HHsearch alignment for GI: 254780138 and conserved domain: cd06844
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=98.32 E-value=3e-06 Score=62.43 Aligned_cols=85 Identities=15% Similarity=0.329 Sum_probs=72.8
Q ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHH---HCCCCCCCCCCCHHHH
Q ss_conf 5882799984035635522007999986431167880899701051521299999999997---5187643158991269
Q gi|254780138|r 3 ENGITVFRFAGNWKSPEISEIADDVVMAINKSIQSDSAIVDLSAITEIDTIGAELIMYFME---KYHGKIKLQGVSTHIE 79 (373)
Q Consensus 3 ~dG~~vL~LsGdWTl~~l~~l~~~l~~~L~~~~~~~~i~iDls~i~~lDTAGA~lL~~l~~---~~~~~~~~~~l~~~~~ 79 (373)
T Consensus 6 ~d~~lVv~l~GelD~~ta~~lr~~l~~~i~~~-~~~~iVvDls~v~f~DSsGl~~Ll~~~k~~~~~Gg~l~l~~~~p~V~ 84 (100)
T cd06844 6 VDDYWVVRLEGELDHHSVEQFKEELLHNITNV-AGKTIVIDISALEFMDSSGTGVLLERSRLAEAVGGQFVLTGISPAVR 84 (100)
T ss_pred ECCEEEEEEEEEECHHHHHHHHHHHHHHHHHC-CCCEEEEECCCCEEECHHHHHHHHHHHHHHHHCCCEEEEECCCHHHH
T ss_conf 99999999779983888999999999999738-99789998768818847899999999999996699899983998999
Q ss_pred HHHHHHHHH
Q ss_conf 999988642
Q gi|254780138|r 80 QLFSLISFT 88 (373)
Q Consensus 80 ~Ll~Ll~~~ 88 (373)
T Consensus 85 ~vf~~tGld 93 (100)
T cd06844 85 ITLTESGLD 93 (100)
T ss_pred HHHHHHCCC
T ss_conf 999994868