HHsearch alignment for GI: 254780137 and conserved domain: PRK01710
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=91.94 E-value=0.76 Score=24.85 Aligned_cols=108 Identities=18% Similarity=0.285 Sum_probs=63.2
Q ss_pred HHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCC----CCCCHHHHCCCCCEEE
Q ss_conf 224117874254256789999998198857589995596030787332667889774508----8988888605883786
Q gi|254780137|r 200 FSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKS----GPKPLSETMNNADVFL 275 (779)
Q Consensus 200 l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~----~~~~l~ea~~~adv~i 275 (779)
T Consensus 12 l~~kkv~i~GlG~sG~a~a~~L~~~g~---~v~~~D~~-----~-~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~d~vv 82 (458)
T PRK01710 12 IKNKKVAVVGIGVSNIPLIKFLVKLGA---KVTAFDKK-----S-EEELGEISLELKEKGVNLELGENYLDKLTGFDVIF 82 (458)
T ss_pred HCCCEEEEEEECHHHHHHHHHHHHCCC---EEEEEECC-----C-CHHHHHHHHHHHHCCCEEEECCCHHHHCCCCCEEE
T ss_conf 789969999787889999999997889---79999898-----8-43148999999857998995784054237888899
Q ss_pred ECCCCCCCCHHHHHHCCCC-CEEEEECCCCCCCCHHHHHH-HCCCEEECCCC
Q ss_conf 2578877898899721899-77999178720099889985-18987980588
Q gi|254780137|r 276 GLSVAGALDPAILKFMAEK-PLIMVLANPNPEAMPDEIKK-VRPDAMICTGR 325 (779)
Q Consensus 276 G~S~~g~~t~e~v~~M~~~-PiIfaLsNP~pEi~p~~a~~-~~g~aivatGr 325 (779)
T Consensus 83 ~SPgI~~~~p~~~~a~~~gi~v~-------~e--~el~~~~~~~~~IaVTGT 125 (458)
T PRK01710 83 KTPSMRIDSPELVKAKEEGAYIT-------SE--MEEFIKYCPAKVFGITGS 125 (458)
T ss_pred ECCCCCCCCHHHHHHHHCCCCEE-------CH--HHHHHHHCCCCEEEEECC
T ss_conf 89987998999999998799374-------09--999986375877999368