RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780136|ref|YP_003064549.1| ribonucleotide-diphosphate
reductase subunit beta [Candidatus Liberibacter asiaticus str. psy62]
(125 letters)
>d1syya_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Chlamydia
trachomatis [TaxId: 813]}
Length = 317
Score = 94.8 bits (235), Expect = 2e-21
Identities = 50/96 (52%), Positives = 69/96 (71%), Gaps = 1/96 (1%)
Query: 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 60
+RDE++HLNFGID+IN IK ENP +WT E QQ+ ++ A LEI YA + +P+G +GL
Sbjct: 223 LRDETIHLNFGIDLINGIKEENPEIWTPELQQEIVELIKRAVDLEIEYAQDCLPRGILGL 282
Query: 61 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 96
A Y+Q IA+RR +IGL+P++ T+NPFPWM
Sbjct: 283 RASMFIDYVQHIADRRLERIGLKPIYH-TKNPFPWM 317
>d1mxra_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Escherichia coli
[TaxId: 562]}
Length = 339
Score = 81.4 bits (200), Expect = 2e-17
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 5/103 (4%)
Query: 1 MRDESLHLNFGIDVINQIKIENPHLWTK----EFQQKSRTMLHEATLLEIAYAHETMPKG 56
RDE+LHL ++N ++ E +Q+ + +A E +A G
Sbjct: 235 ARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDG 294
Query: 57 -FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSE 98
+GLN QY+++I N R +GL+ F+ NP PW++
Sbjct: 295 SMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINT 337
>d1jk0a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Baker's yeast
(Saccharomyces cerevisiae), Y2 [TaxId: 4932]}
Length = 334
Score = 76.7 bits (188), Expect = 5e-16
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 60
RDE LH +F + +K + ++ ++ EA +E Y + +P +G+
Sbjct: 245 CRDEGLHTDFACLLFAHLKNKPDPAIVEK-------IVTEAVEIEQRYFLDALPVALLGM 297
Query: 61 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 96
NA QY++F+A+R G + +K ENPF +M
Sbjct: 298 NADLMNQYVEFVADRLLVAFGNKKYYK-VENPFDFM 332
>d1w68a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 67.1 bits (163), Expect = 4e-13
Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 8/93 (8%)
Query: 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 60
RDE LH +F + + + R ++ A +E + E +P +G+
Sbjct: 197 SRDEGLHCDFACLMFKHLVHKPAEQRV-------REIITNAVRIEQEFLTEALPVKLIGM 249
Query: 61 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 93
N +QY++F+A+R ++G +F+ ENPF
Sbjct: 250 NCTLMKQYIEFVADRLMLELGFNKIFR-VENPF 281
>d3dhza1 a.25.1.2 (A:14-297) Ribonucleotide reductase R2
{Corynebacterium ammoniagenes [TaxId: 1697]}
Length = 284
Score = 60.5 bits (146), Expect = 4e-11
Identities = 19/96 (19%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
Query: 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 60
+RDES+H + Q + +E++ + ++++ EI Y + +G
Sbjct: 186 IRDESVHGYYIGYKYQQGVKKLSEAEQEEYKAYTFDLMYDLYENEIEYTEDIYDD--LGW 243
Query: 61 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PW 95
++++++ AN+ + +G E LF E P
Sbjct: 244 TE-DVKRFLRYNANKALNNLGYEGLFPTDETKVSPA 278
>d1jk0b_ a.25.1.2 (B:) Ribonucleotide reductase R2 {Baker's yeast
(Saccharomyces cerevisiae), Y4 [TaxId: 4932]}
Length = 285
Score = 60.6 bits (146), Expect = 4e-11
Identities = 16/65 (24%), Positives = 29/65 (44%)
Query: 22 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 81
HL TK + ++ EA +E Y ++P G++ S Y++F+A+ G
Sbjct: 221 FAHLRTKPNPKIIEKIITEAVEIEKEYYSNSLPVEKFGMDLKSIHTYIEFVADGLLQGFG 280
Query: 82 LEPLF 86
E +
Sbjct: 281 NEKYY 285
>d1r2fa_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Salmonella
typhimurium [TaxId: 90371]}
Length = 283
Score = 57.1 bits (137), Expect = 4e-10
Identities = 19/102 (18%), Positives = 37/102 (36%), Gaps = 8/102 (7%)
Query: 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 60
+RDE++H + + + +E + + +L E EI Y +
Sbjct: 184 IRDEAVHGYYIGYKYQIALQKLSAIEREELKLFALDLLMELYDNEIRYTEALYAET---G 240
Query: 61 NAPSCEQYMQFIANRRCHQIGLEPLFK---YTENP--FPWMS 97
+ ++ + AN+ +G E LF NP +S
Sbjct: 241 WVNDVKAFLCYNANKALMNLGYEALFPPEMADVNPAILAALS 282
>g1pya.1 d.155.1.1 (A:,B:) Histidine decarboxylase {Lactobacillus
sp., strain 30a [TaxId: 1591]}
Length = 310
Score = 25.2 bits (55), Expect = 1.8
Identities = 8/23 (34%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 46 IAYAHETMPKGFVGLNAPSCEQY 68
I +A+ M G +G NA + Y
Sbjct: 241 IGFAYTMMEPGQIG-NAITVAPY 262
>d2oc5a1 a.25.1.6 (A:20-241) Hypothetical protein PMT1231
{Prochlorococcus marinus [TaxId: 1219]}
Length = 222
Score = 24.0 bits (52), Expect = 3.8
Identities = 6/11 (54%), Positives = 9/11 (81%)
Query: 1 MRDESLHLNFG 11
++DE HLN+G
Sbjct: 135 VKDEYTHLNYG 145
>d2v4ja2 d.58.36.2 (A:2-167) Dissimilatory sulfite reductase subunit
alpha, DsrA {Desulfovibrio vulgaris [TaxId: 881]}
Length = 166
Score = 23.6 bits (51), Expect = 5.3
Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 84 PLFKYTENPFPWMSEVIDLKKEK 106
P E+ PW S V D+K+E
Sbjct: 6 PKLDQLESG-PWPSFVSDIKQEA 27
>d3c7ba2 d.58.36.2 (A:1-166) Dissimilatory sulfite reductase subunit
alpha, DsrA {Archaeoglobus fulgidus [TaxId: 2234]}
Length = 166
Score = 22.8 bits (49), Expect = 9.9
Identities = 9/23 (39%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 84 PLFKYTENPFPWMSEVIDLKKEK 106
PL E PW S V ++KK
Sbjct: 4 PLLDELEKG-PWPSFVKEIKKTA 25
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.135 0.421
Gapped
Lambda K H
0.267 0.0610 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 472,180
Number of extensions: 19434
Number of successful extensions: 47
Number of sequences better than 10.0: 1
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 16
Length of query: 125
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 50
Effective length of database: 1,377,846
Effective search space: 68892300
Effective search space used: 68892300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.5 bits)