HHsearch alignment for GI: 254780137 and conserved domain: cd05312

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=100.00  E-value=0  Score=552.32  Aligned_cols=246  Identities=34%  Similarity=0.495  Sum_probs=216.8

Q ss_pred             CCCHHHHHHHHHHHHHHHHCCCHHHCEEEEECCCHHHHHHHHHHHHC----CC----CCCCEEEEECCCEEECCCCCCCC
Q ss_conf             72189999999999999709882241178742542567899999981----98----85758999559603078733266
Q gi|254780137|r  178 QHGTAVTVTAATLNGMKLVGKKFSDIKIVTLGAGAAALACLNLLVTM----GV----RRENIWVYDLEGLVYEGREKKFD  249 (779)
Q Consensus       178 ~qGTa~v~lA~llnAl~~~gk~l~~~~iv~~GaGaAg~~~a~ll~~~----g~----~~~~i~~~D~~Gli~~~r~~~~~  249 (779)
T Consensus         1 IQGTa~V~lA~linA~k~~gk~l~d~riv~~GAGsAg~gia~~l~~~~~~~G~~~eeA~~~i~~~D~~Gli~~~r~-dl~   79 (279)
T cd05312           1 IQGTAAVALAGLLAALRITGKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRK-DLT   79 (279)
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCHHHCEEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHCEEEEECCCCEEECCCC-CCH
T ss_conf             9478999999999999983998767379997975899999999999999859997886170999658875317999-864


Q ss_pred             HHHHHHHHCCC---CCCHHHHCCCC--CEEEECCC-CCCCCHHHHHHC---CCCCEEEEECCCCC--CCCHHHHH-HHCC
Q ss_conf             78897745088---98888860588--37862578-877898899721---89977999178720--09988998-5189
Q gi|254780137|r  250 KWKSVYAQKSG---PKPLSETMNNA--DVFLGLSV-AGALDPAILKFM---AEKPLIMVLANPNP--EAMPDEIK-KVRP  317 (779)
Q Consensus       250 ~~~~~~a~~~~---~~~l~ea~~~a--dv~iG~S~-~g~~t~e~v~~M---~~~PiIfaLsNP~p--Ei~p~~a~-~~~g  317 (779)
T Consensus        80 ~~k~~~a~~~~~~~~~~L~e~v~~~kp~vlIG~S~~~g~ft~e~v~~Ma~~~e~PIIFaLSNPt~~~E~~peda~~~t~G  159 (279)
T cd05312          80 PFKKPFARKDEEKEGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALSNPTSKAECTAEDAYKWTDG  159 (279)
T ss_pred             HHHHHHHHHCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHCCC
T ss_conf             99999987474568999999997248977998068989779999999984599977996379976678899999862269


Q ss_pred             CEEECCC----------CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCC
Q ss_conf             8798058----------878877435034556654567513730026789999999999872033136677413876766
Q gi|254780137|r  318 DAMICTG----------RSDFSNQVNNVLCFPYIFRGALDCGATAITEEMKVAAARAMAVLVRDVPPDVVFDNFAKESPV  387 (779)
Q Consensus       318 ~aivatG----------rs~~pnQ~NN~l~FPgif~Gal~~~A~~Itd~M~~aAa~alA~la~~~~~~~~~~~~~~~~~~  387 (779)
T Consensus       160 ~aivATGSpf~~v~~~Grs~~pnQ~NN~l~FPGi~~Gal~~~A~~Itd~M~~aAA~alA~~v~~~~--------------  225 (279)
T cd05312         160 RALFASGSPFPPVEYNGKTYVPGQGNNAYIFPGIGLGAILSGARHITDEMFLAAAEALASLVTDEE--------------  225 (279)
T ss_pred             CEEEEECCCCCCCCCCCEEEECCCCCEEEECCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHH--------------
T ss_conf             889983898776204895870798630213113678899806887899999999999986377632--------------


Q ss_pred             CCCCCCCCCCCCHH-HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf             67522366654677-86798888999874213223543225899999998620
Q gi|254780137|r  388 FGPNYLIPSPFDPN-LISYIAPAVAKAAEEAGVASSPIEDYEVYRDSLKRFSF  439 (779)
Q Consensus       388 ~g~~yiiP~~fd~r-~~~~va~AVa~aA~~sGvAr~pi~d~~~Y~~~L~~rl~  439 (779)
T Consensus       226 l~~~~i~P~~~~~r~vs~~VA~aVa~~A~~~GvA~~~~~-~~d~~~~i~~~mw  277 (279)
T cd05312         226 LARGRLYPPLSNIREISAQIAVAVAKYAYEEGLATRYPP-PEDLEEYVKSQMW  277 (279)
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC-HHHHHHHHHHCCC
T ss_conf             688873799723757479999999999998599888998-7899999997078