HHsearch alignment for GI: 254780138 and conserved domain: COG1366

>COG1366 SpoIIAA Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [Signal transduction mechanisms].

Probab=97.58  E-value=0.00041  Score=47.51  Aligned_cols=83  Identities=14%  Similarity=0.331  Sum_probs=67.6

Q ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHH---HCCCCCCCCCCCHHHHHHHH
Q ss_conf             799984035635522007999986431167880899701051521299999999997---51876431589912699999
Q gi|254780138|r    7 TVFRFAGNWKSPEISEIADDVVMAINKSIQSDSAIVDLSAITEIDTIGAELIMYFME---KYHGKIKLQGVSTHIEQLFS   83 (373)
Q Consensus         7 ~vL~LsGdWTl~~l~~l~~~l~~~L~~~~~~~~i~iDls~i~~lDTAGA~lL~~l~~---~~~~~~~~~~l~~~~~~Ll~   83 (373)
T Consensus        15 ~vl~l~G~lD~~~a~~~~e~~~~~~~~~-~~~~ivIDls~v~~~dS~gl~~L~~~~~~~~~~g~~~~l~~i~p~v~~~~~   93 (117)
T COG1366          15 LVLPLIGELDAARAPALKETLLEVIAAS-GARGLVIDLSGVDFMDSAGLGVLVALLKSARLRGVELVLVGIQPEVARTLE   93 (117)
T ss_pred             EEEEEEEEEEHHHHHHHHHHHHHHHHHC-CCCEEEEECCCCCEECCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHH
T ss_conf             8999554871888999999999999746-997799988888774545899999999999866994899929999999999


Q ss_pred             HHHHHHH
Q ss_conf             8864222
Q gi|254780138|r   84 LISFTHR   90 (373)
Q Consensus        84 Ll~~~~~   90 (373)
T Consensus        94 ~~gl~~~  100 (117)
T COG1366          94 LTGLDKS  100 (117)
T ss_pred             HHCCCCE
T ss_conf             9397412