BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780137|ref|YP_003064550.1| malic enzyme [Candidatus
Liberibacter asiaticus str. psy62]
         (779 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780137|ref|YP_003064550.1| malic enzyme [Candidatus Liberibacter asiaticus str. psy62]
          Length = 779

 Score = 1596 bits (4133), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 779/779 (100%), Positives = 779/779 (100%)

Query: 1   MEKRSSKKTKNPSFQEGDSLFKQALLYHQYPSPGKLEVNATKMLNDQKDLSLAYSPGVAA 60
           MEKRSSKKTKNPSFQEGDSLFKQALLYHQYPSPGKLEVNATKMLNDQKDLSLAYSPGVAA
Sbjct: 1   MEKRSSKKTKNPSFQEGDSLFKQALLYHQYPSPGKLEVNATKMLNDQKDLSLAYSPGVAA 60

Query: 61  PSMMIAEDPSKAAMYTNRSNLVAVVSNGSAVLGLGDIGPLASKPVMEGKAVLFKKFAGIN 120
           PSMMIAEDPSKAAMYTNRSNLVAVVSNGSAVLGLGDIGPLASKPVMEGKAVLFKKFAGIN
Sbjct: 61  PSMMIAEDPSKAAMYTNRSNLVAVVSNGSAVLGLGDIGPLASKPVMEGKAVLFKKFAGIN 120

Query: 121 VFDIEINAKDVDTMVSTIVALEPTFGGINLEDIKAPECFEVERILSQKLKIPFLHDDQHG 180
           VFDIEINAKDVDTMVSTIVALEPTFGGINLEDIKAPECFEVERILSQKLKIPFLHDDQHG
Sbjct: 121 VFDIEINAKDVDTMVSTIVALEPTFGGINLEDIKAPECFEVERILSQKLKIPFLHDDQHG 180

Query: 181 TAVTVTAATLNGMKLVGKKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLV 240
           TAVTVTAATLNGMKLVGKKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLV
Sbjct: 181 TAVTVTAATLNGMKLVGKKFSDIKIVTLGAGAAALACLNLLVTMGVRRENIWVYDLEGLV 240

Query: 241 YEGREKKFDKWKSVYAQKSGPKPLSETMNNADVFLGLSVAGALDPAILKFMAEKPLIMVL 300
           YEGREKKFDKWKSVYAQKSGPKPLSETMNNADVFLGLSVAGALDPAILKFMAEKPLIMVL
Sbjct: 241 YEGREKKFDKWKSVYAQKSGPKPLSETMNNADVFLGLSVAGALDPAILKFMAEKPLIMVL 300

Query: 301 ANPNPEAMPDEIKKVRPDAMICTGRSDFSNQVNNVLCFPYIFRGALDCGATAITEEMKVA 360
           ANPNPEAMPDEIKKVRPDAMICTGRSDFSNQVNNVLCFPYIFRGALDCGATAITEEMKVA
Sbjct: 301 ANPNPEAMPDEIKKVRPDAMICTGRSDFSNQVNNVLCFPYIFRGALDCGATAITEEMKVA 360

Query: 361 AARAMAVLVRDVPPDVVFDNFAKESPVFGPNYLIPSPFDPNLISYIAPAVAKAAEEAGVA 420
           AARAMAVLVRDVPPDVVFDNFAKESPVFGPNYLIPSPFDPNLISYIAPAVAKAAEEAGVA
Sbjct: 361 AARAMAVLVRDVPPDVVFDNFAKESPVFGPNYLIPSPFDPNLISYIAPAVAKAAEEAGVA 420

Query: 421 SSPIEDYEVYRDSLKRFSFPGRSLMKKIFSIAKGTDSKRILFSAGEDERVLRATQILIKE 480
           SSPIEDYEVYRDSLKRFSFPGRSLMKKIFSIAKGTDSKRILFSAGEDERVLRATQILIKE
Sbjct: 421 SSPIEDYEVYRDSLKRFSFPGRSLMKKIFSIAKGTDSKRILFSAGEDERVLRATQILIKE 480

Query: 481 NIARPVLIGSLLTIQDNIRRHDLQIIATKDFDVIDLNNKQSLKDYVDSYRSLSAEKGISL 540
           NIARPVLIGSLLTIQDNIRRHDLQIIATKDFDVIDLNNKQSLKDYVDSYRSLSAEKGISL
Sbjct: 481 NIARPVLIGSLLTIQDNIRRHDLQIIATKDFDVIDLNNKQSLKDYVDSYRSLSAEKGISL 540

Query: 541 DSIYDLLRSNTTLLGSLALKRGEGDGMICMCDSESGYNSHLTDIHKIIGMGLGISHYSAM 600
           DSIYDLLRSNTTLLGSLALKRGEGDGMICMCDSESGYNSHLTDIHKIIGMGLGISHYSAM
Sbjct: 541 DSIYDLLRSNTTLLGSLALKRGEGDGMICMCDSESGYNSHLTDIHKIIGMGLGISHYSAM 600

Query: 601 SMCIVRDNFLFFTDTHVSAEPSAMEIADSTILASQAICSLGMRPKVSVLFHSNSGSHCIK 660
           SMCIVRDNFLFFTDTHVSAEPSAMEIADSTILASQAICSLGMRPKVSVLFHSNSGSHCIK
Sbjct: 601 SMCIVRDNFLFFTDTHVSAEPSAMEIADSTILASQAICSLGMRPKVSVLFHSNSGSHCIK 660

Query: 661 SSLKMRDSFEKICELSKNLEVDAIVQEEVCLSEIFCDKDVPNTSSSQDAQLLVFPNIDSA 720
           SSLKMRDSFEKICELSKNLEVDAIVQEEVCLSEIFCDKDVPNTSSSQDAQLLVFPNIDSA
Sbjct: 661 SSLKMRDSFEKICELSKNLEVDAIVQEEVCLSEIFCDKDVPNTSSSQDAQLLVFPNIDSA 720

Query: 721 NIALEMAKSVTNGLHIGTLLLGAALPVHIVPSSVSVREIIDMVALVMASNNSNSSKEKM 779
           NIALEMAKSVTNGLHIGTLLLGAALPVHIVPSSVSVREIIDMVALVMASNNSNSSKEKM
Sbjct: 721 NIALEMAKSVTNGLHIGTLLLGAALPVHIVPSSVSVREIIDMVALVMASNNSNSSKEKM 779


>gi|254780877|ref|YP_003065290.1| ATP-dependent Clp protease, ATP-binding subunit protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 853

 Score = 25.0 bits (53), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 465 GEDERVLRATQILIKENIARPVLIG 489
           G D+ + RA Q+L +     PVLIG
Sbjct: 182 GRDDEMRRAIQVLSRRTKNNPVLIG 206


>gi|254781087|ref|YP_003065500.1| H+transporting two-sector ATPase C subunit [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 91

 Score = 25.0 bits (53), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 176 DDQHGTAVTVTAATLNGMKLVGKKFSDIKIVTLGAGAAALACLNLLVT 223
           D Q   A T  AA  NG   +  K+  + +  LG G  ALA  N+  T
Sbjct: 2   DKQMMEAATFAAA--NGYYSLAAKYVAVGMACLGMGLVALAVSNIFTT 47


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.318    0.133    0.376 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 470,533
Number of Sequences: 1233
Number of extensions: 19513
Number of successful extensions: 54
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51
Number of HSP's gapped (non-prelim): 3
length of query: 779
length of database: 328,796
effective HSP length: 81
effective length of query: 698
effective length of database: 228,923
effective search space: 159788254
effective search space used: 159788254
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 42 (20.8 bits)