HHsearch alignment for GI: 254780137 and conserved domain: cd05211
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=97.91 E-value=0.00064 Score=46.06 Aligned_cols=130 Identities=22% Similarity=0.245 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHCCCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCCCC---
Q ss_conf 99999999997098822411787425425678999999819885758999559603078733266788977450889---
Q gi|254780137|r 185 VTAATLNGMKLVGKKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKSGP--- 261 (779)
Q Consensus 185 ~lA~llnAl~~~gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~~~--- 261 (779)
T Consensus 6 v~~~~~~a~~~~~~~l~g~~vaVqGfGnVG~~~a~~l~~~Gak--vvavsD~~G~i~~~--~g~~~~~~~~~~~~~~~~~ 81 (217)
T cd05211 6 VVVAMKAAMKHLGDSLEGLTVAVQGLGNVGWGLAKKLAEEGGK--VLAVSDPDGYIYDP--GITTEELINYAVALGGSAR 81 (217)
T ss_pred HHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCE--EEEEECCCCEEECC--CCCCHHHHHHHHHHCCCCC
T ss_conf 9999999999769685799999989889999999999985998--99998578717789--9986999999998189653
Q ss_pred ------CCHHHHC-CCCCEEEECCCCCCCCHHHHHHCCCCCEEEEECC-CC-CCCCHHHHHHHCCCEEE
Q ss_conf ------8888860-5883786257887789889972189977999178-72-00998899851898798
Q gi|254780137|r 262 ------KPLSETM-NNADVFLGLSVAGALDPAILKFMAEKPLIMVLAN-PN-PEAMPDEIKKVRPDAMI 321 (779)
Q Consensus 262 ------~~l~ea~-~~adv~iG~S~~g~~t~e~v~~M~~~PiIfaLsN-P~-pEi~p~~a~~~~g~aiv 321 (779)
T Consensus 82 ~~~~~~~~~~~~~~~~~DIliPaAl~~~I~~~~a~~i~ak-~I~EgAN~P~t~e--a~~iL~~rgI~vi 147 (217)
T cd05211 82 VKVQDYFPGEAILGLDVDIFAPCALGNVIDLENAKKLKAK-VVAEGANNPTTDE--ALRILHERGIVVA 147 (217)
T ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHCCE-EEECCCCCCCCHH--HHHHHHHCCCEEE
T ss_conf 6665305986500367768964244588798999871772-8950678998978--9999997899894