190 (8%), Positives = 35/190 (18%), Gaps = 6/190 (3%) Query: 160 MYKQNIGLMIMPFAWDGYWLASRGKVADSQVHRPKYLEYSHYYQQYLNRNTLVK--NFLS 217 + L F D G V+ + N + N Sbjct: 204 LQVPEEYLKPYDFIQDKNRHHYAGMVSLMDEAVGNVTAALKSSGLWNNTVFIFSTDNGGQ 263 Query: 218 QIPYKNFCMAPYHYKSIFYWAFENFQYHQDNNMLIFYSHRDFYRITWDHFPYSFIKNVFD 277 + N S++ + + D P Sbjct: 264 TLAGGNNWPLRGRKWSLWEGGVRGVGFVASPLLKQKGVKNRELIHISDWLPTLVKLARGH 323 Query: 278 MTSNQFGDGQ----VLTNTNHCFPHGASHSKYMLMFAIGNQLSRSSVGKETIDRILQDCY 333 + DG ++ + H+ S + + + Sbjct: 324 TNGTKPLDGFDVWKTISEGSPSPRIELLHNIDPNFVDSSPCPRNSMAPAKDDSSLPEYSA 383 Query: 334 YMHKHHRTGR 343 + H R Sbjct: 384 FNTSVHAAIR 393 >d1tywa_ b.80.1.6 (A:) P22 tailspike protein {Salmonella phage P22 [TaxId: 10754]} Length = 554 Score = 26.5 bits (58), Expect = 4.6 Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 1/43 (2%) Query: 174 WDGYWLASRGKVADSQVHRPKYLEYSHYYQQYLNRNTLVKNFL 216 WDG+ L + + ++ RP + Y L N L+ N L Sbjct: 279 WDGFDLGADTDMN-PELDRPGDYPITQYPLHQLPLNHLIDNLL 320 >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} Length = 267 Score = 25.7 bits (56), Expect = 6.5 Identities = 7/48 (14%), Positives = 15/48 (31%) Query: 194 KYLEYSHYYQQYLNRNTLVKNFLSQIPYKNFCMAPYHYKSIFYWAFEN 241 + +QQ L ++ + + K F WA ++ Sbjct: 206 DGNSTTFEHQQPLQDRMFKFELTRRLDHDFGKVTKQEVKDFFRWAKDH 253 >d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow (Bos taurus) [TaxId: 9913]} Length = 195 Score = 25.6 bits (55), Expect = 7.7 Identities = 10/93 (10%), Positives = 23/93 (24%), Gaps = 3/93 (3%) Query: 227 APYHYKSIFYWAFENFQYHQDNNMLIFYSHRDFYRITWDHFPYSFIKNVFDMTSNQFGDG 286 P ++ + + F+RI + + T + G Sbjct: 40 VPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYG 99 Query: 287 QVLTNTNHCFPHGASHSKYMLMFAIGNQLSRSS 319 + + H + +L A + S Sbjct: 100 EKFED---ENFHYKHDKEGLLSMANAGSNTNGS 129 >d1vyba_ d.151.1.1 (A:) Endonuclease domain of LINE-1 reverse transcriptase homolog {Human (Homo sapiens) [TaxId: 9606]} Length = 236 Score = 25.5 bits (54), Expect = 8.1 Identities = 14/163 (8%), Positives = 39/163 (23%), Gaps = 10/163 (6%) Query: 167 LMIMPFAWDGYWLASRGKVADSQVHRPKYLEYSHYYQQYLNRNTLVKNFLSQIPYKNFCM 226 + + + VA + + + + + + + Sbjct: 54 IKGWRKIYQANGKQKKAGVAILVSDKTDFKPTKIKRDKEGHYIMVKGSIQQEELTILNIY 113 Query: 227 APYHYKSIFYWAFENFQYHQDNNMLIFYSHRDFYRITWDHFPYSFIKNVFDMTSNQFGDG 286 AP F + ++ + + T D + ++ Sbjct: 114 APNTGAPRFIKQVLSDLQRDLDSHTLIMGDFNTPLSTLDRSTRQKVNKDTQELNSALHQA 173 Query: 287 QVLTNTNHCFPHGASHSKYMLMFAIGNQLSRSSVGKETIDRIL 329 ++ P ++Y A + S+ ID I+ Sbjct: 174 DLIDIYRTLHPKS---TEYTFFSAPHHTYSK-------IDHIV 206 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.324 0.136 0.411 Gapped Lambda K H 0.267 0.0440 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 1,531,212 Number of extensions: 70733 Number of successful extensions: 230 Number of sequences better than 10.0: 1 Number of HSP's gapped: 230 Number of HSP's successfully gapped: 18 Length of query: 408 Length of database: 2,407,596 Length adjustment: 87 Effective length of query: 321 Effective length of database: 1,213,086 Effective search space: 389400606 Effective search space used: 389400606 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 54 (25.3 bits)