HHsearch alignment for GI: 254780137 and conserved domain: cd05197
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=95.43 E-value=0.09 Score=31.24 Aligned_cols=113 Identities=19% Similarity=0.346 Sum_probs=64.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHC-----CCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCCC-------CCCHHHHCCC
Q ss_conf 1178742542567899999981-----988575899955960307873326678897745088-------9888886058
Q gi|254780137|r 203 IKIVTLGAGAAALACLNLLVTM-----GVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKSG-------PKPLSETMNN 270 (779)
Q Consensus 203 ~~iv~~GaGaAg~~~a~ll~~~-----g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~~-------~~~l~ea~~~ 270 (779)
T Consensus 1 mKI~iIGaGS~--~t~~lv~~l~~~~~~l~~~ei~L~DId----~erL~~~~~~a~~~~~~~~~~~~v~~ttd~~eAl~g 74 (425)
T cd05197 1 VKIAIIGGGSS--FTPELVSGLLKTPEELPISEVTLYDID----EERLDIILTIAKRYVEEVGADIKFEKTMDLEDAIID 74 (425)
T ss_pred CEEEEECCCHH--HHHHHHHHHHHCHHHCCCCEEEEECCC----HHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHCC
T ss_conf 97999898368--789999999838433788989998899----999999999999999961998389997899998568
Q ss_pred CCEEE------------------------EC--CC-CCCCC--------HHHH---HHCCCCCEEEEECCCCCCCCHHHH
Q ss_conf 83786------------------------25--78-87789--------8899---721899779991787200998899
Q gi|254780137|r 271 ADVFL------------------------GL--SV-AGALD--------PAIL---KFMAEKPLIMVLANPNPEAMPDEI 312 (779)
Q Consensus 271 adv~i------------------------G~--S~-~g~~t--------~e~v---~~M~~~PiIfaLsNP~pEi~p~~a 312 (779)
T Consensus 75 ADfVi~~irvGg~~~r~~De~IplkyGv~gqeT~G~GG~~~alRtIPv~l~ia~~i~e~cP~AwliNytNP~~ivt~al~ 154 (425)
T cd05197 75 ADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLSPDAWYLNFTNPAGEVTEAVR 154 (425)
T ss_pred CCEEEEEEEECCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHH
T ss_conf 99999988756705789998689875914443777889999984299999999999986998089973787899999999
Q ss_pred HHHCCCEEE
Q ss_conf 851898798
Q gi|254780137|r 313 KKVRPDAMI 321 (779)
Q Consensus 313 ~~~~g~aiv 321 (779)
T Consensus 155 ~~~~~~k~v 163 (425)
T cd05197 155 RYVPPEKAV 163 (425)
T ss_pred HHCCCCCEE
T ss_conf 748888489