RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780135|ref|YP_003064548.1| hypothetical protein
CLIBASIA_00070 [Candidatus Liberibacter asiaticus str. psy62]
         (408 letters)



>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable
           domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId:
           10090]}
          Length = 120

 Score = 28.5 bits (63), Expect = 1.1
 Identities = 15/72 (20%), Positives = 29/72 (40%)

Query: 174 WDGYWLASRGKVADSQVHRPKYLEYSHYYQQYLNRNTLVKNFLSQIPYKNFCMAPYHYKS 233
              +   S GK  +       +     Y Q++ ++ TL  +  S   Y        +  +
Sbjct: 33  LLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELVRLTSNDSA 92

Query: 234 IFYWAFENFQYH 245
           ++Y A E+F+YH
Sbjct: 93  VYYCAREDFRYH 104


>d1fsua_ c.76.1.2 (A:) Arylsulfatase B (4-sulfatase) {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 492

 Score = 28.2 bits (61), Expect = 1.2
 Identities = 17/190 (8%), Positives = 35/190 (18%), Gaps = 6/190 (3%)

Query: 160 MYKQNIGLMIMPFAWDGYWLASRGKVADSQVHRPKYLEYSHYYQQYLNRNTLVK--NFLS 217
           +      L    F  D       G V+                  + N   +    N   
Sbjct: 204 LQVPEEYLKPYDFIQDKNRHHYAGMVSLMDEAVGNVTAALKSSGLWNNTVFIFSTDNGGQ 263

Query: 218 QIPYKNFCMAPYHYKSIFYWAFENFQYHQDNNMLIFYSHRDFYRITWDHFPYSFIKNVFD 277
            +   N         S++        +     +              D  P         
Sbjct: 264 TLAGGNNWPLRGRKWSLWEGGVRGVGFVASPLLKQKGVKNRELIHISDWLPTLVKLARGH 323

Query: 278 MTSNQFGDGQ----VLTNTNHCFPHGASHSKYMLMFAIGNQLSRSSVGKETIDRILQDCY 333
               +  DG      ++  +        H+              S    +    + +   
Sbjct: 324 TNGTKPLDGFDVWKTISEGSPSPRIELLHNIDPNFVDSSPCPRNSMAPAKDDSSLPEYSA 383

Query: 334 YMHKHHRTGR 343
           +    H   R
Sbjct: 384 FNTSVHAAIR 393


>d1tywa_ b.80.1.6 (A:) P22 tailspike protein {Salmonella phage P22
           [TaxId: 10754]}
          Length = 554

 Score = 26.5 bits (58), Expect = 4.6
 Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 174 WDGYWLASRGKVADSQVHRPKYLEYSHYYQQYLNRNTLVKNFL 216
           WDG+ L +   +   ++ RP     + Y    L  N L+ N L
Sbjct: 279 WDGFDLGADTDMN-PELDRPGDYPITQYPLHQLPLNHLIDNLL 320


>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain
           {Adeno-associated virus 2, AAV2 [TaxId: 10804]}
          Length = 267

 Score = 25.7 bits (56), Expect = 6.5
 Identities = 7/48 (14%), Positives = 15/48 (31%)

Query: 194 KYLEYSHYYQQYLNRNTLVKNFLSQIPYKNFCMAPYHYKSIFYWAFEN 241
                +  +QQ L           ++ +    +     K  F WA ++
Sbjct: 206 DGNSTTFEHQQPLQDRMFKFELTRRLDHDFGKVTKQEVKDFFRWAKDH 253


>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow
           (Bos taurus) [TaxId: 9913]}
          Length = 195

 Score = 25.6 bits (55), Expect = 7.7
 Identities = 10/93 (10%), Positives = 23/93 (24%), Gaps = 3/93 (3%)

Query: 227 APYHYKSIFYWAFENFQYHQDNNMLIFYSHRDFYRITWDHFPYSFIKNVFDMTSNQFGDG 286
            P   ++                  + +    F+RI           +  + T  +   G
Sbjct: 40  VPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYG 99

Query: 287 QVLTNTNHCFPHGASHSKYMLMFAIGNQLSRSS 319
           +   +      H     + +L  A     +  S
Sbjct: 100 EKFED---ENFHYKHDKEGLLSMANAGSNTNGS 129


>d1vyba_ d.151.1.1 (A:) Endonuclease domain of LINE-1 reverse
           transcriptase homolog {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 236

 Score = 25.5 bits (54), Expect = 8.1
 Identities = 14/163 (8%), Positives = 39/163 (23%), Gaps = 10/163 (6%)

Query: 167 LMIMPFAWDGYWLASRGKVADSQVHRPKYLEYSHYYQQYLNRNTLVKNFLSQIPYKNFCM 226
           +      +       +  VA     +  +        +  +   +  +   +        
Sbjct: 54  IKGWRKIYQANGKQKKAGVAILVSDKTDFKPTKIKRDKEGHYIMVKGSIQQEELTILNIY 113

Query: 227 APYHYKSIFYWAFENFQYHQDNNMLIFYSHRDFYRITWDHFPYSFIKNVFDMTSNQFGDG 286
           AP      F     +      ++  +     +    T D      +       ++     
Sbjct: 114 APNTGAPRFIKQVLSDLQRDLDSHTLIMGDFNTPLSTLDRSTRQKVNKDTQELNSALHQA 173

Query: 287 QVLTNTNHCFPHGASHSKYMLMFAIGNQLSRSSVGKETIDRIL 329
            ++       P     ++Y    A  +  S+       ID I+
Sbjct: 174 DLIDIYRTLHPKS---TEYTFFSAPHHTYSK-------IDHIV 206


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.136    0.411 

Gapped
Lambda     K      H
   0.267   0.0440    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,531,212
Number of extensions: 70733
Number of successful extensions: 230
Number of sequences better than 10.0: 1
Number of HSP's gapped: 230
Number of HSP's successfully gapped: 18
Length of query: 408
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 321
Effective length of database: 1,213,086
Effective search space: 389400606
Effective search space used: 389400606
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.3 bits)