RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780137|ref|YP_003064550.1| malic enzyme [Candidatus
Liberibacter asiaticus str. psy62]
(779 letters)
>gnl|CDD|183799 PRK12862, PRK12862, malic enzyme; Reviewed.
Length = 763
Score = 1060 bits (2744), Expect = 0.0
Identities = 407/756 (53%), Positives = 542/756 (71%), Gaps = 4/756 (0%)
Query: 18 DSLFKQALLYHQYPSPGKLEVNATKMLNDQKDLSLAYSPGVAAPSMMIAEDPSKAAMYTN 77
L + AL YH++P+PGK+E+ TK L +Q+DL+LAYSPGVAAP + IA DP+ AA YT+
Sbjct: 9 AELREAALDYHRFPTPGKIEIAPTKPLANQRDLALAYSPGVAAPCLEIAADPANAARYTS 68
Query: 78 RSNLVAVVSNGSAVLGLGDIGPLASKPVMEGKAVLFKKFAGINVFDIEINAKDVDTMVST 137
R NLVAVVSNG+AVLGLG+IGPLASKPVMEGKAVLFKKFAGI+VFDIE++ D D +V
Sbjct: 69 RGNLVAVVSNGTAVLGLGNIGPLASKPVMEGKAVLFKKFAGIDVFDIELDESDPDKLVEI 128
Query: 138 IVALEPTFGGINLEDIKAPECFEVERILSQKLKIPFLHDDQHGTAVTVTAATLNGMKLVG 197
+ ALEPTFGGINLEDIKAPECF +ER L +++KIP HDDQHGTA+ V AA LNG+KLVG
Sbjct: 129 VAALEPTFGGINLEDIKAPECFYIERELRERMKIPVFHDDQHGTAIIVAAALLNGLKLVG 188
Query: 198 KKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQ 257
K D+K+V GAGAAALACL+LLV++GV+RENIWV D++G+VYEGR + D WK+ YAQ
Sbjct: 189 KDIEDVKLVASGAGAAALACLDLLVSLGVKRENIWVTDIKGVVYEGRTELMDPWKARYAQ 248
Query: 258 KSGPKPLSETMNNADVFLGLSVAGALDPAILKFMAEKPLIMVLANPNPEAMPDEIKKVRP 317
K+ + L+E + ADVFLGLS AG L P ++K MA +PLI LANP PE +P+E + VRP
Sbjct: 249 KTDARTLAEVIEGADVFLGLSAAGVLKPEMVKKMAPRPLIFALANPTPEILPEEARAVRP 308
Query: 318 DAMICTGRSDFSNQVNNVLCFPYIFRGALDCGATAITEEMKVAAARAMAVLVRDVPPDVV 377
DA+I TGRSD+ NQVNNVLCFPYIFRGALD GAT I EEMK+AA RA+A L R+ DVV
Sbjct: 309 DAIIATGRSDYPNQVNNVLCFPYIFRGALDVGATTINEEMKIAAVRAIAELAREEQSDVV 368
Query: 378 FDNFAKESPVFGPNYLIPSPFDPNLISYIAPAVAKAAEEAGVASSPIEDYEVYRDSLKRF 437
+ E FGP+YLIP PFDP LI IAPAVA+AA ++GVA+ PIED + YR+ L +F
Sbjct: 369 AAAYGGEDLSFGPDYLIPKPFDPRLILKIAPAVAQAAMDSGVATRPIEDMDAYREQLNQF 428
Query: 438 SFPGRSLMKKIFSIAKGTDSKRILFSAGEDERVLRATQILIKENIARPVLIGSLLTIQDN 497
+ +MK +F+ AK KR++F+ GEDERVLRA Q+++ E +A+P+LIG I+
Sbjct: 429 VYHSGLIMKPVFAAAK-AAPKRVVFAEGEDERVLRAAQVVVDEGLAKPILIGRPAVIEAR 487
Query: 498 IRRHDLQIIATKDFDVIDLNNKQSLKDYVDSYRSLSAEKGISLDSIYDLLRSNTTLLGSL 557
I R L++ DF++++ + +DY D+Y +L KG++ + +R TTL+G++
Sbjct: 488 IERAGLRLRPGVDFEIVNPEDDPRYRDYWDTYHALMGRKGVTPEMARREVRRRTTLIGAM 547
Query: 558 ALKRGEGDGMICMCDSESGYNSHLTDIHKIIGMGLGISHYSAMSMCIVRDNFLFFTDTHV 617
+KRGE D MI C +E Y HL + ++IG G+ Y+AMS+ I+ LF DTHV
Sbjct: 548 MVKRGEADAMI--CGTEGRYERHLEFVLQVIGKRPGVRVYAAMSLLILPGRTLFLADTHV 605
Query: 618 SAEPSAMEIADSTILASQAICSLGMRPKVSVLFHSNSGSHCIKSSLKMRDSFEKICELSK 677
+ +P+A E+A+ TILA++ + G+ PKV++L HSN GS S+ KMR++ E + E +
Sbjct: 606 NEDPTAEELAEITILAAEEVRRFGIEPKVALLSHSNFGSSDSPSARKMREALEILRERAP 665
Query: 678 NLEVDAIVQEEVCLSEIFCDKDVPNTSSSQDAQLLVFPNIDSANIALEMAKSVT-NGLHI 736
+LEVD + + L E D+ P++ +A LLVFPN+D+ANIA + K+ NGL +
Sbjct: 666 DLEVDGEMHGDAALDEELRDRIFPDSRLEGEANLLVFPNLDAANIAYNLLKTAAGNGLAV 725
Query: 737 GTLLLGAALPVHIVPSSVSVREIIDMVALVMASNNS 772
G +LLGAA PVHI+ S +VR I++M AL +A N+
Sbjct: 726 GPILLGAAKPVHILTPSATVRRIVNMTALAVADANA 761
>gnl|CDD|180898 PRK07232, PRK07232, bifunctional malic enzyme
oxidoreductase/phosphotransacetylase; Reviewed.
Length = 752
Score = 1041 bits (2695), Expect = 0.0
Identities = 369/748 (49%), Positives = 513/748 (68%), Gaps = 3/748 (0%)
Query: 18 DSLFKQALLYHQYPSPGKLEVNATKMLNDQKDLSLAYSPGVAAPSMMIAEDPSKAAMYTN 77
+ L + AL YH++P PGK+EV TK L Q+DLSLAYSPGVAAP + IA+DP+ A YT
Sbjct: 1 EQLKQAALDYHRFPRPGKIEVTPTKPLATQRDLSLAYSPGVAAPCLEIAKDPADAYKYTA 60
Query: 78 RSNLVAVVSNGSAVLGLGDIGPLASKPVMEGKAVLFKKFAGINVFDIEINAKDVDTMVST 137
R NLVAV+SNG+AVLGLG+IG LASKPVMEGK VLFKKFAGI+VFDIE++ +D D +
Sbjct: 61 RGNLVAVISNGTAVLGLGNIGALASKPVMEGKGVLFKKFAGIDVFDIEVDEEDPDKFIEA 120
Query: 138 IVALEPTFGGINLEDIKAPECFEVERILSQKLKIPFLHDDQHGTAVTVTAATLNGMKLVG 197
+ ALEPTFGGINLEDIKAPECF +E L +++ IP HDDQHGTA+ AA LN ++LVG
Sbjct: 121 VAALEPTFGGINLEDIKAPECFYIEEKLRERMDIPVFHDDQHGTAIISAAALLNALELVG 180
Query: 198 KKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQ 257
KK D+KIV GAGAAA+ACLNLLV +G ++ENI V D +G++Y+GR + D+WK+ YA
Sbjct: 181 KKIEDVKIVVSGAGAAAIACLNLLVALGAKKENIIVCDSKGVIYKGRTEGMDEWKAAYAV 240
Query: 258 KSGPKPLSETMNNADVFLGLSVAGALDPAILKFMAEKPLIMVLANPNPEAMPDEIKKVRP 317
+ + L+E + ADVFLGLS AG L P ++K MA+ P+I LANP+PE P+E K VRP
Sbjct: 241 DTDARTLAEAIEGADVFLGLSAAGVLTPEMVKSMADNPIIFALANPDPEITPEEAKAVRP 300
Query: 318 DAMICTGRSDFSNQVNNVLCFPYIFRGALDCGATAITEEMKVAAARAMAVLVRDVPPDVV 377
DA+I TGRSD+ NQVNNVLCFPYIFRGALD GAT I EEMK+AA RA+A L R+ D V
Sbjct: 301 DAIIATGRSDYPNQVNNVLCFPYIFRGALDVGATTINEEMKLAAVRAIAELAREEVSDEV 360
Query: 378 FDNFAKESPVFGPNYLIPSPFDPNLISYIAPAVAKAAEEAGVASSPIEDYEVYRDSLKRF 437
+ + FGP Y+IP PFDP LI IAPAVAKAA ++GVA+ PI D + YR+ L+ F
Sbjct: 361 AAAYGGQKLSFGPEYIIPKPFDPRLIVKIAPAVAKAAMDSGVATRPIADMDAYREKLEAF 420
Query: 438 SFPGRSLMKKIFSIAKGTDSKRILFSAGEDERVLRATQILIKENIARPVLIGSLLTIQDN 497
+ +MK IF+ AK D KR++F+ GE+ERVLRA Q ++ E +A+P+LIG I+
Sbjct: 421 VYKTGLVMKPIFAKAK-KDPKRVVFAEGEEERVLRAAQEVVDEGLAKPILIGRPEVIEAR 479
Query: 498 IRRHDLQIIATKDFDVIDLNNKQSLKDYVDSYRSLSAEKGISLDSIYDLLRSNTTLLGSL 557
I++ L + A DF++++ + ++Y Y L KG++ + L+R + T++G++
Sbjct: 480 IKKLGLDLKAGVDFEIVNPEDDPRYEEYWQYYYELLQRKGVTPEDARRLVRRDRTVIGAM 539
Query: 558 ALKRGEGDGMICMCDSESGYNSHLTDIHKIIGMGLGISHYSAMSMCIVRDNFLFFTDTHV 617
+ RG+ D MI C Y+ HL + ++IG+ G+ +AM+ +++ LF DT+V
Sbjct: 540 MVARGDADAMI--CGLTGRYHEHLRPVRQVIGLRPGVHTAAAMNALLLKGGNLFIADTYV 597
Query: 618 SAEPSAMEIADSTILASQAICSLGMRPKVSVLFHSNSGSHCIKSSLKMRDSFEKICELSK 677
+ +P+A E+A+ ++A++ + G+ P+V++L HSN GS S+ KMR++ E + E +
Sbjct: 598 NEDPTAEELAEIALMAAEEVRRFGIEPRVALLSHSNFGSSDSPSARKMREAVELLRERAP 657
Query: 678 NLEVDAIVQEEVCLSEIFCDKDVPNTSSSQDAQLLVFPNIDSANIALEMAKSVTNGLHIG 737
+LEVD + + L+E P + A +LV PN+++ANI+ + K + G+ IG
Sbjct: 658 DLEVDGEMHGDAALNEEIRKDLYPFSRLKGPANVLVMPNLEAANISYNLLKELGGGVTIG 717
Query: 738 TLLLGAALPVHIVPSSVSVREIIDMVAL 765
+LLG A PVHI+ S +VR I++M AL
Sbjct: 718 PILLGMAKPVHILTPSATVRRIVNMTAL 745
>gnl|CDD|183798 PRK12861, PRK12861, malic enzyme; Reviewed.
Length = 764
Score = 804 bits (2078), Expect = 0.0
Identities = 364/762 (47%), Positives = 495/762 (64%), Gaps = 7/762 (0%)
Query: 18 DSLFKQALLYHQYPSPGKLEVNATKMLNDQKDLSLAYSPGVAAPSMMIAEDPSKAAMYTN 77
++ + AL YH++P+PGK+ V A+K L Q+DL+LAY+PGVA+ IA DP A +T+
Sbjct: 5 ETQRQAALDYHEFPTPGKISVVASKPLVTQRDLALAYTPGVASACEEIAADPLNAFRFTS 64
Query: 78 RSNLVAVVSNGSAVLGLGDIGPLASKPVMEGKAVLFKKFAGINVFDIEINAKDVDTMVST 137
R NLV V++NG+AVLGLG+IG LASKPVMEGKAVLFKKFAGI+VFDIEIN D D +V
Sbjct: 65 RGNLVGVITNGTAVLGLGNIGALASKPVMEGKAVLFKKFAGIDVFDIEINETDPDKLVDI 124
Query: 138 IVALEPTFGGINLEDIKAPECFEVERILSQKLKIPFLHDDQHGTAVTVTAATLNGMKLVG 197
I LEPTFGGINLEDIKAPECF VER L +++KIP HDDQHGTA+TV+AA +NG+K+VG
Sbjct: 125 IAGLEPTFGGINLEDIKAPECFTVERKLRERMKIPVFHDDQHGTAITVSAAFINGLKVVG 184
Query: 198 KKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLVYEGREKKFDKWKSVYAQ 257
K ++K+VT GAGAAALACL+LLV +G+ ENIWV D+EG+VY GR D K +AQ
Sbjct: 185 KSIKEVKVVTSGAGAAALACLDLLVDLGLPVENIWVTDIEGVVYRGRTTLMDPDKERFAQ 244
Query: 258 KSGPKPLSETMNNADVFLGLSVAGALDPAILKFMAEKPLIMVLANPNPEAMPDEIKKVRP 317
++ + L+E + ADVFLGLS G L +LK MA +PLI+ LANP PE P+ R
Sbjct: 245 ETDARTLAEVIGGADVFLGLSAGGVLKAEMLKAMAARPLILALANPTPEIFPELAHATRD 304
Query: 318 DAMICTGRSDFSNQVNNVLCFPYIFRGALDCGATAITEEMKVAAARAMAVLVRDVPPDVV 377
D +I TGRSD+ NQVNNVLCFPYIFRGALD GAT IT EM++AA A+A L + DVV
Sbjct: 305 DVVIATGRSDYPNQVNNVLCFPYIFRGALDVGATTITREMEIAAVHAIAGLAEEEQNDVV 364
Query: 378 FDNFAKESPVFGPNYLIPSPFDPNLISYIAPAVAKAAEEAGVASSPIEDYEVYRDSLKRF 437
+ FGP YLIP PFDP LI IAPAVAKAA E GVA+ PI D + Y + L++F
Sbjct: 365 AAAYGAYDVSFGPQYLIPKPFDPRLIVRIAPAVAKAAMEGGVATRPIADLDAYVEQLQQF 424
Query: 438 SFPGRSLMKKIFSIAKGT----DSKRILFSAGEDERVLRATQILIKENIARPVLIGSLLT 493
+ + MK +F+ A+ RI+F+ GEDERVLRA Q+++ E +ARP+L+G
Sbjct: 425 VYHSGAFMKPLFAAARQLVRDGGKARIVFTEGEDERVLRAVQVIVDEKLARPILVGRPEV 484
Query: 494 IQDNIRRHDLQIIATKDFDVIDLNNKQSLKDYVDSYRSLSAEKGISLDSIYDLLRSNTTL 553
+ I R L++ +D +V + + Y +Y L GIS + +R TL
Sbjct: 485 LLARIERFGLRLRLGQDVEVTNPEYDERFPQYWTTYWELRCRDGISKEMARVEMRRRLTL 544
Query: 554 LGSLALKRGEGDGMICMCDSESGYNSHLTDIHKIIGMGLGISHYSAMSMCIVRDNFLFFT 613
+G++ ++ G+ DGMI C + Y++HL + ++IG G S Y+AM++ ++ +
Sbjct: 545 IGAMMVRLGDADGMI--CGTVGEYHNHLRFVDEVIGRKPGASTYAAMNILLLDQRTVALV 602
Query: 614 DTHVSAEPSAMEIADSTILASQAICSLGMRPKVSVLFHSNSGSHCIKSSLKMRDSFEKIC 673
DTHV+ P A +IA+ TI A++ + L + PKV++L SN GS S +KMR + E +
Sbjct: 603 DTHVNDNPDAEQIAEFTIAAARQMEWLNLTPKVALLSRSNFGSGSAASGVKMRRALEIVR 662
Query: 674 ELSKNLEVDAIVQEEVCLSEIFCDKDVPNTSSSQDAQLLVFPNIDSANIALEMAKSVT-N 732
E + +LE D + + L E + +P + A LLV PN+D+ NIA + K+ +
Sbjct: 663 EQAPDLEADGEMHGDCALDEGLRARLLPMSPLKGAANLLVCPNVDAGNIAYNLLKTEAGS 722
Query: 733 GLHIGTLLLGAALPVHIVPSSVSVREIIDMVALVMASNNSNS 774
+ +G LLG PV+I+ SS +VR I++M AL + N N
Sbjct: 723 NVAVGPFLLGVNAPVNILTSSATVRRIVNMAALTVIEANRNV 764
>gnl|CDD|184116 PRK13529, PRK13529, malate dehydrogenase; Provisional.
Length = 563
Score = 125 bits (317), Expect = 4e-29
Identities = 116/430 (26%), Positives = 172/430 (40%), Gaps = 121/430 (28%)
Query: 82 VAVVSNGSAVLGLGDIG------PLASKPVMEGKAVLFKKFAGIN-------VFDIEINA 128
+ VV++G +LG+GD G P+ GK L+ GI+ V D+ N
Sbjct: 149 LIVVTDGERILGIGDQGIGGMGIPI-------GKLSLYTACGGIDPARTLPVVLDVGTNN 201
Query: 129 KD-----------------------VDTMVSTIVALEPTFGGINL----EDIKAPECFEV 161
+ VD V + P N ED
Sbjct: 202 EQLLNDPLYLGWRHPRIRGEEYDEFVDEFVQAVKRRFP-----NALLQFEDFAQKNAR-- 254
Query: 162 ERILSQ-KLKIPFLHDDQHGTAVTVTAATLNGMKLVGKKFSDIKIVTLGAGAAALACLNL 220
RIL + + +I +DD GT A L +K+ G+ SD +IV LGAG+A +
Sbjct: 255 -RILERYRDEICTFNDDIQGTGAVTLAGLLAALKITGEPLSDQRIVFLGAGSAGCGIADQ 313
Query: 221 LVTMGVR--------RENIWVYDLEGLVYEGREKKFDKWKSVYAQK----------SGPK 262
+V VR R+ ++ D +GL+ + D ++ YA+K
Sbjct: 314 IVAAMVREGLSEEEARKRFFMVDRQGLLTDDMPDLLD-FQKPYARKREELADWDTEGDVI 372
Query: 263 PLSETMNNA--DVFLGLS-VAGALDPAILKFMA---EKPLIMVLANP--NPEAMPDEI-- 312
L E + N V +G+S GA I+K MA E+P+I L+NP EA P+++
Sbjct: 373 SLLEVVRNVKPTVLIGVSGQPGAFTEEIVKEMAAHCERPIIFPLSNPTSRAEATPEDLIA 432
Query: 313 ----KKVRPDAMICTGRSDFSN-----------QVNNVLCFPYIFRGALDCGATAITEEM 357
+ A++ TG S F+ Q NN FP + G + GA +T+ M
Sbjct: 433 WTDGR-----ALVATG-SPFAPVEYNGKTYPIGQCNNAYIFPGLGLGVIASGARRVTDGM 486
Query: 358 KVAAARAMAVLVRDVPPDVVFDNFAKESPVFGPNYLIPSPFDPNLIS-YIAPAVAKAAEE 416
+AAA A+A VP P G L+P D +S IA AVAKAA E
Sbjct: 487 LMAAAHALADC---VPL---------AKPGEGA--LLPPVEDIREVSRAIAIAVAKAAIE 532
Query: 417 AGVASSPIED 426
G+A ++
Sbjct: 533 EGLARETSDE 542
>gnl|CDD|178675 PLN03129, PLN03129, NADP-dependent malic enzyme; Provisional.
Length = 581
Score = 120 bits (303), Expect = 1e-27
Identities = 109/410 (26%), Positives = 163/410 (39%), Gaps = 93/410 (22%)
Query: 82 VAVVSNGSAVLGLGDIG------PLASKPVMEGKAVLFKKFAGIN-------VFDIEINA 128
V VV++G +LGLGD+G P GK L+ GI D+ N
Sbjct: 174 VIVVTDGERILGLGDLGVQGMGIP-------VGKLDLYTAAGGIRPSAVLPVCIDVGTNN 226
Query: 129 KDV--------------------DTMVSTIVALEPTFGG---INLEDIKAPECFEVERIL 165
+ + + + + A++ +G + ED F R+L
Sbjct: 227 EKLLNDPFYIGLRQPRLTGEEYDELVDEFMEAVKQRWGPKVLVQFEDFANKNAF---RLL 283
Query: 166 SQKLKIPFL--HDDQHGTAVTVTAATLNGMKLVGKKFSDIKIVTLGAGAAALACLNLLVT 223
Q+ + L +DD GTA A L ++ G +D +I+ GAG A L+
Sbjct: 284 -QRYRTTHLCFNDDIQGTAAVALAGLLAALRATGGDLADQRILFAGAGEAGTGIAELIAL 342
Query: 224 MGVR---------RENIWVYDLEGLVYEGREKKFDKWKSVYAQKSGP-KPLSETMNNA-- 271
R R+ IW+ D +GLV + R+ +K +A P L E +
Sbjct: 343 AMSRQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFAHDHEPGASLLEAVKAIKP 402
Query: 272 DVFLGLS-VAGALDPAILKFMA---EKPLIMVLANP--NPEAMPDEIKKVRPDAMICTGR 325
V +GLS V G +L+ MA E+P+I L+NP E +E I
Sbjct: 403 TVLIGLSGVGGTFTKEVLEAMASLNERPIIFALSNPTSKAECTAEEAYTWTGGRAIFASG 462
Query: 326 SDFS-----------NQVNNVLCFPYIFRGALDCGATAITEEMKVAAARAMAVLVRDVPP 374
S F Q NN FP I GAL GA +T++M +AAA A+A V +
Sbjct: 463 SPFDPVEYNGKTFHPGQANNAYIFPGIGLGALLSGAIRVTDDMLLAAAEALAAQVTE--- 519
Query: 375 DVVFDNFAKESPVFGPNYLIPSPFDPNLIS-YIAPAVAKAAEEAGVASSP 423
+ AK + ++ P I IS ++A AVA A E G+A+
Sbjct: 520 ----EELAKGA-IYPPFSRIRD------ISAHVAAAVAAKAYEEGLATRL 558
>gnl|CDD|161978 TIGR00651, pta, phosphate acetyltransferase. Model contains a gene
from E.coli coding for ethanolamine utilization protein
(euti) and also contains similarity to malate
oxidoreductases.
Length = 303
Score = 113 bits (285), Expect = 2e-25
Identities = 78/307 (25%), Positives = 151/307 (49%), Gaps = 7/307 (2%)
Query: 460 ILFSAGEDERVLRATQILIKENIARPVLIGSLLTIQDNIRRHDLQIIATKDFDVIDLNNK 519
I+F G + RVL+A +L + IA PV++G+ I + +L + +ID +
Sbjct: 1 IVFPEGWEPRVLKAAALLAERGIATPVVLGNPEEIVPSAAGCNLDL---GHVVIIDPDVS 57
Query: 520 QSLKDYVDSYRSLSAEKGISLDSIYDLLRSNTTLLGSLALKRGEGDGMICMCDSESGYNS 579
+ Y + Y L KG++L LR + ++ + GE DG++ +
Sbjct: 58 PDRESYAERYYELRKHKGMTLAQARKQLRDESYF-ATMMVALGEADGLVS--GAVHTTAD 114
Query: 580 HLTDIHKIIGMGLGISHYSAMSMCIVRDNFLFFTDTHVSAEPSAMEIADSTILASQAICS 639
L +II G+ S++ + + + L F D V+ +P+A ++A+ I ++++ S
Sbjct: 115 TLRPALQIIKTLPGVKIVSSVFIMDLNEEVLVFGDCAVNPDPNAEQLAEIAIQSAKSAKS 174
Query: 640 LG-MRPKVSVLFHSNSGSHCIKSSLKMRDSFEKICELSKNLEVDAIVQEEVCLSEIFCDK 698
G + PKV++L +S GS + K+R++ E +L +D +Q + E +K
Sbjct: 175 FGEIEPKVALLSYSTKGSGSGEDVEKVREATRIAKEKRPDLTIDGELQFDAAFVEKVAEK 234
Query: 699 DVPNTSSSQDAQLLVFPNIDSANIALEMAKSVTNGLHIGTLLLGAALPVHIVPSSVSVRE 758
PN+ + A + VFP++D+ NI ++ + + + IG +L G + PV+ + SV +
Sbjct: 235 KAPNSPVAGSANVFVFPDLDAGNIGYKIVQRLGDADAIGPILQGLSKPVNDLSRGCSVED 294
Query: 759 IIDMVAL 765
I++ A+
Sbjct: 295 IVNTGAI 301
>gnl|CDD|185552 PTZ00317, PTZ00317, NADP-dependent malic enzyme; Provisional.
Length = 559
Score = 113 bits (285), Expect = 2e-25
Identities = 106/408 (25%), Positives = 163/408 (39%), Gaps = 84/408 (20%)
Query: 82 VAVVSNGSAVLGLGDIGPLASKPVMEGKAVLFKKFAGIN-------VFDIEINAKD---- 130
V V+++GS +LGLGD+G + GK L+ GIN V D+ N +
Sbjct: 151 VIVITDGSRILGLGDLG-ANGMGISIGKLSLYVAGGGINPSRVLPVVLDVGTNNEKLLND 209
Query: 131 -------------------VDTMVSTIVALEPTFGGINLEDIKAPECFEV-ERILSQKLK 170
+D + + + P + ED CF++ ER Q K
Sbjct: 210 PLYLGLREKRLDDDEYYELLDEFMEAVSSRWPN-AVVQFEDFSNNHCFDLLERY--QN-K 265
Query: 171 IPFLHDDQHGTAVTVTAATLNGMKLVGKKFSDIKIVTLGAGAAALACLNLLVTMGVR--- 227
+DD GT + A LN +KL G + +IV GAG+AA+ N + +
Sbjct: 266 YRCFNDDIQGTGAVIAAGFLNALKLSGVPPEEQRIVFFGAGSAAIGVANNIADLAAEYGV 325
Query: 228 -----RENIWVYDLEGLVYEGREKKFDKWKSVYAQK------SGPKPLSETMNNA--DVF 274
++ ++ D +GLV R K K K +A+ S K L + +
Sbjct: 326 TREEALKSFYLVDSKGLVTTTRGDKLAKHKVPFARTDISAEDSSLKTLEDVVRFVKPTAL 385
Query: 275 LGLS-VAGALDPAILKFMA---EKPLIMVLANP--NPEAMPDEIKKVRPDAMICTGRSDF 328
LGLS V G ++K MA E+P+I L+NP E ++ K I S F
Sbjct: 386 LGLSGVGGVFTEEVVKTMASNVERPIIFPLSNPTSKAECTAEDAYKWTNGRAIVASGSPF 445
Query: 329 -----------SNQVNNVLCFPYIFRGALDCGATAITEEMKVAAARAMAVLVRDVPPDVV 377
+Q NN+ FP + G + I +EM +AAA ++A L V + +
Sbjct: 446 PPVTLNGKTIQPSQGNNLYVFPGVGLGCAIAQPSYIPDEMLIAAAASLATL---VSEEDL 502
Query: 378 FDNFAKESPVFGPNYLIPSPFDPNLIS-YIAPAVAKAAEEAGVASSPI 424
+ L P D IS +IA V + A+E G+A +
Sbjct: 503 RE-----------GKLYPPLEDIREISAHIAVDVIEEAQEMGIAKNKD 539
>gnl|CDD|182020 PRK09653, eutD, phosphotransacetylase; Reviewed.
Length = 324
Score = 112 bits (283), Expect = 3e-25
Identities = 91/338 (26%), Positives = 161/338 (47%), Gaps = 33/338 (9%)
Query: 443 SLMKKIFSIAKGTDSKRILFSAGEDERVLRATQILIKENIARPVLIGSLLTIQDNIRRHD 502
L + + AKG K+I+ GEDERVL+A + L KE + P+L+G+ I+ +
Sbjct: 2 DLFESLKEKAKGKK-KKIVLPEGEDERVLKAAKRLQKEGLVEPILLGNPEEIRAKAKELG 60
Query: 503 LQIIATKDFDVIDLNNKQSLKDYVDSYRSLSAEKGISLDSIYDLLRSNTTLLGSLALKRG 562
L ++ID L+++ +++ L KG D+ +LL+ G++ +K G
Sbjct: 61 L---DLDGVEIIDPETYPLLEEFAEAFVELRKGKGTEEDAA-ELLKDP-NYFGTMLVKLG 115
Query: 563 EGDGMICMCDSESGYNSHLTDI----HKIIGMGLGISHYS-AMSMCIVRDNFLFFTDTHV 617
+ DGM+ SG D +II G+ S M + D F D V
Sbjct: 116 KADGMV------SGAIHSTADTLRPALQIIKTKPGVKTVSSVFIM-VKGDERYIFADCAV 168
Query: 618 SAEPSAMEIADSTILASQAICSLGMRPKVSVLFHSNSGSHCIKSSLKMRDSFEKICELSK 677
+ P+A ++A+ I +++ + G+ PKV++L S GS K++++ E EL+
Sbjct: 169 NPNPTAEQLAEIAINSAETAKAFGIDPKVAMLSFSTKGSAKGPEVDKVQEATEIAKELAP 228
Query: 678 NLEVD-------AIVQEEVCLSEIFCDKDVPNTSSSQDAQLLVFPNIDSANIALEMAKSV 730
+L++D A V EV K P + + A + VFP++++ NI ++A+ +
Sbjct: 229 DLKIDGELQFDAAFV-PEV------AAKKAPGSPVAGKANVFVFPSLEAGNIGYKIAQRL 281
Query: 731 TNGLHIGTLLLGAALPVHIVPSSVSVREIIDMVALVMA 768
+G +L G PV+ + SV +I + +AL+ A
Sbjct: 282 GGFEAVGPILQGLNKPVNDLSRGCSVEDIYN-LALITA 318
>gnl|CDD|180175 PRK05632, PRK05632, phosphate acetyltransferase; Reviewed.
Length = 684
Score = 60.2 bits (147), Expect = 2e-09
Identities = 28/112 (25%), Positives = 52/112 (46%), Gaps = 5/112 (4%)
Query: 456 DSKRILFSAGEDERVLRATQILIKENIARPVLIGSLLTIQDNIRRHDLQIIATKDFDVID 515
KRI+ G++ R L+A I ++ IA VL+G+ I+ + + ++ID
Sbjct: 376 AKKRIVLPEGDEPRTLKAAAICLERGIADCVLLGNPEEIRRVAAAQGVDLP--AGIEIID 433
Query: 516 LNNKQSLKDYVDSYRSLSAEKGISLDSIYDLLRSNTTLLGSLALKRGEGDGM 567
+ + + YV L KG++ + + L + G++ L GE DG+
Sbjct: 434 PS--EVRERYVAPLVELRKHKGMTEEVAREQL-EDNVYFGTMMLALGEVDGL 482
>gnl|CDD|180267 PRK05805, PRK05805, phosphate butyryltransferase; Validated.
Length = 301
Score = 37.4 bits (87), Expect = 0.015
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 446 KKIFSIAKGTDSKRILFSAGEDERVLRATQILIKENIARPVLIGSLLTIQDNIRRHDLQI 505
+I S AK K I + +DE VL A + + IA +L+G I++ + D+ +
Sbjct: 6 DEILSKAKEQPPKTISVAVAQDEPVLEAVKEAKELGIANAILVGDKEKIKEIAKEIDMDL 65
Query: 506 IATKDFDVIDLNN--KQSLK 523
+DF++ID + K +LK
Sbjct: 66 ---EDFEIIDEKDNRKAALK 82
>gnl|CDD|162980 TIGR02706, P_butyryltrans, phosphate butyryltransferase. Members
of this family are phosphate butyryltransferase, also
called phosphotransbutyrylase. In general, this enzyme
is found in butyrate-producing anaerobic bacteria,
encoded next to the gene for butyrate kinase. Together,
these two enzymes represent what may be the less common
of two pathways for butyrate production from
butyryl-CoA. The alternative is transfer of the CoA
group to acetate by butyryl-CoA:acetate CoA transferase.
Cutoffs for this model are set such that the homolog
from Thermotoga maritima, whose activity on butyryl-CoA
is only 30 % of its activity with acetyl-CoA, scores in
the zone between trusted and noice cutoffs.
Length = 294
Score = 32.8 bits (75), Expect = 0.34
Identities = 15/75 (20%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 445 MKKIFSIAKGTDSKRILFSAGEDERVLRATQILIKENIARPVLIGSLLTIQDNIRRHDLQ 504
+++ K K + + +DE VL A + + IAR +L+G ++ I +
Sbjct: 1 FEELIEKVKECPMKTVAVAVAQDEPVLEAVKEAKEHGIARAILVGD----EEKINEIAKK 56
Query: 505 I-IATKDFDVIDLNN 518
I + D ++++ +
Sbjct: 57 IGMNLDDVEIVNAPS 71
Score = 28.9 bits (65), Expect = 5.7
Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Query: 708 DAQLLVFPNIDSANIALEMAKSVT--NGLHIGTLLLGAALPV 747
A +L+ P+I++ N+ + K++T G +L+G PV
Sbjct: 233 KADILLVPDIEAGNV---LYKTLTYFAKSKNGGILVGTKAPV 271
>gnl|CDD|79056 PRK12581, PRK12581, oxaloacetate decarboxylase; Provisional.
Length = 468
Score = 31.6 bits (71), Expect = 0.73
Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 11/93 (11%)
Query: 516 LNNKQSLKDYVDSYRSLSAEKGISLDSIYDLLRSNTTLLGSL-ALKRGEGDGMICMCDSE 574
L + D VD + SLSA+ GI + I+D L + +L A+K+ + +C+ +
Sbjct: 97 LGYRHYADDIVDKFISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQLCIAYTT 156
Query: 575 S---GYNSHLTDIHKIIGMGLGISHYSAMSMCI 604
S N +L+ + +++ MG A S+CI
Sbjct: 157 SPVHTLNYYLSLVKELVEMG-------ADSICI 182
>gnl|CDD|182753 PRK10814, PRK10814, outer membrane-specific lipoprotein transporter
subunit LolC; Provisional.
Length = 399
Score = 31.2 bits (71), Expect = 1.1
Identities = 18/33 (54%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Query: 736 IGTLLLGAALPVHIVPSSVSVREIIDMVALVMA 768
IG LL GAALPV I P V V I +VA+ +A
Sbjct: 347 IGVLLDGAALPVAIEPLQVIV---IALVAMAIA 376
>gnl|CDD|179681 PRK03946, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase;
Provisional.
Length = 307
Score = 31.1 bits (71), Expect = 1.2
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 643 RPKVSVLFHSNSGSHCIKSSLKMRDSFEKICELSKNLEVDAIV 685
V +LF G KS +SF+K EL+ + EVDAIV
Sbjct: 59 DFPVGLLFEIKPGKVSAKSGAYSFESFKKAVELADSKEVDAIV 101
>gnl|CDD|181101 PRK07742, PRK07742, phosphate butyryltransferase; Validated.
Length = 299
Score = 30.8 bits (70), Expect = 1.5
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 452 AKGTDSKRILFSAGEDERVLRATQILIKENIARPVLIGSLLTIQDNIRRHDLQIIATKDF 511
A G K + + EDE V+ A I+ +AR L G+ I ++ H + ++
Sbjct: 10 AAGQPKKTVAVAVAEDEEVIEAVAKAIELQLARFRLYGNQEKIMGMLQEH--GLQTSEHI 67
Query: 512 DVI 514
++I
Sbjct: 68 EII 70
>gnl|CDD|179117 PRK00770, PRK00770, deoxyhypusine synthase-like protein;
Provisional.
Length = 384
Score = 30.5 bits (69), Expect = 1.7
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 264 LSETMNNADVFLGLSVAGALDPAILKFMAEKPLI 297
L++ M + V +GL+++GA+ PA A PLI
Sbjct: 43 LAQRMIDDGVTVGLTLSGAMTPAGFGVSALAPLI 76
>gnl|CDD|147842 pfam05910, DUF868, Plant protein of unknown function (DUF868).
This family consists of several hypothetical proteins
from Arabidopsis thaliana and Oryza sativa. The function
of this family is unknown.
Length = 272
Score = 29.2 bits (66), Expect = 3.7
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
Query: 82 VAVVSNGSAVLGLGDIG-----PLASKPVMEGKAVLFKK 115
VAVV++G VL LGD+ S+P A++ KK
Sbjct: 99 VAVVADGEVVLLLGDLKKEAYKRTKSRPAPVDAALVSKK 137
>gnl|CDD|107058 PHA01745, PHA01745, hypothetical protein.
Length = 306
Score = 29.5 bits (66), Expect = 3.7
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 470 VLRATQILIKENIARPVLIGSLLTIQDNIRRHDLQIIATKDFDVIDLNNKQSLKDYVDSY 529
++ + +LIK N P+LI L + I + + + + ++ N K S+ D +D Y
Sbjct: 7 IVSSQDLLIKINF--PILINQL--VNKKITWKNETWVDSGGYQIMLYNLKISVDDVLDKY 62
Query: 530 RSLSAEKGISLD 541
++ +A SLD
Sbjct: 63 KTYNAYAFFSLD 74
>gnl|CDD|183733 PRK12769, PRK12769, putative oxidoreductase Fe-S binding subunit;
Reviewed.
Length = 654
Score = 29.3 bits (66), Expect = 4.0
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 8/46 (17%)
Query: 190 LNGMKLVGKKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYD 235
L+ + K+ + I GAG A LAC ++L GV + VYD
Sbjct: 320 LSQVTKSDKRVAII-----GAGPAGLACADVLARNGV---AVTVYD 357
>gnl|CDD|164861 PHA01630, PHA01630, putative group 1 glycosyl transferase.
Length = 331
Score = 29.0 bits (65), Expect = 5.2
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 386 PVFGPNYLIPSPFDPNLISY 405
+ P Y+IP +P + Y
Sbjct: 115 KIPQPIYVIPHNLNPRMFEY 134
>gnl|CDD|178027 PLN02405, PLN02405, hexokinase.
Length = 497
Score = 28.3 bits (63), Expect = 7.4
Identities = 30/102 (29%), Positives = 45/102 (44%), Gaps = 9/102 (8%)
Query: 164 ILSQKLKIPFLHDDQHGTAVTVTAATLNGMKLVGKKFSDIKIV---TLGAGAAALACLNL 220
+ KLKIPF+ +A + T +K+VG K DI + +L + N+
Sbjct: 344 TVPPKLKIPFILRTPDMSA--MHHDTSPDLKVVGSKLKDILEIPNTSLKMRKVVVELCNI 401
Query: 221 LVTMGVRRENIWVYDLEGLVYEGRE--KKFDKWKSVYAQKSG 260
+ T G R +Y + L GR+ K +K KSV A G
Sbjct: 402 VATRGARLSAAGIYGI--LKKLGRDTVKDGEKQKSVIAMDGG 441
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.318 0.133 0.376
Gapped
Lambda K H
0.267 0.0665 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 12,421,846
Number of extensions: 822031
Number of successful extensions: 1856
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1830
Number of HSP's successfully gapped: 39
Length of query: 779
Length of database: 5,994,473
Length adjustment: 101
Effective length of query: 678
Effective length of database: 3,812,065
Effective search space: 2584580070
Effective search space used: 2584580070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.4 bits)