BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780136|ref|YP_003064549.1| ribonucleotide-diphosphate
reductase subunit beta [Candidatus Liberibacter asiaticus str. psy62]
(125 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780964|ref|YP_003065377.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
Liberibacter asiaticus str. psy62]
Length = 352
Score = 268 bits (684), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 125/125 (100%), Positives = 125/125 (100%)
Query: 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 60
MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL
Sbjct: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
Query: 61 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 120
NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA
Sbjct: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
Query: 121 ELKWD 125
ELKWD
Sbjct: 348 ELKWD 352
>gi|254780845|ref|YP_003065258.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
Liberibacter asiaticus str. psy62]
Length = 352
Score = 268 bits (684), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 125/125 (100%), Positives = 125/125 (100%)
Query: 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 60
MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL
Sbjct: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
Query: 61 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 120
NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA
Sbjct: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
Query: 121 ELKWD 125
ELKWD
Sbjct: 348 ELKWD 352
>gi|254781006|ref|YP_003065419.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
Liberibacter asiaticus str. psy62]
Length = 125
Score = 265 bits (677), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 125/125 (100%), Positives = 125/125 (100%)
Query: 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 60
MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL
Sbjct: 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 60
Query: 61 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 120
NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA
Sbjct: 61 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 120
Query: 121 ELKWD 125
ELKWD
Sbjct: 121 ELKWD 125
>gi|254780136|ref|YP_003064549.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
Liberibacter asiaticus str. psy62]
Length = 125
Score = 265 bits (677), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 125/125 (100%), Positives = 125/125 (100%)
Query: 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 60
MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL
Sbjct: 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 60
Query: 61 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 120
NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA
Sbjct: 61 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 120
Query: 121 ELKWD 125
ELKWD
Sbjct: 121 ELKWD 125
>537021.9.peg.75_1
Length = 136
Score = 263 bits (672), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 124/125 (99%), Positives = 124/125 (99%)
Query: 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 60
MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL
Sbjct: 12 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 71
Query: 61 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 120
NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA
Sbjct: 72 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 131
Query: 121 ELKWD 125
LKWD
Sbjct: 132 GLKWD 136
>537021.9.peg.612_1
Length = 53
Score = 32.7 bits (73), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/17 (82%), Positives = 15/17 (88%)
Query: 100 IDLKKEKNFFETRVTEY 116
+DLKKE NFFETR TEY
Sbjct: 37 MDLKKENNFFETRTTEY 53
>gi|254781122|ref|YP_003065535.1| putative thiamine pyrophosphokinase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 222
Score = 23.5 bits (49), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 11 GIDVINQIKIENPHLWTKEFQQKSRTMLHE 40
GI +Q+K+ P LW +F RT+L +
Sbjct: 41 GICHASQLKVV-PELWIGDFDSVDRTLLQQ 69
>gi|254780395|ref|YP_003064808.1| organic solvent tolerance protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 762
Score = 23.1 bits (48), Expect = 1.8, Method: Composition-based stats.
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 55 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 93
+G + A + E+Y++ I N H + L +T+N F
Sbjct: 518 EGIAQVYAATDEKYIKTIPNEDSHSLVLNSTSLFTQNRF 556
>gi|254780439|ref|YP_003064852.1| carbamoyl phosphate synthase large subunit [Candidatus Liberibacter
asiaticus str. psy62]
Length = 1162
Score = 22.7 bits (47), Expect = 2.5, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 78 HQIGLEPLFKYTEN---PFPWMSEVIDLKKEKNFFETRVTE 115
HQ+GL P+FK + F + + E NF V+E
Sbjct: 572 HQMGLHPVFKCVDTCAGEFSSPTSYMYSTYETNFINKPVSE 612
>gi|254781051|ref|YP_003065464.1| alpha-ketoglutarate decarboxylase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 957
Score = 22.3 bits (46), Expect = 3.3, Method: Composition-based stats.
Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 10/55 (18%)
Query: 39 HEATLLEIAYAH----------ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 83
H+ L E++ AH + KG +GL + + + + +++ C IG+E
Sbjct: 126 HQKDLSELSPAHYGFVKADYDRKICMKGVLGLESATIPEIVDVLSHLYCSNIGVE 180
>gi|254780808|ref|YP_003065221.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
[Candidatus Liberibacter asiaticus str. psy62]
Length = 626
Score = 21.9 bits (45), Expect = 3.3, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 63 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFP 94
PS E + R HQI LEP T+ +P
Sbjct: 276 PSIEDKIVRFGERNGHQIFLEPEGLNTDVVYP 307
>gi|254780809|ref|YP_003065222.1| tRNA modification GTPase TrmE [Candidatus Liberibacter asiaticus
str. psy62]
Length = 440
Score = 21.2 bits (43), Expect = 6.6, Method: Composition-based stats.
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 58 VGLNAPSCEQYMQFIANRR 76
+ L+ PSC Q +FI ++
Sbjct: 23 IRLSGPSCFQVCEFICKKK 41
>gi|254781167|ref|YP_003065580.1| tRNA-dihydrouridine synthase A [Candidatus Liberibacter asiaticus
str. psy62]
Length = 322
Score = 20.8 bits (42), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 9 NFGIDVINQIKIENPHLW 26
N D++ +IK ENP L+
Sbjct: 173 NLDYDIVYEIKKENPDLF 190
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.321 0.135 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,549
Number of Sequences: 1233
Number of extensions: 3010
Number of successful extensions: 15
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 14
length of query: 125
length of database: 328,796
effective HSP length: 64
effective length of query: 61
effective length of database: 249,884
effective search space: 15242924
effective search space used: 15242924
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 33 (17.3 bits)