HHsearch alignment for GI: 254780137 and conserved domain: TIGR01318

>TIGR01318 gltD_gamma_fam glutamate synthase, small subunit; InterPro: IPR006006 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate. 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including Escherichia coli. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=97.29  E-value=0.00018  Score=49.95  Aligned_cols=80  Identities=34%  Similarity=0.596  Sum_probs=57.2

Q ss_pred             HHCCCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECC----CEEECCCCC-CCCHHHHHHHHC-----------
Q ss_conf             7098822411787425425678999999819885758999559----603078733-266788977450-----------
Q gi|254780137|r  195 LVGKKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLE----GLVYEGREK-KFDKWKSVYAQK-----------  258 (779)
Q Consensus       195 ~~gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~----Gli~~~r~~-~~~~~~~~~a~~-----------  258 (779)
T Consensus       136 ~S~V~~~g~rVAviGAGPAGLaCAD~L~RaGV---~v~VfDRhP~iGGLLtFGIPsFKLd--K~V~~~Rr~if~~MGi~F  210 (480)
T TIGR01318       136 LSHVKPTGKRVAVIGAGPAGLACADILARAGV---QVVVFDRHPEIGGLLTFGIPSFKLD--KAVLSRRREIFTAMGIEF  210 (480)
T ss_pred             CCCCCCCCCEEEEECCCCCHHHHHHHHHHCCC---EEEEEECCCCCCCCCCCCCCCHHHH--HHHHHHHHHHHHHCCCEE
T ss_conf             87730078278997788602579998751785---5999747703076013688851102--789999999997589278


Q ss_pred             ---CC---CCCHHHHCCCCC-EEEECCC
Q ss_conf             ---88---988888605883-7862578
Q gi|254780137|r  259 ---SG---PKPLSETMNNAD-VFLGLSV  279 (779)
Q Consensus       259 ---~~---~~~l~ea~~~ad-v~iG~S~  279 (779)
T Consensus       211 ~Ln~EvGrD~~l~~LLe~YDAVFlGvGT  238 (480)
T TIGR01318       211 KLNTEVGRDISLDDLLEDYDAVFLGVGT  238 (480)
T ss_pred             ECCCEEECCCCHHHHHHHCCEEEEECCC
T ss_conf             6581650325554443114848961143