Query gi|254780137|ref|YP_003064550.1| malic enzyme [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 779
No_of_seqs 381 out of 2285
Neff 5.3
Searched_HMMs 39220
Date Mon May 23 00:07:24 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780137.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK07232 malic enzyme; Reviewe 100.0 0 0 2208.9 77.9 753 17-772 1-753 (753)
2 PRK12862 malic enzyme; Reviewe 100.0 0 0 2208.7 78.0 758 14-774 4-761 (761)
3 PRK12861 malic enzyme; Reviewe 100.0 0 0 2199.2 77.6 756 16-773 1-761 (762)
4 COG0281 SfcA Malic enzyme [Ene 100.0 0 0 1138.5 35.3 417 15-446 12-431 (432)
5 PRK13529 malate dehydrogenase; 100.0 0 0 799.1 27.1 366 48-433 98-550 (563)
6 PTZ00317 malic enzyme; Provisi 100.0 0 0 789.3 27.3 365 48-430 97-548 (570)
7 PRK05632 phosphate acetyltrans 100.0 0 0 773.2 35.8 329 437-774 373-701 (702)
8 pfam01515 PTA_PTB Phosphate ac 100.0 0 0 742.3 36.5 318 443-767 1-319 (319)
9 PRK09653 eutD phosphotransacet 100.0 0 0 733.9 36.8 323 443-773 2-324 (324)
10 COG0280 Pta Phosphotransacetyl 100.0 0 0 732.2 33.9 324 444-773 1-326 (327)
11 KOG1257 consensus 100.0 0 0 688.4 25.8 368 46-432 109-557 (582)
12 TIGR00651 pta phosphate acetyl 100.0 0 0 685.1 24.2 302 460-767 1-322 (322)
13 PRK05805 phosphate butyryltran 100.0 0 0 605.9 31.6 291 445-772 5-300 (301)
14 PRK11890 phosphate acetyltrans 100.0 0 0 596.9 32.6 298 443-776 8-309 (312)
15 PRK07742 phosphate butyryltran 100.0 0 0 595.7 30.2 293 444-772 2-299 (299)
16 cd05312 NAD_bind_1_malic_enz N 100.0 0 0 552.3 21.6 246 178-439 1-277 (279)
17 cd05311 NAD_bind_2_malic_enz N 100.0 0 0 541.3 21.2 222 178-414 1-226 (226)
18 pfam03949 Malic_M Malic enzyme 100.0 0 0 524.8 20.1 223 178-415 1-255 (255)
19 cd00762 NAD_bind_malic_enz NAD 100.0 0 0 509.6 21.0 222 178-414 1-254 (254)
20 TIGR02706 P_butyryltrans phosp 100.0 0 0 464.3 22.7 288 446-770 2-295 (295)
21 PRK08190 bifunctional enoyl-Co 100.0 0 0 432.4 31.9 301 443-777 162-464 (465)
22 TIGR03270 methan_mark_4 putati 100.0 1.3E-31 3.3E-36 237.1 12.4 186 558-766 13-202 (202)
23 pfam00390 malic Malic enzyme, 100.0 5.1E-31 1.3E-35 233.1 6.9 118 48-166 18-182 (182)
24 TIGR02709 branched_ptb branche 100.0 1.7E-27 4.3E-32 208.8 13.6 266 459-767 2-269 (271)
25 PRK05331 putative glycerol-3-p 99.8 2.9E-17 7.5E-22 138.1 23.5 260 468-767 16-315 (317)
26 pfam02504 FA_synthesis Fatty a 99.8 4.7E-16 1.2E-20 129.8 25.1 263 468-772 15-317 (322)
27 PRK13845 putative glycerol-3-p 99.8 7E-16 1.8E-20 128.6 24.3 279 455-771 90-419 (437)
28 PRK13846 putative glycerol-3-p 99.8 6.5E-16 1.7E-20 128.8 23.7 254 478-773 31-306 (316)
29 COG0416 PlsX Fatty acid/phosph 99.8 4.3E-15 1.1E-19 123.1 24.2 267 468-773 16-322 (338)
30 TIGR00182 plsX fatty acid/phos 99.7 3E-14 7.7E-19 117.3 18.1 265 468-773 15-324 (344)
31 PRK02848 consensus 99.1 4.8E-08 1.2E-12 74.5 18.2 291 456-776 6-338 (341)
32 PRK00232 pdxA 4-hydroxythreoni 99.1 1.4E-07 3.6E-12 71.3 19.7 274 457-759 4-307 (334)
33 PRK03743 pdxA 4-hydroxythreoni 99.0 1.8E-07 4.5E-12 70.6 17.6 273 458-760 4-306 (333)
34 PRK05312 pdxA 4-hydroxythreoni 98.9 8.1E-07 2.1E-11 66.1 19.8 277 458-759 4-310 (336)
35 cd05191 NAD_bind_amino_acid_DH 98.8 2.1E-08 5.3E-13 77.0 8.8 85 180-301 1-86 (86)
36 pfam04166 PdxA Pyridoxal phosp 98.8 1.1E-07 2.7E-12 72.1 12.1 249 481-759 7-280 (299)
37 PRK03877 consensus 98.8 1.8E-07 4.5E-12 70.6 13.1 271 459-760 4-305 (328)
38 PRK01909 pdxA 4-hydroxythreoni 98.8 9.1E-06 2.3E-10 58.8 21.2 267 456-760 4-302 (329)
39 PRK02746 pdxA 4-hydroxythreoni 98.8 2.5E-06 6.4E-11 62.7 17.2 274 458-760 2-309 (332)
40 COG4002 Predicted phosphotrans 98.7 1.2E-07 3.2E-12 71.7 9.1 183 559-764 59-248 (256)
41 PRK04607 consensus 98.7 3.2E-06 8.3E-11 61.9 15.5 277 456-760 4-306 (330)
42 PRK03367 consensus 98.5 7.3E-06 1.9E-10 59.5 13.5 272 457-760 4-304 (329)
43 PRK04507 consensus 98.5 3.1E-06 7.8E-11 62.1 11.5 267 458-760 4-299 (323)
44 PRK03371 pdxA 4-hydroxythreoni 98.3 6.7E-05 1.7E-09 52.8 14.2 274 457-759 2-304 (326)
45 PRK03946 pdxA 4-hydroxythreoni 98.3 0.00042 1.1E-08 47.3 17.5 256 457-760 1-281 (304)
46 COG1995 PdxA Pyridoxal phospha 98.0 0.0012 3.1E-08 44.1 16.0 262 458-753 4-297 (332)
47 PRK08306 dipicolinate synthase 98.0 0.00015 3.8E-09 50.4 10.5 230 68-325 14-265 (296)
48 cd01076 NAD_bind_1_Glu_DH NAD( 97.9 0.00075 1.9E-08 45.6 13.3 137 178-321 7-156 (227)
49 cd05211 NAD_bind_Glu_Leu_Phe_V 97.9 0.00064 1.6E-08 46.1 13.0 130 185-321 6-147 (217)
50 pfam01262 AlaDh_PNT_C Alanine 97.8 9.8E-05 2.5E-09 51.7 6.7 94 200-303 18-123 (150)
51 pfam00208 ELFV_dehydrog Glutam 97.7 0.0032 8.3E-08 41.2 13.8 136 179-321 8-160 (237)
52 PRK00258 aroE shikimate 5-dehy 97.7 0.00069 1.8E-08 45.9 10.1 228 85-332 1-248 (275)
53 pfam01488 Shikimate_DH Shikima 97.7 0.00012 3.1E-09 51.1 6.0 97 199-304 9-111 (134)
54 PRK09424 pntA NAD(P) transhydr 97.6 0.00046 1.2E-08 47.1 8.4 252 67-339 18-335 (510)
55 PRK05476 S-adenosyl-L-homocyst 97.6 0.0011 2.8E-08 44.5 10.3 122 174-313 183-307 (427)
56 COG0373 HemA Glutamyl-tRNA red 97.5 0.00071 1.8E-08 45.8 8.4 175 104-304 85-277 (414)
57 pfam05221 AdoHcyase S-adenosyl 97.5 0.0017 4.3E-08 43.2 10.0 121 175-313 186-309 (430)
58 cd00401 AdoHcyase S-adenosyl-L 97.4 0.0037 9.5E-08 40.8 10.8 122 174-313 177-301 (413)
59 PTZ00075 S-adenosyl-L-homocyst 97.3 0.0035 9E-08 41.0 9.9 127 169-313 214-353 (476)
60 cd05313 NAD_bind_2_Glu_DH NAD( 97.3 0.017 4.3E-07 36.3 13.5 135 181-321 17-174 (254)
61 TIGR01318 gltD_gamma_fam gluta 97.3 0.00018 4.5E-09 50.0 2.9 80 195-279 136-238 (480)
62 PRK09414 glutamate dehydrogena 97.2 0.02 5.2E-07 35.7 13.1 181 117-307 126-353 (446)
63 PRK00045 hemA glutamyl-tRNA re 97.2 0.00097 2.5E-08 44.8 5.9 169 110-304 98-283 (429)
64 cd05213 NAD_bind_Glutamyl_tRNA 97.0 0.0048 1.2E-07 40.1 7.8 170 109-304 93-276 (311)
65 PTZ00079 NADP-specific glutama 97.0 0.036 9.1E-07 34.0 13.8 179 117-307 149-376 (469)
66 cd01065 NAD_bind_Shikimate_DH 97.0 0.0026 6.6E-08 41.9 6.2 89 187-281 4-92 (155)
67 PRK11790 D-3-phosphoglycerate 97.0 0.023 5.9E-07 35.3 11.0 208 108-342 43-294 (409)
68 PRK13940 glutamyl-tRNA reducta 96.9 0.0032 8.1E-08 41.3 6.3 168 108-304 95-276 (414)
69 TIGR01035 hemA glutamyl-tRNA r 96.7 0.0048 1.2E-07 40.0 5.8 169 111-304 100-296 (436)
70 pfam00670 AdoHcyase_NAD S-aden 96.6 0.025 6.5E-07 35.1 9.1 114 178-312 2-121 (162)
71 cd01075 NAD_bind_Leu_Phe_Val_D 96.5 0.071 1.8E-06 31.9 13.5 125 181-321 5-136 (200)
72 PRK12749 quinate/shikimate deh 96.5 0.013 3.3E-07 37.1 7.1 185 85-281 3-207 (288)
73 COG0499 SAM1 S-adenosylhomocys 96.4 0.068 1.7E-06 32.1 10.4 225 34-311 70-306 (420)
74 PRK09310 aroDE bifunctional 3- 96.4 0.041 1.1E-06 33.6 9.0 25 118-144 79-103 (477)
75 PRK10792 bifunctional 5,10-met 96.4 0.09 2.3E-06 31.3 12.5 154 115-300 59-230 (288)
76 cd05292 LDH_2 A subgroup of L- 96.4 0.035 8.9E-07 34.1 8.5 119 203-324 1-141 (308)
77 pfam02056 Glyco_hydro_4 Family 96.1 0.025 6.4E-07 35.1 6.7 114 204-321 1-164 (183)
78 TIGR02853 spore_dpaA dipicolin 96.1 0.12 3.1E-06 30.3 11.3 175 132-326 85-266 (288)
79 COG0686 Ald Alanine dehydrogen 96.1 0.011 2.9E-07 37.5 4.8 203 68-298 19-265 (371)
80 PRK12549 shikimate 5-dehydroge 96.1 0.031 7.8E-07 34.5 7.0 157 112-281 27-203 (284)
81 PRK12548 shikimate 5-dehydroge 96.0 0.017 4.3E-07 36.2 5.3 184 85-281 5-210 (289)
82 PRK00257 erythronate-4-phospha 95.9 0.15 3.8E-06 29.7 11.7 158 117-299 36-205 (379)
83 pfam02826 2-Hacid_dh_C D-isome 95.8 0.07 1.8E-06 32.0 7.9 95 195-304 29-128 (176)
84 COG0334 GdhA Glutamate dehydro 95.8 0.17 4.2E-06 29.4 13.9 125 187-317 192-328 (411)
85 cd01078 NAD_bind_H4MPT_DH NADP 95.8 0.11 2.9E-06 30.6 8.8 121 181-309 7-136 (194)
86 cd05290 LDH_3 A subgroup of L- 95.7 0.065 1.7E-06 32.2 7.5 119 204-324 1-144 (307)
87 cd05298 GH4_GlvA_pagL_like Gly 95.7 0.043 1.1E-06 33.5 6.6 113 203-321 1-163 (437)
88 PRK00676 hemA glutamyl-tRNA re 95.7 0.18 4.7E-06 29.1 9.9 165 110-304 91-264 (338)
89 cd05297 GH4_alpha_glucosidase_ 95.6 0.062 1.6E-06 32.4 7.0 114 203-321 1-164 (423)
90 cd05197 GH4_glycoside_hydrolas 95.4 0.09 2.3E-06 31.2 7.3 113 203-321 1-163 (425)
91 PRK12550 shikimate 5-dehydroge 95.2 0.26 6.7E-06 28.0 9.8 162 111-303 29-219 (272)
92 PRK13581 D-3-phosphoglycerate 95.1 0.27 6.9E-06 27.9 11.2 210 109-342 31-278 (524)
93 cd05296 GH4_P_beta_glucosidase 95.1 0.1 2.7E-06 30.8 6.8 115 203-321 1-163 (419)
94 cd05212 NAD_bind_m-THF_DH_Cycl 95.0 0.3 7.6E-06 27.7 9.6 88 185-301 11-100 (140)
95 PTZ00082 L-lactate dehydrogena 95.0 0.08 2E-06 31.6 5.9 108 200-309 5-137 (322)
96 TIGR03451 mycoS_dep_FDH mycoth 95.0 0.088 2.2E-06 31.3 6.1 103 187-304 163-279 (358)
97 COG0169 AroE Shikimate 5-dehyd 94.9 0.084 2.1E-06 31.4 5.9 201 103-325 21-249 (283)
98 pfam02423 OCD_Mu_crystall Orni 94.8 0.33 8.4E-06 27.4 9.1 135 181-334 109-253 (312)
99 PRK00066 ldh L-lactate dehydro 94.7 0.16 4E-06 29.6 6.9 122 200-324 4-147 (315)
100 PRK08293 3-hydroxybutyryl-CoA 94.7 0.24 6E-06 28.3 7.6 95 202-299 3-117 (288)
101 PRK12475 thiamine/molybdopteri 94.6 0.11 2.8E-06 30.7 5.8 41 198-240 20-60 (337)
102 PRK13243 glyoxylate reductase; 94.6 0.37 9.4E-06 27.0 13.2 236 108-371 35-314 (333)
103 PRK00141 murD UDP-N-acetylmura 94.6 0.28 7.2E-06 27.8 7.9 85 204-297 19-104 (476)
104 TIGR02356 adenyl_thiF thiazole 94.5 0.057 1.5E-06 32.6 4.2 99 198-299 17-146 (210)
105 cd01080 NAD_bind_m-THF_DH_Cycl 94.4 0.4 1E-05 26.8 9.1 92 179-299 21-114 (168)
106 PRK11880 pyrroline-5-carboxyla 94.4 0.4 1E-05 26.7 8.7 226 203-482 3-246 (267)
107 cd05293 LDH_1 A subgroup of L- 94.3 0.31 8E-06 27.5 7.6 105 202-310 3-129 (312)
108 pfam02882 THF_DHG_CYH_C Tetrah 94.1 0.46 1.2E-05 26.3 9.1 91 180-299 14-106 (159)
109 pfam01210 NAD_Gly3P_dh_N NAD-d 94.0 0.35 8.9E-06 27.2 7.4 85 203-292 1-91 (159)
110 PRK06141 ornithine cyclodeamin 93.9 0.42 1.1E-05 26.6 7.6 111 192-314 116-235 (313)
111 PRK03369 murD UDP-N-acetylmura 93.9 0.4 1E-05 26.8 7.4 86 202-297 12-98 (487)
112 PRK09260 3-hydroxybutyryl-CoA 93.9 0.52 1.3E-05 26.0 9.0 94 203-299 3-115 (289)
113 PRK09117 consensus 93.8 0.53 1.4E-05 25.9 8.6 93 203-299 3-114 (282)
114 PRK06487 glycerate dehydrogena 93.8 0.53 1.4E-05 25.9 14.9 182 162-369 82-308 (317)
115 TIGR00507 aroE shikimate 5-deh 93.7 0.14 3.7E-06 29.9 4.8 107 188-301 106-226 (286)
116 PRK08762 molybdopterin biosynt 93.6 0.26 6.7E-06 28.0 6.1 100 198-300 134-260 (379)
117 cd00757 ThiF_MoeB_HesA_family 93.5 0.31 7.8E-06 27.6 6.4 41 197-239 16-56 (228)
118 TIGR00557 pdxA 4-hydroxythreon 93.5 0.6 1.5E-05 25.6 17.9 270 458-753 2-296 (325)
119 PRK05690 molybdopterin biosynt 93.5 0.24 6.2E-06 28.3 5.8 102 197-301 27-155 (245)
120 KOG0029 consensus 93.4 0.13 3.4E-06 30.1 4.4 39 199-240 12-50 (501)
121 COG3288 PntA NAD/NADP transhyd 93.4 0.084 2.1E-06 31.5 3.3 148 180-330 132-312 (356)
122 PRK08644 thiamine biosynthesis 93.3 0.17 4.3E-06 29.3 4.8 42 197-240 22-63 (209)
123 cd00650 LDH_MDH_like NAD-depen 93.3 0.43 1.1E-05 26.6 6.8 103 205-308 1-126 (263)
124 COG5322 Predicted dehydrogenas 93.3 0.48 1.2E-05 26.2 7.0 152 170-355 135-292 (351)
125 cd01337 MDH_glyoxysomal_mitoch 93.2 0.66 1.7E-05 25.3 7.7 100 203-306 1-122 (310)
126 TIGR03366 HpnZ_proposed putati 93.2 0.67 1.7E-05 25.2 10.1 122 185-322 105-242 (280)
127 PTZ00117 malate dehydrogenase; 93.2 0.5 1.3E-05 26.1 7.0 103 203-308 2-125 (313)
128 PRK05396 tdh L-threonine 3-deh 93.2 0.41 1.1E-05 26.7 6.5 34 201-236 163-196 (341)
129 COG1486 CelF Alpha-galactosida 93.1 0.53 1.4E-05 25.9 7.0 112 201-316 2-161 (442)
130 TIGR01381 E1_like_apg7 E1-like 93.0 0.1 2.5E-06 30.9 3.2 109 200-313 346-479 (689)
131 PRK09880 L-idonate 5-dehydroge 93.0 0.42 1.1E-05 26.6 6.4 55 457-519 170-224 (343)
132 PRK10083 putative dehydrogenas 93.0 0.53 1.3E-05 25.9 6.9 39 465-503 168-207 (339)
133 PRK06407 ornithine cyclodeamin 93.0 0.71 1.8E-05 25.0 12.7 127 180-321 98-234 (302)
134 PRK07634 pyrroline-5-carboxyla 92.9 0.53 1.3E-05 25.9 6.7 180 200-423 2-201 (245)
135 cd05291 HicDH_like L-2-hydroxy 92.8 0.48 1.2E-05 26.3 6.5 104 203-308 1-124 (306)
136 PRK01438 murD UDP-N-acetylmura 92.8 0.6 1.5E-05 25.6 7.0 89 199-297 11-105 (481)
137 TIGR00936 ahcY adenosylhomocys 92.7 0.7 1.8E-05 25.1 7.2 230 34-311 66-308 (422)
138 pfam00056 Ldh_1_N lactate/mala 92.7 0.4 1E-05 26.8 5.9 109 203-313 1-130 (142)
139 cd00300 LDH_like L-lactate deh 92.7 0.62 1.6E-05 25.4 6.9 118 205-324 1-140 (300)
140 COG0111 SerA Phosphoglycerate 92.6 0.79 2E-05 24.7 10.8 169 112-302 39-234 (324)
141 KOG0743 consensus 92.2 0.2 5E-06 28.9 3.8 16 414-429 204-219 (457)
142 PRK06223 malate dehydrogenase; 92.0 0.41 1E-05 26.7 5.3 105 203-308 1-125 (312)
143 PTZ00325 malate dehydrogenase; 92.0 0.94 2.4E-05 24.2 7.2 99 203-305 2-121 (313)
144 PRK01710 murD UDP-N-acetylmura 91.9 0.76 1.9E-05 24.8 6.6 108 200-325 12-125 (458)
145 pfam00899 ThiF ThiF family. Th 91.9 0.7 1.8E-05 25.1 6.4 36 202-239 1-36 (134)
146 cd01966 Nitrogenase_NifN_1 Nit 91.8 0.99 2.5E-05 24.1 7.5 90 388-494 245-337 (417)
147 PRK09754 phenylpropionate diox 91.7 0.36 9.1E-06 27.1 4.7 45 200-245 1-45 (400)
148 cd01339 LDH-like_MDH L-lactate 91.7 0.47 1.2E-05 26.3 5.3 102 205-309 1-123 (300)
149 PRK06130 3-hydroxybutyryl-CoA 91.6 0.82 2.1E-05 24.6 6.4 32 203-237 6-37 (310)
150 PRK08410 2-hydroxyacid dehydro 91.3 1.1 2.8E-05 23.7 11.3 123 163-303 80-234 (311)
151 PRK05808 3-hydroxybutyryl-CoA 91.2 1.1 2.9E-05 23.7 8.4 33 202-237 3-35 (282)
152 cd01079 NAD_bind_m-THF_DH NAD 91.1 1.1 2.8E-05 23.8 6.7 108 185-300 36-155 (197)
153 PRK05597 molybdopterin biosynt 91.1 0.93 2.4E-05 24.2 6.3 103 198-303 24-153 (355)
154 PRK13984 putative oxidoreducta 91.0 0.75 1.9E-05 24.9 5.8 42 201-245 282-327 (604)
155 COG0190 FolD 5,10-methylene-te 90.8 1.2 3.1E-05 23.4 11.5 196 79-313 30-247 (283)
156 KOG0685 consensus 90.8 0.37 9.3E-06 27.0 4.0 94 197-293 16-129 (498)
157 PRK07688 thiamine/molybdopteri 90.7 0.32 8.2E-06 27.4 3.7 41 198-240 20-60 (339)
158 TIGR00050 rRNA_methyl_1 RNA me 90.4 0.93 2.4E-05 24.3 5.8 72 201-281 3-87 (253)
159 PRK05086 malate dehydrogenase; 90.3 1.4 3.5E-05 23.1 7.7 103 203-309 1-126 (312)
160 PRK10309 galactitol-1-phosphat 90.1 1.3 3.4E-05 23.2 6.4 46 457-503 161-206 (347)
161 TIGR03376 glycerol3P_DH glycer 89.9 0.64 1.6E-05 25.4 4.7 96 204-301 1-116 (342)
162 COG0039 Mdh Malate/lactate deh 89.9 1.4 3.6E-05 23.0 6.4 105 203-309 1-126 (313)
163 PRK08291 ornithine cyclodeamin 89.9 1.5 3.7E-05 22.9 12.4 211 174-422 105-327 (330)
164 PRK12809 putative oxidoreducta 89.7 1.1 2.8E-05 23.8 5.7 42 201-245 309-354 (639)
165 PRK09496 trkA potassium transp 89.6 0.19 4.9E-06 29.0 1.8 92 203-304 1-103 (455)
166 PRK07660 consensus 89.4 1.6 4E-05 22.7 9.2 33 202-237 3-35 (283)
167 PRK01713 ornithine carbamoyltr 89.3 1.6 4.1E-05 22.6 12.4 109 160-276 113-231 (334)
168 pfam07992 Pyr_redox_2 Pyridine 89.3 0.68 1.7E-05 25.2 4.4 34 204-240 1-34 (277)
169 cd05294 LDH-like_MDH_nadp A la 89.2 1.6 4.2E-05 22.6 9.5 119 203-324 1-146 (309)
170 PRK08223 hypothetical protein; 89.0 0.92 2.3E-05 24.3 4.9 41 198-240 23-63 (287)
171 PRK13512 coenzyme A disulfide 89.0 0.89 2.3E-05 24.4 4.8 42 203-245 2-43 (438)
172 KOG0069 consensus 88.9 1.6 4.1E-05 22.6 6.1 139 197-349 157-310 (336)
173 PRK07878 molybdopterin biosynt 88.9 1 2.6E-05 24.0 5.1 102 197-301 37-165 (392)
174 PRK12480 D-lactate dehydrogena 88.8 1.7 4.4E-05 22.4 13.0 94 195-304 139-237 (330)
175 PRK07411 hypothetical protein; 88.6 1.7 4.3E-05 22.5 6.0 131 149-302 5-162 (390)
176 PRK08229 2-dehydropantoate 2-r 88.6 1.8 4.5E-05 22.3 7.2 95 203-304 3-110 (341)
177 PRK06823 ornithine cyclodeamin 88.6 1.8 4.6E-05 22.3 9.3 141 174-333 101-251 (315)
178 cd01486 Apg7 Apg7 is an E1-lik 88.4 0.78 2E-05 24.8 4.2 36 204-241 1-36 (307)
179 PRK03806 murD UDP-N-acetylmura 88.4 0.82 2.1E-05 24.6 4.3 87 199-297 3-93 (438)
180 PRK07208 hypothetical protein; 88.4 0.86 2.2E-05 24.5 4.4 34 201-237 2-35 (474)
181 COG2333 ComEC Predicted hydrol 88.1 1.5 3.8E-05 22.9 5.4 32 641-676 229-260 (293)
182 PRK00711 D-amino acid dehydrog 87.8 1 2.6E-05 24.0 4.5 34 203-239 1-34 (416)
183 KOG1495 consensus 87.8 1.3 3.2E-05 23.3 5.0 124 198-324 16-162 (332)
184 PRK02472 murD UDP-N-acetylmura 87.7 0.91 2.3E-05 24.3 4.2 36 199-237 6-41 (450)
185 PRK07236 hypothetical protein; 87.7 1.1 2.7E-05 23.9 4.5 37 199-238 3-39 (386)
186 PRK01390 murD UDP-N-acetylmura 87.6 0.95 2.4E-05 24.2 4.2 118 601-761 322-440 (457)
187 PRK07530 3-hydroxybutyryl-CoA 87.5 2.1 5.3E-05 21.8 8.6 32 203-237 5-36 (292)
188 KOG1370 consensus 87.4 2.1 5.4E-05 21.8 7.8 131 144-308 175-308 (434)
189 KOG2337 consensus 87.3 0.86 2.2E-05 24.5 3.9 42 200-243 338-379 (669)
190 TIGR01813 flavo_cyto_c flavocy 87.3 0.99 2.5E-05 24.1 4.2 275 205-505 2-378 (487)
191 pfam02254 TrkA_N TrkA-N domain 87.2 0.43 1.1E-05 26.5 2.3 89 205-304 1-99 (115)
192 PRK08328 hypothetical protein; 87.1 0.75 1.9E-05 24.9 3.5 39 197-237 22-60 (230)
193 cd01485 E1-1_like Ubiquitin ac 87.0 0.88 2.3E-05 24.4 3.8 42 197-240 14-55 (198)
194 PRK00856 pyrB aspartate carbam 86.9 2.2 5.7E-05 21.6 11.2 147 162-334 114-288 (304)
195 PRK02006 murD UDP-N-acetylmura 86.9 1.2 3.1E-05 23.5 4.4 36 199-237 4-39 (501)
196 TIGR00518 alaDH alanine dehydr 86.6 1.7 4.3E-05 22.5 5.0 95 200-304 166-271 (372)
197 cd01492 Aos1_SUMO Ubiquitin ac 86.5 0.98 2.5E-05 24.1 3.8 133 197-342 16-155 (197)
198 PRK06932 glycerate dehydrogena 86.5 2.4 6E-05 21.5 7.5 123 163-304 82-236 (314)
199 cd00755 YgdL_like Family of ac 86.5 0.92 2.3E-05 24.3 3.6 115 198-321 7-131 (231)
200 PRK06436 glycerate dehydrogena 86.5 2.4 6E-05 21.5 7.7 151 197-370 117-281 (303)
201 PRK06476 pyrroline-5-carboxyla 86.4 1.7 4.2E-05 22.5 4.9 71 203-280 1-71 (255)
202 PRK07233 hypothetical protein; 86.4 1.2 3.2E-05 23.4 4.3 33 204-239 1-33 (430)
203 COG2390 DeoR Transcriptional r 86.3 2.4 6.1E-05 21.4 11.0 105 153-260 62-171 (321)
204 PRK06834 hypothetical protein; 86.2 1.3 3.3E-05 23.3 4.3 55 200-257 1-57 (488)
205 pfam03446 NAD_binding_2 NAD bi 86.1 2.5 6.3E-05 21.3 7.0 100 203-314 2-108 (163)
206 PRK12769 putative oxidoreducta 86.1 1.3 3.3E-05 23.3 4.2 42 201-245 326-371 (654)
207 COG0569 TrkA K+ transport syst 86.1 0.38 9.6E-06 26.9 1.5 70 203-282 1-78 (225)
208 PRK07494 2-octaprenyl-6-methox 86.0 2.3 5.8E-05 21.6 5.5 49 201-252 4-52 (386)
209 PRK12562 ornithine carbamoyltr 85.7 2.6 6.6E-05 21.2 9.9 109 160-276 112-231 (334)
210 TIGR01763 MalateDH_bact malate 85.6 2.6 6.6E-05 21.2 7.6 102 203-309 2-129 (308)
211 PRK09564 coenzyme A disulfide 85.6 1.9 4.7E-05 22.2 4.8 41 203-244 1-41 (443)
212 COG2072 TrkA Predicted flavopr 85.6 1.5 3.9E-05 22.7 4.4 38 201-240 7-44 (443)
213 COG0578 GlpA Glycerol-3-phosph 85.5 2.6 6.7E-05 21.2 6.3 89 197-302 7-102 (532)
214 COG1712 Predicted dinucleotide 85.5 2.6 6.6E-05 21.2 5.6 114 203-324 1-120 (255)
215 COG3349 Uncharacterized conser 85.5 1.4 3.6E-05 23.0 4.2 31 203-236 1-31 (485)
216 PRK08294 phenol 2-monooxygenas 85.4 2.4 6.1E-05 21.4 5.3 53 200-255 30-84 (634)
217 PRK06847 hypothetical protein; 85.3 1.6 4.2E-05 22.5 4.4 33 203-238 5-37 (375)
218 PRK06753 hypothetical protein; 85.3 1.5 3.9E-05 22.7 4.3 36 203-241 1-36 (373)
219 PRK07531 bifunctional 3-hydrox 85.1 2.7 7E-05 21.0 6.2 105 203-312 3-122 (489)
220 TIGR03169 Nterm_to_SelD pyridi 85.1 1.2 3.1E-05 23.4 3.7 36 204-239 1-36 (364)
221 PRK12770 putative glutamate sy 84.6 1.7 4.5E-05 22.4 4.3 34 201-237 16-49 (350)
222 PRK05868 hypothetical protein; 84.5 1.9 4.8E-05 22.1 4.5 38 203-243 2-39 (372)
223 pfam00743 FMO-like Flavin-bind 84.5 1.9 4.8E-05 22.1 4.5 32 203-237 2-33 (532)
224 COG0240 GpsA Glycerol-3-phosph 84.5 1.2 3.1E-05 23.4 3.5 116 203-324 2-134 (329)
225 PRK04284 ornithine carbamoyltr 84.5 2.9 7.4E-05 20.8 13.4 134 132-276 88-230 (332)
226 PRK06185 hypothetical protein; 84.3 2.8 7.2E-05 20.9 5.3 52 200-254 4-56 (409)
227 pfam01266 DAO FAD dependent ox 84.2 1.8 4.6E-05 22.3 4.2 34 204-240 1-34 (309)
228 TIGR02032 GG-red-SF geranylger 84.2 1.5 3.9E-05 22.8 3.9 33 205-240 3-35 (343)
229 PRK00683 murD UDP-N-acetylmura 83.9 3.1 7.8E-05 20.7 6.8 116 602-761 283-398 (418)
230 COG0644 FixC Dehydrogenases (f 83.8 1.9 4.9E-05 22.1 4.3 36 202-240 3-38 (396)
231 PRK07588 hypothetical protein; 83.8 2 5.2E-05 21.9 4.4 35 203-240 1-35 (391)
232 PRK00094 gpsA NAD(P)H-dependen 83.6 1 2.6E-05 23.9 2.8 83 203-291 2-91 (325)
233 TIGR01372 soxA sarcosine oxida 83.5 1.8 4.5E-05 22.3 4.0 43 204-249 178-224 (1026)
234 PRK08605 D-lactate dehydrogena 83.5 3.2 8.2E-05 20.5 12.8 169 112-304 39-239 (332)
235 TIGR03467 HpnE squalene-associ 83.4 1.9 4.9E-05 22.1 4.1 33 205-240 1-33 (430)
236 COG1052 LdhA Lactate dehydroge 83.4 3.2 8.2E-05 20.5 6.9 95 194-302 138-237 (324)
237 PRK08850 2-octaprenyl-6-methox 83.3 3.2 8.1E-05 20.6 5.2 35 200-237 2-36 (405)
238 PRK13771 putative alcohol dehy 83.3 3.2 8.3E-05 20.5 7.7 62 171-236 132-195 (332)
239 cd01487 E1_ThiF_like E1_ThiF_l 83.3 2.2 5.5E-05 21.7 4.3 35 204-240 1-35 (174)
240 PRK06126 hypothetical protein; 83.0 2.2 5.7E-05 21.6 4.3 54 198-254 3-57 (545)
241 KOG0452 consensus 82.9 3 7.6E-05 20.7 5.0 74 410-490 695-775 (892)
242 COG2423 Predicted ornithine cy 82.8 3.4 8.7E-05 20.4 11.7 134 181-333 110-254 (330)
243 PRK05225 ketol-acid reductoiso 82.5 3.3 8.5E-05 20.4 5.1 99 199-304 34-144 (489)
244 PRK12810 gltD glutamate syntha 82.5 2.3 6E-05 21.5 4.3 40 201-243 142-185 (472)
245 PRK05600 thiamine biosynthesis 82.4 1.8 4.6E-05 22.3 3.7 100 198-300 37-163 (370)
246 TIGR02734 crtI_fam phytoene de 82.4 1.8 4.7E-05 22.2 3.7 219 205-489 1-249 (526)
247 PRK07340 ornithine cyclodeamin 82.3 3.5 9E-05 20.2 8.6 116 181-313 109-232 (304)
248 PRK12831 putative oxidoreducta 82.3 2.6 6.6E-05 21.2 4.4 41 200-243 138-182 (464)
249 PRK11749 putative oxidoreducta 82.1 2.6 6.6E-05 21.2 4.4 37 198-237 136-172 (460)
250 PRK06183 mhpA 3-(3-hydroxyphen 81.8 2.7 6.9E-05 21.0 4.4 52 198-252 8-60 (554)
251 TIGR01317 GOGAT_sm_gam glutama 81.8 2.5 6.3E-05 21.3 4.2 107 201-326 150-261 (517)
252 PRK08163 salicylate hydroxylas 81.7 2.6 6.7E-05 21.1 4.3 36 202-240 4-39 (396)
253 cd00704 MDH Malate dehydrogena 81.7 3.7 9.5E-05 20.1 8.3 103 203-305 1-130 (323)
254 COG3380 Predicted NAD/FAD-depe 81.6 2.5 6.4E-05 21.3 4.2 32 204-238 3-34 (331)
255 pfam04198 Sugar-bind Putative 81.5 3.8 9.6E-05 20.0 10.8 99 156-260 4-108 (255)
256 pfam01946 Thi4 Thi4 family. Th 81.4 2.5 6.5E-05 21.2 4.1 35 200-237 15-49 (229)
257 PRK07680 late competence prote 81.3 3.8 9.7E-05 20.0 10.8 72 203-281 1-73 (273)
258 pfam01494 FAD_binding_3 FAD bi 81.3 2.6 6.6E-05 21.2 4.1 47 202-251 1-48 (349)
259 PRK04176 ribulose-1,5-biphosph 81.0 2.5 6.5E-05 21.2 4.0 36 199-237 22-57 (257)
260 PTZ00318 NADH dehydrogenase; P 80.9 1.9 4.9E-05 22.1 3.4 37 198-237 6-42 (514)
261 PRK12778 putative bifunctional 80.9 4 0.0001 19.9 6.0 32 455-487 437-468 (760)
262 PRK04308 murD UDP-N-acetylmura 80.8 3 7.7E-05 20.7 4.3 36 199-237 2-37 (445)
263 COG1252 Ndh NADH dehydrogenase 80.5 3.1 7.8E-05 20.7 4.3 36 201-237 2-37 (405)
264 TIGR03315 Se_ygfK putative sel 80.5 3.2 8.2E-05 20.5 4.4 95 59-177 58-180 (1012)
265 pfam02558 ApbA Ketopantoate re 80.5 3.6 9.3E-05 20.2 4.7 96 205-304 1-103 (150)
266 PRK08243 4-hydroxybenzoate 3-m 80.4 3.1 8E-05 20.6 4.3 46 203-251 3-51 (392)
267 PRK13609 diacylglycerol glucos 80.4 4.1 0.0001 19.8 5.4 37 203-241 5-47 (388)
268 PRK07574 formate dehydrogenase 80.3 4.1 0.0001 19.8 8.7 254 52-350 43-343 (385)
269 PRK11259 solA N-methyltryptoph 80.3 3.1 8E-05 20.6 4.3 33 204-239 5-37 (377)
270 PRK07364 2-octaprenyl-6-methox 80.3 4.1 0.00011 19.8 5.5 51 201-254 16-69 (413)
271 PRK07045 putative monooxygenas 80.1 3.1 8E-05 20.6 4.2 48 201-251 4-52 (388)
272 PRK06475 salicylate hydroxylas 80.1 3.2 8.1E-05 20.6 4.3 37 203-242 3-39 (400)
273 PRK06912 acoL dihydrolipoamide 79.7 3.5 8.9E-05 20.3 4.4 33 203-238 1-33 (458)
274 PRK12409 D-amino acid dehydrog 79.7 3.5 8.8E-05 20.3 4.3 33 204-239 3-35 (410)
275 PRK08020 ubiF 2-octaprenyl-3-m 79.6 3.3 8.3E-05 20.5 4.2 34 202-238 5-38 (391)
276 pfam02737 3HCDH_N 3-hydroxyacy 79.5 3.4 8.8E-05 20.3 4.3 146 204-367 1-168 (180)
277 cd01484 E1-2_like Ubiquitin ac 79.5 4.4 0.00011 19.6 5.1 35 204-240 1-35 (234)
278 PRK07843 3-ketosteroid-delta-1 79.5 3.6 9.3E-05 20.2 4.4 37 201-240 4-40 (560)
279 PRK01747 mnmC 5-methylaminomet 79.4 3.5 8.9E-05 20.3 4.3 35 201-238 255-289 (660)
280 cd01491 Ube1_repeat1 Ubiquitin 79.3 2.8 7.3E-05 20.9 3.8 42 197-240 14-55 (286)
281 PRK13018 cell division protein 79.3 4.4 0.00011 19.6 5.8 94 200-293 25-138 (387)
282 KOG1399 consensus 79.1 3.1 8E-05 20.6 4.0 28 201-228 5-32 (448)
283 pfam00070 Pyr_redox Pyridine n 79.0 4.4 0.00011 19.6 4.7 37 204-243 1-37 (82)
284 COG1179 Dinucleotide-utilizing 78.8 2.8 7.2E-05 20.9 3.7 42 199-242 27-68 (263)
285 PRK07538 hypothetical protein; 78.8 3.8 9.7E-05 20.0 4.3 34 203-239 1-34 (413)
286 PRK08618 ornithine cyclodeamin 78.8 4.6 0.00012 19.5 11.7 116 192-322 118-243 (325)
287 COG0665 DadA Glycine/D-amino a 78.8 4 0.0001 19.9 4.4 38 201-241 3-40 (387)
288 cd01483 E1_enzyme_family Super 78.8 3.9 0.0001 19.9 4.4 36 204-241 1-36 (143)
289 PRK09853 putative selenate red 78.6 4 0.0001 19.9 4.4 95 59-177 59-182 (1032)
290 PRK08013 hypothetical protein; 78.4 3.6 9.1E-05 20.2 4.1 36 200-238 1-36 (400)
291 PRK00421 murC UDP-N-acetylmura 78.3 4.7 0.00012 19.4 7.5 82 203-297 9-95 (459)
292 PRK06184 hypothetical protein; 78.3 4.7 0.00012 19.4 5.5 52 201-255 5-57 (503)
293 PRK09330 cell division protein 77.6 4.9 0.00013 19.2 5.8 92 202-293 12-123 (387)
294 PRK03803 murD UDP-N-acetylmura 77.6 3.8 9.6E-05 20.1 4.0 90 200-297 5-97 (448)
295 cd01974 Nitrogenase_MoFe_beta 77.5 3.7 9.3E-05 20.1 3.9 56 456-517 302-364 (435)
296 COG0654 UbiH 2-polyprenyl-6-me 77.5 5 0.00013 19.2 6.8 57 202-261 2-60 (387)
297 pfam03486 HI0933_like HI0933-l 77.5 4.2 0.00011 19.7 4.2 32 204-238 2-33 (405)
298 PRK08849 2-octaprenyl-3-methyl 77.2 4.3 0.00011 19.6 4.2 35 200-237 1-35 (384)
299 COG1064 AdhP Zn-dependent alco 77.1 5.1 0.00013 19.2 7.2 57 176-236 140-198 (339)
300 PRK10157 putative oxidoreducta 77.0 4.3 0.00011 19.7 4.2 32 203-237 6-37 (428)
301 PRK08244 hypothetical protein; 76.9 5.2 0.00013 19.1 5.6 53 202-257 2-55 (494)
302 KOG2018 consensus 76.9 3.1 8E-05 20.6 3.4 40 198-239 70-109 (430)
303 COG0078 ArgF Ornithine carbamo 76.8 5.2 0.00013 19.1 11.6 200 43-278 3-229 (310)
304 PRK12439 NAD(P)H-dependent gly 76.7 2.4 6.2E-05 21.4 2.8 25 201-225 5-29 (340)
305 PRK06115 dihydrolipoamide dehy 76.7 4.8 0.00012 19.3 4.4 37 201-240 2-38 (466)
306 PRK10015 hypothetical protein; 76.6 4.5 0.00012 19.5 4.2 32 202-236 5-36 (429)
307 PRK11559 garR tartronate semia 76.5 5.3 0.00014 19.0 8.5 108 203-323 2-119 (295)
308 PRK06467 dihydrolipoamide dehy 76.5 5 0.00013 19.2 4.4 35 202-239 4-38 (472)
309 PRK12814 putative NADPH-depend 76.4 5.1 0.00013 19.1 4.4 34 201-237 192-225 (652)
310 PRK12771 putative glutamate sy 76.3 4.5 0.00012 19.5 4.1 34 201-237 136-169 (560)
311 PRK08862 short chain dehydroge 76.2 5.1 0.00013 19.2 4.4 36 199-237 2-38 (227)
312 PRK12842 putative succinate de 76.2 5.1 0.00013 19.2 4.4 34 203-239 6-39 (567)
313 COG1063 Tdh Threonine dehydrog 76.2 5.4 0.00014 19.0 11.2 120 176-305 143-273 (350)
314 PRK12835 3-ketosteroid-delta-1 76.2 5.1 0.00013 19.2 4.4 29 277-305 270-299 (584)
315 TIGR03364 HpnW_proposed FAD de 76.1 4.6 0.00012 19.4 4.1 32 205-239 3-34 (365)
316 TIGR00692 tdh L-threonine 3-de 75.9 5.5 0.00014 18.9 8.4 106 190-310 149-270 (341)
317 PRK05249 soluble pyridine nucl 75.8 5.5 0.00014 18.9 4.5 37 199-238 3-39 (465)
318 PRK08773 2-octaprenyl-3-methyl 75.5 5.4 0.00014 19.0 4.4 34 201-237 5-38 (392)
319 PRK11883 protoporphyrinogen ox 75.5 5.6 0.00014 18.9 4.5 33 204-237 2-34 (452)
320 TIGR02355 moeB molybdopterin s 75.4 3.5 8.9E-05 20.3 3.4 40 198-239 20-59 (240)
321 cd02191 FtsZ FtsZ is a GTPase 75.2 5.7 0.00015 18.8 5.7 90 203-292 1-110 (303)
322 COG0345 ProC Pyrroline-5-carbo 75.1 5.7 0.00015 18.8 13.8 194 203-446 2-214 (266)
323 PRK08132 hypothetical protein; 75.1 5.5 0.00014 18.9 4.3 51 200-253 21-72 (549)
324 PRK06129 3-hydroxyacyl-CoA deh 75.1 5.7 0.00015 18.8 13.5 104 203-311 3-125 (308)
325 TIGR00137 gid gid protein; Int 75.0 2.6 6.7E-05 21.1 2.7 183 203-427 1-215 (444)
326 PRK07608 hypothetical protein; 75.0 5.4 0.00014 19.0 4.2 34 202-238 5-38 (389)
327 PRK03379 vitamin B12-transport 75.0 5.8 0.00015 18.8 7.5 54 136-199 71-124 (265)
328 PRK07819 3-hydroxybutyryl-CoA 75.0 5.8 0.00015 18.8 4.4 32 203-237 3-34 (284)
329 KOG2250 consensus 74.9 5.8 0.00015 18.8 12.2 227 72-303 79-368 (514)
330 PRK04690 murD UDP-N-acetylmura 74.8 5 0.00013 19.2 4.0 36 199-236 5-40 (468)
331 TIGR00065 ftsZ cell division p 74.5 5.9 0.00015 18.7 5.4 234 199-480 14-296 (365)
332 COG0493 GltD NADPH-dependent g 74.5 6 0.00015 18.7 5.0 36 199-237 120-155 (457)
333 pfam03807 F420_oxidored NADP o 74.4 6 0.00015 18.7 5.6 78 204-291 1-78 (93)
334 PRK05708 2-dehydropantoate 2-r 74.1 5.4 0.00014 19.0 4.0 92 202-304 2-107 (305)
335 TIGR01466 cobJ_cbiH precorrin- 74.1 6.1 0.00016 18.6 5.8 92 62-167 54-151 (254)
336 PRK12843 putative FAD-binding 74.0 6.1 0.00016 18.6 4.3 37 201-240 13-49 (576)
337 PRK07109 short chain dehydroge 73.7 6.2 0.00016 18.6 4.3 39 196-237 2-41 (338)
338 PRK07589 ornithine cyclodeamin 73.6 6.2 0.00016 18.5 11.8 219 47-315 7-242 (346)
339 COG2081 Predicted flavoprotein 73.4 5.4 0.00014 19.0 3.9 166 201-379 2-222 (408)
340 PRK06046 alanine dehydrogenase 73.3 6.3 0.00016 18.5 11.2 192 192-422 120-322 (326)
341 PRK00230 orotidine 5'-phosphat 73.3 6.2 0.00016 18.6 4.2 57 124-182 7-69 (231)
342 pfam00890 FAD_binding_2 FAD bi 73.3 6.3 0.00016 18.5 4.4 32 205-239 2-33 (401)
343 PRK07845 flavoprotein disulfid 73.3 6.3 0.00016 18.5 4.4 32 204-238 3-34 (467)
344 PRK11430 hypothetical protein; 73.0 6.4 0.00016 18.5 8.3 131 196-329 6-163 (381)
345 PRK06522 2-dehydropantoate 2-r 72.7 6.5 0.00017 18.4 5.2 98 203-304 1-105 (307)
346 cd01520 RHOD_YbbB Member of th 72.5 6.5 0.00016 18.4 4.1 76 151-227 17-113 (128)
347 COG3643 Glutamate formiminotra 72.5 6.6 0.00017 18.4 5.5 14 678-691 261-274 (302)
348 PRK07121 hypothetical protein; 72.3 6.7 0.00017 18.3 4.3 22 205-226 23-44 (491)
349 PRK05714 2-octaprenyl-3-methyl 72.2 6.4 0.00016 18.5 4.1 33 203-238 3-35 (405)
350 PRK06416 dihydrolipoamide dehy 72.1 6.7 0.00017 18.3 4.4 33 203-238 5-37 (462)
351 TIGR00292 TIGR00292 thiazole b 72.1 5 0.00013 19.2 3.5 85 200-287 19-134 (283)
352 cd01973 Nitrogenase_VFe_beta_l 71.8 6.8 0.00017 18.3 9.9 110 387-518 248-367 (454)
353 cd01488 Uba3_RUB Ubiquitin act 71.8 6.8 0.00017 18.3 4.9 35 204-240 1-35 (291)
354 PRK06292 dihydrolipoamide dehy 71.7 6.9 0.00018 18.3 4.3 35 201-238 2-36 (460)
355 PRK12775 putative trifunctiona 71.7 6.7 0.00017 18.3 4.1 151 202-370 573-753 (993)
356 PRK10262 thioredoxin reductase 71.3 7 0.00018 18.2 4.4 35 200-237 4-38 (321)
357 TIGR01591 Fdh-alpha formate de 70.9 2.4 6.1E-05 21.4 1.6 80 158-238 112-202 (694)
358 PRK09126 hypothetical protein; 70.8 7.2 0.00018 18.1 5.3 34 201-237 2-35 (392)
359 TIGR02279 PaaC-3OHAcCoADH 3-hy 70.8 5.3 0.00014 19.0 3.4 329 200-572 3-442 (508)
360 cd01489 Uba2_SUMO Ubiquitin ac 70.7 7.2 0.00018 18.1 7.3 127 204-341 1-137 (312)
361 PRK03515 ornithine carbamoyltr 70.7 7.2 0.00018 18.1 9.9 109 160-276 112-231 (334)
362 PRK04965 nitric oxide reductas 70.5 7.3 0.00019 18.1 4.7 42 203-245 3-44 (378)
363 PRK03525 crotonobetainyl-CoA:c 70.5 7.3 0.00019 18.1 7.3 102 198-302 10-125 (405)
364 PRK02255 putrescine carbamoylt 70.5 7.3 0.00019 18.1 13.0 166 132-312 86-286 (341)
365 COG0771 MurD UDP-N-acetylmuram 70.3 6.8 0.00017 18.3 3.9 35 200-237 5-39 (448)
366 PRK11101 glpA sn-glycerol-3-ph 70.0 7.5 0.00019 18.0 4.4 34 201-237 4-37 (545)
367 TIGR01438 TGR thioredoxin and 69.9 6.7 0.00017 18.3 3.7 30 204-236 4-33 (513)
368 PRK06134 putative FAD-binding 69.9 7.5 0.00019 18.0 4.3 12 282-293 276-287 (579)
369 PRK07190 hypothetical protein; 69.9 7.5 0.00019 18.0 4.4 49 203-254 6-55 (480)
370 PRK06194 hypothetical protein; 69.7 7.6 0.00019 18.0 4.4 36 198-236 2-38 (301)
371 PRK12844 3-ketosteroid-delta-1 69.6 7.6 0.00019 17.9 4.3 22 205-226 9-30 (552)
372 PRK05732 2-octaprenyl-6-methox 69.3 7.7 0.0002 17.9 4.4 38 200-237 1-38 (395)
373 cd01493 APPBP1_RUB Ubiquitin a 69.3 6.4 0.00016 18.5 3.5 26 141-167 60-85 (425)
374 KOG2550 consensus 69.1 7.8 0.0002 17.9 5.6 233 84-361 120-388 (503)
375 pfam10223 DUF2181 Uncharacteri 69.1 7.3 0.00019 18.1 3.8 63 98-178 40-108 (244)
376 cd03798 GT1_wlbH_like This fam 69.0 7.8 0.0002 17.9 5.2 35 469-503 219-257 (377)
377 TIGR03219 salicylate_mono sali 68.7 7.9 0.0002 17.8 4.4 36 606-641 299-335 (414)
378 TIGR02731 phytoene_desat phyto 68.6 6.1 0.00016 18.6 3.3 34 204-240 1-34 (454)
379 COG0476 ThiF Dinucleotide-util 68.5 7 0.00018 18.2 3.6 43 197-241 25-67 (254)
380 PRK12826 3-ketoacyl-(acyl-carr 68.1 8.1 0.00021 17.7 4.5 37 198-237 2-39 (253)
381 PRK12779 putative bifunctional 68.0 8.2 0.00021 17.7 4.0 88 397-491 627-718 (944)
382 COG1206 Gid NAD(FAD)-utilizing 67.8 8.3 0.00021 17.7 5.7 192 201-429 2-220 (439)
383 PRK06481 fumarate reductase fl 67.6 8.3 0.00021 17.7 4.4 15 490-504 376-390 (506)
384 TIGR01082 murC UDP-N-acetylmur 67.4 8.4 0.00021 17.7 7.5 436 204-744 1-481 (491)
385 TIGR01137 cysta_beta cystathio 67.3 7.3 0.00019 18.1 3.5 133 105-257 99-236 (527)
386 pfam12434 Malate_DH Malate deh 66.7 2.9 7.4E-05 20.8 1.3 18 14-31 11-28 (28)
387 pfam05910 DUF868 Plant protein 66.6 1.6 4.1E-05 22.6 0.0 45 42-101 74-118 (272)
388 PRK05976 dihydrolipoamide dehy 66.5 8.8 0.00022 17.5 4.4 34 202-238 4-37 (464)
389 PRK06327 dihydrolipoamide dehy 66.5 8.8 0.00022 17.5 4.1 31 203-236 5-35 (475)
390 PRK02102 ornithine carbamoyltr 66.5 8.8 0.00022 17.5 12.5 132 132-276 89-230 (331)
391 PRK07062 short chain dehydroge 66.5 8.8 0.00022 17.5 4.3 38 197-237 3-41 (265)
392 cd02201 FtsZ_type1 FtsZ is a G 66.4 8.8 0.00022 17.5 6.3 91 203-293 1-111 (304)
393 TIGR03253 oxalate_frc formyl-C 66.3 8.8 0.00023 17.5 6.8 128 198-328 2-157 (415)
394 PRK12587 putative monovalent c 66.2 8.1 0.00021 17.8 3.5 33 404-436 83-115 (118)
395 PRK06370 mercuric reductase; V 66.1 8.9 0.00023 17.5 4.4 34 201-237 3-36 (459)
396 PRK06445 acetyl-CoA acetyltran 66.1 8.9 0.00023 17.5 8.9 50 608-657 234-286 (394)
397 pfam05834 Lycopene_cycl Lycope 66.1 8.9 0.00023 17.5 4.4 33 205-238 2-34 (374)
398 PRK08192 aspartate carbamoyltr 66.0 9 0.00023 17.5 11.4 131 132-278 88-234 (338)
399 PRK06116 glutathione reductase 65.7 9.1 0.00023 17.4 4.2 33 202-237 4-36 (450)
400 TIGR01296 asd_B aspartate-semi 65.6 9 0.00023 17.4 3.7 48 273-321 251-308 (350)
401 PRK06200 2,3-dihydroxy-2,3-dih 65.6 9.1 0.00023 17.4 4.4 36 199-237 3-39 (263)
402 TIGR02024 FtcD glutamate formi 65.6 9.1 0.00023 17.4 4.8 105 117-221 31-184 (331)
403 TIGR00031 UDP-GALP_mutase UDP- 65.4 9.2 0.00023 17.4 4.0 24 204-227 3-27 (390)
404 PRK12823 benD 1,6-dihydroxycyc 65.0 9.3 0.00024 17.3 4.5 39 196-237 2-41 (260)
405 PRK11728 hypothetical protein; 65.0 9.3 0.00024 17.3 4.5 36 204-240 4-39 (400)
406 PRK08217 fabG 3-ketoacyl-(acyl 64.8 9.4 0.00024 17.3 4.3 36 199-237 2-38 (253)
407 PTZ00306 NADH-dependent fumara 64.7 9.4 0.00024 17.3 4.4 35 203-240 410-444 (1167)
408 pfam04820 Trp_halogenase Trypt 64.7 9.5 0.00024 17.3 5.7 56 81-156 27-83 (457)
409 PRK06617 2-octaprenyl-6-methox 64.7 9.5 0.00024 17.3 5.5 33 204-239 3-35 (374)
410 PRK08010 pyridine nucleotide-d 64.3 9.6 0.00024 17.3 4.3 36 201-239 2-37 (441)
411 PRK06500 short chain dehydroge 64.2 9.6 0.00025 17.2 4.4 37 198-237 2-39 (249)
412 TIGR01816 sdhA_forward succina 64.1 9.7 0.00025 17.2 3.8 32 272-306 310-345 (615)
413 PRK07666 fabG 3-ketoacyl-(acyl 64.1 9.7 0.00025 17.2 4.4 36 198-236 2-38 (238)
414 PTZ00314 inosine-5'-monophosph 63.9 9.8 0.00025 17.2 5.6 185 150-361 172-375 (499)
415 KOG2304 consensus 63.6 8.7 0.00022 17.6 3.3 153 204-362 13-237 (298)
416 PRK07818 dihydrolipoamide dehy 63.5 9.9 0.00025 17.2 4.3 33 202-237 4-36 (467)
417 PRK12845 3-ketosteroid-delta-1 63.4 9.9 0.00025 17.1 3.9 33 203-239 17-49 (566)
418 pfam00478 IMPDH IMP dehydrogen 62.8 5.6 0.00014 18.9 2.2 82 151-236 158-243 (467)
419 PRK07424 bifunctional sterol d 62.2 10 0.00027 17.0 4.6 31 162-196 58-88 (410)
420 TIGR03329 Phn_aa_oxid putative 62.2 10 0.00027 17.0 4.3 33 202-237 24-58 (460)
421 PRK05786 fabG 3-ketoacyl-(acyl 62.0 11 0.00027 17.0 4.3 35 199-236 2-37 (238)
422 PRK02705 murD UDP-N-acetylmura 61.7 11 0.00027 16.9 8.7 121 601-761 318-439 (459)
423 pfam07755 DUF1611 Protein of u 61.6 11 0.00027 16.9 4.2 62 606-676 225-286 (302)
424 PRK11445 putative oxidoreducta 61.3 11 0.00028 16.9 6.5 35 606-640 263-298 (348)
425 PRK08774 consensus 61.2 11 0.00028 16.9 3.9 31 204-237 6-36 (402)
426 cd04949 GT1_gtfA_like This fam 61.2 11 0.00028 16.9 7.0 20 285-304 88-109 (372)
427 cd01338 MDH_choloroplast_like 61.1 11 0.00028 16.9 8.3 103 202-305 2-132 (322)
428 TIGR02468 sucrsPsyn_pln sucros 61.1 6.6 0.00017 18.4 2.3 70 598-676 773-845 (1072)
429 PTZ00092 aconitate hydratase; 61.0 11 0.00028 16.9 3.7 14 559-572 709-722 (887)
430 COG1062 AdhC Zn-dependent alco 60.6 11 0.00028 16.8 9.2 93 200-307 184-293 (366)
431 PRK06035 3-hydroxyacyl-CoA deh 60.6 11 0.00028 16.8 11.3 33 202-237 3-35 (291)
432 PRK06125 short chain dehydroge 60.4 11 0.00029 16.8 4.6 37 198-237 3-40 (259)
433 COG1635 THI4 Ribulose 1,5-bisp 60.3 11 0.00029 16.8 3.7 27 201-227 29-55 (262)
434 TIGR02066 dsrB sulfite reducta 60.0 2.4 6.1E-05 21.4 -0.1 67 26-96 10-86 (366)
435 pfam00389 2-Hacid_dh D-isomer 60.0 11 0.00029 16.7 15.1 237 111-371 32-305 (313)
436 PRK12839 hypothetical protein; 59.9 11 0.00029 16.7 4.4 22 205-226 12-33 (574)
437 PRK06249 2-dehydropantoate 2-r 59.8 11 0.00029 16.7 7.8 95 200-304 3-109 (313)
438 PRK05398 formyl-coenzyme A tra 59.5 12 0.0003 16.7 7.7 129 197-328 2-158 (416)
439 PRK07041 short chain dehydroge 59.3 12 0.0003 16.7 4.3 37 198-237 3-40 (240)
440 COG1893 ApbA Ketopantoate redu 59.3 12 0.0003 16.7 6.0 94 203-305 1-105 (307)
441 PRK09072 short chain dehydroge 59.1 12 0.0003 16.6 4.3 36 199-237 2-38 (262)
442 COG1233 Phytoene dehydrogenase 59.0 12 0.0003 16.6 4.3 37 201-240 2-38 (487)
443 TIGR01835 HMG-CoA-S_prok hydro 58.8 12 0.0003 16.6 5.8 158 147-317 30-203 (412)
444 TIGR01087 murD UDP-N-acetylmur 58.6 12 0.00031 16.6 3.6 129 600-762 334-462 (476)
445 TIGR02733 desat_CrtD C-3',4' d 58.5 12 0.00031 16.6 4.0 26 202-227 1-26 (499)
446 TIGR01316 gltA glutamate synth 58.3 10 0.00027 17.0 2.9 26 201-226 141-166 (462)
447 PRK12837 3-ketosteroid-delta-1 58.0 12 0.00031 16.5 4.1 23 282-304 237-260 (515)
448 PRK03815 murD UDP-N-acetylmura 57.8 12 0.00031 16.5 4.1 115 604-760 270-384 (401)
449 COG0562 Glf UDP-galactopyranos 57.7 12 0.00032 16.5 4.1 34 204-240 3-36 (374)
450 pfam03435 Saccharop_dh Sacchar 57.6 12 0.00032 16.5 3.6 94 205-307 1-104 (384)
451 TIGR01037 pyrD_sub1_fam dihydr 57.6 12 0.00032 16.5 3.2 14 129-142 103-116 (308)
452 PRK08268 3-hydroxybutyryl-CoA 57.6 12 0.00032 16.5 4.4 114 203-322 4-138 (503)
453 PRK06815 hypothetical protein; 57.4 13 0.00032 16.4 15.9 88 131-227 5-94 (318)
454 PRK08643 acetoin reductase; Va 57.2 11 0.00028 16.8 2.9 20 214-236 15-34 (256)
455 PRK07057 sdhA succinate dehydr 57.2 13 0.00032 16.4 3.8 11 78-88 34-44 (591)
456 PRK06123 short chain dehydroge 57.1 11 0.00027 17.0 2.8 68 80-147 3-81 (249)
457 PRK05650 short chain dehydroge 57.1 13 0.00032 16.4 4.3 109 204-325 2-136 (270)
458 COG1250 FadB 3-hydroxyacyl-CoA 57.1 13 0.00032 16.4 8.6 33 202-237 3-35 (307)
459 PRK07048 serine/threonine dehy 56.9 13 0.00033 16.4 12.3 89 130-227 7-97 (321)
460 cd01490 Ube1_repeat2 Ubiquitin 56.9 13 0.00033 16.4 5.5 39 204-242 1-42 (435)
461 TIGR01166 cbiO cobalt ABC tran 56.8 6.3 0.00016 18.5 1.6 61 97-169 24-112 (190)
462 PRK07066 3-hydroxybutyryl-CoA 56.7 13 0.00033 16.4 16.0 32 203-237 8-39 (321)
463 TIGR03201 dearomat_had 6-hydro 56.6 13 0.00033 16.4 5.7 43 190-236 156-198 (349)
464 TIGR01809 Shik-DH-AROM shikima 56.5 13 0.00033 16.4 5.6 122 174-312 106-253 (291)
465 PRK05872 short chain dehydroge 56.4 13 0.00033 16.3 4.4 37 198-237 5-42 (296)
466 PRK07124 consensus 56.1 13 0.00034 16.3 6.0 42 615-656 243-284 (402)
467 COG0206 FtsZ Cell division GTP 55.9 13 0.00034 16.3 5.2 95 200-294 9-123 (338)
468 PRK08703 short chain dehydroge 55.8 13 0.00034 16.3 4.4 35 199-236 3-38 (239)
469 COG0565 LasT rRNA methylase [T 55.7 13 0.00034 16.3 6.4 69 201-279 3-81 (242)
470 PRK12384 sorbitol-6-phosphate 55.6 11 0.00028 16.9 2.7 30 204-236 4-34 (259)
471 PRK06720 hypothetical protein; 55.6 13 0.00034 16.3 4.3 37 197-236 11-48 (169)
472 TIGR03325 BphB_TodD cis-2,3-di 55.4 13 0.00034 16.2 4.3 35 199-236 2-37 (262)
473 PRK07889 enoyl-(acyl carrier p 54.9 14 0.00035 16.2 4.2 36 199-237 4-42 (256)
474 PRK00779 ornithine carbamoyltr 54.8 14 0.00035 16.2 13.0 147 163-334 114-292 (308)
475 PRK08274 tricarballylate dehyd 54.8 14 0.00035 16.2 4.1 11 78-88 26-36 (456)
476 PRK06199 ornithine cyclodeamin 54.8 14 0.00035 16.2 9.4 203 192-428 146-374 (379)
477 PRK05441 murQ N-acetylmuramic 54.7 14 0.00035 16.2 5.2 99 202-308 58-169 (273)
478 PRK08264 short chain dehydroge 54.2 14 0.00036 16.1 3.8 34 199-234 2-36 (235)
479 PRK07024 short chain dehydroge 53.9 14 0.00036 16.1 4.4 32 203-237 3-35 (256)
480 PRK08277 D-mannonate oxidoredu 53.8 14 0.00036 16.1 4.3 35 199-236 7-42 (278)
481 PRK01368 murD UDP-N-acetylmura 53.7 14 0.00037 16.0 7.5 118 601-761 312-430 (450)
482 cd00751 thiolase Thiolase are 53.2 15 0.00037 16.0 9.3 49 608-656 227-278 (386)
483 COG5016 Pyruvate/oxaloacetate 53.1 15 0.00037 16.0 5.6 11 158-168 64-74 (472)
484 PRK07502 cyclohexadienyl dehyd 53.0 15 0.00037 16.0 5.8 96 203-307 7-106 (307)
485 PRK05855 short chain dehydroge 53.0 15 0.00038 16.0 4.2 43 458-500 340-385 (582)
486 KOG2755 consensus 52.9 15 0.00037 16.0 3.0 32 204-236 1-32 (334)
487 PRK06841 short chain dehydroge 52.9 15 0.00038 16.0 4.3 36 199-237 12-48 (255)
488 PRK05876 short chain dehydroge 52.8 15 0.00038 16.0 4.4 37 198-237 2-39 (275)
489 PRK06079 enoyl-(acyl carrier p 52.6 15 0.00038 15.9 4.0 34 200-236 5-41 (252)
490 PRK08945 short chain dehydroge 52.5 15 0.00038 15.9 4.3 34 200-236 11-45 (245)
491 PRK06171 sorbitol-6-phosphate 52.4 15 0.00038 15.9 4.3 37 199-238 6-43 (266)
492 PRK06505 enoyl-(acyl carrier p 52.4 15 0.00038 15.9 3.9 35 199-236 4-41 (271)
493 PRK12672 putative monovalent c 52.4 12 0.00031 16.5 2.5 31 404-435 88-118 (118)
494 PRK07831 short chain dehydroge 51.8 15 0.00039 15.9 3.9 35 200-237 14-50 (261)
495 PRK04523 N-acetylornithine car 51.8 15 0.00039 15.8 9.2 110 160-277 127-251 (335)
496 PRK11064 wecC UDP-N-acetyl-D-m 51.7 15 0.00039 15.8 10.6 33 202-237 3-35 (415)
497 PRK12268 methionyl-tRNA synthe 51.7 15 0.00039 15.8 5.0 86 622-733 472-557 (558)
498 PRK11539 hypothetical protein; 51.5 15 0.00039 15.8 5.4 31 642-676 678-708 (754)
499 TIGR02023 BchP-ChlP geranylger 51.5 15 0.0004 15.8 3.5 31 204-237 2-32 (408)
500 PRK07576 short chain dehydroge 51.5 15 0.0004 15.8 4.3 35 199-236 5-40 (260)
No 1
>PRK07232 malic enzyme; Reviewed
Probab=100.00 E-value=0 Score=2208.92 Aligned_cols=753 Identities=49% Similarity=0.836 Sum_probs=746.0
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEECCCCC
Q ss_conf 14699999998405899727998504348855721430730579999999889988875135847999817850025422
Q gi|254780137|r 17 GDSLFKQALLYHQYPSPGKLEVNATKMLNDQKDLSLAYSPGVAAPSMMIAEDPSKAAMYTNRSNLVAVVSNGSAVLGLGD 96 (779)
Q Consensus 17 ~~~~~~~al~~h~~~~~gk~~~~~~~~~~~~~dl~~~ytpgva~~~~~i~~~~~~~~~~t~~~n~vaVvtdGt~vLGLGd 96 (779)
.++++++||+||++++||||+|.||+|+.||+|||||||||||+||++|++||+.+|+||+|||+|||||||||||||||
T Consensus 1 ~~~~~~~al~~h~~~~~gk~~~~~~~~~~~~~dlslayspgva~~c~~i~~~p~~~~~yt~~~n~vavvs~gtavlglg~ 80 (753)
T PRK07232 1 DEQLKQAALDYHRFPRPGKIEVTPTKPLATQRDLSLAYSPGVAAPCLEIAKDPADAYKYTARGNLVAVISNGTAVLGLGN 80 (753)
T ss_pred CCHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHCCCCCCHHHHHHHHHCHHHHHHHHCCCCEEEEEECCCEEECCCC
T ss_conf 92688999996456999716997457668644410101884289999998697989876214756999978963402776
Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCEEEHHHCCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 05105830010089999862698526542388988999999987088846062220648015799999998718942168
Q gi|254780137|r 97 IGPLASKPVMEGKAVLFKKFAGINVFDIEINAKDVDTMVSTIVALEPTFGGINLEDIKAPECFEVERILSQKLKIPFLHD 176 (779)
Q Consensus 97 iG~~a~~pvmeGK~~L~k~~agid~~~i~~~~~d~~e~i~~v~~~~p~fg~i~lEDi~~p~~f~i~~~l~~~~~ipvf~D 176 (779)
|||.||+||||||++|||+|||||+||||+|++||||||++|+.++|||||||||||++|+||+||+|||++|+||||||
T Consensus 81 ig~~a~~pvmegk~~lfk~fa~id~~~i~~~~~d~~~~i~~v~~~~ptfgginledi~ap~cf~ie~~l~~~~~ipv~hd 160 (753)
T PRK07232 81 IGALASKPVMEGKGVLFKKFAGIDVFDIEVDEEDPDKFIEAVAALEPTFGGINLEDIKAPECFYIEQKLRERMDIPVFHD 160 (753)
T ss_pred CCCCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCCCEECHHHCCCCCHHHHHHHHHHHCCCCEECC
T ss_conf 67100476210256787876489844342088998999999998588866037988689732389999998659982337
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHH
Q ss_conf 77218999999999999970988224117874254256789999998198857589995596030787332667889774
Q gi|254780137|r 177 DQHGTAVTVTAATLNGMKLVGKKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYA 256 (779)
Q Consensus 177 D~qGTa~v~lA~llnAl~~~gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a 256 (779)
||||||+|++|||+|||+++||+++++|||++|||+||++|++||+.+|++++|||+||++|+||++|++.|++||.+||
T Consensus 161 dqhgtaiv~~a~l~nal~~~~k~~~~~kiv~~GaGaa~~a~~~ll~~~G~~~~ni~~~d~~Gvi~~~r~~~~~~~k~~~a 240 (753)
T PRK07232 161 DQHGTAIISAAALLNALELVGKKIEDVKIVVSGAGAAAIACLNLLVALGAKKENIIVCDSKGVIYKGRTEGMDEWKAAYA 240 (753)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCHHHEEEEEECCCHHHHHHHHHHHHCCCCHHCEEEEECCCCCCCCCCCCCHHHHHHHC
T ss_conf 76518999999999999983864667189997886888999999998499801079995778656888776249999863
Q ss_pred HCCCCCCHHHHCCCCCEEEECCCCCCCCHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHCCCEEECCCCCCCCCCCCHHH
Q ss_conf 50889888886058837862578877898899721899779991787200998899851898798058878877435034
Q gi|254780137|r 257 QKSGPKPLSETMNNADVFLGLSVAGALDPAILKFMAEKPLIMVLANPNPEAMPDEIKKVRPDAMICTGRSDFSNQVNNVL 336 (779)
Q Consensus 257 ~~~~~~~l~ea~~~adv~iG~S~~g~~t~e~v~~M~~~PiIfaLsNP~pEi~p~~a~~~~g~aivatGrs~~pnQ~NN~l 336 (779)
..|+.++|.|+++|||||||+|++|++|+|||++|+++|||||||||+|||+|++|+++++++|+||||||||||+||+|
T Consensus 241 ~~t~~~~l~ea~~gaDvfig~S~~~~~~~~mv~~Ma~~pivfalANP~PEI~p~~a~~~r~d~i~aTGRsD~pNQvNNvl 320 (753)
T PRK07232 241 QDTDARTLAEAIEGADVFLGLSAAGVLTPEMVKSMADNPIIFALANPDPEITPEEAKAVRPDAIIATGRSDYPNQVNNVL 320 (753)
T ss_pred CCCCCCCHHHHHCCCCEEEECCCCCCCCHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHCCEEEECCCCCCCCCCCHHH
T ss_conf 46898869999579978997477997899999862878779856898977699999976043798348889854111111
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 55665456751373002678999999999987203313667741387676667522366654677867988889998742
Q gi|254780137|r 337 CFPYIFRGALDCGATAITEEMKVAAARAMAVLVRDVPPDVVFDNFAKESPVFGPNYLIPSPFDPNLISYIAPAVAKAAEE 416 (779)
Q Consensus 337 ~FPgif~Gal~~~A~~Itd~M~~aAa~alA~la~~~~~~~~~~~~~~~~~~~g~~yiiP~~fd~r~~~~va~AVa~aA~~ 416 (779)
||||||||||||||++|||+||+||++|||+|+++++|++|..+|+++.+.||+|||||+||||||+++|++|||||||+
T Consensus 321 ~FP~ifRGaLdv~A~~In~~Mk~aa~~alA~la~~~~~~~v~~~y~~~~~~fg~~y~ip~pfd~r~~~~v~~ava~aa~~ 400 (753)
T PRK07232 321 CFPYIFRGALDVGATTINEEMKIAAVRAIAELAREEVSDEVAAAYGGQKLSFGPEYIIPKPFDPRLIVKIAPAVAKAAMD 400 (753)
T ss_pred CCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 24087766886175738899999999999999862599999997277776778764268898973153542999999997
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHH
Q ss_conf 13223543225899999998620125688999999721589469982477404679999998527508999559899999
Q gi|254780137|r 417 AGVASSPIEDYEVYRDSLKRFSFPGRSLMKKIFSIAKGTDSKRILFSAGEDERVLRATQILIKENIARPVLIGSLLTIQD 496 (779)
Q Consensus 417 sGvAr~pi~d~~~Y~~~L~~rl~~s~~~mr~i~~~AK~~~pKRIVfaEgeD~rVLrAA~~~~eeGia~PILVG~~e~I~~ 496 (779)
|||||+||.||++||++|++|+++|..+||+||++||+ +|||||||||||+||||||+.+++|||++||||||+++|++
T Consensus 401 ~gva~~~i~d~~~Y~~~L~~rl~~s~~~mr~I~erAK~-~pKRIVFpEGEDeRVLrAA~~~~~EGIa~PILlGr~~~I~~ 479 (753)
T PRK07232 401 SGVATRPIADMDAYREKLEAFVYRTGLVMKPIFAKAKK-DPKRVVFAEGEEERVLRAAQEVVDEGLAKPILIGRPSVIEA 479 (753)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHH-CCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCHHHHHH
T ss_conf 48887885559999999998767408899999999974-88669825887778999999999769862588569999999
Q ss_pred HHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHCCCCCEEECCCCCCCC
Q ss_conf 99984987665468423062025567899999999876379998999999862535678999865721001004467774
Q gi|254780137|r 497 NIRRHDLQIIATKDFDVIDLNNKQSLKDYVDSYRSLSAEKGISLDSIYDLLRSNTTLLGSLALKRGEGDGMICMCDSESG 576 (779)
Q Consensus 497 ~~~~~gL~l~~~~dieIidp~~~~~~~~ya~~l~~~~~RKG~~~~~A~~~vr~d~~~faa~MV~~G~AD~lI~G~~~t~~ 576 (779)
+++++||+++..+++||+||++++++++||++||++|||||+++++|+++|++|+||||+|||++|+||+||||++ ++
T Consensus 480 ~a~elGL~l~~~~~ieIIdP~~s~~~~~Ya~~~~elrqRKGvt~~~A~~lmr~d~nyFgAmMV~~GdADgmVsG~t--~s 557 (753)
T PRK07232 480 RIKKLGLRLKAGVDFEIVNPEDDPRYEEYWQYYYELLQRRGVTPEDARRLVRRDRTVIGAMMVALGDADAMICGLT--GR 557 (753)
T ss_pred HHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCEEECCCC--CC
T ss_conf 9997699976677716768876178999999999998645999999999986384348999997589887813888--88
Q ss_pred HHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCC
Q ss_conf 04677777630687668501210013557773499974736889898899999999999999818997299997025578
Q gi|254780137|r 577 YNSHLTDIHKIIGMGLGISHYSAMSMCIVRDNFLFFTDTHVSAEPSAMEIADSTILASQAICSLGMRPKVSVLFHSNSGS 656 (779)
Q Consensus 577 y~~~lr~~~~vIG~~~g~~~vs~~~il~~~~~~lFiaDtaVNi~PtaEqLAdIa~~aa~~ar~lGiePkVAlLS~SnfGs 656 (779)
|.+++|+++++||+++|+++++++|+|+++++++||+||+||++||+|||||||+++++++|+||++|||||||||||||
T Consensus 558 ya~tLRpalqVIg~~pGv~~Vsg~~iMi~~~g~lF~ADt~Vn~~PtAEqLAdIAi~aA~~ar~fGiePRVAmLSfSnfGS 637 (753)
T PRK07232 558 YHEHLRVVRQVIGLRPGVSRAAAMNLLLLKGGTLFIADTYVNEDPTAEELAEIAIMAAEEVRRFGIEPRVALLSHSNFGS 637 (753)
T ss_pred HHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC
T ss_conf 79999999986366999853688899992798589972636789599999999999999999849997089980477899
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEECCCCHHHHCCHHHHHHCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCEEE
Q ss_conf 88977899999999998737995998673046532989896308998777777778818912888999999986598687
Q gi|254780137|r 657 HCIKSSLKMRDSFEKICELSKNLEVDAIVQEEVCLSEIFCDKDVPNTSSSQDAQLLVFPNIDSANIALEMAKSVTNGLHI 736 (779)
Q Consensus 657 ~~~~s~~kvr~A~eil~~~~pd~~VDGemq~D~AL~~~ia~~K~p~S~laG~ANVLIfPnLeAaNI~yKllq~lgga~ai 736 (779)
++++++.|||+|++++++++|||+||||||+|+||+++++++|||||+|+|+|||||||||+||||+|||+|++||+.+|
T Consensus 638 ~~~~~a~KVreAv~il~er~PdlevDGEMQ~DaAL~~~v~~~k~PfS~L~G~ANVLIFPnLdAaNIaYKLlq~lgga~aI 717 (753)
T PRK07232 638 SDSPSARKMREAVELLDERAPDLEVDGEMHGDAALNEEIRKRLYPFSRLKGSANVLVMPNLDAANISYNLLKELGGGVTI 717 (753)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEECCCCHHHHCCHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCEEE
T ss_conf 99952789999999999768998881367560443999999658489678888589889975678999999996398698
Q ss_pred CHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 144314589879878763898899999999999996
Q gi|254780137|r 737 GTLLLGAALPVHIVPSSVSVREIIDMVALVMASNNS 772 (779)
Q Consensus 737 GPIL~G~~kPV~ilsr~~Sv~dIvn~aAlA~~~A~~ 772 (779)
||||+|++||||++|||||++||+||++||+++||+
T Consensus 718 GPIL~GL~KPVhiLsrgaSv~dIVNmaAIaavdAQ~ 753 (753)
T PRK07232 718 GPILLGMAKPVHILTPSATVRRIVNMTALAVVDAQT 753 (753)
T ss_pred CHHHHCCCCCHHHCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 735556797464579998599999999999986019
No 2
>PRK12862 malic enzyme; Reviewed
Probab=100.00 E-value=0 Score=2208.69 Aligned_cols=758 Identities=53% Similarity=0.888 Sum_probs=749.4
Q ss_pred CCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEECC
Q ss_conf 55314699999998405899727998504348855721430730579999999889988875135847999817850025
Q gi|254780137|r 14 FQEGDSLFKQALLYHQYPSPGKLEVNATKMLNDQKDLSLAYSPGVAAPSMMIAEDPSKAAMYTNRSNLVAVVSNGSAVLG 93 (779)
Q Consensus 14 ~~~~~~~~~~al~~h~~~~~gk~~~~~~~~~~~~~dl~~~ytpgva~~~~~i~~~~~~~~~~t~~~n~vaVvtdGt~vLG 93 (779)
.+..++++++||+||++++||||+|.||+|+.||+|||||||||||+||++|++||+.+|+||+|||+||||||||||||
T Consensus 4 ~~~~~~~~~~al~~h~~~~~gk~~~~~~~~~~~~~dlslaytpgva~~c~~i~~~~~~~~~yt~k~n~vavvs~gtavlg 83 (761)
T PRK12862 4 ASMKAKLREAALDYHRFPTPGKIEIAPTKPLANQRDLALAYSPGVAAPCLEIVADPANAARYTARGNLVAVVSNGTAVLG 83 (761)
T ss_pred CCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHCCCCCCHHHHHHHHHCHHHHHHHHCCCCEEEEEECCCEEEC
T ss_conf 62628999999986457999706997457667633310101774289999998697989876314746999968963402
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCEEEHHHCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 42205105830010089999862698526542388988999999987088846062220648015799999998718942
Q gi|254780137|r 94 LGDIGPLASKPVMEGKAVLFKKFAGINVFDIEINAKDVDTMVSTIVALEPTFGGINLEDIKAPECFEVERILSQKLKIPF 173 (779)
Q Consensus 94 LGdiG~~a~~pvmeGK~~L~k~~agid~~~i~~~~~d~~e~i~~v~~~~p~fg~i~lEDi~~p~~f~i~~~l~~~~~ipv 173 (779)
||||||.||+||||||++|||+|||||+||||+|++||||||++|+.++|||||||||||++|+||+||++||++|+|||
T Consensus 84 lg~ig~~a~~pvmegk~~lfk~fa~id~~~i~~~~~d~~~~i~~v~~~~ptfgginledi~ap~cf~ie~~l~~~~~ipv 163 (761)
T PRK12862 84 LGNIGPLASKPVMEGKAVLFKKFAGIDVFDIELDESDPDKLVEIIAALEPTFGGINLEDIKAPECFEVERKLRERMKIPV 163 (761)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCCCEECHHHCCCCCHHHHHHHHHHHCCCCE
T ss_conf 77667100476210256787876499835441188998999999998588866027988689732389999998559982
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHH
Q ss_conf 16877218999999999999970988224117874254256789999998198857589995596030787332667889
Q gi|254780137|r 174 LHDDQHGTAVTVTAATLNGMKLVGKKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKS 253 (779)
Q Consensus 174 f~DD~qGTa~v~lA~llnAl~~~gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~ 253 (779)
|||||||||+|++|||+|||+++||+++++|||++|||+||++|++||+++|++++||++|||+|+||++|++.+++||.
T Consensus 164 ~hddqhgtaiv~~a~l~nal~~~~k~~~~~kiv~~GaGaa~~a~~~ll~~~G~~~~ni~~~D~~Gvi~~~r~~~~~~~k~ 243 (761)
T PRK12862 164 FHDDQHGTAIIVAAAVLNGLKVVGKDIEDVKLVASGAGAAALACLDLLVSLGVKRENIWVTDIKGVVYEGRTELMDPWKA 243 (761)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHCCCHHHEEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCHHHHH
T ss_conf 33776518999999999999984885667189997887889999999998399810179994678777887743079999
Q ss_pred HHHHCCCCCCHHHHCCCCCEEEECCCCCCCCHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHCCCEEECCCCCCCCCCCC
Q ss_conf 77450889888886058837862578877898899721899779991787200998899851898798058878877435
Q gi|254780137|r 254 VYAQKSGPKPLSETMNNADVFLGLSVAGALDPAILKFMAEKPLIMVLANPNPEAMPDEIKKVRPDAMICTGRSDFSNQVN 333 (779)
Q Consensus 254 ~~a~~~~~~~l~ea~~~adv~iG~S~~g~~t~e~v~~M~~~PiIfaLsNP~pEi~p~~a~~~~g~aivatGrs~~pnQ~N 333 (779)
+||..|+.++|.|+++|||||||+|+||++|+|||++|+++|||||||||+|||+|++++++++++|+||||||||||+|
T Consensus 244 ~~a~~t~~~~l~ea~~gADvfig~S~~~~~~~e~v~~Ma~~pivfalANP~PEI~p~~a~~~r~~~i~aTGRSD~pNQvN 323 (761)
T PRK12862 244 RYAQKTDARTLAEVIEGADVFLGLSAAGVLKPEMVKKMAPRPLILALANPTPEILPEEARAVRPDAIIATGRSDYPNQVN 323 (761)
T ss_pred HHHHCCCCCCHHHHHCCCCEEEECCCCCCCCHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHCCCEEEECCCCCCCCCCC
T ss_conf 99650796659999668988998068999999999852737778625898987599999874462798348889854011
Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 03455665456751373002678999999999987203313667741387676667522366654677867988889998
Q gi|254780137|r 334 NVLCFPYIFRGALDCGATAITEEMKVAAARAMAVLVRDVPPDVVFDNFAKESPVFGPNYLIPSPFDPNLISYIAPAVAKA 413 (779)
Q Consensus 334 N~l~FPgif~Gal~~~A~~Itd~M~~aAa~alA~la~~~~~~~~~~~~~~~~~~~g~~yiiP~~fd~r~~~~va~AVa~a 413 (779)
|+|+|||||||||||||++|||+||+||++|||+||++++|++|..+|++++++||||||||+||||||+++||+|||+|
T Consensus 324 Nvl~FP~iFRGaLDvrA~~In~~Mk~Aa~~alA~la~~~~~~~v~~ay~~~~~~fg~~yiip~pfdprl~~~v~~ava~a 403 (761)
T PRK12862 324 NVLCFPYIFRGALDVGATTINEEMKIAAVRAIAELAREEQSDVVAAAYGGEDLSFGPDYLIPKPFDPRLILKIAPAVAQA 403 (761)
T ss_pred HHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHH
T ss_conf 11124087766886072308899999999999987402799999997177665668870527898974265653999999
Q ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCHHH
Q ss_conf 74213223543225899999998620125688999999721589469982477404679999998527508999559899
Q gi|254780137|r 414 AEEAGVASSPIEDYEVYRDSLKRFSFPGRSLMKKIFSIAKGTDSKRILFSAGEDERVLRATQILIKENIARPVLIGSLLT 493 (779)
Q Consensus 414 A~~sGvAr~pi~d~~~Y~~~L~~rl~~s~~~mr~i~~~AK~~~pKRIVfaEgeD~rVLrAA~~~~eeGia~PILVG~~e~ 493 (779)
||+|||||+||.||++||++|++|+++|..+||+||++||+ +|||||||||||+||||||+++++|||++||||||+++
T Consensus 404 a~~sgva~~~i~d~~~y~~~L~~~~~~s~~~mr~I~erAK~-~PKRIVFaEGEDeRVLrAA~~~~~EGIa~PILlG~~~~ 482 (761)
T PRK12862 404 AMDSGVATRPIEDMDAYREQLNQFVYHSGLIMKPVFAAAKA-APKRVVFAEGEDERVLRAAQVVVDEGLAKPILIGRPAV 482 (761)
T ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHH-CCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCHHH
T ss_conf 98628876885679999999998867308899999999974-88669835887778999999999759961699679999
Q ss_pred HHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHCCCCCEEECCCCC
Q ss_conf 99999984987665468423062025567899999999876379998999999862535678999865721001004467
Q gi|254780137|r 494 IQDNIRRHDLQIIATKDFDVIDLNNKQSLKDYVDSYRSLSAEKGISLDSIYDLLRSNTTLLGSLALKRGEGDGMICMCDS 573 (779)
Q Consensus 494 I~~~~~~~gL~l~~~~dieIidp~~~~~~~~ya~~l~~~~~RKG~~~~~A~~~vr~d~~~faa~MV~~G~AD~lI~G~~~ 573 (779)
|++.++++||+++...++||+||.+++++++||+.||++|||||+++++|+++|++|+||||+|||++|+||+||||++
T Consensus 483 I~~~a~~lGL~L~~~~~ieIIdP~~s~~~~~Y~~~l~elrqRKG~t~~~A~~~mr~d~nyFaAmMV~~GdADgmVsG~~- 561 (761)
T PRK12862 483 IEARIERAGLRLRPGQDFEVVNPEDDPRYRDYWDTYHALMGRKGVTPELARREVRRRTTLIGAMMVKRGEADAMICGTE- 561 (761)
T ss_pred HHHHHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCEEECCCC-
T ss_conf 9999998699977677844568774589999999999998645999999999985084048888987588887823888-
Q ss_pred CCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC
Q ss_conf 77404677777630687668501210013557773499974736889898899999999999999818997299997025
Q gi|254780137|r 574 ESGYNSHLTDIHKIIGMGLGISHYSAMSMCIVRDNFLFFTDTHVSAEPSAMEIADSTILASQAICSLGMRPKVSVLFHSN 653 (779)
Q Consensus 574 t~~y~~~lr~~~~vIG~~~g~~~vs~~~il~~~~~~lFiaDtaVNi~PtaEqLAdIa~~aa~~ar~lGiePkVAlLS~Sn 653 (779)
++|.+++|+++++||+++|.++++++|+|+++++++||+||+||++||+||||||++++++++|+||++||||||||||
T Consensus 562 -~sya~tLRpalqIIg~~pG~~~vSs~~imi~~~g~lF~ADt~Vn~~PtAEqLAdIAi~aA~~ar~fGiePRVAmLSfSn 640 (761)
T PRK12862 562 -GRYERHLEFVLQVIGKRPGVRVYAAMSLLILPGRTLFLADTHVNEDPTAEELAEITILAAEEVRRFGIEPKVALLSHSN 640 (761)
T ss_pred -CCHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf -7879999999997367999815899999992896089962656679799999999999999999839985068881477
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCHHHHCCHHHHHHCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCC
Q ss_conf 57888977899999999998737995998673046532989896308998777777778818912888999999986598
Q gi|254780137|r 654 SGSHCIKSSLKMRDSFEKICELSKNLEVDAIVQEEVCLSEIFCDKDVPNTSSSQDAQLLVFPNIDSANIALEMAKSVTNG 733 (779)
Q Consensus 654 fGs~~~~s~~kvr~A~eil~~~~pd~~VDGemq~D~AL~~~ia~~K~p~S~laG~ANVLIfPnLeAaNI~yKllq~lgga 733 (779)
|||++++++.|||+|++++++++|||+||||||+|+||+++++++|||||+|+|+|||||||||+||||+||++|++||+
T Consensus 641 fGS~~~~~~~KVreA~~il~er~Pdl~vDGEMQ~DaAL~~~v~~~k~P~S~LaG~ANVLIFPnLdAaNIaYKLlqrlgga 720 (761)
T PRK12862 641 FGSSDSPSARKMREALEILRERAPDLEVDGEMHGDAALDEELRKRIFPDSRLEGEANLLVFPNLDAANIAYNLLKTAAGA 720 (761)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCHHHHCCHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCC
T ss_conf 78999963799999999999768998883267474654999999548489678889389889960778999999996298
Q ss_pred EEECHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 68714431458987987876389889999999999999698
Q gi|254780137|r 734 LHIGTLLLGAALPVHIVPSSVSVREIIDMVALVMASNNSNS 774 (779)
Q Consensus 734 ~aiGPIL~G~~kPV~ilsr~~Sv~dIvn~aAlA~~~A~~~~ 774 (779)
.+|||||+|++||||++|||||++||+||++||++|||+.+
T Consensus 721 ~aIGPIL~GL~kPV~~Lsrg~Sv~dIvNmaAIaavdAqa~~ 761 (761)
T PRK12862 721 LAVGPILLGAAKPVHILTPSATVRRIVNMTALAVADANAVR 761 (761)
T ss_pred EEECHHHHCCCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 69772554679756457999869999999999999742479
No 3
>PRK12861 malic enzyme; Reviewed
Probab=100.00 E-value=0 Score=2199.19 Aligned_cols=756 Identities=48% Similarity=0.781 Sum_probs=746.0
Q ss_pred CHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEECCCC
Q ss_conf 31469999999840589972799850434885572143073057999999988998887513584799981785002542
Q gi|254780137|r 16 EGDSLFKQALLYHQYPSPGKLEVNATKMLNDQKDLSLAYSPGVAAPSMMIAEDPSKAAMYTNRSNLVAVVSNGSAVLGLG 95 (779)
Q Consensus 16 ~~~~~~~~al~~h~~~~~gk~~~~~~~~~~~~~dl~~~ytpgva~~~~~i~~~~~~~~~~t~~~n~vaVvtdGt~vLGLG 95 (779)
+++++|++||+||+.++||||+|.||||+.||+|||||||||||+||++|++||+.+|+||+|||+||||||||+|||||
T Consensus 1 ~~~~~~~~al~~h~~~~~gk~~~~~~~~~~~~~dlslayspgva~~c~~i~~~~~~~~~yt~~~n~vavis~gtavlglg 80 (762)
T PRK12861 1 QTETQQQAALDYHEFPTPGKISVVASKPLVTQRDLALAYTPGVASVCEEIAADPLNAHRFTSRGNLVGVITNGTAVLGLG 80 (762)
T ss_pred CCHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHCCCCCCHHHHHHHHHCHHHHHHHHCCCCEEEEEECCCEECCCC
T ss_conf 96478999998646899973799745777876663040488428999999869798987621475699996895221587
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCEEEHHHCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 20510583001008999986269852654238898899999998708884606222064801579999999871894216
Q gi|254780137|r 96 DIGPLASKPVMEGKAVLFKKFAGINVFDIEINAKDVDTMVSTIVALEPTFGGINLEDIKAPECFEVERILSQKLKIPFLH 175 (779)
Q Consensus 96 diG~~a~~pvmeGK~~L~k~~agid~~~i~~~~~d~~e~i~~v~~~~p~fg~i~lEDi~~p~~f~i~~~l~~~~~ipvf~ 175 (779)
||||+||+||||||++|||+|||||+||||+|++||||||++|+.++|||||||||||++|+||+||+|||++|+|||||
T Consensus 81 ~ig~~a~~pvmegk~~lfk~fa~id~~~i~~~~~d~~~~i~~v~~~~ptfgginledi~ap~cf~ie~~l~~~~~ipv~h 160 (762)
T PRK12861 81 NIGALASKPVMEGKAVLFKKFAGIDVFDIEINETDPDKLVDIIAGLEPTFGGINLEDIKAPECFTVERKLRERMKIPVFH 160 (762)
T ss_pred CCCHHHCCCCCCCHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCCCCCCHHHCCCCCCHHHHHHHHHHCCCCEEC
T ss_conf 76601047631017788887649982544208899899999999858875623798768974027999999867998231
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHH
Q ss_conf 87721899999999999997098822411787425425678999999819885758999559603078733266788977
Q gi|254780137|r 176 DDQHGTAVTVTAATLNGMKLVGKKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVY 255 (779)
Q Consensus 176 DD~qGTa~v~lA~llnAl~~~gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~ 255 (779)
|||||||||++|||+|||+++||+++|+|||++|||+||++|++||+++|++++|||||||+|+||++|++.++++|.+|
T Consensus 161 ddqhgtaii~~a~l~nal~~~~k~~~~~kiv~~GaGaa~ia~~~l~~~~G~~~~ni~~~D~~G~i~~~r~~~~~~~k~~~ 240 (762)
T PRK12861 161 DDQHGTAITVAAAFINGLKVVGKSIKEVKVVTSGAGAAALACLDLLVDLGLPVENIWVTDIEGVVYRGRTTLMDPAKERF 240 (762)
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCHHHEEEEEECCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHH
T ss_conf 67760899999999999998287565616999687788999999999839995558999477851189865357999999
Q ss_pred HHCCCCCCHHHHCCCCCEEEECCCCCCCCHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHCCCEEECCCCCCCCCCCCHH
Q ss_conf 45088988888605883786257887789889972189977999178720099889985189879805887887743503
Q gi|254780137|r 256 AQKSGPKPLSETMNNADVFLGLSVAGALDPAILKFMAEKPLIMVLANPNPEAMPDEIKKVRPDAMICTGRSDFSNQVNNV 335 (779)
Q Consensus 256 a~~~~~~~l~ea~~~adv~iG~S~~g~~t~e~v~~M~~~PiIfaLsNP~pEi~p~~a~~~~g~aivatGrs~~pnQ~NN~ 335 (779)
|.+|+.++|.|+++|||||||+|++|++|+|||++|+++|||||||||+|||+|++++++++++|+||||||||||+||+
T Consensus 241 a~~t~~~~l~ea~~gaDvfiG~S~~~~~~~~mv~~Ma~~pivfalANP~PEI~p~~a~~~r~~~i~aTGRSD~pNQvNNv 320 (762)
T PRK12861 241 AQETDARTLAEVIGGADVFLGLSAGGVLKAEMLKAMAARPLILALANPTPEIFPELAHATRDDVVIATGRSDYPNQVNNV 320 (762)
T ss_pred HHCCCCCCHHHHHCCCCEEEECCCCCCCCHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHCCCEEEECCCCCCCCCCCCE
T ss_conf 85689777999837898899767899899999985377876997269998889899854168689834887885312453
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 45566545675137300267899999999998720331366774138767666752236665467786798888999874
Q gi|254780137|r 336 LCFPYIFRGALDCGATAITEEMKVAAARAMAVLVRDVPPDVVFDNFAKESPVFGPNYLIPSPFDPNLISYIAPAVAKAAE 415 (779)
Q Consensus 336 l~FPgif~Gal~~~A~~Itd~M~~aAa~alA~la~~~~~~~~~~~~~~~~~~~g~~yiiP~~fd~r~~~~va~AVa~aA~ 415 (779)
|||||||||||||||++|||+||+||++|||+||++++|++|+.||+++.++||+|||||+||||||+++|++|||||||
T Consensus 321 L~FP~iFRGaLdv~A~~In~~Mk~Aa~~ala~la~~~~~~~v~~ay~~~~~~fg~~y~ip~pfd~rl~~~v~~ava~aa~ 400 (762)
T PRK12861 321 LCFPYIFRGALDVGATTITREMEIAAVHAIAGLAEEEQNEVVAAAYGAYDVSFGPQYLIPKPFDPRLIVRIAPAVAKAAM 400 (762)
T ss_pred EECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHCHHHHHHHH
T ss_conf 20418776687606021889999999999988743788899999737876567877416899996544310599999998
Q ss_pred HCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHC----CCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCH
Q ss_conf 213223543225899999998620125688999999721----5894699824774046799999985275089995598
Q gi|254780137|r 416 EAGVASSPIEDYEVYRDSLKRFSFPGRSLMKKIFSIAKG----TDSKRILFSAGEDERVLRATQILIKENIARPVLIGSL 491 (779)
Q Consensus 416 ~sGvAr~pi~d~~~Y~~~L~~rl~~s~~~mr~i~~~AK~----~~pKRIVfaEgeD~rVLrAA~~~~eeGia~PILVG~~ 491 (779)
+|||||+||.||++||++|++|+++|+.+||+||++||+ .+|||||||||||+||||||+++++|||++||||||+
T Consensus 401 ~sgva~~~i~d~~~Y~~~L~~rl~~s~~~mr~i~~~ak~~~r~~~pKRIVFaEGEdeRVLRAAq~~~dEGia~PILIGr~ 480 (762)
T PRK12861 401 EGGVATRPLADLDAYVEQLQQFVYHSGAFMKPLFATARQLVRDGGKARIVFTEGEDERVLRAVQVIVDEKLARPILVGRP 480 (762)
T ss_pred HCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCH
T ss_conf 62876688246999999999776723889999999997542356874699248877689999999997498428997299
Q ss_pred HHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHCCCCCEEECCC
Q ss_conf 99999999849876654684230620255678999999998763799989999998625356789998657210010044
Q gi|254780137|r 492 LTIQDNIRRHDLQIIATKDFDVIDLNNKQSLKDYVDSYRSLSAEKGISLDSIYDLLRSNTTLLGSLALKRGEGDGMICMC 571 (779)
Q Consensus 492 e~I~~~~~~~gL~l~~~~dieIidp~~~~~~~~ya~~l~~~~~RKG~~~~~A~~~vr~d~~~faa~MV~~G~AD~lI~G~ 571 (779)
++|++.++++||+++..+++||+||++++++++||+.||++|+|||+++++|++++++++||||+|||++|+||+||||+
T Consensus 481 e~I~~~i~~lGL~L~~~~dieIiDP~~s~r~~~Ya~~y~elrqRKGvt~~~Ar~~vr~~~n~FgAmMV~~GdADgMV~G~ 560 (762)
T PRK12861 481 EVLLARIERFGLRLRLGQDVEVTNPEYDERFPQYWTTYWELRCRDGISKEMARVEMRRRLTLIGAMMVRLGDADGMICGT 560 (762)
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHCCCCCEEECCC
T ss_conf 99999999819996656665301788650489999999999752799899999997358510678798738877784378
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf 67774046777776306876685012100135577734999747368898988999999999999998189972999970
Q gi|254780137|r 572 DSESGYNSHLTDIHKIIGMGLGISHYSAMSMCIVRDNFLFFTDTHVSAEPSAMEIADSTILASQAICSLGMRPKVSVLFH 651 (779)
Q Consensus 572 ~~t~~y~~~lr~~~~vIG~~~g~~~vs~~~il~~~~~~lFiaDtaVNi~PtaEqLAdIa~~aa~~ar~lGiePkVAlLS~ 651 (779)
+ ++|.+++++++++||+++|++++++|++|+++++++||+||+||++||+|||||||+++++++|+||++||||||||
T Consensus 561 t--~~ya~~LrpalqVIG~~pg~~~vs~~~lmi~~~~~lF~ADT~Vn~~PtAEqLAeIAi~aA~~ar~fGiePRVAmLSf 638 (762)
T PRK12861 561 V--GEYHNHLRFVDEVIGRKPGASTYAAMNILLLDQRTVALVDTHVNDNPDAEQIAEFTIAAARQMEWLNLTPKVALLSR 638 (762)
T ss_pred C--CCHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEC
T ss_conf 8--77099999999961889998447888899838962899726254587999999999999999998399973899805
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCHHHHCCHHHHHHCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHC
Q ss_conf 25578889778999999999987379959986730465329898963089987777777788189128889999999865
Q gi|254780137|r 652 SNSGSHCIKSSLKMRDSFEKICELSKNLEVDAIVQEEVCLSEIFCDKDVPNTSSSQDAQLLVFPNIDSANIALEMAKSVT 731 (779)
Q Consensus 652 SnfGs~~~~s~~kvr~A~eil~~~~pd~~VDGemq~D~AL~~~ia~~K~p~S~laG~ANVLIfPnLeAaNI~yKllq~lg 731 (779)
|||||++++++.|||+|++++++++|||+||||||+|+|||+++++++||||+|+|+|||||||||+||||+|||+|+++
T Consensus 639 SnFGS~~~~~~~KVreAveil~er~PdlevDGEMQ~DaAL~~~v~~~~~PfS~L~G~ANVLIfPnLdAANIaYKLlq~~~ 718 (762)
T PRK12861 639 SNFGSGSAASGVKMRRALEIVREQAPDIEADGEMHGDCALDEGLRARLLPMSPLKGAANLLVCPNVDAGNIAYNLLKTEA 718 (762)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCHHCCHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHC
T ss_conf 78999999715799999999997489968833787141058999985581896778784898899617899999999963
Q ss_pred CCE-EECHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 986-871443145898798787638988999999999999969
Q gi|254780137|r 732 NGL-HIGTLLLGAALPVHIVPSSVSVREIIDMVALVMASNNSN 773 (779)
Q Consensus 732 ga~-aiGPIL~G~~kPV~ilsr~~Sv~dIvn~aAlA~~~A~~~ 773 (779)
|+. +|||||+|++||||++|||||++|||||+|||+++||.+
T Consensus 719 G~~vaIGPIL~Gl~KPVhiLsrgaSV~dIVNmaAIAavdAq~n 761 (762)
T PRK12861 719 GSNVAVGPFLLGVNAPVNILTSSATVRRIVNMAALTVIEANRN 761 (762)
T ss_pred CCCCEECHHHHCCCCCCEECCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 9985556175568986034899987899999999999986405
No 4
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=100.00 E-value=0 Score=1138.55 Aligned_cols=417 Identities=52% Similarity=0.804 Sum_probs=400.4
Q ss_pred CCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEECCC
Q ss_conf 53146999999984058997279985043488557214307305799999998899888751358479998178500254
Q gi|254780137|r 15 QEGDSLFKQALLYHQYPSPGKLEVNATKMLNDQKDLSLAYSPGVAAPSMMIAEDPSKAAMYTNRSNLVAVVSNGSAVLGL 94 (779)
Q Consensus 15 ~~~~~~~~~al~~h~~~~~gk~~~~~~~~~~~~~dl~~~ytpgva~~~~~i~~~~~~~~~~t~~~n~vaVvtdGt~vLGL 94 (779)
+....+++++|++|+++.+|||++.+++|+++++||+++||||||+||++|++||+.+|+||+|||+|||||||||||||
T Consensus 12 ~~~~~~~~~aL~~h~~~~~gki~~~~~~~~~~~~dl~l~YTPgVa~~~~~i~~d~~~~~~yt~~~n~vaVvTDgtaVLGL 91 (432)
T COG0281 12 EQYEQLKTEALDKHEYLDPGKILIYPTVPLHTQEDLPLAYTPGVAEACKAISEDPRKAYSYTARGNLVAVVTDGTAVLGL 91 (432)
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHCCCCCCCCHHHHHHHHHHCCCHHHHCCCCCCEEEEEECCCEEECC
T ss_conf 98853004668875467898289997157667765670227736999999986802264337878649999789425215
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCEEEHHHCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 22051058300100899998626985265423889889999999870888460622206480157999999987189421
Q gi|254780137|r 95 GDIGPLASKPVMEGKAVLFKKFAGINVFDIEINAKDVDTMVSTIVALEPTFGGINLEDIKAPECFEVERILSQKLKIPFL 174 (779)
Q Consensus 95 GdiG~~a~~pvmeGK~~L~k~~agid~~~i~~~~~d~~e~i~~v~~~~p~fg~i~lEDi~~p~~f~i~~~l~~~~~ipvf 174 (779)
|||||.||+||||||++|||+|||||+||||||+.|++||+++|++++|+|||||||||++|+||+||++||++++||||
T Consensus 92 GniGp~ag~pVmeGKa~Lfk~faGid~~pI~ld~~~~~ei~~~Vkal~p~FgginLedi~ap~cf~ie~~lr~~~~IPvF 171 (432)
T COG0281 92 GNIGPLAGKPVMEGKAVLFKAFAGIDVLPIELDVGTNNEIIEFVKALEPTFGGINLEDIDAPRCFAIEERLRYRMNIPVF 171 (432)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHCCCCCCC
T ss_conf 65331137511252899998734997122676379828999999973113798224555563357899998634789834
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCC-CCCHHHH
Q ss_conf 687721899999999999997098822411787425425678999999819885758999559603078733-2667889
Q gi|254780137|r 175 HDDQHGTAVTVTAATLNGMKLVGKKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREK-KFDKWKS 253 (779)
Q Consensus 175 ~DD~qGTa~v~lA~llnAl~~~gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~-~~~~~~~ 253 (779)
||||||||+|++|||+||||++||+|+|+|||++|||+||+||+++|+.+|++++|||+|||+|+|+++|++ .++++|.
T Consensus 172 hDDqqGTaiv~lA~llnalk~~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~l~~~r~~~~~~~~k~ 251 (432)
T COG0281 172 HDDQQGTAIVTLAALLNALKLTGKKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGLLYDGREDLTMNQKKY 251 (432)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCHHHH
T ss_conf 54532799999999999999849972203899967758899999999982898445899816763458864344214678
Q ss_pred HHHH-CCCCCCHHHHCCCCCEEEECCCCCCCCHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHC-CCEEECCCCCCCCCC
Q ss_conf 7745-08898888860588378625788778988997218997799917872009988998518-987980588788774
Q gi|254780137|r 254 VYAQ-KSGPKPLSETMNNADVFLGLSVAGALDPAILKFMAEKPLIMVLANPNPEAMPDEIKKVR-PDAMICTGRSDFSNQ 331 (779)
Q Consensus 254 ~~a~-~~~~~~l~ea~~~adv~iG~S~~g~~t~e~v~~M~~~PiIfaLsNP~pEi~p~~a~~~~-g~aivatGrs~~pnQ 331 (779)
.++. .++.++..+++.+||||||+|++|+||+|||++|+++|||||||||||||+||++++|+ |.+||||||||||||
T Consensus 252 ~~a~~~~~~~~~~~~~~~adv~iG~S~~G~~t~e~V~~Ma~~PiIfalaNP~pEi~Pe~a~~~~~~aaivaTGrsd~PnQ 331 (432)
T COG0281 252 AKAIEDTGERTLDLALAGADVLIGVSGVGAFTEEMVKEMAKHPIIFALANPTPEITPEDAKEWGDGAAIVATGRSDYPNQ 331 (432)
T ss_pred HHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHCCCCEEEECCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCC
T ss_conf 87776514555112136898899767788769999997564987875489973269999964588978998289898643
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 35034556654567513730026789999999999872033136677413876766675223666546778679888899
Q gi|254780137|r 332 VNNVLCFPYIFRGALDCGATAITEEMKVAAARAMAVLVRDVPPDVVFDNFAKESPVFGPNYLIPSPFDPNLISYIAPAVA 411 (779)
Q Consensus 332 ~NN~l~FPgif~Gal~~~A~~Itd~M~~aAa~alA~la~~~~~~~~~~~~~~~~~~~g~~yiiP~~fd~r~~~~va~AVa 411 (779)
+||+|+||||||||||+||++|||+|++|||+|||++++++.+ ++||||+|||+|++++||+|||
T Consensus 332 vNNvL~FPgIfrGaLd~rA~~ItdeM~~AAa~AiA~~~~~~~~---------------~~~iiP~~~d~r~~~~vA~AVa 396 (432)
T COG0281 332 VNNVLIFPGIFRGALDVRAKTITDEMKIAAAEAIADLAREEVL---------------EEYIIPPPFDPRVISRVAVAVA 396 (432)
T ss_pred CCCEEECCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCC---------------CCCCCCCCCCHHHHHHHHHHHH
T ss_conf 4425575500134565065448899999999999862235677---------------6787999765128999999999
Q ss_pred HHHHHCCCCCCCCCCHHHHHHHHHHHHCCHHHHHH
Q ss_conf 98742132235432258999999986201256889
Q gi|254780137|r 412 KAAEEAGVASSPIEDYEVYRDSLKRFSFPGRSLMK 446 (779)
Q Consensus 412 ~aA~~sGvAr~pi~d~~~Y~~~L~~rl~~s~~~mr 446 (779)
++|+++||||+|+.++++|++.++.+++.+...|+
T Consensus 397 ~aA~~~GvA~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (432)
T COG0281 397 KAAMEEGVARRPIDDEEAYEQALEARLWKPEYRMK 431 (432)
T ss_pred HHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC
T ss_conf 99997286667889989999999987456544468
No 5
>PRK13529 malate dehydrogenase; Provisional
Probab=100.00 E-value=0 Score=799.11 Aligned_cols=366 Identities=32% Similarity=0.471 Sum_probs=321.8
Q ss_pred HHHHHHHCCHHHHHHHH---HHHHHHHHH-HHHCCCCE-------------EEEECCCCEECCCCCCCCCCCCCHHHHHH
Q ss_conf 57214307305799999---998899888-75135847-------------99981785002542205105830010089
Q gi|254780137|r 48 KDLSLAYSPGVAAPSMM---IAEDPSKAA-MYTNRSNL-------------VAVVSNGSAVLGLGDIGPLASKPVMEGKA 110 (779)
Q Consensus 48 ~dl~~~ytpgva~~~~~---i~~~~~~~~-~~t~~~n~-------------vaVvtdGt~vLGLGdiG~~a~~pvmeGK~ 110 (779)
+=|.+.|||.|+++|.. |.+.|...| .+..||+. ++|||||+|||||||+|++| |+|..||+
T Consensus 98 e~lPiiYTPTVG~ac~~~s~~~r~prGlyis~~d~g~i~~il~nwp~~~V~~IVVTDGerILGlGDlG~~G-mgI~iGKl 176 (563)
T PRK13529 98 EMMPIIYTPTVGEACERFSHIYRRPRGLFISYPDRDRIDDILRNAPNRDIKLIVVTDGERILGLGDQGIGG-MGIPIGKL 176 (563)
T ss_pred HHCCCEECCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCC-CCCCHHHH
T ss_conf 85880017617999999876416686489602666689999970885670499984673002457656787-76514389
Q ss_pred HHHHHHCCCC---EEEEECCC--------CCH-------------------HHHHHHHHHHCCCCCEEEHHHCCCCHHHH
Q ss_conf 9998626985---26542388--------988-------------------99999998708884606222064801579
Q gi|254780137|r 111 VLFKKFAGIN---VFDIEINA--------KDV-------------------DTMVSTIVALEPTFGGINLEDIKAPECFE 160 (779)
Q Consensus 111 ~L~k~~agid---~~~i~~~~--------~d~-------------------~e~i~~v~~~~p~fg~i~lEDi~~p~~f~ 160 (779)
.||++||||+ ++|||||. +|| ||||++|+..||. ..||||||++++||.
T Consensus 177 ~lYta~aGi~P~~~LPV~LDvGTnNe~LL~DPlYlG~r~~R~~g~~Y~~fidefv~av~~~fP~-~liqfEDF~~~nA~~ 255 (563)
T PRK13529 177 SLYTACGGISPARTLPVVLDVGTNNEQLLNDPLYLGWRHPRITGEEYDEFVDEFVQAVKRRFPN-ALLQFEDFAQKNAMR 255 (563)
T ss_pred HHHHHCCCCCHHHCCCEEEECCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC-CEEEHHCCCCHHHHH
T ss_conf 8876215888422055699538896776359633576788887688999999999999997898-278501079613899
Q ss_pred HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHCEEEEECCCHHHHHHHHHHHHC----CC----CCCCEE
Q ss_conf 9999998718942168772189999999999999709882241178742542567899999981----98----857589
Q gi|254780137|r 161 VERILSQKLKIPFLHDDQHGTAVTVTAATLNGMKLVGKKFSDIKIVTLGAGAAALACLNLLVTM----GV----RRENIW 232 (779)
Q Consensus 161 i~~~l~~~~~ipvf~DD~qGTa~v~lA~llnAl~~~gk~l~~~~iv~~GaGaAg~~~a~ll~~~----g~----~~~~i~ 232 (779)
+++|||+ +||||||||||||+|+|||||||+|++|++|+||||||+|||+||+||+++++.+ |. ++++||
T Consensus 256 lL~rYr~--~~~~FNDDiQGTaaV~LAgll~Alri~g~~l~d~riv~~GAGsAg~GIA~~l~~~~~~~Gls~eeA~~~i~ 333 (563)
T PRK13529 256 LLERYRD--EICTFNDDIQGTAAVTLAGLLAALKIAGEPLSDQRVVFLGAGSAGCGIAEQIVAAMVREGLSEEEARKRFF 333 (563)
T ss_pred HHHHHHH--CCCEECCCCCHHHHHHHHHHHHHHHHHCCCHHHCEEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHCEEE
T ss_conf 9999865--06422453103779999999999998299877847999657748789999999999876999898714399
Q ss_pred EEECCCEEECCCCCCCCHHHHHHHHCCC----------CCCHHHHCC--CCCEEEECCC-CCCCCHHHHHHCC---CCCE
Q ss_conf 9955960307873326678897745088----------988888605--8837862578-8778988997218---9977
Q gi|254780137|r 233 VYDLEGLVYEGREKKFDKWKSVYAQKSG----------PKPLSETMN--NADVFLGLSV-AGALDPAILKFMA---EKPL 296 (779)
Q Consensus 233 ~~D~~Gli~~~r~~~~~~~~~~~a~~~~----------~~~l~ea~~--~adv~iG~S~-~g~~t~e~v~~M~---~~Pi 296 (779)
+||++|||+++|++ ++++|.+||++.+ ..+|.|+++ +||||||+|+ +|+||+|+|++|+ ++||
T Consensus 334 ~~D~~GLl~~~R~d-L~~~k~~fa~~~~~~~~~~~~~~~~~L~evV~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPI 412 (563)
T PRK13529 334 MVDRQGLLTDDMPD-LLDFQKPFAQKREELSGWKTENDGISLLEVVRNVKPTVLIGVSGQPGAFTEEIIKEMAAHCERPI 412 (563)
T ss_pred EEECCCCEECCCCC-CCHHHHHHCCCCHHHCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCE
T ss_conf 99489813579987-60999986688545415455677899999997458988998378999879999999984599988
Q ss_pred EEEECCCCC--CCCHHHHH-HHCCCEEECCCCCCC-----------CCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 999178720--09988998-518987980588788-----------7743503455665456751373002678999999
Q gi|254780137|r 297 IMVLANPNP--EAMPDEIK-KVRPDAMICTGRSDF-----------SNQVNNVLCFPYIFRGALDCGATAITEEMKVAAA 362 (779)
Q Consensus 297 IfaLsNP~p--Ei~p~~a~-~~~g~aivatGrs~~-----------pnQ~NN~l~FPgif~Gal~~~A~~Itd~M~~aAa 362 (779)
||||||||+ ||+|++|+ |+.|++||||| |+| |||+||+|+|||||+|++++||++|||+|++|||
T Consensus 413 IF~LSNPT~~aE~tpeda~~wT~Grai~AtG-SPF~pv~~~G~~~~p~Q~NN~yiFPGiglGa~~~~a~~Itd~M~~aAA 491 (563)
T PRK13529 413 IFPLSNPTSRAEATPEDIIAWTDGRALVATG-SPFAPVEYNGKTYPIGQCNNAYIFPGIGLGVIASGARRVTDEMLMAAA 491 (563)
T ss_pred EEECCCCCCCCCCCHHHHHHHCCCCEEEEEC-CCCCCCCCCCEEECCCCCCEEEECCHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 9867898432558989997411697899968-988871208816556666324665357889998188578899999999
Q ss_pred HHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHH-HHHHHHHHHHHHHHHCCCCCCC-CCCHHHHHHH
Q ss_conf 999987203313667741387676667522366654677-8679888899987421322354-3225899999
Q gi|254780137|r 363 RAMAVLVRDVPPDVVFDNFAKESPVFGPNYLIPSPFDPN-LISYIAPAVAKAAEEAGVASSP-IEDYEVYRDS 433 (779)
Q Consensus 363 ~alA~la~~~~~~~~~~~~~~~~~~~g~~yiiP~~fd~r-~~~~va~AVa~aA~~sGvAr~p-i~d~~~Y~~~ 433 (779)
++||+++.++.. ...+|+|...+-| +..+||.||+++|+++|+|+.| .+|+.+|-++
T Consensus 492 ~aLA~~v~~~~l--------------~~g~l~P~~~~ir~vs~~VA~aVa~~A~~~GlA~~~~~~d~~~~i~~ 550 (563)
T PRK13529 492 HALAECVPLVKP--------------GEGALLPPLEDIREVSRAIAFAVAKAAIEEGLALETSDEDLEQAIED 550 (563)
T ss_pred HHHHHCCCHHHC--------------CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
T ss_conf 999853995455--------------68852799258899999999999999997699889980789999998
No 6
>PTZ00317 malic enzyme; Provisional
Probab=100.00 E-value=0 Score=789.28 Aligned_cols=365 Identities=28% Similarity=0.445 Sum_probs=319.5
Q ss_pred HHHHHHHCCHHHHHHHH---HHHHHHHHH-HHHCCCCE-------------EEEECCCCEECCCCCCCCCCCCCHHHHHH
Q ss_conf 57214307305799999---998899888-75135847-------------99981785002542205105830010089
Q gi|254780137|r 48 KDLSLAYSPGVAAPSMM---IAEDPSKAA-MYTNRSNL-------------VAVVSNGSAVLGLGDIGPLASKPVMEGKA 110 (779)
Q Consensus 48 ~dl~~~ytpgva~~~~~---i~~~~~~~~-~~t~~~n~-------------vaVvtdGt~vLGLGdiG~~a~~pvmeGK~ 110 (779)
+=|.+.|||.|+++|.. |.+.|...| .+..||+. ++|||||+|||||||+|++ ||+|+.||+
T Consensus 97 e~lPivYTPTVG~Ac~~ys~~~r~prGlyis~~d~g~i~~~l~nwp~~~v~~IVVTDGerILGlGDlG~~-GmgI~iGKl 175 (570)
T PTZ00317 97 ETLPIIYTPTVGEACQRYGNLFQRDHGLYLSMQEKGNIRQIMKNLRKENVDVIVITDGSRILGLGDLGAN-GIGISIGKC 175 (570)
T ss_pred HHCCCEECCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCCCEEEEEECCCCEEECCCCCCC-CCCCHHHHH
T ss_conf 8589102761799999987630567647960066668999997378467049999457211202666678-544008889
Q ss_pred HHHHHHCCCC---EEEEECCC--------CCH-------------------HHHHHHHHHHCCCCCEEEHHHCCCCHHHH
Q ss_conf 9998626985---26542388--------988-------------------99999998708884606222064801579
Q gi|254780137|r 111 VLFKKFAGIN---VFDIEINA--------KDV-------------------DTMVSTIVALEPTFGGINLEDIKAPECFE 160 (779)
Q Consensus 111 ~L~k~~agid---~~~i~~~~--------~d~-------------------~e~i~~v~~~~p~fg~i~lEDi~~p~~f~ 160 (779)
.||++||||| ++|||||. +|| ||||++|+..||. ..||||||++++||.
T Consensus 176 ~lYta~~Gi~P~~~LPV~LDvGTnN~~LL~Dp~YlG~r~~R~~g~~Y~~fvdefv~av~~~~P~-~liqfEDF~~~nA~~ 254 (570)
T PTZ00317 176 SLYVAGAGIKPSRVLPVVLDVGTNNEKYLNDPLYLGLREKRLGDEEFYALLDEFMEAASATWPS-AVVQFEDFSNNHCFD 254 (570)
T ss_pred HHHHHHCCCCHHCCCCEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC-EEEEECCCCCHHHHH
T ss_conf 9998715888300587687568883887369744676788887678999999999999987898-289724489544899
Q ss_pred HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHCEEEEECCCHHHHHHHHHHHHC-----CCC----CCCE
Q ss_conf 9999998718942168772189999999999999709882241178742542567899999981-----988----5758
Q gi|254780137|r 161 VERILSQKLKIPFLHDDQHGTAVTVTAATLNGMKLVGKKFSDIKIVTLGAGAAALACLNLLVTM-----GVR----RENI 231 (779)
Q Consensus 161 i~~~l~~~~~ipvf~DD~qGTa~v~lA~llnAl~~~gk~l~~~~iv~~GaGaAg~~~a~ll~~~-----g~~----~~~i 231 (779)
+++|||+ ++|||||||||||+|+||||+||+|++|++++||||||+|||+||+||++++..+ |+. +++|
T Consensus 255 lL~~Yr~--~~~~FNDDiQGTaaV~LAgll~Alritg~~l~d~riv~~GAGsAg~GIA~~l~~~~~~~~Gls~eeA~~~i 332 (570)
T PTZ00317 255 MLERYQK--KYRCFNDDIQGTGAVIAAGFLNAVKLSGVPPLEQRIVFFGAGSAATGVAENIADLAAREYGVSKEEVRKSF 332 (570)
T ss_pred HHHHHHH--CCCEECCCCHHHHHHHHHHHHHHHHHHCCCHHHCEEEEECCCHHHHHHHHHHHHHHHHHCCCCHHHHHCEE
T ss_conf 9999985--37642144213889999999999998499864617999778818999999999998775499989881238
Q ss_pred EEEECCCEEECCCCCCCCHHHHHHHHCC-------CCCCHHHHCC--CCCEEEECCC-CCCCCHHHHHHCC---CCCEEE
Q ss_conf 9995596030787332667889774508-------8988888605--8837862578-8778988997218---997799
Q gi|254780137|r 232 WVYDLEGLVYEGREKKFDKWKSVYAQKS-------GPKPLSETMN--NADVFLGLSV-AGALDPAILKFMA---EKPLIM 298 (779)
Q Consensus 232 ~~~D~~Gli~~~r~~~~~~~~~~~a~~~-------~~~~l~ea~~--~adv~iG~S~-~g~~t~e~v~~M~---~~PiIf 298 (779)
|+|||+|||+++|.+.++++|.+|++.. +..+|.|+++ +|++|||+|+ +|+||+|+|++|+ ++||||
T Consensus 333 ~lvD~~GLl~~~R~d~l~~~k~~~a~~~~~~~~~~~~~~L~evV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIF 412 (570)
T PTZ00317 333 YLVDSKGLVTTTRGDKLASHKVLWARTDISAEDSASLKTLEDVVRFVKPTALIGLGGVGGVFTEEIVKFMASNCERPIIF 412 (570)
T ss_pred EEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCEEE
T ss_conf 99568886668975536599999987415655565634699999622897589727877767799999998559988799
Q ss_pred EECCCCC--CCCHHHHH-HHCCCEEECC----------CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 9178720--09988998-5189879805----------887887743503455665456751373002678999999999
Q gi|254780137|r 299 VLANPNP--EAMPDEIK-KVRPDAMICT----------GRSDFSNQVNNVLCFPYIFRGALDCGATAITEEMKVAAARAM 365 (779)
Q Consensus 299 aLsNP~p--Ei~p~~a~-~~~g~aivat----------Grs~~pnQ~NN~l~FPgif~Gal~~~A~~Itd~M~~aAa~al 365 (779)
||||||+ ||+|++|+ |+.|++|||| ||+++|||+||+|+|||||+|++++||++|||+|++|||+||
T Consensus 413 aLSNPT~~aE~tpeda~~wT~Grai~AtGSPF~pV~~~Gr~~~p~Q~NN~yiFPGiglGal~~~A~~Itd~M~~aAA~aL 492 (570)
T PTZ00317 413 PLSNPTSKAEVTPDNAYKWTNGAAIVASGSPFPPTTVNGKTLKPSQGNNLYIFPGVGLGCAIAQPPYIPQEVLVTAAACL 492 (570)
T ss_pred ECCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCCEEECCEEECCCCCCEEEECHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 77898766898999999752696899827988985149978777765336675267889998288378899999999999
Q ss_pred HHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHH-HHHHHHHHHHHHHHHCCCCCC----CCCCHHHH
Q ss_conf 987203313667741387676667522366654677-867988889998742132235----43225899
Q gi|254780137|r 366 AVLVRDVPPDVVFDNFAKESPVFGPNYLIPSPFDPN-LISYIAPAVAKAAEEAGVASS----PIEDYEVY 430 (779)
Q Consensus 366 A~la~~~~~~~~~~~~~~~~~~~g~~yiiP~~fd~r-~~~~va~AVa~aA~~sGvAr~----pi~d~~~Y 430 (779)
|+++.++.. . ...+.|...+-| +...||.||+++|++.|+|+. |.+|+.+|
T Consensus 493 A~~v~~e~l------------~--~g~l~P~l~~ir~vS~~IA~aV~~~A~~~GlA~~~~p~~~~~~~~~ 548 (570)
T PTZ00317 493 SLLVTPEDL------------A--EGQLYPPLEDIRNISAHVAVDVIEEAQRMGIAKADLPRNRDDLLAL 548 (570)
T ss_pred HHCCCHHHC------------C--CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
T ss_conf 862997566------------7--8861898138899999999999999998599766689986999999
No 7
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=100.00 E-value=0 Score=773.19 Aligned_cols=329 Identities=21% Similarity=0.366 Sum_probs=315.6
Q ss_pred HHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCEEECC
Q ss_conf 62012568899999972158946998247740467999999852750899955989999999984987665468423062
Q gi|254780137|r 437 FSFPGRSLMKKIFSIAKGTDSKRILFSAGEDERVLRATQILIKENIARPVLIGSLLTIQDNIRRHDLQIIATKDFDVIDL 516 (779)
Q Consensus 437 rl~~s~~~mr~i~~~AK~~~pKRIVfaEgeD~rVLrAA~~~~eeGia~PILVG~~e~I~~~~~~~gL~l~~~~dieIidp 516 (779)
|+.|. .|.-.++++||+ ++||||||||+|+||||||+.+.++||++|||+|++++|++.++++||++ ..++||+||
T Consensus 373 ~~tP~-~F~~~L~~~Ar~-~~krIVlpEg~d~rvl~Aa~~~~~~gia~~iLlG~~~~i~~~~~~~gl~l--~~~~~iidp 448 (702)
T PRK05632 373 RLSPP-AFRYQLTERARA-AKKRIVLPEGDEPRTLKAAAICAERGIADCVLLGNPEEIRRVAAAQGVDL--PDGLEIIDP 448 (702)
T ss_pred CCCHH-HHHHHHHHHHHH-CCCEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCC--CCCCEEECC
T ss_conf 85909-999999999974-79879967989869999999999869805999789999999999759997--579889897
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHCCCCCCCCCE
Q ss_conf 02556789999999987637999899999986253567899986572100100446777404677777630687668501
Q gi|254780137|r 517 NNKQSLKDYVDSYRSLSAEKGISLDSIYDLLRSNTTLLGSLALKRGEGDGMICMCDSESGYNSHLTDIHKIIGMGLGISH 596 (779)
Q Consensus 517 ~~~~~~~~ya~~l~~~~~RKG~~~~~A~~~vr~d~~~faa~MV~~G~AD~lI~G~~~t~~y~~~lr~~~~vIG~~~g~~~ 596 (779)
+ +.+++||+.||++|+|||++.++|+++|+ |++|||+|||+.|+|||||||+++| |.+++|+++++||+++|.+.
T Consensus 449 ~--~~~~~y~~~~~~lr~~kG~t~~~A~~~~~-~~~~fg~mmv~~g~aDg~vsG~~~t--t~~~irpalqii~~~pg~~~ 523 (702)
T PRK05632 449 E--EVRERYVAPLVELRKHKGLTEEVAREQLE-DNVVLGTMMLALGEVDGLVSGAVHT--TANTIRPALQLIKTAPGSSL 523 (702)
T ss_pred H--HHHHHHHHHHHHHHHHCCCCHHHHHHHHH-CCHHHHHHHHHCCCCCEEEECCCCC--CHHHHHHHHHHCCCCCCCCE
T ss_conf 1--57999999999997308989999999860-7403899998648988794066768--07777568876477899843
Q ss_pred EEEECCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 21001355777349997473688989889999999999999981899729999702557888977899999999998737
Q gi|254780137|r 597 YSAMSMCIVRDNFLFFTDTHVSAEPSAMEIADSTILASQAICSLGMRPKVSVLFHSNSGSHCIKSSLKMRDSFEKICELS 676 (779)
Q Consensus 597 vs~~~il~~~~~~lFiaDtaVNi~PtaEqLAdIa~~aa~~ar~lGiePkVAlLS~SnfGs~~~~s~~kvr~A~eil~~~~ 676 (779)
+|++|+|+++++++||+||+||++||+|||||||+++++++|+||+||||||||||||||.+++++.|||+|+++++++.
T Consensus 524 vss~f~m~~~~~~l~~~Dc~vn~~P~aeqLa~IA~~sa~~a~~fgi~PrvAmLS~St~~s~~~~~~~kv~~A~~~~~~~~ 603 (702)
T PRK05632 524 VSSVFFMLLPDQVLVYGDCAINPDPTAEQLAEIAIQSADSAAAFGIEPRVAMLSYSTGTSGSGADVEKVREATRLARERR 603 (702)
T ss_pred EEEEEEEEECCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 68899999579438996030258979999999999999999981999609997356899999942589999999999868
Q ss_pred CCCEEECCCCHHHHCCHHHHHHCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCEEECHHHCCCCCCEEECCCCCCH
Q ss_conf 99599867304653298989630899877777777881891288899999998659868714431458987987876389
Q gi|254780137|r 677 KNLEVDAIVQEEVCLSEIFCDKDVPNTSSSQDAQLLVFPNIDSANIALEMAKSVTNGLHIGTLLLGAALPVHIVPSSVSV 756 (779)
Q Consensus 677 pd~~VDGemq~D~AL~~~ia~~K~p~S~laG~ANVLIfPnLeAaNI~yKllq~lgga~aiGPIL~G~~kPV~ilsr~~Sv 756 (779)
||++||||||+|+|++++++++|+|+|+|+|+|||||||||+||||+||++|+++|+.+|||||+|++||||+|||||||
T Consensus 604 pdl~idGe~q~DaA~~~~v~~~k~p~s~v~g~AnvlifP~L~~gNi~yk~~qr~~~~~aiGPil~Gl~kPv~~lsrg~~v 683 (702)
T PRK05632 604 PDLLIDGPLQYDAAVDPSVARSKAPNSPVAGRATVFIFPDLNTGNTTYKAVQRSAGAVSIGPMLQGLRKPVNDLSRGALV 683 (702)
T ss_pred CCCEECCCCCCCEECCHHHHHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHCCCEEECHHHHCCCCCHHHCCCCCCH
T ss_conf 99876146523100589999966868977898838989997546699999999639878763766658527556999978
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 889999999999999698
Q gi|254780137|r 757 REIIDMVALVMASNNSNS 774 (779)
Q Consensus 757 ~dIvn~aAlA~~~A~~~~ 774 (779)
+||+||+||+++|||...
T Consensus 684 ~dIvn~~aitaiqaq~~~ 701 (702)
T PRK05632 684 DDIVYTIALTAIQAQQQA 701 (702)
T ss_pred HHHHHHHHHHHHHHHHHC
T ss_conf 999999999999987510
No 8
>pfam01515 PTA_PTB Phosphate acetyl/butaryl transferase. This family contains both phosphate acetyltransferase and phosphate butaryltransferase. These enzymes catalyse the transfer of an acetyl or butaryl group to orthophosphate.
Probab=100.00 E-value=0 Score=742.25 Aligned_cols=318 Identities=30% Similarity=0.499 Sum_probs=309.9
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHH
Q ss_conf 68899999972158946998247740467999999852750899955989999999984987665468423062025567
Q gi|254780137|r 443 SLMKKIFSIAKGTDSKRILFSAGEDERVLRATQILIKENIARPVLIGSLLTIQDNIRRHDLQIIATKDFDVIDLNNKQSL 522 (779)
Q Consensus 443 ~~mr~i~~~AK~~~pKRIVfaEgeD~rVLrAA~~~~eeGia~PILVG~~e~I~~~~~~~gL~l~~~~dieIidp~~~~~~ 522 (779)
++|++|+++||+ +|||||||||||+|||+||+++.++||++|||||++++|++.++++||++ .++||+||.+++++
T Consensus 1 s~m~~i~~~ak~-~~krIvf~eged~rvl~Aa~~~~~egi~~PILvG~~~~I~~~~~~~gl~~---~~~eIid~~~~~~~ 76 (319)
T pfam01515 1 SFLERIFERAKS-AKKRIVFPEGEDERVLKAAKELLEEGIADPILIGNEIEIKAKALGLGLDL---SGIEIVDPETSPRD 76 (319)
T ss_pred CHHHHHHHHHHH-CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCC---CCCEEECCCCCHHH
T ss_conf 957999999984-89989995879979999999999869927999889999999999769896---67789888887679
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEECC
Q ss_conf 89999999987637999899999986253567899986572100100446777404677777630687668501210013
Q gi|254780137|r 523 KDYVDSYRSLSAEKGISLDSIYDLLRSNTTLLGSLALKRGEGDGMICMCDSESGYNSHLTDIHKIIGMGLGISHYSAMSM 602 (779)
Q Consensus 523 ~~ya~~l~~~~~RKG~~~~~A~~~vr~d~~~faa~MV~~G~AD~lI~G~~~t~~y~~~lr~~~~vIG~~~g~~~vs~~~i 602 (779)
++||++||++|||||+++++|+++++ +++|||+|||++|+||+||||.++| |.++++++++++|.++|.+++|++++
T Consensus 77 ~~y~~~~~~~~~rkG~~~~~a~~~~~-~~~~~aa~mv~~G~aD~lv~G~~~t--t~~~lr~~l~~ig~~~~~~~~s~~~~ 153 (319)
T pfam01515 77 EEYADEFYELRKHKGMTPEIAREIVR-DPTYFAAMLVKLGEADGLVSGAVNT--TADTLRPALQIIKTLPGVKIVSSVFI 153 (319)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHH-HHHHHHHHHHHCCCCCEEEECCCCC--HHHHHHHHHHHHCCCCCCCEEEEEEE
T ss_conf 99999999997238999999999997-6699999999778988782089888--29999999998657899845999998
Q ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCC-CCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEE
Q ss_conf 557773499974736889898899999999999999818-9972999970255788897789999999999873799599
Q gi|254780137|r 603 CIVRDNFLFFTDTHVSAEPSAMEIADSTILASQAICSLG-MRPKVSVLFHSNSGSHCIKSSLKMRDSFEKICELSKNLEV 681 (779)
Q Consensus 603 l~~~~~~lFiaDtaVNi~PtaEqLAdIa~~aa~~ar~lG-iePkVAlLS~SnfGs~~~~s~~kvr~A~eil~~~~pd~~V 681 (779)
|.++++++||+||+||++||+|||+||++++++++|.|| ++|||||||||||||+++|++.++++|+++++++.||++|
T Consensus 154 m~~~~~~lf~aD~~Vn~~P~~eqla~Ia~~aa~~~~~lg~~~PkVA~LS~S~~gs~~~~~~~~~~~a~~~~~~~~pd~~v 233 (319)
T pfam01515 154 MLLPDRLLFFTDCAVNPNPTAEELAEIALNAAKTAKALGNIEPRVAMLSYSTFGSGKGESVEKVREATKIAKEKAPDLVV 233 (319)
T ss_pred EEECCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCEE
T ss_conf 77179539997063666989999999999999999984589970455420256799995289999999999736999633
Q ss_pred ECCCCHHHHCCHHHHHHCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCEEECHHHCCCCCCEEECCCCCCHHHHHH
Q ss_conf 86730465329898963089987777777788189128889999999865986871443145898798787638988999
Q gi|254780137|r 682 DAIVQEEVCLSEIFCDKDVPNTSSSQDAQLLVFPNIDSANIALEMAKSVTNGLHIGTLLLGAALPVHIVPSSVSVREIID 761 (779)
Q Consensus 682 DGemq~D~AL~~~ia~~K~p~S~laG~ANVLIfPnLeAaNI~yKllq~lgga~aiGPIL~G~~kPV~ilsr~~Sv~dIvn 761 (779)
|||||+|+|+|++++++|+|+|+|+|+||||||||||||||+||++|+++|++++||||+|+++|||++|||+|++||+|
T Consensus 234 dGemq~D~Al~~~~~~~k~p~s~l~G~AnvLIfPnl~agNI~yK~~~~l~~~~~iGpil~G~~~Pv~~~sr~~s~~di~n 313 (319)
T pfam01515 234 DGELQLDAAIVEEVAAQKAPDSPVAGKANVLVFPDLEAGNIGYKIAQRLAGAEAIGPILQGLAKPVNDLSRGASVEDIVN 313 (319)
T ss_pred CCCCHHHHHCCHHHHHHHCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCEEECHHHHCCCCCEEECCCCCCHHHHHH
T ss_conf 68630777649999997489998789888899289488899999999845986972355467997797899888899999
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254780137|r 762 MVALVM 767 (779)
Q Consensus 762 ~aAlA~ 767 (779)
|++||+
T Consensus 314 ~~alaA 319 (319)
T pfam01515 314 TIAITA 319 (319)
T ss_pred HHHHHC
T ss_conf 999859
No 9
>PRK09653 eutD phosphotransacetylase; Reviewed
Probab=100.00 E-value=0 Score=733.86 Aligned_cols=323 Identities=24% Similarity=0.418 Sum_probs=314.0
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHH
Q ss_conf 68899999972158946998247740467999999852750899955989999999984987665468423062025567
Q gi|254780137|r 443 SLMKKIFSIAKGTDSKRILFSAGEDERVLRATQILIKENIARPVLIGSLLTIQDNIRRHDLQIIATKDFDVIDLNNKQSL 522 (779)
Q Consensus 443 ~~mr~i~~~AK~~~pKRIVfaEgeD~rVLrAA~~~~eeGia~PILVG~~e~I~~~~~~~gL~l~~~~dieIidp~~~~~~ 522 (779)
++|++|+++||. +|||||||||||+|||+||+++.++||++|||||++++|++.++++||++ .+|||+||.+++++
T Consensus 2 ~~~~~i~~~ar~-~~krIv~aeged~rvL~Aa~~~~~~gi~~pILvG~~~~I~~~~~~~gl~l---~~~eIidp~~~~~~ 77 (324)
T PRK09653 2 MLFERLKEKALG-KKKKIVLPEGEDERVLEAAKRLQKEGLVEPILLGNPEEIREKALELGVDL---DGIEIIDPHTYPKL 77 (324)
T ss_pred CHHHHHHHHHHH-CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCC---CCCEEECCCCCHHH
T ss_conf 459999999961-89989993879989999999999869958999779999999999769996---57589789985899
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEECC
Q ss_conf 89999999987637999899999986253567899986572100100446777404677777630687668501210013
Q gi|254780137|r 523 KDYVDSYRSLSAEKGISLDSIYDLLRSNTTLLGSLALKRGEGDGMICMCDSESGYNSHLTDIHKIIGMGLGISHYSAMSM 602 (779)
Q Consensus 523 ~~ya~~l~~~~~RKG~~~~~A~~~vr~d~~~faa~MV~~G~AD~lI~G~~~t~~y~~~lr~~~~vIG~~~g~~~vs~~~i 602 (779)
++|++.||++|++| .+.++|++.++ +++|||+|||+.|+||+||||.+++ |.+++++++++||+++|.+++|++++
T Consensus 78 ~~~~~~~~~~r~~k-~~~~~A~~~~~-~~~~~aa~mv~~G~aD~lv~G~~~~--t~~~lr~~l~iig~~~g~~~vS~~~~ 153 (324)
T PRK09653 78 EEFAEAFVERRKGK-ATEEDARKILK-DPNYFGTMLVKMGKADGMVSGAIHS--TADTLRPALQIIKTKPGVKTVSSIFI 153 (324)
T ss_pred HHHHHHHHHHHCCC-CCHHHHHHHHH-CCHHHHHHHHHCCCCCEEECCCCCC--CHHHHHHHHHHHCCCCCCCEEEEEEE
T ss_conf 99999999985688-98999999874-7428999998679987585261020--19999999988425899860368999
Q ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 55777349997473688989889999999999999981899729999702557888977899999999998737995998
Q gi|254780137|r 603 CIVRDNFLFFTDTHVSAEPSAMEIADSTILASQAICSLGMRPKVSVLFHSNSGSHCIKSSLKMRDSFEKICELSKNLEVD 682 (779)
Q Consensus 603 l~~~~~~lFiaDtaVNi~PtaEqLAdIa~~aa~~ar~lGiePkVAlLS~SnfGs~~~~s~~kvr~A~eil~~~~pd~~VD 682 (779)
|..+++++|||||+||++||+|||++|++++++++|.||+||||||||||||||+++|++.++++|+++++++.|||+||
T Consensus 154 m~~~~~~l~~tD~avn~~P~~eqla~Ia~~a~~~~~~lG~ePrVA~LS~S~~gs~~~~s~~~~~~A~~~~~~~~p~~~vd 233 (324)
T PRK09653 154 MVKGDERYIFADCAVNPNPTAQQLAEIAINSAETAKAFGIEPKVAMLSFSTKGSAKGPEVDKVQEATEIAKELAPDLEID 233 (324)
T ss_pred EECCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEC
T ss_conf 96178559995376567989999999999999999985999838861001047988700589999999999668997424
Q ss_pred CCCCHHHHCCHHHHHHCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCEEECHHHCCCCCCEEECCCCCCHHHHHHH
Q ss_conf 67304653298989630899877777777881891288899999998659868714431458987987876389889999
Q gi|254780137|r 683 AIVQEEVCLSEIFCDKDVPNTSSSQDAQLLVFPNIDSANIALEMAKSVTNGLHIGTLLLGAALPVHIVPSSVSVREIIDM 762 (779)
Q Consensus 683 Gemq~D~AL~~~ia~~K~p~S~laG~ANVLIfPnLeAaNI~yKllq~lgga~aiGPIL~G~~kPV~ilsr~~Sv~dIvn~ 762 (779)
||||+|+|+|++++++|+|+|+|+|+||||||||||||||+||++|++||++++||||+|+++|||++|||+|++||+||
T Consensus 234 Gelq~D~Al~~~~a~~k~p~s~vaG~AnvLI~Pnl~agNi~yK~l~~l~~a~~~Gpil~G~~~Pv~~~sr~~sv~di~n~ 313 (324)
T PRK09653 234 GELQFDAAFVPEVAAQKAPGSPVAGKANVFVFPSLEAGNIGYKIAQRLGGFEAVGPILQGLNKPVNDLSRGCSVEDIYNL 313 (324)
T ss_pred CCCHHHHHCCHHHHHHHCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCEEECHHHHCCCCCEEECCCCCCHHHHHHH
T ss_conf 74106665399999851899976898878994881788999999999579838744553778887878998889999999
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999969
Q gi|254780137|r 763 VALVMASNNSN 773 (779)
Q Consensus 763 aAlA~~~A~~~ 773 (779)
+++|++|||.+
T Consensus 314 ~aiaa~~aq~~ 324 (324)
T PRK09653 314 ALITAAQAQNE 324 (324)
T ss_pred HHHHHHHHHCC
T ss_conf 99999996159
No 10
>COG0280 Pta Phosphotransacetylase [Energy production and conversion]
Probab=100.00 E-value=0 Score=732.20 Aligned_cols=324 Identities=30% Similarity=0.503 Sum_probs=314.2
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCEEECCCHH-HHH
Q ss_conf 8899999972158946998247740467999999852750899955989999999984987665468423062025-567
Q gi|254780137|r 444 LMKKIFSIAKGTDSKRILFSAGEDERVLRATQILIKENIARPVLIGSLLTIQDNIRRHDLQIIATKDFDVIDLNNK-QSL 522 (779)
Q Consensus 444 ~mr~i~~~AK~~~pKRIVfaEgeD~rVLrAA~~~~eeGia~PILVG~~e~I~~~~~~~gL~l~~~~dieIidp~~~-~~~ 522 (779)
+|++++++||+ .+||||||||||+|+|+|++.+.++|++.||||||++.|++.++++|++++. |||+||..+ +++
T Consensus 1 ~~~~i~~~a~~-~~kriv~~Eged~rvl~Aa~~~~~~g~~~~ilvg~~~~i~~~~~~~gl~l~~---~eiidp~~~~~~~ 76 (327)
T COG0280 1 FLYRLFERARK-APKRIVLPEGEEERVLRAAQVLAKEGLAKPILVGRPEEIEEVAKALGLDLDG---IEIINPELDPERF 76 (327)
T ss_pred CCHHHHHHHHH-CCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHCCCCCC---CEEECCCCCCHHH
T ss_conf 94478999851-6876981687437999999999865977528974899999999983546564---4786722270668
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEECC
Q ss_conf 89999999987637999899999986253567899986572100100446777404677777630687668501210013
Q gi|254780137|r 523 KDYVDSYRSLSAEKGISLDSIYDLLRSNTTLLGSLALKRGEGDGMICMCDSESGYNSHLTDIHKIIGMGLGISHYSAMSM 602 (779)
Q Consensus 523 ~~ya~~l~~~~~RKG~~~~~A~~~vr~d~~~faa~MV~~G~AD~lI~G~~~t~~y~~~lr~~~~vIG~~~g~~~vs~~~i 602 (779)
++||++||++|+|||+++++|++.+++|+++||+|||++|+||+||||.++| |.+++++++++||+++|++.++++++
T Consensus 77 ~~y~~~~~e~~k~kG~t~~~a~~~~~~d~~~~a~~mv~~g~aD~~v~G~~~t--t~~~lr~~lqii~~~pG~~~~s~v~i 154 (327)
T COG0280 77 EEYVDRLYELRKRKGVTPEDAQELVREDPTVFAAMMVALGEADGLVSGAVHT--TADTLRPALQIIGTRPGVSLVSSVFI 154 (327)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCEEEECCCCC--HHHHHHHHHHHHCCCCCCEEEEEEEE
T ss_conf 9999999999643799999999885448089999999759887897557667--79899889987088898766787899
Q ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCC-CCEE
Q ss_conf 557773499974736889898899999999999999818997299997025578889778999999999987379-9599
Q gi|254780137|r 603 CIVRDNFLFFTDTHVSAEPSAMEIADSTILASQAICSLGMRPKVSVLFHSNSGSHCIKSSLKMRDSFEKICELSK-NLEV 681 (779)
Q Consensus 603 l~~~~~~lFiaDtaVNi~PtaEqLAdIa~~aa~~ar~lGiePkVAlLS~SnfGs~~~~s~~kvr~A~eil~~~~p-d~~V 681 (779)
|+.+++++||+||+||++||+|||+||++++++++|+||++|||||||||||||+++|++.||++|+++++++.| ||+|
T Consensus 155 m~~~~~~l~~~D~avn~~PtaeeladIa~~sa~~a~~fgi~PkVAlLS~St~gs~~~~~~~kv~ea~~i~~~~~~~dl~v 234 (327)
T COG0280 155 MLLPDGTLFFADCAVNPDPTAEELADIAENAAETARRFGIEPKVALLSYSTFGSGKGPSTDKVREATKILRERAPPDLEV 234 (327)
T ss_pred EEECCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCEE
T ss_conf 99379608997133578979999999999999999980898706899754278888810799999999997169756666
Q ss_pred ECCCCHHHHCCHHHHHHCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCEEECHHHCCCCCCEEECCCCCCHHHHHH
Q ss_conf 86730465329898963089987777777788189128889999999865986871443145898798787638988999
Q gi|254780137|r 682 DAIVQEEVCLSEIFCDKDVPNTSSSQDAQLLVFPNIDSANIALEMAKSVTNGLHIGTLLLGAALPVHIVPSSVSVREIID 761 (779)
Q Consensus 682 DGemq~D~AL~~~ia~~K~p~S~laG~ANVLIfPnLeAaNI~yKllq~lgga~aiGPIL~G~~kPV~ilsr~~Sv~dIvn 761 (779)
|||||+|+|++++++++|+|+|+|+|+||||||||||||||+||++|+++++.++||||+|+++|||++|||||++||+|
T Consensus 235 DGelq~DaA~~~~va~~k~p~s~vaG~ANvlVfP~LeagNI~yK~lq~~~~a~avGPil~G~~kPV~~lSrg~sv~dIvn 314 (327)
T COG0280 235 DGELQFDAALVEKVAAKKAPDSPLAGSANVLVFPDLEAGNIGYKLLQRLGGALAVGPILQGLAKPVNDLSRGASVEDIVN 314 (327)
T ss_pred CCCCCHHHHCCHHHHHHHCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHCCCCEECHHHHCCCCCHHHCCCCCCHHHHHH
T ss_conf 06752435539999995389997678777897488217778999999953785560024257665323588898899999
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999969
Q gi|254780137|r 762 MVALVMASNNSN 773 (779)
Q Consensus 762 ~aAlA~~~A~~~ 773 (779)
|++||+++|+.+
T Consensus 315 ~~alaa~qa~~~ 326 (327)
T COG0280 315 MAALAAVQAQTK 326 (327)
T ss_pred HHHHHHHHHHCC
T ss_conf 999999986237
No 11
>KOG1257 consensus
Probab=100.00 E-value=0 Score=688.37 Aligned_cols=368 Identities=31% Similarity=0.487 Sum_probs=320.3
Q ss_pred CHHH-HHHHHCCHHHHHHH---HHHHHHHHHH-HHHCCCC-------------EEEEECCCCEECCCCCCCCCC-CCCHH
Q ss_conf 8557-21430730579999---9998899888-7513584-------------799981785002542205105-83001
Q gi|254780137|r 46 DQKD-LSLAYSPGVAAPSM---MIAEDPSKAA-MYTNRSN-------------LVAVVSNGSAVLGLGDIGPLA-SKPVM 106 (779)
Q Consensus 46 ~~~d-l~~~ytpgva~~~~---~i~~~~~~~~-~~t~~~n-------------~vaVvtdGt~vLGLGdiG~~a-~~pvm 106 (779)
|-++ +-+.|||+|..+|. .|.+.|...| ....||. -..|||||+|||||||+|++| |+||
T Consensus 109 nie~~~PIvYTPTvG~acq~y~~i~r~p~Glfisi~D~Ghi~~~l~nWp~~~V~~IvVTDGerILGLGDlG~~GmgIpv- 187 (582)
T KOG1257 109 NIEELLPIVYTPTVGLACQQYGLIFRRPQGLFISIKDKGHIKQVLKNWPERNVKAIVVTDGERILGLGDLGVNGMGIPV- 187 (582)
T ss_pred HHHHHCCEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHCCCCCEEEEEEECCCCEECCCCCCCCCCCCEE-
T ss_conf 6998588432683889999865652267536998445334999997377126249999679721046435668526320-
Q ss_pred HHHHHHHHHHCCCC---EEEEECCC--------CCH-------------------HHHHHHHHHHCCCCCEEEHHHCCCC
Q ss_conf 00899998626985---26542388--------988-------------------9999999870888460622206480
Q gi|254780137|r 107 EGKAVLFKKFAGIN---VFDIEINA--------KDV-------------------DTMVSTIVALEPTFGGINLEDIKAP 156 (779)
Q Consensus 107 eGK~~L~k~~agid---~~~i~~~~--------~d~-------------------~e~i~~v~~~~p~fg~i~lEDi~~p 156 (779)
||+.||+++|||+ |+|||||. +|| ||||++|+..|..-..||||||.++
T Consensus 188 -gKL~Lyta~~GI~P~~cLPV~LDVGTNNe~Ll~DplYiGLr~~R~~g~eYd~~~dEFm~Av~~~yG~~~lIqFEDF~~~ 266 (582)
T KOG1257 188 -GKLALYTALGGIRPSRCLPVCLDVGTNNEKLLNDPLYIGLRQRRVRGKEYDEFLDEFMEAVVQRYGPNTLIQFEDFANH 266 (582)
T ss_pred -CHHHHHHHHCCCCHHHCEEEEEECCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEHHCCCH
T ss_conf -0788988853887556002798536885887348430022100245317899999999999987486607973201454
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHCEEEEECCCHHHHHHHHHHHHC----CC----CC
Q ss_conf 15799999998718942168772189999999999999709882241178742542567899999981----98----85
Q gi|254780137|r 157 ECFEVERILSQKLKIPFLHDDQHGTAVTVTAATLNGMKLVGKKFSDIKIVTLGAGAAALACLNLLVTM----GV----RR 228 (779)
Q Consensus 157 ~~f~i~~~l~~~~~ipvf~DD~qGTa~v~lA~llnAl~~~gk~l~~~~iv~~GaGaAg~~~a~ll~~~----g~----~~ 228 (779)
++|.++++||. .+++|||||||||+|++||||+|+|++|++|+|++|+|.|||+||+|||+|++.. |. ++
T Consensus 267 nAfrlL~kYr~--~~c~FNDDIQGTaaValAgllaa~rit~~~lsd~~ilf~GAG~A~~GIA~l~v~~m~~~Gl~~eeA~ 344 (582)
T KOG1257 267 NAFRLLEKYRN--KYCMFNDDIQGTAAVALAGLLAALRITGKPLSDHVILFLGAGEAALGIANLIVMAMVKEGLSEEEAR 344 (582)
T ss_pred HHHHHHHHHCC--CCCEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 59999998465--6524545554256999999999999837866534699964745776399999999997499988884
Q ss_pred CCEEEEECCCEEECCCCCCCCHHHHHHHHCCC-CCCHHHHCC--CCCEEEECCC-CCCCCHHHHHHC---CCCCEEEEEC
Q ss_conf 75899955960307873326678897745088-988888605--8837862578-877898899721---8997799917
Q gi|254780137|r 229 ENIWVYDLEGLVYEGREKKFDKWKSVYAQKSG-PKPLSETMN--NADVFLGLSV-AGALDPAILKFM---AEKPLIMVLA 301 (779)
Q Consensus 229 ~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~~-~~~l~ea~~--~adv~iG~S~-~g~~t~e~v~~M---~~~PiIfaLs 301 (779)
++|||+|++|||+++|...+++.+..||++.+ ..+|.|+++ +++||||+|+ +|+||+|+++.| +++|||||||
T Consensus 345 kkIwlvD~~GLi~~~r~~~l~~~~~~fAk~~~~~~~L~e~V~~vKPtvLiG~S~~~g~Fteevl~~Ma~~~erPiIFalS 424 (582)
T KOG1257 345 KKIWLVDSKGLITKGRKASLTEEKKPFAKDHEEIKDLEEAVKEVKPTVLIGASGVGGAFTEEVLRAMAKSNERPIIFALS 424 (582)
T ss_pred CCEEEEECCCEEECCCCCCCCHHHCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCEEEECC
T ss_conf 04899945853632656789834331002773788899999860996798426677657899999998538986588668
Q ss_pred CCC--CCCCHHHHH-HHCCCEEECCCCCC----------CCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 872--009988998-51898798058878----------87743503455665456751373002678999999999987
Q gi|254780137|r 302 NPN--PEAMPDEIK-KVRPDAMICTGRSD----------FSNQVNNVLCFPYIFRGALDCGATAITEEMKVAAARAMAVL 368 (779)
Q Consensus 302 NP~--pEi~p~~a~-~~~g~aivatGrs~----------~pnQ~NN~l~FPgif~Gal~~~A~~Itd~M~~aAa~alA~l 368 (779)
||| .||+||+|+ |+.|++|||||+++ +|+|+||+|+||||++|++.+|++.|+|+|+++||++||++
T Consensus 425 NPT~~aECtae~ay~~t~Gr~ifaSGSPF~pV~~~gK~~~pgQ~NN~yiFPGi~Lg~vlsg~~~i~D~mfl~Aae~LA~~ 504 (582)
T KOG1257 425 NPTSKAECTAEQAYKWTKGRAIFASGSPFPPVEYNGKVYVPGQGNNAYIFPGIGLGVVLSGARRIPDEMFLAAAEALAEQ 504 (582)
T ss_pred CCCCCCCCCHHHHHHHCCCCEEEECCCCCCCCEECCCEECCCCCCEEEECCHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf 98622436899985133885899618999981037817523677504761307799997088417888999999999863
Q ss_pred HCCCCHHHHHHHCCCCCCCCCCCCCCCCCC-CH-HHHHHHHHHHHHHHHHCCCCCC--CCCCHHHHHH
Q ss_conf 203313667741387676667522366654-67-7867988889998742132235--4322589999
Q gi|254780137|r 369 VRDVPPDVVFDNFAKESPVFGPNYLIPSPF-DP-NLISYIAPAVAKAAEEAGVASS--PIEDYEVYRD 432 (779)
Q Consensus 369 a~~~~~~~~~~~~~~~~~~~g~~yiiP~~f-d~-r~~~~va~AVa~aA~~sGvAr~--pi~d~~~Y~~ 432 (779)
..++. +.-|. |.| |+ +- .+..+||.||.+.|++.|.|++ ..+|.++|-+
T Consensus 505 v~~e~------------~~~g~--lyP-pl~~ir~iS~~Ia~aV~~~a~~~glA~~~p~P~d~~~~~~ 557 (582)
T KOG1257 505 VSEEE------------LEKGR--LYP-PLSNIREISANIAAAVLKYAYEEGLATRYPEPKDKEKFIE 557 (582)
T ss_pred CCHHH------------HHCCC--CCC-CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
T ss_conf 79867------------54477--689-7457889999999999999986681214899635999998
No 12
>TIGR00651 pta phosphate acetyltransferase; InterPro: IPR004614 Phosphate acetyltransferase (2.3.1.8 from EC) catalyses the conversion of acetyl-CoA and phosphate to CoA and acetyl phosphate in the last two steps in the conversion of actetae to acetyl-CoA.; GO: 0016407 acetyltransferase activity.
Probab=100.00 E-value=0 Score=685.13 Aligned_cols=302 Identities=26% Similarity=0.441 Sum_probs=291.8
Q ss_pred EEEECCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHH---HHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 99824774046799999985275089995598999999---998498766546842306202556789999999987637
Q gi|254780137|r 460 ILFSAGEDERVLRATQILIKENIARPVLIGSLLTIQDN---IRRHDLQIIATKDFDVIDLNNKQSLKDYVDSYRSLSAEK 536 (779)
Q Consensus 460 IVfaEgeD~rVLrAA~~~~eeGia~PILVG~~e~I~~~---~~~~gL~l~~~~dieIidp~~~~~~~~ya~~l~~~~~RK 536 (779)
||||||+|+|||+||..+.+.||+.||||++++.+... +++.++. ..++.|+||...++++.|++.||++||.|
T Consensus 1 IVlPEg~~~R~LkAa~~l~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~---l~~~~i~~~~~~~~~E~Y~~~~~e~RK~K 77 (322)
T TIGR00651 1 IVLPEGSEPRVLKAAALLAERGIATPVVLGNKEEIVKNAKEAANCNLD---LGKVVIIDPDVSPDRESYAERYYELRKHK 77 (322)
T ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHCCCC---CCEEEEECCCCCHHHHHHHHHHHHHHCCC
T ss_conf 936888976589999999857874312332724677889998732511---37458827867422799999999874155
Q ss_pred CCCHHHHHHHHHHCHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCC---------
Q ss_conf 99989999998625356789998657210010044677740467777763068766850121001355777---------
Q gi|254780137|r 537 GISLDSIYDLLRSNTTLLGSLALKRGEGDGMICMCDSESGYNSHLTDIHKIIGMGLGISHYSAMSMCIVRD--------- 607 (779)
Q Consensus 537 G~~~~~A~~~vr~d~~~faa~MV~~G~AD~lI~G~~~t~~y~~~lr~~~~vIG~~~g~~~vs~~~il~~~~--------- 607 (779)
|++.+.|++.|+ |..+||+|||+.|+|||||||..+|| .+++|+.+|+|++.+|++.+||+|+|...+
T Consensus 78 G~t~~~A~~~l~-D~~~fa~~mv~~g~aDg~VsGa~~tT--a~tlRpaLqiI~T~~Gvk~vSSvFiM~~~~~~~nvdfC~ 154 (322)
T TIGR00651 78 GVTLAQARKQLR-DESYFATMMVALGEADGLVSGAVHTT--ADTLRPALQIIKTLPGVKIVSSVFIMDTNETALNVDFCF 154 (322)
T ss_pred CCCHHHHHHHHH-CHHHHHHHHHHCCCCCEEEECCHHHH--HHHCCHHHHHHCCCCCCEEEEEEEEECCCCCCCEEEECC
T ss_conf 604799999730-45789999987087432550402302--654042566520378850687778865888621010025
Q ss_pred ---CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCC-CCCCEEEEEECCCCCC--CCCCHHHHHHHHHHHHHHCCCC--
Q ss_conf ---3499974736889898899999999999999818-9972999970255788--8977899999999998737995--
Q gi|254780137|r 608 ---NFLFFTDTHVSAEPSAMEIADSTILASQAICSLG-MRPKVSVLFHSNSGSH--CIKSSLKMRDSFEKICELSKNL-- 679 (779)
Q Consensus 608 ---~~lFiaDtaVNi~PtaEqLAdIa~~aa~~ar~lG-iePkVAlLS~SnfGs~--~~~s~~kvr~A~eil~~~~pd~-- 679 (779)
+.|+|+||+||++||+||||+||+++|+++|.|+ +|||||||||||.||+ +++.+.||++|++|+++++|||
T Consensus 155 G~~~~l~F~DCAv~~~P~a~~LAeIA~~sA~sak~f~~~epkVAlLSYST~gSgGd~g~~veKV~~A~~I~~Ek~pdL~~ 234 (322)
T TIGR00651 155 GTREVLVFADCAVNVDPNAEQLAEIAIQSAKSAKSFGEIEPKVALLSYSTKGSGGDSGEEVEKVREATRIAKEKRPDLKA 234 (322)
T ss_pred CCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 74412688512450298878999999999999998468996089983024556555413338999999998538713764
Q ss_pred EEECCCCHHHHCCHHHHHHCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCEEECHHHCCCCCCEEECCCCCCHHHH
Q ss_conf 99867304653298989630899877777777881891288899999998659868714431458987987876389889
Q gi|254780137|r 680 EVDAIVQEEVCLSEIFCDKDVPNTSSSQDAQLLVFPNIDSANIALEMAKSVTNGLHIGTLLLGAALPVHIVPSSVSVREI 759 (779)
Q Consensus 680 ~VDGemq~D~AL~~~ia~~K~p~S~laG~ANVLIfPnLeAaNI~yKllq~lgga~aiGPIL~G~~kPV~ilsr~~Sv~dI 759 (779)
.+|||||+|+|+.++++++|.|+|+++|+|||||||||+||||+||+.||++++.+|||||||++|||++|||||||+||
T Consensus 235 ~~dGELQ~DAA~v~~Va~~KaP~S~v~G~AnvfvFPdL~aGNigYK~vQR~~~~~AiGPiLQGl~kPvnDLSRGcsV~DI 314 (322)
T TIGR00651 235 TIDGELQFDAAVVEKVAEKKAPNSPVAGKANVFVFPDLDAGNIGYKIVQRLADAEAIGPILQGLSKPVNDLSRGCSVEDI 314 (322)
T ss_pred HCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCEEECCHHHHHCCCCCHHCCCCCHHHH
T ss_conf 05873011143238889640789865563558871687740578888876237723440675214765411035779999
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q gi|254780137|r 760 IDMVALVM 767 (779)
Q Consensus 760 vn~aAlA~ 767 (779)
+|..+|++
T Consensus 315 ~~~~~iTa 322 (322)
T TIGR00651 315 VNAIAITA 322 (322)
T ss_pred HHHHHHCC
T ss_conf 99898809
No 13
>PRK05805 phosphate butyryltransferase; Validated
Probab=100.00 E-value=0 Score=605.88 Aligned_cols=291 Identities=22% Similarity=0.276 Sum_probs=266.0
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHH
Q ss_conf 89999997215894699824774046799999985275089995598999999998498766546842306202556789
Q gi|254780137|r 445 MKKIFSIAKGTDSKRILFSAGEDERVLRATQILIKENIARPVLIGSLLTIQDNIRRHDLQIIATKDFDVIDLNNKQSLKD 524 (779)
Q Consensus 445 mr~i~~~AK~~~pKRIVfaEgeD~rVLrAA~~~~eeGia~PILVG~~e~I~~~~~~~gL~l~~~~dieIidp~~~~~~~~ 524 (779)
+..++++||+++|||||||||+|+|+|+||+++.++||++|||||++++|++.++++||++ .++||+|+.+..
T Consensus 5 ~~~i~~~ak~~~pkrIv~~eg~d~rvl~AA~~~~~~gia~pILiG~~~~I~~~~~~~gl~l---~~~eiid~~~~~---- 77 (301)
T PRK05805 5 FDEILSKAKEQGPKTISVAVAQDEPVLEAVKEAKELGIANAILVGDEEKIKEIAKEIGMDL---EDFEIIDEKDNK---- 77 (301)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCC---CCCEEECCCCHH----
T ss_conf 9999999862798969990899979999999999879979999859999999999879996---667773564629----
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHH-HCCCCCCCCCEEEEECCC
Q ss_conf 9999999876379998999999862535678999865721001004467774046777776-306876685012100135
Q gi|254780137|r 525 YVDSYRSLSAEKGISLDSIYDLLRSNTTLLGSLALKRGEGDGMICMCDSESGYNSHLTDIH-KIIGMGLGISHYSAMSMC 603 (779)
Q Consensus 525 ya~~l~~~~~RKG~~~~~A~~~vr~d~~~faa~MV~~G~AD~lI~G~~~t~~y~~~lr~~~-~vIG~~~g~~~vs~~~il 603 (779)
+..+++++||+.|+||+||+|.++|. ..+++++ +++|.++| ++++++++|
T Consensus 78 -------------------------~~~~~a~~lv~~G~aD~lv~G~~~t~---~~lr~~l~~~~g~~~g-~~~s~~~~~ 128 (301)
T PRK05805 78 -------------------------KAALKAVELVSSGKADMVMKGLVDTA---TFLRAVLNKEIGLRTG-KTMSHVAVF 128 (301)
T ss_pred -------------------------HHHHHHHHHHHCCCHHHHHCCCCCCH---HHHHHHHHHHCCCCCC-CCEEEEEEE
T ss_conf -------------------------99999999986787467863875543---8999985101477788-717899999
Q ss_pred C--CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCC-CCEEEEEECCCCCCCCCCHHHHHHHHHHHHH-HCCCC
Q ss_conf 5--777349997473688989889999999999999981899-7299997025578889778999999999987-37995
Q gi|254780137|r 604 I--VRDNFLFFTDTHVSAEPSAMEIADSTILASQAICSLGMR-PKVSVLFHSNSGSHCIKSSLKMRDSFEKICE-LSKNL 679 (779)
Q Consensus 604 ~--~~~~~lFiaDtaVNi~PtaEqLAdIa~~aa~~ar~lGie-PkVAlLS~SnfGs~~~~s~~kvr~A~eil~~-~~pd~ 679 (779)
. .+++++||+||+||++||+|||++|++++++++|+||+| |||||||||||||++++++.+++.+.++.++ +.||+
T Consensus 129 ~~~~~~~~l~~aD~~vn~~P~~e~la~Ia~~aa~~a~~lgie~PrVAlLS~s~~~s~~~~s~~da~~~~~~~~~~~~~~~ 208 (301)
T PRK05805 129 EVPKYDRLLFLTDAAFNIYPDLKEKIDIINNAVTVAHAIGIEVPKVAPICAVEVVNPKMPATLDAALLSKMSDRGQIKGC 208 (301)
T ss_pred EECCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 96289816999456200093999999999999999998289998599993004778887307999999999874138887
Q ss_pred EEECCCCHHHHCCHHHHHHCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCEEECHHHCCCCCCEEECCCCCCHHHH
Q ss_conf 99867304653298989630899877777777881891288899999998659868714431458987987876389889
Q gi|254780137|r 680 EVDAIVQEEVCLSEIFCDKDVPNTSSSQDAQLLVFPNIDSANIALEMAKSVTNGLHIGTLLLGAALPVHIVPSSVSVREI 759 (779)
Q Consensus 680 ~VDGemq~D~AL~~~ia~~K~p~S~laG~ANVLIfPnLeAaNI~yKllq~lgga~aiGPIL~G~~kPV~ilsr~~Sv~dI 759 (779)
+||||||+|+|++++++++|+|+|+|+|+|||||||||+||||+||++|+++|+.++| ||+|+++|||++|||||++||
T Consensus 209 ~vDGelq~D~Al~~e~~~~k~~~s~vaG~ANvLIfPnL~agNI~yKl~q~~~ga~~~G-il~G~~~Pv~~lSR~~s~~di 287 (301)
T PRK05805 209 IVDGPFALDNAISEEAAKHKGIDGPVAGKADILLVPNIEAGNVMYKTLTYFADCKNGG-LLVGTSAPVVLTSRADSHETK 287 (301)
T ss_pred EECCCCHHHHHHCHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCEEEE-EEECCCCCEEECCCCCCHHHH
T ss_conf 4567624777738999985189997688788898688578899999999966982885-653279888769998889999
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999996
Q gi|254780137|r 760 IDMVALVMASNNS 772 (779)
Q Consensus 760 vn~aAlA~~~A~~ 772 (779)
+|++|||+++||.
T Consensus 288 ~n~~aiaal~A~~ 300 (301)
T PRK05805 288 LNSIALAALVAAK 300 (301)
T ss_pred HHHHHHHHHHHHC
T ss_conf 9999999999735
No 14
>PRK11890 phosphate acetyltransferase; Provisional
Probab=100.00 E-value=0 Score=596.86 Aligned_cols=298 Identities=17% Similarity=0.210 Sum_probs=268.0
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHH
Q ss_conf 68899999972158946998247740467999999852750899955989999999984987665468423062025567
Q gi|254780137|r 443 SLMKKIFSIAKGTDSKRILFSAGEDERVLRATQILIKENIARPVLIGSLLTIQDNIRRHDLQIIATKDFDVIDLNNKQSL 522 (779)
Q Consensus 443 ~~mr~i~~~AK~~~pKRIVfaEgeD~rVLrAA~~~~eeGia~PILVG~~e~I~~~~~~~gL~l~~~~dieIidp~~~~~~ 522 (779)
.-+..++++|++..||||+|+++||++||+||+++.+|||++||||||+++|++.++++||++ .++||+|+++++..
T Consensus 8 ~~~~~li~~a~~~~pkrvava~aed~~vL~Aa~~a~~eGia~PILvG~~~~I~~~a~~~gldl---~~~eIid~~~~~~~ 84 (312)
T PRK11890 8 EKYERLIARARTLPPLPTAVVHPCDESSLRGAVEAAQLGLITPILVGPRARIRAVAEECGLDL---SDYQIVDAPHSHAA 84 (312)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCC---CCCEEECCCCCHHH
T ss_conf 999999999854899629998479979999999999869837999899999999999859997---88868789982899
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEECC
Q ss_conf 89999999987637999899999986253567899986572100100446777404677777630687668501210013
Q gi|254780137|r 523 KDYVDSYRSLSAEKGISLDSIYDLLRSNTTLLGSLALKRGEGDGMICMCDSESGYNSHLTDIHKIIGMGLGISHYSAMSM 602 (779)
Q Consensus 523 ~~ya~~l~~~~~RKG~~~~~A~~~vr~d~~~faa~MV~~G~AD~lI~G~~~t~~y~~~lr~~~~vIG~~~g~~~vs~~~i 602 (779)
.+ .+..||+.|+||+||+|.++|..+...+ +.+..|.+++ +++|++++
T Consensus 85 a~-----------------------------~av~lv~~g~Ad~lmkG~~~t~~~l~~v--l~~~~glr~~-~~vS~v~~ 132 (312)
T PRK11890 85 AA-----------------------------KAVELVRAGEAEALMKGSLHTDELMSAV--VARDTGLRTE-RRISHVFV 132 (312)
T ss_pred HH-----------------------------HHHHHHCCCCCCEEEECCCCCHHHHHHH--HHHCCCCCCC-CEEEEEEE
T ss_conf 99-----------------------------9999833788868986787625676665--4103676788-64789999
Q ss_pred CCCC--CCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCC-CCCEEEEEECCCCCCCCCCHHHHHHHHHHHHH-HCCC
Q ss_conf 5577--734999747368898988999999999999998189-97299997025578889778999999999987-3799
Q gi|254780137|r 603 CIVR--DNFLFFTDTHVSAEPSAMEIADSTILASQAICSLGM-RPKVSVLFHSNSGSHCIKSSLKMRDSFEKICE-LSKN 678 (779)
Q Consensus 603 l~~~--~~~lFiaDtaVNi~PtaEqLAdIa~~aa~~ar~lGi-ePkVAlLS~SnfGs~~~~s~~kvr~A~eil~~-~~pd 678 (779)
|..+ ++++|||||+||++||+|||++|++++++++|+||+ +|||||||||||||+++|++.+++.++++.++ +.++
T Consensus 133 m~~~~~~k~l~~tD~~vni~P~~eqla~Ia~~aa~~a~~~Gi~~PkVA~LS~se~~s~~~pst~da~~l~k~~~r~~~~~ 212 (312)
T PRK11890 133 MDVPTYPKPLIITDAAVNIAPTLEDKADIVQNAIDLAHALGEDEPRVAILSAVETVNPKIPSTLDAAALCKMADRGQITG 212 (312)
T ss_pred EEECCCCCEEEEECCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 97368883499942657758799999999999999999838998628999600367887610799999999876514888
Q ss_pred CEEECCCCHHHHCCHHHHHHCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCEEECHHHCCCCCCEEECCCCCCHHH
Q ss_conf 59986730465329898963089987777777788189128889999999865986871443145898798787638988
Q gi|254780137|r 679 LEVDAIVQEEVCLSEIFCDKDVPNTSSSQDAQLLVFPNIDSANIALEMAKSVTNGLHIGTLLLGAALPVHIVPSSVSVRE 758 (779)
Q Consensus 679 ~~VDGemq~D~AL~~~ia~~K~p~S~laG~ANVLIfPnLeAaNI~yKllq~lgga~aiGPIL~G~~kPV~ilsr~~Sv~d 758 (779)
|+||||||+|+|++++++++|+|+|+|+|+|||||||||+||||+||++|+|+|++++| ||+|+++|||++||+||+++
T Consensus 213 ~~vDGelq~D~Al~~~~a~~K~~~s~vaG~AnvLIfPnLeagNI~yK~l~~l~ga~a~G-il~G~~~PV~~~SR~~s~~~ 291 (312)
T PRK11890 213 AILDGPLAFDNAISPEAARIKGIVSPVAGDADILLVPDLEAGNMLAKQLTFLAGADAAG-IVLGARVPIILTSRADSVRT 291 (312)
T ss_pred CEECCCHHHHHHHCHHHHHHHCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCEEEE-EEECCCCCEEECCCCCCHHH
T ss_conf 74257318888738999997344786688798899188278789999999845983997-66506888787899888999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999969864
Q gi|254780137|r 759 IIDMVALVMASNNSNSSK 776 (779)
Q Consensus 759 Ivn~aAlA~~~A~~~~~~ 776 (779)
|+||+|||+++||.++..
T Consensus 292 ~vn~~Ala~v~Aq~~k~~ 309 (312)
T PRK11890 292 RLASCAVAALVANARRAA 309 (312)
T ss_pred HHHHHHHHHHHHHHHHHC
T ss_conf 999999999999874113
No 15
>PRK07742 phosphate butyryltransferase; Validated
Probab=100.00 E-value=0 Score=595.73 Aligned_cols=293 Identities=20% Similarity=0.280 Sum_probs=261.8
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHH
Q ss_conf 88999999721589469982477404679999998527508999559899999999849876654684230620255678
Q gi|254780137|r 444 LMKKIFSIAKGTDSKRILFSAGEDERVLRATQILIKENIARPVLIGSLLTIQDNIRRHDLQIIATKDFDVIDLNNKQSLK 523 (779)
Q Consensus 444 ~mr~i~~~AK~~~pKRIVfaEgeD~rVLrAA~~~~eeGia~PILVG~~e~I~~~~~~~gL~l~~~~dieIidp~~~~~~~ 523 (779)
.|+.++++||+.+||||+||||||+|||+|++.+.++||++|||||++++|++.+++++++. ..+++|+++++.+..
T Consensus 2 k~~~i~~~ak~~~~k~I~~aeged~rvL~Aa~~~~~egia~PILvG~~~~I~~~~~~~~l~~--~~~~~i~~~~~~~~~- 78 (299)
T PRK07742 2 KLEHLIDQAAGQPKKTVAVAVAEDEEVIEAVAKAIELQLARFRLYGNQEKIMGMLQEHSLQT--SEHIEIIHAQSSAEA- 78 (299)
T ss_pred CHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHCCCCC--CCCEEECCCCCHHHH-
T ss_conf 76999999853899869982899979999999999869968999819999999999869997--788277189997999-
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHH-HCCCCCCCCCEEEEECC
Q ss_conf 99999999876379998999999862535678999865721001004467774046777776-30687668501210013
Q gi|254780137|r 524 DYVDSYRSLSAEKGISLDSIYDLLRSNTTLLGSLALKRGEGDGMICMCDSESGYNSHLTDIH-KIIGMGLGISHYSAMSM 602 (779)
Q Consensus 524 ~ya~~l~~~~~RKG~~~~~A~~~vr~d~~~faa~MV~~G~AD~lI~G~~~t~~y~~~lr~~~-~vIG~~~g~~~vs~~~i 602 (779)
..++++||+.|+||+||+|.+.|. ..++.++ +..|.+++ +.+|++++
T Consensus 79 ----------------------------~~~a~~~v~~g~aD~lv~G~~~t~---~~l~~~l~~~~gl~~~-~~~s~v~~ 126 (299)
T PRK07742 79 ----------------------------AELAVKAVRNGEADVLMKGNVPTA---NILKAVLNKEWGLRKG-SVLSHVAA 126 (299)
T ss_pred ----------------------------HHHHHHHHHCCCCCEEECCCCCCC---CCHHHHHCCCCCCCCC-CEEEEEEE
T ss_conf ----------------------------999999975797859924776752---1106343513587788-85899999
Q ss_pred --CCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCC-CCEEEEEECCCCCCCCCCHHHHHHHHHHHHH-HCCC
Q ss_conf --55777349997473688989889999999999999981899-7299997025578889778999999999987-3799
Q gi|254780137|r 603 --CIVRDNFLFFTDTHVSAEPSAMEIADSTILASQAICSLGMR-PKVSVLFHSNSGSHCIKSSLKMRDSFEKICE-LSKN 678 (779)
Q Consensus 603 --l~~~~~~lFiaDtaVNi~PtaEqLAdIa~~aa~~ar~lGie-PkVAlLS~SnfGs~~~~s~~kvr~A~eil~~-~~pd 678 (779)
++.+++++|||||+||++||+|||++|++++++++|+||+| |||||||||+++++.++++.+...+.++.++ +.||
T Consensus 127 ~~~p~~~~~l~~~D~aVni~P~~eqla~Ia~~aa~~a~~~gie~PkVAmLS~~~~~~~~~~~~~~a~~~~~~~~r~~~~d 206 (299)
T PRK07742 127 FEVPNYDRLIFVTDAAMNIAPDLTQKAAIIQNAVEVARAIGIDLPKVAPLAAVEVVNPAMQATIDAAALTQMNRRGQIKN 206 (299)
T ss_pred EEECCCCCEEEEECCEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 98417883599830557528899999999999999999847998702035321357988731799999999987743667
Q ss_pred CEEECCCCHHHHCCHHHHHHCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCEEECHHHCCCCCCEEECCCCCCHHH
Q ss_conf 59986730465329898963089987777777788189128889999999865986871443145898798787638988
Q gi|254780137|r 679 LEVDAIVQEEVCLSEIFCDKDVPNTSSSQDAQLLVFPNIDSANIALEMAKSVTNGLHIGTLLLGAALPVHIVPSSVSVRE 758 (779)
Q Consensus 679 ~~VDGemq~D~AL~~~ia~~K~p~S~laG~ANVLIfPnLeAaNI~yKllq~lgga~aiGPIL~G~~kPV~ilsr~~Sv~d 758 (779)
|+||||||+|+|+|++++++|+|+|+|+|+||||||||||||||+||++|+++|+. +||||+|+++|||++|||||+++
T Consensus 207 ~~vDGelq~D~Al~~~~~~~k~~~s~v~G~ANvLIfPnL~agNI~yK~l~~~~ga~-iGpiL~G~~~Pv~~lSR~~s~~~ 285 (299)
T PRK07742 207 CVVDGPLALDNAVSQIAAEHKGIVSDVAGKADILLVPTIEAGNVLYKSLVYFADAK-VGAMIAGAKAPIVLTSRADSAET 285 (299)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCC-EECEEECCCCCEEECCCCCCHHH
T ss_conf 61467427777636999975289997788787899078278789999999846995-40457527888686899988899
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999999996
Q gi|254780137|r 759 IIDMVALVMASNNS 772 (779)
Q Consensus 759 Ivn~aAlA~~~A~~ 772 (779)
|+||+|||+++||.
T Consensus 286 ivn~~Alav~~Aq~ 299 (299)
T PRK07742 286 KLYSLALAICTASK 299 (299)
T ss_pred HHHHHHHHHHHHCC
T ss_conf 99999999998567
No 16
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=100.00 E-value=0 Score=552.32 Aligned_cols=246 Identities=34% Similarity=0.495 Sum_probs=216.8
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHCEEEEECCCHHHHHHHHHHHHC----CC----CCCCEEEEECCCEEECCCCCCCC
Q ss_conf 72189999999999999709882241178742542567899999981----98----85758999559603078733266
Q gi|254780137|r 178 QHGTAVTVTAATLNGMKLVGKKFSDIKIVTLGAGAAALACLNLLVTM----GV----RRENIWVYDLEGLVYEGREKKFD 249 (779)
Q Consensus 178 ~qGTa~v~lA~llnAl~~~gk~l~~~~iv~~GaGaAg~~~a~ll~~~----g~----~~~~i~~~D~~Gli~~~r~~~~~ 249 (779)
|||||+|+|||||||+|++||+|+|+||||+|||+||+||++++..+ |+ .++|||+|||+||||++|+ +++
T Consensus 1 IQGTa~V~lA~linA~k~~gk~l~d~riv~~GAGsAg~gia~~l~~~~~~~G~~~eeA~~~i~~~D~~Gli~~~r~-dl~ 79 (279)
T cd05312 1 IQGTAAVALAGLLAALRITGKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRK-DLT 79 (279)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCHHHCEEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHCEEEEECCCCEEECCCC-CCH
T ss_conf 9478999999999999983998767379997975899999999999999859997886170999658875317999-864
Q ss_pred HHHHHHHHCCC---CCCHHHHCCCC--CEEEECCC-CCCCCHHHHHHC---CCCCEEEEECCCCC--CCCHHHHH-HHCC
Q ss_conf 78897745088---98888860588--37862578-877898899721---89977999178720--09988998-5189
Q gi|254780137|r 250 KWKSVYAQKSG---PKPLSETMNNA--DVFLGLSV-AGALDPAILKFM---AEKPLIMVLANPNP--EAMPDEIK-KVRP 317 (779)
Q Consensus 250 ~~~~~~a~~~~---~~~l~ea~~~a--dv~iG~S~-~g~~t~e~v~~M---~~~PiIfaLsNP~p--Ei~p~~a~-~~~g 317 (779)
++|++|++..+ .++|.|+++++ |||||+|+ +|+||+|||++| |++||||||||||| ||+||+++ |++|
T Consensus 80 ~~k~~~a~~~~~~~~~~L~e~v~~~kp~vlIG~S~~~g~ft~e~v~~Ma~~~e~PIIFaLSNPt~~~E~~peda~~~t~G 159 (279)
T cd05312 80 PFKKPFARKDEEKEGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALSNPTSKAECTAEDAYKWTDG 159 (279)
T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHCCC
T ss_conf 99999987474568999999997248977998068989779999999984599977996379976678899999862269
Q ss_pred CEEECCC----------CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCC
Q ss_conf 8798058----------878877435034556654567513730026789999999999872033136677413876766
Q gi|254780137|r 318 DAMICTG----------RSDFSNQVNNVLCFPYIFRGALDCGATAITEEMKVAAARAMAVLVRDVPPDVVFDNFAKESPV 387 (779)
Q Consensus 318 ~aivatG----------rs~~pnQ~NN~l~FPgif~Gal~~~A~~Itd~M~~aAa~alA~la~~~~~~~~~~~~~~~~~~ 387 (779)
++||||| |||+|||+||+|+|||||||+|++||++|||+|++|||++||+++.++.
T Consensus 160 ~aivATGSpf~~v~~~Grs~~pnQ~NN~l~FPGi~~Gal~~~A~~Itd~M~~aAA~alA~~v~~~~-------------- 225 (279)
T cd05312 160 RALFASGSPFPPVEYNGKTYVPGQGNNAYIFPGIGLGAILSGARHITDEMFLAAAEALASLVTDEE-------------- 225 (279)
T ss_pred CEEEEECCCCCCCCCCCEEEECCCCCEEEECCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHH--------------
T ss_conf 889983898776204895870798630213113678899806887899999999999986377632--------------
Q ss_pred CCCCCCCCCCCCHH-HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 67522366654677-86798888999874213223543225899999998620
Q gi|254780137|r 388 FGPNYLIPSPFDPN-LISYIAPAVAKAAEEAGVASSPIEDYEVYRDSLKRFSF 439 (779)
Q Consensus 388 ~g~~yiiP~~fd~r-~~~~va~AVa~aA~~sGvAr~pi~d~~~Y~~~L~~rl~ 439 (779)
+..+||+|.+||.| +..+||.||+++|+++||||++.+ .+.+++..+++++
T Consensus 226 l~~~~i~P~~~~~r~vs~~VA~aVa~~A~~~GvA~~~~~-~~d~~~~i~~~mw 277 (279)
T cd05312 226 LARGRLYPPLSNIREISAQIAVAVAKYAYEEGLATRYPP-PEDLEEYVKSQMW 277 (279)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC-HHHHHHHHHHCCC
T ss_conf 688873799723757479999999999998599888998-7899999997078
No 17
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=100.00 E-value=0 Score=541.35 Aligned_cols=222 Identities=51% Similarity=0.787 Sum_probs=211.2
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHH
Q ss_conf 72189999999999999709882241178742542567899999981988575899955960307873326678897745
Q gi|254780137|r 178 QHGTAVTVTAATLNGMKLVGKKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQ 257 (779)
Q Consensus 178 ~qGTa~v~lA~llnAl~~~gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~ 257 (779)
|||||+|+|||||||+|++|++|+|+||||+|||+||+||++|++++|++++|||++|++||||++|.+.++++|.+|++
T Consensus 1 QQGTaaV~LAgll~a~r~~g~~l~d~riv~~GAGsAg~gia~ll~~~g~~~~~i~lvD~~GLl~~~r~d~~~~~k~~~a~ 80 (226)
T cd05311 1 QHGTAIVTLAGLLNALKLVGKKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAK 80 (226)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHH
T ss_conf 96489999999999999849981030799987689999999999982776026799936785247886414499999998
Q ss_pred CCCC----CCHHHHCCCCCEEEECCCCCCCCHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHCCCEEECCCCCCCCCCCC
Q ss_conf 0889----888886058837862578877898899721899779991787200998899851898798058878877435
Q gi|254780137|r 258 KSGP----KPLSETMNNADVFLGLSVAGALDPAILKFMAEKPLIMVLANPNPEAMPDEIKKVRPDAMICTGRSDFSNQVN 333 (779)
Q Consensus 258 ~~~~----~~l~ea~~~adv~iG~S~~g~~t~e~v~~M~~~PiIfaLsNP~pEi~p~~a~~~~g~aivatGrs~~pnQ~N 333 (779)
..+. .+|.|+++++|||||+|++|+||+|+|++|+++|||||||||||||+|+++++ .|+++||||||+||||+|
T Consensus 81 ~~~~~~~~~~l~e~v~~~~vLIG~S~~g~Ft~evv~~M~~~PiIFaLSNPt~E~tpe~a~~-~G~ai~AtG~s~~P~Q~N 159 (226)
T cd05311 81 ETNPEKTGGTLKEALKGADVFIGVSRPGVVKKEMIKKMAKDPIVFALANPVPEIWPEEAKE-AGADIVATGRSDFPNQVN 159 (226)
T ss_pred HHCCCCCCCCHHHHHCCCCEEEECCCCCCCCHHHHHHHCCCCEEEECCCCCCCCCHHHHHH-HCCCEEECCCCCCCCCCC
T ss_conf 7233566687999837775799726899779999997477988987889976489999987-277089549979987776
Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 03455665456751373002678999999999987203313667741387676667522366654677867988889998
Q gi|254780137|r 334 NVLCFPYIFRGALDCGATAITEEMKVAAARAMAVLVRDVPPDVVFDNFAKESPVFGPNYLIPSPFDPNLISYIAPAVAKA 413 (779)
Q Consensus 334 N~l~FPgif~Gal~~~A~~Itd~M~~aAa~alA~la~~~~~~~~~~~~~~~~~~~g~~yiiP~~fd~r~~~~va~AVa~a 413 (779)
|+|+|||||+|++++||++|||+|+++||++||+++.++.+ ++++|+|+.+|+||..+||.||+++
T Consensus 160 N~~iFPGiglG~~~~~a~~itd~m~~aAA~aLA~~v~~~~~--------------~~g~l~P~~~~~~vs~~VA~aVa~~ 225 (226)
T cd05311 160 NVLGFPGIFRGALDVRATKITEEMKLAAAEAIADLAEEEVL--------------GEEYIIPTPFDPRVVPRVATAVAKA 225 (226)
T ss_pred CEEECCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCC--------------CCCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 25776416577998167668999999999999852881358--------------9886889988656899999999960
Q ss_pred H
Q ss_conf 7
Q gi|254780137|r 414 A 414 (779)
Q Consensus 414 A 414 (779)
|
T Consensus 226 A 226 (226)
T cd05311 226 A 226 (226)
T ss_pred C
T ss_conf 9
No 18
>pfam03949 Malic_M Malic enzyme, NAD binding domain.
Probab=100.00 E-value=0 Score=524.85 Aligned_cols=223 Identities=47% Similarity=0.686 Sum_probs=206.4
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHCEEEEECCCHHHHHHHHHHHHCCC----C----CCCEEEEECCCEEECCCCCCCC
Q ss_conf 7218999999999999970988224117874254256789999998198----8----5758999559603078733266
Q gi|254780137|r 178 QHGTAVTVTAATLNGMKLVGKKFSDIKIVTLGAGAAALACLNLLVTMGV----R----RENIWVYDLEGLVYEGREKKFD 249 (779)
Q Consensus 178 ~qGTa~v~lA~llnAl~~~gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~----~----~~~i~~~D~~Gli~~~r~~~~~ 249 (779)
|||||+|+||||+||+|++||+|+|+||||+|||+||+||++|+..+++ . ++|||+||++|||+++|+ .++
T Consensus 1 IqGTa~V~lAgll~alk~~g~~l~d~riv~~GAGsAg~gia~~l~~~~~~~G~~~~eA~~~i~~~D~~Gll~~~r~-~l~ 79 (255)
T pfam03949 1 IQGTAAVVLAGLLNALKITGKPLSDQKIVFFGAGAAGIGIAELLVAAMVREGLSEEEARKNIWMVDRKGLLTEGRE-DLN 79 (255)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCHHHCEEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHCCEEEECCCCEEECCCC-CCH
T ss_conf 9489999999999999982998778289997978899999999999998769997887365899759774558998-855
Q ss_pred HHHHHHHHCCCC----CCHHHHCCCC--CEEEECCC-CCCCCHHHHHHCCC---CCEEEEECCCCC--CCCHHHHH-HHC
Q ss_conf 788977450889----8888860588--37862578-87789889972189---977999178720--09988998-518
Q gi|254780137|r 250 KWKSVYAQKSGP----KPLSETMNNA--DVFLGLSV-AGALDPAILKFMAE---KPLIMVLANPNP--EAMPDEIK-KVR 316 (779)
Q Consensus 250 ~~~~~~a~~~~~----~~l~ea~~~a--dv~iG~S~-~g~~t~e~v~~M~~---~PiIfaLsNP~p--Ei~p~~a~-~~~ 316 (779)
++|++|++.++. .+|.|+++++ |||||+|+ +|+||+|+|+.|++ +||||||||||| ||+||+++ |+.
T Consensus 80 ~~k~~~a~~~~~~~~~~~L~e~v~~~kP~vlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~~peda~~~t~ 159 (255)
T pfam03949 80 PFKKPFARKTNEVKGWGTLAEAVKGAKPDVLIGVSGVPGVFTEEIVRAMAEHTERPIIFALSNPTPKAEITPEEAYKWTA 159 (255)
T ss_pred HHHHHHHHHCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHCC
T ss_conf 99999975376555669999998626887799816888988999999998169998487668989877779899998549
Q ss_pred CCEEECCC----------CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCC
Q ss_conf 98798058----------87887743503455665456751373002678999999999987203313667741387676
Q gi|254780137|r 317 PDAMICTG----------RSDFSNQVNNVLCFPYIFRGALDCGATAITEEMKVAAARAMAVLVRDVPPDVVFDNFAKESP 386 (779)
Q Consensus 317 g~aivatG----------rs~~pnQ~NN~l~FPgif~Gal~~~A~~Itd~M~~aAa~alA~la~~~~~~~~~~~~~~~~~ 386 (779)
|++||||| ||++|||+||+|+|||||||+|++||++|||+|++|||++||+++.++.
T Consensus 160 G~ai~ATGSpf~pv~~~Gr~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~aLA~~v~~~~------------- 226 (255)
T pfam03949 160 GRALFATGSPFPPVELNGRSDYPNQVNNVLIFPGIGLGALDVRARRITDEMFLAAAEALAELVTEEE------------- 226 (255)
T ss_pred CEEEEEECCCCCCEEECCEEECCCCCCCEEECCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCC-------------
T ss_conf 9289985898776000885861577620103532567889717877899999999999985078112-------------
Q ss_pred CCCCCCCCCCCCCHH-HHHHHHHHHHHHHH
Q ss_conf 667522366654677-86798888999874
Q gi|254780137|r 387 VFGPNYLIPSPFDPN-LISYIAPAVAKAAE 415 (779)
Q Consensus 387 ~~g~~yiiP~~fd~r-~~~~va~AVa~aA~ 415 (779)
++++||+|.+||.| +..+||.||+++|+
T Consensus 227 -l~~~~i~P~~~~~r~vs~~VA~aV~~~Ai 255 (255)
T pfam03949 227 -LGEGYIIPPLFDIREVSPRVAVAVAKAAV 255 (255)
T ss_pred -CCCCCCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf -88874649987487879999999999649
No 19
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=100.00 E-value=0 Score=509.59 Aligned_cols=222 Identities=32% Similarity=0.476 Sum_probs=200.0
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHCEEEEECCCHHHHHHHHHHHHCCCC--------CCCEEEEECCCEEECCCCCCCC
Q ss_conf 72189999999999999709882241178742542567899999981988--------5758999559603078733266
Q gi|254780137|r 178 QHGTAVTVTAATLNGMKLVGKKFSDIKIVTLGAGAAALACLNLLVTMGVR--------RENIWVYDLEGLVYEGREKKFD 249 (779)
Q Consensus 178 ~qGTa~v~lA~llnAl~~~gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~--------~~~i~~~D~~Gli~~~r~~~~~ 249 (779)
|||||+|+|||||||+|++||+|+||||||+|||+||+||++|+..++++ ++|||+|||+|||+++|++ ++
T Consensus 1 IqGTaaV~LAgli~Alk~~gk~l~d~riv~~GAGsAg~gia~~l~~~~~~~Gl~~~ea~~~i~lvD~~GLl~~~r~~-~~ 79 (254)
T cd00762 1 IQGTASVAVAGLLAALKVTKKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKE-TC 79 (254)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCHHHCEEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHCCEEEECCCCCEECCCCC-CC
T ss_conf 94889999999999999839987785899988329999999999998643265324332107885377732579754-58
Q ss_pred HHHHHHHHCC----CCCCHHHHCC--CCCEEEECCC-CCCCCHHHHHHCC---CCCEEEEECCCCC--CCCHHHHH-HHC
Q ss_conf 7889774508----8988888605--8837862578-8778988997218---9977999178720--09988998-518
Q gi|254780137|r 250 KWKSVYAQKS----GPKPLSETMN--NADVFLGLSV-AGALDPAILKFMA---EKPLIMVLANPNP--EAMPDEIK-KVR 316 (779)
Q Consensus 250 ~~~~~~a~~~----~~~~l~ea~~--~adv~iG~S~-~g~~t~e~v~~M~---~~PiIfaLsNP~p--Ei~p~~a~-~~~ 316 (779)
+++.++++.. ...+|.|+++ ++|||||+|+ +|+||+|+|+.|+ ++||||||||||| ||+|++++ |++
T Consensus 80 ~~~~~~~~~~~~~~~~~~L~e~v~~~kptvLIG~S~~~g~Fteevv~~Ma~~~~~PIIFaLSNPt~~aE~~peda~~~t~ 159 (254)
T cd00762 80 PNEYHLARFANPERESGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFALSNPTSKAECTAEEAYTATE 159 (254)
T ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHCC
T ss_conf 88899998647677679999999863998899958998988999999776338898899778999867799999997518
Q ss_pred CCEEECCCCCCCCC----------CCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCC
Q ss_conf 98798058878877----------43503455665456751373002678999999999987203313667741387676
Q gi|254780137|r 317 PDAMICTGRSDFSN----------QVNNVLCFPYIFRGALDCGATAITEEMKVAAARAMAVLVRDVPPDVVFDNFAKESP 386 (779)
Q Consensus 317 g~aivatGrs~~pn----------Q~NN~l~FPgif~Gal~~~A~~Itd~M~~aAa~alA~la~~~~~~~~~~~~~~~~~ 386 (779)
|++||||||||+|| |+||+|+|||||||+|++||++|||+|++|||++||+++.++.
T Consensus 160 G~ai~AtGspf~pv~~~g~~~~~~Q~NN~~iFPGiglG~l~~~a~~itd~M~~aAA~aLA~~v~~~~------------- 226 (254)
T cd00762 160 GRAIFASGSPFHPVELNGGTYKPGQGNNLYIFPGVALGVILCRIRHITDDVFLSAAEAIASSVTEES------------- 226 (254)
T ss_pred CCEEEEECCCCCCEEECCEEEEECCCCEEEECHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHH-------------
T ss_conf 9789997897788158884885056413788503546688708767999999999999985288411-------------
Q ss_pred CCCCCCCCCCCCCHH-HHHHHHHHHHHHH
Q ss_conf 667522366654677-8679888899987
Q gi|254780137|r 387 VFGPNYLIPSPFDPN-LISYIAPAVAKAA 414 (779)
Q Consensus 387 ~~g~~yiiP~~fd~r-~~~~va~AVa~aA 414 (779)
+.+++|+|.+||.| +..+||.||+++|
T Consensus 227 -l~~~~l~P~~~~ir~vs~~VA~aVa~~A 254 (254)
T cd00762 227 -LKPGRLYPPLFDIQEVSLNIAVAVAKYA 254 (254)
T ss_pred -CCCCCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf -7888563998636463799999999509
No 20
>TIGR02706 P_butyryltrans phosphate butyryltransferase; InterPro: IPR014079 Members of this family are phosphate butyryltransferase enzymes, also called phosphotransbutyrylase. In general, this enzyme is found in butyrate-producing anaerobic bacteria, encoded next to the gene for butyrate kinase. Together, these two enzymes represent what may be the less common of two pathways for butyrate production from butyryl-CoA. The alternative is transfer of the CoA group to acetate by butyryl-CoA:acetate CoA transferase. This entry does not include the homologue from Thermotoga maritima, whose activity on butyryl-CoA is only 30 0f its activity with acetyl-CoA..
Probab=100.00 E-value=0 Score=464.30 Aligned_cols=288 Identities=19% Similarity=0.286 Sum_probs=257.6
Q ss_pred HHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHH
Q ss_conf 99999972158946998247740467999999852750899955989999999984987665468423062025567899
Q gi|254780137|r 446 KKIFSIAKGTDSKRILFSAGEDERVLRATQILIKENIARPVLIGSLLTIQDNIRRHDLQIIATKDFDVIDLNNKQSLKDY 525 (779)
Q Consensus 446 r~i~~~AK~~~pKRIVfaEgeD~rVLrAA~~~~eeGia~PILVG~~e~I~~~~~~~gL~l~~~~dieIidp~~~~~~~~y 525 (779)
..+++++++.++|+|.+|.++||.||+|++.+.|.||++.||+||+++|+++++++|.++ .||||||..+..
T Consensus 2 ~eL~~k~~~~~~K~vAVA~A~DE~VlEAvk~A~E~~ia~aiLvGD~~~I~~ia~~~~~~l---~d~eIv~~~~~~----- 73 (295)
T TIGR02706 2 EELIEKVKECPKKTVAVAVAQDEPVLEAVKEAKEKGIARAILVGDKEKIEEIAKKIGMNL---DDYEIVNAPSVK----- 73 (295)
T ss_pred HHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCC---CCEEEECCCCHH-----
T ss_conf 567889984789729998508924799999986559067888478899999999848982---301322289868-----
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHCCCCCCC--CCEEEEECCC
Q ss_conf 99999987637999899999986253567899986572100100446777404677777630687668--5012100135
Q gi|254780137|r 526 VDSYRSLSAEKGISLDSIYDLLRSNTTLLGSLALKRGEGDGMICMCDSESGYNSHLTDIHKIIGMGLG--ISHYSAMSMC 603 (779)
Q Consensus 526 a~~l~~~~~RKG~~~~~A~~~vr~d~~~faa~MV~~G~AD~lI~G~~~t~~y~~~lr~~~~vIG~~~g--~~~vs~~~il 603 (779)
+.|++.|| +|+.|+||.+|+|.+.|..|.+.+. .+-+|+|.| ++|+ ++|-.
T Consensus 74 ---------------~AA~~AV~---------lVs~~~AD~lMKG~V~Ta~~LrsVL--nKE~GLRTGk~lSHV-AVFe~ 126 (295)
T TIGR02706 74 ---------------KAALLAVR---------LVSTGKADMLMKGLVDTATFLRSVL--NKEVGLRTGKVLSHV-AVFEV 126 (295)
T ss_pred ---------------HHHHHHHH---------HHHCCCCCEEECCCCCHHHHHHHHH--HHHCCCCCCCCCCCE-EEECC
T ss_conf ---------------99999999---------8628986467448655578988885--000121048712206-77158
Q ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCC-CCEEEEEECCCCCCCCCCHHHHHHHHHHHHH--HCCCCE
Q ss_conf 5777349997473688989889999999999999981899-7299997025578889778999999999987--379959
Q gi|254780137|r 604 IVRDNFLFFTDTHVSAEPSAMEIADSTILASQAICSLGMR-PKVSVLFHSNSGSHCIKSSLKMRDSFEKICE--LSKNLE 680 (779)
Q Consensus 604 ~~~~~~lFiaDtaVNi~PtaEqLAdIa~~aa~~ar~lGie-PkVAlLS~SnfGs~~~~s~~kvr~A~eil~~--~~pd~~ 680 (779)
+-.+|++|+||.++|++|++||+.+|+.||+++||..||+ ||||.|.+.|..||+||+|.......+ +.+ |-.+|+
T Consensus 127 P~~dRLl~lTDaAfN~yP~Lk~K~~ii~NaV~VAha~Gi~~PkVA~l~AVEvVNP~M~aTvDAA~Lak-M~~RGQIkGCi 205 (295)
T TIGR02706 127 PGFDRLLFLTDAAFNIYPELKDKVQIINNAVKVAHAIGIEVPKVAVLAAVEVVNPKMPATVDAAALAK-MSDRGQIKGCI 205 (295)
T ss_pred CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCEEEECCCCHHHHHHHHHHH-HCCCCCEEEEE
T ss_conf 98551432312665028787899999764755023217886861153026356688715799999840-02068456788
Q ss_pred EECCCCHHHHCCHHHHHHCCCCC-CCCCCCCEEECCCHHHHHHHHHHHHHHCCCEEECHHHCCCCCCEEECCCCCCHHHH
Q ss_conf 98673046532989896308998-77777777881891288899999998659868714431458987987876389889
Q gi|254780137|r 681 VDAIVQEEVCLSEIFCDKDVPNT-SSSQDAQLLVFPNIDSANIALEMAKSVTNGLHIGTLLLGAALPVHIVPSSVSVREI 759 (779)
Q Consensus 681 VDGemq~D~AL~~~ia~~K~p~S-~laG~ANVLIfPnLeAaNI~yKllq~lgga~aiGPIL~G~~kPV~ilsr~~Sv~dI 759 (779)
|||||.+|+|+|++.+++|+..+ +|+|+||||+|||||+|||.||.|.|++.++.-| ||+|++.||.++||+||.+..
T Consensus 206 vDGPLALDnA~S~eAA~HKgi~~r~VAG~ADILL~P~IeaGN~lYK~LtY~a~~k~gg-~l~GtkaPvvLTSRADS~E~K 284 (295)
T TIGR02706 206 VDGPLALDNAISEEAAKHKGIEGREVAGKADILLVPDIEAGNVLYKTLTYFAKSKNGG-ILVGTKAPVVLTSRADSFETK 284 (295)
T ss_pred ECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHCCCE-EECCCCCCEEECCCCCHHHHH
T ss_conf 7473444577318999708856773267885421287202566999999997111145-860377873633555304468
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999999
Q gi|254780137|r 760 IDMVALVMASN 770 (779)
Q Consensus 760 vn~aAlA~~~A 770 (779)
+|++|||++.|
T Consensus 285 ~~SIALAa~va 295 (295)
T TIGR02706 285 LNSIALAALVA 295 (295)
T ss_pred HHHHHHHHHHC
T ss_conf 99999999829
No 21
>PRK08190 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; Validated
Probab=100.00 E-value=0 Score=432.41 Aligned_cols=301 Identities=17% Similarity=0.193 Sum_probs=266.4
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHH
Q ss_conf 68899999972158946998247740467999999852750899955989999999984987665468423062025567
Q gi|254780137|r 443 SLMKKIFSIAKGTDSKRILFSAGEDERVLRATQILIKENIARPVLIGSLLTIQDNIRRHDLQIIATKDFDVIDLNNKQSL 522 (779)
Q Consensus 443 ~~mr~i~~~AK~~~pKRIVfaEgeD~rVLrAA~~~~eeGia~PILVG~~e~I~~~~~~~gL~l~~~~dieIidp~~~~~~ 522 (779)
.-...++++++...|-+.++....|+..|+++.++.++|+++|||||++++|++.+++.|+++ .+|+|+|..++..
T Consensus 162 ~~~~~l~~~~~~~~p~~~avv~p~~~~~l~~a~~a~~~gli~PiLVG~~~kI~~~A~~~~~dl---~~~~ivd~~~~~~- 237 (465)
T PRK08190 162 DRYERLIAAARGLPPLRTAVVHPCDADALRGAIEAAEAGLIVPVLVGPEAKIRAAAEEAGVDL---SGVRIVAVEHSHA- 237 (465)
T ss_pred HHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCC---CCCEEECCCCCHH-
T ss_conf 669999997245999744898769877899999998779915899799999999999859982---2688870799489-
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEECC
Q ss_conf 89999999987637999899999986253567899986572100100446777404677777630687668501210013
Q gi|254780137|r 523 KDYVDSYRSLSAEKGISLDSIYDLLRSNTTLLGSLALKRGEGDGMICMCDSESGYNSHLTDIHKIIGMGLGISHYSAMSM 602 (779)
Q Consensus 523 ~~ya~~l~~~~~RKG~~~~~A~~~vr~d~~~faa~MV~~G~AD~lI~G~~~t~~y~~~lr~~~~vIG~~~g~~~vs~~~i 602 (779)
.|.+ |..|++.|+||.+|+|.++|..+++.+......+.+...+++++. +-
T Consensus 238 -------------------AA~~---------Av~lv~~G~a~~lMKG~l~T~~ll~avl~ke~GLrt~r~lSHv~~-~~ 288 (465)
T PRK08190 238 -------------------AAAR---------AVALARAGEVEALMKGSLHTDELLSAVVARDSGLRTERRISHVYA-MD 288 (465)
T ss_pred -------------------HHHH---------HHHHHHCCCCCEEECCCCCHHHHHHHHHCCCCCCCCCCEEEEEEE-EE
T ss_conf -------------------9999---------999986796658962886668888987424369878986899999-94
Q ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCC-CCEEEEEECCCCCCCCCCHHHHHHHHHHHHH-HCCCCE
Q ss_conf 55777349997473688989889999999999999981899-7299997025578889778999999999987-379959
Q gi|254780137|r 603 CIVRDNFLFFTDTHVSAEPSAMEIADSTILASQAICSLGMR-PKVSVLFHSNSGSHCIKSSLKMRDSFEKICE-LSKNLE 680 (779)
Q Consensus 603 l~~~~~~lFiaDtaVNi~PtaEqLAdIa~~aa~~ar~lGie-PkVAlLS~SnfGs~~~~s~~kvr~A~eil~~-~~pd~~ 680 (779)
++.++|++|+||+++|+.||.+|+++|++|+++++|.||++ ||||+||+++..++++|++.......++.++ +..+++
T Consensus 289 vP~y~k~l~iTDaaini~P~l~~K~~Ii~Nai~~a~~lG~~~PKVAiLsAvE~vnp~mpsTlDAa~L~kma~rGqi~g~i 368 (465)
T PRK08190 289 VPTYPRPLLITDAAINIAPTLEQKRDIVQNAIDLAHALGVEEPKVAILSAVETVNPKIPSTLDAAALCKMADRGQITGGI 368 (465)
T ss_pred CCCCCCEEEECCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCE
T ss_conf 48998349972540334889899999999999999981999982999960014488896458899999999748968848
Q ss_pred EECCCCHHHHCCHHHHHHCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCEEECHHHCCCCCCEEECCCCCCHHHHH
Q ss_conf 98673046532989896308998777777778818912888999999986598687144314589879878763898899
Q gi|254780137|r 681 VDAIVQEEVCLSEIFCDKDVPNTSSSQDAQLLVFPNIDSANIALEMAKSVTNGLHIGTLLLGAALPVHIVPSSVSVREII 760 (779)
Q Consensus 681 VDGemq~D~AL~~~ia~~K~p~S~laG~ANVLIfPnLeAaNI~yKllq~lgga~aiGPIL~G~~kPV~ilsr~~Sv~dIv 760 (779)
|||||.+|+|+|++.+++|++.|+|+|+||+|++|||||||++||.|.+|+|+++.| |++|++.||.++||++|.+..+
T Consensus 369 vdGPLa~DnAis~eAA~~Kgi~s~VAG~ADiLlvPdieaGN~l~K~l~~~a~a~~AG-iv~GakvPIvLtSRaDs~~~kl 447 (465)
T PRK08190 369 VDGPLAFDNAISAEAAKTKGIVSPVAGQADILVVPDLEAGNMLAKQLTYLAGADAAG-IVLGARVPIILTSRADSLRARL 447 (465)
T ss_pred EECCCHHHHHCCHHHHHHCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCEEE-EEECCCCCEEECCCCCCHHHHH
T ss_conf 877842775379989964699998788788898087477639999999857987788-8983678789727899788899
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 99999999999698641
Q gi|254780137|r 761 DMVALVMASNNSNSSKE 777 (779)
Q Consensus 761 n~aAlA~~~A~~~~~~~ 777 (779)
++.|+|++.|+.++...
T Consensus 448 ~S~AlA~l~a~~~~~~~ 464 (465)
T PRK08190 448 ASCALALLVAHARRAGP 464 (465)
T ss_pred HHHHHHHHHHHHHHHCC
T ss_conf 99999999999874089
No 22
>TIGR03270 methan_mark_4 putative methanogen marker protein 4. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely linked to it. Some members have been suggested to be a methyltransferase, based on the proximity of its gene to genes of the multi-subunit complex, N5-methyl-tetrahydromethanopterin--coenzyme M methyltransferase. That context is not conserved, however. The family shows similarity to various phosphate acyltranferases.
Probab=99.97 E-value=1.3e-31 Score=237.15 Aligned_cols=186 Identities=16% Similarity=0.135 Sum_probs=156.5
Q ss_pred HHHCCCCCEEECCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCC-CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 98657210010044677740467777763068766850121001355-77734999747368898988999999999999
Q gi|254780137|r 558 ALKRGEGDGMICMCDSESGYNSHLTDIHKIIGMGLGISHYSAMSMCI-VRDNFLFFTDTHVSAEPSAMEIADSTILASQA 636 (779)
Q Consensus 558 MV~~G~AD~lI~G~~~t~~y~~~lr~~~~vIG~~~g~~~vs~~~il~-~~~~~lFiaDtaVNi~PtaEqLAdIa~~aa~~ 636 (779)
++..|++|+.|.|...++. +++...+-+|. ..+. +++. ..++++|+||++||+.||.+|+++|+.+++++
T Consensus 13 ~l~~g~~d~~vRGsl~as~---~l~~Lk~~~g~---~~r~---slL~~~~g~~f~lapvgIde~~~~~~K~~Ii~~a~~~ 83 (202)
T TIGR03270 13 DLVNGRLDAAVRGSLSSSN---TIRELKKALGK---IYRA---SILETADGRIFLLAPVGIDEGWTISDKVKIIELASEF 83 (202)
T ss_pred HHHCCCCCEEEEECCCHHH---HHHHHHHHCCC---EEEE---EEEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 9866865668850442888---99999973273---5743---5332478978996465225786889999999999999
Q ss_pred HHHCCCCCCEEEEEECCCCC-CCCCCHHHHHHHHHHHHHHCCCCEEECCCCHHHHCCHHHHHHCCC--CCCCCCCCCEEE
Q ss_conf 99818997299997025578-889778999999999987379959986730465329898963089--987777777788
Q gi|254780137|r 637 ICSLGMRPKVSVLFHSNSGS-HCIKSSLKMRDSFEKICELSKNLEVDAIVQEEVCLSEIFCDKDVP--NTSSSQDAQLLV 713 (779)
Q Consensus 637 ar~lGiePkVAlLS~SnfGs-~~~~s~~kvr~A~eil~~~~pd~~VDGemq~D~AL~~~ia~~K~p--~S~laG~ANVLI 713 (779)
+|+||++||||+||+...|+ ..++..+ .+++|||+-+|.+.+...++++++ ++.++|.||+||
T Consensus 84 ~r~lGiePKVAvLS~grl~d~gr~~~Id--------------~si~d~e~~~~~~~~~~~a~h~gIliE~av~~~adiii 149 (202)
T TIGR03270 84 LRRLGREPKVAVLSGGRLGDVGRSPEVD--------------RSIADGELIARLLKDGMEIEHYGILIEEALKDGSNVII 149 (202)
T ss_pred HHHCCCCCCEEEEECCCHHCCCCCCCCC--------------CHHHHHHHHHHHHCCCCHHEECCEEEEHHHCCCCCEEE
T ss_conf 9980999855988644021057675422--------------15875899998630550002432531054458789898
Q ss_pred CCCHHHHHHHHHHHHHHCCCEEECHHHCCCCCCEEECCCCCCHHHHHHHHHHH
Q ss_conf 18912888999999986598687144314589879878763898899999999
Q gi|254780137|r 714 FPNIDSANIALEMAKSVTNGLHIGTLLLGAALPVHIVPSSVSVREIIDMVALV 766 (779)
Q Consensus 714 fPnLeAaNI~yKllq~lgga~aiGPIL~G~~kPV~ilsr~~Sv~dIvn~aAlA 766 (779)
+||++|||+.||.++++++++.+|++++|.++|+.++||++|.++.+|...+|
T Consensus 150 aPDg~sGNllfr~l~~l~~~~~~Ga~vlg~~~~~VdTSRa~s~e~y~~al~lA 202 (202)
T TIGR03270 150 APDGISGNLIFRSLALVGGGRSYGAPVLNDEGVFVDTSRSQTAEGYYNALKLA 202 (202)
T ss_pred ECCCCHHHHHHHHHHHHCCCCCCCCEEECCCCCEEECCCCCCHHHHHHHHHCC
T ss_conf 15721202999999997487656730126876179767676557887777529
No 23
>pfam00390 malic Malic enzyme, N-terminal domain.
Probab=99.97 E-value=5.1e-31 Score=233.06 Aligned_cols=118 Identities=42% Similarity=0.735 Sum_probs=107.7
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHH-HHHCCCCE----------------EEEECCCCEECCCCCCCCCCCCCHHHHHH
Q ss_conf 57214307305799999998899888-75135847----------------99981785002542205105830010089
Q gi|254780137|r 48 KDLSLAYSPGVAAPSMMIAEDPSKAA-MYTNRSNL----------------VAVVSNGSAVLGLGDIGPLASKPVMEGKA 110 (779)
Q Consensus 48 ~dl~~~ytpgva~~~~~i~~~~~~~~-~~t~~~n~----------------vaVvtdGt~vLGLGdiG~~a~~pvmeGK~ 110 (779)
+.|.++|||+|+++|.+......... -|.+..+. ++|||||+|||||||+|.+ ||||++||+
T Consensus 18 e~lPivYTPtVg~ac~~~s~~~~~~~Glyis~~d~g~i~~~l~nwp~~~v~~iVVTDGerILGLGDlG~~-Gm~I~iGKl 96 (182)
T pfam00390 18 EDLPIVYTPTVGEACQAISEIYRRPRGLYTSIGNLGKIKDILKNWPEEDVRVIVVTDGERILGLGDLGVA-GMPIMEGKL 96 (182)
T ss_pred HHCCEEECCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCC-CCCHHHHHH
T ss_conf 8589036872799999998742667658970266568999998288567359998567301466765657-650244599
Q ss_pred HHHHHHCCCC---EEEEECCC--------CCH-------------------HHHHHHHHHHCCCCCEEEHHHCCCCHHHH
Q ss_conf 9998626985---26542388--------988-------------------99999998708884606222064801579
Q gi|254780137|r 111 VLFKKFAGIN---VFDIEINA--------KDV-------------------DTMVSTIVALEPTFGGINLEDIKAPECFE 160 (779)
Q Consensus 111 ~L~k~~agid---~~~i~~~~--------~d~-------------------~e~i~~v~~~~p~fg~i~lEDi~~p~~f~ 160 (779)
.||++||||| ++||++|. +|| ||||++|+.+||.++.||||||++++||.
T Consensus 97 ~lYta~aGi~P~~~LPV~LDvGTnN~~Ll~Dp~YlG~r~~R~~g~eYd~f~deFv~av~~~~~p~~liqfEDF~~~nA~~ 176 (182)
T pfam00390 97 ALYTAFAGIDPSRVLPIVLDVGTNNEKLLNDPLYLGLRHKRVRGEEYDEFVDEFVEAVKALFPPFGGIQFEDFGAPNAFE 176 (182)
T ss_pred HHHHHHCCCCHHHCCCEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHH
T ss_conf 99988538874216877886687858871597556647788975899999999999999870998489864289542899
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254780137|r 161 VERILS 166 (779)
Q Consensus 161 i~~~l~ 166 (779)
+++|||
T Consensus 177 lLerYr 182 (182)
T pfam00390 177 ILERYR 182 (182)
T ss_pred HHHHCC
T ss_conf 998519
No 24
>TIGR02709 branched_ptb branched-chain phosphotransacylase; InterPro: IPR014081 This entry distinguishes branched-chain phosphotransacylases like that of Enterococcus faecalis from closely related subfamilies of phosphate butyryltransferase 2.3.1.19 from EC, (IPR014079 from INTERPRO) and phosphate acetyltransferase 2.3.1.8 from EC, (IPR004614 from INTERPRO). Members of this family and of IPR014079 from INTERPRO show considerable cross reactivity, and the occurrence of a member of either family proximate to an apparent leucine dehydrogenase will suggest activity on branched chain-acyl-CoA compounds..
Probab=99.95 E-value=1.7e-27 Score=208.79 Aligned_cols=266 Identities=16% Similarity=0.181 Sum_probs=212.1
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 69982477404679999998527508999559899999999849876654684230620255678999999998763799
Q gi|254780137|r 459 RILFSAGEDERVLRATQILIKENIARPVLIGSLLTIQDNIRRHDLQIIATKDFDVIDLNNKQSLKDYVDSYRSLSAEKGI 538 (779)
Q Consensus 459 RIVfaEgeD~rVLrAA~~~~eeGia~PILVG~~e~I~~~~~~~gL~l~~~~dieIidp~~~~~~~~ya~~l~~~~~RKG~ 538 (779)
+|..+-|..|.+|+-++.+.+|- +.-| .|-+.|..+.-..+..|++.|--
T Consensus 2 tvsiaGGsqPeilqlvkkalkea------------------eqPl------qfivfdtnenldtenlWkyvhCs------ 51 (271)
T TIGR02709 2 TVSIAGGSQPEILQLVKKALKEA------------------EQPL------QFIVFDTNENLDTENLWKYVHCS------ 51 (271)
T ss_pred EEEECCCCCHHHHHHHHHHHHHH------------------CCCE------EEEEEECCCCCCHHHHHEEEECC------
T ss_conf 67621788647999999987631------------------2870------68997155554512431001103------
Q ss_pred CHHHHHHHHHHCHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCC-CCEEEEECCCC
Q ss_conf 98999999862535678999865721001004467774046777776306876685012100135577-73499974736
Q gi|254780137|r 539 SLDSIYDLLRSNTTLLGSLALKRGEGDGMICMCDSESGYNSHLTDIHKIIGMGLGISHYSAMSMCIVR-DNFLFFTDTHV 617 (779)
Q Consensus 539 ~~~~A~~~vr~d~~~faa~MV~~G~AD~lI~G~~~t~~y~~~lr~~~~vIG~~~g~~~vs~~~il~~~-~~~lFiaDtaV 617 (779)
.+.|.. --+..+|..|.|..+++|.+.|..+..-+..-..-+.-+|=++++ .|+.++ +++++++||++
T Consensus 52 -deaava-------qeavslvatGqaqillkGiiqthtllkemlksehqlknkPilshv---amvelPaGktflltdCam 120 (271)
T TIGR02709 52 -DEAAVA-------QEAVSLVATGQAQILLKGIIQTHTLLKEMLKSEHQLKNKPILSHV---AMVELPAGKTFLLTDCAM 120 (271)
T ss_pred -CHHHHH-------HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE---EEEECCCCCEEEEHHHHH
T ss_conf -045676-------655554322315556676888889999986433433057501101---234427886420001132
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCC-CCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCHHHHCCHHHH
Q ss_conf 88989889999999999999981899-72999970255788897789999999999873799599867304653298989
Q gi|254780137|r 618 SAEPSAMEIADSTILASQAICSLGMR-PKVSVLFHSNSGSHCIKSSLKMRDSFEKICELSKNLEVDAIVQEEVCLSEIFC 696 (779)
Q Consensus 618 Ni~PtaEqLAdIa~~aa~~ar~lGie-PkVAlLS~SnfGs~~~~s~~kvr~A~eil~~~~pd~~VDGemq~D~AL~~~ia 696 (779)
|+.||-..|.+|..|+-++++++|.. ||+|+||+.+.-+|++|++.-.++...-...+ -+..|-||+++|.|-+++..
T Consensus 121 niaPtqatlieivenakevaqklGlhhPkiallsaaenfnPkmPssvlakevtahfn~q-qeatvfGPlsldlatseeav 199 (271)
T TIGR02709 121 NIAPTQATLIEIVENAKEVAQKLGLHHPKIALLSAAENFNPKMPSSVLAKEVTAHFNDQ-QEATVFGPLSLDLATSEEAV 199 (271)
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC-CCEEEECCCHHHHHHHHHHH
T ss_conf 12530367788887678999871676641442222342377775467776667542155-53056444000011003445
Q ss_pred HHCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCEEECHHHCCCCCCEEECCCCCCHHHHHHHHHHHH
Q ss_conf 63089987777777788189128889999999865986871443145898798787638988999999999
Q gi|254780137|r 697 DKDVPNTSSSQDAQLLVFPNIDSANIALEMAKSVTNGLHIGTLLLGAALPVHIVPSSVSVREIIDMVALVM 767 (779)
Q Consensus 697 ~~K~p~S~laG~ANVLIfPnLeAaNI~yKllq~lgga~aiGPIL~G~~kPV~ilsr~~Sv~dIvn~aAlA~ 767 (779)
.+|-...|+-|+||+||+|.+|-||-+||.+.-+|.++.-| -++|.+.||.++||++|.+..+++.-.|+
T Consensus 200 ahkrysGPimGdadilvvPtidvGnClyksltlfGhakvGG-tivGtkvPvvltsrsdsteskfhslrfam 269 (271)
T TIGR02709 200 AHKRYSGPIMGDADILVVPTIDVGNCLYKSLTLFGHAKVGG-TIVGTKVPVVLTSRSDSTESKFHSLRFAM 269 (271)
T ss_pred HHHCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCC-EEECCCCCEEEEECCCCCHHHHHHHHHHH
T ss_conf 32003687314655688534101146776665520000065-56402003788405653012354444321
No 25
>PRK05331 putative glycerol-3-phosphate acyltransferase PlsX; Provisional
Probab=99.82 E-value=2.9e-17 Score=138.12 Aligned_cols=260 Identities=15% Similarity=0.183 Sum_probs=197.0
Q ss_pred CHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 04679999998527-50899955989999999984987665468423062025567899999999876379998999999
Q gi|254780137|r 468 ERVLRATQILIKEN-IARPVLIGSLLTIQDNIRRHDLQIIATKDFDVIDLNNKQSLKDYVDSYRSLSAEKGISLDSIYDL 546 (779)
Q Consensus 468 ~rVLrAA~~~~eeG-ia~PILVG~~e~I~~~~~~~gL~l~~~~dieIidp~~~~~~~~ya~~l~~~~~RKG~~~~~A~~~ 546 (779)
..+++++..+.++. =.+.+|+|+++.|+..+++.... ...++|++..+.-... ..+..+.|.
T Consensus 16 ~~~v~Ga~~al~~~~d~~~~LvG~e~~i~~~l~~~~~~---~~~i~iiha~~~V~m~--------------d~p~~alR~ 78 (317)
T PRK05331 16 EVVVPGALQALKEHPDLEILLVGDEEKIKPLLAKYPAL---RERIEIVHASEVIGMD--------------DKPSQALRR 78 (317)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHCCCC---CCCEEEEECCCCCCCC--------------CCHHHHHHC
T ss_conf 88999999999878897699995899999999857776---3575899899656678--------------888999861
Q ss_pred HHHCHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCC-CCEEEEECCCCCCCCCHHH
Q ss_conf 862535678999865721001004467774046777776306876685012100135577-7349997473688989889
Q gi|254780137|r 547 LRSNTTLLGSLALKRGEGDGMICMCDSESGYNSHLTDIHKIIGMGLGISHYSAMSMCIVR-DNFLFFTDTHVSAEPSAME 625 (779)
Q Consensus 547 vr~d~~~faa~MV~~G~AD~lI~G~~~t~~y~~~lr~~~~vIG~~~g~~~vs~~~il~~~-~~~lFiaDtaVNi~PtaEq 625 (779)
-+....+.|.-+|+.|++|++++. .+|+. .+-....++|+-+|+.+.+-+..+++. +++..+-|.+-|++.++++
T Consensus 79 kk~SSm~~ai~lvk~g~ada~VSa-GnTGA---l~a~a~~~l~~i~gi~RPaia~~~Pt~~~~~~~llD~GAN~~~~~~~ 154 (317)
T PRK05331 79 KKDSSMRVALELVKEGEADACVSA-GNTGA---LMAAALFVLGRLPGIDRPAIATILPTLNGGGTVLLDLGANVDCKPEH 154 (317)
T ss_pred CCCCHHHHHHHHHHCCCCCEEEEC-CCHHH---HHHHHHHHHHCCCCCCCCCCCEECCCCCCCEEEEEECCCCCCCCHHH
T ss_conf 688719999999866887789954-73899---99999998612058776410111435799737999677478779899
Q ss_pred HHHHHHHHHHHHH-HCCCC-CCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCHHHHCCHHHHHHCCCCC
Q ss_conf 9999999999999-81899-729999702557888977899999999998737995998673046532989896308998
Q gi|254780137|r 626 IADSTILASQAIC-SLGMR-PKVSVLFHSNSGSHCIKSSLKMRDSFEKICELSKNLEVDAIVQEEVCLSEIFCDKDVPNT 703 (779)
Q Consensus 626 LAdIa~~aa~~ar-~lGie-PkVAlLS~SnfGs~~~~s~~kvr~A~eil~~~~pd~~VDGemq~D~AL~~~ia~~K~p~S 703 (779)
|.+.|++..-.+| .+|++ |||+|| |.|+.++.-..-.++|.+++++. +++.|-|-+..+ .
T Consensus 155 L~qfA~mGs~ya~~v~~i~~PrVgLL---NiG~E~~KG~~~~k~a~~lL~~~-~~~nf~G~iEg~--------------d 216 (317)
T PRK05331 155 LVQFAVMGSVYAEAVLGIENPRVGLL---NIGEEEIKGNELVKEAYELLKAA-PSINFIGNVEGR--------------D 216 (317)
T ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEC---CCCCCCCCCCHHHHHHHHHHHCC-CCCCEEEEECCC--------------C
T ss_conf 99999999999998479999828761---58765667679999999999649-998058010401--------------1
Q ss_pred CCCCCCCEEECCCHHHHHHHHHHHHHHC-----------------------------------CCEE-ECHHHCCCCCCE
Q ss_conf 7777777788189128889999999865-----------------------------------9868-714431458987
Q gi|254780137|r 704 SSSQDAQLLVFPNIDSANIALEMAKSVT-----------------------------------NGLH-IGTLLLGAALPV 747 (779)
Q Consensus 704 ~laG~ANVLIfPnLeAaNI~yKllq~lg-----------------------------------ga~a-iGPIL~G~~kPV 747 (779)
-+.|.+||+|.-.. +|||..|.+.-++ +.+. -|-+|+|++.+|
T Consensus 217 i~~g~~DVvV~DGF-tGNv~LKt~EG~~~~~~~~lk~~~~~~~~~k~~~ll~~~~l~~~~~~~d~~~~gGA~lLGl~g~v 295 (317)
T PRK05331 217 ILKGTADVVVCDGF-VGNVALKTSEGTAKMILSLLKEELKSSLLSKLGALLLKPALKRLKKKLDPREYGGAVLLGLNGIV 295 (317)
T ss_pred CCCCCCCEEEECCC-CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCCE
T ss_conf 46899978992895-01899999877999999999999840889999999999999999986691022985797488228
Q ss_pred EECCCCCCHHHHHHHHHHHH
Q ss_conf 98787638988999999999
Q gi|254780137|r 748 HIVPSSVSVREIIDMVALVM 767 (779)
Q Consensus 748 ~ilsr~~Sv~dIvn~aAlA~ 767 (779)
....-+++...+.|.+-.|.
T Consensus 296 ik~HG~S~~~a~~~AI~~A~ 315 (317)
T PRK05331 296 IKSHGSSDAKAFKNAIRQAV 315 (317)
T ss_pred EECCCCCCHHHHHHHHHHHH
T ss_conf 98178999899999999997
No 26
>pfam02504 FA_synthesis Fatty acid synthesis protein. The plsX gene is part of the bacterial fab gene cluster which encodes several key fatty acid biosynthetic enzymes. The exact function of the plsX protein in fatty acid synthesis is unknown.
Probab=99.79 E-value=4.7e-16 Score=129.81 Aligned_cols=263 Identities=15% Similarity=0.171 Sum_probs=197.1
Q ss_pred CHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 04679999998527-50899955989999999984987665468423062025567899999999876379998999999
Q gi|254780137|r 468 ERVLRATQILIKEN-IARPVLIGSLLTIQDNIRRHDLQIIATKDFDVIDLNNKQSLKDYVDSYRSLSAEKGISLDSIYDL 546 (779)
Q Consensus 468 ~rVLrAA~~~~eeG-ia~PILVG~~e~I~~~~~~~gL~l~~~~dieIidp~~~~~~~~ya~~l~~~~~RKG~~~~~A~~~ 546 (779)
..+++++..+.++. =.+.+|+|+++.|+..+.+..+ ...++|++..+.-.. ...+..+.|.
T Consensus 15 ~~vv~Ga~~al~~~~~~~i~LvG~e~~i~~~l~~~~~----~~~i~iv~a~~~I~m--------------~d~p~~a~Rk 76 (322)
T pfam02504 15 LEVVKGVLLAAKSAQDLDIVLVGDKDAIDPLVKEAEL----NSKLTIVHAEGVIEM--------------EDTPLAAIRK 76 (322)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHCCC----CCCCEEEECCCCCCC--------------CCCHHHHHHC
T ss_conf 8899999999987889769999299999999851676----568189968880168--------------9888999863
Q ss_pred HHHCHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCC-CEEEEECCCCCCCCCHHH
Q ss_conf 8625356789998657210010044677740467777763068766850121001355777-349997473688989889
Q gi|254780137|r 547 LRSNTTLLGSLALKRGEGDGMICMCDSESGYNSHLTDIHKIIGMGLGISHYSAMSMCIVRD-NFLFFTDTHVSAEPSAME 625 (779)
Q Consensus 547 vr~d~~~faa~MV~~G~AD~lI~G~~~t~~y~~~lr~~~~vIG~~~g~~~vs~~~il~~~~-~~lFiaDtaVNi~PtaEq 625 (779)
+....+.|.-+|+.|++|++++.- +|+. .+-....++|+-+|+.+.+-+..++..+ ++..+-|++-|++.++++
T Consensus 77 -k~SSm~~a~~lvk~g~ada~vSaG-nTGA---~~a~a~~~l~~i~gi~RPai~~~~Pt~~g~~~~lLD~GANv~~~~~~ 151 (322)
T pfam02504 77 -KKSSMAVAIDLVKEGEADAAVSAG-NTGA---LMALAMLRLGRIKGITRPALGTELPTVNGKFTVLLDVGANVDCKPKE 151 (322)
T ss_pred -CCCCHHHHHHHHHCCCCCEEEECC-CHHH---HHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEEEECCCCCCCCHHH
T ss_conf -688199999997320378899537-3799---99999998850058886446440455799758998478787779899
Q ss_pred HHHHHHHHHHHHH-HCCCC-CCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCHHHHCCHHHHHHCCCCC
Q ss_conf 9999999999999-81899-729999702557888977899999999998737995998673046532989896308998
Q gi|254780137|r 626 IADSTILASQAIC-SLGMR-PKVSVLFHSNSGSHCIKSSLKMRDSFEKICELSKNLEVDAIVQEEVCLSEIFCDKDVPNT 703 (779)
Q Consensus 626 LAdIa~~aa~~ar-~lGie-PkVAlLS~SnfGs~~~~s~~kvr~A~eil~~~~pd~~VDGemq~D~AL~~~ia~~K~p~S 703 (779)
|++.+++.+-.++ .+|++ |||+|| |.|+.++.-..-+++|.+++++ .+++.|-|-+..+ .
T Consensus 152 L~qFA~mG~~ya~~~~~~~~PrVgLL---NiG~E~~KG~~~~kea~~lL~~-~~~~nf~GnvEg~--------------~ 213 (322)
T pfam02504 152 LVQFALMGSVYAQSLLGIDSPRVGLL---NIGEEEVKGNDLHKQTFKLLKA-TPGYNFLGNVEGR--------------D 213 (322)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEE---ECCCCCCCCHHHHHHHHHHHHH-CCCCCEEEEECCC--------------C
T ss_conf 99999999999999729999808787---5565454653999999999982-8998445001301--------------0
Q ss_pred CCCCCCCEEECCCHHHHHHHHHHHHHHC-----------------------------------CCEE-ECHHHCCCCCCE
Q ss_conf 7777777788189128889999999865-----------------------------------9868-714431458987
Q gi|254780137|r 704 SSSQDAQLLVFPNIDSANIALEMAKSVT-----------------------------------NGLH-IGTLLLGAALPV 747 (779)
Q Consensus 704 ~laG~ANVLIfPnLeAaNI~yKllq~lg-----------------------------------ga~a-iGPIL~G~~kPV 747 (779)
-..|.+||+|.-. =+|||..|.+.-++ +.+. =|-.|+|++.+|
T Consensus 214 i~~g~~DVvV~DG-F~GNi~LKt~EG~~~~i~~~lk~~~~~~~~~k~~~ll~~~~l~~~~~~~d~~~~gGa~llGl~g~v 292 (322)
T pfam02504 214 ILDGVVDVIVCDG-FTGNVILKTAEGVAKFIGSILKDELKRSKLSKLGALLLSKALKRLKKKFDYKEYGGAVLLGLSGLV 292 (322)
T ss_pred CCCCCCCEEEECC-CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCE
T ss_conf 5789984899488-400999999878999999998988520778899999999999999863895311987897588438
Q ss_pred EECCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9878763898899999999999996
Q gi|254780137|r 748 HIVPSSVSVREIIDMVALVMASNNS 772 (779)
Q Consensus 748 ~ilsr~~Sv~dIvn~aAlA~~~A~~ 772 (779)
....=+++...+.|.+-.|.-.++.
T Consensus 293 vk~HG~S~~~a~~naI~~a~~~~~~ 317 (322)
T pfam02504 293 IKSHGSADKTAIFAAIRQAIELVQT 317 (322)
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 9757999989999999999999983
No 27
>PRK13845 putative glycerol-3-phosphate acyltransferase PlsX; Provisional
Probab=99.78 E-value=7e-16 Score=128.62 Aligned_cols=279 Identities=15% Similarity=0.199 Sum_probs=207.4
Q ss_pred CCCCEEEEEC---CCC---CHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCC-----CCCCCEEECCCHHHHHH
Q ss_conf 5894699824---774---046799999985275089995598999999998498766-----54684230620255678
Q gi|254780137|r 455 TDSKRILFSA---GED---ERVLRATQILIKENIARPVLIGSLLTIQDNIRRHDLQII-----ATKDFDVIDLNNKQSLK 523 (779)
Q Consensus 455 ~~pKRIVfaE---geD---~rVLrAA~~~~eeGia~PILVG~~e~I~~~~~~~gL~l~-----~~~dieIidp~~~~~~~ 523 (779)
.+.+|+-.|- |-| ..+++-+.++.++-=.+..|||++++|++.++++++.-. ....+|+++..++--.+
T Consensus 90 ~~~~r~wiAvD~MGGD~aP~~i~~G~l~a~~~~~~~i~~vg~~~~i~~~~~~~~~~e~~~~~~~~~~~~~v~s~~~i~m~ 169 (437)
T PRK13845 90 SDSDRIWVAVDGMGGDYAPGPILEGCLQAISRLPLNIKFVGEIEKVKEAAEALGLEELLEKAIDAGHLELIASGPSIGMD 169 (437)
T ss_pred CCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCHHHHHHHHHCCCEEEEECCCCCCCC
T ss_conf 56660699960578877867788999999986793599966779999999971606567765303757997179987877
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEECCC
Q ss_conf 99999999876379998999999862535678999865721001004467774046777776306876685012100135
Q gi|254780137|r 524 DYVDSYRSLSAEKGISLDSIYDLLRSNTTLLGSLALKRGEGDGMICMCDSESGYNSHLTDIHKIIGMGLGISHYSAMSMC 603 (779)
Q Consensus 524 ~ya~~l~~~~~RKG~~~~~A~~~vr~d~~~faa~MV~~G~AD~lI~G~~~t~~y~~~lr~~~~vIG~~~g~~~vs~~~il 603 (779)
+-+ .|.|.-+....+.|+-||+.|+||++++. .+|+. .+-....++|+-+|+.+.+-..++
T Consensus 170 e~a---------------~AVRrKKdSSi~vA~~LVK~G~AdA~vSA-GNTGA---lmA~a~~~Lgri~GI~RPAIa~~~ 230 (437)
T PRK13845 170 EEA---------------TAVRKKKDASINVAMDLVKKGKALAVYSA-GNSGA---MMASAIFRLGRLKGIDRPAIGALF 230 (437)
T ss_pred CHH---------------HHHHHCCCCHHHHHHHHHHCCCCCEEEEC-CCHHH---HHHHHHHEECCCCCCCCCCCCEEC
T ss_conf 337---------------77760462489999999865877689836-86389---998776113657998714106226
Q ss_pred CCC--CCEEEEECCCCCCCCCHHHHHHHHHHHHHHHH-HCCCC-CCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 577--73499974736889898899999999999999-81899-729999702557888977899999999998737995
Q gi|254780137|r 604 IVR--DNFLFFTDTHVSAEPSAMEIADSTILASQAIC-SLGMR-PKVSVLFHSNSGSHCIKSSLKMRDSFEKICELSKNL 679 (779)
Q Consensus 604 ~~~--~~~lFiaDtaVNi~PtaEqLAdIa~~aa~~ar-~lGie-PkVAlLS~SnfGs~~~~s~~kvr~A~eil~~~~pd~ 679 (779)
++. ++++++-|.+-|++.++|+|.+.+++..-.++ .||++ |||+|| |.|+....-....+++.++|++. +++
T Consensus 231 Pt~~~g~~~llLD~GANvdckpe~L~QFAiMGsiYAk~Vlgi~~PrVGLL---NIGeEe~KGnel~keA~~LLk~~-~~i 306 (437)
T PRK13845 231 PTKDPGQPVLVLDVGANMDCKPSYLHQFALLGNIYSRDVLQVKKPRIGLL---NIGEEECKGNDLSLKTFELLSEE-KRF 306 (437)
T ss_pred CCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEE---ECCCCCCCCCHHHHHHHHHHHCC-CCC
T ss_conf 76689973799978858998989999999999999999609999857876---45664555639999999998608-897
Q ss_pred EEECCCCHHHHCCHHHHHHCCCCCCCCCCCCEEECCCHHHHHHHHHHH--------------------------------
Q ss_conf 998673046532989896308998777777778818912888999999--------------------------------
Q gi|254780137|r 680 EVDAIVQEEVCLSEIFCDKDVPNTSSSQDAQLLVFPNIDSANIALEMA-------------------------------- 727 (779)
Q Consensus 680 ~VDGemq~D~AL~~~ia~~K~p~S~laG~ANVLIfPnLeAaNI~yKll-------------------------------- 727 (779)
.|-|-+... .-+.|.+||.|.-.. +|||..|..
T Consensus 307 NFiGNVEGr--------------DI~~G~~DVVVcDGF-tGNV~LKt~EG~a~~i~~~LK~~~~~s~~~Kigalllk~~L 371 (437)
T PRK13845 307 HFAGNCEGR--------------DVLSGDFDVVVCDGF-TGNVLLKFLESVGSVLLDVLRAELPRGRRGKVGSAFLRSNL 371 (437)
T ss_pred CEECCCCCC--------------CCCCCCCCEEEECCC-CCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_conf 331554401--------------035787878995784-01899998777999999999999874779999999999999
Q ss_pred ----HHHCCCEEECHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHH
Q ss_conf ----98659868714431458987987876389889999999999999
Q gi|254780137|r 728 ----KSVTNGLHIGTLLLGAALPVHIVPSSVSVREIIDMVALVMASNN 771 (779)
Q Consensus 728 ----q~lgga~aiGPIL~G~~kPV~ilsr~~Sv~dIvn~aAlA~~~A~ 771 (779)
+++.-.+.=|-.|+|++.+|.+.-=+++...|.|-.-+|.-.++
T Consensus 372 k~lkkrlD~~eyGGApLLGlnGivIksHGsS~A~Ai~nAIrvA~~~a~ 419 (437)
T PRK13845 372 KRIKKRLDHAEHGGALLLGVNGICVIGHGSSKALSVVSALRLAHSAAS 419 (437)
T ss_pred HHHHHHCCHHHCCCEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHH
T ss_conf 999876790015996686478528980788888999999999999997
No 28
>PRK13846 putative glycerol-3-phosphate acyltransferase PlsX; Provisional
Probab=99.78 E-value=6.5e-16 Score=128.82 Aligned_cols=254 Identities=15% Similarity=0.098 Sum_probs=189.5
Q ss_pred HHCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHH
Q ss_conf 85275089995598999999998498766546842306202556789999999987637999899999986253567899
Q gi|254780137|r 478 IKENIARPVLIGSLLTIQDNIRRHDLQIIATKDFDVIDLNNKQSLKDYVDSYRSLSAEKGISLDSIYDLLRSNTTLLGSL 557 (779)
Q Consensus 478 ~eeGia~PILVG~~e~I~~~~~~~gL~l~~~~dieIidp~~~~~~~~ya~~l~~~~~RKG~~~~~A~~~vr~d~~~faa~ 557 (779)
..+--.+-+|+|+++.+++..+...++ ..++|++.++--..+ -.+..+.|. +....+.|.-
T Consensus 31 ~~~~~~~~~l~g~~~~~~~~l~~~~~~----~~~~iv~a~~vi~m~--------------e~p~~alRk-k~sSm~~a~~ 91 (316)
T PRK13846 31 SSEQPVEFTVFASSEVHHQILSNSPLS----RSPKIIAAESFVSME--------------DSPLAAIRK-KSSSMALGLD 91 (316)
T ss_pred CCCCCEEEEEECCHHHHHHHHHCCCCC----CCCEEECCCCCCCCC--------------CCHHHHHHC-CCCHHHHHHH
T ss_conf 017984999977899999987347534----685798089720899--------------988998764-7658999999
Q ss_pred HHHCCCCCEEECCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 98657210010044677740467777763068766850121001355777349997473688989889999999999999
Q gi|254780137|r 558 ALKRGEGDGMICMCDSESGYNSHLTDIHKIIGMGLGISHYSAMSMCIVRDNFLFFTDTHVSAEPSAMEIADSTILASQAI 637 (779)
Q Consensus 558 MV~~G~AD~lI~G~~~t~~y~~~lr~~~~vIG~~~g~~~vs~~~il~~~~~~lFiaDtaVNi~PtaEqLAdIa~~aa~~a 637 (779)
+|+.|++|++++. .+|+ ..+-....++|+-+|+.+++-+..+++.++...+-|.+-|++.++++|.+.|++..-.+
T Consensus 92 lvk~g~ada~VSa-GnTG---A~ma~a~~~lg~i~gv~RPaia~~~Pt~~g~~~lLD~GANvd~~p~~L~qFA~MGs~ya 167 (316)
T PRK13846 92 YLQEDKLDAFIST-GNTA---ALVTLARAKIPMFPAVPRPALLVSVPTMRGFAVILDVGANVSVNPEEMVGFARMGLAYR 167 (316)
T ss_pred HHHCCCCCEEEEC-CCHH---HHHHHHHHHHHCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 9976898889965-7379---99999999870326987454533230789977999789787669999999999999999
Q ss_pred H-HCCCC-CCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCHHHHCCHHHHHHCCCCCCCCCCCCEEECC
Q ss_conf 9-81899-729999702557888977899999999998737995998673046532989896308998777777778818
Q gi|254780137|r 638 C-SLGMR-PKVSVLFHSNSGSHCIKSSLKMRDSFEKICELSKNLEVDAIVQEEVCLSEIFCDKDVPNTSSSQDAQLLVFP 715 (779)
Q Consensus 638 r-~lGie-PkVAlLS~SnfGs~~~~s~~kvr~A~eil~~~~pd~~VDGemq~D~AL~~~ia~~K~p~S~laG~ANVLIfP 715 (779)
+ .+|++ |||+|| |.|+.++.-..-.++|.++|++.. +..|-|-+..+ .-+.|.+||+|.-
T Consensus 168 ~~~~~~~~PrVgLL---NiG~E~~KG~~~~kea~~LL~~~~-~~nF~GnvEg~--------------di~~g~~DVvV~D 229 (316)
T PRK13846 168 QCLGSNQPPTIGLL---NIGSEERKGTEAHRQTFRMLRETF-GSAFLGNIESG--------------DVFSGKVDIVVTD 229 (316)
T ss_pred HHHCCCCCCEEEEE---ECCCCCCCCHHHHHHHHHHHHCCC-CCCEEEEECCC--------------CCCCCCCCEEEEC
T ss_conf 98469999869986---256645465899999999986086-66636653413--------------2579998489928
Q ss_pred CHHHHHHHHHHHHHHC-------------------CC-EEECHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9128889999999865-------------------98-6871443145898798787638988999999999999969
Q gi|254780137|r 716 NIDSANIALEMAKSVT-------------------NG-LHIGTLLLGAALPVHIVPSSVSVREIIDMVALVMASNNSN 773 (779)
Q Consensus 716 nLeAaNI~yKllq~lg-------------------ga-~aiGPIL~G~~kPV~ilsr~~Sv~dIvn~aAlA~~~A~~~ 773 (779)
.. +|||..|.+.-++ ++ +.=|..|+|++.+|.+..-+++...+.|.+-.|.-.++.+
T Consensus 230 GF-tGNv~LKt~EG~~~~l~~~l~~~l~~~~k~~~d~~~ygGA~LLGl~Givvk~HGsS~~~a~~nAI~~a~~~~~~~ 306 (316)
T PRK13846 230 GF-TGNIFLKTAEGVFDFLRHILGDKLEKDIKRQLDYTIYPGSIVCGLSKLVIKCHGKACGTSLFGGISGSIDLARAR 306 (316)
T ss_pred CC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCEEEEECCCCEEECCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 84-319999988789999999999999999987558312699888707843897589999899999999999999967
No 29
>COG0416 PlsX Fatty acid/phospholipid biosynthesis enzyme [Lipid metabolism]
Probab=99.75 E-value=4.3e-15 Score=123.13 Aligned_cols=267 Identities=15% Similarity=0.177 Sum_probs=193.5
Q ss_pred CHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 0467999999852-750899955989999999984987665468423062025567899999999876379998999999
Q gi|254780137|r 468 ERVLRATQILIKE-NIARPVLIGSLLTIQDNIRRHDLQIIATKDFDVIDLNNKQSLKDYVDSYRSLSAEKGISLDSIYDL 546 (779)
Q Consensus 468 ~rVLrAA~~~~ee-Gia~PILVG~~e~I~~~~~~~gL~l~~~~dieIidp~~~~~~~~ya~~l~~~~~RKG~~~~~A~~~ 546 (779)
..++.++.++.++ -=.+.||+|++++|+..+.++.-. ..+-++|++.++.-..++ .+..|.|.
T Consensus 16 ~~vv~g~~~al~~~~~~~~iLvGd~~~i~~~L~~~~~~--~~~~i~i~~a~~~I~m~d--------------~p~~AvR~ 79 (338)
T COG0416 16 EVVVPGALQALEEHPDLEIILVGDEDKIEPLLAKAPKL--LRERIEIVHAEEVIEMDD--------------KPSQALRK 79 (338)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCC--CCCCCEEEECCCCCCCCC--------------CHHHHHHC
T ss_conf 78899999999868993799977899989988416422--100543786453015787--------------88999872
Q ss_pred HHHCHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCC-CCCEEEEECCCCCCCCCHHH
Q ss_conf 86253567899986572100100446777404677777630687668501210013557-77349997473688989889
Q gi|254780137|r 547 LRSNTTLLGSLALKRGEGDGMICMCDSESGYNSHLTDIHKIIGMGLGISHYSAMSMCIV-RDNFLFFTDTHVSAEPSAME 625 (779)
Q Consensus 547 vr~d~~~faa~MV~~G~AD~lI~G~~~t~~y~~~lr~~~~vIG~~~g~~~vs~~~il~~-~~~~lFiaDtaVNi~PtaEq 625 (779)
.+....+.|..+|+.|+||++|+. .+|+.++.. ....+|+-+|+.+.+-+..+++ .++-..+-|.+-|++-++|+
T Consensus 80 k~~sSM~~A~~lVkeg~ADa~VSA-GnTGAlma~---a~~~lg~i~gI~RPAi~~~~Pt~~~~~~~~LDvGANvd~~~~~ 155 (338)
T COG0416 80 KKGSSMRVALDLVKEGKADACVSA-GNTGALMAL---ALLKLGRIKGIDRPALATLLPTIDGGKTVVLDVGANVDCKPEH 155 (338)
T ss_pred CCCCHHHHHHHHHHCCCCCEEEEC-CCHHHHHHH---HHHHHCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCCHHH
T ss_conf 788579999999856767779846-846999999---9987454778885511254435579814999678878889999
Q ss_pred HHHHHHHHHHHHH-HCCCC-CCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCHHHHCCHHHHHHCCCCC
Q ss_conf 9999999999999-81899-729999702557888977899999999998737995998673046532989896308998
Q gi|254780137|r 626 IADSTILASQAIC-SLGMR-PKVSVLFHSNSGSHCIKSSLKMRDSFEKICELSKNLEVDAIVQEEVCLSEIFCDKDVPNT 703 (779)
Q Consensus 626 LAdIa~~aa~~ar-~lGie-PkVAlLS~SnfGs~~~~s~~kvr~A~eil~~~~pd~~VDGemq~D~AL~~~ia~~K~p~S 703 (779)
|.+.|++..-.++ .+|++ |||+|| |.|+.++.-...+++|.++|++... +.|-|-+..+ .
T Consensus 156 L~qfA~MG~~ya~~v~~~~~PrVgLL---NIG~Ee~KG~e~~kea~~lLk~~~~-~nF~GnvEg~--------------d 217 (338)
T COG0416 156 LVQFALMGSAYAEKVLGIKNPRVGLL---NIGTEEIKGNELVKEAYELLKETPL-INFIGNVEGR--------------D 217 (338)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEE---ECCCCCCCCCHHHHHHHHHHHHCCC-CCEEEECCCC--------------C
T ss_conf 99999999999999628899967887---5655354587899999999974877-7536522542--------------1
Q ss_pred CCCCCCCEEECCCHHHHHHHHHHH------------------------------------HHHCCCEEECHHHCCCCCCE
Q ss_conf 777777778818912888999999------------------------------------98659868714431458987
Q gi|254780137|r 704 SSSQDAQLLVFPNIDSANIALEMA------------------------------------KSVTNGLHIGTLLLGAALPV 747 (779)
Q Consensus 704 ~laG~ANVLIfPnLeAaNI~yKll------------------------------------q~lgga~aiGPIL~G~~kPV 747 (779)
-+.|.+||+|.-.- +||+..|.+ +++.-.+.-|.+|+|++.+|
T Consensus 218 i~~G~~DVvV~DGF-tGNv~LKt~EG~a~~i~~~lK~~~~~s~~~klgall~k~~~k~lk~k~d~~~~~Ga~llGl~giV 296 (338)
T COG0416 218 ILDGTVDVVVTDGF-TGNVVLKTAEGTAKFILSLLKEEIKSSLKSKLGALLLKPALKRLKKKLDPSEYGGAVLLGLNGIV 296 (338)
T ss_pred CCCCCCCEEEECCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCEE
T ss_conf 23687778995796-01899998778999999999999887689999999875689999874886640982783167248
Q ss_pred EECCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 98787638988999999999999969
Q gi|254780137|r 748 HIVPSSVSVREIIDMVALVMASNNSN 773 (779)
Q Consensus 748 ~ilsr~~Sv~dIvn~aAlA~~~A~~~ 773 (779)
...--++..+.+.+-+-.|.-.++++
T Consensus 297 iKsHGsad~~a~~~AI~~a~~~~~~~ 322 (338)
T COG0416 297 IKSHGSADARAFASAIRQAYEMVKSQ 322 (338)
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 97168757899999999999999987
No 30
>TIGR00182 plsX fatty acid/phospholipid synthesis protein PlsX; InterPro: IPR003664 The plsX gene is part of the bacterial fab gene cluster which encodes several key fatty acid biosynthetic enzymes . The plsX gene encodes a poorly understood enzyme of phospholipid metabolism .; GO: 0003824 catalytic activity, 0006633 fatty acid biosynthetic process.
Probab=99.66 E-value=3e-14 Score=117.31 Aligned_cols=265 Identities=16% Similarity=0.176 Sum_probs=199.6
Q ss_pred CHHHHHHHH-HHHCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 046799999-9852750899955989999999984987665468423062025567899999999876379998999999
Q gi|254780137|r 468 ERVLRATQI-LIKENIARPVLIGSLLTIQDNIRRHDLQIIATKDFDVIDLNNKQSLKDYVDSYRSLSAEKGISLDSIYDL 546 (779)
Q Consensus 468 ~rVLrAA~~-~~eeGia~PILVG~~e~I~~~~~~~gL~l~~~~dieIidp~~~~~~~~ya~~l~~~~~RKG~~~~~A~~~ 546 (779)
..++.||.+ +..+.=-+-+||||++.|+..+....-+ ...+++++.++--..++ .+..|.|.
T Consensus 15 ~~~i~gv~~~~~~~~~l~~~LVGD~~~i~~~L~~~~~~---~~~~~~~~A~~~I~m~~--------------~p~~AiRR 77 (344)
T TIGR00182 15 SEVIEGVLRYASENQDLSIILVGDKDAIEPLLDKLPKN---QIKITIIHAQSVIEMTD--------------TPVEAIRR 77 (344)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCC---CCEEEEEECCCCCCCCC--------------HHHHHHHH
T ss_conf 46788999987510872389833725553675303213---66178871466526661--------------15477541
Q ss_pred HHHCHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCC--CEEEEECCCCCCCCCHH
Q ss_conf 8625356789998657210010044677740467777763068766850121001355777--34999747368898988
Q gi|254780137|r 547 LRSNTTLLGSLALKRGEGDGMICMCDSESGYNSHLTDIHKIIGMGLGISHYSAMSMCIVRD--NFLFFTDTHVSAEPSAM 624 (779)
Q Consensus 547 vr~d~~~faa~MV~~G~AD~lI~G~~~t~~y~~~lr~~~~vIG~~~g~~~vs~~~il~~~~--~~lFiaDtaVNi~PtaE 624 (779)
-+....+.|+-+|+.|.||++|+ +.+|+.|+.. ..-.+|+=.|+.+.+-++.|++.+ +.+.+-|.+=|.+-+.+
T Consensus 78 K~~sSm~~a~~lVkeg~ADa~iS-AG~sGa~m~l---a~l~lGri~G~~rPA~~t~~Pt~~P~~~~~~LDvGAN~dc~p~ 153 (344)
T TIGR00182 78 KKNSSMQVAMNLVKEGRADAVIS-AGNSGALMGL---ALLRLGRIKGIERPALVTLLPTVNPKDKFVLLDVGANVDCKPK 153 (344)
T ss_pred CCCHHHHHHHHHHHCCCCCEEEE-CCCHHHHHHH---HHHCCCCCCCCCCCEECCCCCCCCCCCEEEEEECCCCCCCCCC
T ss_conf 41027999999962699748998-6538999999---8640454156766510142770118962699855567578843
Q ss_pred HHHHHHHHHHHHHHH-CCCC-CCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCHHHHCCHHHHHHCCCC
Q ss_conf 999999999999998-1899-72999970255788897789999999999873799599867304653298989630899
Q gi|254780137|r 625 EIADSTILASQAICS-LGMR-PKVSVLFHSNSGSHCIKSSLKMRDSFEKICELSKNLEVDAIVQEEVCLSEIFCDKDVPN 702 (779)
Q Consensus 625 qLAdIa~~aa~~ar~-lGie-PkVAlLS~SnfGs~~~~s~~kvr~A~eil~~~~pd~~VDGemq~D~AL~~~ia~~K~p~ 702 (779)
.|.+.+++..-.++. +++. |||+|| |.|..+..--.-.+++.++|++ .+++.|-|=+- .+.
T Consensus 154 ~L~~fAlMG~vy~~~v~~~~sPkVgLL---NiGeE~~KG~~l~~~t~~~Lk~-~~~inF~GnvE--------~rd----- 216 (344)
T TIGR00182 154 YLVQFALMGSVYAKKVLGVDSPKVGLL---NIGEEDNKGNDLVKETFKLLKE-DPNINFIGNVE--------ARD----- 216 (344)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEEC---CCCCCCHHHHHHHHHHHHHHHC-CCCCCEEEEEC--------HHH-----
T ss_conf 233441013321111000589805623---5765002135668999999622-88776065200--------054-----
Q ss_pred CCCCCCCCEEECCCHHHHHHHHHHH------------------------------------HHHCCCE---EECHHHCCC
Q ss_conf 8777777778818912888999999------------------------------------9865986---871443145
Q gi|254780137|r 703 TSSSQDAQLLVFPNIDSANIALEMA------------------------------------KSVTNGL---HIGTLLLGA 743 (779)
Q Consensus 703 S~laG~ANVLIfPnLeAaNI~yKll------------------------------------q~lgga~---aiGPIL~G~ 743 (779)
-|.|..||||.=. =+||+..|.+ |++-... --|-.|+|+
T Consensus 217 -lL~G~~DV~VcDG-F~GNvvLKt~EGv~~~i~~~lK~~~~~~~rskl~al~~~~~lK~~~~k~dy~nPdqygGA~L~Gl 294 (344)
T TIGR00182 217 -LLDGVVDVLVCDG-FTGNVVLKTMEGVAKTILSILKDELKSKLRSKLAALLLKPILKSLKQKFDYANPDQYGGAVLLGL 294 (344)
T ss_pred -HHCCCEEEEEECC-CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECC
T ss_conf -3068646998438-41315777668999999999875248765437899872124567863146367543488377614
Q ss_pred CCCEEECCCCC-CHHHHHHHHHHHHHHHHHH
Q ss_conf 89879878763-8988999999999999969
Q gi|254780137|r 744 ALPVHIVPSSV-SVREIIDMVALVMASNNSN 773 (779)
Q Consensus 744 ~kPV~ilsr~~-Sv~dIvn~aAlA~~~A~~~ 773 (779)
+++| |-|.|+ ..+-+.+.+-+|.-..+++
T Consensus 295 ~~~v-iksHGss~~~a~~~AIrqA~~av~~q 324 (344)
T TIGR00182 295 NKLV-IKSHGSSDSRAIFSAIRQAKEAVKSQ 324 (344)
T ss_pred CCEE-EEECCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 7317-87237410357999999999999877
No 31
>PRK02848 consensus
Probab=99.09 E-value=4.8e-08 Score=74.53 Aligned_cols=291 Identities=14% Similarity=0.166 Sum_probs=177.6
Q ss_pred CCCEEEEECCCC-----CHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHH----H-
Q ss_conf 894699824774-----046799999985275089995598999999998498766546842306202556789----9-
Q gi|254780137|r 456 DSKRILFSAGED-----ERVLRATQILIKENIARPVLIGSLLTIQDNIRRHDLQIIATKDFDVIDLNNKQSLKD----Y- 525 (779)
Q Consensus 456 ~pKRIVfaEgeD-----~rVLrAA~~~~eeGia~PILVG~~e~I~~~~~~~gL~l~~~~dieIidp~~~~~~~~----y- 525 (779)
.+.||++.-||= |-++++...-.-...+.|+++|+++.+++.++.+++++. ++.++..+...... +
T Consensus 6 ~KP~IaIT~GDPaGIGpEIilKal~~~~~~~~~~~viigd~~~l~~~~~~~~~~~~----~~~i~~~~~~~~~~~~~~~i 81 (341)
T PRK02848 6 AKPVIALTLGDPAGIGPELIAKLLADPDVREKANIVLVGDRWLWEEGMRIAGVEVD----LEPVDSLAEARFATARPAFL 81 (341)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHCHHHCCCCCEEEEECHHHHHHHHHHCCCCCC----EEECCCHHHCCCCCCCCEEE
T ss_conf 99989993478743389999999847434069988999899999999998499985----35638645445132783485
Q ss_pred -HHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHCCCCCEEECCCCCCCC-------HHHHHHHHHHCCCCCCCCCEE
Q ss_conf -999999876379998999999862535678999865721001004467774-------046777776306876685012
Q gi|254780137|r 526 -VDSYRSLSAEKGISLDSIYDLLRSNTTLLGSLALKRGEGDGMICMCDSESG-------YNSHLTDIHKIIGMGLGISHY 597 (779)
Q Consensus 526 -a~~l~~~~~RKG~~~~~A~~~vr~d~~~faa~MV~~G~AD~lI~G~~~t~~-------y~~~lr~~~~vIG~~~g~~~v 597 (779)
+.......-.-|..-..+-+... +..-.|.-++..|++|++|++-++... |+.|.+..-+..|... .
T Consensus 82 ~~~~~~~~~~~~G~~s~~~g~~~~-~si~~Av~~~~~g~~~alVT~PInK~~l~~aG~~f~GHTE~la~~~~~~~----~ 156 (341)
T PRK02848 82 DLDTIDPADVVRGEATAAGGRYAL-ETLDLALDLARAGDVDAICFAPLNKQAMKLAGLRHEDELHWFAEYLGFTG----Y 156 (341)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHH-HHHHHHHHHHHCCCCCEEEECCCCHHHHHHCCCCCCCHHHHHHHHHCCCC----C
T ss_conf 066666244787985889999999-99999999997399788997766889995257898747999999848897----5
Q ss_pred EEECCCCCCCCEEEEECCCCCC-------CCCHHHHHHHHHHHHHHHHHCCCC-CCEEEEEE----CCCCCCCCCCHHHH
Q ss_conf 1001355777349997473688-------989889999999999999981899-72999970----25578889778999
Q gi|254780137|r 598 SAMSMCIVRDNFLFFTDTHVSA-------EPSAMEIADSTILASQAICSLGMR-PKVSVLFH----SNSGSHCIKSSLKM 665 (779)
Q Consensus 598 s~~~il~~~~~~lFiaDtaVNi-------~PtaEqLAdIa~~aa~~ar~lGie-PkVAlLS~----SnfGs~~~~s~~kv 665 (779)
..| ++..++ +.++=.+.|+ .-|.+.+.+.+....+..+++|++ ||+|++.. .+.|.--.|.-.-.
T Consensus 157 ~~~-~~~~~~--L~v~~~TtHipLk~V~~~It~~~I~~~i~~~~~~lk~~gi~~PrIaV~GLNPHAGE~G~~G~EE~~iI 233 (341)
T PRK02848 157 FCE-FNVLDD--LWTARVTSHIPLKDVAANLSQERILDAIELIYRSLRRAGVARPRIAVAALNPHGGDGGSFGREEIDII 233 (341)
T ss_pred CEE-EEECCC--EEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHH
T ss_conf 037-762386--47898516853999999873999999999999999981898985799954898765678761558989
Q ss_pred HHHHHHHHHHCCCCEEECCCCHHHHCCHHHHHHCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCEEECHHHCCCCC
Q ss_conf 99999998737995998673046532989896308998777777778818912888999999986598687144314589
Q gi|254780137|r 666 RDSFEKICELSKNLEVDAIVQEEVCLSEIFCDKDVPNTSSSQDAQLLVFPNIDSANIALEMAKSVTNGLHIGTLLLGAAL 745 (779)
Q Consensus 666 r~A~eil~~~~pd~~VDGemq~D~AL~~~ia~~K~p~S~laG~ANVLIfPnLeAaNI~yKllq~lgga~aiGPIL~G~~k 745 (779)
.-|++.+++. ++.++||+.+|.++.+..+ ++-|+.|.===|-|=|-.|++- +.++.. +-+|+
T Consensus 234 ~PAI~~l~~~--gi~v~GP~pADt~F~~~~~----------~~~D~vlaMYHDQglip~K~l~-f~~~vN---~TlGL-- 295 (341)
T PRK02848 234 EPAVEKARAR--GIPVDGPFPADTIFLKAQR----------GEFDAVVTMYHDQGQIAIKLMG-FSRGVT---VQGGL-- 295 (341)
T ss_pred HHHHHHHHHC--CEEEECCCCCHHHHHHHHC----------CCCCEEEEECCCCCCHHHHHCC-CCCCEE---EECCC--
T ss_conf 9999999978--9008799881889888652----------7899999835245306565335-787379---83489--
Q ss_pred CEEECCCC------------CCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 87987876------------38988999999999999969864
Q gi|254780137|r 746 PVHIVPSS------------VSVREIIDMVALVMASNNSNSSK 776 (779)
Q Consensus 746 PV~ilsr~------------~Sv~dIvn~aAlA~~~A~~~~~~ 776 (779)
|+.-+|.. ++....++..-+|.--+..|+.|
T Consensus 296 p~iRtSpDHGTa~diagk~~A~~~S~~~Ai~~A~~~~~~r~~~ 338 (341)
T PRK02848 296 PIPITTPAHGTAYDIAGKGIADVGATRQAFLIACRMGAARRAQ 338 (341)
T ss_pred CEEEECCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9216789987046650789899699999999999999964444
No 32
>PRK00232 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed
Probab=99.06 E-value=1.4e-07 Score=71.27 Aligned_cols=274 Identities=12% Similarity=0.078 Sum_probs=167.4
Q ss_pred CCEEEEECCCC-----CHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCEEECCCHHH-HHHHHHHHHH
Q ss_conf 94699824774-----04679999998527508999559899999999849876654684230620255-6789999999
Q gi|254780137|r 457 SKRILFSAGED-----ERVLRATQILIKENIARPVLIGSLLTIQDNIRRHDLQIIATKDFDVIDLNNKQ-SLKDYVDSYR 530 (779)
Q Consensus 457 pKRIVfaEgeD-----~rVLrAA~~~~eeGia~PILVG~~e~I~~~~~~~gL~l~~~~dieIidp~~~~-~~~~ya~~l~ 530 (779)
++||++.-||= |-++++...-.-...+.|+++|+++.+++.++.+++++. +..++..++. ....-.-..+
T Consensus 4 Kp~IaIT~GDPaGIGpEIilKal~~~~~~~~~~~viigd~~~l~~~~~~lg~~~~----~~~i~~~~~~~~~~~~~i~v~ 79 (334)
T PRK00232 4 KPRIAITPGDPAGIGPELIAKLLAQPDVRWPAHLVVIADRALLEERAAILGLPLD----LRPYSPDAPAAPQAAGTLTLL 79 (334)
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECHHHHHHHHHHCCCCCC----EEEECCHHHHHHCCCCCCEEE
T ss_conf 9828996888635389999999848130489888999889999999998599970----687377455443458982598
Q ss_pred H------HHHHCCCCHHHHHHHHHHCHHHHHHHHHHCCCCCEEECCCCCCC-------CHHHHHHHHHHCCCCCCCCCEE
Q ss_conf 9------87637999899999986253567899986572100100446777-------4046777776306876685012
Q gi|254780137|r 531 S------LSAEKGISLDSIYDLLRSNTTLLGSLALKRGEGDGMICMCDSES-------GYNSHLTDIHKIIGMGLGISHY 597 (779)
Q Consensus 531 ~------~~~RKG~~~~~A~~~vr~d~~~faa~MV~~G~AD~lI~G~~~t~-------~y~~~lr~~~~vIG~~~g~~~v 597 (779)
. ..-.-|..-..+-+..- +..-.|.-+++.|++|++|++-++.. .|+.|.+..-+..+.. .+
T Consensus 80 ~~~~~~~~~v~~G~~s~~~g~~~~-~~i~~Av~~~~~g~~~alVT~PInK~~i~~aG~~f~GHTE~La~~~~~~----~~ 154 (334)
T PRK00232 80 DVDLLDPADVPFGQLSAANGHYVL-ETLARALDLALAGEFDAICTAPVNKGAINAAGIPFSGHTEFFAELSGTT----GV 154 (334)
T ss_pred ECCCCCCCCCCCCCCCHHHHHHHH-HHHHHHHHHHHCCCCCEEEECCCCHHHHHHCCCCCCCHHHHHHHHHCCC----CC
T ss_conf 567675345788986889999999-9999999999759977898777578999857999898799999986899----80
Q ss_pred EEECCCCCCC-CEEEEEC----CCCCCCCCHHHHHHHHHHHHHHHHHCCCC-CCEEEEEE----CCCCCCCCCCHHHHHH
Q ss_conf 1001355777-3499974----73688989889999999999999981899-72999970----2557888977899999
Q gi|254780137|r 598 SAMSMCIVRD-NFLFFTD----THVSAEPSAMEIADSTILASQAICSLGMR-PKVSVLFH----SNSGSHCIKSSLKMRD 667 (779)
Q Consensus 598 s~~~il~~~~-~~lFiaD----taVNi~PtaEqLAdIa~~aa~~ar~lGie-PkVAlLS~----SnfGs~~~~s~~kvr~ 667 (779)
.| ||..++ ++.++|. --|-..-|.+.+.+.+....+..++.|++ ||+|++.. .+.|.--.|......-
T Consensus 155 -~M-ml~~~~L~V~l~TtHipLk~V~~~It~~~I~~~i~~~~~~lk~~gi~~PrIaV~GLNPHAGE~G~~G~EE~~iI~P 232 (334)
T PRK00232 155 -VM-MLATEELRVALVTTHIPLRDVADAITPERLERVIRLLHADLRRKGIAEPRIAVCGLNPHAGEGGHFGREEIDIIIP 232 (334)
T ss_pred -EE-EEECCCEEEEEEEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHH
T ss_conf -68-8973870699997247199998866999999999999999997299898479997289875456666733777999
Q ss_pred HHHHHHHHCCCCEEECCCCHHHHCCHHHHHHCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCEEECHHHCCCCCCE
Q ss_conf 99999873799599867304653298989630899877777777881891288899999998659868714431458987
Q gi|254780137|r 668 SFEKICELSKNLEVDAIVQEEVCLSEIFCDKDVPNTSSSQDAQLLVFPNIDSANIALEMAKSVTNGLHIGTLLLGAALPV 747 (779)
Q Consensus 668 A~eil~~~~pd~~VDGemq~D~AL~~~ia~~K~p~S~laG~ANVLIfPnLeAaNI~yKllq~lgga~aiGPIL~G~~kPV 747 (779)
|++.++++ ++.++||+..|.++.+..+. +-|+.|.===|-|=|-.|++-+- .+.. +-+|+ |+
T Consensus 233 aI~~l~~~--gi~v~GP~paDt~F~~~~~~----------~~D~~vamYHDQglip~K~~~f~-~~Vn---~tlGL--p~ 294 (334)
T PRK00232 233 ALEELRAE--GINLIGPLPADTLFLPAYLG----------DFDAVVAMYHDQGLPVLKYLGFG-RGVN---VTLGL--PF 294 (334)
T ss_pred HHHHHHHC--CCEEECCCCCHHHHHHHHCC----------CCCEEEEECCCCCHHHHHHCCCC-CCEE---EECCC--CE
T ss_conf 99999978--91288990828887765505----------89999995524312766523567-6279---95389--91
Q ss_pred EECCCCC-CHHHH
Q ss_conf 9878763-89889
Q gi|254780137|r 748 HIVPSSV-SVREI 759 (779)
Q Consensus 748 ~ilsr~~-Sv~dI 759 (779)
.-+|..- |.-||
T Consensus 295 iRtSpdHGTa~di 307 (334)
T PRK00232 295 IRTSVDHGTALDI 307 (334)
T ss_pred EEECCCCCCHHHH
T ss_conf 4778998706666
No 33
>PRK03743 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=98.98 E-value=1.8e-07 Score=70.61 Aligned_cols=273 Identities=15% Similarity=0.132 Sum_probs=161.7
Q ss_pred CEEEEECCCC-----CHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHH
Q ss_conf 4699824774-----04679999998527508999559899999999849876654684230620255678999999998
Q gi|254780137|r 458 KRILFSAGED-----ERVLRATQILIKENIARPVLIGSLLTIQDNIRRHDLQIIATKDFDVIDLNNKQSLKDYVDSYRSL 532 (779)
Q Consensus 458 KRIVfaEgeD-----~rVLrAA~~~~eeGia~PILVG~~e~I~~~~~~~gL~l~~~~dieIidp~~~~~~~~ya~~l~~~ 532 (779)
.+|++.-||= |-++++...-.-...+.|+++|+++.++..++.+++++. +..++..++...+.-.-.+...
T Consensus 4 P~IaIT~GDPaGIGpEIi~Kal~~~~~~~~~~~viigd~~~l~~~~~~l~~~~~----~~~i~~~~~~~~~~~~i~vi~~ 79 (333)
T PRK03743 4 PIIAIPMGDPAGIGPEIVVKSLNDKEIYDVCKPVVIGDAKVLEQAMKFCGVDLN----INKIKTPAEGKYELGTIDLIDL 79 (333)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHCCCHHCCCCEEEEECHHHHHHHHHHHCCCCC----EEECCCHHHHHCCCCCCEEEEC
T ss_conf 989993888517489999999958603408999999889999999998098985----3672887674354687127746
Q ss_pred ------HHHCCCCHHHHHHHHHHCHHHHHHHHHHCCCCCEEECCCCCCC-------CHHHHHHHHHHCCCCCCCCCEEEE
Q ss_conf ------7637999899999986253567899986572100100446777-------404677777630687668501210
Q gi|254780137|r 533 ------SAEKGISLDSIYDLLRSNTTLLGSLALKRGEGDGMICMCDSES-------GYNSHLTDIHKIIGMGLGISHYSA 599 (779)
Q Consensus 533 ------~~RKG~~~~~A~~~vr~d~~~faa~MV~~G~AD~lI~G~~~t~-------~y~~~lr~~~~vIG~~~g~~~vs~ 599 (779)
.-.-|.....+-+... +..-.|.-++..|++|++|++-++.. .|+.|....-+..+. .. .
T Consensus 80 ~~~~~~~~~~G~~s~~~g~~a~-~~l~~A~~~~~~g~~dalVT~PInK~~l~~ag~~f~GHTE~La~~~~~----~~--~ 152 (333)
T PRK03743 80 GNVDIDELKWGKVQALAGKAAF-EYIKKSVELAKAGKVDAIATTPINKEALKAAGVNYIGHTEILADLTDT----ED--P 152 (333)
T ss_pred CCCCCCCCCCCCCCHHHHHHHH-HHHHHHHHHHHCCCCCEEEECCCCHHHHHHCCCCCCCHHHHHHHHHCC----CC--C
T ss_conf 8776232677986889999999-999999999973986779878864554754489989879999998678----86--1
Q ss_pred ECCCCCCC-CEEEEECCCCC-----CCCCHHHHHHHHHHHHHHHHHCCCC-CCEEEEEE----CCCCCCCCCCHHHHHHH
Q ss_conf 01355777-34999747368-----8989889999999999999981899-72999970----25578889778999999
Q gi|254780137|r 600 MSMCIVRD-NFLFFTDTHVS-----AEPSAMEIADSTILASQAICSLGMR-PKVSVLFH----SNSGSHCIKSSLKMRDS 668 (779)
Q Consensus 600 ~~il~~~~-~~lFiaDtaVN-----i~PtaEqLAdIa~~aa~~ar~lGie-PkVAlLS~----SnfGs~~~~s~~kvr~A 668 (779)
+.||..++ ++.. .-++|- ..-|.+-+.+-+....+..|.||++ ||+|++.. .+.|.--.|.-.-+.-|
T Consensus 153 ~mml~~~~L~V~l-~TtHipLk~V~~~it~~~I~~~i~~~~~~lk~~gi~~PrIaV~GLNPHAGE~G~~G~EE~~iI~PA 231 (333)
T PRK03743 153 LTMFEVHNLRVFF-LTRHVSLRKACDLVTKERVLDYIIRCTKALEKLGVKNPKMAVAGLNPHSGEHGLFGREEMDEIVPA 231 (333)
T ss_pred EEHEECCCCEEEE-ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHH
T ss_conf 2000128737998-778888899977454899999999999999980999982899984898766676664131130999
Q ss_pred HHHHHHHCCCCEEECCCCHHHHCCHHHHHHCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCEEECHHHCCCCCCEE
Q ss_conf 99998737995998673046532989896308998777777778818912888999999986598687144314589879
Q gi|254780137|r 669 FEKICELSKNLEVDAIVQEEVCLSEIFCDKDVPNTSSSQDAQLLVFPNIDSANIALEMAKSVTNGLHIGTLLLGAALPVH 748 (779)
Q Consensus 669 ~eil~~~~pd~~VDGemq~D~AL~~~ia~~K~p~S~laG~ANVLIfPnLeAaNI~yKllq~lgga~aiGPIL~G~~kPV~ 748 (779)
++.++++ ++.++||+.+|+++.+..+ ++-|+.|.===|-|=|-.|++-+-.+.. +-+|+ |+.
T Consensus 232 I~~lk~~--gi~v~GP~paDt~F~~~~~----------~~~D~vlamYHDQglip~K~l~f~~~Vn----~tlGL--p~i 293 (333)
T PRK03743 232 IEEAQKM--GINVVGPVPADSVFHLALQ----------GRYDAVLSLYHDQGHIATKTLDFERTIS----ITNGL--PFL 293 (333)
T ss_pred HHHHHHC--CCCEECCCCCHHHHHHHCC----------CCCCEEEECCCCCCHHHHHHCCCCCCEE----EECCC--CEE
T ss_conf 9999977--9867689995677775115----------8889899767454207665235787479----94699--924
Q ss_pred ECCCCC-CHHHHH
Q ss_conf 878763-898899
Q gi|254780137|r 749 IVPSSV-SVREII 760 (779)
Q Consensus 749 ilsr~~-Sv~dIv 760 (779)
-+|+.- |.-||.
T Consensus 294 rtSpdHGTAfdIa 306 (333)
T PRK03743 294 RTSVDHGTAFDIA 306 (333)
T ss_pred EECCCCCCHHHHH
T ss_conf 7789987046661
No 34
>PRK05312 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=98.94 E-value=8.1e-07 Score=66.08 Aligned_cols=277 Identities=11% Similarity=0.095 Sum_probs=168.0
Q ss_pred CEEEEECCCC-----CHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCEEECCCHH-HHHHHH----HH
Q ss_conf 4699824774-----0467999999852750899955989999999984987665468423062025-567899----99
Q gi|254780137|r 458 KRILFSAGED-----ERVLRATQILIKENIARPVLIGSLLTIQDNIRRHDLQIIATKDFDVIDLNNK-QSLKDY----VD 527 (779)
Q Consensus 458 KRIVfaEgeD-----~rVLrAA~~~~eeGia~PILVG~~e~I~~~~~~~gL~l~~~~dieIidp~~~-~~~~~y----a~ 527 (779)
|+|++.-||= |-+++|-........+.|+++|+++.++..++.+++++. +..++..++ ...... ++
T Consensus 4 kpIaIT~GDPaGIGPEIi~Kal~~~~~~~~~~~vviGd~~~l~~~~~~l~~~~~----~~~i~~~~~~~~~~~~~l~v~~ 79 (336)
T PRK05312 4 RPLALTLGDPAGIGPEIALKAWLARRELGLPPFFLIGDPALLAARARLLGLAVP----IAEVSDPAEAAAAFADALPVLP 79 (336)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHCCCCCC----EEEECCHHHHHHCCCCEEEEEC
T ss_conf 988997378633169999999861445269998999599999999998599987----4783887787443588026850
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHCCCCCEEECCCCCCC-------CHHHHHHHHHHCCCCCCCCCEEEEE
Q ss_conf 999987637999899999986253567899986572100100446777-------4046777776306876685012100
Q gi|254780137|r 528 SYRSLSAEKGISLDSIYDLLRSNTTLLGSLALKRGEGDGMICMCDSES-------GYNSHLTDIHKIIGMGLGISHYSAM 600 (779)
Q Consensus 528 ~l~~~~~RKG~~~~~A~~~vr~d~~~faa~MV~~G~AD~lI~G~~~t~-------~y~~~lr~~~~vIG~~~g~~~vs~~ 600 (779)
.-...--.-|..-..+-+... +..-.|.-++..|++|++|++-++.. .|+.|.+..-+.-|.+.+.. ...+
T Consensus 80 ~~~~~~~~~G~~s~~~g~~a~-~~l~~Ai~~~~~g~idaiVT~PInK~~i~~aG~~f~GHTE~LA~l~g~~~~~~-~~~v 157 (336)
T PRK05312 80 LPHAAPVTPGKPDPANAAGVI-AAIERAVALVLSGAAAAVVTNPIAKKVLYEAGFAFPGHTEFLAELAGVALGKP-VQPV 157 (336)
T ss_pred CCCCCCCCCCCCCHHHHHHHH-HHHHHHHHHHHCCCCCEEEECCCCHHHHHHCCCCCCCHHHHHHHHHCCCCCCC-CCEE
T ss_conf 676667789985889999999-99999999997499889997875869897357888986999999855444677-7426
Q ss_pred CCCCCCC-CEEEEECCCC-----CCCCCHHHHHHHHHHHHHHHH-HCCCC-CCEEEEEE----CCCCCCCCCCHHHHHHH
Q ss_conf 1355777-3499974736-----889898899999999999999-81899-72999970----25578889778999999
Q gi|254780137|r 601 SMCIVRD-NFLFFTDTHV-----SAEPSAMEIADSTILASQAIC-SLGMR-PKVSVLFH----SNSGSHCIKSSLKMRDS 668 (779)
Q Consensus 601 ~il~~~~-~~lFiaDtaV-----Ni~PtaEqLAdIa~~aa~~ar-~lGie-PkVAlLS~----SnfGs~~~~s~~kvr~A 668 (779)
.+|..++ ++.+ .-++| -..-|.+.+.+-+....+..+ .||++ ||+|++.. .+.|.--.|....+.-|
T Consensus 158 Mml~~~~LrV~l-~TtHIpLk~V~~~It~~~I~~~i~l~~~~L~~~fgi~~PrIaV~GLNPHAGE~G~~G~EE~~iI~Pa 236 (336)
T PRK05312 158 MMLAGPQLRVVP-VTIHIPLRDVPAALTTELIVATARITAADLRRRFGIAAPRLAVAGLNPHAGEGGALGREDIDIIAPA 236 (336)
T ss_pred EEEECCCCEEEE-ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHH
T ss_conf 886158736888-5335059999765448999999999999999854988872899970898654566766348889999
Q ss_pred HHHHHHHCCCCEEECCCCHHHHCCHHHHHHCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCEEECHHHCCCCCCEE
Q ss_conf 99998737995998673046532989896308998777777778818912888999999986598687144314589879
Q gi|254780137|r 669 FEKICELSKNLEVDAIVQEEVCLSEIFCDKDVPNTSSSQDAQLLVFPNIDSANIALEMAKSVTNGLHIGTLLLGAALPVH 748 (779)
Q Consensus 669 ~eil~~~~pd~~VDGemq~D~AL~~~ia~~K~p~S~laG~ANVLIfPnLeAaNI~yKllq~lgga~aiGPIL~G~~kPV~ 748 (779)
++.++++ ++.++||+.+|.++.+..+. +-|+.|.-==|-|=|-.|++-+-.+.. +.+|+ |+.
T Consensus 237 i~~~~~~--gi~v~GP~paDt~F~~~~~~----------~~D~vlaMYHDQglip~K~l~f~~~vn----~tlGL--p~i 298 (336)
T PRK05312 237 IEQLRAE--GIDARGPLPADTMFHAAARA----------TYDAAICMYHDQALIPIKTLDFDEGVN----VTLGL--PFI 298 (336)
T ss_pred HHHHHHC--CCEEECCCCCHHHHHHHHHC----------CCCEEEECCCCCCHHHHHHCCCCCCEE----EECCC--CCE
T ss_conf 9999978--99467898966875444506----------889999834133679787445887479----81389--910
Q ss_pred ECCCCC-CHHHH
Q ss_conf 878763-89889
Q gi|254780137|r 749 IVPSSV-SVREI 759 (779)
Q Consensus 749 ilsr~~-Sv~dI 759 (779)
-+|..- |.-||
T Consensus 299 RtS~dHGTA~di 310 (336)
T PRK05312 299 RTSPDHGTAFDI 310 (336)
T ss_pred EECCCCCHHHHH
T ss_conf 678998704666
No 35
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=98.85 E-value=2.1e-08 Score=77.01 Aligned_cols=85 Identities=21% Similarity=0.247 Sum_probs=75.9
Q ss_pred CHHHHHHHHHHHHHHHHCCCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCC
Q ss_conf 18999999999999970988224117874254256789999998198857589995596030787332667889774508
Q gi|254780137|r 180 GTAVTVTAATLNGMKLVGKKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKS 259 (779)
Q Consensus 180 GTa~v~lA~llnAl~~~gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~ 259 (779)
+|+.++.+++..+.+.+++++++.+++++|+|.+|.+++++|...|.+ ++|+||+
T Consensus 1 ~Ta~~~v~~l~~~~~~~~~~l~~~~v~v~G~G~vg~~ia~ll~~~~~k--~V~~~d~----------------------- 55 (86)
T cd05191 1 ATAAGAVALLKAAGKVTNKSLKGKTVVVLGAGEVGKGIAKLLADEGGK--KVVLCDR----------------------- 55 (86)
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEECCC-----------------------
T ss_conf 951348999999999848775675899977860428999999981797--0787155-----------------------
Q ss_pred CCCCHHHHCCCCCEEEECCC-CCCCCHHHHHHCCCCCEEEEEC
Q ss_conf 89888886058837862578-8778988997218997799917
Q gi|254780137|r 260 GPKPLSETMNNADVFLGLSV-AGALDPAILKFMAEKPLIMVLA 301 (779)
Q Consensus 260 ~~~~l~ea~~~adv~iG~S~-~g~~t~e~v~~M~~~PiIfaLs 301 (779)
|+|++++. +..+.++..+.-++.|+||.++
T Consensus 56 ------------Di~v~~t~~~~~~~~~~~~~~~~~~vv~~~a 86 (86)
T cd05191 56 ------------DILVTATPAGVPVLEEATAKINEGAVVIDLA 86 (86)
T ss_pred ------------CEEEECCCCCCCCHHHHHHHCCCCCEEEECC
T ss_conf ------------5288605778712787764216871888539
No 36
>pfam04166 PdxA Pyridoxal phosphate biosynthetic protein PdxA. In Escherichia coli the coenzyme pyridoxal 5'-phosphate is synthesized de novo by a pathway that is thought to involve the condensation of 4-(phosphohydroxy)-L-threonine and 1-deoxy-D-xylulose, catalysed by the enzymes PdxA and PdxJ, to form either pyridoxine (vitamin B6) or pyridoxine 5'-phosphate.
Probab=98.83 E-value=1.1e-07 Score=72.13 Aligned_cols=249 Identities=13% Similarity=0.118 Sum_probs=148.6
Q ss_pred CCEEEEEECCHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHH-----HHHHHHHHHHHCCCCHHHHHHHHHHCHHHHH
Q ss_conf 75089995598999999998498766546842306202556789-----9999999876379998999999862535678
Q gi|254780137|r 481 NIARPVLIGSLLTIQDNIRRHDLQIIATKDFDVIDLNNKQSLKD-----YVDSYRSLSAEKGISLDSIYDLLRSNTTLLG 555 (779)
Q Consensus 481 Gia~PILVG~~e~I~~~~~~~gL~l~~~~dieIidp~~~~~~~~-----ya~~l~~~~~RKG~~~~~A~~~vr~d~~~fa 555 (779)
.+|.||++|+++.++..++.+++++. +..++..+...... .+..-+..--.-|..-.++-+.+. +..-.|
T Consensus 7 ~~C~PVViGd~~lL~~~ak~lgl~~~----i~~I~~~~~~~~~~~~i~~v~~~~~~~~~~~Gk~s~~~G~~~~-~~l~~A 81 (299)
T pfam04166 7 EKCTPVVIADEALLERAAKLLGLPLD----LRDIEFVEPAQEEPAGLLVIDPLPLKVPVVAGEVSAASGAYVL-ETLARA 81 (299)
T ss_pred CCCCEEEEECHHHHHHHHHHCCCCCE----EEEECCHHHCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHH-HHHHHH
T ss_conf 28979999899999999998299953----8980875544225687689705656777788985889999999-999999
Q ss_pred HHHHHCCCCCEEECCCCCCC-------CHHHHHHHHHHCCCCCCCCCEEEEECCCCCCC-CEEEEECCCC-----CCCCC
Q ss_conf 99986572100100446777-------40467777763068766850121001355777-3499974736-----88989
Q gi|254780137|r 556 SLALKRGEGDGMICMCDSES-------GYNSHLTDIHKIIGMGLGISHYSAMSMCIVRD-NFLFFTDTHV-----SAEPS 622 (779)
Q Consensus 556 a~MV~~G~AD~lI~G~~~t~-------~y~~~lr~~~~vIG~~~g~~~vs~~~il~~~~-~~lFiaDtaV-----Ni~Pt 622 (779)
.-+++.|+.|++|++-++.. .|+.|.+..-+..+.+ .+ .| ||..++ ++.++ -+++ -..-|
T Consensus 82 v~~~~~g~~dalVT~PInK~~i~~ag~~f~GHTE~La~~~~~~----~~-~M-ml~~~~LrV~lv-TtHipLk~V~~~It 154 (299)
T pfam04166 82 VALALDGEFDAIVTGPINKGALKDAGIPYSGHTEFLAERTGTH----SV-VM-MLATGDLRVALV-TTHIPLKDVPDAIT 154 (299)
T ss_pred HHHHHCCCCCEEEECCCCHHHHHHCCCCCCCHHHHHHHHHCCC----CE-EE-EEECCCCEEEEE-CCCCCHHHHHHHHH
T ss_conf 9999759988999797388999867999898689998763689----73-79-996497489995-34656999998751
Q ss_pred HHHHHHHHHHHHHHHH-HCCCC-CCEEEEEE----CCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCHHHHCCHHHH
Q ss_conf 8899999999999999-81899-72999970----255788897789999999999873799599867304653298989
Q gi|254780137|r 623 AMEIADSTILASQAIC-SLGMR-PKVSVLFH----SNSGSHCIKSSLKMRDSFEKICELSKNLEVDAIVQEEVCLSEIFC 696 (779)
Q Consensus 623 aEqLAdIa~~aa~~ar-~lGie-PkVAlLS~----SnfGs~~~~s~~kvr~A~eil~~~~pd~~VDGemq~D~AL~~~ia 696 (779)
.|.+.+-+....+..+ .||++ ||+|++.. .+.|.--.|....+.-|++.++. .++.+.||+..|.++.+..+
T Consensus 155 ~~~I~~~i~~~~~~l~~~~gi~~PrIaV~gLNPHaGE~G~~G~EE~~iI~Pai~~~~~--~gi~v~GP~paDt~F~~~~~ 232 (299)
T pfam04166 155 FELVEDFLRLLHKALREKFGIAEPRIAVAGLNPHAGEGGVLGREEIEEIIPALEQARA--EGIDLLGPLPADTAFRPVLL 232 (299)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHH--CCCCCCCCCCCHHHHHHHHC
T ss_conf 9999999999999999964998980899944887665555641447888999999885--49975889794377654110
Q ss_pred HHCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCEEECHHHCCCCCCEEECCCCC-CHHHH
Q ss_conf 6308998777777778818912888999999986598687144314589879878763-89889
Q gi|254780137|r 697 DKDVPNTSSSQDAQLLVFPNIDSANIALEMAKSVTNGLHIGTLLLGAALPVHIVPSSV-SVREI 759 (779)
Q Consensus 697 ~~K~p~S~laG~ANVLIfPnLeAaNI~yKllq~lgga~aiGPIL~G~~kPV~ilsr~~-Sv~dI 759 (779)
. +-|+.|.-==|-|-|-.|++-.-.+. . +-+|+ |+.-+|..- |.-||
T Consensus 233 ~----------~~D~v~amYHDQglip~K~~~f~~~v-n---~t~GL--p~irtS~dHGta~di 280 (299)
T pfam04166 233 G----------RYDAVLAMYHDQGLIPLKYLGFDRGV-N---VTLGL--PIIRTSVDHGTAFDI 280 (299)
T ss_pred C----------CCCEEEEECCCCCCHHHHHCCCCCCE-E---EECCC--CEEEECCCCCCHHHH
T ss_conf 5----------78999980524420766533568737-9---94489--923778998705666
No 37
>PRK03877 consensus
Probab=98.83 E-value=1.8e-07 Score=70.61 Aligned_cols=271 Identities=14% Similarity=0.121 Sum_probs=162.7
Q ss_pred EEEEECCCC-----CHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHH-HHHHH---
Q ss_conf 699824774-----046799999985275089995598999999998498766546842306202556789-99999---
Q gi|254780137|r 459 RILFSAGED-----ERVLRATQILIKENIARPVLIGSLLTIQDNIRRHDLQIIATKDFDVIDLNNKQSLKD-YVDSY--- 529 (779)
Q Consensus 459 RIVfaEgeD-----~rVLrAA~~~~eeGia~PILVG~~e~I~~~~~~~gL~l~~~~dieIidp~~~~~~~~-ya~~l--- 529 (779)
+|++.-||= |-+++|...-.-...++|+++|+++.+++.++.+++++. +..++..++..... ....+
T Consensus 4 ~IaIT~GDPaGIGpEIilKal~~~~~~~~~~~vvigd~~~l~~~~~~~~~~~~----~~~i~~~~~~~~~~~~i~~~~~~ 79 (328)
T PRK03877 4 IIGITMGDAAGVGPEIIVKALADKSVYEQCRPLVIGDAKRLERAGRIVGSELK----VRAIQDPDEARFEFGTIDCIDLD 79 (328)
T ss_pred EEEEECCCCCHHHHHHHHHHHHCCHHHCCCCEEEEECHHHHHHHHHHCCCCCC----EEECCCHHHHHCCCCCCEEEECC
T ss_conf 79991588537699999999968113505999999789999999998299971----46738977852358931587455
Q ss_pred -HHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHCCCCCEEECCCCCCC-------CHHHHHHHHHHCCCCCCCCCEEEEEC
Q ss_conf -9987637999899999986253567899986572100100446777-------40467777763068766850121001
Q gi|254780137|r 530 -RSLSAEKGISLDSIYDLLRSNTTLLGSLALKRGEGDGMICMCDSES-------GYNSHLTDIHKIIGMGLGISHYSAMS 601 (779)
Q Consensus 530 -~~~~~RKG~~~~~A~~~vr~d~~~faa~MV~~G~AD~lI~G~~~t~-------~y~~~lr~~~~vIG~~~g~~~vs~~~ 601 (779)
....-.-|..-..+-+... +..-.|.-++..|++|+||++-++.. .|+.|.+..-+.-+. ..+ .|
T Consensus 80 ~~~~~~~~G~~~~~~g~~~~-~sl~~A~~~~~~g~~~alVT~PInK~~i~~ag~~f~GHTE~La~~~~~----~~~-~M- 152 (328)
T PRK03877 80 LLPADLPFGKVSAVAGDAAF-RYIERAVELAKAGKIDAICTAPLNKEALHAGGHMFPGHTEILAHLTGT----EEV-SM- 152 (328)
T ss_pred CCCCCCCCCCCCHHHHHHHH-HHHHHHHHHHHCCCCCEEEECCCCHHHHHHCCCCCCCHHHHHHHHHCC----CCE-EE-
T ss_conf 46677788987988999999-999999999974986879967806788985799989819999988647----872-57-
Q ss_pred CCCCCCCEEEEECCCCC-------CCCCHHHHHHHHHHHHHHHHHCCCC-CCEEEEEE----CCCCCCCC-CCHHHHHHH
Q ss_conf 35577734999747368-------8989889999999999999981899-72999970----25578889-778999999
Q gi|254780137|r 602 MCIVRDNFLFFTDTHVS-------AEPSAMEIADSTILASQAICSLGMR-PKVSVLFH----SNSGSHCI-KSSLKMRDS 668 (779)
Q Consensus 602 il~~~~~~lFiaDtaVN-------i~PtaEqLAdIa~~aa~~ar~lGie-PkVAlLS~----SnfGs~~~-~s~~kvr~A 668 (779)
||..++ |-++=.+.| ..-|.+-+.+......+..++||++ ||+|++.. .+-|.--. |.-..+.-|
T Consensus 153 ml~~~~--LrV~l~TtHipLk~V~~~It~~~I~~~i~l~~~~lk~~gi~~PrIaV~GLNPHAGE~G~~G~~EE~~iI~Pa 230 (328)
T PRK03877 153 MLVSPK--LKVIHVTTHVGLIDAIDKIEPERVYRVIELAHETLVRAGIKNPRIAVCGINPHAGENGLFGYGEEEEKIVPA 230 (328)
T ss_pred EEECCC--CEEEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHH
T ss_conf 785598--689985005747999985399999999999999999809999718998527987655665862678779999
Q ss_pred HHHHHHHCCCCEEECCCCHHHHCCHHHHHHCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCEEECHHHCCCCCCEE
Q ss_conf 99998737995998673046532989896308998777777778818912888999999986598687144314589879
Q gi|254780137|r 669 FEKICELSKNLEVDAIVQEEVCLSEIFCDKDVPNTSSSQDAQLLVFPNIDSANIALEMAKSVTNGLHIGTLLLGAALPVH 748 (779)
Q Consensus 669 ~eil~~~~pd~~VDGemq~D~AL~~~ia~~K~p~S~laG~ANVLIfPnLeAaNI~yKllq~lgga~aiGPIL~G~~kPV~ 748 (779)
++.++++ .+.++||+.+|+++.+..+ ++-|+.|.===|-|=|-.|++-+-.+ .. +-+|+ |+.
T Consensus 231 I~~l~~~--gi~i~GP~paDt~F~~~~~----------~~~D~vlaMYHDQglip~K~l~f~~~-vn---~TlGL--p~i 292 (328)
T PRK03877 231 IEAAQAE--GIDVEGPLPADTLFFRAGR----------GDFDLVVAMYHDQGHGPVKVLGLEAG-VN---ITVGL--PVI 292 (328)
T ss_pred HHHHHHC--CCEEECCCCCHHHHHHHHC----------CCCCEEEEECCCCCCHHHHHCCCCCC-EE---EECCC--CEE
T ss_conf 9999978--9708857381889887644----------78999999553553165642247874-79---95699--913
Q ss_pred ECCCCC-CHHHHH
Q ss_conf 878763-898899
Q gi|254780137|r 749 IVPSSV-SVREII 760 (779)
Q Consensus 749 ilsr~~-Sv~dIv 760 (779)
-+|+.- |.-||.
T Consensus 293 rtSpdHGta~dia 305 (328)
T PRK03877 293 RTSVDHGTAFDIA 305 (328)
T ss_pred EECCCCCCHHHHH
T ss_conf 7789987056660
No 38
>PRK01909 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=98.81 E-value=9.1e-06 Score=58.83 Aligned_cols=267 Identities=12% Similarity=0.064 Sum_probs=162.8
Q ss_pred CCCEEEEECCCC-----CHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHCCCCCCCCC---CCEEECCCHHHHHHHHH
Q ss_conf 894699824774-----046799999985-275089995598999999998498766546---84230620255678999
Q gi|254780137|r 456 DSKRILFSAGED-----ERVLRATQILIK-ENIARPVLIGSLLTIQDNIRRHDLQIIATK---DFDVIDLNNKQSLKDYV 526 (779)
Q Consensus 456 ~pKRIVfaEgeD-----~rVLrAA~~~~e-eGia~PILVG~~e~I~~~~~~~gL~l~~~~---dieIidp~~~~~~~~ya 526 (779)
+|-||++.-||= |-+++|-..... ..-+.++++|+++.+++.++.+++++.... .+.+.+......
T Consensus 4 ~~lrIaIT~GDPaGIGPEIilKal~~~~~~~~~~~~vviGd~~~l~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~----- 78 (329)
T PRK01909 4 QPLQIAITTGEPAGVGPELTVQALADAATRWPDARFTVLGDAALLAARAAAVGVDWARLAAGGHVSVAHRALAAP----- 78 (329)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHCCCCHHHHCCCCCCCEECCCCCCC-----
T ss_conf 997699975888501799999999865754689888999799999999998399835504689751521677787-----
Q ss_pred HHHHHHHHHCCC-CHHHHHHHHHHCHHHHHHHHHHCCCCCEEECCCCCCC-------CHHHHHHHHHHCCCCCCCCCEEE
Q ss_conf 999998763799-9899999986253567899986572100100446777-------40467777763068766850121
Q gi|254780137|r 527 DSYRSLSAEKGI-SLDSIYDLLRSNTTLLGSLALKRGEGDGMICMCDSES-------GYNSHLTDIHKIIGMGLGISHYS 598 (779)
Q Consensus 527 ~~l~~~~~RKG~-~~~~A~~~vr~d~~~faa~MV~~G~AD~lI~G~~~t~-------~y~~~lr~~~~vIG~~~g~~~vs 598 (779)
..-|. +.+...-.+ +..-.|.-+++.|++|++|++-++.. .|+.|.+..-+..+. ..
T Consensus 79 -------~~~G~~~~~~g~~~~--~~l~~Av~~~~~g~~dalVTaPInK~~i~~aG~~f~GHTE~La~~~~~----~~-- 143 (329)
T PRK01909 79 -------AEAGKLDAANGRYVL--DLLDAAIDGALAGRYDAIVTAPLQKSTINDAGVPFTGHTEYLAERTHT----PR-- 143 (329)
T ss_pred -------CCCCCCCHHHHHHHH--HHHHHHHHHHHCCCCCEEEECCCCHHHHHHCCCCCCCHHHHHHHHHCC----CC--
T ss_conf -------878980889999999--999999999975988899977128999986799989878999998389----97--
Q ss_pred EECCCCCC-CCEEEEECCCCCC-------CCCHHHHHHHHHHHHHHH-HHCCCC-CCEEEEEE----CCCCCCCCCCHHH
Q ss_conf 00135577-7349997473688-------989889999999999999-981899-72999970----2557888977899
Q gi|254780137|r 599 AMSMCIVR-DNFLFFTDTHVSA-------EPSAMEIADSTILASQAI-CSLGMR-PKVSVLFH----SNSGSHCIKSSLK 664 (779)
Q Consensus 599 ~~~il~~~-~~~lFiaDtaVNi-------~PtaEqLAdIa~~aa~~a-r~lGie-PkVAlLS~----SnfGs~~~~s~~k 664 (779)
.++|+... ++.+-++=.+.|+ .-|.+-+.+.+....... +.||++ ||+|++.. .+-|.--.|....
T Consensus 144 ~~Mml~~~~~~~LrV~l~T~HipLk~V~~~It~~~I~~~i~~~~~~l~~~fgi~~PrIaV~GLNPHAGE~G~~G~EE~~i 223 (329)
T PRK01909 144 VVMMLAGTGERPLRVALATTHLPLRDVSAALTIDGLVETLAIIDRDLRRDFGLAAPRILVTGLNPHAGENGYLGREEIDV 223 (329)
T ss_pred EEEEEEECCCCCEEEEEECCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCHHHHHH
T ss_conf 59999866998379998456611999998423479999999999999984488898599995089876556663377888
Q ss_pred HHHHHHHHHHHCCCCEEECCCCHHHHCCHHHHHHCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCEEECHHHCCCC
Q ss_conf 99999999873799599867304653298989630899877777777881891288899999998659868714431458
Q gi|254780137|r 665 MRDSFEKICELSKNLEVDAIVQEEVCLSEIFCDKDVPNTSSSQDAQLLVFPNIDSANIALEMAKSVTNGLHIGTLLLGAA 744 (779)
Q Consensus 665 vr~A~eil~~~~pd~~VDGemq~D~AL~~~ia~~K~p~S~laG~ANVLIfPnLeAaNI~yKllq~lgga~aiGPIL~G~~ 744 (779)
+.-|++.++++. +.++||+..|+++.+..+ ++-|+.|.===|-|=|-.|++-+-.+.. +-+|+
T Consensus 224 I~PAI~~~~~~g--i~v~GP~paDt~F~~~~~----------~~~D~vlaMYHDQglip~K~l~f~~~vn----~TlGL- 286 (329)
T PRK01909 224 IEPALARARAAG--IDARGPYPADTLFQPRHL----------EDADCVLAMFHDQGLPVLKYATFGEGIN----VTLGL- 286 (329)
T ss_pred HHHHHHHHHHCC--CCCCCCCCCHHHHHHHHC----------CCCCEEEECCCCCCHHHHHHCCCCCCEE----EECCC-
T ss_conf 999999998479--962006793789899757----------7989999855012358787535787379----93489-
Q ss_pred CCEEECCCCC-CHHHHH
Q ss_conf 9879878763-898899
Q gi|254780137|r 745 LPVHIVPSSV-SVREII 760 (779)
Q Consensus 745 kPV~ilsr~~-Sv~dIv 760 (779)
|+.-+|..- |.-||.
T Consensus 287 -p~iRtS~dHGTA~diA 302 (329)
T PRK01909 287 -PIIRTSVDHGTALDLA 302 (329)
T ss_pred -CCEEECCCCCHHHHHH
T ss_conf -9106789987156662
No 39
>PRK02746 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=98.76 E-value=2.5e-06 Score=62.68 Aligned_cols=274 Identities=12% Similarity=0.118 Sum_probs=163.6
Q ss_pred CEEEEECCCC-----CHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCC----CCCCCCCEEECCCHHHHHHHHHHH
Q ss_conf 4699824774-----0467999999852750899955989999999984987----665468423062025567899999
Q gi|254780137|r 458 KRILFSAGED-----ERVLRATQILIKENIARPVLIGSLLTIQDNIRRHDLQ----IIATKDFDVIDLNNKQSLKDYVDS 528 (779)
Q Consensus 458 KRIVfaEgeD-----~rVLrAA~~~~eeGia~PILVG~~e~I~~~~~~~gL~----l~~~~dieIidp~~~~~~~~ya~~ 528 (779)
.||++.-||= |-+++|-..-.-...+.|+++|++..+++..+++... +.....+.++|......
T Consensus 2 P~IaIT~GDPaGIGpEIilKal~~~~~~~~~~~vvig~~~~l~~~~~~l~~~~~~~~~~~~~i~v~~~~~~~~------- 74 (332)
T PRK02746 2 PRLAITLGDPAGIGPEVILKALASPELPKNIQPTLVGCRQLLEATYQQLKSLGIEPLADPANLDILDLPLDSE------- 74 (332)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCHHHCCCCCEEEEECHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCC-------
T ss_conf 9899905885366899999998571000698999997999999999984448865658811061650577777-------
Q ss_pred HHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHCCCCCEEECCCCCCC-------CHHHHHHHHHHCCCCCCCCCEEEEEC
Q ss_conf 99987637999899999986253567899986572100100446777-------40467777763068766850121001
Q gi|254780137|r 529 YRSLSAEKGISLDSIYDLLRSNTTLLGSLALKRGEGDGMICMCDSES-------GYNSHLTDIHKIIGMGLGISHYSAMS 601 (779)
Q Consensus 529 l~~~~~RKG~~~~~A~~~vr~d~~~faa~MV~~G~AD~lI~G~~~t~-------~y~~~lr~~~~vIG~~~g~~~vs~~~ 601 (779)
-.-|....++-+... +..-.|.-++..|++|+||++-++.. .|+.|.+..-+.-|.+ .+ .|
T Consensus 75 -----~~~G~~~~~~g~~~~-~~l~~Av~~~~~g~~~alVT~PInK~~i~~ag~~F~GHTE~La~~~~~~----~~-~M- 142 (332)
T PRK02746 75 -----ITPGKGSAASGAASF-AYLTTAIEITLEGEFRALVTAPIAKSAWHAAGHHYPGQTEVLAELAGVE----RF-GM- 142 (332)
T ss_pred -----CCCCCCCHHHHHHHH-HHHHHHHHHHHCCCCCEEEECCCCHHHHHHCCCCCCCHHHHHHHHHCCC----CE-EE-
T ss_conf -----788986989999999-9999999999759977787578568999746788776899999985899----72-59-
Q ss_pred CCCCC-------CCEEEEECCCCCC-----CCCHHHHHHHHHHHHHHHHHCCCC-CCEEEEEE----CCCCCCCCCCHHH
Q ss_conf 35577-------7349997473688-----989889999999999999981899-72999970----2557888977899
Q gi|254780137|r 602 MCIVR-------DNFLFFTDTHVSA-----EPSAMEIADSTILASQAICSLGMR-PKVSVLFH----SNSGSHCIKSSLK 664 (779)
Q Consensus 602 il~~~-------~~~lFiaDtaVNi-----~PtaEqLAdIa~~aa~~ar~lGie-PkVAlLS~----SnfGs~~~~s~~k 664 (779)
||..+ =|+.+ .-++|-. .-|.+.+.+-+....+..++ |++ ||+|++.- .+.|.--.|....
T Consensus 143 ml~~~s~~~~~~LrV~l-~TtHipLk~V~~~It~~~I~~~i~~~~~~lk~-gi~~PrIaV~GLNPHAGE~G~~G~EE~~i 220 (332)
T PRK02746 143 LFTARSPHTGWRLNTLL-ATTHIPLSQVPKTLTPELITSKLDLLLDFCRK-FIDKPRIAIAGLNPHAGEQGQLGSEEKDW 220 (332)
T ss_pred EEEECCCCCCCCEEEEE-EECCCCHHHHHHHHCHHHHHHHHHHHHHHHHH-CCCCCCEEEEECCCCCCCCCCCCCCCHHH
T ss_conf 98743666676147987-50565799999875999999999999999982-88788748996488876567677321011
Q ss_pred HHHHHHHHHHHCCCCEEECCCCHHHHCCHHHHHHCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCEEECHHHCCCC
Q ss_conf 99999999873799599867304653298989630899877777777881891288899999998659868714431458
Q gi|254780137|r 665 MRDSFEKICELSKNLEVDAIVQEEVCLSEIFCDKDVPNTSSSQDAQLLVFPNIDSANIALEMAKSVTNGLHIGTLLLGAA 744 (779)
Q Consensus 665 vr~A~eil~~~~pd~~VDGemq~D~AL~~~ia~~K~p~S~laG~ANVLIfPnLeAaNI~yKllq~lgga~aiGPIL~G~~ 744 (779)
..-|++.+++++.++.++||+..|+++.+..+. |-.....++-|+.|.===|-|=|-.|++-+- .+.. +-+|+
T Consensus 221 I~PaI~~l~~~~~gi~i~GP~paDt~F~~a~~~--ff~~~~~~~~D~vlaMYHDQglip~K~l~f~-~~Vn---~TlGL- 293 (332)
T PRK02746 221 LIPWLESWRQKNPDIQLLGPIPPDTCWLSAAQA--WYGKGVAEAPDGYLALYHDQGLIPVKLLAFD-YAVN---TTIGL- 293 (332)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHH--HCCCCCCCCCCEEEEECCCCCCHHHEECCCC-CCEE---EECCC-
T ss_conf 399999999757998586276813665555442--2051213568989984435455223013567-6379---94599-
Q ss_pred CCEEECCCC-CCHHHHH
Q ss_conf 987987876-3898899
Q gi|254780137|r 745 LPVHIVPSS-VSVREII 760 (779)
Q Consensus 745 kPV~ilsr~-~Sv~dIv 760 (779)
|+.-+|.. -|.-||.
T Consensus 294 -p~iRtS~dHGTA~dia 309 (332)
T PRK02746 294 -PFIRTSPDHGTAFDIA 309 (332)
T ss_pred -CEEEECCCCCCHHHHH
T ss_conf -9126789987066660
No 40
>COG4002 Predicted phosphotransacetylase [General function prediction only]
Probab=98.71 E-value=1.2e-07 Score=71.69 Aligned_cols=183 Identities=16% Similarity=0.095 Sum_probs=125.2
Q ss_pred HHCCCCCEEECCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCC-CEEEEECCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 8657210010044677740467777763068766850121001355777-349997473688989889999999999999
Q gi|254780137|r 559 LKRGEGDGMICMCDSESGYNSHLTDIHKIIGMGLGISHYSAMSMCIVRD-NFLFFTDTHVSAEPSAMEIADSTILASQAI 637 (779)
Q Consensus 559 V~~G~AD~lI~G~~~t~~y~~~lr~~~~vIG~~~g~~~vs~~~il~~~~-~~lFiaDtaVNi~PtaEqLAdIa~~aa~~a 637 (779)
+..|+.|+-+-|....+ .++....+-+|++ ...-.+++..+. +++|++-.+|...-+.+.+..|++.++++.
T Consensus 59 Lv~g~~daaVRGslsas---~v~~eLkealgm~----~~~Ras~le~~~~~~flLaPVGIDEg~ti~dk~ri~~laaefl 131 (256)
T COG4002 59 LVDGEIDAAVRGSLSAS---KVILELKEALGMK----FYCRASILENPFTNGFLLAPVGIDEGKTIKDKIRIIELAAEFL 131 (256)
T ss_pred HHCCCHHHHHHCCCCHH---HHHHHHHHHCCCC----CEEEEEEEECCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 97450367774454322---5899999853887----3132101245886734874311488841777789999999999
Q ss_pred HHCCCCCCEEEEEECCCCC-CCCCCHHHH----HHHHHHHHHHCCCCEEECCCCHHHHCCHHHHHHCCCCCCCCCCCCEE
Q ss_conf 9818997299997025578-889778999----99999998737995998673046532989896308998777777778
Q gi|254780137|r 638 CSLGMRPKVSVLFHSNSGS-HCIKSSLKM----RDSFEKICELSKNLEVDAIVQEEVCLSEIFCDKDVPNTSSSQDAQLL 712 (779)
Q Consensus 638 r~lGiePkVAlLS~SnfGs-~~~~s~~kv----r~A~eil~~~~pd~~VDGemq~D~AL~~~ia~~K~p~S~laG~ANVL 712 (779)
|+.|+||+||+||---.|. ...+..++- ...++.++.+..+.+-.|-+- ++. ++ +-|+.
T Consensus 132 rr~~~ep~VaVlSgGRlgDlGR~~~VDrtladgEfva~~~k~~g~~v~H~~ILI------Eea---------lk-dgnvI 195 (256)
T COG4002 132 RRTGIEPKVAVLSGGRLGDLGRNKEVDRTLADGEFVAEHFKGNGVDVIHYGILI------EEA---------LK-DGNVI 195 (256)
T ss_pred HHHCCCCCEEEECCCCCHHCCCCCHHHHHHHCHHHHHHHHHCCCCEEEEEEEEH------HHH---------HH-CCCEE
T ss_conf 970989616995077300025762120243232999998741682268966677------878---------61-48889
Q ss_pred ECCCHHHHHHHHHHHHHHCCCEEECHH-HCCCCCCEEECCCCCCHHHHHHHHH
Q ss_conf 818912888999999986598687144-3145898798787638988999999
Q gi|254780137|r 713 VFPNIDSANIALEMAKSVTNGLHIGTL-LLGAALPVHIVPSSVSVREIIDMVA 764 (779)
Q Consensus 713 IfPnLeAaNI~yKllq~lgga~aiGPI-L~G~~kPV~ilsr~~Sv~dIvn~aA 764 (779)
|+||=-+||..+..+..+++...+|.. +++...-..++||........+-.-
T Consensus 196 ia~dGItGNLiFR~l~lvgg~~g~GAp~al~~d~vFVDTSR~q~a~~yarAlk 248 (256)
T COG4002 196 IAVDGITGNLIFRCLGLVGGIRGYGAPIALDKDVVFVDTSRNQNAEGYARALK 248 (256)
T ss_pred EEECCCCCHHHHHHHHHHCCCCCCCCCEEECCCCEEEECHHHHHHHHHHHHHH
T ss_conf 97567543045556777536677788347448818986604554899999999
No 41
>PRK04607 consensus
Probab=98.67 E-value=3.2e-06 Score=61.91 Aligned_cols=277 Identities=13% Similarity=0.114 Sum_probs=156.6
Q ss_pred CCCEEEEECCCC----CHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHH
Q ss_conf 894699824774----0467999999852750899955989999999984987665468423062025567899999999
Q gi|254780137|r 456 DSKRILFSAGED----ERVLRATQILIKENIARPVLIGSLLTIQDNIRRHDLQIIATKDFDVIDLNNKQSLKDYVDSYRS 531 (779)
Q Consensus 456 ~pKRIVfaEgeD----~rVLrAA~~~~eeGia~PILVG~~e~I~~~~~~~gL~l~~~~dieIidp~~~~~~~~ya~~l~~ 531 (779)
+-|||++.-||= +.++- ..+.+....+++++|+++.+++.++.+++++.. .+++..++..............+
T Consensus 4 ~~k~IaIT~GDPaGIGpEIil--k~~~~~~~~~~viigd~~~l~~~~~~lg~~~~~-~~~~~~~~~~~~~~~~l~v~~~~ 80 (330)
T PRK04607 4 SIKRIVVTAGEPAGIGPDLVL--ALSKEDWPHQLVVCADKQLLAERAAQLGIQVQL-LDYNADLAPQAQQAGTLLVEHIE 80 (330)
T ss_pred CCCCEEEECCCCCHHHHHHHH--HHHHHCCCCCEEEEECHHHHHHHHHHCCCCCEE-EECCCCCCCCCCCCCEEEEECCC
T ss_conf 899489955887621799999--985135888879998999999999984999457-55586655662448845884356
Q ss_pred H--HHHCCCCHHHHHHHHHHCHHHHHHHHHHCCCCCEEECCCCCCC-------CHHHHHHHHHHCCCCCCCCCEEEEECC
Q ss_conf 8--7637999899999986253567899986572100100446777-------404677777630687668501210013
Q gi|254780137|r 532 L--SAEKGISLDSIYDLLRSNTTLLGSLALKRGEGDGMICMCDSES-------GYNSHLTDIHKIIGMGLGISHYSAMSM 602 (779)
Q Consensus 532 ~--~~RKG~~~~~A~~~vr~d~~~faa~MV~~G~AD~lI~G~~~t~-------~y~~~lr~~~~vIG~~~g~~~vs~~~i 602 (779)
. -..-|..-..+-+... +..-.|..++..|++|+|+++-++.. .|+.|.+..-+..+ ... .++|
T Consensus 81 ~~~~~~~G~~s~~~g~~~~-~sl~~Av~~~~~g~~dalVT~PInK~~i~~ag~~f~GHTE~LA~~~~----~~~--~~Mm 153 (330)
T PRK04607 81 LAEPVVAGQLNEANGHYVL-KTLERAALGCMNGEFDAIVTGPVHKGVINRAGVAFSGHTEFFAEQSN----TPL--VVMM 153 (330)
T ss_pred CCCCCCCCCCCHHHHHHHH-HHHHHHHHHHHCCCCCEEEECCCCHHHHHHCCCCCCCCHHHHHHHHC----CCC--EEEE
T ss_conf 6787788973989999999-99999999997298788997731499998579999981789875414----664--5554
Q ss_pred CCCCC-CEEEEECCCCCC-----CCCHHHHHHHHHHHHH-HHHHCCCC-CCEEEEEE----CCCCCCCCCCHHHHHHHHH
Q ss_conf 55777-349997473688-----9898899999999999-99981899-72999970----2557888977899999999
Q gi|254780137|r 603 CIVRD-NFLFFTDTHVSA-----EPSAMEIADSTILASQ-AICSLGMR-PKVSVLFH----SNSGSHCIKSSLKMRDSFE 670 (779)
Q Consensus 603 l~~~~-~~lFiaDtaVNi-----~PtaEqLAdIa~~aa~-~ar~lGie-PkVAlLS~----SnfGs~~~~s~~kvr~A~e 670 (779)
+..++ ++.+ .-++|-. .-|.+-+.+.+....+ +.+.||++ ||+|++.. .+.|.--.|.-..+.-|.+
T Consensus 154 l~~~~LrV~l-vTtHipLk~V~~~it~~~I~~~i~~~~~~l~~~fgi~~PrIaV~GLNPHAGE~G~~G~EE~~iI~PaI~ 232 (330)
T PRK04607 154 LATEGLRVAL-VTTHIPLAYVSKAVTEERLEQIIDILHKDLVEKFAIAEPKIYVCGLNPHAGEDGCLGREEIETITPTLE 232 (330)
T ss_pred ECCCCEEEEE-ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 3079708999-614687999999980999999999999999986288898189995088765567776443878999999
Q ss_pred HHHHHCCCCEEECCCCHHHHCCHHHHHHCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCEEECHHHCCCCCCEEEC
Q ss_conf 99873799599867304653298989630899877777777881891288899999998659868714431458987987
Q gi|254780137|r 671 KICELSKNLEVDAIVQEEVCLSEIFCDKDVPNTSSSQDAQLLVFPNIDSANIALEMAKSVTNGLHIGTLLLGAALPVHIV 750 (779)
Q Consensus 671 il~~~~pd~~VDGemq~D~AL~~~ia~~K~p~S~laG~ANVLIfPnLeAaNI~yKllq~lgga~aiGPIL~G~~kPV~il 750 (779)
.++++ .++.++||+.+|.++.+..+ |+-|+.|.-==|-|=|-.|++-+-.+.. +.+|+ |+.-+
T Consensus 233 ~l~~~-~gi~v~GP~paDt~F~~~~~----------~~~D~vlamYHDQglip~K~~~f~~~Vn----~TlGL--P~iRt 295 (330)
T PRK04607 233 KLRQE-KGMNLVGPLPADTIFNEKYL----------NDADAVLGMYHDQVLPVLKYKGFGRSVN----ITLGL--PFIRT 295 (330)
T ss_pred HHHHH-CCCCCCCCCCCHHHHHHHCC----------CCCCEEEECCCCCCHHHHHHCCCCCCEE----EECCC--CEEEE
T ss_conf 98875-59676899681777654203----------5899999835144217666425676379----95489--92477
Q ss_pred CCCC-CHHHHH
Q ss_conf 8763-898899
Q gi|254780137|r 751 PSSV-SVREII 760 (779)
Q Consensus 751 sr~~-Sv~dIv 760 (779)
|..- |.-||.
T Consensus 296 S~dHGTa~dIa 306 (330)
T PRK04607 296 SVDHGTALELA 306 (330)
T ss_pred CCCCCCHHHHH
T ss_conf 89987046661
No 42
>PRK03367 consensus
Probab=98.51 E-value=7.3e-06 Score=59.46 Aligned_cols=272 Identities=10% Similarity=0.080 Sum_probs=159.3
Q ss_pred CCEEEEECCCC----CH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHH-----HHH
Q ss_conf 94699824774----04-679999998527508999559899999999849876654684230620255678-----999
Q gi|254780137|r 457 SKRILFSAGED----ER-VLRATQILIKENIARPVLIGSLLTIQDNIRRHDLQIIATKDFDVIDLNNKQSLK-----DYV 526 (779)
Q Consensus 457 pKRIVfaEgeD----~r-VLrAA~~~~eeGia~PILVG~~e~I~~~~~~~gL~l~~~~dieIidp~~~~~~~-----~ya 526 (779)
.|||++.-||= +. +++++ .+..-.++|++|++..++..++.++++++. ..+++.+..... ...
T Consensus 4 ~~~IaIT~GDPaGIGPEIi~kl~---~~~~~~~~iv~gd~~~l~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~l~i~ 76 (329)
T PRK03367 4 NQRVVITPGEPAGIGPDLVVQLA---QREWPVELVVCADPALLTDRAAMLGLPLTL----RPYSPDQPAQPQTAGTLTLL 76 (329)
T ss_pred CCCEEEECCCCCHHHHHHHHHHH---HCCCCCCEEEEECHHHHHHHHHHCCCCCEE----EECCCCCCCCCCCCCEEEEE
T ss_conf 99789987887531899999997---006898889997899999999975999458----87388765664658834786
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHCCCCCEEECCCCCCC-------CHHHHHHHHHHCCCCCCCCCEEEE
Q ss_conf 9999987637999899999986253567899986572100100446777-------404677777630687668501210
Q gi|254780137|r 527 DSYRSLSAEKGISLDSIYDLLRSNTTLLGSLALKRGEGDGMICMCDSES-------GYNSHLTDIHKIIGMGLGISHYSA 599 (779)
Q Consensus 527 ~~l~~~~~RKG~~~~~A~~~vr~d~~~faa~MV~~G~AD~lI~G~~~t~-------~y~~~lr~~~~vIG~~~g~~~vs~ 599 (779)
..-...--..|.....+-+... +..-.|.-++..|++|+++++-++.. .|+.|....-+.-+ ...+
T Consensus 77 ~~~~~~~~~~G~~s~~~g~~~~-~~l~~Av~~~~~g~~~alVTaPInK~~i~~aG~~f~GHTE~La~~~~----~~~~-- 149 (329)
T PRK03367 77 PVALRAPVTPGQLAVENGHYVV-ETLARACDGCLNGEFAALITGPVHKGVINDAGIPFTGHTEFFEERSQ----AKKV-- 149 (329)
T ss_pred CCCCCCCCCCCCCCHHHHHHHH-HHHHHHHHHHHCCCCCEEEECCCCHHHHHHCCCCCCCHHHHHHHHHC----CCCE--
T ss_conf 1676778888972889999999-99999999998298789997741589998689998983999999868----9965--
Q ss_pred ECCCCCCC-CEEEEEC----CCCCCCCCHHHHHHHHHHHHHHHH-HCCCC-CCEEEEEE----CCCCCCCCCCHHHHHHH
Q ss_conf 01355777-3499974----736889898899999999999999-81899-72999970----25578889778999999
Q gi|254780137|r 600 MSMCIVRD-NFLFFTD----THVSAEPSAMEIADSTILASQAIC-SLGMR-PKVSVLFH----SNSGSHCIKSSLKMRDS 668 (779)
Q Consensus 600 ~~il~~~~-~~lFiaD----taVNi~PtaEqLAdIa~~aa~~ar-~lGie-PkVAlLS~----SnfGs~~~~s~~kvr~A 668 (779)
++|+..++ ++.++|. .-|-..-|.+.+.+.+....+..+ .||++ ||+|++.. .+-|.--.|......-|
T Consensus 150 ~Mml~~~~LrV~lvTtHipLk~V~~~It~~~I~~~i~~~~~~l~~~~gi~~PrIaV~GLNPHAGE~G~~G~EE~~iI~Pa 229 (329)
T PRK03367 150 VMMLATEELRVALATTHLPLRAIADAITPALLHEVIAILHHDLRTKFGIAEPRILVCGLNPHAGEGGHMGTEEIDTIIPV 229 (329)
T ss_pred EEEEECCCCEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHH
T ss_conf 76663587489985036328998863899999999999999999835988985999950898765677773558889999
Q ss_pred HHHHHHHCCCCEEECCCCHHHHCCHHHHHHCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCEEECHHHCCCCCCEE
Q ss_conf 99998737995998673046532989896308998777777778818912888999999986598687144314589879
Q gi|254780137|r 669 FEKICELSKNLEVDAIVQEEVCLSEIFCDKDVPNTSSSQDAQLLVFPNIDSANIALEMAKSVTNGLHIGTLLLGAALPVH 748 (779)
Q Consensus 669 ~eil~~~~pd~~VDGemq~D~AL~~~ia~~K~p~S~laG~ANVLIfPnLeAaNI~yKllq~lgga~aiGPIL~G~~kPV~ 748 (779)
.+.++++ ++.++||+..|.++.+..+ ++-|+.+.===|-|=|..|++-+-.+.. +-+|+ |+.
T Consensus 230 I~~l~~~--gi~~~GP~paDt~F~~~~~----------~~~D~vlamYHDQglip~K~~~f~~~Vn----vtlGL--p~i 291 (329)
T PRK03367 230 LDELRAQ--GMNLNGPLPADTLFQPKYL----------DHADAVLAMYHDQGLPVLKYQGFGRGVN----ITLGL--PFI 291 (329)
T ss_pred HHHHHHC--CCCCCCCCCCHHHHHHHHC----------CCCCEEEEECCCCCHHHHHHCCCCCCEE----EECCC--CEE
T ss_conf 9999976--9987899683578788645----------7899999825145206665304676179----96389--924
Q ss_pred ECCCCC-CHHHHH
Q ss_conf 878763-898899
Q gi|254780137|r 749 IVPSSV-SVREII 760 (779)
Q Consensus 749 ilsr~~-Sv~dIv 760 (779)
-+|..- |.-||.
T Consensus 292 RtS~dHGTa~dia 304 (329)
T PRK03367 292 RTSVDHGTALELA 304 (329)
T ss_pred EECCCCCCHHHHH
T ss_conf 7789987056662
No 43
>PRK04507 consensus
Probab=98.51 E-value=3.1e-06 Score=62.08 Aligned_cols=267 Identities=12% Similarity=0.098 Sum_probs=156.8
Q ss_pred CEEEEECCCC-----CHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHH-H-HHH-H
Q ss_conf 4699824774-----046799999985275089995598999999998498766546842306202556789-9-999-9
Q gi|254780137|r 458 KRILFSAGED-----ERVLRATQILIKENIARPVLIGSLLTIQDNIRRHDLQIIATKDFDVIDLNNKQSLKD-Y-VDS-Y 529 (779)
Q Consensus 458 KRIVfaEgeD-----~rVLrAA~~~~eeGia~PILVG~~e~I~~~~~~~gL~l~~~~dieIidp~~~~~~~~-y-a~~-l 529 (779)
++|++.-||= |-++|+.... ...++|+++|+++.++..++.+++++. +++++...+... . ... -
T Consensus 4 P~IaIT~GDPaGIGPEIilK~~~~~--~~~~~~vvigd~~~l~~~~~~l~~~~~------~~~~~~~~~~~~~l~~~~~~ 75 (323)
T PRK04507 4 PSLALVPGEPAGIGPELCVRLAQQP--RSDAHLIAYADPDTLHSAAKALSLPVR------LLDPDQPARAPGDLPLHPVR 75 (323)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHCC--CCCCCEEEEECHHHHHHHHHHCCCCEE------ECCCCCHHHCCCCCEEEECC
T ss_conf 8389915886266999999998666--458998999899999999986699817------62732043268972252134
Q ss_pred HHHHHHCCC-CHHHHHHHHHHCHHHHHHHHHHCCCCCEEECCCCCCC-------CHHHHHHHHHHCCCCCCCCCEEEEEC
Q ss_conf 998763799-9899999986253567899986572100100446777-------40467777763068766850121001
Q gi|254780137|r 530 RSLSAEKGI-SLDSIYDLLRSNTTLLGSLALKRGEGDGMICMCDSES-------GYNSHLTDIHKIIGMGLGISHYSAMS 601 (779)
Q Consensus 530 ~~~~~RKG~-~~~~A~~~vr~d~~~faa~MV~~G~AD~lI~G~~~t~-------~y~~~lr~~~~vIG~~~g~~~vs~~~ 601 (779)
+..-.+-|. +...+...+ +..-.|+-++..|++|++|++-++.. .|+.|.+..-+. .|.. .+.
T Consensus 76 ~~~~~~~G~~~~~~g~~~~--~~l~~Av~~~~~g~~~aiVTaPInK~~l~~aG~~f~GHTE~La~~----~~~~---~~M 146 (323)
T PRK04507 76 QAVPTRFGAPDPANAAAVI--AGLRGAAGDCLHGRLQGIVTGPVHKAVINAGGIAYTGTTELLAAQ----AGCP---VVM 146 (323)
T ss_pred CCCCCCCCCCCHHHHHHHH--HHHHHHHHHHHCCCCCEEEECCCCHHHHHHCCCCCCCHHHHHHHH----HCCC---EEE
T ss_conf 5576768986878999999--999999999975997799977536999985799989726999887----3882---688
Q ss_pred CCCCCC-CEEEEECCCC-----CCCCCHHHHHHHHHHHHHHHH-HCCCC-CCEEEEEE----CCCCCCCCCCHHHHHHHH
Q ss_conf 355777-3499974736-----889898899999999999999-81899-72999970----255788897789999999
Q gi|254780137|r 602 MCIVRD-NFLFFTDTHV-----SAEPSAMEIADSTILASQAIC-SLGMR-PKVSVLFH----SNSGSHCIKSSLKMRDSF 669 (779)
Q Consensus 602 il~~~~-~~lFiaDtaV-----Ni~PtaEqLAdIa~~aa~~ar-~lGie-PkVAlLS~----SnfGs~~~~s~~kvr~A~ 669 (779)
||..++ ++.+ .-+++ -..-|.|-+.+-+....+..+ .||++ ||+|++.. .+.|.--.|...-+.-|+
T Consensus 147 ml~~~~LrV~l-~TtHIpLk~V~~~It~e~I~~~i~l~~~~l~~~fgi~~PrIaV~gLNPHAGE~G~~G~EE~~iI~Pai 225 (323)
T PRK04507 147 MLANSIVRVAL-VTTHLPLRAVPDAITADALERCLRITHTAMQRDFGLEHPRIAVLGLNPHAGEDGLLGREELDVVIPVL 225 (323)
T ss_pred EEECCCCEEEE-ECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 88527747998-41347799999871999999999999999999639989958996048876666766502232327899
Q ss_pred HHHHHHCCCCEEECCCCHHHHCCHHHHHHCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCEEECHHHCCCCCCEEE
Q ss_conf 99987379959986730465329898963089987777777788189128889999999865986871443145898798
Q gi|254780137|r 670 EKICELSKNLEVDAIVQEEVCLSEIFCDKDVPNTSSSQDAQLLVFPNIDSANIALEMAKSVTNGLHIGTLLLGAALPVHI 749 (779)
Q Consensus 670 eil~~~~pd~~VDGemq~D~AL~~~ia~~K~p~S~laG~ANVLIfPnLeAaNI~yKllq~lgga~aiGPIL~G~~kPV~i 749 (779)
+.++++ ++.++||+.+|.++.+..+ ++-|+.+.===|-|=|-.|++-+-.+.. +-+|+ |+.-
T Consensus 226 ~~~~~~--g~~~~GP~paDt~F~~~~~----------~~~D~vlamYHDQglip~K~l~f~~~Vn----~tlGL--P~ir 287 (323)
T PRK04507 226 EQLRGE--GMQLIGPLPADTAFLPQKL----------IGFDAVVAMYHDQGLPVLKYSGFEQAVN----ITLGL--PYPR 287 (323)
T ss_pred HHHHHC--CCCCCCCCCCHHHHHHHHC----------CCCCEEEECCCCCCHHHHHHCCCCCCEE----EECCC--CEEE
T ss_conf 999963--9887899680778766424----------6989999826145448787504787279----94389--9027
Q ss_pred CCCCC-CHHHHH
Q ss_conf 78763-898899
Q gi|254780137|r 750 VPSSV-SVREII 760 (779)
Q Consensus 750 lsr~~-Sv~dIv 760 (779)
+|..- |.-||.
T Consensus 288 tS~dHGta~dia 299 (323)
T PRK04507 288 VAVDHGTALELA 299 (323)
T ss_pred ECCCCCCHHHHH
T ss_conf 789987156660
No 44
>PRK03371 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 2; Provisional
Probab=98.30 E-value=6.7e-05 Score=52.85 Aligned_cols=274 Identities=15% Similarity=0.144 Sum_probs=153.8
Q ss_pred CCEEEEECCCC-----CHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHH----HH
Q ss_conf 94699824774-----0467999999852750899955989999999984987665468423062025567899----99
Q gi|254780137|r 457 SKRILFSAGED-----ERVLRATQILIKENIARPVLIGSLLTIQDNIRRHDLQIIATKDFDVIDLNNKQSLKDY----VD 527 (779)
Q Consensus 457 pKRIVfaEgeD-----~rVLrAA~~~~eeGia~PILVG~~e~I~~~~~~~gL~l~~~~dieIidp~~~~~~~~y----a~ 527 (779)
.|+|++.-||= |-++||-..-. ..-..++++|+...++..... ++.. ...++.++...+.++..- .+
T Consensus 2 ~K~IaIT~GDPaGIGpEIilKal~~~~-~~~~~~ivig~~~~l~~~~~~-~~~~--~~~~~~i~~~~~~~~~~~~l~i~d 77 (326)
T PRK03371 2 TKTVAITMGDPAGIGPEIIVKALSEDG-LNGAPLVVIGCLATLKRLQAK-GITP--NVELRAIERVAEARFAPGIIHVID 77 (326)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHCCC-CCCCCEEEEECHHHHHHHHHH-CCCC--CCEEEECCCHHHHCCCCCEEEEEE
T ss_conf 986999457852639999999985744-038998999789999999984-7998--820464598767125898678983
Q ss_pred -HHHH-HHHHCCCCHHHHHHHHHHCHHHHHHHHHHCCCCCEEECCCCCCC-------CHHHHHHHHHHCCCCCCCCCEEE
Q ss_conf -9999-87637999899999986253567899986572100100446777-------40467777763068766850121
Q gi|254780137|r 528 -SYRS-LSAEKGISLDSIYDLLRSNTTLLGSLALKRGEGDGMICMCDSES-------GYNSHLTDIHKIIGMGLGISHYS 598 (779)
Q Consensus 528 -~l~~-~~~RKG~~~~~A~~~vr~d~~~faa~MV~~G~AD~lI~G~~~t~-------~y~~~lr~~~~vIG~~~g~~~vs 598 (779)
.+.. ..-.-|.....+-+... +..-.|.-++..|++|+||++-++.. .|+.|.+..-+.-+. ..+
T Consensus 78 ~~~~~~~~~~~G~~~~~~g~~a~-~sl~~Av~~~~~g~~~alVT~PInK~~i~~aG~~f~GHTE~La~~~~~----~~~- 151 (326)
T PRK03371 78 EPLAQPEALEAGKVQAQAGDLAY-RCVKRATELALRGDVQAIATAPLNKEALHLAGHNYPGHTELLATLTHS----RDY- 151 (326)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHH-HHHHHHHHHHHCCCCCEEEECCCCHHHHHHCCCCCCCHHHHHHHHHCC----CCH-
T ss_conf 67777455778982889999999-999999999974985779967857788986799999869999887447----863-
Q ss_pred EECCCCCCCCEEEEECCCCCC-----CCCHHHHHHHHHHHHHHHHHCCCC-CCEEEEEE----CCCCCCCCCCHHHHHHH
Q ss_conf 001355777349997473688-----989889999999999999981899-72999970----25578889778999999
Q gi|254780137|r 599 AMSMCIVRDNFLFFTDTHVSA-----EPSAMEIADSTILASQAICSLGMR-PKVSVLFH----SNSGSHCIKSSLKMRDS 668 (779)
Q Consensus 599 ~~~il~~~~~~lFiaDtaVNi-----~PtaEqLAdIa~~aa~~ar~lGie-PkVAlLS~----SnfGs~~~~s~~kvr~A 668 (779)
.| ||..++=-+...=++|-. .-|.+.+.+.....-...+.||++ ||+|++.. .+-|.--.|....+.-|
T Consensus 152 ~M-ml~~~~LrV~lvTtHipLk~V~~~It~~~I~~~i~l~~~~lk~~gi~~PrIaV~GLNPHAGE~G~~G~EE~~iI~Pa 230 (326)
T PRK03371 152 AM-VLYTDKLKVIHVSTHIALRKFLDTLSTARVETVIGIADTFLKRVGYVKPRIAVAGVNPHAGENGLFGDEETRILTPA 230 (326)
T ss_pred HH-HHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHH
T ss_conf 77-73168747998368876999999984999999999999999982898870799951898766677751055625999
Q ss_pred HHHHHHHCCCCEEECCCCHHHHCCHHHHHHCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCEEECHHHCCCCCCEE
Q ss_conf 99998737995998673046532989896308998777777778818912888999999986598687144314589879
Q gi|254780137|r 669 FEKICELSKNLEVDAIVQEEVCLSEIFCDKDVPNTSSSQDAQLLVFPNIDSANIALEMAKSVTNGLHIGTLLLGAALPVH 748 (779)
Q Consensus 669 ~eil~~~~pd~~VDGemq~D~AL~~~ia~~K~p~S~laG~ANVLIfPnLeAaNI~yKllq~lgga~aiGPIL~G~~kPV~ 748 (779)
++.++++ ++.++||+..|.++.+..+ ++-|+.|.===|-|=|-.|++-.-.+... -+|+ |+.
T Consensus 231 I~~l~~~--gi~v~GP~paDt~F~~~~~----------~~~D~vlaMYHDQglip~K~~~f~~~Vn~----TlGL--p~i 292 (326)
T PRK03371 231 ITDARAK--GMDVYGPCPPDTVFLQAYE----------GQYDMVVAMYHDQGHIPLKLLGFYDGVNI----TAGL--PFI 292 (326)
T ss_pred HHHHHHC--CCEEECCCCHHHHHHHHHC----------CCCCEEEEECCCCCCHHHHHCCCCCCEEE----ECCC--CEE
T ss_conf 9999978--9879899881889887435----------68999998052453165642257873799----4699--914
Q ss_pred ECCCCC-CHHHH
Q ss_conf 878763-89889
Q gi|254780137|r 749 IVPSSV-SVREI 759 (779)
Q Consensus 749 ilsr~~-Sv~dI 759 (779)
-+|..- |.-||
T Consensus 293 RtSpdHGTa~di 304 (326)
T PRK03371 293 RTSADHGTAFDI 304 (326)
T ss_pred EECCCCCCHHHH
T ss_conf 778998705666
No 45
>PRK03946 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=98.25 E-value=0.00042 Score=47.31 Aligned_cols=256 Identities=13% Similarity=0.071 Sum_probs=146.0
Q ss_pred CCEEEEECCCC-----CHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHH
Q ss_conf 94699824774-----0467999999852750899955989999999984987665468423062025567899999999
Q gi|254780137|r 457 SKRILFSAGED-----ERVLRATQILIKENIARPVLIGSLLTIQDNIRRHDLQIIATKDFDVIDLNNKQSLKDYVDSYRS 531 (779)
Q Consensus 457 pKRIVfaEgeD-----~rVLrAA~~~~eeGia~PILVG~~e~I~~~~~~~gL~l~~~~dieIidp~~~~~~~~ya~~l~~ 531 (779)
+|||++.-||= |-+++|.....+ ++.|+++|+++.+++..+.+++.+. .++++.+...+...
T Consensus 1 Kp~IaIT~GDPaGIGPEIilKa~~~~~~--~~~pii~~~~~~l~~~~~~l~~~~~--~~~~~~~~~~~~~~--------- 67 (304)
T PRK03946 1 KKKIAISIGDINGIGLEIALKSHEEVSK--ICEPLYFIDEELLNQASQLLNLKIP--NDFEIDEPGLLFEI--------- 67 (304)
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHHHHH--HCCEEEEECHHHHHHHHHHCCCCCC--CCCEECCCCCCCCC---------
T ss_conf 9918994888634399999998287686--2991999889999999998499996--44213256644568---------
Q ss_pred HHHHCCCCHHHHHHHHHHCHHHHHHHHHHCCCCCEEECCCCCCC-------CHHHHHHHHHHCCCCCCCCCEEEEECCCC
Q ss_conf 87637999899999986253567899986572100100446777-------40467777763068766850121001355
Q gi|254780137|r 532 LSAEKGISLDSIYDLLRSNTTLLGSLALKRGEGDGMICMCDSES-------GYNSHLTDIHKIIGMGLGISHYSAMSMCI 604 (779)
Q Consensus 532 ~~~RKG~~~~~A~~~vr~d~~~faa~MV~~G~AD~lI~G~~~t~-------~y~~~lr~~~~vIG~~~g~~~vs~~~il~ 604 (779)
.-|..-..+-+..- +..-.|.-+++.|++|++|++-++.. .|+.|.+..-+..+. . .++||.
T Consensus 68 ---~~G~~~~~~g~~~~-~~l~~Ai~~~~~g~~~aiVT~PInK~~i~~aG~~f~GHTE~La~~~~~----~---~~Mml~ 136 (304)
T PRK03946 68 ---KPGKVSAKSGAYSF-ESFKKAVELADSKEVDAICTLPIHKKAWQKAGIPYVGHTDALRDRFKK----N---AIMMLG 136 (304)
T ss_pred ---CCCCCCHHHHHHHH-HHHHHHHHHHHCCCCCEEEECCCCHHHHHHCCCCCCCHHHHHHHHHHC----C---CEEEEC
T ss_conf ---89982889999999-999999999983998799967546999985899989816999998602----4---323111
Q ss_pred CCCCEEEEECCCCCCC-----CCHHHHHHHHHHHHHHHHHC--CC-CCCEEEEEE----CCCCCCCCCCHHHHHHHHHHH
Q ss_conf 7773499974736889-----89889999999999999981--89-972999970----255788897789999999999
Q gi|254780137|r 605 VRDNFLFFTDTHVSAE-----PSAMEIADSTILASQAICSL--GM-RPKVSVLFH----SNSGSHCIKSSLKMRDSFEKI 672 (779)
Q Consensus 605 ~~~~~lFiaDtaVNi~-----PtaEqLAdIa~~aa~~ar~l--Gi-ePkVAlLS~----SnfGs~~~~s~~kvr~A~eil 672 (779)
.++=-+...-++|-.. -|.|.+.+ ..+.| .+ .||+|++.. .+.|.--.|.- ++-.++...
T Consensus 137 ~~~L~v~~~TtHipLk~V~~~it~~~i~~-------~i~~~~~~~~~prIaV~GLNPHAGE~G~~G~EE~-~Ii~~i~~~ 208 (304)
T PRK03946 137 CEKLFVALFTDHIPLKKVSQLITVKALVK-------FLLDFYKSTQFKKVGVLGFNPHAGDEGVLGEEEK-IILKAIKKA 208 (304)
T ss_pred CCCEEEEEECCCCCHHHHHHHHCHHHHHH-------HHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHH-HHHHHHHHH
T ss_conf 68638998568875999999868999999-------9999985357884599941776300056774134-769999999
Q ss_pred HHHCCCCEEECCCCHHHHCCHHHHHHCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCEEECHHHCCCCCCEEECCC
Q ss_conf 87379959986730465329898963089987777777788189128889999999865986871443145898798787
Q gi|254780137|r 673 CELSKNLEVDAIVQEEVCLSEIFCDKDVPNTSSSQDAQLLVFPNIDSANIALEMAKSVTNGLHIGTLLLGAALPVHIVPS 752 (779)
Q Consensus 673 ~~~~pd~~VDGemq~D~AL~~~ia~~K~p~S~laG~ANVLIfPnLeAaNI~yKllq~lgga~aiGPIL~G~~kPV~ilsr 752 (779)
.+....-.++||+..|+++.+..+ ++-|+.|.-==|-|=|-.|++-.-.+.. +-+|+ |+.-+|.
T Consensus 209 ~~~~~~~~~~GP~paDt~F~~~~~----------~~~D~vvaMYHDQglip~K~l~f~~~vn----~TlGL--p~iRtSp 272 (304)
T PRK03946 209 NQFLGFEIFFGPLVPDSAFTPNKR----------KNFNRYVAMYHDQGLAPLKALYFDESIN----VSLNL--PILRTSV 272 (304)
T ss_pred HHHCCCCCCCCCCCHHHHHHHHHH----------CCCCEEEEECCCCCCHHHHHCCCCCCEE----EECCC--CEEEECC
T ss_conf 996698713389882688887541----------5799999815244326565224787279----95289--9036789
Q ss_pred CC-CHHHHH
Q ss_conf 63-898899
Q gi|254780137|r 753 SV-SVREII 760 (779)
Q Consensus 753 ~~-Sv~dIv 760 (779)
.- |.-||.
T Consensus 273 dHGTa~dIa 281 (304)
T PRK03946 273 DHGTAFDIA 281 (304)
T ss_pred CCCCHHHHH
T ss_conf 987056660
No 46
>COG1995 PdxA Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=98.02 E-value=0.0012 Score=44.15 Aligned_cols=262 Identities=13% Similarity=0.107 Sum_probs=149.7
Q ss_pred CEEEEECCC----CCHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHH-
Q ss_conf 469982477----4046799999985275-0899955989999999984987665468423062025567899999999-
Q gi|254780137|r 458 KRILFSAGE----DERVLRATQILIKENI-ARPVLIGSLLTIQDNIRRHDLQIIATKDFDVIDLNNKQSLKDYVDSYRS- 531 (779)
Q Consensus 458 KRIVfaEge----D~rVLrAA~~~~eeGi-a~PILVG~~e~I~~~~~~~gL~l~~~~dieIidp~~~~~~~~ya~~l~~- 531 (779)
+||+..-|| -+.+ .+....+.++ +.++++|++...++.++.+++..... ..+-+++.. .+.....+.-
T Consensus 4 ~~iAit~GDPaGIGPEi--~~~~~~~~~~~~~~v~igd~~lL~~~~~~l~~~~~~~--~~~~~~~~~--~~~~~~~l~~l 77 (332)
T COG1995 4 PRIAITMGDPAGIGPEL--VALALAELPIKCELVVIGDKALLEAAAALLGLPVFLL--EAIPDPYEA--FAAGAIDLPDL 77 (332)
T ss_pred CCEEECCCCCCCCCHHH--HHHHHCCCCCCCCEEEECCHHHHHHHHHHHCCCCCCH--HCCCCHHHH--HHCCCCCEEEC
T ss_conf 85686468866679999--9986210467787699858999999998746653110--014660445--42147622422
Q ss_pred -HHH----HCCC-CHHHHHHHHHHCHHHHHHHHHHCCCCCEEECCCCCCC-------CHHHHHHHHHHCCCCCCCCCEEE
Q ss_conf -876----3799-9899999986253567899986572100100446777-------40467777763068766850121
Q gi|254780137|r 532 -LSA----EKGI-SLDSIYDLLRSNTTLLGSLALKRGEGDGMICMCDSES-------GYNSHLTDIHKIIGMGLGISHYS 598 (779)
Q Consensus 532 -~~~----RKG~-~~~~A~~~vr~d~~~faa~MV~~G~AD~lI~G~~~t~-------~y~~~lr~~~~vIG~~~g~~~vs 598 (779)
+.. +-|- +........+ ..--|.-....|++|+++++-++.. .|..|.+..-+--+...
T Consensus 78 ~~~~~~~v~~G~~~~~~g~~~~~--~l~~A~~~a~~G~~~aivT~PI~K~~l~~AG~~y~GhTe~LA~~s~~~~------ 149 (332)
T COG1995 78 PLPLPAPVEAGQLSAANGAYVFE--TLKRAVELALAGEVDAIVTAPINKEALNDAGIPYPGHTEFLAELSGTHD------ 149 (332)
T ss_pred CCCCCCCCCCCCCCCCCHHHHHH--HHHHHHHHHHCCCCCEEEECCCCHHHHHHCCCCCCCHHHHHHHHHCCCC------
T ss_conf 45776765688757134089999--9999999873673467996564789999648998977899999857997------
Q ss_pred EECCCCCCCCEEEEECCCCCC-------CCCHHHHHHHHHHHHHHH-HHCCCC-CCEEEEEEC----CCCCCCCCCHHHH
Q ss_conf 001355777349997473688-------989889999999999999-981899-729999702----5578889778999
Q gi|254780137|r 599 AMSMCIVRDNFLFFTDTHVSA-------EPSAMEIADSTILASQAI-CSLGMR-PKVSVLFHS----NSGSHCIKSSLKM 665 (779)
Q Consensus 599 ~~~il~~~~~~lFiaDtaVNi-------~PtaEqLAdIa~~aa~~a-r~lGie-PkVAlLS~S----nfGs~~~~s~~kv 665 (779)
-+.|+..++ ++.+=.+.++ .-|.|.+-+......+.. ++||++ ||+|++-.. +-|.--.|..+-+
T Consensus 150 ~vMmla~~~--Lrv~lvTtHipL~~V~~~iT~e~l~~~~~i~~~~L~~~fGi~~PriaVaGLNPHaGE~G~lG~EE~diI 227 (332)
T COG1995 150 PVMMLAVPE--LRVALVTTHIPLKDVPDAITPELLLEVLRILDKDLRKKFGIAEPRIAVAGLNPHAGEGGLLGREEIDII 227 (332)
T ss_pred EEEEEECCC--CEEEEEEECCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCHHHHHH
T ss_conf 179861464--179987504618887766589999999999999999862988763688614898876777773477888
Q ss_pred HHHHHHHHHHCCCCEEECCCCHHHHCCHHHHHHCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCEEECHHHCCCCC
Q ss_conf 99999998737995998673046532989896308998777777778818912888999999986598687144314589
Q gi|254780137|r 666 RDSFEKICELSKNLEVDAIVQEEVCLSEIFCDKDVPNTSSSQDAQLLVFPNIDSANIALEMAKSVTNGLHIGTLLLGAAL 745 (779)
Q Consensus 666 r~A~eil~~~~pd~~VDGemq~D~AL~~~ia~~K~p~S~laG~ANVLIfPnLeAaNI~yKllq~lgga~aiGPIL~G~~k 745 (779)
.-|++.++++ .+.+.||+-.|+++-+..++. .|..+.=-=|-|-|..|++-+= +.+- |-+|+
T Consensus 228 ~Paie~aR~~--Gi~~~GPlpADT~F~~~~~~~----------~DavlaMYHDQgliplK~l~Fd---~~VN-vtlGL-- 289 (332)
T COG1995 228 IPAIEEARAE--GIDLVGPLPADTLFHPAYLAN----------YDAVLAMYHDQGLIPLKYLGFD---RGVN-VTLGL-- 289 (332)
T ss_pred HHHHHHHHHH--CCCCCCCCCCCHHHHHHHHCC----------CCEEEEEECCCCCHHHHHHCCC---CCEE-EECCC--
T ss_conf 9999999981--873348999414420345505----------7879996226643556442235---3257-73388--
Q ss_pred CEEECCCC
Q ss_conf 87987876
Q gi|254780137|r 746 PVHIVPSS 753 (779)
Q Consensus 746 PV~ilsr~ 753 (779)
|+..+|..
T Consensus 290 PfiRTS~D 297 (332)
T COG1995 290 PFIRTSVD 297 (332)
T ss_pred CEEEECCC
T ss_conf 70340687
No 47
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=97.97 E-value=0.00015 Score=50.41 Aligned_cols=230 Identities=17% Similarity=0.185 Sum_probs=142.5
Q ss_pred HHHHHHHHHCCCCEEEEECCCCEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCE--EEEECCCC----------CH----
Q ss_conf 899888751358479998178500254220510583001008999986269852--65423889----------88----
Q gi|254780137|r 68 DPSKAAMYTNRSNLVAVVSNGSAVLGLGDIGPLASKPVMEGKAVLFKKFAGINV--FDIEINAK----------DV---- 131 (779)
Q Consensus 68 ~~~~~~~~t~~~n~vaVvtdGt~vLGLGdiG~~a~~pvmeGK~~L~k~~agid~--~~i~~~~~----------d~---- 131 (779)
+-..+.+++.+|..|-++ |-.-+..|-.|..- -..+=..|.+.|+ +|+---.. .+
T Consensus 14 q~~l~~~L~~~g~~V~~~--gf~~~~~~~~~~~~-------~~~~~~~~~~~d~iIlPvpg~~d~g~i~~~~~~~~~~l~ 84 (296)
T PRK08306 14 QLELIRKLVELGAKVSLV--GFDQLDHGFTGVAK-------CSSLEEALSDVDVIILPVPGTNDEGEVDTVFSNEKLVLT 84 (296)
T ss_pred HHHHHHHHHHCCCEEEEE--ECCCCCCCCCCEEE-------ECCHHHHHHCCCEEEECCCCCCCCCEEECCCCCCCCCHH
T ss_conf 999999999779979998--35765556676177-------346788872399999788322589638553467876322
Q ss_pred HHHHHHHHHHCCCCCEEEHHHCCCCHHHHHHHHHHHHHCCCC---CCCCC---CCHHHHHHHHHHHHHHHHCCCHHHCEE
Q ss_conf 999999987088846062220648015799999998718942---16877---218999999999999970988224117
Q gi|254780137|r 132 DTMVSTIVALEPTFGGINLEDIKAPECFEVERILSQKLKIPF---LHDDQ---HGTAVTVTAATLNGMKLVGKKFSDIKI 205 (779)
Q Consensus 132 ~e~i~~v~~~~p~fg~i~lEDi~~p~~f~i~~~l~~~~~ipv---f~DD~---qGTa~v~lA~llnAl~~~gk~l~~~~i 205 (779)
+++++.++.-.+-|+|+- +|. ++++-++.++++ |-+|- --.-..+=+++.-|+.-+...|...|+
T Consensus 85 ~~~~~~l~~~~~vf~G~~-----~~~----l~~~~~~~~~~~~d~~e~d~vAi~NaipTAEGai~~ai~~tp~ti~gs~~ 155 (296)
T PRK08306 85 KELLEKTPEHCTIFSGIA-----NPY----LKELAETTGRKLIELFERDDVAIYNSIPTAEGAIMMAIEHTPITIHGSNV 155 (296)
T ss_pred HHHHHHCCCCCEEEEECC-----CHH----HHHHHHHCCCCEEEEECCCHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCE
T ss_conf 999974699987999559-----989----99999975983676200203555627014899999999659963247658
Q ss_pred EEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCCCCCCHHHHCCCCCEEEECCCCCCCCH
Q ss_conf 87425425678999999819885758999559603078733266788977450889888886058837862578877898
Q gi|254780137|r 206 VTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKSGPKPLSETMNNADVFLGLSVAGALDP 285 (779)
Q Consensus 206 v~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~~~~~l~ea~~~adv~iG~S~~g~~t~ 285 (779)
++.|.|-.|..+++.|..+|. ++.+++++ ...+.+.+..-.+......|.+.+.++|+.+.+=-.-++|+
T Consensus 156 lVlG~Gr~G~~lA~~l~~lGA---~V~V~aR~-------~~~~a~a~~~G~~~v~~~~L~~~~~~~D~i~NTIPa~Vlt~ 225 (296)
T PRK08306 156 LVLGFGRTGMTLARTLKALGA---KVKVGARK-------SAHLARITEMGYSPVHLSELAEEVGEADIIFNTIPALVLTK 225 (296)
T ss_pred EEECCCHHHHHHHHHHHHCCC---EEEEEECC-------HHHHHHHHHCCCEEEEHHHHHHHHCCCCEEEECCCHHHCCH
T ss_conf 998986899999999997799---69999799-------99999999769858719999977356999998985254399
Q ss_pred HHHHHCCCCCEEEEECCCCCCCCHHHHHHHCCCEEECCCC
Q ss_conf 8997218997799917872009988998518987980588
Q gi|254780137|r 286 AILKFMAEKPLIMVLANPNPEAMPDEIKKVRPDAMICTGR 325 (779)
Q Consensus 286 e~v~~M~~~PiIfaLsNP~pEi~p~~a~~~~g~aivatGr 325 (779)
+++..|.++.+|.=||-.-=-++.+-|++..-.++.|-|-
T Consensus 226 ~~l~~~~~~avIIDLAS~PGG~Df~~A~~~Gika~lapgL 265 (296)
T PRK08306 226 NVLSKMPPHALIIDLASKPGGTDFEYAKKLGIKALLAPGL 265 (296)
T ss_pred HHHHCCCCCCEEEEECCCCCCCCHHHHHHHCCEEEECCCC
T ss_conf 9994189996999947799973889999839859972899
No 48
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=97.92 E-value=0.00075 Score=45.61 Aligned_cols=137 Identities=21% Similarity=0.294 Sum_probs=95.4
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHH
Q ss_conf 72189999999999999709882241178742542567899999981988575899955960307873326678897745
Q gi|254780137|r 178 QHGTAVTVTAATLNGMKLVGKKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQ 257 (779)
Q Consensus 178 ~qGTa~v~lA~llnAl~~~gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~ 257 (779)
-+-||-=+.-++..+++-.+.+++..|+++.|.|.-|..+++.|...|.+ =+.+.|++|-|+... .++.....-.+
T Consensus 7 ~eATG~Gv~~~~~~~l~~~~~~l~g~~v~IqG~GnVG~~~a~~L~~~Gak--vv~vsD~~G~i~~~~--Gld~~~l~~~~ 82 (227)
T cd01076 7 EEATGRGVAYATREALKKLGIGLAGARVAIQGFGNVGSHAARFLHEAGAK--VVAVSDSDGTIYNPD--GLDVPALLAYK 82 (227)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCE--EEEEECCCCEEECCC--CCCHHHHHHHH
T ss_conf 73328899999999999769897899999989889999999999987995--999984787388888--89999999999
Q ss_pred CCC----------CCCHHHHCC-CCCEEEECCCCCCCCHHHHHHCCCCCEEEEECC-CC-CCCCHHHHHHHCCCEEE
Q ss_conf 088----------988888605-883786257887789889972189977999178-72-00998899851898798
Q gi|254780137|r 258 KSG----------PKPLSETMN-NADVFLGLSVAGALDPAILKFMAEKPLIMVLAN-PN-PEAMPDEIKKVRPDAMI 321 (779)
Q Consensus 258 ~~~----------~~~l~ea~~-~adv~iG~S~~g~~t~e~v~~M~~~PiIfaLsN-P~-pEi~p~~a~~~~g~aiv 321 (779)
... ..+-.+.+. .+|||+=+..++.++++-++.+.- .+|.--|| |+ ||. ++....+|-.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~DI~iP~A~~~~I~~~~a~~l~a-k~I~EgAN~p~t~~A--~~~L~~rgI~vi 156 (227)
T cd01076 83 KEHGSVLGFPGAERITNEELLELDCDILIPAALENQITADNADRIKA-KIIVEAANGPTTPEA--DEILHERGVLVV 156 (227)
T ss_pred HHCCCCCCCCCCCCCCCCCHHCCCCCEEEECCCCCCCCHHHHHHCCC-EEEEECCCCCCCHHH--HHHHHHCCCEEE
T ss_conf 96598026788753896231047887898777669779999854476-199845789989889--999998869896
No 49
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=97.91 E-value=0.00064 Score=46.06 Aligned_cols=130 Identities=22% Similarity=0.245 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHCCCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCCCC---
Q ss_conf 99999999997098822411787425425678999999819885758999559603078733266788977450889---
Q gi|254780137|r 185 VTAATLNGMKLVGKKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKSGP--- 261 (779)
Q Consensus 185 ~lA~llnAl~~~gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~~~--- 261 (779)
+.-++..+++-.+.+++..|+++.|.|.-|...+++|..+|.+ -+.+-|++|-+|.. +.++.....+......
T Consensus 6 v~~~~~~a~~~~~~~l~g~~vaVqGfGnVG~~~a~~l~~~Gak--vvavsD~~G~i~~~--~g~~~~~~~~~~~~~~~~~ 81 (217)
T cd05211 6 VVVAMKAAMKHLGDSLEGLTVAVQGLGNVGWGLAKKLAEEGGK--VLAVSDPDGYIYDP--GITTEELINYAVALGGSAR 81 (217)
T ss_pred HHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCE--EEEEECCCCEEECC--CCCCHHHHHHHHHHCCCCC
T ss_conf 9999999999769685799999989889999999999985998--99998578717789--9986999999998189653
Q ss_pred ------CCHHHHC-CCCCEEEECCCCCCCCHHHHHHCCCCCEEEEECC-CC-CCCCHHHHHHHCCCEEE
Q ss_conf ------8888860-5883786257887789889972189977999178-72-00998899851898798
Q gi|254780137|r 262 ------KPLSETM-NNADVFLGLSVAGALDPAILKFMAEKPLIMVLAN-PN-PEAMPDEIKKVRPDAMI 321 (779)
Q Consensus 262 ------~~l~ea~-~~adv~iG~S~~g~~t~e~v~~M~~~PiIfaLsN-P~-pEi~p~~a~~~~g~aiv 321 (779)
.+-.+.+ ..+|||+=+..++.+|++.+..+.-+ +|.--|| |+ || .++....+|-.++
T Consensus 82 ~~~~~~~~~~~~~~~~~DIliPaAl~~~I~~~~a~~i~ak-~I~EgAN~P~t~e--a~~iL~~rgI~vi 147 (217)
T cd05211 82 VKVQDYFPGEAILGLDVDIFAPCALGNVIDLENAKKLKAK-VVAEGANNPTTDE--ALRILHERGIVVA 147 (217)
T ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHCCE-EEECCCCCCCCHH--HHHHHHHCCCEEE
T ss_conf 6665305986500367768964244588798999871772-8950678998978--9999997899894
No 50
>pfam01262 AlaDh_PNT_C Alanine dehydrogenase/PNT, C-terminal domain. This family now also contains the lysine 2-oxoglutarate reductases.
Probab=97.76 E-value=9.8e-05 Score=51.70 Aligned_cols=94 Identities=21% Similarity=0.371 Sum_probs=71.9
Q ss_pred HHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHC------CCCCCHHHHCCCCCE
Q ss_conf 22411787425425678999999819885758999559603078733266788977450------889888886058837
Q gi|254780137|r 200 FSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQK------SGPKPLSETMNNADV 273 (779)
Q Consensus 200 l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~------~~~~~l~ea~~~adv 273 (779)
..-.++|+.|+|-+|.+-++....+|. +++.+|. |.+.+.+.+..+++. .+...|.+.+..+|+
T Consensus 18 v~pa~vvViG~Gv~G~~A~~~A~~lGa---~V~v~D~-------~~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~aDv 87 (150)
T pfam01262 18 VPPAKVVVIGGGVVGLGAAATAKGLGA---PVTILDV-------RPERLEQLDSLFAEFVETDIFSNCEYLAEAIAEADL 87 (150)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC---EEEEEEC-------CHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHCCE
T ss_conf 767779998987899999999986799---8999729-------999999999864762001665379999999743879
Q ss_pred EEECC------CCCCCCHHHHHHCCCCCEEEEECCC
Q ss_conf 86257------8877898899721899779991787
Q gi|254780137|r 274 FLGLS------VAGALDPAILKFMAEKPLIMVLANP 303 (779)
Q Consensus 274 ~iG~S------~~g~~t~e~v~~M~~~PiIfaLsNP 303 (779)
+||.. .|-++|++|+++|.+..+|-=+|--
T Consensus 88 vIgavl~pg~~aP~lIt~~mv~~MkpGsVIVDvaiD 123 (150)
T pfam01262 88 VIGTVLIPGARAPKLVTREMVKTMKPGSVIVDVAID 123 (150)
T ss_pred EEEEEECCCCCCCCEECHHHHHHHCCCCEEEEEECC
T ss_conf 997203178869922079999844799399996204
No 51
>pfam00208 ELFV_dehydrog Glutamate/Leucine/Phenylalanine/Valine dehydrogenase.
Probab=97.71 E-value=0.0032 Score=41.21 Aligned_cols=136 Identities=20% Similarity=0.261 Sum_probs=91.4
Q ss_pred CCHHHHHHHHHHHHHHHHCC-CHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHH-HHH
Q ss_conf 21899999999999997098-8224117874254256789999998198857589995596030787332667889-774
Q gi|254780137|r 179 HGTAVTVTAATLNGMKLVGK-KFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKS-VYA 256 (779)
Q Consensus 179 qGTa~v~lA~llnAl~~~gk-~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~-~~a 256 (779)
+-||-=+.-.+..+++-.|. +++..|+++.|.|.-|...+++|...|.+ =+.+-|++|.||.. +.++.... .+.
T Consensus 8 eATg~Gv~~~~~~~~~~~~~~~l~g~~v~IqGfGnVG~~~a~~l~~~Gak--vvavsD~~G~i~~~--~Gldi~~l~~~~ 83 (237)
T pfam00208 8 EATGYGVVYFVEEALKKLGGDSLEGKTVAVQGFGNVGSYAAEKLLELGAK--VVAVSDSSGYIYDP--NGIDIEELLELK 83 (237)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCE--EEEEECCCCEEECC--CCCCHHHHHHHH
T ss_conf 34189999999999997499987899999989889999999999987996--99998287679999--999999999999
Q ss_pred HCCC------------CCCHHHHCC-CCCEEEECCCCCCCCHHHHHHCCCCCEEEEECC-CC-CCCCHHHHHHHCCCEEE
Q ss_conf 5088------------988888605-883786257887789889972189977999178-72-00998899851898798
Q gi|254780137|r 257 QKSG------------PKPLSETMN-NADVFLGLSVAGALDPAILKFMAEKPLIMVLAN-PN-PEAMPDEIKKVRPDAMI 321 (779)
Q Consensus 257 ~~~~------------~~~l~ea~~-~adv~iG~S~~g~~t~e~v~~M~~~PiIfaLsN-P~-pEi~p~~a~~~~g~aiv 321 (779)
..+. ..+-.+.+. .+|||+=+..++.+|++-+..+.- .+|.--|| |+ ||. ++....+|-.++
T Consensus 84 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~DIliPaA~~~~I~~~na~~i~a-k~I~EgAN~p~t~eA--~~~L~~rgI~vi 160 (237)
T pfam00208 84 EEGGGRVVEYAGSGAEYISGEELWEIDCDILVPCATQNEINEENAKLIKA-KAVVEGANMPTTPEA--DEILEERGILYA 160 (237)
T ss_pred HHHCCEEECCCCCCCEECCCCCCCCCCCCEEEECCCCCCCCHHHHHHCCC-CEEEECCCCCCCHHH--HHHHHHCCCEEE
T ss_conf 97198431246657534487100047666886445568899899986275-489753789889789--999998899896
No 52
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=97.69 E-value=0.00069 Score=45.85 Aligned_cols=228 Identities=17% Similarity=0.257 Sum_probs=117.3
Q ss_pred ECCCCEECCC-CCCCCCCCCCHHHHHHHHHHHHCCCCE--EEEECCCCCHHHHHHHHHHHCCCCCEEEHHHCCCCHHHHH
Q ss_conf 8178500254-220510583001008999986269852--6542388988999999987088846062220648015799
Q gi|254780137|r 85 VSNGSAVLGL-GDIGPLASKPVMEGKAVLFKKFAGINV--FDIEINAKDVDTMVSTIVALEPTFGGINLEDIKAPECFEV 161 (779)
Q Consensus 85 vtdGt~vLGL-GdiG~~a~~pvmeGK~~L~k~~agid~--~~i~~~~~d~~e~i~~v~~~~p~fg~i~lEDi~~p~~f~i 161 (779)
||..|++.|| |+==.+.=-|.|-- .+|++++ +|+ .+++++.+|-+.+++..+.. .|.|.|. .-|+=-.+
T Consensus 1 i~~~tk~~gliG~pi~hS~SP~ihn--~~f~~~g-l~~~Y~~~~v~~~~l~~~i~~l~~~--~~~G~nV---T~P~K~~v 72 (275)
T PRK00258 1 ITGKTDLYAVIGNPIAHSKSPFIHN--AAAKQLG-LDGEYLAFLVPLDDLEDAVRGFFAL--GGKGANV---TVPFKEAA 72 (275)
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHH--HHHHHCC-CCCEEEEEECCHHHHHHHHHHHHHC--CCCEEEE---CHHHHHHH
T ss_conf 9887628999888824130799999--9999869-9938998878888999999977766--9877996---68989999
Q ss_pred H---HHHHHH------HCCCCCC-CCCCCHHHHHHHHHHHHHHHHCCCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCE
Q ss_conf 9---999987------1894216-87721899999999999997098822411787425425678999999819885758
Q gi|254780137|r 162 E---RILSQK------LKIPFLH-DDQHGTAVTVTAATLNGMKLVGKKFSDIKIVTLGAGAAALACLNLLVTMGVRRENI 231 (779)
Q Consensus 162 ~---~~l~~~------~~ipvf~-DD~qGTa~v~lA~llnAl~~~gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i 231 (779)
. +++.+. .|--++- +..+|+-- =.-|++.+++-.+...+..++++.|||.|+-+++-.|...|.+ ++
T Consensus 73 ~~~ld~l~~~A~~igavNTi~~~~g~l~G~NT-D~~G~~~~l~~~~~~~~~k~vlIlGaGGaarai~~al~~~g~~--~i 149 (275)
T PRK00258 73 FALADELSERARLAGAVNTLVLEDGRLIGDNT-DGIGFVRDLERLGLDLKGKRILLLGAGGAARAVILPLLELGVA--EI 149 (275)
T ss_pred HHCCCHHHHHHHHHCCEEEEEEECCEEEEEEC-CHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHCCCC--EE
T ss_conf 86246021778874554589955998999836-7789999999848785687599988871079999999976999--89
Q ss_pred EEEECCCEEECCCCCCCCHHHHHHHHCCC---CCCHHHHCCCCCEEEECCCCCC---CCHHHHHHCCCCCEEEEEC-CCC
Q ss_conf 99955960307873326678897745088---9888886058837862578877---8988997218997799917-872
Q gi|254780137|r 232 WVYDLEGLVYEGREKKFDKWKSVYAQKSG---PKPLSETMNNADVFLGLSVAGA---LDPAILKFMAEKPLIMVLA-NPN 304 (779)
Q Consensus 232 ~~~D~~Gli~~~r~~~~~~~~~~~a~~~~---~~~l~ea~~~adv~iG~S~~g~---~t~e~v~~M~~~PiIfaLs-NP~ 304 (779)
++++|. ..|. ......+..... ...+......+|++|.++-.|. ..+--.....++.++|=+. ||.
T Consensus 150 ~i~nR~----~~~a---~~l~~~~~~~~~~~~~~~~~~~~~~~diiInaTp~Gm~~~~~~~~~~~~~~~~~v~D~~Y~P~ 222 (275)
T PRK00258 150 TIVNRT----VERA---EELAELFGEGVQALGLDELAGELADFDLIINTTSAGMSGELPPLPASLLRPGTVVYDMIYGPL 222 (275)
T ss_pred EEEECC----HHHH---HHHHHHHCCCCCEEEHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHCCCCCEEEEEEECCC
T ss_conf 999589----9999---999998356762753787543044577799657777778865113876488866998665799
Q ss_pred CCCCHHHHHHHCCCEEECCCCCCCCCCC
Q ss_conf 0099889985189879805887887743
Q gi|254780137|r 305 PEAMPDEIKKVRPDAMICTGRSDFSNQV 332 (779)
Q Consensus 305 pEi~p~~a~~~~g~aivatGrs~~pnQ~ 332 (779)
+--.-..|+ ..|..+ -.|..-.-.|.
T Consensus 223 ~T~ll~~a~-~~G~~~-i~Gl~Mli~Qa 248 (275)
T PRK00258 223 PTPFLAWAK-AQGART-VDGLGMLVHQA 248 (275)
T ss_pred CCHHHHHHH-HCCCEE-ECCHHHHHHHH
T ss_conf 999999999-882948-57799999999
No 53
>pfam01488 Shikimate_DH Shikimate / quinate 5-dehydrogenase. This family contains both shikimate and quinate dehydrogenases. Shikimate 5-dehydrogenase catalyses the conversion of shikimate to 5-dehydroshikimate. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites 3-dehydroquinate and dehydroshikimate.
Probab=97.67 E-value=0.00012 Score=51.08 Aligned_cols=97 Identities=15% Similarity=0.239 Sum_probs=72.6
Q ss_pred CHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHH----CCCCCCHHHHCCCCCEE
Q ss_conf 82241178742542567899999981988575899955960307873326678897745----08898888860588378
Q gi|254780137|r 199 KFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQ----KSGPKPLSETMNNADVF 274 (779)
Q Consensus 199 ~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~----~~~~~~l~ea~~~adv~ 274 (779)
++++.|+++.|||..|-.+++.|...|.+ +++++.| +.+|. ......|.. ..+...+.+.+..+|++
T Consensus 9 ~l~~~~vlVIGaG~~~~~~~~~L~~~g~~--~i~v~nR----t~~ka---~~la~~~~~~~~~~~~~~~l~~~l~~~Div 79 (134)
T pfam01488 9 DLKGKKVLLIGAGEMARLAAKHLLSKGAK--KITIANR----TLEKA---KELAEEFGGEEVEALPLDELEELLAEADIV 79 (134)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCC--EEEEECC----CHHHH---HHHHHHCCCCCEEEEECHHHHHHHHHCCEE
T ss_conf 81489899999609999999999975998--8999547----57899---999998499725898513544136319999
Q ss_pred EECCC-C-CCCCHHHHHHCCCCCEEEEECCCC
Q ss_conf 62578-8-778988997218997799917872
Q gi|254780137|r 275 LGLSV-A-GALDPAILKFMAEKPLIMVLANPN 304 (779)
Q Consensus 275 iG~S~-~-g~~t~e~v~~M~~~PiIfaLsNP~ 304 (779)
|.+++ + -++++++++.+.+.-+|+=||.|-
T Consensus 80 I~aT~s~~~ii~~~~~~~~~~~~~iiDLavPr 111 (134)
T pfam01488 80 ISATSAPTPIITKEMVEEALKGLLFVDIAVPR 111 (134)
T ss_pred EEECCCCCCEECHHHHHHCCCCEEEEEECCCC
T ss_conf 99259997364899997443985999834788
No 54
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=97.62 E-value=0.00046 Score=47.09 Aligned_cols=252 Identities=19% Similarity=0.263 Sum_probs=134.9
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCEECCCCCCCC-CCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCC
Q ss_conf 889988875135847999817850025422051-0583001008999986269852654238898899999998708884
Q gi|254780137|r 67 EDPSKAAMYTNRSNLVAVVSNGSAVLGLGDIGP-LASKPVMEGKAVLFKKFAGINVFDIEINAKDVDTMVSTIVALEPTF 145 (779)
Q Consensus 67 ~~~~~~~~~t~~~n~vaVvtdGt~vLGLGdiG~-~a~~pvmeGK~~L~k~~agid~~~i~~~~~d~~e~i~~v~~~~p~f 145 (779)
--|+.+.+++..|..|.|=++--.=-|.-|--= .+|--|.. ..-+|+ + |.+ +.++...++|+ +.+.+.-
T Consensus 18 ltP~~V~~Lvk~G~~V~VE~gAG~~agfsD~~Y~~AGA~Iv~-~~ev~~--a--diI-lKVk~P~~~E~----~~lr~g~ 87 (510)
T PRK09424 18 ATPKTVEQLLKLGFEVAVESGAGQLASFDDAAYEAAGAEIVD-GAEVWQ--S--DII-LKVNAPTDDEI----ALLREGA 87 (510)
T ss_pred CCHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHCCCEECC-HHHHHH--C--CEE-EEECCCCHHHH----HHCCCCC
T ss_conf 189999999978999999789883479898999973999957-889964--9--999-99799998999----7347998
Q ss_pred CEEEHHH-CCCCHHHHHHHHHHHHHCCCCCCCCC-------CC----HHHHHHHH----HHHHHHHHCC----------C
Q ss_conf 6062220-64801579999999871894216877-------21----89999999----9999997098----------8
Q gi|254780137|r 146 GGINLED-IKAPECFEVERILSQKLKIPFLHDDQ-------HG----TAVTVTAA----TLNGMKLVGK----------K 199 (779)
Q Consensus 146 g~i~lED-i~~p~~f~i~~~l~~~~~ipvf~DD~-------qG----Ta~v~lA~----llnAl~~~gk----------~ 199 (779)
-.|-+=+ ..+| ++.+.|.++ ++-+|-=|. |. +.--.+|| +.+| ..-+| .
T Consensus 88 ~Lis~L~pa~~~---el~~~L~~~-~vtaiA~E~VPRisRAQsmd~LSsms~IAGy~AVi~AA-~~l~r~~~g~~TaaG~ 162 (510)
T PRK09424 88 TLVSFIWPAQNP---ELMEKLAAR-GITVLAMDSVPRISRAQSLDALSSMANIAGYRAVVEAA-HEFGRFFTGQITAAGK 162 (510)
T ss_pred EEEEECCCCCCH---HHHHHHHHC-CCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH-HHCCCCCCCCCCCCCC
T ss_conf 999976866798---999999975-99289752233257789997123578876678999999-8668667985335777
Q ss_pred HHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCE------------EECCCCCCCCHHHHHHHHCC-------C
Q ss_conf 2241178742542567899999981988575899955960------------30787332667889774508-------8
Q gi|254780137|r 200 FSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGL------------VYEGREKKFDKWKSVYAQKS-------G 260 (779)
Q Consensus 200 l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gl------------i~~~r~~~~~~~~~~~a~~~-------~ 260 (779)
+.-.|+++.|||-||..-+..-..+|. .+..+|.+=- +.-+..+. ..-..-||+.. .
T Consensus 163 VpPAkVlViGaGVAGlqAi~tA~~LGA---~V~a~DvR~~~~EqveSlGa~fv~v~~~e~-~~~~gGYAk~~s~e~~~~q 238 (510)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGA---IVRAFDTRPEVKEQVESMGAEFLELDFEEE-GGSGDGYAKVMSEEFIKAE 238 (510)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC---EEEEECCCHHHHHHHHHHCCCEEEEECCCC-CCCCCCCCCCCCHHHHHHH
T ss_conf 788528997464777999999962797---899965878899999970674255210102-4457850354567899999
Q ss_pred CCCHHHHCCCCCEEEECC------CCCCCCHHHHHHCCCCCEEEEECCCC---CCCC-HHHHHHH-CCCEEECCCCCCCC
Q ss_conf 988888605883786257------88778988997218997799917872---0099-8899851-89879805887887
Q gi|254780137|r 261 PKPLSETMNNADVFLGLS------VAGALDPAILKFMAEKPLIMVLANPN---PEAM-PDEIKKV-RPDAMICTGRSDFS 329 (779)
Q Consensus 261 ~~~l~ea~~~adv~iG~S------~~g~~t~e~v~~M~~~PiIfaLsNP~---pEi~-p~~a~~~-~g~aivatGrs~~p 329 (779)
...+.+.++.+|+.||+- .|-++|+|||++|-+..+|--||-.. -|.+ |.+...+ .|..|+ |.+++|
T Consensus 239 ~~~~~e~~~~aDiVItTalIPG~~AP~LIt~emV~~MKpGSVIVDlAadqGGN~E~T~pge~~~~~~GV~ii--G~~nlp 316 (510)
T PRK09424 239 MALFAEQAKEVDIIITTALIPGKPAPKLITKEMVDSMKPGSVIVDLAAANGGNCELTVPGEVVVTDNGVKII--GYTDLP 316 (510)
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCCCEECCHHHHHHCCCCCEEEEECCCCCCCCCCCCCCEEEEECCCEEEE--CCCCHH
T ss_conf 999999974247799865418998997037999952699978999525579971066399489941996998--888511
Q ss_pred CCC---------CHHHHHH
Q ss_conf 743---------5034556
Q gi|254780137|r 330 NQV---------NNVLCFP 339 (779)
Q Consensus 330 nQ~---------NN~l~FP 339 (779)
++. ||++-|=
T Consensus 317 s~~~~~aS~lya~Ni~~~l 335 (510)
T PRK09424 317 SRLPTQSSQLYGTNLVNLL 335 (510)
T ss_pred CCCHHHHHHHHHHHHHHHH
T ss_conf 0377899999999999999
No 55
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.62 E-value=0.0011 Score=44.46 Aligned_cols=122 Identities=15% Similarity=0.215 Sum_probs=96.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHH
Q ss_conf 16877218999999999999970988224117874254256789999998198857589995596030787332667889
Q gi|254780137|r 174 LHDDQHGTAVTVTAATLNGMKLVGKKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKS 253 (779)
Q Consensus 174 f~DD~qGTa~v~lA~llnAl~~~gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~ 253 (779)
+-|..+||+--++-|++. .|+.-+.--++|+.|=|--|-|||.-+..+|. ++++++ .+|.++
T Consensus 183 ~FDNrYGtGqS~~dgi~r---~Tn~llaGK~vVV~GYG~~GkG~A~~arg~GA---~ViVtE------------vDPi~A 244 (427)
T PRK05476 183 KFDNRYGTGESLLDGIKR---ATNVLIAGKVVVVAGYGDVGKGSAQRLRGLGA---RVIVTE------------IDPICA 244 (427)
T ss_pred HCCCCCCCCCCHHHHHHH---HHCCEECCCEEEEECCCCCCCHHHHHHHCCCC---EEEEEE------------CCHHHH
T ss_conf 224553346249999998---73521257379995566556008998741898---799980------------473799
Q ss_pred HHHHCCC--CCCHHHHCCCCCEEEECCC-CCCCCHHHHHHCCCCCEEEEECCCCCCCCHHHHH
Q ss_conf 7745088--9888886058837862578-8778988997218997799917872009988998
Q gi|254780137|r 254 VYAQKSG--PKPLSETMNNADVFLGLSV-AGALDPAILKFMAEKPLIMVLANPNPEAMPDEIK 313 (779)
Q Consensus 254 ~~a~~~~--~~~l~ea~~~adv~iG~S~-~g~~t~e~v~~M~~~PiIfaLsNP~pEi~p~~a~ 313 (779)
.-|.-.. -.++.|+.+.+|+||-+++ .++++.+..+.|-...|+--.--=+-||.-+...
T Consensus 245 LeA~mDGf~V~~~~~a~~~~DifiT~TG~~~vI~~~h~~~MKdgaIl~N~GHfd~EIdv~~L~ 307 (427)
T PRK05476 245 LQAAMDGFEVMTMEEAAEKADIFVTATGNKDVITAEHMEAMKDGAIVCNIGHFDNEIDVAALE 307 (427)
T ss_pred HHHHHCCCCCCCHHHHHHHCCEEEEECCCCCCCCHHHHHHHCCCEEEECCCCCCCEEEHHHHH
T ss_conf 998862783565899862089999904895724899998507882997677775043288775
No 56
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=97.53 E-value=0.00071 Score=45.77 Aligned_cols=175 Identities=20% Similarity=0.266 Sum_probs=113.1
Q ss_pred CHHHHH---HHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCC-----CCCEEEHHHCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 001008---9999862698526542388988999999987088-----84606222064801579999999871894216
Q gi|254780137|r 104 PVMEGK---AVLFKKFAGINVFDIEINAKDVDTMVSTIVALEP-----TFGGINLEDIKAPECFEVERILSQKLKIPFLH 175 (779)
Q Consensus 104 pvmeGK---~~L~k~~agid~~~i~~~~~d~~e~i~~v~~~~p-----~fg~i~lEDi~~p~~f~i~~~l~~~~~ipvf~ 175 (779)
=|..|. -.||.-.+|.|.+=++- ++|.--||.-|- .+-|--| ++--.++|..-+|.|.+..|+
T Consensus 85 ~v~~~~~Av~HLfrVAsGLDSmVlGE-----~QILGQVK~Ay~~a~~~g~~g~~L-~~lFqkAi~~gKrvRseT~I~--- 155 (414)
T COG0373 85 YVLRGEEAVRHLFRVASGLDSLVLGE-----TQILGQVKDAYAKAQENGTLGKVL-NRLFQKAISVGKRVRSETGIG--- 155 (414)
T ss_pred EEECCHHHHHHHHHHHCCCHHHHCCC-----HHHHHHHHHHHHHHHHCCCCHHHH-HHHHHHHHHHHHHHHCCCCCC---
T ss_conf 89727899999999860523664486-----999999999999999819852899-999999998777641014778---
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHH
Q ss_conf 87721899999999999997098822411787425425678999999819885758999559603078733266788977
Q gi|254780137|r 176 DDQHGTAVTVTAATLNGMKLVGKKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVY 255 (779)
Q Consensus 176 DD~qGTa~v~lA~llnAl~~~gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~ 255 (779)
.|--.|..|++-=|.++.|. |.+.++++.|||.-|-.+++.|...|+. ++++++| |..| ...+
T Consensus 156 ---~~~VSi~saAv~lA~~~~~~-L~~~~vlvIGAGem~~lva~~L~~~g~~--~i~IaNR----T~er-------A~~L 218 (414)
T COG0373 156 ---KGAVSISSAAVELAKRIFGS-LKDKKVLVIGAGEMGELVAKHLAEKGVK--KITIANR----TLER-------AEEL 218 (414)
T ss_pred ---CCCCCHHHHHHHHHHHHHCC-CCCCEEEEECCCHHHHHHHHHHHHCCCC--EEEEECC----CHHH-------HHHH
T ss_conf ---88612399999999998365-4467699986518999999999858987--7999758----7899-------9999
Q ss_pred HHC-----CCCCCHHHHCCCCCEEEECC-CC-CCCCHHHHHHCCC--CC-EEEEECCCC
Q ss_conf 450-----88988888605883786257-88-7789889972189--97-799917872
Q gi|254780137|r 256 AQK-----SGPKPLSETMNNADVFLGLS-VA-GALDPAILKFMAE--KP-LIMVLANPN 304 (779)
Q Consensus 256 a~~-----~~~~~l~ea~~~adv~iG~S-~~-g~~t~e~v~~M~~--~P-iIfaLsNP~ 304 (779)
|+. .....+.+.+..+||++-.+ .| -+++.++++.--+ +. ++|-+|||-
T Consensus 219 a~~~~~~~~~l~el~~~l~~~DvVissTsa~~~ii~~~~ve~a~~~r~~~livDiavPR 277 (414)
T COG0373 219 AKKLGAEAVALEELLEALAEADVVISSTSAPHPIITREMVERALKIRKRLLIVDIAVPR 277 (414)
T ss_pred HHHHCCEEECHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 99838702218778876520799999069985540788899887411675999826999
No 57
>pfam05221 AdoHcyase S-adenosyl-L-homocysteine hydrolase.
Probab=97.51 E-value=0.0017 Score=43.17 Aligned_cols=121 Identities=16% Similarity=0.176 Sum_probs=96.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHH
Q ss_conf 68772189999999999999709882241178742542567899999981988575899955960307873326678897
Q gi|254780137|r 175 HDDQHGTAVTVTAATLNGMKLVGKKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSV 254 (779)
Q Consensus 175 ~DD~qGTa~v~lA~llnAl~~~gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~ 254 (779)
-|..+||+--++-|++. .|+.-+.--++|+.|=|--|-|||.-+..+|. ++++++ .+|.+..
T Consensus 186 FDNrYGtgqS~~dgi~r---~Tn~liaGK~vVV~GYG~cGkG~A~r~rglGA---~V~VtE------------vDPi~AL 247 (430)
T pfam05221 186 FDNLYGCRESLPDGIKR---ATDVMIAGKVAVVCGYGDVGKGCAASLRGQGA---RVIVTE------------IDPICAL 247 (430)
T ss_pred HCCCCCCHHHHHHHHHH---HHCCEECCCEEEEECCCCCCHHHHHHHHHCCC---EEEEEC------------CCHHHHH
T ss_conf 01343312309999998---61713427679995567535789999842798---899954------------7858999
Q ss_pred HHHCCCC--CCHHHHCCCCCEEEECCC-CCCCCHHHHHHCCCCCEEEEECCCCCCCCHHHHH
Q ss_conf 7450889--888886058837862578-8778988997218997799917872009988998
Q gi|254780137|r 255 YAQKSGP--KPLSETMNNADVFLGLSV-AGALDPAILKFMAEKPLIMVLANPNPEAMPDEIK 313 (779)
Q Consensus 255 ~a~~~~~--~~l~ea~~~adv~iG~S~-~g~~t~e~v~~M~~~PiIfaLsNP~pEi~p~~a~ 313 (779)
-|.-... .++.|+++.+|+||-+++ .++++.+..+.|-...|+--.--=+-||.-+...
T Consensus 248 eA~mDGf~V~~m~eaa~~~DifvT~TG~~~vI~~~H~~~MKdgaIl~N~GHfd~EId~~~L~ 309 (430)
T pfam05221 248 QAAMEGYQVVTLEEVVKDADIFVTTTGCVDIIVGRHFMNMKKDAIVCNIGHFDCEIDVGWLN 309 (430)
T ss_pred HHHHCCCCCCCHHHHHHHCCEEEEECCCCCCCCHHHHHHHCCCEEEEECCCCCHHEEHHHHH
T ss_conf 99855884577999985599999936988756899998641784999568871413378774
No 58
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.41 E-value=0.0037 Score=40.79 Aligned_cols=122 Identities=15% Similarity=0.196 Sum_probs=96.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHH
Q ss_conf 16877218999999999999970988224117874254256789999998198857589995596030787332667889
Q gi|254780137|r 174 LHDDQHGTAVTVTAATLNGMKLVGKKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKS 253 (779)
Q Consensus 174 f~DD~qGTa~v~lA~llnAl~~~gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~ 253 (779)
+-|..+||+--++-|++. .|+.-+.--++|+.|=|--|-|||.-+..+|. ++++++ .+|.+.
T Consensus 177 ~FDNrYGtgqS~~dgi~r---~Tn~liaGK~vVV~GYG~~GkG~A~r~rglGA---~V~VtE------------vDPi~A 238 (413)
T cd00401 177 KFDNLYGCRESLIDGIKR---ATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGA---RVIVTE------------VDPICA 238 (413)
T ss_pred HCCCCCCCCHHHHHHHHH---HHHHEECCCEEEEECCCCCCHHHHHHHHHCCC---EEEEEC------------CCHHHH
T ss_conf 401443332108999998---74212137779994577635688998865898---899971------------775889
Q ss_pred HHHHCCCC--CCHHHHCCCCCEEEECCC-CCCCCHHHHHHCCCCCEEEEECCCCCCCCHHHHH
Q ss_conf 77450889--888886058837862578-8778988997218997799917872009988998
Q gi|254780137|r 254 VYAQKSGP--KPLSETMNNADVFLGLSV-AGALDPAILKFMAEKPLIMVLANPNPEAMPDEIK 313 (779)
Q Consensus 254 ~~a~~~~~--~~l~ea~~~adv~iG~S~-~g~~t~e~v~~M~~~PiIfaLsNP~pEi~p~~a~ 313 (779)
.-|.-... .++.|+++.+|+||-+++ .++++.+..+.|-...|+--..-=+-||.-+...
T Consensus 239 LeA~mDGf~V~~m~~a~~~~DifiTaTGn~~VI~~eH~~~MKdgaIl~N~GHfd~EId~~~L~ 301 (413)
T cd00401 239 LQAAMEGYEVMTMEEAVKEGDIFVTTTGNKDIITGEHFEQMKDGAIVCNIGHFDVEIDVKGLK 301 (413)
T ss_pred HHHHHCCCCCCCHHHHHHHCCEEEEECCCCCCCCHHHHHHHCCCEEEEECCCCCHHEEHHHHH
T ss_conf 999856894577999972389999933887737399999845886998067772323099887
No 59
>PTZ00075 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.33 E-value=0.0035 Score=40.96 Aligned_cols=127 Identities=17% Similarity=0.232 Sum_probs=99.9
Q ss_pred HCCCCC----------CCCCCCHHHHHHHHHHHHHHHHCCCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCC
Q ss_conf 189421----------6877218999999999999970988224117874254256789999998198857589995596
Q gi|254780137|r 169 LKIPFL----------HDDQHGTAVTVTAATLNGMKLVGKKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEG 238 (779)
Q Consensus 169 ~~ipvf----------~DD~qGTa~v~lA~llnAl~~~gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~G 238 (779)
|.+|++ -|..+||+--++-|++. .|+.-+.--++|+.|=|--|-|||.-+..+|. ++++++
T Consensus 214 L~fP~i~VNDs~tK~~FDNrYGtgqS~~dgi~r---aTn~liaGK~vVV~GYG~~GkG~A~~~rg~GA---~ViVtE--- 284 (476)
T PTZ00075 214 LLFPAINVNDSVTKSKFDNLYGCRESLVDGIKR---ATDVMIAGKTVVVCGYGDVGKGCAQALRGFGA---RVVVTE--- 284 (476)
T ss_pred CCCEEEEECCHHHHHHHCCCCCHHHHHHHHHHH---HHCCEECCCEEEEEECCCCCHHHHHHHCCCCC---EEEEEC---
T ss_conf 021189987655523402222113659999998---62834547589995045301214766535897---899961---
Q ss_pred EEECCCCCCCCHHHHHHHHCCCC--CCHHHHCCCCCEEEECCC-CCCCCHHHHHHCCCCCEEEEECCCCCCCCHHHHH
Q ss_conf 03078733266788977450889--888886058837862578-8778988997218997799917872009988998
Q gi|254780137|r 239 LVYEGREKKFDKWKSVYAQKSGP--KPLSETMNNADVFLGLSV-AGALDPAILKFMAEKPLIMVLANPNPEAMPDEIK 313 (779)
Q Consensus 239 li~~~r~~~~~~~~~~~a~~~~~--~~l~ea~~~adv~iG~S~-~g~~t~e~v~~M~~~PiIfaLsNP~pEi~p~~a~ 313 (779)
.+|.++.-|.-... .++.|+++.+|+||-+++ .++++.+..+.|-...|+--.--=+-||.-+...
T Consensus 285 ---------iDPi~ALqA~MdGf~V~~m~ea~~~~DifVTaTGn~~VI~~~H~~~MKdgaIl~N~GHfd~EId~~~L~ 353 (476)
T PTZ00075 285 ---------IDPICALQAAMEGYQVVLLEDVVETADIFVTATGNDDIITLEHFPRMKDDAIVGNIGHFDTEIQVAWLK 353 (476)
T ss_pred ---------CCCHHHHHHHHCCCEEEEHHHHHHHCCEEEEECCCCCCCCHHHHHHHCCCEEEEECCCCCHHEEHHHHH
T ss_conf ---------680789998745878756999883399999934997746899998653780999458784104089887
No 60
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=97.31 E-value=0.017 Score=36.27 Aligned_cols=135 Identities=16% Similarity=0.187 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHH---H
Q ss_conf 8999999999999970988224117874254256789999998198857589995596030787332667889774---5
Q gi|254780137|r 181 TAVTVTAATLNGMKLVGKKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYA---Q 257 (779)
Q Consensus 181 Ta~v~lA~llnAl~~~gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a---~ 257 (779)
|+-=+.-.+..+++-.+.+|+..|+++.|-|..|...+++|...|.+ =+-+.|+.|-||.. +.++..+.... +
T Consensus 17 TG~Gv~~~~~~~~~~~~~~l~g~~vaIQGfGnVG~~aA~~l~e~Gak--vVaVsD~~G~i~~~--~Gld~~~l~~l~~~k 92 (254)
T cd05313 17 TGYGLVYFVEEMLKDRNETLKGKRVAISGSGNVAQYAAEKLLELGAK--VVTLSDSKGYVYDP--DGFTGEKLAELKEIK 92 (254)
T ss_pred EHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCE--EEEEECCCCEEECC--CCCCHHHHHHHHHHH
T ss_conf 10889999999999679695899999989779999999999977997--99998578508879--999889999999999
Q ss_pred CCCCCCH---------------HHHC-CCCCEEEECCCCCCCCHHHHHHCCCC--CEEEEECC-CC-CCCCHHHHHHHCC
Q ss_conf 0889888---------------8860-58837862578877898899721899--77999178-72-0099889985189
Q gi|254780137|r 258 KSGPKPL---------------SETM-NNADVFLGLSVAGALDPAILKFMAEK--PLIMVLAN-PN-PEAMPDEIKKVRP 317 (779)
Q Consensus 258 ~~~~~~l---------------~ea~-~~adv~iG~S~~g~~t~e~v~~M~~~--PiIfaLsN-P~-pEi~p~~a~~~~g 317 (779)
......+ .+.+ ..+|||+=+...+.+|++-...+... .+|.--|| |+ ||.. +....+|
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cDIliPaA~en~I~~~nA~~i~a~~ck~IvEgANgP~T~eAd--~iL~~kG 170 (254)
T cd05313 93 EVRRGRVSEYAKKYGTAKYFEGKKPWEVPCDIAFPCATQNEVDAEDAKLLVKNGCKYVAEGANMPCTAEAI--EVFRQAG 170 (254)
T ss_pred HHCCCCCHHHHHCCCCCEECCCCCHHHCCCCEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCHHHH--HHHHHCC
T ss_conf 74687102444138985663897513304769974354667899999999967982998658899987899--9999889
Q ss_pred CEEE
Q ss_conf 8798
Q gi|254780137|r 318 DAMI 321 (779)
Q Consensus 318 ~aiv 321 (779)
-.++
T Consensus 171 I~vi 174 (254)
T cd05313 171 VLFA 174 (254)
T ss_pred CEEE
T ss_conf 8896
No 61
>TIGR01318 gltD_gamma_fam glutamate synthase, small subunit; InterPro: IPR006006 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate. 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including Escherichia coli. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=97.29 E-value=0.00018 Score=49.95 Aligned_cols=80 Identities=34% Similarity=0.596 Sum_probs=57.2
Q ss_pred HHCCCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECC----CEEECCCCC-CCCHHHHHHHHC-----------
Q ss_conf 7098822411787425425678999999819885758999559----603078733-266788977450-----------
Q gi|254780137|r 195 LVGKKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLE----GLVYEGREK-KFDKWKSVYAQK----------- 258 (779)
Q Consensus 195 ~~gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~----Gli~~~r~~-~~~~~~~~~a~~----------- 258 (779)
+.+..-.+-||-|.|||-||+|||+.|.+.|+ ++.++||+ ||||=|=+. .|+ |.-.++-
T Consensus 136 ~S~V~~~g~rVAviGAGPAGLaCAD~L~RaGV---~v~VfDRhP~iGGLLtFGIPsFKLd--K~V~~~Rr~if~~MGi~F 210 (480)
T TIGR01318 136 LSHVKPTGKRVAVIGAGPAGLACADILARAGV---QVVVFDRHPEIGGLLTFGIPSFKLD--KAVLSRRREIFTAMGIEF 210 (480)
T ss_pred CCCCCCCCCEEEEECCCCCHHHHHHHHHHCCC---EEEEEECCCCCCCCCCCCCCCHHHH--HHHHHHHHHHHHHCCCEE
T ss_conf 87730078278997788602579998751785---5999747703076013688851102--789999999997589278
Q ss_pred ---CC---CCCHHHHCCCCC-EEEECCC
Q ss_conf ---88---988888605883-7862578
Q gi|254780137|r 259 ---SG---PKPLSETMNNAD-VFLGLSV 279 (779)
Q Consensus 259 ---~~---~~~l~ea~~~ad-v~iG~S~ 279 (779)
++ .-+|.+.+..=| ||||+..
T Consensus 211 ~Ln~EvGrD~~l~~LLe~YDAVFlGvGT 238 (480)
T TIGR01318 211 KLNTEVGRDISLDDLLEDYDAVFLGVGT 238 (480)
T ss_pred ECCCEEECCCCHHHHHHHCCEEEEECCC
T ss_conf 6581650325554443114848961143
No 62
>PRK09414 glutamate dehydrogenase; Provisional
Probab=97.23 E-value=0.02 Score=35.68 Aligned_cols=181 Identities=17% Similarity=0.193 Sum_probs=109.2
Q ss_pred CCCCEEEEECCCCCHHHHHHH-H----HHHCCCCCEEEHHHCCCCHH-------HHHHHHHHHHHC-CC-CCC-------
Q ss_conf 698526542388988999999-9----87088846062220648015-------799999998718-94-216-------
Q gi|254780137|r 117 AGINVFDIEINAKDVDTMVST-I----VALEPTFGGINLEDIKAPEC-------FEVERILSQKLK-IP-FLH------- 175 (779)
Q Consensus 117 agid~~~i~~~~~d~~e~i~~-v----~~~~p~fg~i~lEDi~~p~~-------f~i~~~l~~~~~-ip-vf~------- 175 (779)
+|||+=|-.......+.|.+. + +.+.|. -||-+|+- =.+...|++..+ .+ |+-
T Consensus 126 GGi~~DPk~~S~~El~R~~r~f~~eL~~~IGp~------~DVPApDigt~~rem~wm~d~Y~~i~~~~~gv~TGKp~~~G 199 (446)
T PRK09414 126 GGSDFDPKGKSDAEIMRFCQSFMTELYRHIGPD------TDVPAGDIGVGGREIGYMFGQYKRLTNRFEGVLTGKGLSFG 199 (446)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC------CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEECCCCCCCC
T ss_conf 651328877999999999999999999860976------69878657877889999999999854987735689972106
Q ss_pred ---CCCCCHHHHHHHHHHHHHHHHCCCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHH
Q ss_conf ---87721899999999999997098822411787425425678999999819885758999559603078733266788
Q gi|254780137|r 176 ---DDQHGTAVTVTAATLNGMKLVGKKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWK 252 (779)
Q Consensus 176 ---DD~qGTa~v~lA~llnAl~~~gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~ 252 (779)
.--+-|+-=+.-.+..+++..|.+++..|+++.|.|-.|...++.+..+|.+ =+-+-|++|-||.. ++++..+
T Consensus 200 Gs~gR~eATG~Gv~y~~~e~l~~~g~~l~gk~v~IqGfGNVg~~aA~~l~e~Gak--vVavSDs~G~Iy~~--~Gid~~~ 275 (446)
T PRK09414 200 GSLIRPEATGYGLVYFAEEMLKARGDSFEGKTVVVSGSGNVAIYAIEKAMELGAK--VVTCSDSSGYVYDE--DGITPEK 275 (446)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCE--EEEEECCCCEEECC--CCCCHHH
T ss_conf 8868765322899999999999749995788799977777999999999976997--99998378607889--9989999
Q ss_pred HHHHHC---CCCCCHH---------------HHC-CCCCEEEECCCCCCCCHHHHHHCCCC--CEEEEECC-CC-CCC
Q ss_conf 977450---8898888---------------860-58837862578877898899721899--77999178-72-009
Q gi|254780137|r 253 SVYAQK---SGPKPLS---------------ETM-NNADVFLGLSVAGALDPAILKFMAEK--PLIMVLAN-PN-PEA 307 (779)
Q Consensus 253 ~~~a~~---~~~~~l~---------------ea~-~~adv~iG~S~~g~~t~e~v~~M~~~--PiIfaLsN-P~-pEi 307 (779)
..+-.+ .....+. +.+ ..+||++=+...+.++++-.+.+-.+ .+|.--|| |+ ||.
T Consensus 276 L~~~~~~k~~~~~~l~~y~~~~~~a~~~~~~~~~~~~cDIliPaA~qn~I~~~nA~~l~a~gck~V~EGAN~P~T~eA 353 (446)
T PRK09414 276 LALLKEIKEVRRGRISEYAEEFPGAEYLEGQKPWSVPCDIALPCATQNELDGEDAKTLIANGVKAVAEGANMPSTPEA 353 (446)
T ss_pred HHHHHHHHHCCCCCCCCHHHCCCCCEECCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCHHH
T ss_conf 999999873379843212213899765388760023554895322257889999999997697699965899989899
No 63
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.20 E-value=0.00097 Score=44.82 Aligned_cols=169 Identities=21% Similarity=0.288 Sum_probs=106.3
Q ss_pred HHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHC-----CCCCEEEHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf 999986269852654238898899999998708-----884606222064801579999999871894216877218999
Q gi|254780137|r 110 AVLFKKFAGINVFDIEINAKDVDTMVSTIVALE-----PTFGGINLEDIKAPECFEVERILSQKLKIPFLHDDQHGTAVT 184 (779)
Q Consensus 110 ~~L~k~~agid~~~i~~~~~d~~e~i~~v~~~~-----p~fg~i~lEDi~~p~~f~i~~~l~~~~~ipvf~DD~qGTa~v 184 (779)
-.||.-.+|+|.+=++- ++|.--||.-+ -.+.|-.|+- --..+|..-++-|.+.+|- .|.-.|
T Consensus 98 ~HLfrVasGLDSmVvGE-----~QIlgQVK~A~~~A~~~g~~g~~L~~-lf~~Ai~~aK~VRteT~I~------~~~vSi 165 (429)
T PRK00045 98 RHLFRVASGLDSMVLGE-----PQILGQVKDAYALAQEAGTVGTILNR-LFQKAFSVAKRVRTETGIG------AGAVSV 165 (429)
T ss_pred HHHHHHHHCCHHHCCCC-----HHHHHHHHHHHHHHHHCCCCHHHHHH-HHHHHHHHHHHHHHHCCCC------CCCCCH
T ss_conf 99999973322210585-----78999999999999882981389999-9999999999998726588------899888
Q ss_pred HHHHHHHHHHHHCCCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHC-----C
Q ss_conf 99999999997098822411787425425678999999819885758999559603078733266788977450-----8
Q gi|254780137|r 185 VTAATLNGMKLVGKKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQK-----S 259 (779)
Q Consensus 185 ~lA~llnAl~~~gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~-----~ 259 (779)
..+++--+-++.| ++++.|+++.|+|.-|.-+++.|.+.|+. +|+++.| +.+|. ..+|.. .
T Consensus 166 ~s~Av~la~~~~~-~l~~~~vlviGaGem~~l~~k~L~~~g~~--~i~v~nR----t~~ra-------~~la~~~~~~~~ 231 (429)
T PRK00045 166 ASAAVELAKKIFG-DLSGKKVLVIGAGEMGELVAKHLAEKGVR--KITVANR----TLERA-------EELAEEFGAEAI 231 (429)
T ss_pred HHHHHHHHHHHCC-CCCCCEEEEECCCHHHHHHHHHHHHCCCC--EEEEECC----CHHHH-------HHHHHHCCCEEE
T ss_conf 9999999998647-81206599976748999999999855998--4999758----67789-------999997598897
Q ss_pred CCCCHHHHCCCCCEEEECCC-C-CCCCHHHHHHCC-C---CC-EEEEECCCC
Q ss_conf 89888886058837862578-8-778988997218-9---97-799917872
Q gi|254780137|r 260 GPKPLSETMNNADVFLGLSV-A-GALDPAILKFMA-E---KP-LIMVLANPN 304 (779)
Q Consensus 260 ~~~~l~ea~~~adv~iG~S~-~-g~~t~e~v~~M~-~---~P-iIfaLsNP~ 304 (779)
+...|.+.+..+||+|.+++ | -++++++++... + +| +++=||+|-
T Consensus 232 ~~~~l~~~l~~~DvvisaT~s~~~ii~~~~~~~~~~~r~~~~~~iiDLavPR 283 (429)
T PRK00045 232 PLEELPEALAEADIVISSTAAPHPIITKGMVERALKQRRHRPLLLIDLAVPR 283 (429)
T ss_pred CHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf 4999999996589999944899750279999999873469956999616887
No 64
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.00 E-value=0.0048 Score=40.05 Aligned_cols=170 Identities=21% Similarity=0.217 Sum_probs=107.1
Q ss_pred HHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCC-----CCCEEEHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHH
Q ss_conf 89999862698526542388988999999987088-----8460622206480157999999987189421687721899
Q gi|254780137|r 109 KAVLFKKFAGINVFDIEINAKDVDTMVSTIVALEP-----TFGGINLEDIKAPECFEVERILSQKLKIPFLHDDQHGTAV 183 (779)
Q Consensus 109 K~~L~k~~agid~~~i~~~~~d~~e~i~~v~~~~p-----~fg~i~lEDi~~p~~f~i~~~l~~~~~ipvf~DD~qGTa~ 183 (779)
=-.||.-.+|+|.+=++- ++|+--||.-+- .+.|-.|+ .--..+|..-+|-|.+.+| -+|...
T Consensus 93 v~HLfrVasGLdS~VlGE-----~qIlgQvK~A~~~A~~~g~~g~~L~-~lfq~A~~~aKrVRteT~I------~~~~vS 160 (311)
T cd05213 93 VRHLFRVASGLDSMVVGE-----TQILGQVKNAYKLAKEAGTSGKLLN-RLFQKAIKVGKRVRTETGI------SRGAVS 160 (311)
T ss_pred HHHHHHHHHCCCHHHCCC-----HHHHHHHHHHHHHHHHCCCCHHHHH-HHHHHHHHHHHHHHHHCCC------CCCCCC
T ss_conf 999999872340010484-----7899999999999998198138999-9999999999988761678------889888
Q ss_pred HHHHHHHHHHHHHCCCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHC-----
Q ss_conf 999999999997098822411787425425678999999819885758999559603078733266788977450-----
Q gi|254780137|r 184 TVTAATLNGMKLVGKKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQK----- 258 (779)
Q Consensus 184 v~lA~llnAl~~~gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~----- 258 (779)
|..+++--+.++-| ++++.|+++.|+|.-|--+++.|...|+. +|+++.| +.+| ...+|..
T Consensus 161 v~~~av~~a~~~~~-~l~~~~vLviGaGem~~l~~~~L~~~g~~--~i~v~nR----t~~r-------a~~la~~~g~~~ 226 (311)
T cd05213 161 ISSAAVELAEKIFG-NLKGKKVLVIGAGEMGELAAKHLAAKGVA--EITIANR----TYER-------AEELAKELGGNA 226 (311)
T ss_pred HHHHHHHHHHHHHC-CCCCCEEEEECCCHHHHHHHHHHHHCCCC--EEEEECC----CHHH-------HHHHHHHCCCEE
T ss_conf 99999999998718-72116799986879999999999965998--2599768----6789-------999999749899
Q ss_pred CCCCCHHHHCCCCCEEEECCC-CC-CCCHHHHHHCC-CCC-EEEEECCCC
Q ss_conf 889888886058837862578-87-78988997218-997-799917872
Q gi|254780137|r 259 SGPKPLSETMNNADVFLGLSV-AG-ALDPAILKFMA-EKP-LIMVLANPN 304 (779)
Q Consensus 259 ~~~~~l~ea~~~adv~iG~S~-~g-~~t~e~v~~M~-~~P-iIfaLsNP~ 304 (779)
.+...+.+.+..+|++|.+++ |. .++.+.+.... .+| +|+=||.|-
T Consensus 227 ~~~~~l~~~l~~~DvvisaT~s~~~~~~~~~~~~~~~~~~~~iiDLavPR 276 (311)
T cd05213 227 VPLDELLELLNEADVVISATGAPHYAKIVERAMKKRSGKPRLIVDLAVPR 276 (311)
T ss_pred ECHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 72999999997689999927999620359999753479976999917999
No 65
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=96.96 E-value=0.036 Score=34.03 Aligned_cols=179 Identities=15% Similarity=0.139 Sum_probs=113.0
Q ss_pred CCCCEEEEECCCCCHHHHHHH-----HHHHCCCCCEEEHHHCCCCHH-------HHHHHHHHHHHCCCCCCCC-------
Q ss_conf 698526542388988999999-----987088846062220648015-------7999999987189421687-------
Q gi|254780137|r 117 AGINVFDIEINAKDVDTMVST-----IVALEPTFGGINLEDIKAPEC-------FEVERILSQKLKIPFLHDD------- 177 (779)
Q Consensus 117 agid~~~i~~~~~d~~e~i~~-----v~~~~p~fg~i~lEDi~~p~~-------f~i~~~l~~~~~ipvf~DD------- 177 (779)
+|+|+=|-.......+.|.+. .+.+.|. -|+-+|+- =++...|++..+ -|.-=
T Consensus 149 GG~~~dPk~~S~~EieR~~r~fm~eL~~~IGp~------~DVPApDiGtg~remgwm~d~Y~~i~~--~~~gvvTGKp~~ 220 (469)
T PTZ00079 149 GGSDFDPKGKSDNEILKFCQSFMTELYRHIGPC------TDVPAGDIGVGGREIGYLYGQYKRLRN--EFNGVLTGKNVK 220 (469)
T ss_pred CCEECCCCCCCHHHHHHHHHHHHHHHHHHCCCC------CCCCCCCCCCCHHHHHHHHHHHHHHCC--CCCEEEECCCCC
T ss_conf 731328989998999999999999999853998------656787677689999999999985058--675177188710
Q ss_pred -------CCCHHHHHHHHHHHHHHHHCCCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCH
Q ss_conf -------7218999999999999970988224117874254256789999998198857589995596030787332667
Q gi|254780137|r 178 -------QHGTAVTVTAATLNGMKLVGKKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDK 250 (779)
Q Consensus 178 -------~qGTa~v~lA~llnAl~~~gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~ 250 (779)
-.-|+-=+.-.+-.+++-.|.+++..|+++.|.|-.|...++.+..+|.+ =+.+-|++|-||.. ++++.
T Consensus 221 ~GGs~gR~eATG~G~vy~~~e~l~~~~~~l~gk~vaIqGfGNVg~~aA~kl~e~Gak--VVavSDs~G~Iy~~--~Gid~ 296 (469)
T PTZ00079 221 WGGSNIRPEATGYGAVYFVEEVLKSLNIVVEKKTAVVSGSGNVAQYCVEKLLQLGAK--VLTLSDSNGYIVEP--NGFTE 296 (469)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCE--EEEEECCCCEEECC--CCCCH
T ss_conf 068678676242889999999998679985788899976673899999999976998--99998389439888--98899
Q ss_pred HHHHHHH---CCCCCCHHH---------------HC-CCCCEEEECCCCCCCCHHHHHHCCC--CCEEEEECC-CC-CCC
Q ss_conf 8897745---088988888---------------60-5883786257887789889972189--977999178-72-009
Q gi|254780137|r 251 WKSVYAQ---KSGPKPLSE---------------TM-NNADVFLGLSVAGALDPAILKFMAE--KPLIMVLAN-PN-PEA 307 (779)
Q Consensus 251 ~~~~~a~---~~~~~~l~e---------------a~-~~adv~iG~S~~g~~t~e~v~~M~~--~PiIfaLsN-P~-pEi 307 (779)
.+..+.. ....+.+.+ .+ ..+||++=+...+.++++-.+.+.+ -.+|.-.|| |+ ||.
T Consensus 297 e~l~~~~~~k~~~~g~l~~y~~~~~~a~~~~~~~~w~~~cDIliPcA~qneI~~~nA~~l~~~g~k~V~EGAN~P~T~eA 376 (469)
T PTZ00079 297 EKLAHLMELKNEKRGRIKEYLKHSSTAKYFENEKPWEVPCDLAFPCATQNEINLDDAKLLVKNGCKLVGEGANMPSTVEA 376 (469)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHCCCCCEECCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCHHH
T ss_conf 99999999985116634456533887045589862246676996555557878899999984886699967899989899
No 66
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=96.96 E-value=0.0026 Score=41.90 Aligned_cols=89 Identities=20% Similarity=0.258 Sum_probs=62.8
Q ss_pred HHHHHHHHHHCCCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCCCCCCHHH
Q ss_conf 99999999709882241178742542567899999981988575899955960307873326678897745088988888
Q gi|254780137|r 187 AATLNGMKLVGKKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKSGPKPLSE 266 (779)
Q Consensus 187 A~llnAl~~~gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~~~~~l~e 266 (779)
.|++.+++-.+.+++.-++++.|+|.|+-+++--|...|.+ +|++++| +..|...+.......-.......+.+
T Consensus 4 ~Gf~~~l~~~~~~~~~k~vlIlGaGGaarai~~aL~~~g~~--~I~i~nR----~~~r~~~l~~~~~~~~~~~~~~~~~~ 77 (155)
T cd01065 4 LGFVRALEEAGIELKGKKVLILGAGGAARAVAYALAELGAA--KIVIVNR----TLEKAKALAERFGELGIAIAYLDLEE 77 (155)
T ss_pred HHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCC--EEEEEEC----CHHHHHHHHHHHHHCCCCEEECCHHH
T ss_conf 99999999729985799999986758999999999971998--2288608----99999999998501366401045344
Q ss_pred HCCCCCEEEECCCCC
Q ss_conf 605883786257887
Q gi|254780137|r 267 TMNNADVFLGLSVAG 281 (779)
Q Consensus 267 a~~~adv~iG~S~~g 281 (779)
.....|++|.++--|
T Consensus 78 ~~~~~dliIN~tp~G 92 (155)
T cd01065 78 LLAEADLIINTTPVG 92 (155)
T ss_pred HHCCCCEEEECCCCC
T ss_conf 315688798767787
No 67
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=96.96 E-value=0.023 Score=35.33 Aligned_cols=208 Identities=15% Similarity=0.197 Sum_probs=128.0
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCC--CCCEEEHHHCCCCHHHHHHHHHHHHHCCCCCCCCCC---CHH
Q ss_conf 089999862698526542388988999999987088--846062220648015799999998718942168772---189
Q gi|254780137|r 108 GKAVLFKKFAGINVFDIEINAKDVDTMVSTIVALEP--TFGGINLEDIKAPECFEVERILSQKLKIPFLHDDQH---GTA 182 (779)
Q Consensus 108 GK~~L~k~~agid~~~i~~~~~d~~e~i~~v~~~~p--~fg~i~lEDi~~p~~f~i~~~l~~~~~ipvf~DD~q---GTa 182 (779)
.+--|.+...|.|++=|--.++=..|+++....+.- .| |+-+..|- ++.+++ ..|+|||---- .+|
T Consensus 43 ~~eeL~~~i~~~d~liiRS~t~vt~~vi~~a~~Lk~I~r~-GvG~dnID-------l~aa~~-~GI~V~NtPg~Na~aVA 113 (409)
T PRK11790 43 DEEELKEAIKDAHFIGIRSRTQLTEEVLEAAEKLVAIGCF-CIGTNQVD-------LDAAAK-RGIPVFNAPFSNTRSVA 113 (409)
T ss_pred CHHHHHHHHCCCCEEEECCCCCCCHHHHHCCCCCEEEEEC-CCCCCCCC-------HHHHHH-CCCEEEECCCCCCHHHH
T ss_conf 9999999856798999917987399999439997199983-21577408-------999986-99489969997728899
Q ss_pred HHHHHHHHHHHHHH---------C---------CCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCC
Q ss_conf 99999999999970---------9---------88224117874254256789999998198857589995596030787
Q gi|254780137|r 183 VTVTAATLNGMKLV---------G---------KKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGR 244 (779)
Q Consensus 183 ~v~lA~llnAl~~~---------g---------k~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r 244 (779)
=.+++.+|...|-. | ..+..-++-+.|-|.=|-.++++...+|+ +++..|.. .+
T Consensus 114 El~i~l~L~l~R~i~~~~~~~~~G~W~k~~~~~~El~GKtlGIIG~G~IG~~VA~~a~~fGm---~Vi~yD~~-----~~ 185 (409)
T PRK11790 114 ELVLGEIILLLRGIPEKNAKAHRGGWNKSAAGSFEVRGKTLGIVGYGHIGTQLSVLAESLGM---RVIFYDIE-----DK 185 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCEEEEECCCHHHHHHHHHHHHCCC---EEEEECCH-----HH
T ss_conf 99999999998647999999982998756777556358789863675476999999987699---89997860-----21
Q ss_pred CCCCCHHHHHHHHCCCCCCHHHHCCCCCEEEE-C----CCCCCCCHHHHHHCCCCCEEEEECCCCCCCCHH-HHHHHCCC
Q ss_conf 33266788977450889888886058837862-5----788778988997218997799917872009988-99851898
Q gi|254780137|r 245 EKKFDKWKSVYAQKSGPKPLSETMNNADVFLG-L----SVAGALDPAILKFMAEKPLIMVLANPNPEAMPD-EIKKVRPD 318 (779)
Q Consensus 245 ~~~~~~~~~~~a~~~~~~~l~ea~~~adv~iG-~----S~~g~~t~e~v~~M~~~PiIfaLsNP~pEi~p~-~a~~~~g~ 318 (779)
+ .........+|.|.++.+|++.- + +..+.+.++.++.|-+..++.=.|--.= +.-+ .+..-...
T Consensus 186 ---~-----~~~~~~~~~sl~ell~~sD~IslH~Plt~~T~~lIn~~~l~~MK~ga~LIN~ARG~i-VDe~AL~~AL~~g 256 (409)
T PRK11790 186 ---L-----PLGNATQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTV-VDIDALADALKSG 256 (409)
T ss_pred ---C-----CCCCCEECCCHHHHHHHCCEEEECCCCCHHHHCCCCHHHHHHCCCCCEEEECCCCHH-CCHHHHHHHHHCC
T ss_conf ---2-----566846748899998759999982679846631043999972699989998688510-3999999999739
Q ss_pred EEECCCCCC-CCC--------------CCCHHHHHHHHH
Q ss_conf 798058878-877--------------435034556654
Q gi|254780137|r 319 AMICTGRSD-FSN--------------QVNNVLCFPYIF 342 (779)
Q Consensus 319 aivatGrs~-~pn--------------Q~NN~l~FPgif 342 (779)
-|-+-| .| ||. +..|+++.|-||
T Consensus 257 ~I~gAa-lDVf~~EP~~~~~~~~s~L~~~~NVilTPHiG 294 (409)
T PRK11790 257 HLAGAA-IDVFPVEPKSNGDPFESPLRGLDNVILTPHIG 294 (409)
T ss_pred CCCEEE-ECCCCCCCCCCCCCCCCHHHCCCCEEECCCCC
T ss_conf 930899-74789998987874324344499765638777
No 68
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=96.91 E-value=0.0032 Score=41.27 Aligned_cols=168 Identities=12% Similarity=0.155 Sum_probs=104.0
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCC-----CCCEEEHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCHH
Q ss_conf 089999862698526542388988999999987088-----846062220648015799999998718942168772189
Q gi|254780137|r 108 GKAVLFKKFAGINVFDIEINAKDVDTMVSTIVALEP-----TFGGINLEDIKAPECFEVERILSQKLKIPFLHDDQHGTA 182 (779)
Q Consensus 108 GK~~L~k~~agid~~~i~~~~~d~~e~i~~v~~~~p-----~fg~i~lEDi~~p~~f~i~~~l~~~~~ipvf~DD~qGTa 182 (779)
.=-.||.-.+|+|.+=++- ++|.--||.-+- ...|-.|+- --..+|..-+|-|.+.+| -+|.-
T Consensus 95 Av~HLfrVasGLDSmVvGE-----~QIlGQVK~A~~~A~~~g~~g~~L~~-lf~~A~~~aKrVrteT~I------~~~~v 162 (414)
T PRK13940 95 VIMHLMKLACGLESMVLGE-----PQILGQVKDSYTLSKKNHAIGKELDR-VFQKVFATAKRVRSETRI------GHCPV 162 (414)
T ss_pred HHHHHHHHHCCCHHHHCCC-----HHHHHHHHHHHHHHHHCCCCHHHHHH-HHHHHHHHHHHHHHHCCC------CCCCC
T ss_conf 9999999861341142483-----88999999999999983993589999-999999987788762345------88888
Q ss_pred HHHHHHHHHHHHHHCCCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCC---
Q ss_conf 99999999999970988224117874254256789999998198857589995596030787332667889774508---
Q gi|254780137|r 183 VTVTAATLNGMKLVGKKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKS--- 259 (779)
Q Consensus 183 ~v~lA~llnAl~~~gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~--- 259 (779)
.|..+++-=|-+.. .++++.++++.|||..|--+++.|...|+. +|++++| +.+|. ..+|..-
T Consensus 163 Sv~~~Av~la~~~~-~~l~~~~vlvvGaGem~~l~~k~L~~~g~~--~i~v~nR----t~~ra-------~~la~~~~~~ 228 (414)
T PRK13940 163 SVAFSAITLAKRQL-DNISSKNVLIIGAGQTGELLFRHVTALAPK--QIMLANR----TIEKA-------QKITSAFRNA 228 (414)
T ss_pred CHHHHHHHHHHHHC-CCCCCCEEEEECCCHHHHHHHHHHHHCCCC--EEEEECC----CHHHH-------HHHHHHHCCC
T ss_conf 88999999999862-871228389966864789999999976998--7999457----56779-------9999970888
Q ss_pred ---CCCCHHHHCCCCCEEEECCC-C-CCCCHHHHHHCCCCC-EEEEECCCC
Q ss_conf ---89888886058837862578-8-778988997218997-799917872
Q gi|254780137|r 260 ---GPKPLSETMNNADVFLGLSV-A-GALDPAILKFMAEKP-LIMVLANPN 304 (779)
Q Consensus 260 ---~~~~l~ea~~~adv~iG~S~-~-g~~t~e~v~~M~~~P-iIfaLsNP~ 304 (779)
....|.+.+..+|++|.+++ + -+++.++++ .+| +++=||.|-
T Consensus 229 ~~~~~~~l~~~l~~aDivisaT~a~~~ii~~~~~~---~~p~~~iDLavPR 276 (414)
T PRK13940 229 SAHYLSELPQLIKKADIIIAAVNVLEYIVTCKYVG---DKPRVFIDISIPQ 276 (414)
T ss_pred CCCCHHHHHHHHHHCCEEEEECCCCHHHCCHHHHC---CCCEEEEEECCCC
T ss_conf 50169999999863887998169824440486645---7975899845888
No 69
>TIGR01035 hemA glutamyl-tRNA reductase; InterPro: IPR000343 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway . The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin . The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) . This entry represents glutamyl-tRNA reductase (1.2.1.70 from EC), which reduces glutamyl-tRNA to glutamate-1-semialdehyde during the first stage of tetrapyrrole biosynthesis by the C5 pathway , . This enzyme required NADPH as a coenzyme.; GO: 0008883 glutamyl-tRNA reductase activity, 0050661 NADP binding, 0033014 tetrapyrrole biosynthetic process.
Probab=96.69 E-value=0.0048 Score=40.03 Aligned_cols=169 Identities=19% Similarity=0.273 Sum_probs=112.5
Q ss_pred HHHHHHCCCCEEEEECCCCCHHHHHHHHHH-----HCCCCCEEEHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 999862698526542388988999999987-----088846062220648015799999998718942168772189999
Q gi|254780137|r 111 VLFKKFAGINVFDIEINAKDVDTMVSTIVA-----LEPTFGGINLEDIKAPECFEVERILSQKLKIPFLHDDQHGTAVTV 185 (779)
Q Consensus 111 ~L~k~~agid~~~i~~~~~d~~e~i~~v~~-----~~p~fg~i~lEDi~~p~~f~i~~~l~~~~~ipvf~DD~qGTa~v~ 185 (779)
.||+-+.|+|.+=|+=+ .|.-=||. -+-.+-|=-||-+- ..+|..=+|-|.+.+| =.|-..|+
T Consensus 100 HLfrVAsGLdS~V~GE~-----QILGQvk~ay~~a~~~~~~g~~L~rl~-~kA~~vgkRVR~ET~I------~~~aVSvs 167 (436)
T TIGR01035 100 HLFRVASGLDSMVVGET-----QILGQVKNAYKVAQEEKTVGKVLERLF-KKALSVGKRVRTETDI------SKGAVSVS 167 (436)
T ss_pred HHHHHHCCCCCCCCCCH-----HHHHHHHHHHHHHHHCCCCHHHHHHHH-HHHHHHHHHHCCCCCC------CCCCCCHH
T ss_conf 99998512122010311-----288899999999873587106899999-9998773542120466------88850012
Q ss_pred HHHHHHHHHHHCC-CHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHC------
Q ss_conf 9999999997098-822411787425425678999999819885758999559603078733266788977450------
Q gi|254780137|r 186 TAATLNGMKLVGK-KFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQK------ 258 (779)
Q Consensus 186 lA~llnAl~~~gk-~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~------ 258 (779)
.||+-=|.|+-|. .|++.++++.|||.-|.=.++.|...|+. .+.+.+| |..|. +.+|+.
T Consensus 168 sAAVelA~~ifG~erL~~~~~LliGAGeMg~Lva~~L~~~~v~--~~~i~NR----t~~rA-------~~LA~e~~~P~~ 234 (436)
T TIGR01035 168 SAAVELAEKIFGSERLKGKKVLLIGAGEMGELVAKHLREKGVG--KVLIANR----TYERA-------EKLAKELGGPEA 234 (436)
T ss_pred HHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCC--EEEEECC----CHHHH-------HHHHHHCCCCCC
T ss_conf 7777899987256211664189982745799999999648952--8988556----77899-------999987078664
Q ss_pred CCCC-----CHHHHCCCCCEEEECCC-C-CCCCHHHHHHC-CC-------CC-EEEEECCCC
Q ss_conf 8898-----88886058837862578-8-77898899721-89-------97-799917872
Q gi|254780137|r 259 SGPK-----PLSETMNNADVFLGLSV-A-GALDPAILKFM-AE-------KP-LIMVLANPN 304 (779)
Q Consensus 259 ~~~~-----~l~ea~~~adv~iG~S~-~-g~~t~e~v~~M-~~-------~P-iIfaLsNP~ 304 (779)
-... .|.+++.-+||+|-+++ | -+++.+|++.- .. +| +|+=+|+|=
T Consensus 235 ~~f~~La~~~L~~~L~~~DivissTgA~~pi~~~~~~e~a~~~Rr~de~~~pl~~~DIAvPR 296 (436)
T TIGR01035 235 VKFEALALEKLEEALAEADIVISSTGAPEPIVSKEDVERALKERRRDEAARPLFIVDIAVPR 296 (436)
T ss_pred CCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCC
T ss_conf 54445548999999742889998557653100203489999972220015886999758899
No 70
>pfam00670 AdoHcyase_NAD S-adenosyl-L-homocysteine hydrolase, NAD binding domain.
Probab=96.61 E-value=0.025 Score=35.05 Aligned_cols=114 Identities=17% Similarity=0.189 Sum_probs=89.0
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHH
Q ss_conf 72189999999999999709882241178742542567899999981988575899955960307873326678897745
Q gi|254780137|r 178 QHGTAVTVTAATLNGMKLVGKKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQ 257 (779)
Q Consensus 178 ~qGTa~v~lA~llnAl~~~gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~ 257 (779)
.+||+--++-|++. .|+.-+.--++|+.|-|--|-|||..+..+|. ++++++. +|.++.-|.
T Consensus 2 ~yGtgqS~~d~i~r---~tn~llaGk~vvV~GYG~~GkGvA~~~rg~Ga---~V~V~Ev------------DPi~aleA~ 63 (162)
T pfam00670 2 LYGCRESLIDGIKR---ATDVMIAGKVAVVCGYGDVGKGCAASLKGQGA---RVIVTEI------------DPICALQAA 63 (162)
T ss_pred CCCCCCCHHHHHHH---HHCCEECCCEEEEECCCCCCHHHHHHHHCCCC---EEEEEEC------------CCHHHHHHH
T ss_conf 66442028999988---61765748789996787667779998622999---8999947------------930699998
Q ss_pred CCC--CCCHHHHCCCCCEEEECCC-CCCCCHHHHHHCCCCCEEEEECCCC---CCCCHHHH
Q ss_conf 088--9888886058837862578-8778988997218997799917872---00998899
Q gi|254780137|r 258 KSG--PKPLSETMNNADVFLGLSV-AGALDPAILKFMAEKPLIMVLANPN---PEAMPDEI 312 (779)
Q Consensus 258 ~~~--~~~l~ea~~~adv~iG~S~-~g~~t~e~v~~M~~~PiIfaLsNP~---pEi~p~~a 312 (779)
-.. -.++.|+++.+|+|+.+++ .++++.|..+.|....| |+|-. -||.-+..
T Consensus 64 mdGf~V~~~~ea~~~aDi~VTaTG~~~vi~~eh~~~mKdgaI---laN~GHfd~EIdv~~L 121 (162)
T pfam00670 64 MEGFQVVTLEEVVKKADIFVTTTGNKDIITGEHMAKMKNDAI---VCNIGHFDNEIDVAWL 121 (162)
T ss_pred HCCCCCCCHHHHHHCCCEEEECCCCCCCCCHHHHHHHCCCEE---EECCCCCCCEEEHHHH
T ss_conf 649954788898604999999248977473999998448869---9877756522728888
No 71
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=96.54 E-value=0.071 Score=31.94 Aligned_cols=125 Identities=16% Similarity=0.167 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHH--CCCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHC
Q ss_conf 8999999999999970--98822411787425425678999999819885758999559603078733266788977450
Q gi|254780137|r 181 TAVTVTAATLNGMKLV--GKKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQK 258 (779)
Q Consensus 181 Ta~v~lA~llnAl~~~--gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~ 258 (779)
||-=+.-++..+++.. +.+|+..||++.|.|.-|...+++|...|. +++..|-+ +.+...+..
T Consensus 5 Ta~GV~~~~~~~~~~~~g~~~l~gk~VaIqG~GnVG~~~A~~l~~~Ga---kvvv~d~~------------~~~~~~~~~ 69 (200)
T cd01075 5 TAYGVFLGMKAAAEHLLGTDSLEGKTVAVQGLGKVGYKLAEHLLEEGA---KLIVADIN------------EEAVARAAE 69 (200)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCC---EEEEEECC------------HHHHHHHHH
T ss_conf 389999999999998309998789999998987999999999996799---79998268------------899999985
Q ss_pred -CC--CCCHHHHCC-CCCEEEECCCCCCCCHHHHHHCCCCCEEEEECCC-CCCCCHHHHHHHCCCEEE
Q ss_conf -88--988888605-8837862578877898899721899779991787-200998899851898798
Q gi|254780137|r 259 -SG--PKPLSETMN-NADVFLGLSVAGALDPAILKFMAEKPLIMVLANP-NPEAMPDEIKKVRPDAMI 321 (779)
Q Consensus 259 -~~--~~~l~ea~~-~adv~iG~S~~g~~t~e~v~~M~~~PiIfaLsNP-~pEi~p~~a~~~~g~aiv 321 (779)
.. ..+-.+.+. .+|||+=+..+|.++++-+....-+=|+=+=-|| |++- .++....+|-.++
T Consensus 70 ~~~~~~~~~~~~~~~~~DIl~PcA~~~~i~~~~a~~i~ak~I~e~AN~p~t~~~-~~~~L~~rgI~~i 136 (200)
T cd01075 70 LFGATVVAPEEIYSVDADVFAPCALGGVINDDTIPQLKAKAIAGAANNQLADPR-HGQMLHERGILYA 136 (200)
T ss_pred CCCCEEECCHHHHCCCCCEEEECCCCCCCCHHHHHHCCCCEEEECCCCCCCCHH-HHHHHHHCCEEEE
T ss_conf 689889373323227776886514115468999987089699735679999978-9999985992996
No 72
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=96.52 E-value=0.013 Score=37.07 Aligned_cols=185 Identities=19% Similarity=0.218 Sum_probs=97.0
Q ss_pred ECCCCEECCC-CCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHC-CCCCEEEHHH-CCCCHHHHH
Q ss_conf 8178500254-220510583001008999986269852654238898899999998708-8846062220-648015799
Q gi|254780137|r 85 VSNGSAVLGL-GDIGPLASKPVMEGKAVLFKKFAGINVFDIEINAKDVDTMVSTIVALE-PTFGGINLED-IKAPECFEV 161 (779)
Q Consensus 85 vtdGt~vLGL-GdiG~~a~~pvmeGK~~L~k~~agid~~~i~~~~~d~~e~i~~v~~~~-p~fg~i~lED-i~~p~~f~i 161 (779)
||--|+++|| |+==.+---|+| --..|++ .|+|+.-..++. ++++|-++++.+. +.|.|.|.-= +| ..++..
T Consensus 3 i~~~t~l~gliG~PI~HSlSP~i--hn~~f~~-~gl~~~Y~~~~v-~~~~l~~~~~~l~~~~~~G~nVTiP~K-~~~~~~ 77 (288)
T PRK12749 3 VTAKYELIGLMAYPIRHSLSPEM--QNKALEK-AGLPFTYMAFEV-DNDSFPGAIEGLKALKMRGTGVSMPNK-QLACEY 77 (288)
T ss_pred CCCCEEEEEEECCCCCCCCCHHH--HHHHHHH-CCCCEEEEEEEC-CHHHHHHHHHHHHHCCCCEEEEHHHHH-HHHHHH
T ss_conf 57865699995278110317999--9999998-699819998877-888899999998757998999706229-999988
Q ss_pred HHHHHHH------HCCCCCCCC-CCCHHHHHHHHHHHHHHHHCCCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 9999987------189421687-721899999999999997098822411787425425678999999819885758999
Q gi|254780137|r 162 ERILSQK------LKIPFLHDD-QHGTAVTVTAATLNGMKLVGKKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVY 234 (779)
Q Consensus 162 ~~~l~~~------~~ipvf~DD-~qGTa~v~lA~llnAl~~~gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~ 234 (779)
.+.+.++ .|--++.|. .+|.- .=..|++++++-.+.++++.++++.|||.|+-+++-.+...|++ +++++
T Consensus 78 ~D~l~~~A~~igAvNTi~~~~g~l~G~N-TD~~G~~~~l~~~~~~~~~k~~lIlGaGGaa~Ai~~~l~~~g~~--~i~i~ 154 (288)
T PRK12749 78 VDELTPAAKLVGAINTIVNDDGYLRGYN-TDGTGHIRAIKESGFDIKGKTMVLLGAGGASTAIGAQGAIEGLK--EIKLF 154 (288)
T ss_pred HCCCCHHHHHHHCEEEEEEECCEEEEEE-CCCHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCC--EEEEE
T ss_conf 4431488997403448992299899994-77089999999809985677689982345889999999976998--79999
Q ss_pred ECCCEEECCCCCCCCHHHHHHHHCC----------CCCCHHHHCCCCCEEEECCCCC
Q ss_conf 5596030787332667889774508----------8988888605883786257887
Q gi|254780137|r 235 DLEGLVYEGREKKFDKWKSVYAQKS----------GPKPLSETMNNADVFLGLSVAG 281 (779)
Q Consensus 235 D~~Gli~~~r~~~~~~~~~~~a~~~----------~~~~l~ea~~~adv~iG~S~~g 281 (779)
+|. ..+.+......+.+.... +...+.+.+..+|++|-++--|
T Consensus 155 nR~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dliiN~Tp~G 207 (288)
T PRK12749 155 NRR----DEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADILTNGTKVG 207 (288)
T ss_pred ECC----HHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHCCCCEEECCCCCC
T ss_conf 688----55789999999986322575577434101456776513465552364577
No 73
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=96.45 E-value=0.068 Score=32.07 Aligned_cols=225 Identities=16% Similarity=0.178 Sum_probs=136.1
Q ss_pred CEEEEEEECCCCCHHHHHHH--HCCHHH------HHHHHHHHHHHHHHHHHCCCCEEEEECCCCEECCCCCCCCCCCCCH
Q ss_conf 72799850434885572143--073057------9999999889988875135847999817850025422051058300
Q gi|254780137|r 34 GKLEVNATKMLNDQKDLSLA--YSPGVA------APSMMIAEDPSKAAMYTNRSNLVAVVSNGSAVLGLGDIGPLASKPV 105 (779)
Q Consensus 34 gk~~~~~~~~~~~~~dl~~~--ytpgva------~~~~~i~~~~~~~~~~t~~~n~vaVvtdGt~vLGLGdiG~~a~~pv 105 (779)
-.+...+.-|+.||+|-+-| -.+|+- +--.|-+++-+.+++ ++-| .+|-||.-..-+=-
T Consensus 70 AeV~~a~cNplSTqD~vaaAl~~~~GipVfA~kGe~~eeY~~~~~~vl~--~~p~--iiiDDG~D~~~~vh--------- 136 (420)
T COG0499 70 AEVRWASCNPLSTQDDVAAALAAKEGIPVFAWKGETLEEYYEAIDQVLD--WEPN--IIIDDGGDLTKLVH--------- 136 (420)
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHC--CCCC--EEEECCCCEEEEEE---------
T ss_conf 5699852788766678999987505961799707878999999999956--5998--79824732021000---------
Q ss_pred HHHHHHHHHHHCCCCEEEEECCC-CCHHHHHHHHHHHCCCCCEEEHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf 10089999862698526542388-98899999998708884606222064801579999999871894216877218999
Q gi|254780137|r 106 MEGKAVLFKKFAGINVFDIEINA-KDVDTMVSTIVALEPTFGGINLEDIKAPECFEVERILSQKLKIPFLHDDQHGTAVT 184 (779)
Q Consensus 106 meGK~~L~k~~agid~~~i~~~~-~d~~e~i~~v~~~~p~fg~i~lEDi~~p~~f~i~~~l~~~~~ipvf~DD~qGTa~v 184 (779)
++--.|+...-|+ +-.| +-...+-.--+.=.-.|..||.-|=- . + -+.|.-+||+--
T Consensus 137 -~~~~~l~~~i~G~-----tEETTTGV~RL~am~~~G~L~fPai~VNDs~----------t-K-----~~FDNrYGtgqS 194 (420)
T COG0499 137 -LERPELLDAIKGG-----TEETTTGVHRLRAMEKDGVLKFPAINVNDSV----------T-K-----SLFDNRYGTGQS 194 (420)
T ss_pred -CCCHHHHHHHCCC-----CCCCCHHHHHHHHHHHCCCCCCCEEEECCHH----------H-H-----CCCCCCCCCCHH
T ss_conf -0548788774287-----7534228999998976697323558604344----------4-1-----314566564124
Q ss_pred HHHHHHHHHHHHCCCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCCCC--C
Q ss_conf 99999999997098822411787425425678999999819885758999559603078733266788977450889--8
Q gi|254780137|r 185 VTAATLNGMKLVGKKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKSGP--K 262 (779)
Q Consensus 185 ~lA~llnAl~~~gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~~~--~ 262 (779)
++-|++.|.. .-+.--.+|+.|-|--|-|||..+..+|+ ++++.+ .+|.++.-|.-... .
T Consensus 195 ~~DgI~RaTn---~liaGK~vVV~GYG~vGrG~A~~~rg~GA---~ViVtE------------vDPI~AleA~MdGf~V~ 256 (420)
T COG0499 195 LLDGILRATN---VLLAGKNVVVAGYGWVGRGIAMRLRGMGA---RVIVTE------------VDPIRALEAAMDGFRVM 256 (420)
T ss_pred HHHHHHHHHC---EEECCCEEEEECCCCCCHHHHHHHHCCCC---EEEEEE------------CCCHHHHHHHHCCCEEE
T ss_conf 8999986420---01148669996356443669998622898---699982------------48178899863571887
Q ss_pred CHHHHCCCCCEEEECCC-CCCCCHHHHHHCCCCCEEEEECCCCCCCCHHH
Q ss_conf 88886058837862578-87789889972189977999178720099889
Q gi|254780137|r 263 PLSETMNNADVFLGLSV-AGALDPAILKFMAEKPLIMVLANPNPEAMPDE 311 (779)
Q Consensus 263 ~l~ea~~~adv~iG~S~-~g~~t~e~v~~M~~~PiIfaLsNP~pEi~p~~ 311 (779)
++.||.+-+|+||.+++ .++++.|..+.|-+..|+--...=+-||....
T Consensus 257 ~m~~Aa~~gDifiT~TGnkdVi~~eh~~~MkDgaIl~N~GHFd~EI~~~~ 306 (420)
T COG0499 257 TMEEAAKTGDIFVTATGNKDVIRKEHFEKMKDGAILANAGHFDVEIDVAG 306 (420)
T ss_pred EHHHHHHCCCEEEECCCCCCCCCHHHHHHCCCCEEEECCCCCCEEECHHH
T ss_conf 86674421898998668857578999972648849962656400006888
No 74
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=96.38 E-value=0.041 Score=33.59 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=17.2
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHCCC
Q ss_conf 985265423889889999999870888
Q gi|254780137|r 118 GINVFDIEINAKDVDTMVSTIVALEPT 144 (779)
Q Consensus 118 gid~~~i~~~~~d~~e~i~~v~~~~p~ 144 (779)
|.|-+||+++ -|+++++.++...|.
T Consensus 79 g~~yvDlEl~--~~~~~l~~i~~~~~~ 103 (477)
T PRK09310 79 QPKYLDIDKD--FPKEALQTIRKLHPK 103 (477)
T ss_pred CCCEEEEECC--CCHHHHHHHHHCCCC
T ss_conf 9989998656--868899999960899
No 75
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.37 E-value=0.09 Score=31.26 Aligned_cols=154 Identities=16% Similarity=0.163 Sum_probs=92.2
Q ss_pred HHCCCCEEEEECCCC-CHHHHHHHHHHH--CCCCCEE--EH---HHCCCCHHHHHHHHHHHHHCCCCCCC--------CC
Q ss_conf 626985265423889-889999999870--8884606--22---20648015799999998718942168--------77
Q gi|254780137|r 115 KFAGINVFDIEINAK-DVDTMVSTIVAL--EPTFGGI--NL---EDIKAPECFEVERILSQKLKIPFLHD--------DQ 178 (779)
Q Consensus 115 ~~agid~~~i~~~~~-d~~e~i~~v~~~--~p~fg~i--~l---EDi~~p~~f~i~~~l~~~~~ipvf~D--------D~ 178 (779)
.-.||.+.-+.+... +.+|+++.++.+ -|+.-|| || ..+.. .++.+...-.-|+=-||. +.
T Consensus 59 ~~~Gi~~~~~~l~~~~s~~el~~~I~~LN~d~~V~GIiVQlPLP~~id~---~~i~~~I~p~KDVDGl~~~N~G~L~~~~ 135 (288)
T PRK10792 59 EEVGFVSRSYDLPETTSEAELLALIDTLNADNTIDGILVQLPLPAGIDN---VKVLERIHPDKDVDGFHPYNVGRLCQRA 135 (288)
T ss_pred HHCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCH---HHHHHHCCCCCCCCCCCHHHHHHHCCCC
T ss_conf 9759979998668899999999999999679987863783689988577---9998514988898879988998770699
Q ss_pred CCHHHHHHHHHHHHHHHHCCCHHHCEEEEECCCHH-HHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHH
Q ss_conf 21899999999999997098822411787425425-67899999981988575899955960307873326678897745
Q gi|254780137|r 179 HGTAVTVTAATLNGMKLVGKKFSDIKIVTLGAGAA-ALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQ 257 (779)
Q Consensus 179 qGTa~v~lA~llnAl~~~gk~l~~~~iv~~GaGaA-g~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~ 257 (779)
.+-.-.+..|++-=|+-.+-+++..++|+.|.+-- |.-.+.||...++ .+.+|.|+ +
T Consensus 136 ~~~~PcTp~av~~lL~~y~i~~~Gk~vvVvGrS~iVGkPla~lL~~~~a---tVTichs~-------T------------ 193 (288)
T PRK10792 136 PRLRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGC---TTTVTHRF-------T------------ 193 (288)
T ss_pred CCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHCCC---EEEEECCC-------C------------
T ss_conf 8667871999999999747563788899956766343899999986699---59862578-------8------------
Q ss_pred CCCCCCHHHHCCCCCEEEECCC-CCCCCHHHHHHCCCCCEEEEE
Q ss_conf 0889888886058837862578-877898899721899779991
Q gi|254780137|r 258 KSGPKPLSETMNNADVFLGLSV-AGALDPAILKFMAEKPLIMVL 300 (779)
Q Consensus 258 ~~~~~~l~ea~~~adv~iG~S~-~g~~t~e~v~~M~~~PiIfaL 300 (779)
..|.+..+.||+++-..+ |+.+|.|||+ +..||.=.
T Consensus 194 ----~nl~~~~~~ADIvIsA~G~p~~i~~d~vk---~gaiVIDv 230 (288)
T PRK10792 194 ----KNLRHHVENADLLIVAVGKPGFIPGEWIK---EGAIVIDV 230 (288)
T ss_pred ----CCHHHHHHHCCEEEEECCCCCCCCHHHCC---CCCEEEEE
T ss_conf ----78899998578976404886756888828---98589980
No 76
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.37 E-value=0.035 Score=34.10 Aligned_cols=119 Identities=19% Similarity=0.243 Sum_probs=73.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCCCC-CCHHHHCCCCCEEEECCC--
Q ss_conf 11787425425678999999819885758999559603078733266788977450889-888886058837862578--
Q gi|254780137|r 203 IKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKSGP-KPLSETMNNADVFLGLSV-- 279 (779)
Q Consensus 203 ~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~~~-~~l~ea~~~adv~iG~S~-- 279 (779)
.||.+.|||.=|..++-++...+.. ..+.++|.+.-...+...+|++-. .|...+.. ..-.+.++++||.+=+.+
T Consensus 1 mKI~IIGaG~VG~~~A~~l~~~~l~-~el~L~Di~~~~a~g~a~DL~~a~-~~~~~~~i~~~~~~~l~daDvVVitaG~~ 78 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLA-SEIVLVDINKAKAEGEAMDLAHGT-PFVKPVRIYAGDYADCKGADVVVITAGAN 78 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCC-CEEEEEECCCCCCHHHHHHHHHHC-CCCCCCEEEECCHHHHCCCCEEEECCCCC
T ss_conf 9799999488899999999867998-879999188984512568766241-03688168409999977999999899999
Q ss_pred --CCCCC------------HHHHHHC---CCCCEEEEECCCCCCCCHHHHHHH--CCCEEECCC
Q ss_conf --87789------------8899721---899779991787200998899851--898798058
Q gi|254780137|r 280 --AGALD------------PAILKFM---AEKPLIMVLANPNPEAMPDEIKKV--RPDAMICTG 324 (779)
Q Consensus 280 --~g~~t------------~e~v~~M---~~~PiIfaLsNP~pEi~p~~a~~~--~g~aivatG 324 (779)
+|- | +++++.+ +++.|+.-.|||..-+++-..+++ ....+|++|
T Consensus 79 rk~g~-tR~dll~~Na~I~~~i~~~i~~~~p~~ivivvsNPvDv~t~~~~k~sg~p~~rViG~g 141 (308)
T cd05292 79 QKPGE-TRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNPVDVLTYVAYKLSGLPPNRVIGSG 141 (308)
T ss_pred CCCCC-CHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHCCCCCHHEEECC
T ss_conf 99899-8789998889999999999984199808997279547899999997299802266024
No 77
>pfam02056 Glyco_hydro_4 Family 4 glycosyl hydrolase.
Probab=96.13 E-value=0.025 Score=35.09 Aligned_cols=114 Identities=18% Similarity=0.257 Sum_probs=66.5
Q ss_pred EEEEECCCHHHHH---HHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCCC-------CCCHHHHCCCCCE
Q ss_conf 1787425425678---99999981988575899955960307873326678897745088-------9888886058837
Q gi|254780137|r 204 KIVTLGAGAAALA---CLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKSG-------PKPLSETMNNADV 273 (779)
Q Consensus 204 ~iv~~GaGaAg~~---~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~~-------~~~l~ea~~~adv 273 (779)
||++.||||.... ..+++..-...-..++++|-+ +.|-+.+...-+.+.++.+ ..++.||++|||.
T Consensus 1 KI~iIGaGS~~~~~~~~~d~~~~~~l~~~ei~L~DId----~~rL~~~~~l~~~~~~~~~~~~~v~~ttd~~eAl~gADf 76 (183)
T pfam02056 1 KIVIIGGGSTITPKNLLGDLDHTEELPGRELALYDID----EERLDAIQTACKKLVDEAGPDIKFEKTTDRKEALTDADF 76 (183)
T ss_pred CEEEECCCHHHHHHHHHHHHHCCCCCCCCEEEEECCC----HHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCCE
T ss_conf 9899998544439999999960856898999997799----999999999999999961998399997899999668999
Q ss_pred EEEC-CC----------------------------CCCCC--------HHHHHHC---CCCCEEEEECCCCCCCCHHHHH
Q ss_conf 8625-78----------------------------87789--------8899721---8997799917872009988998
Q gi|254780137|r 274 FLGL-SV----------------------------AGALD--------PAILKFM---AEKPLIMVLANPNPEAMPDEIK 313 (779)
Q Consensus 274 ~iG~-S~----------------------------~g~~t--------~e~v~~M---~~~PiIfaLsNP~pEi~p~~a~ 313 (779)
.+-. .. +|.|. -|+.+.| |++..++--+||...++....+
T Consensus 77 Vi~~irvG~~~~r~~De~Iplk~Gv~~~~~eT~G~GG~~~alRtip~~l~ia~~i~e~~P~AwliNytNP~~~vt~al~r 156 (183)
T pfam02056 77 VINAIRVGLLPARELDEKIPLRHGVVGTIQETVGPGGIFRGLRTIPVFFDIAKDIEELCPDAWVLNYTNPAAMVTEAVYR 156 (183)
T ss_pred EEEEEEECCCHHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHH
T ss_conf 99986407714888777679983965323324572288877601899999999999979983899827888999999998
Q ss_pred HHCCCEEE
Q ss_conf 51898798
Q gi|254780137|r 314 KVRPDAMI 321 (779)
Q Consensus 314 ~~~g~aiv 321 (779)
...+..++
T Consensus 157 ~~~~~k~v 164 (183)
T pfam02056 157 RYPNIKAV 164 (183)
T ss_pred HCCCCCEE
T ss_conf 58999889
No 78
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit; InterPro: IPR014215 This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by IPR014214 from INTERPRO. This protein is also known as SpoVFA..
Probab=96.10 E-value=0.12 Score=30.32 Aligned_cols=175 Identities=14% Similarity=0.167 Sum_probs=115.2
Q ss_pred HHHHHHHHHHCCCCCEEEHHHCCCCHHHHHHHHHHHHHCCC---CCC-CCCCCH--HH-HHHHHHHHHHHHHCCCHHHCE
Q ss_conf 99999998708884606222064801579999999871894---216-877218--99-999999999997098822411
Q gi|254780137|r 132 DTMVSTIVALEPTFGGINLEDIKAPECFEVERILSQKLKIP---FLH-DDQHGT--AV-TVTAATLNGMKLVGKKFSDIK 204 (779)
Q Consensus 132 ~e~i~~v~~~~p~fg~i~lEDi~~p~~f~i~~~l~~~~~ip---vf~-DD~qGT--a~-v~lA~llnAl~~~gk~l~~~~ 204 (779)
.|..+-++.-.+-|- =|++|+ +++|-+..+.+ .|- ||. -+ .| -+=+++.=|+.-|.-.+--.|
T Consensus 85 ~~~~~~~~~~~~~~~-----Gisn~y----L~~l~~~a~~~Li~l~erDdv-AIYNSIPtaEGAimMA~e~td~TIHgS~ 154 (288)
T TIGR02853 85 PELLEETKKHCTIYV-----GISNDY----LEELAAEAGVKLIELFERDDV-AIYNSIPTAEGAIMMAIEHTDFTIHGSN 154 (288)
T ss_pred HHHHHHCCCCEEEEE-----CCCCHH----HHHHHHHCCCCEEEECCCCCE-EEECCCCCHHHHHHHHHHCCCCCEECCE
T ss_conf 689952079438997-----377658----999998719602410035753-3445875567899999724896250134
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCCCCCCHHHHCCCCCEEEECCCCCCCC
Q ss_conf 78742542567899999981988575899955960307873326678897745088988888605883786257887789
Q gi|254780137|r 205 IVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKSGPKPLSETMNNADVFLGLSVAGALD 284 (779)
Q Consensus 205 iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~~~~~l~ea~~~adv~iG~S~~g~~t 284 (779)
+.+.|-|=-|..+|++|..+|. ++.++=| +...+-..-..--+.-+...|.|.++.+|++|-+==.=++|
T Consensus 155 v~VlGfGRtG~tiAr~f~aLGA---~V~V~AR-------~~~dlARI~E~g~~P~~~~~L~~~v~e~DIviNTiPaLvlt 224 (288)
T TIGR02853 155 VMVLGFGRTGMTIARTFSALGA---RVSVGAR-------SSADLARITEMGLEPVPLNKLEEKVAEIDIVINTIPALVLT 224 (288)
T ss_pred EEEECCCCHHHHHHHHHHHCCC---EEEEECC-------CHHHHHHHHHHCCCCCCHHHHHHHHCCCCEEEECCCCCCCC
T ss_conf 5788447056899999972698---0575317-------83678999996068827167887650002477067630036
Q ss_pred HHHHHHCCCCCEEEEECCCCCCCCHHHHHHHCCCEEECCCCC
Q ss_conf 889972189977999178720099889985189879805887
Q gi|254780137|r 285 PAILKFMAEKPLIMVLANPNPEAMPDEIKKVRPDAMICTGRS 326 (779)
Q Consensus 285 ~e~v~~M~~~PiIfaLsNP~pEi~p~~a~~~~g~aivatGrs 326 (779)
.+++..|-+|.+|.=||--===.+.+-|++-.=.|+.|-|-|
T Consensus 225 ~~~l~~lp~~AviiDLAS~PGGtDF~yAk~~Gi~A~LAPGLP 266 (288)
T TIGR02853 225 KDVLSKLPKHAVIIDLASKPGGTDFEYAKKRGIKALLAPGLP 266 (288)
T ss_pred HHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCEEEECCCCC
T ss_conf 589952685848997327848737698986298289718787
No 79
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=96.09 E-value=0.011 Score=37.48 Aligned_cols=203 Identities=17% Similarity=0.294 Sum_probs=110.7
Q ss_pred HHHHHHHHHCCCCEEEEECCCCEECCCCCCCCCC-C-CCHHHHHHHHHHHHCCCCEE-----EEECC-------------
Q ss_conf 8998887513584799981785002542205105-8-30010089999862698526-----54238-------------
Q gi|254780137|r 68 DPSKAAMYTNRSNLVAVVSNGSAVLGLGDIGPLA-S-KPVMEGKAVLFKKFAGINVF-----DIEIN------------- 127 (779)
Q Consensus 68 ~~~~~~~~t~~~n~vaVvtdGt~vLGLGdiG~~a-~-~pvmeGK~~L~k~~agid~~-----~i~~~------------- 127 (779)
-|..+.+|+.+|..|.|=+.--.=.|.-|--=.. | .=|-.-+ ..|+.-|.+ |+..+
T Consensus 19 tP~~V~~l~~~GheVlVe~gAG~gsg~~D~~Y~~aGA~Iv~ta~----~vw~~~dmvvKvKEP~~~EY~ylregqiLfty 94 (371)
T COG0686 19 TPASVRELVNHGHEVLVETGAGAGSGFDDDDYEAAGAKIVATAA----EVWAEADMVVKVKEPLPSEYPYLREGQILFTY 94 (371)
T ss_pred CHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHCCCEEECCHH----HHHCCCCEEEEECCCCHHHHHHHCCCCEEEEE
T ss_conf 75769999737958999658767789882788972887745888----86110245899557880255552378589998
Q ss_pred ---CCCH---HHHHHHHHHHCCCCCEEEHHHCCCCH-HHHHHHHHH---HHHCCCC---CCCCCCCHHHHHHHHHHHHHH
Q ss_conf ---8988---99999998708884606222064801-579999999---8718942---168772189999999999999
Q gi|254780137|r 128 ---AKDV---DTMVSTIVALEPTFGGINLEDIKAPE-CFEVERILS---QKLKIPF---LHDDQHGTAVTVTAATLNGMK 194 (779)
Q Consensus 128 ---~~d~---~e~i~~v~~~~p~fg~i~lEDi~~p~-~f~i~~~l~---~~~~ipv---f~DD~qGTa~v~lA~llnAl~ 194 (779)
..++ +.|++. ..-.|-+|-+.-|. ..+++.-.. .||.++. |-.-+||--.|.++|+-
T Consensus 95 LHLA~~~~lt~~l~~~------gvtaIayETV~~~~g~lPlLaPMSeVAGrla~q~Ga~~lek~~GG~GvllgGvp---- 164 (371)
T COG0686 95 LHLAASPELTEALLKS------GVTAIAYETVQLPDGNLPLLAPMSEVAGRLAAQAGAYYLEKTNGGKGVLLGGVP---- 164 (371)
T ss_pred EEECCCHHHHHHHHHC------CCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCC----
T ss_conf 4005886899999865------861478999973899875233178886667778889998750488436743778----
Q ss_pred HHCCCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHC-----CCCCCHHHHCC
Q ss_conf 7098822411787425425678999999819885758999559603078733266788977450-----88988888605
Q gi|254780137|r 195 LVGKKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQK-----SGPKPLSETMN 269 (779)
Q Consensus 195 ~~gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~-----~~~~~l~ea~~ 269 (779)
....-|+++.|.|-+|+--+++..-+|. ++..+|.. .+.++.....|... .+...++++++
T Consensus 165 ----GV~~~kv~iiGGGvvgtnaAkiA~glgA---~Vtild~n-------~~rl~~ldd~f~~rv~~~~st~~~iee~v~ 230 (371)
T COG0686 165 ----GVLPAKVVVLGGGVVGTNAAKIAIGLGA---DVTILDLN-------IDRLRQLDDLFGGRVHTLYSTPSNIEEAVK 230 (371)
T ss_pred ----CCCCCCEEEECCCCCCCHHHHHHHCCCC---EEEEEECC-------HHHHHHHHHHHCCEEEEEECCHHHHHHHHH
T ss_conf ----9877608998776124069999723687---06999527-------788764067657666999758999998743
Q ss_pred CCCEEEECC------CCCCCCHHHHHHCCCCCEEE
Q ss_conf 883786257------88778988997218997799
Q gi|254780137|r 270 NADVFLGLS------VAGALDPAILKFMAEKPLIM 298 (779)
Q Consensus 270 ~adv~iG~S------~~g~~t~e~v~~M~~~PiIf 298 (779)
++|++||.- .|.++|+||++.|-+..+|.
T Consensus 231 ~aDlvIgaVLIpgakaPkLvt~e~vk~MkpGsViv 265 (371)
T COG0686 231 KADLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIV 265 (371)
T ss_pred HCCEEEEEEEECCCCCCEEHHHHHHHHCCCCCEEE
T ss_conf 12679888884588786010699997447985899
No 80
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=96.09 E-value=0.031 Score=34.48 Aligned_cols=157 Identities=20% Similarity=0.338 Sum_probs=88.0
Q ss_pred HHHHHCCCCE----EEEE---CCCCCHHHHHHHHHHHCCCCCEEEHHHCCCCH---HHHHHHHHHHH------HCCCCCC
Q ss_conf 9986269852----6542---38898899999998708884606222064801---57999999987------1894216
Q gi|254780137|r 112 LFKKFAGINV----FDIE---INAKDVDTMVSTIVALEPTFGGINLEDIKAPE---CFEVERILSQK------LKIPFLH 175 (779)
Q Consensus 112 L~k~~agid~----~~i~---~~~~d~~e~i~~v~~~~p~fg~i~lEDi~~p~---~f~i~~~l~~~------~~ipvf~ 175 (779)
.|+. -|+|. |++. +...+-++|++..+.. .|.|+|. .-|+ ++...+++.+. .|--++.
T Consensus 27 ~~~~-lgl~~~Y~~~d~~~~~~~~~~l~~~~~~~~~~--~~~G~nV---TiP~K~~~~~~~d~l~~~A~~igAvNTi~~~ 100 (284)
T PRK12549 27 EGDA-QGLRYVYRLIDLDALGLSADALPELLDAAERM--GFNGLNI---THPCKQAVIPLLDELSDDARALGAVNTVVFR 100 (284)
T ss_pred HHHH-CCCCCEEEEEECCCCCCCHHHHHHHHHHHHHC--CCCEEEE---CCCCHHHHHHHHHHHHHHHHHHCCEEEEEEE
T ss_conf 9998-79980999753212139978999999998768--9988998---1174999999970523789985652148975
Q ss_pred CC-CCCHHHHHHHHHHHHHHHHCCCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCC-CHHHH
Q ss_conf 87-72189999999999999709882241178742542567899999981988575899955960307873326-67889
Q gi|254780137|r 176 DD-QHGTAVTVTAATLNGMKLVGKKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKF-DKWKS 253 (779)
Q Consensus 176 DD-~qGTa~v~lA~llnAl~~~gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~-~~~~~ 253 (779)
|+ ..|+- .=..|++.+++-....+...++++.|||.|+-+++--+...|++ ++++++| +..|...+ +....
T Consensus 101 ~g~l~G~N-TD~~G~~~~l~~~~~~~~~~~vlilGaGGaa~ai~~al~~~g~~--~i~I~nR----~~~r~~~l~~~l~~ 173 (284)
T PRK12549 101 DGRRIGHN-TDWSGFAEGFRRGLPDASLERVVQLGAGGAGAAVAHALLTLGVE--RLTLFDV----DPARAQALADELNA 173 (284)
T ss_pred CCEEEEEE-CCHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHCCCC--EEEEEEC----CHHHHHHHHHHHHH
T ss_conf 99899980-66688999999746453557189965661689999999976999--8999979----88999999999986
Q ss_pred HHH--HCCCCCCHHHHCCCCCEEEECCCCC
Q ss_conf 774--5088988888605883786257887
Q gi|254780137|r 254 VYA--QKSGPKPLSETMNNADVFLGLSVAG 281 (779)
Q Consensus 254 ~~a--~~~~~~~l~ea~~~adv~iG~S~~g 281 (779)
.+. .......+.+.+..+|++|.++-.|
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~d~iINaTp~G 203 (284)
T PRK12549 174 RFPAARVTAGSDLAAALAAADGLVHATPTG 203 (284)
T ss_pred HCCCCEEEECHHHHHHHHHCCEEEECCCCC
T ss_conf 579863764167676542138266578988
No 81
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=95.97 E-value=0.017 Score=36.23 Aligned_cols=184 Identities=21% Similarity=0.319 Sum_probs=95.1
Q ss_pred ECCCCEECCC-CCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHH-CCCCCEEEHHHCCCCHH---H
Q ss_conf 8178500254-22051058300100899998626985265423889889999999870-88846062220648015---7
Q gi|254780137|r 85 VSNGSAVLGL-GDIGPLASKPVMEGKAVLFKKFAGINVFDIEINAKDVDTMVSTIVAL-EPTFGGINLEDIKAPEC---F 159 (779)
Q Consensus 85 vtdGt~vLGL-GdiG~~a~~pvmeGK~~L~k~~agid~~~i~~~~~d~~e~i~~v~~~-~p~fg~i~lEDi~~p~~---f 159 (779)
||--|+++|| |+==.+---|+|- -..|++ .|+|..-..++. ++++|-++++.+ ...|.|.|. .-|+= +
T Consensus 5 i~~~T~~~gviG~PI~hSlSP~ih--n~~~~~-~gi~~~Y~~~~v-~~~~l~~~~~~~~~~~~~G~nV---TiP~K~~v~ 77 (289)
T PRK12548 5 ISGTTGLLGLIGTPVGHSKSPAMY--NYSFQK-AGLDYAYLAFDV-PKEKVADAITAIRTFNMRGANV---TMPCKSEVA 77 (289)
T ss_pred CCCCCEEEEEECCCCCCCCCHHHH--HHHHHH-CCCCCEEEEEEC-CHHHHHHHHHHHHHCCCCEEEE---CHHHHHHHH
T ss_conf 288614999978880102249999--999998-699929997877-8889999999887479988997---261399999
Q ss_pred HHHHHHHH------HHCCCCCCCC-CCC--HHHHHHHHHHHHHHHHCCCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCC
Q ss_conf 99999998------7189421687-721--89999999999999709882241178742542567899999981988575
Q gi|254780137|r 160 EVERILSQ------KLKIPFLHDD-QHG--TAVTVTAATLNGMKLVGKKFSDIKIVTLGAGAAALACLNLLVTMGVRREN 230 (779)
Q Consensus 160 ~i~~~l~~------~~~ipvf~DD-~qG--Ta~v~lA~llnAl~~~gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~ 230 (779)
...+++.+ ..|--++.|+ ..| |= ..|++++|+-.+.++...++++.|+|.|+-+++-.+...|.+ +
T Consensus 78 ~~~d~l~~~A~~iGAvNTi~~~~g~l~G~NTD---~~Gf~~~L~~~~~~~~~k~vlIlGaGGaa~ai~~~l~~~g~~--~ 152 (289)
T PRK12548 78 KLMDELSPAARIIGAVNTIVNDDGKLTGHITD---GLGFVRNLREHGVDVKGKKLTIIGAGGAATAIQVQCALDGAK--E 152 (289)
T ss_pred HHHCCCCHHHHHHCCEEEEECCCCEEEEECCC---HHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHCCCC--E
T ss_conf 97564998899840524777339989987587---799999999809996777479995216799999999976998--8
Q ss_pred EEEEECCCEEECCCCC-CCCHHHHHHHH-------CCCCCCHHHHCCCCCEEEECCCCC
Q ss_conf 8999559603078733-26678897745-------088988888605883786257887
Q gi|254780137|r 231 IWVYDLEGLVYEGREK-KFDKWKSVYAQ-------KSGPKPLSETMNNADVFLGLSVAG 281 (779)
Q Consensus 231 i~~~D~~Gli~~~r~~-~~~~~~~~~a~-------~~~~~~l~ea~~~adv~iG~S~~g 281 (779)
++++++....++ |.. .....+..+.. ..+...+.+.+..+|++|-++.-|
T Consensus 153 i~i~nr~~~~~~-ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dliINaT~~G 210 (289)
T PRK12548 153 ITIFNIKDDFYE-RAEQTVAKIKEEVPACIVHVYDLNDTEKLNAEIATSDILVNATLVG 210 (289)
T ss_pred EEEEECCCHHHH-HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCEEEECCCCC
T ss_conf 999968814889-9999999998458776479851431666655432267445335656
No 82
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=95.90 E-value=0.15 Score=29.74 Aligned_cols=158 Identities=11% Similarity=0.078 Sum_probs=87.0
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHCCCCCEEEHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCHH---HHHHHHHHHHH
Q ss_conf 698526542388988999999987088846062220648015799999998718942168772189---99999999999
Q gi|254780137|r 117 AGINVFDIEINAKDVDTMVSTIVALEPTFGGINLEDIKAPECFEVERILSQKLKIPFLHDDQHGTA---VTVTAATLNGM 193 (779)
Q Consensus 117 agid~~~i~~~~~d~~e~i~~v~~~~p~fg~i~lEDi~~p~~f~i~~~l~~~~~ipvf~DD~qGTa---~v~lA~llnAl 193 (779)
.+.|++=+---|+=.+++++.-+..+-.-.++-+..|- .+.+++ .+|+|+|=-=--+- =-+++.++.-.
T Consensus 36 ~daD~LiVRS~T~V~~~LL~~s~lKfIgtat~G~DhID-------~~~l~~-~gI~v~naPG~Na~sVaEyvl~~ll~la 107 (379)
T PRK00257 36 RDADALLVRSVTRVDRALLEGSKVRFVGTCTIGTDHLD-------LDYFAE-AGITWSNAPGCNARGVVDYVLGSLLTLA 107 (379)
T ss_pred CCCCEEEEECCCCCCHHHHCCCCCEEEEECCCCCCCCC-------HHHHHH-CCCEEEECCCCCHHHHHHHHHHHHHHHH
T ss_conf 77889999568744899975699269997456353146-------999986-9978996998777999999999999999
Q ss_pred HHHCCCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCCCCCCHHHHCCCCCE
Q ss_conf 97098822411787425425678999999819885758999559603078733266788977450889888886058837
Q gi|254780137|r 194 KLVGKKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKSGPKPLSETMNNADV 273 (779)
Q Consensus 194 ~~~gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~~~~~l~ea~~~adv 273 (779)
+..|..+.+.++-+.|.|.-|-.+++.+..+|+ ++..+|...- .+ + ......+|.+.++.+|+
T Consensus 108 ~~~g~~l~gktvGIIG~G~IG~~va~~l~afG~---~vl~~DP~~~---~~-~----------~~~~~~sleell~~sDi 170 (379)
T PRK00257 108 EREGVDLAERTYGIVGVGHVGGRLVRVLRGLGW---KVLVCDPPRQ---EA-E----------GDGDFVSLERILEECDI 170 (379)
T ss_pred HHHCHHHCCCEEEEECCCHHHHHHHHHHHHCCC---EEEEECCHHH---HH-H----------CCCCEECHHHHHHHCCE
T ss_conf 850866519879997716799999999997799---8999784576---64-3----------38603349999874999
Q ss_pred EE-ECC--------CCCCCCHHHHHHCCCCCEEEE
Q ss_conf 86-257--------887789889972189977999
Q gi|254780137|r 274 FL-GLS--------VAGALDPAILKFMAEKPLIMV 299 (779)
Q Consensus 274 ~i-G~S--------~~g~~t~e~v~~M~~~PiIfa 299 (779)
+. -+. ..+.+.++.+..|.+..|+.=
T Consensus 171 IslHvPLt~~g~~~T~~Li~~~~L~~mk~~aiLIN 205 (379)
T PRK00257 171 ISLHTPLTKEGEHPTWHLLDEAFLASLRPGAWLIN 205 (379)
T ss_pred EEEECCCCCCCCCCCCCCCCHHHHHHCCCCCEEEE
T ss_conf 99925777788753204719999960799809998
No 83
>pfam02826 2-Hacid_dh_C D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain. This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389.
Probab=95.82 E-value=0.07 Score=31.99 Aligned_cols=95 Identities=18% Similarity=0.245 Sum_probs=70.9
Q ss_pred HHCCCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCCCCCCHHHHCCCCCEE
Q ss_conf 70988224117874254256789999998198857589995596030787332667889774508898888860588378
Q gi|254780137|r 195 LVGKKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKSGPKPLSETMNNADVF 274 (779)
Q Consensus 195 ~~gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~~~~~l~ea~~~adv~ 274 (779)
..|..|...++.+.|.|.-|-.+++++..+|+ +++.+|+..- .. .... .....+|.+.++.+|++
T Consensus 29 ~~g~~L~gk~vgIiG~G~IG~~va~~l~~fg~---~V~~~d~~~~-----~~----~~~~---~~~~~~l~~ll~~sDii 93 (176)
T pfam02826 29 LLGRELSGKTVGIIGLGRIGRAVARRLKAFGM---KVIAYDRYPK-----AE----AEAL---GARYVSLDELLAESDVV 93 (176)
T ss_pred CCCCCCCCCEEEEECCCHHHHHHHHHHHHHCC---CEEEECCCCC-----CH----HHHC---CEEECCHHHHHHHCCEE
T ss_conf 88555799999998969999999999998398---1254379876-----10----2315---71666899998629988
Q ss_pred EEC-C----CCCCCCHHHHHHCCCCCEEEEECCCC
Q ss_conf 625-7----88778988997218997799917872
Q gi|254780137|r 275 LGL-S----VAGALDPAILKFMAEKPLIMVLANPN 304 (779)
Q Consensus 275 iG~-S----~~g~~t~e~v~~M~~~PiIfaLsNP~ 304 (779)
+-. . ..+.|+++.+..|.++.++-=.|--.
T Consensus 94 ~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ 128 (176)
T pfam02826 94 SLHLPLTPETRHLINAERLALMKPGAILINTARGG 128 (176)
T ss_pred EECCCCCCCCCCCCCHHHHHHHCCCCEEEEECCCC
T ss_conf 75476742024634699998518998899806755
No 84
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=95.78 E-value=0.17 Score=29.40 Aligned_cols=125 Identities=18% Similarity=0.250 Sum_probs=85.6
Q ss_pred HHHHHHHHHHCCCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHC-----CCC
Q ss_conf 999999997098822411787425425678999999819885758999559603078733266788977450-----889
Q gi|254780137|r 187 AATLNGMKLVGKKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQK-----SGP 261 (779)
Q Consensus 187 A~llnAl~~~gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~-----~~~ 261 (779)
-+.-.+++..|.+|+..||.+.|-|..|...++.+..+|.+ =+.+-|++|.||+. +.++..+....++ .+.
T Consensus 192 ~~~~~a~~~~g~~l~G~rVaVQG~GNVg~~aa~~l~~~GAk--vv~~sds~g~i~~~--~Gld~~~l~~~~~~~~~v~~~ 267 (411)
T COG0334 192 YAIREALKALGDDLEGARVAVQGFGNVGQYAAEKLHELGAK--VVAVSDSKGGIYDE--DGLDVEALLELKERRGSVAEY 267 (411)
T ss_pred HHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCE--EEEEECCCCCEECC--CCCCHHHHHHHHHHHHHHHHH
T ss_conf 99999999817776887899977628999999999974997--99997678844167--777889998776644458763
Q ss_pred ---C--CHHHHC-CCCCEEEECCCCCCCCHHHHHHCCCCCEEEEECC-CCCCCCHHHHHHHCC
Q ss_conf ---8--888860-5883786257887789889972189977999178-720099889985189
Q gi|254780137|r 262 ---K--PLSETM-NNADVFLGLSVAGALDPAILKFMAEKPLIMVLAN-PNPEAMPDEIKKVRP 317 (779)
Q Consensus 262 ---~--~l~ea~-~~adv~iG~S~~g~~t~e~v~~M~~~PiIfaLsN-P~pEi~p~~a~~~~g 317 (779)
. +-.+.+ ..+|||+=+-..+.+|++-......+ +|.--|| |+ +...++....+|
T Consensus 268 ~ga~~i~~~e~~~~~cDIl~PcA~~n~I~~~na~~l~ak-~V~EgAN~P~-t~eA~~i~~erG 328 (411)
T COG0334 268 AGAEYITNEELLEVDCDILIPCALENVITEDNADQLKAK-IVVEGANGPT-TPEADEILLERG 328 (411)
T ss_pred CCCEECCCCCCCCCCCCEECCCCCCCCCCHHHHHHHHCC-EEEECCCCCC-CHHHHHHHHHCC
T ss_conf 486672651300457757710444362563218875002-7985267999-877899999789
No 85
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=95.75 E-value=0.11 Score=30.57 Aligned_cols=121 Identities=19% Similarity=0.244 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHCEEEEECC-CHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCC-CCCHHHHHHHHC
Q ss_conf 899999999999997098822411787425-425678999999819885758999559603078733-266788977450
Q gi|254780137|r 181 TAVTVTAATLNGMKLVGKKFSDIKIVTLGA-GAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREK-KFDKWKSVYAQK 258 (779)
Q Consensus 181 Ta~v~lA~llnAl~~~gk~l~~~~iv~~Ga-GaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~-~~~~~~~~~a~~ 258 (779)
||+...+++--+++..|.+|+..+++++|+ |.=|..++.++-..|. ++.++.|+. .|-+ .-.+.+.+|-..
T Consensus 7 TAAA~Va~vekal~~~g~dl~g~~~~V~G~tG~vG~~~A~~lA~~Ga---~v~lv~R~~----ek~~~~a~~i~~r~g~~ 79 (194)
T cd01078 7 TAAAAVAAAGKALELMGKDLKGKTAVVLGGTGPVGQRAAVLLAREGA---RVVLVGRDL----ERAQKAADSLRARFGEG 79 (194)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEECCH----HHHHHHHHHHHHHCCCC
T ss_conf 99999999999999829986798899985885789999999998399---799995878----88999999999970987
Q ss_pred C------CCCCHHHHCCCCCEEEECCCCCCCC-HHHHHHCCCCCEEEEECCCCCCCCH
Q ss_conf 8------8988888605883786257887789-8899721899779991787200998
Q gi|254780137|r 259 S------GPKPLSETMNNADVFLGLSVAGALD-PAILKFMAEKPLIMVLANPNPEAMP 309 (779)
Q Consensus 259 ~------~~~~l~ea~~~adv~iG~S~~g~~t-~e~v~~M~~~PiIfaLsNP~pEi~p 309 (779)
. ......+++.++||.+.++..|+-. .+-. .-++.--|.+=-|-.|-.-.
T Consensus 80 ~~~~~~~~~~~~~~~l~~adiV~~a~aAGv~~~~~~~-~~~k~l~Vv~DVNAvPP~Gi 136 (194)
T cd01078 80 VGAVETSDDAARAAAIKGADVVFAAGAAGVELLEKLA-WAPKPLAVAADVNAVPPVGI 136 (194)
T ss_pred CCCCCCCCHHHHHHHHCCCCEEEECCHHHHHHHHHHH-HCCCCCEEEEECCCCCCCCC
T ss_conf 3113578877899774669899964277788878888-50888659986589998550
No 86
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.75 E-value=0.065 Score=32.20 Aligned_cols=119 Identities=22% Similarity=0.314 Sum_probs=72.1
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCCC---CCCHHHHCCCCCEEEECCC-
Q ss_conf 178742542567899999981988575899955960307873326678897745088---9888886058837862578-
Q gi|254780137|r 204 KIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKSG---PKPLSETMNNADVFLGLSV- 279 (779)
Q Consensus 204 ~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~~---~~~l~ea~~~adv~iG~S~- 279 (779)
||.+.|||.-|..+|-.+...+.. ..+.++|.+--..++...++++.. .+...++ .....+.++++|+.+=+.+
T Consensus 1 KI~IIGaG~VG~~~A~~l~~~~~~-~elvL~Di~~~~a~g~a~Dl~h~~-~~~~~~~~~~~~~~y~~~~~aDiVVitaG~ 78 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLF-SEIVLIDVNEGVAEGEALDFHHAT-ALTYSTNTKIRAGDYDDCADADIIVITAGP 78 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCC-CEEEEEECCCCCCHHHHHHHHHHC-CCCCCCCEEECCCCHHHHCCCCEEEECCCC
T ss_conf 989999698999999999856998-879999288982379999876120-358998658667998994699999986777
Q ss_pred ---CCCC---------C----HHHHHHC---CCCCEEEEECCCCCCCCHHHHHHH--CCCEEECCC
Q ss_conf ---8778---------9----8899721---899779991787200998899851--898798058
Q gi|254780137|r 280 ---AGAL---------D----PAILKFM---AEKPLIMVLANPNPEAMPDEIKKV--RPDAMICTG 324 (779)
Q Consensus 280 ---~g~~---------t----~e~v~~M---~~~PiIfaLsNP~pEi~p~~a~~~--~g~aivatG 324 (779)
||-- . +++++.+ +++.|+.-.|||.--+++-..+.+ ....+++||
T Consensus 79 ~~kpg~t~~R~dL~~~N~~I~~~i~~~i~~~~p~~i~ivvsNPvDvmt~~~~k~sg~p~~rViG~G 144 (307)
T cd05290 79 SIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPLDIAVYIAATEFDYPANKVIGTG 144 (307)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEECC
T ss_conf 658999835888888578999999999861399749998479388999999998489935787202
No 87
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=95.74 E-value=0.043 Score=33.48 Aligned_cols=113 Identities=15% Similarity=0.249 Sum_probs=63.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHCC-----CCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCCC-------CCCHHHHCCC
Q ss_conf 11787425425678999999819-----88575899955960307873326678897745088-------9888886058
Q gi|254780137|r 203 IKIVTLGAGAAALACLNLLVTMG-----VRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKSG-------PKPLSETMNN 270 (779)
Q Consensus 203 ~~iv~~GaGaAg~~~a~ll~~~g-----~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~~-------~~~l~ea~~~ 270 (779)
.||+|.||||+ -..+++.... ..-..|+++|.+ +.|-+.+...-+.+++..+ ..++.+|++|
T Consensus 1 mKI~iIGaGS~--~t~~li~~l~~~~~~l~~~ei~L~DId----~~rL~~~~~la~~~~~~~g~~~~i~~ttdr~eAL~g 74 (437)
T cd05298 1 FKIVIAGGGST--YTPGIVKSLLDRKEDFPLRELVLYDID----AERQEKVAEAVKILFKENYPEIKFVYTTDPEEAFTD 74 (437)
T ss_pred CEEEEECCCHH--HHHHHHHHHHHCCCCCCCCEEEEECCC----HHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHCC
T ss_conf 96999898468--779999999828200698889997799----999999999999999852998179996799998579
Q ss_pred CCEEE---------------------EC----C-C-CCCCC--------HHHHHHC---CCCCEEEEECCCCCCCCHHHH
Q ss_conf 83786---------------------25----7-8-87789--------8899721---899779991787200998899
Q gi|254780137|r 271 ADVFL---------------------GL----S-V-AGALD--------PAILKFM---AEKPLIMVLANPNPEAMPDEI 312 (779)
Q Consensus 271 adv~i---------------------G~----S-~-~g~~t--------~e~v~~M---~~~PiIfaLsNP~pEi~p~~a 312 (779)
||..+ |+ + + +|.|. -|+.+.| |++..+|=-+||...++-...
T Consensus 75 ADfVi~~irvGg~~~r~~De~Ip~kyGivgqeT~G~GGi~~alRtiPv~ldia~di~e~cP~AwliNytNP~~~vt~al~ 154 (437)
T cd05298 75 ADFVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSPDAWILNYSNPAAIVAEALR 154 (437)
T ss_pred CCEEEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCHHHEEEEEHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHH
T ss_conf 99999966526832678887679875977601566462240114499999999999987999289975787899999999
Q ss_pred HHHCCCEEE
Q ss_conf 851898798
Q gi|254780137|r 313 KKVRPDAMI 321 (779)
Q Consensus 313 ~~~~g~aiv 321 (779)
....+..+|
T Consensus 155 ~~~~~~k~v 163 (437)
T cd05298 155 RLFPNARIL 163 (437)
T ss_pred HHCCCCCEE
T ss_conf 748999889
No 88
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=95.66 E-value=0.18 Score=29.10 Aligned_cols=165 Identities=12% Similarity=0.131 Sum_probs=92.3
Q ss_pred HHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHC---CCCC--EEEHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf 999986269852654238898899999998708---8846--06222064801579999999871894216877218999
Q gi|254780137|r 110 AVLFKKFAGINVFDIEINAKDVDTMVSTIVALE---PTFG--GINLEDIKAPECFEVERILSQKLKIPFLHDDQHGTAVT 184 (779)
Q Consensus 110 ~~L~k~~agid~~~i~~~~~d~~e~i~~v~~~~---p~fg--~i~lEDi~~p~~f~i~~~l~~~~~ipvf~DD~qGTa~v 184 (779)
-.||+-.+|+|.+=++- ++|.--||.-+ -..| |-.|+ .--..+|..-+|-|.+.+|- +|.-.|
T Consensus 91 ~HLfrVasGLDSmVlGE-----~QIlGQVK~Ay~~A~~~~~~g~~L~-~lfq~A~~~aKrVRteT~I~------~~~vSi 158 (338)
T PRK00676 91 THLFCVTSGMDSLILGE-----TEIQGQVKRAYLKAARERELPFALH-FLFQKALKEGKVFRSKGGAP------YAEVTI 158 (338)
T ss_pred HHHHHHHHCCHHHHCCC-----HHHHHHHHHHHHHHHHCCCCHHHHH-HHHHHHHHHHHHHHCCCCCC------CCCEEH
T ss_conf 99999872340353286-----8999999999999998098058999-99999999875521035779------887519
Q ss_pred HHHHHHHHHHHHCCCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCCCCCCH
Q ss_conf 99999999997098822411787425425678999999819885758999559603078733266788977450889888
Q gi|254780137|r 185 VTAATLNGMKLVGKKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKSGPKPL 264 (779)
Q Consensus 185 ~lA~llnAl~~~gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~~~~~l 264 (779)
. ++...+++..+.. .+.++++.|||.-|--+++.|...|++ +|+++.|+-+ -..+ ..+... ...+
T Consensus 159 ~-~~~~~~~~~~~~~-~~~~vLvIGaGem~~l~~k~L~~~g~~--~i~v~NR~~~--------~~~~-~~~~~~--~~~~ 223 (338)
T PRK00676 159 E-SVVQEELRRRQKS-KKASLLFIGYSEINRKVAYYLQRQGYS--RITFCSRQQL--------PTPY-RTVVRE--ELSF 223 (338)
T ss_pred H-HHHHHHHHHHCCC-CCCEEEEECCCHHHHHHHHHHHHCCCC--EEEEECCHHH--------HHHH-HHHHHH--HHCC
T ss_conf 9-9999999863786-788699986629999999999876999--7999886566--------6654-788787--7502
Q ss_pred HHHCCCCCEEE-ECCCC-CCCCHHHHHHCCCCC--EEEEECCCC
Q ss_conf 88605883786-25788-778988997218997--799917872
Q gi|254780137|r 265 SETMNNADVFL-GLSVA-GALDPAILKFMAEKP--LIMVLANPN 304 (779)
Q Consensus 265 ~ea~~~adv~i-G~S~~-g~~t~e~v~~M~~~P--iIfaLsNP~ 304 (779)
....|+.+ ++|.+ -.++..+++.+...| ++|=||.|-
T Consensus 224 ---~~~~diii~~ts~~~~~~~~~~~e~~~~~~~rliiDLAVPR 264 (338)
T PRK00676 224 ---RDPYDVIFFGSSESAYAFPHLSWESLASIPDRIVFDFNVPR 264 (338)
T ss_pred ---CCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEECCCC
T ss_conf ---46578899967886545656789998715698799950799
No 89
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=95.61 E-value=0.062 Score=32.37 Aligned_cols=114 Identities=21% Similarity=0.268 Sum_probs=65.4
Q ss_pred CEEEEECCCHHH--HHHHHHHHH-CCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCCC-------CCCHHHHCCCCC
Q ss_conf 117874254256--789999998-1988575899955960307873326678897745088-------988888605883
Q gi|254780137|r 203 IKIVTLGAGAAA--LACLNLLVT-MGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKSG-------PKPLSETMNNAD 272 (779)
Q Consensus 203 ~~iv~~GaGaAg--~~~a~ll~~-~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~~-------~~~l~ea~~~ad 272 (779)
.||+|.||||.+ -++.+-+.. -......++++|.+ ..|-+.+...-+.+++..+ ..++.+|++|||
T Consensus 1 ~KI~iIGgGS~~ftp~li~~l~~~~~l~~~ei~L~Did----~erl~~v~~l~~~~~~~~~~~~~v~~Ttd~~eAl~gAD 76 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDID----EERLETVEILAKKIVEELGAPLKIEATTDRREALDGAD 76 (423)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCCCCCCEEEEECCC----HHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHCCCC
T ss_conf 97999998648759999999960845789989998899----99999999999999985199818999689999846899
Q ss_pred EE---------------------------EE-CCCC-CCCC--------HHHH---HHCCCCCEEEEECCCCCCCCHHHH
Q ss_conf 78---------------------------62-5788-7789--------8899---721899779991787200998899
Q gi|254780137|r 273 VF---------------------------LG-LSVA-GALD--------PAIL---KFMAEKPLIMVLANPNPEAMPDEI 312 (779)
Q Consensus 273 v~---------------------------iG-~S~~-g~~t--------~e~v---~~M~~~PiIfaLsNP~pEi~p~~a 312 (779)
.. +| +.++ |.|. -|++ +..|++..+|=-+||...++-...
T Consensus 77 fV~~~irvGg~~~r~~De~Iplk~Gv~~~vGET~G~GG~~~alRtIPv~leia~~i~e~~P~AwiiNytNP~~ivteal~ 156 (423)
T cd05297 77 FVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANPMAELTWALN 156 (423)
T ss_pred EEEEEEEECCCHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHH
T ss_conf 99998774682488988848988396604456547758999862289999999999987998389976788899999999
Q ss_pred HHHCCCEEE
Q ss_conf 851898798
Q gi|254780137|r 313 KKVRPDAMI 321 (779)
Q Consensus 313 ~~~~g~aiv 321 (779)
+.+ +..++
T Consensus 157 r~~-~~k~i 164 (423)
T cd05297 157 RYT-PIKTV 164 (423)
T ss_pred HHC-CCCEE
T ss_conf 738-99789
No 90
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=95.43 E-value=0.09 Score=31.24 Aligned_cols=113 Identities=19% Similarity=0.346 Sum_probs=64.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHC-----CCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCCC-------CCCHHHHCCC
Q ss_conf 1178742542567899999981-----988575899955960307873326678897745088-------9888886058
Q gi|254780137|r 203 IKIVTLGAGAAALACLNLLVTM-----GVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKSG-------PKPLSETMNN 270 (779)
Q Consensus 203 ~~iv~~GaGaAg~~~a~ll~~~-----g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~~-------~~~l~ea~~~ 270 (779)
.||+|.||||+ -...++..+ ...-..|+++|.+ +.|-+.+...-+.+.+..+ ..++.+|++|
T Consensus 1 mKI~iIGaGS~--~t~~lv~~l~~~~~~l~~~ei~L~DId----~erL~~~~~~a~~~~~~~~~~~~v~~ttd~~eAl~g 74 (425)
T cd05197 1 VKIAIIGGGSS--FTPELVSGLLKTPEELPISEVTLYDID----EERLDIILTIAKRYVEEVGADIKFEKTMDLEDAIID 74 (425)
T ss_pred CEEEEECCCHH--HHHHHHHHHHHCHHHCCCCEEEEECCC----HHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHCC
T ss_conf 97999898368--789999999838433788989998899----999999999999999961998389997899998568
Q ss_pred CCEEE------------------------EC--CC-CCCCC--------HHHH---HHCCCCCEEEEECCCCCCCCHHHH
Q ss_conf 83786------------------------25--78-87789--------8899---721899779991787200998899
Q gi|254780137|r 271 ADVFL------------------------GL--SV-AGALD--------PAIL---KFMAEKPLIMVLANPNPEAMPDEI 312 (779)
Q Consensus 271 adv~i------------------------G~--S~-~g~~t--------~e~v---~~M~~~PiIfaLsNP~pEi~p~~a 312 (779)
||..+ |- .+ +|.|. -++. +..|++..+|=-+||...++-...
T Consensus 75 ADfVi~~irvGg~~~r~~De~IplkyGv~gqeT~G~GG~~~alRtIPv~l~ia~~i~e~cP~AwliNytNP~~ivt~al~ 154 (425)
T cd05197 75 ADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLSPDAWYLNFTNPAGEVTEAVR 154 (425)
T ss_pred CCEEEEEEEECCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHH
T ss_conf 99999988756705789998689875914443777889999984299999999999986998089973787899999999
Q ss_pred HHHCCCEEE
Q ss_conf 851898798
Q gi|254780137|r 313 KKVRPDAMI 321 (779)
Q Consensus 313 ~~~~g~aiv 321 (779)
+.+.+..+|
T Consensus 155 ~~~~~~k~v 163 (425)
T cd05197 155 RYVPPEKAV 163 (425)
T ss_pred HHCCCCCEE
T ss_conf 748888489
No 91
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=95.18 E-value=0.26 Score=28.02 Aligned_cols=162 Identities=15% Similarity=0.177 Sum_probs=91.2
Q ss_pred HHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCEEEHHHCCCCHHHHHHHHHH---HH------HC--------CCC
Q ss_conf 99986269852654238898899999998708884606222064801579999999---87------18--------942
Q gi|254780137|r 111 VLFKKFAGINVFDIEINAKDVDTMVSTIVALEPTFGGINLEDIKAPECFEVERILS---QK------LK--------IPF 173 (779)
Q Consensus 111 ~L~k~~agid~~~i~~~~~d~~e~i~~v~~~~p~fg~i~lEDi~~p~~f~i~~~l~---~~------~~--------ipv 173 (779)
..|++ -|+|..-+.++.+|-+++++..+. +.|.|.|. .-|+=..+.+.+- ++ .| +-=
T Consensus 29 ~af~~-lgl~~~Y~~~~~~~l~~~i~~lr~--~~~~G~nV---TiP~K~~i~~~lD~ld~~A~~iGAVNTiv~~~g~l~G 102 (272)
T PRK12550 29 YLYEA-LGLNFLYKAFTTTDLTAAIGGVRA--LGIRGCAV---SMPFKEACIPLVDELDPSAKAIESVNTIVNTDGHLKA 102 (272)
T ss_pred HHHHH-CCCCEEEEEECHHHHHHHHHHHHH--CCCCEEEE---CCCCHHHHHHHHCCCCHHHHHHCCEEEEEEECCEEEE
T ss_conf 99998-799929986378779999998875--79988998---6436999999854368889972755479955998999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHH
Q ss_conf 16877218999999999999970988224117874254256789999998198857589995596030787332667889
Q gi|254780137|r 174 LHDDQHGTAVTVTAATLNGMKLVGKKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKS 253 (779)
Q Consensus 174 f~DD~qGTa~v~lA~llnAl~~~gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~ 253 (779)
+|-|- .|+..+++-.+.+ ...++++.|||.|+-+++--|..+|+. ++++++|. ..+..
T Consensus 103 ~NTD~--------~G~~~~l~~~~~~-~~~~~lilGaGGaarai~~aL~~~G~~--~i~I~nR~----~~~a~------- 160 (272)
T PRK12550 103 YNTDY--------IAIAQLLEEYQVP-PDAVVALRGSGGMAKAVAAALRDAGFT--DGTIVARN----EKTGK------- 160 (272)
T ss_pred EECCH--------HHHHHHHHHCCCC-CCCEEEEECCCHHHHHHHHHHHHCCCC--EEEEEECC----HHHHH-------
T ss_conf 93778--------9999999970888-677389973623389999999976998--79999899----89999-------
Q ss_pred HHHHCCCCCCHHH-HCCCCCEEEECCCCCC----------CCHHHHHHCCCCCEEEEEC-CC
Q ss_conf 7745088988888-6058837862578877----------8988997218997799917-87
Q gi|254780137|r 254 VYAQKSGPKPLSE-TMNNADVFLGLSVAGA----------LDPAILKFMAEKPLIMVLA-NP 303 (779)
Q Consensus 254 ~~a~~~~~~~l~e-a~~~adv~iG~S~~g~----------~t~e~v~~M~~~PiIfaLs-NP 303 (779)
.+++........+ ....+|++|-++--|. |.++.+ .+..+||=+. ||
T Consensus 161 ~L~~~~~~~~~~~~~~~~~dliINaTpvGm~~~~~~~~~~~~~~~l---~~~~~v~D~vY~P 219 (272)
T PRK12550 161 ALAELYGYEWRPDLGGIEADLLVNVTPIGMAGGPEADKLAFSEAEI---DAASVVFDVVALP 219 (272)
T ss_pred HHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHC---CCCCEEEEEECCC
T ss_conf 9998739733464334668979966766557897534588997885---8887899974389
No 92
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=95.14 E-value=0.27 Score=27.94 Aligned_cols=210 Identities=13% Similarity=0.129 Sum_probs=123.4
Q ss_pred HHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHC-CCCCEEEHHHCCCCHHHHHHHHHHHHHCCCCCCCCC---CCHHHH
Q ss_conf 8999986269852654238898899999998708-884606222064801579999999871894216877---218999
Q gi|254780137|r 109 KAVLFKKFAGINVFDIEINAKDVDTMVSTIVALE-PTFGGINLEDIKAPECFEVERILSQKLKIPFLHDDQ---HGTAVT 184 (779)
Q Consensus 109 K~~L~k~~agid~~~i~~~~~d~~e~i~~v~~~~-p~fg~i~lEDi~~p~~f~i~~~l~~~~~ipvf~DD~---qGTa~v 184 (779)
+--|.+..++.|++=+--.++=..|+++....+- =...|+-++.|- .+.+++ ..|+|+|--- ..+|=-
T Consensus 31 ~~el~~~i~~~d~livrs~t~v~~~~l~~a~~LK~I~r~GvG~DnID-------~~aa~~-~GI~V~ntP~~n~~svAE~ 102 (524)
T PRK13581 31 KEELLEIIGDYDALIVRSATKVTAEVIEAAKNLKVIGRAGVGVDNVD-------IPAATR-RGIIVVNAPTGNTISAAEH 102 (524)
T ss_pred HHHHHHHHCCCCEEEECCCCCCCHHHHHCCCCCEEEEECCCCCCHHC-------HHHHHH-CCCEEEECCCCCCHHHHHH
T ss_conf 99999884799699987899829999926999769998881675116-------999987-8998994899772889999
Q ss_pred HHHHHHHHHH------------------HHCCCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCC
Q ss_conf 9999999999------------------7098822411787425425678999999819885758999559603078733
Q gi|254780137|r 185 VTAATLNGMK------------------LVGKKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREK 246 (779)
Q Consensus 185 ~lA~llnAl~------------------~~gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~ 246 (779)
+++-+|+.+| ..|..|...++-+.|.|.-|..+++.+..+|+ +++..|-.
T Consensus 103 ~i~l~l~l~R~i~~~~~~~~~g~W~r~~~~G~eL~gktlGIiG~G~IG~~vA~~~~~fgm---~Vi~yDP~--------- 170 (524)
T PRK13581 103 TIALMLALARNIPQADASLKAGKWERKKFMGVELYGKTLGVIGLGRIGSEVAKRAKAFGM---KVIAYDPY--------- 170 (524)
T ss_pred HHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCC---EEEEECCC---------
T ss_conf 999999984897799999983996755656621369889997767578999999985497---47887776---------
Q ss_pred CCCHHHHHHHHCCCCCCHHHHCCCCCEEEE-C----CCCCCCCHHHHHHCCCCCEEEEECCCCCCCCHH-HHHHHCCCEE
Q ss_conf 266788977450889888886058837862-5----788778988997218997799917872009988-9985189879
Q gi|254780137|r 247 KFDKWKSVYAQKSGPKPLSETMNNADVFLG-L----SVAGALDPAILKFMAEKPLIMVLANPNPEAMPD-EIKKVRPDAM 320 (779)
Q Consensus 247 ~~~~~~~~~a~~~~~~~l~ea~~~adv~iG-~----S~~g~~t~e~v~~M~~~PiIfaLsNP~pEi~p~-~a~~~~g~ai 320 (779)
+++.+.+ .......+|.|.++.+|++.- + +..|.+.++.++.|.+..++.=.|--.= +..+ .+..-....|
T Consensus 171 -~~~~~~~-~~gv~~~~l~ell~~sD~IslH~Plt~eT~~li~~~~~~~MK~ga~lIN~aRG~i-Vde~aL~~AL~~g~i 247 (524)
T PRK13581 171 -ISPERAA-QLGVELVELDELLARADFITLHTPLTPETRNLIGAEELAKMKPGVRIINCARGGI-IDEAALAEALKSGKV 247 (524)
T ss_pred -CCHHHHH-HCCCEEEEHHHHHHHCCEEEECCCCCHHHHHHCCHHHHHHCCCCCEEEECCCCCE-ECHHHHHHHHHCCCC
T ss_conf -4466798-7196686089973108899993678615544307999960689986997488760-589999999964997
Q ss_pred ECCCCCC-C---C------CCCCHHHHHHHHH
Q ss_conf 8058878-8---7------7435034556654
Q gi|254780137|r 321 ICTGRSD-F---S------NQVNNVLCFPYIF 342 (779)
Q Consensus 321 vatGrs~-~---p------nQ~NN~l~FPgif 342 (779)
-+-| .| | | -+..|+++.|-|+
T Consensus 248 ~gAa-lDVf~~EP~~~~pL~~~~nvi~TPHiG 278 (524)
T PRK13581 248 AGAA-LDVFEKEPATDSPLFGLPNVIVTPHLG 278 (524)
T ss_pred CEEE-EECCCCCCCCCHHHHCCCCEEECCCCC
T ss_conf 6599-724677899975661799888878787
No 93
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=95.11 E-value=0.1 Score=30.81 Aligned_cols=115 Identities=17% Similarity=0.246 Sum_probs=61.3
Q ss_pred CEEEEECCCHHHHH--HHHHHHH-CCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCCC-------CCCHHHHCCCCC
Q ss_conf 11787425425678--9999998-1988575899955960307873326678897745088-------988888605883
Q gi|254780137|r 203 IKIVTLGAGAAALA--CLNLLVT-MGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKSG-------PKPLSETMNNAD 272 (779)
Q Consensus 203 ~~iv~~GaGaAg~~--~a~ll~~-~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~~-------~~~l~ea~~~ad 272 (779)
.||+|.||||+-+. +-.++.. -...-..++++|.+. +.|-+.+...-+.+.+..+ ..++.+|++|||
T Consensus 1 mKI~iIGaGS~~tp~lv~~l~~~~~~l~~~ei~L~DID~---~~rL~~~~~la~~~~~~~~~~~~v~~ttd~~eAl~gAD 77 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDE---EEKLEIVGALAKRMVKKAGLPIKVHLTTDRREALEGAD 77 (419)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCH---HHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHCCCC
T ss_conf 979998974665589999998454348988899989985---99999999999999996099808999679999836999
Q ss_pred EEEECC-CC--------------------------CCCC--------HHHHHHC---CCCCEEEEECCCCCCCCHHHHHH
Q ss_conf 786257-88--------------------------7789--------8899721---89977999178720099889985
Q gi|254780137|r 273 VFLGLS-VA--------------------------GALD--------PAILKFM---AEKPLIMVLANPNPEAMPDEIKK 314 (779)
Q Consensus 273 v~iG~S-~~--------------------------g~~t--------~e~v~~M---~~~PiIfaLsNP~pEi~p~~a~~ 314 (779)
..+-.- .+ |.|. -++.+.| |++..+|=-+||...++-...+.
T Consensus 78 fVi~~irvGg~~~r~~De~Ip~kyGvigQET~G~GG~~~alRtiP~~l~ia~~i~e~cP~AwliNytNP~~ivt~a~~r~ 157 (419)
T cd05296 78 FVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELAPDAWLINFTNPAGIVTEAVLRH 157 (419)
T ss_pred EEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHC
T ss_conf 99998733793076776543876497653476747999876228999999999998699838997378799999999966
Q ss_pred HCCCEEE
Q ss_conf 1898798
Q gi|254780137|r 315 VRPDAMI 321 (779)
Q Consensus 315 ~~g~aiv 321 (779)
. +..+|
T Consensus 158 ~-~~k~v 163 (419)
T cd05296 158 T-GDRVI 163 (419)
T ss_pred C-CCCEE
T ss_conf 8-99889
No 94
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=94.99 E-value=0.3 Score=27.67 Aligned_cols=88 Identities=17% Similarity=0.215 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHCCCHHHCEEEEECCCHH-HHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCCCCCC
Q ss_conf 99999999997098822411787425425-67899999981988575899955960307873326678897745088988
Q gi|254780137|r 185 VTAATLNGMKLVGKKFSDIKIVTLGAGAA-ALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKSGPKP 263 (779)
Q Consensus 185 ~lA~llnAl~~~gk~l~~~~iv~~GaGaA-g~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~~~~~ 263 (779)
++.+++--|+.-+.+++-.++++.|.+.= |.-.+.||...+. .+++|+++- ..
T Consensus 11 t~~av~~ll~~y~i~l~Gk~vvVvGrS~~VG~Pla~lL~~~~a---tVt~~hs~t-----------------------~~ 64 (140)
T cd05212 11 VAKAVKELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGA---TVYSCDWKT-----------------------IQ 64 (140)
T ss_pred HHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEECCCC-----------------------CC
T ss_conf 7999999999809999999999999981249999999997889---899946999-----------------------59
Q ss_pred HHHHCCCCCEEEECCC-CCCCCHHHHHHCCCCCEEEEEC
Q ss_conf 8886058837862578-8778988997218997799917
Q gi|254780137|r 264 LSETMNNADVFLGLSV-AGALDPAILKFMAEKPLIMVLA 301 (779)
Q Consensus 264 l~ea~~~adv~iG~S~-~g~~t~e~v~~M~~~PiIfaLs 301 (779)
|.+.++.||++|-..+ ++.++.||++ +..+|+-..
T Consensus 65 l~~~~~~ADIvI~a~G~p~~i~~~~vk---~GavvIDvG 100 (140)
T cd05212 65 LQSKVHDADVVVVGSPKPEKVPTEWIK---PGATVINCS 100 (140)
T ss_pred HHHHHHHCCEEEECCCCCCCCCHHHCC---CCCEEEEEC
T ss_conf 899852349999816876727897767---998899803
No 95
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=94.99 E-value=0.08 Score=31.60 Aligned_cols=108 Identities=13% Similarity=0.202 Sum_probs=65.6
Q ss_pred HHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCCC--CCCHHHHCCCCCEEEEC
Q ss_conf 2241178742542567899999981988575899955960307873326678897745088--98888860588378625
Q gi|254780137|r 200 FSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKSG--PKPLSETMNNADVFLGL 277 (779)
Q Consensus 200 l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~~--~~~l~ea~~~adv~iG~ 277 (779)
+..-||.+.|+|.-|..++-++...+.. .+.++|.+.-...+..-++.+-...+-..+. ..+..+.++++||.+=+
T Consensus 5 ~~~~KV~IIGaG~VG~~~A~~l~~~~l~--eivLiDi~~~~a~g~a~Dl~h~~~~~~~~~~v~~~~dy~~~~~aDiVVit 82 (322)
T PTZ00082 5 IPRKKISLIGSGNIGGVMAYLIQLKNLA--DVVLFDIVPNIPAGKALDIMHANVMAGSNCKVIGTNSYDDIAGSDVVIVT 82 (322)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHCCCCC--EEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEEECCCHHHHCCCCEEEEC
T ss_conf 1798299989698999999999638997--79999788980088999876636446888579837999997799999989
Q ss_pred CC----CCCC----C--------HHHHHHC-------CCCCEEEEECCCCCCCCH
Q ss_conf 78----8778----9--------8899721-------899779991787200998
Q gi|254780137|r 278 SV----AGAL----D--------PAILKFM-------AEKPLIMVLANPNPEAMP 309 (779)
Q Consensus 278 S~----~g~~----t--------~e~v~~M-------~~~PiIfaLsNP~pEi~p 309 (779)
.+ ||-- + -+++++. +++.|+.-.|||.--+++
T Consensus 83 AG~~~kpg~t~~~~~R~dLl~~Na~I~~~i~~~i~~~~p~aiiivvsNPvDv~t~ 137 (322)
T PTZ00082 83 AGLAKAPGKSDDEWNRDDLLPLNAKIMIEVGENIKKYCPNAFVIVITNPLDVMVQ 137 (322)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHH
T ss_conf 8887789998765678899998899999999998740998359974892699999
No 96
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=94.99 E-value=0.088 Score=31.32 Aligned_cols=103 Identities=17% Similarity=0.151 Sum_probs=55.9
Q ss_pred HHHHHHHHHHCCCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCC-------
Q ss_conf 9999999970988224117874254256789999998198857589995596030787332667889774508-------
Q gi|254780137|r 187 AATLNGMKLVGKKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKS------- 259 (779)
Q Consensus 187 A~llnAl~~~gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~------- 259 (779)
++...+++..+.+ ...+++++|+|.-|+..+.+...+|.. +++++|+ ++.+..+|+.-
T Consensus 163 ~~~~~~~~~~~~~-~g~~VlV~GaG~iGl~a~~~ak~~Ga~--~Vi~~d~------------~~~rl~~A~~lGa~~~i~ 227 (358)
T TIGR03451 163 AGLGAAVNTGGVK-RGDSVAVIGCGGVGDAAIAGAALAGAS--KIIAVDI------------DDRKLEWAREFGATHTVN 227 (358)
T ss_pred HHHHHHHHHCCCC-CCCEEEEECCCHHHHHHHHHHHHCCCC--EEEEEEC------------CHHHHHHHHHCCCEEEEC
T ss_conf 5468898640799-998899967376999999999983991--8999919------------889999999659909973
Q ss_pred -CCCCHHHHCC------CCCEEEECCCCCCCCHHHHHHCCCCCEEEEECCCC
Q ss_conf -8988888605------88378625788778988997218997799917872
Q gi|254780137|r 260 -GPKPLSETMN------NADVFLGLSVAGALDPAILKFMAEKPLIMVLANPN 304 (779)
Q Consensus 260 -~~~~l~ea~~------~adv~iG~S~~g~~t~e~v~~M~~~PiIfaLsNP~ 304 (779)
....+.+.++ |+|+.+-+++....-++-++.+.+.-.|--+..|.
T Consensus 228 ~~~~~~~~~v~~~t~g~G~Dvvie~~G~~~~~~~al~~~~~gG~iv~~G~~~ 279 (358)
T TIGR03451 228 SSGTDPVEAIRALTGGFGADVVIDAVGRPETYKQAFYARDLAGTVVLVGVPT 279 (358)
T ss_pred CCCCCHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 9987889999998589887499999999899999999762796999992258
No 97
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=94.93 E-value=0.084 Score=31.45 Aligned_cols=201 Identities=19% Similarity=0.320 Sum_probs=106.4
Q ss_pred CCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHH-CCCCCEEEHHHCCCCHH---HHHHHHHHHH------HCCC
Q ss_conf 300100899998626985265423889889999999870-88846062220648015---7999999987------1894
Q gi|254780137|r 103 KPVMEGKAVLFKKFAGINVFDIEINAKDVDTMVSTIVAL-EPTFGGINLEDIKAPEC---FEVERILSQK------LKIP 172 (779)
Q Consensus 103 ~pvmeGK~~L~k~~agid~~~i~~~~~d~~e~i~~v~~~-~p~fg~i~lEDi~~p~~---f~i~~~l~~~------~~ip 172 (779)
-|.|- -.+|++ -|+|..-.-.+.. ||+|-++++.+ .+.|.|.|. .-|+= +...+++.++ .|--
T Consensus 21 SP~~H--n~~~~~-lGl~~~Y~a~~v~-~~~l~~~v~~~~~~g~~G~NV---TiP~Ke~~~~~lD~l~~~A~~iGAVNTl 93 (283)
T COG0169 21 SPRMH--NAAFRA-LGLDYVYLAFEVP-PEDLPEAVSGIRALGFRGLNV---TIPFKEAALPLLDELSPRARLIGAVNTL 93 (283)
T ss_pred CHHHH--HHHHHH-CCCCCEEEEEECC-HHHHHHHHHHHHHCCCCEEEE---CCCCHHHHHHHHHCCCHHHHHHCCCEEE
T ss_conf 88999--999998-1998567776359-899999999987448871698---7756888999874489989971871489
Q ss_pred CCCCCC--CCHHHHHHHHHHHHHHHHC--CCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCC
Q ss_conf 216877--2189999999999999709--882241178742542567899999981988575899955960307873326
Q gi|254780137|r 173 FLHDDQ--HGTAVTVTAATLNGMKLVG--KKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKF 248 (779)
Q Consensus 173 vf~DD~--qGTa~v~lA~llnAl~~~g--k~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~ 248 (779)
++-||- .|.-- =.-|+..+|+-.+ ...+..++++.|||-|+-+++--|...|++ +|++++| +..|.
T Consensus 94 ~~~~~g~l~G~NT-D~~G~~~~L~~~~~~~~~~~~~vlilGAGGAarAv~~aL~~~g~~--~i~V~NR----t~~ra--- 163 (283)
T COG0169 94 VREDDGKLRGYNT-DGIGFLRALKEFGLPVDVTGKRVLILGAGGAARAVAFALAEAGAK--RITVVNR----TRERA--- 163 (283)
T ss_pred EECCCCEEEEECC-CHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCC--EEEEEEC----CHHHH---
T ss_conf 9766997999747-889999999850777566788899989768999999999986998--7999958----88999---
Q ss_pred CHHHHHHHHCCC------CCCHHHHCCCCCEEEECCCCCCCCHH-----HHHHCCCCCEEEEE-CCCCCCCCH--HHHHH
Q ss_conf 678897745088------98888860588378625788778988-----99721899779991-787200998--89985
Q gi|254780137|r 249 DKWKSVYAQKSG------PKPLSETMNNADVFLGLSVAGALDPA-----ILKFMAEKPLIMVL-ANPNPEAMP--DEIKK 314 (779)
Q Consensus 249 ~~~~~~~a~~~~------~~~l~ea~~~adv~iG~S~~g~~t~e-----~v~~M~~~PiIfaL-sNP~pEi~p--~~a~~ 314 (779)
.+....|..... ...+. ....+|++|-++..|.--.+ -.....+.++++=+ -||. -|| +.|++
T Consensus 164 ~~La~~~~~~~~~~~~~~~~~~~-~~~~~dliINaTp~Gm~~~~~~~~~~~~~l~~~~~v~D~vY~P~--~TplL~~A~~ 240 (283)
T COG0169 164 EELADLFGELGAAVEAAALADLE-GLEEADLLINATPVGMAGPEGDSPVPAELLPKGAIVYDVVYNPL--ETPLLREARA 240 (283)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCC-CCCCCCEEEECCCCCCCCCCCCCCCCHHHCCCCCEEEEECCCCC--CCHHHHHHHH
T ss_conf 99999864505631102455412-35545789978878777887888886776686778998111887--8889999998
Q ss_pred HCCCEEECCCC
Q ss_conf 18987980588
Q gi|254780137|r 315 VRPDAMICTGR 325 (779)
Q Consensus 315 ~~g~aivatGr 325 (779)
.|.. +-.|.
T Consensus 241 -~G~~-~idGl 249 (283)
T COG0169 241 -QGAK-TIDGL 249 (283)
T ss_pred -CCCC-EECCH
T ss_conf -5990-78739
No 98
>pfam02423 OCD_Mu_crystall Ornithine cyclodeaminase/mu-crystallin family. This family contains the bacterial Ornithine cyclodeaminase enzyme EC:4.3.1.12, which catalyses the deamination of ornithine to proline. This family also contains mu-Crystallin the major component of the eye lens in several Australian marsupials, mRNA for this protein has also been found in human retina.
Probab=94.81 E-value=0.33 Score=27.36 Aligned_cols=135 Identities=21% Similarity=0.261 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHH---
Q ss_conf 89999999999999709882241178742542567899999981988575899955960307873326678897745---
Q gi|254780137|r 181 TAVTVTAATLNGMKLVGKKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQ--- 257 (779)
Q Consensus 181 Ta~v~lA~llnAl~~~gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~--- 257 (779)
|+.=+.|+=--|.|...++ ...++.++|+|.=+..-.+.+.... .-+++++.++. .+..+.+..+...
T Consensus 109 T~~RTaA~sala~~~Lar~-da~~l~iiGaG~QA~~~l~al~~v~-~i~~v~v~~r~-------~~~~~~f~~~~~~~~~ 179 (312)
T pfam02423 109 TALRTAAASAVAAKYLAPP-DASTLAIIGAGAQAEFQAEALSAVL-PIEEIRIYDRD-------PEAAEKFARNLQGKGF 179 (312)
T ss_pred HHHHHHHHHHHHHHHHCCC-CCCEEEEECCCHHHHHHHHHHHHHC-CCCEEEEEECC-------HHHHHHHHHHHHHCCC
T ss_conf 3556778889999974169-9757999646253899999999619-97689999689-------8999999999983499
Q ss_pred -CCCCCCHHHHCCCCCEEEECC-C-C-CCCCHHHHHHCCCCCEEEEECCCCC---CCCHHHHHHHCCCEEECCCCCCCCC
Q ss_conf -088988888605883786257-8-8-7789889972189977999178720---0998899851898798058878877
Q gi|254780137|r 258 -KSGPKPLSETMNNADVFLGLS-V-A-GALDPAILKFMAEKPLIMVLANPNP---EAMPDEIKKVRPDAMICTGRSDFSN 330 (779)
Q Consensus 258 -~~~~~~l~ea~~~adv~iG~S-~-~-g~~t~e~v~~M~~~PiIfaLsNP~p---Ei~p~~a~~~~g~aivatGrs~~pn 330 (779)
.....+++|++.++||++.++ . . -+|..+|++ +...|.+..--.| |+.++.... .+ ++. |+..
T Consensus 180 ~v~~~~~~~~av~~ADIIvtaT~s~~~P~~~~~~l~---~G~hv~~vGs~~p~~~El~~~~~~~--a~-v~v----D~~~ 249 (312)
T pfam02423 180 EIVACTSAEEAVEGADIVVTVTPDKEFPILKAEWVK---PGVHINAVGADCPGKTELDPDILLR--AD-IFV----DYPP 249 (312)
T ss_pred CEEEECCHHHHHHCCCEEEEEECCCCCCCCCHHHCC---CCCEEEEECCCCCCCCCCCHHHHHC--CC-EEE----CCHH
T ss_conf 659948999997149989997359977500778838---9868997269999704368999820--81-760----6689
Q ss_pred CCCH
Q ss_conf 4350
Q gi|254780137|r 331 QVNN 334 (779)
Q Consensus 331 Q~NN 334 (779)
|+..
T Consensus 250 ~~~~ 253 (312)
T pfam02423 250 QARI 253 (312)
T ss_pred HHHH
T ss_conf 9985
No 99
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=94.73 E-value=0.16 Score=29.57 Aligned_cols=122 Identities=18% Similarity=0.216 Sum_probs=72.6
Q ss_pred HHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCCC--CCCHHHHCCCCCEEEEC
Q ss_conf 2241178742542567899999981988575899955960307873326678897745088--98888860588378625
Q gi|254780137|r 200 FSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKSG--PKPLSETMNNADVFLGL 277 (779)
Q Consensus 200 l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~~--~~~l~ea~~~adv~iG~ 277 (779)
...-||.+.|||.=|..++-++...+.. ..+.++|.+.-..++..-++++- ..|...+. .++ .+.++++||.+=+
T Consensus 4 ~k~~KI~IIGaG~VG~~~a~~l~~~~l~-~el~LiD~~~~~a~g~a~Dl~h~-~~~~~~~~i~~gd-y~~~~daDvVVit 80 (315)
T PRK00066 4 KKHNKVVLVGDGAVGSSYAYALVNQGIA-DELVIIDINKEKAEGDAMDLSHA-VPFTSPTKIYAGD-YSDCKDADLVVIT 80 (315)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCC-CEEEEEECCCCCCHHHHHHHHHH-CCCCCCCEEEECC-HHHHCCCCEEEEC
T ss_conf 7898499999798899999999866998-88999808987107899988854-1236884797399-9996799999989
Q ss_pred CC----CCCC-------CHHHHH----HC---CCCCEEEEECCCCCCCCHHHHHHH--CCCEEECCC
Q ss_conf 78----8778-------988997----21---899779991787200998899851--898798058
Q gi|254780137|r 278 SV----AGAL-------DPAILK----FM---AEKPLIMVLANPNPEAMPDEIKKV--RPDAMICTG 324 (779)
Q Consensus 278 S~----~g~~-------t~e~v~----~M---~~~PiIfaLsNP~pEi~p~~a~~~--~g~aivatG 324 (779)
.+ +|-- +-++++ .+ +++.|+.-.+||.--+++...+.+ ....+++||
T Consensus 81 AG~~~k~g~tR~dll~~N~~I~~~i~~~i~~~~p~~i~ivvtNPvDvmt~~~~k~sg~p~~rViG~G 147 (315)
T PRK00066 81 AGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPVDILTYATWKFSGFPKERVIGSG 147 (315)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHCCCCHHEEEEC
T ss_conf 9998999998789998789999998877642488539999369189999999997499802256414
No 100
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.66 E-value=0.24 Score=28.35 Aligned_cols=95 Identities=13% Similarity=0.159 Sum_probs=54.7
Q ss_pred HCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCE-EECCCC------------CCCCHH---HHHHHHCCCCCCHH
Q ss_conf 41178742542567899999981988575899955960-307873------------326678---89774508898888
Q gi|254780137|r 202 DIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGL-VYEGRE------------KKFDKW---KSVYAQKSGPKPLS 265 (779)
Q Consensus 202 ~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gl-i~~~r~------------~~~~~~---~~~~a~~~~~~~l~ 265 (779)
=.||.+.|||.=|.+||-++...|. +++++|..-- +...+. ..+.+. ....++-+-..++.
T Consensus 3 i~~VaViGaG~MG~gIA~~~a~~G~---~V~l~D~~~~~l~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~dl~ 79 (288)
T PRK08293 3 IKKVTVAGAGVLGSQIAFQTAFKGF---DVTIYDISEEALDAAKRRLAKLADRYVRDLHLTDEAFAAAAKNRITFTTDLA 79 (288)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC---CEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCHH
T ss_conf 5789998978899999999995799---2899989889999999999999999997059991789999980773058989
Q ss_pred HHCCCCCEEEECCCC-CCCCHHHHHHC---CCCCEEEE
Q ss_conf 860588378625788-77898899721---89977999
Q gi|254780137|r 266 ETMNNADVFLGLSVA-GALDPAILKFM---AEKPLIMV 299 (779)
Q Consensus 266 ea~~~adv~iG~S~~-g~~t~e~v~~M---~~~PiIfa 299 (779)
++++++|+.|=.-.- --.+.++.+.. ++.-.||+
T Consensus 80 ~a~~~aDlViEav~E~l~iK~~lf~~le~~~~~~~Ila 117 (288)
T PRK08293 80 QAVKDADLVIEAVPEDPEIKGDFYEQLAEVAPEKTIFA 117 (288)
T ss_pred HHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 98466999999780879999999999997467766998
No 101
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=94.60 E-value=0.11 Score=30.71 Aligned_cols=41 Identities=24% Similarity=0.387 Sum_probs=36.2
Q ss_pred CCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEE
Q ss_conf 8822411787425425678999999819885758999559603
Q gi|254780137|r 198 KKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLV 240 (779)
Q Consensus 198 k~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli 240 (779)
++|.+.+|++.|+|.=|..++..|..+|+. ++.++|.+-+-
T Consensus 20 ~kL~~s~VlIVGaGGLGs~~a~~La~aGVG--~l~ivD~D~Ve 60 (337)
T PRK12475 20 RKIREKHVLIIGAGALGAANAEALVRAGIG--KLTIADRDYVE 60 (337)
T ss_pred HHHHCCCEEEECCCHHHHHHHHHHHHCCCC--EEEEEECCEEC
T ss_conf 998639699997777789999999982898--69998499831
No 102
>PRK13243 glyoxylate reductase; Reviewed
Probab=94.59 E-value=0.37 Score=27.01 Aligned_cols=236 Identities=15% Similarity=0.157 Sum_probs=136.6
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCC-CCCEEEHHHCCCCHHHHHHHHHHHHHCCCCCCCCC---CCHHH
Q ss_conf 089999862698526542388988999999987088-84606222064801579999999871894216877---21899
Q gi|254780137|r 108 GKAVLFKKFAGINVFDIEINAKDVDTMVSTIVALEP-TFGGINLEDIKAPECFEVERILSQKLKIPFLHDDQ---HGTAV 183 (779)
Q Consensus 108 GK~~L~k~~agid~~~i~~~~~d~~e~i~~v~~~~p-~fg~i~lEDi~~p~~f~i~~~l~~~~~ipvf~DD~---qGTa~ 183 (779)
-.-.|.+...|.|++=+...++=..++++....+-- .-.|+-+..|- .+.+++ .+|+|.|-=- +.+|=
T Consensus 35 ~~~~l~~~i~~~d~li~~~~~~i~~~~l~~ap~LK~I~~~gvG~D~ID-------~~~a~~-~gI~V~ntpg~~~~sVAE 106 (333)
T PRK13243 35 PREVLLEKVKDVDALVTMLSERIDAEVFEAAPRLRIVANYAVGYDNID-------VEEATK-RGIYVTNTPGVLTEATAD 106 (333)
T ss_pred CHHHHHHHHCCCCEEEECCCCCCCHHHHHCCCCCEEEEECCCCCCCCC-------HHHHHH-CCCEEEECCCCCCHHHHH
T ss_conf 999999986798299985888588999946999809988574643305-------999996-997899689968479999
Q ss_pred HHHHHHHHHHHH-------------------------HCCCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCC
Q ss_conf 999999999997-------------------------0988224117874254256789999998198857589995596
Q gi|254780137|r 184 TVTAATLNGMKL-------------------------VGKKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEG 238 (779)
Q Consensus 184 v~lA~llnAl~~-------------------------~gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~G 238 (779)
.+++-+|+..|- .|..|...++-+.|.|.=|..+++++..+|+ +++..|+..
T Consensus 107 ~~~~liL~~~R~i~~~~~~~r~g~w~~~~~~~~p~~~~g~eL~gktlGIiG~G~IG~~vak~~~~fgm---~V~~~d~~~ 183 (333)
T PRK13243 107 FAFALLLATARRVVEADKFVRSGEWKRRGVAWHPMMFLGYDVYGKTIGIVGFGRIGQAIARRAKGFGM---RILYYSRTR 183 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCC---EEEEECCCC
T ss_conf 99999999986499999999849866456666763445646678899997925668999999997699---999989989
Q ss_pred EEECCCCCCCCHHHHHHHHCCCCCCHHHHCCCCCEEEEC---C--CCCCCCHHHHHHCCCCCEEEEECCCCCCCCHHHHH
Q ss_conf 030787332667889774508898888860588378625---7--88778988997218997799917872009988998
Q gi|254780137|r 239 LVYEGREKKFDKWKSVYAQKSGPKPLSETMNNADVFLGL---S--VAGALDPAILKFMAEKPLIMVLANPNPEAMPDEIK 313 (779)
Q Consensus 239 li~~~r~~~~~~~~~~~a~~~~~~~l~ea~~~adv~iG~---S--~~g~~t~e~v~~M~~~PiIfaLsNP~pEi~p~~a~ 313 (779)
.. +..+ .+ .....+|.|.++.+|++.-. + ..+.|.++.++.|-+..++-=.|-=. =+..+...
T Consensus 184 ------~~--~~~~-~~--~~~~~~l~ell~~sDiIslh~Plt~eT~~li~~~~~~~MK~~a~lIN~aRG~-iVde~aL~ 251 (333)
T PRK13243 184 ------KP--EVEK-EL--GAEYRPLEDLLRESDFVVLAVPLTKETYHMINEERLKLMKKTAILVNIARGK-VVDTKALV 251 (333)
T ss_pred ------CH--HHHH-HC--CCEEECHHHHHHHCCEEEECCCCCCCCCCCCCHHHHHHCCCCEEEEECCCCH-HCCHHHHH
T ss_conf ------86--6787-60--9688119997421652664255860134613699997179981999858840-03999999
Q ss_pred -HHCCCEEECCCC-----CCCC----CCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf -518987980588-----7887----743503455665456751373002678999999999987203
Q gi|254780137|r 314 -KVRPDAMICTGR-----SDFS----NQVNNVLCFPYIFRGALDCGATAITEEMKVAAARAMAVLVRD 371 (779)
Q Consensus 314 -~~~g~aivatGr-----s~~p----nQ~NN~l~FPgif~Gal~~~A~~Itd~M~~aAa~alA~la~~ 371 (779)
.-....|.+-|- -+.| -+..|++.-|-|+-. ...-.+.|-.-+++-|-+...-
T Consensus 252 ~aL~~g~i~gA~lDVf~~EP~~~~~L~~~~nvi~TPHia~~-----T~ea~~~~~~~~~~ni~~~l~G 314 (333)
T PRK13243 252 KALKEGWIAGAGLDVFEEEPYYNEELFSLDNVVLAPHIGSA-----TFEAREGMAELVAENLIAFKRG 314 (333)
T ss_pred HHHHHCCCEEEEEECCCCCCCCCCHHHCCCCEEECCCCCCC-----HHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99980991389984799999999357659999998844415-----4999999999999999999869
No 103
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.59 E-value=0.28 Score=27.84 Aligned_cols=85 Identities=15% Similarity=0.215 Sum_probs=50.0
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCCCCCCHHHHCCCCCEEEECCCCCCC
Q ss_conf 17874254256789999998198857589995596030787332667889774508898888860588378625788778
Q gi|254780137|r 204 KIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKSGPKPLSETMNNADVFLGLSVAGAL 283 (779)
Q Consensus 204 ~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~~~~~l~ea~~~adv~iG~S~~g~~ 283 (779)
||+++|.|-.|++++++|.+.|. ++++.|.+-. .+ ....+......-......+.+.++|+++-.++=..-
T Consensus 19 kvlV~GlG~SG~s~a~~L~~~G~---~v~~~D~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SPGI~~~ 89 (476)
T PRK00141 19 RVLVAGAGVSGLGIAKMLSELGC---DVVVADDNET---QR---HMLIEVVDVADISTAQASDALDSYSIVVTSPGWRPD 89 (476)
T ss_pred CEEEEEECHHHHHHHHHHHHCCC---EEEEEECCCC---HH---HHHHHHCCCCEECCCCHHHHHCCCCEEEECCCCCCC
T ss_conf 88999227889999999997899---7999989987---03---578874798565155306564689999989978997
Q ss_pred CHHHHHHCCCC-CEE
Q ss_conf 98899721899-779
Q gi|254780137|r 284 DPAILKFMAEK-PLI 297 (779)
Q Consensus 284 t~e~v~~M~~~-PiI 297 (779)
.+++.+..... |||
T Consensus 90 ~p~l~~a~~~gi~vi 104 (476)
T PRK00141 90 SPLLVDAQSAGLEVI 104 (476)
T ss_pred CHHHHHHHHCCCCEE
T ss_conf 999999998799577
No 104
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF; InterPro: IPR012731 Members of the HesA/MoeB/ThiF family of proteins (IPR000594 from INTERPRO) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees. The Escherichia coli ThiF and MoeB proteins are seemingly more closely related than the E. coli ThiF and Campylobacter (for example) ThiF. This entry represents the more widely distributed clade of ThiF proteins as found in E. coli..
Probab=94.52 E-value=0.057 Score=32.62 Aligned_cols=99 Identities=18% Similarity=0.197 Sum_probs=66.6
Q ss_pred CCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEE---------ECCCCCCCCHHHHHHHHC------C---
Q ss_conf 8822411787425425678999999819885758999559603---------078733266788977450------8---
Q gi|254780137|r 198 KKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLV---------YEGREKKFDKWKSVYAQK------S--- 259 (779)
Q Consensus 198 k~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli---------~~~r~~~~~~~~~~~a~~------~--- 259 (779)
++|.+-+|++.|||+=|..++.+|..+|+. +|.++|.+-+= |..++=..+.-|.+.+++ .
T Consensus 17 ~rL~~s~VLiiGaGgLGs~~~~~LA~AGVG--~i~i~D~D~V~~SNLqRQ~Lf~e~Dv~~~~pK~e~aa~~l~~LN~~i~ 94 (210)
T TIGR02356 17 QRLLASHVLIIGAGGLGSPAALYLAAAGVG--TITIVDDDHVDLSNLQRQILFAEEDVGTLRPKVEAAAERLRELNSDIR 94 (210)
T ss_pred HHHHHCCEEEEEECHHHHHHHHHHHHCCCC--EEEEEECCEECHHHCHHHHHHCHHHHHCCCHHHHHHHHHHHHHCCCCE
T ss_conf 998608659997261456899999828883--789985167701012055430324420131589999999985388968
Q ss_pred --------CCCCHHHHCCCCC--EEEECCCCCCCCHHHHHHCC---CCCEEEE
Q ss_conf --------8988888605883--78625788778988997218---9977999
Q gi|254780137|r 260 --------GPKPLSETMNNAD--VFLGLSVAGALDPAILKFMA---EKPLIMV 299 (779)
Q Consensus 260 --------~~~~l~ea~~~ad--v~iG~S~~g~~t~e~v~~M~---~~PiIfa 299 (779)
+...+.+.++.+| +.|=+|- +-=|+=.|-.-| ..|-||+
T Consensus 95 v~a~~~~vt~~~~~~~i~~~DPdlVlDc~D-Nf~tryliNdaC~~~~~PlI~a 146 (210)
T TIGR02356 95 VTALKERVTAENLELLIENVDPDLVLDCTD-NFATRYLINDACQALGIPLISA 146 (210)
T ss_pred EEEEEECCCHHHHHHHHHCCCCCEEEECCC-CHHHHHHHHHHHHHHCCCEEEE
T ss_conf 998542027799999962389968961566-8778899999999847986999
No 105
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=94.43 E-value=0.4 Score=26.75 Aligned_cols=92 Identities=20% Similarity=0.246 Sum_probs=70.4
Q ss_pred CCHHHHHHHHHHHHHHHHCCCHHHCEEEEECCCH-HHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHH
Q ss_conf 2189999999999999709882241178742542-567899999981988575899955960307873326678897745
Q gi|254780137|r 179 HGTAVTVTAATLNGMKLVGKKFSDIKIVTLGAGA-AALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQ 257 (779)
Q Consensus 179 qGTa~v~lA~llnAl~~~gk~l~~~~iv~~GaGa-Ag~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~ 257 (779)
.+-.-.+..|.+.-|+-.+.+++..++|+.|.+. -|.-.+.||...++ .+.+|+++-
T Consensus 21 ~~~~PcTp~ai~~ll~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~a---tVt~chs~T------------------- 78 (168)
T cd01080 21 PGFIPCTPAGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNA---TVTVCHSKT------------------- 78 (168)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHCCC---EEEEECCCC-------------------
T ss_conf 9886984999999999949887785699987873008999999984899---799976898-------------------
Q ss_pred CCCCCCHHHHCCCCCEEEECCC-CCCCCHHHHHHCCCCCEEEE
Q ss_conf 0889888886058837862578-87789889972189977999
Q gi|254780137|r 258 KSGPKPLSETMNNADVFLGLSV-AGALDPAILKFMAEKPLIMV 299 (779)
Q Consensus 258 ~~~~~~l~ea~~~adv~iG~S~-~g~~t~e~v~~M~~~PiIfa 299 (779)
..|.+.++.||++|-..+ ++.++.+|++ +..+|.-
T Consensus 79 ----~~l~~~~~~ADIvIsA~G~~~li~~~~vk---~gavvID 114 (168)
T cd01080 79 ----KNLKEHTKQADIVIVAVGKPGLVKGDMVK---PGAVVID 114 (168)
T ss_pred ----CCHHHHHHHCCEEEEECCCCCCCCHHHCC---CCCEEEE
T ss_conf ----89799741045355415876637899958---9988996
No 106
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=94.42 E-value=0.4 Score=26.75 Aligned_cols=226 Identities=19% Similarity=0.203 Sum_probs=107.2
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCCCCCCHHHHCCCCCEEEECCCCCC
Q ss_conf 11787425425678999999819885758999559603078733266788977450889888886058837862578877
Q gi|254780137|r 203 IKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKSGPKPLSETMNNADVFLGLSVAGA 282 (779)
Q Consensus 203 ~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~~~~~l~ea~~~adv~iG~S~~g~ 282 (779)
.||.|.|+|.=|-++++-|...+...++|+++|+. .+..+..+..+.. .-..+..++++.+|+.+-+-.|..
T Consensus 3 ~kI~~IG~G~Mg~Aii~gl~~~~~~~~~i~v~~r~-------~~~~~~l~~~~~v-~~~~~~~~~~~~~diIiLaVKP~~ 74 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPS-------PEKRAALAEEYGV-RAATDNQEAAQEADVVVLAVKPQV 74 (267)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCC-------HHHHHHHHHHHCC-EEECCHHHHHHCCCEEEEEECHHH
T ss_conf 87999866899999999999779894528997799-------9999999997396-785786988721999999728789
Q ss_pred CCHHHHHHCCC--CCEEEEECCCC---------------CCCCHHHHHHH-CCCEEECCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 89889972189--97799917872---------------00998899851-89879805887887743503455665456
Q gi|254780137|r 283 LDPAILKFMAE--KPLIMVLANPN---------------PEAMPDEIKKV-RPDAMICTGRSDFSNQVNNVLCFPYIFRG 344 (779)
Q Consensus 283 ~t~e~v~~M~~--~PiIfaLsNP~---------------pEi~p~~a~~~-~g~aivatGrs~~pnQ~NN~l~FPgif~G 344 (779)
+ +++++...+ +++|--+.--. -.++|...... .|-..+..+..-.+.+.+.+. -||..
T Consensus 75 ~-~~vl~~l~~~~~~~iISv~AGi~i~~l~~~l~~~~~ivR~MPN~~~~v~~G~t~i~~~~~~~~~~~~~v~---~lf~~ 150 (267)
T PRK11880 75 M-EDVLSELKGSLDKLVVSIAAGITLARLERALGADLPVVRAMPNTPALVGAGMTALCANALVSEEQRAFAL---ELLSA 150 (267)
T ss_pred H-HHHHHHHHHHHCCEEEEECCCCCHHHHHHHHCCCCHHHHCCCCHHHHHCCCCEEEECCCCCCHHHHHHHH---HHHHH
T ss_conf 9-9999998765087899916999999999886368703420874899970786466259999999999999---99972
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 75137300267899999999998720331366774138767666752236665467786798888999874213223543
Q gi|254780137|r 345 ALDCGATAITEEMKVAAARAMAVLVRDVPPDVVFDNFAKESPVFGPNYLIPSPFDPNLISYIAPAVAKAAEEAGVASSPI 424 (779)
Q Consensus 345 al~~~A~~Itd~M~~aAa~alA~la~~~~~~~~~~~~~~~~~~~g~~yiiP~~fd~r~~~~va~AVa~aA~~sGvAr~pi 424 (779)
+ -....+.+|-.+-++-||++. ||-| +..+..|.++++++.|+.+.
T Consensus 151 -~-G~~~~v~~E~~~d~~TalsGs--------------------GPAy----------~~~~~eal~~a~v~~Gl~~~-- 196 (267)
T PRK11880 151 -V-GEVVWVDDESQMDAVTAVSGS--------------------GPAY----------VFLFIEALADAGVKLGLPRE-- 196 (267)
T ss_pred -C-CCEEEECCHHCCCHHHHHHCC--------------------CHHH----------HHHHHHHHHHHHHHCCCCHH--
T ss_conf -5-867998842102211345177--------------------1799----------99999999999998699799--
Q ss_pred CCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCC
Q ss_conf 2258999999986201256889999997215894699824774046799999985275
Q gi|254780137|r 425 EDYEVYRDSLKRFSFPGRSLMKKIFSIAKGTDSKRILFSAGEDERVLRATQILIKENI 482 (779)
Q Consensus 425 ~d~~~Y~~~L~~rl~~s~~~mr~i~~~AK~~~pKRIVfaEgeD~rVLrAA~~~~eeGi 482 (779)
++++--..-..+-...+.+.-.+-..- .++|.=|.|.- .++...+.+.|+
T Consensus 197 ---~A~~l~~qt~~G~a~ll~~~~~~p~~L--~~~V~SpgGtT---~~gl~~Le~~g~ 246 (267)
T PRK11880 197 ---TARKLAAQTVLGAAKLLLESGEHPAEL--RDNVTSPGGTT---IAALRVLEEGGF 246 (267)
T ss_pred ---HHHHHHHHHHHHHHHHHHHCCCCHHHH--HHHCCCCCHHH---HHHHHHHHHCCH
T ss_conf ---999999999999999998729999999--98367996539---999999998884
No 107
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.30 E-value=0.31 Score=27.52 Aligned_cols=105 Identities=16% Similarity=0.264 Sum_probs=63.2
Q ss_pred HCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCCC---CCCHHHHCCCCCEEEECC
Q ss_conf 41178742542567899999981988575899955960307873326678897745088---988888605883786257
Q gi|254780137|r 202 DIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKSG---PKPLSETMNNADVFLGLS 278 (779)
Q Consensus 202 ~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~~---~~~l~ea~~~adv~iG~S 278 (779)
.-||.+.|||.-|..+|-.+...+... .+.++|.+==...+..-++++. ..+...+. .++. +.++++|+.+=+.
T Consensus 3 r~Kv~IIGaG~VG~~~A~~l~~~~l~~-el~L~Di~~~~a~g~a~Dl~h~-~~~~~~~~v~~~~d~-~~~~~aDvVVitA 79 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLAD-ELVLVDVVEDKLKGEAMDLQHG-SAFLKNPKIEADKDY-SVTANSKVVIVTA 79 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCC-EEEEEECCCCCCHHHHHHHHHC-CCCCCCCEEEECCCH-HHHCCCCEEEECC
T ss_conf 886999897888999999999669988-7999938898332688886604-012798559937999-9968999999889
Q ss_pred C----CCCCCH------------HHHHH---CCCCCEEEEECCCCCCCCHH
Q ss_conf 8----877898------------89972---18997799917872009988
Q gi|254780137|r 279 V----AGALDP------------AILKF---MAEKPLIMVLANPNPEAMPD 310 (779)
Q Consensus 279 ~----~g~~t~------------e~v~~---M~~~PiIfaLsNP~pEi~p~ 310 (779)
+ +| -|+ ++.+. .+++.+|.-.|||.--+++-
T Consensus 80 G~~~k~g-~~R~dLl~~N~~I~~~i~~~i~~~~p~~ivivvsNPvDv~t~~ 129 (312)
T cd05293 80 GARQNEG-ESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVDIMTYV 129 (312)
T ss_pred CCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHH
T ss_conf 9999989-8889999988999999999988419984699668918999999
No 108
>pfam02882 THF_DHG_CYH_C Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain.
Probab=94.13 E-value=0.46 Score=26.33 Aligned_cols=91 Identities=16% Similarity=0.227 Sum_probs=70.4
Q ss_pred CHHHHHHHHHHHHHHHHCCCHHHCEEEEECCCH-HHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHC
Q ss_conf 189999999999999709882241178742542-5678999999819885758999559603078733266788977450
Q gi|254780137|r 180 GTAVTVTAATLNGMKLVGKKFSDIKIVTLGAGA-AALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQK 258 (779)
Q Consensus 180 GTa~v~lA~llnAl~~~gk~l~~~~iv~~GaGa-Ag~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~ 258 (779)
+-.-.+..|.+--|+-.+.+++..++|+.|.+. -|.-.+.||...+. .+.+|+++ +
T Consensus 14 ~~~PcTp~ai~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~a---tVtichs~-------T------------- 70 (159)
T pfam02882 14 GFVPCTPRGIMELLKRYGIDLAGKNVVVIGRSNIVGKPLALLLLNANA---TVTVCHSK-------T------------- 70 (159)
T ss_pred CCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEECCC-------C-------------
T ss_conf 996964999999999839985786699988873148999999987799---89998189-------9-------------
Q ss_pred CCCCCHHHHCCCCCEEEECCC-CCCCCHHHHHHCCCCCEEEE
Q ss_conf 889888886058837862578-87789889972189977999
Q gi|254780137|r 259 SGPKPLSETMNNADVFLGLSV-AGALDPAILKFMAEKPLIMV 299 (779)
Q Consensus 259 ~~~~~l~ea~~~adv~iG~S~-~g~~t~e~v~~M~~~PiIfa 299 (779)
..|.+.++.||++|-..+ ++.++.+|++ +..+|.-
T Consensus 71 ---~nl~~~~~~ADIvI~A~G~p~~i~~~~ik---~gavvID 106 (159)
T pfam02882 71 ---KDLAEITREADIVVVAVGKPGLIKADWVK---PGAVVID 106 (159)
T ss_pred ---CCHHHHHHCCCEEEEECCCCCCCCHHHCC---CCCEEEE
T ss_conf ---99789630034442315885505698858---9988998
No 109
>pfam01210 NAD_Gly3P_dh_N NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus. NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain.
Probab=94.02 E-value=0.35 Score=27.20 Aligned_cols=85 Identities=19% Similarity=0.239 Sum_probs=44.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCC-CCCCCHHHH---HHHHC-CCCCCHHHHCCCCCEEE-E
Q ss_conf 117874254256789999998198857589995596030787-332667889---77450-88988888605883786-2
Q gi|254780137|r 203 IKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGR-EKKFDKWKS---VYAQK-SGPKPLSETMNNADVFL-G 276 (779)
Q Consensus 203 ~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r-~~~~~~~~~---~~a~~-~~~~~l~ea~~~adv~i-G 276 (779)
.||.+.|||+=|++++..+..-|- ++.+.+++--..+.- ....++... .+... .-..++.++++++|+++ .
T Consensus 1 kKI~IiGaG~wGtAla~~la~n~~---~V~l~~r~~~~~~~i~~~~~n~~~lp~~~l~~~i~~~~dl~~a~~~adiIiia 77 (159)
T pfam01210 1 KKIAVLGAGSWGTALAKVLARNGH---EVRLWGRDEELIEEINTTRENVKYLPGIKLPDNLRATTDLEEAIKGADIIVLA 77 (159)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC---EEEEEEECCHHHHHHHHCCCCCHHCCCCCCCCCEEECCCHHHHHHCCCEEEEE
T ss_conf 989999969999999999998799---89999904366677886697821047864555305428899998379899991
Q ss_pred CCCCCCCCHHHHHHCC
Q ss_conf 5788778988997218
Q gi|254780137|r 277 LSVAGALDPAILKFMA 292 (779)
Q Consensus 277 ~S~~g~~t~e~v~~M~ 292 (779)
+. -.+.+++++.+.
T Consensus 78 vp--s~~~~~~~~~i~ 91 (159)
T pfam01210 78 VP--SQALREVLKQLK 91 (159)
T ss_pred CC--HHHHHHHHHHHH
T ss_conf 74--889999999998
No 110
>PRK06141 ornithine cyclodeaminase; Validated
Probab=93.90 E-value=0.42 Score=26.62 Aligned_cols=111 Identities=12% Similarity=0.156 Sum_probs=71.2
Q ss_pred HHHHHCCCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCC----CCCCHHHH
Q ss_conf 99970988224117874254256789999998198857589995596030787332667889774508----89888886
Q gi|254780137|r 192 GMKLVGKKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKS----GPKPLSET 267 (779)
Q Consensus 192 Al~~~gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~----~~~~l~ea 267 (779)
|.|..-++ ...++.++|+|.=+-...+.+.... .-++|++.++. .+..+.+..++.... -..+.+++
T Consensus 116 aa~~LA~~-~~~~l~iiG~G~QA~~~l~a~~~v~-~i~~v~v~~r~-------~~~a~~~~~~~~~~~~~~~~~~~~~~a 186 (313)
T PRK06141 116 AASYLARK-DARRLLVVGTGRLASLLALAHASVR-PIKQVRVWGRN-------PAKAAALAAELREQGFDAEVVTDLEAA 186 (313)
T ss_pred HHHHHCCC-CCCEEEEECCHHHHHHHHHHHHHHC-CCCEEEEECCC-------HHHHHHHHHHHHHCCCCEEEECCHHHH
T ss_conf 78763578-9767999778899999999999728-97589999389-------899999999998509975995899998
Q ss_pred CCCCCEEEECCC--CCCCCHHHHHHCCCCCEEEEECCCCC---CCCHHHHHH
Q ss_conf 058837862578--87789889972189977999178720---099889985
Q gi|254780137|r 268 MNNADVFLGLSV--AGALDPAILKFMAEKPLIMVLANPNP---EAMPDEIKK 314 (779)
Q Consensus 268 ~~~adv~iG~S~--~g~~t~e~v~~M~~~PiIfaLsNP~p---Ei~p~~a~~ 314 (779)
+.++||.+.++. .-+|..+|++ +...|-+....+| |++++....
T Consensus 187 v~~aDII~taT~s~~Pv~~~~~l~---~G~hI~avGs~~p~~~El~~~~~~~ 235 (313)
T PRK06141 187 VRQADIISCATLSTEPLVRGEWLR---PGTHLDLVGSFTPDMRECDDAAIAR 235 (313)
T ss_pred HHHCCEEEECCCCCCCCCCCCCCC---CCCEEEEECCCCCCCEECCHHHHCC
T ss_conf 610877997168898644644467---8726976358998755459778607
No 111
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.87 E-value=0.4 Score=26.81 Aligned_cols=86 Identities=14% Similarity=0.146 Sum_probs=51.5
Q ss_pred HCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCCCCCCHHHHCCCCCEEEECCCCC
Q ss_conf 41178742542567899999981988575899955960307873326678897745088988888605883786257887
Q gi|254780137|r 202 DIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKSGPKPLSETMNNADVFLGLSVAG 281 (779)
Q Consensus 202 ~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~~~~~l~ea~~~adv~iG~S~~g 281 (779)
-.||+++|.|-.|.+++++|.+.|. +++.+|.+ ...+.+....-........-.+-+.+.|+++-.++=.
T Consensus 12 Gk~V~V~GlG~sG~a~a~~L~~~G~---~v~~~D~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SPGI~ 81 (487)
T PRK03369 12 GAPVLVAGAGVTGRAVLAALTRFGA---RPTVCDDD-------PDALRPHAERGVATVSSSDAVQQIADYALVVTSPGFP 81 (487)
T ss_pred CCEEEEEEECHHHHHHHHHHHHCCC---EEEEEECC-------CHHHHHHHHCCCCEECCCCCHHHHCCCCEEEECCCCC
T ss_conf 8989999156838999999997869---79999898-------2577999865994863762265646778899899579
Q ss_pred CCCHHHHHHCCCC-CEE
Q ss_conf 7898899721899-779
Q gi|254780137|r 282 ALDPAILKFMAEK-PLI 297 (779)
Q Consensus 282 ~~t~e~v~~M~~~-PiI 297 (779)
.-.+++.+....+ ||+
T Consensus 82 ~~~p~l~~a~~~gi~i~ 98 (487)
T PRK03369 82 PTAPVLAAAAAAGVPIW 98 (487)
T ss_pred CCCHHHHHHHHCCCCEE
T ss_conf 98999999998899076
No 112
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.86 E-value=0.52 Score=26.00 Aligned_cols=94 Identities=18% Similarity=0.216 Sum_probs=54.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEEC-CCC------------CCCCHHH--HHHHHCCCCCCHHHH
Q ss_conf 1178742542567899999981988575899955960307-873------------3266788--977450889888886
Q gi|254780137|r 203 IKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYE-GRE------------KKFDKWK--SVYAQKSGPKPLSET 267 (779)
Q Consensus 203 ~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~-~r~------------~~~~~~~--~~~a~~~~~~~l~ea 267 (779)
.||.+.|||.=|.+||-++...|. +++++|..--..+ .+. ..+++.. ...++-+-..++.++
T Consensus 3 kkV~ViGaG~MG~~IA~~~a~~G~---~V~l~D~~~e~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~dl~~a 79 (289)
T PRK09260 3 EKIVVVGAGVMGRGIAYVFASSGF---QTTLVDISQEQLASAQQEIESILEDGVALGKVTEAAAQAALARLSYSLDLKEA 79 (289)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC---CEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHH
T ss_conf 769997968878999999996899---88999799899999999999999999871799989999999558766888998
Q ss_pred CCCCCEEEECCC-CCCCCHHHHHHC---CCCCEEEE
Q ss_conf 058837862578-877898899721---89977999
Q gi|254780137|r 268 MNNADVFLGLSV-AGALDPAILKFM---AEKPLIMV 299 (779)
Q Consensus 268 ~~~adv~iG~S~-~g~~t~e~v~~M---~~~PiIfa 299 (779)
++++|+.|=.-. ---.++++.+.. ++.-.||+
T Consensus 80 ~~~aDlViEav~E~l~iK~~v~~~l~~~~~~~~Ila 115 (289)
T PRK09260 80 VAGADLLIEAVPEKLEIKQAVFETADAHAPAEALIA 115 (289)
T ss_pred HCCCCEEEECCCCCHHHCHHHHHHHHHCCCCCCEEE
T ss_conf 476999998886863236899999860689980898
No 113
>PRK09117 consensus
Probab=93.80 E-value=0.53 Score=25.92 Aligned_cols=93 Identities=18% Similarity=0.283 Sum_probs=50.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCE-EECCCC------------CCCCH--HHHHHHHCCCCCCHHHH
Q ss_conf 1178742542567899999981988575899955960-307873------------32667--88977450889888886
Q gi|254780137|r 203 IKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGL-VYEGRE------------KKFDK--WKSVYAQKSGPKPLSET 267 (779)
Q Consensus 203 ~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gl-i~~~r~------------~~~~~--~~~~~a~~~~~~~l~ea 267 (779)
.||.+.|||.-|.+||-++...|. +++++|..-- +-+.+. ..+.+ .....++-+...++ ++
T Consensus 3 ~~VaViGaG~mG~~iA~~~a~~G~---~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~d~-~a 78 (282)
T PRK09117 3 QTVGIIGAGTMGNGIAQACAVAGL---DVVMVDISDAAVQRGLATVAGSLDRLIKKEKLTEADKAAALARIKGSTDY-DA 78 (282)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC---CEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCH-HH
T ss_conf 779998977999999999996799---68999898899999999999999999970688778899998406567998-99
Q ss_pred CCCCCEEEECCCC-CCCCHHHHHHC---CCCCEEEE
Q ss_conf 0588378625788-77898899721---89977999
Q gi|254780137|r 268 MNNADVFLGLSVA-GALDPAILKFM---AEKPLIMV 299 (779)
Q Consensus 268 ~~~adv~iG~S~~-g~~t~e~v~~M---~~~PiIfa 299 (779)
++++|+.|=+-.- -..+.++.+.. ++.-.||+
T Consensus 79 ~~~aDlViEav~E~l~iK~~lf~~l~~~~~~~~Ila 114 (282)
T PRK09117 79 LKDADLVIEAATENLDLKLKILKQLDALVGPDAIIA 114 (282)
T ss_pred HCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 755999998785888888999999986579981898
No 114
>PRK06487 glycerate dehydrogenase; Provisional
Probab=93.79 E-value=0.53 Score=25.91 Aligned_cols=182 Identities=15% Similarity=0.140 Sum_probs=106.3
Q ss_pred HHHHHHHHCCCCCCCCCCCH---HHHHHHHHHHHHHHH------------------------CCCHHHCEEEEECCCHHH
Q ss_conf 99999871894216877218---999999999999970------------------------988224117874254256
Q gi|254780137|r 162 ERILSQKLKIPFLHDDQHGT---AVTVTAATLNGMKLV------------------------GKKFSDIKIVTLGAGAAA 214 (779)
Q Consensus 162 ~~~l~~~~~ipvf~DD~qGT---a~v~lA~llnAl~~~------------------------gk~l~~~~iv~~GaGaAg 214 (779)
++.+++ .+|+|.|---.+| |=-+++-+|+.+|-. ...|...++-+.|.|.=|
T Consensus 82 ~~aa~~-~gI~V~n~pg~~~~~VAE~~l~liL~l~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~eL~gktvGIiG~G~IG 160 (317)
T PRK06487 82 LAAARE-RGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELG 160 (317)
T ss_pred HHHHHH-CCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCCEEEEECCCHHH
T ss_conf 999997-8998997898683799999999999998545899999982843336555534776543059789997867689
Q ss_pred HHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCCCCCCHHHHCCCCCEEEE-C--C--CCCCCCHHHHH
Q ss_conf 78999999819885758999559603078733266788977450889888886058837862-5--7--88778988997
Q gi|254780137|r 215 LACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKSGPKPLSETMNNADVFLG-L--S--VAGALDPAILK 289 (779)
Q Consensus 215 ~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~~~~~l~ea~~~adv~iG-~--S--~~g~~t~e~v~ 289 (779)
-.+++++..+|+ +++..|+.+ ++.. .+..+|.|.+..+|++.- + + ..+.+.++.++
T Consensus 161 ~~va~~~~~fg~---~V~~~~~~~-----~~~~-----------~~~~~l~ell~~sDivslh~Plt~~T~~li~~~~l~ 221 (317)
T PRK06487 161 GAVARLAEAFGM---RVLIGQLPG-----RPAR-----------PDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELA 221 (317)
T ss_pred HHHHHHHHHCCC---EEEEEECCC-----CCCC-----------CCCCCHHHHHHHCCEEEEECCCCCCCHHHHHHHHHH
T ss_conf 999999974899---999992888-----8642-----------450579999873885687335761121157999998
Q ss_pred HCCCCCEEEEECCCCCCCCHHHH-HHHCCCEEECCC------CC---CCC---CCCCHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf 21899779991787200998899-851898798058------87---887---743503455665456751373002678
Q gi|254780137|r 290 FMAEKPLIMVLANPNPEAMPDEI-KKVRPDAMICTG------RS---DFS---NQVNNVLCFPYIFRGALDCGATAITEE 356 (779)
Q Consensus 290 ~M~~~PiIfaLsNP~pEi~p~~a-~~~~g~aivatG------rs---~~p---nQ~NN~l~FPgif~Gal~~~A~~Itd~ 356 (779)
.|.+.+++-=.|--. =+..+.. .+-....|-+-| -| +.| ....|+++-|-|+-.... -.+.
T Consensus 222 ~Mk~~a~lIN~aRG~-lVde~aL~~AL~~g~i~gAalDV~~~EP~~~~~pl~~~~~pNvilTPHia~~t~e-----a~~~ 295 (317)
T PRK06487 222 LMKPGALLINTARGG-LVDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPHSAWGSRE-----ARQR 295 (317)
T ss_pred HCCCCCEEEEECCCC-CCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHCCCCCEEECCCCCCCHHH-----HHHH
T ss_conf 538997899706865-4699999999984994189995899989999993453799989986853506099-----9999
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999872
Q gi|254780137|r 357 MKVAAARAMAVLV 369 (779)
Q Consensus 357 M~~aAa~alA~la 369 (779)
|..-+++-|....
T Consensus 296 ~~~~~~~ni~~fl 308 (317)
T PRK06487 296 IVGQLAENARAFF 308 (317)
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999998
No 115
>TIGR00507 aroE shikimate 5-dehydrogenase; InterPro: IPR011342 The shikimate pathway links the metabolism of carbohydrates to the biosynthesis of aromatic compounds and is essential for the biosynthesis of aromatic amino acids and other aromatic compounds in bacteria, eukaryotic microorganisms and plants . It is a seven-step pathway which converts phosphoenolpyruvate and erythrose 4-phosphate to chorismate, the common precursor for the synthesis of folic acid, ubiquinone, vitamins E and K, and aromatic amino acids. Since this pathway is absent in metazoans, which must therefore obtain the essential amino acids phenylalanine and tryptophan from their diet, the enzymes in this pathway are important targets for the development of novel herbicides and antimicrobial compounds. This entry represents shikimate 5-dehydrogenases from prokaryotes and functionally equivalent C-terminal domains from larger, multifunctional proteins, the majority of which have an N-terminal quinate dehydrogenase domain. These multifunctional proteins occur in plants, chlamydiae, planctomycetes and a limited number of marine proteobacteria. Shikimate 5-dehydrogenase catalyses the fourth step of the shikimate pathway, which is the NADP-dependent reduction of 3-dehydroshikimate to shikimate . Structural studies suggests that some shikimate dehydrogenases are monmers while others form homodimers , . Each shikimate dehydrogenase monomer forms a compact two-domain alpha/beta sandwich with a deep interdomain cleft. The N-terminal substrate-binding domain forms a three layer alpha-beta-alpha sandwich, while the C-terminal NADP-binding domain forms a nearly typical Rossman fold. The active site is thought to be located within the interdomain cleft, with substrate binding causing a conformational change which closes the active site cleft, forming a productive active site.; GO: 0004764 shikimate 5-dehydrogenase activity, 0050661 NADP binding.
Probab=93.65 E-value=0.14 Score=29.85 Aligned_cols=107 Identities=17% Similarity=0.252 Sum_probs=65.2
Q ss_pred HHHHHHHHHCCCHH-HCEEEEECCCHHHHHHHHHHHHC-CCCCCCEEEEECCCEEECCCCCCCCHHHHH-HHHCCCC---
Q ss_conf 99999997098822-41178742542567899999981-988575899955960307873326678897-7450889---
Q gi|254780137|r 188 ATLNGMKLVGKKFS-DIKIVTLGAGAAALACLNLLVTM-GVRRENIWVYDLEGLVYEGREKKFDKWKSV-YAQKSGP--- 261 (779)
Q Consensus 188 ~llnAl~~~gk~l~-~~~iv~~GaGaAg~~~a~ll~~~-g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~-~a~~~~~--- 261 (779)
|+..+|+-.=.++. ++++++.|||-|+=|++--|.++ +. +|.+++| |..|.+.+-+.-+. ...+...
T Consensus 106 G~~~~L~~~l~~l~~~~~~li~GAGGAa~a~a~~L~~~t~~---~~~i~NR----T~~ka~~La~~~~~kln~~~G~~~~ 178 (286)
T TIGR00507 106 GLVSSLEQELSKLKPNQRVLIIGAGGAAKAVALELLKATDC---NVIIANR----TVEKAEELAERFQRKLNKKYGEIQA 178 (286)
T ss_pred HHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCC---EEEEEEC----CHHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf 57888888740368997799994286789999999860099---7899828----7789999999989885342485365
Q ss_pred CCHHHH-CCC--CCEEEECCCC----CCCCHHHHHHCCCCC-EEEEEC
Q ss_conf 888886-058--8378625788----778988997218997-799917
Q gi|254780137|r 262 KPLSET-MNN--ADVFLGLSVA----GALDPAILKFMAEKP-LIMVLA 301 (779)
Q Consensus 262 ~~l~ea-~~~--adv~iG~S~~----g~~t~e~v~~M~~~P-iIfaLs 301 (779)
-++.|+ .+. -|+.|-++.. +.=..++-.+|.+.+ .++=|.
T Consensus 179 ~~~~~~~l~~G~~DlIINATs~G~~~~~~~~~v~~~~~~~~~~v~D~~ 226 (286)
T TIGR00507 179 FSLDEVPLHKGKVDLIINATSAGMSGNIDEPPVPAELLKEGKLVYDLV 226 (286)
T ss_pred EECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHCCCCCEEEECC
T ss_conf 211335555785679985467788889887456853416886899514
No 116
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=93.56 E-value=0.26 Score=28.02 Aligned_cols=100 Identities=17% Similarity=0.219 Sum_probs=52.6
Q ss_pred CCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECC--C-----CCCCCHHHHHHHHC----CC------
Q ss_conf 8822411787425425678999999819885758999559603078--7-----33266788977450----88------
Q gi|254780137|r 198 KKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEG--R-----EKKFDKWKSVYAQK----SG------ 260 (779)
Q Consensus 198 k~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~--r-----~~~~~~~~~~~a~~----~~------ 260 (779)
++|.+.||++.|+|.-|.-++..|..+|+. ++.++|.+-+=..+ | .+.....|..-|.. .|
T Consensus 134 ~kL~~a~VlivG~GGLGs~~a~yLA~aGVG--~i~lvD~D~Ve~SNL~RQil~~~~diG~~Ka~~a~~~L~~~Np~i~i~ 211 (379)
T PRK08762 134 RRLARARVLLIGAGGLGSPAAFYLAAAGVG--HLRIADHDVVDRSNLQRQILHTEDSVGQPKVDSAAQRIAALNPRVQVE 211 (379)
T ss_pred HHHHHCCEEEECCCHHHHHHHHHHHHHCCC--EEEEEECCCCCCCCHHHCCCCCHHHCCCHHHHHHHHHHHHHCCCCCEE
T ss_conf 999739789988875579999999983797--589762886133450112574643355558999999999868997338
Q ss_pred -------CCCHHHHCCCCCEEEECCCCCCCCHHHHHHCC---CCCEEEEE
Q ss_conf -------98888860588378625788778988997218---99779991
Q gi|254780137|r 261 -------PKPLSETMNNADVFLGLSVAGALDPAILKFMA---EKPLIMVL 300 (779)
Q Consensus 261 -------~~~l~ea~~~adv~iG~S~~g~~t~e~v~~M~---~~PiIfaL 300 (779)
..++.+.+++.|+.+-++- +.-|+-++-..| ..|.|++=
T Consensus 212 ~~~~~l~~~n~~~li~~~DlViDctD-N~~tR~liN~~c~~~~~PlV~ga 260 (379)
T PRK08762 212 AVQTRVTSSNVEALLQDVDVVVDGAD-NFPARYLLNDACVKLGKPLVYGA 260 (379)
T ss_pred EEHHCCCHHHHHHHHHHCCEEEECCC-CHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 50210898999999862889998688-77889999999999799979998
No 117
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=93.55 E-value=0.31 Score=27.59 Aligned_cols=41 Identities=20% Similarity=0.370 Sum_probs=36.0
Q ss_pred CCCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCE
Q ss_conf 9882241178742542567899999981988575899955960
Q gi|254780137|r 197 GKKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGL 239 (779)
Q Consensus 197 gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gl 239 (779)
-++|.+.||++.|+|.-|..++..|..+|+. ++.++|.+=+
T Consensus 16 Q~~L~~s~VlivG~GGlGs~~~~~La~~Gvg--~i~lvD~D~v 56 (228)
T cd00757 16 QEKLKNARVLVVGAGGLGSPAAEYLAAAGVG--KLGLVDDDVV 56 (228)
T ss_pred HHHHHCCCEEEECCCHHHHHHHHHHHHCCCC--EEEEEECCCC
T ss_conf 9998649789988778899999999983997--5899978745
No 118
>TIGR00557 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; InterPro: IPR005255 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). PLP is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination , , . PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors . Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy . PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalyzed reactions, enzymatic and non-enzymatic . In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised , , . This entry represents 4-hydroxythreonine-4-phosphate dehydrogenase (PdxA, 1.1.1.262 from EC). PdxA takes part in vitamin B6 biosynthesis, forming pyridoxine 5'-phosphate from 4-(phosphohydroxy)-L-threonine and 1-deoxy-D-xylulose-5-phosphate.; GO: 0050570 4-hydroxythreonine-4-phosphate dehydrogenase activity, 0051287 NAD binding, 0008615 pyridoxine biosynthetic process.
Probab=93.48 E-value=0.6 Score=25.57 Aligned_cols=270 Identities=12% Similarity=0.138 Sum_probs=161.1
Q ss_pred CEEEEECCCC-----CHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHH
Q ss_conf 4699824774-----04679999998527508999559899999999849876654684230620255678999999998
Q gi|254780137|r 458 KRILFSAGED-----ERVLRATQILIKENIARPVLIGSLLTIQDNIRRHDLQIIATKDFDVIDLNNKQSLKDYVDSYRSL 532 (779)
Q Consensus 458 KRIVfaEgeD-----~rVLrAA~~~~eeGia~PILVG~~e~I~~~~~~~gL~l~~~~dieIidp~~~~~~~~ya~~l~~~ 532 (779)
|||+...||= +-||+-++.+.+. ++++..|+.+-..+..+=+|+.+. .+.++-+++.......-|.....-+
T Consensus 2 kki~It~GdpaGiGpeLilk~~k~~~~~--~e~v~~~d~~lL~~a~~llg~~l~-~k~~~~~~~A~~~tag~~~~~p~~L 78 (325)
T TIGR00557 2 KKIAITLGDPAGIGPELILKLAKRVEEK--VELVVLADEKLLEEAAKLLGLKLE-LKKLEKVEEAKERTAGVLLLAPVAL 78 (325)
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHC--CCEEEECCHHHHHHHHHHHCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 5478616875561688999987775103--315886567899999986177210-3215877531045677787643443
Q ss_pred HHH--CC-CCHHHHHHHHHHCHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHCCC------CCCCCCEEEEECCC
Q ss_conf 763--79-9989999998625356789998657210010044677740467777763068------76685012100135
Q gi|254780137|r 533 SAE--KG-ISLDSIYDLLRSNTTLLGSLALKRGEGDGMICMCDSESGYNSHLTDIHKIIG------MGLGISHYSAMSMC 603 (779)
Q Consensus 533 ~~R--KG-~~~~~A~~~vr~d~~~faa~MV~~G~AD~lI~G~~~t~~y~~~lr~~~~vIG------~~~g~~~vs~~~il 603 (779)
+.- .| ++.+.=...+. ..--|+-..-+|+.|+++++=++.... -..-.+-.| .+-+.+.+ ++||
T Consensus 79 ~~pvt~g~vs~~sG~y~ve--~larAc~~a~~ge~~gi~T~PinK~~~---~~Agipf~GhTeFl~~rs~~k~~--~MMl 151 (325)
T TIGR00557 79 KAPVTAGKVSVESGKYAVE--SLARACEDALSGEVDGILTLPINKLVI---KKAGIPFVGHTEFLKKRSKAKKV--VMML 151 (325)
T ss_pred HCCCCCCCHHHHCCHHHHH--HHHHHHHHHHCCCCCEEEECCHHHHHH---HCCCCCCCCCHHHHHHHHCCCCE--EEEE
T ss_conf 0544466100101268999--999998764125711565065115788---60689744350899985248627--8761
Q ss_pred CCCC-CEEEEECC----CCCCCCCHHHHHHHHHHHHHHHH-HCCC-CCCEEEEEEC----CCCCCCCCCHHHHHHHHHHH
Q ss_conf 5777-34999747----36889898899999999999999-8189-9729999702----55788897789999999999
Q gi|254780137|r 604 IVRD-NFLFFTDT----HVSAEPSAMEIADSTILASQAIC-SLGM-RPKVSVLFHS----NSGSHCIKSSLKMRDSFEKI 672 (779)
Q Consensus 604 ~~~~-~~lFiaDt----aVNi~PtaEqLAdIa~~aa~~ar-~lGi-ePkVAlLS~S----nfGs~~~~s~~kvr~A~eil 672 (779)
-+.+ ++..+||= .|-..=+.+.|.+....--+-.+ +||+ ||+|-+|-+. +.|.--.|...++-.|++..
T Consensus 152 ~~ekL~V~L~ttH~PL~dv~~~i~~~~l~k~~~~~~k~~~~KfG~~EP~i~VcGlNPHAGE~G~~G~EEie~Iipa~~e~ 231 (325)
T TIGR00557 152 ASEKLKVALLTTHVPLKDVADLIKKEALLKVVLLLRKELREKFGKAEPLIKVCGLNPHAGEEGELGREEIEEIIPAVEEA 231 (325)
T ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 15420245421577756576440388999999999898886532117714773368877888998851356789999986
Q ss_pred HHHCCCCEEECCCCHHHHCCHHHHHHCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCEEECHHHCCCCCCEEECCC
Q ss_conf 87379959986730465329898963089987777777788189128889999999865986871443145898798787
Q gi|254780137|r 673 CELSKNLEVDAIVQEEVCLSEIFCDKDVPNTSSSQDAQLLVFPNIDSANIALEMAKSVTNGLHIGTLLLGAALPVHIVPS 752 (779)
Q Consensus 673 ~~~~pd~~VDGemq~D~AL~~~ia~~K~p~S~laG~ANVLIfPnLeAaNI~yKllq~lgga~aiGPIL~G~~kPV~ilsr 752 (779)
++......+-|||-.|+|+.+..++ .+|+++.=.=|-|=+-.|.+ .|+.+.. +-+.-|+.=+|.
T Consensus 232 ~qt~~g~k~~GPLpaD~aF~p~~~~----------~~d~~l~MyHD~GL~plK~l-~FdegvN-----~tLglPfiRTS~ 295 (325)
T TIGR00557 232 KQTKEGIKLVGPLPADSAFAPKKRE----------IADVYLAMYHDQGLAPLKAL-AFDEGVN-----VTLGLPFIRTSV 295 (325)
T ss_pred HHHCCCEEEECCCCCCCCCCCCCCC----------CCCEEEEEECCCCCHHHHHH-HCCCCEE-----EEECCCHHCCCC
T ss_conf 5440845643788844134787545----------78668983256660677764-3477146-----640876101378
Q ss_pred C
Q ss_conf 6
Q gi|254780137|r 753 S 753 (779)
Q Consensus 753 ~ 753 (779)
.
T Consensus 296 D 296 (325)
T TIGR00557 296 D 296 (325)
T ss_pred C
T ss_conf 6
No 119
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=93.47 E-value=0.24 Score=28.28 Aligned_cols=102 Identities=19% Similarity=0.263 Sum_probs=59.6
Q ss_pred CCCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECC--CC-----CCCCHHHHHHHHC----CC-----
Q ss_conf 98822411787425425678999999819885758999559603078--73-----3266788977450----88-----
Q gi|254780137|r 197 GKKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEG--RE-----KKFDKWKSVYAQK----SG----- 260 (779)
Q Consensus 197 gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~--r~-----~~~~~~~~~~a~~----~~----- 260 (779)
-++|.+.+|++.|+|.-|..++..|..+|+. +|.++|.+-+-..+ |. +.....|...|+. -+
T Consensus 27 Q~kL~~s~VlivG~GGlG~~~~~~La~aGvg--~i~lvD~D~ve~sNLnRQ~l~~~~diG~~Kv~~a~~~l~~inp~i~i 104 (245)
T PRK05690 27 QEKLKAARVLVVGLGGLGCAAAQYLAAAGVG--TLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESAKAALARINPHIAI 104 (245)
T ss_pred HHHHHHCCEEEECCCHHHHHHHHHHHHCCCC--EEEEEECCCCCCCCHHHHHCCCHHHCCCCHHHHHHHHHHHHCCCCCE
T ss_conf 9999719789987777789999999985996--59999688678886788864598778988799999999975887522
Q ss_pred --------CCCHHHHCCCCCEEEECCCCCCCCHHHHHHCC---CCCEEEEEC
Q ss_conf --------98888860588378625788778988997218---997799917
Q gi|254780137|r 261 --------PKPLSETMNNADVFLGLSVAGALDPAILKFMA---EKPLIMVLA 301 (779)
Q Consensus 261 --------~~~l~ea~~~adv~iG~S~~g~~t~e~v~~M~---~~PiIfaLs 301 (779)
...+.+.+++.|+.+-++- +.-+.-++-..| ..|.|++-.
T Consensus 105 ~~~~~~i~~~n~~~li~~~DlViD~~D-n~~~R~~ln~~c~~~~~P~v~g~~ 155 (245)
T PRK05690 105 ETINARLDDDELAALIAAHDLVLDCTD-NVATRNQLNAACFAAKKPLVSGAA 155 (245)
T ss_pred EEEHHCCCHHHHHHHHHCCCEEEECCC-CHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 633314488899887507888998789-999999999999971998798778
No 120
>KOG0029 consensus
Probab=93.45 E-value=0.13 Score=30.10 Aligned_cols=39 Identities=26% Similarity=0.386 Sum_probs=31.7
Q ss_pred CHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEE
Q ss_conf 822411787425425678999999819885758999559603
Q gi|254780137|r 199 KFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLV 240 (779)
Q Consensus 199 ~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli 240 (779)
..+.-+|+|.|||-||+++|++|.+.|.. +.++..++-+
T Consensus 12 ~~~~~~VIVIGAGiaGLsAArqL~~~G~~---V~VLEARdRv 50 (501)
T KOG0029 12 AGKKKKVIVIGAGLAGLSAARQLQDFGFD---VLVLEARDRV 50 (501)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCC---EEEEECCCCC
T ss_conf 67888389989857899999999975982---5999714776
No 121
>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]
Probab=93.41 E-value=0.084 Score=31.46 Aligned_cols=148 Identities=16% Similarity=0.228 Sum_probs=81.1
Q ss_pred CHHHHHHHHHHHHHHH----------HCCCHHHCEEEEECCCHHHHHHHHHHHHCCC----------CCCCEEEEECCCE
Q ss_conf 1899999999999997----------0988224117874254256789999998198----------8575899955960
Q gi|254780137|r 180 GTAVTVTAATLNGMKL----------VGKKFSDIKIVTLGAGAAALACLNLLVTMGV----------RRENIWVYDLEGL 239 (779)
Q Consensus 180 GTa~v~lA~llnAl~~----------~gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~----------~~~~i~~~D~~Gl 239 (779)
+|-++..-+++.|+.. .+-..+-.++++.|+|.+|...+-.-+..|. .+|++--.-.+++
T Consensus 132 ~aNaigy~aVi~Aa~a~~rffpm~~TAagtv~pA~vlv~G~Gvagl~aiata~~lG~iVt~rdlrm~~Keqv~s~Ga~f~ 211 (356)
T COG3288 132 QANAIGYIAVIGAALAYGRFFPMQITAAGTVSPAKVLVIGAGVAGLAAIATAVRLGAIVTARDLRMFKKEQVESLGAKFL 211 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHCCCCCC
T ss_conf 54355689999999874212531100024256304333358899999999986546387613311677653452255545
Q ss_pred EECC---CCCCCCHHHHHHHHCCCCCCHHHHCCCCCEEEECC------CCCCCCHHHHHHCCCCCEEEEECCCCC---CC
Q ss_conf 3078---73326678897745088988888605883786257------887789889972189977999178720---09
Q gi|254780137|r 240 VYEG---REKKFDKWKSVYAQKSGPKPLSETMNNADVFLGLS------VAGALDPAILKFMAEKPLIMVLANPNP---EA 307 (779)
Q Consensus 240 i~~~---r~~~~~~~~~~~a~~~~~~~l~ea~~~adv~iG~S------~~g~~t~e~v~~M~~~PiIfaLsNP~p---Ei 307 (779)
-.++ -..+-.+....|-. ....-+.+.+++.|+.|.+. .|-++|+|||.+|-+..+|--|+--+- |.
T Consensus 212 ~~~~ee~~gGYAk~ms~~~~~-~q~~~~a~~~~~~DivITTAlIPGrpAP~Lvt~~mv~sMkpGSViVDlAa~~GGNce~ 290 (356)
T COG3288 212 AVEDEESAGGYAKEMSEEFIA-KQAELVAEQAKEVDIVITTALIPGRPAPKLVTAEMVASMKPGSVIVDLAAETGGNCEL 290 (356)
T ss_pred CCCCCCCCCCCCCCCCHHHHH-HHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEHHHCCCCCCC
T ss_conf 655112578755438999999-9999999884478889981445899874352799997448996899813222898655
Q ss_pred -CHHHHHHHCCCEEECCCCCCCCC
Q ss_conf -98899851898798058878877
Q gi|254780137|r 308 -MPDEIKKVRPDAMICTGRSDFSN 330 (779)
Q Consensus 308 -~p~~a~~~~g~aivatGrs~~pn 330 (779)
.|+......|.-|+ |-++.|+
T Consensus 291 t~pg~~v~~~gV~ii--g~~nlp~ 312 (356)
T COG3288 291 TEPGKVVTKNGVKII--GYTNLPG 312 (356)
T ss_pred CCCCCEEEECCEEEE--EECCCCH
T ss_conf 669807874786999--6457611
No 122
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=93.32 E-value=0.17 Score=29.34 Aligned_cols=42 Identities=24% Similarity=0.253 Sum_probs=36.2
Q ss_pred CCCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEE
Q ss_conf 98822411787425425678999999819885758999559603
Q gi|254780137|r 197 GKKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLV 240 (779)
Q Consensus 197 gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli 240 (779)
-++|...+|++.|+|.=|..++..|..+|+. +|.++|.+-+-
T Consensus 22 QekL~~s~VlivG~GGLG~~~a~~La~aGVG--~i~lvD~D~Ve 63 (209)
T PRK08644 22 LEKLKKAKVGIAGAGGLGSNIAVALARSGVG--NLKLVDFDVVE 63 (209)
T ss_pred HHHHHCCCEEEECCCHHHHHHHHHHHHHCCC--EEEEEECCEEC
T ss_conf 9999629689988878899999999993898--18998899901
No 123
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=93.29 E-value=0.43 Score=26.55 Aligned_cols=103 Identities=18% Similarity=0.153 Sum_probs=61.1
Q ss_pred EEEECC-CHHHHHHHHHHHHCCC-CCCCEEEEECCCEEECCCCCCCCHHHHHHHHCC---CCCCHHHHCCCCCEEEECCC
Q ss_conf 787425-4256789999998198-857589995596030787332667889774508---89888886058837862578
Q gi|254780137|r 205 IVTLGA-GAAALACLNLLVTMGV-RRENIWVYDLEGLVYEGREKKFDKWKSVYAQKS---GPKPLSETMNNADVFLGLSV 279 (779)
Q Consensus 205 iv~~Ga-GaAg~~~a~ll~~~g~-~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~---~~~~l~ea~~~adv~iG~S~ 279 (779)
|++.|| |.-|..++-.|..-+. ....++++|..--..++..-++++.. .+...+ -.....++++++|+.+=+.+
T Consensus 1 V~IIGA~G~VG~~~a~~l~~~~~~~~~el~L~Di~~~~~~g~a~Dl~~~~-~~~~~~~v~~~~~~~~~~~daDvVVitag 79 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAV-EPLADIKVSITDDPYEAFKDADVVIITAG 79 (263)
T ss_pred CEEECCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHCC-CCCCCCEEEECCCHHHHHCCCCEEEEECC
T ss_conf 98987797799999999982899999889999589872087999998545-23578739974873898379989999057
Q ss_pred -CCC--CC------------HHHHHHC---CCCCEEEEECCCCCCCC
Q ss_conf -877--89------------8899721---89977999178720099
Q gi|254780137|r 280 -AGA--LD------------PAILKFM---AEKPLIMVLANPNPEAM 308 (779)
Q Consensus 280 -~g~--~t------------~e~v~~M---~~~PiIfaLsNP~pEi~ 308 (779)
|.. .| +++.+.+ +++.+|.-.+||.--.+
T Consensus 80 ~~~k~g~~R~dll~~N~~I~~~i~~~i~~~~p~a~iivvtNPvdv~t 126 (263)
T cd00650 80 VGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPVDIIT 126 (263)
T ss_pred CCCCCCCCHHHHHHCHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHH
T ss_conf 78899987656640328899999888873299836997389489999
No 124
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=93.28 E-value=0.48 Score=26.25 Aligned_cols=152 Identities=19% Similarity=0.171 Sum_probs=88.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHCEEEEECC-CHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCC
Q ss_conf 89421687721899999999999997098822411787425-42567899999981988575899955960307873326
Q gi|254780137|r 170 KIPFLHDDQHGTAVTVTAATLNGMKLVGKKFSDIKIVTLGA-GAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKF 248 (779)
Q Consensus 170 ~ipvf~DD~qGTa~v~lA~llnAl~~~gk~l~~~~iv~~Ga-GaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~ 248 (779)
.+--|-----+||-++.-.++.+..-+|.++++..+-+.|| |.-+.+|++.|-..+. .+.|+- +|..-.+|.
T Consensus 135 t~~~~ttgns~Tayaa~r~Vl~~~~~lGidlsqatvaivGa~G~Ia~~Iar~la~~~~---~~~ll~-r~aea~~rq--- 207 (351)
T COG5322 135 TFTRFTTGNSHTAYAACRQVLKHFAQLGIDLSQATVAIVGATGDIASAIARWLAPKVG---VKELLL-RDAEARNRQ--- 207 (351)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHCCCHHHCEEEEECCCCHHHHHHHHHHCCCCC---EEEEEC-CCHHHHHHH---
T ss_conf 8775356775102898889999999858687778578724785489999987634667---799863-518764146---
Q ss_pred CHHHHHHHHCCCCCCHHHHCCCCCEEEECCCCCCCCHHHHHHCCCCCEEEEECCCC-CCCCHHHHHHHCCCEEECCCCCC
Q ss_conf 67889774508898888860588378625788778988997218997799917872-00998899851898798058878
Q gi|254780137|r 249 DKWKSVYAQKSGPKPLSETMNNADVFLGLSVAGALDPAILKFMAEKPLIMVLANPN-PEAMPDEIKKVRPDAMICTGRSD 327 (779)
Q Consensus 249 ~~~~~~~a~~~~~~~l~ea~~~adv~iG~S~~g~~t~e~v~~M~~~PiIfaLsNP~-pEi~p~~a~~~~g~aivatGrs~ 327 (779)
...+-+... ++++..-++ ...-+++-+||.-|-|+ +||.|+-.+ .|..||--|++-
T Consensus 208 ---~l~~l~e~~---------~~~~i~s~d---------~~~~~e~i~v~vAs~~~g~~I~pq~lk--pg~~ivD~g~P~ 264 (351)
T COG5322 208 ---RLTLLQEEL---------GRGKIMSLD---------YALPQEDILVWVASMPKGVEIFPQHLK--PGCLIVDGGYPK 264 (351)
T ss_pred ---HHHHCCCCC---------CCCEEEECC---------CCCCCCCEEEEEEECCCCCEECHHHCC--CCEEEECCCCCC
T ss_conf ---655320156---------887164154---------104461339999616998521553336--970897487576
Q ss_pred C----CCCCCHHHHHHHHHHHHHHCCCCCCCH
Q ss_conf 8----774350345566545675137300267
Q gi|254780137|r 328 F----SNQVNNVLCFPYIFRGALDCGATAITE 355 (779)
Q Consensus 328 ~----pnQ~NN~l~FPgif~Gal~~~A~~Itd 355 (779)
. ---.|.+++.| |-|......||-
T Consensus 265 dvd~~vk~~~~V~Ii~----GGlV~~s~~it~ 292 (351)
T COG5322 265 DVDTSVKNVGGVRIIP----GGLVEHSLDITW 292 (351)
T ss_pred CCCCCCCCCCCEEEEC----CCCCCCCCCCCH
T ss_conf 6663003689759956----853157644306
No 125
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.22 E-value=0.66 Score=25.29 Aligned_cols=100 Identities=24% Similarity=0.362 Sum_probs=62.1
Q ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHH---CCCCCCHHHHCCCCCEEEECC
Q ss_conf 11787425-42567899999981988575899955960307873326678897745---088988888605883786257
Q gi|254780137|r 203 IKIVTLGA-GAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQ---KSGPKPLSETMNNADVFLGLS 278 (779)
Q Consensus 203 ~~iv~~Ga-GaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~---~~~~~~l~ea~~~adv~iG~S 278 (779)
.||.+.|| |.=|..+|-+|..-+.. ..+.++|.+. .++...+|++.. ...+ .....+..|+++++|+.+=+.
T Consensus 1 mKV~IIGA~G~VG~~~A~~l~~~~~~-~elvLiDi~~--~~g~a~DL~h~~-~~~~v~~~~~~~~~~~~l~daDiVVitA 76 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLV-SELALYDIVN--TPGVAADLSHIN-TPAKVTGYLGPEELKKALKGADVVVIPA 76 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCC-CEEEEEECCC--CHHHHHHHHCCC-CCCCEEEEECCCCHHHHHCCCCEEEECC
T ss_conf 98999999981899999999729997-7699982774--266755321656-5685125708874667747999999878
Q ss_pred C----CCCCC-------HHHHHH----C---CCCCEEEEECCCCCC
Q ss_conf 8----87789-------889972----1---899779991787200
Q gi|254780137|r 279 V----AGALD-------PAILKF----M---AEKPLIMVLANPNPE 306 (779)
Q Consensus 279 ~----~g~~t-------~e~v~~----M---~~~PiIfaLsNP~pE 306 (779)
+ ||-=- -.++++ + +++.||+--|||.--
T Consensus 77 G~~rkpG~tR~dLl~~N~~I~k~i~~~i~~~~p~aiiivvtNPvD~ 122 (310)
T cd01337 77 GVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPVNS 122 (310)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHH
T ss_conf 9889979898999874078899999999820998499997083477
No 126
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=93.18 E-value=0.67 Score=25.25 Aligned_cols=122 Identities=20% Similarity=0.192 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHCCCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCC-----
Q ss_conf 999999999970988224117874254256789999998198857589995596030787332667889774508-----
Q gi|254780137|r 185 VTAATLNGMKLVGKKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKS----- 259 (779)
Q Consensus 185 ~lA~llnAl~~~gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~----- 259 (779)
..+...++++..+.. ...+++++|+|.-|+..+.++..+|.. +++.+|.. +.+..+|+.-
T Consensus 105 ~~~t~~~~~~~~~~~-~g~~V~V~G~G~iGl~~~~~a~~~Ga~--~Vi~~d~~------------~~rl~~a~~~Ga~~~ 169 (280)
T TIGR03366 105 ATATVMAALEAAGDL-KGRRVLVVGAGMLGLTAAAAAAAAGAA--RVVAADPS------------PDRRELALSFGATAL 169 (280)
T ss_pred HHHHHHHHHHHCCCC-CCCEEEEEECCHHHHHHHHHHHHCCCC--EEEEEECC------------HHHHHHHHHCCCCEE
T ss_conf 355779999971789-999899990786899999999984998--79999199------------899999997399898
Q ss_pred -CCCCHHHHC------CCCCEEEECCCCCCCCHHHHHHCCCCCEEEEEC--CCCC--CCCHHHHHHHCCCEEEC
Q ss_conf -898888860------588378625788778988997218997799917--8720--09988998518987980
Q gi|254780137|r 260 -GPKPLSETM------NNADVFLGLSVAGALDPAILKFMAEKPLIMVLA--NPNP--EAMPDEIKKVRPDAMIC 322 (779)
Q Consensus 260 -~~~~l~ea~------~~adv~iG~S~~g~~t~e~v~~M~~~PiIfaLs--NP~p--Ei~p~~a~~~~g~aiva 322 (779)
+.....|.+ .++|+.+-+++....-++.++...++-.+.-.. -|.+ ++.|.+.. .+...|+.
T Consensus 170 i~~~~~~~~~~~~~~g~g~D~vie~~G~~~~~~~a~~~l~~gG~iv~vG~~~~~~~~~~~~~~l~-~ke~~i~G 242 (280)
T TIGR03366 170 AEPEVLAERQGGLQNGRGVDVALEFSGATAAVRACLESLDVGGTAVLAGSVFPGGPVALDPEQVV-RRWLTIRG 242 (280)
T ss_pred ECCCCHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCEECHHHHH-HCCEEEEE
T ss_conf 37757799999972788870999878988999999998604989999804689984147899998-69879999
No 127
>PTZ00117 malate dehydrogenase; Provisional
Probab=93.17 E-value=0.5 Score=26.11 Aligned_cols=103 Identities=16% Similarity=0.294 Sum_probs=63.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCCC--CCCHHHHCCCCCEEEECCC-
Q ss_conf 1178742542567899999981988575899955960307873326678897745088--9888886058837862578-
Q gi|254780137|r 203 IKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKSG--PKPLSETMNNADVFLGLSV- 279 (779)
Q Consensus 203 ~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~~--~~~l~ea~~~adv~iG~S~- 279 (779)
-||.+.|+|.=|..++-++..-++. .+.++|.+--..++..-++.+....+...+. ...-.+.++++||.+=+.+
T Consensus 2 ~KV~IIGaG~VG~~~A~~l~~~~~~--eivLiDi~~~~a~g~a~Dl~h~~~~~~~~~~i~~~~dy~~~~daDiVVitAG~ 79 (313)
T PTZ00117 2 KKISIIGSGQIGAIVGLLLLQENLG--DVYLYDVIEGVPQGKALDLKHFSTIIGVNANILGTNNYEDIKDSDVIVITAGV 79 (313)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCC--EEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHCCCCEEEECCCC
T ss_conf 7899989798999999999708998--79999588983088998877242036898579837999996899999989899
Q ss_pred ---CCCCCH------------HHHHHC---CCCCEEEEECCCCCCCC
Q ss_conf ---877898------------899721---89977999178720099
Q gi|254780137|r 280 ---AGALDP------------AILKFM---AEKPLIMVLANPNPEAM 308 (779)
Q Consensus 280 ---~g~~t~------------e~v~~M---~~~PiIfaLsNP~pEi~ 308 (779)
+|- |+ +++..+ +++.|+.-.|||.--++
T Consensus 80 ~rk~g~-tR~dLl~~N~~I~~~i~~~i~~~~p~aiiivvtNPvDimt 125 (313)
T PTZ00117 80 QRKEGM-TREDLIGVNGKIMKSVAESVKKHCPNAFVICVSNPLDIMV 125 (313)
T ss_pred CCCCCC-CHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHH
T ss_conf 899799-8899998767778888877623589808997899489999
No 128
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=93.17 E-value=0.41 Score=26.68 Aligned_cols=34 Identities=18% Similarity=0.370 Sum_probs=22.1
Q ss_pred HHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEEC
Q ss_conf 241178742542567899999981988575899955
Q gi|254780137|r 201 SDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDL 236 (779)
Q Consensus 201 ~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~ 236 (779)
...++++.|||.-|+..+.+...+|.. +++.+|+
T Consensus 163 ~g~~VlV~GaG~vGl~~~~~ak~~Ga~--~Vi~~d~ 196 (341)
T PRK05396 163 VGEDVLITGAGPIGIMAAAVAKHVGAR--HVVITDV 196 (341)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCE--EEEEEEC
T ss_conf 888699989975432999999984992--8999948
No 129
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=93.06 E-value=0.53 Score=25.94 Aligned_cols=112 Identities=17% Similarity=0.205 Sum_probs=65.2
Q ss_pred HHCEEEEECCCHHHHH---HHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCCC-------CCCHHHHCCC
Q ss_conf 2411787425425678---99999981988575899955960307873326678897745088-------9888886058
Q gi|254780137|r 201 SDIKIVTLGAGAAALA---CLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKSG-------PKPLSETMNN 270 (779)
Q Consensus 201 ~~~~iv~~GaGaAg~~---~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~~-------~~~l~ea~~~ 270 (779)
...||+|.|+||.... ..++...-......+|++|- ..+|.+..-..-+.+.+..+ ..++.+|+++
T Consensus 2 ~~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~ei~L~Di----d~~r~~~i~~~~~~~v~~~g~~~kv~~ttd~~eAl~g 77 (442)
T COG1486 2 KKFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDI----DEERLKIIAILAKKLVEEAGAPVKVEATTDRREALEG 77 (442)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCEEEEEEC----CHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHCC
T ss_conf 973699989975314799998984175577666999838----7788999999999999963998589994589998447
Q ss_pred CCEEEECCC---------------------------CCCCC-----------HHHHHHCCCCCEEEEECCCCCCCCHHHH
Q ss_conf 837862578---------------------------87789-----------8899721899779991787200998899
Q gi|254780137|r 271 ADVFLGLSV---------------------------AGALD-----------PAILKFMAEKPLIMVLANPNPEAMPDEI 312 (779)
Q Consensus 271 adv~iG~S~---------------------------~g~~t-----------~e~v~~M~~~PiIfaLsNP~pEi~p~~a 312 (779)
||..+-.-. +|.|. -+.++.+|++.-++--+||-..++....
T Consensus 78 AdfVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~~~P~Aw~lNytNPa~~vTeAv~ 157 (442)
T COG1486 78 ADFVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEKVCPNAWMLNYTNPAAIVTEAVR 157 (442)
T ss_pred CCEEEEEEEECCCCCCHHHHCCCHHHCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHH
T ss_conf 98899987506843002231132641704544647207876302441999999999986977478743686999999999
Q ss_pred HHHC
Q ss_conf 8518
Q gi|254780137|r 313 KKVR 316 (779)
Q Consensus 313 ~~~~ 316 (779)
+++.
T Consensus 158 r~~~ 161 (442)
T COG1486 158 RLYP 161 (442)
T ss_pred HHCC
T ss_conf 8578
No 130
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p; InterPro: IPR006285 This is a family of eukaryotic proteins found in animals, plants, and yeasts that includes Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy. .
Probab=93.00 E-value=0.1 Score=30.93 Aligned_cols=109 Identities=18% Similarity=0.348 Sum_probs=60.4
Q ss_pred HHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECC--CCCCCCHHHHHHHHCCC---CCCHHHHCC-----
Q ss_conf 22411787425425678999999819885758999559603078--73326678897745088---988888605-----
Q gi|254780137|r 200 FSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEG--REKKFDKWKSVYAQKSG---PKPLSETMN----- 269 (779)
Q Consensus 200 l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~--r~~~~~~~~~~~a~~~~---~~~l~ea~~----- 269 (779)
+++.|+++.|||+=|+-|++.|+-.|++ ||.++|---+-+.. |.. |-.+. -+.... ..+-..+++
T Consensus 346 ~s~~KvLlLGAGTLGc~vaR~L~GwGvR--hItFvDngkVs~sNPVRQs-L~nFe--Dcl~gG~~KAetA~kalk~IFP~ 420 (689)
T TIGR01381 346 LSSVKVLLLGAGTLGCQVARVLLGWGVR--HITFVDNGKVSYSNPVRQS-LYNFE--DCLEGGEGKAETAAKALKRIFPA 420 (689)
T ss_pred HHHCCEEEECCCHHHHHHHHHHHCCCCE--EEEEEECCEEEECCCCCCC-CCCHH--HHHCCCCHHHHHHHHHHHHHCHH
T ss_conf 6312312342633456898887426621--5788645745402774687-64336--45137862389999999862500
Q ss_pred --CCCEEEECCCC-CCCCHHHHHHC-----------CCCCEEEEECCCC-CCCCHHHHH
Q ss_conf --88378625788-77898899721-----------8997799917872-009988998
Q gi|254780137|r 270 --NADVFLGLSVA-GALDPAILKFM-----------AEKPLIMVLANPN-PEAMPDEIK 313 (779)
Q Consensus 270 --~adv~iG~S~~-g~~t~e~v~~M-----------~~~PiIfaLsNP~-pEi~p~~a~ 313 (779)
-.-+-+.+--| ..++++-+++. -+|=+||=|-.-- ..=.|-...
T Consensus 421 i~~~g~~l~vPMpGHpi~~~~~~~~~~D~~rL~~Lik~HDvVFLl~DsRE~RWLPtvLc 479 (689)
T TIGR01381 421 IEASGYRLEVPMPGHPIDEKDVDELLEDIKRLEELIKEHDVVFLLLDSREARWLPTVLC 479 (689)
T ss_pred HHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHH
T ss_conf 20153178616888888722126689999999998650053553013650022378997
No 131
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=92.99 E-value=0.42 Score=26.63 Aligned_cols=55 Identities=13% Similarity=0.034 Sum_probs=39.7
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCEEECCCHH
Q ss_conf 946998247740467999999852750899955989999999984987665468423062025
Q gi|254780137|r 457 SKRILFSAGEDERVLRATQILIKENIARPVLIGSLLTIQDNIRRHDLQIIATKDFDVIDLNNK 519 (779)
Q Consensus 457 pKRIVfaEgeD~rVLrAA~~~~eeGia~PILVG~~e~I~~~~~~~gL~l~~~~dieIidp~~~ 519 (779)
..+++. -|--+-=|-+++.++..|-.+.|.+...+.-.+.++++|.+ +++|+.++
T Consensus 170 g~~VlV-~G~G~iGl~~~~~ak~~Ga~~Vi~~d~~~~rl~~a~~~Ga~-------~~i~~~~~ 224 (343)
T PRK09880 170 GKRVFI-SGVGPIGCLIVSAVKTLGAAEIVCADLSPRSLSLARQMGAD-------VLVNPQND 224 (343)
T ss_pred CCEEEE-ECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCC-------EEECCCCC
T ss_conf 988999-84776799999999986998799997978999999972997-------99879874
No 132
>PRK10083 putative dehydrogenase; Provisional
Probab=92.98 E-value=0.53 Score=25.94 Aligned_cols=39 Identities=10% Similarity=0.059 Sum_probs=16.7
Q ss_pred CCCCHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHCCC
Q ss_conf 7740467999999852-75089995598999999998498
Q gi|254780137|r 465 GEDERVLRATQILIKE-NIARPVLIGSLLTIQDNIRRHDL 503 (779)
Q Consensus 465 geD~rVLrAA~~~~ee-Gia~PILVG~~e~I~~~~~~~gL 503 (779)
|--+--|-+++.+... |....|.+.+.+.=.+.++++|.
T Consensus 168 G~G~iGl~~~~~~~~~~ga~~Vi~~d~~~~rl~~A~~~GA 207 (339)
T PRK10083 168 GAGPVGLTIVQVLKGVYGVKNVIVADRIDERLALAKESGA 207 (339)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCC
T ss_conf 8765999999999985699789993798999999997199
No 133
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=92.96 E-value=0.71 Score=25.04 Aligned_cols=127 Identities=14% Similarity=0.199 Sum_probs=81.0
Q ss_pred CHHHHHHHHHHHHHHHHCCCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCC
Q ss_conf 18999999999999970988224117874254256789999998198857589995596030787332667889774508
Q gi|254780137|r 180 GTAVTVTAATLNGMKLVGKKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKS 259 (779)
Q Consensus 180 GTa~v~lA~llnAl~~~gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~ 259 (779)
=|+.=+.|+=--|.+...++ -.++.++|+|.=+-.-.+.+.... .-++++++++. .+....+..++....
T Consensus 98 lT~~RTaA~savA~~~l~~~--~~~l~iiG~G~QA~~~~~a~~~v~-~i~~v~v~~r~-------~~~a~~f~~~~~~~~ 167 (302)
T PRK06407 98 LGQIRTGAVTAYATSILHKN--VENFTIIGSGFQAETQLEGMASVY-NPKRIRVYSRN-------FDHARAFAERFSKEF 167 (302)
T ss_pred HHHHHHHHHHHHHHHHHCCC--CCEEEEEEEHHHHHHHHHHHHHHC-CCCEEEEEECC-------HHHHHHHHHHHHHHC
T ss_conf 56788899999999975899--878999966599999999999740-77389998088-------899999999986440
Q ss_pred C-----CCCHHHHCCCCCEEEECCC--CCCCCHHHHHHCCCCCEEEEECCCCC---CCCHHHHHHHCCCEEE
Q ss_conf 8-----9888886058837862578--87789889972189977999178720---0998899851898798
Q gi|254780137|r 260 G-----PKPLSETMNNADVFLGLSV--AGALDPAILKFMAEKPLIMVLANPNP---EAMPDEIKKVRPDAMI 321 (779)
Q Consensus 260 ~-----~~~l~ea~~~adv~iG~S~--~g~~t~e~v~~M~~~PiIfaLsNP~p---Ei~p~~a~~~~g~aiv 321 (779)
+ ..+.++++.++||++.++. .-+|..+|++ +.--|-+..--+| |+.|+.... .+.+|
T Consensus 168 ~~~v~~~~~~e~av~~aDiI~taT~s~~Pv~~~~~l~---~g~hi~aiGa~~p~~~Eld~~ll~~--a~~vv 234 (302)
T PRK06407 168 GVDIRPVDNAEAALRDADTITSITNSDTPIFNRKYLG---DEYHVNLAGSNYPNRREAEHSVLND--ADIVV 234 (302)
T ss_pred CCCEEEECCHHHHHHHCCEEEEECCCCCCCCCHHHCC---CCCEEEEECCCCCCCCCCCHHHHHH--CCEEE
T ss_conf 9957994899999834999999418988671588879---9948996379999853079999961--99999
No 134
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=92.85 E-value=0.53 Score=25.95 Aligned_cols=180 Identities=20% Similarity=0.287 Sum_probs=87.7
Q ss_pred HHHCEEEEECCCHHHHHHHHHHHHCCCC-CCCEEEEECCCEEECCCCCCCCHHHHHHHHCCCCCCHHHHCCCCCEEEECC
Q ss_conf 2241178742542567899999981988-575899955960307873326678897745088988888605883786257
Q gi|254780137|r 200 FSDIKIVTLGAGAAALACLNLLVTMGVR-RENIWVYDLEGLVYEGREKKFDKWKSVYAQKSGPKPLSETMNNADVFLGLS 278 (779)
Q Consensus 200 l~~~~iv~~GaGaAg~~~a~ll~~~g~~-~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~~~~~l~ea~~~adv~iG~S 278 (779)
++..||.|.|+|.=|-++++-+++.+.. .++++++++.. .+.+...+..|.. ....+..+.++.+|+++-+-
T Consensus 2 ~~~~kI~fIG~GnMg~Aii~gll~~~~~~~~~i~v~~~~~------~~~~~~l~~~~~i-~~~~~~~~~~~~~d~Iilav 74 (245)
T PRK07634 2 LTKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSN------VEKLDQLQARYNV-STTTDWKQHVTSVDTIVLAM 74 (245)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCC------HHHHHHHHHHCCC-EECCCHHHHHHHCCEEEEEE
T ss_conf 9999199987589999999999977999960599969999------9999999997197-42277799985599999998
Q ss_pred CCCCCCHHHHHHCC----CCCEEEEECC--------------CCCCCCHHHHHHH-CCCEEECCCCCCCCCCCCHHHHHH
Q ss_conf 88778988997218----9977999178--------------7200998899851-898798058878877435034556
Q gi|254780137|r 279 VAGALDPAILKFMA----EKPLIMVLAN--------------PNPEAMPDEIKKV-RPDAMICTGRSDFSNQVNNVLCFP 339 (779)
Q Consensus 279 ~~g~~t~e~v~~M~----~~PiIfaLsN--------------P~pEi~p~~a~~~-~g~aivatGrs~~pnQ~NN~l~FP 339 (779)
.|..+ +++++.+. .+.||--+|- |.-.++|..+.+. .|--.++.+..-.+.|-.. .-
T Consensus 75 KP~~~-~~vl~~i~~~~~~~~iISi~AGi~i~~l~~~l~~~~~v~R~MPN~~~~v~~g~t~~~~~~~~~~~~~~~---v~ 150 (245)
T PRK07634 75 PPSAH-EELLAELSPLLSNQLVVTVAAGIGPSYLEERLPKGTPVAWIMPNTAAEIGKSISLYTMGQFVNETHQET---LQ 150 (245)
T ss_pred CCHHH-HHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCCCCEEEEECCCHHHHHCCCCEEEECCCCCCHHHHHH---HH
T ss_conf 91749-999999877606988999817998999998748997289945857489758818985388799999999---99
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 65456751373002678999999999987203313667741387676667522366654677867988889998742132
Q gi|254780137|r 340 YIFRGALDCGATAITEEMKVAAARAMAVLVRDVPPDVVFDNFAKESPVFGPNYLIPSPFDPNLISYIAPAVAKAAEEAGV 419 (779)
Q Consensus 340 gif~Gal~~~A~~Itd~M~~aAa~alA~la~~~~~~~~~~~~~~~~~~~g~~yiiP~~fd~r~~~~va~AVa~aA~~sGv 419 (779)
.||.. + -....++|+. +-++-||++. | |--+..+..+..+++++.|.
T Consensus 151 ~lf~~-~-G~~~~v~E~~-~d~~TalsGS--------------------G----------PAy~~~~~eal~~a~~~~Gl 197 (245)
T PRK07634 151 LLLRG-I-GTSQLCTEEE-VHQLTAVTGS--------------------A----------PAFLYYFAESLIEATKSYGV 197 (245)
T ss_pred HHHHC-C-CEEEEECCCC-CCCEEECCCC--------------------C----------HHHHHHHHHHHHHHHHHCCC
T ss_conf 99862-8-5499976412-4624443677--------------------0----------99999999999999998299
Q ss_pred CCCC
Q ss_conf 2354
Q gi|254780137|r 420 ASSP 423 (779)
Q Consensus 420 Ar~p 423 (779)
.+.-
T Consensus 198 ~~~~ 201 (245)
T PRK07634 198 DEAT 201 (245)
T ss_pred CHHH
T ss_conf 9999
No 135
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=92.83 E-value=0.48 Score=26.26 Aligned_cols=104 Identities=18% Similarity=0.222 Sum_probs=62.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCCC-CCCHHHHCCCCCEEEECCC--
Q ss_conf 1178742542567899999981988575899955960307873326678897745088-9888886058837862578--
Q gi|254780137|r 203 IKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKSG-PKPLSETMNNADVFLGLSV-- 279 (779)
Q Consensus 203 ~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~~-~~~l~ea~~~adv~iG~S~-- 279 (779)
.||.+.|||.=|..++-++...+.. ..+.++|.+--..++..-++++-.......+. ..+-.+.++++|+.+=+.+
T Consensus 1 rKI~IIGaG~VG~~~a~~l~~~~l~-~el~L~Di~~~~a~G~a~DL~~~~~~~~~~~~i~~~~~~~~~~aDvvVitAG~~ 79 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIA-DELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGAP 79 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCC-CEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCEEEECCCCC
T ss_conf 9599999698899999999857998-779998189870176999887013305997399608878847899999906766
Q ss_pred --CCCCC--------HHHHHH-------CCCCCEEEEECCCCCCCC
Q ss_conf --87789--------889972-------189977999178720099
Q gi|254780137|r 280 --AGALD--------PAILKF-------MAEKPLIMVLANPNPEAM 308 (779)
Q Consensus 280 --~g~~t--------~e~v~~-------M~~~PiIfaLsNP~pEi~ 308 (779)
+|- | -.++++ .+++.|+.-.+||..-++
T Consensus 80 rk~g~-~R~dLl~~N~~I~k~i~~~i~~~~p~aivivvtNPvDvmt 124 (306)
T cd05291 80 QKPGE-TRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPVDVIT 124 (306)
T ss_pred CCCCC-CHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHH
T ss_conf 79999-8789999789999999999872299718999358167899
No 136
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.82 E-value=0.6 Score=25.57 Aligned_cols=89 Identities=10% Similarity=0.156 Sum_probs=49.0
Q ss_pred CHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCC----CC-CCHHHHCCCCCE
Q ss_conf 8224117874254256789999998198857589995596030787332667889774508----89-888886058837
Q gi|254780137|r 199 KFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKS----GP-KPLSETMNNADV 273 (779)
Q Consensus 199 ~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~----~~-~~l~ea~~~adv 273 (779)
+++..||+++|.|-.|++++++|.+.|. +++++|.+ .+.....+....+.. .. ....+...++|+
T Consensus 11 ~~~gk~v~V~GlG~sG~s~a~~L~~~G~---~v~~~D~~-------~~~~~~~~~~~l~~~g~~~~~g~~~~~~~~~~d~ 80 (481)
T PRK01438 11 DWSGLRVVVAGLGVSGFPAADALHELGA---SVTVVADG-------DDDRSRERAALLEVLGATVRLGDGETTLPEGTEL 80 (481)
T ss_pred HCCCCEEEEEEECHHHHHHHHHHHHCCC---EEEEEECC-------CCCCCHHHHHHHHHCCCEEEECCCHHHHHCCCCE
T ss_conf 7189989999575889999999996799---89999799-------8744868999888549889968875666248999
Q ss_pred EEECCCCCCCCHHHHHHCCCC-CEE
Q ss_conf 862578877898899721899-779
Q gi|254780137|r 274 FLGLSVAGALDPAILKFMAEK-PLI 297 (779)
Q Consensus 274 ~iG~S~~g~~t~e~v~~M~~~-PiI 297 (779)
++-..+=-.-.+++.+..... ||+
T Consensus 81 vV~SPGI~~~~p~~~~a~~~gi~i~ 105 (481)
T PRK01438 81 VVTSPGWRPTHPLLAAAAEAGIPVW 105 (481)
T ss_pred EEECCCCCCCCHHHHHHHHCCCCEE
T ss_conf 9989978998999999998699386
No 137
>TIGR00936 ahcY adenosylhomocysteinase; InterPro: IPR000043 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD^+ as a cofactor. AdoHcyase is a highly conserved protein of about 430 to 470 amino acids. The family contains a glycine-rich region in the central part of AdoHcyase; a region thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity, 0006730 one-carbon compound metabolic process.
Probab=92.72 E-value=0.7 Score=25.11 Aligned_cols=230 Identities=15% Similarity=0.166 Sum_probs=136.8
Q ss_pred CEEEEEEECCCCCHHHHHHHHCCHHHHHHH--------HHHHHHHHHHH-HHCCCCEEEEECCCCEECCCCCCCCCCCCC
Q ss_conf 727998504348855721430730579999--------99988998887-513584799981785002542205105830
Q gi|254780137|r 34 GKLEVNATKMLNDQKDLSLAYSPGVAAPSM--------MIAEDPSKAAM-YTNRSNLVAVVSNGSAVLGLGDIGPLASKP 104 (779)
Q Consensus 34 gk~~~~~~~~~~~~~dl~~~ytpgva~~~~--------~i~~~~~~~~~-~t~~~n~vaVvtdGt~vLGLGdiG~~a~~p 104 (779)
--+.+.+.-|+.||+|-+=|..-...-+|- +-++.-+.+-+ +......=.||-||.-+.-|=--
T Consensus 66 AEv~~~~cNplSTQDdvaAA~~~~~G~~vyA~rGe~~E~Y~~~~~~~l~~~~~~~~p~i~iDDG~Dl~~l~~~------- 138 (422)
T TIGR00936 66 AEVALTACNPLSTQDDVAAALAKAAGIPVYAWRGETNEEYYEALEQVLDAFKDDKEPNIIIDDGADLIFLLHK------- 138 (422)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHH-------
T ss_conf 7488744788774568999998626952888517984899999999985204689975788273678999887-------
Q ss_pred HHHHHHHHHHHHCCCCEEEEECC-CCCHHHHHHHHHHHCCCCCEEEHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHH
Q ss_conf 01008999986269852654238-89889999999870888460622206480157999999987189421687721899
Q gi|254780137|r 105 VMEGKAVLFKKFAGINVFDIEIN-AKDVDTMVSTIVALEPTFGGINLEDIKAPECFEVERILSQKLKIPFLHDDQHGTAV 183 (779)
Q Consensus 105 vmeGK~~L~k~~agid~~~i~~~-~~d~~e~i~~v~~~~p~fg~i~lEDi~~p~~f~i~~~l~~~~~ipvf~DD~qGTa~ 183 (779)
-|-..+|=+- +-.+-. |+-.-.+-...+.=.=.|..||.-|=-. + -+-|-..||+-
T Consensus 139 -~~~~~~~~~~------~G~~EETTTGv~rL~~m~~~G~L~fP~i~VNDa~t-----------K-----~~FDNrYGtg~ 195 (422)
T TIGR00936 139 -EERPELLEKI------IGGSEETTTGVIRLRAMEREGVLKFPVIAVNDAYT-----------K-----YLFDNRYGTGQ 195 (422)
T ss_pred -HHHHHHHHHC------CCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCHH-----------H-----HHHCCCCCCCC
T ss_conf -6678877443------32554514779999999966983144465053012-----------1-----32127755763
Q ss_pred HHHHHHHHHHHHHCCCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCCCC--
Q ss_conf 999999999997098822411787425425678999999819885758999559603078733266788977450889--
Q gi|254780137|r 184 TVTAATLNGMKLVGKKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKSGP-- 261 (779)
Q Consensus 184 v~lA~llnAl~~~gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~~~-- 261 (779)
-++=|++-| |+.=|.=-.+|+.|=|--|-|||.-+.-+|+. +++. + .+|.++.-|.-...
T Consensus 196 S~~DGi~Ra---Tn~LiAGk~vVVaGYGw~G~G~A~r~~G~GA~---V~Vt-----------E-vdPi~ALeA~MdGF~V 257 (422)
T TIGR00936 196 STIDGILRA---TNLLIAGKTVVVAGYGWCGKGIAMRARGLGAR---VIVT-----------E-VDPIRALEAAMDGFRV 257 (422)
T ss_pred CHHHHHHHH---HHHHHCCCEEEEECCCCCCHHHHHHHHCCCCE---EEEE-----------E-ECCHHHHHHCCCCCEE
T ss_conf 024344566---55755388789970386307899985059977---9998-----------2-0733688731478334
Q ss_pred CCHHHHCCCCCEEEECCC-CCCCCHHHHHHCCCCCEEEEECCCCCCCCHHH
Q ss_conf 888886058837862578-87789889972189977999178720099889
Q gi|254780137|r 262 KPLSETMNNADVFLGLSV-AGALDPAILKFMAEKPLIMVLANPNPEAMPDE 311 (779)
Q Consensus 262 ~~l~ea~~~adv~iG~S~-~g~~t~e~v~~M~~~PiIfaLsNP~pEi~p~~ 311 (779)
.++.||.+..||||.+++ ..+..++.++.|-++.|+==---=+-||.-..
T Consensus 258 ~~m~eA~~~gdifiT~TG~~~vI~~~h~~~MkdgAI~aN~GHFdvEI~~~~ 308 (422)
T TIGR00936 258 MTMEEAAKIGDIFITATGNKDVIREEHFEKMKDGAILANAGHFDVEIDVKA 308 (422)
T ss_pred EEHHHHHHHCCEEEECCCCCHHCCHHHHHHCCCCCEEECCCCCCCCCCHHH
T ss_conf 117887550988998158801036488850667728853576531116589
No 138
>pfam00056 Ldh_1_N lactate/malate dehydrogenase, NAD binding domain. L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. N-terminus (this family) is a Rossmann NAD-binding fold. C-terminus is an unusual alpha+beta fold.
Probab=92.71 E-value=0.4 Score=26.79 Aligned_cols=109 Identities=19% Similarity=0.216 Sum_probs=64.9
Q ss_pred CEEEEECCC-HHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCC--CCCCHHHHCCCCCEEEECCC
Q ss_conf 117874254-256789999998198857589995596030787332667889774508--89888886058837862578
Q gi|254780137|r 203 IKIVTLGAG-AAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKS--GPKPLSETMNNADVFLGLSV 279 (779)
Q Consensus 203 ~~iv~~GaG-aAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~--~~~~l~ea~~~adv~iG~S~ 279 (779)
.||.+.||| .=|..++-++...+... .+.++|..-=..++...++++-. .+...+ -..+..+.++++|+.+=+.+
T Consensus 1 mKV~IIGagg~VG~~~A~~l~~~~l~~-elvL~D~~~~~a~g~alDl~~~~-~~~~~~~~~~~~~~~~~~daDiVVitaG 78 (142)
T pfam00056 1 VKVAVVGAGGGVGSSLAFALALQGLAD-ELVLVDINKDKAEGVAMDLSHGS-TFLSVPGIVGGDDYEALKDADVVVITAG 78 (142)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCC-EEEEECCCCCCCHHHHHHHHCCC-CCCCCCEEECCCCHHHHCCCCEEEEECC
T ss_conf 989998987789999999997479663-47885057764117999986144-3478876974883888378999998157
Q ss_pred ----CCCC-------CHHHHH-------HCCCCCEEEEECCCCCCCCHHHHH
Q ss_conf ----8778-------988997-------218997799917872009988998
Q gi|254780137|r 280 ----AGAL-------DPAILK-------FMAEKPLIMVLANPNPEAMPDEIK 313 (779)
Q Consensus 280 ----~g~~-------t~e~v~-------~M~~~PiIfaLsNP~pEi~p~~a~ 313 (779)
+|-= +-++++ ..+++.++.--+||.--+++-..+
T Consensus 79 ~~~k~g~~R~dll~~Na~I~~~i~~~i~~~~p~~ivivvtNPvDvmt~~~~~ 130 (142)
T pfam00056 79 VPRKPGMTRLDLLNRNAGIFKDIVPAIAKSAPDAIVLVVSNPVDILTYIAWK 130 (142)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHH
T ss_conf 7789998778999974699999999999769981999945946889999999
No 139
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=92.68 E-value=0.62 Score=25.45 Aligned_cols=118 Identities=17% Similarity=0.204 Sum_probs=67.6
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCCC-CCCHHHHCCCCCEEEECCC----
Q ss_conf 78742542567899999981988575899955960307873326678897745088-9888886058837862578----
Q gi|254780137|r 205 IVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKSG-PKPLSETMNNADVFLGLSV---- 279 (779)
Q Consensus 205 iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~~-~~~l~ea~~~adv~iG~S~---- 279 (779)
|.+.|||.=|..++-.+...+... .+.++|..--..++..-++++-.......+. ..+-.+.++++|+.+=+.+
T Consensus 1 V~IIGaG~VG~~~A~~l~~~~l~~-el~L~Di~~~~a~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~daDvvVitaG~~rk 79 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLAS-ELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYADAADADIVVITAGAPRK 79 (300)
T ss_pred CEEECCCHHHHHHHHHHHHCCCCC-EEEEECCCCCCCHHHHHHHHHCCCCCCCCEEECCCCHHHHCCCCEEEECCCCCCC
T ss_conf 989896889999999998679988-7999818998115688887725634688539827988996799999987898999
Q ss_pred CCCCC------------HHHHHHC---CCCCEEEEECCCCCCCCHHHHHHH--CCCEEECCC
Q ss_conf 87789------------8899721---899779991787200998899851--898798058
Q gi|254780137|r 280 AGALD------------PAILKFM---AEKPLIMVLANPNPEAMPDEIKKV--RPDAMICTG 324 (779)
Q Consensus 280 ~g~~t------------~e~v~~M---~~~PiIfaLsNP~pEi~p~~a~~~--~g~aivatG 324 (779)
||- | +++.+.+ +++.++.-.+||..-+++-..+.+ ....++.+|
T Consensus 80 pg~-tR~dll~~Na~I~k~i~~~i~~~~p~~ivivvtNPvDv~t~~~~k~sg~p~~rviG~g 140 (300)
T cd00300 80 PGE-TRLDLINRNAPILRSVITNLKKYGPDAIILVVSNPVDILTYVAQKLSGLPKNRVIGSG 140 (300)
T ss_pred CCC-CHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHCCCHHHEEECC
T ss_conf 799-8899999888999999999984199718998579669999999996198844287536
No 140
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=92.62 E-value=0.79 Score=24.73 Aligned_cols=169 Identities=17% Similarity=0.206 Sum_probs=99.9
Q ss_pred HHHHHCCCCEEEEECCCCCHHHHHHHHH-HHCCCCCEEEHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCC---HHHHHHH
Q ss_conf 9986269852654238898899999998-70888460622206480157999999987189421687721---8999999
Q gi|254780137|r 112 LFKKFAGINVFDIEINAKDVDTMVSTIV-ALEPTFGGINLEDIKAPECFEVERILSQKLKIPFLHDDQHG---TAVTVTA 187 (779)
Q Consensus 112 L~k~~agid~~~i~~~~~d~~e~i~~v~-~~~p~fg~i~lEDi~~p~~f~i~~~l~~~~~ipvf~DD~qG---Ta~v~lA 187 (779)
|-....+.|++-+ ..++=++++++... ..+=...++-...|-- +..+++ .|+|+|-.--- .|=-+++
T Consensus 39 l~~~~~~~d~~~~-~~~~v~~~~l~~~~~Lk~I~~~g~Gvd~id~-------~~~~~~-gi~V~nap~~na~~vAE~~~~ 109 (324)
T COG0111 39 LLEALADADALIV-SVTPVTEEVLAAAPNLKAIGRAGAGVDNIDL-------EAATKR-GILVVNAPGGNAISVAELVLA 109 (324)
T ss_pred HHHHCCCCCEEEE-ECCCCCHHHHHCCCCCEEEEEECCCCCCCCH-------HHHHCC-CCEEEECCCCCCHHHHHHHHH
T ss_conf 8874033788999-3688899998218886199990516554363-------553137-437996798653769999999
Q ss_pred HHHHHHH------------------HHCCCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCC
Q ss_conf 9999999------------------7098822411787425425678999999819885758999559603078733266
Q gi|254780137|r 188 ATLNGMK------------------LVGKKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFD 249 (779)
Q Consensus 188 ~llnAl~------------------~~gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~ 249 (779)
.+|+..| ..|..|...++.+.|.|.=|..+++.+..+|+ ++..+|.. ..++
T Consensus 110 ~~L~~~R~~~~~~~~~~~g~W~~~~~~g~el~gkTvGIiG~G~IG~~va~~l~afgm---~v~~~d~~----~~~~---- 178 (324)
T COG0111 110 LLLALARRIPDADASQRRGEWDRKAFRGTELAGKTVGIIGLGRIGRAVAKRLKAFGM---KVIGYDPY----SPRE---- 178 (324)
T ss_pred HHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCC---EEEEECCC----CCCC----
T ss_conf 999996056477899872867523566510169889998987899999999986798---69998898----8600----
Q ss_pred HHHHHHHHCCCCCCHHHHCCCCCEEEECC-----CCCCCCHHHHHHCCCCCEEEEECC
Q ss_conf 78897745088988888605883786257-----887789889972189977999178
Q gi|254780137|r 250 KWKSVYAQKSGPKPLSETMNNADVFLGLS-----VAGALDPAILKFMAEKPLIMVLAN 302 (779)
Q Consensus 250 ~~~~~~a~~~~~~~l~ea~~~adv~iG~S-----~~g~~t~e~v~~M~~~PiIfaLsN 302 (779)
...........+|.+.+..+|++.-.- ..|.+..+.+..|-+.-|+.=.|-
T Consensus 179 --~~~~~~~~~~~~Ld~lL~~aDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aR 234 (324)
T COG0111 179 --RAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAAR 234 (324)
T ss_pred --CCCCCCCEECCCHHHHHHHCCEEEECCCCCCHHHCCCCHHHHHCCCCCCEEEECCC
T ss_conf --01235631102699998769999983899812221379999944899819998887
No 141
>KOG0743 consensus
Probab=92.15 E-value=0.2 Score=28.91 Aligned_cols=16 Identities=19% Similarity=0.283 Sum_probs=8.2
Q ss_pred HHHCCCCCCCCCCHHH
Q ss_conf 7421322354322589
Q gi|254780137|r 414 AEEAGVASSPIEDYEV 429 (779)
Q Consensus 414 A~~sGvAr~pi~d~~~ 429 (779)
||++++-++-++|++.
T Consensus 204 aMd~~~K~~I~~Dl~~ 219 (457)
T KOG0743 204 AMDPDLKERIIDDLDD 219 (457)
T ss_pred CCCHHHHHHHHHHHHH
T ss_conf 1486678999999999
No 142
>PRK06223 malate dehydrogenase; Reviewed
Probab=92.05 E-value=0.41 Score=26.71 Aligned_cols=105 Identities=17% Similarity=0.259 Sum_probs=62.2
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCCC--CCCHHHHCCCCCEEEECCC-
Q ss_conf 1178742542567899999981988575899955960307873326678897745088--9888886058837862578-
Q gi|254780137|r 203 IKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKSG--PKPLSETMNNADVFLGLSV- 279 (779)
Q Consensus 203 ~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~~--~~~l~ea~~~adv~iG~S~- 279 (779)
.||++.|||.-|..++-.+...+.. ..+.++|.+--...+..-++++-.......+. ..+-.+.++++|+.+=+.+
T Consensus 1 mKI~IiGaG~VG~~~a~~l~~~~l~-~el~L~Di~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~d~~~~~daDiVVitag~ 79 (312)
T PRK06223 1 MKISIIGAGNVGATLAHLLALKELG-KDVVLFDIPEGIPQGKALDIAESSAVDGFDAKITGTNDYADIAGSDVVIITAGV 79 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCC-CEEEEECCCCCHHHHHHHHHHCCCCCCCCCCEEEECCCHHHHCCCCEEEEECCC
T ss_conf 9799999698999999999857998-748997699973367988876514336888479837888995799999990677
Q ss_pred ---CCC-----CC------HHHHHHC---CCCCEEEEECCCCCCCC
Q ss_conf ---877-----89------8899721---89977999178720099
Q gi|254780137|r 280 ---AGA-----LD------PAILKFM---AEKPLIMVLANPNPEAM 308 (779)
Q Consensus 280 ---~g~-----~t------~e~v~~M---~~~PiIfaLsNP~pEi~ 308 (779)
+|- +. ++++..+ +++.|+.-.+||.--++
T Consensus 80 ~rk~g~tR~dll~~N~~I~k~i~~~i~~~~p~~iilvvsNPvDv~t 125 (312)
T PRK06223 80 PRKPGMSRDDLLGINAKIMKDVGEGIKKYAPDAIVIVITNPVDAMT 125 (312)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHH
T ss_conf 8999988689999878999999999984099818999369368999
No 143
>PTZ00325 malate dehydrogenase; Provisional
Probab=91.98 E-value=0.94 Score=24.21 Aligned_cols=99 Identities=23% Similarity=0.324 Sum_probs=62.3
Q ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCC--CCCCHHHHCCCCCEEEECCC
Q ss_conf 11787425-4256789999998198857589995596030787332667889774508--89888886058837862578
Q gi|254780137|r 203 IKIVTLGA-GAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKS--GPKPLSETMNNADVFLGLSV 279 (779)
Q Consensus 203 ~~iv~~Ga-GaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~--~~~~l~ea~~~adv~iG~S~ 279 (779)
.||.+.|| |.=|..++-++...+... .+.++|.+.. ++...++++. ..+...+ ...+..|..+++|+.+=+.+
T Consensus 2 ~KV~IIGA~G~VG~s~A~~l~~~~~~~-elvL~Di~~a--~g~a~Dl~~~-~~~~~~~~~~~~~~~e~~~~aDIVVitaG 77 (313)
T PTZ00325 2 FKVAVLGAAGGIGQPLSLLLKRNPYVS-TLSLYDIVGA--PGVAADLSHI-PSPAKVTGYAKGELHKAVDGADVVLIVAG 77 (313)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCC-EEEEEECCCC--HHHHHHHHCC-CCCCCCCEECCCCHHHHHCCCCEEEECCC
T ss_conf 389998999869999999998389977-7999808972--6689888675-55356654527988898489989998889
Q ss_pred ----CCCC-------CHHHHH----HC---CCCCEEEEECCCCC
Q ss_conf ----8778-------988997----21---89977999178720
Q gi|254780137|r 280 ----AGAL-------DPAILK----FM---AEKPLIMVLANPNP 305 (779)
Q Consensus 280 ----~g~~-------t~e~v~----~M---~~~PiIfaLsNP~p 305 (779)
||-= +-++++ .+ +++.||.--|||.-
T Consensus 78 ~~rkpg~tR~dLl~~N~~I~~~i~~~i~~~~~~aiiivvtNPvD 121 (313)
T PTZ00325 78 VPRKPGMTRDDLFNTNAGIVRDLVLACASSAPKAIFGIITNPVN 121 (313)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHH
T ss_conf 88997896899999706999999999997699809997368247
No 144
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.94 E-value=0.76 Score=24.85 Aligned_cols=108 Identities=18% Similarity=0.285 Sum_probs=63.2
Q ss_pred HHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCC----CCCCHHHHCCCCCEEE
Q ss_conf 224117874254256789999998198857589995596030787332667889774508----8988888605883786
Q gi|254780137|r 200 FSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKS----GPKPLSETMNNADVFL 275 (779)
Q Consensus 200 l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~----~~~~l~ea~~~adv~i 275 (779)
|+..||.|+|.|-.|++++++|...|. +++.+|.+ . .+.+.+....+.... -.....+-+.+.|+++
T Consensus 12 l~~kkv~i~GlG~sG~a~a~~L~~~g~---~v~~~D~~-----~-~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~d~vv 82 (458)
T PRK01710 12 IKNKKVAVVGIGVSNIPLIKFLVKLGA---KVTAFDKK-----S-EEELGEISLELKEKGVNLELGENYLDKLTGFDVIF 82 (458)
T ss_pred HCCCEEEEEEECHHHHHHHHHHHHCCC---EEEEEECC-----C-CHHHHHHHHHHHHCCCEEEECCCHHHHCCCCCEEE
T ss_conf 789969999787889999999997889---79999898-----8-43148999999857998995784054237888899
Q ss_pred ECCCCCCCCHHHHHHCCCC-CEEEEECCCCCCCCHHHHHH-HCCCEEECCCC
Q ss_conf 2578877898899721899-77999178720099889985-18987980588
Q gi|254780137|r 276 GLSVAGALDPAILKFMAEK-PLIMVLANPNPEAMPDEIKK-VRPDAMICTGR 325 (779)
Q Consensus 276 G~S~~g~~t~e~v~~M~~~-PiIfaLsNP~pEi~p~~a~~-~~g~aivatGr 325 (779)
-.++=..=.+++.+..... ||+ .| .+.+.+ .++..|-=||.
T Consensus 83 ~SPgI~~~~p~~~~a~~~gi~v~-------~e--~el~~~~~~~~~IaVTGT 125 (458)
T PRK01710 83 KTPSMRIDSPELVKAKEEGAYIT-------SE--MEEFIKYCPAKVFGITGS 125 (458)
T ss_pred ECCCCCCCCHHHHHHHHCCCCEE-------CH--HHHHHHHCCCCEEEEECC
T ss_conf 89987998999999998799374-------09--999986375877999368
No 145
>pfam00899 ThiF ThiF family. This family contains a repeated domain in ubiquitin activating enzyme E1 and members of the bacterial ThiF/MoeB/HesA family.
Probab=91.90 E-value=0.7 Score=25.12 Aligned_cols=36 Identities=19% Similarity=0.418 Sum_probs=31.8
Q ss_pred HCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCE
Q ss_conf 41178742542567899999981988575899955960
Q gi|254780137|r 202 DIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGL 239 (779)
Q Consensus 202 ~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gl 239 (779)
+.||++.|+|+-|.-+++.|..+|+. +|.++|.+=+
T Consensus 1 ~skVlivG~GglG~~~~~~La~~Gvg--~i~lvD~D~v 36 (134)
T pfam00899 1 SSRVLVVGAGGLGSPAAEYLARAGVG--KLTLVDFDTV 36 (134)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCC--EEEEEECCCC
T ss_conf 98899989888999999999993897--4999989567
No 146
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=91.78 E-value=0.99 Score=24.06 Aligned_cols=90 Identities=16% Similarity=0.180 Sum_probs=42.2
Q ss_pred CCCCCC-CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC-HHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 675223-666546778679888899987421322354322-589999999862012568899999972158946998247
Q gi|254780137|r 388 FGPNYL-IPSPFDPNLISYIAPAVAKAAEEAGVASSPIED-YEVYRDSLKRFSFPGRSLMKKIFSIAKGTDSKRILFSAG 465 (779)
Q Consensus 388 ~g~~yi-iP~~fd~r~~~~va~AVa~aA~~sGvAr~pi~d-~~~Y~~~L~~rl~~s~~~mr~i~~~AK~~~pKRIVfaEg 465 (779)
||-.|+ +|.|.-.+-..+.-.++++. +| ++++. ++..|.+|.. .+.+.-+.-..||+++. |
T Consensus 245 ~giP~~~~~~p~G~~~Td~fl~~l~~~---~G---~~vpe~~~~er~rl~d----------a~~d~h~~l~gkrvai~-g 307 (417)
T cd01966 245 TGVPYYVFPSLTGLEAVDALIATLAKL---SG---RPVPEKIRRQRAQLQD----------AMLDGHFYLGGKRVAIA-L 307 (417)
T ss_pred HCCCEEECCCCCCHHHHHHHHHHHHHH---HC---CCCCHHHHHHHHHHHH----------HHHHHHHHHCCCEEEEE-C
T ss_conf 799838307861558789999999998---28---9984999999999999----------99999998569779998-7
Q ss_pred CCCHHHHHHHHHHHCCCEE-EEEECCHHHH
Q ss_conf 7404679999998527508-9995598999
Q gi|254780137|r 466 EDERVLRATQILIKENIAR-PVLIGSLLTI 494 (779)
Q Consensus 466 eD~rVLrAA~~~~eeGia~-PILVG~~e~I 494 (779)
+-..++--+..+.|.|+-- .+..+.....
T Consensus 308 d~d~~~~l~~fL~ElG~~~~~~~~~~~~~~ 337 (417)
T cd01966 308 EPDLLAALSSFLAEMGAEIVAAVATTDSPA 337 (417)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEEECCCCHH
T ss_conf 716999999999978998889997899857
No 147
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=91.71 E-value=0.36 Score=27.11 Aligned_cols=45 Identities=20% Similarity=0.276 Sum_probs=35.6
Q ss_pred HHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCC
Q ss_conf 2241178742542567899999981988575899955960307873
Q gi|254780137|r 200 FSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGRE 245 (779)
Q Consensus 200 l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~ 245 (779)
|++.+|||.|+|.||+.+++.|...+.. ..|.++....-+-=+|+
T Consensus 1 M~~~~iVIIG~G~AG~~aA~~lR~~g~~-g~Itli~~E~~~PY~Rp 45 (400)
T PRK09754 1 MKEKTIIIVGGGQAAAMAAASLRQQGFT-GELHLFSDERHLPYERP 45 (400)
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHCCCC-CCEEEEECCCCCCCCCH
T ss_conf 9967299997759999999999806949-97999989999988651
No 148
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=91.69 E-value=0.47 Score=26.32 Aligned_cols=102 Identities=18% Similarity=0.233 Sum_probs=62.0
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCCCC--CCHHHHCCCCCEEEECCC---
Q ss_conf 787425425678999999819885758999559603078733266788977450889--888886058837862578---
Q gi|254780137|r 205 IVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKSGP--KPLSETMNNADVFLGLSV--- 279 (779)
Q Consensus 205 iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~~~--~~l~ea~~~adv~iG~S~--- 279 (779)
|.+.|||.=|..++-.+..-+.. .+.++|.+.-..++...++++-...+-..+.. .+-.+.++++|+.+=+.+
T Consensus 1 V~IIGaG~VG~~~a~~l~~~~~~--el~L~D~~~~~a~g~a~DL~~~~~~~~~~~~v~~~~d~~~~~daDvvVitaG~~~ 78 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELG--DVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDYEDIAGSDVVVITAGIPR 78 (300)
T ss_pred CEEECCCHHHHHHHHHHHHCCCC--EEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHCCCCEEEEECCCCC
T ss_conf 98989688899999999857996--7999809998005798877613201589858994788799479989999067789
Q ss_pred -CCCCCH--------HHHHH-------CCCCCEEEEECCCCCCCCH
Q ss_conf -877898--------89972-------1899779991787200998
Q gi|254780137|r 280 -AGALDP--------AILKF-------MAEKPLIMVLANPNPEAMP 309 (779)
Q Consensus 280 -~g~~t~--------e~v~~-------M~~~PiIfaLsNP~pEi~p 309 (779)
||- |+ +++++ .+++.|+.-.|||.--.++
T Consensus 79 k~g~-tR~dLl~~N~~I~~~i~~~i~~~~p~~i~lvvsNPvDv~t~ 123 (300)
T cd01339 79 KPGM-SRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTY 123 (300)
T ss_pred CCCC-CHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHH
T ss_conf 9899-88999998899999999999965998489982793899999
No 149
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.58 E-value=0.82 Score=24.64 Aligned_cols=32 Identities=22% Similarity=0.380 Sum_probs=28.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf 11787425425678999999819885758999559
Q gi|254780137|r 203 IKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLE 237 (779)
Q Consensus 203 ~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~ 237 (779)
.+|.+.|||.=|.+||-++...|. +++++|..
T Consensus 6 k~VaViGAG~MG~gIA~~~a~~G~---~V~l~D~~ 37 (310)
T PRK06130 6 QNLAIIGAGAMGSGIAALFASKGL---DVVLIDPM 37 (310)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC---CEEEEECC
T ss_conf 889897877999999999985899---88999799
No 150
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=91.26 E-value=1.1 Score=23.71 Aligned_cols=123 Identities=13% Similarity=0.157 Sum_probs=83.2
Q ss_pred HHHHHHHCCCCCCCCCCCHH---HHHHHHHHHHHHHH---------C---------------CCHHHCEEEEECCCHHHH
Q ss_conf 99998718942168772189---99999999999970---------9---------------882241178742542567
Q gi|254780137|r 163 RILSQKLKIPFLHDDQHGTA---VTVTAATLNGMKLV---------G---------------KKFSDIKIVTLGAGAAAL 215 (779)
Q Consensus 163 ~~l~~~~~ipvf~DD~qGTa---~v~lA~llnAl~~~---------g---------------k~l~~~~iv~~GaGaAg~ 215 (779)
+.+++ .+|+|.|-=-..+- =-+++.+|+.+|-. | ..|...++-+.|-|.-|-
T Consensus 80 ~aa~~-~gI~V~n~p~~~~~aVAE~~l~~iL~l~r~i~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktlGIvG~G~IG~ 158 (311)
T PRK08410 80 EYAKK-RGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDNYVKSGEYSKSPIFTHISRPLGEIKGKKWGIIGLGTIGK 158 (311)
T ss_pred HHHHH-CCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHH
T ss_conf 99997-99689927997848899999999999985579999999716533465222247653510588899984474899
Q ss_pred HHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCCCCCCHHHHCCCCCEEEE-CC----CCCCCCHHHHHH
Q ss_conf 8999999819885758999559603078733266788977450889888886058837862-57----887789889972
Q gi|254780137|r 216 ACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKSGPKPLSETMNNADVFLG-LS----VAGALDPAILKF 290 (779)
Q Consensus 216 ~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~~~~~l~ea~~~adv~iG-~S----~~g~~t~e~v~~ 290 (779)
.+++++..+|+ +++.+|+.+.-.. .. ....+|.|.++.+|++.- +. ..+.+.++.++.
T Consensus 159 ~va~~l~~fGm---~V~~~d~~~~~~~------~~--------~~~~~l~ell~~sDivslh~Plt~~T~~li~~~~l~~ 221 (311)
T PRK08410 159 RVAKIAQAFGA---EVVYYSTSGKNKN------SE--------YERLSLEELLKTSDIISIHAPLNEKTKNLINYEELKL 221 (311)
T ss_pred HHHHHHHHCCC---EEEEECCCCCCCC------CC--------CEECCHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHH
T ss_conf 99999997699---8999898431245------78--------1357899998737801453357622234012899963
Q ss_pred CCCCCEEEEECCC
Q ss_conf 1899779991787
Q gi|254780137|r 291 MAEKPLIMVLANP 303 (779)
Q Consensus 291 M~~~PiIfaLsNP 303 (779)
|.+..++.=.|--
T Consensus 222 Mk~~a~lIN~aRG 234 (311)
T PRK08410 222 LKDGAILINVGRG 234 (311)
T ss_pred CCCCCEEEEECCC
T ss_conf 0457559992574
No 151
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.25 E-value=1.1 Score=23.70 Aligned_cols=33 Identities=21% Similarity=0.295 Sum_probs=29.3
Q ss_pred HCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf 411787425425678999999819885758999559
Q gi|254780137|r 202 DIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLE 237 (779)
Q Consensus 202 ~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~ 237 (779)
=.||.+.|||.-|.+||-++...|. +++++|..
T Consensus 3 i~~VaViGaG~mG~~IA~~~a~~G~---~V~l~D~~ 35 (282)
T PRK05808 3 IQKIGVIGAGTMGNGIAQVCAVAGY---DVVMVDIS 35 (282)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC---CEEEEECC
T ss_conf 2689998978899999999995799---38999799
No 152
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=91.14 E-value=1.1 Score=23.78 Aligned_cols=108 Identities=13% Similarity=0.198 Sum_probs=73.5
Q ss_pred HHHHHHHHHHH---------HCCCHHHCEEEEECCCHH-HHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHH
Q ss_conf 99999999997---------098822411787425425-67899999981988575899955960307873326678897
Q gi|254780137|r 185 VTAATLNGMKL---------VGKKFSDIKIVTLGAGAA-ALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSV 254 (779)
Q Consensus 185 ~lA~llnAl~~---------~gk~l~~~~iv~~GaGaA-g~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~ 254 (779)
+-+|++.-|+- -|.+++-.++|+.|.+.= |--.+.||...++ .++.+|..++....+....+.....
T Consensus 36 TP~gv~~LL~~~~i~~~~~~yg~~l~Gk~vvVIGRS~iVGkPla~LL~~~~A---TVt~~d~~~~~~~~~~~~~~~~~~~ 112 (197)
T cd01079 36 TPLAIVKILEFLGIYNKILPYGNRLYGKTITIINRSEVVGRPLAALLANDGA---RVYSVDINGIQVFTRGESIRHEKHH 112 (197)
T ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHCCC---EEEEECCCCEEEEECCCCCCCEEEE
T ss_conf 6999999999718554332357788999899989873154889999973899---6775034421464046652212456
Q ss_pred HHHCCCCCCHHHHCCCCCEEEECC-CCCC-CCHHHHHHCCCCCEEEEE
Q ss_conf 745088988888605883786257-8877-898899721899779991
Q gi|254780137|r 255 YAQKSGPKPLSETMNNADVFLGLS-VAGA-LDPAILKFMAEKPLIMVL 300 (779)
Q Consensus 255 ~a~~~~~~~l~ea~~~adv~iG~S-~~g~-~t~e~v~~M~~~PiIfaL 300 (779)
.......+.+.++.+|++|..- .++. ++.+||+ +..+|.=.
T Consensus 113 --~~~~~~~~~~~~~~aDIvI~avg~p~~~i~~~~vk---~GaivIDv 155 (197)
T cd01079 113 --VTDEEAMTLDCLSQSDVVITGVPSPNYKVPTELLK---DGAICINF 155 (197)
T ss_pred --ECCCCHHHHHHCCCCCEEEECCCCCCCCCCHHHCC---CCCEEEEE
T ss_conf --41421005654234799998878776656675544---89689981
No 153
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=91.11 E-value=0.93 Score=24.25 Aligned_cols=103 Identities=18% Similarity=0.125 Sum_probs=65.7
Q ss_pred CCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCC-------CCCCCHHHHHHHHC----CC------
Q ss_conf 88224117874254256789999998198857589995596030787-------33266788977450----88------
Q gi|254780137|r 198 KKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGR-------EKKFDKWKSVYAQK----SG------ 260 (779)
Q Consensus 198 k~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r-------~~~~~~~~~~~a~~----~~------ 260 (779)
++|.+.+|++.|||.=|..++..|..+|+. +|.++|-+-+=..+. .+.....|..-|+. .|
T Consensus 24 ~~L~~s~VlvvG~GGLG~~~~~yLa~aGvG--~i~i~D~D~ve~sNL~RQ~l~~~~~iG~~K~~~a~~~l~~~np~i~i~ 101 (355)
T PRK05597 24 QSLFDAKVSVIGAGGLGSPALLYLAGAGVG--HITIIDDDVVDLSNLHRQVIHTTAGVGTPKAESAREAMLALNPDVKVT 101 (355)
T ss_pred HHHHCCCEEEECCCHHHHHHHHHHHHCCCC--EEEEEECCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCEE
T ss_conf 998629689987776689999999984997--599972999261213377565412179797999999999878997427
Q ss_pred -------CCCHHHHCCCCCEEEECCCCCCCCHHHHHHC---CCCCEEEEECCC
Q ss_conf -------9888886058837862578877898899721---899779991787
Q gi|254780137|r 261 -------PKPLSETMNNADVFLGLSVAGALDPAILKFM---AEKPLIMVLANP 303 (779)
Q Consensus 261 -------~~~l~ea~~~adv~iG~S~~g~~t~e~v~~M---~~~PiIfaLsNP 303 (779)
.....+.+++.|+.+-+|- +.-|+-++-.. ...|.|++-..=
T Consensus 102 ~~~~~l~~~na~~li~~~DvVvD~tD-n~~tR~lind~c~~~~~PlV~ga~~~ 153 (355)
T PRK05597 102 VSVRRLDWSNALSELADADVILDGSD-NFDTRHVASWAAARLGIPHVWASILG 153 (355)
T ss_pred EEHHHCCHHHHHHHHHCCCEEEECCC-CHHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 53321577789977528878987678-88899999999998699879965244
No 154
>PRK13984 putative oxidoreductase; Provisional
Probab=91.02 E-value=0.75 Score=24.90 Aligned_cols=42 Identities=31% Similarity=0.497 Sum_probs=33.9
Q ss_pred HHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECC----CEEECCCC
Q ss_conf 2411787425425678999999819885758999559----60307873
Q gi|254780137|r 201 SDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLE----GLVYEGRE 245 (779)
Q Consensus 201 ~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~----Gli~~~r~ 245 (779)
...||.+.|+|-||+++|..|..+|. .+.++|+. |++.-+=+
T Consensus 282 tGKKVAVIGsGPAGLaaA~~Lar~Gh---~VtVFE~~~~~GGlL~yGIP 327 (604)
T PRK13984 282 KGKKVAIVGSGPAGLSAAYFLATMGY---EVEVYESLSKPGGVMRYGIP 327 (604)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC---EEEEECCCCCCCCEEEECCC
T ss_conf 89989998986899999999998698---68997456778972331587
No 155
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=90.84 E-value=1.2 Score=23.44 Aligned_cols=196 Identities=17% Similarity=0.176 Sum_probs=114.5
Q ss_pred CCEEEEECCCCEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCC-CCHHHHHHHHHHH--CCCCCEE--EHHHC
Q ss_conf 84799981785002542205105830010089999862698526542388-9889999999870--8884606--22206
Q gi|254780137|r 79 SNLVAVVSNGSAVLGLGDIGPLASKPVMEGKAVLFKKFAGINVFDIEINA-KDVDTMVSTIVAL--EPTFGGI--NLEDI 153 (779)
Q Consensus 79 ~n~vaVvtdGt~vLGLGdiG~~a~~pvmeGK~~L~k~~agid~~~i~~~~-~d~~e~i~~v~~~--~p~fg~i--~lEDi 153 (779)
.-..+||-.|..- |+.=-...|.--.+ -.||.++-..+.. .+.+|+.+.+..+ -|+.-|| ||-=.
T Consensus 30 ~P~Lavilvgddp---------aS~~YV~~K~k~~~-~iGi~~~~~~l~~~~t~~eLl~~I~~lN~D~~v~GIlVQlPLp 99 (283)
T COG0190 30 KPGLAVILVGDDP---------ASQVYVRSKKKAAE-EIGIASELYDLPEDITEEELLALIDELNADPEVDGILVQLPLP 99 (283)
T ss_pred CCEEEEEEECCCH---------HHHHHHHHHHHHHH-HCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCC
T ss_conf 8438999967977---------89999999999999-8197368985787578999999999960898775799947788
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCC--------CCCCHHHHHHHHHHHHHHHHCCCHHHCEEEEECCCHH-HHHHHHHHHHC
Q ss_conf 48015799999998718942168--------7721899999999999997098822411787425425-67899999981
Q gi|254780137|r 154 KAPECFEVERILSQKLKIPFLHD--------DQHGTAVTVTAATLNGMKLVGKKFSDIKIVTLGAGAA-ALACLNLLVTM 224 (779)
Q Consensus 154 ~~p~~f~i~~~l~~~~~ipvf~D--------D~qGTa~v~lA~llnAl~~~gk~l~~~~iv~~GaGaA-g~~~a~ll~~~ 224 (779)
+.-..-.++++..-.-|+-=||- .+.+---.+-+|++.-++-.+-+++..++|+.|.+-= |--++.||...
T Consensus 100 ~hld~~~il~~I~p~KDVDG~hp~N~g~L~~~~~~~~PCTp~gi~~ll~~~~i~l~Gk~~vVVGrS~iVGkPla~lL~~~ 179 (283)
T COG0190 100 KHLDEQKLLQAIDPEKDVDGFHPYNLGKLAQGEPGFLPCTPAGIMTLLEEYGIDLRGKNVVVVGRSNIVGKPLALLLLNA 179 (283)
T ss_pred CCCCHHHHHHHCCCCCCCCCCCHHHHCCHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHC
T ss_conf 77788889860586778566696673532108998778989999999998399878988999899876767999999867
Q ss_pred CCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCCCCCCHHHHCCCCCEEEECCC-CCCCCHHHHHHCCCCCEEEEE-CC
Q ss_conf 9885758999559603078733266788977450889888886058837862578-877898899721899779991-78
Q gi|254780137|r 225 GVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKSGPKPLSETMNNADVFLGLSV-AGALDPAILKFMAEKPLIMVL-AN 302 (779)
Q Consensus 225 g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~~~~~l~ea~~~adv~iG~S~-~g~~t~e~v~~M~~~PiIfaL-sN 302 (779)
+. -+.+|+|+. +.|.+..+.||+++-.-+ |+.|+.+||+ +..+|.-- -|
T Consensus 180 na---TVtvcHs~T-----------------------~~l~~~~k~ADIvv~AvG~p~~i~~d~vk---~gavVIDVGin 230 (283)
T COG0190 180 NA---TVTVCHSRT-----------------------KDLASITKNADIVVVAVGKPHFIKADMVK---PGAVVIDVGIN 230 (283)
T ss_pred CC---EEEEECCCC-----------------------CCHHHHHHHCCEEEEECCCCCCCCCCCCC---CCCEEEECCCC
T ss_conf 99---899975778-----------------------88789862389999954875645514135---78789964775
Q ss_pred CCC------CCCHHHHH
Q ss_conf 720------09988998
Q gi|254780137|r 303 PNP------EAMPDEIK 313 (779)
Q Consensus 303 P~p------Ei~p~~a~ 313 (779)
..+ ...++.+.
T Consensus 231 rv~~~kl~GDVdf~~v~ 247 (283)
T COG0190 231 RVNDGKLVGDVDFDSVK 247 (283)
T ss_pred CCCCCCEEEECCHHHHH
T ss_conf 40488357604689988
No 156
>KOG0685 consensus
Probab=90.80 E-value=0.37 Score=27.04 Aligned_cols=94 Identities=26% Similarity=0.301 Sum_probs=48.0
Q ss_pred CCCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEE--------------CCCEEECCCC----CCCCHHHHHHHHC
Q ss_conf 988224117874254256789999998198857589995--------------5960307873----3266788977450
Q gi|254780137|r 197 GKKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYD--------------LEGLVYEGRE----KKFDKWKSVYAQK 258 (779)
Q Consensus 197 gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D--------------~~Gli~~~r~----~~~~~~~~~~a~~ 258 (779)
.+...+-||||.|||.||++.|.-|...|.. ++.++. .+|.|.-|-. ..-|+.. ..++.
T Consensus 16 ~~~~~~~kIvIIGAG~AGLaAA~rLle~gf~--~~~IlEa~dRIGGRI~ti~~~d~~ielGAqwihG~~gNpVY-~la~~ 92 (498)
T KOG0685 16 LKARGNAKIVIIGAGIAGLAAATRLLENGFI--DVLILEASDRIGGRIHTIPFADGVIELGAQWIHGEEGNPVY-ELAKE 92 (498)
T ss_pred HHCCCCCEEEEECCCHHHHHHHHHHHHHCCC--EEEEEEECCCCCCEEEEEECCCCEEEECCEEECCCCCCHHH-HHHHH
T ss_conf 4245796499989856779999999982896--48999704666755766872787376246663377887399-99987
Q ss_pred CCCCCHHHHCCCC--CEEEECCCCCCCCHHHHHHCCC
Q ss_conf 8898888860588--3786257887789889972189
Q gi|254780137|r 259 SGPKPLSETMNNA--DVFLGLSVAGALDPAILKFMAE 293 (779)
Q Consensus 259 ~~~~~l~ea~~~a--dv~iG~S~~g~~t~e~v~~M~~ 293 (779)
.....+.+.-..+ +-+...|.+-.+.++.+..+++
T Consensus 93 ~g~~~~~~~tg~~~~~~~~~~~~g~~V~~~~~~~~~~ 129 (498)
T KOG0685 93 YGDLKLLEVTGPAYVDNFHTRSNGEVVPEELLDELNE 129 (498)
T ss_pred HCCCCEECCCCCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 2853201157741133047875686276999999999
No 157
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=90.71 E-value=0.32 Score=27.42 Aligned_cols=41 Identities=27% Similarity=0.423 Sum_probs=36.2
Q ss_pred CCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEE
Q ss_conf 8822411787425425678999999819885758999559603
Q gi|254780137|r 198 KKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLV 240 (779)
Q Consensus 198 k~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli 240 (779)
++|.+.+|++.|+|.=|..++..|..+|+. ++.++|.+=+-
T Consensus 20 ~kL~~a~VlVvGaGGLGs~~a~~La~aGVG--~i~ivD~D~Ve 60 (339)
T PRK07688 20 QKIREKHVLIIGAGALGTANAEMLVRAGVG--KVTIVDRDYVE 60 (339)
T ss_pred HHHHCCCEEEECCCHHHHHHHHHHHHCCCC--EEEEEECCEEC
T ss_conf 998629789987777779999999984898--29998099924
No 158
>TIGR00050 rRNA_methyl_1 RNA methyltransferase, TrmH family, group 1; InterPro: IPR004384 These proteins are part of the trmH (spoU) family of rRNA methylases. The spoU gene of Escherichia coli codes for a protein that shows strong similarities to previously characterised 2'-O-methyltransferases . TrmH is a tRNA (guanosine-2'-O-)-methyltransferase (2.1.1.34 from EC), which specifically methylates guanosine-18 in various tRNAs using S-adenosyl-L-methionine.; GO: 0008173 RNA methyltransferase activity.
Probab=90.41 E-value=0.93 Score=24.25 Aligned_cols=72 Identities=17% Similarity=0.303 Sum_probs=49.6
Q ss_pred HHCEEEEEC-CCHHHHH-HHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCC-----C---CCCHHHHCC-
Q ss_conf 241178742-5425678-9999998198857589995596030787332667889774508-----8---988888605-
Q gi|254780137|r 201 SDIKIVTLG-AGAAALA-CLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKS-----G---PKPLSETMN- 269 (779)
Q Consensus 201 ~~~~iv~~G-aGaAg~~-~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~-----~---~~~l~ea~~- 269 (779)
..++||+.- .++-.+| +|+-++.+|.. +.|+++.+- +.+++...+.|..- + ..+|.|++.
T Consensus 3 ~~I~ivLVep~~~gNvG~~ARaMKnmGl~--~L~Lv~p~~-------~~~~~eay~~A~~A~Di~~nA~vv~~L~Eal~s 73 (253)
T TIGR00050 3 ENISIVLVEPKHSGNVGSIARAMKNMGLE--ELILVNPRV-------DILEEEAYALAAHAKDILENAKVVDDLDEALDS 73 (253)
T ss_pred CEEEEEEEECCCCCCHHHHHHHHHHHCCC--CCEEECCCC-------CCCCHHHHHHHHHHHHHHCCCEEECCHHHHHHH
T ss_conf 12478886179986446999998762700--125646622-------556878999872027865875474267999873
Q ss_pred -CCCEEEECC-CCC
Q ss_conf -883786257-887
Q gi|254780137|r 270 -NADVFLGLS-VAG 281 (779)
Q Consensus 270 -~adv~iG~S-~~g 281 (779)
+.|..||+| ++|
T Consensus 74 ld~~~~vgTsGaRG 87 (253)
T TIGR00050 74 LDCDLVVGTSGARG 87 (253)
T ss_pred CCCCEEEECCCCCC
T ss_conf 19970786267888
No 159
>PRK05086 malate dehydrogenase; Provisional
Probab=90.26 E-value=1.4 Score=23.10 Aligned_cols=103 Identities=24% Similarity=0.291 Sum_probs=61.2
Q ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHC-C--CCCCHHHHCCCCCEEEECC
Q ss_conf 11787425-425678999999819885758999559603078733266788977450-8--8988888605883786257
Q gi|254780137|r 203 IKIVTLGA-GAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQK-S--GPKPLSETMNNADVFLGLS 278 (779)
Q Consensus 203 ~~iv~~Ga-GaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~-~--~~~~l~ea~~~adv~iG~S 278 (779)
.||.+.|| |.=|..++-+|..-+..-+.+.++|..- ..++..-+|++ ..+... . ...+..++++++|+.+=+.
T Consensus 1 mKV~IiGA~G~VG~s~A~~l~~~~~~~~el~L~Di~~-~~~G~alDL~h--~~~~~~~~~~~~~~~~~~l~~adiVvitA 77 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAP-VTPGVAVDLSH--IPTAVKIKGFSGEDPTPALEGADVVLISA 77 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEECCCC-CCCCHHHHHHC--CCCCCCCCEEECCCHHHHHCCCCEEEECC
T ss_conf 9899998998699999999982898777499975888-86105656547--87546653461698678717999999878
Q ss_pred C----CCCCC-H-----------HHHHHC---CCCCEEEEECCCCCCCCH
Q ss_conf 8----87789-8-----------899721---899779991787200998
Q gi|254780137|r 279 V----AGALD-P-----------AILKFM---AEKPLIMVLANPNPEAMP 309 (779)
Q Consensus 279 ~----~g~~t-~-----------e~v~~M---~~~PiIfaLsNP~pEi~p 309 (779)
+ ||- | . ++++.. +++.||.--|||.--.+|
T Consensus 78 G~~rkpG~-tR~dLl~~Na~I~~~i~~~I~~~~p~aiiivvsNPvD~mt~ 126 (312)
T PRK05086 78 GVARKPGM-DRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPVNTTVA 126 (312)
T ss_pred CCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHH
T ss_conf 98998589-88999998789999999988720897189995483277899
No 160
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=90.13 E-value=1.3 Score=23.17 Aligned_cols=46 Identities=13% Similarity=-0.008 Sum_probs=24.7
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCC
Q ss_conf 94699824774046799999985275089995598999999998498
Q gi|254780137|r 457 SKRILFSAGEDERVLRATQILIKENIARPVLIGSLLTIQDNIRRHDL 503 (779)
Q Consensus 457 pKRIVfaEgeD~rVLrAA~~~~eeGia~PILVG~~e~I~~~~~~~gL 503 (779)
.+++++. |.-.-=|-|++.++..|....+.++..+.=.+.++++|-
T Consensus 161 g~~vlV~-GaG~vGl~aiq~ak~~Ga~~V~~~d~~~~kl~~a~~lGA 206 (347)
T PRK10309 161 GKNVIII-GAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGA 206 (347)
T ss_pred CCEEEEE-CCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCC
T ss_conf 9869998-998389999999998599769999289999999997299
No 161
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=89.93 E-value=0.64 Score=25.36 Aligned_cols=96 Identities=15% Similarity=0.199 Sum_probs=51.6
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCC-------CCCEEEEECCCE-------EECCCCC--CCCHHHHHHHHCCCCCCHHHH
Q ss_conf 178742542567899999981988-------575899955960-------3078733--266788977450889888886
Q gi|254780137|r 204 KIVTLGAGAAALACLNLLVTMGVR-------RENIWVYDLEGL-------VYEGREK--KFDKWKSVYAQKSGPKPLSET 267 (779)
Q Consensus 204 ~iv~~GaGaAg~~~a~ll~~~g~~-------~~~i~~~D~~Gl-------i~~~r~~--~~~~~~~~~a~~~~~~~l~ea 267 (779)
||.+.|||+=|++++.+|..-|.. .-++|..|.... +.+.|.+ ++...+.+- .-.-..++.++
T Consensus 1 KI~ViGaGawGTALA~~La~ng~~~~~~~~~~V~lw~r~~~~~~~~~~~~in~~~~N~~yLp~i~Lp~-~i~~t~dl~~~ 79 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPA-NLVAVPDLVEA 79 (342)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCC-CEEEECCHHHH
T ss_conf 98998779999999999997488654557863799972322100468999974496867798784898-60896689999
Q ss_pred CCCCCEEEECCCCCCCCHHHHHHC----CCCCEEEEEC
Q ss_conf 058837862578877898899721----8997799917
Q gi|254780137|r 268 MNNADVFLGLSVAGALDPAILKFM----AEKPLIMVLA 301 (779)
Q Consensus 268 ~~~adv~iG~S~~g~~t~e~v~~M----~~~PiIfaLs 301 (779)
++++|+++ +..|-.+.+++++.. .++.++.-++
T Consensus 80 ~~~ad~ii-~avPs~~~r~~~~~l~~~l~~~~~ii~~s 116 (342)
T TIGR03376 80 AKGADILV-FVIPHQFLEGICKQLKGHVKPNARAISCI 116 (342)
T ss_pred HHCCCEEE-EECCHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 83698899-96686999999999985458887389842
No 162
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=89.93 E-value=1.4 Score=22.96 Aligned_cols=105 Identities=19% Similarity=0.253 Sum_probs=60.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCCCCC--CHHHHCCCCCEEEECC--
Q ss_conf 117874254256789999998198857589995596030787332667889774508898--8888605883786257--
Q gi|254780137|r 203 IKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKSGPK--PLSETMNNADVFLGLS-- 278 (779)
Q Consensus 203 ~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~~~~--~l~ea~~~adv~iG~S-- 278 (779)
.||++.|||.=|-..+-+|...+... .+.++|..==..++-.-++.+.....-...... .-.+.++++|+.+=+.
T Consensus 1 ~KV~viGaG~VG~s~a~~l~~~~~~~-el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitAG~ 79 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGS-ELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITAGV 79 (313)
T ss_pred CEEEEECCCHHHHHHHHHHHCCCCCC-EEEEEECCCCCCCCHHCCHHHCCHHCCCCEEEECCCCHHHHCCCCEEEEECCC
T ss_conf 93999898747899999996255566-59999746665640110253340002676188347870231699899996888
Q ss_pred --CCCCCC------------HHHHHHC---CCCCEEEEECCCCCCCCH
Q ss_conf --887789------------8899721---899779991787200998
Q gi|254780137|r 279 --VAGALD------------PAILKFM---AEKPLIMVLANPNPEAMP 309 (779)
Q Consensus 279 --~~g~~t------------~e~v~~M---~~~PiIfaLsNP~pEi~p 309 (779)
.|| -| +++.+.+ +++.|++-.+||.-=.++
T Consensus 80 prKpG-mtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNPvD~~ty 126 (313)
T COG0039 80 PRKPG-MTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPVDILTY 126 (313)
T ss_pred CCCCC-CCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHH
T ss_conf 89989-977999986599999999999965997299994594788999
No 163
>PRK08291 ornithine cyclodeaminase; Validated
Probab=89.87 E-value=1.5 Score=22.89 Aligned_cols=211 Identities=15% Similarity=0.184 Sum_probs=112.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHH
Q ss_conf 16877218999999999999970988224117874254256789999998198857589995596030787332667889
Q gi|254780137|r 174 LHDDQHGTAVTVTAATLNGMKLVGKKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKS 253 (779)
Q Consensus 174 f~DD~qGTa~v~lA~llnAl~~~gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~ 253 (779)
+.|...=|+.=+.|+=--|.|..-++ ...++.++|+|.=+-...+.+.... .-++++++++. .+..+.+..
T Consensus 105 l~d~~~lT~~RTaA~salaa~~LAr~-da~~l~iiG~G~QA~~~l~Al~~v~-~i~~v~v~~r~-------~~~a~~f~~ 175 (330)
T PRK08291 105 LLDNGYLTDVRTAAAGAVAARHLARE-DASRVAVFGAGEQARLQLEALTLVR-DIREVRVWARD-------AAKAEAFAA 175 (330)
T ss_pred ECCCCHHHHHHHHHHHHHHHHHHCCC-CCCEEEEECCHHHHHHHHHHHHHHC-CCCEEEEECCC-------HHHHHHHHH
T ss_conf 83786365657889899999974589-9856999876488999999999738-97689998389-------899999999
Q ss_pred HHHHCC-----CCCCHHHHCCCCCEEEECC--CCCCCCHHHHHHCCCCCEEEEECCCCC---CCCHHHHHHHCCCEEECC
Q ss_conf 774508-----8988888605883786257--887789889972189977999178720---099889985189879805
Q gi|254780137|r 254 VYAQKS-----GPKPLSETMNNADVFLGLS--VAGALDPAILKFMAEKPLIMVLANPNP---EAMPDEIKKVRPDAMICT 323 (779)
Q Consensus 254 ~~a~~~-----~~~~l~ea~~~adv~iG~S--~~g~~t~e~v~~M~~~PiIfaLsNP~p---Ei~p~~a~~~~g~aivat 323 (779)
++.... ...+.++++.++||++.++ ..-+|..+|++ +.--|-+..-..| |+.|+... +.+.+|..
T Consensus 176 ~~~~~~g~~v~~~~~~~~av~~aDIIvtaT~s~~Pv~~~~~lk---pG~hI~aiGs~~p~~rEld~~~~~--~a~~vv~D 250 (330)
T PRK08291 176 ELRAALGIPVTVARDVHAALAGADIVVTTTPSEEPILKAEWLH---PGLHVTAMGSDAEHKNEIAPAVFA--AADRYVCD 250 (330)
T ss_pred HHHHHHCCCEEEECCHHHHHHCCCEEEEEECCCCCCCCHHHCC---CCCEEEEECCCCCCCCCCCHHHHH--CCCEEEEC
T ss_conf 9989769966992999999722888999768999501510069---982899706999874524777773--08799969
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCC-CCCCCCCCCHHH
Q ss_conf 8878877435034556654567513730026789999999999872033136677413876766675-223666546778
Q gi|254780137|r 324 GRSDFSNQVNNVLCFPYIFRGALDCGATAITEEMKVAAARAMAVLVRDVPPDVVFDNFAKESPVFGP-NYLIPSPFDPNL 402 (779)
Q Consensus 324 Grs~~pnQ~NN~l~FPgif~Gal~~~A~~Itd~M~~aAa~alA~la~~~~~~~~~~~~~~~~~~~g~-~yiiP~~fd~r~ 402 (779)
...|+... |=+.-++. +..++.+-.++ .|.++..-..+ -+..+ +.++=+.+---+
T Consensus 251 ----~~~~~~~~----Gel~~~~~--~g~~~~~~~~~---eLgei~~G~~~-----------gR~~~~eitvf~s~G~ai 306 (330)
T PRK08291 251 ----RLSQTRRL----GELHHAIA--AGLVAADAVFP---ELGQVIAGRRP-----------GRTSDDDITICDLTGTGV 306 (330)
T ss_pred ----CHHHHHHC----CHHHHHHH--CCCCCCCCCCC---HHHHHHCCCCC-----------CCCCCCCEEEEECCCHHH
T ss_conf ----88998764----80887997--59998022313---19999659998-----------879998889997988499
Q ss_pred H-HHHHHHHHHHHHHCCCCCC
Q ss_conf 6-7988889998742132235
Q gi|254780137|r 403 I-SYIAPAVAKAAEEAGVASS 422 (779)
Q Consensus 403 ~-~~va~AVa~aA~~sGvAr~ 422 (779)
- ..+|..|-+.|.+.|+-+.
T Consensus 307 ~D~a~A~~vy~~A~~~GlGt~ 327 (330)
T PRK08291 307 QDTAIATLALARARAAGAGTI 327 (330)
T ss_pred HHHHHHHHHHHHHHHCCCCCC
T ss_conf 999999999999997399844
No 164
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=89.74 E-value=1.1 Score=23.79 Aligned_cols=42 Identities=33% Similarity=0.617 Sum_probs=33.3
Q ss_pred HHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECC----CEEECCCC
Q ss_conf 2411787425425678999999819885758999559----60307873
Q gi|254780137|r 201 SDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLE----GLVYEGRE 245 (779)
Q Consensus 201 ~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~----Gli~~~r~ 245 (779)
...||-+.|+|-||+++|..|..+|. .+.++|+. |++.-+=+
T Consensus 309 ~gkKVAVIGsGPAGLaaA~~Lar~G~---~VTVfE~~~~~GGlL~yGIP 354 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGV---QVDVFDRHPEIGGMLTFGIP 354 (639)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC---CEEEEECCCCCCCEEEECCC
T ss_conf 89989998975899999999997599---06999368888986853587
No 165
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=89.64 E-value=0.19 Score=28.95 Aligned_cols=92 Identities=23% Similarity=0.335 Sum_probs=62.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHH------HHCCCCCCHHHH-CCCCCEEE
Q ss_conf 11787425425678999999819885758999559603078733266788977------450889888886-05883786
Q gi|254780137|r 203 IKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVY------AQKSGPKPLSET-MNNADVFL 275 (779)
Q Consensus 203 ~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~------a~~~~~~~l~ea-~~~adv~i 275 (779)
.||++.|||.=|...|++|...+. ++.++|++- +.+......+ ..-++..+|.+| ++.||+||
T Consensus 1 M~IiI~GaG~vG~~La~~Ls~e~~---dV~vID~d~-------~~~~~~~~~lDv~~i~Gd~~~~~~L~~Agi~~ad~~I 70 (455)
T PRK09496 1 MKIIILGAGQVGGTLAERLVGENN---DVTVIDTDE-------ERLRRLQDRLDVRTVVGNGSHPDVLREAGAEDADMLI 70 (455)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC---CEEEEECCH-------HHHHHHHHHCCEEEEEECCCCHHHHHHCCCCCCCEEE
T ss_conf 979999988899999999986899---799998999-------9999988625868999668999999965998699999
Q ss_pred ECCCC---CCCCHHHHHHCCCC-CEEEEECCCC
Q ss_conf 25788---77898899721899-7799917872
Q gi|254780137|r 276 GLSVA---GALDPAILKFMAEK-PLIMVLANPN 304 (779)
Q Consensus 276 G~S~~---g~~t~e~v~~M~~~-PiIfaLsNP~ 304 (779)
.++.. +.++--+-+.|+.- ..|==..||.
T Consensus 71 AvT~~De~Nli~~~lAk~l~g~~~tIaRv~n~e 103 (455)
T PRK09496 71 AVTDSDETNMVACQIAKSLFGTPTKIARIRNPE 103 (455)
T ss_pred EECCCHHHHHHHHHHHHHHCCCCCEEEEECCHH
T ss_conf 957971899999999998669982499974777
No 166
>PRK07660 consensus
Probab=89.40 E-value=1.6 Score=22.66 Aligned_cols=33 Identities=30% Similarity=0.391 Sum_probs=29.2
Q ss_pred HCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf 411787425425678999999819885758999559
Q gi|254780137|r 202 DIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLE 237 (779)
Q Consensus 202 ~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~ 237 (779)
=.||.+.|||.=|.+||-++...|. +++++|..
T Consensus 3 Ik~VaViGaG~MG~gIA~~~a~~G~---~V~l~D~~ 35 (283)
T PRK07660 3 VQKIVVIGAGQMGSGIAQVCAMAGY---DVKVQDLK 35 (283)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC---CEEEEECC
T ss_conf 7889998969899999999996698---18999798
No 167
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=89.30 E-value=1.6 Score=22.61 Aligned_cols=109 Identities=17% Similarity=0.284 Sum_probs=70.8
Q ss_pred HHHHHHHHHHCCCCCC---CCCCCHHHHHHHHHHHHHHHHCCCHHHCEEEEECCCHHHHHHH--HHHHHCCCCCCCEEEE
Q ss_conf 9999999871894216---8772189999999999999709882241178742542567899--9999819885758999
Q gi|254780137|r 160 EVERILSQKLKIPFLH---DDQHGTAVTVTAATLNGMKLVGKKFSDIKIVTLGAGAAALACL--NLLVTMGVRRENIWVY 234 (779)
Q Consensus 160 ~i~~~l~~~~~ipvf~---DD~qGTa~v~lA~llnAl~~~gk~l~~~~iv~~GaGaAg~~~a--~ll~~~g~~~~~i~~~ 234 (779)
...+.+.+..++||.| |..|= .=+||-++.-.+-.|++++..+|++.|-+--+++-. .+...+|. ++.++
T Consensus 113 ~~~~~~a~~~~vPVINg~~~~~HP--tQ~LaDl~Ti~E~~~~~l~gl~ia~vGD~~nnv~~S~~~~~~~lG~---~v~i~ 187 (334)
T PRK01713 113 SIVNELAKYAGVPVFNGLTDEFHP--TQMLADVLTMIEHCEKPLSEISYVYIGDARNNMGNSLLLIGAKLGM---DVRIC 187 (334)
T ss_pred HHHHHHHHHCCCCEEECCCCCCCH--HHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCC---EEEEE
T ss_conf 899999986599889389787775--8999889999998416546749999389754188999999997799---79998
Q ss_pred ECCCEEECCCCCCCCHHHHHHHHCCCC-----CCHHHHCCCCCEEEE
Q ss_conf 559603078733266788977450889-----888886058837862
Q gi|254780137|r 235 DLEGLVYEGREKKFDKWKSVYAQKSGP-----KPLSETMNNADVFLG 276 (779)
Q Consensus 235 D~~Gli~~~r~~~~~~~~~~~a~~~~~-----~~l~ea~~~adv~iG 276 (779)
--+|+.-+. . .-+..+.+++..+. .++.++++++||+..
T Consensus 188 ~P~~~~p~~--~-~~~~~~~~~~~~g~~i~~~~d~~~a~~~aDvvyt 231 (334)
T PRK01713 188 APKALLPED--S-LVEMCEKFAKESGARITVTDDIDTAVKGVDFVHT 231 (334)
T ss_pred CCCCCCCCH--H-HHHHHHHHHHHCCCEEEEEECHHHHHCCCCEEEE
T ss_conf 897658788--9-9999999999719908996078888567868987
No 168
>pfam07992 Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.
Probab=89.28 E-value=0.68 Score=25.17 Aligned_cols=34 Identities=29% Similarity=0.510 Sum_probs=29.0
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEE
Q ss_conf 1787425425678999999819885758999559603
Q gi|254780137|r 204 KIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLV 240 (779)
Q Consensus 204 ~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli 240 (779)
.|||.|+|.||+.+|..+...|. ++.++|+.+-.
T Consensus 1 DVvIIGgG~AGl~aA~~l~~~g~---~v~lid~~~~~ 34 (277)
T pfam07992 1 DVVIIGGGPAGLAAAIYLARLGL---KVALIEKEGGT 34 (277)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC---CEEEEECCCCC
T ss_conf 99999976999999999984999---79999379993
No 169
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=89.19 E-value=1.6 Score=22.56 Aligned_cols=119 Identities=18% Similarity=0.185 Sum_probs=69.1
Q ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHH--HHHHHCCC--CCCHHHHCCCCCEEEEC
Q ss_conf 11787425-425678999999819885758999559603078733266788--97745088--98888860588378625
Q gi|254780137|r 203 IKIVTLGA-GAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWK--SVYAQKSG--PKPLSETMNNADVFLGL 277 (779)
Q Consensus 203 ~~iv~~Ga-GaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~--~~~a~~~~--~~~l~ea~~~adv~iG~ 277 (779)
.||.+.|| |.=|..++-++...+.. ..+.++|.+--+-+-....++-.. ..+-..++ ..+..+.++++|+.+=+
T Consensus 1 mKV~IiGAaG~VG~~~a~~l~~~~~~-~el~LiD~~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~d~~~~~daDivVit 79 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVV-KEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDLSDVAGSDIVIIT 79 (309)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCC-CEEEEEECCCCCCCCCEEEHHHHCCCCCCCCCCEEEECCCHHHHCCCCEEEEC
T ss_conf 98999999976999999999837998-75999605564342311235545034336887679827988996899999987
Q ss_pred CC----CCCCCH--------HHHH----H---CCCCCEEEEECCCCCCCCHHHHHHHC---CCEEECCC
Q ss_conf 78----877898--------8997----2---18997799917872009988998518---98798058
Q gi|254780137|r 278 SV----AGALDP--------AILK----F---MAEKPLIMVLANPNPEAMPDEIKKVR---PDAMICTG 324 (779)
Q Consensus 278 S~----~g~~t~--------e~v~----~---M~~~PiIfaLsNP~pEi~p~~a~~~~---g~aivatG 324 (779)
.+ +|- |+ .+++ . .+++.|+.-.+||.--+++ .+.+.. ...++.||
T Consensus 80 AG~~rk~g~-tR~dLl~~Na~I~~~i~~~i~~~~p~~ivivvtNPvDv~t~-~~~k~sg~p~~rviG~g 146 (309)
T cd05294 80 AGVPRKEGM-SRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPVDVMTY-KALKESGFDKNRVFGLG 146 (309)
T ss_pred CCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHH-HHHHHCCCCHHCEEEEC
T ss_conf 898899599-87899998999999999876426998499976896577999-99996698820388712
No 170
>PRK08223 hypothetical protein; Validated
Probab=89.04 E-value=0.92 Score=24.29 Aligned_cols=41 Identities=15% Similarity=0.314 Sum_probs=35.3
Q ss_pred CCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEE
Q ss_conf 8822411787425425678999999819885758999559603
Q gi|254780137|r 198 KKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLV 240 (779)
Q Consensus 198 k~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli 240 (779)
++|.+.||.+.|+|.-|..++..|..+|+. +|.++|-+-+=
T Consensus 23 ~kL~~s~VlVvG~GGlGs~~a~~LAraGVG--~i~lvD~D~ve 63 (287)
T PRK08223 23 QRLRNSRVAIAGLGGVGGVHLLTLARLGIG--KFNIADFDVFE 63 (287)
T ss_pred HHHHCCCEEEECCCHHHHHHHHHHHHCCCC--EEEEEECCCCC
T ss_conf 998559689993675579999999982897--59997499846
No 171
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=88.98 E-value=0.89 Score=24.38 Aligned_cols=42 Identities=19% Similarity=0.278 Sum_probs=33.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCC
Q ss_conf 1178742542567899999981988575899955960307873
Q gi|254780137|r 203 IKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGRE 245 (779)
Q Consensus 203 ~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~ 245 (779)
-||||.|+|.||+.+|..+.+.+-. ..|.++++..-+.-.|.
T Consensus 2 ~kiVIIG~g~AG~~aA~~lrk~~~~-~eItvi~~e~~~~y~~~ 43 (438)
T PRK13512 2 PKIVVVGAVAGGATCASQIRRLDKE-SDIIIFEKDRDMSFANC 43 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCC-CCEEEEECCCCCCCCCC
T ss_conf 8099989849999999999943919-99999968998887623
No 172
>KOG0069 consensus
Probab=88.94 E-value=1.6 Score=22.58 Aligned_cols=139 Identities=17% Similarity=0.201 Sum_probs=82.5
Q ss_pred CCCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCCCCCCHHHHCCCCCEEEE
Q ss_conf 98822411787425425678999999819885758999559603078733266788977450889888886058837862
Q gi|254780137|r 197 GKKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKSGPKPLSETMNNADVFLG 276 (779)
Q Consensus 197 gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~~~~~l~ea~~~adv~iG 276 (779)
|-+++..||.++|+|+=|..+++.|..+|. +|....+... |. ...+..+++ .-++.|.+..+|+++-
T Consensus 157 g~~~~gK~vgilG~G~IG~~ia~rL~~Fg~---~i~y~~r~~~----~~---~~~~~~~~~---~~d~~~~~~~sD~ivv 223 (336)
T KOG0069 157 GYDLEGKTVGILGLGRIGKAIAKRLKPFGC---VILYHSRTQL----PP---EEAYEYYAE---FVDIEELLANSDVIVV 223 (336)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCC---EEEEECCCCC----CH---HHHHHHCCC---CCCHHHHHHHCCEEEE
T ss_conf 666567779996274788999996353266---2554113577----63---668874354---3678888732887999
Q ss_pred CC-----CCCCCCHHHHHHCCCCCEEEEECCCCCCCCHHHHHH-HCCCEEECCCCCC-----CCC----CCCHHHHHHHH
Q ss_conf 57-----887789889972189977999178720099889985-1898798058878-----877----43503455665
Q gi|254780137|r 277 LS-----VAGALDPAILKFMAEKPLIMVLANPNPEAMPDEIKK-VRPDAMICTGRSD-----FSN----QVNNVLCFPYI 341 (779)
Q Consensus 277 ~S-----~~g~~t~e~v~~M~~~PiIfaLsNP~pEi~p~~a~~-~~g~aivatGrs~-----~pn----Q~NN~l~FPgi 341 (779)
.. ..++|.++.+..|.+.-+|--.+-=. =|..++..+ ..-..|...|--= .++ -.-|+.+-|-|
T Consensus 224 ~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~-iide~~l~eaL~sG~i~~aGlDVf~~EP~~~~~l~~~dnvv~~PHi 302 (336)
T KOG0069 224 NCPLTKETRHLINKKFIEKMKDGAVLVNTARGA-IIDEEALVEALKSGKIAGAGLDVFEPEPPVDHPLLTLDNVVILPHI 302 (336)
T ss_pred ECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC-CCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCCEEEECCC
T ss_conf 268977888776099998647976999646424-0259999978753985322465467789988201023660672312
Q ss_pred HHHHHHCC
Q ss_conf 45675137
Q gi|254780137|r 342 FRGALDCG 349 (779)
Q Consensus 342 f~Gal~~~ 349 (779)
+-..++.+
T Consensus 303 gs~t~~t~ 310 (336)
T KOG0069 303 GSATLETR 310 (336)
T ss_pred CCCCHHHH
T ss_conf 55749999
No 173
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=88.93 E-value=1 Score=23.98 Aligned_cols=102 Identities=17% Similarity=0.220 Sum_probs=59.6
Q ss_pred CCCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCC-------CCCCCHHHHHHHHC----CC-----
Q ss_conf 988224117874254256789999998198857589995596030787-------33266788977450----88-----
Q gi|254780137|r 197 GKKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGR-------EKKFDKWKSVYAQK----SG----- 260 (779)
Q Consensus 197 gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r-------~~~~~~~~~~~a~~----~~----- 260 (779)
-++|.+.+|++.|+|.-|..++..|..+|+. +|.++|.+=+=..+. .+.+...|..-|+. .|
T Consensus 37 Q~kL~~a~VlvvG~GGLG~~~~~yLaaaGvG--~i~ivD~D~v~~sNL~RQil~~~~dvG~~K~~~a~~~l~~~Np~v~v 114 (392)
T PRK07878 37 QKRLKNARVLVIGAGGLGSPTLLYLAAAGVG--TIGIVEFDVVDESNLQRQIIHGQSDVGRSKAQSARDSIVEINPLVNV 114 (392)
T ss_pred HHHHHHCCEEEECCCHHHHHHHHHHHHCCCC--EEEEECCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 9999719789987875789999999982897--59998789967455772005684335870799999999987898531
Q ss_pred --------CCCHHHHCCCCCEEEECCCCCCCCHHHHHHC---CCCCEEEEEC
Q ss_conf --------9888886058837862578877898899721---8997799917
Q gi|254780137|r 261 --------PKPLSETMNNADVFLGLSVAGALDPAILKFM---AEKPLIMVLA 301 (779)
Q Consensus 261 --------~~~l~ea~~~adv~iG~S~~g~~t~e~v~~M---~~~PiIfaLs 301 (779)
..+..+.+++.|+.+-+|- +.-|+-.|-.- ...|.|++-.
T Consensus 115 ~~~~~~l~~~n~~~li~~~DvViD~tD-N~~tR~lindac~~~~~PlV~ga~ 165 (392)
T PRK07878 115 RLHEFRLEPSNAVDLFAQYDLILDGTD-NFATRYLVNDAAVLAGKPYVWGSI 165 (392)
T ss_pred EEHHHCCCHHHHHHHHCCCCEEEECCC-CHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 211313788898764317768986689-989999999999996998799760
No 174
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=88.82 E-value=1.7 Score=22.39 Aligned_cols=94 Identities=17% Similarity=0.335 Sum_probs=68.0
Q ss_pred HHCCCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCCCCCCHHHHCCCCCEE
Q ss_conf 70988224117874254256789999998198857589995596030787332667889774508898888860588378
Q gi|254780137|r 195 LVGKKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKSGPKPLSETMNNADVF 274 (779)
Q Consensus 195 ~~gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~~~~~l~ea~~~adv~ 274 (779)
..|+.+...++-+.|.|.-|-.+++++..+|+ +++..|.. .. ...+ + .....+|.|.++.+|++
T Consensus 139 ~~g~~l~gktvGIiG~G~IG~~va~~~~~fg~---~Vi~yD~~----~~--~~~~-----~--~~~~~sleell~~sDiI 202 (330)
T PRK12480 139 IMSKPVKNMTVAIIGTGRIGAATAKIYAGFGA---TITAYDAY----PN--KDLD-----F--LTYKDSVKEAIKDADII 202 (330)
T ss_pred CCCCCCCCCEEEEECCCHHHHHHHHHHHHCCC---EEEEECCC----CC--CCCC-----C--CEECCCHHHHHHHCCEE
T ss_conf 57752358689996758899999999875699---89998998----64--2212-----1--32327899998759999
Q ss_pred EE-CC----CCCCCCHHHHHHCCCCCEEEEECCCC
Q ss_conf 62-57----88778988997218997799917872
Q gi|254780137|r 275 LG-LS----VAGALDPAILKFMAEKPLIMVLANPN 304 (779)
Q Consensus 275 iG-~S----~~g~~t~e~v~~M~~~PiIfaLsNP~ 304 (779)
.- +. ..+.+.++.++.|-+.+++-=.|--.
T Consensus 203 slh~Plt~~T~~lIn~~~l~~MK~~ailINtaRG~ 237 (330)
T PRK12480 203 SLHVPANKESYHLFDKAMFDHVKKGAILVNAARGA 237 (330)
T ss_pred EECCCCCHHHHCCHHHHHHHHCCCCCEEEECCCCC
T ss_conf 97376853312004899997579997699727863
No 175
>PRK07411 hypothetical protein; Validated
Probab=88.63 E-value=1.7 Score=22.49 Aligned_cols=131 Identities=18% Similarity=0.162 Sum_probs=76.4
Q ss_pred EHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHCEEEEECCCHHHHHHHHHHHHCCCCC
Q ss_conf 22206480157999999987189421687721899999999999997098822411787425425678999999819885
Q gi|254780137|r 149 NLEDIKAPECFEVERILSQKLKIPFLHDDQHGTAVTVTAATLNGMKLVGKKFSDIKIVTLGAGAAALACLNLLVTMGVRR 228 (779)
Q Consensus 149 ~lEDi~~p~~f~i~~~l~~~~~ipvf~DD~qGTa~v~lA~llnAl~~~gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~ 228 (779)
|+||..=++- ++ +||...+-.|-|.-. --++|.+.+|++.|||.-|.-++..|..+|+.
T Consensus 5 ~~~~~~L~~~-e~-~Ry~Rqi~l~~~G~~------------------gQ~~L~~a~VlvvG~GGLG~p~~~yLaaaGvG- 63 (390)
T PRK07411 5 NLDQIQLSKD-EY-ERYSRHLILPEVGLE------------------GQKRLKAASVLCIGTGGLGSPLLLYLAAAGIG- 63 (390)
T ss_pred CCCCCCCCHH-HH-HHHHHEECCCCCCHH------------------HHHHHHHCCEEEECCCHHHHHHHHHHHHCCCC-
T ss_conf 8344768999-99-886620043005999------------------99999749789988872379999999983897-
Q ss_pred CCEEEEECCCEEECC--C-----CCCCCHHHHHHHHC----CC-------------CCCHHHHCCCCCEEEECCCCCCCC
Q ss_conf 758999559603078--7-----33266788977450----88-------------988888605883786257887789
Q gi|254780137|r 229 ENIWVYDLEGLVYEG--R-----EKKFDKWKSVYAQK----SG-------------PKPLSETMNNADVFLGLSVAGALD 284 (779)
Q Consensus 229 ~~i~~~D~~Gli~~~--r-----~~~~~~~~~~~a~~----~~-------------~~~l~ea~~~adv~iG~S~~g~~t 284 (779)
+|.++|-+=+=..+ | .+.....|..-|+. .| .....+.+++.|+.+-+|- +.-|
T Consensus 64 -~i~ivD~D~ve~sNL~RQ~l~~~~~vG~~K~~~a~~~l~~lnp~~~i~~~~~~l~~~na~~li~~~DvvvD~tD-Nf~t 141 (390)
T PRK07411 64 -RIGIVDFDIVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLYETRLSSENALDILAPYDVVVDGTD-NFPT 141 (390)
T ss_pred -EEEEEECCCCCCCCCCCCCCCCHHCCCCCHHHHHHHHHHHHCCCCCCEEHHHHCCHHHHHHHHCCCCEEEECCC-CHHH
T ss_conf -59997489946234785436662007971899999999986898642103432555248874228868996788-8899
Q ss_pred HHHHHHC---CCCCEEEEECC
Q ss_conf 8899721---89977999178
Q gi|254780137|r 285 PAILKFM---AEKPLIMVLAN 302 (779)
Q Consensus 285 ~e~v~~M---~~~PiIfaLsN 302 (779)
+-.|-.. ...|.|++-..
T Consensus 142 Rylindac~~~~~PlV~ga~~ 162 (390)
T PRK07411 142 RYLVNDACVLLNKPNVYGSIF 162 (390)
T ss_pred HHHHHHHHHHHCCCEEEEECC
T ss_conf 999899999969987997647
No 176
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=88.62 E-value=1.8 Score=22.30 Aligned_cols=95 Identities=15% Similarity=0.125 Sum_probs=55.6
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEEC---------CCEEECCCCCCCCHHHHHHHHCCCCCCHHHHCCCCCE
Q ss_conf 1178742542567899999981988575899955---------9603078733266788977450889888886058837
Q gi|254780137|r 203 IKIVTLGAGAAALACLNLLVTMGVRRENIWVYDL---------EGLVYEGREKKFDKWKSVYAQKSGPKPLSETMNNADV 273 (779)
Q Consensus 203 ~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~---------~Gli~~~r~~~~~~~~~~~a~~~~~~~l~ea~~~adv 273 (779)
.||.|.|||+=|.-++-.|...|. +++++++ +|+...+........+ .......+..+.....|+
T Consensus 3 mkI~IiGaGAvG~~~a~~L~~aG~---~V~lv~r~~~~~~i~~~Gl~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~D~ 76 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGA---DVTLIGRARIGDEIRAHGLRLTDYRGRDVRVP---PDAIAFSTDPAALATADL 76 (341)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC---CEEEEECHHHHHHHHHCCCEEECCCCCEEEEC---CCEEEECCCHHHCCCCCE
T ss_conf 779998967999999999985899---87999567899999967909963899768963---661561488656589998
Q ss_pred EEECCCCCCCCHHHHHHC----CCCCEEEEECCCC
Q ss_conf 862578877898899721----8997799917872
Q gi|254780137|r 274 FLGLSVAGALDPAILKFM----AEKPLIMVLANPN 304 (779)
Q Consensus 274 ~iG~S~~g~~t~e~v~~M----~~~PiIfaLsNP~ 304 (779)
+|-+... -=+++.++.+ .++.+|+.|-|=-
T Consensus 77 viv~vKa-~~~~~a~~~l~~~l~~~t~il~lQNGl 110 (341)
T PRK08229 77 VLVTVKS-AATADAAAALAGHARPGAVVVSFQNGV 110 (341)
T ss_pred EEEEECC-CCHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 9997075-788999999986438996899950477
No 177
>PRK06823 ornithine cyclodeaminase; Validated
Probab=88.55 E-value=1.8 Score=22.27 Aligned_cols=141 Identities=20% Similarity=0.257 Sum_probs=87.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHH
Q ss_conf 16877218999999999999970988224117874254256789999998198857589995596030787332667889
Q gi|254780137|r 174 LHDDQHGTAVTVTAATLNGMKLVGKKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKS 253 (779)
Q Consensus 174 f~DD~qGTa~v~lA~llnAl~~~gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~ 253 (779)
++|.-.=|+.=+.|+=--|.|...++ ...++.++|+|.=+-.-.+.+.... .-+++++.|+. .+....+..
T Consensus 101 l~d~~~lT~~RTaAasalAa~~LA~~-da~~l~iiGtG~QA~~~l~a~~~v~-~i~~v~v~~r~-------~~~~~~f~~ 171 (315)
T PRK06823 101 LLDEGWLTALRTALAGRIVARLLAPQ-HVKAIGIVGTGIQARMQLMYLKNVT-DCRQLWVWGRS-------ETALEEYRQ 171 (315)
T ss_pred ECCCCHHHHHHHHHHHHHHHHHCCCC-CCCEEEEECCHHHHHHHHHHHHHHC-CCEEEEEECCC-------HHHHHHHHH
T ss_conf 83773788888999999999971789-9856999771899999999998718-71099994699-------799999999
Q ss_pred HHHHCCC-----CCCHHHHCCCCCEEEECC--CCCCCCHHHHHHCCCCCEEEEECCCCC---CCCHHHHHHHCCCEEECC
Q ss_conf 7745088-----988888605883786257--887789889972189977999178720---099889985189879805
Q gi|254780137|r 254 VYAQKSG-----PKPLSETMNNADVFLGLS--VAGALDPAILKFMAEKPLIMVLANPNP---EAMPDEIKKVRPDAMICT 323 (779)
Q Consensus 254 ~~a~~~~-----~~~l~ea~~~adv~iG~S--~~g~~t~e~v~~M~~~PiIfaLsNP~p---Ei~p~~a~~~~g~aivat 323 (779)
+ .+..+ ..+.+|++.++||.+.++ ..-+|..+|++ +..-|.+..--+| |+.++... +.+.+|.
T Consensus 172 ~-~~~~~~~v~~~~~~~eav~~ADIIvtaT~s~~Pv~~~~~lk---pG~hi~~iGs~~p~~~Eld~~~l~--~a~~vvv- 244 (315)
T PRK06823 172 Y-AQALGFAVNTTLDAAEVAHAANLIVTTTPSREPLLQAEDIQ---PGTHITAVGADSPGKQELDAELVA--RADKILV- 244 (315)
T ss_pred H-HHHCCCCEEEECCHHHHHHHCCEEEEEECCCCCCCCCCCCC---CCCEEEECCCCCCCCCCCCHHHHH--CCCEEEE-
T ss_conf 9-98619907994899999742774798878999641655578---996798427999411004999991--4989998-
Q ss_pred CCCCCCCCCC
Q ss_conf 8878877435
Q gi|254780137|r 324 GRSDFSNQVN 333 (779)
Q Consensus 324 Grs~~pnQ~N 333 (779)
|...|+.
T Consensus 245 ---D~~~~~~ 251 (315)
T PRK06823 245 ---DSIAQCT 251 (315)
T ss_pred ---CCHHHHH
T ss_conf ---8779987
No 178
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=88.43 E-value=0.78 Score=24.78 Aligned_cols=36 Identities=33% Similarity=0.416 Sum_probs=31.6
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEE
Q ss_conf 17874254256789999998198857589995596030
Q gi|254780137|r 204 KIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVY 241 (779)
Q Consensus 204 ~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~ 241 (779)
|+++.|||+=|..+++.|...|+. +|.++|+.-+-+
T Consensus 1 kvLllGaGtLGc~var~L~~~GV~--~it~VD~~~Vs~ 36 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVR--HITFVDSGKVSY 36 (307)
T ss_pred CEEEECCCCCCHHHHHHHHHHCCC--EEEEEECCEEEC
T ss_conf 979985775206999999983698--589984998855
No 179
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.43 E-value=0.82 Score=24.62 Aligned_cols=87 Identities=16% Similarity=0.282 Sum_probs=50.3
Q ss_pred CHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCC--CCCC-HHHHCCCCCEEE
Q ss_conf 8224117874254256789999998198857589995596030787332667889774508--8988-888605883786
Q gi|254780137|r 199 KFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKS--GPKP-LSETMNNADVFL 275 (779)
Q Consensus 199 ~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~--~~~~-l~ea~~~adv~i 275 (779)
++...||+|+|.|-.|++.+++|.+.|. ++++.|.+- . ...++ .....- ..+. -.+.+.++|+++
T Consensus 3 d~~~k~v~V~GlG~sG~s~~~~L~~~G~---~v~~~D~~~----~-~~~~~----~l~~~~~~~~g~~~~~~~~~~d~vV 70 (438)
T PRK03806 3 DYQGKNVVIIGLGLTGLSCVDFFLARGV---TPRVMDTRM----T-PPGLD----KLPENVERHTGSLNDEWLLAADLIV 70 (438)
T ss_pred CCCCCEEEEEEECHHHHHHHHHHHHCCC---EEEEEECCC----C-CHHHH----HHHCCCCEEECCCCHHHHCCCCEEE
T ss_conf 7789989999457888999999997899---699998999----9-00578----8645884665777966806799999
Q ss_pred ECCCCCCCCHHHHHHCCC-CCEE
Q ss_conf 257887789889972189-9779
Q gi|254780137|r 276 GLSVAGALDPAILKFMAE-KPLI 297 (779)
Q Consensus 276 G~S~~g~~t~e~v~~M~~-~PiI 297 (779)
-..+=..-.+++.+.-.. -||+
T Consensus 71 ~SPGI~~~~p~~~~a~~~~i~i~ 93 (438)
T PRK03806 71 ASPGIALAHPSLSAAADAGVEIV 93 (438)
T ss_pred ECCCCCCCCHHHHHHHHCCCCEE
T ss_conf 89978998989999998799477
No 180
>PRK07208 hypothetical protein; Provisional
Probab=88.37 E-value=0.86 Score=24.48 Aligned_cols=34 Identities=26% Similarity=0.425 Sum_probs=29.1
Q ss_pred HHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf 2411787425425678999999819885758999559
Q gi|254780137|r 201 SDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLE 237 (779)
Q Consensus 201 ~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~ 237 (779)
+..||+|.|||-+|+++|..|...|. ++.++++.
T Consensus 2 ~~kkv~IiGAG~~GL~aA~~L~~~g~---~v~vlEk~ 35 (474)
T PRK07208 2 EKKSVVIIGAGPAGLTAAYELVKRGY---PVTILEAD 35 (474)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC---CEEEEECC
T ss_conf 98759998976899999999986899---75999789
No 181
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=88.07 E-value=1.5 Score=22.86 Aligned_cols=32 Identities=13% Similarity=0.276 Sum_probs=17.4
Q ss_pred CCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 899729999702557888977899999999998737
Q gi|254780137|r 641 GMRPKVSVLFHSNSGSHCIKSSLKMRDSFEKICELS 676 (779)
Q Consensus 641 GiePkVAlLS~SnfGs~~~~s~~kvr~A~eil~~~~ 676 (779)
.++||+|+.|....-.=.||.- +.++.++++.
T Consensus 229 ~v~Pk~AliS~G~~N~yghPh~----~Vl~rl~~~~ 260 (293)
T COG2333 229 AVKPKVALISSGRNNRYGHPHQ----EVLERLQKRG 260 (293)
T ss_pred HCCCCEEEEEEECCCCCCCCCH----HHHHHHHHCC
T ss_conf 4398479997523677899739----9999998629
No 182
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=87.81 E-value=1 Score=23.99 Aligned_cols=34 Identities=24% Similarity=0.370 Sum_probs=29.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCE
Q ss_conf 1178742542567899999981988575899955960
Q gi|254780137|r 203 IKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGL 239 (779)
Q Consensus 203 ~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gl 239 (779)
.||+|.|||-.|+++|-.|...|. ++.++|++..
T Consensus 1 m~VvIIGaGi~G~stA~~La~~G~---~V~vler~~~ 34 (416)
T PRK00711 1 MRVVVLGSGVVGVTSAWYLARAGH---EVTVIDRQPG 34 (416)
T ss_pred CEEEEECCHHHHHHHHHHHHHCCC---CEEEEECCCC
T ss_conf 979999944999999999996899---6899969999
No 183
>KOG1495 consensus
Probab=87.75 E-value=1.3 Score=23.31 Aligned_cols=124 Identities=19% Similarity=0.282 Sum_probs=70.6
Q ss_pred CCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCC-HHHHHHHHCCCCCC--HHHHCCCCCEE
Q ss_conf 8822411787425425678999999819885758999559603078733266-78897745088988--88860588378
Q gi|254780137|r 198 KKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFD-KWKSVYAQKSGPKP--LSETMNNADVF 274 (779)
Q Consensus 198 k~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~-~~~~~~a~~~~~~~--l~ea~~~adv~ 274 (779)
++.+..||.+.|+|.-|++|+-.+..-+.+ .++.++|-.-=-.++ +.|+ ++-..|-+.++-.. -..+-.+.++.
T Consensus 16 ~~~~~~KItVVG~G~VGmAca~siL~k~La-del~lvDv~~dklkG--E~MDLqH~s~f~~~~~V~~~~Dy~~sa~S~lv 92 (332)
T KOG1495 16 KEFKHNKITVVGVGQVGMACAISILLKGLA-DELVLVDVNEDKLKG--EMMDLQHGSAFLSTPNVVASKDYSVSANSKLV 92 (332)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHHHHH-HCEEEEECCCCHHHH--HHHHHCCCCCCCCCCCEEECCCCCCCCCCCEE
T ss_conf 345674489982464889999999975033-406988627203321--25400023300268836766763234798689
Q ss_pred EECCC----CCC-------CCHHHHHHC-------CCCCEEEEECCCCCCCCHHHHHHH--CCCEEECCC
Q ss_conf 62578----877-------898899721-------899779991787200998899851--898798058
Q gi|254780137|r 275 LGLSV----AGA-------LDPAILKFM-------AEKPLIMVLANPNPEAMPDEIKKV--RPDAMICTG 324 (779)
Q Consensus 275 iG~S~----~g~-------~t~e~v~~M-------~~~PiIfaLsNP~pEi~p~~a~~~--~g~aivatG 324 (779)
|=+.+ +|- -+-++.|.| .++.++.--|||.-=.++---+-+ --..++.+|
T Consensus 93 IiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPVDilTYv~wKLSgfP~nRViGsG 162 (332)
T KOG1495 93 IITAGARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPVDILTYVTWKLSGFPKNRVIGSG 162 (332)
T ss_pred EEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCEECCC
T ss_conf 9956777898717899999889999998788850488708999658037888888987189623355667
No 184
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.68 E-value=0.91 Score=24.31 Aligned_cols=36 Identities=31% Similarity=0.479 Sum_probs=31.9
Q ss_pred CHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf 822411787425425678999999819885758999559
Q gi|254780137|r 199 KFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLE 237 (779)
Q Consensus 199 ~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~ 237 (779)
++..+||++.|.|-.|++++++|...|. +++..|.+
T Consensus 6 ~~~~k~i~viGlG~sG~s~a~~L~~~G~---~V~~~D~~ 41 (450)
T PRK02472 6 TFQNKKVLVLGLAKSGYAAAKLLHKLGA---NVTVNDGK 41 (450)
T ss_pred CCCCCEEEEEEECHHHHHHHHHHHHCCC---EEEEEECC
T ss_conf 3589989999778999999999998869---89998488
No 185
>PRK07236 hypothetical protein; Provisional
Probab=87.67 E-value=1.1 Score=23.85 Aligned_cols=37 Identities=24% Similarity=0.347 Sum_probs=32.6
Q ss_pred CHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCC
Q ss_conf 8224117874254256789999998198857589995596
Q gi|254780137|r 199 KFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEG 238 (779)
Q Consensus 199 ~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~G 238 (779)
++.+.||+|.|||-+|+..|-.|...|. ++.++++..
T Consensus 3 ~~~~~kV~IVGaGiaGL~~A~~L~~~G~---~v~v~Er~~ 39 (386)
T PRK07236 3 HMSKPRAVVVGGSLGGLFAANLLRRAGW---DVDVFERSP 39 (386)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCC---CEEEECCCC
T ss_conf 8999968999936899999999985899---989986899
No 186
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.61 E-value=0.95 Score=24.20 Aligned_cols=118 Identities=17% Similarity=0.182 Sum_probs=62.8
Q ss_pred CCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCE
Q ss_conf 13557773499974736889898899999999999999818997299997025578889778999999999987379959
Q gi|254780137|r 601 SMCIVRDNFLFFTDTHVSAEPSAMEIADSTILASQAICSLGMRPKVSVLFHSNSGSHCIKSSLKMRDSFEKICELSKNLE 680 (779)
Q Consensus 601 ~il~~~~~~lFiaDtaVNi~PtaEqLAdIa~~aa~~ar~lGiePkVAlLS~SnfGs~~~~s~~kvr~A~eil~~~~pd~~ 680 (779)
-.+-..+++.|+=|.-= .+|.+ +....+.| ++|-++- -|..+..+-...++... +-....
T Consensus 322 E~V~~~~Gv~~iNDSKa-TN~~a---------t~~Al~s~---~~i~lI~---GG~~K~~d~~~l~~~~~----~v~~~~ 381 (457)
T PRK01390 322 EQVGRRGKVLFVNDSKA-TNADA---------AAPALSSF---PNIYWIA---GGKPKAGGIESLAPFFP----RIAKAY 381 (457)
T ss_pred EEEEECCCCEEECCCCC-CCHHH---------HHHHHHCC---CCEEEEE---CCCCCCCCHHHHHHHHH----CCCEEE
T ss_conf 79754278338537767-89899---------99999737---8859994---50478889799999874----335999
Q ss_pred EECCCCHHHHCCHHHHHHCCCCCCCCCCCCEEECCCHHHH-HHHHHHHHHHCCCEEECHHHCCCCCCEEECCCCCCHHHH
Q ss_conf 9867304653298989630899877777777881891288-899999998659868714431458987987876389889
Q gi|254780137|r 681 VDAIVQEEVCLSEIFCDKDVPNTSSSQDAQLLVFPNIDSA-NIALEMAKSVTNGLHIGTLLLGAALPVHIVPSSVSVREI 759 (779)
Q Consensus 681 VDGemq~D~AL~~~ia~~K~p~S~laG~ANVLIfPnLeAa-NI~yKllq~lgga~aiGPIL~G~~kPV~ilsr~~Sv~dI 759 (779)
.-||-.-. +.+ .+.+..++.++.+++.+ ..+++..+..+ ....+.++|++|+.-|.
T Consensus 382 liG~~~~~------~~~------~l~~~~~~~~~~~l~~av~~a~~~a~~~~-----------~~gd~VLlSPacaSfD~ 438 (457)
T PRK01390 382 LIGEAAEE------FAA------TLGGAVPYEISGTLEAAVAAAARDAAASG-----------APEPVVLLSPACASFDQ 438 (457)
T ss_pred EECCCHHH------HHH------HHHCCCCEEECCCHHHHHHHHHHHHHHCC-----------CCCCEEEECCCCCCCCC
T ss_conf 98988899------999------87367987985989999999999998518-----------99998997962404014
Q ss_pred HH
Q ss_conf 99
Q gi|254780137|r 760 ID 761 (779)
Q Consensus 760 vn 761 (779)
..
T Consensus 439 f~ 440 (457)
T PRK01390 439 FK 440 (457)
T ss_pred CC
T ss_conf 26
No 187
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.53 E-value=2.1 Score=21.85 Aligned_cols=32 Identities=19% Similarity=0.323 Sum_probs=28.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf 11787425425678999999819885758999559
Q gi|254780137|r 203 IKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLE 237 (779)
Q Consensus 203 ~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~ 237 (779)
.||.+.|||.=|.+||-++...|. +++++|..
T Consensus 5 k~VaViGAG~MG~giA~~~a~~G~---~V~l~D~~ 36 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGY---DVLLNDVS 36 (292)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC---CEEEEECC
T ss_conf 889998966999999999996799---68999798
No 188
>KOG1370 consensus
Probab=87.43 E-value=2.1 Score=21.81 Aligned_cols=131 Identities=15% Similarity=0.178 Sum_probs=86.5
Q ss_pred CCCEEEHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHCEEEEECCCHHHHHHHHHHHH
Q ss_conf 84606222064801579999999871894216877218999999999999970988224117874254256789999998
Q gi|254780137|r 144 TFGGINLEDIKAPECFEVERILSQKLKIPFLHDDQHGTAVTVTAATLNGMKLVGKKFSDIKIVTLGAGAAALACLNLLVT 223 (779)
Q Consensus 144 ~fg~i~lEDi~~p~~f~i~~~l~~~~~ipvf~DD~qGTa~v~lA~llnAl~~~gk~l~~~~iv~~GaGaAg~~~a~ll~~ 223 (779)
.+..||.-|--...-|.-+--+|+.+ +-|+.- .+..-+.---.|+.|-|--|-||+.-|..
T Consensus 175 ~VPAiNVNDSVTKsKFDnLygcreSl----------------~Dgikr---aTDVM~aGKv~Vv~GYGdVGKgCaqaLkg 235 (434)
T KOG1370 175 KVPAINVNDSVTKSKFDNLYGCRESL----------------LDGIKR---ATDVMIAGKVAVVCGYGDVGKGCAQALKG 235 (434)
T ss_pred ECCEEECCCHHHHHHCCCCCCCHHHC----------------HHHHHH---HHHHEECCCEEEEECCCCCCHHHHHHHHC
T ss_conf 05455225313333223210221100----------------036655---44514525179996357645668999750
Q ss_pred CCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHC--CCCCCHHHHCCCCCEEEECCC-CCCCCHHHHHHCCCCCEEEEE
Q ss_conf 19885758999559603078733266788977450--889888886058837862578-877898899721899779991
Q gi|254780137|r 224 MGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQK--SGPKPLSETMNNADVFLGLSV-AGALDPAILKFMAEKPLIMVL 300 (779)
Q Consensus 224 ~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~--~~~~~l~ea~~~adv~iG~S~-~g~~t~e~v~~M~~~PiIfaL 300 (779)
.|. ++++.. .+|....-|-- -.-.++.|+++.+|||+.+++ .++++.+....|-.+.||--+
T Consensus 236 ~ga---~VivTE------------iDPI~ALQAaMeG~~V~tm~ea~~e~difVTtTGc~dii~~~H~~~mk~d~IvCN~ 300 (434)
T KOG1370 236 FGA---RVIVTE------------IDPICALQAAMEGYEVTTLEEAIREVDIFVTTTGCKDIITGEHFDQMKNDAIVCNI 300 (434)
T ss_pred CCC---EEEEEC------------CCCHHHHHHHHHCCEEEEHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCCCEEECC
T ss_conf 686---899960------------58068999875253754688764127789975687312339999747677378525
Q ss_pred CCCCCCCC
Q ss_conf 78720099
Q gi|254780137|r 301 ANPNPEAM 308 (779)
Q Consensus 301 sNP~pEi~ 308 (779)
..-+-||.
T Consensus 301 Ghfd~EiD 308 (434)
T KOG1370 301 GHFDTEID 308 (434)
T ss_pred CCCCCEEE
T ss_conf 65430110
No 189
>KOG2337 consensus
Probab=87.31 E-value=0.86 Score=24.48 Aligned_cols=42 Identities=31% Similarity=0.382 Sum_probs=35.7
Q ss_pred HHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECC
Q ss_conf 22411787425425678999999819885758999559603078
Q gi|254780137|r 200 FSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEG 243 (779)
Q Consensus 200 l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~ 243 (779)
+++.|...+|||+-|+++|+-|+.-|++ +|.++|.--+-|..
T Consensus 338 is~~KcLLLGAGTLGC~VAR~Ll~WGvR--hITFvDn~kVsySN 379 (669)
T KOG2337 338 ISQTKCLLLGAGTLGCNVARNLLGWGVR--HITFVDNGKVSYSN 379 (669)
T ss_pred HHCCEEEEECCCCCCHHHHHHHHHHCCC--EEEEEECCEEECCC
T ss_conf 4212368972764321888888751230--68987257142366
No 190
>TIGR01813 flavo_cyto_c flavocytochrome c; InterPro: IPR010960 This entry describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of Escherichia coli, mitochondria, and other well-characterised systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterised as a water-soluble periplasmic protein with four haem groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiration.; GO: 0000104 succinate dehydrogenase activity.
Probab=87.26 E-value=0.99 Score=24.05 Aligned_cols=275 Identities=15% Similarity=0.118 Sum_probs=140.8
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECC-------C---------CCCCCH-HHHHHHHCC-------C
Q ss_conf 787425425678999999819885758999559603078-------7---------332667-889774508-------8
Q gi|254780137|r 205 IVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEG-------R---------EKKFDK-WKSVYAQKS-------G 260 (779)
Q Consensus 205 iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~-------r---------~~~~~~-~~~~~a~~~-------~ 260 (779)
|||.|+|.||.+-+-...+.|+. +++++|+..++==. + ...... -+.+|-+++ +
T Consensus 2 vvvvGSG~AGlsAA~~A~~~G~~--~vv~LEK~~~iGGNS~~~ag~mn~a~T~~Q~~~gi~DdS~el~~~DtlkgG~g~n 79 (487)
T TIGR01813 2 VVVVGSGFAGLSAALSAKKAGLA--NVVVLEKMPVIGGNSAIAAGGMNAAGTDIQKKKGIEDDSPELFIKDTLKGGRGIN 79 (487)
T ss_pred EEEEECCHHHHHHHHHHHHCCCC--CEEEEECCCCCCHHHHHHHHCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHCCCCC
T ss_conf 68984276889999999864687--6378705752322689977210235684888548889967788998886327888
Q ss_pred CCC---------------HHHHCCCC-----CEEEECCCC------C--CCCHHHHHHCC----CCC------EEEEECC
Q ss_conf 988---------------88860588-----378625788------7--78988997218----997------7999178
Q gi|254780137|r 261 PKP---------------LSETMNNA-----DVFLGLSVA------G--ALDPAILKFMA----EKP------LIMVLAN 302 (779)
Q Consensus 261 ~~~---------------l~ea~~~a-----dv~iG~S~~------g--~~t~e~v~~M~----~~P------iIfaLsN 302 (779)
... |.|+-.+. .-+.|.|.+ | ..=.|+|..|. +.- |.+-+--
T Consensus 80 ~~~L~~~la~~s~~a~~wl~d~~~~~~l~~~~~~GGhs~~R~Hrp~gG~~~G~~iv~~L~~~a~~~gskDsnlv~~~~n~ 159 (487)
T TIGR01813 80 DPELVRTLAEESADAVDWLQDCGVGFRLDDLIQLGGHSVKRAHRPTGGAASGAEIVQKLSKKAKKEGSKDSNLVETRLNS 159 (487)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCEECCHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHCCC
T ss_conf 78999999987889988776422100011144327876464303478876784011777887743377432112210067
Q ss_pred CCCCC-----------------------CHHHHHH-HCCCEEECCCCCCC-CCCCCHHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf 72009-----------------------9889985-18987980588788-77435034556654567513730026789
Q gi|254780137|r 303 PNPEA-----------------------MPDEIKK-VRPDAMICTGRSDF-SNQVNNVLCFPYIFRGALDCGATAITEEM 357 (779)
Q Consensus 303 P~pEi-----------------------~p~~a~~-~~g~aivatGrs~~-pnQ~NN~l~FPgif~Gal~~~A~~Itd~M 357 (779)
-.-++ .-...++ ..-.+|+||| =|- -|.-==...=|-+---.-.+.+..=|=++
T Consensus 160 ~v~~li~d~~G~v~Gv~V~~~Y~F~~~~~~~~~~~~a~k~Vv~AtG-GFgy~N~~~~~~y~P~L~~~~~sTN~~GaTGDg 238 (487)
T TIGR01813 160 KVEDLIQDDQGQVVGVVVKGDYDFKDEKKGKKIYIKAAKAVVLATG-GFGYSNKELIKKYDPELKGKLDSTNQPGATGDG 238 (487)
T ss_pred CEEEEEECCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCEEEEEC-CCCHHHHHHHHHHCHHHCCCCCCCCCCCCHHHH
T ss_conf 2799998697118999962122588777787326755060689757-613333899986180116702346899635799
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHH--HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 99999999987203313667741387676667522366654677--8679888899987421322354322589999999
Q gi|254780137|r 358 KVAAARAMAVLVRDVPPDVVFDNFAKESPVFGPNYLIPSPFDPN--LISYIAPAVAKAAEEAGVASSPIEDYEVYRDSLK 435 (779)
Q Consensus 358 ~~aAa~alA~la~~~~~~~~~~~~~~~~~~~g~~yiiP~~fd~r--~~~~va~AVa~aA~~sGvAr~pi~d~~~Y~~~L~ 435 (779)
+..|-..=|.++. -+..+.+|- .-|.+=|++ --.-++.++.-.....|++=.| .+=+-.-++|.
T Consensus 239 ~~~a~~~GA~~vd------------m~~iQ~~Pt-~~~d~gDrennW~~~~~~~~r~~GF~~aI~~n~-~~G~RF~nEl~ 304 (487)
T TIGR01813 239 IKMAEKIGAALVD------------MDFIQAHPT-ASPDEGDRENNWGFLISEAVRGYGFAKAILINP-KTGERFVNELA 304 (487)
T ss_pred HHHHHHHCCCEEE------------CCEEECCCE-ECCCCCCCHHHHHHHHHHHHHHCCCCCEEEECC-CCCCCCCCCCC
T ss_conf 9999980887450------------404742614-426987510244656656675225522177326-78850003467
Q ss_pred HHHCCHHHHHHHHHHHHHC-CCC---CEEEEECCCCCHHHHHHHHHH-------HCCCEEEEEECCHHHHHHHHHH--CC
Q ss_conf 8620125688999999721-589---469982477404679999998-------5275089995598999999998--49
Q gi|254780137|r 436 RFSFPGRSLMKKIFSIAKG-TDS---KRILFSAGEDERVLRATQILI-------KENIARPVLIGSLLTIQDNIRR--HD 502 (779)
Q Consensus 436 ~rl~~s~~~mr~i~~~AK~-~~p---KRIVfaEgeD~rVLrAA~~~~-------eeGia~PILVG~~e~I~~~~~~--~g 502 (779)
.|=-.|..+++. +.|. ..| -=|+|.+. .....+....+. ..|++. ..+-|++++++ .+
T Consensus 305 ~Rd~~s~aI~a~---~~k~~gkPDn~A~l~~~~~-~~~~a~~~~~~~Gelkeft~~g~~~-----K~ds~e~LAK~yD~~ 375 (487)
T TIGR01813 305 TRDTVSDAILAQ---PGKSEGKPDNRAYLVFDED-VAKKAEEVENYLGELKEFTKDGVAY-----KGDSLEELAKQYDFN 375 (487)
T ss_pred CHHHHHHHHHHC---CCCCCCCCCCCCEEEECCH-HHHHHHHHHHHHHHHHHHHHCCCEE-----EECCHHHHHHHCCCC
T ss_conf 256899999838---8878878885506880857-8766677777654676663148554-----302489999861679
Q ss_pred CCC
Q ss_conf 876
Q gi|254780137|r 503 LQI 505 (779)
Q Consensus 503 L~l 505 (779)
++.
T Consensus 376 ~~~ 378 (487)
T TIGR01813 376 IPA 378 (487)
T ss_pred CCH
T ss_conf 898
No 191
>pfam02254 TrkA_N TrkA-N domain. This domain is found in a wide variety of proteins. These protein include potassium channels, phosphoesterases, and various other transporters. This domain binds to NAD.
Probab=87.20 E-value=0.43 Score=26.54 Aligned_cols=89 Identities=18% Similarity=0.267 Sum_probs=56.6
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHH-----HHHCCCCCCHHHH-CCCCCEEEECC
Q ss_conf 78742542567899999981988575899955960307873326678897-----7450889888886-05883786257
Q gi|254780137|r 205 IVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSV-----YAQKSGPKPLSET-MNNADVFLGLS 278 (779)
Q Consensus 205 iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~-----~a~~~~~~~l~ea-~~~adv~iG~S 278 (779)
|++.|.|.-|..+++.|.+.+ +++++|++- +..++.+.. +...++...|.++ +..++.++-++
T Consensus 1 viI~G~g~~G~~la~~L~~~~----~v~vId~d~-------~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vi~~~ 69 (115)
T pfam02254 1 IIIIGYGRVGRSLAEELREGG----PVVVIDKDP-------ERVEELREEGVPVVVGDATDEEVLEEAGIEDADAVVAAT 69 (115)
T ss_pred CEEECCCHHHHHHHHHHHHCC----CEEEEECCH-------HHHHHHHHCCCEEEEEECCCHHHHHHHCCCCCCEEEEEC
T ss_conf 999878889999999998089----999999987-------998778866986999956886678761920287999962
Q ss_pred C---CCCCCHHHHHHCCCCCEEEEEC-CCC
Q ss_conf 8---8778988997218997799917-872
Q gi|254780137|r 279 V---AGALDPAILKFMAEKPLIMVLA-NPN 304 (779)
Q Consensus 279 ~---~g~~t~e~v~~M~~~PiIfaLs-NP~ 304 (779)
. .+.+.-.+++.+++++-|++.+ ||.
T Consensus 70 ~~d~~n~~~~~~~r~~~~~~~iiar~~~~~ 99 (115)
T pfam02254 70 GDDEANILIVLLARELNPAKKIIARANDPE 99 (115)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEEECCHH
T ss_conf 984999999999999789980999987899
No 192
>PRK08328 hypothetical protein; Provisional
Probab=87.13 E-value=0.75 Score=24.88 Aligned_cols=39 Identities=21% Similarity=0.366 Sum_probs=35.1
Q ss_pred CCCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf 98822411787425425678999999819885758999559
Q gi|254780137|r 197 GKKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLE 237 (779)
Q Consensus 197 gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~ 237 (779)
-++|.+.||++.|+|.=|..++..|..+|+. +|.++|.+
T Consensus 22 Q~kL~~s~VlvvG~GGlGs~~~~~La~~GvG--~i~lvD~D 60 (230)
T PRK08328 22 QEKLKKAKVAVVGVGGLGSPVAYYLAAAGVG--TVLLIDEQ 60 (230)
T ss_pred HHHHHCCCEEEECCCHHHHHHHHHHHHCCCC--EEEEECCC
T ss_conf 9998559789988787899999999984898--68987487
No 193
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=87.03 E-value=0.88 Score=24.40 Aligned_cols=42 Identities=26% Similarity=0.352 Sum_probs=36.8
Q ss_pred CCCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEE
Q ss_conf 98822411787425425678999999819885758999559603
Q gi|254780137|r 197 GKKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLV 240 (779)
Q Consensus 197 gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli 240 (779)
-++|.+.+|.+.|+|.=|.-++..|..+|+. ++.++|.+-+-
T Consensus 14 Q~kL~~s~VlVvG~GGLG~~v~~~La~aGVg--~i~ivD~D~Ve 55 (198)
T cd01485 14 QNKLRSAKVLIIGAGALGAEIAKNLVLAGID--SITIVDHRLVS 55 (198)
T ss_pred HHHHHHCCEEEECCCHHHHHHHHHHHHCCCC--EEEEEECCCCC
T ss_conf 9999709899987788999999999974998--69999599635
No 194
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=86.91 E-value=2.2 Score=21.61 Aligned_cols=147 Identities=22% Similarity=0.283 Sum_probs=85.4
Q ss_pred HHHHHHHHCCCCCC--C--CCCCHHHHHHHHHHHHHHHHCCCHHHCEEEEECCCHHH---HHHHHHHHHCCCCCCCEEEE
Q ss_conf 99999871894216--8--77218999999999999970988224117874254256---78999999819885758999
Q gi|254780137|r 162 ERILSQKLKIPFLH--D--DQHGTAVTVTAATLNGMKLVGKKFSDIKIVTLGAGAAA---LACLNLLVTMGVRRENIWVY 234 (779)
Q Consensus 162 ~~~l~~~~~ipvf~--D--D~qGTa~v~lA~llnAl~~~gk~l~~~~iv~~GaGaAg---~~~a~ll~~~g~~~~~i~~~ 234 (779)
.+.+.+..+|||.| | .+|=|-+ |+-++.-.+.- .+++..||++.|-+.-+ -..+.++..+|. ++.+|
T Consensus 114 ~~~~a~~s~vPVINagdg~~eHPtQa--LaDl~Ti~e~~-g~l~glki~~vGD~~n~rv~~Sl~~~~~~~g~---~~~~~ 187 (304)
T PRK00856 114 ARLLAEKVNVPVINAGDGSHQHPTQA--LLDLLTIREEF-GRLEGLKVAIVGDIKHSRVARSNIQALTRLGA---EVRLI 187 (304)
T ss_pred HHHHHHHCCCCEEECCCCCCCCCHHH--HHHHHHHHHHH-CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC---EEEEE
T ss_conf 99999868998897999977684699--98799999863-87778769998478745679999999997698---69997
Q ss_pred ECCCEEECCCCCCCCHHHHHHHHCCCCCCHHHHCCCCCEEEECCC------------------CCCCCHHHHHHCCCCCE
Q ss_conf 559603078733266788977450889888886058837862578------------------87789889972189977
Q gi|254780137|r 235 DLEGLVYEGREKKFDKWKSVYAQKSGPKPLSETMNNADVFLGLSV------------------AGALDPAILKFMAEKPL 296 (779)
Q Consensus 235 D~~Gli~~~r~~~~~~~~~~~a~~~~~~~l~ea~~~adv~iG~S~------------------~g~~t~e~v~~M~~~Pi 296 (779)
--+++.-+ . ....-....++.++++++||+..+-. +=.+|+++++.+.++.|
T Consensus 188 ~P~~~~p~--------~--~~~~~~~~~d~~~av~~aDvvy~trvq~Er~~~~~~~~~~~~~~~y~v~~~~m~~a~~~ai 257 (304)
T PRK00856 188 APPTLLPE--------G--IELGVRVHTDLEEVIEEADVVMMLRVQKERMDGGLLPSYEEYHRQYGLTAERLALAKPDAI 257 (304)
T ss_pred CCCCCCCH--------H--HCCCEEEECCHHHHHCCCCEEEEEHHHHHHHCCCCCHHHHHHCCCEEECHHHHHCCCCCCE
T ss_conf 78533884--------4--4698399869999962698999855777761142103688725523458999960799989
Q ss_pred EEEECCC---CCCCCHHHHHHHCCCEEECCCCCCCCCCCCH
Q ss_conf 9991787---2009988998518987980588788774350
Q gi|254780137|r 297 IMVLANP---NPEAMPDEIKKVRPDAMICTGRSDFSNQVNN 334 (779)
Q Consensus 297 IfaLsNP---~pEi~p~~a~~~~g~aivatGrs~~pnQ~NN 334 (779)
++-.= | .-||+.+... . -+|-+=.|+.|
T Consensus 258 ~mHcL-Pa~Rg~Ei~~~V~d--~-------~~s~v~~QaeN 288 (304)
T PRK00856 258 VMHPG-PVNRGVEIASDVAD--G-------PQSRIFEQVTN 288 (304)
T ss_pred EECCC-CCCCCCEECHHHHC--C-------CCCHHHHHHHH
T ss_conf 98979-98788603787757--9-------84679999871
No 195
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.87 E-value=1.2 Score=23.49 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=31.6
Q ss_pred CHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf 822411787425425678999999819885758999559
Q gi|254780137|r 199 KFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLE 237 (779)
Q Consensus 199 ~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~ 237 (779)
++.+-+|++.|.|-.|++++++|.+.|. ++++.|.+
T Consensus 4 ~~~~k~vlV~GlG~sG~a~a~~L~~~G~---~V~~~D~~ 39 (501)
T PRK02006 4 DRQRPMVLVLGLGESGLAMARWCARHGC---RLRVADTR 39 (501)
T ss_pred CCCCCEEEEEEECHHHHHHHHHHHHCCC---EEEEEECC
T ss_conf 6689839998336889999999997898---49999899
No 196
>TIGR00518 alaDH alanine dehydrogenase; InterPro: IPR008141 Alanine dehydrogenases () and pyridine nucleotide transhydrogenase () have been shown to share regions of similarity . Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP^+ to NADPH with the concomitant oxidation of NADH to NAD^+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0000286 alanine dehydrogenase activity, 0006118 electron transport.
Probab=86.59 E-value=1.7 Score=22.49 Aligned_cols=95 Identities=15% Similarity=0.317 Sum_probs=69.4
Q ss_pred HHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHH-----CCCCCCHHHHCCCCCEE
Q ss_conf 2241178742542567899999981988575899955960307873326678897745-----08898888860588378
Q gi|254780137|r 200 FSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQ-----KSGPKPLSETMNNADVF 274 (779)
Q Consensus 200 l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~-----~~~~~~l~ea~~~adv~ 274 (779)
.+.-++++.|+|.+|...+++...+|. .+.++|.+ -+.+++....|.. ..+...+.++++.+|++
T Consensus 166 ~~~g~~~~~ggg~~g~~~~~~~~g~g~---~~~~~d~n-------~d~l~~l~~~f~~~~~~~~~~~~~~~~~~~~~dl~ 235 (372)
T TIGR00518 166 VEPGDVTILGGGVVGTNAAKMAVGLGA---DVTILDLN-------VDRLRQLDDLFGGRIDTRYSNAYELEDAVPEADLL 235 (372)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHCCCC---EEEEEECC-------HHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHE
T ss_conf 664526786076112102344313675---15676235-------46655545653120111014534554433221010
Q ss_pred EECC------CCCCCCHHHHHHCCCCCEEEEECCCC
Q ss_conf 6257------88778988997218997799917872
Q gi|254780137|r 275 LGLS------VAGALDPAILKFMAEKPLIMVLANPN 304 (779)
Q Consensus 275 iG~S------~~g~~t~e~v~~M~~~PiIfaLsNP~ 304 (779)
+|.- .|-.+++++++.|.+..++.-.+--.
T Consensus 236 ~~~~l~~g~~~p~l~~~~~~~~~~pg~~~~d~~~d~ 271 (372)
T TIGR00518 236 IGAVLIPGAKAPKLVSEELVEQMKPGAVLVDVAIDQ 271 (372)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEECC
T ss_conf 121120575453022167887517872578653136
No 197
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=86.52 E-value=0.98 Score=24.10 Aligned_cols=133 Identities=12% Similarity=0.142 Sum_probs=67.8
Q ss_pred CCCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCCCCC----CHHHHCC--C
Q ss_conf 988224117874254256789999998198857589995596030787332667889774508898----8888605--8
Q gi|254780137|r 197 GKKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKSGPK----PLSETMN--N 270 (779)
Q Consensus 197 gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~~~~----~l~ea~~--~ 270 (779)
-++|.+.||.+.|+|.-|.-+++.|..+|+. ++.++|.+-+-..+ ++.+ -.|..+.-.. ...+.++ +
T Consensus 16 Q~kL~~s~VlvvG~GGLG~~v~~~La~aGvg--~i~ivD~d~v~~sn----L~RQ-~l~~~~diG~~Ka~~a~~~l~~lN 88 (197)
T cd01492 16 QKRLRSARILLIGLKGLGAEIAKNLVLSGIG--SLTILDDRTVTEED----LGAQ-FLIPAEDLGQNRAEASLERLRALN 88 (197)
T ss_pred HHHHHCCCEEEECCCHHHHHHHHHHHHHCCC--EEEEEECCCCCHHH----CCCC-EECCCCCCCCCHHHHHHHHHHHHC
T ss_conf 9999609599988788999999999983798--69999899187777----3978-603233478885999999999738
Q ss_pred CCEEEECCCCCCCCHHHHHHCCC-CCEEEEECCCCCCCCHHHHHHHCCCEEECCCCCCCCCCCCHHHHHHHHH
Q ss_conf 83786257887789889972189-9779991787200998899851898798058878877435034556654
Q gi|254780137|r 271 ADVFLGLSVAGALDPAILKFMAE-KPLIMVLANPNPEAMPDEIKKVRPDAMICTGRSDFSNQVNNVLCFPYIF 342 (779)
Q Consensus 271 adv~iG~S~~g~~t~e~v~~M~~-~PiIfaLsNP~pEi~p~~a~~~~g~aivatGrs~~pnQ~NN~l~FPgif 342 (779)
++|-+-.. ...++++-.....+ +=||...-|......-.++....+.-+|..+..-+-+| +|+++|
T Consensus 89 p~v~i~~~-~~~~~~~~~~~i~~~D~Vvd~~dn~~~r~~iN~~c~~~~iplI~g~~~g~~G~-----vf~dv~ 155 (197)
T cd01492 89 PRVKVSVD-TDDISEKPEEFFSQFDVVVATELSRAELVKINELCRKLGVKFYATGVHGLFGF-----VFADLL 155 (197)
T ss_pred CCCEEEEE-ECCCCHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCEEE-----EECCCC
T ss_conf 99728987-04585768999828999999999999999999999981997899981375523-----676877
No 198
>PRK06932 glycerate dehydrogenase; Provisional
Probab=86.49 E-value=2.4 Score=21.47 Aligned_cols=123 Identities=13% Similarity=0.181 Sum_probs=80.3
Q ss_pred HHHHHHHCCCCCCCCCCCHHH---HHHHHHHHHHHHH------------------------CCCHHHCEEEEECCCHHHH
Q ss_conf 999987189421687721899---9999999999970------------------------9882241178742542567
Q gi|254780137|r 163 RILSQKLKIPFLHDDQHGTAV---TVTAATLNGMKLV------------------------GKKFSDIKIVTLGAGAAAL 215 (779)
Q Consensus 163 ~~l~~~~~ipvf~DD~qGTa~---v~lA~llnAl~~~------------------------gk~l~~~~iv~~GaGaAg~ 215 (779)
+.+++ .+|+|.|-=-..+-. -+++-+|+..|-. ++.|...++-+.|.|.=|-
T Consensus 82 ~aa~~-~gI~V~n~pg~~~~~VAE~~i~liL~l~r~i~~~~~~~~~~~W~~~~~~~~~~~~~~~L~gktvGIiG~G~IG~ 160 (314)
T PRK06932 82 VAAKE-LGITVKNVTGYSSTTVPEHVLGLIFALKHSLMGWYRDQLSAKWAECKQFCYFDYPITDVRGSTLGVFGKGCLGS 160 (314)
T ss_pred HHHHH-CCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEECCCEEEEECCCHHHH
T ss_conf 99974-99799938986727899999999999997799999999838643246643257754400386889976352888
Q ss_pred HHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCCCCCCHHHHCCCCCEEEE-C----CCCCCCCHHHHHH
Q ss_conf 8999999819885758999559603078733266788977450889888886058837862-5----7887789889972
Q gi|254780137|r 216 ACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKSGPKPLSETMNNADVFLG-L----SVAGALDPAILKF 290 (779)
Q Consensus 216 ~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~~~~~l~ea~~~adv~iG-~----S~~g~~t~e~v~~ 290 (779)
.+++++..+|+ +++..++++. .+.. ....++.|.++.+|++.= + +..+.++++.++.
T Consensus 161 ~va~~~~~fGm---~V~~~~~~~~---------~~~~------~~~~~l~ell~~sDiIslh~Plt~eT~~li~~~~l~~ 222 (314)
T PRK06932 161 EVGRLATALGM---KVLYAEHKGA---------TECR------EGYTPFEEVLKQADIVTLHCPLTESTQNLINAETLAL 222 (314)
T ss_pred HHHHHHHCCCC---EEEEECCCCC---------HHHC------CCCCCHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHC
T ss_conf 99999852898---8999787661---------2323------4657599996235836895113010233666999735
Q ss_pred CCCCCEEEEECCCC
Q ss_conf 18997799917872
Q gi|254780137|r 291 MAEKPLIMVLANPN 304 (779)
Q Consensus 291 M~~~PiIfaLsNP~ 304 (779)
|-+..++.=.|--.
T Consensus 223 MK~~a~lIN~aRG~ 236 (314)
T PRK06932 223 MKPTAFLINTGRGP 236 (314)
T ss_pred CCCCCEEEECCCCC
T ss_conf 78871999826755
No 199
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=86.47 E-value=0.92 Score=24.30 Aligned_cols=115 Identities=14% Similarity=0.181 Sum_probs=61.0
Q ss_pred CCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCCCCC-----CHHHHCC--C
Q ss_conf 88224117874254256789999998198857589995596030787332667889774508898-----8888605--8
Q gi|254780137|r 198 KKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKSGPK-----PLSETMN--N 270 (779)
Q Consensus 198 k~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~~~~-----~l~ea~~--~ 270 (779)
++|.+.+|+++|+|.=|.-+++.|...|+. ++.++|-+-+-.. ++|. +.++...+.+ .+.+.++ +
T Consensus 7 ~kl~~s~V~v~G~GGvGs~~a~~LarsGVG--~l~lvD~D~v~~S----NLnR--Q~~a~~~~iG~~K~~~~~~rl~~iN 78 (231)
T cd00755 7 EKLRNAHVAVVGLGGVGSWAAEALARSGVG--KLTLIDFDVVCVS----NLNR--QIHALLSTVGKPKVEVMAERIRDIN 78 (231)
T ss_pred HHHHCCCEEEECCCHHHHHHHHHHHHCCCC--EEEEEECCEECCC----CHHH--HHCCCHHHCCCCCHHHHHHHHHHHC
T ss_conf 998549789988863689999999980997--5999719990454----4443--3016563369972899999999879
Q ss_pred CCEEEECCCCCCCCHHHHHHCC-C--CCEEEEECCCCCCCCHHHHHHHCCCEEE
Q ss_conf 8378625788778988997218-9--9779991787200998899851898798
Q gi|254780137|r 271 ADVFLGLSVAGALDPAILKFMA-E--KPLIMVLANPNPEAMPDEIKKVRPDAMI 321 (779)
Q Consensus 271 adv~iG~S~~g~~t~e~v~~M~-~--~PiIfaLsNP~pEi~p~~a~~~~g~aiv 321 (779)
+++=+- ....-+++|-+...- . +=||=+.-|..+.+.-.++....+.-+|
T Consensus 79 P~~~v~-~~~~~~~~~n~~~ll~~~~D~VvDaiD~~~~K~~l~~~c~~~~iplI 131 (231)
T cd00755 79 PECEVD-AVEEFLTPDNSEDLLGGDPDFVVDAIDSIRAKVALIAYCRKRKIPVI 131 (231)
T ss_pred CCCEEE-EEHHHCCHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 998899-86251599899998454777785344248779999999998299089
No 200
>PRK06436 glycerate dehydrogenase; Provisional
Probab=86.46 E-value=2.4 Score=21.46 Aligned_cols=151 Identities=15% Similarity=0.160 Sum_probs=87.2
Q ss_pred CCCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCCCCCCHHHHCCCCCEEEE
Q ss_conf 98822411787425425678999999819885758999559603078733266788977450889888886058837862
Q gi|254780137|r 197 GKKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKSGPKPLSETMNNADVFLG 276 (779)
Q Consensus 197 gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~~~~~l~ea~~~adv~iG 276 (779)
++.|...++.+.|.|.=|-.+++++..+|+ +++.+|+...- +.. .....++.|.++.+|++.-
T Consensus 117 ~~~L~gktvGIiG~G~IG~~vA~~~~afg~---~V~~~~r~~~~-----~~~---------~~~~~~~~ell~~sDivsl 179 (303)
T PRK06436 117 TKLLYNKSLGILGYGGIGRRVALLAKAFGM---NIYAYTRSYVN-----DGI---------SSIYMEPEDIMKKSDFVLI 179 (303)
T ss_pred CCEECCCEEEEECCCHHHHHHHHHHHHCCC---EEEEECCCCCC-----CCC---------CEEECCHHHHHHHCCEEEE
T ss_conf 744118889998976569999999997798---89998985322-----457---------4552689999975999999
Q ss_pred C-C----CCCCCCHHHHHHCCCCCEEEEECCCCCCCCHHH-HHHH-CCCEEECCCC---CCCC----CCCCHHHHHHHHH
Q ss_conf 5-7----887789889972189977999178720099889-9851-8987980588---7887----7435034556654
Q gi|254780137|r 277 L-S----VAGALDPAILKFMAEKPLIMVLANPNPEAMPDE-IKKV-RPDAMICTGR---SDFS----NQVNNVLCFPYIF 342 (779)
Q Consensus 277 ~-S----~~g~~t~e~v~~M~~~PiIfaLsNP~pEi~p~~-a~~~-~g~aivatGr---s~~p----nQ~NN~l~FPgif 342 (779)
. . ..+.+.++.++.|-+..++.=.|--.= +.-+. ...- .|. +.+-|- ...| ++..|+++-|-|.
T Consensus 180 h~Plt~~T~~lI~~~~l~~MK~~a~lIN~aRG~i-Vde~aL~~aL~~g~-i~ga~lDV~~~EP~~~~~~l~NVilTPHiA 257 (303)
T PRK06436 180 SLPLTDETRGMINSKMLSLFRKGLAIINVARADV-VDKNDMLNFLRNHN-DKYYLSDVWWNEPIITETNPDNVILSPHVA 257 (303)
T ss_pred ECCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCE-ECHHHHHHHHHHCC-CEEEEECCCCCCCCCCCCCCCCEEECCCCC
T ss_conf 2578655677768999985699978999278654-68999999998199-659996799999899878999889999466
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 5675137300267899999999998720
Q gi|254780137|r 343 RGALDCGATAITEEMKVAAARAMAVLVR 370 (779)
Q Consensus 343 ~Gal~~~A~~Itd~M~~aAa~alA~la~ 370 (779)
-|. .....+.|...|++-|-.+..
T Consensus 258 g~~----t~e~~~~~~~~a~~Ni~~fl~ 281 (303)
T PRK06436 258 GGM----SGEIMQPAVALAFENIKNFFE 281 (303)
T ss_pred CCC----HHHHHHHHHHHHHHHHHHHHC
T ss_conf 457----999999999999999999987
No 201
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=86.42 E-value=1.7 Score=22.53 Aligned_cols=71 Identities=17% Similarity=0.149 Sum_probs=43.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCCCCCCHHHHCCCCCEEEECCCC
Q ss_conf 117874254256789999998198857589995596030787332667889774508898888860588378625788
Q gi|254780137|r 203 IKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKSGPKPLSETMNNADVFLGLSVA 280 (779)
Q Consensus 203 ~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~~~~~l~ea~~~adv~iG~S~~ 280 (779)
.||.|.|+|.=|-++++-+.+.+...++|++.|+. .+.....+..|....-..+-.++++.+|+++-+-.|
T Consensus 1 MkIgfIG~GnMg~Aii~Gl~~~~~~~~~i~v~~r~-------~~~~~~l~~~~~~v~~~~~n~~~~~~~dvi~LaVKP 71 (255)
T PRK06476 1 MRIGFIGTGAITEAMVTGLLSSPADVSEIIVSPRN-------AQIAARLAARFAKVRIAKDNQAVVDRSDVVFLAVRP 71 (255)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEECCC-------HHHHHHHHHHCCCEEEECCHHHHHHHCCEEEEEECH
T ss_conf 98999864699999999999788992508898989-------899999998769559857889998518878886178
No 202
>PRK07233 hypothetical protein; Provisional
Probab=86.40 E-value=1.2 Score=23.38 Aligned_cols=33 Identities=27% Similarity=0.447 Sum_probs=27.4
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCE
Q ss_conf 178742542567899999981988575899955960
Q gi|254780137|r 204 KIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGL 239 (779)
Q Consensus 204 ~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gl 239 (779)
||||.|||-+|+.+|..|...|. ++.+++++--
T Consensus 1 rVvVIGaG~aGLsaA~~L~~~G~---~V~VlEa~~~ 33 (430)
T PRK07233 1 KIAIIGGGIMGLAAAYRLAKAGH---EVTVFEADDQ 33 (430)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC---CEEEEECCCC
T ss_conf 98999977899999999983999---8899958998
No 203
>COG2390 DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]
Probab=86.31 E-value=2.4 Score=21.40 Aligned_cols=105 Identities=15% Similarity=0.190 Sum_probs=51.6
Q ss_pred CCCCHHHHHHHHHHHHHCCC----CCCCCCCCHHHHHHHHHHHHHHHHCCCHHHCEEEEECCCHHHHHHHHHHHHCCCCC
Q ss_conf 64801579999999871894----21687721899999999999997098822411787425425678999999819885
Q gi|254780137|r 153 IKAPECFEVERILSQKLKIP----FLHDDQHGTAVTVTAATLNGMKLVGKKFSDIKIVTLGAGAAALACLNLLVTMGVRR 228 (779)
Q Consensus 153 i~~p~~f~i~~~l~~~~~ip----vf~DD~qGTa~v~lA~llnAl~~~gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~ 228 (779)
-.-.+|+++|++|+++.++. |..|+..-..+..--|. .|-....+-+++-.++-.|-|..=.++++.+...- .
T Consensus 62 ~~~~~~~~Le~~L~~~fgL~~a~VVp~~~~~~~~~~~~lg~-aaA~~l~~~l~~gdvigV~wGrTv~a~~~~l~~~~--~ 138 (321)
T COG2390 62 SPVEGCLELEQQLKERFGLKEAIVVPSDSDADDSILRRLGR-AAAQYLESLLKPGDVIGVGWGRTLSAVVDNLPPAP--L 138 (321)
T ss_pred CCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCC--C
T ss_conf 98765399999999965997699974899985589999999-99999998577999999925579999998559676--6
Q ss_pred CCEEEEECCCEEE-CCCCCCCCHHHHHHHHCCC
Q ss_conf 7589995596030-7873326678897745088
Q gi|254780137|r 229 ENIWVYDLEGLVY-EGREKKFDKWKSVYAQKSG 260 (779)
Q Consensus 229 ~~i~~~D~~Gli~-~~r~~~~~~~~~~~a~~~~ 260 (779)
.++.++--.|=+. .+-...-+.....+|+..+
T Consensus 139 ~~~~vV~l~GG~~~~~~~~~~~~~~~~~A~k~~ 171 (321)
T COG2390 139 RDVKVVQLTGGVGHADGSYNANTIALRLAEKLG 171 (321)
T ss_pred CCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 883899888988877666678799999999849
No 204
>PRK06834 hypothetical protein; Provisional
Probab=86.21 E-value=1.3 Score=23.26 Aligned_cols=55 Identities=15% Similarity=0.145 Sum_probs=40.9
Q ss_pred HHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEE--CCCCCCCCHHHHHHHH
Q ss_conf 224117874254256789999998198857589995596030--7873326678897745
Q gi|254780137|r 200 FSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVY--EGREKKFDKWKSVYAQ 257 (779)
Q Consensus 200 l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~--~~r~~~~~~~~~~~a~ 257 (779)
|.|.-|+|.|||-+|+..|-+|...|+ ++.++|++--.. ..|...+++...+.-+
T Consensus 1 M~~~dVlIVGaGPvGL~lA~~La~~Gi---~v~viE~~~~~~~~~~RA~~l~~rt~eil~ 57 (488)
T PRK06834 1 MTEHAVVIAGGGPTGLMLAGELALAGV---DVAIVERRVDQELVGSRAGGLHARTLEVLD 57 (488)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCC---CEEEEECCCCCCCCCCCEEEECHHHHHHHH
T ss_conf 998989998938899999999997699---999996899987769848477899999999
No 205
>pfam03446 NAD_binding_2 NAD binding domain of 6-phosphogluconate dehydrogenase. The NAD binding domain of 6-phosphogluconate dehydrogenase adopts a Rossmann fold.
Probab=86.12 E-value=2.5 Score=21.34 Aligned_cols=100 Identities=18% Similarity=0.197 Sum_probs=66.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCCCCCCHHHHCCCCCEEEEC-CCC-
Q ss_conf 117874254256789999998198857589995596030787332667889774508898888860588378625-788-
Q gi|254780137|r 203 IKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKSGPKPLSETMNNADVFLGL-SVA- 280 (779)
Q Consensus 203 ~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~~~~~l~ea~~~adv~iG~-S~~- 280 (779)
.||-|.|.|.=|.++++-|.+.|. +++.+|+ +. +..++....-+ ....++.|+++.+|+++-+ +.+
T Consensus 2 ~~Ig~IGlG~MG~~ma~~L~~~g~---~v~v~d~----~~---~~~~~~~~~g~--~~~~s~~e~~~~~dvIi~~l~~~~ 69 (163)
T pfam03446 2 AKIGFIGLGVMGSPMALNLLKAGY---TVTVYNR----TP---EKVEELVAEGA--VAAASPAEAAASADVVITMVPAGA 69 (163)
T ss_pred CEEEEEEEHHHHHHHHHHHHHCCC---EEEEEEC----CH---HHHHHHHHCCC--EECCCHHHHHHCCCEEEEECCCHH
T ss_conf 889998367989999999997799---6999979----78---87799998399--553999999861999999258714
Q ss_pred ---CCCC--HHHHHHCCCCCEEEEECCCCCCCCHHHHHH
Q ss_conf ---7789--889972189977999178720099889985
Q gi|254780137|r 281 ---GALD--PAILKFMAEKPLIMVLANPNPEAMPDEIKK 314 (779)
Q Consensus 281 ---g~~t--~e~v~~M~~~PiIfaLsNP~pEi~p~~a~~ 314 (779)
.++. ..++..+.+..||.-+|+-.|+..-+.+.+
T Consensus 70 ~v~~V~~~~~gl~~~~~~g~iiid~sT~~p~~~~~~~~~ 108 (163)
T pfam03446 70 AVDAVIFGEDGLLPGLKPGDIIIDGSTISPDDTRRLAKE 108 (163)
T ss_pred HHHEEECCCCCHHHHCCCCCEEEECCCCCHHHHHHHHHH
T ss_conf 540220263133231358988986798999999999998
No 206
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=86.09 E-value=1.3 Score=23.26 Aligned_cols=42 Identities=43% Similarity=0.696 Sum_probs=32.2
Q ss_pred HHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECC----CEEECCCC
Q ss_conf 2411787425425678999999819885758999559----60307873
Q gi|254780137|r 201 SDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLE----GLVYEGRE 245 (779)
Q Consensus 201 ~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~----Gli~~~r~ 245 (779)
...||.+.|+|-||+++|..|..+|. .+.++|+. |++.-+=+
T Consensus 326 tGKkVAIIGsGPAGLsaA~~Lar~G~---~VTVFE~~~~~GGlL~yGIP 371 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLTRNGV---AVTVYDRHPEIGGLLTFGIP 371 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC---EEEEECCCCCCCCEEEECCC
T ss_conf 89989998977899999999997697---57995257778866752486
No 207
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=86.09 E-value=0.38 Score=26.95 Aligned_cols=70 Identities=20% Similarity=0.326 Sum_probs=48.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHH-------HHHHCCCCCCHHHH-CCCCCEE
Q ss_conf 117874254256789999998198857589995596030787332667889-------77450889888886-0588378
Q gi|254780137|r 203 IKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKS-------VYAQKSGPKPLSET-MNNADVF 274 (779)
Q Consensus 203 ~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~-------~~a~~~~~~~l~ea-~~~adv~ 274 (779)
.++++.|+|.-|..+|+.|.+.|- ++.++|++.-. .+++.. .....++...|.++ +..+|++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~---~Vv~Id~d~~~-------~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~v 70 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGH---NVVLIDRDEER-------VEEFLADELDTHVVIGDATDEDVLEEAGIDDADAV 70 (225)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC---EEEEEECCHHH-------HHHHHHHCCCEEEEEECCCCHHHHHHCCCCCCCEE
T ss_conf 989998985788999999987899---08999768899-------99863200044999926889899986798638999
Q ss_pred EECCCCCC
Q ss_conf 62578877
Q gi|254780137|r 275 LGLSVAGA 282 (779)
Q Consensus 275 iG~S~~g~ 282 (779)
+-+++.+.
T Consensus 71 va~t~~d~ 78 (225)
T COG0569 71 VAATGNDE 78 (225)
T ss_pred EEEECCCH
T ss_conf 99808867
No 208
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=86.02 E-value=2.3 Score=21.56 Aligned_cols=49 Identities=18% Similarity=0.129 Sum_probs=38.3
Q ss_pred HHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHH
Q ss_conf 2411787425425678999999819885758999559603078733266788
Q gi|254780137|r 201 SDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWK 252 (779)
Q Consensus 201 ~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~ 252 (779)
++.-|+|.|||-+|..+|-.|...|. ++.++|+.--..+.|...+.+.-
T Consensus 4 ~~~DV~IvGaGp~Gl~lAl~La~~G~---~v~lie~~~~~~d~Ra~al~~~s 52 (386)
T PRK07494 4 EHTDIAVSGGGPAGLAAAIALASAGA---SVALVAPAPPYADLRTTALLGPS 52 (386)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCC---CEEEEECCCCCCCCCEEEECHHH
T ss_conf 88868999906899999999987899---88999579988888679986899
No 209
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=85.68 E-value=2.6 Score=21.20 Aligned_cols=109 Identities=20% Similarity=0.292 Sum_probs=68.2
Q ss_pred HHHHHHHHHHCCCCCC---CCCCCHHHHHHHHHHHHHH-HHCCCHHHCEEEEECCCHHHHHHH--HHHHHCCCCCCCEEE
Q ss_conf 9999999871894216---8772189999999999999-709882241178742542567899--999981988575899
Q gi|254780137|r 160 EVERILSQKLKIPFLH---DDQHGTAVTVTAATLNGMK-LVGKKFSDIKIVTLGAGAAALACL--NLLVTMGVRRENIWV 233 (779)
Q Consensus 160 ~i~~~l~~~~~ipvf~---DD~qGTa~v~lA~llnAl~-~~gk~l~~~~iv~~GaGaAg~~~a--~ll~~~g~~~~~i~~ 233 (779)
...+.+.+..++||.| |..|=|= +|+-++.-.+ ..|+.++..+|++.|-+.-.++-. .++..+|. ++++
T Consensus 112 ~~~~~la~~s~vPVINg~~~~~HPtQ--aL~Dl~Ti~E~~~g~~l~~l~i~~vGD~~n~va~S~i~~~~~lG~---~v~~ 186 (334)
T PRK12562 112 EVVETLAEYAGVPVWNGLTNEFHPTQ--LLADLLTMQEHLPGKAFNEMTLVYAGDARNNMGNSMLEAAALTGL---DLRL 186 (334)
T ss_pred HHHHHHHHHCCCCEEECCCCCCCCHH--HHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCC---EEEE
T ss_conf 89999999759998889987767179--999999999984689867718999688866357999999997498---6999
Q ss_pred EECCCEEECCCCCCCCHHHHHHHHCCC-----CCCHHHHCCCCCEEEE
Q ss_conf 955960307873326678897745088-----9888886058837862
Q gi|254780137|r 234 YDLEGLVYEGREKKFDKWKSVYAQKSG-----PKPLSETMNNADVFLG 276 (779)
Q Consensus 234 ~D~~Gli~~~r~~~~~~~~~~~a~~~~-----~~~l~ea~~~adv~iG 276 (779)
+--+|+.-.. ....+.+ .+++... ..++.+++++|||+..
T Consensus 187 ~~P~~~~p~~--~~~~~~~-~~~~~~g~~i~~~~d~~~a~~~aDvvyt 231 (334)
T PRK12562 187 VAPQACWPEA--SLVAECS-ALAQKHGGKITLTEDIAAGVKGADFIYT 231 (334)
T ss_pred ECCCCCCCCH--HHHHHHH-HHHHHCCCEEEEEECHHHHCCCCCEEEE
T ss_conf 7897668888--9999999-9999709928998468887057878986
No 210
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent; InterPro: IPR011275 This entry contains bacterial and archaeal malate dehydrogenases, which convert malate into oxaloacetate in the citric acid cycle. The critical residues which discriminate malate dehydrogenase from lactate dehydrogenase have been characterised , and have been used to determine members of this group. ; GO: 0030060 L-malate dehydrogenase activity, 0006108 malate metabolic process.
Probab=85.63 E-value=2.6 Score=21.18 Aligned_cols=102 Identities=22% Similarity=0.302 Sum_probs=68.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCC--EEECCCCCCCC-----HHHHHHHHCCCCCCHHHHCCCCCEEE
Q ss_conf 117874254256789999998198857589995596--03078733266-----78897745088988888605883786
Q gi|254780137|r 203 IKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEG--LVYEGREKKFD-----KWKSVYAQKSGPKPLSETMNNADVFL 275 (779)
Q Consensus 203 ~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~G--li~~~r~~~~~-----~~~~~~a~~~~~~~l~ea~~~adv~i 275 (779)
.||-+.|||--|--.|-+|-.-...| .+.++|-.- =+++|.. || |.+.+-++-|...+-+|.- +.||.+
T Consensus 2 kKisvIGAGfvGaTTAf~lA~KeLar-d~VLlDiPqvEg~pqGKA--LDmyEasPv~gFD~kvTGtnnYaDTA-nSDivV 77 (308)
T TIGR01763 2 KKISVIGAGFVGATTAFLLAEKELAR-DVVLLDIPQVEGVPQGKA--LDMYEASPVEGFDVKVTGTNNYADTA-NSDIVV 77 (308)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHCC-EEEEEEECCCCCCCCCCH--HHHHHCCCCCCCCCEEECCCCCHHHC-CCCEEE
T ss_conf 55899706861258999998674067-168985055586888633--22110277663112362578700211-883799
Q ss_pred ECCC----CCCCCHHHHHHCC---------------CCCEEEEECCCCCCCCH
Q ss_conf 2578----8778988997218---------------99779991787200998
Q gi|254780137|r 276 GLSV----AGALDPAILKFMA---------------EKPLIMVLANPNPEAMP 309 (779)
Q Consensus 276 G~S~----~g~~t~e~v~~M~---------------~~PiIfaLsNP~pEi~p 309 (779)
=+|+ || .|+|.+-+|| ++|||--++||---.|+
T Consensus 78 iTaG~pRKPG-MsReDL~s~Na~I~R~v~~~i~~~Spn~iIvvv~NPlDaMTy 129 (308)
T TIGR01763 78 ITAGLPRKPG-MSREDLVSVNADIVREVTSRIVEYSPNAIIVVVSNPLDAMTY 129 (308)
T ss_pred ECCCCCCCCC-CCHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHH
T ss_conf 8167887547-887899861334689999999731899689997180578999
No 211
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=85.60 E-value=1.9 Score=22.18 Aligned_cols=41 Identities=22% Similarity=0.320 Sum_probs=32.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCC
Q ss_conf 117874254256789999998198857589995596030787
Q gi|254780137|r 203 IKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGR 244 (779)
Q Consensus 203 ~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r 244 (779)
.||||.|+|.||+.+|..+.+++-. -.+.++++...+.=++
T Consensus 1 MkvVIIG~G~AG~saA~~l~~~~~~-~~I~v~e~~~~~~y~~ 41 (443)
T PRK09564 1 MKIIIIGGTAAGTSAAAKAKRLNKE-LEIVVYEKTDIISFGA 41 (443)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCC-CCEEEEECCCCCCCCC
T ss_conf 9699999609999999999814939-9999994889877765
No 212
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=85.60 E-value=1.5 Score=22.74 Aligned_cols=38 Identities=24% Similarity=0.394 Sum_probs=32.4
Q ss_pred HHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEE
Q ss_conf 2411787425425678999999819885758999559603
Q gi|254780137|r 201 SDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLV 240 (779)
Q Consensus 201 ~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli 240 (779)
+..+++|.|||-+|++.+.-|.++|+.. +.++++..=+
T Consensus 7 ~~~~v~IIGaG~sGlaaa~~L~~~g~~~--~~i~Ek~~~~ 44 (443)
T COG2072 7 THTDVAIIGAGQSGLAAAYALKQAGVPD--FVIFEKRDDV 44 (443)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCC--EEEEEECCCC
T ss_conf 7554899898788999999999759986--7999705766
No 213
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=85.55 E-value=2.6 Score=21.15 Aligned_cols=89 Identities=12% Similarity=0.209 Sum_probs=60.3
Q ss_pred CCCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEE--ECCCCCCCCHHHHHHHHCCCCCCHHHHCCCCCEE
Q ss_conf 98822411787425425678999999819885758999559603--0787332667889774508898888860588378
Q gi|254780137|r 197 GKKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLV--YEGREKKFDKWKSVYAQKSGPKPLSETMNNADVF 274 (779)
Q Consensus 197 gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli--~~~r~~~~~~~~~~~a~~~~~~~l~ea~~~adv~ 274 (779)
+-...+..+++.|.|..|.|||.-+..-|. ++.+|+++.+- |.+|...|=+--.+|+...+..-..|++.
T Consensus 7 ~~~~~~~DviVIGGGitG~GiArDaA~RGl---~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~e~~lvrEal~----- 78 (532)
T COG0578 7 RLRMEEFDVIVIGGGITGAGIARDAAGRGL---KVALVEKGDLASGTSSRSTKLIHGGLRYLEQYEFSLVREALA----- 78 (532)
T ss_pred CCCCCCCCEEEECCCHHHHHHHHHHHHCCC---EEEEEECCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHH-----
T ss_conf 443357778998986546999999986798---499995476567666763457554166653065479999999-----
Q ss_pred EECCCCCCCCHHHHHHCCCC-----CEEEEECC
Q ss_conf 62578877898899721899-----77999178
Q gi|254780137|r 275 LGLSVAGALDPAILKFMAEK-----PLIMVLAN 302 (779)
Q Consensus 275 iG~S~~g~~t~e~v~~M~~~-----PiIfaLsN 302 (779)
..+++..+++| +.+||..+
T Consensus 79 ---------Er~vL~~~APH~v~p~~~~lp~~~ 102 (532)
T COG0578 79 ---------EREVLLRIAPHLVEPLPFLLPHLP 102 (532)
T ss_pred ---------HHHHHHHHCCCCCCCCCCEEECCC
T ss_conf ---------999999758661136867586368
No 214
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=85.54 E-value=2.6 Score=21.17 Aligned_cols=114 Identities=20% Similarity=0.259 Sum_probs=67.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCCCCCCHHHHCCCCCEEEECCCCCC
Q ss_conf 11787425425678999999819885758999559603078733266788977450889888886058837862578877
Q gi|254780137|r 203 IKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKSGPKPLSETMNNADVFLGLSVAGA 282 (779)
Q Consensus 203 ~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~~~~~l~ea~~~adv~iG~S~~g~ 282 (779)
.+|.+.|.|+=|-++.+++..--..-+-++++|+. .+...+...++. .....++.|.+..+|+++-+..+.+
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~-------~ek~~~~~~~~~-~~~~s~ide~~~~~DlvVEaAS~~A 72 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRD-------EEKAKELEASVG-RRCVSDIDELIAEVDLVVEAASPEA 72 (255)
T ss_pred CEEEEEECCHHHHHHHHHHHCCCCCEEEEEEECCC-------HHHHHHHHHHCC-CCCCCCHHHHHHCCCEEEEECCHHH
T ss_conf 95789823378899999986688643699994488-------788888886038-8763567777302442543078899
Q ss_pred CCHHHHHHCC--CCCEEE---EECCCC-CCCCHHHHHHHCCCEEECCC
Q ss_conf 8988997218--997799---917872-00998899851898798058
Q gi|254780137|r 283 LDPAILKFMA--EKPLIM---VLANPN-PEAMPDEIKKVRPDAMICTG 324 (779)
Q Consensus 283 ~t~e~v~~M~--~~PiIf---aLsNP~-pEi~p~~a~~~~g~aivatG 324 (779)
+.+-..+... .+-||. |||.|. -|-.-+.++....+.-+.+|
T Consensus 73 v~e~~~~~L~~g~d~iV~SVGALad~~l~erl~~lak~~~~rv~~pSG 120 (255)
T COG1712 73 VREYVPKILKAGIDVIVMSVGALADEGLRERLRELAKCGGARVYLPSG 120 (255)
T ss_pred HHHHHHHHHHCCCCEEEEECHHCCCHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 999869999659988999512206867999999998538947993376
No 215
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=85.52 E-value=1.4 Score=22.98 Aligned_cols=31 Identities=29% Similarity=0.508 Sum_probs=26.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEEC
Q ss_conf 1178742542567899999981988575899955
Q gi|254780137|r 203 IKIVTLGAGAAALACLNLLVTMGVRRENIWVYDL 236 (779)
Q Consensus 203 ~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~ 236 (779)
.||+|.|||-||+++|..|.+.|. .+.++.+
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~---~vt~~ea 31 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGY---DVTLYEA 31 (485)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC---CEEEEEC
T ss_conf 928997462788899999986898---5399842
No 216
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=85.39 E-value=2.4 Score=21.40 Aligned_cols=53 Identities=13% Similarity=0.209 Sum_probs=40.7
Q ss_pred HHHCEEEEECCCHHHHHHHHHHHHC-CCCCCCEEEEEC-CCEEECCCCCCCCHHHHHH
Q ss_conf 2241178742542567899999981-988575899955-9603078733266788977
Q gi|254780137|r 200 FSDIKIVTLGAGAAALACLNLLVTM-GVRRENIWVYDL-EGLVYEGREKKFDKWKSVY 255 (779)
Q Consensus 200 l~~~~iv~~GaGaAg~~~a~ll~~~-g~~~~~i~~~D~-~Gli~~~r~~~~~~~~~~~ 255 (779)
.++.-|+|.|||-+|+..|-.|..+ |+ ++.++|+ .+....+|.+.+++.-.+.
T Consensus 30 P~~vDVLIVGAGP~GL~lA~~Lar~~Gv---~~~IIDk~~~~~~~~rA~gl~~RTlEi 84 (634)
T PRK08294 30 PDEVDVLIVGCGPAGLILAAQLSQFPEI---TTRIVERKPGRLELGQADGIACRTMEM 84 (634)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHHCCC---CEEEECCCCCCCCCCCCCEECHHHHHH
T ss_conf 9858889999658999999998713799---889992799999998837777899999
No 217
>PRK06847 hypothetical protein; Provisional
Probab=85.29 E-value=1.6 Score=22.55 Aligned_cols=33 Identities=15% Similarity=0.380 Sum_probs=29.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCC
Q ss_conf 117874254256789999998198857589995596
Q gi|254780137|r 203 IKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEG 238 (779)
Q Consensus 203 ~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~G 238 (779)
.||+|.|||-+|+.+|-.|...|. ++.++++.-
T Consensus 5 kkV~IVGaG~aGL~lA~~L~~~Gi---~v~V~E~~~ 37 (375)
T PRK06847 5 KKVLIVGGGIGGMSAAIALRKAGI---SVDLVEIDP 37 (375)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC---CEEEEECCC
T ss_conf 879999966899999999996799---999990899
No 218
>PRK06753 hypothetical protein; Provisional
Probab=85.28 E-value=1.5 Score=22.75 Aligned_cols=36 Identities=31% Similarity=0.465 Sum_probs=30.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEE
Q ss_conf 117874254256789999998198857589995596030
Q gi|254780137|r 203 IKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVY 241 (779)
Q Consensus 203 ~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~ 241 (779)
.||+|.|||-+|+..|-.|...|. ++.++++.--+.
T Consensus 1 mkV~IVGaGiaGL~~A~~L~~~G~---~v~V~Er~~~~~ 36 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGH---TVKVFEKNESVT 36 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC---CEEEECCCCCCC
T ss_conf 989999945899999999997799---999988899988
No 219
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=85.13 E-value=2.7 Score=21.02 Aligned_cols=105 Identities=15% Similarity=0.105 Sum_probs=55.2
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHC-----------CCCCCHHHHCCCC
Q ss_conf 11787425425678999999819885758999559603078733266788977450-----------8898888860588
Q gi|254780137|r 203 IKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQK-----------SGPKPLSETMNNA 271 (779)
Q Consensus 203 ~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~-----------~~~~~l~ea~~~a 271 (779)
.||.+.|||.=|.|+|-.+...|. ++.++|..-=..+.....+......+... +-..+|.|++.+|
T Consensus 3 kkVAVIGAGvMGsGwAa~FA~aG~---~V~L~Dp~peA~~ki~~~l~~a~~al~~L~~~~l~~~grL~~~~sL~eAV~dA 79 (489)
T PRK07531 3 MKAACIGGGVIGGGWAARFLLNGW---DVAVFDPHPEAERIIGEVLANARRALPGLTDAPLPPEGRLSFCASLAEAVAGA 79 (489)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCHHHHHCCC
T ss_conf 679998718868999999995799---69999488789999999999999987753203556467768638899997479
Q ss_pred CEEEECCCC-CCCCHHHHHHC---CCCCEEEEECCCCCCCCHHHH
Q ss_conf 378625788-77898899721---899779991787200998899
Q gi|254780137|r 272 DVFLGLSVA-GALDPAILKFM---AEKPLIMVLANPNPEAMPDEI 312 (779)
Q Consensus 272 dv~iG~S~~-g~~t~e~v~~M---~~~PiIfaLsNP~pEi~p~~a 312 (779)
|..+=.--- =-+++++.+.. ++.-.|++-| |+-+.|.+.
T Consensus 80 DlVqEaVPE~LdIKq~vf~eLd~~~~~~aIiASs--TSgl~~S~l 122 (489)
T PRK07531 80 DWIQESVPERLDLKHKVLAEIEAAARPDALIGSS--TSGFKPSEL 122 (489)
T ss_pred CEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEC--CCCCCHHHH
T ss_conf 9999878566999999999999767998389853--665889999
No 220
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=85.07 E-value=1.2 Score=23.41 Aligned_cols=36 Identities=11% Similarity=0.138 Sum_probs=27.3
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCE
Q ss_conf 178742542567899999981988575899955960
Q gi|254780137|r 204 KIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGL 239 (779)
Q Consensus 204 ~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gl 239 (779)
.||+.|+|.||+.++..|.......-+|.++|.+--
T Consensus 1 hiVIvGgG~aG~~~a~~L~~~~~~~~~ItLId~~~~ 36 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSST 36 (364)
T ss_pred CEEEECCHHHHHHHHHHHCCCCCCCCEEEEECCCCC
T ss_conf 999999609999999997041789983999999886
No 221
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=84.62 E-value=1.7 Score=22.36 Aligned_cols=34 Identities=35% Similarity=0.571 Sum_probs=29.7
Q ss_pred HHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf 2411787425425678999999819885758999559
Q gi|254780137|r 201 SDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLE 237 (779)
Q Consensus 201 ~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~ 237 (779)
.--||+|.|+|.||+.+|-.+..+|. ++.++|+.
T Consensus 16 ~gkkV~IIGaGPaGlsAA~~aa~~G~---~v~viEk~ 49 (350)
T PRK12770 16 TGKKVAIIGAGPAGLAAAGYLACLGH---EVHVYDKL 49 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC---CEEEEEEC
T ss_conf 97989999955889999999997899---85999536
No 222
>PRK05868 hypothetical protein; Validated
Probab=84.54 E-value=1.9 Score=22.13 Aligned_cols=38 Identities=18% Similarity=0.162 Sum_probs=32.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECC
Q ss_conf 11787425425678999999819885758999559603078
Q gi|254780137|r 203 IKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEG 243 (779)
Q Consensus 203 ~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~ 243 (779)
.||+|.|||-||.+.|-.|.+.|. ++.++++.--+...
T Consensus 2 ~kVlIvGaGiAGlalA~~L~r~G~---~VtV~Er~p~~r~~ 39 (372)
T PRK05868 2 KTVLVSGASVAGTAAAYWLGRHGY---SVTMVERHPGLRPG 39 (372)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC---CEEEEECCCCCCCC
T ss_conf 999998988899999999985899---88999579998889
No 223
>pfam00743 FMO-like Flavin-binding monooxygenase-like. This family includes FMO proteins and cyclohexanone monooxygenase.
Probab=84.54 E-value=1.9 Score=22.13 Aligned_cols=32 Identities=19% Similarity=0.401 Sum_probs=25.6
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf 11787425425678999999819885758999559
Q gi|254780137|r 203 IKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLE 237 (779)
Q Consensus 203 ~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~ 237 (779)
-||.|.|||.+|++.++-+++.|.. ..++++.
T Consensus 2 KrVAIIGAG~SGL~a~K~lle~G~~---~~~FE~~ 33 (532)
T pfam00743 2 KKVAVIGAGVSGLSSIKCCLEEGLE---PTCFERS 33 (532)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCC---EEEEECC
T ss_conf 8799989729999999999877998---2999779
No 224
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=84.53 E-value=1.2 Score=23.44 Aligned_cols=116 Identities=21% Similarity=0.336 Sum_probs=61.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCE--EECCCCCCCCHHHHHHHH-CCC---CCCHHHHCCCCCE-EE
Q ss_conf 1178742542567899999981988575899955960--307873326678897745-088---9888886058837-86
Q gi|254780137|r 203 IKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGL--VYEGREKKFDKWKSVYAQ-KSG---PKPLSETMNNADV-FL 275 (779)
Q Consensus 203 ~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gl--i~~~r~~~~~~~~~~~a~-~~~---~~~l~ea~~~adv-~i 275 (779)
.+|.+.|+|+=|++.+.++..-|- .=.+|..|..=+ |..+|. |+...+-.. +.+ ..+|.++++++|+ ++
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~-~V~lw~r~~~~~~~i~~~~~---N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~ 77 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGH-EVRLWGRDEEIVAEINETRE---NPKYLPGILLPPNLKATTDLAEALDGADIIVI 77 (329)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHCCC---CCCCCCCCCCCCCCCCCCCHHHHHHCCCEEEE
T ss_conf 618998178379999999996698-46999628999999973476---70105996288632224689999722999999
Q ss_pred ECCCCCCCCHHHHHHCC----CCCEEEEECC---C-CCCCCHHHHHHHCC-C-EEECCC
Q ss_conf 25788778988997218----9977999178---7-20099889985189-8-798058
Q gi|254780137|r 276 GLSVAGALDPAILKFMA----EKPLIMVLAN---P-NPEAMPDEIKKVRP-D-AMICTG 324 (779)
Q Consensus 276 G~S~~g~~t~e~v~~M~----~~PiIfaLsN---P-~pEi~p~~a~~~~g-~-aivatG 324 (779)
+++. -+.+++++.+. ++.+|.-++- | |...+.|.+.+.-+ . ..+=+|
T Consensus 78 avPs--~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~~~vLSG 134 (329)
T COG0240 78 AVPS--QALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNPIAVLSG 134 (329)
T ss_pred ECCH--HHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEEC
T ss_conf 7875--78999999876433678749997446558876519999999739981899978
No 225
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=84.48 E-value=2.9 Score=20.83 Aligned_cols=134 Identities=20% Similarity=0.321 Sum_probs=76.8
Q ss_pred HHHHHHHHHHCCCCCEEEHHHCCCCHHHHHHHHHHHHHCCCCCC---CCCCCHHHHHHHHHHHHHHHHCCCHHHCEEEEE
Q ss_conf 99999998708884606222064801579999999871894216---877218999999999999970988224117874
Q gi|254780137|r 132 DTMVSTIVALEPTFGGINLEDIKAPECFEVERILSQKLKIPFLH---DDQHGTAVTVTAATLNGMKLVGKKFSDIKIVTL 208 (779)
Q Consensus 132 ~e~i~~v~~~~p~fg~i~lEDi~~p~~f~i~~~l~~~~~ipvf~---DD~qGTa~v~lA~llnAl~~~gk~l~~~~iv~~ 208 (779)
|-+-++++.+.--+-+|-+-.++. ...+.+.+..++||.| |..|=| =+|+-++.-.+.-|++++..+|++.
T Consensus 88 Esi~DT~~vls~~~D~iv~R~~~~----~~~~~~a~~s~vPViNg~~~~~HPt--Q~L~D~~Ti~E~~~~~~~~lkva~v 161 (332)
T PRK04284 88 ETTKDTARVLGGMYDGIEYRGFSQ----RTVETLAEYSGVPVWNGLTDEDHPT--QVLADFLTAKEVLKKPYADINFTYV 161 (332)
T ss_pred CCHHHHHHHHHHHCCEEEEECCCH----HHHHHHHHHCCCCEEECCCCCCCCH--HHHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 789999999996288899953461----8999999867999886899877726--8998889999971366567289996
Q ss_pred CCCHHHHHH--HHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCC----CCCCHHHHCCCCCEEEE
Q ss_conf 254256789--999998198857589995596030787332667889774508----89888886058837862
Q gi|254780137|r 209 GAGAAALAC--LNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKS----GPKPLSETMNNADVFLG 276 (779)
Q Consensus 209 GaGaAg~~~--a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~----~~~~l~ea~~~adv~iG 276 (779)
|-|.-.++- ..++..+|. +++++--+|+.-. ++.++..+...++.. -..++.++++++||+.-
T Consensus 162 GD~~nnVa~S~~~~~~~~g~---~~~~~~P~~~~p~--~~~~~~~~~~~~~~g~~~~~~~d~~~av~~aDviyt 230 (332)
T PRK04284 162 GDGRNNVANALMQGAAIMGM---NFHLVCPKELNPT--DELLNRCKNIAAENGGNILITDDIDQGVKGSDVIYT 230 (332)
T ss_pred CCCCCCHHHHHHHHHHHCCC---CEEEECCCCCCCC--HHHHHHHHHHHHHCCCEEEEECCHHHHHCCCCEEEE
T ss_conf 79886511579999997599---3799758555889--999999999999719908995149888525889987
No 226
>PRK06185 hypothetical protein; Provisional
Probab=84.26 E-value=2.8 Score=20.94 Aligned_cols=52 Identities=17% Similarity=0.162 Sum_probs=38.7
Q ss_pred HHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCE-EECCCCCCCCHHHHH
Q ss_conf 2241178742542567899999981988575899955960-307873326678897
Q gi|254780137|r 200 FSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGL-VYEGREKKFDKWKSV 254 (779)
Q Consensus 200 l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gl-i~~~r~~~~~~~~~~ 254 (779)
.++..|+|.|||-+|...|-+|...|+ ++.+++++.- ....|...+++.-..
T Consensus 4 ~~~tDV~IVGaGpaGL~lAl~Lar~Gi---~V~VlEk~~~~~~~~Rg~~i~p~tl~ 56 (409)
T PRK06185 4 VETTDCCIVGGGPAGMMLGLLLARAGV---DVTVLEKHADFLRDFRGDTVHPSTLE 56 (409)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCC---CEEEECCCCCCCCCCEEEEECHHHHH
T ss_conf 878998999918899999999997799---99999189998778618987899999
No 227
>pfam01266 DAO FAD dependent oxidoreductase. This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.
Probab=84.22 E-value=1.8 Score=22.28 Aligned_cols=34 Identities=21% Similarity=0.387 Sum_probs=29.3
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEE
Q ss_conf 1787425425678999999819885758999559603
Q gi|254780137|r 204 KIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLV 240 (779)
Q Consensus 204 ~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli 240 (779)
.|+|.|||-+|+.+|-.|...|. ++.++|+..+-
T Consensus 1 dv~IIGaGi~Gls~A~~La~~G~---~V~vie~~~~~ 34 (309)
T pfam01266 1 DVVVIGGGIVGLSTAYELARRGL---SVTLLERGDLA 34 (309)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC---CEEEECCCCCC
T ss_conf 99999927999999999997899---59999499988
No 228
>TIGR02032 GG-red-SF geranylgeranyl reductase family; InterPro: IPR011777 This entry includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates..
Probab=84.17 E-value=1.5 Score=22.75 Aligned_cols=33 Identities=21% Similarity=0.404 Sum_probs=28.7
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEE
Q ss_conf 787425425678999999819885758999559603
Q gi|254780137|r 205 IVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLV 240 (779)
Q Consensus 205 iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli 240 (779)
|||.|||-||...|..+...|. ++.++|++=+.
T Consensus 3 VvvvGaGPaG~~aA~~~A~~G~---~Vllle~~~~~ 35 (343)
T TIGR02032 3 VVVVGAGPAGSSAAYRLAKKGL---RVLLLEKKSFP 35 (343)
T ss_pred EEEECCCHHHHHHHHHHHHCCC---EEEEEEEHHHC
T ss_conf 8998277468999999995697---38898504507
No 229
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.93 E-value=3.1 Score=20.67 Aligned_cols=116 Identities=13% Similarity=0.216 Sum_probs=61.5
Q ss_pred CCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEE
Q ss_conf 35577734999747368898988999999999999998189972999970255788897789999999999873799599
Q gi|254780137|r 602 MCIVRDNFLFFTDTHVSAEPSAMEIADSTILASQAICSLGMRPKVSVLFHSNSGSHCIKSSLKMRDSFEKICELSKNLEV 681 (779)
Q Consensus 602 il~~~~~~lFiaDtaVNi~PtaEqLAdIa~~aa~~ar~lGiePkVAlLS~SnfGs~~~~s~~kvr~A~eil~~~~pd~~V 681 (779)
.+-..+++.|+=|.-=. +| ..+....+.|. +|-+ ++. -|..+..+-. ...+.++++-..+.+
T Consensus 283 ~v~~~~Gv~fiNDSKaT-N~---------~a~~~AL~s~~-~~ii-lI~---GG~~K~~d~~---~L~~~~~~~vk~v~~ 344 (418)
T PRK00683 283 YLGEKDGVHYINDSKAT-TV---------SAVEKALLAVG-KDVI-VIL---GGRNKGGDFP---SLLPVLRQTAKHVVA 344 (418)
T ss_pred EEEEECCCEEECCCCCC-CH---------HHHHHHHHHCC-CCCE-EEE---CCCCCCCCHH---HHHHHHHHCCCEEEE
T ss_conf 88881782376377678-98---------99999998567-8858-997---5787667869---999998631849999
Q ss_pred ECCCCHHHHCCHHHHHHCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCEEECHHHCCCCCCEEECCCCCCHHHHHH
Q ss_conf 86730465329898963089987777777788189128889999999865986871443145898798787638988999
Q gi|254780137|r 682 DAIVQEEVCLSEIFCDKDVPNTSSSQDAQLLVFPNIDSANIALEMAKSVTNGLHIGTLLLGAALPVHIVPSSVSVREIID 761 (779)
Q Consensus 682 DGemq~D~AL~~~ia~~K~p~S~laG~ANVLIfPnLeAaNI~yKllq~lgga~aiGPIL~G~~kPV~ilsr~~Sv~dIvn 761 (779)
-|+.....+ + .+.+..++.++.+|+.| .+....++.. | -+.++|++|+.-|...
T Consensus 345 ~G~~~~~i~------~------~l~~~~~~~~~~~l~eA---v~~a~~~a~~---g--------d~VLLSPacaSfD~F~ 398 (418)
T PRK00683 345 MGECRQEIA------Q------ALSEKFPLTVVKDLQEA---VSCAQEIAQP---G--------DVILLSPGCASFDQFR 398 (418)
T ss_pred ECCCHHHHH------H------HHHCCCCEEECCCHHHH---HHHHHHHCCC---C--------CEEEECCCCCCCCCCC
T ss_conf 688999999------9------87569987985989999---9999984789---8--------9899897550100215
No 230
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=83.80 E-value=1.9 Score=22.06 Aligned_cols=36 Identities=22% Similarity=0.380 Sum_probs=30.7
Q ss_pred HCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEE
Q ss_conf 411787425425678999999819885758999559603
Q gi|254780137|r 202 DIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLV 240 (779)
Q Consensus 202 ~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli 240 (779)
+..|||.|||-||..+|..+.+.|+ ++.++|++..+
T Consensus 3 ~~DVvIVGaGPAGs~aA~~la~~G~---~VlvlEk~~~~ 38 (396)
T COG0644 3 EYDVVIVGAGPAGSSAARRLAKAGL---DVLVLEKGSEP 38 (396)
T ss_pred EEEEEEECCCHHHHHHHHHHHHCCC---EEEEEECCCCC
T ss_conf 7889998978899999999985799---29999657889
No 231
>PRK07588 hypothetical protein; Provisional
Probab=83.79 E-value=2 Score=21.92 Aligned_cols=35 Identities=23% Similarity=0.219 Sum_probs=29.6
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEE
Q ss_conf 11787425425678999999819885758999559603
Q gi|254780137|r 203 IKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLV 240 (779)
Q Consensus 203 ~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli 240 (779)
.||+|.|||-||.+.|-.|...|. ++.++++.--+
T Consensus 1 mkVlIvGaGiaGLalA~~L~r~G~---~v~V~Er~~~~ 35 (391)
T PRK07588 1 MKIAISGAGIAGATLAHWLQRTGH---EPTLIERAPKL 35 (391)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC---CEEEEECCCCC
T ss_conf 979999932899999999986899---98999038988
No 232
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=83.62 E-value=1 Score=23.94 Aligned_cols=83 Identities=29% Similarity=0.351 Sum_probs=43.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCE--EECCCCC--CCCHHHHHHHHCCC---CCCHHHHCCCCCEEE
Q ss_conf 1178742542567899999981988575899955960--3078733--26678897745088---988888605883786
Q gi|254780137|r 203 IKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGL--VYEGREK--KFDKWKSVYAQKSG---PKPLSETMNNADVFL 275 (779)
Q Consensus 203 ~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gl--i~~~r~~--~~~~~~~~~a~~~~---~~~l~ea~~~adv~i 275 (779)
.||.+.|+|+=|++++..+..-+-.- .+|..|..-+ |-+.|.+ ++...+ + +.+ ..++.|+++++|+++
T Consensus 2 mkI~ViGaGawGtAlA~~la~n~~~V-~lw~r~~~~~~~In~~~~n~~ylp~i~--L--~~nI~~t~dl~~~l~~ad~ii 76 (325)
T PRK00094 2 MKIAVLGAGSWGTALAILLARNGHDV-VLWGRDPEHAAEINTDRENPRYLPGIK--L--PDNLRATSDLAEALADADLIL 76 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEE-EEEEECHHHHHHHHHCCCCCCCCCCCC--C--CCCEEEECCHHHHHHCCCEEE
T ss_conf 88999898999999999999789978-999838999999996498865689785--8--998389789999983798499
Q ss_pred ECCCCCCCCHHHHHHC
Q ss_conf 2578877898899721
Q gi|254780137|r 276 GLSVAGALDPAILKFM 291 (779)
Q Consensus 276 G~S~~g~~t~e~v~~M 291 (779)
= ..|-.+.+++++..
T Consensus 77 i-avPs~~~~~~l~~i 91 (325)
T PRK00094 77 V-AVPSHAFREVLKQL 91 (325)
T ss_pred E-ECCHHHHHHHHHHH
T ss_conf 9-45769999999999
No 233
>TIGR01372 soxA sarcosine oxidase, alpha subunit family; InterPro: IPR006277 This set of sequences describe the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members share the same function. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate . Bacterial sarcosine oxidases have been isolated from over a dozen different organisms and fall into two major classes (1) monomeric form that contains only covalent flavin and (2) heterotetrameric (alpha, beta, gamma, delta) form that contain a covalent and noncovalent flavin, this entry represents the heterotetrameric form. ; GO: 0008115 sarcosine oxidase activity, 0046653 tetrahydrofolate metabolic process.
Probab=83.53 E-value=1.8 Score=22.32 Aligned_cols=43 Identities=23% Similarity=0.384 Sum_probs=33.5
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECC----CEEECCCCCCCC
Q ss_conf 1787425425678999999819885758999559----603078733266
Q gi|254780137|r 204 KIVTLGAGAAALACLNLLVTMGVRRENIWVYDLE----GLVYEGREKKFD 249 (779)
Q Consensus 204 ~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~----Gli~~~r~~~~~ 249 (779)
=|+|.|||.||++-|+.--..|+ +++|||-+ |-|.....+..+
T Consensus 178 DVLVVGaGPAGLAAA~aAa~~GA---rViL~DE~~~~GGsL~~~~g~~ID 224 (1026)
T TIGR01372 178 DVLVVGAGPAGLAAALAAARAGA---RVILVDEQAEAGGSLLSEAGETID 224 (1026)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC---EEEEEECCCCCCCCCCCCCCCCCC
T ss_conf 47887889679999999964798---899970676577755677876017
No 234
>PRK08605 D-lactate dehydrogenase; Validated
Probab=83.45 E-value=3.2 Score=20.54 Aligned_cols=169 Identities=12% Similarity=0.200 Sum_probs=103.1
Q ss_pred HHHHHCCCCEEEEECCCCCHHHHHHHHHHHC----CCCCEEEHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCC---HHHH
Q ss_conf 9986269852654238898899999998708----88460622206480157999999987189421687721---8999
Q gi|254780137|r 112 LFKKFAGINVFDIEINAKDVDTMVSTIVALE----PTFGGINLEDIKAPECFEVERILSQKLKIPFLHDDQHG---TAVT 184 (779)
Q Consensus 112 L~k~~agid~~~i~~~~~d~~e~i~~v~~~~----p~fg~i~lEDi~~p~~f~i~~~l~~~~~ipvf~DD~qG---Ta~v 184 (779)
+-+...|.|++=+.-.++=..++++..+.+- -++ |+-+..|- .+..++ .+|+|+|---.. +|=-
T Consensus 39 ~i~~~~~~D~i~v~~~~~i~~~vl~~~~~l~iK~I~r~-gvG~DnID-------l~~a~~-~gI~V~n~P~~~~~aVAE~ 109 (332)
T PRK08605 39 NVEEVEGFDGLSLSQQIPLSEAIYKLLNELGIKQIAQR-SAGFDTYD-------LELANK-YNIIISNVPSYSPESIAEF 109 (332)
T ss_pred HHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCEEEEEC-CCCCCHHH-------HHHHHH-CCCEEEECCCCCHHHHHHH
T ss_conf 99985799889997079779999996663697799977-72174546-------999997-9998995998684899999
Q ss_pred HHHHHHHHHHH-------------------HCCCHHHCEEEEECCCHHHHHHHHHH-HHCCCCCCCEEEEECCCEEECCC
Q ss_conf 99999999997-------------------09882241178742542567899999-98198857589995596030787
Q gi|254780137|r 185 VTAATLNGMKL-------------------VGKKFSDIKIVTLGAGAAALACLNLL-VTMGVRRENIWVYDLEGLVYEGR 244 (779)
Q Consensus 185 ~lA~llnAl~~-------------------~gk~l~~~~iv~~GaGaAg~~~a~ll-~~~g~~~~~i~~~D~~Gli~~~r 244 (779)
+++-+|+.+|- .|+.+...++-+.|.|.=|..+++++ ..+|+ ++...|.. ..
T Consensus 110 ai~liL~l~R~i~~~~~~~~~~~~~w~~~~~g~~l~~ktvGIiG~G~IG~~vak~~a~~fgm---~vi~yd~~----~~- 181 (332)
T PRK08605 110 TVTQAINLVRHFNLIQTKVREHDFRWEPPILSRSIKDLKVAVIGTGRIGLAVAKIFAKGYGC---DVVAYDPF----PN- 181 (332)
T ss_pred HHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCEECCCCEEEEEEEEHHHHHHHHHHHHHCCC---EEEEECCC----CC-
T ss_conf 99999999856599999998258764776575450377899997436889999999875698---26787788----76-
Q ss_pred CCCCCHHHHHHHHCCCCCCHHHHCCCCCEEEE-C----CCCCCCCHHHHHHCCCCCEEEEECCCC
Q ss_conf 33266788977450889888886058837862-5----788778988997218997799917872
Q gi|254780137|r 245 EKKFDKWKSVYAQKSGPKPLSETMNNADVFLG-L----SVAGALDPAILKFMAEKPLIMVLANPN 304 (779)
Q Consensus 245 ~~~~~~~~~~~a~~~~~~~l~ea~~~adv~iG-~----S~~g~~t~e~v~~M~~~PiIfaLsNP~ 304 (779)
+....+. .-..+|.|.++.+|++.- + +..+.++++.++.|-+..++-=.|--.
T Consensus 182 -----~~~~~~~--~~~~~l~ell~~sDiIslh~Plt~~T~~lI~~~~l~~MK~~a~lINtaRG~ 239 (332)
T PRK08605 182 -----AKAATYV--DYKDTIEEAVEGADIVTLHMPATKYNTYLFNADLFKHFKKGAVFVNCARGS 239 (332)
T ss_pred -----HHHHHCC--EECCCHHHHHHHCCEEEEECCCCHHHHHHCCHHHHHHCCCCCEEEEECCCC
T ss_conf -----5566207--021689999864999999336883550121899997224796899906865
No 235
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=83.43 E-value=1.9 Score=22.07 Aligned_cols=33 Identities=24% Similarity=0.439 Sum_probs=28.0
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEE
Q ss_conf 787425425678999999819885758999559603
Q gi|254780137|r 205 IVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLV 240 (779)
Q Consensus 205 iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli 240 (779)
|||.|||-||+.+|..|...|. ++.+++...-+
T Consensus 1 VvVIGaGlaGL~AA~~L~~~G~---~V~VlEa~~r~ 33 (430)
T TIGR03467 1 VVIIGGGLAGLSAAVELARAGV---RVTLFEARPRL 33 (430)
T ss_pred CEEECCCHHHHHHHHHHHHCCC---CEEEEECCCCC
T ss_conf 2998786899999999987899---88999489988
No 236
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=83.39 E-value=3.2 Score=20.53 Aligned_cols=95 Identities=16% Similarity=0.178 Sum_probs=66.5
Q ss_pred HHHCCCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCCCCCCHHHHCCCCCE
Q ss_conf 97098822411787425425678999999819885758999559603078733266788977450889888886058837
Q gi|254780137|r 194 KLVGKKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKSGPKPLSETMNNADV 273 (779)
Q Consensus 194 ~~~gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~~~~~l~ea~~~adv 273 (779)
...|..+..-++-+.|.|.=|.++++.+...|+ ++...|++.. .+....+. -....+.|.++.+|+
T Consensus 138 ~~~~~~l~gktvGIiG~GrIG~avA~r~~~Fgm---~v~y~~~~~~---------~~~~~~~~--~~y~~l~ell~~sDi 203 (324)
T COG1052 138 PLLGFDLRGKTLGIIGLGRIGQAVARRLKGFGM---KVLYYDRSPN---------PEAEKELG--ARYVDLDELLAESDI 203 (324)
T ss_pred CCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCC---EEEEECCCCC---------HHHHHHCC--CEECCHHHHHHHCCE
T ss_conf 444446778888997848899999998721796---8998668874---------55574058--604168999976999
Q ss_pred EEECC-----CCCCCCHHHHHHCCCCCEEEEECC
Q ss_conf 86257-----887789889972189977999178
Q gi|254780137|r 274 FLGLS-----VAGALDPAILKFMAEKPLIMVLAN 302 (779)
Q Consensus 274 ~iG~S-----~~g~~t~e~v~~M~~~PiIfaLsN 302 (779)
+...- ..+.+..+.++.|.+..++-=.|-
T Consensus 204 i~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaR 237 (324)
T COG1052 204 ISLHCPLTPETRHLINAEELAKMKPGAILVNTAR 237 (324)
T ss_pred EEEECCCCHHHHHHCCHHHHHHCCCCEEEEECCC
T ss_conf 9997799837665329999975689769996487
No 237
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=83.33 E-value=3.2 Score=20.56 Aligned_cols=35 Identities=20% Similarity=0.319 Sum_probs=30.3
Q ss_pred HHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf 22411787425425678999999819885758999559
Q gi|254780137|r 200 FSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLE 237 (779)
Q Consensus 200 l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~ 237 (779)
+++.-|+|.|||-+|..+|-.|...|+ ++.++|++
T Consensus 2 ~~~~DV~IvGaGp~Gl~lA~~La~~G~---~v~viE~~ 36 (405)
T PRK08850 2 MQSVDVAIIGGGMVGLALAAALKDSDL---RIAVIEGQ 36 (405)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCC---CEEEEECC
T ss_conf 998768999915899999999985899---78999379
No 238
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=83.30 E-value=3.2 Score=20.50 Aligned_cols=62 Identities=16% Similarity=0.304 Sum_probs=32.2
Q ss_pred CCCCCCCCCCHHHH-HHHHHHHHHHHHCCCHHHCEEEEECC-CHHHHHHHHHHHHCCCCCCCEEEEEC
Q ss_conf 94216877218999-99999999997098822411787425-42567899999981988575899955
Q gi|254780137|r 171 IPFLHDDQHGTAVT-VTAATLNGMKLVGKKFSDIKIVTLGA-GAAALACLNLLVTMGVRRENIWVYDL 236 (779)
Q Consensus 171 ipvf~DD~qGTa~v-~lA~llnAl~~~gk~l~~~~iv~~Ga-GaAg~~~a~ll~~~g~~~~~i~~~D~ 236 (779)
+|---++.+....- +++..+.+++..+.+ ...+++++|| |.-|+....+...+|. +++.+++
T Consensus 132 iP~~~~~~~aa~~~~~~~t~~~al~~~~~~-~g~~VlI~Ga~G~vG~~aiqlak~~Ga---~vi~v~~ 195 (332)
T PRK13771 132 VPPGVSDEAAVIAACVTGMIYRGLRRAGVS-EGETVLVTGAGGGVGIHAVQVAKAYGA---KVIAVTT 195 (332)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHCCC-CCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEEC
T ss_conf 798753688988767889999999971999-999999977877589999999998699---8999949
No 239
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=83.25 E-value=2.2 Score=21.72 Aligned_cols=35 Identities=29% Similarity=0.335 Sum_probs=30.8
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEE
Q ss_conf 1787425425678999999819885758999559603
Q gi|254780137|r 204 KIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLV 240 (779)
Q Consensus 204 ~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli 240 (779)
||.+.|+|.=|.-++.+|..+|+. ++.++|-+=+-
T Consensus 1 kV~IvG~GGLG~~~a~~La~aGvg--~i~lvD~D~Ve 35 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVG--NLKLVDFDVVE 35 (174)
T ss_pred CEEEECCCHHHHHHHHHHHHHCCC--EEEEEECCCCC
T ss_conf 989987678899999999981897--39999899466
No 240
>PRK06126 hypothetical protein; Provisional
Probab=82.98 E-value=2.2 Score=21.64 Aligned_cols=54 Identities=15% Similarity=0.183 Sum_probs=40.7
Q ss_pred CCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCC-EEECCCCCCCCHHHHH
Q ss_conf 88224117874254256789999998198857589995596-0307873326678897
Q gi|254780137|r 198 KKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEG-LVYEGREKKFDKWKSV 254 (779)
Q Consensus 198 k~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~G-li~~~r~~~~~~~~~~ 254 (779)
.+.+|.-|+|.|||-+|+..|-+|...|+ ++.++|++- .....|...+++.-.+
T Consensus 3 ~~~~~~DVlIVGaGPvGL~lA~~La~~Gi---~v~viEr~~~~~~~~rA~~l~~rtlE 57 (545)
T PRK06126 3 ENTSETPVLIVGGGPVGLALALELGRRGV---DSILVERGDGTAFNPKANATSARSME 57 (545)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCC---CEEEECCCCCCCCCCCEEEECHHHHH
T ss_conf 99888998999949899999999998799---99998899998878858998889999
No 241
>KOG0452 consensus
Probab=82.95 E-value=3 Score=20.74 Aligned_cols=74 Identities=19% Similarity=0.293 Sum_probs=54.1
Q ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCHHHH-------HHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCC
Q ss_conf 99987421322354322589999999862012568-------89999997215894699824774046799999985275
Q gi|254780137|r 410 VAKAAEEAGVASSPIEDYEVYRDSLKRFSFPGRSL-------MKKIFSIAKGTDSKRILFSAGEDERVLRATQILIKENI 482 (779)
Q Consensus 410 Va~aA~~sGvAr~pi~d~~~Y~~~L~~rl~~s~~~-------mr~i~~~AK~~~pKRIVfaEgeD~rVLrAA~~~~eeGi 482 (779)
-||--++.||-+| ||..|- +|-+.+.-+ +|-+..-+++..||+|-+|-||.-.|..||...+++|+
T Consensus 695 AAr~L~~Rg~tpr---dFNsYG----sRRGND~vMaRGTFANIrlvNkl~~k~gP~TvHiPsge~ldvFdAA~~Y~~~g~ 767 (892)
T KOG0452 695 AARYLTERGLTPR---DFNSYG----SRRGNDAVMARGTFANIRLVNKLLSKVGPKTVHIPSGEELDVFDAAERYKSEGI 767 (892)
T ss_pred HHHHHHHCCCCHH---HCCCCC----CCCCCHHHHHCCCCHHHHHHHHHHCCCCCCEEECCCCCEECHHHHHHHHHHCCC
T ss_conf 8888876699834---402201----355753453145400558899874156985475689875117568998875599
Q ss_pred EEEEEECC
Q ss_conf 08999559
Q gi|254780137|r 483 ARPVLIGS 490 (779)
Q Consensus 483 a~PILVG~ 490 (779)
-..||.|.
T Consensus 768 p~iilaGk 775 (892)
T KOG0452 768 PLIILAGK 775 (892)
T ss_pred CEEEEECC
T ss_conf 56999324
No 242
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=82.78 E-value=3.4 Score=20.37 Aligned_cols=134 Identities=21% Similarity=0.300 Sum_probs=80.7
Q ss_pred HHHHHHH-HHHHHHHHHCCCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHC-
Q ss_conf 8999999-99999997098822411787425425678999999819885758999559603078733266788977450-
Q gi|254780137|r 181 TAVTVTA-ATLNGMKLVGKKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQK- 258 (779)
Q Consensus 181 Ta~v~lA-~llnAl~~~gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~- 258 (779)
|+.=+.| +.+++=.+..++. -.+-++|+|.=+-.-.+.+....- -+.|++.++. .+....+..++.+.
T Consensus 110 Ta~RTaAasavAa~~LA~~da--~~laiIGaG~qA~~ql~a~~~v~~-~~~I~i~~r~-------~~~~e~~a~~l~~~~ 179 (330)
T COG2423 110 TALRTAAASAVAAKYLARKDA--STLAIIGAGAQARTQLEALKAVRD-IREIRVYSRD-------PEAAEAFAARLRKRG 179 (330)
T ss_pred HHHHHHHHHHHHHHHHCCCCC--CEEEEECCCHHHHHHHHHHHHHCC-CCEEEEECCC-------HHHHHHHHHHHHHHC
T ss_conf 889999999999998553798--579998884899999999996289-6189997689-------899999999987633
Q ss_pred ----CCCCCHHHHCCCCCEEEECCC--CCCCCHHHHHHCCCCCEEEEEC-C-CC-CCCCHHHHHHHCCCEEECCCCCCCC
Q ss_conf ----889888886058837862578--8778988997218997799917-8-72-0099889985189879805887887
Q gi|254780137|r 259 ----SGPKPLSETMNNADVFLGLSV--AGALDPAILKFMAEKPLIMVLA-N-PN-PEAMPDEIKKVRPDAMICTGRSDFS 329 (779)
Q Consensus 259 ----~~~~~l~ea~~~adv~iG~S~--~g~~t~e~v~~M~~~PiIfaLs-N-P~-pEi~p~~a~~~~g~aivatGrs~~p 329 (779)
....+..++++++|+.+.++. .-+|+.+|++ +.--|=++. | |. -|+.|+.... .+.+| -|++
T Consensus 180 ~~~v~a~~s~~~av~~aDiIvt~T~s~~Pil~~~~l~---~G~hI~aiGad~p~k~Eld~e~l~r--a~~vv----vD~~ 250 (330)
T COG2423 180 GEAVGAADSAEEAVEGADIVVTATPSTEPVLKAEWLK---PGTHINAIGADAPGKRELDPEVLAR--ADRVV----VDSL 250 (330)
T ss_pred CCCCEECCCHHHHHHCCCEEEEECCCCCCEECHHHCC---CCCEEEECCCCCCCCCCCCHHHHHH--CCEEE----ECCH
T ss_conf 8651323689988613998999428998762386658---9708970378996524278999985--09099----7577
Q ss_pred CCCC
Q ss_conf 7435
Q gi|254780137|r 330 NQVN 333 (779)
Q Consensus 330 nQ~N 333 (779)
-|+.
T Consensus 251 ~q~~ 254 (330)
T COG2423 251 EQTR 254 (330)
T ss_pred HHHH
T ss_conf 8850
No 243
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=82.51 E-value=3.3 Score=20.41 Aligned_cols=99 Identities=18% Similarity=0.189 Sum_probs=61.5
Q ss_pred CHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCCCCCCHHHHCCCCCEEEECC
Q ss_conf 82241178742542567899999981988575899955960307873326678897745088988888605883786257
Q gi|254780137|r 199 KFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKSGPKPLSETMNNADVFLGLS 278 (779)
Q Consensus 199 ~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~~~~~l~ea~~~adv~iG~S 278 (779)
-|.+-||||.|-||-|.+-+--+..-|+ ++..-=|+|-|-..|.. |+..-...-...+.+|+++.||+.+-+.
T Consensus 34 ~LKgKkI~IiG~GsQG~aqaLNlRDSGl---dV~~~LR~~si~~k~~S----w~~A~~~Gf~V~t~eeai~~ADvV~~Lt 106 (489)
T PRK05225 34 YLKGKKIVIVGCGAQGLNQGLNMRDSGL---DISYALRKEAIAEKRAS----WRKATENGFKVGTYEELIPQADLVVNLT 106 (489)
T ss_pred HHCCCEEEEECCCHHHHHHHCCCCCCCC---CEEEEECCCHHHHHHHH----HHHHHHCCCCCCCHHHHHHCCCEEEEEC
T ss_conf 7528859998036587776524410588---56999555303341667----9999977996467899732358788708
Q ss_pred C---CCCCCHHHHHHCCCC---------CEEEEECCCC
Q ss_conf 8---877898899721899---------7799917872
Q gi|254780137|r 279 V---AGALDPAILKFMAEK---------PLIMVLANPN 304 (779)
Q Consensus 279 ~---~g~~t~e~v~~M~~~---------PiIfaLsNP~ 304 (779)
- ...+-+++-..|.+. -|+|-.--|.
T Consensus 107 PD~q~~~v~~~i~p~mk~g~~L~faHGfnI~~~~i~~r 144 (489)
T PRK05225 107 PDKQHSDVVRAVQPLMKQGAALGYSHGFNIVEEGEQIR 144 (489)
T ss_pred CCCCHHHHHHHHHHHHCCCCEEEECCCCEEEECCCCCC
T ss_conf 85514899999987612677211145650553123168
No 244
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=82.48 E-value=2.3 Score=21.48 Aligned_cols=40 Identities=30% Similarity=0.550 Sum_probs=32.3
Q ss_pred HHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECC----CEEECC
Q ss_conf 2411787425425678999999819885758999559----603078
Q gi|254780137|r 201 SDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLE----GLVYEG 243 (779)
Q Consensus 201 ~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~----Gli~~~ 243 (779)
...||.+.|+|-||+++|..|..+|. ++.++|+. |++.-+
T Consensus 142 ~gkkVAVIGsGPAGLsaA~~Lar~G~---~VtVfE~~~~~GGll~yG 185 (472)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGH---KVTVFERDDRIGGLLRYG 185 (472)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC---EEEEEECCCCCCCEEEEC
T ss_conf 89989998977899999999986697---589972577777546531
No 245
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=82.40 E-value=1.8 Score=22.26 Aligned_cols=100 Identities=18% Similarity=0.231 Sum_probs=60.8
Q ss_pred CCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECC--C-----CCCCCHHHHHHHHC----CC------
Q ss_conf 8822411787425425678999999819885758999559603078--7-----33266788977450----88------
Q gi|254780137|r 198 KKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEG--R-----EKKFDKWKSVYAQK----SG------ 260 (779)
Q Consensus 198 k~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~--r-----~~~~~~~~~~~a~~----~~------ 260 (779)
++|.+.+|++.|||.-|..++..|..+|+. +|.++|-+=+=-.+ | .+.....|..-|+. .|
T Consensus 37 ~kL~~a~VlvvG~GGLG~p~~~yLaaaGvG--~i~ivD~D~Ve~sNL~RQil~~~~diG~~K~~~A~~~l~~lNp~i~i~ 114 (370)
T PRK05600 37 ERLHNARVLVIGAGGLGCPAMQSLASAGVG--TITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVN 114 (370)
T ss_pred HHHHCCCEEEECCCHHHHHHHHHHHHCCCC--EEEEEECCCCCCCCHHHHHCCCHHHCCCCHHHHHHHHHHHHCCCCCEE
T ss_conf 998619789988875789999999982897--489873898260210555426976669757999999999878997157
Q ss_pred -------CCCHHHHCCCCCEEEECCCCCCCCHHHHHHC---CCCCEEEEE
Q ss_conf -------9888886058837862578877898899721---899779991
Q gi|254780137|r 261 -------PKPLSETMNNADVFLGLSVAGALDPAILKFM---AEKPLIMVL 300 (779)
Q Consensus 261 -------~~~l~ea~~~adv~iG~S~~g~~t~e~v~~M---~~~PiIfaL 300 (779)
.....+.+++.|+.+-+|- +.=|+-.|-.- ...|.|++-
T Consensus 115 ~~~~~l~~~n~~~li~~~DvVvD~tD-Nf~tRylindaC~~~~~PlV~ga 163 (370)
T PRK05600 115 ALRERLTAENAVELLNGVDLVLDGSD-SFATKFLVADAAEITGTPLVWGT 163 (370)
T ss_pred EHHHHCCHHHHHHHHHCCCEEEECCC-CHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 35664699999987636878997788-87999999999998499769845
No 246
>TIGR02734 crtI_fam phytoene desaturase; InterPro: IPR014105 Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family are CrtI and are part of flavin containing amine oxidoreductase family. It is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis..
Probab=82.38 E-value=1.8 Score=22.20 Aligned_cols=219 Identities=19% Similarity=0.199 Sum_probs=101.1
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCCC------CCCHHHHCCCCCEEEECC
Q ss_conf 78742542567899999981988575899955960307873326678897745088------988888605883786257
Q gi|254780137|r 205 IVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKSG------PKPLSETMNNADVFLGLS 278 (779)
Q Consensus 205 iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~~------~~~l~ea~~~adv~iG~S 278 (779)
+|+.|||-||.|+|-+|-+.|. ++.+++++...= ||...+...- =|.=++. +..++|....
T Consensus 1 a~VIGAG~gGLA~A~rL~~~G~---~vtv~E~~d~pG-GRA~~~~~~f-Gf~fD~GPTv~t~P~~~~elF~~-------- 67 (526)
T TIGR02734 1 AVVIGAGFGGLALAIRLQAAGI---RVTVVEKRDKPG-GRAGVLEDDF-GFRFDTGPTVITMPEALEELFAL-------- 67 (526)
T ss_pred CEEECCCHHHHHHHHHHHHCCC---EEEEEEECCCCC-CEEEEEECCC-CEEEECCCCEEECHHHHHHHHHH--------
T ss_conf 9685777689999999973795---289986068987-5055688157-54660588245446789999988--------
Q ss_pred CCCCCCHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHCCCEEECCCCC-CCCCCCCHHHHHHHHHHHHHHCCCCCCCH--
Q ss_conf 887789889972189977999178720099889985189879805887-88774350345566545675137300267--
Q gi|254780137|r 279 VAGALDPAILKFMAEKPLIMVLANPNPEAMPDEIKKVRPDAMICTGRS-DFSNQVNNVLCFPYIFRGALDCGATAITE-- 355 (779)
Q Consensus 279 ~~g~~t~e~v~~M~~~PiIfaLsNP~pEi~p~~a~~~~g~aivatGrs-~~pnQ~NN~l~FPgif~Gal~~~A~~Itd-- 355 (779)
-|.=.++.|..|.=+|- =-+.|. ..|.. |++|-..+ +...-.+|+-
T Consensus 68 -~G~~~~~~v~L~~l~Pf-------------YRl~~~------~dg~~~D~~~~~~~-----------~~~~i~~f~P~d 116 (526)
T TIGR02734 68 -AGRDLADYVELVPLDPF-------------YRLCWE------EDGKQLDVDNDQEE-----------LEAQIARFNPGD 116 (526)
T ss_pred -HCHHHHHHCCCCCCCCC-------------CEEEEC------CCCCEEECCCCHHH-----------HHHHHHHHCCCH
T ss_conf -34316964585315875-------------267517------98854502375899-----------999998728821
Q ss_pred -----HHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCC-HH-HHHH------HHHHHHHHHHHC---CC
Q ss_conf -----89999999999872033136677413876766675223666546-77-8679------888899987421---32
Q gi|254780137|r 356 -----EMKVAAARAMAVLVRDVPPDVVFDNFAKESPVFGPNYLIPSPFD-PN-LISY------IAPAVAKAAEEA---GV 419 (779)
Q Consensus 356 -----~M~~aAa~alA~la~~~~~~~~~~~~~~~~~~~g~~yiiP~~fd-~r-~~~~------va~AVa~aA~~s---Gv 419 (779)
.-++.-++.+ .++|=++++-.||+ ++ ++.. -+...+..|+.| -|
T Consensus 117 ~~~Gy~~fl~~~~~~--------------------y~~~y~~lg~~pF~~~~~ll~~~vl~s~~p~l~~l~a~rsl~~~v 176 (526)
T TIGR02734 117 QVAGYRRFLDYAERV--------------------YREGYRKLGTVPFLSLRDLLKADVLRSDAPQLLALQAWRSLYSKV 176 (526)
T ss_pred HHHHHHHHHHHHHHH--------------------HHHHHHHCCCCCCCCHHHHHCHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 489999999999999--------------------999888604577323376504455552189999860580368898
Q ss_pred CCCCCCCHHHHHHHH---HHHHCCHHHHHHHHHHHHHCCCC-CEEEEECCCCCHHHHHHHHHHH-CCCEEEEEEC
Q ss_conf 235432258999999---98620125688999999721589-4699824774046799999985-2750899955
Q gi|254780137|r 420 ASSPIEDYEVYRDSL---KRFSFPGRSLMKKIFSIAKGTDS-KRILFSAGEDERVLRATQILIK-ENIARPVLIG 489 (779)
Q Consensus 420 Ar~pi~d~~~Y~~~L---~~rl~~s~~~mr~i~~~AK~~~p-KRIVfaEgeD~rVLrAA~~~~e-eGia~PILVG 489 (779)
++ -|+|-..-|+-| .-+++-+-. --.|+.-.-.-+. .=|=||.|==..+.+|...+.+ .+++--+.+.
T Consensus 177 ~~-~~~D~r~LRqafSFh~l~~Gg~P~-~~S~Y~Lis~le~~~GV~fP~GG~~al~~am~~l~~e~~~g~~~~~~ 249 (526)
T TIGR02734 177 AR-FISDERRLRQAFSFHALFVGGNPF-TSSIYALISALEREWGVWFPRGGTGALVAAMAKLFEEADLGGELRLN 249 (526)
T ss_pred HH-HCCCHHHHHHHHCCCCEECCCCCH-HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 62-057624645543056321069831-68999999875442674015653889999999999746874699745
No 247
>PRK07340 ornithine cyclodeaminase; Validated
Probab=82.28 E-value=3.5 Score=20.24 Aligned_cols=116 Identities=15% Similarity=0.194 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHC--
Q ss_conf 899999999999997098822411787425425678999999819885758999559603078733266788977450--
Q gi|254780137|r 181 TAVTVTAATLNGMKLVGKKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQK-- 258 (779)
Q Consensus 181 Ta~v~lA~llnAl~~~gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~-- 258 (779)
||++...+ .+..-.+ ...++.++|+|.=+-.-++.+....- .+++++.++. .+....+...+...
T Consensus 109 TaA~sala----~~~La~~-~~~~l~iiGaG~QA~~~~~a~~~v~~-~~~V~v~~r~-------~~~a~~~~~~~~~~~~ 175 (304)
T PRK07340 109 TAAVSLLA----ARTLAPA-APRDLLLIGTGVQAAHHLEALAALLP-VRRVWVRGRT-------AASAAAFCAAARALGP 175 (304)
T ss_pred HHHHHHHH----HHHHCCC-CCCEEEEECCHHHHHHHHHHHHHHCC-CCEEEEECCC-------HHHHHHHHHHHHCCCC
T ss_conf 89989999----9974347-87517997347999999999998599-7489998799-------8999999999860099
Q ss_pred -CCCCCHHHHCCCCCEEEECCC--CCCCCHHHHHHCCCCCEEEEECCCCC---CCCHHHHH
Q ss_conf -889888886058837862578--87789889972189977999178720---09988998
Q gi|254780137|r 259 -SGPKPLSETMNNADVFLGLSV--AGALDPAILKFMAEKPLIMVLANPNP---EAMPDEIK 313 (779)
Q Consensus 259 -~~~~~l~ea~~~adv~iG~S~--~g~~t~e~v~~M~~~PiIfaLsNP~p---Ei~p~~a~ 313 (779)
....+.++++..+||.+.++. .-+|. ++++ +...|-+....+| |+.++...
T Consensus 176 ~~~~~~~e~av~~aDiI~taT~S~~Pv~~-~~~~---~g~hI~aiGs~~p~~~Eld~~l~~ 232 (304)
T PRK07340 176 TLEPLDGDAIPPAVDVVVTVTTSRTPVYP-EAAR---AGRLVVGVGAFTPDMAELAPRTVR 232 (304)
T ss_pred CEEECCHHHHHHHCCEEEEECCCCCCCCC-CCCC---CCEEEECCCCCCCCCEECCHHHHH
T ss_conf 17976899998428989994189976446-5579---981894137899984356999994
No 248
>PRK12831 putative oxidoreductase; Provisional
Probab=82.26 E-value=2.6 Score=21.19 Aligned_cols=41 Identities=24% Similarity=0.511 Sum_probs=33.2
Q ss_pred HHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECC----CEEECC
Q ss_conf 22411787425425678999999819885758999559----603078
Q gi|254780137|r 200 FSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLE----GLVYEG 243 (779)
Q Consensus 200 l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~----Gli~~~ 243 (779)
-...||.+.|+|-||+++|..|...|. .+.++|+. |++.-+
T Consensus 138 ~~gkkVAVIGsGPAGLsaA~~La~~G~---~VtVfE~~~~~GG~l~yG 182 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKKGY---DVTIFEALHEPGGVLVYG 182 (464)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC---CEEEECCCCCCCCEEEEC
T ss_conf 899989998976899999999997699---179982788889804451
No 249
>PRK11749 putative oxidoreductase; Provisional
Probab=82.15 E-value=2.6 Score=21.18 Aligned_cols=37 Identities=22% Similarity=0.416 Sum_probs=31.3
Q ss_pred CCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf 8822411787425425678999999819885758999559
Q gi|254780137|r 198 KKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLE 237 (779)
Q Consensus 198 k~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~ 237 (779)
.+....||.+.|+|-||+.+|..|...|. ++.++|+.
T Consensus 136 ~~~~gkkVAIIGaGPAGLsAA~~Lar~G~---~VtVfE~~ 172 (460)
T PRK11749 136 APKTGKKVAVIGAGPAGLTAAHRLARKGY---DVTIFEAR 172 (460)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCC---EEEEEECC
T ss_conf 66789989998967899999999997698---47997047
No 250
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=81.78 E-value=2.7 Score=21.05 Aligned_cols=52 Identities=29% Similarity=0.344 Sum_probs=39.3
Q ss_pred CCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEE-CCCCCCCCHHH
Q ss_conf 88224117874254256789999998198857589995596030-78733266788
Q gi|254780137|r 198 KKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVY-EGREKKFDKWK 252 (779)
Q Consensus 198 k~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~-~~r~~~~~~~~ 252 (779)
.+..|.-|+|.|||-+|+.+|-.|...|+ ++.++|++--.+ ..|...+++.-
T Consensus 8 ~~~~d~dVlIVGaGPvGL~lA~~Lar~Gi---~v~vvEr~~~~~~~prA~~l~~rt 60 (554)
T PRK06183 8 ASAHDTDVVIVGAGPVGLTLANLLGQQGV---RVLVLERWPTLYDYPRAVGIDDEA 60 (554)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCC---CEEEEECCCCCCCCCCEEEECHHH
T ss_conf 79898888999959899999999997799---999991899988888689989999
No 251
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit; InterPro: IPR006005 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate. 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. This describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form of the NADPH-dependent or NADH-dependent glutamate synthase (1.4.1.13 from EC and 1.4.1.14 from EC respectively) small subunit. There is no corresponding large subunit. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=81.77 E-value=2.5 Score=21.30 Aligned_cols=107 Identities=23% Similarity=0.339 Sum_probs=55.1
Q ss_pred HHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECC----CEEECCCCCCCCHHHH-HHHHCCCCCCHHHHCCCCCEEE
Q ss_conf 2411787425425678999999819885758999559----6030787332667889-7745088988888605883786
Q gi|254780137|r 201 SDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLE----GLVYEGREKKFDKWKS-VYAQKSGPKPLSETMNNADVFL 275 (779)
Q Consensus 201 ~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~----Gli~~~r~~~~~~~~~-~~a~~~~~~~l~ea~~~adv~i 275 (779)
.=.||-+.|.|-||+|+|+||-++|- .+.++-|. |||.=|=++ |-=.|. ..-|.- .+.+ -+|.|-.-
T Consensus 150 TGkkVAVVGSGPAGLAaA~qLnrAGH---~VTVfER~DR~GGLL~YGIPn-mKLdK~e~v~RRi---~~l~-aEG~~Fvt 221 (517)
T TIGR01317 150 TGKKVAVVGSGPAGLAAADQLNRAGH---TVTVFEREDRVGGLLRYGIPN-MKLDKEEIVDRRI---DLLE-AEGVDFVT 221 (517)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC---CEEEEECCCCCCCCCCCCCCC-CCCCHHHHHHHHH---HHHH-HCCCCCCC
T ss_conf 78668997567579999999853588---389974367888630248887-4337388999999---9987-47842017
Q ss_pred ECCCCCCCCHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHCCCEEECCCCC
Q ss_conf 257887789889972189977999178720099889985189879805887
Q gi|254780137|r 276 GLSVAGALDPAILKFMAEKPLIMVLANPNPEAMPDEIKKVRPDAMICTGRS 326 (779)
Q Consensus 276 G~S~~g~~t~e~v~~M~~~PiIfaLsNP~pEi~p~~a~~~~g~aivatGrs 326 (779)
|+-.+ + -.++.-|--||. ..|+||+.++--.++|.|||+.
T Consensus 222 nteiG-----d----Wdenskitnlsk--~di~~~~L~~~fDAVVLa~Ga~ 261 (517)
T TIGR01317 222 NTEIG-----D----WDENSKITNLSK--KDISADELKEDFDAVVLATGAT 261 (517)
T ss_pred CCCCC-----C----CCCCCCEECCCC--CCCCHHHHHHHCCEEEEECCCC
T ss_conf 83004-----6----534442000223--4268799871469389833788
No 252
>PRK08163 salicylate hydroxylase; Provisional
Probab=81.75 E-value=2.6 Score=21.13 Aligned_cols=36 Identities=17% Similarity=0.317 Sum_probs=30.8
Q ss_pred HCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEE
Q ss_conf 411787425425678999999819885758999559603
Q gi|254780137|r 202 DIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLV 240 (779)
Q Consensus 202 ~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli 240 (779)
..+|+|.|||-+|...|-.|...|. ++.++++.--+
T Consensus 4 ~~~V~IVGaGiaGL~lA~~L~r~Gi---~v~V~Er~~~~ 39 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGI---KVKLLEQAAEI 39 (396)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC---CEEEECCCCCC
T ss_conf 9849998978899999999997899---99999179988
No 253
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=81.70 E-value=3.7 Score=20.10 Aligned_cols=103 Identities=16% Similarity=0.200 Sum_probs=59.1
Q ss_pred CEEEEECC-CHHHHHHHHHHHHCCCC---C-CCEEEEECCCEEECCCCCCCCHHHHHHHHC---CCCCCHHHHCCCCCEE
Q ss_conf 11787425-42567899999981988---5-758999559603078733266788977450---8898888860588378
Q gi|254780137|r 203 IKIVTLGA-GAAALACLNLLVTMGVR---R-ENIWVYDLEGLVYEGREKKFDKWKSVYAQK---SGPKPLSETMNNADVF 274 (779)
Q Consensus 203 ~~iv~~Ga-GaAg~~~a~ll~~~g~~---~-~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~---~~~~~l~ea~~~adv~ 274 (779)
.||.+.|| |.=|..++-+|..-.+. + -.+.++|..+-.-......|+-....+... .-.....++++++|+.
T Consensus 1 ~KV~IiGA~G~IG~~la~~l~~~~l~g~~~~i~l~L~Di~~~~~~~~G~~mdl~~~a~~~~~~v~~~~~~~~~~~~aDvV 80 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVA 80 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCEEECCCHHHHHCCCCEE
T ss_conf 98999899978999999999728636998600899975888655531487866534665558748428858983799889
Q ss_pred EECCC----CCCC-------CHHH-------HHHCC-CCCEEEEECCCCC
Q ss_conf 62578----8778-------9889-------97218-9977999178720
Q gi|254780137|r 275 LGLSV----AGAL-------DPAI-------LKFMA-EKPLIMVLANPNP 305 (779)
Q Consensus 275 iG~S~----~g~~-------t~e~-------v~~M~-~~PiIfaLsNP~p 305 (779)
|=+.+ ||-= +-.+ ++..+ ++.+|+-.|||.-
T Consensus 81 iitaG~prkpG~tR~DLl~~N~~I~k~~~~~i~~~a~p~~~vivvsNPvD 130 (323)
T cd00704 81 ILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPAN 130 (323)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCH
T ss_conf 98278788999827999987489999999999851799838999578646
No 254
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=81.61 E-value=2.5 Score=21.27 Aligned_cols=32 Identities=31% Similarity=0.416 Sum_probs=27.7
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCC
Q ss_conf 17874254256789999998198857589995596
Q gi|254780137|r 204 KIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEG 238 (779)
Q Consensus 204 ~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~G 238 (779)
-|+|.|+|-||..|+..|...|. .+.++|+-+
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~---~vtV~eKg~ 34 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGR---EVTVFEKGR 34 (331)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC---EEEEEECCC
T ss_conf 47997563688999999986695---799997388
No 255
>pfam04198 Sugar-bind Putative sugar-binding domain. This probable domain is found in bacterial transcriptional regulators such as DeoR and SorC. These proteins have an amino-terminal helix-turn-helix pfam00325 that binds to DNA. This domain is probably the ligand regulator binding region. SorC is regulated by sorbose and other members of this family are likely to be regulated by other sugar substrates.
Probab=81.46 E-value=3.8 Score=20.05 Aligned_cols=99 Identities=18% Similarity=0.208 Sum_probs=56.8
Q ss_pred CHHHHHHHHHHHHHCC------CCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHCEEEEECCCHHHHHHHHHHHHCCCCCC
Q ss_conf 0157999999987189------4216877218999999999999970988224117874254256789999998198857
Q gi|254780137|r 156 PECFEVERILSQKLKI------PFLHDDQHGTAVTVTAATLNGMKLVGKKFSDIKIVTLGAGAAALACLNLLVTMGVRRE 229 (779)
Q Consensus 156 p~~f~i~~~l~~~~~i------pvf~DD~qGTa~v~lA~llnAl~~~gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~ 229 (779)
-+|+++|++|+++..+ |...||.+=...| |.. |......-+++-.++-+|-|..=-.+++.+.. ....
T Consensus 4 ~~~~eLe~~L~~~fgL~~~~Vvp~~~~~~~~~~~v---g~~-aA~~L~~~l~~~~~igvswG~Tl~~~~~~l~~--~~~~ 77 (255)
T pfam04198 4 AGCLDLEQRLKEKFGLKEAIVVPDDADEPDTLEAL---GRA-AAQYLSSLLKDGDVVGVGWGRTLSAVAEALTP--KSLR 77 (255)
T ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHH---HHH-HHHHHHHHCCCCCEEEECCCHHHHHHHHHCCC--CCCC
T ss_conf 06999999999984999899977999816899999---999-99999985778988997356899999995697--7889
Q ss_pred CEEEEECCCEEECCCCCCCCHHHHHHHHCCC
Q ss_conf 5899955960307873326678897745088
Q gi|254780137|r 230 NIWVYDLEGLVYEGREKKFDKWKSVYAQKSG 260 (779)
Q Consensus 230 ~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~~ 260 (779)
++.++--.|-+.......-++.-..+|+..+
T Consensus 78 ~~~vV~l~Gg~~~~~~~~~~~i~~~lA~~~~ 108 (255)
T pfam04198 78 DVKFVPLIGGLGRDGSAHSNTVVARLAQKFG 108 (255)
T ss_pred CCEEEECCCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 9789978898998878489999999999969
No 256
>pfam01946 Thi4 Thi4 family. This family includes a putative thiamine biosynthetic enzyme.
Probab=81.35 E-value=2.5 Score=21.25 Aligned_cols=35 Identities=20% Similarity=0.476 Sum_probs=28.3
Q ss_pred HHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf 22411787425425678999999819885758999559
Q gi|254780137|r 200 FSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLE 237 (779)
Q Consensus 200 l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~ 237 (779)
..+.-++|.|||.+|+.+|..|-..|. ++.+++++
T Consensus 15 ~~e~DV~IVGaGpsGL~aA~~LAk~g~---KV~i~E~~ 49 (229)
T pfam01946 15 YAESDVVIVGAGPSGLTAAYYLAKKGL---KVAIIERS 49 (229)
T ss_pred HHHCCEEEECCCCHHHHHHHHHHHCCC---EEEEEECC
T ss_conf 642688998878179999999987898---59999645
No 257
>PRK07680 late competence protein ComER; Validated
Probab=81.33 E-value=3.8 Score=20.02 Aligned_cols=72 Identities=13% Similarity=0.153 Sum_probs=44.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHCC-CCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCCCCCCHHHHCCCCCEEEECCCCC
Q ss_conf 11787425425678999999819-88575899955960307873326678897745088988888605883786257887
Q gi|254780137|r 203 IKIVTLGAGAAALACLNLLVTMG-VRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKSGPKPLSETMNNADVFLGLSVAG 281 (779)
Q Consensus 203 ~~iv~~GaGaAg~~~a~ll~~~g-~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~~~~~l~ea~~~adv~iG~S~~g 281 (779)
.||.|.|+|.=|.++++-++..+ ...++|+++|+. .+.....+..+....-..+..++++.+|+++-+-.|.
T Consensus 1 MkI~fIG~GnMg~Aii~gl~~~~~~~~~~i~i~~r~-------~~~~~~l~~~~~~i~~~~~~~~~~~~~dvIiLaVKPq 73 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESRAVKPSCLTITNRT-------PAKAYHIKEKYPSIHVAKTIEEVIEQSELIFICVKPL 73 (273)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCC-------HHHHHHHHHHCCCEEEECCHHHHHHCCCEEEEECCHH
T ss_conf 989998769999999999997799894569998899-------8999999987699088688899984099899964888
No 258
>pfam01494 FAD_binding_3 FAD binding domain. This domain is involved in FAD binding in a number of enzymes.
Probab=81.33 E-value=2.6 Score=21.17 Aligned_cols=47 Identities=19% Similarity=0.300 Sum_probs=33.7
Q ss_pred HCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCE-EECCCCCCCCHH
Q ss_conf 41178742542567899999981988575899955960-307873326678
Q gi|254780137|r 202 DIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGL-VYEGREKKFDKW 251 (779)
Q Consensus 202 ~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gl-i~~~r~~~~~~~ 251 (779)
|.-|+|.|||-+|..+|..|...|. ++.++++.-- -..+|...+.+.
T Consensus 1 ~~DV~IvGaG~aGl~lA~~L~~~Gi---~v~V~Er~~~~~~~g~g~~l~p~ 48 (349)
T pfam01494 1 ETDVLIVGGGPAGLMLALLLARAGV---RVVLVERHATTSVLPRAGGLNQR 48 (349)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCC---CEEEECCCCCCCCCCEEEEECHH
T ss_conf 9978999928899999999987799---89999289998878779998989
No 259
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=81.02 E-value=2.5 Score=21.23 Aligned_cols=36 Identities=19% Similarity=0.525 Sum_probs=27.6
Q ss_pred CHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf 822411787425425678999999819885758999559
Q gi|254780137|r 199 KFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLE 237 (779)
Q Consensus 199 ~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~ 237 (779)
+..+.-++|.|||.||+.+|..|-..|. ++.++.++
T Consensus 22 ~~~e~DVvIVGaGpsGLtAAy~LAk~g~---Kv~i~E~~ 57 (257)
T PRK04176 22 DYLEVDVAIVGAGPSGLTAAYYLAKAGL---KVAVFERK 57 (257)
T ss_pred HHHHCCEEEECCCCHHHHHHHHHHHCCC---EEEEEECC
T ss_conf 7640688998888279999999986896---59999713
No 260
>PTZ00318 NADH dehydrogenase; Provisional
Probab=80.93 E-value=1.9 Score=22.08 Aligned_cols=37 Identities=19% Similarity=0.190 Sum_probs=28.7
Q ss_pred CCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf 8822411787425425678999999819885758999559
Q gi|254780137|r 198 KKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLE 237 (779)
Q Consensus 198 k~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~ 237 (779)
+.+..-||||.|+|-||+.+++.|.... -+|.++|.+
T Consensus 6 ~~~~KprVVIlGgGfaGl~~ak~L~~~~---~~VtLVdp~ 42 (514)
T PTZ00318 6 HRLLKPNVVVVGTGWAGCYFARHLNPKL---ANLHVLSTR 42 (514)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHCCCC---CCEEEECCC
T ss_conf 6678885899997699999999738689---828999999
No 261
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=80.88 E-value=4 Score=19.92 Aligned_cols=32 Identities=13% Similarity=0.093 Sum_probs=25.6
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEE
Q ss_conf 589469982477404679999998527508999
Q gi|254780137|r 455 TDSKRILFSAGEDERVLRATQILIKENIARPVL 487 (779)
Q Consensus 455 ~~pKRIVfaEgeD~rVLrAA~~~~eeGia~PIL 487 (779)
.+.|||+.. |.-|-=|-||..+...|...-|.
T Consensus 437 ~~GkKVAVI-GsGPAGLsaA~~La~~G~~VtVF 468 (760)
T PRK12778 437 KNGIKVAVI-GSGPAGLSFAGDMAKYGYDVTVF 468 (760)
T ss_pred CCCCEEEEE-CCCHHHHHHHHHHHHCCCEEEEE
T ss_conf 689989998-97789999999999779906998
No 262
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=80.81 E-value=3 Score=20.73 Aligned_cols=36 Identities=28% Similarity=0.522 Sum_probs=31.6
Q ss_pred CHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf 822411787425425678999999819885758999559
Q gi|254780137|r 199 KFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLE 237 (779)
Q Consensus 199 ~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~ 237 (779)
++...||.|.|.|-.|++.+++|.+.|. +++..|.+
T Consensus 2 ~~~~k~v~viGlG~sG~s~a~~L~~~G~---~v~~~D~~ 37 (445)
T PRK04308 2 TFQNKKILVAGLGGTGISMIAYLRKNGA---EVAAYDAE 37 (445)
T ss_pred CCCCCEEEEEEECHHHHHHHHHHHHCCC---EEEEEECC
T ss_conf 9799989999989999999999997899---19999799
No 263
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=80.53 E-value=3.1 Score=20.67 Aligned_cols=36 Identities=25% Similarity=0.242 Sum_probs=28.4
Q ss_pred HHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf 2411787425425678999999819885758999559
Q gi|254780137|r 201 SDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLE 237 (779)
Q Consensus 201 ~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~ 237 (779)
...|||+.|+|.+|+..+..|...- ..-++.++|++
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~-~~~~itLVd~~ 37 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKL-PDVEITLVDRR 37 (405)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-CCCEEEEEECC
T ss_conf 9756999898679999999764167-88718999188
No 264
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=80.51 E-value=3.2 Score=20.55 Aligned_cols=95 Identities=24% Similarity=0.305 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHCCC---CEEEEECCCCEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCC------
Q ss_conf 799999998899888751358---47999817850025422051058300100899998626985265423889------
Q gi|254780137|r 59 AAPSMMIAEDPSKAAMYTNRS---NLVAVVSNGSAVLGLGDIGPLASKPVMEGKAVLFKKFAGINVFDIEINAK------ 129 (779)
Q Consensus 59 a~~~~~i~~~~~~~~~~t~~~---n~vaVvtdGt~vLGLGdiG~~a~~pvmeGK~~L~k~~agid~~~i~~~~~------ 129 (779)
|-|-...++|--.+|---+|= .+|- |-||.-+ .+|- ||+=|.|-+.+
T Consensus 58 aGPhtQlaQNiv~s~~~G~Rf~ElKTvQ-~~d~~el----------~kPC-------------I~a~de~yN~EWStEl~ 113 (1012)
T TIGR03315 58 AGPHTQLAQNIVASYLTGGRFFELKTVQ-VLDGLDL----------PKPC-------------IDAADECYNVEWSTELT 113 (1012)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEEEE-EECCCCC----------CCCC-------------CCCCCCEEEEECCCCCC
T ss_conf 8955899999999997456157877667-6044436----------7776-------------36566234102130002
Q ss_pred ---CHHHHHHHH---HHHCCCC-------------CEEEHHHCCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf ---889999999---8708884-------------60622206480157999999987189421687
Q gi|254780137|r 130 ---DVDTMVSTI---VALEPTF-------------GGINLEDIKAPECFEVERILSQKLKIPFLHDD 177 (779)
Q Consensus 130 ---d~~e~i~~v---~~~~p~f-------------g~i~lEDi~~p~~f~i~~~l~~~~~ipvf~DD 177 (779)
--||.|.+- +.++-.| -|-+||-|++|.-=...+-+++.-+-|+|..=
T Consensus 114 v~~a~~EYikaw~~l~~l~~~~~~~~~~~f~fnmSvGYdl~GIks~kv~~fi~~m~das~~~~~~~~ 180 (1012)
T TIGR03315 114 VPEAYDEYVKAWFLLHLLEKEFELGDPRGFMFNMSVGYDLAGIKSPKVDRYIEEMQDASGTPIFAEC 180 (1012)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 0788999999999999999970888877617973313174545766689999986633157699999
No 265
>pfam02558 ApbA Ketopantoate reductase PanE/ApbA. This is a family of 2-dehydropantoate 2-reductases also known as ketopantoate reductases, EC:1.1.1.169. The reaction catalysed by this enzyme is: (R)-pantoate + NADP(+) <= 2-dehydropantoate + NADPH. AbpA catalyses the NADPH reduction of ketopantoic acid to pantoic acid in the alternative pyrimidine biosynthetic (APB) pathway. ApbA and PanE are allelic. ApbA, the ketopantoate reductase enzyme is required for the synthesis of thiamine via the APB biosynthetic pathway.
Probab=80.46 E-value=3.6 Score=20.17 Aligned_cols=96 Identities=19% Similarity=0.134 Sum_probs=50.7
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCC---HHHHHHHHCCCCCCHHHHCCCCCEEEECCCCC
Q ss_conf 787425425678999999819885758999559603078733266---78897745088988888605883786257887
Q gi|254780137|r 205 IVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFD---KWKSVYAQKSGPKPLSETMNNADVFLGLSVAG 281 (779)
Q Consensus 205 iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~---~~~~~~a~~~~~~~l~ea~~~adv~iG~S~~g 281 (779)
|.+.|||+=|.-++-.|...|. ++++++|..-+-.=+.+.+. ................+.....|+++=+....
T Consensus 1 I~IiGaGaiG~~~a~~L~~ag~---~V~lv~R~~~~~~i~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa~ 77 (150)
T pfam02558 1 IAILGAGAVGSLYGARLARAGH---DVTLIARGRHLEAIRENGLRITSPGGERTVPPPVATSASEELGPADLVIVAVKAY 77 (150)
T ss_pred CEEECCCHHHHHHHHHHHHCCC---EEEEEECCCHHHHHHHCCEEEEECCCCEEEECCEECCCHHHCCCCCEEEEEECCC
T ss_conf 9999668999999999997799---2899975636788774976999479838980741038657658867999972245
Q ss_pred CCCHHHHHHC----CCCCEEEEECCCC
Q ss_conf 7898899721----8997799917872
Q gi|254780137|r 282 ALDPAILKFM----AEKPLIMVLANPN 304 (779)
Q Consensus 282 ~~t~e~v~~M----~~~PiIfaLsNP~ 304 (779)
. +++.++.+ .++..|..|-|=-
T Consensus 78 ~-~~~al~~l~~~l~~~t~iv~lqNG~ 103 (150)
T pfam02558 78 Q-TAEALEDLAPLLGPNTVVLLLQNGL 103 (150)
T ss_pred C-HHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 8-8999999886528883899942587
No 266
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=80.44 E-value=3.1 Score=20.60 Aligned_cols=46 Identities=22% Similarity=0.281 Sum_probs=34.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCC---EEECCCCCCCCHH
Q ss_conf 117874254256789999998198857589995596---0307873326678
Q gi|254780137|r 203 IKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEG---LVYEGREKKFDKW 251 (779)
Q Consensus 203 ~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~G---li~~~r~~~~~~~ 251 (779)
..|+|.|||-+|+..+.+|...|+ .+.++|++. +....|...+++.
T Consensus 3 t~V~IVGaGP~GL~LA~lLar~GI---~~vVlEr~~~~~v~~~~RA~~l~~~ 51 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAGI---DSVVLERRSREYVLGRIRAGVLEQG 51 (392)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCC---CEEEEECCCCCCCCCCCCEEEECHH
T ss_conf 889999977999999999997799---8899976899776788765310889
No 267
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=80.36 E-value=4.1 Score=19.80 Aligned_cols=37 Identities=24% Similarity=0.277 Sum_probs=20.9
Q ss_pred CEEEEE--CCC----HHHHHHHHHHHHCCCCCCCEEEEECCCEEE
Q ss_conf 117874--254----256789999998198857589995596030
Q gi|254780137|r 203 IKIVTL--GAG----AAALACLNLLVTMGVRRENIWVYDLEGLVY 241 (779)
Q Consensus 203 ~~iv~~--GaG----aAg~~~a~ll~~~g~~~~~i~~~D~~Gli~ 241 (779)
-||+|+ +.| +|+-++.+.+...+.. .+.++|--+..+
T Consensus 5 kKVLILtas~G~GH~~AA~AL~e~l~~~~~~--~v~v~D~~~~~~ 47 (388)
T PRK13609 5 PKVLILTAHYGNGHVQVAKTLEQTFRQKGIK--DVIVCDLFGESH 47 (388)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHCCCC--EEEEEEHHHHCC
T ss_conf 9799997888827899999999999835998--199985143027
No 268
>PRK07574 formate dehydrogenase; Provisional
Probab=80.34 E-value=4.1 Score=19.79 Aligned_cols=254 Identities=16% Similarity=0.150 Sum_probs=135.4
Q ss_pred HHHCCHHHHHHHHHHHHHHHHH-HHHCCCCEEEEECCCCEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCC--
Q ss_conf 4307305799999998899888-7513584799981785002542205105830010089999862698526542388--
Q gi|254780137|r 52 LAYSPGVAAPSMMIAEDPSKAA-MYTNRSNLVAVVSNGSAVLGLGDIGPLASKPVMEGKAVLFKKFAGINVFDIEINA-- 128 (779)
Q Consensus 52 ~~ytpgva~~~~~i~~~~~~~~-~~t~~~n~vaVvtdGt~vLGLGdiG~~a~~pvmeGK~~L~k~~agid~~~i~~~~-- 128 (779)
+-++||----|.+ +..... -+-++|....|-||- =|| -+.+=|.+.|-|++ |.+
T Consensus 43 ~~~~p~~llg~~~---~elglr~~le~~gh~~v~t~dk--------~g~---------~~~~~~~l~da~iv---is~pf 99 (385)
T PRK07574 43 IDFTPGELLGSVS---GELGLRTFLEERGHELVVTSDK--------DGP---------DSVFERELPDADVV---ISQPF 99 (385)
T ss_pred CCCCCCCEEEECC---CHHHHHHHHHHCCCEEEEECCC--------CCC---------CCHHHHHCCCCEEE---ECCCC
T ss_conf 8998762122233---3010588898559169996588--------898---------50677515776399---74588
Q ss_pred ---CCHHHHHHHHHHHCC-CCCEEEHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHH---HHHHHHHHHHH------
Q ss_conf ---988999999987088-84606222064801579999999871894216877218999---99999999997------
Q gi|254780137|r 129 ---KDVDTMVSTIVALEP-TFGGINLEDIKAPECFEVERILSQKLKIPFLHDDQHGTAVT---VTAATLNGMKL------ 195 (779)
Q Consensus 129 ---~d~~e~i~~v~~~~p-~fg~i~lEDi~~p~~f~i~~~l~~~~~ipvf~DD~qGTa~v---~lA~llnAl~~------ 195 (779)
-=.-|.|+.-+.+-- .-.||-...|- ++..++ .+|.|.|=-=-.+-.| +++-+|+..|-
T Consensus 100 ~p~ylT~E~IekApnLKli~tAGVG~DnID-------L~AA~e-rGI~V~nvpG~Ns~SVAEhtv~liLal~R~i~~~~~ 171 (385)
T PRK07574 100 WPAYLTAERIAKAPNLKLAITAGIGSDHVD-------LQAASE-HNITVAEVTGSNSISVAEHVVMMILALVRNYLPSHR 171 (385)
T ss_pred CCCCCCHHHHHCCCCCEEEEEEEECCCHHH-------HHHHHH-CCCEEEECCCCCHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 732114999943886739999420472454-------998997-899999599987199999999999999758888999
Q ss_pred ---H-----------CCCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCCCC
Q ss_conf ---0-----------98822411787425425678999999819885758999559603078733266788977450889
Q gi|254780137|r 196 ---V-----------GKKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKSGP 261 (779)
Q Consensus 196 ---~-----------gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~~~ 261 (779)
. +..|+.-++-+.|.|.=|-.+++.+..+|+ ++...|... +.+....-...+-.
T Consensus 172 ~v~~G~W~~a~~~~~~~EL~GKTlGIVG~GrIG~~VArra~aFgm---~Vl~yDp~~---------l~~~~e~~lg~~~~ 239 (385)
T PRK07574 172 QVVDGGWNIADCVSRSYDLEGMTVGTVGAGRIGLAVLRRLKPFDV---TLHYTDRHR---------LPAEVEQELGLTYH 239 (385)
T ss_pred HHHCCCCCHHHCCCCCEECCCCEEEEECCCHHHHHHHHHHHHCCC---EEEEECCCC---------CCHHHHHHCCCCCC
T ss_conf 998499851212566432689989998978899999999997799---899858866---------98899997198656
Q ss_pred CCHHHHCCCCCEEEE-CC----CCCCCCHHHHHHCCCCCEEEEECCCCCCCCHHH-HHH-HCCCEEECCC-C--------
Q ss_conf 888886058837862-57----887789889972189977999178720099889-985-1898798058-8--------
Q gi|254780137|r 262 KPLSETMNNADVFLG-LS----VAGALDPAILKFMAEKPLIMVLANPNPEAMPDE-IKK-VRPDAMICTG-R-------- 325 (779)
Q Consensus 262 ~~l~ea~~~adv~iG-~S----~~g~~t~e~v~~M~~~PiIfaLsNP~pEi~p~~-a~~-~~g~aivatG-r-------- 325 (779)
.+|.|.++.+|++.- +. ..+.|..+.++.|-+..++--.|-=. =|..+. +.. ..| .|-+-| -
T Consensus 240 ~sldeLl~~sDvVslh~PLt~eT~~Lin~~~l~~MK~ga~LVNtARG~-iVDe~AL~~AL~sG-~i~gaglDV~~~EP~p 317 (385)
T PRK07574 240 PDVDSLVSVCDVVTIHCPLHPETEHLFDKDVLSRMKRGSYLVNTARGK-IVDRDAVVEALESG-HLAGYAGDVWFPQPAP 317 (385)
T ss_pred CCHHHHHHHCCEEEECCCCCHHHHHHCCHHHHHCCCCCCEEEECCCCH-HCCHHHHHHHHHCC-CCEEEEECCCCCCCCC
T ss_conf 899999862896998667985774010299994389981899888611-01999999999729-8049996789988998
Q ss_pred CCCC-CCCCHHHHHHHHHHHHHHCCC
Q ss_conf 7887-743503455665456751373
Q gi|254780137|r 326 SDFS-NQVNNVLCFPYIFRGALDCGA 350 (779)
Q Consensus 326 s~~p-nQ~NN~l~FPgif~Gal~~~A 350 (779)
.|+| -+..|+..-|-|.=-.+++++
T Consensus 318 ~dhPl~~lpNv~lTPHiaG~t~~Aq~ 343 (385)
T PRK07574 318 ADHPWRTMPRNAMTPHISGTTLSAQA 343 (385)
T ss_pred CCCCHHCCCCCEECCCCCCCCHHHHH
T ss_conf 99802229961688854548699999
No 269
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=80.32 E-value=3.1 Score=20.62 Aligned_cols=33 Identities=18% Similarity=0.209 Sum_probs=29.0
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCE
Q ss_conf 178742542567899999981988575899955960
Q gi|254780137|r 204 KIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGL 239 (779)
Q Consensus 204 ~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gl 239 (779)
-|+|.|+|..|+++|-.|...|. ++.++|+..+
T Consensus 5 DVvVIGaGi~G~s~A~~La~~G~---~V~vle~~~~ 37 (377)
T PRK11259 5 DVIVIGLGSMGSAAGYYLARAGL---RVLGIDRFMP 37 (377)
T ss_pred EEEEECCCHHHHHHHHHHHHCCC---CEEEECCCCC
T ss_conf 89999952999999999997899---5999928998
No 270
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=80.25 E-value=4.1 Score=19.78 Aligned_cols=51 Identities=20% Similarity=0.292 Sum_probs=37.1
Q ss_pred HHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECC---CEEECCCCCCCCHHHHH
Q ss_conf 2411787425425678999999819885758999559---60307873326678897
Q gi|254780137|r 201 SDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLE---GLVYEGREKKFDKWKSV 254 (779)
Q Consensus 201 ~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~---Gli~~~r~~~~~~~~~~ 254 (779)
-|--|+|.|||-+|...|-.|...|. ++.++|++ .....+|...+++.-..
T Consensus 16 ~d~DV~IVGaGp~Gl~lAl~La~~Gi---~v~viE~~~~~~~~~~~ra~~l~~~s~~ 69 (413)
T PRK07364 16 LDYDVVIVGGGIVGLTLAAALKDSGL---RIALIEAQPAEAAVAKGQAYALSLLSAR 69 (413)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCC---CEEEEECCCCCCCCCCCCEEEECHHHHH
T ss_conf 98998999927999999999986899---8899917997666788738995899999
No 271
>PRK07045 putative monooxygenase; Reviewed
Probab=80.08 E-value=3.1 Score=20.62 Aligned_cols=48 Identities=17% Similarity=0.197 Sum_probs=34.8
Q ss_pred HHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEE-CCCCCCCCHH
Q ss_conf 24117874254256789999998198857589995596030-7873326678
Q gi|254780137|r 201 SDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVY-EGREKKFDKW 251 (779)
Q Consensus 201 ~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~-~~r~~~~~~~ 251 (779)
+..+|+|.|||-+|...|-.|...|. ++.++++.--.. .++...+.+.
T Consensus 4 ~~~dVlIvGaG~aGl~lA~~L~r~G~---~v~v~E~~~~~~~~~~~~~l~p~ 52 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGARGH---SVTVVERAARNRAQNGADLLKPS 52 (388)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCC---CEEEEECCCCCCCCCCEEEECHH
T ss_conf 99858999928899999999986799---89999089987777863488999
No 272
>PRK06475 salicylate hydroxylase; Provisional
Probab=80.06 E-value=3.2 Score=20.55 Aligned_cols=37 Identities=24% Similarity=0.234 Sum_probs=31.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEEC
Q ss_conf 1178742542567899999981988575899955960307
Q gi|254780137|r 203 IKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYE 242 (779)
Q Consensus 203 ~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~ 242 (779)
..|+|.|||-+|+.+|-.|...|. ++.++++..-+..
T Consensus 3 ~~VlIVGaGiaGL~~A~~L~~~G~---~v~V~E~~~~~~~ 39 (400)
T PRK06475 3 GSILIAGAGVAGLSAALELAARGW---AVTIIEKAQELSE 39 (400)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCC---CEEEECCCCCCCC
T ss_conf 979998958899999999997899---9999917998888
No 273
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=79.69 E-value=3.5 Score=20.29 Aligned_cols=33 Identities=21% Similarity=0.276 Sum_probs=28.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCC
Q ss_conf 117874254256789999998198857589995596
Q gi|254780137|r 203 IKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEG 238 (779)
Q Consensus 203 ~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~G 238 (779)
.||++.|+|.||...|..+.+.|. ++.++++.-
T Consensus 1 ~~vvVIG~GpaG~~aA~~aa~~G~---kV~lIEk~~ 33 (458)
T PRK06912 1 SKLVIIGGGPAGYVAAITAAQNGK---EVTLIDEAD 33 (458)
T ss_pred CEEEEEEECHHHHHHHHHHHHCCC---EEEEEECCC
T ss_conf 949999008899999999997859---599995899
No 274
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=79.65 E-value=3.5 Score=20.30 Aligned_cols=33 Identities=24% Similarity=0.406 Sum_probs=29.5
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCE
Q ss_conf 178742542567899999981988575899955960
Q gi|254780137|r 204 KIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGL 239 (779)
Q Consensus 204 ~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gl 239 (779)
+|+|.|||-.|+++|-.|.+.|. ++.++|+...
T Consensus 3 ~V~VIGaGivGlstA~~La~~G~---~VtviDr~~~ 35 (410)
T PRK12409 3 HIAVIGAGITGVTTAYALAQRGY---QVTVFDRHRY 35 (410)
T ss_pred CEEEECCHHHHHHHHHHHHHCCC---CEEEEECCCC
T ss_conf 59998983999999999997899---1899969899
No 275
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=79.60 E-value=3.3 Score=20.48 Aligned_cols=34 Identities=21% Similarity=0.204 Sum_probs=29.4
Q ss_pred HCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCC
Q ss_conf 4117874254256789999998198857589995596
Q gi|254780137|r 202 DIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEG 238 (779)
Q Consensus 202 ~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~G 238 (779)
...|+|.|+|-+|..+|-.|...|. ++.++|+.-
T Consensus 5 ~~DV~IvG~G~vGl~lAl~La~~G~---~V~viE~~~ 38 (391)
T PRK08020 5 PTEIAIVGGGMVGGALALGLAQHGF---SVAVIEHAA 38 (391)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCC---CEEEEECCC
T ss_conf 9848999936999999999986699---789994899
No 276
>pfam02737 3HCDH_N 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain. This family also includes lambda crystallin.
Probab=79.52 E-value=3.4 Score=20.34 Aligned_cols=146 Identities=17% Similarity=0.186 Sum_probs=70.7
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEE-ECCCCCCCCHHHHHH---------------HHCCCCCCHHHH
Q ss_conf 1787425425678999999819885758999559603-078733266788977---------------450889888886
Q gi|254780137|r 204 KIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLV-YEGREKKFDKWKSVY---------------AQKSGPKPLSET 267 (779)
Q Consensus 204 ~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli-~~~r~~~~~~~~~~~---------------a~~~~~~~l~ea 267 (779)
||.+.|||.-|.++|-++...|. +++++|..--. ...+. ........+ .+-+-..++.+
T Consensus 1 kV~ViGaG~mG~~iA~~~a~~G~---~V~l~D~~~~~l~~~~~-~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~l~~- 75 (180)
T pfam02737 1 KVAVIGAGTMGAGIAQVFARAGL---EVVLVDISEEALEKARA-RIEKSLARLVEKGRLTEEDVDAVLARISFTTDLAD- 75 (180)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC---EEEEEECCHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHH-
T ss_conf 98999978899999999996799---39999799899999999-99998999997256756769999852410588999-
Q ss_pred CCCCCEEEECCCC-CCCCHHHHHHC---CCCCEEEEECCCCCCCCHHHHHH--HCCCEEECCCCCCCCCCCCHHHHHHHH
Q ss_conf 0588378625788-77898899721---89977999178720099889985--189879805887887743503455665
Q gi|254780137|r 268 MNNADVFLGLSVA-GALDPAILKFM---AEKPLIMVLANPNPEAMPDEIKK--VRPDAMICTGRSDFSNQVNNVLCFPYI 341 (779)
Q Consensus 268 ~~~adv~iG~S~~-g~~t~e~v~~M---~~~PiIfaLsNP~pEi~p~~a~~--~~g~aivatGrs~~pnQ~NN~l~FPgi 341 (779)
+.++|+.+=.-.- -..+.++.+.+ ++...||+ || |+-+...+... .++..+++.- .+.|--...
T Consensus 76 ~~~adlViEav~E~l~iK~~l~~~l~~~~~~~~Ila-Sn-TS~l~is~la~~~~~p~R~ig~H-ffnP~~~~p------- 145 (180)
T pfam02737 76 AVDADLVIEAVPENLDLKRELFAELDAIAPPDAILA-SN-TSSLSITELAAATKRPERFIGLH-FFNPPPLMP------- 145 (180)
T ss_pred HCCCCEEEECCCCCHHHHHHHHHHHHHHCHHHEEEE-EC-CCCCCHHHHHHHCCCCCEEEEEC-CCCCCCCCC-------
T ss_conf 758999999251768899999999997430330887-52-67689999997479876699975-688777685-------
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf 45675137300267899999999998
Q gi|254780137|r 342 FRGALDCGATAITEEMKVAAARAMAV 367 (779)
Q Consensus 342 f~Gal~~~A~~Itd~M~~aAa~alA~ 367 (779)
.+.+-...=|+.-.+..+..++.
T Consensus 146 ---LVEIv~g~~T~~~~~~~~~~~~~ 168 (180)
T pfam02737 146 ---LVEVVRGEKTSPETVATVVELAK 168 (180)
T ss_pred ---EEEECCCCCCCHHHHHHHHHHHH
T ss_conf ---38883899989999999999999
No 277
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=79.51 E-value=4.4 Score=19.62 Aligned_cols=35 Identities=31% Similarity=0.492 Sum_probs=30.6
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEE
Q ss_conf 1787425425678999999819885758999559603
Q gi|254780137|r 204 KIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLV 240 (779)
Q Consensus 204 ~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli 240 (779)
||.+.|||.=|.-+++.|..+|+. +|.++|.+-+=
T Consensus 1 KVlvvGaGglGce~~k~La~~Gvg--~i~iiD~D~Ie 35 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFG--QIHVIDMDTID 35 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCC--EEEEECCCEEC
T ss_conf 989994888799999999983998--69997599005
No 278
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=79.51 E-value=3.6 Score=20.15 Aligned_cols=37 Identities=19% Similarity=0.270 Sum_probs=24.7
Q ss_pred HHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEE
Q ss_conf 2411787425425678999999819885758999559603
Q gi|254780137|r 201 SDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLV 240 (779)
Q Consensus 201 ~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli 240 (779)
+|.-|||.|+|.||+..|--....|. ++.++++.+.+
T Consensus 4 ee~DVVVVGaG~AGl~AAi~Aae~Ga---~VivlEK~~~~ 40 (560)
T PRK07843 4 QEYDVVVVGSGAAGMVAALTAAHRGL---STVVVEKAPHY 40 (560)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCC---CEEEEECCCCC
T ss_conf 66578998967899999999998899---88999699997
No 279
>PRK01747 mnmC 5-methylaminomethyl-2-thiouridine methyltransferase; Reviewed
Probab=79.35 E-value=3.5 Score=20.28 Aligned_cols=35 Identities=20% Similarity=0.299 Sum_probs=27.6
Q ss_pred HHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCC
Q ss_conf 24117874254256789999998198857589995596
Q gi|254780137|r 201 SDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEG 238 (779)
Q Consensus 201 ~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~G 238 (779)
...+|+|.|||-||.++|.-|...|. ++.++|+..
T Consensus 255 ~~~~VaVIGAGIAGas~A~~LA~rG~---~VtVlDr~~ 289 (660)
T PRK01747 255 RNRDAAIIGGGIAGAALALALARRGW---QVTLYEADE 289 (660)
T ss_pred CCCCEEEECCHHHHHHHHHHHHHCCC---EEEEEECCC
T ss_conf 88718998938999999999997899---689994798
No 280
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=79.34 E-value=2.8 Score=20.90 Aligned_cols=42 Identities=19% Similarity=0.274 Sum_probs=36.7
Q ss_pred CCCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEE
Q ss_conf 98822411787425425678999999819885758999559603
Q gi|254780137|r 197 GKKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLV 240 (779)
Q Consensus 197 gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli 240 (779)
-++|...||++.|+|.-|.-+++-|+-+|+. ++.++|.+-+-
T Consensus 14 q~kl~~s~Vli~G~~glg~Ei~Knlvl~Gv~--~i~i~D~~~v~ 55 (286)
T cd01491 14 MKKLQKSNVLISGLGGLGVEIAKNLILAGVK--SVTLHDTKPCS 55 (286)
T ss_pred HHHHHHCCEEEECCCHHHHHHHHHHHHCCCC--EEEEEECCCCC
T ss_conf 9999759299999876399999999973996--59999599688
No 281
>PRK13018 cell division protein FtsZ; Provisional
Probab=79.31 E-value=4.4 Score=19.58 Aligned_cols=94 Identities=20% Similarity=0.276 Sum_probs=59.6
Q ss_pred HHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCC------------E----EECCCCCCCCHHHHHHHHCCCCCC
Q ss_conf 224117874254256789999998198857589995596------------0----307873326678897745088988
Q gi|254780137|r 200 FSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEG------------L----VYEGREKKFDKWKSVYAQKSGPKP 263 (779)
Q Consensus 200 l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~G------------l----i~~~r~~~~~~~~~~~a~~~~~~~ 263 (779)
....||.+.|-|-+|.-..+.+...++.--.+|.++.+- + +|+|....-+|..-+-|-......
T Consensus 25 ~~~~kIkViGvGG~G~Navn~M~~~gi~gVefia~NTD~Q~L~~s~a~~ki~lG~~~T~GLGAG~~PeiG~~AAees~~~ 104 (387)
T PRK13018 25 FGGPKIKVVGVGGAGNNTVNRLYDIGIEGAETIAINTDAQHLAMIKADKKILIGKTLTRGLGAGGDPEVGRKAAEESRDE 104 (387)
T ss_pred CCCCCEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 79986899976886399999999839998349998165999836999827985776578899988838999999982999
Q ss_pred HHHHCCCCCE-EEECC-CCCCCC--HHHHHHCCC
Q ss_conf 8886058837-86257-887789--889972189
Q gi|254780137|r 264 LSETMNNADV-FLGLS-VAGALD--PAILKFMAE 293 (779)
Q Consensus 264 l~ea~~~adv-~iG~S-~~g~~t--~e~v~~M~~ 293 (779)
+.++++++|+ ||-.. ++|.=| -.+|...|+
T Consensus 105 I~~~l~g~DmVFItAGmGGGTGTGAAPVIA~iAk 138 (387)
T PRK13018 105 IKEVLKGADLVFVTAGMGGGTGTGAAPVVAEIAK 138 (387)
T ss_pred HHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHH
T ss_conf 9999758986999953478513777899999999
No 282
>KOG1399 consensus
Probab=79.15 E-value=3.1 Score=20.62 Aligned_cols=28 Identities=29% Similarity=0.383 Sum_probs=24.1
Q ss_pred HHCEEEEECCCHHHHHHHHHHHHCCCCC
Q ss_conf 2411787425425678999999819885
Q gi|254780137|r 201 SDIKIVTLGAGAAALACLNLLVTMGVRR 228 (779)
Q Consensus 201 ~~~~iv~~GaGaAg~~~a~ll~~~g~~~ 228 (779)
...++++.|||+||++.++-+...|...
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v 32 (448)
T KOG1399 5 MSKDVAVIGAGPAGLAAARELLREGHEV 32 (448)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCC
T ss_conf 7785489785668889999998779983
No 283
>pfam00070 Pyr_redox Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.
Probab=79.01 E-value=4.4 Score=19.60 Aligned_cols=37 Identities=22% Similarity=0.423 Sum_probs=31.2
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECC
Q ss_conf 1787425425678999999819885758999559603078
Q gi|254780137|r 204 KIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEG 243 (779)
Q Consensus 204 ~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~ 243 (779)
|+++.|+|.-|+=+|..|..+|. +++++++..-+-..
T Consensus 1 rv~iiGgG~ig~E~A~~l~~~G~---~Vtiie~~~~~l~~ 37 (82)
T pfam00070 1 RVVVVGGGYIGLEFASALAKLGS---KVTVVERRDRLLRG 37 (82)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC---EEEEECCCCCCCHH
T ss_conf 99999988999999999986392---78998125733022
No 284
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=78.84 E-value=2.8 Score=20.91 Aligned_cols=42 Identities=17% Similarity=0.356 Sum_probs=36.5
Q ss_pred CHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEEC
Q ss_conf 82241178742542567899999981988575899955960307
Q gi|254780137|r 199 KFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYE 242 (779)
Q Consensus 199 ~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~ 242 (779)
+|++++|+++|.|--|--+++.|.+.|+. +|.++|-+-+-.+
T Consensus 27 kl~~~~V~VvGiGGVGSw~veALaRsGig--~itlID~D~v~vT 68 (263)
T COG1179 27 KLKQAHVCVVGIGGVGSWAVEALARSGIG--RITLIDMDDVCVT 68 (263)
T ss_pred HHHCCCEEEEECCCHHHHHHHHHHHCCCC--EEEEEECHHCCCC
T ss_conf 97509489994584539999999981888--1899712010222
No 285
>PRK07538 hypothetical protein; Provisional
Probab=78.83 E-value=3.8 Score=20.04 Aligned_cols=34 Identities=21% Similarity=0.350 Sum_probs=29.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCE
Q ss_conf 1178742542567899999981988575899955960
Q gi|254780137|r 203 IKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGL 239 (779)
Q Consensus 203 ~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gl 239 (779)
.||+|.|||-+|+..|-+|...|. ++.++++.--
T Consensus 1 m~V~IvGaG~aGL~lA~~L~~~Gi---~v~V~E~~~~ 34 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGI---EVEVFEAAPE 34 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC---CEEEECCCCC
T ss_conf 989999905899999999997899---9899936998
No 286
>PRK08618 ornithine cyclodeaminase; Validated
Probab=78.81 E-value=4.6 Score=19.48 Aligned_cols=116 Identities=18% Similarity=0.265 Sum_probs=69.7
Q ss_pred HHHHHCCCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCCC-----CCCHHH
Q ss_conf 999709882241178742542567899999981988575899955960307873326678897745088-----988888
Q gi|254780137|r 192 GMKLVGKKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKSG-----PKPLSE 266 (779)
Q Consensus 192 Al~~~gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~~-----~~~l~e 266 (779)
|.+..-++-. .++.++|+|.=+-.-++.+.... .-+++++.|+ +. +....+..++....+ ..+.++
T Consensus 118 a~~~La~~~a-~~l~iiGaG~QA~~~~~a~~~v~-~i~~v~v~~r----~~---~~~~~f~~~~~~~~g~~v~~~~~~~~ 188 (325)
T PRK08618 118 ATKYLAREDA-KTLCLIGTGGQAKGQLEAVLAVR-DIEKVRVYSR----TF---EKAYAFAQEIQSKFNTEIYVVESADE 188 (325)
T ss_pred HHHHHCCCCC-CEEEEECCHHHHHHHHHHHHHCC-CCCEEEEEEC----CH---HHHHHHHHHHHHHCCCCEEEECCHHH
T ss_conf 9997547898-56999756079999999998608-9668999947----99---99999999998750996699589999
Q ss_pred HCCCCCEEEECCC--CCCCCHHHHHHCCCCCEEEEECCCCC---CCCHHHHHHHCCCEEEC
Q ss_conf 6058837862578--87789889972189977999178720---09988998518987980
Q gi|254780137|r 267 TMNNADVFLGLSV--AGALDPAILKFMAEKPLIMVLANPNP---EAMPDEIKKVRPDAMIC 322 (779)
Q Consensus 267 a~~~adv~iG~S~--~g~~t~e~v~~M~~~PiIfaLsNP~p---Ei~p~~a~~~~g~aiva 322 (779)
++.++||++.++. .-+|..+ ++ +.-.|-+...-+| |++++... +.+.++.
T Consensus 189 av~~aDiV~taT~s~~Pv~~~~-l~---~g~hi~aiGs~~p~~~El~~~~l~--~a~~vvv 243 (325)
T PRK08618 189 AIEEADIIVTVTNAKTPVFSEK-LK---KGVHINAVGSFRPDMQEIPSEAIA--RADKVVV 243 (325)
T ss_pred HHHHCCEEEEECCCCCCCCCCC-CC---CCEEECCCCCCCCCCCCCCHHHHH--HCCEEEE
T ss_conf 9843988999259998644543-58---871751324689863457899995--1998999
No 287
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=78.80 E-value=4 Score=19.91 Aligned_cols=38 Identities=18% Similarity=0.290 Sum_probs=33.7
Q ss_pred HHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEE
Q ss_conf 24117874254256789999998198857589995596030
Q gi|254780137|r 201 SDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVY 241 (779)
Q Consensus 201 ~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~ 241 (779)
...+|||.|+|-+|..+|-.|...|. ++.++|++.+-.
T Consensus 3 ~~~~vvIIGgGi~Gls~A~~La~~G~---~V~vie~~~~~~ 40 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGA---DVTVLEAGEAGG 40 (387)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC---EEEEEECCCCCC
T ss_conf 76439998986999999999997699---199991798876
No 288
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=78.78 E-value=3.9 Score=19.92 Aligned_cols=36 Identities=19% Similarity=0.294 Sum_probs=31.3
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEE
Q ss_conf 17874254256789999998198857589995596030
Q gi|254780137|r 204 KIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVY 241 (779)
Q Consensus 204 ~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~ 241 (779)
||++.|+|+=|.-+++.|...|+. ++.++|-.-+=.
T Consensus 1 kVlivG~GglG~~va~~L~~~Gv~--~i~ivD~D~v~~ 36 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVG--KITLIDFDTVEL 36 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHHCCC--CEEEEECCCCCC
T ss_conf 999999798999999999993797--199997898750
No 289
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=78.61 E-value=4 Score=19.91 Aligned_cols=95 Identities=22% Similarity=0.307 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHCCC---CEEEEECCCCEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCC------
Q ss_conf 799999998899888751358---47999817850025422051058300100899998626985265423889------
Q gi|254780137|r 59 AAPSMMIAEDPSKAAMYTNRS---NLVAVVSNGSAVLGLGDIGPLASKPVMEGKAVLFKKFAGINVFDIEINAK------ 129 (779)
Q Consensus 59 a~~~~~i~~~~~~~~~~t~~~---n~vaVvtdGt~vLGLGdiG~~a~~pvmeGK~~L~k~~agid~~~i~~~~~------ 129 (779)
|-|-...++|--.+|---+|= .+|- |-||.-+ .+|- ||+=|.|-|.+
T Consensus 59 aGPhtQlaQNiv~syl~G~Rf~ElKTvQ-~~d~~ei----------~kPC-------------I~a~de~yN~EWStEl~ 114 (1032)
T PRK09853 59 AGPHTQLAQNIVTSYLTGGRFIELKTVQ-ILDRLEL----------EKPC-------------IDAEDECFNTEWSTEFT 114 (1032)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEEEE-EECCCCC----------CCCC-------------CCCCCCEEEEECCCEEC
T ss_conf 8954899999999997456157877677-6144436----------7776-------------36566234102130012
Q ss_pred ---CHHHHHHHHHH---H----C---C--CC-----CEEEHHHCCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf ---88999999987---0----8---8--84-----60622206480157999999987189421687
Q gi|254780137|r 130 ---DVDTMVSTIVA---L----E---P--TF-----GGINLEDIKAPECFEVERILSQKLKIPFLHDD 177 (779)
Q Consensus 130 ---d~~e~i~~v~~---~----~---p--~f-----g~i~lEDi~~p~~f~i~~~l~~~~~ipvf~DD 177 (779)
--||.|.+--. + . + .| -|-+||-|++|.-=...+-+++.-+-|+|..=
T Consensus 115 v~~a~~EYikaw~~l~~l~~~~~~~~~~~~f~fnmSVGYdl~GIks~kv~~fi~~m~das~~~~~~~~ 182 (1032)
T PRK09853 115 LLKAYDEYLKAWFALHLLEKEFQPSDEGKSFIFNMSVGYDLEGIKSPPMQQFIDNMMDASDHPIFAEY 182 (1032)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 07889999999999999999848888787459974312074545766689999986633147799999
No 290
>PRK08013 hypothetical protein; Provisional
Probab=78.36 E-value=3.6 Score=20.21 Aligned_cols=36 Identities=19% Similarity=0.302 Sum_probs=30.9
Q ss_pred HHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCC
Q ss_conf 224117874254256789999998198857589995596
Q gi|254780137|r 200 FSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEG 238 (779)
Q Consensus 200 l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~G 238 (779)
|++.-|+|.|+|-+|...|-.|...|. ++.++|++.
T Consensus 1 M~~~DV~IvGaGpvGl~lA~~La~~G~---~v~viE~~~ 36 (400)
T PRK08013 1 MQSVDVAIVGGGMVGLAVACGLQGSGL---RVAVLEHRV 36 (400)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCC---CEEEEECCC
T ss_conf 996788999935999999999971899---589991899
No 291
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=78.34 E-value=4.7 Score=19.38 Aligned_cols=82 Identities=18% Similarity=0.212 Sum_probs=48.8
Q ss_pred CEEEEECCCHHHHH-HHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHC---CCCCCHHHHCCCCCEEEECC
Q ss_conf 11787425425678-999999819885758999559603078733266788977450---88988888605883786257
Q gi|254780137|r 203 IKIVTLGAGAAALA-CLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQK---SGPKPLSETMNNADVFLGLS 278 (779)
Q Consensus 203 ~~iv~~GaGaAg~~-~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~---~~~~~l~ea~~~adv~iG~S 278 (779)
-||-|.|.|-+|++ +|++|...|. ++...|.+ . .+..+...+. ...+.-.+.++++|+++-.+
T Consensus 9 k~ih~iGigG~GmsalA~~l~~~G~---~V~gsD~~----~------~~~~~~L~~~Gi~v~~g~~~~~l~~~d~vV~Sp 75 (459)
T PRK00421 9 KRIHFVGIGGIGMSGLAEVLLNLGY---KVSGSDLK----E------SAVTQRLLELGAIIFIGHDAENIKGADVVVVSS 75 (459)
T ss_pred CEEEEEEECHHHHHHHHHHHHHCCC---EEEEECCC----C------CHHHHHHHHCCCEEECCCCHHHCCCCCEEEECC
T ss_conf 8899998668889999999996899---39998898----9------978999997879997798979879999999899
Q ss_pred CCCCCCHHHHHHCCCC-CEE
Q ss_conf 8877898899721899-779
Q gi|254780137|r 279 VAGALDPAILKFMAEK-PLI 297 (779)
Q Consensus 279 ~~g~~t~e~v~~M~~~-PiI 297 (779)
+=..=.+++.+..... ||+
T Consensus 76 ~I~~~~p~~~~a~~~gi~v~ 95 (459)
T PRK00421 76 AIKPDNPELVAARELGIPVV 95 (459)
T ss_pred CCCCCCHHHHHHHHCCCCEE
T ss_conf 85998999999998799798
No 292
>PRK06184 hypothetical protein; Provisional
Probab=78.31 E-value=4.7 Score=19.38 Aligned_cols=52 Identities=17% Similarity=0.254 Sum_probs=38.9
Q ss_pred HHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEEC-CCCCCCCHHHHHH
Q ss_conf 241178742542567899999981988575899955960307-8733266788977
Q gi|254780137|r 201 SDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYE-GREKKFDKWKSVY 255 (779)
Q Consensus 201 ~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~-~r~~~~~~~~~~~ 255 (779)
.+.-|+|.|||-+|+.+|-+|...|+ ++.++|++--.+. .|...+++.-.++
T Consensus 5 ~tTDVlIVGaGPvGL~lA~~La~~Gi---~v~viEr~~~~~~~~RA~~l~~rt~ei 57 (503)
T PRK06184 5 TTTDVLIVGAGPTGLTLAIELARRGV---SFRLIEKSPTPFRGSRGKGIQPRTQEV 57 (503)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCC---CEEEEECCCCCCCCCCEEEECHHHHHH
T ss_conf 85798999909999999999997799---899994899988688589878999999
No 293
>PRK09330 cell division protein FtsZ; Validated
Probab=77.63 E-value=4.9 Score=19.25 Aligned_cols=92 Identities=15% Similarity=0.224 Sum_probs=57.0
Q ss_pred HCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCC----------------EEECCCCCCCCHHHHHHHHCCCCCCHH
Q ss_conf 4117874254256789999998198857589995596----------------030787332667889774508898888
Q gi|254780137|r 202 DIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEG----------------LVYEGREKKFDKWKSVYAQKSGPKPLS 265 (779)
Q Consensus 202 ~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~G----------------li~~~r~~~~~~~~~~~a~~~~~~~l~ 265 (779)
..||-++|-|-+|.-..+.+...++.-=.|+.++.+- -+|+|...+-+|..-+-|-......+.
T Consensus 12 ~a~IkViGvGG~G~Navn~m~~~~i~gv~fia~NTD~q~L~~s~a~~ki~lG~~~T~GlGAG~~Pe~G~~AA~es~~~I~ 91 (387)
T PRK09330 12 GAVIKVIGVGGGGGNAVNRMIEEGIQGVEFIAANTDAQALLKSKAPVKIQLGEKLTRGLGAGANPEVGRKAAEESREEIR 91 (387)
T ss_pred CCEEEEEEECCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 97289996688638999999985998707999826099984599982597077756888888781788999999999999
Q ss_pred HHCCCCC-EEEECC-CCCCCC--HHHHHHCCC
Q ss_conf 8605883-786257-887789--889972189
Q gi|254780137|r 266 ETMNNAD-VFLGLS-VAGALD--PAILKFMAE 293 (779)
Q Consensus 266 ea~~~ad-v~iG~S-~~g~~t--~e~v~~M~~ 293 (779)
++++++| |||-.. ++|.=| -.+|...|+
T Consensus 92 ~~l~g~dmvFItAGmGGGTGTGAaPviA~iAk 123 (387)
T PRK09330 92 EALEGADMVFITAGMGGGTGTGAAPVVAEIAK 123 (387)
T ss_pred HHHCCCCEEEEECCCCCCCCCCHHHHHHHHHH
T ss_conf 99778987999626678877760489999885
No 294
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=77.56 E-value=3.8 Score=20.07 Aligned_cols=90 Identities=17% Similarity=0.145 Sum_probs=50.9
Q ss_pred HHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHH-CCCCCC-HHHHCCCCCEEEEC
Q ss_conf 2241178742542567899999981988575899955960307873326678897745-088988-88860588378625
Q gi|254780137|r 200 FSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQ-KSGPKP-LSETMNNADVFLGL 277 (779)
Q Consensus 200 l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~-~~~~~~-l~ea~~~adv~iG~ 277 (779)
.++.+.++.|.|-.|++++++|.+.|. +++..|.+-- ....+..+..+.. ....+. -.+.+..+|.++-.
T Consensus 5 ~~~~~~LV~G~G~sG~s~a~~L~~~G~---~V~~~D~~~~-----~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vv~S 76 (448)
T PRK03803 5 ASDGLRIVVGLGKSGMSLVRFLARQGY---QFAVTDTREN-----PPELATLRRDYPQVEVRCGELDAEFLCQAEEIIVS 76 (448)
T ss_pred ECCCCEEEEEECHHHHHHHHHHHHCCC---EEEEEECCCC-----CHHHHHHHHHCCCCEEEECCCCHHHHCCCCEEEEC
T ss_conf 059958999989999999999997889---5999918999-----16799999747997799788897780789999989
Q ss_pred CCCCCCCHHHHHHCCC-CCEE
Q ss_conf 7887789889972189-9779
Q gi|254780137|r 278 SVAGALDPAILKFMAE-KPLI 297 (779)
Q Consensus 278 S~~g~~t~e~v~~M~~-~PiI 297 (779)
.+=..-.+++.+.... -||+
T Consensus 77 PgI~~~~p~~~~a~~~~i~i~ 97 (448)
T PRK03803 77 PGLALATPALQAAAAAGIKIS 97 (448)
T ss_pred CCCCCCCHHHHHHHHCCCCEE
T ss_conf 972999999999998599683
No 295
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=77.51 E-value=3.7 Score=20.14 Aligned_cols=56 Identities=16% Similarity=0.250 Sum_probs=28.4
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEE--CC-----HHHHHHHHHHCCCCCCCCCCCEEECCC
Q ss_conf 894699824774046799999985275089995--59-----899999999849876654684230620
Q gi|254780137|r 456 DSKRILFSAGEDERVLRATQILIKENIARPVLI--GS-----LLTIQDNIRRHDLQIIATKDFDVIDLN 517 (779)
Q Consensus 456 ~pKRIVfaEgeD~rVLrAA~~~~eeGia~PILV--G~-----~e~I~~~~~~~gL~l~~~~dieIidp~ 517 (779)
..||++.. |+-..++-.+..+.|.|+- |+.+ +. ++.|++.+++... ..+.++++..
T Consensus 302 ~gkrvai~-g~~~~~~~l~~~l~elG~~-~~~vv~~~~~~~~~~~i~~~~~~~~~----~~~~~v~~~~ 364 (435)
T cd01974 302 HGKKFALY-GDPDFLIGLTSFLLELGME-PVHVLTGNGGKRFEKEMQALLDASPY----GAGAKVYPGK 364 (435)
T ss_pred CCCEEEEE-CCHHHHHHHHHHHHHCCCE-EEEEEECCCCHHHHHHHHHHHHHCCC----CCCCEEEECC
T ss_conf 29679998-8828999999999988997-89999799977899999999862567----8886799589
No 296
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=77.49 E-value=5 Score=19.22 Aligned_cols=57 Identities=21% Similarity=0.273 Sum_probs=43.1
Q ss_pred HCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECC--CEEECCCCCCCCHHHHHHHHCCCC
Q ss_conf 411787425425678999999819885758999559--603078733266788977450889
Q gi|254780137|r 202 DIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLE--GLVYEGREKKFDKWKSVYAQKSGP 261 (779)
Q Consensus 202 ~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~--Gli~~~r~~~~~~~~~~~a~~~~~ 261 (779)
...|+|.|||-+|...|-.|...|. ++.++++. .+...+|...+.+.....-+....
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~---~V~liE~~~~~~~~~~r~~~l~~~~~~~L~~lG~ 60 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGL---DVTLLERAPRELLERGRGIALSPNALRALERLGL 60 (387)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC---CEEEEECCCCCCCCCCEEEEECHHHHHHHHHCCC
T ss_conf 8549999978999999999982899---6899907761135575599989899999998499
No 297
>pfam03486 HI0933_like HI0933-like protein.
Probab=77.47 E-value=4.2 Score=19.72 Aligned_cols=32 Identities=19% Similarity=0.320 Sum_probs=27.4
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCC
Q ss_conf 17874254256789999998198857589995596
Q gi|254780137|r 204 KIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEG 238 (779)
Q Consensus 204 ~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~G 238 (779)
.|+|.|+|+||+-+|-.+...|. ++.++++..
T Consensus 2 Dv~VIGgGaaGl~aAi~aa~~g~---~V~ilEk~~ 33 (405)
T pfam03486 2 DVIVIGGGAAGLMAAISAAKRGR---RVLLIEKGK 33 (405)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC---EEEEEECCC
T ss_conf 79999966999999999986899---599995899
No 298
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=77.24 E-value=4.3 Score=19.63 Aligned_cols=35 Identities=17% Similarity=0.172 Sum_probs=30.2
Q ss_pred HHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf 22411787425425678999999819885758999559
Q gi|254780137|r 200 FSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLE 237 (779)
Q Consensus 200 l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~ 237 (779)
|.+..|+|.|+|-+|...|-.|...|. ++.++|++
T Consensus 1 M~~~DV~IvGaG~vGl~lAl~La~~G~---~V~iiE~~ 35 (384)
T PRK08849 1 MNKYDIAVVGGGMVGAATAIGFAKQGR---SVAVIEGF 35 (384)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCC---CEEEEECC
T ss_conf 981899999924999999999995799---59999689
No 299
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=77.12 E-value=5.1 Score=19.15 Aligned_cols=57 Identities=18% Similarity=0.186 Sum_probs=28.3
Q ss_pred CCCCCHHHHHHHHH--HHHHHHHCCCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEEC
Q ss_conf 87721899999999--99999709882241178742542567899999981988575899955
Q gi|254780137|r 176 DDQHGTAVTVTAAT--LNGMKLVGKKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDL 236 (779)
Q Consensus 176 DD~qGTa~v~lA~l--lnAl~~~gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~ 236 (779)
-|-..-|-+..||+ .+|||..+.+ ...++.+.|+|.-|.-...+...+|. +++.+|+
T Consensus 140 ~d~~~aApllCaGiT~y~alk~~~~~-pG~~V~I~G~GGlGh~avQ~Aka~ga---~Via~~~ 198 (339)
T COG1064 140 LDLAEAAPLLCAGITTYRALKKANVK-PGKWVAVVGAGGLGHMAVQYAKAMGA---EVIAITR 198 (339)
T ss_pred CCHHHHHHHHCCEEEEEEEHHHCCCC-CCCEEEEECCCHHHHHHHHHHHHCCC---EEEEEEC
T ss_conf 98666115436700576004653899-99899998774899999999998699---6999957
No 300
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=77.04 E-value=4.3 Score=19.68 Aligned_cols=32 Identities=22% Similarity=0.340 Sum_probs=27.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf 11787425425678999999819885758999559
Q gi|254780137|r 203 IKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLE 237 (779)
Q Consensus 203 ~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~ 237 (779)
--++|.|||-||.++|-.|.+.|. ++.++++.
T Consensus 6 fDVIVVGAGPAGsaAA~~LA~~Gl---~VllLEKg 37 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAREGA---QVLVIERG 37 (428)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCC---EEEEEECC
T ss_conf 778999968899999999987899---09999678
No 301
>PRK08244 hypothetical protein; Provisional
Probab=76.93 E-value=5.2 Score=19.12 Aligned_cols=53 Identities=13% Similarity=0.126 Sum_probs=37.9
Q ss_pred HCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEE-ECCCCCCCCHHHHHHHH
Q ss_conf 411787425425678999999819885758999559603-07873326678897745
Q gi|254780137|r 202 DIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLV-YEGREKKFDKWKSVYAQ 257 (779)
Q Consensus 202 ~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli-~~~r~~~~~~~~~~~a~ 257 (779)
+.-|+|.|+|-+|+.+|-+|...|+ ++.++|++--. ...|...+++...++-+
T Consensus 2 ~tDVlIVGaGPvGL~lAl~La~~Gv---~v~vvEr~~~~~~~~RA~~l~~rt~eil~ 55 (494)
T PRK08244 2 KTDVIIIGGGPVGLMLASELALAGV---RTCVIERLKEPVPYSKALTLHPRTLELLE 55 (494)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCC---CEEEEECCCCCCCCCCEEECCHHHHHHHH
T ss_conf 9899999947899999999997799---99999089998889987460899999999
No 302
>KOG2018 consensus
Probab=76.89 E-value=3.1 Score=20.62 Aligned_cols=40 Identities=28% Similarity=0.518 Sum_probs=33.2
Q ss_pred CCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCE
Q ss_conf 882241178742542567899999981988575899955960
Q gi|254780137|r 198 KKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGL 239 (779)
Q Consensus 198 k~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gl 239 (779)
.++..+-||+.|||.-|--++.||..-|+. .|.++|-.-+
T Consensus 70 ~kl~~syVVVVG~GgVGSwv~nmL~RSG~q--Ki~iVDfdqV 109 (430)
T KOG2018 70 EKLTNSYVVVVGAGGVGSWVANMLLRSGVQ--KIRIVDFDQV 109 (430)
T ss_pred HHHCCCEEEEEECCCHHHHHHHHHHHHCCC--EEEEECHHHC
T ss_conf 874176799991685229999999982686--3899531014
No 303
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=76.78 E-value=5.2 Score=19.09 Aligned_cols=200 Identities=20% Similarity=0.258 Sum_probs=114.3
Q ss_pred CCCCHHHHHHH-HCCHHHHHHHHHHHHHHHHHH----HHCCCCEEEEE----CCCCEE---CCCCCCCCCCCCCHHHHHH
Q ss_conf 34885572143-073057999999988998887----51358479998----178500---2542205105830010089
Q gi|254780137|r 43 MLNDQKDLSLA-YSPGVAAPSMMIAEDPSKAAM----YTNRSNLVAVV----SNGSAV---LGLGDIGPLASKPVMEGKA 110 (779)
Q Consensus 43 ~~~~~~dl~~~-ytpgva~~~~~i~~~~~~~~~----~t~~~n~vaVv----tdGt~v---LGLGdiG~~a~~pvmeGK~ 110 (779)
.+..++-|++. |||.=-.--...+..-...+. +..+|..+|.| |--||+ .|.-++|.++
T Consensus 3 ~~~~rhfL~l~D~t~~El~~ll~~A~~lK~~~~~~~~~~~~gk~laliFeK~STRTR~SFe~a~~qlGg~~--------- 73 (310)
T COG0078 3 NLAGRHFLSLLDFTPEELEALLDLAAELKAAKKAGKELKLKGKNLALIFEKTSTRTRVSFEVAATQLGGHA--------- 73 (310)
T ss_pred CCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCE---------
T ss_conf 66433304052099999999999999998745158742568965999964898404544999999768964---------
Q ss_pred HHHHHHCCCCEEEEECCCCC-----HHHHHHHHHHHCCCCCEEEHHHCCCCHHHHHHHHHHHHHCCCCCC---CCCCCHH
Q ss_conf 99986269852654238898-----899999998708884606222064801579999999871894216---8772189
Q gi|254780137|r 111 VLFKKFAGINVFDIEINAKD-----VDTMVSTIVALEPTFGGINLEDIKAPECFEVERILSQKLKIPFLH---DDQHGTA 182 (779)
Q Consensus 111 ~L~k~~agid~~~i~~~~~d-----~~e~i~~v~~~~p~fg~i~lEDi~~p~~f~i~~~l~~~~~ipvf~---DD~qGTa 182 (779)
+-++.++ -|-+-++.+-+.--+-+|..-.++- +.+++|-+.-.+||+| |+-|=|-
T Consensus 74 -------------~~l~~~~~Qlgr~Esi~DTArVLsr~~D~I~~R~~~~----~~v~~lA~~s~VPViNgLtD~~HP~Q 136 (310)
T COG0078 74 -------------IYLGPGDSQLGRGESIKDTARVLSRMVDAIMIRGFSH----ETLEELAKYSGVPVINGLTDEFHPCQ 136 (310)
T ss_pred -------------EEECCCCCCCCCCCCHHHHHHHHHHHHHEEEEECCCH----HHHHHHHHHCCCCEECCCCCCCCCHH
T ss_conf -------------8708875526789967889999985502577853548----99999997279966725456668189
Q ss_pred HHHHHHHHHHHHHHCCCHHHCEEEEECCCHHHHHHHHHHH--HCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCCC
Q ss_conf 9999999999997098822411787425425678999999--81988575899955960307873326678897745088
Q gi|254780137|r 183 VTVTAATLNGMKLVGKKFSDIKIVTLGAGAAALACLNLLV--TMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKSG 260 (779)
Q Consensus 183 ~v~lA~llnAl~~~gk~l~~~~iv~~GaGaAg~~~a~ll~--~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~~ 260 (779)
+ ||-++.-.+--|+ ++..|+++.|-| -.++-.-++. .+|. ++.++--+|+--. ++ .-.+.+..|..+.
T Consensus 137 ~--LADl~Ti~E~~g~-l~g~k~a~vGDg-NNv~~Sl~~~~a~~G~---dv~ia~P~~~~p~--~~-~~~~a~~~a~~sg 206 (310)
T COG0078 137 A--LADLMTIKEHFGS-LKGLKLAYVGDG-NNVANSLLLAAAKLGM---DVRIATPKGYEPD--PE-VVEKAKENAKESG 206 (310)
T ss_pred H--HHHHHHHHHHCCC-CCCCEEEEECCC-CHHHHHHHHHHHHHCC---EEEEECCCCCCCC--HH-HHHHHHHHHHHCC
T ss_conf 9--9999999996386-668579997676-3699999999998298---6899789867869--89-9999999998539
Q ss_pred -----CCCHHHHCCCCCEEEECC
Q ss_conf -----988888605883786257
Q gi|254780137|r 261 -----PKPLSETMNNADVFLGLS 278 (779)
Q Consensus 261 -----~~~l~ea~~~adv~iG~S 278 (779)
..+..++++||||+..=+
T Consensus 207 ~~i~~t~d~~eAv~gADvvyTDv 229 (310)
T COG0078 207 GKITLTEDPEEAVKGADVVYTDV 229 (310)
T ss_pred CEEEEECCHHHHHCCCCEEEECC
T ss_conf 84898639889857899998367
No 304
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=76.71 E-value=2.4 Score=21.38 Aligned_cols=25 Identities=24% Similarity=0.407 Sum_probs=21.6
Q ss_pred HHCEEEEECCCHHHHHHHHHHHHCC
Q ss_conf 2411787425425678999999819
Q gi|254780137|r 201 SDIKIVTLGAGAAALACLNLLVTMG 225 (779)
Q Consensus 201 ~~~~iv~~GaGaAg~~~a~ll~~~g 225 (779)
+.+||.+.|||+=|++++.++..-+
T Consensus 5 k~~KI~ViGaGawGTALA~~la~n~ 29 (340)
T PRK12439 5 REPKVVVLGGGSWGTTVASICARRG 29 (340)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCC
T ss_conf 8992899896999999999999589
No 305
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=76.70 E-value=4.8 Score=19.30 Aligned_cols=37 Identities=11% Similarity=0.214 Sum_probs=30.7
Q ss_pred HHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEE
Q ss_conf 2411787425425678999999819885758999559603
Q gi|254780137|r 201 SDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLV 240 (779)
Q Consensus 201 ~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli 240 (779)
++--+++.|+|.||..+|..+...|. ++.++|+++.+
T Consensus 2 ~~YDviVIG~GpaG~~aA~~aa~~G~---kValIE~~~~~ 38 (466)
T PRK06115 2 KSYDVVIIGGGPGGYNAAIRAGQLGL---KVACVEGRSTL 38 (466)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCC---CEEEEECCCCC
T ss_conf 84698999978899999999997899---39999679996
No 306
>PRK10015 hypothetical protein; Provisional
Probab=76.59 E-value=4.5 Score=19.52 Aligned_cols=32 Identities=19% Similarity=0.407 Sum_probs=27.5
Q ss_pred HCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEEC
Q ss_conf 41178742542567899999981988575899955
Q gi|254780137|r 202 DIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDL 236 (779)
Q Consensus 202 ~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~ 236 (779)
+--++|.|||-||.++|-.+.+.|. ++.++++
T Consensus 5 ~fDVIVVGaGPAG~sAA~~LAk~Gl---~VlllEr 36 (429)
T PRK10015 5 KFDAIVVGAGVAGSVAALVMARAGL---DVLVIER 36 (429)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCC---CEEEEEC
T ss_conf 1588999968899999999987799---1999967
No 307
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=76.50 E-value=5.3 Score=19.04 Aligned_cols=108 Identities=13% Similarity=0.166 Sum_probs=68.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCCCCCCHHHHCCCCCEEEEC-CCCC
Q ss_conf 117874254256789999998198857589995596030787332667889774508898888860588378625-7887
Q gi|254780137|r 203 IKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKSGPKPLSETMNNADVFLGL-SVAG 281 (779)
Q Consensus 203 ~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~~~~~l~ea~~~adv~iG~-S~~g 281 (779)
.||-|.|-|.=|.++++-|.+.|. .++..|+. . +..++....- -+...+..|+..++|+.+-+ +.+.
T Consensus 2 MkIgfIGlG~MG~~ma~~L~~~G~---~v~v~dr~----~---~~~~~l~~~G--a~~~~s~~e~~~~~dvvi~~l~~~~ 69 (295)
T PRK11559 2 MKVGFIGLGIMGKPMSKNLLKAGY---SLVVYDRN----P---EAIADVIAAG--AETASTAKAIAEQCDVIITMLPNSP 69 (295)
T ss_pred CEEEEECCHHHHHHHHHHHHHCCC---EEEEEECC----H---HHHHHHHHCC--CCCCCCHHHHHHCCCEEEEECCCCC
T ss_conf 789998405769999999997899---58999299----9---9999999859--9203999999843887899668981
Q ss_pred CCCHH-------HHHHCCCCCEEEEECCCCCCCCHHHHHH--HCCCEEECC
Q ss_conf 78988-------9972189977999178720099889985--189879805
Q gi|254780137|r 282 ALDPA-------ILKFMAEKPLIMVLANPNPEAMPDEIKK--VRPDAMICT 323 (779)
Q Consensus 282 ~~t~e-------~v~~M~~~PiIfaLsNP~pEi~p~~a~~--~~g~aivat 323 (779)
.+ ++ ++..+.+.-||.=+|.=.|+.+-+.+.+ ..|...+..
T Consensus 70 ~v-~~v~~g~~gi~~~~~~g~iiid~sT~~p~~~~~~a~~~~~~g~~~lDa 119 (295)
T PRK11559 70 HV-KEVALGENGIIEGAKPGTVLIDMSSIAPLASREISEALKAKGIEMLDA 119 (295)
T ss_pred CH-HHHHHCCCCCHHCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCEEEEC
T ss_conf 07-766307766011389998899899999999999999999659838942
No 308
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=76.47 E-value=5 Score=19.19 Aligned_cols=35 Identities=20% Similarity=0.282 Sum_probs=29.1
Q ss_pred HCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCE
Q ss_conf 41178742542567899999981988575899955960
Q gi|254780137|r 202 DIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGL 239 (779)
Q Consensus 202 ~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gl 239 (779)
+-.+|+.|+|.||..+|..+.++|. ++.++++++.
T Consensus 4 ~yDvvVIGgGpaG~~aA~~aa~~G~---kV~liE~~~~ 38 (472)
T PRK06467 4 KTQVVVLGAGPAGYSAAFRAADLGL---ETVCVERYST 38 (472)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCC---CEEEEECCCC
T ss_conf 7878999988899999999997899---6999963799
No 309
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=76.44 E-value=5.1 Score=19.13 Aligned_cols=34 Identities=29% Similarity=0.523 Sum_probs=29.9
Q ss_pred HHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf 2411787425425678999999819885758999559
Q gi|254780137|r 201 SDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLE 237 (779)
Q Consensus 201 ~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~ 237 (779)
...||.+.|+|-||+++|..|..+|- .+.++++.
T Consensus 192 tGKkVAIIGaGPAGLsaAy~L~~~Gh---~VTVfE~~ 225 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGH---DVTIFDAN 225 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC---EEEEEECC
T ss_conf 89979996837899999999997799---06998158
No 310
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=76.25 E-value=4.5 Score=19.51 Aligned_cols=34 Identities=18% Similarity=0.432 Sum_probs=30.1
Q ss_pred HHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf 2411787425425678999999819885758999559
Q gi|254780137|r 201 SDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLE 237 (779)
Q Consensus 201 ~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~ 237 (779)
...||.+.|+|-||+++|..|...|. ++.++++.
T Consensus 136 tgkkVAVIGaGPAGLsaA~~La~~G~---~VtVfE~~ 169 (560)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYQLRRLGH---AVTIFEAG 169 (560)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC---EEEEECCC
T ss_conf 89989998977899999999997698---58996767
No 311
>PRK08862 short chain dehydrogenase; Provisional
Probab=76.25 E-value=5.1 Score=19.17 Aligned_cols=36 Identities=14% Similarity=0.246 Sum_probs=29.3
Q ss_pred CHHHCEEEEECCCHH-HHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf 822411787425425-678999999819885758999559
Q gi|254780137|r 199 KFSDIKIVTLGAGAA-ALACLNLLVTMGVRRENIWVYDLE 237 (779)
Q Consensus 199 ~l~~~~iv~~GaGaA-g~~~a~ll~~~g~~~~~i~~~D~~ 237 (779)
+|++..+++-||++. |-++++.|.+.|. +++++|++
T Consensus 2 dlk~Kv~lITGas~GIG~aiA~~~A~~Ga---~Vii~~r~ 38 (227)
T PRK08862 2 DIKNSIILITSAGSVLGRTISCHFARLGA---TLILCDQD 38 (227)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEECC
T ss_conf 99999999979887999999999998799---99999699
No 312
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=76.24 E-value=5.1 Score=19.17 Aligned_cols=34 Identities=24% Similarity=0.448 Sum_probs=23.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCE
Q ss_conf 1178742542567899999981988575899955960
Q gi|254780137|r 203 IKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGL 239 (779)
Q Consensus 203 ~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gl 239 (779)
.-|||.|+|.||+.+|-.....|. ++.++++.+.
T Consensus 6 ~DVvVVG~G~AGl~AAi~Aae~Ga---~VillEK~~~ 39 (567)
T PRK12842 6 CDVLVIGSGAAGLSAAITARKLGL---DVVVLEKEPV 39 (567)
T ss_pred ECEEEECCCHHHHHHHHHHHHCCC---CEEEEECCCC
T ss_conf 596998968899999999998799---0899977998
No 313
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=76.18 E-value=5.4 Score=18.98 Aligned_cols=120 Identities=16% Similarity=0.202 Sum_probs=67.5
Q ss_pred CCCCCHHHHHHHHHHHHH-HHHCCCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHH
Q ss_conf 877218999999999999-9709882241178742542567899999981988575899955960307873326678897
Q gi|254780137|r 176 DDQHGTAVTVTAATLNGM-KLVGKKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSV 254 (779)
Q Consensus 176 DD~qGTa~v~lA~llnAl-~~~gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~ 254 (779)
|++++.-+=.++--+++. ...+.+..+ +++++|+|.=|+..+.+...+|.. +++++|. +++.+...++.
T Consensus 143 ~~~~aal~epla~~~~~~a~~~~~~~~~-~V~V~GaGpIGLla~~~a~~~Ga~--~Viv~d~-------~~~Rl~~A~~~ 212 (350)
T COG1063 143 DEEAAALTEPLATAYHGHAERAAVRPGG-TVVVVGAGPIGLLAIALAKLLGAS--VVIVVDR-------SPERLELAKEA 212 (350)
T ss_pred CHHHECCCCCHHHHHHHHHHHCCCCCCC-EEEEECCCHHHHHHHHHHHHCCCC--EEEEECC-------CHHHHHHHHHH
T ss_conf 7553201580998999998424578899-899988889999999999876982--7999799-------98999999987
Q ss_pred HHHC--CCC-C-CHHHHC------CCCCEEEECCCCCCCCHHHHHHCCCCCEEEEECCCCC
Q ss_conf 7450--889-8-888860------5883786257887789889972189977999178720
Q gi|254780137|r 255 YAQK--SGP-K-PLSETM------NNADVFLGLSVAGALDPAILKFMAEKPLIMVLANPNP 305 (779)
Q Consensus 255 ~a~~--~~~-~-~l~ea~------~~adv~iG~S~~g~~t~e~v~~M~~~PiIfaLsNP~p 305 (779)
+.-+ .+. . ...+.+ .++|+.+-+|+....-...++...+.-.|.-++-+-+
T Consensus 213 ~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G~~~~~~~ai~~~r~gG~v~~vGv~~~ 273 (350)
T COG1063 213 GGADVVVNPSEDDAGAEILELTGGRGADVVIEAVGSPPALDQALEALRPGGTVVVVGVYGG 273 (350)
T ss_pred CCCCEEECCCCHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 7971872463014788999860898799999998997999999996025989999951588
No 314
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=76.17 E-value=5.1 Score=19.15 Aligned_cols=29 Identities=17% Similarity=-0.105 Sum_probs=16.7
Q ss_pred CCCCCCCCHHHHHHCCCC-CEEEEECCCCC
Q ss_conf 578877898899721899-77999178720
Q gi|254780137|r 277 LSVAGALDPAILKFMAEK-PLIMVLANPNP 305 (779)
Q Consensus 277 ~S~~g~~t~e~v~~M~~~-PiIfaLsNP~p 305 (779)
.+++=...+||++...+. .-.+.++||..
T Consensus 270 ATGGf~~N~em~~~~~p~~~~~~~~g~p~~ 299 (584)
T PRK12835 270 ASGGFDHDMDWRKEHLPELEKDWSFGNPAN 299 (584)
T ss_pred ECCCCCCCHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 148866699999985711247744589887
No 315
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=76.06 E-value=4.6 Score=19.44 Aligned_cols=32 Identities=22% Similarity=0.314 Sum_probs=28.4
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCE
Q ss_conf 78742542567899999981988575899955960
Q gi|254780137|r 205 IVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGL 239 (779)
Q Consensus 205 iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gl 239 (779)
|+|.|+|-.|.++|-.|.+.|. ++.++|+..+
T Consensus 3 v~VIGaGi~Gls~A~~La~~G~---~V~vle~~~~ 34 (365)
T TIGR03364 3 LIIVGAGILGLAHAYAAARRGL---SVTVIERSSR 34 (365)
T ss_pred EEEECCHHHHHHHHHHHHHCCC---CEEEECCCCC
T ss_conf 9999932999999999997899---4999989999
No 316
>TIGR00692 tdh L-threonine 3-dehydrogenase; InterPro: IPR004627 L-threonine 3-dehydrogenase (1.1.1.103 from EC) is a tetrameric, zinc-binding, NAD-dependent enzyme of threonine catabolism. It catalyses the conversion of L-threonine and NAD+ to L-2-amino-3-oxobutanoate and NADH. In Escherichia coli His-90 modulates substrate specificity and is believed part of the active site. Closely related proteins include sorbitol dehydrogenase, xylitol dehydrogenase, and benzyl alcohol dehydrogenase. Eukaryotic examples of this enzyme have been demonstrated experimentally but are not detected by this HMM. ; GO: 0008270 zinc ion binding, 0008743 L-threonine 3-dehydrogenase activity, 0006567 threonine catabolic process.
Probab=75.85 E-value=5.5 Score=18.92 Aligned_cols=106 Identities=24% Similarity=0.350 Sum_probs=60.0
Q ss_pred HHHHHH-HCCCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCCC--------
Q ss_conf 999997-09882241178742542567899999981988575899955960307873326678897745088--------
Q gi|254780137|r 190 LNGMKL-VGKKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKSG-------- 260 (779)
Q Consensus 190 lnAl~~-~gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~~-------- 260 (779)
=||.+- ..-++.=..+.+.|||-=|+=-+---+..|+. +++..|. |+|..++|+.-.
T Consensus 149 GNAVhTvL~~~~~G~~vlv~GaGPiGlma~AVAKa~GA~--~Vi~~d~------------neyRleLAkk~Gat~~vn~~ 214 (341)
T TIGR00692 149 GNAVHTVLESDLAGEDVLVIGAGPIGLMAVAVAKAAGAR--NVIVIDK------------NEYRLELAKKMGATRVVNVA 214 (341)
T ss_pred CHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHCCC--EEEEECC------------CHHHHHHHHHCCCCEEEECC
T ss_conf 104446525776887189985774789999998772784--0599658------------64799999870986587010
Q ss_pred CCCHHHHC------CCCCEEEECCC-CCCCCHHHHHHCCCCCEEEEECCCCCCCCHH
Q ss_conf 98888860------58837862578-8778988997218997799917872009988
Q gi|254780137|r 261 PKPLSETM------NNADVFLGLSV-AGALDPAILKFMAEKPLIMVLANPNPEAMPD 310 (779)
Q Consensus 261 ~~~l~ea~------~~adv~iG~S~-~g~~t~e~v~~M~~~PiIfaLsNP~pEi~p~ 310 (779)
..++.+.+ .|+||++=.|+ |.+| +.++..|+.--=|-=|+-|...++=|
T Consensus 215 kEd~~k~v~~lt~geG~Dv~lEmSGaP~A~-~~gL~~~~~gGR~~~Lglpp~~vtID 270 (341)
T TIGR00692 215 KEDLVKVVAELTSGEGVDVVLEMSGAPKAL-EQGLDAVANGGRVALLGLPPSDVTID 270 (341)
T ss_pred CCCHHHHHHHHCCCCCEEEEEECCCCCHHH-HHHHHHHCCCCEEEECCCCCCCEEEE
T ss_conf 147689888403889647998648991799-99999850688089813689761263
No 317
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=75.77 E-value=5.5 Score=18.91 Aligned_cols=37 Identities=19% Similarity=0.244 Sum_probs=31.3
Q ss_pred CHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCC
Q ss_conf 8224117874254256789999998198857589995596
Q gi|254780137|r 199 KFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEG 238 (779)
Q Consensus 199 ~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~G 238 (779)
.+.|--+++.|+|.||..+|..+.+.|. ++.++++..
T Consensus 3 ~m~~YDviVIGaGpaG~~aA~~aa~~G~---kV~viE~~~ 39 (465)
T PRK05249 3 HMYDYDAVVIGSGPAGEGAAMQAAKLGK---RVAVIERYR 39 (465)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCC---CEEEEECCC
T ss_conf 8777898999977899999999997899---299997699
No 318
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=75.54 E-value=5.4 Score=18.97 Aligned_cols=34 Identities=24% Similarity=0.365 Sum_probs=29.8
Q ss_pred HHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf 2411787425425678999999819885758999559
Q gi|254780137|r 201 SDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLE 237 (779)
Q Consensus 201 ~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~ 237 (779)
+..-|+|.|||-+|...|-.|...|. ++.++|++
T Consensus 5 ~~~DV~IvGaGp~Gl~lA~~L~~~G~---~v~liE~~ 38 (392)
T PRK08773 5 SRRDAVIVGGGVVGAACALALADAGL---SVALVEGR 38 (392)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCC---CEEEEECC
T ss_conf 99988999906999999999986699---78999178
No 319
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=75.46 E-value=5.6 Score=18.85 Aligned_cols=33 Identities=18% Similarity=0.342 Sum_probs=27.6
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf 1787425425678999999819885758999559
Q gi|254780137|r 204 KIVTLGAGAAALACLNLLVTMGVRRENIWVYDLE 237 (779)
Q Consensus 204 ~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~ 237 (779)
||+|.|||-||+.+|-.|...|... ++.++.+.
T Consensus 2 ~V~VIGaGiaGLsaA~~L~~~G~~~-~VtvlEa~ 34 (452)
T PRK11883 2 RVAIIGGGISGLTAAYRLHKKGPDA-DITLLEAS 34 (452)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCC-CEEEEECC
T ss_conf 5999998789999999999649799-78999889
No 320
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB; InterPro: IPR012730 This entry describes the molybdopterin biosynthesis protein MoeB in Escherichia coli and related species. MoeB and MoaD are involved in molybdenum cofactor biosynthesis, an evolutionarily conserved pathway. The MoeB enzyme covalently modifies the molybdopterin synthase MoaD by sulphurylation. The crystal structure of the complex between the E. coli MoeB and MoaD proteins reveals a MoeB(2)-MoaD(2) heterotetramer in which the MoeB subunits form a mainly hydrophobic dimer . MoeB is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (IPR000594 from INTERPRO). ; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=75.39 E-value=3.5 Score=20.28 Aligned_cols=40 Identities=23% Similarity=0.409 Sum_probs=35.2
Q ss_pred CCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCE
Q ss_conf 882241178742542567899999981988575899955960
Q gi|254780137|r 198 KKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGL 239 (779)
Q Consensus 198 k~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gl 239 (779)
.+|++.|+++.|+|-=|++-...|..+|+. ++.++|-+-+
T Consensus 20 E~LK~s~vLivG~GGLGCAa~QYLa~AGvG--~l~L~DfD~V 59 (240)
T TIGR02355 20 EKLKASKVLIVGLGGLGCAASQYLAAAGVG--RLTLVDFDTV 59 (240)
T ss_pred HHHCCCCEEEEECCHHHHHHHHHHHHCCCC--EEEEEECCEE
T ss_conf 565005677783670345678888643663--2788633710
No 321
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=75.23 E-value=5.7 Score=18.82 Aligned_cols=90 Identities=11% Similarity=0.078 Sum_probs=50.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCC--E--------------EECCCCCCCCHHHHHHHHCCCCCCHHH
Q ss_conf 117874254256789999998198857589995596--0--------------307873326678897745088988888
Q gi|254780137|r 203 IKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEG--L--------------VYEGREKKFDKWKSVYAQKSGPKPLSE 266 (779)
Q Consensus 203 ~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~G--l--------------i~~~r~~~~~~~~~~~a~~~~~~~l~e 266 (779)
.||.+.|-|-||.-+.+-+...+..--.++.+|.+- | +|+++.-.-+|...+.|-......+.+
T Consensus 1 akI~ViGvGGaG~N~v~~m~~~~~~~v~~iaiNTD~~~L~~~~a~~ki~iG~~~t~G~GaG~~pe~G~~aA~e~~~~I~~ 80 (303)
T cd02191 1 AKIAVIGFGGAGGNIVDKFLEYDKEGRSAVAVNTDAQDLLGLEAENRVLIGQARTKGLGAGANPELGAEAAEEVQEAIDN 80 (303)
T ss_pred CCEEEEEECCCHHHHHHHHHHCCCCCEEEEEEECCHHHHHCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 91899987881399999999829997179999576999835999828972766668898988945899999999999999
Q ss_pred HCCCCCEEEECC--CCCCCC--HHHHHHCC
Q ss_conf 605883786257--887789--88997218
Q gi|254780137|r 267 TMNNADVFLGLS--VAGALD--PAILKFMA 292 (779)
Q Consensus 267 a~~~adv~iG~S--~~g~~t--~e~v~~M~ 292 (779)
.++++|+++-+. ++|.=| ..+|...+
T Consensus 81 ~l~~~d~vfi~AGmGGGTGtGaaPviA~~A 110 (303)
T cd02191 81 IPVHVDMVFITAGLGGGTGTGGAPVVAEHL 110 (303)
T ss_pred HHCCCCEEEEEEECCCCCCCCHHHHHHHHH
T ss_conf 865699899998418970042899999999
No 322
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=75.12 E-value=5.7 Score=18.80 Aligned_cols=194 Identities=20% Similarity=0.226 Sum_probs=103.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHCC-CCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCCCCCCHHHHCCCCCEEEECCCCC
Q ss_conf 11787425425678999999819-88575899955960307873326678897745088988888605883786257887
Q gi|254780137|r 203 IKIVTLGAGAAALACLNLLVTMG-VRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKSGPKPLSETMNNADVFLGLSVAG 281 (779)
Q Consensus 203 ~~iv~~GaGaAg~~~a~ll~~~g-~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~~~~~l~ea~~~adv~iG~S~~g 281 (779)
.||.|.|+|.=|-++..-|+..| ...++|+.+|+. .+........|-..+ ..+..+++..+|+++-.-.|-
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~-------~e~~~~l~~~~g~~~-~~~~~~~~~~advv~LavKPq 73 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRS-------EEKRAALAAEYGVVT-TTDNQEAVEEADVVFLAVKPQ 73 (266)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCC-------HHHHHHHHHHCCCCC-CCCHHHHHHHCCEEEEEECHH
T ss_conf 658998468899999999996689980238983799-------999999999849855-686798874089899984827
Q ss_pred CCCHHHHHHCC---CCCEEEEECCCCC--------------CCCHHHHHH-HCCCEEECCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 78988997218---9977999178720--------------099889985-18987980588788774350345566545
Q gi|254780137|r 282 ALDPAILKFMA---EKPLIMVLANPNP--------------EAMPDEIKK-VRPDAMICTGRSDFSNQVNNVLCFPYIFR 343 (779)
Q Consensus 282 ~~t~e~v~~M~---~~PiIfaLsNP~p--------------Ei~p~~a~~-~~g~aivatGrs~~pnQ~NN~l~FPgif~ 343 (779)
.+ +++++... ++.+|.-++=..+ .++|.-... ..|-..+.-+..-.+.+..-+ -.||.
T Consensus 74 ~~-~~vl~~l~~~~~~~lvISiaAGv~~~~l~~~l~~~~vvR~MPNt~a~vg~g~t~i~~~~~~~~~~~~~v---~~l~~ 149 (266)
T COG0345 74 DL-EEVLSKLKPLTKDKLVISIAAGVSIETLERLLGGLRVVRVMPNTPALVGAGVTAISANANVSEEDKAFV---EALLS 149 (266)
T ss_pred HH-HHHHHHHHCCCCCCEEEEEECCCCHHHHHHHCCCCCEEEECCCHHHHHCCCCEEEECCCCCCHHHHHHH---HHHHH
T ss_conf 68-999997323568887999707997999998748996699678858897175226513765898899999---99998
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 67513730026789999999999872033136677413876766675223666546778679888899987421322354
Q gi|254780137|r 344 GALDCGATAITEEMKVAAARAMAVLVRDVPPDVVFDNFAKESPVFGPNYLIPSPFDPNLISYIAPAVAKAAEEAGVASSP 423 (779)
Q Consensus 344 Gal~~~A~~Itd~M~~aAa~alA~la~~~~~~~~~~~~~~~~~~~g~~yiiP~~fd~r~~~~va~AVa~aA~~sGvAr~p 423 (779)
- + -..-.|. |=.+-|+-++++. ||-| +..+..|-++++.+.|+.|.
T Consensus 150 ~-~-G~v~~v~-E~~~da~TaisGS--------------------gPAy----------v~~~iEal~~agv~~Gl~~~- 195 (266)
T COG0345 150 A-V-GKVVEVE-ESLMDAVTALSGS--------------------GPAY----------VFLFIEALADAGVRLGLPRE- 195 (266)
T ss_pred H-C-CCEEEEC-HHHHHHHHHHHCC--------------------CHHH----------HHHHHHHHHHHHHHCCCCHH-
T ss_conf 2-5-9869964-6771499998448--------------------6899----------99999999999998599999-
Q ss_pred CCCHHHHHHHHHHHHCCHHHHHH
Q ss_conf 32258999999986201256889
Q gi|254780137|r 424 IEDYEVYRDSLKRFSFPGRSLMK 446 (779)
Q Consensus 424 i~d~~~Y~~~L~~rl~~s~~~mr 446 (779)
++|+--.....+-...+.+
T Consensus 196 ----~A~~l~~~t~~Gaakll~e 214 (266)
T COG0345 196 ----EARELAAQTVAGAAKLLLE 214 (266)
T ss_pred ----HHHHHHHHHHHHHHHHHHH
T ss_conf ----9999999999999999986
No 323
>PRK08132 hypothetical protein; Provisional
Probab=75.12 E-value=5.5 Score=18.91 Aligned_cols=51 Identities=25% Similarity=0.257 Sum_probs=37.1
Q ss_pred HHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEE-CCCCCCCCHHHH
Q ss_conf 224117874254256789999998198857589995596030-787332667889
Q gi|254780137|r 200 FSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVY-EGREKKFDKWKS 253 (779)
Q Consensus 200 l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~-~~r~~~~~~~~~ 253 (779)
-.+.-|+|.|||-.|+..+-+|...|+ ++.++|++--.+ ..|...+++.-.
T Consensus 21 p~~tpVlIVGaGPvGL~lA~~L~~~Gv---~~~vvEr~~~~~~~pRA~~~~~rtm 72 (549)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQQGV---PVVLLDDDDTLSTGSRAICFSKRSL 72 (549)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCC---CEEEEECCCCCCCCCCEEEECHHHH
T ss_conf 886999999925799999999998799---9999959999999997888898999
No 324
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=75.11 E-value=5.7 Score=18.80 Aligned_cols=104 Identities=16% Similarity=0.188 Sum_probs=58.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEE-CCCCC------------CCCH--HHHHHHHCCCCCCHHHH
Q ss_conf 117874254256789999998198857589995596030-78733------------2667--88977450889888886
Q gi|254780137|r 203 IKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVY-EGREK------------KFDK--WKSVYAQKSGPKPLSET 267 (779)
Q Consensus 203 ~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~-~~r~~------------~~~~--~~~~~a~~~~~~~l~ea 267 (779)
.||.+.|||.-|.|+|-++...|. +++++|..--.. +.+.. .++. .....++-+...++.++
T Consensus 3 ~~VaViGaG~mG~giA~~~a~~G~---~V~l~D~~~~~l~~a~~~i~~~l~~~~~~g~~~~~~~~~~~~ri~~~~~l~~a 79 (308)
T PRK06129 3 GSIAIVGAGLIGRAWAIVFARAGH---RVRLWDADPAALAAAPAYIAGRLEDLAAFDLLDGESPDAVLARIRATDSLADA 79 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC---CEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCEEECCCHHHH
T ss_conf 879997778999999999985899---38999898899999999999999999976999876599998350722888998
Q ss_pred CCCCCEEEECCC-CCCCCHHHHHHC---CCCCEEEEECCCCCCCCHHH
Q ss_conf 058837862578-877898899721---89977999178720099889
Q gi|254780137|r 268 MNNADVFLGLSV-AGALDPAILKFM---AEKPLIMVLANPNPEAMPDE 311 (779)
Q Consensus 268 ~~~adv~iG~S~-~g~~t~e~v~~M---~~~PiIfaLsNP~pEi~p~~ 311 (779)
+.++|+.+=.-. -=-+++++.+.. ++.-.||+- -|+-+.+.+
T Consensus 80 l~~adlViEav~E~l~iK~~lf~~le~~~~~~~IlaS--nTSsl~is~ 125 (308)
T PRK06129 80 VADADYVQESAPENLELKRALFAELDALAPPHAILAS--STSALLASA 125 (308)
T ss_pred HCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEE--CCCCCCHHH
T ss_conf 4749999999807799999999999965698558984--555388999
No 325
>TIGR00137 gid gid protein; InterPro: IPR004417 The gid proteins are present in relatively few bacteria but very tightly conserved where they occur. The function of these proteins is unknown. They are closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae..
Probab=75.05 E-value=2.6 Score=21.13 Aligned_cols=183 Identities=22% Similarity=0.267 Sum_probs=96.6
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHH--HHHHHHCC--C----------CCCHHH--
Q ss_conf 1178742542567899999981988575899955960307873326678--89774508--8----------988888--
Q gi|254780137|r 203 IKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKW--KSVYAQKS--G----------PKPLSE-- 266 (779)
Q Consensus 203 ~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~--~~~~a~~~--~----------~~~l~e-- 266 (779)
++|.+.|+|=||.=-|.+|-..|++ +.+ |+=|+..+.|. -..+|+-. | .+-|.+
T Consensus 1 ~~v~VIGgGLAGsEAAWqlA~~G~~---ViL-------yEMRP~k~tPAH~t~~lAELVCSNslg~~~l~~aaGlLk~Em 70 (444)
T TIGR00137 1 EKVIVIGGGLAGSEAAWQLAKEGVR---VIL-------YEMRPKKLTPAHHTEDLAELVCSNSLGAKELARAAGLLKEEM 70 (444)
T ss_pred CEEEEECCCCHHHHHHHHHHHCCCC---EEE-------EECCCCCCCCCCCCCCCEEEEECCHHCCCCCCCCCCHHHHHH
T ss_conf 9368971885346899999848972---799-------753876577876666602232021011010120123689998
Q ss_pred -----HC-CCCCEE----EE-CCC-CCCCCHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHCCCEEECCCCCCCC----C
Q ss_conf -----60-588378----62-578-87789889972189977999178720099889985189879805887887----7
Q gi|254780137|r 267 -----TM-NNADVF----LG-LSV-AGALDPAILKFMAEKPLIMVLANPNPEAMPDEIKKVRPDAMICTGRSDFS----N 330 (779)
Q Consensus 267 -----a~-~~adv~----iG-~S~-~g~~t~e~v~~M~~~PiIfaLsNP~pEi~p~~a~~~~g~aivatGrs~~p----n 330 (779)
+| .-||.. .| +.+ .+.|++.+-.....||-|=-.-.=..||+-++ -.|+||| |-.- .
T Consensus 71 r~L~SliI~aAd~~~VPAGGALaVDR~iFs~s~Te~v~sHPnv~lireEV~EIPe~~------~tviaTG-PLTS~aLse 143 (444)
T TIGR00137 71 RKLDSLIIEAADEAAVPAGGALAVDRKIFSESVTEKVKSHPNVTLIREEVTEIPEEE------VTVIATG-PLTSEALSE 143 (444)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCEEEECCCC------EEEEECC-CCCCHHHHH
T ss_conf 863079998765336898852011278999988776412884588716400515997------0798638-888278899
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 43503455665456751373002678999999999987203313667741387676667522366654677867988889
Q gi|254780137|r 331 QVNNVLCFPYIFRGALDCGATAITEEMKVAAARAMAVLVRDVPPDVVFDNFAKESPVFGPNYLIPSPFDPNLISYIAPAV 410 (779)
Q Consensus 331 Q~NN~l~FPgif~Gal~~~A~~Itd~M~~aAa~alA~la~~~~~~~~~~~~~~~~~~~g~~yiiP~~fd~r~~~~va~AV 410 (779)
|+-..-+.-|+. ==.|+|=.+..+.-| ...+|.+.+-.=|.+--+=+||...=..+.-.|-
T Consensus 144 ~lkeltG~dyLy------------------FyDAaaPIVe~dS~d-~~k~f~~SRYdKGeaaYlNCp~teEey~~F~eaL 204 (444)
T TIGR00137 144 KLKELTGEDYLY------------------FYDAAAPIVEKDSVD-KEKAFLASRYDKGEAAYLNCPLTEEEYKKFYEAL 204 (444)
T ss_pred HHHHHHCCHHHH------------------HHHHCCCEEHHCCCC-CCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 998750630244------------------553005400000045-2211010235776555326777745677899999
Q ss_pred HHHHHHCCCCCCCCCCH
Q ss_conf 99874213223543225
Q gi|254780137|r 411 AKAAEEAGVASSPIEDY 427 (779)
Q Consensus 411 a~aA~~sGvAr~pi~d~ 427 (779)
.+|= +.|+.||
T Consensus 205 ~~AE------~vplKdF 215 (444)
T TIGR00137 205 LEAE------KVPLKDF 215 (444)
T ss_pred HHHC------CCCCCCC
T ss_conf 8734------7889877
No 326
>PRK07608 hypothetical protein; Provisional
Probab=75.05 E-value=5.4 Score=19.00 Aligned_cols=34 Identities=12% Similarity=0.261 Sum_probs=29.2
Q ss_pred HCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCC
Q ss_conf 4117874254256789999998198857589995596
Q gi|254780137|r 202 DIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEG 238 (779)
Q Consensus 202 ~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~G 238 (779)
+.-|+|.|||-+|...|-.|...|. ++.++|++-
T Consensus 5 ~~DV~IvGaGp~Gl~lA~~La~~G~---~v~viE~~~ 38 (389)
T PRK07608 5 KFDVAVVGGGLVGKSLALALAQSGL---RVALLEAQP 38 (389)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCC---CEEEEECCC
T ss_conf 9988999906899999999983799---889995899
No 327
>PRK03379 vitamin B12-transporter protein BtuF; Provisional
Probab=75.05 E-value=5.8 Score=18.79 Aligned_cols=54 Identities=19% Similarity=0.210 Sum_probs=31.3
Q ss_pred HHHHHHCCCCCEEEHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 9998708884606222064801579999999871894216877218999999999999970988
Q gi|254780137|r 136 STIVALEPTFGGINLEDIKAPECFEVERILSQKLKIPFLHDDQHGTAVTVTAATLNGMKLVGKK 199 (779)
Q Consensus 136 ~~v~~~~p~fg~i~lEDi~~p~~f~i~~~l~~~~~ipvf~DD~qGTa~v~lA~llnAl~~~gk~ 199 (779)
|.+-++.|.. .|-++.. +|. ...++|++ +.||||.-|.+ ++..+.+.++..|+-
T Consensus 71 E~IlaL~PDL-Via~~~~-~~~--~~~~~L~~-~GI~v~~~~~~-----sl~di~~~i~~lG~~ 124 (265)
T PRK03379 71 ERIVALKPDL-VLAWRGG-NAE--RQVDQLAS-LGIKVMWVDAT-----SIEQIADALRQLAPW 124 (265)
T ss_pred HHHHHHCCCE-EEEECCC-CCH--HHHHHHHH-CCCEEEECCCC-----CHHHHHHHHHHHHHH
T ss_conf 9999639998-9995688-958--99999981-69758835999-----999999999999986
No 328
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=75.04 E-value=5.8 Score=18.78 Aligned_cols=32 Identities=19% Similarity=0.402 Sum_probs=28.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf 11787425425678999999819885758999559
Q gi|254780137|r 203 IKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLE 237 (779)
Q Consensus 203 ~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~ 237 (779)
.||.+.|||.=|.+||-++...|. +++++|..
T Consensus 3 ~kV~ViGaG~mG~~IA~~~a~~G~---~V~l~D~~ 34 (284)
T PRK07819 3 QRVGVVGAGQMGSGIAEVCARAGV---DVLVFETT 34 (284)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC---EEEEEECC
T ss_conf 679998977899999999995799---08999798
No 329
>KOG2250 consensus
Probab=74.94 E-value=5.8 Score=18.77 Aligned_cols=227 Identities=19% Similarity=0.131 Sum_probs=123.8
Q ss_pred HHHHHC-CCCEEEEECCCCEECCCCCCCCCC-CC---CH---HHHHHHH----HH-HHCCCC----EEEEECCCC--CHH
Q ss_conf 887513-584799981785002542205105-83---00---1008999----98-626985----265423889--889
Q gi|254780137|r 72 AAMYTN-RSNLVAVVSNGSAVLGLGDIGPLA-SK---PV---MEGKAVL----FK-KFAGIN----VFDIEINAK--DVD 132 (779)
Q Consensus 72 ~~~~t~-~~n~vaVvtdGt~vLGLGdiG~~a-~~---pv---meGK~~L----~k-~~agid----~~~i~~~~~--d~~ 132 (779)
.++||+ +-|---+|-+|=|+--.--.||.- |+ |= -|=|++= || ++.||+ -=-||+|-+ .-+
T Consensus 79 ~~~~p~~~d~G~~~V~~gfRvqh~~argP~KGGIR~hpsvn~d~~k~La~~~t~K~A~tdiP~GGaKGGi~~dPk~~s~n 158 (514)
T KOG2250 79 KFRVPIPRDDGEFEVINGFRVQHNRARGPAKGGIRYHPSVNLDIVKALAFLMTYKNALTDIPYGGAKGGILIDPKGKSDN 158 (514)
T ss_pred EEEECEECCCCEEEEECCHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCCCHH
T ss_conf 99803246885389840011213430576668547677689889988889999876435888778766300186646547
Q ss_pred HHH-------H-HHHHHCCCCCEEEHHHCCC-C-HHHHHHHHHHHHHCC--------CCC----CCCCCCHHHHHHHHHH
Q ss_conf 999-------9-9987088846062220648-0-157999999987189--------421----6877218999999999
Q gi|254780137|r 133 TMV-------S-TIVALEPTFGGINLEDIKA-P-ECFEVERILSQKLKI--------PFL----HDDQHGTAVTVTAATL 190 (779)
Q Consensus 133 e~i-------~-~v~~~~p~fg~i~lEDi~~-p-~~f~i~~~l~~~~~i--------pvf----~DD~qGTa~v~lA~ll 190 (779)
|+. + ..+.+-|.- -+-=+||-- | +--.|...|+..... |.- ||-.--|+-=+..++-
T Consensus 159 Ei~r~~~~f~~el~~~iGp~~-DvPapdig~G~rEm~~if~~Ya~~~g~~~a~vTGK~i~~GGs~~R~~ATG~GV~~y~e 237 (514)
T KOG2250 159 EIERITRRFTDELIDIIGPDT-DVPAPDIGTGPREMGWIFDEYAKTHGHWKAVVTGKPISLGGSHGRYEATGRGVVYYVE 237 (514)
T ss_pred HHHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 999999999999999719999-8895314668512345588899862655136507987657756764450210899999
Q ss_pred HHHHHHC--CCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHH-HHHHCCC-CCCH--
Q ss_conf 9999709--88224117874254256789999998198857589995596030787332667889-7745088-9888--
Q gi|254780137|r 191 NGMKLVG--KKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKS-VYAQKSG-PKPL-- 264 (779)
Q Consensus 191 nAl~~~g--k~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~-~~a~~~~-~~~l-- 264 (779)
+=++-.+ +.++..|+++.|-|--|.-.+..+.+.|.+ -+-+.|++|.|+.. +++++.+. .++.... ..++
T Consensus 238 ~~~~~~~~~~~~kgkr~~i~G~Gnv~~~aa~~l~~~G~k--vvavsD~~G~l~np--~Gid~~eL~~~~~~k~~i~~f~~ 313 (514)
T KOG2250 238 AILNDANGKKGIKGKRVVIQGFGNVGGHAAKKLSEKGAK--VVAVSDSKGVLINP--DGIDIEELLDLADEKKTIKSFDG 313 (514)
T ss_pred HHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCE--EEEEECCCEEEECC--CCCCHHHHHHHHHHHCCCCCCCC
T ss_conf 999861577776742899857871588999999866997--99997673069899--99898999999986425025642
Q ss_pred --------------HHHCCCCCEEEECCCCCCCCHHHHHHC-CCC-CEEEEECCC
Q ss_conf --------------886058837862578877898899721-899-779991787
Q gi|254780137|r 265 --------------SETMNNADVFLGLSVAGALDPAILKFM-AEK-PLIMVLANP 303 (779)
Q Consensus 265 --------------~ea~~~adv~iG~S~~g~~t~e~v~~M-~~~-PiIfaLsNP 303 (779)
.--+..+|+|+-+...+.+|.+-.... +++ ++|--=||=
T Consensus 314 ~~~~~~~~~~~~~~~~~v~~~DI~vPCA~qn~I~~~nA~~lvak~~~~IvEGAN~ 368 (514)
T KOG2250 314 AKLSYEGYIAGLPPWTLVEKCDILVPCATQNEITGENAKALVAKGCKYIVEGANM 368 (514)
T ss_pred CCCCCCCCCCCCCCHHHHHHCCEEEECCCCCCCCHHHHHHHHHCCCCEEEECCCC
T ss_conf 0125664312575066575176774337667205765999986478689853789
No 330
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=74.84 E-value=5 Score=19.22 Aligned_cols=36 Identities=11% Similarity=0.003 Sum_probs=28.8
Q ss_pred CHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEEC
Q ss_conf 82241178742542567899999981988575899955
Q gi|254780137|r 199 KFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDL 236 (779)
Q Consensus 199 ~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~ 236 (779)
+++..||+++|.|-.|.+++++|...|.. .++.+|.
T Consensus 5 ~~~gkkv~V~GlG~sG~aaa~~L~~~g~~--~~v~~~~ 40 (468)
T PRK04690 5 QLEGKRVALWGWGREGRAAYRALRAQLPA--QPLTVFC 40 (468)
T ss_pred HCCCCEEEEEEECHHHHHHHHHHHHCCCE--EEEEECC
T ss_conf 43979799983478799999999966990--4999728
No 331
>TIGR00065 ftsZ cell division protein FtsZ; InterPro: IPR000158 In bacteria, FtsZ , , is an essential cell division protein which appears to be involved in the initiation of this event. It assembles into a cytokinetic ring on the inner surface of the cytoplasmic membrane at the place where division will occur. The ring serves as a scaffold that is disassembled when septation is completed. FtsZ ring formation is initiated at a single site on one side of the bacterium and appears to grow bidirectionally. In Escherichia coli, MinCD IPR005526 from INTERPRO, encoded by the MinB locus, form a complex which appears to block the formation of FtsZ rings at the cell poles, at the ancient mid cell division sites, whilst MinE, encoded at the same locus, specifically prevents the action of MinCD at mid cell. FtsZ is a GTP binding protein PDOC00199 from PROSITEDOC with a GTPase activity. It undergoes GTP-dependent polymerization into filaments (or tubules) that seem to form a cytoskeleton involved in septum synthesis. The structure and the properties of FtsZ clearly provide it with the capacity for the cytoskeletal, perhaps motor role, necessary for "contraction" along the division plane. In addition, however, the FtsZ ring structure provides the framework for the recruitment or assembly of the ten or so membrane and cytoplasmic proteins, uniquely required for cell division in E. coli or Bacillus subtilis, some of which are required for biogenesis of the new hemispherical poles of the two daughter cells. FtsZ can polymerize into various structures, for example a single linear polymer of FtsZ monomers, called a protofilament. Protofilaments can associate laterally to form pairs (sometimes called thick filaments, bundles (ill-defined linear associations of multiple protofilaments or thick filaments, sheets (parallel or anti-parallel two-dimensional associations of thick filaments and tubes (anti-parallel associations of thick filaments in a circular fashion to form a tubular structure). In addition, small circles of FtsZ monomers (a short protofilament bent around to join itself, apparently head to tail) have been observed and termed mini-rings. FtsZ is a protein of about 400 residues which is well conserved across bacterial species and which is also present in the chloroplast of plants as well as in archaebacteria . FtsZ shows structural similarity with eukaryotic tubulins. This similarity is probably both evolutionary and functionally significant.; GO: 0005525 GTP binding, 0005737 cytoplasm.
Probab=74.52 E-value=5.9 Score=18.70 Aligned_cols=234 Identities=18% Similarity=0.196 Sum_probs=121.3
Q ss_pred CHHHCEEEEECCCHHHHHHHHHHHHC----CCCCCCEEEEEC--CCEEECC-----------CCCCC----CHHHHHHHH
Q ss_conf 82241178742542567899999981----988575899955--9603078-----------73326----678897745
Q gi|254780137|r 199 KFSDIKIVTLGAGAAALACLNLLVTM----GVRRENIWVYDL--EGLVYEG-----------REKKF----DKWKSVYAQ 257 (779)
Q Consensus 199 ~l~~~~iv~~GaGaAg~~~a~ll~~~----g~~~~~i~~~D~--~Gli~~~-----------r~~~~----~~~~~~~a~ 257 (779)
+....||+++|.|-||.-+.+-|+.. ++..=.+|.++. +.|-++- .+.+| +|..-+-|-
T Consensus 14 ~~~~akI~ViGvGGgGnN~v~rm~~~~p~l~~~g~~fiA~NTD~Q~L~~~~~A~~kilIG~~~TrGLGAGG~P~iG~~AA 93 (365)
T TIGR00065 14 PSNKAKIKVIGVGGGGNNAVNRMVEEYPELGVEGVEFIAINTDAQHLKTTKYAPKKILIGKKLTRGLGAGGNPEIGRKAA 93 (365)
T ss_pred CCCCEEEEEEEECCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHH
T ss_conf 44662899998558823589999870553223762699974837854115562413561573355676799838889998
Q ss_pred CCCCCCHHHHCCCCC-EEEECC-CCCCCC--HHHHHHCCCCCEEEEECCCC-C---CC-----CHH----HHHHHCCCEE
Q ss_conf 088988888605883-786257-887789--88997218997799917872-0---09-----988----9985189879
Q gi|254780137|r 258 KSGPKPLSETMNNAD-VFLGLS-VAGALD--PAILKFMAEKPLIMVLANPN-P---EA-----MPD----EIKKVRPDAM 320 (779)
Q Consensus 258 ~~~~~~l~ea~~~ad-v~iG~S-~~g~~t--~e~v~~M~~~PiIfaLsNP~-p---Ei-----~p~----~a~~~~g~ai 320 (779)
+...-.+.++++|+| |||-+- ++|.=| --+|..-++.-=++-.+==| | |= -++ ...++.+-.|
T Consensus 94 ees~d~i~~~l~GaDmVFitAGmGGGTGTGAAPVvA~~AK~~GaLTvavVT~PF~~EG~kr~~~A~~Gl~~L~~~~Dt~i 173 (365)
T TIGR00065 94 EESRDEIRELLEGADMVFITAGMGGGTGTGAAPVVAKIAKELGALTVAVVTKPFKFEGKKRRKKAEEGLERLKQAVDTLI 173 (365)
T ss_pred HHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCEEE
T ss_conf 98899999970388818997258668666635789999975790699984287410158999999987898765568478
Q ss_pred ECCCCCCCCCC-----CCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 80588788774-----3503455665456751373002678999999999987203313667741387676667522366
Q gi|254780137|r 321 ICTGRSDFSNQ-----VNNVLCFPYIFRGALDCGATAITEEMKVAAARAMAVLVRDVPPDVVFDNFAKESPVFGPNYLIP 395 (779)
Q Consensus 321 vatGrs~~pnQ-----~NN~l~FPgif~Gal~~~A~~Itd~M~~aAa~alA~la~~~~~~~~~~~~~~~~~~~g~~yiiP 395 (779)
| .||| +.|-++--..| +.=|+-+.-|++-|++|.-.|- .
T Consensus 174 v------IPNdkLL~v~p~~~p~~~AF---------~~AD~vL~~aVkGI~elIt~Pg--l------------------- 217 (365)
T TIGR00065 174 V------IPNDKLLEVVPNNLPLNDAF---------KVADDVLRRAVKGISELITKPG--L------------------- 217 (365)
T ss_pred E------ECCHHHHHHCCCCCCHHHHH---------HHHHHHHHHHCCCHHHHHHCHH--H-------------------
T ss_conf 8------26646888606898889999---------9999999975026478863200--2-------------------
Q ss_pred CCCCHHHHHHHHHHHHHHHHHC-CCCCCCCCCHH----HHHHHHHHHHCCHHHHHHHH-HHHHHCCCCCEEEEECCCCCH
Q ss_conf 6546778679888899987421-32235432258----99999998620125688999-999721589469982477404
Q gi|254780137|r 396 SPFDPNLISYIAPAVAKAAEEA-GVASSPIEDYE----VYRDSLKRFSFPGRSLMKKI-FSIAKGTDSKRILFSAGEDER 469 (779)
Q Consensus 396 ~~fd~r~~~~va~AVa~aA~~s-GvAr~pi~d~~----~Y~~~L~~rl~~s~~~mr~i-~~~AK~~~pKRIVfaEgeD~r 469 (779)
..|=-|=-|+.|.. |+|.--+..-. +-|-....+..-+.-|+... ++-||. -+++-.|-..-
T Consensus 218 --------iN~DFADVr~vM~~~G~A~~G~G~a~g~~~a~Ra~eav~~A~~sPLLd~~~~~GA~G----~Lvn~~gG~Dl 285 (365)
T TIGR00065 218 --------INIDFADVRAVMSGGGVAMMGIGEASGEDRAKRAKEAVRKAISSPLLDVDKISGAKG----ALVNITGGPDL 285 (365)
T ss_pred --------CCCCHHHHHHHHCCCCEEEEECEEEECCCCCHHHHHHHHHHHCCCCCHHHCCCCCEE----EEEEEECCCCC
T ss_conf --------131298899995689815650113204452046899999741154302230288537----99998569896
Q ss_pred HHHHHHHHHHC
Q ss_conf 67999999852
Q gi|254780137|r 470 VLRATQILIKE 480 (779)
Q Consensus 470 VLrAA~~~~ee 480 (779)
+|+.+..+.+.
T Consensus 286 ~L~E~~~~~~~ 296 (365)
T TIGR00065 286 TLLEAEEIGEI 296 (365)
T ss_pred CHHHHHHHHHH
T ss_conf 28999999866
No 332
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=74.46 E-value=6 Score=18.69 Aligned_cols=36 Identities=28% Similarity=0.408 Sum_probs=29.5
Q ss_pred CHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf 822411787425425678999999819885758999559
Q gi|254780137|r 199 KFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLE 237 (779)
Q Consensus 199 ~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~ 237 (779)
+....+|-+.|+|-||.+++..|..+|. .+.++++.
T Consensus 120 ~~tg~~VaviGaGPAGl~~a~~L~~~G~---~Vtv~e~~ 155 (457)
T COG0493 120 SRTGKKVAVIGAGPAGLAAADDLSRAGH---DVTVFERV 155 (457)
T ss_pred CCCCCEEEEECCCCHHHHCHHHHHHCCC---EEEECCCC
T ss_conf 8767679998889515558899986898---79982666
No 333
>pfam03807 F420_oxidored NADP oxidoreductase coenzyme F420-dependent.
Probab=74.35 E-value=6 Score=18.67 Aligned_cols=78 Identities=21% Similarity=0.148 Sum_probs=46.6
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCCCCCCHHHHCCCCCEEEECCCCCCC
Q ss_conf 17874254256789999998198857589995596030787332667889774508898888860588378625788778
Q gi|254780137|r 204 KIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKSGPKPLSETMNNADVFLGLSVAGAL 283 (779)
Q Consensus 204 ~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~~~~~l~ea~~~adv~iG~S~~g~~ 283 (779)
||.|.|+|.=|.+++.-+...|.. .+..+++ ..+.....+..+.......+..|+++.+|+++=+--|..+
T Consensus 1 KIg~IG~G~mg~ai~~~l~~~g~~--~~~~~~r-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIilavkp~~~ 71 (93)
T pfam03807 1 KIGIIGAGNMGEALARGLAAAGHE--VIIANSR-------NPEKAAALAEELGVGATAVSNEEAAEEADVVILAVKPEDA 71 (93)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCC--CEEEECC-------CHHHHHHHHHHHCCCCCCCCHHHHHHCCCEEEEEECHHHH
T ss_conf 989997009999999999977996--1278648-------7899999999819976458999997449989999799999
Q ss_pred CHHHHHHC
Q ss_conf 98899721
Q gi|254780137|r 284 DPAILKFM 291 (779)
Q Consensus 284 t~e~v~~M 291 (779)
+++++.+
T Consensus 72 -~~vl~~i 78 (93)
T pfam03807 72 -PEVLAEL 78 (93)
T ss_pred -HHHHHHH
T ss_conf -9999987
No 334
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=74.11 E-value=5.4 Score=18.99 Aligned_cols=92 Identities=14% Similarity=0.088 Sum_probs=52.1
Q ss_pred HCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCE----------EECCCCCCCCHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf 41178742542567899999981988575899955960----------30787332667889774508898888860588
Q gi|254780137|r 202 DIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGL----------VYEGREKKFDKWKSVYAQKSGPKPLSETMNNA 271 (779)
Q Consensus 202 ~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gl----------i~~~r~~~~~~~~~~~a~~~~~~~l~ea~~~a 271 (779)
..||.|.|||+=|.-++-.|...|. .++++++.+- ++-...+.- ..+... ....+.....
T Consensus 2 ~MkI~IiGaGAiG~~~a~~L~~ag~---dV~lv~r~~~~~~~~~~~g~~~~~~~~~~----~~~~v~---~~~~~~~~~~ 71 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGL---PVRLILRDRQRLAAYQQAGGLTLVEQGQA----SLYAIP---AETADAPEPI 71 (305)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC---CEEEEEECHHHHHHHHHCCCEEEEECCCE----EEEECC---CCCCCCCCCC
T ss_conf 9889998823999999999984899---73999947899999997899899868955----787404---6576657887
Q ss_pred CEEEECCCCCCCCHHHHHHC----CCCCEEEEECCCC
Q ss_conf 37862578877898899721----8997799917872
Q gi|254780137|r 272 DVFLGLSVAGALDPAILKFM----AEKPLIMVLANPN 304 (779)
Q Consensus 272 dv~iG~S~~g~~t~e~v~~M----~~~PiIfaLsNP~ 304 (779)
|+++-+ ...-=+++.++.+ .++-.|+.|-|=-
T Consensus 72 D~viva-vK~~~~~~a~~~l~~~l~~~t~Iv~lQNGl 107 (305)
T PRK05708 72 HRLLVA-CKAYDAEPAVASLAHRLAPGAELLLLQNGL 107 (305)
T ss_pred CEEEEE-ECCCCHHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 789998-042568999999886449995899943776
No 335
>TIGR01466 cobJ_cbiH precorrin-3B C17-methyltransferase; InterPro: IPR006363 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase . There are at least two distinct cobalamin biosynthetic pathways in bacteria : Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobJ and CbiH precorrin-3B C(17)-methyltransferase (2.1.1.131 from EC), both as stand-alone enzymes and when CobJ forms part of a bifunctional enzyme. In the aerobic pathway, once CobG has generated precorrin-3b, CobJ catalyses the methylation of precorrin-3b at C-17 to form precorrin-4 (the extruded methylated C-20 fragment is left attached as an acyl group at C-1) . In the corresponding anaerobic pathway, CbiH carries out this ring contraction, using cobalt-precorrin-3b as a substrate to generate a tetramethylated delta-lactone. These proteins belong to the superfamily of tetrapyrrole (corrin/porphyrin) methylases (IPR000878 from INTERPRO), which includes methylases that use S-adenosylmethionine (S-AdoMet) in the methylation of diverse substrates. A number of other methylases in the cobalamin biosynthesis pathway also belong to this domain superfamily (precorrin-3 methylase, IPR012203 from INTERPRO, IPR012059 from INTERPRO, IPR012382 from INTERPRO, IPR012797 from INTERPRO and others), and a fusion of precorrin-3B C17-methyltransferases with precorrin isomerase is represented by IPR014422 from INTERPRO. Nomenclature note: precorrin-3B C17-methyltransferase is one of the two methyltransferases often referred to as precorrin-3 methylase (the other is precorrin-4 C11-methyltransferase, 2.1.1.133 from EC). ; GO: 0008168 methyltransferase activity, 0009236 cobalamin biosynthetic process.
Probab=74.07 E-value=6.1 Score=18.62 Aligned_cols=92 Identities=27% Similarity=0.300 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEECCCCEECCCCCCCCCC-CCCHHHHHHHHHHHHC-CCCEEEEECCCCCHHHHHHHHH
Q ss_conf 9999988998887513584799981785002542205105-8300100899998626-9852654238898899999998
Q gi|254780137|r 62 SMMIAEDPSKAAMYTNRSNLVAVVSNGSAVLGLGDIGPLA-SKPVMEGKAVLFKKFA-GINVFDIEINAKDVDTMVSTIV 139 (779)
Q Consensus 62 ~~~i~~~~~~~~~~t~~~n~vaVvtdGt~vLGLGdiG~~a-~~pvmeGK~~L~k~~a-gid~~~i~~~~~d~~e~i~~v~ 139 (779)
|.||.+ -+.+-++--.||.|||||= ||.|-.| +=+|.| ++.++.. .+ .++|++= -=.-.+-.+-.
T Consensus 54 ~~E~~R-a~~Ai~~A~~G~~VAlvSS-------GDpGiYgMA~l~~E---~~~~~~~~~~-~~dieV~-PGiTA~~aAAs 120 (254)
T TIGR01466 54 REEIER-AELAIELAKEGKTVALVSS-------GDPGIYGMAALVFE---ILEKKGLEDV-AIDIEVI-PGITAASAAAS 120 (254)
T ss_pred CHHHHH-HHHHHHHHHCCCEEEEEEC-------CCHHHHHHHHHHHH---HHHHCCCCCC-CEEEEEC-CCHHHHHHHHH
T ss_conf 627899-9999999860994899936-------87527888999999---9862389977-2347985-88337899999
Q ss_pred H----HCCCCCEEEHHHCCCCHHHHHHHHHHH
Q ss_conf 7----088846062220648015799999998
Q gi|254780137|r 140 A----LEPTFGGINLEDIKAPECFEVERILSQ 167 (779)
Q Consensus 140 ~----~~p~fg~i~lEDi~~p~~f~i~~~l~~ 167 (779)
. |..-|..|.|-|+=.|+. .||+|++.
T Consensus 121 ~LGaPL~HDFc~ISLSDlLtPw~-~Ie~R~~a 151 (254)
T TIGR01466 121 LLGAPLGHDFCVISLSDLLTPWP-VIEKRLRA 151 (254)
T ss_pred HHCCCCCCCEEEEECCCCCCCHH-HHHHHHHH
T ss_conf 73363113788887455567878-99999999
No 336
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=74.03 E-value=6.1 Score=18.62 Aligned_cols=37 Identities=22% Similarity=0.458 Sum_probs=29.6
Q ss_pred HHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEE
Q ss_conf 2411787425425678999999819885758999559603
Q gi|254780137|r 201 SDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLV 240 (779)
Q Consensus 201 ~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli 240 (779)
.|.-|||.|+|.||+.+|-...+.|. ++.++++...+
T Consensus 13 ~d~DVvVVG~G~AGl~AA~~Aae~Ga---~VivlEK~~~~ 49 (576)
T PRK12843 13 ADTDVIVIGSGAAGMAAALFAAIAGL---KVLLVERTEYV 49 (576)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCC---CEEEEECCCCC
T ss_conf 88286998968899999999998899---48999797999
No 337
>PRK07109 short chain dehydrogenase; Provisional
Probab=73.72 E-value=6.2 Score=18.57 Aligned_cols=39 Identities=18% Similarity=0.173 Sum_probs=31.2
Q ss_pred HCCCHHHCEEEEECCCHH-HHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf 098822411787425425-678999999819885758999559
Q gi|254780137|r 196 VGKKFSDIKIVTLGAGAA-ALACLNLLVTMGVRRENIWVYDLE 237 (779)
Q Consensus 196 ~gk~l~~~~iv~~GaGaA-g~~~a~ll~~~g~~~~~i~~~D~~ 237 (779)
.-|+|++..+||.||.+. |-++++.+.+.|. ++++++++
T Consensus 2 ~~k~l~~KvVvITGASsGIGra~A~~fA~~Ga---~Vvl~aR~ 41 (338)
T PRK07109 2 MLKPLGRQVVVITGASAGVGRATARAFARRGA---KVVLLARG 41 (338)
T ss_pred CCCCCCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEECC
T ss_conf 99606989899948434999999999998799---89999899
No 338
>PRK07589 ornithine cyclodeaminase; Validated
Probab=73.59 E-value=6.2 Score=18.55 Aligned_cols=219 Identities=19% Similarity=0.207 Sum_probs=114.8
Q ss_pred HHHHH-HHHCCHHHHHHHHHHHHHHHHHHH---HCCCCEEEEECCCCEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEE
Q ss_conf 55721-430730579999999889988875---13584799981785002542205105830010089999862698526
Q gi|254780137|r 47 QKDLS-LAYSPGVAAPSMMIAEDPSKAAMY---TNRSNLVAVVSNGSAVLGLGDIGPLASKPVMEGKAVLFKKFAGINVF 122 (779)
Q Consensus 47 ~~dl~-~~ytpgva~~~~~i~~~~~~~~~~---t~~~n~vaVvtdGt~vLGLGdiG~~a~~pvmeGK~~L~k~~agid~~ 122 (779)
.+|.+ |.-.-|+...-.++...-+..|.. ..|.-.++.-|.+ |..-=||+..|...=||. |++|
T Consensus 7 ~~~~~~lv~~~g~~~~~~~l~~~le~df~rw~~f~k~~R~~~h~~~---------gvielMP~~~~~~~~~K~---Vn~~ 74 (346)
T PRK07589 7 VDDMAKLVRRVGVETFLRELADYIEADFRRWQEFDKSPRVASHSPD---------GVIELMPTSDGELYSFKY---VNGH 74 (346)
T ss_pred HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCC---------CEEEEEECCCCCEEEEEE---EEEC
T ss_conf 8999999998799999999999999999722341778546324899---------769972247897489999---9888
Q ss_pred EEECCCCCHHHHHHHHHHHCCCCCEEEHHHCC--CCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCH
Q ss_conf 54238898899999998708884606222064--8015799999998718942168772189999999999999709882
Q gi|254780137|r 123 DIEINAKDVDTMVSTIVALEPTFGGINLEDIK--APECFEVERILSQKLKIPFLHDDQHGTAVTVTAATLNGMKLVGKKF 200 (779)
Q Consensus 123 ~i~~~~~d~~e~i~~v~~~~p~fg~i~lEDi~--~p~~f~i~~~l~~~~~ipvf~DD~qGTa~v~lA~llnAl~~~gk~l 200 (779)
|= +|..=..+| -|.+-|=|-. .|.|. -|=-.=|+.=+.|+=--|.|..-++
T Consensus 75 P~-----N~~~GLPtv------~a~~~L~D~~TG~P~al---------------~dgt~LTalRTaAaSalAak~LAR~- 127 (346)
T PRK07589 75 PK-----NTRRGLQTV------MAFGVLADVDTGYPLLL---------------SEMTLLTALRTAATSALAAKYLARP- 127 (346)
T ss_pred CC-----CCCCCCCCC------EEEEEEEECCCCCEEEE---------------ECCHHHHHHHHHHHHHHHHHHHCCC-
T ss_conf 89-----711388741------38999985688977788---------------5233677889888999999984578-
Q ss_pred HHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHC----CCCCCHHHHCCCCCEEEE
Q ss_conf 2411787425425678999999819885758999559603078733266788977450----889888886058837862
Q gi|254780137|r 201 SDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQK----SGPKPLSETMNNADVFLG 276 (779)
Q Consensus 201 ~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~----~~~~~l~ea~~~adv~iG 276 (779)
....+.++|+|.=+-.-+.-+.... .-++|.++|+. .+......+..... ....++.|++.+|||++-
T Consensus 128 ds~~l~iIGtG~QA~~Q~~A~~~vr-~i~~V~v~~r~-------~~~a~~~a~~l~~~g~~v~~~~s~~eAv~~ADIIvT 199 (346)
T PRK07589 128 DSRTMALIGNGAQSEFQALAFKALL-GIEEIRLYDID-------PAATAKLARNLAGPGLRIVRCRSVAEAVEGADIITT 199 (346)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHC-CCCEEEEEECC-------HHHHHHHHHHHHHCCCEEEEECCHHHHHHCCCEEEE
T ss_conf 9876999747088999999999858-98689998288-------799999999987269808994999999721988887
Q ss_pred CCC--C--CCCCHHHHHHCCCCCEEEEECCCCC---CCCHHHHHHH
Q ss_conf 578--8--7789889972189977999178720---0998899851
Q gi|254780137|r 277 LSV--A--GALDPAILKFMAEKPLIMVLANPNP---EAMPDEIKKV 315 (779)
Q Consensus 277 ~S~--~--g~~t~e~v~~M~~~PiIfaLsNP~p---Ei~p~~a~~~ 315 (779)
++. . -+|+.+||+ +.--|=++.--+| |+.|+....+
T Consensus 200 aT~s~~~~Pil~~~~v~---pGtHInaVGad~Pgk~ELd~~ll~rA 242 (346)
T PRK07589 200 VTADKANATILTPDMIE---PGMHINAVGGDCPGKTELHADILRRA 242 (346)
T ss_pred ECCCCCCCCCCCHHHCC---CCCEEEEECCCCCCCCCCCHHHHHHC
T ss_conf 11477888602387759---99579852799998530799999519
No 339
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=73.41 E-value=5.4 Score=18.95 Aligned_cols=166 Identities=12% Similarity=0.098 Sum_probs=80.4
Q ss_pred HHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCC-----EEEC--CCCCCCC--HHHHHHHHCCC-CC--------
Q ss_conf 24117874254256789999998198857589995596-----0307--8733266--78897745088-98--------
Q gi|254780137|r 201 SDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEG-----LVYE--GREKKFD--KWKSVYAQKSG-PK-------- 262 (779)
Q Consensus 201 ~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~G-----li~~--~r~~~~~--~~~~~~a~~~~-~~-------- 262 (779)
+...++|.|+|+||+=||...-..|. ++.++|..- ++.. +|-+-.| .......+... ..
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~---~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ 78 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGR---RVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALAR 78 (408)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC---EEEEEECCCCCCCEEEECCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHH
T ss_conf 74218998887889999998864698---799980586422136853788743326505899997589820677889872
Q ss_pred ----CHHHHC--CCCCEEEECCC---CCCCC-HHHHH----HCCCC----------------CEEEEECCCCCCCCHHHH
Q ss_conf ----888860--58837862578---87789-88997----21899----------------779991787200998899
Q gi|254780137|r 263 ----PLSETM--NNADVFLGLSV---AGALD-PAILK----FMAEK----------------PLIMVLANPNPEAMPDEI 312 (779)
Q Consensus 263 ----~l~ea~--~~adv~iG~S~---~g~~t-~e~v~----~M~~~----------------PiIfaLsNP~pEi~p~~a 312 (779)
++-+-+ .|...+.+.++ |..-+ +.+|+ .|.+. .-.|-+.-|.-|
T Consensus 79 ft~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~------ 152 (408)
T COG2081 79 FTPEDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGE------ 152 (408)
T ss_pred CCHHHHHHHHHHCCCEEEECCCCEECCCCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEECCCEEEEECCCCC------
T ss_conf 79899999998659715774685255786666899999999999759589814647767633855899859998------
Q ss_pred HHHCCCEEECCCCCCCCCCCCHHHHHHHHH---HHHHHCCCCC----CCHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 851898798058878877435034556654---5675137300----267899999999998720331366774
Q gi|254780137|r 313 KKVRPDAMICTGRSDFSNQVNNVLCFPYIF---RGALDCGATA----ITEEMKVAAARAMAVLVRDVPPDVVFD 379 (779)
Q Consensus 313 ~~~~g~aivatGrs~~pnQ~NN~l~FPgif---~Gal~~~A~~----Itd~M~~aAa~alA~la~~~~~~~~~~ 379 (779)
.......|+|||---+|.-+---+.||-.- .-.+.-|+.. +.+.++ +.++.+.-..++-.+..
T Consensus 153 ~i~~d~lilAtGG~S~P~lGstg~gy~iA~~~G~~I~~~rpalvpft~~~~~~----~~l~gls~~~v~~~v~~ 222 (408)
T COG2081 153 TVKCDSLILATGGKSWPKLGSTGFGYPIARQFGHTITPLRPALVPFTLDESFL----ERLAGLSLKSVPLSVTA 222 (408)
T ss_pred EEECCEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHH----HHHCCCCCCCEEEEEEC
T ss_conf 89804899922886778789984026899975984056866557724787899----87437865653789844
No 340
>PRK06046 alanine dehydrogenase; Validated
Probab=73.31 E-value=6.3 Score=18.50 Aligned_cols=192 Identities=18% Similarity=0.187 Sum_probs=98.6
Q ss_pred HHHHHCCCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCCC-----CCCHHH
Q ss_conf 999709882241178742542567899999981988575899955960307873326678897745088-----988888
Q gi|254780137|r 192 GMKLVGKKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKSG-----PKPLSE 266 (779)
Q Consensus 192 Al~~~gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~~-----~~~l~e 266 (779)
|.+...++ ...++.++|+|.=+-.-++.+.... .-++|++.++. .+....+..++....+ ..+.++
T Consensus 120 a~~~LA~~-~~~~l~iiG~G~Qa~~~~~al~~v~-~i~~i~v~~r~-------~~~~~~fa~~~~~~~~~~v~~~~~~~~ 190 (326)
T PRK06046 120 AAKYLARK-DSKVIGIIGAGNQARTQLEALSRVF-DLEEVRVYDRT-------KESCEKFISEMSDFVPCEIVYEEDVEE 190 (326)
T ss_pred HHHHHCCC-CCCEEEEECCCHHHHHHHHHHHHHC-CCCEEEEEECC-------HHHHHHHHHHHHHHCCCCEEECCCHHH
T ss_conf 99875368-9855899657088999999999738-97789999189-------999999999998655986597399999
Q ss_pred HCCCCCEEEECCC--CCCCCHHHHHHCCCCCEEEEECCCCC---CCCHHHHHHHCCCEEECCCCCCCCCCCCHHHHHHHH
Q ss_conf 6058837862578--87789889972189977999178720---099889985189879805887887743503455665
Q gi|254780137|r 267 TMNNADVFLGLSV--AGALDPAILKFMAEKPLIMVLANPNP---EAMPDEIKKVRPDAMICTGRSDFSNQVNNVLCFPYI 341 (779)
Q Consensus 267 a~~~adv~iG~S~--~g~~t~e~v~~M~~~PiIfaLsNP~p---Ei~p~~a~~~~g~aivatGrs~~pnQ~NN~l~FPgi 341 (779)
+. .+||++.++. ..+|..+|++ +..-|-+..--+| |+.++.... .+.++ . .-.|+.+. |=
T Consensus 191 ~~-~aDiI~taT~s~~P~~~~~~l~---pG~hi~~iG~~~p~~~Eld~~~l~~--a~v~v-D----~~~~~~~~----g~ 255 (326)
T PRK06046 191 AC-DCDILVTTTPSRKPVVKADWVK---EGTHINAIGADAPGKQELDPELLKR--AKVFV-D----DLVQALHS----GE 255 (326)
T ss_pred HH-CCCEEEEEECCCCCEECCCCCC---CCCEEEECCCCCCCHHCCCHHHHHC--CCEEE-E----CHHHHCCC----CC
T ss_conf 82-7999999828998451443357---8717741268986610079999950--98899-5----68895025----74
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHH-HHHHHHHHHHHHHHCCCC
Q ss_conf 4567513730026789999999999872033136677413876766675223666546778-679888899987421322
Q gi|254780137|r 342 FRGALDCGATAITEEMKVAAARAMAVLVRDVPPDVVFDNFAKESPVFGPNYLIPSPFDPNL-ISYIAPAVAKAAEEAGVA 420 (779)
Q Consensus 342 f~Gal~~~A~~Itd~M~~aAa~alA~la~~~~~~~~~~~~~~~~~~~g~~yiiP~~fd~r~-~~~va~AVa~aA~~sGvA 420 (779)
+.-++ ..-.++++-..+ .|.++.....+. +.. -.+.++=+..---+ =..++..|-+.|.+.|+-
T Consensus 256 ~~~~~--~~g~~~~~~v~~---elg~lv~g~~~g--------r~~--~~~itvf~svG~a~~Dla~a~~v~~~A~~~glG 320 (326)
T PRK06046 256 VNVPL--SKGIIRVDDIHA---QLGEVIAGLKPG--------RTS--EEEITIFDSTGLAIQDVATAHLVYERAVSKGVG 320 (326)
T ss_pred HHHHH--HCCCCCHHHCCC---CHHHHHCCCCCC--------CCC--CCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 00187--749998422023---199986799889--------899--998599989895999999999999999981998
Q ss_pred CC
Q ss_conf 35
Q gi|254780137|r 421 SS 422 (779)
Q Consensus 421 r~ 422 (779)
++
T Consensus 321 ~~ 322 (326)
T PRK06046 321 RQ 322 (326)
T ss_pred EE
T ss_conf 78
No 341
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=73.31 E-value=6.2 Score=18.58 Aligned_cols=57 Identities=18% Similarity=0.205 Sum_probs=46.1
Q ss_pred EECCCCCHHHHHHHHHHHCCCCCE--EEHHHCCCCHHHHHHHHHHHHHCCCCCCC----CCCCHH
Q ss_conf 423889889999999870888460--62220648015799999998718942168----772189
Q gi|254780137|r 124 IEINAKDVDTMVSTIVALEPTFGG--INLEDIKAPECFEVERILSQKLKIPFLHD----DQHGTA 182 (779)
Q Consensus 124 i~~~~~d~~e~i~~v~~~~p~fg~--i~lEDi~~p~~f~i~~~l~~~~~ipvf~D----D~qGTa 182 (779)
+-+|..|.+|..+.+..+.|..++ |++|-|.+ .-+++.++|++. +.++|-| ||--|-
T Consensus 7 vAlD~~~~~~~~~l~~~l~~~i~~~Kig~~l~~~-~G~~~i~~l~~~-g~~iFlDlKl~DIpnTv 69 (231)
T PRK00230 7 VALDFPSKEEALAFLDQLDPAVLFVKVGMELFTA-GGPQFVRELKQR-GFKVFLDLKLHDIPNTV 69 (231)
T ss_pred EEECCCCHHHHHHHHHHHCCCCCEEEECHHHHHH-CCHHHHHHHHHC-CCCEEEEEECCCCCHHH
T ss_conf 9964899999999999717755299989899864-189999999977-99689872022654589
No 342
>pfam00890 FAD_binding_2 FAD binding domain. This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase.
Probab=73.30 E-value=6.3 Score=18.50 Aligned_cols=32 Identities=25% Similarity=0.322 Sum_probs=26.8
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCE
Q ss_conf 78742542567899999981988575899955960
Q gi|254780137|r 205 IVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGL 239 (779)
Q Consensus 205 iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gl 239 (779)
|||.|+|.||+.+|--..+.|. +++++++...
T Consensus 2 VvVIG~G~AGl~AAi~Aae~Ga---~VillEk~~~ 33 (401)
T pfam00890 2 VVVIGSGLAGLAAALEAAEAGL---KVAVVEKGQP 33 (401)
T ss_pred EEEECCCHHHHHHHHHHHHCCC---CEEEEECCCC
T ss_conf 8999886999999999997899---4899978999
No 343
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=73.28 E-value=6.3 Score=18.50 Aligned_cols=32 Identities=22% Similarity=0.502 Sum_probs=28.0
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCC
Q ss_conf 17874254256789999998198857589995596
Q gi|254780137|r 204 KIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEG 238 (779)
Q Consensus 204 ~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~G 238 (779)
++++.|+|.||...|..+.++|. ++.++++..
T Consensus 3 dviVIG~GpaG~~AA~~aa~~G~---kV~lIE~~~ 34 (467)
T PRK07845 3 RIVIIGGGPGGYEAALVAAQLGA---DVTVIERDG 34 (467)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC---EEEEEECCC
T ss_conf 19998748899999999997879---599996799
No 344
>PRK11430 hypothetical protein; Provisional
Probab=72.98 E-value=6.4 Score=18.45 Aligned_cols=131 Identities=17% Similarity=0.148 Sum_probs=80.0
Q ss_pred HCCCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCC--EEECCCCCCCCHHHHHHH-HCCCCC----------
Q ss_conf 0988224117874254256789999998198857589995596--030787332667889774-508898----------
Q gi|254780137|r 196 VGKKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEG--LVYEGREKKFDKWKSVYA-QKSGPK---------- 262 (779)
Q Consensus 196 ~gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~G--li~~~r~~~~~~~~~~~a-~~~~~~---------- 262 (779)
...+|+-+||+=++..-||=.|+.+|-.+|+ .++-+.+-| =.+.......+.....|. .+++.+
T Consensus 6 ~~gPL~GirVld~~~~~agP~a~~~LadlGA---~VIKVE~p~~Gd~~R~~~p~~~g~s~~~~~~Nr~Krsi~ldlk~~~ 82 (381)
T PRK11430 6 SKGPFEGLLVIDMTHVLNGPFGTQLLCNMGA---RVIKVEPPGHGDDTRTFGPYVDGQSLYYSFINHGKESVVLDLKNDH 82 (381)
T ss_pred CCCCCCCCEEEECCCHHHHHHHHHHHHHHCC---EEEEECCCCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEEEECCCHH
T ss_conf 9989999989983774589999999998099---6999888998874224588889852788985899969987792878
Q ss_pred ---CHHHHCCCCCEEEECCCCCC-----CCHHHHHHCCCCCEEEEE-----CCCCCCCC-HHHHHHHCCCEEECCCCCCC
Q ss_conf ---88886058837862578877-----898899721899779991-----78720099-88998518987980588788
Q gi|254780137|r 263 ---PLSETMNNADVFLGLSVAGA-----LDPAILKFMAEKPLIMVL-----ANPNPEAM-PDEIKKVRPDAMICTGRSDF 328 (779)
Q Consensus 263 ---~l~ea~~~adv~iG~S~~g~-----~t~e~v~~M~~~PiIfaL-----sNP~pEi~-p~~a~~~~g~aivatGrs~~ 328 (779)
-+.+.++.+|||+--..||+ +..|.++.-|++-|.-.+ ..|-.+-. .+...++.+.....||.++.
T Consensus 83 g~~~~~~Lv~~aDv~i~n~rpg~~~rlGl~ye~l~~~NP~lIy~sisgfG~~GP~~~~~g~D~~~qA~sG~~~~~G~~~~ 162 (381)
T PRK11430 83 DKSIFINMLKQADVLAENFRPGTMEKLGFSWETLQEINPRLIYASSSGFGHTGPLKDAPAYDTIIQAMSGIMMETGYPDA 162 (381)
T ss_pred HHHHHHHHHHCCCCCEECCCCCHHHHCCCCHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCC
T ss_conf 88999999854993124588578988087546676509733899742489999876767764776523586333689999
Q ss_pred C
Q ss_conf 7
Q gi|254780137|r 329 S 329 (779)
Q Consensus 329 p 329 (779)
|
T Consensus 163 ~ 163 (381)
T PRK11430 163 P 163 (381)
T ss_pred C
T ss_conf 9
No 345
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=72.69 E-value=6.5 Score=18.40 Aligned_cols=98 Identities=19% Similarity=0.156 Sum_probs=53.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEEC-CCCCCCC--HHHHHHHHCCCCCCHHHHCCCCCEEEECCC
Q ss_conf 1178742542567899999981988575899955960307-8733266--788977450889888886058837862578
Q gi|254780137|r 203 IKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYE-GREKKFD--KWKSVYAQKSGPKPLSETMNNADVFLGLSV 279 (779)
Q Consensus 203 ~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~-~r~~~~~--~~~~~~a~~~~~~~l~ea~~~adv~iG~S~ 279 (779)
.||.+.|||+=|.-++-.|...|. +++++++..-..+ -+.+++. .....+.......+-.+.....|+++-+..
T Consensus 1 MkI~IiGaGaiG~~~a~~L~~ag~---~V~li~r~~~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~~~~D~iiv~vK 77 (307)
T PRK06522 1 MKIAILGAGAIGGLFGARLAQAGH---DVTLVARGATLAEALNENGLRLLEGGEVFVVPVPAADDPAELGPQDLVILAVK 77 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC---CEEEEECCHHHHHHHHHCCEEEECCCCEEECCCCCCCCHHHCCCCCEEEEECC
T ss_conf 989999914999999999984899---88999788889999996893995289769805503488667489888999806
Q ss_pred CCCCCHHHHHHC----CCCCEEEEECCCC
Q ss_conf 877898899721----8997799917872
Q gi|254780137|r 280 AGALDPAILKFM----AEKPLIMVLANPN 304 (779)
Q Consensus 280 ~g~~t~e~v~~M----~~~PiIfaLsNP~ 304 (779)
. -=+++.++.+ .++-.|..+-|=-
T Consensus 78 s-~~~~~a~~~l~~~l~~~t~iv~lqNG~ 105 (307)
T PRK06522 78 A-YQLPAALPDLAPLLGPETVVLFLQNGV 105 (307)
T ss_pred C-CCHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 6-689999999986459994899961686
No 346
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=72.51 E-value=6.5 Score=18.44 Aligned_cols=76 Identities=26% Similarity=0.409 Sum_probs=35.4
Q ss_pred HHCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHH------HHHHHHHHHHHCCCHHH---------------CEEEEEC
Q ss_conf 20648015799999998718942168772189999------99999999970988224---------------1178742
Q gi|254780137|r 151 EDIKAPECFEVERILSQKLKIPFLHDDQHGTAVTV------TAATLNGMKLVGKKFSD---------------IKIVTLG 209 (779)
Q Consensus 151 EDi~~p~~f~i~~~l~~~~~ipvf~DD~qGTa~v~------lA~llnAl~~~gk~l~~---------------~~iv~~G 209 (779)
=|.-+|.=|. +..+-...|||+||||++-.=... -+|..-+.+++..++++ ..|-++-
T Consensus 17 IDVRSP~Ef~-~ghiPgAiNiPll~d~ER~~VGt~YK~~g~~~A~~lG~~lv~~~l~~~~~~~~~~~~~~~~~~~vyC~R 95 (128)
T cd01520 17 IDVRSPKEFF-EGHLPGAINLPLLDDEERALVGTLYKQQGREAAIELGLELVSGKLKRILNEAWEARLERDPKLLIYCAR 95 (128)
T ss_pred EECCCHHHHH-CCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 8758878873-598888763602181889998588885498999999999998899999999999861469988999825
Q ss_pred CCHHHHHHHHHHHHCCCC
Q ss_conf 542567899999981988
Q gi|254780137|r 210 AGAAALACLNLLVTMGVR 227 (779)
Q Consensus 210 aGaAg~~~a~ll~~~g~~ 227 (779)
.|--.-..+.+|...|..
T Consensus 96 GGmRS~s~~~~L~~~G~~ 113 (128)
T cd01520 96 GGMRSQSLAWLLESLGID 113 (128)
T ss_pred CCHHHHHHHHHHHHCCCC
T ss_conf 770679999999985997
No 347
>COG3643 Glutamate formiminotransferase [Amino acid transport and metabolism]
Probab=72.46 E-value=6.6 Score=18.37 Aligned_cols=14 Identities=21% Similarity=0.366 Sum_probs=7.1
Q ss_pred CCEEECCCCHHHHC
Q ss_conf 95998673046532
Q gi|254780137|r 678 NLEVDAIVQEEVCL 691 (779)
Q Consensus 678 d~~VDGemq~D~AL 691 (779)
+.++-|..-+-+-+
T Consensus 261 ~sEivGl~P~~aL~ 274 (302)
T COG3643 261 GSEIVGLVPEQALI 274 (302)
T ss_pred CCEEECCCHHHHHH
T ss_conf 65675354389999
No 348
>PRK07121 hypothetical protein; Validated
Probab=72.32 E-value=6.7 Score=18.35 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=8.2
Q ss_pred EEEECCCHHHHHHHHHHHHCCC
Q ss_conf 7874254256789999998198
Q gi|254780137|r 205 IVTLGAGAAALACLNLLVTMGV 226 (779)
Q Consensus 205 iv~~GaGaAg~~~a~ll~~~g~ 226 (779)
|||.|+|.||+..|-.....|.
T Consensus 23 VvVVGsG~AGl~AA~~Aae~Ga 44 (491)
T PRK07121 23 VVVVGFGAAGACAAVEAAAAGA 44 (491)
T ss_pred EEEECCCHHHHHHHHHHHHCCC
T ss_conf 8998967999999999998899
No 349
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=72.21 E-value=6.4 Score=18.48 Aligned_cols=33 Identities=21% Similarity=0.247 Sum_probs=28.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCC
Q ss_conf 117874254256789999998198857589995596
Q gi|254780137|r 203 IKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEG 238 (779)
Q Consensus 203 ~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~G 238 (779)
.-|+|.|||-+|...|-.|...|+ ++.++|+.-
T Consensus 3 ~DV~IvGaGpvGl~lAl~L~~~G~---~v~lie~~~ 35 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALEGSGL---EVLLVDGGP 35 (405)
T ss_pred CCEEEECCCHHHHHHHHHHHCCCC---CEEEEECCC
T ss_conf 889999905999999999961899---789995899
No 350
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=72.15 E-value=6.7 Score=18.32 Aligned_cols=33 Identities=15% Similarity=0.361 Sum_probs=27.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCC
Q ss_conf 117874254256789999998198857589995596
Q gi|254780137|r 203 IKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEG 238 (779)
Q Consensus 203 ~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~G 238 (779)
--+++.|+|.||..+|..+.++|. ++.++|+.-
T Consensus 5 YDviVIG~GpaG~~aA~~aa~~G~---kV~liE~~~ 37 (462)
T PRK06416 5 YDVIVIGAGPGGYVAAIRAAQLGL---KVAIVEKEK 37 (462)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCC---EEEEEECCC
T ss_conf 998999988899999999996899---399996799
No 351
>TIGR00292 TIGR00292 thiazole biosynthesis enzyme; InterPro: IPR002922 This family includes P32318 from SWISSPROT a putative thiamine biosynthetic enzyme . This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.; GO: 0009228 thiamin biosynthetic process.
Probab=72.06 E-value=5 Score=19.20 Aligned_cols=85 Identities=18% Similarity=0.373 Sum_probs=47.2
Q ss_pred HHHCEEEEECCCHHHHHHHHHHHHCC--CCCCCEEEEECCC----------EEECC------CCCCCCHHHHHHHHCCCC
Q ss_conf 22411787425425678999999819--8857589995596----------03078------733266788977450889
Q gi|254780137|r 200 FSDIKIVTLGAGAAALACLNLLVTMG--VRRENIWVYDLEG----------LVYEG------REKKFDKWKSVYAQKSGP 261 (779)
Q Consensus 200 l~~~~iv~~GaGaAg~~~a~ll~~~g--~~~~~i~~~D~~G----------li~~~------r~~~~~~~~~~~a~~~~~ 261 (779)
+-+.=|+|.|||+.|+.+|..|-+.| .+ +.++.|+= .++.. -.+.|++.--++-...+.
T Consensus 19 ~~e~DViiVGAGpSGLtAAyylA~~gPDLK---v~vlEr~la~GGG~WgGGmlF~~~Vv~~pA~~~L~e~gI~~~d~~dg 95 (283)
T TIGR00292 19 YAESDVIIVGAGPSGLTAAYYLAKEGPDLK---VVVLERKLAFGGGSWGGGMLFSKIVVEKPAKEILDEFGIRYEDEGDG 95 (283)
T ss_pred HHHCCEEEECCCCCHHHHHHHHHHCCCCEE---EEEEEECCCCCCCCCCCCCCCCCEEEECHHHHHHHHCCCCEEECCCC
T ss_conf 501066798789746689999984299806---99985110268986642224561365140468888659813356885
Q ss_pred C----------C-HHHHCC-C-CCEEEECCCCCCCCHHH
Q ss_conf 8----------8-888605-8-83786257887789889
Q gi|254780137|r 262 K----------P-LSETMN-N-ADVFLGLSVAGALDPAI 287 (779)
Q Consensus 262 ~----------~-l~ea~~-~-adv~iG~S~~g~~t~e~ 287 (779)
- + +..|+. | +.+|-|+|.-.+.+++-
T Consensus 96 ~~Vads~e~~s~l~s~a~~aGn~Ki~~~~~vEDl~~R~~ 134 (283)
T TIGR00292 96 YVVADSAEFISTLASKALQAGNAKIFNGVSVEDLILRDD 134 (283)
T ss_pred EEEEHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCC
T ss_conf 487236768999999986588731433368887787688
No 352
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=71.84 E-value=6.8 Score=18.27 Aligned_cols=110 Identities=15% Similarity=0.215 Sum_probs=50.9
Q ss_pred CCCCC-CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHH-CCCCCEEEEEC
Q ss_conf 66752-23666546778679888899987421322354322589999999862012568899999972-15894699824
Q gi|254780137|r 387 VFGPN-YLIPSPFDPNLISYIAPAVAKAAEEAGVASSPIEDYEVYRDSLKRFSFPGRSLMKKIFSIAK-GTDSKRILFSA 464 (779)
Q Consensus 387 ~~g~~-yiiP~~fd~r~~~~va~AVa~aA~~sGvAr~pi~d~~~Y~~~L~~rl~~s~~~mr~i~~~AK-~~~pKRIVfaE 464 (779)
+||-. +..|.|+-.+-..+.-..+++. +| +++++ .+.++-.+.+ ..+.+..+ ....||+++.
T Consensus 248 ~~giP~~~~~~p~Gl~~Td~fL~~la~~---~g---~~vpe--~i~~er~rl~-------d~m~d~~h~~l~gkrvai~- 311 (454)
T cd01973 248 KFDVPAILGPTPIGIKNTDAFLQNIKEL---TG---KPIPE--SLVRERGIAI-------DALADLAHMFFANKKVAIF- 311 (454)
T ss_pred HHCCCEEECCCCCCHHHHHHHHHHHHHH---HC---CCCCH--HHHHHHHHHH-------HHHHHHHHHHHCCCEEEEE-
T ss_conf 8689858437665369999999999998---58---98709--9999999999-------9999999999659689998-
Q ss_pred CCCCHHHHHHHHHHHCCCE-EEEEECCH-------HHHHHHHHHCCCCCCCCCCCEEECCCH
Q ss_conf 7740467999999852750-89995598-------999999998498766546842306202
Q gi|254780137|r 465 GEDERVLRATQILIKENIA-RPVLIGSL-------LTIQDNIRRHDLQIIATKDFDVIDLNN 518 (779)
Q Consensus 465 geD~rVLrAA~~~~eeGia-~PILVG~~-------e~I~~~~~~~gL~l~~~~dieIidp~~ 518 (779)
|+-..++--+.-+.+.|+. ..+++|+. +.+++..+..+ .+.++++..+
T Consensus 312 g~~d~~~~l~~fl~e~g~~p~~~~~~~~~~~~~~~~~~~~l~~~~~------~~~~vv~~~D 367 (454)
T cd01973 312 GHPDLVIGLAEFCLEVEMKPVLLLLGDDNSKYKKDPRIKALKEKAD------YDMEIVTNAD 367 (454)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHCC------CCCEEEECCC
T ss_conf 4859999999999976985899996589864343179998653058------8846983799
No 353
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=71.79 E-value=6.8 Score=18.27 Aligned_cols=35 Identities=37% Similarity=0.548 Sum_probs=30.7
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEE
Q ss_conf 1787425425678999999819885758999559603
Q gi|254780137|r 204 KIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLV 240 (779)
Q Consensus 204 ~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli 240 (779)
||++.|+|.=|.-+++.|..+|+. +|.++|-+-+-
T Consensus 1 kvlvvG~GglG~e~~k~la~~Gvg--~i~ivD~d~i~ 35 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFR--NIHVIDMDTID 35 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCC--EEEEECCCEEC
T ss_conf 989992888899999999984898--59997399344
No 354
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=71.71 E-value=6.9 Score=18.26 Aligned_cols=35 Identities=14% Similarity=0.307 Sum_probs=29.4
Q ss_pred HHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCC
Q ss_conf 24117874254256789999998198857589995596
Q gi|254780137|r 201 SDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEG 238 (779)
Q Consensus 201 ~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~G 238 (779)
++--+|+.|+|.||+.+|..+...|. ++.++|+.-
T Consensus 2 ~~YDvvVIG~GpaG~~aA~~aa~~G~---~V~liE~~~ 36 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGK---KVALIEKGP 36 (460)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCC---EEEEEECCC
T ss_conf 81698999977899999999996979---099995899
No 355
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=71.65 E-value=6.7 Score=18.33 Aligned_cols=151 Identities=21% Similarity=0.297 Sum_probs=71.3
Q ss_pred HCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHH--HHCCCC-----CCHHHHC------
Q ss_conf 411787425425678999999819885758999559603078733266788977--450889-----8888860------
Q gi|254780137|r 202 DIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVY--AQKSGP-----KPLSETM------ 268 (779)
Q Consensus 202 ~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~--a~~~~~-----~~l~ea~------ 268 (779)
--|||+.|+|--++-|++--+++|+. +++++=|+ +| +.|.-...+. |++... ..-.+.+
T Consensus 573 GK~VvVIGGGNTAMDaARTA~RLGAe--~VtivYRR-----te-~EMPA~~eEV~~A~EEGV~F~fL~~Pveiigde~G~ 644 (993)
T PRK12775 573 GKSVVVIGAGNTAMDCLRVARRLGAA--TVRCVYRR-----SE-AEAPARIEEIRHAKEEGVDFFFLHSPVEILVTEEGS 644 (993)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCC--EEEEEEEC-----CH-HHCCCCHHHHHHHHHCCCEEEECCCCCEEEECCCCE
T ss_conf 99699989943699988999976998--67999968-----85-638988999987986593999626971678658863
Q ss_pred -CCC---CEEEEC---CC---CCCCCHHHHHHCCCCCEEEEECC-CCC---CCCHHHHHHHCCCEEECCCCCCCCCCCCH
Q ss_conf -588---378625---78---87789889972189977999178-720---09988998518987980588788774350
Q gi|254780137|r 269 -NNA---DVFLGL---SV---AGALDPAILKFMAEKPLIMVLAN-PNP---EAMPDEIKKVRPDAMICTGRSDFSNQVNN 334 (779)
Q Consensus 269 -~~a---dv~iG~---S~---~g~~t~e~v~~M~~~PiIfaLsN-P~p---Ei~p~~a~~~~g~aivatGrs~~pnQ~NN 334 (779)
++. ..=+|- |+ | +=+.+.+ .|--+-+|.|+.. |+| +-+|.....-.| .|++. .-.|.-|
T Consensus 645 V~gv~~~kMeLGEPD~SGRRrP-VP~g~~~-~le~D~VI~AIGq~pnpl~~~~~pgL~~~kwG-tI~vD----e~t~~Ts 717 (993)
T PRK12775 645 VRAVRLQKMELGEPDERGRRKP-MPLDEFI-ELECDTVIYALGTKPNPIIGQATPGLALNKWG-NIAAD----DDTQSTN 717 (993)
T ss_pred EEEEEEEEEECCCCCCCCCCCC-CCCCCEE-EEECCEEEECCCCCCCCCCCCCCCCCEECCCC-CEEEC----CCCCCCC
T ss_conf 9899999816679898889478-6788548-88879999957799983100368882225877-08989----8877668
Q ss_pred HHHHHHHHHH-HHHCCCCCCCHHHH--HHHHHHHHHHHC
Q ss_conf 3455665456-75137300267899--999999998720
Q gi|254780137|r 335 VLCFPYIFRG-ALDCGATAITEEMK--VAAARAMAVLVR 370 (779)
Q Consensus 335 ~l~FPgif~G-al~~~A~~Itd~M~--~aAa~alA~la~ 370 (779)
-||+|-| -...++.++-..|= --||++|++.-|
T Consensus 718 ---~pgVFAGGDiVtGaaTVI~AmGaGrrAArsId~yLR 753 (993)
T PRK12775 718 ---MPGVFAGGDIVTGGATVILAMSAGRRAAKSIAAWLR 753 (993)
T ss_pred ---CCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ---888763656125576999998708999999999996
No 356
>PRK10262 thioredoxin reductase; Provisional
Probab=71.34 E-value=7 Score=18.20 Aligned_cols=35 Identities=14% Similarity=0.129 Sum_probs=28.5
Q ss_pred HHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf 22411787425425678999999819885758999559
Q gi|254780137|r 200 FSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLE 237 (779)
Q Consensus 200 l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~ 237 (779)
.+..+|+|.|+|.||+.+|-.+...|. +..++++.
T Consensus 4 ~k~~dviIIG~GPAGLsAA~~a~r~g~---~~~lie~~ 38 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANL---QPVLITGM 38 (321)
T ss_pred CEEEEEEEECCCHHHHHHHHHHHHCCC---CEEEEECC
T ss_conf 606009999976899999999998699---67999605
No 357
>TIGR01591 Fdh-alpha formate dehydrogenase, alpha subunit; InterPro: IPR006478 This group of sequences describe a subset of formate dehydrogenase alpha chains found mainly in the archaea but also in alpha and gamma proteobacteria and a small number of Gram-positive bacteria. The alpha chain contains domains for molybdopterin dinucleotide binding and molybdopterin oxidoreductase. The holo-enzyme also contains beta and gamma subunits. The enzyme catalyzes the oxidation of formate (produced from pyruvate during anaerobic growth) to carbon dioxide with the concomitant release of two electrons and two protons. The enzyme's purpose is to allow growth on formate in some circumstances and, in the case of FdhH in gamma proteobacteria, to pass electrons to hydrogenase (by which process acid is neutralized) . The alpha subunit of a version of nitrate reductase is closely related.; GO: 0008863 formate dehydrogenase activity, 0015942 formate metabolic process, 0009326 formate dehydrogenase complex.
Probab=70.91 E-value=2.4 Score=21.42 Aligned_cols=80 Identities=18% Similarity=0.099 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHCCCCCCCCC-----CCHHHHHHHHHHHHHHHHC--CCHHHC-EEEEECCCHHHHH--HHHHHHHCC-C
Q ss_conf 579999999871894216877-----2189999999999999709--882241-1787425425678--999999819-8
Q gi|254780137|r 158 CFEVERILSQKLKIPFLHDDQ-----HGTAVTVTAATLNGMKLVG--KKFSDI-KIVTLGAGAAALA--CLNLLVTMG-V 226 (779)
Q Consensus 158 ~f~i~~~l~~~~~ipvf~DD~-----qGTa~v~lA~llnAl~~~g--k~l~~~-~iv~~GaGaAg~~--~a~ll~~~g-~ 226 (779)
=-++.++|-.. -|=.=|=|. ||-+++.|...+..=--++ .++++. -||++|+-.+-.- ++.-++.+- .
T Consensus 112 e~Y~~QKlAR~-~~GTNNvD~CAR~CH~Ps~~gL~~~~G~GA~s~~~~~ie~a~~ivi~G~N~~esHPvv~~~l~~AKk~ 190 (694)
T TIGR01591 112 ENYLLQKLARA-VLGTNNVDNCARVCHEPSVAGLKQTVGIGAMSNTISDIENADLIVIIGANPAESHPVVASKLMRAKKR 190 (694)
T ss_pred HHHHHHHHHHH-HHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 67899999999-85037745545403787899999762455335520344327758997567655543689999999850
Q ss_pred CCCCEEEEECCC
Q ss_conf 857589995596
Q gi|254780137|r 227 RRENIWVYDLEG 238 (779)
Q Consensus 227 ~~~~i~~~D~~G 238 (779)
.=-.|+++|-+-
T Consensus 191 nGaKiiV~DpR~ 202 (694)
T TIGR01591 191 NGAKIIVIDPRK 202 (694)
T ss_pred CCCEEEEECCCC
T ss_conf 897899975888
No 358
>PRK09126 hypothetical protein; Provisional
Probab=70.82 E-value=7.2 Score=18.12 Aligned_cols=34 Identities=24% Similarity=0.385 Sum_probs=30.0
Q ss_pred HHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf 2411787425425678999999819885758999559
Q gi|254780137|r 201 SDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLE 237 (779)
Q Consensus 201 ~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~ 237 (779)
.+.-|+|.|||-+|...|-.|...|+ ++.++|++
T Consensus 2 m~~DV~IvGaGp~Gl~lA~~La~~G~---~v~viE~~ 35 (392)
T PRK09126 2 MHSDILVVGAGPAGLSFARSLAGSGL---KVTLIERQ 35 (392)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCC---CEEEEECC
T ss_conf 98999999925899999999986899---89999089
No 359
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC; InterPro: IPR011967 This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring . The sequences included in this entry are all found in possible operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN . Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. .
Probab=70.78 E-value=5.3 Score=19.03 Aligned_cols=329 Identities=17% Similarity=0.228 Sum_probs=152.4
Q ss_pred HHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEEC-CCEEECCCCCCCCHH-HHHHHH--------------CCCCCC
Q ss_conf 2241178742542567899999981988575899955-960307873326678-897745--------------088988
Q gi|254780137|r 200 FSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDL-EGLVYEGREKKFDKW-KSVYAQ--------------KSGPKP 263 (779)
Q Consensus 200 l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~-~Gli~~~r~~~~~~~-~~~~a~--------------~~~~~~ 263 (779)
.++++|++.|||+=|-|||+---++|- .+++.|. -+-++..+.. .... +..-.+ --+-.+
T Consensus 3 ~~~v~vaVIGaGaMGaGIA~VAA~aGH---~V~LYD~r~eA~a~a~ag-Ie~~L~~lV~kgkL~a~e~e~~l~Rl~PV~~ 78 (508)
T TIGR02279 3 INVVKVAVIGAGAMGAGIAQVAARAGH---QVLLYDIRAEALARAVAG-IEKRLKSLVEKGKLTAEEAERTLKRLVPVTD 78 (508)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCC---EEEEECCCHHHHHHHHHH-HHHHHHHHHHCCCCCHHHHHHHHHCCCCHHH
T ss_conf 541068996468521038999982598---488722888999999999-9999888752377778888888731787789
Q ss_pred H--------------------------HHHCCCCCEEEECCC---------CCCCCHHHHHHC---CCCC------EEEE
Q ss_conf 8--------------------------886058837862578---------877898899721---8997------7999
Q gi|254780137|r 264 L--------------------------SETMNNADVFLGLSV---------AGALDPAILKFM---AEKP------LIMV 299 (779)
Q Consensus 264 l--------------------------~ea~~~adv~iG~S~---------~g~~t~e~v~~M---~~~P------iIfa 299 (779)
| .|.+-+||.+|..-. .|+=.|+-|.-| |+-| +|==
T Consensus 79 l~alAdAgLvIEAivE~L~VK~aLFaqLe~lc~ad~iiasNTSSlSIta~AAglarP~rvaGlHFFNPAP~MaLVEVVSG 158 (508)
T TIGR02279 79 LEALADAGLVIEAIVENLEVKKALFAQLEELCTADAIIASNTSSLSITALAAGLARPERVAGLHFFNPAPVMALVEVVSG 158 (508)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEEECC
T ss_conf 99986027322467740677799999898636701525623257779999973138770751113486553621566236
Q ss_pred ECCCC--CCCCHHHHHHHCCCEEECCCCCCCCCCCCHHHHHHHHHHH--HHHCCC--CCCCHHHHHH------HHHHHHH
Q ss_conf 17872--0099889985189879805887887743503455665456--751373--0026789999------9999998
Q gi|254780137|r 300 LANPN--PEAMPDEIKKVRPDAMICTGRSDFSNQVNNVLCFPYIFRG--ALDCGA--TAITEEMKVA------AARAMAV 367 (779)
Q Consensus 300 LsNP~--pEi~p~~a~~~~g~aivatGrs~~pnQ~NN~l~FPgif~G--al~~~A--~~Itd~M~~a------Aa~alA~ 367 (779)
|+--- .|+.++.+..| |+.=|-|-+ .|+-+=|=-.=||--=- +|.=+. -..=|..+-- -+-.|-|
T Consensus 159 LaT~~eVae~ly~~a~aW-GK~PVh~~S--TPGFIVNRVARPyYaEalR~L~E~~A~pa~lDA~LRdg~GF~MGpfELtD 235 (508)
T TIGR02279 159 LATEAEVAEQLYETARAW-GKQPVHARS--TPGFIVNRVARPYYAEALRVLEEQVAEPAVLDALLRDGAGFAMGPFELTD 235 (508)
T ss_pred CCCHHHHHHHHHHHHHHC-CCCCCCCCC--CCCCEECCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf 354289999999998732-885632346--98823426567317899987302576846898997505888874466755
Q ss_pred HHCCCCH----HHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH----------
Q ss_conf 7203313----66774138767666752236665467786798888999874213223543225899999----------
Q gi|254780137|r 368 LVRDVPP----DVVFDNFAKESPVFGPNYLIPSPFDPNLISYIAPAVAKAAEEAGVASSPIEDYEVYRDS---------- 433 (779)
Q Consensus 368 la~~~~~----~~~~~~~~~~~~~~g~~yiiP~~fd~r~~~~va~AVa~aA~~sGvAr~pi~d~~~Y~~~---------- 433 (779)
|.-.+|- -+|..||..+ --..|++|..+|+ .-.|--.|||- -+-||.+-+++
T Consensus 236 LIG~DVNfAVTcSVF~Af~~d------rRF~PSlvQqELV-----~aGRLGrKsG~---G~Y~y~e~ae~~vp~e~~s~~ 301 (508)
T TIGR02279 236 LIGHDVNFAVTCSVFDAFYQD------RRFLPSLVQQELV-----IAGRLGRKSGR---GVYDYAEEAEKVVPLEAVSDS 301 (508)
T ss_pred HCCCCCCHHHHHHHHHHHHHC------CCCCCCHHHHHHH-----HCCCCCCCCCC---CCCCHHHHHCCCCCCCCCCCC
T ss_conf 204552300001023201003------4789864458887-----33677452477---410014410014875557888
Q ss_pred HHHHH--CCHHHHHHHHHHHHHCCC----------CC---------EEEEECCCCCHHHHHHHHHHHCCCEEEEEECCHH
Q ss_conf 99862--012568899999972158----------94---------6998247740467999999852750899955989
Q gi|254780137|r 434 LKRFS--FPGRSLMKKIFSIAKGTD----------SK---------RILFSAGEDERVLRATQILIKENIARPVLIGSLL 492 (779)
Q Consensus 434 L~~rl--~~s~~~mr~i~~~AK~~~----------pK---------RIVfaEgeD~rVLrAA~~~~eeGia~PILVG~~e 492 (779)
-+.++ --.=..++|+.+|-++.. .| +++..+|+ -|-+.+.+++.=.-+|+
T Consensus 302 ~~p~~~~~G~~G~~~PL~~RL~~~Gi~V~~~sgmhGk~Gv~~igda~laltdGr-----tA~~rA~e~~~pNLVLl---- 372 (508)
T TIGR02279 302 KSPAVVVVGDLGVLAPLLERLRAAGIKVEKKSGMHGKRGVIQIGDALLALTDGR-----TASARAIEEARPNLVLL---- 372 (508)
T ss_pred CCCEEEEEECHHHHHHHHHHHHHCCCEEEEECCCCCCCCCEEECCEEEEECCCH-----HHHHHHHHHCCCCEEEE----
T ss_conf 887079962601345899999748937987137755656267433767622777-----79999997358983988----
Q ss_pred HHHHHHHHCCCCCCCCCCCEEECCCHHHH-HHHHHHHHHHHHHHCCCCHHHHHH---HHHHCHHHHHHHHHHCCCCCEEE
Q ss_conf 99999998498766546842306202556-789999999987637999899999---98625356789998657210010
Q gi|254780137|r 493 TIQDNIRRHDLQIIATKDFDVIDLNNKQS-LKDYVDSYRSLSAEKGISLDSIYD---LLRSNTTLLGSLALKRGEGDGMI 568 (779)
Q Consensus 493 ~I~~~~~~~gL~l~~~~dieIidp~~~~~-~~~ya~~l~~~~~RKG~~~~~A~~---~vr~d~~~faa~MV~~G~AD~lI 568 (779)
.+-||.+-.+-|-|--..+... ..+-+ -..+||.|.+.....+ ++- +-...|+.+--+|++.
T Consensus 373 -------dl~lDyst~~riai~~a~~~~~sA~r~a---~~~lQ~aG~kV~~iaD~pGl~~----lRTVAMlaNEAaDAvl 438 (508)
T TIGR02279 373 -------DLVLDYSTAKRIAIAAAADTTDSALRKA---VALLQKAGLKVLAIADLPGLVV----LRTVAMLANEAADAVL 438 (508)
T ss_pred -------EEEEECCCCCEEEEEECCCCCCCHHHHH---HHHHHHCCCEEEEECCCCCHHH----HHHHHHHHHHHHHHHH
T ss_conf -------5553203544020011246886068999---9999765975989617531789----9999999999999986
Q ss_pred CCCC
Q ss_conf 0446
Q gi|254780137|r 569 CMCD 572 (779)
Q Consensus 569 ~G~~ 572 (779)
.|+-
T Consensus 439 ~gVa 442 (508)
T TIGR02279 439 QGVA 442 (508)
T ss_pred HHCC
T ss_conf 2013
No 360
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=70.72 E-value=7.2 Score=18.11 Aligned_cols=127 Identities=20% Similarity=0.226 Sum_probs=71.7
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCCCCC----CHHHHCC--CCCEEEEC
Q ss_conf 17874254256789999998198857589995596030787332667889774508898----8888605--88378625
Q gi|254780137|r 204 KIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKSGPK----PLSETMN--NADVFLGL 277 (779)
Q Consensus 204 ~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~~~~----~l~ea~~--~adv~iG~ 277 (779)
||.+.|||.-|.-+++.|..+|+. +|.++|.+-+-..+ |+. |-.|....-.. ...+.++ ++++=|-.
T Consensus 1 KVlvvGaGglG~e~lk~La~~Gvg--~i~ivD~D~Ie~SN----LnR-QfLf~~~diGk~Ka~~a~~~l~~~Np~v~I~~ 73 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFG--EIHIIDLDTIDLSN----LNR-QFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVA 73 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCC--EEEEECCCCCCCCC----CCC-CCCCCHHHCCCCHHHHHHHHHHHHCCCCEEEE
T ss_conf 989988888899999999982898--59997199226101----466-82768221887099999999998888967998
Q ss_pred CCC----CCCCHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHCCCEEECCCCCCCCCCCCHHHHHHHH
Q ss_conf 788----7789889972189977999178720099889985189879805887887743503455665
Q gi|254780137|r 278 SVA----GALDPAILKFMAEKPLIMVLANPNPEAMPDEIKKVRPDAMICTGRSDFSNQVNNVLCFPYI 341 (779)
Q Consensus 278 S~~----g~~t~e~v~~M~~~PiIfaLsNP~pEi~p~~a~~~~g~aivatGrs~~pnQ~NN~l~FPgi 341 (779)
-.. ..|..+.++. -+=|+=+|-|-...-.=+.+....+.-++-+|..-+-+|+--. .||.
T Consensus 74 ~~~~i~~~~~~~~f~~~--~DvVi~alDN~~aR~~vN~~C~~~~~PlIegGt~G~~Gqv~vi--iP~~ 137 (312)
T cd01489 74 YHANIKDPDFNVEFFKQ--FDLVFNALDNLAARRHVNKMCLAADVPLIESGTTGFLGQVQVI--KKGK 137 (312)
T ss_pred ECCCCCCCCCCHHHHHH--CCEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEEE--ECCC
T ss_conf 61676686434988962--9999976678999999999999839975972024641379998--4897
No 361
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=70.68 E-value=7.2 Score=18.10 Aligned_cols=109 Identities=19% Similarity=0.265 Sum_probs=63.6
Q ss_pred HHHHHHHHHHCCCCCCC---CCCCHHHHHHHHHHHHHHH-HCCCHHHCEEEEECCCHHHHH--HHHHHHHCCCCCCCEEE
Q ss_conf 99999998718942168---7721899999999999997-098822411787425425678--99999981988575899
Q gi|254780137|r 160 EVERILSQKLKIPFLHD---DQHGTAVTVTAATLNGMKL-VGKKFSDIKIVTLGAGAAALA--CLNLLVTMGVRRENIWV 233 (779)
Q Consensus 160 ~i~~~l~~~~~ipvf~D---D~qGTa~v~lA~llnAl~~-~gk~l~~~~iv~~GaGaAg~~--~a~ll~~~g~~~~~i~~ 233 (779)
...+.+.+..++||.|- -.|=| =+|+-++.-.+- .++++++.||++.|-+-..++ ...++..+|. ++.+
T Consensus 112 ~~~~~~a~~s~vPVINg~~~~~HPt--QaL~Dl~Ti~E~~~~~~l~~lkia~vGD~~nnv~~Sl~~~~~~~g~---~~~~ 186 (334)
T PRK03515 112 EIVETLAEYAGVPVWNGLTNEFHPT--QLLADLLTMQEHLPGKAFNEMTLAYAGDARNNMGNSLLEAAALTGL---DLRL 186 (334)
T ss_pred HHHHHHHHHCCCCEEECCCCCCCCH--HHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCC---EEEE
T ss_conf 8999999876987664898887867--9999999999985689756648999578765458999999985497---4999
Q ss_pred EECCCEEECCCCCCCCHHHHHHHHCCC-----CCCHHHHCCCCCEEEE
Q ss_conf 955960307873326678897745088-----9888886058837862
Q gi|254780137|r 234 YDLEGLVYEGREKKFDKWKSVYAQKSG-----PKPLSETMNNADVFLG 276 (779)
Q Consensus 234 ~D~~Gli~~~r~~~~~~~~~~~a~~~~-----~~~l~ea~~~adv~iG 276 (779)
|--+|..-+ .+.+. ..+.++..+. ..++.++++++||+..
T Consensus 187 ~~P~~~~p~--~~~~~-~~~~~~~~~g~~i~~~~d~~ea~~~aDviyt 231 (334)
T PRK03515 187 VAPKACWPE--AALVT-ECQALAQKNGGNITLTEDIAEGVKGADFIYT 231 (334)
T ss_pred ECCCCCCCC--HHHHH-HHHHHHHHHCCCEEEECCHHHHHCCCCEEEE
T ss_conf 779756888--78999-9999999719918996045655157878873
No 362
>PRK04965 nitric oxide reductase; Provisional
Probab=70.53 E-value=7.3 Score=18.08 Aligned_cols=42 Identities=17% Similarity=0.071 Sum_probs=31.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCC
Q ss_conf 1178742542567899999981988575899955960307873
Q gi|254780137|r 203 IKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGRE 245 (779)
Q Consensus 203 ~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~ 245 (779)
.+|||.|+|.||+.+++.+....-. ..|.++....-..=+|.
T Consensus 3 ~~IVIIG~G~AG~~aa~~lR~~d~~-~~Itvi~~e~~~~Y~rp 44 (378)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAH-IPITLITADSGDEYNKP 44 (378)
T ss_pred CCEEEECCCHHHHHHHHHHHCCCCC-CCEEEEECCCCCCCCCC
T ss_conf 9999998829999999999711949-86999989999887678
No 363
>PRK03525 crotonobetainyl-CoA:carnitine CoA-transferase; Provisional
Probab=70.48 E-value=7.3 Score=18.07 Aligned_cols=102 Identities=13% Similarity=0.100 Sum_probs=65.5
Q ss_pred CCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCC--EEECCCCC---CCCHHHHHHHHCCC----CCCHHHHC
Q ss_conf 88224117874254256789999998198857589995596--03078733---26678897745088----98888860
Q gi|254780137|r 198 KKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEG--LVYEGREK---KFDKWKSVYAQKSG----PKPLSETM 268 (779)
Q Consensus 198 k~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~G--li~~~r~~---~~~~~~~~~a~~~~----~~~l~ea~ 268 (779)
-+|+-+|||-++..-||=.|..+|-.+|+ .++-+.+-+ =....... ..|.-|+-.+-+.. ..-+.+.+
T Consensus 10 GPL~GirVld~~~~~agP~~~~~LadlGA---eVIKVE~p~~gd~~R~~~~~~~~~nrnKrsi~ldlk~~~G~~i~~~Li 86 (405)
T PRK03525 10 GPLAGLRVVFSGIEIAGPFAGQMFAEWGA---EVIWIENVAWADTIRVQPNYPQLSRRNLHALSLNIFKDEGREAFLKLM 86 (405)
T ss_pred CCCCCCEEEEECCHHHHHHHHHHHHHCCC---EEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHH
T ss_conf 69999889992772089999999998499---399988899988655577751010698858997793867799999999
Q ss_pred CCCCEEEECCCCCC-----CCHHHHHHCCCCCEEEEECC
Q ss_conf 58837862578877-----89889972189977999178
Q gi|254780137|r 269 NNADVFLGLSVAGA-----LDPAILKFMAEKPLIMVLAN 302 (779)
Q Consensus 269 ~~adv~iG~S~~g~-----~t~e~v~~M~~~PiIfaLsN 302 (779)
+.|||||--..||+ +..|-++..|++=|.-.+|-
T Consensus 87 ~~aDV~ien~rpg~~~rlGl~ye~L~~~NP~lIy~sisG 125 (405)
T PRK03525 87 ETTDIFIEASKGPAFARRGITDEVLWQHNPKLVIAHLSG 125 (405)
T ss_pred HHCCCCEECCCCHHHHHHCCCHHHHHCCCCCEEEEEEEE
T ss_conf 728944666884289883465768860699679997663
No 364
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=70.45 E-value=7.3 Score=18.07 Aligned_cols=166 Identities=17% Similarity=0.260 Sum_probs=83.9
Q ss_pred HHHHHHHHHHCCCCCEEEHHHCCCCHHHHHHHHHHHHHCCCCCC---CCCCCHHHHHHHHHHHHHHH--HCCCHHHCEEE
Q ss_conf 99999998708884606222064801579999999871894216---87721899999999999997--09882241178
Q gi|254780137|r 132 DTMVSTIVALEPTFGGINLEDIKAPECFEVERILSQKLKIPFLH---DDQHGTAVTVTAATLNGMKL--VGKKFSDIKIV 206 (779)
Q Consensus 132 ~e~i~~v~~~~p~fg~i~lEDi~~p~~f~i~~~l~~~~~ipvf~---DD~qGTa~v~lA~llnAl~~--~gk~l~~~~iv 206 (779)
|-+.++++.+.--+-+|-.-..+. ...+.+.+..++||.| |..|=|= +|+-++.-.+- .+++++..+|+
T Consensus 86 Esl~DT~~vls~~~D~iviR~~~~----~~~~~la~~~~vPVINg~~~~~HPtQ--aL~Dl~Ti~e~~~~~~~l~glkva 159 (341)
T PRK02255 86 ESIEDTARVLSRMVDIIMARVLRH----QTVVELAKYATVPVINGMSDYNHPTQ--ELGDVFTMLEHLPAGKKLEDCKVV 159 (341)
T ss_pred CCHHHHHHHHHHHCCEEEEEECCC----HHHHHHHHHCCCCEEECCCCCCCCHH--HHHHHHHHHHHHHCCCCCCCCEEE
T ss_conf 669999999986378899993484----67999998679998978998877278--999899999986017984565688
Q ss_pred EECCCHHH-HHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCCC-----CCCHHHHCCCCCEEEEC---
Q ss_conf 74254256-7899999981988575899955960307873326678897745088-----98888860588378625---
Q gi|254780137|r 207 TLGAGAAA-LACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKSG-----PKPLSETMNNADVFLGL--- 277 (779)
Q Consensus 207 ~~GaGaAg-~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~~-----~~~l~ea~~~adv~iG~--- 277 (779)
+.|-++.- -....++..+|. +++++--+|+--. ++.++ .....+...+ ..++.++++++||+.--
T Consensus 160 ~vGD~~nv~~S~~~~~~~~g~---~~~~~~P~~~~~~--~~~~~-~~~~~~~~~g~~i~~~~d~~ea~~~aDvvytd~w~ 233 (341)
T PRK02255 160 FVGDATQVCSSLMFITTKMGM---DFVHFGPKGFQLP--EEHLA-IARENCEVSGGSVLVTDDADEAVKDADFIYTDVWY 233 (341)
T ss_pred EECCCCHHHHHHHHHHHHCCC---EEEEECCCCCCCC--HHHHH-HHHHHHHHCCCEEEEEECHHHHHCCCCEEEEHHHH
T ss_conf 726853448899999997599---8999879746899--99999-99999997399799997888872579878510788
Q ss_pred CC---------------C-CCCCHHHHHHCCCCCEEEEECCCCC-----CCCHHHH
Q ss_conf 78---------------8-7789889972189977999178720-----0998899
Q gi|254780137|r 278 SV---------------A-GALDPAILKFMAEKPLIMVLANPNP-----EAMPDEI 312 (779)
Q Consensus 278 S~---------------~-g~~t~e~v~~M~~~PiIfaLsNP~p-----Ei~p~~a 312 (779)
|- + =.+|+++++.+.++.||+ -|-| ||+.+..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~y~v~~~~m~~a~~~ai~M---HplPa~Rg~EIs~eV~ 286 (341)
T PRK02255 234 GLYEQELSEEERMKIFYPKYQVNPELMAKAGPHAKFM---HCLPASRGEEVTDEVM 286 (341)
T ss_pred HHHHHHHHHHHHHHHHCCCCEECHHHHHCCCCCCEEE---CCCCCCCCCEECHHHH
T ss_conf 8632165589998763446577799994589898998---9998988873077885
No 365
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=70.33 E-value=6.8 Score=18.27 Aligned_cols=35 Identities=31% Similarity=0.544 Sum_probs=30.5
Q ss_pred HHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf 22411787425425678999999819885758999559
Q gi|254780137|r 200 FSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLE 237 (779)
Q Consensus 200 l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~ 237 (779)
+...||.++|-|-.|+++++.|...|. .++++|.+
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~---~v~v~D~~ 39 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFLLKLGA---EVTVSDDR 39 (448)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHCCC---EEEEECCC
T ss_conf 059979999266510999999997798---69998389
No 366
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=70.03 E-value=7.5 Score=18.01 Aligned_cols=34 Identities=12% Similarity=0.244 Sum_probs=26.0
Q ss_pred HHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf 2411787425425678999999819885758999559
Q gi|254780137|r 201 SDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLE 237 (779)
Q Consensus 201 ~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~ 237 (779)
.+--|+|.|+|..|.+||+-+...|. ++.++++.
T Consensus 4 ~e~DVvIIGgGi~Ga~iArdla~rGl---~v~LvEk~ 37 (545)
T PRK11101 4 QETDVIIIGGGATGAGIARDCALRGL---RCILVERH 37 (545)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCC---CEEEEECC
T ss_conf 61768999986899999999986799---39999899
No 367
>TIGR01438 TGR thioredoxin and glutathione reductase; InterPro: IPR006338 This homodimeric, FAD-containing member of the pyridine nucleotide disulphide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-terminal arm of the protein is proposed to allow broad substrate specificity , .; GO: 0016654 oxidoreductase activity acting on NADH or NADPH disulfide as acceptor, 0050660 FAD binding, 0050661 NADP binding, 0006118 electron transport.
Probab=69.93 E-value=6.7 Score=18.34 Aligned_cols=30 Identities=20% Similarity=0.489 Sum_probs=26.3
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCCCEEEEEC
Q ss_conf 178742542567899999981988575899955
Q gi|254780137|r 204 KIVTLGAGAAALACLNLLVTMGVRRENIWVYDL 236 (779)
Q Consensus 204 ~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~ 236 (779)
=.|+.|+|+.|+++++---.+|. ++.++|-
T Consensus 4 DlivIGgGsGGla~aKeAA~~ga---~V~l~D~ 33 (513)
T TIGR01438 4 DLIVIGGGSGGLAAAKEAAKYGA---KVLLLDY 33 (513)
T ss_pred CEEEECCCCCHHHHHHHHHHCCC---CEEEEEE
T ss_conf 27998589734689999986099---1899963
No 368
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=69.89 E-value=7.5 Score=17.99 Aligned_cols=12 Identities=25% Similarity=0.119 Sum_probs=6.3
Q ss_pred CCCHHHHHHCCC
Q ss_conf 789889972189
Q gi|254780137|r 282 ALDPAILKFMAE 293 (779)
Q Consensus 282 ~~t~e~v~~M~~ 293 (779)
.-.+||++.+.+
T Consensus 276 ~~N~em~~~~~~ 287 (579)
T PRK06134 276 PHDPARRAELFP 287 (579)
T ss_pred CCCHHHHHHHCC
T ss_conf 659999986241
No 369
>PRK07190 hypothetical protein; Provisional
Probab=69.86 E-value=7.5 Score=17.99 Aligned_cols=49 Identities=27% Similarity=0.381 Sum_probs=35.2
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEEC-CCCCCCCHHHHH
Q ss_conf 1178742542567899999981988575899955960307-873326678897
Q gi|254780137|r 203 IKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYE-GREKKFDKWKSV 254 (779)
Q Consensus 203 ~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~-~r~~~~~~~~~~ 254 (779)
.-|+|.|||-.|...|-+|...|+ ++.++|++--.+. .|...+++.-.+
T Consensus 6 tDVlIVGaGPvGL~lA~~La~~Gv---~v~VlEr~~~~~~~~RA~~l~~rtle 55 (480)
T PRK07190 6 ADVVIVGAGPVGLMCAYLGQRCGI---NTVIVDKSDGPLEVGRADALNARTLQ 55 (480)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCC---CEEEEECCCCCCCCCCEEEECHHHHH
T ss_conf 448999938899999999988799---99999699999999867575689999
No 370
>PRK06194 hypothetical protein; Provisional
Probab=69.68 E-value=7.6 Score=17.96 Aligned_cols=36 Identities=19% Similarity=0.306 Sum_probs=22.9
Q ss_pred CCHHHCEEEEECCCHH-HHHHHHHHHHCCCCCCCEEEEEC
Q ss_conf 8822411787425425-67899999981988575899955
Q gi|254780137|r 198 KKFSDIKIVTLGAGAA-ALACLNLLVTMGVRRENIWVYDL 236 (779)
Q Consensus 198 k~l~~~~iv~~GaGaA-g~~~a~ll~~~g~~~~~i~~~D~ 236 (779)
++|+.-.++|-||++. |-++++.+...|. +++++|+
T Consensus 2 ~~l~gKvavITGassGIG~a~A~~la~~Ga---~Vvl~d~ 38 (301)
T PRK06194 2 KDFAGKVAVITGAASGFGREFARIGARLGM---KLVLADV 38 (301)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEEC
T ss_conf 898999899927377999999999998799---8999979
No 371
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=69.58 E-value=7.6 Score=17.95 Aligned_cols=22 Identities=18% Similarity=0.448 Sum_probs=8.9
Q ss_pred EEEECCCHHHHHHHHHHHHCCC
Q ss_conf 7874254256789999998198
Q gi|254780137|r 205 IVTLGAGAAALACLNLLVTMGV 226 (779)
Q Consensus 205 iv~~GaGaAg~~~a~ll~~~g~ 226 (779)
|||.|+|.||+..|-.....|.
T Consensus 9 VvVVG~G~AGl~AAi~Aae~Ga 30 (552)
T PRK12844 9 VVVVGSGGGGMVAALAAASSGL 30 (552)
T ss_pred EEEECCCHHHHHHHHHHHHCCC
T ss_conf 7998967899999999998899
No 372
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=69.35 E-value=7.7 Score=17.91 Aligned_cols=38 Identities=16% Similarity=0.217 Sum_probs=29.1
Q ss_pred HHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf 22411787425425678999999819885758999559
Q gi|254780137|r 200 FSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLE 237 (779)
Q Consensus 200 l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~ 237 (779)
|+...|+|.|||-+|...|-.|..+|...-++.++++.
T Consensus 1 M~~~DV~IvGaGp~Gl~lAl~L~~~g~~~~~v~viE~~ 38 (395)
T PRK05732 1 MSRMDVIIVGGGMAGATLALALSRLSHGRLPVALIEAF 38 (395)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECC
T ss_conf 97189899993899999999999618899749999378
No 373
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=69.30 E-value=6.4 Score=18.46 Aligned_cols=26 Identities=12% Similarity=0.180 Sum_probs=12.2
Q ss_pred HCCCCCEEEHHHCCCCHHHHHHHHHHH
Q ss_conf 088846062220648015799999998
Q gi|254780137|r 141 LEPTFGGINLEDIKAPECFEVERILSQ 167 (779)
Q Consensus 141 ~~p~fg~i~lEDi~~p~~f~i~~~l~~ 167 (779)
+...| -+.-||+..+++-...++|++
T Consensus 60 Lg~nF-fl~~~diGk~Raea~~~~L~e 85 (425)
T cd01493 60 LGNNF-FLDASSLGKSRAEATCELLQE 85 (425)
T ss_pred CCCCC-CCCHHHCCCHHHHHHHHHHHH
T ss_conf 57661-566778588399999999998
No 374
>KOG2550 consensus
Probab=69.13 E-value=7.8 Score=17.88 Aligned_cols=233 Identities=21% Similarity=0.259 Sum_probs=122.0
Q ss_pred EECCCCEECC-CCCCCCCC--CCCHHH-----HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCC--EEEHHHC
Q ss_conf 9817850025-42205105--830010-----089999862698526542388988999999987088846--0622206
Q gi|254780137|r 84 VVSNGSAVLG-LGDIGPLA--SKPVME-----GKAVLFKKFAGINVFDIEINAKDVDTMVSTIVALEPTFG--GINLEDI 153 (779)
Q Consensus 84 VvtdGt~vLG-LGdiG~~a--~~pvme-----GK~~L~k~~agid~~~i~~~~~d~~e~i~~v~~~~p~fg--~i~lEDi 153 (779)
|+|--+.|-- |-.-++.+ |+||-| +|++=+..-.+||-+ +|...+++-|....|..+ ||.||
T Consensus 120 v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~------~~~~~~~~~vmt~~~~~~~~gi~l~-- 191 (503)
T KOG2550 120 VISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFL------EDNSLLVSDVMTKNPVTGAQGITLK-- 191 (503)
T ss_pred CCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEHHHHHHH------HCCCCHHHHHHCCCCCCCCCCCCHH--
T ss_conf 03775431055652065663354211577546515777742023455------3455112433034430144446677--
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH--HCCCHHHCEEEEECCCHH----HHHHHHHHHHCCCC
Q ss_conf 480157999999987189421687721899999999999997--098822411787425425----67899999981988
Q gi|254780137|r 154 KAPECFEVERILSQKLKIPFLHDDQHGTAVTVTAATLNGMKL--VGKKFSDIKIVTLGAGAA----ALACLNLLVTMGVR 227 (779)
Q Consensus 154 ~~p~~f~i~~~l~~~~~ipvf~DD~qGTa~v~lA~llnAl~~--~gk~l~~~~iv~~GaGaA----g~~~a~ll~~~g~~ 227 (779)
+.=+|+++-++- ..|+.||+-.=-++++..-|.-.-.. .+| ...+-...||+.. .--+.+++..+|+
T Consensus 192 ---~~neiL~~~kkG-kl~iv~~~gelva~~~rtDl~k~~~yPlask--~~~kqll~gAaiGTre~dK~rl~ll~~aGv- 264 (503)
T KOG2550 192 ---EANEILKKIKKG-KLPVVDDKGELVAMLSRTDLMKNRDYPLASK--DSTKQLLCGAAIGTRDDDKERLDLLVQAGV- 264 (503)
T ss_pred ---HHHHHHHHHHCC-CCCEECCCCCEEEEEEHHHHHHHCCCCCCCC--CCCCCEEEEECCCCCCHHHHHHHHHHHCCC-
T ss_conf ---889998763148-6523436776233433345665027875556--754135651013666301677888663488-
Q ss_pred CCCEEEEECCCEEECCCCCCCCHHHHHHHH---CCC--C-------CCHH---HHC-CCCCEE-EECCCCC-CCCHHHHH
Q ss_conf 575899955960307873326678897745---088--9-------8888---860-588378-6257887-78988997
Q gi|254780137|r 228 RENIWVYDLEGLVYEGREKKFDKWKSVYAQ---KSG--P-------KPLS---ETM-NNADVF-LGLSVAG-ALDPAILK 289 (779)
Q Consensus 228 ~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~---~~~--~-------~~l~---ea~-~~adv~-iG~S~~g-~~t~e~v~ 289 (779)
+++++|| ..| ...++..+-+ ++- . -+-+ +.| .|+|.| +|...+- ..|+|
T Consensus 265 --dvviLDS----SqG----nS~~qiemik~iK~~yP~l~ViaGNVVT~~qa~nLI~aGaDgLrVGMGsGSiCiTqe--- 331 (503)
T KOG2550 265 --DVVILDS----SQG----NSIYQLEMIKYIKETYPDLQIIAGNVVTKEQAANLIAAGADGLRVGMGSGSICITQK--- 331 (503)
T ss_pred --CEEEEEC----CCC----CCHHHHHHHHHHHHHCCCCEEECCCEEEHHHHHHHHHCCCCEEEECCCCCCEEEECE---
T ss_conf --6899966----888----504579999999866888634316553388899998736760575255675054530---
Q ss_pred HCCCCCEEEEECCCCCCCCHHHH--HHHCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 21899779991787200998899--8518987980588788774350345566545675137300267899999
Q gi|254780137|r 290 FMAEKPLIMVLANPNPEAMPDEI--KKVRPDAMICTGRSDFSNQVNNVLCFPYIFRGALDCGATAITEEMKVAA 361 (779)
Q Consensus 290 ~M~~~PiIfaLsNP~pEi~p~~a--~~~~g~aivatGrs~~pnQ~NN~l~FPgif~Gal~~~A~~Itd~M~~aA 361 (779)
+.|.--|---.-++.+ .+-.|.-++|.|- +-|+ |-.--||..+|+++-.+=++|+
T Consensus 332 -------vma~GrpQ~TAVy~va~~A~q~gvpviADGG------i~~~----Ghi~KAl~lGAstVMmG~lLAg 388 (503)
T KOG2550 332 -------VMACGRPQGTAVYKVAEFANQFGVPCIADGG------IQNV----GHVVKALGLGASTVMMGGLLAG 388 (503)
T ss_pred -------EEECCCCCCCCHHHHHHHHHHCCCCEECCCC------CCCC----HHHHHHHHCCCHHHHCCCHHCC
T ss_conf -------1232677620032699999764996550687------5873----1778887538506310411010
No 375
>pfam10223 DUF2181 Uncharacterized conserved protein (DUF2181). This is region of approximately 250 residues conserved from worms to humans. Its function is unknown.
Probab=69.12 E-value=7.3 Score=18.06 Aligned_cols=63 Identities=25% Similarity=0.370 Sum_probs=39.8
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCEEEEECCC-CCHHHHHHHHHHHCCCCCEEEHHHCCCCHHHH----HHHHHHHHHCCC
Q ss_conf 5105830010089999862698526542388-98899999998708884606222064801579----999999871894
Q gi|254780137|r 98 GPLASKPVMEGKAVLFKKFAGINVFDIEINA-KDVDTMVSTIVALEPTFGGINLEDIKAPECFE----VERILSQKLKIP 172 (779)
Q Consensus 98 G~~a~~pvmeGK~~L~k~~agid~~~i~~~~-~d~~e~i~~v~~~~p~fg~i~lEDi~~p~~f~----i~~~l~~~~~ip 172 (779)
|..-++|||- -|-.++. ..-+||.+.|... --||-| |||+-++|+ +++.....++.|
T Consensus 40 ~~~~~~PVMa--------------HPP~~~SDlTL~e~L~~v~~~---~KGiKL-DFKS~eav~~sl~~L~~~~~~~~~P 101 (244)
T pfam10223 40 GNEREVPIMA--------------HPPAIYSDITLEEWLEEVLKS---QKGIKL-DFKSIEAVEPSLDLLRNIYDPLKRP 101 (244)
T ss_pred CCCCCCEEEC--------------CCCCCCCCCCHHHHHHHHHHH---CCCEEE-EEEHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 7789971355--------------999886635399999999851---883578-7502633206999999865304688
Q ss_pred C-CCCCC
Q ss_conf 2-16877
Q gi|254780137|r 173 F-LHDDQ 178 (779)
Q Consensus 173 v-f~DD~ 178 (779)
| +|-||
T Consensus 102 vWiNADI 108 (244)
T pfam10223 102 VWINADI 108 (244)
T ss_pred EEEEEEC
T ss_conf 0574002
No 376
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=69.01 E-value=7.8 Score=17.87 Aligned_cols=35 Identities=17% Similarity=0.225 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHCCC-EEEEEECC---HHHHHHHHHHCCC
Q ss_conf 46799999985275-08999559---8999999998498
Q gi|254780137|r 469 RVLRATQILIKENI-ARPVLIGS---LLTIQDNIRRHDL 503 (779)
Q Consensus 469 rVLrAA~~~~eeGi-a~PILVG~---~e~I~~~~~~~gL 503 (779)
..++|+..+.+..- .+-+++|+ .+.+++.++++++
T Consensus 219 ~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l 257 (377)
T cd03798 219 YLIEALARLLKKRPDVHLVIVGDGPLREALEALAAELGL 257 (377)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
T ss_conf 999999998874888522432682788899999886188
No 377
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=68.67 E-value=7.9 Score=17.82 Aligned_cols=36 Identities=17% Similarity=0.048 Sum_probs=30.0
Q ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHH-HHHHHHHCC
Q ss_conf 773499974736889898899999999-999999818
Q gi|254780137|r 606 RDNFLFFTDTHVSAEPSAMEIADSTIL-ASQAICSLG 641 (779)
Q Consensus 606 ~~~~lFiaDtaVNi~PtaEqLAdIa~~-aa~~ar~lG 641 (779)
.+|++++.|++=-..|..-|=+..++. ++-+++.|+
T Consensus 299 ~GRVvLiGDAAHam~P~~GQGa~~AiEDA~vLa~~L~ 335 (414)
T TIGR03219 299 HGRVALIGDAAHAMLPHQGAGAGQGLEDAYFLARLLG 335 (414)
T ss_pred CCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 3868998402244687756517889999999999874
No 378
>TIGR02731 phytoene_desat phytoene desaturase; InterPro: IPR014102 Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme phytoene desaturase (also called phytoene dehydrogenase). This HMM does not include plant chloroplast transit peptides and the entry does not contain zeta-carotene desaturase, which is a closely related family in the same pathway..
Probab=68.61 E-value=6.1 Score=18.61 Aligned_cols=34 Identities=26% Similarity=0.491 Sum_probs=26.5
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEE
Q ss_conf 1787425425678999999819885758999559603
Q gi|254780137|r 204 KIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLV 240 (779)
Q Consensus 204 ~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli 240 (779)
|+++.|||-||++|++.|..+|-. =+++.++.++
T Consensus 1 ~v~~aGaGlaGl~~akyl~daGh~---Pi~~e~~~vl 34 (454)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHT---PIVLEARDVL 34 (454)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCC---CEEEECHHHC
T ss_conf 957722745567788787635896---2686321003
No 379
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=68.50 E-value=7 Score=18.20 Aligned_cols=43 Identities=21% Similarity=0.414 Sum_probs=36.8
Q ss_pred CCCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEE
Q ss_conf 988224117874254256789999998198857589995596030
Q gi|254780137|r 197 GKKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVY 241 (779)
Q Consensus 197 gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~ 241 (779)
-+++.+.|+.+.|+|.=|..+++.+..+|+. +++++|.+=+-.
T Consensus 25 q~~l~~s~vlvvG~GglG~~~~~~la~aGvg--~l~i~D~d~v~~ 67 (254)
T COG0476 25 QQKLKDSRVLVVGAGGLGSPAAKYLALAGVG--KLTIVDFDTVEL 67 (254)
T ss_pred HHHHHHCEEEEECCCCCCCHHHHHHHHCCCC--EEEEEECCEEEE
T ss_conf 7877648289977763351999999982698--599985885770
No 380
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=68.13 E-value=8.1 Score=17.75 Aligned_cols=37 Identities=16% Similarity=0.179 Sum_probs=28.6
Q ss_pred CCHHHCEEEEECCCHH-HHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf 8822411787425425-678999999819885758999559
Q gi|254780137|r 198 KKFSDIKIVTLGAGAA-ALACLNLLVTMGVRRENIWVYDLE 237 (779)
Q Consensus 198 k~l~~~~iv~~GaGaA-g~~~a~ll~~~g~~~~~i~~~D~~ 237 (779)
++|+.-.++|.|++.. |-++++.|...|. +++++|++
T Consensus 2 ~~L~gK~alITGgs~GIG~aia~~la~~G~---~V~~~~r~ 39 (253)
T PRK12826 2 RDLMGRVALVTGAARGIGRAIAVRFAADGA---DVIVVDIC 39 (253)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEECC
T ss_conf 988998899948977899999999998799---89999898
No 381
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=67.95 E-value=8.2 Score=17.72 Aligned_cols=88 Identities=15% Similarity=0.091 Sum_probs=37.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHH-HHHHHHCCCCCEEEEECCCCCHHHHHH-
Q ss_conf 546778679888899987421322354322589999999862012568899-999972158946998247740467999-
Q gi|254780137|r 397 PFDPNLISYIAPAVAKAAEEAGVASSPIEDYEVYRDSLKRFSFPGRSLMKK-IFSIAKGTDSKRILFSAGEDERVLRAT- 474 (779)
Q Consensus 397 ~fd~r~~~~va~AVa~aA~~sGvAr~pi~d~~~Y~~~L~~rl~~s~~~mr~-i~~~AK~~~pKRIVfaEgeD~rVLrAA- 474 (779)
+|.|. +|-.-|++|+--+-.+..|-..++ +.+|...+..-. +--| |-.+||-.+- -|+-+.-.-||+=-..
T Consensus 627 ~~~~~---e~~~~v~~a~~yt~~~~~~~kIl~--k~~La~~i~ef~-V~AP~VAkkakPGQF-VIvr~dEkGERIPLTIa 699 (944)
T PRK12779 627 PFTPA---EIKTRVERAARYTELGQIPQTIVG--KVPLAGGIVEFT-VRAPMVARSAQAGQF-VRVLPWEKGELIPLTLA 699 (944)
T ss_pred CCCHH---HHHHHHHHHHHHHHHCCCHHHHHH--HHHCCCCEEEEE-EECHHHHHHCCCCCE-EEEEECCCCCCCCCCCC
T ss_conf 99989---999999999876663026487875--551457459999-978577602699987-99985899873686413
Q ss_pred HHHHHCCCEEEEE--ECCH
Q ss_conf 9998527508999--5598
Q gi|254780137|r 475 QILIKENIARPVL--IGSL 491 (779)
Q Consensus 475 ~~~~eeGia~PIL--VG~~ 491 (779)
--=.+.|.+.-|. ||.-
T Consensus 700 D~D~EkGtItiV~Q~vGkS 718 (944)
T PRK12779 700 DWDAEKGTIDLVVQGMGTS 718 (944)
T ss_pred CCCCCCCEEEEEEEECCHH
T ss_conf 4556789799999963876
No 382
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=67.83 E-value=8.3 Score=17.71 Aligned_cols=192 Identities=23% Similarity=0.269 Sum_probs=95.3
Q ss_pred HHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHC-----------CCC-CCHHHHC
Q ss_conf 2411787425425678999999819885758999559603078733266788977450-----------889-8888860
Q gi|254780137|r 201 SDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQK-----------SGP-KPLSETM 268 (779)
Q Consensus 201 ~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~-----------~~~-~~l~ea~ 268 (779)
..+.|-+.|+|-||.-.|-++...|++ +.+..-++.--+.- ++...||+- ++. +-|.+-+
T Consensus 2 ~~~~i~VIGaGLAGSEAAwqiA~~Gv~---V~L~EMRp~k~Tpa-----H~td~fAELVCSNSlr~~~~~navGlLk~EM 73 (439)
T COG1206 2 MQQPINVIGAGLAGSEAAWQIAKRGVP---VILYEMRPVKGTPA-----HKTDNFAELVCSNSLRSDALTNAVGLLKAEM 73 (439)
T ss_pred CCCCEEEECCCCCCCHHHHHHHHCCCC---EEEEECCCCCCCCC-----CCCCCHHHHEECCCCCCCHHHHHHHHHHHHH
T ss_conf 877258975654451999999876983---79997045668975-----4456524302125546403444457889999
Q ss_pred C--------CCC---EEEE--CCC-CCCCCHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHCCCEEECCCCCCCCCCCCH
Q ss_conf 5--------883---7862--578-8778988997218997799917872009988998518987980588788774350
Q gi|254780137|r 269 N--------NAD---VFLG--LSV-AGALDPAILKFMAEKPLIMVLANPNPEAMPDEIKKVRPDAMICTGRSDFSNQVNN 334 (779)
Q Consensus 269 ~--------~ad---v~iG--~S~-~g~~t~e~v~~M~~~PiIfaLsNP~pEi~p~~a~~~~g~aivatGrs~~pnQ~NN 334 (779)
. -|| |=-| +.+ .+.|++++-+....||.|=-.---..|++|| |-.|+|||----|
T Consensus 74 R~lgSlii~~Ad~~~VPAGgALAVDR~~Fs~~vT~~l~~hpli~vireEvt~iP~d------g~~vIATGPLTs~----- 142 (439)
T COG1206 74 RLLGSLIIEAADKHRVPAGGALAVDRDGFSQAVTEKLENHPLIEVIREEVTEIPPD------GITVIATGPLTSD----- 142 (439)
T ss_pred HHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHCCCCEEEECCCCCCCCCC------CCEEEECCCCCCH-----
T ss_conf 97211786641540688876046617677899999985399779871101468998------8579960898978-----
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 3455665456751373002678999999999987203313667741387676667-522366654677867988889998
Q gi|254780137|r 335 VLCFPYIFRGALDCGATAITEEMKVAAARAMAVLVRDVPPDVVFDNFAKESPVFG-PNYLIPSPFDPNLISYIAPAVAKA 413 (779)
Q Consensus 335 ~l~FPgif~Gal~~~A~~Itd~M~~aAa~alA~la~~~~~~~~~~~~~~~~~~~g-~~yiiP~~fd~r~~~~va~AVa~a 413 (779)
+|...-+.+|.+=-+.=-.|+|-.+..+.-| .-.+|...+-.-| .+| |-+|++..-....-.|.-+|
T Consensus 143 ----------~La~~i~~ltG~d~l~FyDAaAPIi~~dSId-md~~~~~sRYdKg~a~Y-iNCPmtkEey~~F~eaL~~a 210 (439)
T COG1206 143 ----------ALAEKIKELTGEDYLYFYDAAAPIIEFDSID-MDKAYLKSRYDKGEADY-INCPMTKEEYLAFYEALIEA 210 (439)
T ss_pred ----------HHHHHHHHHHCCCEEEEECCCCCEEECCCCC-HHHHHHHHCCCCCCCHH-HCCCCCHHHHHHHHHHHHHC
T ss_conf ----------8999999860875277621247433205543-47777650035564112-06988899999999999743
Q ss_pred HHHCCCCCCCCCCHHH
Q ss_conf 7421322354322589
Q gi|254780137|r 414 AEEAGVASSPIEDYEV 429 (779)
Q Consensus 414 A~~sGvAr~pi~d~~~ 429 (779)
- +.|..||+.
T Consensus 211 e------~~~~k~fEk 220 (439)
T COG1206 211 E------KAPLKDFEK 220 (439)
T ss_pred C------CCCHHHHCC
T ss_conf 4------578344125
No 383
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=67.61 E-value=8.3 Score=17.68 Aligned_cols=15 Identities=13% Similarity=0.158 Sum_probs=8.9
Q ss_pred CHHHHHHHHHHCCCC
Q ss_conf 989999999984987
Q gi|254780137|r 490 SLLTIQDNIRRHDLQ 504 (779)
Q Consensus 490 ~~e~I~~~~~~~gL~ 504 (779)
+-+-|++++++++++
T Consensus 376 ~adTleeLA~~~gi~ 390 (506)
T PRK06481 376 EGKTIDELAKKINVP 390 (506)
T ss_pred CCCCHHHHHHHCCCC
T ss_conf 479799999871989
No 384
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase; InterPro: IPR005758 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC) and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales . This entry represents UDP-N-acetylmuramate-alanine ligase (MurC). MurC is an essential, cytoplasmic peptidoglycan biosynthetic enzyme, catalyzes the ATP-dependent ligation of L-alanine (Ala) and UDP-N-acetylmuramic acid (UNAM) to form UDP-N-acetylmuramyl-L-alanine (UNAM-Ala). The enzyme is a nonribosomal peptide ligase which utilises ATP to form an amide bond between L-alanine and UNAM.1 Mechanistic studies on the Escherichia coli MurC enzyme using oxygen isotope analyses demonstrated that the enzyme-catalyzed reaction proceeds through an acyl phosphate UNAM intermediate prior to L-alanine addition.; GO: 0005524 ATP binding, 0008763 UDP-N-acetylmuramate-L-alanine ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm.
Probab=67.41 E-value=8.4 Score=17.65 Aligned_cols=436 Identities=14% Similarity=0.124 Sum_probs=200.3
Q ss_pred EEEEECCCHHHH-HHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCCCCC-CHHHHCCC-----CCEEEE
Q ss_conf 178742542567-89999998198857589995596030787332667889774508898-88886058-----837862
Q gi|254780137|r 204 KIVTLGAGAAAL-ACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKSGPK-PLSETMNN-----ADVFLG 276 (779)
Q Consensus 204 ~iv~~GaGaAg~-~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~~~~-~l~ea~~~-----adv~iG 276 (779)
+|=|.|=|-+|| |+|+.|.+.|. ++--+|-.--.|.. ..|..... .--.+ --.+-|.. +||.+.
T Consensus 1 ~iHFvGIGG~GMSglA~~L~~~G~---~VsGSD~~~~~y~t--~~L~~~Gi----~I~~g~h~~~n~~~~p~g~~~vVv~ 71 (491)
T TIGR01082 1 KIHFVGIGGIGMSGLAEILLNRGY---KVSGSDIAENAYTT--KRLEALGI----KIYIGEHSAENLDDLPTGAADVVVV 71 (491)
T ss_pred CEEEEECCHHCHHHHHHHHHHCCC---CEEEEECCCCCCHH--HHHHHCCC----EECCCCCCHHHHCCCCCCCCCEEEE
T ss_conf 957896062034489999985789---08772033563158--99986787----6627996779820367897437998
Q ss_pred C-CCCCCCCHHHHHHCCCC-CEEEEECCCCCCCCHHHHHHH-CCCEEECC-CCCCC---CCCCCHHHHH-HHHHHH----
Q ss_conf 5-78877898899721899-779991787200998899851-89879805-88788---7743503455-665456----
Q gi|254780137|r 277 L-SVAGALDPAILKFMAEK-PLIMVLANPNPEAMPDEIKKV-RPDAMICT-GRSDF---SNQVNNVLCF-PYIFRG---- 344 (779)
Q Consensus 277 ~-S~~g~~t~e~v~~M~~~-PiIfaLsNP~pEi~p~~a~~~-~g~aivat-Grs~~---pnQ~NN~l~F-Pgif~G---- 344 (779)
. +.=.-=.+|+++.+.++ ||| |-+|+..|.-+.. .+-+|-+| |-+-. -.++=+-+.- |=++-|
T Consensus 72 S~~Ai~~~NpEi~~A~~~~IPv~-----~R~~~Lael~~~~k~~iaVaGtHGKTTTTamia~~~~~aGLdPt~~~GG~~~ 146 (491)
T TIGR01082 72 SAAAIKEDNPEIVEAKERGIPVI-----RRAEMLAELMRKRKESIAVAGTHGKTTTTAMIAVILKEAGLDPTVIVGGEVK 146 (491)
T ss_pred EEECCCCCCHHHHHHHHCCCCEE-----CHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCCC
T ss_conf 64033788888999996488813-----3789999998620870799836872568999999998449997689866436
Q ss_pred HHHCCCCCCC-HHHHHHHHHHHHHHHCCCCHH--HHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 7513730026-789999999999872033136--6774138767666752236665467786798888999874213223
Q gi|254780137|r 345 ALDCGATAIT-EEMKVAAARAMAVLVRDVPPD--VVFDNFAKESPVFGPNYLIPSPFDPNLISYIAPAVAKAAEEAGVAS 421 (779)
Q Consensus 345 al~~~A~~It-d~M~~aAa~alA~la~~~~~~--~~~~~~~~~~~~~g~~yiiP~~fd~r~~~~va~AVa~aA~~sGvAr 421 (779)
.....|+.=+ .+.++| -.+++| . -=+.|.|.+.|=+ -
T Consensus 147 ~~~~Na~~g~~~~~lva---------EaDESd~~~-------sFl~~~P~~ai~T------------------------N 186 (491)
T TIGR01082 147 EAGTNARLGSSGEYLVA---------EADESDRSA-------SFLHLQPEVAIVT------------------------N 186 (491)
T ss_pred CCCCCEEECCCCCEEEE---------EEEECCCCC-------CHHCCCCCEEEEC------------------------C
T ss_conf 65774357146867999---------987237764-------0120698579974------------------------7
Q ss_pred CCCCCHH-HHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Q ss_conf 5432258-999999986201256889999997215894699824774046799999985275089995598999999998
Q gi|254780137|r 422 SPIEDYE-VYRDSLKRFSFPGRSLMKKIFSIAKGTDSKRILFSAGEDERVLRATQILIKENIARPVLIGSLLTIQDNIRR 500 (779)
Q Consensus 422 ~pi~d~~-~Y~~~L~~rl~~s~~~mr~i~~~AK~~~pKRIVfaEgeD~rVLrAA~~~~eeGia~PILVG~~e~I~~~~~~ 500 (779)
..-+-+| .|-.++++...-=..++ ++.. +.-.++...||+.+.+-+..+.+.+.-.+|.=|=..
T Consensus 187 ie~DH~D~tY~~~~E~~~~aF~~F~----~~l~---~~G~~v~c~DD~~~~~l~~~~~~~r~d~~~~y~~~~-------- 251 (491)
T TIGR01082 187 IEPDHLDNTYGSSLERLKAAFEKFI----HNLP---FYGLAVICADDPVLRKLVPKATESRKDVVITYGGSG-------- 251 (491)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHH----HHCC---CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCC--------
T ss_conf 7743477666457899999999999----8278---887999983865478776355533870478668777--------
Q ss_pred CCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHH------HCCCCHHHHHHHHHHCHHHHHHHHHHCCC-CCEEECCCCC
Q ss_conf 4987665468423062025567899999999876------37999899999986253567899986572-1001004467
Q gi|254780137|r 501 HDLQIIATKDFDVIDLNNKQSLKDYVDSYRSLSA------EKGISLDSIYDLLRSNTTLLGSLALKRGE-GDGMICMCDS 573 (779)
Q Consensus 501 ~gL~l~~~~dieIidp~~~~~~~~ya~~l~~~~~------RKG~~~~~A~~~vr~d~~~faa~MV~~G~-AD~lI~G~~~ 573 (779)
...++.+++...+...-+++-.....+. ..-+....-=+- +=-|..||..|..-. .| .-|-
T Consensus 252 ------~~~~~~~~~~~~~~~~~~f~v~~~~~~~~~~~~G~~~~~~~~pG~H--NvLNAlAA~ava~~~g~~--~~G~-- 319 (491)
T TIGR01082 252 ------EDADIRAENIQQSGAEFEFSVRLKGKLGEATTEGPLEFKLNLPGRH--NVLNALAAIAVALELGLD--FYGK-- 319 (491)
T ss_pred ------CCCEEEEEEEEECCCEEEEEEEECCCCCCCEEEEEEEEEEECCCCC--CHHHHHHHHHHHHHHCCC--CCCC--
T ss_conf ------6414778874322645899999704522011100279998038720--067899999888872212--3685--
Q ss_pred CCCHHHHHHHHHHCCCCCCCCC-EEEEECCCCC---CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHC-CC-CCCEE
Q ss_conf 7740467777763068766850-1210013557---77349997473688989889999999999999981-89-97299
Q gi|254780137|r 574 ESGYNSHLTDIHKIIGMGLGIS-HYSAMSMCIV---RDNFLFFTDTHVSAEPSAMEIADSTILASQAICSL-GM-RPKVS 647 (779)
Q Consensus 574 t~~y~~~lr~~~~vIG~~~g~~-~vs~~~il~~---~~~~lFiaDtaVNi~PtaEqLAdIa~~aa~~ar~l-Gi-ePkVA 647 (779)
...++...+++.+--=.|++ ++.-+.-... .+..+++=|=+=|+. + +..+.+.||.+ .- .=||=
T Consensus 320 --~~~~~~~~I~~~L~~F~G~~RRf~~~g~~~~~~n~g~~~~~DDYAHHPt----E----i~aTl~aAr~~~~~k~~r~v 389 (491)
T TIGR01082 320 --VIVDFLEAIKRALANFQGVKRRFEILGECNGGNNNGTVLLIDDYAHHPT----E----IKATLAAARQVYPDKNRRIV 389 (491)
T ss_pred --EEEEHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCEEEEEECCCCCHH----H----HHHHHHHHHHHHCCCCCEEE
T ss_conf --5641589999998506897310120100278987527999965899978----9----99999999875211795799
Q ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHH-HC-CCCEE------ECCCCHHHHCCHHHHHHCCCCCCCCCCCCEEECCCHHH
Q ss_conf 997025578889778999999999987-37-99599------86730465329898963089987777777788189128
Q gi|254780137|r 648 VLFHSNSGSHCIKSSLKMRDSFEKICE-LS-KNLEV------DAIVQEEVCLSEIFCDKDVPNTSSSQDAQLLVFPNIDS 719 (779)
Q Consensus 648 lLS~SnfGs~~~~s~~kvr~A~eil~~-~~-pd~~V------DGemq~D~AL~~~ia~~K~p~S~laG~ANVLIfPnLeA 719 (779)
++ |=...--++. .-.-+..+- +. -|..| -||=-..-+-...++++. - .-.+.-+.--+|++..
T Consensus 390 ~~----FQPHrYsRT~--~~~~~F~~~L~~haD~l~~~diY~A~E~~~~g~~~~~l~~~~-~--~~~~~~~~~f~~~~~~ 460 (491)
T TIGR01082 390 VV----FQPHRYSRTK--DLFDDFAKVLSDHADELILLDIYAAGEEPIAGIDGKSLARKI-T--QKKGKEEPYFVPDLAE 460 (491)
T ss_pred EE----ECCCCHHHHH--HHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHH-H--HCCCCCCCCCCCHHHH
T ss_conf 99----7498567899--889999999973089999815321136776787789999998-6--2578777610421778
Q ss_pred HHHHHHHHHHH-CCCEEECHHHCCCC
Q ss_conf 88999999986-59868714431458
Q gi|254780137|r 720 ANIALEMAKSV-TNGLHIGTLLLGAA 744 (779)
Q Consensus 720 aNI~yKllq~l-gga~aiGPIL~G~~ 744 (779)
- -+.|+.+ ..+..+ +.||+.
T Consensus 461 ~---~~~l~~~~~~GD~~--~~~GAG 481 (491)
T TIGR01082 461 V---VEFLAEVLQSGDLI--LTMGAG 481 (491)
T ss_pred H---HHHHHHHCCCCCEE--EEECCC
T ss_conf 9---99999971699899--996055
No 385
>TIGR01137 cysta_beta cystathionine beta-synthase; InterPro: IPR005857 This model discriminates cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain from cysteine synthases. Cysteine synthase (O-acetylserine (thiol)-lyase) is the enzyme responsible for the formation of cysteine from O-acetyl-serine and hydrogen sulphide with the concomitant release of acetic acid - the function of many of these enzymes is unproven.; GO: 0004122 cystathionine beta-synthase activity, 0019343 cysteine biosynthetic process via cystathionine, 0005737 cytoplasm.
Probab=67.32 E-value=7.3 Score=18.08 Aligned_cols=133 Identities=16% Similarity=0.207 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHCC-CCEEEEECCCCCHHHHHHHHHHHCCCCCEEEHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHH
Q ss_conf 01008999986269-85265423889889999999870888460622206480157999999987189421687721899
Q gi|254780137|r 105 VMEGKAVLFKKFAG-INVFDIEINAKDVDTMVSTIVALEPTFGGINLEDIKAPECFEVERILSQKLKIPFLHDDQHGTAV 183 (779)
Q Consensus 105 vmeGK~~L~k~~ag-id~~~i~~~~~d~~e~i~~v~~~~p~fg~i~lEDi~~p~~f~i~~~l~~~~~ipvf~DD~qGTa~ 183 (779)
|.+-|--..|++|+ |=.-|-..+-.+||-.+..-+.|.--. |+++.|++.|++-.| |-=|= +|||-
T Consensus 99 mS~eKv~VL~AlGAEivrtPT~a~~d~PeSh~gVa~rL~~Ei----------Pga~KIlDQY~N~~N-P~aHY--~~Tg~ 165 (527)
T TIGR01137 99 MSEEKVDVLKALGAEIVRTPTAAAFDSPESHIGVAKRLVREI----------PGAHKILDQYANPSN-PLAHY--DGTGP 165 (527)
T ss_pred CCHHHHHHHHHHCCEEEECCCCCCCCCCCCCCHHHHHHCCCC----------CCCEECCCCCCCCCC-CCCCC--CCCHH
T ss_conf 461478999981980778788878884865204888522278----------884335200478878-61013--41058
Q ss_pred HHHHHHHHHHHHHC-CCHHHCEEEEECCCHHHH--HHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHH-HHHH
Q ss_conf 99999999999709-882241178742542567--89999998198857589995596030787332667889-7745
Q gi|254780137|r 184 TVTAATLNGMKLVG-KKFSDIKIVTLGAGAAAL--ACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKS-VYAQ 257 (779)
Q Consensus 184 v~lA~llnAl~~~g-k~l~~~~iv~~GaGaAg~--~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~-~~a~ 257 (779)
=.+.-. -| .-+..++.++.|+|+.|+ ||++-|+..-..+=+|+-+|=.|-|+.+ ++.||.-.+ .|-.
T Consensus 166 Ei~~q~------EGlnlfdk~~~~VAg~GTGGTItGi~ryLK~~~~~~~~ivGaDP~GSila~-pE~LN~t~~t~Y~V 236 (527)
T TIGR01137 166 EILEQC------EGLNLFDKLDMFVAGVGTGGTITGIARYLKDESNPKVRIVGADPEGSILAQ-PEELNKTGRTPYKV 236 (527)
T ss_pred HHHHHH------CCCCHHCCCCEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCEECC-CCCCCCCCCCCEEE
T ss_conf 999860------573012121178850578831554556543213893389987698533217-64655578983148
No 386
>pfam12434 Malate_DH Malate dehydrogenase enzyme. This domain family is found in bacteria, and is approximately 30 amino acids in length. The family is found in association with pfam00390, pfam03949, pfam01515. There is a conserved AAL sequence motif. There is a single completely conserved residue R that may be functionally important. Malate dehydrogenase is one of the enzymes involved in the citric acid cycle in mitochondria. It converts malate to oxaloacetate using NAD as a cofactor.
Probab=66.67 E-value=2.9 Score=20.85 Aligned_cols=18 Identities=44% Similarity=0.665 Sum_probs=14.6
Q ss_pred CCCHHHHHHHHHHHHCCC
Q ss_conf 553146999999984058
Q gi|254780137|r 14 FQEGDSLFKQALLYHQYP 31 (779)
Q Consensus 14 ~~~~~~~~~~al~~h~~~ 31 (779)
.+....+|+.||+||.++
T Consensus 11 ~qqraalRkAALeYHEFP 28 (28)
T pfam12434 11 EQQRAALRKAALEYHEFP 28 (28)
T ss_pred HHHHHHHHHHHHHHCCCC
T ss_conf 999999999988861388
No 387
>pfam05910 DUF868 Plant protein of unknown function (DUF868). This family consists of several hypothetical proteins from Arabidopsis thaliana and Oryza sativa. The function of this family is unknown.
Probab=66.57 E-value=1.6 Score=22.60 Aligned_cols=45 Identities=36% Similarity=0.299 Sum_probs=33.4
Q ss_pred CCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEECCCCCCCCCC
Q ss_conf 434885572143073057999999988998887513584799981785002542205105
Q gi|254780137|r 42 KMLNDQKDLSLAYSPGVAAPSMMIAEDPSKAAMYTNRSNLVAVVSNGSAVLGLGDIGPLA 101 (779)
Q Consensus 42 ~~~~~~~dl~~~ytpgva~~~~~i~~~~~~~~~~t~~~n~vaVvtdGt~vLGLGdiG~~a 101 (779)
..+.---||+-|.--+..||. .|=.||||.|++-||-|||+...|
T Consensus 74 ~~V~v~WDls~Akf~~~PEP~---------------sgfYVavv~d~EvvLllGDl~~ea 118 (272)
T pfam05910 74 GKVDVFWDLSSAKFGSGPEPV---------------SGFYVAVVADGEVVLLLGDLKKEA 118 (272)
T ss_pred CEEEEEEECCCCCCCCCCCCC---------------CCEEEEEEECCEEEEEECHHHHHH
T ss_conf 648889825303047899987---------------751899998878898743135687
No 388
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=66.48 E-value=8.8 Score=17.53 Aligned_cols=34 Identities=9% Similarity=0.212 Sum_probs=27.8
Q ss_pred HCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCC
Q ss_conf 4117874254256789999998198857589995596
Q gi|254780137|r 202 DIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEG 238 (779)
Q Consensus 202 ~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~G 238 (779)
+--+++.|+|.||...|..+.++|. ++.++|+..
T Consensus 4 ~YDviVIG~GpaG~~AA~~aa~~G~---kv~liE~~~ 37 (464)
T PRK05976 4 EYDLLIIGGGPGGYVAAIRAGQLGL---KTALVEKGK 37 (464)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCC---EEEEEECCC
T ss_conf 1889999978899999999997899---299997899
No 389
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=66.48 E-value=8.8 Score=17.53 Aligned_cols=31 Identities=16% Similarity=0.359 Sum_probs=26.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEEC
Q ss_conf 1178742542567899999981988575899955
Q gi|254780137|r 203 IKIVTLGAGAAALACLNLLVTMGVRRENIWVYDL 236 (779)
Q Consensus 203 ~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~ 236 (779)
--+++.|+|.||+.+|..+.+.|. ++.++|+
T Consensus 5 YDviVIG~GpAG~~AA~~aa~~G~---kValiE~ 35 (475)
T PRK06327 5 FDVVVIGAGPGGYVAAIRAAQLGL---KVACIEA 35 (475)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCC---EEEEEEE
T ss_conf 889999988899999999997899---1999972
No 390
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=66.48 E-value=8.8 Score=17.53 Aligned_cols=132 Identities=22% Similarity=0.317 Sum_probs=76.2
Q ss_pred HHHHHHHHHHCCCCCEEEHHHCCCCHHHHHHHHHHHHHCCCCCC---CCCCCHHHHHHHHHHHHHHHHCCCHHHCEEEEE
Q ss_conf 99999998708884606222064801579999999871894216---877218999999999999970988224117874
Q gi|254780137|r 132 DTMVSTIVALEPTFGGINLEDIKAPECFEVERILSQKLKIPFLH---DDQHGTAVTVTAATLNGMKLVGKKFSDIKIVTL 208 (779)
Q Consensus 132 ~e~i~~v~~~~p~fg~i~lEDi~~p~~f~i~~~l~~~~~ipvf~---DD~qGTa~v~lA~llnAl~~~gk~l~~~~iv~~ 208 (779)
|-+-++++.+.--+-+|-.-.++ ....+.+.+..++||+| |..|=|- +|+-++.-.+.-| +++..+|++.
T Consensus 89 Es~~Dt~~~Ls~~~D~iviR~~~----~~~~~~~a~~~~vPVIN~~~~~~HPtQ--~L~Dl~Ti~e~~g-~l~gl~i~~v 161 (331)
T PRK02102 89 ESMEDTARVLGRMYDGIEYRGFS----QEIVEELAKYSGVPVWNGLTDEWHPTQ--MLADFMTMKEHFG-PLKGLKLAYL 161 (331)
T ss_pred CCHHHHHHHHHHHCCEEEEECCC----HHHHHHHHHHCCCCEECCCCCCCCHHH--HHHHHHHHHHHHC-CCCCCEEEEE
T ss_conf 89899999999751678996277----289999997479864548887648799--9999999999838-7567738997
Q ss_pred CCCHHHHH--HHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCCCC-----CCHHHHCCCCCEEEE
Q ss_conf 25425678--999999819885758999559603078733266788977450889-----888886058837862
Q gi|254780137|r 209 GAGAAALA--CLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKSGP-----KPLSETMNNADVFLG 276 (779)
Q Consensus 209 GaGaAg~~--~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~~~-----~~l~ea~~~adv~iG 276 (779)
|-|--.++ ...++..+|+ ++.+|--+|+.-+. +.+...+ .++..... .++.++++++||+..
T Consensus 162 GD~~nnVa~S~~~~~~~lG~---~v~~~~P~~~~p~~--~~~~~~~-~~~~~~g~~i~~~~d~~ea~~~aDVvyt 230 (331)
T PRK02102 162 GDGRNNMANSLLVGGAKLGM---DVRICAPKSLWPEE--ELVAQAK-EIAKETGAKITITEDVEEAVKGADVIYT 230 (331)
T ss_pred CCCCCCHHHHHHHHHHHCCC---EEEEECCCCCCCCH--HHHHHHH-HHHHHHCCEEEEEECHHHHHCCCCEEEE
T ss_conf 88764246689999985598---59997586448897--9999999-9999829938999566666335765653
No 391
>PRK07062 short chain dehydrogenase; Provisional
Probab=66.47 E-value=8.8 Score=17.53 Aligned_cols=38 Identities=18% Similarity=0.312 Sum_probs=30.1
Q ss_pred CCCHHHCEEEEECCCHH-HHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf 98822411787425425-678999999819885758999559
Q gi|254780137|r 197 GKKFSDIKIVTLGAGAA-ALACLNLLVTMGVRRENIWVYDLE 237 (779)
Q Consensus 197 gk~l~~~~iv~~GaGaA-g~~~a~ll~~~g~~~~~i~~~D~~ 237 (779)
.-+|++..+++.|+++. |-++++.|...|. +++++|++
T Consensus 3 ~~~L~gK~alITG~s~GIG~a~a~~la~~Ga---~Vvi~~r~ 41 (265)
T PRK07062 3 QIQLEGRVAVVTGGSSGIGLATVELLLEAGA---SVAICGRD 41 (265)
T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEECC
T ss_conf 7788999899957577999999999998799---99999798
No 392
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=66.44 E-value=8.8 Score=17.52 Aligned_cols=91 Identities=15% Similarity=0.195 Sum_probs=54.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCC----------------EEECCCCCCCCHHHHHHHHCCCCCCHHH
Q ss_conf 117874254256789999998198857589995596----------------0307873326678897745088988888
Q gi|254780137|r 203 IKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEG----------------LVYEGREKKFDKWKSVYAQKSGPKPLSE 266 (779)
Q Consensus 203 ~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~G----------------li~~~r~~~~~~~~~~~a~~~~~~~l~e 266 (779)
.||.+.|-|-+|.-..+.+...+..--.++.+|.+- -+|+++.-.-+|..-+-|-......+.+
T Consensus 1 ~kIkViGVGG~G~N~vn~m~~~~~~~v~~iaiNTD~q~L~~~~~~~ki~iG~~~t~GlGaGg~Pe~G~~AA~e~~~~I~~ 80 (304)
T cd02201 1 AKIKVIGVGGGGGNAVNRMIESGLEGVEFIAANTDAQALAKSKAPNKIQLGKELTRGLGAGGDPEVGRKAAEESREEIKE 80 (304)
T ss_pred CCEEEEEECCCHHHHHHHHHHCCCCCCEEEEEECCHHHHHCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 94699987881299999999839998559999087999845999827970876568898888847999999988999999
Q ss_pred HCCCCCEEEECC--CCCCCC--HHHHHHCCC
Q ss_conf 605883786257--887789--889972189
Q gi|254780137|r 267 TMNNADVFLGLS--VAGALD--PAILKFMAE 293 (779)
Q Consensus 267 a~~~adv~iG~S--~~g~~t--~e~v~~M~~ 293 (779)
.++++|+++=+. ++|.=| -.+|..+++
T Consensus 81 ~l~~~d~vfi~AGmGGGTGTGaaPviA~~Ak 111 (304)
T cd02201 81 ALEGADMVFITAGMGGGTGTGAAPVIAKIAK 111 (304)
T ss_pred HHCCCCEEEEEECCCCCCCCCHHHHHHHHHH
T ss_conf 9736876999942579866317899999886
No 393
>TIGR03253 oxalate_frc formyl-CoA transferase. This enzyme, formyl-CoA transferase, transfers coenzyme A from formyl-CoA to oxalate. It forms a pathway, together with oxalyl-CoA decarboxylase, for oxalate degradation; decarboxylation by the latter gene regenerates formyl-CoA. The two enzymes typically are encoded by a two-gene operon.
Probab=66.29 E-value=8.8 Score=17.50 Aligned_cols=128 Identities=16% Similarity=0.244 Sum_probs=75.0
Q ss_pred CCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECC--CEEECCCCCCC-CHHHHHHH-HCCCCC-----------
Q ss_conf 8822411787425425678999999819885758999559--60307873326-67889774-508898-----------
Q gi|254780137|r 198 KKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLE--GLVYEGREKKF-DKWKSVYA-QKSGPK----------- 262 (779)
Q Consensus 198 k~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~--Gli~~~r~~~~-~~~~~~~a-~~~~~~----------- 262 (779)
|+|+-+||+=++..-||=-|..+|-.+|+ .++-+.+- |=.+.+..... +.....|. .+.+.+
T Consensus 2 ~PL~GirVldl~~~~agP~~~~~LAdlGA---eVIKVE~p~~GD~~R~~~~~~~~~~s~~f~~~nr~Krsi~lDlk~~~G 78 (415)
T TIGR03253 2 KPLDGIKVLDFTHVQSGPSCTQMLAWLGA---DVIKIERPGVGDITRGQLRDIPDVDSLYFTMLNCNKRSITLNTKTPEG 78 (415)
T ss_pred CCCCCCEEEECCCCCHHHHHHHHHHHHCC---EEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEECCCHHH
T ss_conf 89999989984884379999999998199---799989789987543457889897518889727998699987929899
Q ss_pred --CHHHHCCCCCEEEECCCCCC-----CCHHHHHHCCCCCEEEEECC-----CCCCC-CHHHHHHHCCCEEECCCCCCC
Q ss_conf --88886058837862578877-----89889972189977999178-----72009-988998518987980588788
Q gi|254780137|r 263 --PLSETMNNADVFLGLSVAGA-----LDPAILKFMAEKPLIMVLAN-----PNPEA-MPDEIKKVRPDAMICTGRSDF 328 (779)
Q Consensus 263 --~l~ea~~~adv~iG~S~~g~-----~t~e~v~~M~~~PiIfaLsN-----P~pEi-~p~~a~~~~g~aivatGrs~~ 328 (779)
.+.+.++.|||||--..||+ ++.|-++.-|++=|.-.+|- |...- -++...++.+...-.||..+-
T Consensus 79 ~~i~~~Lv~~aDV~ien~rpg~~~rlGl~ye~L~~~NP~lIy~sisgfG~~GP~~~~~~~D~~~qA~sG~~~~~G~~~~ 157 (415)
T TIGR03253 79 KEVLEELIKKADVMVENFGPGALDRMGFTWEYIQEINPRLILASIKGFGEGSPYENVKAYENVAQAAGGAASTTGFWDG 157 (415)
T ss_pred HHHHHHHHHHCCEEEECCCCCHHHHCCCCCCCHHHHCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCHHHCCCCCC
T ss_conf 9999999986898676688568988178630046639862888234489999752344465888872175200489999
No 394
>PRK12587 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=66.16 E-value=8.1 Score=17.77 Aligned_cols=33 Identities=15% Similarity=0.114 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
Q ss_conf 798888999874213223543225899999998
Q gi|254780137|r 404 SYIAPAVAKAAEEAGVASSPIEDYEVYRDSLKR 436 (779)
Q Consensus 404 ~~va~AVa~aA~~sGvAr~pi~d~~~Y~~~L~~ 436 (779)
|.-+-+++|||+.+|+.+.+-...|.|+|+|+.
T Consensus 83 PvaaH~iaRAAy~~gv~~~~~t~~DeL~e~lk~ 115 (118)
T PRK12587 83 PLSSHMIMKAAYNIKTPYTKKTKVDEISEDLKD 115 (118)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHC
T ss_conf 999999999999809999777531678998852
No 395
>PRK06370 mercuric reductase; Validated
Probab=66.14 E-value=8.9 Score=17.49 Aligned_cols=34 Identities=18% Similarity=0.258 Sum_probs=28.5
Q ss_pred HHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf 2411787425425678999999819885758999559
Q gi|254780137|r 201 SDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLE 237 (779)
Q Consensus 201 ~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~ 237 (779)
++--+|+.|+|.||...|..+.+.|. ++.++++.
T Consensus 3 ~~YDviVIG~GpAG~~AA~~aa~~G~---~V~liEk~ 36 (459)
T PRK06370 3 QRYDAVVIGAGQAGPPLAARAAGLGM---KVALIERG 36 (459)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCC---EEEEEECC
T ss_conf 71758999988899999999996899---19999689
No 396
>PRK06445 acetyl-CoA acetyltransferase; Provisional
Probab=66.08 E-value=8.9 Score=17.48 Aligned_cols=50 Identities=16% Similarity=0.220 Sum_probs=38.6
Q ss_pred CEEEEEC---CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCC
Q ss_conf 3499974---7368898988999999999999998189972999970255788
Q gi|254780137|r 608 NFLFFTD---THVSAEPSAMEIADSTILASQAICSLGMRPKVSVLFHSNSGSH 657 (779)
Q Consensus 608 ~~lFiaD---taVNi~PtaEqLAdIa~~aa~~ar~lGiePkVAlLS~SnfGs~ 657 (779)
+++|--| |+-|-.|-.+==+-+.+.+.+.++++|++|..-++++..-|..
T Consensus 234 ~p~f~~~g~vTagnss~isDGAAavvl~s~~~ak~~gl~p~ari~~~~~~g~~ 286 (394)
T PRK06445 234 PPAFKPDGVITAGNSSPLNSGASYVMLMSKKAVKEYGLKPMAKIRSFGFAGVP 286 (394)
T ss_pred CCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECC
T ss_conf 97221477333467787766479888624999998799815999965466538
No 397
>pfam05834 Lycopene_cycl Lycopene cyclase protein. This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare.
Probab=66.06 E-value=8.9 Score=17.48 Aligned_cols=33 Identities=24% Similarity=0.196 Sum_probs=25.8
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCC
Q ss_conf 7874254256789999998198857589995596
Q gi|254780137|r 205 IVTLGAGAAALACLNLLVTMGVRRENIWVYDLEG 238 (779)
Q Consensus 205 iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~G 238 (779)
++|.|+|.||...|..|...... .++.++|..-
T Consensus 2 viIiG~G~AGLsLA~~L~~~~~~-~~Vllid~~~ 34 (374)
T pfam05834 2 LVIVGAGLAGLLLALRLRQARPG-LRVLLIDAGP 34 (374)
T ss_pred EEEECCCHHHHHHHHHHHHCCCC-CEEEEEECCC
T ss_conf 89999529999999999740899-8199997898
No 398
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=65.97 E-value=9 Score=17.46 Aligned_cols=131 Identities=15% Similarity=0.234 Sum_probs=70.4
Q ss_pred HHHHHHHHHHCCCCCEEEHHHCCCCHHHHHHHHHHHHHCCCCCC---CC-CCCHHHHHHHHHHHHHH---HHCCCHHHCE
Q ss_conf 99999998708884606222064801579999999871894216---87-72189999999999999---7098822411
Q gi|254780137|r 132 DTMVSTIVALEPTFGGINLEDIKAPECFEVERILSQKLKIPFLH---DD-QHGTAVTVTAATLNGMK---LVGKKFSDIK 204 (779)
Q Consensus 132 ~e~i~~v~~~~p~fg~i~lEDi~~p~~f~i~~~l~~~~~ipvf~---DD-~qGTa~v~lA~llnAl~---~~gk~l~~~~ 204 (779)
|-+-++++.+.--.-+|-.-.++. ...+++.+..++||.| |+ .|=|=+ |+-++.-.+ -.|++++..|
T Consensus 88 Esi~DTarvls~y~D~iviR~~~~----~~~~e~a~~s~vPVINa~~~~~~HPtQa--LaDl~Ti~e~~~~~~~~l~glk 161 (338)
T PRK08192 88 ESLYDTARVLSTYSDVIAMRHPDA----YSVKEFAEGSRVPVINGGDGSNEHPTQA--LLDLFTIQKELAHAGRGIDGMH 161 (338)
T ss_pred CCHHHHHHHHHCCCCEEEEECCCH----HHHHHHHHCCCCCEEECCCCCCCCCHHH--HHHHHHHHHHHHHCCCCCCCCE
T ss_conf 789999999861598999988510----0489987418987896788987682789--8889999999874089855748
Q ss_pred EEEECC---CHHHHHHHHHHHHC-CCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCCC-----CCCHHHHCCCCCEEE
Q ss_conf 787425---42567899999981-988575899955960307873326678897745088-----988888605883786
Q gi|254780137|r 205 IVTLGA---GAAALACLNLLVTM-GVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKSG-----PKPLSETMNNADVFL 275 (779)
Q Consensus 205 iv~~Ga---GaAg~~~a~ll~~~-g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~~-----~~~l~ea~~~adv~i 275 (779)
|++.|- |-..-....++... |+ ++.++--+|+- +++.....++... ..++.++++++||+.
T Consensus 162 ia~vGD~~~~r~~~s~~~ll~~~~g~---~~~l~~P~~~~-------~p~~~~~~~~~~g~~i~~~~d~~~a~~~aDvvy 231 (338)
T PRK08192 162 IAMVGDLKFGRTVHSLSRLLCMYKNI---SFTLISPKELA-------MPDYVISDIENAGHKITITDQLEGNLDKADILY 231 (338)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCC---EEEEECCCCCC-------CCHHHHHHHHHCCCEEEEEECHHHHHCCCEEEE
T ss_conf 99976777563899999999965598---89998998778-------999999999984994999728889723684999
Q ss_pred ECC
Q ss_conf 257
Q gi|254780137|r 276 GLS 278 (779)
Q Consensus 276 G~S 278 (779)
-+.
T Consensus 232 ~~~ 234 (338)
T PRK08192 232 LTR 234 (338)
T ss_pred ECC
T ss_conf 575
No 399
>PRK06116 glutathione reductase; Validated
Probab=65.67 E-value=9.1 Score=17.42 Aligned_cols=33 Identities=18% Similarity=0.441 Sum_probs=27.6
Q ss_pred HCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf 411787425425678999999819885758999559
Q gi|254780137|r 202 DIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLE 237 (779)
Q Consensus 202 ~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~ 237 (779)
+--+++.|+|.||..+|......|. ++.+++++
T Consensus 4 ~YDvvVIG~GpaG~~aA~~aa~~G~---kV~liE~~ 36 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMYGA---KVALIEAK 36 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCC---EEEEEECC
T ss_conf 4888999988899999999996879---69999379
No 400
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase; InterPro: IPR005986 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see . Aspartate-semialdehyde dehydrogenase, the second enzyme in the aspartate pathway, converts aspartyl phosphate to aspartate-semialdehyde, the branch point intermediate between the lysine and threonine/methionine pathways. Based on sequence alignments, the aspartate-semialdehyde dehydrogenase family appears to have two distinct subgroups, one found in most bacteria (Gram-positve and Gram-negative), while the other is found primarily in organisms lacking peptidoglycan (archaea,fungi and some bacteria). Most studies have been performed on enzymes isolated from Gram-negative bacteria , , , . The N-terminal domain forms the active site and NADP-binding pocket, while C-terminal domain is primarily involved in hydrophobic intersubunit contacts. The catalytic mechanism involves the formation of a covalent thioester acyl-enzyme intermediate mediated through nucleophilic attack by an active site cysteine residue on the substrate aspartyl phosphate. Release of inorganic phosphate is followed by hydride transfer from NADPH to yield the product. The recently described archaeal structure suggests that the two subgroups of aspartate semi-aldehyde dehydrogenase share similar structures and have an identical catalytic mechanism, despite their relatively low sequence identity . Unlike the bacterial enzymes, the archaeal enzyme utilised both NAD and NADP as cofactor. This entry represents the subgroup of aspartate-semialdehyde dehydrogenase most commonly found in bacteria. Note that some bacteria, such as Chlamydia, contain the enzyme from the other subgroup (IPR005676 from INTERPRO) instead.; GO: 0004073 aspartate-semialdehyde dehydrogenase activity, 0009086 methionine biosynthetic process, 0009088 threonine biosynthetic process.
Probab=65.63 E-value=9 Score=17.45 Aligned_cols=48 Identities=21% Similarity=0.369 Sum_probs=25.4
Q ss_pred EEEECCC------CC-CCCHHHHHHCCCC-CEEEEECCCCC--CCCHHHHHHHCCCEEE
Q ss_conf 7862578------87-7898899721899-77999178720--0998899851898798
Q gi|254780137|r 273 VFLGLSV------AG-ALDPAILKFMAEK-PLIMVLANPNP--EAMPDEIKKVRPDAMI 321 (779)
Q Consensus 273 v~iG~S~------~g-~~t~e~v~~M~~~-PiIfaLsNP~p--Ei~p~~a~~~~g~aiv 321 (779)
||.|=|- .. -++.|-+++.=++ |=|.-.+||.. =+||=.|. ......|
T Consensus 251 Vf~GHS~S~~iEf~~d~~~~e~~~E~Lk~ApGV~~~D~P~~~~Yp~P~~A~-G~D~VfV 308 (350)
T TIGR01296 251 VFTGHSESVNIEFEKDEISPEDVREVLKNAPGVVVIDDPSQNLYPTPLEAV-GEDEVFV 308 (350)
T ss_pred CHHCCHHHHHHHHCCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCHHEE-CCCCEEE
T ss_conf 111112321001116887888999973479867998768887788831010-2571567
No 401
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=65.60 E-value=9.1 Score=17.42 Aligned_cols=36 Identities=14% Similarity=0.220 Sum_probs=29.2
Q ss_pred CHHHCEEEEECCCHH-HHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf 822411787425425-678999999819885758999559
Q gi|254780137|r 199 KFSDIKIVTLGAGAA-ALACLNLLVTMGVRRENIWVYDLE 237 (779)
Q Consensus 199 ~l~~~~iv~~GaGaA-g~~~a~ll~~~g~~~~~i~~~D~~ 237 (779)
+|+..++++.|+++. |.++++.|.+.|. +++++|++
T Consensus 3 ~L~gK~alVTGas~GIG~aia~~l~~~Ga---~V~~~~r~ 39 (263)
T PRK06200 3 WLTGQVALITGGGSGIGRALVERFLAEGA---RVAVLERS 39 (263)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEECC
T ss_conf 71728899958667999999999998799---99999799
No 402
>TIGR02024 FtcD glutamate formiminotransferase; InterPro: IPR004227 This entry represents the formiminotransferase (FT) domain of formiminotransferase-cyclodeaminase (FTCD), which forms a homodimer, with each protomer being comprised of two subdomains. Tetrahydrofolate (THF)-dependent glutamate formiminotransferase is involved in the histidine utilization pathway. This enzyme interconverts L-glutamate and N-formimino-L-glutamate. The enzyme is bifunctional as it also catalyzes the cyclodeaminase reaction on N-formimino-THF, converting it to 5,10-methenyl-THF and releasing ammonia; part of the process of regenerating THF. This model covers enzymes from metazoa as well as Gram-positive bacteria and archaea. In humans, deficiency of this enzyme results in a disease phenotype . The crystal structure of the enzyme has been studied in the context of the catalytic mechanism . ; GO: 0005542 folic acid binding, 0016740 transferase activity, 0008152 metabolic process.
Probab=65.56 E-value=9.1 Score=17.41 Aligned_cols=105 Identities=24% Similarity=0.434 Sum_probs=56.6
Q ss_pred CCCCEEEEECCC----------CCHHHHHHHHHHHC----------------CCCCE------EEHHHCCCCHHHHHHH-
Q ss_conf 698526542388----------98899999998708----------------88460------6222064801579999-
Q gi|254780137|r 117 AGINVFDIEINA----------KDVDTMVSTIVALE----------------PTFGG------INLEDIKAPECFEVER- 163 (779)
Q Consensus 117 agid~~~i~~~~----------~d~~e~i~~v~~~~----------------p~fg~------i~lEDi~~p~~f~i~~- 163 (779)
-+|..+|+.-|. -||+..++++..+. |.||+ |=+.|++-.+|-++-+
T Consensus 31 ~~v~~LD~~~d~dHNRsV~T~vG~Pe~v~~A~~~~aK~A~eLIDm~~H~G~HPRMGA~DViPF~Pv~~~~~EECV~~A~~ 110 (331)
T TIGR02024 31 DNVKILDVDSDPDHNRSVITFVGEPEKVVNAALKLAKKAAELIDMRNHKGEHPRMGAVDVIPFIPVKDVTMEECVELAKE 110 (331)
T ss_pred CCEEEEEEECCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHH
T ss_conf 96589986477799866899865858999999998878676530014787779524410005313789848999999998
Q ss_pred ---HHHHHHCCCCC-C-CCCCCHHHHHHHHHHHH---HHHHCCCHHHCE--------EEEECCCHHHHHHHHHH
Q ss_conf ---99987189421-6-87721899999999999---997098822411--------78742542567899999
Q gi|254780137|r 164 ---ILSQKLKIPFL-H-DDQHGTAVTVTAATLNG---MKLVGKKFSDIK--------IVTLGAGAAALACLNLL 221 (779)
Q Consensus 164 ---~l~~~~~ipvf-~-DD~qGTa~v~lA~llnA---l~~~gk~l~~~~--------iv~~GaGaAg~~~a~ll 221 (779)
|+=|+|+|||+ . |=++=--==+||.+-+. -.--.++|+|.+ -+.--+|+..+|--+.|
T Consensus 111 ~Gkr~GEELGvPVYLYe~AA~~p~R~~La~IRkGnfqYE~l~eKiK~~~WkPDfGP~~~~Pk~G~Ta~GAR~fL 184 (331)
T TIGR02024 111 LGKRLGEELGVPVYLYEEAATRPERQTLAAIRKGNFQYEALFEKIKDPKWKPDFGPSEVNPKAGATAVGARKFL 184 (331)
T ss_pred HHHHHHHHCCCCEEECHHHCCCCCCCCCHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCC
T ss_conf 61585664588532225454885114617782776510233886167557788988713653563476025340
No 403
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase; InterPro: IPR004379 UDP-galactopyranose mutase (5.4.99.9 from EC) is involved in the conversion of UDP-GALP into UDP-GALF through a 2-keto intermediate, and contains FAD as a cofactor. The gene is known as glf, ceoA, and rfbD. It is known experimentally in Escherichia coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.; GO: 0008767 UDP-galactopyranose mutase activity, 0009103 lipopolysaccharide biosynthetic process.
Probab=65.41 E-value=9.2 Score=17.39 Aligned_cols=24 Identities=29% Similarity=0.603 Sum_probs=20.9
Q ss_pred EEEEECCCHHHHHHHH-HHHHCCCC
Q ss_conf 1787425425678999-99981988
Q gi|254780137|r 204 KIVTLGAGAAALACLN-LLVTMGVR 227 (779)
Q Consensus 204 ~iv~~GaGaAg~~~a~-ll~~~g~~ 227 (779)
+++|.|||=+|+=||+ .+..+|-+
T Consensus 3 dyiivGaGl~G~V~A~r~l~~lgk~ 27 (390)
T TIGR00031 3 DYIIVGAGLSGIVLANRILAQLGKR 27 (390)
T ss_pred CEEEECCCHHHHHHHHHHHHHCCCE
T ss_conf 1799866367799999999970998
No 404
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=65.01 E-value=9.3 Score=17.34 Aligned_cols=39 Identities=15% Similarity=0.194 Sum_probs=31.2
Q ss_pred HCCCHHHCEEEEECCCHH-HHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf 098822411787425425-678999999819885758999559
Q gi|254780137|r 196 VGKKFSDIKIVTLGAGAA-ALACLNLLVTMGVRRENIWVYDLE 237 (779)
Q Consensus 196 ~gk~l~~~~iv~~GaGaA-g~~~a~ll~~~g~~~~~i~~~D~~ 237 (779)
...+|++..++|.|++.. |.++++.|.+.|. +++++|+.
T Consensus 2 M~~~l~gKvalITGas~GIG~aiA~~la~~Ga---~V~~~~r~ 41 (260)
T PRK12823 2 MNQRFAGKVAVVTGAAQGIGRGVALRAAAEGA---RVVLVDRS 41 (260)
T ss_pred CCCCCCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEECC
T ss_conf 88887999899948867899999999998799---99999694
No 405
>PRK11728 hypothetical protein; Provisional
Probab=64.97 E-value=9.3 Score=17.34 Aligned_cols=36 Identities=19% Similarity=0.142 Sum_probs=27.4
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEE
Q ss_conf 1787425425678999999819885758999559603
Q gi|254780137|r 204 KIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLV 240 (779)
Q Consensus 204 ~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli 240 (779)
-+||.|||-.|+++|..|....-. .++.++|+..-+
T Consensus 4 DvvIIGgGIvG~siA~~Ls~~~~~-~~V~vlEke~~~ 39 (400)
T PRK11728 4 DFVIIGGGIVGLSTAMQLQDRYPG-ARIALLEKESGP 39 (400)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCC-CEEEEEECCCCC
T ss_conf 099999679999999999955999-839999689997
No 406
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=64.84 E-value=9.4 Score=17.32 Aligned_cols=36 Identities=25% Similarity=0.339 Sum_probs=28.5
Q ss_pred CHHHCEEEEECCCHH-HHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf 822411787425425-678999999819885758999559
Q gi|254780137|r 199 KFSDIKIVTLGAGAA-ALACLNLLVTMGVRRENIWVYDLE 237 (779)
Q Consensus 199 ~l~~~~iv~~GaGaA-g~~~a~ll~~~g~~~~~i~~~D~~ 237 (779)
+|++..+++.||++. |-++++.|.+.|. +++++|++
T Consensus 2 ~L~gK~~lITGas~GIG~aiA~~la~~Ga---~V~i~~r~ 38 (253)
T PRK08217 2 DLKDKVIVITGGAQGLGRAMAEYLAQKGA---KLALIDLN 38 (253)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEECC
T ss_conf 78998899948877899999999998799---89999799
No 407
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=64.72 E-value=9.4 Score=17.31 Aligned_cols=35 Identities=14% Similarity=0.316 Sum_probs=31.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEE
Q ss_conf 11787425425678999999819885758999559603
Q gi|254780137|r 203 IKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLV 240 (779)
Q Consensus 203 ~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli 240 (779)
.|||+.|+|-||+.-|-.....|. +++++++...+
T Consensus 410 ~rVIVVGsGlAGLSAAIeA~e~Ga---kVVLLEKmp~l 444 (1167)
T PTZ00306 410 ARVIVVGGGLAGCSAAIEAASCGA---QVILLEKEAKL 444 (1167)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCC---CEEEEECCCCC
T ss_conf 868998975799999999997799---57999578988
No 408
>pfam04820 Trp_halogenase Tryptophan halogenase. Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent.
Probab=64.67 E-value=9.5 Score=17.30 Aligned_cols=56 Identities=27% Similarity=0.393 Sum_probs=30.7
Q ss_pred EEEEE-CCCCEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCEEEHHHCCCC
Q ss_conf 79998-17850025422051058300100899998626985265423889889999999870888460622206480
Q gi|254780137|r 81 LVAVV-SNGSAVLGLGDIGPLASKPVMEGKAVLFKKFAGINVFDIEINAKDVDTMVSTIVALEPTFGGINLEDIKAP 156 (779)
Q Consensus 81 ~vaVv-tdGt~vLGLGdiG~~a~~pvmeGK~~L~k~~agid~~~i~~~~~d~~e~i~~v~~~~p~fg~i~lEDi~~p 156 (779)
-|.+| |.--.++|.|. +..|-|- .+++.+ || |..+||..+.+..-. ||.|+|+..+
T Consensus 27 ~ItlIES~~i~~iGVGE----~T~p~~~---~~l~~l-GI----------~e~~fm~~~~AT~K~--Gi~F~nW~~~ 83 (457)
T pfam04820 27 DVTLVESEEIGTVGVGE----ATIPSIR---TFNRML-GI----------DEAEFMRATQATFKL--GIRFEDWGRR 83 (457)
T ss_pred EEEEEECCCCCCCCCCC----CCHHHHH---HHHHHC-CC----------CHHHHHHHCCCEEEC--CEEECCCCCC
T ss_conf 79999679999878457----6379999---999983-99----------989999973988778--3783186889
No 409
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=64.66 E-value=9.5 Score=17.30 Aligned_cols=33 Identities=15% Similarity=0.357 Sum_probs=28.3
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCE
Q ss_conf 178742542567899999981988575899955960
Q gi|254780137|r 204 KIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGL 239 (779)
Q Consensus 204 ~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gl 239 (779)
-|+|.|||-.|...|-.|...|. ++.++|++-.
T Consensus 3 DV~IvGaG~vGl~lAl~La~~g~---~v~lie~~~~ 35 (374)
T PRK06617 3 NTVILGCGLSGMLTALSFAQKGI---KTTIFESKSV 35 (374)
T ss_pred EEEEECCCHHHHHHHHHHHHCCC---EEEEEECCCC
T ss_conf 29999966999999999985799---6999978997
No 410
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=64.34 E-value=9.6 Score=17.26 Aligned_cols=36 Identities=17% Similarity=0.202 Sum_probs=30.1
Q ss_pred HHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCE
Q ss_conf 241178742542567899999981988575899955960
Q gi|254780137|r 201 SDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGL 239 (779)
Q Consensus 201 ~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gl 239 (779)
.+--+|+.|+|.||..+|..+.++|. ++.++++.+.
T Consensus 2 ~~yDviVIG~GpaG~~aA~~aa~~G~---~ValIEk~~~ 37 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAKAGW---RVALIEQSNA 37 (441)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCC---EEEEEECCCC
T ss_conf 97898999978899999999997899---2999975899
No 411
>PRK06500 short chain dehydrogenase; Provisional
Probab=64.24 E-value=9.6 Score=17.25 Aligned_cols=37 Identities=8% Similarity=0.185 Sum_probs=28.0
Q ss_pred CCHHHCEEEEECCCHH-HHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf 8822411787425425-678999999819885758999559
Q gi|254780137|r 198 KKFSDIKIVTLGAGAA-ALACLNLLVTMGVRRENIWVYDLE 237 (779)
Q Consensus 198 k~l~~~~iv~~GaGaA-g~~~a~ll~~~g~~~~~i~~~D~~ 237 (779)
.+|++.++++.|+++. |-++++.|.+.|. +++++|++
T Consensus 2 ~rl~gK~~lITGas~GIG~aiA~~la~~Ga---~V~i~~r~ 39 (249)
T PRK06500 2 SRLQGKTALITGGTSGIGLETARQFAAEGA---RVAITGRD 39 (249)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEECC
T ss_conf 898998899937687899999999998799---99999699
No 412
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit; InterPro: IPR011281 Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favoured under different circumstances. This entry represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in Escherichia coli and other proteobacteria, and in a few other lineages. However, excluded are all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.; GO: 0016627 oxidoreductase activity acting on the CH-CH group of donors, 0050660 FAD binding, 0006099 tricarboxylic acid cycle.
Probab=64.13 E-value=9.7 Score=17.23 Aligned_cols=32 Identities=22% Similarity=0.301 Sum_probs=17.8
Q ss_pred CEEEECCCCCCCCHHHHHHC----CCCCEEEEECCCCCC
Q ss_conf 37862578877898899721----899779991787200
Q gi|254780137|r 272 DVFLGLSVAGALDPAILKFM----AEKPLIMVLANPNPE 306 (779)
Q Consensus 272 dv~iG~S~~g~~t~e~v~~M----~~~PiIfaLsNP~pE 306 (779)
.|||-+. =+.+|++.+= ++=..+|+=-.|+.|
T Consensus 310 hV~l~l~---HLg~E~l~~kLPgI~E~a~~faGvDpvkd 345 (615)
T TIGR01816 310 HVYLKLD---HLGEEVLEEKLPGITELARTFAGVDPVKD 345 (615)
T ss_pred EEEEEEC---CCCHHHHHHHCCCHHHHHHHHCCCCCCCC
T ss_conf 8988613---48857886528775489998638885107
No 413
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=64.13 E-value=9.7 Score=17.23 Aligned_cols=36 Identities=22% Similarity=0.250 Sum_probs=16.4
Q ss_pred CCHHHCEEEEECCCHH-HHHHHHHHHHCCCCCCCEEEEEC
Q ss_conf 8822411787425425-67899999981988575899955
Q gi|254780137|r 198 KKFSDIKIVTLGAGAA-ALACLNLLVTMGVRRENIWVYDL 236 (779)
Q Consensus 198 k~l~~~~iv~~GaGaA-g~~~a~ll~~~g~~~~~i~~~D~ 236 (779)
|.|+...+++-||++. |-++++.|.+.|. ++.++|+
T Consensus 2 ksL~gKvalITGas~GIG~aiA~~la~~Ga---~V~l~~r 38 (238)
T PRK07666 2 ESLQGKNALITGAGRGIGRAVAIALAKEGV---NVGLLAR 38 (238)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEEC
T ss_conf 899999899916377899999999998799---8999989
No 414
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=63.85 E-value=9.8 Score=17.20 Aligned_cols=185 Identities=15% Similarity=0.139 Sum_probs=97.9
Q ss_pred HHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHCEEEEECCC----HHHHHHHHHHHHCC
Q ss_conf 22064801579999999871894216877218999999999999970988224117874254----25678999999819
Q gi|254780137|r 150 LEDIKAPECFEVERILSQKLKIPFLHDDQHGTAVTVTAATLNGMKLVGKKFSDIKIVTLGAG----AAALACLNLLVTMG 225 (779)
Q Consensus 150 lEDi~~p~~f~i~~~l~~~~~ipvf~DD~qGTa~v~lA~llnAl~~~gk~l~~~~iv~~GaG----aAg~~~a~ll~~~g 225 (779)
-|+++-.+++.++.+-|.+ .+|+-+++.+=.+.++.--++..-....-...+..-+..||. .-...-++.|+.+|
T Consensus 172 ~~~isl~eA~~ll~~~kie-klpvVd~~g~L~glit~kDi~k~~~~P~a~~D~~grL~VgAAVg~~~~~~eRa~~Lv~aG 250 (499)
T PTZ00314 172 RYPITLEDANDVLNRSRKG-VLPIVNDNGELVALVSRSDAVKNRDYPHASKDENKQLLVGAAISTREEDKERAAALIDAG 250 (499)
T ss_pred CCCCCHHHHHHHHHHHHHC-CCEEECCCCCEEEEEECCHHHHHHHCCCHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCC
T ss_conf 5999999999999860331-230665789589986303487753387122201387899999478804899999999869
Q ss_pred CCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCC-C-------CCCH---HHHCC-CCC-EEEECCCCCCCCHHHHHHCC
Q ss_conf 8857589995596030787332667889774508-8-------9888---88605-883-78625788778988997218
Q gi|254780137|r 226 VRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKS-G-------PKPL---SETMN-NAD-VFLGLSVAGALDPAILKFMA 292 (779)
Q Consensus 226 ~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~-~-------~~~l---~ea~~-~ad-v~iG~S~~g~~t~e~v~~M~ 292 (779)
+ +++++|+-. +.....-+..++..+.. + ..|- .+.++ ||| |.+|...+-+.|--
T Consensus 251 v---DvlvIDtAh----Ghs~~v~~~ik~ik~~~p~v~vIaGNVaT~~~a~~Li~aGAD~vkVGiGpGSiCTTR------ 317 (499)
T PTZ00314 251 V---DVLVLDSSQ----GNSIYQIDFIKWIKSTYPHLEVIAGNVVTQDQAKNLIDAGADGIRIGMGSGSICTTQ------ 317 (499)
T ss_pred C---CEEEEECCC----CCCHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHCCCCEEEECCCCCCCCCCC------
T ss_conf 9---899981688----772789999999885279884676433109999999974998799753588551046------
Q ss_pred CCCEEEEECCCCCCCCHH--HHHHHCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 997799917872009988--998518987980588788774350345566545675137300267899999
Q gi|254780137|r 293 EKPLIMVLANPNPEAMPD--EIKKVRPDAMICTGRSDFSNQVNNVLCFPYIFRGALDCGATAITEEMKVAA 361 (779)
Q Consensus 293 ~~PiIfaLsNP~pEi~p~--~a~~~~g~aivatGrs~~pnQ~NN~l~FPgif~Gal~~~A~~Itd~M~~aA 361 (779)
+|-.-.-|.--.-.+ ++....+..|+|.|---|+ |=--=||.++|..+=-+=++|.
T Consensus 318 ---~v~GvGvPq~tAv~~~a~~a~~~gvpiIADGGIr~s----------GDi~KAlAaGAd~VMlGsllAG 375 (499)
T PTZ00314 318 ---EVCAVGRPQATAVYKVARYAHSRGVPCIADGGIRSS----------GDIVKALALGASCVMLGSMLAG 375 (499)
T ss_pred ---CCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCH----------HHHHHHHHCCCCEEEECCCCCC
T ss_conf ---434667860567999999864499859914784643----------1899998728987860841047
No 415
>KOG2304 consensus
Probab=63.63 E-value=8.7 Score=17.55 Aligned_cols=153 Identities=18% Similarity=0.327 Sum_probs=75.8
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEE-ECCCCCCCCHH---------------HHHHHHCC-----CCC
Q ss_conf 1787425425678999999819885758999559603-07873326678---------------89774508-----898
Q gi|254780137|r 204 KIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLV-YEGREKKFDKW---------------KSVYAQKS-----GPK 262 (779)
Q Consensus 204 ~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli-~~~r~~~~~~~---------------~~~~a~~~-----~~~ 262 (779)
.+-++|||--|-|||..-...|. ++|++|+.--. .+.+. ..... +..|+..+ -..
T Consensus 13 ~V~ivGaG~MGSGIAQv~a~sg~---~V~l~d~~~~aL~~A~~-~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~t 88 (298)
T KOG2304 13 NVAIVGAGQMGSGIAQVAATSGL---NVWLVDANEDALSRATK-AISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTST 88 (298)
T ss_pred CEEEECCCCCCHHHHHHHHHCCC---CEEEECCCHHHHHHHHH-HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 24787566432039999885199---46985477789999999-999999999862136771567889999999998717
Q ss_pred CHHHHCCCCCEEE--------------------------ECCCCCCCCHHHHHHCCCCCEEEE---ECCCCC-----CC-
Q ss_conf 8888605883786--------------------------257887789889972189977999---178720-----09-
Q gi|254780137|r 263 PLSETMNNADVFL--------------------------GLSVAGALDPAILKFMAEKPLIMV---LANPNP-----EA- 307 (779)
Q Consensus 263 ~l~ea~~~adv~i--------------------------G~S~~g~~t~e~v~~M~~~PiIfa---LsNP~p-----Ei- 307 (779)
.+.+++..||+.| -.|-...+.-+-+..--+||--|+ .=||.| |+
T Consensus 89 nv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl~lt~ia~~~~~~srf~GlHFfNPvPvMKLvEVi 168 (298)
T KOG2304 89 NVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSLSLTDIASATQRPSRFAGLHFFNPVPVMKLVEVI 168 (298)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEHHHHHHHCCCHHHHCEEECCCCCHHHHHHHHH
T ss_conf 77776423679999998747789999999984466562886256524599877632583450111135871067786664
Q ss_pred -----CHHH---H---HHHCCCEEECCCCCCCCCCCCHHHHHHHHHHHHH-----HCCCCCCCHHHHHHHH
Q ss_conf -----9889---9---8518987980588788774350345566545675-----1373002678999999
Q gi|254780137|r 308 -----MPDE---I---KKVRPDAMICTGRSDFSNQVNNVLCFPYIFRGAL-----DCGATAITEEMKVAAA 362 (779)
Q Consensus 308 -----~p~~---a---~~~~g~aivatGrs~~pnQ~NN~l~FPgif~Gal-----~~~A~~Itd~M~~aAa 362 (779)
.+|- . -++-|+--||. -|+|+-+-|-|.-||+|-..- |+--..|...|++-|-
T Consensus 169 r~~~TS~eTf~~l~~f~k~~gKttVac--kDtpGFIVNRlLiPyl~ea~r~yerGdAskeDIDtaMklGag 237 (298)
T KOG2304 169 RTDDTSDETFNALVDFGKAVGKTTVAC--KDTPGFIVNRLLIPYLMEAIRMYERGDASKEDIDTAMKLGAG 237 (298)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEE--CCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCC
T ss_conf 478888899999999999857770320--588741145778999999999998167707668899852589
No 416
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=63.51 E-value=9.9 Score=17.16 Aligned_cols=33 Identities=21% Similarity=0.331 Sum_probs=28.0
Q ss_pred HCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf 411787425425678999999819885758999559
Q gi|254780137|r 202 DIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLE 237 (779)
Q Consensus 202 ~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~ 237 (779)
+--+++.|+|.||..+|..+.++|. ++.+++++
T Consensus 4 ~YDviVIG~GpaG~~aA~~aa~~G~---kv~iiE~~ 36 (467)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGL---KTAVVEPK 36 (467)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCC---EEEEEECC
T ss_conf 6878999978899999999997899---09999489
No 417
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=63.44 E-value=9.9 Score=17.15 Aligned_cols=33 Identities=12% Similarity=0.406 Sum_probs=16.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCE
Q ss_conf 1178742542567899999981988575899955960
Q gi|254780137|r 203 IKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGL 239 (779)
Q Consensus 203 ~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gl 239 (779)
.-|||.|+| ||+..|-.....|. ++.++++...
T Consensus 17 ~DVvVVGsG-AGl~AAi~Aae~G~---~VivlEK~~~ 49 (566)
T PRK12845 17 VDLLVVGSG-TGMAAALAAHELGL---SVLIVEKSSY 49 (566)
T ss_pred ECEEEECHH-HHHHHHHHHHHCCC---CEEEEECCCC
T ss_conf 497998846-99999999998899---3899968999
No 418
>pfam00478 IMPDH IMP dehydrogenase / GMP reductase domain. This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family.
Probab=62.79 E-value=5.6 Score=18.90 Aligned_cols=82 Identities=20% Similarity=0.240 Sum_probs=49.1
Q ss_pred HHCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHC-EEEE---ECCCHHHHHHHHHHHHCCC
Q ss_conf 20648015799999998718942168772189999999999999709882241-1787---4254256789999998198
Q gi|254780137|r 151 EDIKAPECFEVERILSQKLKIPFLHDDQHGTAVTVTAATLNGMKLVGKKFSDI-KIVT---LGAGAAALACLNLLVTMGV 226 (779)
Q Consensus 151 EDi~~p~~f~i~~~l~~~~~ipvf~DD~qGTa~v~lA~llnAl~~~gk~l~~~-~iv~---~GaGaAg~~~a~ll~~~g~ 226 (779)
|+++..++++++.+.|.+ ..|+-+|+.+=.+.++.-.+...-..-.-...+. |+.+ .|.+.-...-++.|+.+|+
T Consensus 158 ~~~~~~ea~~~l~~~kie-klpvvd~~g~L~glit~kDi~k~~~~P~a~~D~~grL~VgAAVG~~~~~~eRa~~Lv~aGv 236 (467)
T pfam00478 158 EGITLEEANEILHEHKIE-KLPIVDDDGELVGLITRKDIEKARDYPNASKDAQGRLLVGAAVGTRDDDLERAEALVEAGV 236 (467)
T ss_pred CCCCHHHHHHHHHHHHHH-HCCEECCCCCEEEEEEHHHHHHHHCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHCCC
T ss_conf 889989999999975564-1544467883788887434677420785222656777999980678659999999987699
Q ss_pred CCCCEEEEEC
Q ss_conf 8575899955
Q gi|254780137|r 227 RRENIWVYDL 236 (779)
Q Consensus 227 ~~~~i~~~D~ 236 (779)
+++++|+
T Consensus 237 ---DvivIDt 243 (467)
T pfam00478 237 ---DVIVIDS 243 (467)
T ss_pred ---CEEEEEC
T ss_conf ---8899734
No 419
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=62.24 E-value=10 Score=17.00 Aligned_cols=31 Identities=16% Similarity=0.096 Sum_probs=15.2
Q ss_pred HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99999871894216877218999999999999970
Q gi|254780137|r 162 ERILSQKLKIPFLHDDQHGTAVTVTAATLNGMKLV 196 (779)
Q Consensus 162 ~~~l~~~~~ipvf~DD~qGTa~v~lA~llnAl~~~ 196 (779)
++.||+.. ++.|.--..+..+.+++-++-+.
T Consensus 58 ~~iy~~a~----wy~dvpEa~~ml~~~~~~~~~~~ 88 (410)
T PRK07424 58 EEIYRKAH----WYNDVPEALVMLLFGILPVLLVQ 88 (410)
T ss_pred HHHHHHHH----HHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99987621----52074889999999888998764
No 420
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=62.23 E-value=10 Score=17.00 Aligned_cols=33 Identities=12% Similarity=0.312 Sum_probs=26.6
Q ss_pred HCEEEEECCCHHHHHHHHHHHHC--CCCCCCEEEEECC
Q ss_conf 41178742542567899999981--9885758999559
Q gi|254780137|r 202 DIKIVTLGAGAAALACLNLLVTM--GVRRENIWVYDLE 237 (779)
Q Consensus 202 ~~~iv~~GaGaAg~~~a~ll~~~--g~~~~~i~~~D~~ 237 (779)
+.-|||.|+|-+|+.+|-.|... |. ++.++|+.
T Consensus 24 ~aDVvIIGgG~tGLstA~~L~~~~pg~---~VvvLEa~ 58 (460)
T TIGR03329 24 QADVCIVGGGFTGLWTAIMIKQQRPAL---DVLVLEAD 58 (460)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHCCCC---CEEEEECC
T ss_conf 551999994399999999999748999---88999489
No 421
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=62.03 E-value=11 Score=16.98 Aligned_cols=35 Identities=9% Similarity=0.342 Sum_probs=24.5
Q ss_pred CHHHCEEEEECCCHH-HHHHHHHHHHCCCCCCCEEEEEC
Q ss_conf 822411787425425-67899999981988575899955
Q gi|254780137|r 199 KFSDIKIVTLGAGAA-ALACLNLLVTMGVRRENIWVYDL 236 (779)
Q Consensus 199 ~l~~~~iv~~GaGaA-g~~~a~ll~~~g~~~~~i~~~D~ 236 (779)
+|+..++++.|+++. |-++++.|.+.|. +++++|+
T Consensus 2 ~l~gK~~lVTGas~GIG~aiA~~la~~Ga---~V~i~~r 37 (238)
T PRK05786 2 RLKGKNVLIVGVSPGLGYAVAYFALREGA---SVYAFAR 37 (238)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEEC
T ss_conf 87998899928987899999999998799---9999969
No 422
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=61.69 E-value=11 Score=16.94 Aligned_cols=121 Identities=12% Similarity=0.150 Sum_probs=63.0
Q ss_pred CCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCE
Q ss_conf 13557773499974736889898899999999999999818997299997025578889778999999999987379959
Q gi|254780137|r 601 SMCIVRDNFLFFTDTHVSAEPSAMEIADSTILASQAICSLGMRPKVSVLFHSNSGSHCIKSSLKMRDSFEKICELSKNLE 680 (779)
Q Consensus 601 ~il~~~~~~lFiaDtaVNi~PtaEqLAdIa~~aa~~ar~lGiePkVAlLS~SnfGs~~~~s~~kvr~A~eil~~~~pd~~ 680 (779)
-.+-..+++.|+=|.-=. ....+....+.|. .| |-++- -|..+..+-. ...+.++++-..+.
T Consensus 318 E~V~~~~gV~fiNDSKaT----------N~~a~~~Al~~~~-~~-iilI~---GG~~K~~d~~---~l~~~~~~~v~~v~ 379 (459)
T PRK02705 318 ERIGTINGIDFINDSKAT----------NYDAAEVGLKAVP-GP-IILIA---GGEAKQGDDS---AWLKQIKAKAAAVL 379 (459)
T ss_pred EEEEECCCEEEECCCCCC----------CHHHHHHHHHHCC-CC-EEEEE---CCCCCCCCHH---HHHHHHHHCCEEEE
T ss_conf 898742887897278788----------9899999998289-98-69995---6766678739---99999864061999
Q ss_pred EECCCCHHHHCCHHHHHHCCCCCCCCCCCCEEECCCHHHH-HHHHHHHHHHCCCEEECHHHCCCCCCEEECCCCCCHHHH
Q ss_conf 9867304653298989630899877777777881891288-899999998659868714431458987987876389889
Q gi|254780137|r 681 VDAIVQEEVCLSEIFCDKDVPNTSSSQDAQLLVFPNIDSA-NIALEMAKSVTNGLHIGTLLLGAALPVHIVPSSVSVREI 759 (779)
Q Consensus 681 VDGemq~D~AL~~~ia~~K~p~S~laG~ANVLIfPnLeAa-NI~yKllq~lgga~aiGPIL~G~~kPV~ilsr~~Sv~dI 759 (779)
.-|+-....+ +.+.+..+ ...+.++.+++.| ..++++.+. +++ .+.++|++|+.-|.
T Consensus 380 ~~G~~~~~i~--~~l~~~~~-------~~~~~~~~~l~~Av~~a~~~a~~-~~~------------~~VLlSPacaSfD~ 437 (459)
T PRK02705 380 LFGEAAPELA--QLLQESGY-------TGEIEIVETLDEAVNRAFELAKE-LQA------------KSVLLSPACASFDQ 437 (459)
T ss_pred EECCCHHHHH--HHHHHCCC-------CCCEEECCCHHHHHHHHHHHHHC-CCC------------CEEEECCCCCCCCC
T ss_conf 9898999999--99973699-------87769859999999999998765-899------------98996874401013
Q ss_pred HH
Q ss_conf 99
Q gi|254780137|r 760 ID 761 (779)
Q Consensus 760 vn 761 (779)
..
T Consensus 438 f~ 439 (459)
T PRK02705 438 YQ 439 (459)
T ss_pred CC
T ss_conf 27
No 423
>pfam07755 DUF1611 Protein of unknown function (DUF1611). This region is found in a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.
Probab=61.63 E-value=11 Score=16.93 Aligned_cols=62 Identities=16% Similarity=0.013 Sum_probs=30.8
Q ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 77349997473688989889999999999999981899729999702557888977899999999998737
Q gi|254780137|r 606 RDNFLFFTDTHVSAEPSAMEIADSTILASQAICSLGMRPKVSVLFHSNSGSHCIKSSLKMRDSFEKICELS 676 (779)
Q Consensus 606 ~~~~lFiaDtaVNi~PtaEqLAdIa~~aa~~ar~lGiePkVAlLS~SnfGs~~~~s~~kvr~A~eil~~~~ 676 (779)
++|..+-.-..+ .-|+.++..+.....+.. . -.+||.=+|-.+.+-. ....++..+.+.++.
T Consensus 225 p~R~~~~~~~~~-~iP~l~~~i~l~e~~a~~---~-~~~kvvgIslNt~~l~----~~ea~~~~~~~~~~~ 286 (302)
T pfam07755 225 PGRKHRRGFPHY-PLPPLEEEIELIEALAGT---T-PPAKVVGISLNTRGLS----EAEAREAIERIEEEL 286 (302)
T ss_pred CCCCEECCCCCC-CCCCHHHHHHHHHHHHCC---C-CCCEEEEEEECCCCCC----HHHHHHHHHHHHHHH
T ss_conf 898622787668-899989999999997364---7-9973999995578799----999999999999998
No 424
>PRK11445 putative oxidoreductase; Provisional
Probab=61.28 E-value=11 Score=16.89 Aligned_cols=35 Identities=14% Similarity=0.164 Sum_probs=27.2
Q ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHH-HHC
Q ss_conf 77349997473688989889999999999999-981
Q gi|254780137|r 606 RDNFLFFTDTHVSAEPSAMEIADSTILASQAI-CSL 640 (779)
Q Consensus 606 ~~~~lFiaDtaVNi~PtaEqLAdIa~~aa~~a-r~l 640 (779)
+++.+++.|++=.++|..-+=.--|..+.+.+ ..+
T Consensus 263 ~~~v~LvGDAAG~V~P~sGEGIyyAm~SGrlaAeaI 298 (348)
T PRK11445 263 KDNAFLIGEAAGFISASSLEGISYALDSARILREVL 298 (348)
T ss_pred CCCEEEEEEHHCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 899999981202458545121999999999999999
No 425
>PRK08774 consensus
Probab=61.25 E-value=11 Score=16.89 Aligned_cols=31 Identities=13% Similarity=0.294 Sum_probs=27.4
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf 1787425425678999999819885758999559
Q gi|254780137|r 204 KIVTLGAGAAALACLNLLVTMGVRRENIWVYDLE 237 (779)
Q Consensus 204 ~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~ 237 (779)
-|+|.|+|-.|...|-.|...|+ ++.++|+.
T Consensus 6 DVlIVGgGpvGl~lA~~La~~G~---~v~liE~~ 36 (402)
T PRK08774 6 DVLIVGGGLVGSSLAIALDRIGL---DVGLVEAT 36 (402)
T ss_pred CEEEECCCHHHHHHHHHHHCCCC---CEEEEECC
T ss_conf 78999916999999999966899---78999379
No 426
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=61.23 E-value=11 Score=16.89 Aligned_cols=20 Identities=25% Similarity=0.479 Sum_probs=8.8
Q ss_pred HHHHHHCC--CCCEEEEECCCC
Q ss_conf 88997218--997799917872
Q gi|254780137|r 285 PAILKFMA--EKPLIMVLANPN 304 (779)
Q Consensus 285 ~e~v~~M~--~~PiIfaLsNP~ 304 (779)
.-++..++ ..+-||=+--|+
T Consensus 88 ~~fl~~l~~~~~~~v~i~DR~~ 109 (372)
T cd04949 88 AFFLDELNKDTKPDVFILDRPT 109 (372)
T ss_pred HHHHHHHHHCCCCCEEEECCCC
T ss_conf 9999998516799989987865
No 427
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=61.11 E-value=11 Score=16.87 Aligned_cols=103 Identities=16% Similarity=0.173 Sum_probs=56.9
Q ss_pred HCEEEEECC-CHHHHHHHHHHHHC---CCCCC-CEEEEECCCEEECCCCCCCCHHHH--HHHHC-CCCCCHHHHCCCCCE
Q ss_conf 411787425-42567899999981---98857-589995596030787332667889--77450-889888886058837
Q gi|254780137|r 202 DIKIVTLGA-GAAALACLNLLVTM---GVRRE-NIWVYDLEGLVYEGREKKFDKWKS--VYAQK-SGPKPLSETMNNADV 273 (779)
Q Consensus 202 ~~~iv~~Ga-GaAg~~~a~ll~~~---g~~~~-~i~~~D~~Gli~~~r~~~~~~~~~--~~a~~-~~~~~l~ea~~~adv 273 (779)
-.||.+.|| |.-|-.++-.|... |..+. -+.++|..+-.-.-....|+-... ++-+. +-..+..++++++||
T Consensus 2 p~KV~IiGAaG~IG~~la~~la~g~l~g~~~~v~l~L~Di~~~~~~l~G~amDl~~~a~~~~~~v~~~~~~~~a~~~aDv 81 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADW 81 (322)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHCHHCCCCCEEEEEEECCCCCCCCCCEEEEEHHHCCCCCCCCEEEECCHHHHHCCCCE
T ss_conf 70999989996899999999971113079972699997575756667657744532676545877974887898378878
Q ss_pred EEECCC----CCCCCH--------HH-------HHHCC-CCCEEEEECCCCC
Q ss_conf 862578----877898--------89-------97218-9977999178720
Q gi|254780137|r 274 FLGLSV----AGALDP--------AI-------LKFMA-EKPLIMVLANPNP 305 (779)
Q Consensus 274 ~iG~S~----~g~~t~--------e~-------v~~M~-~~PiIfaLsNP~p 305 (779)
.+=+.+ ||- |+ ++ +...+ ++.+|+-.|||.-
T Consensus 82 VvitaG~prkPG~-tR~DLl~~Na~I~~~~~~~i~~~a~p~~~vivvsNPvd 132 (322)
T cd01338 82 ALLVGAKPRGPGM-ERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCN 132 (322)
T ss_pred EEEECCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHH
T ss_conf 9993687899898-18999998689999999999975798838999578188
No 428
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase; InterPro: IPR012819 Sucrose occupies a central position in the metabolic pathways of all plants and plays a variety of roles including transport sugar, storage reserve, compatible solute, and signal compound . This compound is produced by the combined action of two enzymes, sucrose-phosphate synthase (2.4.1.14 from EC) and sucrose-phosphate phosphatase (3.1.3.24 from EC), via the intermediate sucrose 6-phosphate. Several studies have shown a positive correlation between sucrose-phosphate synthase activity and plant growth rate and yield in agronomically important plants, though direct proof of a causal link is lacking. This entry represents sucrose-phosphate synthase from plants, which is known to exist in multigene families in several species of both monocots and dicots. The enzyme contains an N-terminal domain glucosyltransferase domain, a variable linker region, and a C-terminal domain similar to that of sucrose-phosphate phosphatase, the next and final enzyme of sucrose biosynthesis. The C-terminal domain is likely to serve a binding - not a catalytic - function, as sucrose-phosphate phosphatase is always encoded by a distinct protein. ; GO: 0046524 sucrose-phosphate synthase activity, 0005985 sucrose metabolic process.
Probab=61.07 E-value=6.6 Score=18.39 Aligned_cols=70 Identities=9% Similarity=0.017 Sum_probs=39.9
Q ss_pred EEECCCCCCCCEEEE--ECCCCCCCCCHHHHHHHHHHHHHHHHHC-CCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 100135577734999--7473688989889999999999999981-8997299997025578889778999999999987
Q gi|254780137|r 598 SAMSMCIVRDNFLFF--TDTHVSAEPSAMEIADSTILASQAICSL-GMRPKVSVLFHSNSGSHCIKSSLKMRDSFEKICE 674 (779)
Q Consensus 598 s~~~il~~~~~~lFi--aDtaVNi~PtaEqLAdIa~~aa~~ar~l-GiePkVAlLS~SnfGs~~~~s~~kvr~A~eil~~ 674 (779)
.+-|-++-..+.+|+ -||.-..--..+.+.++++...+.++.= ..+-.+.|+ -|| .+ .+.+..+.|..
T Consensus 773 ~~k~p~~rrR~~l~ViAvDc~~~~G~~~~~~~~~~~~i~~a~~~~~~~~~~~GF~-LST----s~----~~~E~~~~L~s 843 (1072)
T TIGR02468 773 ASKYPALRRRKRLFVIAVDCYDEDGKPDKDLLQVIKEIIEAVRKEDRAEGSSGFI-LST----SM----TISEVQSFLKS 843 (1072)
T ss_pred CCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEE-EEC----CC----CHHHHHHHHHH
T ss_conf 3457632366478999874225578740679999999999860244323432236-771----67----77899999985
Q ss_pred HC
Q ss_conf 37
Q gi|254780137|r 675 LS 676 (779)
Q Consensus 675 ~~ 676 (779)
..
T Consensus 844 ~~ 845 (1072)
T TIGR02468 844 GG 845 (1072)
T ss_pred CC
T ss_conf 68
No 429
>PTZ00092 aconitate hydratase; Provisional
Probab=60.99 E-value=11 Score=16.86 Aligned_cols=14 Identities=21% Similarity=0.216 Sum_probs=9.2
Q ss_pred HHCCCCCEEECCCC
Q ss_conf 86572100100446
Q gi|254780137|r 559 LKRGEGDGMICMCD 572 (779)
Q Consensus 559 V~~G~AD~lI~G~~ 572 (779)
-++|.-..|+-|..
T Consensus 709 sRRgNhevM~RgtF 722 (887)
T PTZ00092 709 SRRGNDEVMVRGTF 722 (887)
T ss_pred HHCCCHHHHHHHHH
T ss_conf 65267177653101
No 430
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=60.62 E-value=11 Score=16.81 Aligned_cols=93 Identities=20% Similarity=0.222 Sum_probs=45.1
Q ss_pred HHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCCC------CC---CHHHHCC-
Q ss_conf 2241178742542567899999981988575899955960307873326678897745088------98---8888605-
Q gi|254780137|r 200 FSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKSG------PK---PLSETMN- 269 (779)
Q Consensus 200 l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~~------~~---~l~ea~~- 269 (779)
-....++++|.|.=|++...-.+.+|.. +|+.+|. +++|..+|++-. .. .+.+++.
T Consensus 184 ~~G~tvaV~GlGgVGlaaI~gA~~agA~--~IiAvD~------------~~~Kl~~A~~fGAT~~vn~~~~~~vv~~i~~ 249 (366)
T COG1062 184 EPGDTVAVFGLGGVGLAAIQGAKAAGAG--RIIAVDI------------NPEKLELAKKFGATHFVNPKEVDDVVEAIVE 249 (366)
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHCCCC--EEEEEEC------------CHHHHHHHHHCCCCEEECCCCHHHHHHHHHH
T ss_conf 9998489990427669999989874885--4999937------------7789999986398246554002548999998
Q ss_pred ----CCCEEEECCC-CCCCCH--HHHHHCCCCCEEEEECCCCCCC
Q ss_conf ----8837862578-877898--8997218997799917872009
Q gi|254780137|r 270 ----NADVFLGLSV-AGALDP--AILKFMAEKPLIMVLANPNPEA 307 (779)
Q Consensus 270 ----~adv~iG~S~-~g~~t~--e~v~~M~~~PiIfaLsNP~pEi 307 (779)
|+|.-+-+.+ ..++.. ++... .-.-+|-.+++|..||
T Consensus 250 ~T~gG~d~~~e~~G~~~~~~~al~~~~~-~G~~v~iGv~~~~~~i 293 (366)
T COG1062 250 LTDGGADYAFECVGNVEVMRQALEATHR-GGTSVIIGVAGAGQEI 293 (366)
T ss_pred HCCCCCCEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCCCCCEE
T ss_conf 6278877899925998999999998743-7818999527987542
No 431
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=60.59 E-value=11 Score=16.81 Aligned_cols=33 Identities=15% Similarity=0.259 Sum_probs=29.2
Q ss_pred HCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf 411787425425678999999819885758999559
Q gi|254780137|r 202 DIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLE 237 (779)
Q Consensus 202 ~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~ 237 (779)
=.+|.+.|||.-|.+||.++...|. +++++|..
T Consensus 3 Ik~VaViGaG~MG~gIA~~~a~~G~---~V~l~D~~ 35 (291)
T PRK06035 3 IKVIGVVGSGVMGQGIAQVFARTGY---DVTIVDVS 35 (291)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC---CEEEEECC
T ss_conf 5889998876889999999995899---88999899
No 432
>PRK06125 short chain dehydrogenase; Provisional
Probab=60.41 E-value=11 Score=16.79 Aligned_cols=37 Identities=11% Similarity=0.218 Sum_probs=28.4
Q ss_pred CCHHHCEEEEECCCHH-HHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf 8822411787425425-678999999819885758999559
Q gi|254780137|r 198 KKFSDIKIVTLGAGAA-ALACLNLLVTMGVRRENIWVYDLE 237 (779)
Q Consensus 198 k~l~~~~iv~~GaGaA-g~~~a~ll~~~g~~~~~i~~~D~~ 237 (779)
.+|+..++++.|+++. |-+|++.|.+.|. +++++|++
T Consensus 3 ~~l~gK~alITG~s~GIG~aiA~~la~~Ga---~V~i~~r~ 40 (259)
T PRK06125 3 LHLAGKRVLITGASKGIGAAAAEAFAAEGC---HLVLAARD 40 (259)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEECC
T ss_conf 886999899968776899999999998799---89999798
No 433
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=60.26 E-value=11 Score=16.77 Aligned_cols=27 Identities=22% Similarity=0.511 Sum_probs=16.6
Q ss_pred HHCEEEEECCCHHHHHHHHHHHHCCCC
Q ss_conf 241178742542567899999981988
Q gi|254780137|r 201 SDIKIVTLGAGAAALACLNLLVTMGVR 227 (779)
Q Consensus 201 ~~~~iv~~GaGaAg~~~a~ll~~~g~~ 227 (779)
.+.-+++.|||.+|+-+|.-|-..|++
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk~g~k 55 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAKAGLK 55 (262)
T ss_pred HHCCEEEECCCCCHHHHHHHHHHCCCE
T ss_conf 432679987685057899999867964
No 434
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit; InterPro: IPR011808 Dissimilatory sulphite reductase catalyzes the six-electron reduction of sulphite to sulphide, as the terminal reaction in dissimilatory sulphate reduction. It remains unclear however, whether trithionate and thiosulphate serve as intermediate compounds to sulphide, or as end products of sulphite reduction . Sulphite reductase is a multisubunit enzyme composed of dimers of either alpha/beta or alpha/beta/gamma subunits, each containing a siroheme and iron sulphur cluster prosthetic centre . Found in sulphate-reducing bacteria, these genes are commonly located in a unidirectional gene cluster . This entry describes the beta subunit of sulphite reductase.; GO: 0018551 hydrogensulfite reductase activity, 0051539 4 iron 4 sulfur cluster binding, 0006118 electron transport.
Probab=60.00 E-value=2.4 Score=21.43 Aligned_cols=67 Identities=28% Similarity=0.269 Sum_probs=42.4
Q ss_pred HHHCCCCCCEEEEEE-------ECCCCCHH--HHHHHHCCHHHHHHHHHHHHHHHHH-HHHCCCCEEEEECCCCEECCCC
Q ss_conf 984058997279985-------04348855--7214307305799999998899888-7513584799981785002542
Q gi|254780137|r 26 LYHQYPSPGKLEVNA-------TKMLNDQK--DLSLAYSPGVAAPSMMIAEDPSKAA-MYTNRSNLVAVVSNGSAVLGLG 95 (779)
Q Consensus 26 ~~h~~~~~gk~~~~~-------~~~~~~~~--dl~~~ytpgva~~~~~i~~~~~~~~-~~t~~~n~vaVvtdGt~vLGLG 95 (779)
.||+..+||-|+-.+ |+..-|+| =||.-| +-+.| .|++.=..=| ++|.|+|.=-.|||-+-++-|=
T Consensus 10 Kyhe~~~PGvl~hvsetGd~~y~Vk~gtprna~vsV~t---lr~lc-DIADk~~dGylr~T~r~NvEFlv~d~~K~~~li 85 (366)
T TIGR02066 10 KYHEVVKPGVLEHVSETGDKIYTVKAGTPRNALVSVDT---LRKLC-DIADKYGDGYLRWTIRNNVEFLVSDESKVQPLI 85 (366)
T ss_pred EEEEECCCCEEEEEEECCCEEEEEEEECCCCCEEEHHH---HHHHH-HHCHHHCCCCEEEEECCCEEEEECCHHHHHHHH
T ss_conf 01202689728887624877899975079862561545---65563-001111576078741166568745878877999
Q ss_pred C
Q ss_conf 2
Q gi|254780137|r 96 D 96 (779)
Q Consensus 96 d 96 (779)
|
T Consensus 86 ~ 86 (366)
T TIGR02066 86 D 86 (366)
T ss_pred H
T ss_conf 9
No 435
>pfam00389 2-Hacid_dh D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain. This family represents the largest portion of the catalytic domain of 2-hydroxyacid dehydrogenases as the NAD binding domain is inserted within the structural domain.
Probab=59.98 E-value=11 Score=16.74 Aligned_cols=237 Identities=11% Similarity=0.084 Sum_probs=121.2
Q ss_pred HHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCC-CCCEEEHHHCCCCHHHHHHHHHHHHHCCCCCCCCCC---CHHHHHH
Q ss_conf 999862698526542388988999999987088-846062220648015799999998718942168772---1899999
Q gi|254780137|r 111 VLFKKFAGINVFDIEINAKDVDTMVSTIVALEP-TFGGINLEDIKAPECFEVERILSQKLKIPFLHDDQH---GTAVTVT 186 (779)
Q Consensus 111 ~L~k~~agid~~~i~~~~~d~~e~i~~v~~~~p-~fg~i~lEDi~~p~~f~i~~~l~~~~~ipvf~DD~q---GTa~v~l 186 (779)
-|.+.+.|.|++=+-..++=..|+++....+.- ...++-+..| . .+.+++ .+|+|+|=--- .+|=.++
T Consensus 32 el~~~~~~~d~li~~~~~~i~~e~l~~~~~LK~I~~~~~G~D~I------D-~~~a~~-~gI~V~n~p~~~~~aVAE~~i 103 (313)
T pfam00389 32 ELLEAAKDADALIVRSTTPVTAEVLEAAPGLKVIARRGVGVDNI------D-LDAATE-RGILVTNVPGYSTESVAELTV 103 (313)
T ss_pred HHHHHHCCCCEEEECCCCCCCHHHHHCCCCCEEEEECCCCCCHH------H-HHHHHH-CCCEEEECCCCCCHHHHHHHH
T ss_conf 99998389829998589976899994499984999888445530------5-999997-999999899877289999999
Q ss_pred HHHHHHHHH------------------HCCCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCC
Q ss_conf 999999997------------------09882241178742542567899999981988575899955960307873326
Q gi|254780137|r 187 AATLNGMKL------------------VGKKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKF 248 (779)
Q Consensus 187 A~llnAl~~------------------~gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~ 248 (779)
+-+|+.+|- .+..+...++.+.|.|.-|..+++++..+|. ++..+|.. ..+.
T Consensus 104 ~l~L~l~R~~~~~~~~~r~g~w~~~~~~~~~l~~~~~giiG~G~iG~~va~~~~~~g~---~v~~~d~~----~~~~--- 173 (313)
T pfam00389 104 GLILALARRIPEADASVRAGDWKKGGPIGLELRGKTLGVIGGGGIGGIGAAIAKALGM---GVVAYDPY----PNPE--- 173 (313)
T ss_pred HHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHCCC---EEEEEECC----CCHH---
T ss_conf 9999971230788999980876655655533689889999465436999999997698---69999579----9867---
Q ss_pred CHHHHHHHHCCCCCCHHHHC-CCCCEEEECC----CCCCCCHHHHHHCCCCCEEEEECCCCCCCCHHHHHHH-CCCEEEC
Q ss_conf 67889774508898888860-5883786257----8877898899721899779991787200998899851-8987980
Q gi|254780137|r 249 DKWKSVYAQKSGPKPLSETM-NNADVFLGLS----VAGALDPAILKFMAEKPLIMVLANPNPEAMPDEIKKV-RPDAMIC 322 (779)
Q Consensus 249 ~~~~~~~a~~~~~~~l~ea~-~~adv~iG~S----~~g~~t~e~v~~M~~~PiIfaLsNP~pEi~p~~a~~~-~g~aiva 322 (779)
..............+.+.+ ...|+++-+. ..+.+..+....|.++.+++--+---.-...+...+. .+..+-|
T Consensus 174 -~~~~~~~~~~~~~~~~~~l~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~~v~~~~ll~~l~~~~~~~a 252 (313)
T pfam00389 174 -RAEEGGVEVLLLDLLLLDLKESDDLINLAPPTTMKTGHIIINEARGMLKDAVAINNARGGGVIEEAALDALLEEGIAAA 252 (313)
T ss_pred -HHHHCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCE
T ss_conf -7764055311266668774126889994799986557711688984569962898337874163999999852876508
Q ss_pred -----CCCCCCC----CCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf -----5887887----743503455665456751373002678999999999987203
Q gi|254780137|r 323 -----TGRSDFS----NQVNNVLCFPYIFRGALDCGATAITEEMKVAAARAMAVLVRD 371 (779)
Q Consensus 323 -----tGrs~~p----nQ~NN~l~FPgif~Gal~~~A~~Itd~M~~aAa~alA~la~~ 371 (779)
..-++.+ -...|+++-|-|+-- ...-.+.|-..+++-+-+..+-
T Consensus 253 ~~dv~~~ep~~~~~~L~~~~nvi~TPHia~~-----T~ea~~~~~~~~~~ni~~~l~g 305 (313)
T pfam00389 253 ALDVVEEEPPPVNSPLLDLPNVILTPHIAGA-----TEEAQENMAEEAAENLLAFLKG 305 (313)
T ss_pred EEEECCCCCCCCCCHHHCCCCEEECCCHHHH-----HHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9997987799998747749899988946564-----8999999999999999999869
No 436
>PRK12839 hypothetical protein; Provisional
Probab=59.94 E-value=11 Score=16.74 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=8.5
Q ss_pred EEEECCCHHHHHHHHHHHHCCC
Q ss_conf 7874254256789999998198
Q gi|254780137|r 205 IVTLGAGAAALACLNLLVTMGV 226 (779)
Q Consensus 205 iv~~GaGaAg~~~a~ll~~~g~ 226 (779)
|||.|+|.||+..|-...+.|.
T Consensus 12 VvVVGsG~AGl~AAi~Aa~~Ga 33 (574)
T PRK12839 12 VIVVGSGAGGLSAAVSAAYGGK 33 (574)
T ss_pred EEEECCCHHHHHHHHHHHHCCC
T ss_conf 8998968999999999998899
No 437
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=59.79 E-value=11 Score=16.72 Aligned_cols=95 Identities=18% Similarity=0.164 Sum_probs=53.1
Q ss_pred HHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEEC--------CCEEECCCCCCCCHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf 2241178742542567899999981988575899955--------96030787332667889774508898888860588
Q gi|254780137|r 200 FSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDL--------EGLVYEGREKKFDKWKSVYAQKSGPKPLSETMNNA 271 (779)
Q Consensus 200 l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~--------~Gli~~~r~~~~~~~~~~~a~~~~~~~l~ea~~~a 271 (779)
.+..||.|.|||+=|.-.+-.|...|. +++++.+ +|+...+..... ...........+-+...
T Consensus 3 ~~~~kI~IiGaGAiG~~~a~~L~~aG~---~V~li~r~~~~ai~~~Gl~i~~~~g~~------~~~~~~~~~~~~~~~~~ 73 (313)
T PRK06249 3 SETPRIAIIGTGAIGGFYGAMLARAGF---DVHFLLRSDYEAVRENGLQVDSVHGDF------HLPQVQAYRSAEDMPPC 73 (313)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC---CEEEEECCHHHHHHHCCEEEEECCCCE------EECCCEEECCHHHCCCC
T ss_conf 998889999914999999999996699---569996755999986885999669828------97684023697783996
Q ss_pred CEEEECCCCCCCCHHH---HHHC-CCCCEEEEECCCC
Q ss_conf 3786257887789889---9721-8997799917872
Q gi|254780137|r 272 DVFLGLSVAGALDPAI---LKFM-AEKPLIMVLANPN 304 (779)
Q Consensus 272 dv~iG~S~~g~~t~e~---v~~M-~~~PiIfaLsNP~ 304 (779)
|+++-+..... +++. ++.+ .++.+|+.|-|=-
T Consensus 74 D~viv~vKs~~-~~~~~~~l~~~~~~~t~il~lQNG~ 109 (313)
T PRK06249 74 DWVLVGLKTTA-NALLAPLIPQVAAPGAKVLLLQNGL 109 (313)
T ss_pred CEEEEECCCCC-HHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 58999536677-8999998786448995899944766
No 438
>PRK05398 formyl-coenzyme A transferase; Provisional
Probab=59.51 E-value=12 Score=16.69 Aligned_cols=129 Identities=18% Similarity=0.217 Sum_probs=75.6
Q ss_pred CCCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCC--EEECCCCCC-CCHHHHHHH-HCCCCC----------
Q ss_conf 988224117874254256789999998198857589995596--030787332-667889774-508898----------
Q gi|254780137|r 197 GKKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEG--LVYEGREKK-FDKWKSVYA-QKSGPK---------- 262 (779)
Q Consensus 197 gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~G--li~~~r~~~-~~~~~~~~a-~~~~~~---------- 262 (779)
-++|+.+||+=++..-||=.|..+|-.+|+ .++-+.+-| =.+...... -+....+|. .+.+.+
T Consensus 2 ~~PL~GirVldl~~~~agP~~~~~LadlGA---eVIKVE~p~~GD~~R~~~~~~~~~~s~~f~~~nr~Krsi~ldlk~~~ 78 (416)
T PRK05398 2 SKPLEGIKILDFTHVQSGPSCTQLLAWFGA---DVIKVERPGVGDVTRNQLRDIPDVDSLYFTMLNSNKRSITLNTKTPE 78 (416)
T ss_pred CCCCCCCEEEECCCCHHHHHHHHHHHHCCC---EEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEECCCHH
T ss_conf 988899989982772389999999998699---69998878998754345788989750888984899869998692978
Q ss_pred ---CHHHHCCCCCEEEECCCCCC-----CCHHHHHHCCCCCEEEEEC-----CCCCCC-CHHHHHHHCCCEEECCCCCCC
Q ss_conf ---88886058837862578877-----8988997218997799917-----872009-988998518987980588788
Q gi|254780137|r 263 ---PLSETMNNADVFLGLSVAGA-----LDPAILKFMAEKPLIMVLA-----NPNPEA-MPDEIKKVRPDAMICTGRSDF 328 (779)
Q Consensus 263 ---~l~ea~~~adv~iG~S~~g~-----~t~e~v~~M~~~PiIfaLs-----NP~pEi-~p~~a~~~~g~aivatGrs~~ 328 (779)
.+.+.++.|||||--..||+ ++.|-++.-|++=|.--+| .|...- -++...++.+.....||..+.
T Consensus 79 G~~~~~~L~~~aDV~ien~rpg~~~rlGl~ye~L~~~NP~lIy~sisgfG~~GP~~~~p~~D~~~qA~sG~~~~~G~~~~ 158 (416)
T PRK05398 79 GKEVLEKLIREADVLVENFGPGALDRMGFTWERIQEINPRLIVASIKGFGEGSPYEDVKAYENVAQCAGGAASTTGFWDG 158 (416)
T ss_pred HHHHHHHHHHHCCCCEECCCCCHHHHHCCCHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCHHHCCCCCC
T ss_conf 99999999985784523678417988077605543689705764152079999763567877888986163321489999
No 439
>PRK07041 short chain dehydrogenase; Provisional
Probab=59.31 E-value=12 Score=16.67 Aligned_cols=37 Identities=16% Similarity=0.340 Sum_probs=29.3
Q ss_pred CCHHHCEEEEECCCHH-HHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf 8822411787425425-678999999819885758999559
Q gi|254780137|r 198 KKFSDIKIVTLGAGAA-ALACLNLLVTMGVRRENIWVYDLE 237 (779)
Q Consensus 198 k~l~~~~iv~~GaGaA-g~~~a~ll~~~g~~~~~i~~~D~~ 237 (779)
-.|+..+++|.|+++. |-++++.|.+.|. +++++|++
T Consensus 3 ~~l~gK~~lITGgs~GIG~aia~~la~~Ga---~V~i~~r~ 40 (240)
T PRK07041 3 MSLNDQKVLVVGGSSGIGLAAARAFAARGA---DVTIASRS 40 (240)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEECC
T ss_conf 885999899957788899999999998799---99999598
No 440
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=59.29 E-value=12 Score=16.66 Aligned_cols=94 Identities=22% Similarity=0.223 Sum_probs=53.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEEC-------CCEEECCCCCCCCHHHHHHHHCCCCCCHHHHCCCCCEEE
Q ss_conf 1178742542567899999981988575899955-------960307873326678897745088988888605883786
Q gi|254780137|r 203 IKIVTLGAGAAALACLNLLVTMGVRRENIWVYDL-------EGLVYEGREKKFDKWKSVYAQKSGPKPLSETMNNADVFL 275 (779)
Q Consensus 203 ~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~-------~Gli~~~r~~~~~~~~~~~a~~~~~~~l~ea~~~adv~i 275 (779)
.||.|.|||+=|.-.+-.|...| ..=.+|.=++ +||...+-.+ .+..........+....+|++|
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g-~~V~~~~R~~~~~~l~~~GL~i~~~~~-------~~~~~~~~~~~~~~~~~~Dlvi 72 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG-HDVTLLVRSRRLEALKKKGLRIEDEGG-------NFTTPVVAATDAEALGPADLVI 72 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CCEEEEECHHHHHHHHHCCEEEEECCC-------CCCCCCCCCCCCCCCCCCCEEE
T ss_conf 95999878789999999998589-957998108999999878979981688-------5224432356733367888899
Q ss_pred ECCCCCCCCHHHHHHCC----CCCEEEEECCCCC
Q ss_conf 25788778988997218----9977999178720
Q gi|254780137|r 276 GLSVAGALDPAILKFMA----EKPLIMVLANPNP 305 (779)
Q Consensus 276 G~S~~g~~t~e~v~~M~----~~PiIfaLsNP~p 305 (779)
-. ..--.++++++... ++.+|..|-|=-.
T Consensus 73 v~-vKa~q~~~al~~l~~~~~~~t~vl~lqNG~g 105 (307)
T COG1893 73 VT-VKAYQLEEALPSLAPLLGPNTVVLFLQNGLG 105 (307)
T ss_pred EE-ECCCCHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 98-0422389999998730799848999708972
No 441
>PRK09072 short chain dehydrogenase; Provisional
Probab=59.12 E-value=12 Score=16.64 Aligned_cols=36 Identities=17% Similarity=0.281 Sum_probs=29.0
Q ss_pred CHHHCEEEEECCCHH-HHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf 822411787425425-678999999819885758999559
Q gi|254780137|r 199 KFSDIKIVTLGAGAA-ALACLNLLVTMGVRRENIWVYDLE 237 (779)
Q Consensus 199 ~l~~~~iv~~GaGaA-g~~~a~ll~~~g~~~~~i~~~D~~ 237 (779)
+|+..++++.||.+. |-++++.|.+.|. ++++++++
T Consensus 2 ~l~~K~vlITGassGIG~a~A~~la~~G~---~vil~~R~ 38 (262)
T PRK09072 2 DLKDKRVLLTGASGGIGEALAEALCAAGA---RLLLVGRN 38 (262)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEECC
T ss_conf 98998899948623999999999998799---89999898
No 442
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=59.00 E-value=12 Score=16.63 Aligned_cols=37 Identities=30% Similarity=0.440 Sum_probs=30.4
Q ss_pred HHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEE
Q ss_conf 2411787425425678999999819885758999559603
Q gi|254780137|r 201 SDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLV 240 (779)
Q Consensus 201 ~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli 240 (779)
..-.+||.|||-.|+.+|-+|...|. ++.+++++-.+
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G~---~V~VlE~~~~~ 38 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAGL---KVTVLEKNDRV 38 (487)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC---EEEEEECCCCC
T ss_conf 97629998988789999999996899---79999637888
No 443
>TIGR01835 HMG-CoA-S_prok hydroxymethylglutaryl-CoA synthase; InterPro: IPR011554 Synonym(s): 3-hydroxy-3-methylglutaryl-coenzyme A synthase, HMG-CoA synthase. Hydroxymethylglutaryl-CoA synthase (2.3.3.10 from EC) catalyses the condensation of acetyl-CoA with acetoacetyl-CoA to produce HMG-CoA and CoA, the second reaction in the mevalonate-dependent isoprenoid biosynthesis pathway. HMG-CoA synthase contains an important catalytic cysteine residue that acts as a nucleophile in the first step of the reaction: the acetylation of the enzyme by acetyl-CoA (its first substrate) to produce an acetyl-enzyme thioester, releasing the reduced coenzyme A. The subsequent nucleophilic attack on acetoacetyl-CoA (its second substrate) leads to the formation of HMG-CoA . HMG-CoA synthase occurs in eukaryotes, archaea and certain bacteria . In vertebrates, there are two isozymes located in different subcellular compartments: a cytosolic form that is the starting point of the mevalonate pathway (leads to cholesterol and other sterolic and isoprenoid compounds), and a mitochondrial form responsible for ketone body biosynthesis. HMG-CoA is also found in other eukaryotes such as insects, plants and fungi . In bacteria, isoprenoid precursors are generally synthesised via an alternative, non-mevalonate pathway, however a number of Gram-positive pathogens utilise a mevalonate pathway involving HMG-CoA synthase that is parallel to that found in eukaryotes , . This entry represents HMG-CoA synthase enzymes found in a limited spectrum of mostly Gram-positive bacteria, which make isopentenyl pyrophosphate (IPP) via the mevalonate pathway..
Probab=58.76 E-value=12 Score=16.60 Aligned_cols=158 Identities=22% Similarity=0.325 Sum_probs=101.7
Q ss_pred EEEHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCC--CHHHCEEEEECCC-------HHHHHH
Q ss_conf 0622206480157999999987189421687721899999999999997098--8224117874254-------256789
Q gi|254780137|r 147 GINLEDIKAPECFEVERILSQKLKIPFLHDDQHGTAVTVTAATLNGMKLVGK--KFSDIKIVTLGAG-------AAALAC 217 (779)
Q Consensus 147 ~i~lEDi~~p~~f~i~~~l~~~~~ipvf~DD~qGTa~v~lA~llnAl~~~gk--~l~~~~iv~~GaG-------aAg~~~ 217 (779)
||.+|-|+ --|...||+.|.+|-.+.| +||+|+==+..-+... +.+++++|++|-= ||++-+
T Consensus 30 gv~p~K~~----~GIgatLQ~~~~~~~~~eD-----iVTmAA~Aa~~Il~~~nLd~~~Id~Vi~gTESgID~SKAaavyv 100 (412)
T TIGR01835 30 GVDPEKFS----KGIGATLQKKMAVPPIDED-----IVTMAASAAKPILDRNNLDKQKIDMVIFGTESGIDQSKAAAVYV 100 (412)
T ss_pred CCCHHHHH----HHHHHHHHHHCCCCCCCCC-----HHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCHHHHHHHHHHH
T ss_conf 76643575----7743677765068978864-----57889999997432420684423478975105266899999999
Q ss_pred HHHHHHCCCCC-CCEEEEECCCEEECCCCCCCCHHHHHHHHCCC-CCCHHHHCCCCCE-EEECCCCCCCCHH--HHHHC-
Q ss_conf 99999819885-75899955960307873326678897745088-9888886058837-8625788778988--99721-
Q gi|254780137|r 218 LNLLVTMGVRR-ENIWVYDLEGLVYEGREKKFDKWKSVYAQKSG-PKPLSETMNNADV-FLGLSVAGALDPA--ILKFM- 291 (779)
Q Consensus 218 a~ll~~~g~~~-~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~~-~~~l~ea~~~adv-~iG~S~~g~~t~e--~v~~M- 291 (779)
..||---+..| .||..+.-|-.=|-- +-.|+-.+...++.++ ...|.= ..|| ==|+-.||--|+- -|...
T Consensus 101 h~LLgl~p~cRGnnFL~~ElK~ACYGA-TAaLq~A~~hv~~~P~s~kVLVi---aSDiAkY~~~t~GE~TQGAGAVA~Li 176 (412)
T TIGR01835 101 HGLLGLQPFCRGNNFLSFELKQACYGA-TAALQMAKGHVARSPNSRKVLVI---ASDIAKYGLETPGEATQGAGAVAMLI 176 (412)
T ss_pred HHHHCCCCCCCCCCEEEEEHHHHHHHH-HHHHHHHHHHHHHCCCCCEEEEE---EEEEEECCCCCCCCCCHHHHHHHHHH
T ss_conf 998277843104542243277777999-99999999998518886601688---86311227798988616689999987
Q ss_pred CCCCEEEEECCCCCCCCHHHHHH-HCC
Q ss_conf 89977999178720099889985-189
Q gi|254780137|r 292 AEKPLIMVLANPNPEAMPDEIKK-VRP 317 (779)
Q Consensus 292 ~~~PiIfaLsNP~pEi~p~~a~~-~~g 317 (779)
.++|=|+++-++.--.--+|++- ||+
T Consensus 177 ~~dP~~l~i~~~~~G~~T~DimDFWRP 203 (412)
T TIGR01835 177 SADPKLLAINEDSVGLYTDDIMDFWRP 203 (412)
T ss_pred HCCCHHHHCCCCCCCEECCCCCCCCCC
T ss_conf 418012001587653121331212178
No 444
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase; InterPro: IPR005762 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC) and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales . This entry represents UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD). MurD catalyses the addition of d-glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-l-alanine. ; GO: 0005524 ATP binding, 0008764 UDP-N-acetylmuramoylalanine-D-glutamate ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm.
Probab=58.64 E-value=12 Score=16.59 Aligned_cols=129 Identities=10% Similarity=0.063 Sum_probs=69.3
Q ss_pred ECCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 01355777349997473688989889999999999999981899729999702557888977899999999998737995
Q gi|254780137|r 600 MSMCIVRDNFLFFTDTHVSAEPSAMEIADSTILASQAICSLGMRPKVSVLFHSNSGSHCIKSSLKMRDSFEKICELSKNL 679 (779)
Q Consensus 600 ~~il~~~~~~lFiaDtaVNi~PtaEqLAdIa~~aa~~ar~lGiePkVAlLS~SnfGs~~~~s~~kvr~A~eil~~~~pd~ 679 (779)
|-.+-..++..|+=|. +|-....+....+.|..+-||.+|- -|..++.+=. ...+.++.+...+
T Consensus 334 lE~~~~~~G~~f~NDS----------KATn~~At~~AL~~~~~~~~~~LI~---GG~~KG~df~---~L~~~~~~~~~~~ 397 (476)
T TIGR01087 334 LEYVGQKNGVHFINDS----------KATNVHATLAALSALKNPKRVILIV---GGDDKGADFS---PLAPALKKKVKAV 397 (476)
T ss_pred EEEEEECCCEEEEECC----------CCCCHHHHHHHHHHCCCCCEEEEEE---ECCCCCCCHH---HHHHHHCCCEEEE
T ss_conf 6887772854798256----------2121899999998479997189996---0346899848---9999843650799
Q ss_pred EEECCCCHHHHCCHHHHHHCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCEEECHHHCCCCCCEEECCCCCCHHHH
Q ss_conf 99867304653298989630899877777777881891288899999998659868714431458987987876389889
Q gi|254780137|r 680 EVDAIVQEEVCLSEIFCDKDVPNTSSSQDAQLLVFPNIDSANIALEMAKSVTNGLHIGTLLLGAALPVHIVPSSVSVREI 759 (779)
Q Consensus 680 ~VDGemq~D~AL~~~ia~~K~p~S~laG~ANVLIfPnLeAaNI~yKllq~lgga~aiGPIL~G~~kPV~ilsr~~Sv~dI 759 (779)
..-|+-..-.|=.- +...+..+ . -|.=++-+++.| ++........ | +-=|.+||++|..-|.
T Consensus 398 ~~~G~~~~~~~~~l---~~~~~~~~-~--~~~~~~~~l~~A---v~~a~~~~~~---g------~~d~vLLSPacASFDq 459 (476)
T TIGR01087 398 LAIGEDAAKIAKLL---KEIGLVVK-Y--GEETLVESLEEA---VQAAREVAKE---G------NADVVLLSPACASFDQ 459 (476)
T ss_pred EEECCCHHHHHHHH---HHCCCCCC-C--CCCHHHHHHHHH---HHHHHHHHCC---C------CCCEEEECCCCCCHHH
T ss_conf 98535478999986---34276435-4--653057789999---9999997127---9------9767988864121777
Q ss_pred HHH
Q ss_conf 999
Q gi|254780137|r 760 IDM 762 (779)
Q Consensus 760 vn~ 762 (779)
.+.
T Consensus 460 F~~ 462 (476)
T TIGR01087 460 FKS 462 (476)
T ss_pred HCC
T ss_conf 303
No 445
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD; InterPro: IPR014104 Members of this family are encoded by slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. (strain PCC 6803), and close homologues (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyses the first step that is committed to myxoxanthophyll..
Probab=58.46 E-value=12 Score=16.57 Aligned_cols=26 Identities=38% Similarity=0.635 Sum_probs=22.8
Q ss_pred HCEEEEECCCHHHHHHHHHHHHCCCC
Q ss_conf 41178742542567899999981988
Q gi|254780137|r 202 DIKIVTLGAGAAALACLNLLVTMGVR 227 (779)
Q Consensus 202 ~~~iv~~GaGaAg~~~a~ll~~~g~~ 227 (779)
+..||+.|||-||.-.|-||-..|..
T Consensus 1 ~~~VvVIGaGIaGLTaAALLA~~G~~ 26 (499)
T TIGR02733 1 ETSVVVIGAGIAGLTAAALLAKRGYR 26 (499)
T ss_pred CCEEEEEECCHHHHHHHHHHHHCCCC
T ss_conf 97069981872678999999853996
No 446
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric; InterPro: IPR006004 One pathway for the assimilation of ammonia and glutamate biosynthesis involves homotetrameric glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate . 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. .
Probab=58.31 E-value=10 Score=17.01 Aligned_cols=26 Identities=38% Similarity=0.643 Sum_probs=12.9
Q ss_pred HHCEEEEECCCHHHHHHHHHHHHCCC
Q ss_conf 24117874254256789999998198
Q gi|254780137|r 201 SDIKIVTLGAGAAALACLNLLVTMGV 226 (779)
Q Consensus 201 ~~~~iv~~GaGaAg~~~a~ll~~~g~ 226 (779)
+..||-+.|||-||++||.-+-.+|-
T Consensus 141 t~~kVAViGaGPAGL~cA~elAk~Gh 166 (462)
T TIGR01316 141 TKKKVAVIGAGPAGLACASELAKKGH 166 (462)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHCCC
T ss_conf 88779998468214688999974798
No 447
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=58.00 E-value=12 Score=16.52 Aligned_cols=23 Identities=4% Similarity=0.033 Sum_probs=9.9
Q ss_pred CCCHHHHHHCC-CCCEEEEECCCC
Q ss_conf 78988997218-997799917872
Q gi|254780137|r 282 ALDPAILKFMA-EKPLIMVLANPN 304 (779)
Q Consensus 282 ~~t~e~v~~M~-~~PiIfaLsNP~ 304 (779)
...+||++... +.+....+++|.
T Consensus 237 ~~N~em~~~~~~~~~~~~~~~~~~ 260 (515)
T PRK12837 237 EQNDDMRERYGVPGSARDTMGGPG 260 (515)
T ss_pred CCCHHHHHHCCCCCCCCCCCCCCC
T ss_conf 548999997089755566558988
No 448
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=57.83 E-value=12 Score=16.50 Aligned_cols=115 Identities=11% Similarity=0.133 Sum_probs=58.5
Q ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEC
Q ss_conf 57773499974736889898899999999999999818997299997025578889778999999999987379959986
Q gi|254780137|r 604 IVRDNFLFFTDTHVSAEPSAMEIADSTILASQAICSLGMRPKVSVLFHSNSGSHCIKSSLKMRDSFEKICELSKNLEVDA 683 (779)
Q Consensus 604 ~~~~~~lFiaDtaVNi~PtaEqLAdIa~~aa~~ar~lGiePkVAlLS~SnfGs~~~~s~~kvr~A~eil~~~~pd~~VDG 683 (779)
-..++..|+=|.- -.+| ..+....+.|. .++|-++- .|-.++.+-.. ..+.++++...+.+-|
T Consensus 270 ~~~~gv~fiNDSK-ATN~---------~At~~Al~~~~-~~~iilI~---GG~~Kg~d~~~---L~~~i~~~~~~v~~~G 332 (401)
T PRK03815 270 RDKQGRLWVDDSK-ATNI---------DATIQALKRYK-DKKIHLIL---GGDDKGVDLTP---LFEELKNFDIEIYAIG 332 (401)
T ss_pred EEECCEEEECCCC-CCCH---------HHHHHHHHHCC-CCCEEEEE---CCCCCCCCHHH---HHHHHHHHCEEEEEEC
T ss_conf 9848989966887-8988---------99999998376-78679996---37655678799---9999764056999987
Q ss_pred CCCHHHHCCHHHHHHCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCEEECHHHCCCCCCEEECCCCCCHHHHH
Q ss_conf 73046532989896308998777777778818912888999999986598687144314589879878763898899
Q gi|254780137|r 684 IVQEEVCLSEIFCDKDVPNTSSSQDAQLLVFPNIDSANIALEMAKSVTNGLHIGTLLLGAALPVHIVPSSVSVREII 760 (779)
Q Consensus 684 emq~D~AL~~~ia~~K~p~S~laG~ANVLIfPnLeAaNI~yKllq~lgga~aiGPIL~G~~kPV~ilsr~~Sv~dIv 760 (779)
+-.-... +..++ + ..++..+.+++.| .+.....+.. | -+.++|++|+.-|..
T Consensus 333 ~~~~~i~---~~~~~-~-------~~~~~~~~~l~eA---v~~a~~~a~~---g--------dvVLLSPacASfD~F 384 (401)
T PRK03815 333 SNAEKIL---ALAKE-F-------NIKAQKCEFLEKA---VNEIKKVLKQ---N--------EVALLSPAAASLDQF 384 (401)
T ss_pred CCHHHHH---HHHHH-C-------CCCEEECCCHHHH---HHHHHHHCCC---C--------CEEEECCCCCCCCCC
T ss_conf 8999999---99875-6-------9846982869999---9999985789---7--------989989744030020
No 449
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=57.73 E-value=12 Score=16.49 Aligned_cols=34 Identities=12% Similarity=0.315 Sum_probs=27.7
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEE
Q ss_conf 1787425425678999999819885758999559603
Q gi|254780137|r 204 KIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLV 240 (779)
Q Consensus 204 ~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli 240 (779)
+++|.|||-+|.-+|+.+..+|- ++.++|++--|
T Consensus 3 d~lIVGaGlsG~V~A~~a~~~gk---~VLIvekR~HI 36 (374)
T COG0562 3 DYLIVGAGLSGAVIAEVAAQLGK---RVLIVEKRNHI 36 (374)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC---EEEEEECCCCC
T ss_conf 58998776268899999997598---79999625667
No 450
>pfam03435 Saccharop_dh Saccharopine dehydrogenase. This family comprised of three structural domains that can not be separated in the linear sequence. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase. The saccharopine dehydrogenase can also function as a saccharopine reductase.
Probab=57.61 E-value=12 Score=16.47 Aligned_cols=94 Identities=18% Similarity=0.205 Sum_probs=54.2
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHH------H---HCCCCCCHHHHCCCCCEEE
Q ss_conf 787425425678999999819885758999559603078733266788977------4---5088988888605883786
Q gi|254780137|r 205 IVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVY------A---QKSGPKPLSETMNNADVFL 275 (779)
Q Consensus 205 iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~------a---~~~~~~~l~ea~~~adv~i 275 (779)
|+++|+|.-|-.+++.|.+...- .+|.+.|+. ..+ ........ . ...+...|.+.+++.|++|
T Consensus 1 IlvlGaG~vG~~~~~~L~~~~~~-~~i~vad~~----~~~---~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~diVv 72 (384)
T pfam03435 1 VLIIGAGGVGQGVAPLLARHGDV-DEITVADRS----LEK---AQALAAPKLGLRFIAIAVDADNYEALAALLKEGDLVI 72 (384)
T ss_pred CEEECCCHHHHHHHHHHHHCCCC-CEEEEEECC----HHH---HHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCEEE
T ss_conf 98989778799999999728998-869999898----899---8987752369853899957789999999871289999
Q ss_pred ECCCCCCCCHHHHHHCCCCCE-EEEECCCCCCC
Q ss_conf 257887789889972189977-99917872009
Q gi|254780137|r 276 GLSVAGALDPAILKFMAEKPL-IMVLANPNPEA 307 (779)
Q Consensus 276 G~S~~g~~t~e~v~~M~~~Pi-IfaLsNP~pEi 307 (779)
-+.. ..+...+++.-.+.-+ .+-+|-.++++
T Consensus 73 ~~~p-~~~~~~i~~~c~~~g~~yvd~s~~~~~~ 104 (384)
T pfam03435 73 NLAP-PFLSLTVLKACIETGVHYVDTSYLREAQ 104 (384)
T ss_pred ECCC-HHHCHHHHHHHHHCCCCEEECCCCHHHH
T ss_conf 9984-3416999999997399757534366889
No 451
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase family protein; InterPro: IPR005720 Dihydroorotate dehydrogenase (1.3.3.1 from EC) (DHOdehase) catalyzes the fourth step in the de novo biosynthesis of pyrimidine, the conversion of dihydroorotate into orotate. DHOdehase is a ubiquitous FAD flavoprotein. In bacteria (gene pyrD), DHOdease is located on the inner side of the cytosolic membrane. In some yeasts, such as in Saccharomyces cerevisiae (gene URA1, subfamily 2), it is a cytosolic protein while in other eukaryotes it is found in the mitochondria . This describes dihydroorotate dehydrogenases subfamily 1 that includes a number of uncharacterised proteins and a domain of dihydropyrimidine dehydrogenase.; GO: 0004158 dihydroorotate oxidase activity, 0006207 'de novo' pyrimidine base biosynthetic process, 0005737 cytoplasm.
Probab=57.60 E-value=12 Score=16.48 Aligned_cols=14 Identities=14% Similarity=0.211 Sum_probs=8.6
Q ss_pred CCHHHHHHHHHHHC
Q ss_conf 98899999998708
Q gi|254780137|r 129 KDVDTMVSTIVALE 142 (779)
Q Consensus 129 ~d~~e~i~~v~~~~ 142 (779)
+++|||++.++.++
T Consensus 103 ~~~EEfa~va~~~e 116 (308)
T TIGR01037 103 ESEEEFAEVAEKLE 116 (308)
T ss_pred CCCHHHHHHHHHHH
T ss_conf 88225899999872
No 452
>PRK08268 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=57.56 E-value=12 Score=16.47 Aligned_cols=114 Identities=16% Similarity=0.245 Sum_probs=57.6
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEEC-CCCC------------CCCH--HHHHHHHCCCCCCHHHH
Q ss_conf 1178742542567899999981988575899955960307-8733------------2667--88977450889888886
Q gi|254780137|r 203 IKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYE-GREK------------KFDK--WKSVYAQKSGPKPLSET 267 (779)
Q Consensus 203 ~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~-~r~~------------~~~~--~~~~~a~~~~~~~l~ea 267 (779)
.||.+.|||.-|.||+..+...|. +++++|.+--..+ .+.. .+++ .....++-+...++. .
T Consensus 4 ~~VaViGaGtMG~gIA~~~a~aG~---~V~l~D~~~~~l~~a~~~i~~~l~~~~~~g~~~~~~~~~~~~ri~~~~~l~-~ 79 (503)
T PRK08268 4 ATVAVIGAGAMGAGIAQVAAQAGH---TVLLYDARAGAAAAARDGIAATLAKLVEKGKLTAEQAEAALARLRPVEALA-D 79 (503)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCEEECCHH-H
T ss_conf 789997968899999999993899---089997998999999999999999999769999889999984747417788-9
Q ss_pred CCCCCEEEECCCC-CCCCHHHHHHC---CCCCEEEEECCCCCCCCHHHHHH--HCCCEEEC
Q ss_conf 0588378625788-77898899721---89977999178720099889985--18987980
Q gi|254780137|r 268 MNNADVFLGLSVA-GALDPAILKFM---AEKPLIMVLANPNPEAMPDEIKK--VRPDAMIC 322 (779)
Q Consensus 268 ~~~adv~iG~S~~-g~~t~e~v~~M---~~~PiIfaLsNP~pEi~p~~a~~--~~g~aiva 322 (779)
+.++|+.|=.-.- =-+++++.+.. ++.-.||+- | |+-+...+... .++..++.
T Consensus 80 l~~aDlVIEAV~E~l~~K~~vf~~l~~~~~~~~IlAS-N-TSsL~it~iA~~~~~PeR~iG 138 (503)
T PRK08268 80 LADCDLVVEAIVERLDVKQALFAQLEAIVSDDCILAT-N-TSSLSITAIAAALKHPERVAG 138 (503)
T ss_pred HCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEE-C-CCCCCHHHHHHHCCCCCEEEE
T ss_conf 7579999993606789999999999854798857984-1-776779999974698440788
No 453
>PRK06815 hypothetical protein; Provisional
Probab=57.37 E-value=13 Score=16.45 Aligned_cols=88 Identities=17% Similarity=0.166 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHCCCCCEEEHHHCCCCHHHHHHHHHHHHHC--CCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHCEEEEE
Q ss_conf 8999999987088846062220648015799999998718--94216877218999999999999970988224117874
Q gi|254780137|r 131 VDTMVSTIVALEPTFGGINLEDIKAPECFEVERILSQKLK--IPFLHDDQHGTAVTVTAATLNGMKLVGKKFSDIKIVTL 208 (779)
Q Consensus 131 ~~e~i~~v~~~~p~fg~i~lEDi~~p~~f~i~~~l~~~~~--ipvf~DD~qGTa~v~lA~llnAl~~~gk~l~~~~iv~~ 208 (779)
-|++.++-+.+.|.++---| .-.++|.+.+. |-.=+++.|-|+..=.-|-+|.++...+......||..
T Consensus 5 ~~~i~~a~~~i~~~i~~TPL---------~~~~~Ls~~~g~~i~~K~E~~nptGSfKdRgA~~~i~~l~~~~~~~gVv~a 75 (318)
T PRK06815 5 FDAILEAHQALRPQVRVTPL---------EHSPLLSAHTGCEIYLKCEHLQHTGSFKFRGASNKLRLLPEAQRQQGVITA 75 (318)
T ss_pred HHHHHHHHHHHHCCCCCCCE---------EEHHHHHHHHCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 99999999987185888800---------217776498699899985247974689999999999998871225748993
Q ss_pred CCCHHHHHHHHHHHHCCCC
Q ss_conf 2542567899999981988
Q gi|254780137|r 209 GAGAAALACLNLLVTMGVR 227 (779)
Q Consensus 209 GaGaAg~~~a~ll~~~g~~ 227 (779)
-+|-.|+++|-.-..+|.+
T Consensus 76 SsGN~G~alA~~aa~~G~~ 94 (318)
T PRK06815 76 SSGNHGQGVALAAKLAGIP 94 (318)
T ss_pred CCCCHHHHHHHHHHHCCCC
T ss_conf 6883799999999983997
No 454
>PRK08643 acetoin reductase; Validated
Probab=57.17 E-value=11 Score=16.84 Aligned_cols=20 Identities=25% Similarity=0.321 Sum_probs=9.8
Q ss_pred HHHHHHHHHHCCCCCCCEEEEEC
Q ss_conf 67899999981988575899955
Q gi|254780137|r 214 ALACLNLLVTMGVRRENIWVYDL 236 (779)
Q Consensus 214 g~~~a~ll~~~g~~~~~i~~~D~ 236 (779)
|-++++.|.+.|. ++.++|+
T Consensus 15 G~aia~~la~~Ga---~V~i~d~ 34 (256)
T PRK08643 15 GFAIAKRLVEDGF---KVAIVDY 34 (256)
T ss_pred HHHHHHHHHHCCC---EEEEEEC
T ss_conf 9999999998799---9999969
No 455
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=57.15 E-value=13 Score=16.42 Aligned_cols=11 Identities=36% Similarity=0.166 Sum_probs=5.0
Q ss_pred CCCEEEEECCC
Q ss_conf 58479998178
Q gi|254780137|r 78 RSNLVAVVSNG 88 (779)
Q Consensus 78 ~~n~vaVvtdG 88 (779)
+|-.|.|++-+
T Consensus 34 ~G~~V~li~K~ 44 (591)
T PRK07057 34 AGLSVAVLSKV 44 (591)
T ss_pred CCCCEEEEECC
T ss_conf 69958999788
No 456
>PRK06123 short chain dehydrogenase; Provisional
Probab=57.10 E-value=11 Score=16.98 Aligned_cols=68 Identities=15% Similarity=0.183 Sum_probs=31.6
Q ss_pred CEEEEECCCCEECCCCCCCCCC--CCCH-H-----H---HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCE
Q ss_conf 4799981785002542205105--8300-1-----0---0899998626985265423889889999999870888460
Q gi|254780137|r 80 NLVAVVSNGSAVLGLGDIGPLA--SKPV-M-----E---GKAVLFKKFAGINVFDIEINAKDVDTMVSTIVALEPTFGG 147 (779)
Q Consensus 80 n~vaVvtdGt~vLGLGdiG~~a--~~pv-m-----e---GK~~L~k~~agid~~~i~~~~~d~~e~i~~v~~~~p~fg~ 147 (779)
|-|++||-|++=+|..=--.++ |--| + + -+..-...-.|..++.+..|..|.+++.+.+..+.-.||.
T Consensus 3 nKvalITGas~GIG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~ 81 (249)
T PRK06123 3 RKVMIITGASRGIGAATALLAAERGYAVCLNYLRNRDAAEAVVQAIRRQGGEALAVAADVADEADVLRLFEAVDRELGR 81 (249)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHCC
T ss_conf 9889996868799999999999879989998089878999999999964990999984799999999999999998299
No 457
>PRK05650 short chain dehydrogenase; Provisional
Probab=57.07 E-value=13 Score=16.41 Aligned_cols=109 Identities=13% Similarity=0.091 Sum_probs=60.6
Q ss_pred EEEEECCCHH-HHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHC-----------CCCCCH-------
Q ss_conf 1787425425-678999999819885758999559603078733266788977450-----------889888-------
Q gi|254780137|r 204 KIVTLGAGAA-ALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQK-----------SGPKPL------- 264 (779)
Q Consensus 204 ~iv~~GaGaA-g~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~-----------~~~~~l------- 264 (779)
||+|-||++. |-++++.+.+.|. +++++|++ .+.+.+........ ++...+
T Consensus 2 rVlITGassGIG~alA~~la~~G~---~V~l~~r~-------~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~~~~~~~~v 71 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREGW---RLALADVN-------EEGGEETLKELREAGGDGFYQRCDVRDYSQLTALAQAC 71 (270)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCC---EEEEEECC-------HHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHH
T ss_conf 799988764999999999998899---89999798-------89999999999844992899984589999999999999
Q ss_pred HHHCCCCCEEEECC---CCCCCC----HHHHHHCCCCCEEEEECCCCCCCCHHHHHHHCCCEEECCCC
Q ss_conf 88605883786257---887789----88997218997799917872009988998518987980588
Q gi|254780137|r 265 SETMNNADVFLGLS---VAGALD----PAILKFMAEKPLIMVLANPNPEAMPDEIKKVRPDAMICTGR 325 (779)
Q Consensus 265 ~ea~~~adv~iG~S---~~g~~t----~e~v~~M~~~PiIfaLsNP~pEi~p~~a~~~~g~aivatGr 325 (779)
.+...+.|+|+-.. .+|.|. +++-+.|.-+ +|.+-+.+....|...+...| .|+-.++
T Consensus 72 ~~~~g~iDiLVNNAGi~~~g~~~~~~~e~~~~~~~vN--l~g~~~~~~~~lp~m~~~~~G-~IvnisS 136 (270)
T PRK05650 72 EEKWGGIDVIVNNAGVASGGFFEELSLEDWDWQIAIN--LMGVVKGCKAFLPLFKEQGKG-RIVNIAS 136 (270)
T ss_pred HHHHCCCCEEEECCCCCCCCCHHHCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHCCCC-EEEEECC
T ss_conf 9983997789624766799862019999999999996--599999999999767556995-8999858
No 458
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=57.05 E-value=13 Score=16.41 Aligned_cols=33 Identities=18% Similarity=0.335 Sum_probs=28.5
Q ss_pred HCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf 411787425425678999999819885758999559
Q gi|254780137|r 202 DIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLE 237 (779)
Q Consensus 202 ~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~ 237 (779)
-.++-+.|||.=|-|||..+...|. .+++.|.+
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~---~V~l~D~~ 35 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGY---DVVLKDIS 35 (307)
T ss_pred CCEEEEECCCCHHHHHHHHHHHCCC---CEEEEECC
T ss_conf 4079997246020999999973499---56999589
No 459
>PRK07048 serine/threonine dehydratase; Validated
Probab=56.87 E-value=13 Score=16.39 Aligned_cols=89 Identities=11% Similarity=0.096 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHHCCCCCEEEHHHCCCCHHHHHHHHHHHHHCCCCC--CCCCCCHHHHHHHHHHHHHHHHCCCHHHCEEEE
Q ss_conf 889999999870888460622206480157999999987189421--687721899999999999997098822411787
Q gi|254780137|r 130 DVDTMVSTIVALEPTFGGINLEDIKAPECFEVERILSQKLKIPFL--HDDQHGTAVTVTAATLNGMKLVGKKFSDIKIVT 207 (779)
Q Consensus 130 d~~e~i~~v~~~~p~fg~i~lEDi~~p~~f~i~~~l~~~~~ipvf--~DD~qGTa~v~lA~llnAl~~~gk~l~~~~iv~ 207 (779)
.-|++.++-+.+.|-.+---| .-.++|.+.++..+| .++.|=|+..=.=|.+|++.-..+......||.
T Consensus 7 t~~di~~A~~~i~~~v~~TPl---------~~~~~ls~~~g~~v~lK~E~~qptGSFK~RGa~~~l~~l~~~~~~~gvV~ 77 (321)
T PRK07048 7 TYDDVAAAAARLAGVAHRTPV---------LTSRTADARTGAQVFFKCENFQRMGAFKFRGAYNALSQFSAEQRRAGVVT 77 (321)
T ss_pred CHHHHHHHHHHHHCCCCCCCE---------EECHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHCCHHHCCCCEEE
T ss_conf 999999999987462878975---------00066779859979998325898788789999999996017745684799
Q ss_pred ECCCHHHHHHHHHHHHCCCC
Q ss_conf 42542567899999981988
Q gi|254780137|r 208 LGAGAAALACLNLLVTMGVR 227 (779)
Q Consensus 208 ~GaGaAg~~~a~ll~~~g~~ 227 (779)
.-+|-.|.++|-.-..+|.+
T Consensus 78 aSsGN~g~avA~aa~~~G~~ 97 (321)
T PRK07048 78 FSSGNHAQAIALAARLLGIP 97 (321)
T ss_pred ECCCCHHHHHHHHHHHHCCC
T ss_conf 67873799999999870998
No 460
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=56.86 E-value=13 Score=16.39 Aligned_cols=39 Identities=31% Similarity=0.420 Sum_probs=31.7
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCC---CCCEEEEECCCEEEC
Q ss_conf 178742542567899999981988---575899955960307
Q gi|254780137|r 204 KIVTLGAGAAALACLNLLVTMGVR---RENIWVYDLEGLVYE 242 (779)
Q Consensus 204 ~iv~~GaGaAg~~~a~ll~~~g~~---~~~i~~~D~~Gli~~ 242 (779)
||.+.|||+=|+-+.+.|.-+|+. ..+|.++|-+-+-..
T Consensus 1 kvlvVGAGgIGCEllKnlal~G~~~~~~G~i~v~D~D~Ie~S 42 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKS 42 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCEECC
T ss_conf 989993776418999999983878689880899708847335
No 461
>TIGR01166 cbiO cobalt ABC transporter, ATP-binding protein; InterPro: IPR005876 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. This superfamily includes two groups, one which catalyses the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drives both the process of uptake and efflux.; GO: 0006824 cobalt ion transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=56.76 E-value=6.3 Score=18.52 Aligned_cols=61 Identities=30% Similarity=0.487 Sum_probs=40.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHCCC----------CEEEEECC--------------CCCHHHHH-HHHHHHCCCCCEEEH-
Q ss_conf 05105830010089999862698----------52654238--------------89889999-999870888460622-
Q gi|254780137|r 97 IGPLASKPVMEGKAVLFKKFAGI----------NVFDIEIN--------------AKDVDTMV-STIVALEPTFGGINL- 150 (779)
Q Consensus 97 iG~~a~~pvmeGK~~L~k~~agi----------d~~~i~~~--------------~~d~~e~i-~~v~~~~p~fg~i~l- 150 (779)
+||||+ ||+-||+.|.|+ |--|+--+ -+|||.=+ .+--.-=-+||..||
T Consensus 24 lG~NGa-----GKsTLl~~LnG~LrP~~G~v~~dG~~l~YsrkgL~~~R~~V~~VfQdPDDQlF~a~V~~DVaFGPlNLG 98 (190)
T TIGR01166 24 LGANGA-----GKSTLLLHLNGLLRPQSGKVLLDGEPLDYSRKGLLEVRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLG 98 (190)
T ss_pred ECCCCC-----CHHHHHHHHCCCCCCCCCEEEECCEECCCCCHHHHHHCCEEEEEEECHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 728998-----578998874367779755587678540357244675250300376263442026762210033545673
Q ss_pred --HHCCCCHHHHHHHHHHHHH
Q ss_conf --2064801579999999871
Q gi|254780137|r 151 --EDIKAPECFEVERILSQKL 169 (779)
Q Consensus 151 --EDi~~p~~f~i~~~l~~~~ 169 (779)
|| |+++|-+|-|
T Consensus 99 L~e~-------Ev~~RV~eAL 112 (190)
T TIGR01166 99 LSEA-------EVERRVREAL 112 (190)
T ss_pred CCHH-------HHHHHHHHHH
T ss_conf 3715-------7678789999
No 462
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=56.75 E-value=13 Score=16.38 Aligned_cols=32 Identities=13% Similarity=0.323 Sum_probs=27.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf 11787425425678999999819885758999559
Q gi|254780137|r 203 IKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLE 237 (779)
Q Consensus 203 ~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~ 237 (779)
.+|.+.|||.=|.|++-++...|. +++++|..
T Consensus 8 k~VaVIGaG~MG~giAa~~a~~G~---~V~l~D~~ 39 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGL---DVVAWDPA 39 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC---EEEEEECC
T ss_conf 879998887888999999994798---59999698
No 463
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=56.57 E-value=13 Score=16.36 Aligned_cols=43 Identities=19% Similarity=0.245 Sum_probs=24.3
Q ss_pred HHHHHHHCCCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEEC
Q ss_conf 99999709882241178742542567899999981988575899955
Q gi|254780137|r 190 LNGMKLVGKKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDL 236 (779)
Q Consensus 190 lnAl~~~gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~ 236 (779)
+++++-.+-+.. .+++++|+|.-|...+.+...+|. +++.+|.
T Consensus 156 ~~a~~~~~v~~g-~~V~V~G~G~iGl~a~~~ak~~Ga---~Vi~vd~ 198 (349)
T TIGR03201 156 YQAAVQAGLKKG-DLVIVIGAGGVGGYMVQTAKAMGA---AVVAIDI 198 (349)
T ss_pred HHHHHHCCCCCC-CEEEEECCCHHHHHHHHHHHHCCC---EEEEEEC
T ss_conf 535631178999-889998974899999999998599---7999949
No 464
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase; InterPro: IPR010110 This entry represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.; GO: 0004764 shikimate 5-dehydrogenase activity, 0005737 cytoplasm.
Probab=56.52 E-value=13 Score=16.35 Aligned_cols=122 Identities=19% Similarity=0.283 Sum_probs=75.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCC---CH-HHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCC
Q ss_conf 1687721899999999999997098---82-2411787425425678999999819885758999559603078733266
Q gi|254780137|r 174 LHDDQHGTAVTVTAATLNGMKLVGK---KF-SDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFD 249 (779)
Q Consensus 174 f~DD~qGTa~v~lA~llnAl~~~gk---~l-~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~ 249 (779)
=|-|+|| +.+||+-.|+ -. +..+=.+.|||-+.-|-.--|.++|++ .|+++.| + ++.++
T Consensus 106 dNTD~~G--------i~~Al~n~g~~E~~~Ge~~~glviGaGGtsrAA~yaL~sLG~~--~I~~inR----~---~dKl~ 168 (291)
T TIGR01809 106 DNTDWDG--------IAKALANIGKFEKLAGENFAGLVIGAGGTSRAAVYALASLGVK--DIYVINR----S---KDKLK 168 (291)
T ss_pred CCCCHHH--------HHHHHHHCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCC--EEEEEEC----C---HHHHH
T ss_conf 4783889--------9999985588654335541058883872148999999866997--0699735----8---66766
Q ss_pred HHHHHHHHCCCC---CC---HHHHCCCCCEEEECCC-C--CCCCHHHHHHCC---------C-CCEEEEE---CCCCCCC
Q ss_conf 788977450889---88---8886058837862578-8--778988997218---------9-9779991---7872009
Q gi|254780137|r 250 KWKSVYAQKSGP---KP---LSETMNNADVFLGLSV-A--GALDPAILKFMA---------E-KPLIMVL---ANPNPEA 307 (779)
Q Consensus 250 ~~~~~~a~~~~~---~~---l~ea~~~adv~iG~S~-~--g~~t~e~v~~M~---------~-~PiIfaL---sNP~pEi 307 (779)
+--..+..+... .. -.+.++--++=+++|. | .....+++.... . .|+.+-+ +||||=+
T Consensus 169 ~L~~~~~~~~~i~~~e~l~~~~~~i~v~~~~v~vStvPaD~p~d~~~l~~~~~fl~~~~~~~f~~~lLdaaY~p~~Tpl~ 248 (291)
T TIGR01809 169 KLVDLLVSEFVIIRLESLDKELEEIEVKDVEVAVSTVPADKPLDDEVLEALKRFLLKKAKAAFVGILLDAAYDPSVTPLV 248 (291)
T ss_pred HHHHHHCCCCEEEEEECCCCCCCCCEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCEE
T ss_conf 88774135613566510133411020245678886157886468889999989875133001101255431488986102
Q ss_pred CHHHH
Q ss_conf 98899
Q gi|254780137|r 308 MPDEI 312 (779)
Q Consensus 308 ~p~~a 312 (779)
.--.+
T Consensus 249 ~i~~a 253 (291)
T TIGR01809 249 IIAKA 253 (291)
T ss_pred EEEEH
T ss_conf 23301
No 465
>PRK05872 short chain dehydrogenase; Provisional
Probab=56.43 E-value=13 Score=16.34 Aligned_cols=37 Identities=19% Similarity=0.235 Sum_probs=29.0
Q ss_pred CCHHHCEEEEECCCHH-HHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf 8822411787425425-678999999819885758999559
Q gi|254780137|r 198 KKFSDIKIVTLGAGAA-ALACLNLLVTMGVRRENIWVYDLE 237 (779)
Q Consensus 198 k~l~~~~iv~~GaGaA-g~~~a~ll~~~g~~~~~i~~~D~~ 237 (779)
.+|+...++|-||++. |-++++.|...|. ++.++|++
T Consensus 5 ~~L~gKvalITGassGIG~aiA~~la~~Ga---~Vvl~dr~ 42 (296)
T PRK05872 5 TSLDGKVVFVTGAARGVGAELARRLHARGA---KVALVDLE 42 (296)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEECC
T ss_conf 885998799927105899999999998799---89999899
No 466
>PRK07124 consensus
Probab=56.08 E-value=13 Score=16.31 Aligned_cols=42 Identities=19% Similarity=0.181 Sum_probs=30.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCC
Q ss_conf 736889898899999999999999818997299997025578
Q gi|254780137|r 615 THVSAEPSAMEIADSTILASQAICSLGMRPKVSVLFHSNSGS 656 (779)
Q Consensus 615 taVNi~PtaEqLAdIa~~aa~~ar~lGiePkVAlLS~SnfGs 656 (779)
|+-|-.|-.+==+-+.+.+-+.++.+|++|..=++++..-|.
T Consensus 243 Ta~nss~~sDGAAavvl~s~~~a~~~g~~p~a~i~~~~~~g~ 284 (402)
T PRK07124 243 TAGNASGINDGASAIIIASESAVKKYGLTPLAEIVSYAQSGL 284 (402)
T ss_pred ECCCCCCCCCCHHHHHHHCHHHHHHCCCCCEEEEEEEEEEEE
T ss_conf 068876556643677773699999879982699952467873
No 467
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=55.89 E-value=13 Score=16.29 Aligned_cols=95 Identities=19% Similarity=0.212 Sum_probs=57.7
Q ss_pred HHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEE------------ECCCEEECC----CCCCCCHHHHHHHHCCCCCC
Q ss_conf 22411787425425678999999819885758999------------559603078----73326678897745088988
Q gi|254780137|r 200 FSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVY------------DLEGLVYEG----REKKFDKWKSVYAQKSGPKP 263 (779)
Q Consensus 200 l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~------------D~~Gli~~~----r~~~~~~~~~~~a~~~~~~~ 263 (779)
....||.+.|.|-+|--+.+.+...++..=.++.+ |++-++-.. -.-.-+|..-..+.+.....
T Consensus 9 ~~~~~I~VIGvGg~G~n~v~~m~~~~~~gve~ia~nTD~q~L~~~~a~~ki~iG~~~t~GlGaGa~P~vG~~aAee~~~~ 88 (338)
T COG0206 9 SLKARIKVIGVGGAGGNAVNRMIEEGVEGVEFIAINTDAQALKSSKADRKILIGESITRGLGAGANPEVGRAAAEESIEE 88 (338)
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHCCEEEEEEECCHHHHHCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 14846999986885369999999841075479996067899844666718996131311367788826879999998999
Q ss_pred HHHHCCCCC-EEEECC-CCCCCC--HHHHHHCCCC
Q ss_conf 888605883-786257-887789--8899721899
Q gi|254780137|r 264 LSETMNNAD-VFLGLS-VAGALD--PAILKFMAEK 294 (779)
Q Consensus 264 l~ea~~~ad-v~iG~S-~~g~~t--~e~v~~M~~~ 294 (779)
+.++++++| +|+-.. ++|.=| -.+|..-+++
T Consensus 89 I~~~l~g~dmvfitaG~GGGTGtGaaPVvakiake 123 (338)
T COG0206 89 IEEALKGADMVFVTAGMGGGTGTGAAPVVAEIAKE 123 (338)
T ss_pred HHHHHCCCCEEEEEEEECCCCCCCCCHHHHHHHHH
T ss_conf 99984668759999620677666505899999877
No 468
>PRK08703 short chain dehydrogenase; Provisional
Probab=55.79 E-value=13 Score=16.27 Aligned_cols=35 Identities=17% Similarity=0.228 Sum_probs=25.6
Q ss_pred CHHHCEEEEECCCHH-HHHHHHHHHHCCCCCCCEEEEEC
Q ss_conf 822411787425425-67899999981988575899955
Q gi|254780137|r 199 KFSDIKIVTLGAGAA-ALACLNLLVTMGVRRENIWVYDL 236 (779)
Q Consensus 199 ~l~~~~iv~~GaGaA-g~~~a~ll~~~g~~~~~i~~~D~ 236 (779)
.|+..+++|.||++. |-++++.|...|. +++++++
T Consensus 3 ~L~gK~~lITGas~GIG~aiA~~la~~Ga---~V~l~~r 38 (239)
T PRK08703 3 TLSDKTILVTGASQGLGEQVAKAYAAAGA---TVILVAR 38 (239)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEEC
T ss_conf 85969899948862899999999998799---8999979
No 469
>COG0565 LasT rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=55.70 E-value=13 Score=16.27 Aligned_cols=69 Identities=13% Similarity=0.273 Sum_probs=48.1
Q ss_pred HHCEEEEECC-CHHHHH-HHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCCC--------CCCHHHHCCC
Q ss_conf 2411787425-425678-99999981988575899955960307873326678897745088--------9888886058
Q gi|254780137|r 201 SDIKIVTLGA-GAAALA-CLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKSG--------PKPLSETMNN 270 (779)
Q Consensus 201 ~~~~iv~~Ga-GaAg~~-~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~~--------~~~l~ea~~~ 270 (779)
..++||.... ++..|| +|+.+..+|.. ++++|+-+ .. +++....+|..-. ..+|.|++.+
T Consensus 3 ~~i~iVLVep~~~gNIG~vARaMKNfGl~--eL~LV~Pr-------~~-~~eeA~a~A~gA~dile~A~i~~tL~eAl~d 72 (242)
T COG0565 3 ENIRIVLVEPSHPGNIGSVARAMKNFGLS--ELRLVNPR-------AG-LDEEARALAAGARDILENAKIVDTLEEALAD 72 (242)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHCCCC--EEEEECCC-------CC-CCHHHHHHHCCCHHHHCCCEEECCHHHHHCC
T ss_conf 76179997588875279999999867966--48997898-------89-8899999864666665067664679999607
Q ss_pred CCEEEECCC
Q ss_conf 837862578
Q gi|254780137|r 271 ADVFLGLSV 279 (779)
Q Consensus 271 adv~iG~S~ 279 (779)
.+..+|+|+
T Consensus 73 ~~~v~aTta 81 (242)
T COG0565 73 CDLVVATTA 81 (242)
T ss_pred CCEEEEECC
T ss_conf 887998056
No 470
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=55.64 E-value=11 Score=16.89 Aligned_cols=30 Identities=23% Similarity=0.275 Sum_probs=20.1
Q ss_pred EEEEECCCHH-HHHHHHHHHHCCCCCCCEEEEEC
Q ss_conf 1787425425-67899999981988575899955
Q gi|254780137|r 204 KIVTLGAGAA-ALACLNLLVTMGVRRENIWVYDL 236 (779)
Q Consensus 204 ~iv~~GaGaA-g~~~a~ll~~~g~~~~~i~~~D~ 236 (779)
.+++.|+++. |-+|++.|.+.|. ++.++|+
T Consensus 4 valITG~s~GIG~aia~~la~~Ga---~V~i~~~ 34 (259)
T PRK12384 4 VAVVIGGGQTLGAFLCHGLAEEGY---RVAVADI 34 (259)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCC---EEEEEEC
T ss_conf 899946886899999999998799---9999979
No 471
>PRK06720 hypothetical protein; Provisional
Probab=55.56 E-value=13 Score=16.25 Aligned_cols=37 Identities=22% Similarity=0.297 Sum_probs=28.4
Q ss_pred CCCHHHCEEEEECCCHH-HHHHHHHHHHCCCCCCCEEEEEC
Q ss_conf 98822411787425425-67899999981988575899955
Q gi|254780137|r 197 GKKFSDIKIVTLGAGAA-ALACLNLLVTMGVRRENIWVYDL 236 (779)
Q Consensus 197 gk~l~~~~iv~~GaGaA-g~~~a~ll~~~g~~~~~i~~~D~ 236 (779)
..+|+...+++-|+++. |-+++..|.+.|. +++++|+
T Consensus 11 ~~~L~gKvalITGa~~GIG~a~A~~la~~Ga---~Vvi~d~ 48 (169)
T PRK06720 11 KMKLAGKVAIVTGGGIGIGRNTALLLAKQGA---KVIVTDI 48 (169)
T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEECC
T ss_conf 6862999999989754899999999998699---8999527
No 472
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=55.39 E-value=13 Score=16.23 Aligned_cols=35 Identities=17% Similarity=0.299 Sum_probs=24.4
Q ss_pred CHHHCEEEEECCCHH-HHHHHHHHHHCCCCCCCEEEEEC
Q ss_conf 822411787425425-67899999981988575899955
Q gi|254780137|r 199 KFSDIKIVTLGAGAA-ALACLNLLVTMGVRRENIWVYDL 236 (779)
Q Consensus 199 ~l~~~~iv~~GaGaA-g~~~a~ll~~~g~~~~~i~~~D~ 236 (779)
+|+...+++.|+++. |-++++.+.+.|. +++++|+
T Consensus 2 ~L~gKvalITGgs~GIG~aia~~~a~~Ga---~V~i~~r 37 (262)
T TIGR03325 2 RLKGEVVLVTGGASGLGRAIVDRFVAEGA---RVAVLDK 37 (262)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEEC
T ss_conf 98998899906787899999999998799---9999989
No 473
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=54.93 E-value=14 Score=16.18 Aligned_cols=36 Identities=11% Similarity=0.229 Sum_probs=26.5
Q ss_pred CHHHCEEEEECC-CHHHHH--HHHHHHHCCCCCCCEEEEECC
Q ss_conf 822411787425-425678--999999819885758999559
Q gi|254780137|r 199 KFSDIKIVTLGA-GAAALA--CLNLLVTMGVRRENIWVYDLE 237 (779)
Q Consensus 199 ~l~~~~iv~~Ga-GaAg~~--~a~ll~~~g~~~~~i~~~D~~ 237 (779)
.|+.-++++.|+ |+.||| +++.+...|. +++++|++
T Consensus 4 ~L~GK~~lVTG~~~~~GIG~a~A~~la~~GA---~Vvi~~~~ 42 (256)
T PRK07889 4 LLEGKRILVTGVITDSSIAFHIARVAQEQGA---EVVLTGFR 42 (256)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHCCC---EEEEEECC
T ss_conf 1499979998998856899999999998799---99998389
No 474
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=54.82 E-value=14 Score=16.17 Aligned_cols=147 Identities=16% Similarity=0.180 Sum_probs=83.4
Q ss_pred HHHHHHHCCCCCCC---CCCCHHHHHHHHHHHHHHHHCCCHHHCEEEEECCCHHH-HHHHHHHHHCCCCCCCEEEEECCC
Q ss_conf 99998718942168---77218999999999999970988224117874254256-789999998198857589995596
Q gi|254780137|r 163 RILSQKLKIPFLHD---DQHGTAVTVTAATLNGMKLVGKKFSDIKIVTLGAGAAA-LACLNLLVTMGVRRENIWVYDLEG 238 (779)
Q Consensus 163 ~~l~~~~~ipvf~D---D~qGTa~v~lA~llnAl~~~gk~l~~~~iv~~GaGaAg-~~~a~ll~~~g~~~~~i~~~D~~G 238 (779)
+++.+..++||.|- ..|=|=+ |+-++.-.+. ..+++..+|.+.|-++-= -.-..++..+|+ ++.++--++
T Consensus 114 ~~~a~~~~vPVINa~~d~~HPtQa--L~Dl~Ti~e~-~g~l~gl~i~~vGD~~nV~~Sl~~~~~~~g~---~v~~~~P~~ 187 (308)
T PRK00779 114 EELAEYSTVPVINGLTDLSHPCQI--LADLLTIYEH-RGSIKGKTVAWVGDGNNVANSLLLAAALLGF---DLRVATPKG 187 (308)
T ss_pred HHHHHHCCCCEEECCCCCCCCHHH--HHHHHHHHHH-HCCCCCCEEEEECCCCCHHHHHHHHHHHCCC---EEEEECCCC
T ss_conf 999874898789678887673899--9999999998-3867787599983874539999999997799---899988830
Q ss_pred EEECCCCCCCCHHHHHHHHCC------CCCCHHHHCCCCCEEEE---CCC--------------CCCCCHHHHHHCCCCC
Q ss_conf 030787332667889774508------89888886058837862---578--------------8778988997218997
Q gi|254780137|r 239 LVYEGREKKFDKWKSVYAQKS------GPKPLSETMNNADVFLG---LSV--------------AGALDPAILKFMAEKP 295 (779)
Q Consensus 239 li~~~r~~~~~~~~~~~a~~~------~~~~l~ea~~~adv~iG---~S~--------------~g~~t~e~v~~M~~~P 295 (779)
+.- ++....+++.. -..++.|+++++||+.- .|- +=.+|++.++.+.++.
T Consensus 188 ~~~-------~~~~~~~~~~~~~~~i~~~~d~~ea~~~aDviytd~w~sm~~~~~~~~~~~~~~~y~vt~~~l~~ak~~~ 260 (308)
T PRK00779 188 YEP-------DPEIVAKARAIAEASIEVTHDPEEAVKGADVVYTDVWVSMGQEAEAEERLKAFAPYQVNAELMALAKPDA 260 (308)
T ss_pred CCC-------CHHHHHHHHHHCCCCEEEECCHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCC
T ss_conf 278-------9999999997468958998399999625999985041025537899999987653565899997269998
Q ss_pred EEEEECCCCC-----CCCHHHHHHHCCCEEECCCCCCCCCCCCH
Q ss_conf 7999178720-----09988998518987980588788774350
Q gi|254780137|r 296 LIMVLANPNP-----EAMPDEIKKVRPDAMICTGRSDFSNQVNN 334 (779)
Q Consensus 296 iIfaLsNP~p-----Ei~p~~a~~~~g~aivatGrs~~pnQ~NN 334 (779)
||+ -|-| ||+.+... . =||-+-.|+.|
T Consensus 261 ivM---HplP~~Rg~EI~~~V~d--~-------p~s~i~~Qa~N 292 (308)
T PRK00779 261 IFM---HCLPAHRGEEVTDEVID--G-------PQSVVWDEAEN 292 (308)
T ss_pred EEE---CCCCCCCCCEECHHHHC--C-------CCCHHHHHHHC
T ss_conf 997---98988888636676756--9-------86569999860
No 475
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=54.78 E-value=14 Score=16.17 Aligned_cols=11 Identities=9% Similarity=0.111 Sum_probs=5.5
Q ss_pred CCCEEEEECCC
Q ss_conf 58479998178
Q gi|254780137|r 78 RSNLVAVVSNG 88 (779)
Q Consensus 78 ~~n~vaVvtdG 88 (779)
.|-.|.||.-+
T Consensus 26 ~Ga~V~llEK~ 36 (456)
T PRK08274 26 AGASVLLLEAA 36 (456)
T ss_pred CCCEEEEEEEE
T ss_conf 79909999832
No 476
>PRK06199 ornithine cyclodeaminase; Validated
Probab=54.77 E-value=14 Score=16.17 Aligned_cols=203 Identities=13% Similarity=0.145 Sum_probs=100.1
Q ss_pred HHHHHCCCHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCC----C---CCCH
Q ss_conf 99970988224117874254256789999998198857589995596030787332667889774508----8---9888
Q gi|254780137|r 192 GMKLVGKKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKS----G---PKPL 264 (779)
Q Consensus 192 Al~~~gk~l~~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~----~---~~~l 264 (779)
|.|...++ ...++.++|+|.=+-...+.+....-.-+++.+.|+ + .+..+.+..++...- + ..+.
T Consensus 146 Aak~LAr~-da~~lgiIG~G~qAr~~l~Al~~vrp~i~~V~V~~r----~---~~~a~~fa~~~~~~~~~~~~v~~~~s~ 217 (379)
T PRK06199 146 GAKHLARK-DAKVVGLVGPGVMGKTIVAAFMAVCPGIDTIKIKGR----S---QKSLDAFATWVAETYPQITEVVVVDSE 217 (379)
T ss_pred HHHHHCCC-CCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECC----C---HHHHHHHHHHHHHHCCCCCEEEEECCH
T ss_conf 99985558-997899989639999999999986178888999889----9---999999999999766888508982999
Q ss_pred HHHCCCCCEEEECCC--C------CCCCHHHHHHCCCCCEEEEECCCCC-CCCHHHHHHHCCCEEECCCC-------CCC
Q ss_conf 886058837862578--8------7789889972189977999178720-09988998518987980588-------788
Q gi|254780137|r 265 SETMNNADVFLGLSV--A------GALDPAILKFMAEKPLIMVLANPNP-EAMPDEIKKVRPDAMICTGR-------SDF 328 (779)
Q Consensus 265 ~ea~~~adv~iG~S~--~------g~~t~e~v~~M~~~PiIfaLsNP~p-Ei~p~~a~~~~g~aivatGr-------s~~ 328 (779)
+|++.++||++.++. . -+|..+|++ +.--|. +|-. |+.++.. .....++..-+ ..+
T Consensus 218 eeav~~aDIVvtaTs~~~~~ps~~P~~~~~wlk---pGahv~---~~g~~~~d~~~~--~~~~~~vvD~~~~~~a~~~e~ 289 (379)
T PRK06199 218 EEVVRGSDIVTYCTSGEAGDPSAYPYVKREWVK---PGAFLL---MPAACRLDDGME--QDDARKVVDNTGLYEAWFEEV 289 (379)
T ss_pred HHHHHCCCEEEECCCCCCCCCCCCCEECHHHCC---CCCEEE---CCCCCCCCHHHC--CCCCEEEEECCHHHHHHHHHH
T ss_conf 999737999997777887777778474599959---998894---556776785560--557659982401567777652
Q ss_pred CCCCCHHHHHHHH-HHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCC-CCCCCCCCCHHHH-HH
Q ss_conf 7743503455665-4567513730026789999999999872033136677413876766675-2236665467786-79
Q gi|254780137|r 329 SNQVNNVLCFPYI-FRGALDCGATAITEEMKVAAARAMAVLVRDVPPDVVFDNFAKESPVFGP-NYLIPSPFDPNLI-SY 405 (779)
Q Consensus 329 pnQ~NN~l~FPgi-f~Gal~~~A~~Itd~M~~aAa~alA~la~~~~~~~~~~~~~~~~~~~g~-~yiiP~~fd~r~~-~~ 405 (779)
+-+.+..+.-||. |..+ ...-.++.+... .|.+++.-..|. +... +-++=+++---+- ..
T Consensus 290 ~~~~~~~~~~~g~~~~~~--i~~G~l~~~~v~----eLGdvv~G~~~G-----------R~~~deitvF~s~G~avqDlA 352 (379)
T PRK06199 290 PKPAHNLLGIPGVRFMDM--IAEGKLPLDKLE----DIGDIVSGKAPG-----------RTNDEEIIIYSVGGMPVEDVA 352 (379)
T ss_pred HHHHHHHCCCCCHHHHHH--HHCCCCCHHHCC----CHHHHHCCCCCC-----------CCCCCCEEEEECCCCHHHHHH
T ss_conf 024543215444147889--875998724206----499996799888-----------799987799959885999999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCHH
Q ss_conf 88889998742132235432258
Q gi|254780137|r 406 IAPAVAKAAEEAGVASSPIEDYE 428 (779)
Q Consensus 406 va~AVa~aA~~sGvAr~pi~d~~ 428 (779)
+|..|-+.|.+.|+-++ ++-||
T Consensus 353 ~A~~vy~~A~~~GiGt~-l~L~~ 374 (379)
T PRK06199 353 WATQVYENALEKGIGVK-LNLWD 374 (379)
T ss_pred HHHHHHHHHHHCCCCEE-EEECC
T ss_conf 99999999997699728-86034
No 477
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=54.71 E-value=14 Score=16.16 Aligned_cols=99 Identities=23% Similarity=0.365 Sum_probs=52.7
Q ss_pred HCEEEEECCCHHHH-HHHHHH---HHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCCCCC---CHHHH-CCCCCE
Q ss_conf 41178742542567-899999---98198857589995596030787332667889774508898---88886-058837
Q gi|254780137|r 202 DIKIVTLGAGAAAL-ACLNLL---VTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKSGPK---PLSET-MNNADV 273 (779)
Q Consensus 202 ~~~iv~~GaGaAg~-~~a~ll---~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~~~~---~l~ea-~~~adv 273 (779)
.-|++..|||+.|- |+.+-. -.+|...+++. |++--|... +... .+-+++.... .|... +..-|+
T Consensus 58 gGRL~YvGAGTSGRlgvlDa~E~~PTFg~~~~~v~-----~liAGG~~A-l~~~-~EgaED~~~~g~~dl~~~~~~~~Dv 130 (273)
T PRK05441 58 GGRLIYIGAGTSGRLGVLDASECPPTFGVPPELVV-----GLIAGGEKA-LTKA-VEGAEDDAELGAADLKAINLTAKDV 130 (273)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCCCCHHHHE-----EEEECCHHH-HHHC-HHCCCCCHHHHHHHHHHHCCCCCCE
T ss_conf 98299974761588999889864876689989914-----467688999-8636-1102468889999999828996578
Q ss_pred EEECCCCCCCCHHHHHHCC---C--CCEEEEECCCCCCCC
Q ss_conf 8625788778988997218---9--977999178720099
Q gi|254780137|r 274 FLGLSVAGALDPAILKFMA---E--KPLIMVLANPNPEAM 308 (779)
Q Consensus 274 ~iG~S~~g~~t~e~v~~M~---~--~PiIfaLsNP~pEi~ 308 (779)
+||+|..| -||-++..|. + -+.|.=-.||.+++.
T Consensus 131 vIgIaASG-~TPyv~~al~~A~~~ga~ti~I~~n~~s~l~ 169 (273)
T PRK05441 131 VVGIAASG-RTPYVIGALEYAREIGALTIAISCNPGSPIS 169 (273)
T ss_pred EEEEECCC-CCHHHHHHHHHHHHCCCCEEEEECCCCCCHH
T ss_conf 99993688-9718999999999869957998538962000
No 478
>PRK08264 short chain dehydrogenase; Validated
Probab=54.24 E-value=14 Score=16.11 Aligned_cols=34 Identities=15% Similarity=0.269 Sum_probs=24.5
Q ss_pred CHHHCEEEEECCCHH-HHHHHHHHHHCCCCCCCEEEE
Q ss_conf 822411787425425-678999999819885758999
Q gi|254780137|r 199 KFSDIKIVTLGAGAA-ALACLNLLVTMGVRRENIWVY 234 (779)
Q Consensus 199 ~l~~~~iv~~GaGaA-g~~~a~ll~~~g~~~~~i~~~ 234 (779)
+|++..+++.|+++. |-++++.|.+.|.. .++..
T Consensus 2 ~l~gK~alITGassGIG~aiA~~la~~Ga~--~V~~~ 36 (235)
T PRK08264 2 DIKGKVVLVTGANRGIGRAFVEELLARGAA--KVYAA 36 (235)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCC--EEEEE
T ss_conf 279988999267549999999999986997--79997
No 479
>PRK07024 short chain dehydrogenase; Provisional
Probab=53.86 E-value=14 Score=16.07 Aligned_cols=32 Identities=16% Similarity=0.188 Sum_probs=26.2
Q ss_pred CEEEEECCCHH-HHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf 11787425425-678999999819885758999559
Q gi|254780137|r 203 IKIVTLGAGAA-ALACLNLLVTMGVRRENIWVYDLE 237 (779)
Q Consensus 203 ~~iv~~GaGaA-g~~~a~ll~~~g~~~~~i~~~D~~ 237 (779)
+||+|.||.+. |-++++.+.+.|. ++++++++
T Consensus 3 ~~VlITGassGIG~a~A~~la~~G~---~v~l~~R~ 35 (256)
T PRK07024 3 LKVFITGASSGIGQALAREYARQGA---TLGLVARR 35 (256)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCC---EEEEEECC
T ss_conf 9899984602999999999998899---89999898
No 480
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=53.85 E-value=14 Score=16.07 Aligned_cols=35 Identities=20% Similarity=0.227 Sum_probs=26.5
Q ss_pred CHHHCEEEEECCCHH-HHHHHHHHHHCCCCCCCEEEEEC
Q ss_conf 822411787425425-67899999981988575899955
Q gi|254780137|r 199 KFSDIKIVTLGAGAA-ALACLNLLVTMGVRRENIWVYDL 236 (779)
Q Consensus 199 ~l~~~~iv~~GaGaA-g~~~a~ll~~~g~~~~~i~~~D~ 236 (779)
+|+...+++-|+++. |-+|++.|...|. +++++|+
T Consensus 7 ~L~gKvalVTGas~GIG~aia~~la~~Ga---~V~i~~~ 42 (278)
T PRK08277 7 SLKGKVAVITGGGGVLGGAMAKELARAGA---KVAILDR 42 (278)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEEC
T ss_conf 88999899958674899999999998799---8999979
No 481
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=53.67 E-value=14 Score=16.05 Aligned_cols=118 Identities=17% Similarity=0.194 Sum_probs=59.9
Q ss_pred CCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCE
Q ss_conf 13557773499974736889898899999999999999818997299997025578889778999999999987379959
Q gi|254780137|r 601 SMCIVRDNFLFFTDTHVSAEPSAMEIADSTILASQAICSLGMRPKVSVLFHSNSGSHCIKSSLKMRDSFEKICELSKNLE 680 (779)
Q Consensus 601 ~il~~~~~~lFiaDtaVNi~PtaEqLAdIa~~aa~~ar~lGiePkVAlLS~SnfGs~~~~s~~kvr~A~eil~~~~pd~~ 680 (779)
-.+-..+++.|+=|.-=. +| ..+....+.| ++|-++- -|..+..+-......+ . +-..+.
T Consensus 312 E~V~~~~gv~~iNDSKaT-N~---------~a~~~Al~~~---~~i~lI~---GG~~K~~d~~~l~~~~---~-~v~~~~ 371 (450)
T PRK01368 312 QYIGSINNISFYNDSKAT-NA---------ISAVQSIKAL---DNIYWLA---GGIPKEGGIEEIKPYF---S-KIKKAY 371 (450)
T ss_pred EEEEEECCEEEECCCCCC-CH---------HHHHHHHHCC---CCEEEEE---ECCCCCCCHHHHHHHH---H-CCCEEE
T ss_conf 899998999997178878-99---------9999998568---9739999---4157778879999887---4-387999
Q ss_pred EECCCCHHHHCCHHHHHHCCCCCCCCCCCCEEECCCHHHH-HHHHHHHHHHCCCEEECHHHCCCCCCEEECCCCCCHHHH
Q ss_conf 9867304653298989630899877777777881891288-899999998659868714431458987987876389889
Q gi|254780137|r 681 VDAIVQEEVCLSEIFCDKDVPNTSSSQDAQLLVFPNIDSA-NIALEMAKSVTNGLHIGTLLLGAALPVHIVPSSVSVREI 759 (779)
Q Consensus 681 VDGemq~D~AL~~~ia~~K~p~S~laG~ANVLIfPnLeAa-NI~yKllq~lgga~aiGPIL~G~~kPV~ilsr~~Sv~dI 759 (779)
+-|+-.. .+++ .+.+..++.++-+++.+ ..+++..+.-. .. | -+.++|++|+.-|.
T Consensus 372 l~G~~~~------~~~~------~~~~~~~~~~~~~l~~av~~a~~~a~~~~--~~-~--------~~VLlSPacaSfD~ 428 (450)
T PRK01368 372 FYGQAKE------MFAN------TAKNIVDFVICDNLEQAFDLAYKDAVGDN--AE-V--------KNILLAPSCSSYDQ 428 (450)
T ss_pred EECCCHH------HHHH------HCCCCCCEEECCCHHHHHHHHHHHHHCCC--CC-C--------CEEEECCCCCCCCC
T ss_conf 9897899------9998------60589876964999999999999975578--78-9--------97996860204013
Q ss_pred HH
Q ss_conf 99
Q gi|254780137|r 760 ID 761 (779)
Q Consensus 760 vn 761 (779)
..
T Consensus 429 f~ 430 (450)
T PRK01368 429 FK 430 (450)
T ss_pred CC
T ss_conf 17
No 482
>cd00751 thiolase Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and eukaryotes (cytosol, microbodies and mitochondria). There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways.
Probab=53.22 E-value=15 Score=16.00 Aligned_cols=49 Identities=18% Similarity=0.186 Sum_probs=36.8
Q ss_pred CEEEEEC---CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCC
Q ss_conf 3499974---736889898899999999999999818997299997025578
Q gi|254780137|r 608 NFLFFTD---THVSAEPSAMEIADSTILASQAICSLGMRPKVSVLFHSNSGS 656 (779)
Q Consensus 608 ~~lFiaD---taVNi~PtaEqLAdIa~~aa~~ar~lGiePkVAlLS~SnfGs 656 (779)
+++|-.| |+-|-.|..+==+-..+.+-+.++++|++|++-++++...+.
T Consensus 227 ~p~f~~~g~vTagn~s~~sDGAAAvvl~s~~~a~~~g~~p~a~i~~~~~~~~ 278 (386)
T cd00751 227 KPAFKKDGTVTAGNASGINDGAAAVLLMSEEKAKELGLKPLARIVGYAVAGV 278 (386)
T ss_pred CCCCCCCCCEECCCCCCCCCHHHHHHHHCHHHHHHCCCCEEEEEEEECCCCC
T ss_conf 7631479826777557666478999874699999769970699997412212
No 483
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=53.12 E-value=15 Score=15.99 Aligned_cols=11 Identities=27% Similarity=0.199 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q ss_conf 57999999987
Q gi|254780137|r 158 CFEVERILSQK 168 (779)
Q Consensus 158 ~f~i~~~l~~~ 168 (779)
-|+-++++|+.
T Consensus 64 PWeRLr~lk~~ 74 (472)
T COG5016 64 PWERLRELKKA 74 (472)
T ss_pred HHHHHHHHHHH
T ss_conf 89999999986
No 484
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=53.03 E-value=15 Score=15.98 Aligned_cols=96 Identities=10% Similarity=0.098 Sum_probs=56.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHCCCCCCHHHHCCCCCEEEECCCCCC
Q ss_conf 11787425425678999999819885758999559603078733266788977450889888886058837862578877
Q gi|254780137|r 203 IKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQKSGPKPLSETMNNADVFLGLSVAGA 282 (779)
Q Consensus 203 ~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~Gli~~~r~~~~~~~~~~~a~~~~~~~l~ea~~~adv~iG~S~~g~ 282 (779)
.||.|.|.|-=|..++.-+...|.. .+|+.+|++ .+.+...+..-..+.-..++.+++.++|+.+=+.-...
T Consensus 7 ~~I~IiGlGLIGgSlA~alk~~~~~-~~I~g~d~~-------~~~l~~A~~~g~id~~~~~~~e~~~~~DlIilatPv~~ 78 (307)
T PRK07502 7 DRVALIGLGLIGSSLARAIRRQGLA-GEIVGAARS-------AETRARARELGLGDRVTTSAAEAVKGADLVILCVPVGA 78 (307)
T ss_pred CEEEEEEECHHHHHHHHHHHHCCCC-CEEEEEECC-------HHHHHHHHHCCCCCHHCCCHHHHHCCCCEEEEECCHHH
T ss_conf 6689992787999999999854998-579998499-------99999999869975112777664045897999178999
Q ss_pred CCHHHHHHC----CCCCEEEEECCCCCCC
Q ss_conf 898899721----8997799917872009
Q gi|254780137|r 283 LDPAILKFM----AEKPLIMVLANPNPEA 307 (779)
Q Consensus 283 ~t~e~v~~M----~~~PiIfaLsNP~pEi 307 (779)
..++++.. .++-+|.=.+-=-..+
T Consensus 79 -~~~vl~~l~~~l~~~~ivTDvgSvK~~I 106 (307)
T PRK07502 79 -SGAVAAEIAPHLKPGAIVTDVGSVKASV 106 (307)
T ss_pred -HHHHHHHHHHHCCCCCEEEECCCCHHHH
T ss_conf -9999999985558996899663211899
No 485
>PRK05855 short chain dehydrogenase; Validated
Probab=52.97 E-value=15 Score=15.97 Aligned_cols=43 Identities=7% Similarity=0.044 Sum_probs=24.0
Q ss_pred CEEEEECCCCCHHHHHHHHHHHCCCE---EEEEECCHHHHHHHHHH
Q ss_conf 46998247740467999999852750---89995598999999998
Q gi|254780137|r 458 KRILFSAGEDERVLRATQILIKENIA---RPVLIGSLLTIQDNIRR 500 (779)
Q Consensus 458 KRIVfaEgeD~rVLrAA~~~~eeGia---~PILVG~~e~I~~~~~~ 500 (779)
-+|+++.=+.+..-+.+.++.+.|-. .+.=|.+++.+++.+++
T Consensus 340 A~Vvl~Dr~~~~l~eta~ei~~~G~~a~~~~~DVtd~~av~al~~~ 385 (582)
T PRK05855 340 AEVVASDIDEAAAERTAALIRAAGAVAHAYRVDVSDADAMEALAEW 385 (582)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 9999960799999999999995198489997558999999999999
No 486
>KOG2755 consensus
Probab=52.93 E-value=15 Score=15.99 Aligned_cols=32 Identities=22% Similarity=0.470 Sum_probs=24.7
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCCCEEEEEC
Q ss_conf 178742542567899999981988575899955
Q gi|254780137|r 204 KIVTLGAGAAALACLNLLVTMGVRRENIWVYDL 236 (779)
Q Consensus 204 ~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~ 236 (779)
++++.|.|-||+.||++|..+.-.. .|.++-.
T Consensus 1 kfivvgggiagvscaeqla~~~psa-~illita 32 (334)
T KOG2755 1 KFIVVGGGIAGVSCAEQLAQLEPSA-EILLITA 32 (334)
T ss_pred CEEEECCCCCCCCHHHHHHHHCCCC-CEEEEEC
T ss_conf 9599857614325899997538887-3899964
No 487
>PRK06841 short chain dehydrogenase; Provisional
Probab=52.86 E-value=15 Score=15.96 Aligned_cols=36 Identities=19% Similarity=0.255 Sum_probs=25.5
Q ss_pred CHHHCEEEEECCCHH-HHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf 822411787425425-678999999819885758999559
Q gi|254780137|r 199 KFSDIKIVTLGAGAA-ALACLNLLVTMGVRRENIWVYDLE 237 (779)
Q Consensus 199 ~l~~~~iv~~GaGaA-g~~~a~ll~~~g~~~~~i~~~D~~ 237 (779)
+|+...+++-|+++. |-+|++.|...|. +++++|++
T Consensus 12 ~l~gKvalVTGas~GIG~aiA~~la~~Ga---~V~i~d~~ 48 (255)
T PRK06841 12 DLSGKVAVVTGGASGIGHAIAELFAAKGA---RVALLDRS 48 (255)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEECC
T ss_conf 89999999979677899999999998799---99999698
No 488
>PRK05876 short chain dehydrogenase; Provisional
Probab=52.82 E-value=15 Score=15.96 Aligned_cols=37 Identities=19% Similarity=0.251 Sum_probs=24.8
Q ss_pred CCHHHCEEEEECCCHH-HHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf 8822411787425425-678999999819885758999559
Q gi|254780137|r 198 KKFSDIKIVTLGAGAA-ALACLNLLVTMGVRRENIWVYDLE 237 (779)
Q Consensus 198 k~l~~~~iv~~GaGaA-g~~~a~ll~~~g~~~~~i~~~D~~ 237 (779)
++++...++|-|+++. |.++++.|...|. ++.++|++
T Consensus 2 ~~~~gKvavITGaasGIG~a~A~~la~~Ga---~Vvi~d~~ 39 (275)
T PRK05876 2 DGFPGRGAVITGGASGIGLATGTEFARRGA---RVVLGDVD 39 (275)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEECC
T ss_conf 598998799928266999999999998799---89999798
No 489
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=52.63 E-value=15 Score=15.94 Aligned_cols=34 Identities=24% Similarity=0.384 Sum_probs=20.0
Q ss_pred HHHCEEEEECC-CHHHHH--HHHHHHHCCCCCCCEEEEEC
Q ss_conf 22411787425-425678--99999981988575899955
Q gi|254780137|r 200 FSDIKIVTLGA-GAAALA--CLNLLVTMGVRRENIWVYDL 236 (779)
Q Consensus 200 l~~~~iv~~Ga-GaAg~~--~a~ll~~~g~~~~~i~~~D~ 236 (779)
|+.-++++.|| |+.||| |++.|.+.|. ++.+.++
T Consensus 5 L~gK~~lVTGaag~~GIG~a~A~~la~~Ga---~Vv~~~~ 41 (252)
T PRK06079 5 LSGKKIVVMGVANKRSIAWGCAQAIKDQGA---TVIYTYQ 41 (252)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCC---EEEEEEC
T ss_conf 399889998999987799999999998699---9999848
No 490
>PRK08945 short chain dehydrogenase; Provisional
Probab=52.50 E-value=15 Score=15.92 Aligned_cols=34 Identities=18% Similarity=0.224 Sum_probs=23.5
Q ss_pred HHHCEEEEECCCHH-HHHHHHHHHHCCCCCCCEEEEEC
Q ss_conf 22411787425425-67899999981988575899955
Q gi|254780137|r 200 FSDIKIVTLGAGAA-ALACLNLLVTMGVRRENIWVYDL 236 (779)
Q Consensus 200 l~~~~iv~~GaGaA-g~~~a~ll~~~g~~~~~i~~~D~ 236 (779)
|++-.+++.||++. |-++++.|...|. +++++++
T Consensus 11 L~gK~~lITGas~GIG~aiA~~la~~Ga---~Vil~~r 45 (245)
T PRK08945 11 LKDRIILVTGAGDGIGREAALTYARHGA---TVILLGR 45 (245)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHCCC---EEEEEEC
T ss_conf 8979899948861899999999998799---8999969
No 491
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=52.43 E-value=15 Score=15.92 Aligned_cols=37 Identities=24% Similarity=0.459 Sum_probs=27.6
Q ss_pred CHHHCEEEEECCCHH-HHHHHHHHHHCCCCCCCEEEEECCC
Q ss_conf 822411787425425-6789999998198857589995596
Q gi|254780137|r 199 KFSDIKIVTLGAGAA-ALACLNLLVTMGVRRENIWVYDLEG 238 (779)
Q Consensus 199 ~l~~~~iv~~GaGaA-g~~~a~ll~~~g~~~~~i~~~D~~G 238 (779)
+|+...+++-|+++. |-++++.|.+.|. +++++|++.
T Consensus 6 ~L~gKvalVTGgs~GIG~aia~~la~~Ga---~V~~~d~~~ 43 (266)
T PRK06171 6 NLQGKIIIVTGGSSGIGLAIVEELLAQGA---NVQMVDIHG 43 (266)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEECCH
T ss_conf 89999799947787899999999998799---999997885
No 492
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=52.41 E-value=15 Score=15.91 Aligned_cols=35 Identities=11% Similarity=0.131 Sum_probs=27.2
Q ss_pred CHHHCEEEEECCCH-HHHH--HHHHHHHCCCCCCCEEEEEC
Q ss_conf 82241178742542-5678--99999981988575899955
Q gi|254780137|r 199 KFSDIKIVTLGAGA-AALA--CLNLLVTMGVRRENIWVYDL 236 (779)
Q Consensus 199 ~l~~~~iv~~GaGa-Ag~~--~a~ll~~~g~~~~~i~~~D~ 236 (779)
.|+..+++|.|||+ -||| |++.|...|. +++++++
T Consensus 4 ~L~GK~alITGaa~~~GIG~aiA~~La~~GA---~V~i~~~ 41 (271)
T PRK06505 4 LMQGKRGLIMGVANDHSIAWGIAKQLAAQGA---ELAFTYQ 41 (271)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCC---EEEEEEC
T ss_conf 5799979997999985499999999998699---9999818
No 493
>PRK12672 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=52.41 E-value=12 Score=16.52 Aligned_cols=31 Identities=29% Similarity=0.317 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 79888899987421322354322589999999
Q gi|254780137|r 404 SYIAPAVAKAAEEAGVASSPIEDYEVYRDSLK 435 (779)
Q Consensus 404 ~~va~AVa~aA~~sGvAr~pi~d~~~Y~~~L~ 435 (779)
|.-+-+.+|||..+|+--++ .-.|.|.|+|+
T Consensus 88 PvaaH~iaRAAy~sGvkP~~-~vvD~~~e~~~ 118 (118)
T PRK12672 88 PVGAHAIAKAAHLSGYKPKR-AVVDAYLEKLR 118 (118)
T ss_pred HHHHHHHHHHHHHCCCCCCC-CHHHHHHHHCC
T ss_conf 79999999999985999850-13688776419
No 494
>PRK07831 short chain dehydrogenase; Provisional
Probab=51.83 E-value=15 Score=15.85 Aligned_cols=35 Identities=14% Similarity=0.270 Sum_probs=25.5
Q ss_pred HHHCEEEEECCCHHHH--HHHHHHHHCCCCCCCEEEEECC
Q ss_conf 2241178742542567--8999999819885758999559
Q gi|254780137|r 200 FSDIKIVTLGAGAAAL--ACLNLLVTMGVRRENIWVYDLE 237 (779)
Q Consensus 200 l~~~~iv~~GaGaAg~--~~a~ll~~~g~~~~~i~~~D~~ 237 (779)
|+.-++++.|++..|| ++++.|...|. +++++|++
T Consensus 14 L~gKvalVTGgsg~GIG~a~a~~la~~Ga---~V~i~d~~ 50 (261)
T PRK07831 14 LAGKVVVVTAAAGTGIGSATARRALEEGA---DVVISDIH 50 (261)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHCCC---EEEEEECC
T ss_conf 69984999499964789999999998799---89998087
No 495
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=51.79 E-value=15 Score=15.85 Aligned_cols=110 Identities=18% Similarity=0.181 Sum_probs=61.2
Q ss_pred HHHHHHHHHHCCCCCCC--CCCCHHHHHHHHHHHHHHHHCCCHHHCEEEEECCCHHH---HHHHH----HHHHCCCCCCC
Q ss_conf 99999998718942168--77218999999999999970988224117874254256---78999----99981988575
Q gi|254780137|r 160 EVERILSQKLKIPFLHD--DQHGTAVTVTAATLNGMKLVGKKFSDIKIVTLGAGAAA---LACLN----LLVTMGVRREN 230 (779)
Q Consensus 160 ~i~~~l~~~~~ipvf~D--D~qGTa~v~lA~llnAl~~~gk~l~~~~iv~~GaGaAg---~~~a~----ll~~~g~~~~~ 230 (779)
.+.+.+.+..++||.|- ..|=| =+|+-++.-.+.-|..++..++++.+.|-.+ ..+++ ++..+|. +
T Consensus 127 ~~~~~~a~~s~vPVIN~g~~~HPt--QaL~Dl~Ti~e~~g~~~~~~~~~i~~~~~~~~~~~~va~S~~~~~~~~g~---~ 201 (335)
T PRK04523 127 PVLNSFAKYSTVPVINMETITHPC--QELAHALALQEHFGTPLRGKKYVLTWTYHPKPLNTAVANSALTIATRMGM---D 201 (335)
T ss_pred HHHHHHHHHCCCCEECCCCCCCCH--HHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCC---E
T ss_conf 899999986688730688888848--99999999999838633698799998514774414698999999997499---0
Q ss_pred EEEEEC-CCEEECCCCCCCCHHHHHHHHCCC-----CCCHHHHCCCCCEEEEC
Q ss_conf 899955-960307873326678897745088-----98888860588378625
Q gi|254780137|r 231 IWVYDL-EGLVYEGREKKFDKWKSVYAQKSG-----PKPLSETMNNADVFLGL 277 (779)
Q Consensus 231 i~~~D~-~Gli~~~r~~~~~~~~~~~a~~~~-----~~~l~ea~~~adv~iG~ 277 (779)
+.++-- .+.... +..+.+ ...++.... ..++.++++++||+...
T Consensus 202 v~~~~P~~~~~~~--~~~~~~-~~~~~~~~g~~v~~~~d~~~al~~aDvvyt~ 251 (335)
T PRK04523 202 VTLLCPTPDYILD--ERYMDW-AEQNAAESGGSVQVSHDIDSAYAGADVVYAK 251 (335)
T ss_pred EEEECCCCCCCCC--HHHHHH-HHHHHHHCCCEEEEECCHHHHHHCCCHHHHH
T ss_conf 8998178546799--899999-9999997298599981899997323246666
No 496
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=51.73 E-value=15 Score=15.84 Aligned_cols=33 Identities=15% Similarity=0.149 Sum_probs=28.0
Q ss_pred HCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf 411787425425678999999819885758999559
Q gi|254780137|r 202 DIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLE 237 (779)
Q Consensus 202 ~~~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~ 237 (779)
=.||.+.|.|.=|.-.+-.+.+.|. +++.+|.+
T Consensus 3 ~kkI~ViGlGYVGL~~a~~lA~~G~---~Vig~D~d 35 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASRQK---QVIGVDIN 35 (415)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC---CEEEEECC
T ss_conf 8879998868778999999996889---48999899
No 497
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=51.68 E-value=15 Score=15.84 Aligned_cols=86 Identities=17% Similarity=0.045 Sum_probs=41.1
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCHHHHCCHHHHHHCCC
Q ss_conf 98899999999999999818997299997025578889778999999999987379959986730465329898963089
Q gi|254780137|r 622 SAMEIADSTILASQAICSLGMRPKVSVLFHSNSGSHCIKSSLKMRDSFEKICELSKNLEVDAIVQEEVCLSEIFCDKDVP 701 (779)
Q Consensus 622 taEqLAdIa~~aa~~ar~lGiePkVAlLS~SnfGs~~~~s~~kvr~A~eil~~~~pd~~VDGemq~D~AL~~~ia~~K~p 701 (779)
+.+++..+.-.+.+..|.+++ || +|-+|.+.+ + +++..+.+- .-....+.+.. ..-+
T Consensus 472 d~~~~~~vl~~~l~~lr~~~i-----lL------~P~mP~~se--~---i~~~Lg~~~--~~~~~w~~~~~-----~l~~ 528 (558)
T PRK12268 472 DPERAAAVLYTALNLVKLLAI-----LL------YPFLPFSAE--K---IWEMLGLPN--IEKLSWEEAAD-----PLEP 528 (558)
T ss_pred CHHHHHHHHHHHHHHHHHHHH-----HH------HCHHHHHHH--H---HHHHCCCCC--CCCCCHHHHCC-----CCCC
T ss_conf 999999999999999999999-----98------674039999--9---999849997--75555144315-----6899
Q ss_pred CCCCCCCCCEEECCCHHHHHHHHHHHHHHCCC
Q ss_conf 98777777778818912888999999986598
Q gi|254780137|r 702 NTSSSQDAQLLVFPNIDSANIALEMAKSVTNG 733 (779)
Q Consensus 702 ~S~laG~ANVLIfPnLeAaNI~yKllq~lgga 733 (779)
+.++.- . -.+||-||.--| =++.+.++|.
T Consensus 529 g~~i~~-~-~pLF~Rie~~~v-e~~~~~~~g~ 557 (558)
T PRK12268 529 GHSLNK-P-EPLFRKIDDEQI-EELTKLFGGV 557 (558)
T ss_pred CCCCCC-C-CCCCCCCCHHHH-HHHHHHHCCC
T ss_conf 599789-8-768588899999-9999986689
No 498
>PRK11539 hypothetical protein; Provisional
Probab=51.51 E-value=15 Score=15.82 Aligned_cols=31 Identities=10% Similarity=-0.002 Sum_probs=16.2
Q ss_pred CCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 99729999702557888977899999999998737
Q gi|254780137|r 642 MRPKVSVLFHSNSGSHCIKSSLKMRDSFEKICELS 676 (779)
Q Consensus 642 iePkVAlLS~SnfGs~~~~s~~kvr~A~eil~~~~ 676 (779)
+.|++|+.|..-...=.||+.. .++.+++++
T Consensus 678 v~P~~aiiS~G~~NryghP~~e----Vl~R~~~~g 708 (754)
T PRK11539 678 VNGEVALASASRYNAWRLPSVK----VKHRYQQQG 708 (754)
T ss_pred CCCCEEEECCCCCCCCCCCCHH----HHHHHHHCC
T ss_conf 4999999947889989899889----999999879
No 499
>TIGR02023 BchP-ChlP geranylgeranyl reductase; InterPro: IPR010253 This entry represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll . It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).; GO: 0045550 geranylgeranyl reductase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process.
Probab=51.50 E-value=15 Score=15.82 Aligned_cols=31 Identities=16% Similarity=0.387 Sum_probs=26.5
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf 1787425425678999999819885758999559
Q gi|254780137|r 204 KIVTLGAGAAALACLNLLVTMGVRRENIWVYDLE 237 (779)
Q Consensus 204 ~iv~~GaGaAg~~~a~ll~~~g~~~~~i~~~D~~ 237 (779)
+|+|.|+|-+|-+-|+.|.+.|. ..+|++++
T Consensus 2 dV~viGGGPsGA~AAe~LA~~G~---~tiLlER~ 32 (408)
T TIGR02023 2 DVAVIGGGPSGAAAAETLARAGI---ETILLERA 32 (408)
T ss_pred CEEEEECCCCHHHHHHHHHHCCC---EEEEEEHH
T ss_conf 67898168506899999986497---48863024
No 500
>PRK07576 short chain dehydrogenase; Provisional
Probab=51.49 E-value=15 Score=15.82 Aligned_cols=35 Identities=14% Similarity=0.281 Sum_probs=21.9
Q ss_pred CHHHCEEEEECCCHH-HHHHHHHHHHCCCCCCCEEEEEC
Q ss_conf 822411787425425-67899999981988575899955
Q gi|254780137|r 199 KFSDIKIVTLGAGAA-ALACLNLLVTMGVRRENIWVYDL 236 (779)
Q Consensus 199 ~l~~~~iv~~GaGaA-g~~~a~ll~~~g~~~~~i~~~D~ 236 (779)
+|+..++++.|++.. |-++++.|.+.|. +++++|+
T Consensus 5 ~L~gK~alVTGgs~GIG~aia~~la~~Ga---~V~i~~r 40 (260)
T PRK07576 5 RLAGKNVFVVGGTSGINLGIAQAFARAGA---NVAVASR 40 (260)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEEC
T ss_conf 23899899958961999999999998799---9999979
Done!