Query gi|254780136|ref|YP_003064549.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 125
No_of_seqs 106 out of 1338
Neff 7.1
Searched_HMMs 33803
Date Sun May 22 09:04:39 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780136.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2rcc_A Ribonucleoside-diphosp 100.0 2.7E-35 7.9E-40 235.0 11.0 125 1-125 68-195 (197)
2 >1syy_A Ribonucleoside-diphosp 100.0 1.9E-33 5.6E-38 223.8 11.0 123 1-124 224-346 (346)
3 >1r2f_A Protein (ribonucleotid 100.0 1.2E-31 3.7E-36 212.7 11.0 122 1-125 61-186 (191)
4 >3dhz_A Ribonucleotide reducta 100.0 1E-31 3E-36 213.3 10.4 122 1-125 61-186 (191)
5 >1jk0_A RNR Y2, ribonucleoside 100.0 2.1E-31 6.2E-36 211.3 7.1 114 1-123 166-279 (295)
6 >2p1i_A Ribonucleotide reducta 100.0 1.9E-31 5.7E-36 211.6 6.8 114 1-123 62-175 (188)
7 >1h0o_A Ribonucleoside-diphosp 100.0 3.9E-31 1.2E-35 209.7 7.5 114 1-123 46-159 (172)
8 >1jk0_B RNR Y4, ribonucleoside 100.0 1.4E-31 4.2E-36 212.4 5.2 114 1-123 71-184 (199)
9 >1mxr_A Ribonucleotide reducta 100.0 1.6E-30 4.8E-35 206.0 9.9 125 1-125 235-366 (375)
10 >3ee4_A Probable ribonucleosid 99.9 2.1E-25 6.3E-30 174.9 9.1 116 1-121 208-323 (323)
11 >2o1z_A Ribonucleotide reducta 99.9 3E-24 8.8E-29 167.9 5.6 89 1-97 62-150 (151)
12 >3chh_A P-aminobenzoate N-oxyg 98.8 2.6E-09 7.7E-14 77.0 2.3 102 1-111 224-327 (336)
13 >2oc5_A Hypothetical protein; 93.0 0.71 2.1E-05 25.8 7.9 75 1-83 155-230 (244)
14 >1za0_A Possible acyl-[acyl-ca 58.3 14 0.00042 17.9 4.6 78 2-86 187-267 (275)
15 >2uw1_A Desaturase, plastid de 50.8 19 0.00055 17.1 4.4 23 2-24 47-69 (166)
16 >3ge3_A Toluene-4-monooxygenas 38.5 29 0.00086 16.0 7.0 81 2-85 229-314 (374)
17 >1otk_A Protein PAAC, phenylac 28.5 43 0.0013 15.0 6.4 76 1-85 47-131 (138)
18 >3b81_A Transcriptional regula 25.7 48 0.0014 14.7 5.1 47 39-85 71-117 (123)
19 >1b0n_B Protein (SINI protein) 24.5 17 0.00051 17.4 -0.1 29 43-71 10-38 (57)
No 1
>>2rcc_A Ribonucleoside-diphosphate reductase subunit beta; NP_241368.1, putative class I ribonucleotide reductase, ribonucleotide reductase; HET: MSE PGE PG4; 1.90A {Bacillus halodurans c-125} (A:150-346)
Probab=100.00 E-value=2.7e-35 Score=235.04 Aligned_cols=125 Identities=29% Similarity=0.491 Sum_probs=117.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 94037899999999999996770003112299999999999999999857630876018899999999999999999985
Q gi|254780136|r 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 80 (125)
Q Consensus 1 ~RDE~lH~~~~~~l~~~l~~e~pe~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yiky~an~rL~~l 80 (125)
.|||++|+.+++.+|+++++|+|+.++++++++|++|+++||++|++|++++++.+++|++++.+++||+|+||+||++|
T Consensus 68 ~RDE~~H~~~~~~l~~~l~~e~~~~~~~~~~~~i~~l~~eave~E~~~~~~~~~~~~~g~~~~~~~~yiky~an~~L~~l 147 (197)
T 2rcc_A 68 NRDEQLHVYLFTNIFKELLVEFPELNTEETKTFVKTTLXKAADLEKDWFRYIIGDKIPGINPEDXETYISFIANKRAVQL 147 (197)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 74488999889999998754066321001489999999999999999999970676579889999999999999999977
Q ss_pred CCCCCCCC-CCCCHHHHHHHHCCC-CCCCCCCCCHHHHHHHCCC-CCC
Q ss_conf 97878898-788868999983466-5732131003333430657-789
Q gi|254780136|r 81 GLEPLFKY-TENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAEL-KWD 125 (125)
Q Consensus 81 Gl~~~f~~-~~nPl~W~~~~~~~~-~~~nFFE~r~t~Y~k~~~~-~~D 125 (125)
|++|+|++ .+||+|||..+++.. +++||||+|+|+|++|+.. +||
T Consensus 148 G~~~~f~~~~~np~~w~~~~~~~~~~~~nFFe~~~~~Y~~~~~~~~~d 195 (197)
T 2rcc_A 148 GXEKPYPEIKHNPXKWIRAYEDVNSGKSDFFEQKSRQYAKVSADNGFD 195 (197)
T ss_dssp TCCCSCTTCCSCSCTTC-------------------------------
T ss_pred CCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCC
T ss_conf 999899987799588999865347653588888768751066778866
No 2
>>1syy_A Ribonucleoside-diphosphate reductase beta chain; DIIRON, oxygen activation, iron coupled radical, immune evasion, replication; 1.70A {Chlamydia trachomatis} (A:)
Probab=100.00 E-value=1.9e-33 Score=223.79 Aligned_cols=123 Identities=57% Similarity=1.023 Sum_probs=120.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 94037899999999999996770003112299999999999999999857630876018899999999999999999985
Q gi|254780136|r 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 80 (125)
Q Consensus 1 ~RDE~lH~~~~~~l~~~l~~e~pe~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yiky~an~rL~~l 80 (125)
+|||++|+.||+.+++.++.|.|+.+++++++.+++++.+||++|.+|++++++.+++|++++.+++|++|+||+||.+|
T Consensus 224 ~RDE~~H~~f~~~l~~~~~~e~~~~~~~~~~~~v~~l~~eav~~E~~~~~~~~~~~~~g~~~~~~~~yv~~~an~~L~~l 303 (346)
T 1syy_A 224 LRDETIHLNFGIDLINGIKEENPEIWTPELQQEIVELIKRAVDLEIEYAQDCLPRGILGLRASMFIDYVQHIADRRLERI 303 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCBTTBCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 52156788899999999865009875213899999999999999999999966788789899999999999999999977
Q ss_pred CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCC
Q ss_conf 97878898788868999983466573213100333343065778
Q gi|254780136|r 81 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 124 (125)
Q Consensus 81 Gl~~~f~~~~nPl~W~~~~~~~~~~~nFFE~r~t~Y~k~~~~~~ 124 (125)
|++|+|++ +||+||+...+++.+++||||+|+|+|+||++++|
T Consensus 304 G~~~~~~~-~np~~w~~~~~~~~~~~nfFe~~~~~Y~~~~~~~w 346 (346)
T 1syy_A 304 GLKPIYHT-KNPFPWMSETIDLNKEKNFFETRVIEYQHAASLTW 346 (346)
T ss_dssp TCCCSSCC-CCSCTTC----------------------------
T ss_pred CCCCCCCC-CCCHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCC
T ss_conf 99998999-99647799873867775778897331365576889
No 3
>>1r2f_A Protein (ribonucleotide reductase R2); nucleotide metabolism, oxidoreductase; 2.10A {Salmonella typhimurium} (A:129-319)
Probab=99.97 E-value=1.2e-31 Score=212.74 Aligned_cols=122 Identities=18% Similarity=0.191 Sum_probs=110.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 94037899999999999996770003112299999999999999999857630876018899999999999999999985
Q gi|254780136|r 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 80 (125)
Q Consensus 1 ~RDE~lH~~~~~~l~~~l~~e~pe~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yiky~an~rL~~l 80 (125)
+|||++|+.+++.++++++.|+|+++++++.++|++|+++||++|.+|++++++ .|++++++++||+|+||+||.+|
T Consensus 61 ~RDE~~H~~~~~~l~~~l~~e~~~~~~~~~~~~i~~l~~~ave~E~~~~~~~~~---~g~~~e~~~~yi~y~an~rl~~l 137 (191)
T 1r2f_A 61 IRDEAVHGYYIGYKYQIALQKLSAIEREELKLFALDLLMELYDNEIRYTEALYA---ETGWVNDVKAFLCYNANKALMNL 137 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---TTSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 988989999999999999985448888789999999999999999999998743---35769999999999999999977
Q ss_pred CCCCCCCCC-CC--CHHHHHHHHCCCCCCCCCCCCHHHHHHHCCC-CCC
Q ss_conf 978788987-88--8689999834665732131003333430657-789
Q gi|254780136|r 81 GLEPLFKYT-EN--PFPWMSEVIDLKKEKNFFETRVTEYQQGAEL-KWD 125 (125)
Q Consensus 81 Gl~~~f~~~-~n--Pl~W~~~~~~~~~~~nFFE~r~t~Y~k~~~~-~~D 125 (125)
|++|+|++. +| |++|+...+++.+++||||+|+|+|+||+.. +||
T Consensus 138 G~~~~f~~~~~~~~p~~~~~~~~~~~~~~nFFe~r~t~Y~k~~~~~~~d 186 (191)
T 1r2f_A 138 GYEALFPPEMADVNPAILAALSPNADENHDFFSGSGSSYVMGKTVETED 186 (191)
T ss_dssp TCCCCSCTTTSCCCHHHHHHHCC--------------------------
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCCC
T ss_conf 9998889766888965899865145745888778755412057788832
No 4
>>3dhz_A Ribonucleotide reductase subunit R2F; metal free, hydrogen bond, metal binding protein; 1.63A {Corynebacterium ammoniagenes} (A:139-329)
Probab=99.97 E-value=1e-31 Score=213.31 Aligned_cols=122 Identities=19% Similarity=0.198 Sum_probs=112.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 94037899999999999996770003112299999999999999999857630876018899999999999999999985
Q gi|254780136|r 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 80 (125)
Q Consensus 1 ~RDE~lH~~~~~~l~~~l~~e~pe~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yiky~an~rL~~l 80 (125)
+|||++|+.+++.|+++++.|+|+.+++++.++|++++++||++|.+|++++++ .|++++++++||+|+||+||++|
T Consensus 61 ~rDE~~H~~~~~~l~~~l~~e~~~~~~~~~~~~i~~~~~~ave~E~~~~~~~~~---~g~~~~~~~~yi~y~an~~L~~l 137 (191)
T 3dhz_A 61 IRDESVHGYYIGYKYQQGVKKLSEAEQEEYKAYTFDLMYDLYENEIEYTEDIYD---DLGWTEDVKRFLRYNANKALNNL 137 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---TTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 620588999999999999763889889988999999999999999999998864---56549999999999999999977
Q ss_pred CCCCCCCCC---CCCHHHHHHHHCCCCCCCCCCCCHHHHHHHCCC-CCC
Q ss_conf 978788987---888689999834665732131003333430657-789
Q gi|254780136|r 81 GLEPLFKYT---ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL-KWD 125 (125)
Q Consensus 81 Gl~~~f~~~---~nPl~W~~~~~~~~~~~nFFE~r~t~Y~k~~~~-~~D 125 (125)
|++|+|++. .||++|+...+++.+++||||+|||+|+||+.. +||
T Consensus 138 Gl~~~y~~~~~~~~p~~~~~~~~~~~~~~nFFe~r~t~Y~k~~~~~~~d 186 (191)
T 3dhz_A 138 GYEGLFPTDETKVSPAILSSLSPNADENHDFFSGSGSSYVIGKAEDTTD 186 (191)
T ss_dssp TCCCSSCGGGCCCCHHHHHHHC---------------------------
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 9999899877889837898753024656787747744340022577754
No 5
>>1jk0_A RNR Y2, ribonucleoside-diphosphate reductase small chain 1; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} (A:1-103,A:228-419)
Probab=99.97 E-value=2.1e-31 Score=211.34 Aligned_cols=114 Identities=32% Similarity=0.563 Sum_probs=104.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 94037899999999999996770003112299999999999999999857630876018899999999999999999985
Q gi|254780136|r 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 80 (125)
Q Consensus 1 ~RDE~lH~~~~~~l~~~l~~e~pe~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yiky~an~rL~~l 80 (125)
.|||++|+.|++.||+.++.+. .++.+.+++++||++|.+|++++++.+++|++++++++||+|+||+||.+|
T Consensus 166 ~RDE~lH~~f~~~L~~~l~~e~-------~~e~v~el~~eAvelE~ef~~~~l~~~~lGi~~e~i~qYIkY~AN~~L~~L 238 (295)
T 1jk0_A 166 CRDEGLHTDFACLLFAHLKNKP-------DPAIVEKIVTEAVEIEQRYFLDALPVALLGMNADLMNQYVEFVADRLLVAF 238 (295)
T ss_dssp HHHHHHHHHHHHHHHHTCSSCC-------CHHHHHHHHHHHHHHHHHHHHTTSCGGGGTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHCCC-------CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 9899999999999999864032-------188999999999999999999853788579999999999999999999976
Q ss_pred CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCC
Q ss_conf 9787889878886899998346657321310033334306577
Q gi|254780136|r 81 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 123 (125)
Q Consensus 81 Gl~~~f~~~~nPl~W~~~~~~~~~~~nFFE~r~t~Y~k~~~~~ 123 (125)
|++++|++ +||+|||+..+ ..+++||||+||++|+||+..+
T Consensus 239 G~e~~F~~-~NP~~wme~~~-d~~ktNFFE~rvs~YqK~~~~~ 279 (295)
T 1jk0_A 239 GNKKYYKV-ENPFDFMENIS-LAGKTNFFEKRVSDYQKAGVMS 279 (295)
T ss_dssp TCCCSSCC-CCCCGGGGC-------------------------
T ss_pred CCCCCCCC-CCCCHHHHHHC-CCCCCCCCCCCHHHHHHCCCCC
T ss_conf 99987999-99825888724-5788787678788787624776
No 6
>>2p1i_A Ribonucleotide reductase, small chain; F222 twinning, plasmodb PY03671, structural genomics consortium, SGC, oxidoreductase; 2.70A {Plasmodium yoelii yoelii str} (A:162-349)
Probab=99.97 E-value=1.9e-31 Score=211.56 Aligned_cols=114 Identities=31% Similarity=0.617 Sum_probs=104.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 94037899999999999996770003112299999999999999999857630876018899999999999999999985
Q gi|254780136|r 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 80 (125)
Q Consensus 1 ~RDE~lH~~~~~~l~~~l~~e~pe~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yiky~an~rL~~l 80 (125)
+|||++|+.+++.+++.++.+.| ++.+++|+++||++|++|++++++.+++|+|++++++||+|+||+||++|
T Consensus 62 ~rDE~~H~~~~~~l~~~l~~e~~-------~~~~~~l~~eav~~E~~~~~~~~~~~~~gi~~~~~~~yi~y~an~~L~~l 134 (188)
T 2p1i_A 62 SRDEGLHTDFNCLIYSLLENKLP-------ENVVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECL 134 (188)
T ss_dssp HHHHHHHHHHHHHHHHTCSSCCC-------HHHHHHHHHHHHHHHHHHHTTTSCSTTTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 66677768899899999982498-------99999899999999999999970435212006779999999999999977
Q ss_pred CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCC
Q ss_conf 9787889878886899998346657321310033334306577
Q gi|254780136|r 81 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 123 (125)
Q Consensus 81 Gl~~~f~~~~nPl~W~~~~~~~~~~~nFFE~r~t~Y~k~~~~~ 123 (125)
|++|+|+. +||+|||+.+. ..+++||||+|+|+|+||+..+
T Consensus 135 G~~~~f~~-~nP~~w~~~~~-~~~~~nFFE~~~t~Y~k~~~~~ 175 (188)
T 2p1i_A 135 GCSKVFHS-KNPFNWMDLIS-LQGKTNFFEKRVADYQKSGVMA 175 (188)
T ss_dssp TCCCSSCC-CCSCCC----------------------------
T ss_pred CCCCCCCC-CCCCCCHHHCC-CCCCCCCCCCCHHHHHCCCCCC
T ss_conf 99999999-99965055515-6745578877765630366667
No 7
>>1h0o_A Ribonucleoside-diphosphate reductase; oxidoreductase, ribonucleotide reductase, dinuclear metal-cluster; 2.2A {Mus musculus} (A:219-390)
Probab=99.97 E-value=3.9e-31 Score=209.70 Aligned_cols=114 Identities=32% Similarity=0.639 Sum_probs=104.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 94037899999999999996770003112299999999999999999857630876018899999999999999999985
Q gi|254780136|r 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 80 (125)
Q Consensus 1 ~RDE~lH~~~~~~l~~~l~~e~pe~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yiky~an~rL~~l 80 (125)
+|||++|+.+++.+++.++.|.| +..+++|+++||++|.+|++++++.+++|++++++++||+|+||+||.+|
T Consensus 46 ~RDE~~H~~~~~~l~~~l~~e~~-------~~~~~~l~~eav~~E~~~~~~~~~~~~~g~~~~~~~~yi~y~an~~L~~L 118 (172)
T 1h0o_A 46 SRDEGLHCDFACLMFKHLVHKPA-------EQRVREIITNAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLEL 118 (172)
T ss_dssp HHHHHHHHHHHHHHHHTCSSCCC-------HHHHHHHHHHHHHHHHHHHHTTSCGGGGTCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 98899999999999998750238-------99999999998999999999966897479799999999999999999977
Q ss_pred CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCC
Q ss_conf 9787889878886899998346657321310033334306577
Q gi|254780136|r 81 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 123 (125)
Q Consensus 81 Gl~~~f~~~~nPl~W~~~~~~~~~~~nFFE~r~t~Y~k~~~~~ 123 (125)
|++|+|++ +||+||++.+ ..++++||||+|+|+|+||+..+
T Consensus 119 G~~~~y~~-~nP~~~~~~~-~~~~~~nFFe~~~t~Y~k~~~~~ 159 (172)
T 1h0o_A 119 GFNKIFRV-ENPFDFMENI-SLEGKTNFFEKRVGEYQRMGVMS 159 (172)
T ss_dssp TCCCSSCC-CCSCGGGC--------------------------
T ss_pred CCCCCCCC-CCCHHHHHHC-CCCCCCCCCCCCHHHHHHCCCCC
T ss_conf 99998999-9985789861-25677577656578664356678
No 8
>>1jk0_B RNR Y4, ribonucleoside-diphosphate reductase small chain 2; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} (B:147-345)
Probab=99.97 E-value=1.4e-31 Score=212.38 Aligned_cols=114 Identities=23% Similarity=0.474 Sum_probs=104.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 94037899999999999996770003112299999999999999999857630876018899999999999999999985
Q gi|254780136|r 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 80 (125)
Q Consensus 1 ~RDE~lH~~~~~~l~~~l~~e~pe~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yiky~an~rL~~l 80 (125)
.|||++|+.+++.|+++++++.| ++.+++++++||++|.+|++++++.+++|++++++++||+|+||+||++|
T Consensus 71 ~RDE~~H~~~~~~l~~~l~~e~~-------~~~i~~l~~eave~E~~~~~~~~~~~~~g~~~~~~~~yi~y~an~~L~~l 143 (199)
T 1jk0_B 71 CRDRGAYTDFSCLLFAHLRTKPN-------PKIIEKIITEAVEIEKEYYSNSLPVEKFGMDLKSIHTYIEFVADGLLQGF 143 (199)
T ss_dssp HHHHHHHHHHHHHHHHTCSSCCC-------HHHHHHHHHHHHHHHHHHHTTSCC-----------CTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHCCHH-------HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 74799999999999998612211-------77999999999999999998544545337589999999999999999977
Q ss_pred CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCC
Q ss_conf 9787889878886899998346657321310033334306577
Q gi|254780136|r 81 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 123 (125)
Q Consensus 81 Gl~~~f~~~~nPl~W~~~~~~~~~~~nFFE~r~t~Y~k~~~~~ 123 (125)
|++|+|+. +||+|||..+++ .+++||||+|+|+|+||++.+
T Consensus 144 G~~~~f~~-~nP~~~~~~~~~-~~~~nFFe~~~t~Y~k~~~~~ 184 (199)
T 1jk0_B 144 GNEKYYNA-VNPFEFMEDVAT-AGKTTFFEKKVSDYQKASDMS 184 (199)
T ss_dssp TCCCCC-------------------------------------
T ss_pred CCCCCCCC-CCCHHHHHHHHC-CCCCCCCCCCHHHHHCCCCCC
T ss_conf 99987899-997579998737-577655677655310244566
No 9
>>1mxr_A Ribonucleotide reductase R2; radical protein, DI iron, oxidoreductase; 1.42A {Escherichia coli} (A:)
Probab=99.97 E-value=1.6e-30 Score=205.96 Aligned_cols=125 Identities=26% Similarity=0.370 Sum_probs=113.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCHHHHHHHHHHHHHH
Q ss_conf 9403789999999999999677000311----229999999999999999985763087-60188999999999999999
Q gi|254780136|r 1 MRDESLHLNFGIDVINQIKIENPHLWTK----EFQQKSRTMLHEATLLEIAYAHETMPK-GFVGLNAPSCEQYMQFIANR 75 (125)
Q Consensus 1 ~RDE~lH~~~~~~l~~~l~~e~pe~~~~----~~~~~i~~~~~eave~E~~~~~~~~~~-~~~Gl~~~~~~~Yiky~an~ 75 (125)
+|||++|+.|++.+++.++.+.|+.+++ ++.+.+++++++||++|.+|++++++. +++|++++.+++||+|+||+
T Consensus 235 ~RDE~~H~~f~~~l~~~l~~e~~~~~~~~~~~e~~~~v~~l~~eav~~E~~~~~~~~~~~~i~g~~~~~~~~yi~y~an~ 314 (375)
T 1mxr_A 235 ARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNI 314 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTTCCBTTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 85399999999999999984279635889889999999999999999999999998457885898999999999999999
Q ss_pred HHHHCCCCCCCCCCCCCHHHHHHHHCCC-CCCCCCCCCHHHHHHHCCCC-CC
Q ss_conf 9998597878898788868999983466-57321310033334306577-89
Q gi|254780136|r 76 RCHQIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELK-WD 125 (125)
Q Consensus 76 rL~~lGl~~~f~~~~nPl~W~~~~~~~~-~~~nFFE~r~t~Y~k~~~~~-~D 125 (125)
||.+||++++|+..+||+||+..+++.. +++||||+|+|+|++|+..+ ||
T Consensus 315 ~L~~lG~~~~f~~~~~p~~~~~~~~~~~~~~~nFFe~~~t~Y~~~~~~~~~d 366 (375)
T 1mxr_A 315 RMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQIDSEVD 366 (375)
T ss_dssp HHHHTTCCCCSCCCCCSCGGGGGTC---------------------------
T ss_pred HHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCC
T ss_conf 9997799999999999856899987138875487668710012335567677
No 10
>>3ee4_A Probable ribonucleoside-diphosphate reductase; manganese, iron, DIIRON, carboxylate, oxidase, ligand, cavity, monooxygenase; HET: MYR; 1.90A {Mycobacterium tuberculosis} (A:)
Probab=99.92 E-value=2.1e-25 Score=174.86 Aligned_cols=116 Identities=15% Similarity=0.069 Sum_probs=108.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 94037899999999999996770003112299999999999999999857630876018899999999999999999985
Q gi|254780136|r 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 80 (125)
Q Consensus 1 ~RDE~lH~~~~~~l~~~l~~e~pe~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yiky~an~rL~~l 80 (125)
+|||++|+.||+.+++.++.|.|+.+ ++..+.+++++.+||++|.+|+.++++.+++|++++.+.+|++|++|+||..+
T Consensus 208 ~rDE~~H~~f~~~~~~~l~~e~~e~~-~~~~e~~~~~~~~~v~~e~~~~~~~~~~~~~g~~~~~~~~y~~~~~~~~l~~l 286 (323)
T 3ee4_A 208 GDDERRHMAWGTFTCRRHVAADDANW-TVFETRMNELIPLALRLIEEGFALYGDQPPFDLSKDDFLQYSTDKGMRRFGTI 286 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTHHH-HHHHHHHHHHHHHHHHHHHHHHHTTTTCCSTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 80488999999999999986395030-69999999999999999999988627776679999999999999999987994
Q ss_pred CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHCC
Q ss_conf 97878898788868999983466573213100333343065
Q gi|254780136|r 81 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 121 (125)
Q Consensus 81 Gl~~~f~~~~nPl~W~~~~~~~~~~~nFFE~r~t~Y~k~~~ 121 (125)
|+++.|+...+|++|+. ..+++||||+|+|+|+|||+
T Consensus 287 g~~~~~~~~~~~~~~~~----~~~~~nFFe~~~~~Y~~~~a 323 (323)
T 3ee4_A 287 SNARGRPVAEIDVDYSP----AQLEDTFADEDRRTLAAASA 323 (323)
T ss_dssp HTTTTCCGGGTCC----------------------------
T ss_pred CCCCCCCHHHCCCCCCH----HHHHHHHHHHHHHHHHHHCC
T ss_conf 22346984433676897----99999988989999876149
No 11
>>2o1z_A Ribonucleotide reductase subunit R2; small subunit ribonucleotide reductase, oxidoreductase, DNA replication, iron, DIIRON, radical, R2 subunit; 2.40A {Plasmodium vivax} (A:161-311)
Probab=99.90 E-value=3e-24 Score=167.89 Aligned_cols=89 Identities=29% Similarity=0.603 Sum_probs=83.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 94037899999999999996770003112299999999999999999857630876018899999999999999999985
Q gi|254780136|r 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 80 (125)
Q Consensus 1 ~RDE~lH~~~~~~l~~~l~~e~pe~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yiky~an~rL~~l 80 (125)
+|||++|+.|++.++++++.+.| ++.+.+|+++||++|.+|++++++.+.+|++++++++||+|+||+||.+|
T Consensus 62 ~RDE~lH~~~~~~l~~~l~~e~~-------~~~~~~~~~eave~E~~~~~~~~~~~~~g~~~~~i~~yi~y~an~~l~~L 134 (151)
T 2o1z_A 62 SRDEGLHTDFNCLIYSLLENKLP-------EEVVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECL 134 (151)
T ss_dssp HHHHHHHHHHHHHHHHTCSSCCC-------HHHHHHHHHHHHHHHHTTBTTTBCCTTTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 40256668899999999874599-------99999999999999999999966798689999999999999999999977
Q ss_pred CCCCCCCCCCCCHHHHH
Q ss_conf 97878898788868999
Q gi|254780136|r 81 GLEPLFKYTENPFPWMS 97 (125)
Q Consensus 81 Gl~~~f~~~~nPl~W~~ 97 (125)
|++++|++ +||+|||+
T Consensus 135 G~~~~y~~-~nP~~w~e 150 (151)
T 2o1z_A 135 GSPKIFHA-KNPFNWMD 150 (151)
T ss_dssp TCCCSSCC-CCCCTTTT
T ss_pred CCCCCCCC-CCCCCCCC
T ss_conf 99998999-99986515
No 12
>>3chh_A P-aminobenzoate N-oxygenase; DI-iron oxygenase, oxidoreductase; 2.00A {Streptomyces thioluteus} PDB: 3chi_A 3cht_A* 3chu_A 2jcd_A (A:)
Probab=98.76 E-value=2.6e-09 Score=77.04 Aligned_cols=102 Identities=11% Similarity=0.099 Sum_probs=86.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH-HHHHHHHHHHHHHHHHH
Q ss_conf 94037899999999999996770003112299999999999999999857630876018899-99999999999999998
Q gi|254780136|r 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA-PSCEQYMQFIANRRCHQ 79 (125)
Q Consensus 1 ~RDE~lH~~~~~~l~~~l~~e~pe~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~-~~~~~Yiky~an~rL~~ 79 (125)
+|||+.|+.|++.+++.+..+.|....+.+.+.+..++..++..|..+..+++ ..+|++. +.+.+|++|.+|+++..
T Consensus 224 ~rDE~~H~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~--~~~Gl~~~~~~~~~~~~~~~~~~~~ 301 (336)
T 3chh_A 224 LRDETAHGSIVVEVVRELYARMNEQQRRALVRCLPIALEAFAEQDLSALLLEL--NAAGIRGAEEIVGDLRSTAGGTRLV 301 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHCCCTHHHHHHH--HHHTCTTHHHHHHHCC-------CC
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH--HHCCCCHHHHHHHHHHCHHHHHHHH
T ss_conf 99999999999999999998699999999999999999999861324779999--8869987999999872958789999
Q ss_pred CCCCCCCCCCCCCHHHHHHH-HCCCCCCCCCCC
Q ss_conf 59787889878886899998-346657321310
Q gi|254780136|r 80 IGLEPLFKYTENPFPWMSEV-IDLKKEKNFFET 111 (125)
Q Consensus 80 lGl~~~f~~~~nPl~W~~~~-~~~~~~~nFFE~ 111 (125)
+|++ ++++|+++. +.+.-...|+++
T Consensus 302 ~~~~-------~~~~~l~~~Gl~~~~~~~~~~~ 327 (336)
T 3chh_A 302 RDFS-------GARKMVEQLGLDDAVDFDFPER 327 (336)
T ss_dssp CBCH-------HHHHHHHHTTCTTTCCCCCCCC
T ss_pred HHHH-------HHHHHHHHCCCCCCCCCCCCCC
T ss_conf 9888-------8999999848988999986768
No 13
>>2oc5_A Hypothetical protein; NP_895059.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: UNL; 1.68A {Prochlorococcus marinus str} (A:)
Probab=92.99 E-value=0.71 Score=25.76 Aligned_cols=75 Identities=13% Similarity=0.147 Sum_probs=43.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9403789999999999999677000311229999999999999999985763087-601889999999999999999998
Q gi|254780136|r 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK-GFVGLNAPSCEQYMQFIANRRCHQ 79 (125)
Q Consensus 1 ~RDE~lH~~~~~~l~~~l~~e~pe~~~~~~~~~i~~~~~eave~E~~~~~~~~~~-~~~Gl~~~~~~~Yiky~an~rL~~ 79 (125)
|+||.+|+.||..-++.-. +.+++++.+.-++..-+-..-.+.+-.+ .++|+.++.+.+=.--.-...|..
T Consensus 155 VkDEY~HLN~Ge~WLk~~f--------~~~k~el~~AN~~nLPlv~~ML~qV~~Da~vL~Meke~lvedFmi~Y~eAL~~ 226 (244)
T 2oc5_A 155 VKDEYTHLNYGEAWLKANL--------ESCREELLEANRENLPLIRRXLDQVAGDAAVLQXDKEDLIEDFLIAYQESLTE 226 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 6436766015899999999--------99999999988850649999999999889997688999999999999999997
Q ss_pred CCCC
Q ss_conf 5978
Q gi|254780136|r 80 IGLE 83 (125)
Q Consensus 80 lGl~ 83 (125)
||+.
T Consensus 227 IGf~ 230 (244)
T 2oc5_A 227 IGFN 230 (244)
T ss_dssp HTCC
T ss_pred CCCC
T ss_conf 5975
No 14
>>1za0_A Possible acyl-[acyl-carrier protein] desaturase DESA2 (acyl-[ACP] desaturase) (stearoyl-ACP...; four-helix bundle; 2.00A {Mycobacterium tuberculosis H37RV} (A:)
Probab=58.32 E-value=14 Score=17.89 Aligned_cols=78 Identities=15% Similarity=0.093 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH---HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 40378999999999999967700031122999999999999999---998576308760188999999999999999999
Q gi|254780136|r 2 RDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE---IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 78 (125)
Q Consensus 2 RDE~lH~~~~~~l~~~l~~e~pe~~~~~~~~~i~~~~~eave~E---~~~~~~~~~~~~~Gl~~~~~~~Yiky~an~rL~ 78 (125)
+||.-|..|+..+++.+.+.+|.. ....+..++......- ..|.+...-..-.|+.. ..+...+....++
T Consensus 187 ~DE~rH~~f~~~~~~~~l~~~p~~----~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~y~---~~~~~~v~~~~~~ 259 (275)
T 1za0_A 187 RDEVRHEEFFANLVTHCLDYTRDE----TIAAIAARAADLDVLGADIEAYRDKLQNVADAGIFG---KPQLRQLISDRIT 259 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSHHH----HHHHHHHHHHHCCCTTTTSTTCHHHHHHHHHTTSSS---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHH----HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCC---HHHHHHHHHHHHH
T ss_conf 889999999999999998658087----999999999707998887876789999999968998---8999999999999
Q ss_pred HCCCCCCC
Q ss_conf 85978788
Q gi|254780136|r 79 QIGLEPLF 86 (125)
Q Consensus 79 ~lGl~~~f 86 (125)
.+|+.++=
T Consensus 260 ~~~~~~~~ 267 (275)
T 1za0_A 260 AWGLAGEP 267 (275)
T ss_dssp HTTCTTCG
T ss_pred HHCCCCHH
T ss_conf 82888713
No 15
>>2uw1_A Desaturase, plastid delta4 multifunctional acyl-ACYL carrier protein desaturase; electron transfer, four-helix bundle, oxidoreductase; HET: GVM; 1.95A {Hedera helix} PDB: 2uw1_B* 1oq4_A 1oq7_A 1oq9_A 1oqb_A 1afr_A 2j2f_A (A:156-321)
Probab=50.76 E-value=19 Score=17.14 Aligned_cols=23 Identities=17% Similarity=0.302 Sum_probs=20.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 40378999999999999967700
Q gi|254780136|r 2 RDESLHLNFGIDVINQIKIENPH 24 (125)
Q Consensus 2 RDE~lH~~~~~~l~~~l~~e~pe 24 (125)
+||..|..|..+++..+..-.|+
T Consensus 47 ~DE~RH~~fY~~~v~~~le~dPd 69 (166)
T 2uw1_A 47 SDEKRHATAYTKIVEKLAEIDPD 69 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCH
T ss_conf 78999999999999999843817
No 16
>>3ge3_A Toluene-4-monooxygenase system protein A; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} PDB: 3ge8_A 3dhi_A* 3dhh_A* 3dhg_A* 3i5j_A 3i63_A (A:1-349,A:476-500)
Probab=38.45 E-value=29 Score=15.97 Aligned_cols=81 Identities=17% Similarity=0.072 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH----HHCCCCCCCCC-HHHHHHHHHHHHHHH
Q ss_conf 4037899999999999996770003112299999999999999999857----63087601889-999999999999999
Q gi|254780136|r 2 RDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH----ETMPKGFVGLN-APSCEQYMQFIANRR 76 (125)
Q Consensus 2 RDE~lH~~~~~~l~~~l~~e~pe~~~~~~~~~i~~~~~eave~E~~~~~----~~~~~~~~Gl~-~~~~~~Yiky~an~r 76 (125)
+||.-|...+..+++.+..+... +..++.+-..+-.+...=..+.- +..+.+..-.+ .+.+.+-+.-....+
T Consensus 229 ~de~rH~~~g~~ll~~l~~~~nr---~~lQ~ald~w~~ra~~af~~~~~~~~d~~~~~~~~~~~~~e~~~d~~~~~~~~~ 305 (374)
T 3ge3_A 229 TDESRHAQQGGPALQLLIENGKR---EEAQKKVDMAIWRAWRLFAVLTGPVMDYYTPLEDRSQSFKEFMYEWIIGQFERS 305 (374)
T ss_dssp HHHHHHGGGHHHHHHHHHHTTCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCSSCHHHHHHHHTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999998589999999967766---999999999999889999988888888448663225349999999988999999
Q ss_pred HHHCCCCCC
Q ss_conf 998597878
Q gi|254780136|r 77 CHQIGLEPL 85 (125)
Q Consensus 77 L~~lGl~~~ 85 (125)
|..+||..+
T Consensus 306 L~~lGL~~P 314 (374)
T 3ge3_A 306 LIDLGLDKP 314 (374)
T ss_dssp HHHTTCCCC
T ss_pred HHHHCCCCC
T ss_conf 998279986
No 17
>>1otk_A Protein PAAC, phenylacetic acid degradation protein PAAC; structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli K12} (A:82-219)
Probab=28.46 E-value=43 Score=14.96 Aligned_cols=76 Identities=9% Similarity=0.095 Sum_probs=53.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC---------CCCCHHHHHHHHHH
Q ss_conf 940378999999999999967700031122999999999999999998576308760---------18899999999999
Q gi|254780136|r 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF---------VGLNAPSCEQYMQF 71 (125)
Q Consensus 1 ~RDE~lH~~~~~~l~~~l~~e~pe~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~---------~Gl~~~~~~~Yiky 71 (125)
+++|.-|..++...+..+..-- ++-++.+++|++.=..++..+|+.+. ++.+.+.+++--.-
T Consensus 47 ~kEe~yH~~h~~~w~~rL~~gt---------~Es~~rmq~Al~~~wp~~~elF~~~~~~~~l~~~Gi~~~~~~Lr~~w~~ 117 (138)
T 1otk_A 47 IKEARYHLRFSRGWLERLGNGT---------DVSGQKMQQAINKLWRFTAELFDADEIDIALSEEGIAVDPRTLRAAWEA 117 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSC---------HHHHHHHHHHHHHHGGGTGGGGCCCHHHHHHHHTTSSCCGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCC---------HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 8999999999999999998568---------9999999999999989886644778268999887898987999999999
Q ss_pred HHHHHHHHCCCCCC
Q ss_conf 99999998597878
Q gi|254780136|r 72 IANRRCHQIGLEPL 85 (125)
Q Consensus 72 ~an~rL~~lGl~~~ 85 (125)
.....|..+||+-+
T Consensus 118 ~v~~~l~~agL~~P 131 (138)
T 1otk_A 118 EVFAGINEATLNVP 131 (138)
T ss_dssp HHHHHHHHTTCCCC
T ss_pred HHHHHHHHHCCCCC
T ss_conf 99999998089999
No 18
>>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator of TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824} (A:81-203)
Probab=25.69 E-value=48 Score=14.66 Aligned_cols=47 Identities=4% Similarity=0.021 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999999985763087601889999999999999999998597878
Q gi|254780136|r 39 HEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 85 (125)
Q Consensus 39 ~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yiky~an~rL~~lGl~~~ 85 (125)
++++++=.-.....+..++...+++.+.+.+++.....=+.+|++..
T Consensus 71 ~E~ae~ll~l~n~~ld~~~~~~~~ee~~~ri~~~~~~ler~lG~~~~ 117 (123)
T 3b81_A 71 LETAEIILTLSHFYLDEDLFKWKKEDXSLKLTAFKETLIKILDADED 117 (123)
T ss_dssp HHHHHHHHHHHHTTTCHHHHTCCGGGHHHHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999999999999999987337432999999999999998689966
No 19
>>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} (B:)
Probab=24.51 E-value=17 Score=17.36 Aligned_cols=29 Identities=7% Similarity=0.173 Sum_probs=22.0
Q ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf 99999857630876018899999999999
Q gi|254780136|r 43 LLEIAYAHETMPKGFVGLNAPSCEQYMQF 71 (125)
Q Consensus 43 e~E~~~~~~~~~~~~~Gl~~~~~~~Yiky 71 (125)
++..+|...+..-.-.||+.+.+..|+.-
T Consensus 10 eLD~EWveLi~eA~eagis~eeiR~fL~~ 38 (57)
T 1b0n_B 10 ELDQEWVELMVEAKEANISPEEIRKYLLL 38 (57)
T ss_dssp CCCHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 98899999999999949999999999982
Done!