HHsearch alignment for GI: 254780137 and conserved domain: TIGR01318
>TIGR01318 gltD_gamma_fam glutamate synthase, small subunit; InterPro: IPR006006 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate. 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including Escherichia coli. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=97.29 E-value=0.00018 Score=49.95 Aligned_cols=80 Identities=34% Similarity=0.596 Sum_probs=57.2
Q ss_pred HHCCCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECC----CEEECCCCC-CCCHHHHHHHHC-----------
Q ss_conf 7098822411787425425678999999819885758999559----603078733-266788977450-----------
Q gi|254780137|r 195 LVGKKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLE----GLVYEGREK-KFDKWKSVYAQK----------- 258 (779)
Q Consensus 195 ~~gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~----Gli~~~r~~-~~~~~~~~~a~~----------- 258 (779)
T Consensus 136 ~S~V~~~g~rVAviGAGPAGLaCAD~L~RaGV---~v~VfDRhP~iGGLLtFGIPsFKLd--K~V~~~Rr~if~~MGi~F 210 (480)
T TIGR01318 136 LSHVKPTGKRVAVIGAGPAGLACADILARAGV---QVVVFDRHPEIGGLLTFGIPSFKLD--KAVLSRRREIFTAMGIEF 210 (480)
T ss_pred CCCCCCCCCEEEEECCCCCHHHHHHHHHHCCC---EEEEEECCCCCCCCCCCCCCCHHHH--HHHHHHHHHHHHHCCCEE
T ss_conf 87730078278997788602579998751785---5999747703076013688851102--789999999997589278
Q ss_pred ---CC---CCCHHHHCCCCC-EEEECCC
Q ss_conf ---88---988888605883-7862578
Q gi|254780137|r 259 ---SG---PKPLSETMNNAD-VFLGLSV 279 (779)
Q Consensus 259 ---~~---~~~l~ea~~~ad-v~iG~S~ 279 (779)
T Consensus 211 ~Ln~EvGrD~~l~~LLe~YDAVFlGvGT 238 (480)
T TIGR01318 211 KLNTEVGRDISLDDLLEDYDAVFLGVGT 238 (480)
T ss_pred ECCCEEECCCCHHHHHHHCCEEEEECCC
T ss_conf 6581650325554443114848961143