HHsearch alignment for GI: 254780137 and conserved domain: cd05312
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=100.00 E-value=0 Score=552.32 Aligned_cols=246 Identities=34% Similarity=0.495 Sum_probs=216.8
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHCEEEEECCCHHHHHHHHHHHHC----CC----CCCCEEEEECCCEEECCCCCCCC
Q ss_conf 72189999999999999709882241178742542567899999981----98----85758999559603078733266
Q gi|254780137|r 178 QHGTAVTVTAATLNGMKLVGKKFSDIKIVTLGAGAAALACLNLLVTM----GV----RRENIWVYDLEGLVYEGREKKFD 249 (779)
Q Consensus 178 ~qGTa~v~lA~llnAl~~~gk~l~~~~iv~~GaGaAg~~~a~ll~~~----g~----~~~~i~~~D~~Gli~~~r~~~~~ 249 (779)
T Consensus 1 IQGTa~V~lA~linA~k~~gk~l~d~riv~~GAGsAg~gia~~l~~~~~~~G~~~eeA~~~i~~~D~~Gli~~~r~-dl~ 79 (279)
T cd05312 1 IQGTAAVALAGLLAALRITGKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRK-DLT 79 (279)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCHHHCEEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHCEEEEECCCCEEECCCC-CCH
T ss_conf 9478999999999999983998767379997975899999999999999859997886170999658875317999-864
Q ss_pred HHHHHHHHCCC---CCCHHHHCCCC--CEEEECCC-CCCCCHHHHHHC---CCCCEEEEECCCCC--CCCHHHHH-HHCC
Q ss_conf 78897745088---98888860588--37862578-877898899721---89977999178720--09988998-5189
Q gi|254780137|r 250 KWKSVYAQKSG---PKPLSETMNNA--DVFLGLSV-AGALDPAILKFM---AEKPLIMVLANPNP--EAMPDEIK-KVRP 317 (779)
Q Consensus 250 ~~~~~~a~~~~---~~~l~ea~~~a--dv~iG~S~-~g~~t~e~v~~M---~~~PiIfaLsNP~p--Ei~p~~a~-~~~g 317 (779)
T Consensus 80 ~~k~~~a~~~~~~~~~~L~e~v~~~kp~vlIG~S~~~g~ft~e~v~~Ma~~~e~PIIFaLSNPt~~~E~~peda~~~t~G 159 (279)
T cd05312 80 PFKKPFARKDEEKEGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALSNPTSKAECTAEDAYKWTDG 159 (279)
T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHCCC
T ss_conf 99999987474568999999997248977998068989779999999984599977996379976678899999862269
Q ss_pred CEEECCC----------CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCC
Q ss_conf 8798058----------878877435034556654567513730026789999999999872033136677413876766
Q gi|254780137|r 318 DAMICTG----------RSDFSNQVNNVLCFPYIFRGALDCGATAITEEMKVAAARAMAVLVRDVPPDVVFDNFAKESPV 387 (779)
Q Consensus 318 ~aivatG----------rs~~pnQ~NN~l~FPgif~Gal~~~A~~Itd~M~~aAa~alA~la~~~~~~~~~~~~~~~~~~ 387 (779)
T Consensus 160 ~aivATGSpf~~v~~~Grs~~pnQ~NN~l~FPGi~~Gal~~~A~~Itd~M~~aAA~alA~~v~~~~-------------- 225 (279)
T cd05312 160 RALFASGSPFPPVEYNGKTYVPGQGNNAYIFPGIGLGAILSGARHITDEMFLAAAEALASLVTDEE-------------- 225 (279)
T ss_pred CEEEEECCCCCCCCCCCEEEECCCCCEEEECCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHH--------------
T ss_conf 889983898776204895870798630213113678899806887899999999999986377632--------------
Q ss_pred CCCCCCCCCCCCHH-HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 67522366654677-86798888999874213223543225899999998620
Q gi|254780137|r 388 FGPNYLIPSPFDPN-LISYIAPAVAKAAEEAGVASSPIEDYEVYRDSLKRFSF 439 (779)
Q Consensus 388 ~g~~yiiP~~fd~r-~~~~va~AVa~aA~~sGvAr~pi~d~~~Y~~~L~~rl~ 439 (779)
T Consensus 226 l~~~~i~P~~~~~r~vs~~VA~aVa~~A~~~GvA~~~~~-~~d~~~~i~~~mw 277 (279)
T cd05312 226 LARGRLYPPLSNIREISAQIAVAVAKYAYEEGLATRYPP-PEDLEEYVKSQMW 277 (279)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC-HHHHHHHHHHCCC
T ss_conf 688873799723757479999999999998599888998-7899999997078