HHsearch alignment for GI: 254780137 and conserved domain: TIGR02356
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF; InterPro: IPR012731 Members of the HesA/MoeB/ThiF family of proteins (IPR000594 from INTERPRO) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees. The Escherichia coli ThiF and MoeB proteins are seemingly more closely related than the E. coli ThiF and Campylobacter (for example) ThiF. This entry represents the more widely distributed clade of ThiF proteins as found in E. coli..
Probab=94.52 E-value=0.057 Score=32.62 Aligned_cols=99 Identities=18% Similarity=0.197 Sum_probs=66.6
Q ss_pred CCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEE---------ECCCCCCCCHHHHHHHHC------C---
Q ss_conf 8822411787425425678999999819885758999559603---------078733266788977450------8---
Q gi|254780137|r 198 KKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLV---------YEGREKKFDKWKSVYAQK------S--- 259 (779)
Q Consensus 198 k~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli---------~~~r~~~~~~~~~~~a~~------~--- 259 (779)
T Consensus 17 ~rL~~s~VLiiGaGgLGs~~~~~LA~AGVG--~i~i~D~D~V~~SNLqRQ~Lf~e~Dv~~~~pK~e~aa~~l~~LN~~i~ 94 (210)
T TIGR02356 17 QRLLASHVLIIGAGGLGSPAALYLAAAGVG--TITIVDDDHVDLSNLQRQILFAEEDVGTLRPKVEAAAERLRELNSDIR 94 (210)
T ss_pred HHHHHCCEEEEEECHHHHHHHHHHHHCCCC--EEEEEECCEECHHHCHHHHHHCHHHHHCCCHHHHHHHHHHHHHCCCCE
T ss_conf 998608659997261456899999828883--789985167701012055430324420131589999999985388968
Q ss_pred --------CCCCHHHHCCCCC--EEEECCCCCCCCHHHHHHCC---CCCEEEE
Q ss_conf --------8988888605883--78625788778988997218---9977999
Q gi|254780137|r 260 --------GPKPLSETMNNAD--VFLGLSVAGALDPAILKFMA---EKPLIMV 299 (779)
Q Consensus 260 --------~~~~l~ea~~~ad--v~iG~S~~g~~t~e~v~~M~---~~PiIfa 299 (779)
T Consensus 95 v~a~~~~vt~~~~~~~i~~~DPdlVlDc~D-Nf~tryliNdaC~~~~~PlI~a 146 (210)
T TIGR02356 95 VTALKERVTAENLELLIENVDPDLVLDCTD-NFATRYLINDACQALGIPLISA 146 (210)
T ss_pred EEEEEECCCHHHHHHHHHCCCCCEEEECCC-CHHHHHHHHHHHHHHCCCEEEE
T ss_conf 998542027799999962389968961566-8778899999999847986999