HHsearch alignment for GI: 254780137 and conserved domain: cd05293
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.30 E-value=0.31 Score=27.52 Aligned_cols=105 Identities=16% Similarity=0.264 Sum_probs=63.2
Q ss_pred HCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCCC---CCCHHHHCCCCCEEEECC
Q ss_conf 41178742542567899999981988575899955960307873326678897745088---988888605883786257
Q gi|254780137|r 202 DIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKSG---PKPLSETMNNADVFLGLS 278 (779)
Q Consensus 202 ~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~~---~~~l~ea~~~adv~iG~S 278 (779)
T Consensus 3 r~Kv~IIGaG~VG~~~A~~l~~~~l~~-el~L~Di~~~~a~g~a~Dl~h~-~~~~~~~~v~~~~d~-~~~~~aDvVVitA 79 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLAD-ELVLVDVVEDKLKGEAMDLQHG-SAFLKNPKIEADKDY-SVTANSKVVIVTA 79 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCC-EEEEEECCCCCCHHHHHHHHHC-CCCCCCCEEEECCCH-HHHCCCCEEEECC
T ss_conf 886999897888999999999669988-7999938898332688886604-012798559937999-9968999999889
Q ss_pred C----CCCCCH------------HHHHH---CCCCCEEEEECCCCCCCCHH
Q ss_conf 8----877898------------89972---18997799917872009988
Q gi|254780137|r 279 V----AGALDP------------AILKF---MAEKPLIMVLANPNPEAMPD 310 (779)
Q Consensus 279 ~----~g~~t~------------e~v~~---M~~~PiIfaLsNP~pEi~p~ 310 (779)
T Consensus 80 G~~~k~g-~~R~dLl~~N~~I~~~i~~~i~~~~p~~ivivvsNPvDv~t~~ 129 (312)
T cd05293 80 GARQNEG-ESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVDIMTYV 129 (312)
T ss_pred CCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHH
T ss_conf 9999989-8889999988999999999988419984699668918999999