HHsearch alignment for GI: 254780137 and conserved domain: PRK03369
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=93.87 E-value=0.4 Score=26.81 Aligned_cols=86 Identities=14% Similarity=0.146 Sum_probs=51.5
Q ss_pred HCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCCCCCCHHHHCCCCCEEEECCCCC
Q ss_conf 41178742542567899999981988575899955960307873326678897745088988888605883786257887
Q gi|254780137|r 202 DIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKSGPKPLSETMNNADVFLGLSVAG 281 (779)
Q Consensus 202 ~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~~~~~l~ea~~~adv~iG~S~~g 281 (779)
T Consensus 12 Gk~V~V~GlG~sG~a~a~~L~~~G~---~v~~~D~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SPGI~ 81 (487)
T PRK03369 12 GAPVLVAGAGVTGRAVLAALTRFGA---RPTVCDDD-------PDALRPHAERGVATVSSSDAVQQIADYALVVTSPGFP 81 (487)
T ss_pred CCEEEEEEECHHHHHHHHHHHHCCC---EEEEEECC-------CHHHHHHHHCCCCEECCCCCHHHHCCCCEEEECCCCC
T ss_conf 8989999156838999999997869---79999898-------2577999865994863762265646778899899579
Q ss_pred CCCHHHHHHCCCC-CEE
Q ss_conf 7898899721899-779
Q gi|254780137|r 282 ALDPAILKFMAEK-PLI 297 (779)
Q Consensus 282 ~~t~e~v~~M~~~-PiI 297 (779)
T Consensus 82 ~~~p~l~~a~~~gi~i~ 98 (487)
T PRK03369 82 PTAPVLAAAAAAGVPIW 98 (487)
T ss_pred CCCHHHHHHHHCCCCEE
T ss_conf 98999999998899076